Psyllid ID: psy9598
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1915 | 2.2.26 [Sep-21-2011] | |||||||
| Q921C3 | 2304 | Bromodomain and WD repeat | yes | N/A | 0.698 | 0.580 | 0.383 | 0.0 | |
| A2AHJ4 | 1799 | Bromodomain and WD repeat | no | N/A | 0.324 | 0.345 | 0.469 | 1e-168 | |
| Q6RI45 | 1802 | Bromodomain and WD repeat | yes | N/A | 0.324 | 0.344 | 0.466 | 1e-167 | |
| Q9NSI6 | 2320 | Bromodomain and WD repeat | no | N/A | 0.322 | 0.265 | 0.465 | 1e-166 | |
| Q8WWQ0 | 1821 | PH-interacting protein OS | no | N/A | 0.419 | 0.440 | 0.399 | 1e-161 | |
| Q8VDD9 | 1821 | PH-interacting protein OS | no | N/A | 0.334 | 0.352 | 0.458 | 1e-161 | |
| Q54MP8 | 2200 | Bromodomain and WD repeat | yes | N/A | 0.228 | 0.199 | 0.290 | 2e-51 | |
| Q00808 | 1356 | Vegetative incompatibilit | yes | N/A | 0.160 | 0.226 | 0.284 | 2e-22 | |
| Q8YTC2 | 1258 | Uncharacterized WD repeat | no | N/A | 0.181 | 0.276 | 0.240 | 7e-21 | |
| Q8YV57 | 1683 | Uncharacterized WD repeat | no | N/A | 0.163 | 0.185 | 0.248 | 1e-19 |
| >sp|Q921C3|BRWD1_MOUSE Bromodomain and WD repeat-containing protein 1 OS=Mus musculus GN=Brwd1 PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 996 bits (2576), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 574/1495 (38%), Positives = 834/1495 (55%), Gaps = 158/1495 (10%)
Query: 305 LDQELMLLIIKYLEKGPCHEAAKVLTDLVEAKNLLPERYDWEGATHSQTLAEVASSHPNV 364
++ EL LI +YL GPC AA+VL +E LLP+R DWEG H+++ E+ S+ +V
Sbjct: 14 IESELYFLIARYLSAGPCRRAAQVLVQELEQYQLLPKRLDWEGNEHNRSYEELVLSNKHV 73
Query: 365 TASFLPKICQRLGPLLDKELKPNFPGLKSLLSGGSQSLLRSEKSLAKSVLSSYDYIARQH 424
L +ICQR+GP+LDKE+ P+ + SLL G QSLLR+ K +V + A
Sbjct: 74 APDHLLQICQRIGPMLDKEVPPSISRVTSLLGAGRQSLLRTAKDCRHTVWKGSAFAALHR 133
Query: 425 GTSLLVP-NSVKVHNTVNVLRSREYSGPLSRSLMISSHKYSNLRQHYVNLGHLSAVFCVL 483
G +P N + V + R R+ +G + S Y +++ H LGHLSAV+CV
Sbjct: 134 GRPPEMPVNYGPPPSLVEIHRGRQLTGCSTFSTAFPGTMYQHIKMHRRILGHLSAVYCVA 193
Query: 484 FDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIR 543
FD+ G I TG+DD L+K+W +G+LL+TLRG S EISD+A++ N L+AAG+ DK IR
Sbjct: 194 FDRTGHRIFTGSDDCLVKIWSTHNGRLLSTLRGHSAEISDMAVNYENTLIAAGSCDKIIR 253
Query: 544 IWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTV 603
+W L+T AP++VL GH G IT + F P+ Y+ ST DG + FW++ L+ S
Sbjct: 254 VWCLRTCAPVAVLQGHTGSITSLQFSPMAKGPQRYMVSTGADGTVCFWQWDLE---SLKF 310
Query: 604 FHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHS 663
P+ F E+ RPG +LCSSFS GG+FLATGS DH +R+Y + G D+P I E+E H+
Sbjct: 311 SPRPLKFTEKPRPG-VQMLCSSFSVGGMFLATGSTDHVIRMYFL-GFDAPEKIAELESHT 368
Query: 664 DKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIK 723
DKVDSIQ+ ++ RF+SGSRDGTA IW ++ +WR I LDM+ + + +E K K
Sbjct: 369 DKVDSIQFCNNGDRFLSGSRDGTARIWRFEQLEWRSILLDMSARISGDTSSEEERFMKPK 428
Query: 724 VTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSA 783
VTM+AW+ D V+TA+N + +K+W ++ G L+ L GH +EVFVLE+HPFDSR++LSA
Sbjct: 429 VTMIAWNQDDSTVVTAVN-DHVLKVWSSYTGQLLHNLLGHADEVFVLETHPFDSRIMLSA 487
Query: 784 GHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGL 843
GHDG I IWDI +K K + N++EGQG GA+FD K+S DG A TDS+GHLL++G
Sbjct: 488 GHDGSIFIWDI--TKGIKMKHYFNMIEGQGHGAVFDCKFSQDGQHFACTDSHGHLLIFGF 545
Query: 844 GGFKRPQNIPRELFFHTDYRTLNRPNGLFEPTYDEVTNLPPHLMPPPFLVDLNGTPYPPE 903
G K + IP ++FFHTDYR L R + + DE T PHLMPPPFLVD++G P+P +
Sbjct: 546 GCSKPYEKIPDQMFFHTDYRPLIRDSNNY--VLDEQTQQAPHLMPPPFLVDVDGNPHPTK 603
Query: 904 VQRLVPGRENA--------------DDTELLPDIT---TNDDGHVE----IVEG------ 936
QRLVPGREN+ D E++ I TND G +++G
Sbjct: 604 FQRLVPGRENSADEHLVPQLGYVATSDGEVIEQIISLHTNDSGDASPESSVLDGMIRQLQ 663
Query: 937 ------------SERNGERPVEVEGQRHYNDHGHVYIQTSHVHVLRSRANGESSAATEGT 984
NG E +R + IQ+ LR E
Sbjct: 664 QQQDQRLGVDQDGTANGLPSGEGTPRRGSFRRLSLDIQSPPNIGLRRSGQVEGVRQMHQN 723
Query: 985 SPSGTAPTAQNKNFVKRL-------PLSQHKIVVERINAFAEIESEEFIKESKKLFDSST 1037
+P T ++ KR P ++ RI E + I KK F
Sbjct: 724 APRSQIATERDLQAWKRRVVVPEAPPGMFRRLEDIRIERGEEERNLYVIGRKKKTFQVPQ 783
Query: 1038 TTQPLVVKKEKKKKVVRQARTRAEYSEHIQDQYEDPDNLSLSGSEESASDSDQSQVDVSD 1097
+ +V+ + +++ R R A YS DQ E LS SG+E S S ++ D S+
Sbjct: 784 KSNSMVLVSQSRQRTCR--RKYANYSRRNADQCE----LS-SGNESSGSVRHETSYDQSE 836
Query: 1098 LCESSSSSGGTSSSDYSDWIHE------------------------GVNLEPP------K 1127
G+ SS+ +W ++ G+NL+PP +
Sbjct: 837 ---------GSCSSEDDEWRNDRRSGSDSDSSSDSSSQYSDWTADTGINLQPPLRMSCRR 887
Query: 1128 RVRRHTKVKPIQVSLP----------------------KQLIPEEVPDI-----YKPSDW 1160
RV R ++S+ +++ P E+ ++ + P W
Sbjct: 888 RVTRFCSTSEDEMSMENISPPKRRRKRRKESKPKRESLRRMTPAELANMEHLYEFHPPVW 947
Query: 1161 LAEVVPKKAPYYPQMGDEVMFFKQGYQKYVDAVRSKGIYELSRLRSSPWGNLILQEPELV 1220
+ + +K+P+ PQMGDEVM+F+QG++ Y++AVR IYEL+ + PW + L++ ELV
Sbjct: 948 ITDTTLRKSPFVPQMGDEVMYFRQGHEAYIEAVRRNNIYELNPHKE-PWRKMDLRDQELV 1006
Query: 1221 KVVGIKYEIAPPRMCCLKLAVMKP-NGKLTNEFFNIKYHDMPDVIDFFVLRQIYETAIAR 1279
K+VG++YE+ PP +CCLKLA + P G+LT++ F+I+YHDMPDVIDF VLRQ Y+ A R
Sbjct: 1007 KIVGLRYEVGPPTLCCLKLAFIDPATGRLTDKSFSIRYHDMPDVIDFLVLRQFYDEARQR 1066
Query: 1280 EWNVGDRFCSMIDDAWWWGTIEGK----PSPTKSPFLGYKILWDNNERENLSPWDLEP-P 1334
W DRF S+IDDAWW+GT+ + P S F Y + WDN E E LSPWD+EP P
Sbjct: 1067 NWQPCDRFRSIIDDAWWFGTVLSQEPYQPQYPDSHFQCYIVRWDNTETEKLSPWDMEPIP 1126
Query: 1335 KEGKEATEPGGSLPVEPEEIQELLYHPRPDEWPQGDRDATCEKIITGLEEVMGLSVAEPF 1394
E G S+ V +E+++LLY P+ EW Q RD C++II+G+++++ L +A F
Sbjct: 1127 DNVDPPEELGASISVTSDELEKLLYKPQEGEWGQRSRDEECDRIISGIDQLLNLDIAAAF 1186
Query: 1395 LVPVDISQYPAYAYVVEYPVDLTTLRARFQNRFYRRITSAQFDVRYLAANAEKFNEPHSN 1454
PVD+ YP Y VV YP DL T+R R NRFYRR+++ ++VRY+ NA FNEP S
Sbjct: 1187 AGPVDLCTYPKYCTVVAYPTDLYTIRMRLVNRFYRRLSALIWEVRYIEHNARTFNEPESV 1246
Query: 1455 IVKYARIITDLLLRIIKEPNPVDVPVVYHELLQNYETSSSEEEEEEDSKSRQRRVRPTAV 1514
I + A+ ITD LL+ IK + ++ E ++ + +E+DS
Sbjct: 1247 IARSAKKITDQLLKFIKNQDCTNI----------SELCNTSDNDEDDSADDLDDSDLPKT 1296
Query: 1515 TRAQREAMNQKKLKRP-----FNWKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIV 1569
+ +R+ N K+ R +W+ +C+ +L ++ C DSEPFR+PVD ++PDY I+
Sbjct: 1297 SSGRRKVHNWKRRSRASGCIESDWRRQCKALLILIFQCEDSEPFRQPVDLDEYPDYRDII 1356
Query: 1570 IAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQNKRSKIYIMTTRLSEFAEEH 1629
PMD GT+RE L NY+SP++F KD++ +F N++ Y NKRSKIY MT RLS EE
Sbjct: 1357 DTPMDFGTVRETLEAGNYDSPVEFCKDIRLIFSNAKAYTPNKRSKIYSMTLRLSALFEEK 1416
Query: 1630 LRRLTVRWN-SHKNKENKKDSKRGEKKIKR-----MKRRRRKIRRTLVESDDEVL 1678
+++++ + K KE + S+R +++ RRRR +++ +S +V+
Sbjct: 1417 MKKISFDFKIGQKFKEKLRRSQRFKQRQNCNGAVPGDRRRRNVKQKQFKSQTKVI 1471
|
May be a transcriptional activator. May be involved in chromatin remodeling. Plays a role in the regulation of cell morphology and cytoskeletal organization. Required in the control of cell shape. Mus musculus (taxid: 10090) |
| >sp|A2AHJ4|BRWD3_MOUSE Bromodomain and WD repeat-containing protein 3 OS=Mus musculus GN=Brwd3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 593 bits (1530), Expect = e-168, Method: Compositional matrix adjust.
Identities = 300/639 (46%), Positives = 414/639 (64%), Gaps = 18/639 (2%)
Query: 303 TRLDQELMLLIIKYLEKGPCHEAAKVLTDLVEAKNLLPERYDWEGATHSQTLAEVASSHP 362
T+++ EL LI ++L+ GPC+++A+VL +E L+P R DWEG H ++ ++ +++
Sbjct: 6 TQIEAELYYLIARFLQSGPCNKSAQVLVQELEEHQLIPRRLDWEGKEHRRSFEDLVAANA 65
Query: 363 NVTASFLPKICQRLGPLLDKELKPNFPGLKSLLSGGSQSLLRSEKSLAKSVLSSYDYIAR 422
++ +L KIC+R+GPLLDKE+ + PG+++LL G QSLLR K ++ + + A
Sbjct: 66 HIPPDYLLKICERIGPLLDKEIPQSVPGVQTLLGVGRQSLLRDAKDCKSTLWNGSAFAAL 125
Query: 423 QHGTSLLVP-NSVKVHNTVNVLRSREYSGPLSRSLMISSHKYSNLRQHYVNLGHLSAVFC 481
G +P N VK N VN+ +R+ +G S + S Y +++ H LGHLS+V+C
Sbjct: 126 HRGRPPELPVNYVKPPNVVNITSARQLTGCSRFSHVFPSSAYQHIKMHKRILGHLSSVYC 185
Query: 482 VLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKT 541
V FD+ G I TG+DD L+K+W DG+LLATLRG S EISD+A++ N L+AAG+ DK
Sbjct: 186 VAFDRSGRRIFTGSDDCLVKIWATDDGRLLATLRGHSAEISDMAVNYENTLIAAGSCDKV 245
Query: 542 IRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISK 601
+R+W L+T AP++VL GH IT + FCP YL ST DG I FW++ + +
Sbjct: 246 VRVWCLRTCAPVAVLQGHSASITSIQFCPSTKGTTRYLTSTGADGTICFWQWHVK---TM 302
Query: 602 TVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEE 661
PV F ER RPG I CSSFS GG+F+ TGS DH +R+Y + G + P I E+E
Sbjct: 303 KFRDRPVKFTERSRPG-VQISCSSFSSGGMFITTGSTDHVIRIYYL-GSEIPEKIAELES 360
Query: 662 HSDKVDSIQWSHS--HLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETN 719
H+DKV ++Q+ ++ LRFVSGSRDGTA IW Y+ +W+ I LDM T + TS E
Sbjct: 361 HTDKVVAVQFCNNGDSLRFVSGSRDGTARIWQYQQQEWKSIVLDMATKMSGNNLTSAEDK 420
Query: 720 -KKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSR 778
K+KVTMVAWD D VITA+N NF +K+W++ G L+ L GH +EVFVLE+HPFD R
Sbjct: 421 VTKLKVTMVAWDRYDTTVITAVN-NFLLKVWNSVTGQLLHTLSGHDDEVFVLEAHPFDQR 479
Query: 779 VLLSAGHDGLIIIWDILSSKQRGYKW--FHNIVEGQGEGALFDGKWSPDGTTCALTDSYG 836
++LSAGHDG I IWD+ RG K + N++EGQG GA+FD K+SPDG A TDS+G
Sbjct: 480 IILSAGHDGNIFIWDL----DRGTKIRNYFNMIEGQGHGAVFDCKFSPDGNHFACTDSHG 535
Query: 837 HLLVYGLGGFKRPQNIPRELFFHTDYRTLNRPNGLFEPTYDEVTNLPPHLMPPPFLVDLN 896
HLL++G G K + IP ++FFHTDYR L R + DE T PHLMPPPFLVD++
Sbjct: 536 HLLLFGFGCSKYYEKIPDQMFFHTDYRPLIRDANNY--VLDEQTQQAPHLMPPPFLVDVD 593
Query: 897 GTPYPPEVQRLVPGRENADDTELLPDITTNDDGHVEIVE 935
G P+P + QRLVPGREN D +L+P + +G E+VE
Sbjct: 594 GNPHPTKFQRLVPGRENCKDEQLIPQLGYVANGDGEVVE 632
|
Plays a role in the regulation of cell morphology and cytoskeletal organization. Required in the control of cell shape. Mus musculus (taxid: 10090) |
| >sp|Q6RI45|BRWD3_HUMAN Bromodomain and WD repeat-containing protein 3 OS=Homo sapiens GN=BRWD3 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 590 bits (1521), Expect = e-167, Method: Compositional matrix adjust.
Identities = 298/639 (46%), Positives = 412/639 (64%), Gaps = 18/639 (2%)
Query: 303 TRLDQELMLLIIKYLEKGPCHEAAKVLTDLVEAKNLLPERYDWEGATHSQTLAEVASSHP 362
T+++ EL LI ++L+ GPC+++A+VL +E L+P R DWEG H ++ ++ +++
Sbjct: 6 TQIEAELYYLIARFLQSGPCNKSAQVLVQELEEHQLIPRRLDWEGKEHRRSFEDLVAANA 65
Query: 363 NVTASFLPKICQRLGPLLDKELKPNFPGLKSLLSGGSQSLLRSEKSLAKSVLSSYDYIAR 422
++ +L KIC+R+GPLLDKE+ + PG+++LL G QSLLR K ++ + + A
Sbjct: 66 HIPPDYLLKICERIGPLLDKEIPQSVPGVQTLLGVGRQSLLRDAKDCKSTLWNGSAFAAL 125
Query: 423 QHGTSLLVP-NSVKVHNTVNVLRSREYSGPLSRSLMISSHKYSNLRQHYVNLGHLSAVFC 481
G +P N VK N VN+ +R+ +G + S Y +++ H LGHLS+V+C
Sbjct: 126 HRGRPPELPVNYVKPPNVVNITSARQLTGCSRFGHIFPSSAYQHIKMHKRILGHLSSVYC 185
Query: 482 VLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKT 541
V FD+ G I TG+DD L+K+W DG+LLATLRG S EISD+A++ N L+AAG+ DK
Sbjct: 186 VAFDRSGRRIFTGSDDCLVKIWATDDGRLLATLRGHSAEISDMAVNYENTLIAAGSCDKV 245
Query: 542 IRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISK 601
+R+W L+T AP++VL GH IT + FCP YL ST DG I FW++ + +
Sbjct: 246 VRVWCLRTCAPVAVLQGHSASITSIQFCPSTKGTNRYLTSTGADGTICFWQWHVK---TM 302
Query: 602 TVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEE 661
PV F ER RPG I CSSFS GG+F+ TGS DH +R+Y + G + P I E+E
Sbjct: 303 KFRDRPVKFTERSRPG-VQISCSSFSSGGMFITTGSTDHVIRIYYL-GSEVPEKIAELES 360
Query: 662 HSDKVDSIQWSHS--HLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETN 719
H+DKV ++Q+ ++ LRFVSGSRDGTA IW Y+ +W+ I LDM T + S E
Sbjct: 361 HTDKVVAVQFCNNGDSLRFVSGSRDGTARIWQYQQQEWKSIVLDMATKMTGNNLPSGEDK 420
Query: 720 -KKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSR 778
K+KVTMVAWD D VITA+N NF +K+W++ G L+ L GH +EVFVLE+HPFD R
Sbjct: 421 ITKLKVTMVAWDRYDTTVITAVN-NFLLKVWNSITGQLLHTLSGHDDEVFVLEAHPFDQR 479
Query: 779 VLLSAGHDGLIIIWDILSSKQRGYKW--FHNIVEGQGEGALFDGKWSPDGTTCALTDSYG 836
++LSAGHDG I IWD+ RG K + N++EGQG GA+FD K+SPDG A TDS+G
Sbjct: 480 IILSAGHDGNIFIWDL----DRGTKIRNYFNMIEGQGHGAVFDCKFSPDGNHFACTDSHG 535
Query: 837 HLLVYGLGGFKRPQNIPRELFFHTDYRTLNRPNGLFEPTYDEVTNLPPHLMPPPFLVDLN 896
HLL++G G K + IP ++FFHTDYR L R + DE T PHLMPPPFLVD++
Sbjct: 536 HLLLFGFGCSKYYEKIPDQMFFHTDYRPLIRDANNY--VLDEQTQQAPHLMPPPFLVDVD 593
Query: 897 GTPYPPEVQRLVPGRENADDTELLPDITTNDDGHVEIVE 935
G P+P + QRLVPGREN D +L+P + +G E+VE
Sbjct: 594 GNPHPTKFQRLVPGRENCKDEQLIPQLGYVANGDGEVVE 632
|
Plays a role in the regulation of cell morphology and cytoskeletal organization. Required in the control of cell shape. Homo sapiens (taxid: 9606) |
| >sp|Q9NSI6|BRWD1_HUMAN Bromodomain and WD repeat-containing protein 1 OS=Homo sapiens GN=BRWD1 PE=1 SV=4 | Back alignment and function description |
|---|
Score = 587 bits (1512), Expect = e-166, Method: Compositional matrix adjust.
Identities = 293/630 (46%), Positives = 406/630 (64%), Gaps = 13/630 (2%)
Query: 305 LDQELMLLIIKYLEKGPCHEAAKVLTDLVEAKNLLPERYDWEGATHSQTLAEVASSHPNV 364
++ EL LI +YL GPC AA+VL +E LLP+R DWEG H+++ E+ S+ +V
Sbjct: 14 IESELYFLIARYLSAGPCRRAAQVLVQELEQYQLLPKRLDWEGNEHNRSYEELVLSNKHV 73
Query: 365 TASFLPKICQRLGPLLDKELKPNFPGLKSLLSGGSQSLLRSEKSLAKSVLSSYDYIARQH 424
L +ICQR+GP+LDKE+ P+ + SLL G QSLLR+ K +V + A
Sbjct: 74 APDHLLQICQRIGPMLDKEIPPSISRVTSLLGAGRQSLLRTAKDCRHTVWKGSAFAALHR 133
Query: 425 GTSLLVP-NSVKVHNTVNVLRSREYSGPLSRSLMISSHKYSNLRQHYVNLGHLSAVFCVL 483
G +P N N V + R ++ +G + S Y +++ H LGHLSAV+CV
Sbjct: 134 GRPPEMPVNYGSPPNLVEIHRGKQLTGCSTFSTAFPGTMYQHIKMHRRILGHLSAVYCVA 193
Query: 484 FDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIR 543
FD+ G I TG+DD L+K+W +G+LL+TLRG S EISD+A++ N ++AAG+ DK IR
Sbjct: 194 FDRTGHRIFTGSDDCLVKIWSTHNGRLLSTLRGHSAEISDMAVNYENTMIAAGSCDKIIR 253
Query: 544 IWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTV 603
+W L+T AP++VL GH G IT + F P+ Y+ ST DG + FW++ L+ S
Sbjct: 254 VWCLRTCAPVAVLQGHTGSITSLQFSPMAKGSQRYMVSTGADGTVCFWQWDLE---SLKF 310
Query: 604 FHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHS 663
P+ F E+ RPG +LCSSFS GG+FLATGS DH +R+Y + G ++P I E+E H+
Sbjct: 311 SPRPLKFTEKPRPG-VQMLCSSFSVGGMFLATGSTDHVIRMYFL-GFEAPEKIAELESHT 368
Query: 664 DKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIK 723
DKVDSIQ+ ++ RF+SGSRDGTA IW ++ +WR I LDM T + + +E K K
Sbjct: 369 DKVDSIQFCNNGDRFLSGSRDGTARIWRFEQLEWRSILLDMATRISGDLSSEEERFMKPK 428
Query: 724 VTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSA 783
VTM+AW+ +D V+TA+N + +K+W+++ G L+ L GH +EVFVLE+HPFDSR++LSA
Sbjct: 429 VTMIAWNQNDSIVVTAVN-DHVLKVWNSYTGQLLHNLMGHADEVFVLETHPFDSRIMLSA 487
Query: 784 GHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGL 843
GHDG I IWDI +K K + N++EGQG GA+FD K+S DG A TDS+GHLL++G
Sbjct: 488 GHDGSIFIWDI--TKGTKMKHYFNMIEGQGHGAVFDCKFSQDGQHFACTDSHGHLLIFGF 545
Query: 844 GGFKRPQNIPRELFFHTDYRTLNRPNGLFEPTYDEVTNLPPHLMPPPFLVDLNGTPYPPE 903
G K + IP ++FFHTDYR L R + + DE T PHLMPPPFLVD++G P+P +
Sbjct: 546 GCSKPYEKIPDQMFFHTDYRPLIRDSNNY--VLDEQTQQAPHLMPPPFLVDVDGNPHPTK 603
Query: 904 VQRLVPGRENADDTELLPDI--TTNDDGHV 931
QRLVPGREN+ D L+P + DG V
Sbjct: 604 YQRLVPGRENSADEHLIPQLGYVATSDGEV 633
|
May be a transcriptional activator. May be involved in chromatin remodeling (By similarity). Plays a role in the regulation of cell morphology and cytoskeletal organization. Required in the control of cell shape. Homo sapiens (taxid: 9606) |
| >sp|Q8WWQ0|PHIP_HUMAN PH-interacting protein OS=Homo sapiens GN=PHIP PE=1 SV=2 | Back alignment and function description |
|---|
Score = 569 bits (1467), Expect = e-161, Method: Compositional matrix adjust.
Identities = 342/856 (39%), Positives = 471/856 (55%), Gaps = 53/856 (6%)
Query: 297 METER--LTRLDQELMLLIIKYLEKGPCHEAAKVLTDLVEAKNLLPERYDWEGATHSQTL 354
M ER L+ L EL LI ++LE GPC +AA+VL V K LLP R DW G H +T
Sbjct: 1 MSCERKGLSELRSELYFLIARFLEDGPCQQAAQVLIREVAEKELLPRRTDWTGKEHPRTY 60
Query: 355 AEVASSHPNVTASFLPKICQRLGPLLDKELKPNFPGLKSLLSGGSQSLLRSEKSLAKSVL 414
+ + ++ L +IC RLGPLL++E+ + PG+++LL G QSLLR+ KS V
Sbjct: 61 QNLVKYYRHLAPDHLLQICHRLGPLLEQEIPQSVPGVQTLLGAGRQSLLRTNKSCKHVVW 120
Query: 415 SSYDYIARQHGTSLLVP-NSVKVHNTVNVLRSREYSGPLSRSLMISSHKYSNLRQHYVNL 473
A G P N + + L SR+ +G ++ + Y +++ H L
Sbjct: 121 KGSALAALHCGRPPESPVNYGSPPSIADTLFSRKLNGKYRLERLVPTAVYQHMKMHKRIL 180
Query: 474 GHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILL 533
GHLS+V+CV FD+ G I TG+DD L+K+W DG+LLATLRG + EISD+A++ N ++
Sbjct: 181 GHLSSVYCVTFDRTGRRIFTGSDDCLVKIWATDDGRLLATLRGHAAEISDMAVNYENTMI 240
Query: 534 AAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKY 593
AAG+ DK IR+W L+T AP++VL GH IT + F PL YL+ST DG I FW +
Sbjct: 241 AAGSCDKMIRVWCLRTCAPLAVLQGHSASITSLQFSPLCSGSKRYLSSTGADGTICFWLW 300
Query: 594 KLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSP 653
+ + P F ER RPG ++CSSFS GG+FLATGS DH +RVY G P
Sbjct: 301 DAG---TLKINPRPAKFTERPRPG-VQMICSSFSAGGMFLATGSTDHIIRVYFF-GSGQP 355
Query: 654 LGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKE 713
I E+E H+DKVDSIQ+S++ RFVSGSRDGTA IW +K +W+ I LDM T P +
Sbjct: 356 EKISELEFHTDKVDSIQFSNTSNRFVSGSRDGTARIWQFKRREWKSILLDMAT-RPAGQN 414
Query: 714 TSDETNK--KIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLE 771
+K K+KVTMVAWD D VITA+N N +K+W+++ G L+ VL GH +EVFVLE
Sbjct: 415 LQGIEDKITKMKVTMVAWDRHDNTVITAVN-NMTLKVWNSYTGQLIHVLMGHEDEVFVLE 473
Query: 772 SHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKW--FHNIVEGQGEGALFDGKWSPDGTTC 829
HPFD RVL SAGHDG +I+WD+ RG K + N++EGQG GA+FD K SPDG
Sbjct: 474 PHPFDPRVLFSAGHDGNVIVWDL----ARGVKIRSYFNMIEGQGHGAVFDCKCSPDGQHF 529
Query: 830 ALTDSYGHLLVYGLGGFKRPQNIPRELFFHTDYRTLNRPNGLFEPTYDEVTNLPPHLMPP 889
A TDS+GHLL++G G + I ++FFH+DYR L R F DE T PHLMPP
Sbjct: 530 ACTDSHGHLLIFGFGSSSKYDKIADQMFFHSDYRPLIRDANNF--VLDEQTQQAPHLMPP 587
Query: 890 PFLVDLNGTPYPPEVQRLVPGRENADDTELLPDITTNDDGHVEIVEGSERNGERPVEVEG 949
PFLVD++G P+P QRLVPGREN + +L+P + G +++ P++
Sbjct: 588 PFLVDVDGNPHPSRYQRLVPGRENCREEQLIPQMGVTSSGLNQVLSQQANQEISPLDSMI 647
Query: 950 QRHYNDH-----GHVYI------------QTSHVHV---LRSRANGESSAATEGTSPSGT 989
QR + G I TS VH + R +G+ + S +
Sbjct: 648 QRLQQEQDLRRSGEAVISNTSRLSRGSISSTSEVHSPPNVGLRRSGQIEGVRQMHSNAPR 707
Query: 990 APTAQNKNFVKRLPLSQHKIVVERINAFAEIESEEF----IKESKKLFDSSTTTQPLVVK 1045
+ A ++ V ++VV ++A EE+ +E K + S + L V
Sbjct: 708 SEIATERDLVAW----SRRVVVPELSAGVASRQEEWRTAKGEEEIKTYRSEEKRKHLTVP 763
Query: 1046 KEKKKKVVRQARTRAEY---SEHIQDQYEDPDNLSLSGSEESASDSDQSQ--VDVSDLCE 1100
KE K V + + E + Q + + S EE+ S++ + SD E
Sbjct: 764 KENKIPTVSKNHAHEHFLDLGESKKQQTNQHNYRTRSALEETPRPSEEIENGSSSSDEGE 823
Query: 1101 SSSSSGGTSSSDYSDW 1116
+ SGGTS + W
Sbjct: 824 VVAVSGGTSEEEERAW 839
|
Probable regulator of the insulin and insulin-like growth factor signaling pathways. Stimulates cell proliferation through regulation of cyclin transcription and has an anti-apoptotic activity through AKT1 phosphorylation and activation. Plays a role in the regulation of cell morphology and cytoskeletal organization. Homo sapiens (taxid: 9606) |
| >sp|Q8VDD9|PHIP_MOUSE PH-interacting protein OS=Mus musculus GN=Phip PE=1 SV=2 | Back alignment and function description |
|---|
Score = 569 bits (1466), Expect = e-161, Method: Compositional matrix adjust.
Identities = 302/659 (45%), Positives = 403/659 (61%), Gaps = 18/659 (2%)
Query: 298 ETERLTRLDQELMLLIIKYLEKGPCHEAAKVLTDLVEAKNLLPERYDWEGATHSQTLAEV 357
E + L+ L EL LI ++LE GPC +AA+VL V K LLP R DW G H +T +
Sbjct: 4 ERKGLSELRSELYFLIARFLEDGPCQQAAQVLIREVAEKELLPRRTDWTGKEHPRTYQNL 63
Query: 358 ASSHPNVTASFLPKICQRLGPLLDKELKPNFPGLKSLLSGGSQSLLRSEKSLAKSVLSSY 417
+ ++ L +IC RLGPLL++E+ + PG+++LL G QSLLR+ KS V
Sbjct: 64 VKYYRHLAPDHLLQICHRLGPLLEQEIPQSVPGVQTLLGAGRQSLLRTNKSCKHVVWKGS 123
Query: 418 DYIARQHGTSLLVP-NSVKVHNTVNVLRSREYSGPLSRSLMISSHKYSNLRQHYVNLGHL 476
A G P N + + L SR+ +G ++ + Y +++ H LGHL
Sbjct: 124 ALAALHCGRPPESPVNYGSPPSIADTLFSRKLNGKYRLERLVPTAVYQHMKMHKRILGHL 183
Query: 477 SAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAG 536
S+V+CV FD+ G I TG+DD L+K+W DG+LLATLRG + EISD+A++ N ++AAG
Sbjct: 184 SSVYCVTFDRTGRRIFTGSDDCLVKIWATDDGRLLATLRGHAAEISDMAVNYENTMIAAG 243
Query: 537 TVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLD 596
+ DK IR+W L+T AP++VL GH IT + F PL YL+ST DG I FW + D
Sbjct: 244 SCDKMIRVWCLRTCAPLAVLQGHSASITSLQFSPLCSGSKRYLSSTGADGTICFWLW--D 301
Query: 597 IDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGI 656
K + P F ER RPG ++CSSFS GG+FLATGS DH +RVY G P I
Sbjct: 302 AGTLK-INPRPTKFTERPRPG-VQMICSSFSAGGMFLATGSTDHIIRVYFF-GSGQPEKI 358
Query: 657 LEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSD 716
E+E H+DKVDSIQ+S++ RFVSGSRDGTA IW +K +W+ I LDM T P +
Sbjct: 359 SELEFHTDKVDSIQFSNTSNRFVSGSRDGTARIWQFKRREWKSILLDMAT-RPAGQNLQG 417
Query: 717 ETNK--KIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHP 774
+K K+KVTMVAWD D VITA+N N +K+W+++ G L+ VL GH +EVFVLE HP
Sbjct: 418 IEDKITKMKVTMVAWDRHDNTVITAVN-NMTLKVWNSYTGQLIHVLMGHEDEVFVLEPHP 476
Query: 775 FDSRVLLSAGHDGLIIIWDILSSKQRGYKW--FHNIVEGQGEGALFDGKWSPDGTTCALT 832
FD RVL SAGHDG +I+WD+ RG K + N++EGQG GA+FD K SPDG A T
Sbjct: 477 FDPRVLFSAGHDGNVIVWDL----ARGVKVRSYFNMIEGQGHGAVFDCKCSPDGQHFACT 532
Query: 833 DSYGHLLVYGLGGFKRPQNIPRELFFHTDYRTLNRPNGLFEPTYDEVTNLPPHLMPPPFL 892
DS+GHLL++G G + I ++FFH+DYR L R F DE T PHLMPPPFL
Sbjct: 533 DSHGHLLIFGFGSSSKYDKIADQMFFHSDYRPLIRDANNF--VLDEQTQQAPHLMPPPFL 590
Query: 893 VDLNGTPYPPEVQRLVPGRENADDTELLPDITTNDDGHVEIVEGSERNGERPVEVEGQR 951
VD++G P+P QRLVPGREN + +L+P + G +++ P++ QR
Sbjct: 591 VDVDGNPHPSRYQRLVPGRENCREEQLIPQMGVTSSGLNQVLSQQANQDISPLDSMIQR 649
|
Probable regulator of the insulin and insulin-like growth factor signaling pathways. Stimulates cell proliferation through regulation of cyclin transcription and has an anti-apoptotic activity through AKT1 phosphorylation and activation. Plays a role in the regulation of cell morphology and cytoskeletal organization. Mus musculus (taxid: 10090) |
| >sp|Q54MP8|Y5837_DICDI Bromodomain and WD repeat-containing DDB_G0285837 OS=Dictyostelium discoideum GN=DDB_G0285837 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 206 bits (523), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 151/519 (29%), Positives = 241/519 (46%), Gaps = 81/519 (15%)
Query: 452 LSRSLMISSHK----YSNLRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARD 507
+S+SL +S YSN + + GH + +C+ FDK G + TG+DD L+K+W
Sbjct: 326 ISKSLKSTSQLPISFYSNFKNSLIVYGHKAPTYCLQFDKSGRLYFTGSDDHLVKVWSTYS 385
Query: 508 GKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQT--LAPISVLVGH----QG 561
G+L+ATLRG G+I+D+ N LLA + D IRIWNL + I+ L GH
Sbjct: 386 GRLIATLRGHLGDITDMCTSFDNSLLATASNDNVIRIWNLNSNQYDSIASLTGHDPSVNN 445
Query: 562 IITGVNFCPLEVNGFNYLASTSTDGCIGFWKY---------KLDIDISKTVFHEPVMFNE 612
IT ++F L L S+ + G W L+ + S++ + + +E
Sbjct: 446 TITSISF--LSNPTTRLLVSSDSFGQCKLWNLDKSNHVISLSLNDNGSQSTINTGNINDE 503
Query: 613 RI----------------------------------------RPGNAHILCSSFSPGGLF 632
+I PG + + + G
Sbjct: 504 QIDTEMITDAEVPILTATTITTAITTTATTATATIATTTTTTTPGKTNEITGTTMNKGGT 563
Query: 633 LATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYY 692
L S D ++++ + P + +E H + ++Q+SH VSGS DGT +IW +
Sbjct: 564 LIVASVDSSLKIWST-LFNPPKLVNTLEGHPTTILALQYSHGSDAIVSGSYDGTVIIWRH 622
Query: 693 KCS-QWRFIRLDM-NTCLPHTKETSDETNKKIKVTM--VAWDASDRWVITAINFNFQIKI 748
+W + ++ NT P+ + + + K T V W DR++IT ++N I++
Sbjct: 623 SGGPKWDHVIFNIKNTQRPNQANSHPKKVARSKATFKNVIWSHDDRFIITT-DYNM-IRV 680
Query: 749 WDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNI 808
W++ +G + HT+EV+V HPFDSR+++S+G+D +I+W I + G +
Sbjct: 681 WNSLDGSFHLEMAEHTSEVYVTSCHPFDSRLIMSSGYDSQVILWSI----ETGEIIKKFV 736
Query: 809 VEGQG-EGALFDGKWSPDGTTCALTDSYGHLLVYGLGGFKRPQN----IPRELFFHTDYR 863
++ G + + DG +SPDG +T+S G ++ LG N +P E +F TDY
Sbjct: 737 LQEPGFQCQILDGCFSPDGQKFIVTNSTGKWFMFELGLGSDINNLKKLVPNEQYFLTDYH 796
Query: 864 TLNR-PNGLFEPTYDEVTNLPPHLMPPPFLVDLNGTPYP 901
L R NG DE+T PPHLMP LV+ G PYP
Sbjct: 797 PLIRDANG---NVLDELTQTPPHLMPRAMLVNYQGLPYP 832
|
Dictyostelium discoideum (taxid: 44689) |
| >sp|Q00808|HETE1_PODAS Vegetative incompatibility protein HET-E-1 OS=Podospora anserina GN=HET-E1 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 109 bits (273), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 101/355 (28%), Positives = 154/355 (43%), Gaps = 48/355 (13%)
Query: 474 GHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILL 533
GH S+V V F G+ + +G+DD IK+W G TL G G + +A +
Sbjct: 839 GHGSSVLSVAFSADGQRVASGSDDKTIKIWDTASGTGTQTLEGHGGSVWSVAFSPDRERV 898
Query: 534 AAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKY 593
A+G+ DKTI+IW+ + L GH G + V F P +G +AS S D I W
Sbjct: 899 ASGSDDKTIKIWDAASGTCTQTLEGHGGRVQSVAFSP---DG-QRVASGSDDHTIKIWDA 954
Query: 594 KLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSP 653
S T + + + +L +FSP G +A+GSGD ++++ D+
Sbjct: 955 A-----SGTC-------TQTLEGHGSSVLSVAFSPDGQRVASGSGDKTIKIW-----DTA 997
Query: 654 LGIL--EVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHT 711
G +E H V S+ +S R SGS D T IW +T
Sbjct: 998 SGTCTQTLEGHGGSVWSVAFSPDGQRVASGSDDKTIKIW--------------DTASGTC 1043
Query: 712 KETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLE 771
+T + ++ + + D + + + + IKIWDA +G Q L+GH + V+ +
Sbjct: 1044 TQTLEGHGGWVQSVVFSPDGQR---VASGSDDHTIKIWDAVSGTCTQTLEGHGDSVWSVA 1100
Query: 772 SHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDG 826
P D + + S DG I IWD S +EG G G + +SPDG
Sbjct: 1101 FSP-DGQRVASGSIDGTIKIWDAASGT------CTQTLEGHG-GWVHSVAFSPDG 1147
|
Responsible for vegetative incompatibility through specific interactions with different alleles of the unlinked gene, het-c. Podospora anserina (taxid: 5145) |
| >sp|Q8YTC2|Y2800_NOSS1 Uncharacterized WD repeat-containing protein alr2800 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr2800 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 104 bits (260), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 99/412 (24%), Positives = 169/412 (41%), Gaps = 64/412 (15%)
Query: 449 SGPLSRSLMISSHKYSNLRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDG 508
SG R++ I ++ + Y+ GH ++V+ + + +++V+G+ D IKLW +
Sbjct: 827 SGSGDRTIKIWNYHTGECLKTYI--GHTNSVYSIAYSPDSKILVSGSGDRTIKLWDCQTH 884
Query: 509 KLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNF 568
+ TL G + E+ +A LA ++D+++R+WN +T + G+ V F
Sbjct: 885 ICIKTLHGHTNEVCSVAFSPDGQTLACVSLDQSVRLWNCRTGQCLKAWYGNTDWALPVAF 944
Query: 569 CPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSS--- 625
P LAS S D + W ++ IS H ++ P + + +S
Sbjct: 945 SPDR----QILASGSNDKTVKLWDWQTGKYISSLEGHTDFIYGIAFSPDSQTLASASTDS 1000
Query: 626 ---------------------------FSPGGLFLATGSGDHHVRVYKMDGVDSPLGILE 658
F P G +ATGS D V+++ + + +
Sbjct: 1001 SVRLWNISTGQCFQILLEHTDWVYAVVFHPQGKIIATGSADCTVKLWN---ISTGQCLKT 1057
Query: 659 VEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDET 718
+ EHSDK+ + WS S S D + +W C R C+ + S+
Sbjct: 1058 LSEHSDKILGMAWSPDGQLLASASADQSVRLW--DCCTGR--------CVGILRGHSNRV 1107
Query: 719 NKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSR 778
I + + +I + + +KIWD G ++ L GHTN VF + P D +
Sbjct: 1108 YSAIF-------SPNGEIIATCSTDQTVKIWDWQQGKCLKTLTGHTNWVFDIAFSP-DGK 1159
Query: 779 VLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCA 830
+L SA HD + IWD+ + K H+I G + +SPDG A
Sbjct: 1160 ILASASHDQTVRIWDVNTGK------CHHICIGHTH-LVSSVAFSPDGEVVA 1204
|
Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) |
| >sp|Q8YV57|Y2124_NOSS1 Uncharacterized WD repeat-containing protein all2124 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=all2124 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 90/362 (24%), Positives = 157/362 (43%), Gaps = 49/362 (13%)
Query: 474 GHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILL 533
GH V + F G+ + + + D IKLWR DGKL+ TL+G + + D+ + +
Sbjct: 1237 GHQDWVNSLSFSPDGKTLASASADKTIKLWRIADGKLVKTLKGHNDSVWDVNFSSDGKAI 1296
Query: 534 AAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKY 593
A+ + D TI++WN + + GH G + VNF P N +AS S D I W+
Sbjct: 1297 ASASRDNTIKLWNRHGI-ELETFTGHSGGVYAVNFLP----DSNIIASASLDNTIRLWQ- 1350
Query: 594 KLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVY-KMDGVDS 652
P++ + GN+ + SF G +AT D +++++ DG
Sbjct: 1351 ------------RPLISPLEVLAGNSGVYAVSFLHDGSIIATAGADGNIQLWHSQDG--- 1395
Query: 653 PLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTK 712
+L+ + + I ++ S + D T IW + + + T + H
Sbjct: 1396 --SLLKTLPGNKAIYGISFTPQGDLIASANADKTVKIWRVRDGK------ALKTLIGHDN 1447
Query: 713 ETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLES 772
E + KV + D + + + + +K+W+ +G + LKGHT+EVF +
Sbjct: 1448 EVN-------KVNF----SPDGKTLASASRDNTVKLWNVSDGKFKKTLKGHTDEVFWVSF 1496
Query: 773 HPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALT 832
P D +++ SA D I +WD S HN + ++ ++PDG+ A T
Sbjct: 1497 SP-DGKIIASASADKTIRLWDSFSGNLIKSLPAHNDL-------VYSVNFNPDGSMLAST 1548
Query: 833 DS 834
+
Sbjct: 1549 SA 1550
|
Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1915 | ||||||
| 328792422 | 1754 | PREDICTED: PH-interacting protein [Apis | 0.701 | 0.766 | 0.482 | 0.0 | |
| 380022150 | 1755 | PREDICTED: PH-interacting protein-like [ | 0.704 | 0.769 | 0.481 | 0.0 | |
| 340709156 | 1756 | PREDICTED: PH-interacting protein-like [ | 0.713 | 0.778 | 0.479 | 0.0 | |
| 350413090 | 1760 | PREDICTED: PH-interacting protein-like [ | 0.704 | 0.767 | 0.482 | 0.0 | |
| 383862427 | 1759 | PREDICTED: PH-interacting protein-like [ | 0.697 | 0.759 | 0.484 | 0.0 | |
| 307214674 | 1777 | Bromodomain and WD repeat-containing pro | 0.688 | 0.741 | 0.482 | 0.0 | |
| 307166542 | 1794 | Bromodomain and WD repeat-containing pro | 0.690 | 0.737 | 0.481 | 0.0 | |
| 332023728 | 1807 | PH-interacting protein [Acromyrmex echin | 0.672 | 0.712 | 0.477 | 0.0 | |
| 345481114 | 1881 | PREDICTED: bromodomain and WD repeat-con | 0.673 | 0.685 | 0.465 | 0.0 | |
| 242019103 | 1552 | WD repeat domain-containing protein, put | 0.682 | 0.842 | 0.470 | 0.0 |
| >gi|328792422|ref|XP_395863.4| PREDICTED: PH-interacting protein [Apis mellifera] | Back alignment and taxonomy information |
|---|
Score = 1337 bits (3460), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 686/1422 (48%), Positives = 942/1422 (66%), Gaps = 78/1422 (5%)
Query: 303 TRLDQELMLLIIKYLEKGPCHEAAKVLTDLVEAKNLLPERYDWEGATHSQTLAEVASSHP 362
T + EL LI K+L GPC EAA VL +E +LP+R DWEG H+QT E+ +
Sbjct: 10 TVIAPELYFLIAKFLAAGPCREAADVLKRELERAKVLPQRLDWEGHIHNQTFEELEKKYS 69
Query: 363 NVTASFLPKICQRLGPLLDKELKPNFPGLKSLLSGGSQSLLRSEKSLAKSVLSSYDYIAR 422
++ ++ L +IC R+GP+L+KE+ P G SLL G QSLLR+ + + + V + Y R
Sbjct: 70 HIGSNHLLQICARIGPVLEKEVPPCISGAISLLGAGRQSLLRTHEDVQRQVHTITSYSGR 129
Query: 423 QHGTSLL-VPNSVKVHNTVNVLRSREYSGPLSRSLMISSHKYSNLRQHYVNLGHLSAVFC 481
G L P S+ V N V+VL+ RE SGPLSR I + Y+ ++ + LGHLSAV+C
Sbjct: 130 LGGKPFLDSPYSLLVPNIVHVLQGRENSGPLSRREAIPTKFYNKMQLYRHTLGHLSAVYC 189
Query: 482 VLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKT 541
VLFD+ G+ I+TGADDLL+K+W + DG+LLAT RG S EI DIA++ N LLAAG++D+
Sbjct: 190 VLFDRTGKYIITGADDLLVKVWSSIDGRLLATFRGASAEIMDIAVNFDNTLLAAGSLDRI 249
Query: 542 IRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISK 601
+R+W QT++P++VL GH G+IT VNFCP+ NG YL STSTDG + FW + +
Sbjct: 250 LRVWCFQTMSPVAVLSGHSGMITSVNFCPISCNGVYYLVSTSTDGSVAFWSHTKKGNERA 309
Query: 602 TVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEE 661
+P+ ++E++RPG A ++C+SFSPGG F+A GS DHHVRVY M G + P +LEVE
Sbjct: 310 IFQPKPIQYHEKMRPGQAQMICASFSPGGAFMAAGSADHHVRVYSMLGDEGPCRVLEVEA 369
Query: 662 HSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKK 721
HSD VDSIQW+H+ L+F+SGS+DGTA +W+++ QW + RL M T LP ET D++NKK
Sbjct: 370 HSDTVDSIQWAHNGLKFISGSKDGTANVWHFEQQQWMYKRLLMTTKLPGESETEDDSNKK 429
Query: 722 IKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLL 781
KVTMV+WD SD WVITA+N + +K+W+A +G+LV++L+GH +EVFVLESHP D RV+L
Sbjct: 430 AKVTMVSWDVSDEWVITAVN-DSCLKVWNAKSGELVKILRGHKDEVFVLESHPIDPRVIL 488
Query: 782 SAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVY 841
SAGHDG +IIWD+L+++ F N +EGQG GA+FD KWSPDGT A TDS+GHLL+Y
Sbjct: 489 SAGHDGQLIIWDVLNTEP--IACFQNFIEGQGNGAVFDAKWSPDGTMLAATDSHGHLLIY 546
Query: 842 GLG-GFKRPQNIPRELFFHTDYRTLNRPNGLFEPTYDEVTNLPPHLMPPPFLVDLNGTPY 900
G G G ++ + +P+ELFFHTDYR L R + DE T PHLMPPPFLVD++G PY
Sbjct: 547 GFGSGVEKLKIVPKELFFHTDYRPLIRDANNY--VLDEQTQTAPHLMPPPFLVDVDGNPY 604
Query: 901 PPEVQRLVPGRENADDTELLPDITTNDDGHVEIVEG-----SERNGERPVEVEGQRH--- 952
PP +QRLVPGREN +L+P+I G E++EG N ++ +E QR
Sbjct: 605 PPALQRLVPGRENCRGEQLVPNIAVGAGGMQEVIEGLPAQEPRSNIDQLIEALAQRQNIN 664
Query: 953 -----YNDHGHVYIQTSHVHVLRS----RANGESSAATEGTSPSGTA-----PTAQNKNF 998
D V + S R+ + EG S T NK
Sbjct: 665 ADAESAADEREENAAEQPVRQMASPRGSRSGLRRAGDVEGVRQSSGNWQRDNTTPWNKPI 724
Query: 999 VKR-LPLSQHKIVVERINAFAEIESEEFIKESKKL---FDSSTTTQPLV---VKKEKKKK 1051
+ R + + + ++ ++A AE+E E +E +K ++ T+ + + K+ +
Sbjct: 725 LARPMNPAVRETQIKVLHATAEMELENLKREMRKRPQPVSNTANTEDNIGSRIANRKRNR 784
Query: 1052 VVRQA-RTRAEYSEHIQDQ-YEDPDNLSLSGSEESASDSDQSQVDVSDLCESSSSSGGTS 1109
R RTRA E +D +E+PDN+ +GS S++ +D + + DLC SS+S S
Sbjct: 785 TTRHGYRTRATRGEEQEDDDFENPDNVGTTGSSASSNSNDSTAHE-EDLCSDSSTS--ES 841
Query: 1110 SSDYSDWIHE-GVNLEPPKRVRRHTKVKPIQVSLPKQL------------IP-----EEV 1151
S++YSDWI + G+NLEPPKR +R VK ++ P + IP +++
Sbjct: 842 STEYSDWIADHGLNLEPPKRSKRK-PVKKRSLTPPSDMDRRRNRRPRKKDIPLSTGIDDI 900
Query: 1152 PDIYKPSDWLAEVVPKKAPYYPQMGDEVMFFKQGYQKYVDAVRSKGIYELSRLRSSPWGN 1211
PD+++PS+WL E++P+KAPYYPQMGDE+++F+QG+Q Y+DAVR+K +YEL R PW
Sbjct: 901 PDVFRPSEWLTEIIPRKAPYYPQMGDEIVYFRQGHQFYLDAVRNKKVYELGP-RCEPWNK 959
Query: 1212 LILQEPELVKVVGIKYEIAPPRMCCLKLAVMKPNGKLTNEFFNIKYHDMPDVIDFFVLRQ 1271
+ ++ E VKVVGIKYEI PPR+CCLKLA+M +G+LT E F IKYHDM DV+DF VLRQ
Sbjct: 960 VNIRAQEFVKVVGIKYEIRPPRLCCLKLALMDEDGRLTGENFTIKYHDMADVLDFLVLRQ 1019
Query: 1272 IYETAIAREWNVGDRFCSMIDDAWWWGTIEG-KPSPTKSP---FLGYKILWDNNERENLS 1327
++TA+AR W+ GDRF MIDD WW G I+ +P P F+ +++ WDN E E +S
Sbjct: 1020 TFDTALARSWSEGDRFRCMIDDGWWMGQIQSMEPLDEDFPESFFMCFRVRWDNGEYERMS 1079
Query: 1328 PWDLEPPKEGKEATEPGGSLPVEPEEIQELLYHPRPDEWPQGDRDATCEKIITGLEEVMG 1387
PWDLEP E + E GG++PV PEEI+ +LY P +EWP GDR+ATC +II GL++VM
Sbjct: 1080 PWDLEPIDENRLPAELGGAVPVLPEEIRTILYQPHAEEWPMGDREATCRRIIRGLDQVMS 1139
Query: 1388 LSVAEPFLVPVDISQYPAYAYVVEYPVDLTTLRARFQNRFYRRITSAQFDVRYLAANAEK 1447
L++AEPF+ PVD++ YPAYA+VVEYP+DLTT++ARF+N FYRRITSAQFDVRYLA NAE+
Sbjct: 1140 LAIAEPFMAPVDLNAYPAYAFVVEYPIDLTTIKARFENNFYRRITSAQFDVRYLATNAEQ 1199
Query: 1448 FNEPHSNIVKYARIITDLLLRIIKEPNPVDVPVVYHELLQNYETSSSEEEEEEDSKSRQR 1507
FNEPHS IVK+ARI+TDL LRIIKE +DVP +YH+L+ Y +S S E + ED+K+
Sbjct: 1200 FNEPHSQIVKHARIVTDLCLRIIKETTEIDVPALYHQLVDTYHSSES-EVDVEDTKN--- 1255
Query: 1508 RVRPTAVTRAQREAMNQKKLKRPFNWKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDK 1567
RP+ T+ + N + + +WK CR++LETLW C DS PFR+PVD+L+HPDY +
Sbjct: 1256 --RPSTSTQRATSSRNLRSPEVSNDWKVACRQLLETLWQCEDSIPFREPVDRLEHPDYHQ 1313
Query: 1568 IVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQNKRSKIYIMTTRLSEFAE 1627
I+ PMDL T++E+L G NYE+P++F KD++ +F NSRNYN NKRS+IY MT RLS E
Sbjct: 1314 IIDTPMDLRTVKEDLLGGNYETPLEFAKDMRLIFTNSRNYNTNKRSRIYSMTIRLSAMFE 1373
Query: 1628 EHLRRLTVRWNSHKNKENKKDSKRGEKKIKRMKRRRRKIRRT 1669
EH+R++ W S + + N + +G K RR K+R T
Sbjct: 1374 EHMRKIISNWKSARRRNNNTKNTKG-------KGRRGKVRLT 1408
|
Source: Apis mellifera Species: Apis mellifera Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|380022150|ref|XP_003694916.1| PREDICTED: PH-interacting protein-like [Apis florea] | Back alignment and taxonomy information |
|---|
Score = 1336 bits (3457), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 688/1430 (48%), Positives = 945/1430 (66%), Gaps = 80/1430 (5%)
Query: 295 SAMETERLTRLDQELMLLIIKYLEKGPCHEAAKVLTDLVEAKNLLPERYDWEGATHSQTL 354
S M+ E T + EL LI K+L GPC EAA VL +E +LP+R DWEG H+QT
Sbjct: 4 SVMKNE--TVIAPELYFLIAKFLAAGPCREAADVLKRELERAKVLPQRLDWEGHVHNQTF 61
Query: 355 AEVASSHPNVTASFLPKICQRLGPLLDKELKPNFPGLKSLLSGGSQSLLRSEKSLAKSVL 414
E+ + ++ ++ L +IC R+GP+L+KE+ P G SLL G QSLLR+ + + +
Sbjct: 62 EELEKKYSHIGSNHLLQICARIGPVLEKEVPPCISGAISLLGAGRQSLLRTHEDVQHQMH 121
Query: 415 SSYDYIARQHGTSLL-VPNSVKVHNTVNVLRSREYSGPLSRSLMISSHKYSNLRQHYVNL 473
+ Y R G L P S+ V N V+VL+ RE SGPLSR I + Y+ ++ + L
Sbjct: 122 TITSYSGRLGGKPFLDSPYSLLVPNIVHVLQGRENSGPLSRREAIPTKFYNKMQLYRHTL 181
Query: 474 GHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILL 533
GHLSAV+CVLFD+ G+ I+TGADDLL+K+W + DG+LLAT RG S EI DIA++ N LL
Sbjct: 182 GHLSAVYCVLFDRTGKYIITGADDLLVKVWSSIDGRLLATFRGASAEIMDIAVNFDNTLL 241
Query: 534 AAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKY 593
AAG++D+ +R+W QT++P++VL GH G+IT VNFCP+ NG YL STSTDG + FW +
Sbjct: 242 AAGSLDRILRVWCFQTMSPVAVLSGHSGMITSVNFCPISCNGVYYLVSTSTDGSVAFWSH 301
Query: 594 KLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSP 653
+ +P+ ++E++RPG A ++C+SFSPGG F+A GS DHHVRVY M G + P
Sbjct: 302 TKKGNERAIFQPKPIQYHEKMRPGQAQMICASFSPGGAFMAAGSADHHVRVYSMLGDEGP 361
Query: 654 LGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKE 713
+LEVE HSD VDSIQW+H+ L+F+SGS+DGTA +W+++ QW + RL M T LP E
Sbjct: 362 CRVLEVEAHSDTVDSIQWAHNGLKFISGSKDGTANVWHFEQQQWMYKRLLMTTKLPGESE 421
Query: 714 TSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESH 773
T D++NKK KVTMV+WD SD WVITA+N + +K+W+A +G+LV++L+GH +EVFVLESH
Sbjct: 422 TEDDSNKKAKVTMVSWDVSDEWVITAVN-DSCLKVWNAKSGELVKILRGHKDEVFVLESH 480
Query: 774 PFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTD 833
P D RV+LSAGHDG +IIWD+L+++ F N +EGQG GA+FD KWSPDGT A TD
Sbjct: 481 PIDPRVILSAGHDGQLIIWDVLNTEP--IACFQNFIEGQGNGAVFDAKWSPDGTMLAATD 538
Query: 834 SYGHLLVYGLG-GFKRPQNIPRELFFHTDYRTLNRPNGLFEPTYDEVTNLPPHLMPPPFL 892
S+GHLL+YG G G ++ + +P+ELFFHTDYR L R + DE T PHLMPPPFL
Sbjct: 539 SHGHLLIYGFGSGVEKLKIVPKELFFHTDYRPLIRDANNY--VLDEQTQTAPHLMPPPFL 596
Query: 893 VDLNGTPYPPEVQRLVPGRENADDTELLPDITTNDDGHVEIVEG-----SERNGERPVEV 947
VD++G PYPP +QRLVPGREN +L+P+I G E++EG N ++ +E
Sbjct: 597 VDVDGNPYPPALQRLVPGRENCRGEQLVPNIAVGAGGMQEVIEGLPAQEPRSNIDQLIEA 656
Query: 948 EGQRH--------YNDHGHVYIQTSHVHVLRS----RANGESSAATEGTSPSGTA----- 990
QR D V + S R+ + EG S
Sbjct: 657 LAQRQNINADAESAADEREENAAEQPVRQMASPRGSRSGLRRAGDVEGVRQSSGNWQRDN 716
Query: 991 PTAQNKNFVKR-LPLSQHKIVVERINAFAEIESEEFIKESKKL---FDSSTTTQPLV--- 1043
T NK + R + + + ++ ++A AE+E E +E +K ++ T+ +
Sbjct: 717 TTPWNKPLLARPMNPAVRETQIKVLHATAEMELENLKREMRKRPQPVSNTANTEDNIGSR 776
Query: 1044 VKKEKKKKVVRQA-RTRAEYSEHIQDQ-YEDPDNLSLSGSEESASDSDQSQVDVSDLCES 1101
+ K+ + R RTRA E +D +E+PDN+ +GS S++ +D + + DLC
Sbjct: 777 IANRKRNRTTRHGYRTRATRGEEQEDDDFENPDNVGTTGSSASSNSNDSTAHE-EDLCSD 835
Query: 1102 SSSSGGTSSSDYSDWIHE-GVNLEPPKRVRRHTKVKPIQVSLPKQL------------IP 1148
SS+S SS++YSDWI + G+NLEPPKR +R VK ++ P + IP
Sbjct: 836 SSTS--ESSTEYSDWIADHGLNLEPPKRSKRK-PVKKRSLTPPSDMDRRRNRRPRKKDIP 892
Query: 1149 -----EEVPDIYKPSDWLAEVVPKKAPYYPQMGDEVMFFKQGYQKYVDAVRSKGIYELSR 1203
+++PD+++PS+WL E++P+KAPYYPQMGDE+++F+QG+Q Y+DAVR+K +YEL
Sbjct: 893 LSTGIDDIPDVFRPSEWLTEIIPRKAPYYPQMGDEIVYFRQGHQFYLDAVRNKKVYELGP 952
Query: 1204 LRSSPWGNLILQEPELVKVVGIKYEIAPPRMCCLKLAVMKPNGKLTNEFFNIKYHDMPDV 1263
R PW + ++ E VKVVGIKYEI PPR+CCLKLA+M +G+LT E F IKYHDM DV
Sbjct: 953 -RCEPWNKVNIRAQEFVKVVGIKYEIRPPRLCCLKLALMDEDGRLTGENFTIKYHDMADV 1011
Query: 1264 IDFFVLRQIYETAIAREWNVGDRFCSMIDDAWWWGTIEG-KPSPTKSP---FLGYKILWD 1319
+DF VLRQ ++TA+AR W+ GDRF MIDD WW G I+ +P P F+ +++ WD
Sbjct: 1012 LDFLVLRQTFDTALARSWSEGDRFRCMIDDGWWMGQIQSMEPLDEDFPESFFMCFRVRWD 1071
Query: 1320 NNERENLSPWDLEPPKEGKEATEPGGSLPVEPEEIQELLYHPRPDEWPQGDRDATCEKII 1379
N E E +SPWDLEP E + E GG++PV PEEI+ +LY P +EWP GDR+ATC +II
Sbjct: 1072 NGEYERMSPWDLEPIDENRLPAELGGAVPVLPEEIRTILYQPHAEEWPMGDREATCRRII 1131
Query: 1380 TGLEEVMGLSVAEPFLVPVDISQYPAYAYVVEYPVDLTTLRARFQNRFYRRITSAQFDVR 1439
GL++VM L++AEPF+ PVD++ YPAYA+VVEYP+DLTT++ARF+N FYRRITSAQFDVR
Sbjct: 1132 RGLDQVMSLAIAEPFMAPVDLNAYPAYAFVVEYPIDLTTIKARFENNFYRRITSAQFDVR 1191
Query: 1440 YLAANAEKFNEPHSNIVKYARIITDLLLRIIKEPNPVDVPVVYHELLQNYETSSSEEEEE 1499
YLA NAE+FNEPHS IVK+ARI+TDL LRIIKE +DVP +YH+L+ Y +S S E +
Sbjct: 1192 YLATNAEQFNEPHSQIVKHARIVTDLCLRIIKETTEIDVPALYHQLVDTYHSSES-EVDV 1250
Query: 1500 EDSKSRQRRVRPTAVTRAQREAMNQKKLKRPFNWKNECREVLETLWVCPDSEPFRKPVDK 1559
ED+K+ RP+ T+ + N + + +WK CR++LETLW C DS PFR+PVD+
Sbjct: 1251 EDTKN-----RPSTSTQRATSSRNLRSPEVSNDWKVACRQLLETLWQCEDSIPFREPVDR 1305
Query: 1560 LDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQNKRSKIYIMT 1619
L+HPDY +I+ PMDL T++E+L G NYE+P++F KD++ +F NSRNYN NKRS+IY MT
Sbjct: 1306 LEHPDYHQIIDTPMDLRTVKEDLLGGNYETPLEFAKDMRLIFTNSRNYNTNKRSRIYSMT 1365
Query: 1620 TRLSEFAEEHLRRLTVRWNSHKNKENKKDSKRGEKKIKRMKRRRRKIRRT 1669
RLS EEH+R++ W S + + N + +G K RR K+R T
Sbjct: 1366 IRLSAMFEEHMRKIISNWKSARRRNNNTKNTKG-------KGRRGKVRLT 1408
|
Source: Apis florea Species: Apis florea Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|340709156|ref|XP_003393179.1| PREDICTED: PH-interacting protein-like [Bombus terrestris] | Back alignment and taxonomy information |
|---|
Score = 1332 bits (3448), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 694/1448 (47%), Positives = 948/1448 (65%), Gaps = 81/1448 (5%)
Query: 294 MSAMETERLTRLDQELMLLIIKYLEKGPCHEAAKVLTDLVEAKNLLPERYDWEGATHSQT 353
M T+ T + EL LI K+L GPC EAA VL +E +LP+R DW G H+QT
Sbjct: 1 MEGSVTKNETAIAPELYFLIAKFLAAGPCREAADVLKRELERAKVLPQRLDWGGHVHNQT 60
Query: 354 LAEVASSHPNVTASFLPKICQRLGPLLDKELKPNFPGLKSLLSGGSQSLLRSEKSLAKSV 413
E+ + ++ ++ L +IC R+GP+L+KE+ P PG SLL G QSLLR+ + + + V
Sbjct: 61 FEELEKKYSHIGSNHLLQICARIGPVLEKEVPPCIPGAISLLGAGRQSLLRTHEDVQRQV 120
Query: 414 LSSYDYIARQHGTSLLV-PNSVKVHNTVNVLRSREYSGPLSRSLMISSHKYSNLRQHYVN 472
Y R G L P S+ V N V+VL+ RE SGPL R I + Y+ ++ +
Sbjct: 121 HGIISYSGRLGGKPFLASPYSLSVPNIVHVLQGRENSGPLGRREAIPTKFYNKMQLYRHT 180
Query: 473 LGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNIL 532
LGHLSAV+CVLFD+ G+ I+TGADDLL+K+W + DG+LLAT RG S EI DIA++ N L
Sbjct: 181 LGHLSAVYCVLFDRTGKYIITGADDLLVKVWSSIDGRLLATFRGASAEIMDIAVNFDNTL 240
Query: 533 LAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWK 592
LAAG++D+ +R+W QT++P++VL GH G+IT VNFCP+ NG YL STSTDG + FW
Sbjct: 241 LAAGSLDRILRVWCFQTMSPVAVLSGHSGMITSVNFCPISCNGVYYLVSTSTDGSVAFWS 300
Query: 593 YKLDIDISKTVFH-EPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVD 651
+ + + VF +P+ ++E++RPG A ++C+SFSPGG F+A GS DHHVRVY M G D
Sbjct: 301 HTKKGN-ERAVFQPKPIQYHEKMRPGQAQMICASFSPGGAFMAAGSADHHVRVYAMLGDD 359
Query: 652 SPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHT 711
P +LEVE HSD VDSIQW+H+ L+F+SGS+DGTA +W+++ QW + RL M T LP
Sbjct: 360 GPCRVLEVEAHSDTVDSIQWAHNGLKFISGSKDGTANVWHFEQQQWIYKRLLMTTKLPGE 419
Query: 712 KETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLE 771
ET D++NKK KVTMV+WD SD WVITA+N + +K+W+A +G+LV++L+GH +EVFVLE
Sbjct: 420 SETEDDSNKKAKVTMVSWDVSDEWVITAVN-DSCLKVWNAKSGELVKILRGHKDEVFVLE 478
Query: 772 SHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCAL 831
SHP D RV+LSAGHDG +IIWD+L+++ F N +EGQG GA+FD KWSPDGT A
Sbjct: 479 SHPIDPRVILSAGHDGQLIIWDVLNTEP--IACFQNFIEGQGNGAVFDAKWSPDGTMLAA 536
Query: 832 TDSYGHLLVYGLG-GFKRPQNIPRELFFHTDYRTLNRPNGLFEPTYDEVTNLPPHLMPPP 890
TDS+GHLL+YG G G ++ + +P+ELFFHTDYR L R + DE T PHLMPPP
Sbjct: 537 TDSHGHLLIYGFGSGVEKLKIVPKELFFHTDYRPLIRDANNY--VLDEQTQTAPHLMPPP 594
Query: 891 FLVDLNGTPYPPEVQRLVPGRENADDTELLPDITTNDDGHVEIVEG-----SERNGERPV 945
FLVD++G PYPP +QRLVPGREN +L+P+I G E++EG N ++ +
Sbjct: 595 FLVDVDGNPYPPALQRLVPGRENCRGEQLVPNIAVGAGGMQEVIEGLPAQEPRSNIDQLI 654
Query: 946 EVEGQRHY-----------NDHGHVYIQTSHVHVLR-SRANGESSAATEGTSPSGTA--- 990
E QR D + R SR+ + EG S
Sbjct: 655 EALAQRQNINADAENAADERDENAAEQPVRQMASPRGSRSGLRRAGDVEGVRQSSGNWQR 714
Query: 991 --PTAQNKNFVKR-LPLSQHKIVVERINAFAEIESEEFIKESKKL---FDSSTTTQPLV- 1043
T NK + R + + + + ++A AE+E E +E +K ++ T+ +
Sbjct: 715 DNTTPWNKPILARPMNPAIRETQFKTLHATAEMELENLKREMRKRPQPVSNTANTEGNIG 774
Query: 1044 --VKKEKKKKVVRQA-RTRAEYSEHIQD-QYEDPDNLSLSGSEESASDSDQSQVDVSDLC 1099
+ K+ + R RTRA SE +D ++E+PDN + +GS S++ +D + + DLC
Sbjct: 775 SRIANRKRNRTTRHGYRTRATRSEEQEDDEFENPDNAATTGSSASSNSNDSTAHE-EDLC 833
Query: 1100 ESSSSSGGTSSSDYSDWIHE-GVNLEPPKRVRRHTKVKPIQVSLPKQL------------ 1146
SS+S SS++YSDWI + G+NLEPPKR +R VK ++ P +
Sbjct: 834 SDSSTS--ESSTEYSDWIADHGLNLEPPKRSKRK-PVKKRSLTPPSDMDKRRNRRPRKKD 890
Query: 1147 IP-----EEVPDIYKPSDWLAEVVPKKAPYYPQMGDEVMFFKQGYQKYVDAVRSKGIYEL 1201
IP +++P++++PS+WL E++P+KAPYYPQMGDE+++F+QG+Q Y+DAVR+K +YEL
Sbjct: 891 IPLSTGIDDIPEVFRPSEWLTEIIPRKAPYYPQMGDEIVYFRQGHQFYLDAVRNKKVYEL 950
Query: 1202 SRLRSSPWGNLILQEPELVKVVGIKYEIAPPRMCCLKLAVMKPNGKLTNEFFNIKYHDMP 1261
R PW + ++ E VKVVGIKYEI PPR+CCLKLA+M GKLT E F IKYHDM
Sbjct: 951 GP-RCEPWNKVNIRAQEFVKVVGIKYEIRPPRLCCLKLALMDEYGKLTGENFTIKYHDMA 1009
Query: 1262 DVIDFFVLRQIYETAIAREWNVGDRFCSMIDDAWWWGTIEG-KPSPTKSP---FLGYKIL 1317
DV+DF VLRQ ++TA+AR W+ GDRF MIDD WW G I+ +P P F+ +++
Sbjct: 1010 DVLDFLVLRQTFDTALARSWSEGDRFRCMIDDGWWMGQIQSMEPLDEDFPESFFMCFRVR 1069
Query: 1318 WDNNERENLSPWDLEPPKEGKEATEPGGSLPVEPEEIQELLYHPRPDEWPQGDRDATCEK 1377
WDN E E +SPWDLEP E + GG++PV EEI+ +LY P +EWP GDR+ATC +
Sbjct: 1070 WDNGEYERMSPWDLEPIDENRLPVVLGGAVPVLQEEIRTILYQPHAEEWPMGDREATCRR 1129
Query: 1378 IITGLEEVMGLSVAEPFLVPVDISQYPAYAYVVEYPVDLTTLRARFQNRFYRRITSAQFD 1437
II GL++VM L++AEPF+ PVD++ YP+YA+VVEYP+DLTT++ARF+N FYRRITSAQFD
Sbjct: 1130 IIRGLDQVMSLAIAEPFMAPVDLNAYPSYAFVVEYPIDLTTIKARFENHFYRRITSAQFD 1189
Query: 1438 VRYLAANAEKFNEPHSNIVKYARIITDLLLRIIKEPNPVDVPVVYHELLQNYETSSSEEE 1497
VRYLA NAE+FNEPHS IVK+ARI+TDL LRIIKE +DVP VYH+L+ Y +S S E
Sbjct: 1190 VRYLATNAEQFNEPHSQIVKHARIVTDLCLRIIKETTELDVPAVYHQLVDTYHSSES-EV 1248
Query: 1498 EEEDSKSRQRRVRPTAVTRAQREAMNQKKLKRPFNWKNECREVLETLWVCPDSEPFRKPV 1557
+ ED+K RP+ T+ + N + + +WK CR++LETLW C DS PFR+PV
Sbjct: 1249 DVEDAKD-----RPSTSTQRATSSRNLRSQEASADWKVACRQLLETLWQCEDSIPFREPV 1303
Query: 1558 DKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQNKRSKIYI 1617
D+L+HPDY +I+ PMDL T++E+L G NYE+PI+F KD++ +F NSRNYN NKRS+IY
Sbjct: 1304 DRLEHPDYHQIIDTPMDLRTVKEDLLGGNYETPIEFAKDMRLIFTNSRNYNTNKRSRIYS 1363
Query: 1618 MTTRLSEFAEEHLRRLTVRWNSHKNKENKKDSKRGEKKIKRMKRRR------RKIRRTLV 1671
MT RLS EEH+ R+ W S + + N + +G K KR K R K +
Sbjct: 1364 MTIRLSAMFEEHMGRIISNWKSARRRNNNAKNTKG--KAKRGKVRLTNGTAPSKSKSACS 1421
Query: 1672 ESDDEVLS 1679
+ DDE+ S
Sbjct: 1422 DDDDEINS 1429
|
Source: Bombus terrestris Species: Bombus terrestris Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|350413090|ref|XP_003489876.1| PREDICTED: PH-interacting protein-like [Bombus impatiens] | Back alignment and taxonomy information |
|---|
Score = 1330 bits (3443), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 688/1425 (48%), Positives = 942/1425 (66%), Gaps = 75/1425 (5%)
Query: 294 MSAMETERLTRLDQELMLLIIKYLEKGPCHEAAKVLTDLVEAKNLLPERYDWEGATHSQT 353
M T+ T + EL LI K+L GPC EAA VL +E +LP+R DW G H+QT
Sbjct: 1 MEGSVTKNETAIAPELYFLIAKFLAAGPCREAADVLKRELERAKVLPQRLDWGGHVHNQT 60
Query: 354 LAEVASSHPNVTASFLPKICQRLGPLLDKELKPNFPGLKSLLSGGSQSLLRSEKSLAKSV 413
E+ + ++ ++ L +IC R+GP+L+KE+ P PG SLL G QSLLR+ + + + V
Sbjct: 61 FEELEKKYSHIGSNHLLQICARIGPVLEKEVPPCIPGAISLLGAGRQSLLRTHEDVQRQV 120
Query: 414 LSSYDYIARQHGTSLLV-PNSVKVHNTVNVLRSREYSGPLSRSLMISSHKYSNLRQHYVN 472
Y R G L P S+ V N V+VL+ RE SGPL R I + Y+ ++ +
Sbjct: 121 HGIISYSGRLGGKPFLASPYSLSVPNIVHVLQGRENSGPLGRREAIPTKFYNKMQLYRHT 180
Query: 473 LGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNIL 532
LGHLSAV+CVLFD+ G+ I+TGADDLL+K+W + DG+LLAT RG S EI DIA++ N L
Sbjct: 181 LGHLSAVYCVLFDRTGKYIITGADDLLVKVWSSIDGRLLATFRGASAEIMDIAVNFDNTL 240
Query: 533 LAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWK 592
LAAG++D+ +R+W QT++P++VL GH G+IT VNFCP+ NG YL STSTDG + FW
Sbjct: 241 LAAGSLDRILRVWCFQTMSPVAVLSGHSGMITSVNFCPISCNGVYYLVSTSTDGSVAFWT 300
Query: 593 YKLDIDISKTVFH-EPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVD 651
+ + + VF +P+ ++E++RPG A ++C+SFSPGG F+A GS DHHVRVY M G D
Sbjct: 301 HTKKGN-ERAVFQPKPIQYHEKMRPGQAQMICASFSPGGAFMAAGSADHHVRVYAMLGDD 359
Query: 652 SPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHT 711
P +LEVE HSD VDSIQW+H+ L+F+SGS+DGTA +W+++ QW + RL M T LP
Sbjct: 360 GPCRVLEVEAHSDTVDSIQWAHNGLKFISGSKDGTANVWHFEQQQWIYKRLLMTTKLPGE 419
Query: 712 KETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLE 771
ET D++NKK KVTMV+WD SD WVITA+N + +K+W+A +G+LV++L+GH +EVFVLE
Sbjct: 420 SETEDDSNKKAKVTMVSWDVSDEWVITAVN-DSCLKVWNAKSGELVKILRGHKDEVFVLE 478
Query: 772 SHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCAL 831
SHP D RV+LSAGHDG +IIWD+L+++ F N +EGQG GA+FD KWSPDGT A
Sbjct: 479 SHPIDPRVILSAGHDGQLIIWDVLNTEP--IACFQNFIEGQGNGAVFDAKWSPDGTMLAA 536
Query: 832 TDSYGHLLVYGLG-GFKRPQNIPRELFFHTDYRTLNRPNGLFEPTYDEVTNLPPHLMPPP 890
TDS+GHLL+YG G G ++ + +P+ELFFHTDYR L R + DE T PHLMPPP
Sbjct: 537 TDSHGHLLIYGFGSGVEKLKIVPKELFFHTDYRPLIRDANNY--VLDEQTQTAPHLMPPP 594
Query: 891 FLVDLNGTPYPPEVQRLVPGRENADDTELLPDITTNDDGHVEIVEG-----SERNGERPV 945
FLVD++G PYPP +QRLVPGREN +L+P+I G E++EG N ++ +
Sbjct: 595 FLVDVDGNPYPPALQRLVPGRENCRGEQLVPNIAVGAGGMQEVIEGLPAQEPRSNIDQLI 654
Query: 946 EVEGQRH-----YNDHGHVYIQTSHVHVLRSRANGESSAA-------TEGTSPSGTA--- 990
E QR + + + +R A+ S + EG S
Sbjct: 655 EALAQRQNINADAENAADEREENAAEQPVRQMASPRGSRSGLRRVGDVEGVRQSSGNWQR 714
Query: 991 --PTAQNKNFVKR-LPLSQHKIVVERINAFAEIESEEFIKESKKL---FDSSTTTQPLV- 1043
T NK + R + + + + ++A AE+E E +E +K ++ T+ +
Sbjct: 715 DNTTPWNKPILARPMNPAIRETQFKTLHATAEMELENLKREMRKRPQPVSNTANTEGNIG 774
Query: 1044 --VKKEKKKKVVRQA-RTRAEYSEHIQD-QYEDPDNLSLSGSEESASDSDQSQVDVSDLC 1099
+ K+ + R RTRA SE +D ++E+PDN + +GS S++ +D + + DLC
Sbjct: 775 SRIANRKRNRTTRHGYRTRAMRSEEQEDDEFENPDNAATTGSSASSNSNDSTAHE-EDLC 833
Query: 1100 ESSSSSGGTSSSDYSDWIHE-GVNLEPPKRVRRHTKVKPIQVSLPKQL------------ 1146
SS+S SS++YSDWI + G+NLEPPKR +R VK ++ P +
Sbjct: 834 SDSSTS--ESSTEYSDWIADHGLNLEPPKRSKRK-PVKKRSLTPPSDMDRRRNRRPRKKD 890
Query: 1147 IP-----EEVPDIYKPSDWLAEVVPKKAPYYPQMGDEVMFFKQGYQKYVDAVRSKGIYEL 1201
IP +++P++++PS+WL E++P+KAPYYPQMGDE+++F+QG+Q Y+DAVR+K +YEL
Sbjct: 891 IPLSTGIDDIPEVFRPSEWLTEIIPRKAPYYPQMGDEIVYFRQGHQFYLDAVRNKKVYEL 950
Query: 1202 SRLRSSPWGNLILQEPELVKVVGIKYEIAPPRMCCLKLAVMKPNGKLTNEFFNIKYHDMP 1261
R PW + ++ E VKVVGIKYEI PPR+CCLKLA+M GKLT E F IKYHDM
Sbjct: 951 GP-RCEPWNKVNIRAQEFVKVVGIKYEIRPPRLCCLKLALMDEYGKLTGENFTIKYHDMA 1009
Query: 1262 DVIDFFVLRQIYETAIAREWNVGDRFCSMIDDAWWWGTIEG-KPSPTKSP---FLGYKIL 1317
DV+DF VLRQ ++TA+AR W+ GDRF MIDD WW G I+ +P P F+ +++
Sbjct: 1010 DVLDFLVLRQTFDTALARSWSEGDRFRCMIDDGWWMGQIQSMEPLDEDFPESFFMCFRVR 1069
Query: 1318 WDNNERENLSPWDLEPPKEGKEATEPGGSLPVEPEEIQELLYHPRPDEWPQGDRDATCEK 1377
WDN E E +SPWDLEP E + GG++PV EEI+ +LY P +EWP GDR+ATC +
Sbjct: 1070 WDNGEYERMSPWDLEPIDENRLPVVLGGAVPVLQEEIRTILYQPHAEEWPMGDREATCRR 1129
Query: 1378 IITGLEEVMGLSVAEPFLVPVDISQYPAYAYVVEYPVDLTTLRARFQNRFYRRITSAQFD 1437
II GL++VM L++AEPF+ PVD++ YP+YA+VVEYP+DLTT++ARF+N FYRRITSAQFD
Sbjct: 1130 IIRGLDQVMSLAIAEPFMAPVDLNAYPSYAFVVEYPIDLTTIKARFENHFYRRITSAQFD 1189
Query: 1438 VRYLAANAEKFNEPHSNIVKYARIITDLLLRIIKEPNPVDVPVVYHELLQNYETSSSEEE 1497
VRYLA NAE+FNEPHS IVK+ARI+TDL LRIIKE +DVP VYH+L+ Y +S S E
Sbjct: 1190 VRYLATNAEQFNEPHSQIVKHARIVTDLCLRIIKETTELDVPAVYHQLVDTYHSSES-EV 1248
Query: 1498 EEEDSKSRQRRVRPTAVTRAQREAMNQKKLKRPFNWKNECREVLETLWVCPDSEPFRKPV 1557
+ ED+K RP+ T+ + N + + +WK CR++LETLW C DS PFR+PV
Sbjct: 1249 DVEDAKD-----RPSTSTQRATSSRNLRSQEASADWKVACRQLLETLWQCEDSIPFREPV 1303
Query: 1558 DKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQNKRSKIYI 1617
D+L+HPDY +I+ PMDL T++E+L G NYE+PI+F KD++ +F NSRNYN NKRS+IY
Sbjct: 1304 DRLEHPDYHQIIDTPMDLRTVKEDLLGGNYETPIEFAKDMRLIFTNSRNYNTNKRSRIYS 1363
Query: 1618 MTTRLSEFAEEHLRRLTVRWNSHKNKENKKDSKRGEKKIKRMKRR 1662
MT RLS EEH+ R+ W S + + N + +G K KR K R
Sbjct: 1364 MTIRLSAMFEEHMGRIISNWKSARRRNNNAKNTKG--KAKRGKVR 1406
|
Source: Bombus impatiens Species: Bombus impatiens Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|383862427|ref|XP_003706685.1| PREDICTED: PH-interacting protein-like [Megachile rotundata] | Back alignment and taxonomy information |
|---|
Score = 1318 bits (3412), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 682/1408 (48%), Positives = 935/1408 (66%), Gaps = 72/1408 (5%)
Query: 303 TRLDQELMLLIIKYLEKGPCHEAAKVLTDLVEAKNLLPERYDWEGATHSQTLAEVASSHP 362
T + EL LI K+L GPC EAA VL +E +LP+R DWEG H+QT E+ +
Sbjct: 10 TAIAPELYFLIAKFLAAGPCREAADVLKRELERAKVLPQRLDWEGHVHNQTFEELEKKYS 69
Query: 363 NVTASFLPKICQRLGPLLDKELKPNFPGLKSLLSGGSQSLLRSEKSLAKSVLSSYDYIAR 422
++ + L +IC R+GP+L+KE+ P PG SLL G QSLLR+ + + + + Y R
Sbjct: 70 HIGPNHLLQICARIGPVLEKEVPPCIPGAISLLGVGRQSLLRTHEDIQRQIHGIISYSGR 129
Query: 423 QHGTSLL-VPNSVKVHNTVNVLRSREYSGPLSRSLMISSHKYSNLRQHYVNLGHLSAVFC 481
G + P S+ V N V VL+ RE SGPLSR I + Y+ ++ + LGHLSAV+C
Sbjct: 130 IGGKPFVKSPYSLSVPNIVYVLQGRENSGPLSRREAIPTKFYNKMQLYRHTLGHLSAVYC 189
Query: 482 VLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKT 541
VLFD+ G+ I+TGADDLL+K+W + DG+LLAT RG S EI DIA++ N LLAAG++D+
Sbjct: 190 VLFDRTGKYIITGADDLLVKVWSSIDGRLLATFRGASAEIMDIAVNFDNTLLAAGSLDRI 249
Query: 542 IRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISK 601
+R+W QT++PI+VL GH G+IT VNFCP+ NG YL STSTDG + FW + +
Sbjct: 250 LRVWCFQTMSPIAVLTGHSGMITSVNFCPISCNGVYYLVSTSTDGSVAFWSHTRK-GKER 308
Query: 602 TVFH-EPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVE 660
VF +P+ ++E++RPG A ++C+SFSPGG F+A GS DHHVRVY M G + P +LEVE
Sbjct: 309 AVFQPKPIQYHEKMRPGQAQMICASFSPGGAFMAAGSADHHVRVYAMLGDEGPRRVLEVE 368
Query: 661 EHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNK 720
+SD VDSIQW+HS L+F+SGS+DGTA +W+++ QW + RL M T LP E+ D++NK
Sbjct: 369 ANSDTVDSIQWAHSGLKFISGSKDGTANVWHFEQQQWMYKRLLMTTKLPGETESEDDSNK 428
Query: 721 KIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVL 780
K KVTMV+WD SD WVITA+N + +K+W+A +G+LV+VL+GH +EVFVLESHP D RV+
Sbjct: 429 KAKVTMVSWDVSDEWVITAVN-DSSLKVWNAKSGELVKVLRGHKDEVFVLESHPIDPRVI 487
Query: 781 LSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLV 840
LSAGHDG +IIWD+L+++ F N +EGQG GA+FD KWSPDGT A TDS+GHLL+
Sbjct: 488 LSAGHDGQLIIWDVLNTEP--IACFQNFIEGQGNGAVFDAKWSPDGTMLAATDSHGHLLI 545
Query: 841 YGLG-GFKRPQNIPRELFFHTDYRTLNRPNGLFEPTYDEVTNLPPHLMPPPFLVDLNGTP 899
YG G G ++ + +P+ELFFHTDYR L R + DE T PHLMPPPFLVD++G P
Sbjct: 546 YGFGSGVEKLKIVPKELFFHTDYRPLIRDANNY--VLDEQTQTAPHLMPPPFLVDVDGNP 603
Query: 900 YPPEVQRLVPGRENADDTELLPDITTNDDGHVEIVEG-----SERNGERPVEVEGQR-HY 953
YPP +QRLVPGREN +L+P+I G E++EG N ++ +E QR +
Sbjct: 604 YPPALQRLVPGRENCRGEQLVPNIAVGAGGMQEVIEGLPSQEPRSNIDQLIEALAQRQNI 663
Query: 954 NDHGHVYIQTSH----------VHVLRSRANGESSAATEGTSPSGTA-----PTAQNKNF 998
N G + SR+ + EG S T NK
Sbjct: 664 NVEGEEGVDRDENLAEQPVRQMASPRGSRSGLRRAGDVEGVRQSSGNWQRDNTTPWNKPI 723
Query: 999 VKR-LPLSQHKIVVERINAFAEIESEEFIKESKK----LFDSSTTTQPLV--VKKEKKKK 1051
+ R + + + E ++A AE+E E + +E +K + D++ T + + K+ +
Sbjct: 724 LARPMNPAVRETQFEALDAMAEMELENWRREMRKRPQPISDTANTEGNISSRLANRKRNR 783
Query: 1052 VVRQA-RTRAEYSEHIQD-QYEDPDNLSLSGSEESASDSDQSQVDVSDLCESSSSSGGTS 1109
R RTRA E +D ++E+PDN +GS S++ +D + + DLC SS+S S
Sbjct: 784 TARHGYRTRATRGEEQEDDEFENPDNGGTTGSSSSSNSNDSTAHE-EDLCSDSSTS--ES 840
Query: 1110 SSDYSDWIHE-GVNLEPPKRVRRHTKVKPIQVSLPKQL------------IP-----EEV 1151
S++YSDWI + G+NLEPPKR +R VK ++ P IP +++
Sbjct: 841 STEYSDWIADHGLNLEPPKRSKRKP-VKKRSLTPPSDADKRRSRRPKKKDIPAPNGIDDI 899
Query: 1152 PDIYKPSDWLAEVVPKKAPYYPQMGDEVMFFKQGYQKYVDAVRSKGIYELSRLRSSPWGN 1211
P++++PS+WL E++P+KAPYYPQMGDE+++F+QG+Q Y+DAV++K +YEL R PW
Sbjct: 900 PEVFRPSEWLTEIIPRKAPYYPQMGDEIVYFRQGHQFYLDAVKNKKVYELGP-RCEPWSK 958
Query: 1212 LILQEPELVKVVGIKYEIAPPRMCCLKLAVMKPNGKLTNEFFNIKYHDMPDVIDFFVLRQ 1271
+ ++ E VKVVGIKYEI PPR+CCLKLA+M +G+LT E F IKYHDM DV+DF VLRQ
Sbjct: 959 VNIRAQEFVKVVGIKYEIRPPRLCCLKLALMDEDGRLTGENFTIKYHDMADVLDFLVLRQ 1018
Query: 1272 IYETAIAREWNVGDRFCSMIDDAWWWGTIEG-KPSPTKSP---FLGYKILWDNNERENLS 1327
++TA+AR W+ GDRF MIDD WW G I+ +P P F+ +++ WDN E E +S
Sbjct: 1019 TFDTALARSWSEGDRFRCMIDDGWWMGQIQSMEPLDEDFPESFFMCFRVRWDNGEYERMS 1078
Query: 1328 PWDLEPPKEGKEATEPGGSLPVEPEEIQELLYHPRPDEWPQGDRDATCEKIITGLEEVMG 1387
PWDLEP E + E GG++PV PEEIQ +LY P +EWP GDR+ATC +II GL++VM
Sbjct: 1079 PWDLEPIDENRLPAELGGAVPVLPEEIQTILYQPHAEEWPMGDREATCRRIIRGLDQVMS 1138
Query: 1388 LSVAEPFLVPVDISQYPAYAYVVEYPVDLTTLRARFQNRFYRRITSAQFDVRYLAANAEK 1447
L++AEPF+ PVD++ YP YA+VVEYP+DL+T++ARF+N FYRRITSAQFDVRYLA NAE+
Sbjct: 1139 LAIAEPFVAPVDLNIYPTYAFVVEYPIDLSTIKARFENHFYRRITSAQFDVRYLATNAEQ 1198
Query: 1448 FNEPHSNIVKYARIITDLLLRIIKEPNPVDVPVVYHELLQNYETSSSEEEEEEDSKSRQR 1507
FNEPHS IV+ ARI+TDL LRIIKE +DVP +YH+L+ Y +S S E + ED+K
Sbjct: 1199 FNEPHSQIVRRARIVTDLCLRIIKETTELDVPALYHQLVDTYHSSES-EIDMEDAKD--- 1254
Query: 1508 RVRPTAVTRAQREAMNQKKLKRPFNWKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDK 1567
+P+ T+ + N + + +WK CR++LETLW C DS PFR+PVD+L+HPDY +
Sbjct: 1255 --KPSTSTQKASSSRNSRPPEVLDDWKIACRQLLETLWQCEDSIPFREPVDRLEHPDYHQ 1312
Query: 1568 IVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQNKRSKIYIMTTRLSEFAE 1627
I+ PMDL T++E+L G NYE+P+ F KD+K +F NSRNYN NKRS+IY MT RLS E
Sbjct: 1313 IIDTPMDLRTVKEDLLGGNYETPLQFAKDMKLIFTNSRNYNTNKRSRIYSMTIRLSAMFE 1372
Query: 1628 EHLRRLTVRWNSHKNKENKKDSKRGEKK 1655
EH+R++ W S + + N K + +G+ K
Sbjct: 1373 EHMRKIISNWKSARRRNNNKANTKGKGK 1400
|
Source: Megachile rotundata Species: Megachile rotundata Genus: Megachile Family: Megachilidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307214674|gb|EFN89603.1| Bromodomain and WD repeat-containing protein 3 [Harpegnathos saltator] | Back alignment and taxonomy information |
|---|
Score = 1305 bits (3378), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 672/1393 (48%), Positives = 921/1393 (66%), Gaps = 75/1393 (5%)
Query: 308 ELMLLIIKYLEKGPCHEAAKVLTDLVEAKNLLPERYDWEGATHSQTLAEVASSHPNVTAS 367
EL LI K+L GPC EAA L +E +LP R DWEG HSQ+ E+ +P++ +
Sbjct: 15 ELYFLIAKFLAAGPCPEAAAALKRELERAEVLPLRLDWEGHVHSQSFEELERKYPHIGSR 74
Query: 368 FLPKICQRLGPLLDKELKPNFPGLKSLLSGGSQSLLRSEKSLAKSVLSSYDYIARQHGTS 427
L +IC R+GP+L+K++ P PG SLL G QSLLR+ + L + S DY R
Sbjct: 75 HLLQICARIGPVLEKDVPPCVPGAISLLGAGRQSLLRTHEDLTRYTRSIVDYSGRLGAKP 134
Query: 428 LL-VPNSVKVHNTVNVLRSREYSGPLSRSLMISSHKYSNLRQHYVNLGHLSAVFCVLFDK 486
L P S+ V N V VL+ RE SGPLSR I + YS ++ + LGHLSAV+CVLFD+
Sbjct: 135 FLERPGSLSVPNIVRVLQGRENSGPLSRREAIPTKFYSKMQLYRHTLGHLSAVYCVLFDR 194
Query: 487 LGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWN 546
G+ I+TGADDLL+K+W + DG+LL+T RG S EI DIA++ N LLAAG++D+ +R+W
Sbjct: 195 TGKYIITGADDLLVKVWSSIDGRLLSTFRGASAEIMDIAVNFDNTLLAAGSLDRILRVWC 254
Query: 547 LQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHE 606
QT++P++VL GH G+IT VNFCP+ N YL STSTDG + FW + + +
Sbjct: 255 FQTMSPVAVLSGHSGMITSVNFCPIVCNDVYYLVSTSTDGSVAFWSHTQQPNERALFQSK 314
Query: 607 PVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKV 666
P+ ++E++RPG A ++C+SFSPGG F+A GS DH+VRVY M G + P +LE+E HSD V
Sbjct: 315 PIQYHEKMRPGQAQMICASFSPGGAFMAAGSADHNVRVYAMLGDEGPRRVLEIEAHSDTV 374
Query: 667 DSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTM 726
DSIQW+HS LRF+SGS+DGTA +W+++ QW +L M T LP ET D+TNKK KVTM
Sbjct: 375 DSIQWAHSGLRFISGSKDGTANVWHFEQQQWLHKQLLMTTKLPGEPETDDDTNKKAKVTM 434
Query: 727 VAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHD 786
V+WD SD +VITA+N + +K+W+A +G+L++VL+GH +EVFVLESHP D RV+LSAGHD
Sbjct: 435 VSWDVSDEFVITAVN-DSSLKVWNAKSGELIKVLRGHKDEVFVLESHPIDPRVILSAGHD 493
Query: 787 GLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLG-G 845
G +IIWD+L+++ F N +EGQG GA+FD KWSPDGT A TDS+GHLL+YG G G
Sbjct: 494 GQLIIWDVLNTEPMAC--FQNFIEGQGNGAVFDAKWSPDGTMLAATDSHGHLLMYGFGSG 551
Query: 846 FKRPQNIPRELFFHTDYRTLNRPNGLFEPTYDEVTNLPPHLMPPPFLVDLNGTPYPPEVQ 905
+R + IP+ELFFHTDYR L R + + DE T PHLMPPPFLVD++G PYPP +Q
Sbjct: 552 VERLKIIPKELFFHTDYRPLIRDSNNY--VLDEQTQTAPHLMPPPFLVDVDGNPYPPALQ 609
Query: 906 RLVPGRENADDTELLPDITTNDDGHVEIVEG-----SERNGERPVEVEGQRHYNDH-GHV 959
RLVPGREN +L+P+I G E++EG N +R +E QR D G V
Sbjct: 610 RLVPGRENCRGEQLVPNIAVGAGGVQEVIEGLPEQEPRSNIDRLIEALAQRQNIDADGEV 669
Query: 960 YIQTSHVHV----LRSRANGESS-------AATEGTSPSGT-----APTAQNKNFVKR-L 1002
+ +V +R A+ +S EG S + T NK + R +
Sbjct: 670 AAEDRENNVAEQPVRQIASPRASRPGLRRVGDVEGVRQSSGNWQRDSTTPWNKPILARPM 729
Query: 1003 PLSQHKIVVERINAFAEIESEEFIKESKKLFDSSTTTQP-------LVVKKEKKKKVVRQ 1055
+ + ++ + A A++E + + +E ++ S+++T +V +++ +
Sbjct: 730 NTAVRETQIKAVRAMADMELDNWRREMRRRPQSTSSTAANQGNIGSRLVNRKRNRTTRHG 789
Query: 1056 ARTRAEYSEHIQDQYE-DPDNLSLSGSEESASDSDQSQVDVSDLCESSSSSGGTSSSDYS 1114
RTRA E +D+ +PDN+ S S S++ +D + + DLC S+++ SS++YS
Sbjct: 790 YRTRATRGEEQEDEEFENPDNVGTSASSASSNSNDSTAHE-EDLCSDSTTT--DSSTEYS 846
Query: 1115 DWIHE-GVNLEPPKRVRRHTKVKPIQVSLPKQL------------IP----EEVPDIYKP 1157
DWI + G+NLEPPKR +R VK ++ P IP EVP+ Y+P
Sbjct: 847 DWIADHGLNLEPPKRSKRK-PVKKRSLTPPSDTDRRRSRRPKKKEIPVVNGREVPEAYRP 905
Query: 1158 SDWLAEVVPKKAPYYPQMGDEVMFFKQGYQKYVDAVRSKGIYELSRLRSSPWGNLILQEP 1217
S+WL EV+P+KAPYYPQMGDE+++F+QG++ Y+DA+R+K +YELS R PW + ++
Sbjct: 906 SEWLTEVIPRKAPYYPQMGDEIVYFRQGHKLYLDAIRNKKVYELSP-RCEPWTKMNIRAQ 964
Query: 1218 ELVKVVGIKYEIAPPRMCCLKLAVMKPNGKLTNEFFNIKYHDMPDVIDFFVLRQIYETAI 1277
E VKVVGIKYEI PPR+CCLKLA+M +G++T E F IKYHDM DV+DF VLRQ ++TA+
Sbjct: 965 EFVKVVGIKYEIRPPRLCCLKLALMDEDGRMTGENFTIKYHDMADVLDFLVLRQTFDTAL 1024
Query: 1278 AREWNVGDRFCSMIDDAWWWG-TIEGKPSPTKSP---FLGYKILWDNNERENLSPWDLEP 1333
R W+ GD+F MIDD WW G I +P P F+ + + WDN E E +SPWDLEP
Sbjct: 1025 VRSWSEGDKFRCMIDDGWWMGQIISMEPLDEDFPDSFFMCFHVRWDNGEHEQMSPWDLEP 1084
Query: 1334 PKEGKEATEPGGSLPVEPEEIQELLYHPRPDEWPQGDRDATCEKIITGLEEVMGLSVAEP 1393
E + E GG++ V PEEI+ +LY P +EWP GDR+ATC +II GL++VM L++AEP
Sbjct: 1085 VDEDRLPAEIGGAVSVLPEEIRAILYQPHAEEWPMGDREATCRRIIRGLDQVMSLAIAEP 1144
Query: 1394 FLVPVDISQYPAYAYVVEYPVDLTTLRARFQNRFYRRITSAQFDVRYLAANAEKFNEPHS 1453
F+ PVD++ YP YAY+VEYP+DL+T++ARF+N FYRRITSAQFDVRYLA NAE+FNEPHS
Sbjct: 1145 FVAPVDLNTYPTYAYIVEYPIDLSTIKARFENHFYRRITSAQFDVRYLATNAEQFNEPHS 1204
Query: 1454 NIVKYARIITDLLLRIIKEPNPVDVPVVYHELLQNYETSSSEEEEEEDSKSRQRRVRPTA 1513
IVK ARI+TDL LRIIKE +DVP VYH+LL Y +S SE + ++ R +P+
Sbjct: 1205 TIVKQARIVTDLCLRIIKETTQLDVPAVYHQLLDTYHSSESEVDVDDS------RNKPS- 1257
Query: 1514 VTRAQREAMNQKKLKR---PFNWKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVI 1570
T QR + + + L+ +WK CR++LE+LW C DS PFR+PVD+L+HPDY +I+
Sbjct: 1258 -TSKQRSSTSSRNLRSQDISRDWKLACRQLLESLWQCEDSIPFREPVDRLEHPDYHQIID 1316
Query: 1571 APMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQNKRSKIYIMTTRLSEFAEEHL 1630
PMDL T++E+L G NY++P+ F KD+K +F NSRNYN NKRS+IY MT RLS EEH+
Sbjct: 1317 TPMDLRTVKEDLLGGNYDTPVQFAKDMKLIFTNSRNYNTNKRSRIYSMTIRLSAMFEEHM 1376
Query: 1631 RRLTVRWNSHKNK 1643
RR+ W + + +
Sbjct: 1377 RRILSTWKTARKR 1389
|
Source: Harpegnathos saltator Species: Harpegnathos saltator Genus: Harpegnathos Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307166542|gb|EFN60609.1| Bromodomain and WD repeat-containing protein 3 [Camponotus floridanus] | Back alignment and taxonomy information |
|---|
Score = 1285 bits (3325), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 673/1398 (48%), Positives = 914/1398 (65%), Gaps = 75/1398 (5%)
Query: 305 LDQELMLLIIKYLEKGPCHEAAKVLTDLVEAKNLLPERYDWEGATHSQTLAEVASSHPNV 364
+ EL LI K+L GPC EAA VL +E LP R DWEG H+QT E+ + ++
Sbjct: 12 IASELYFLIAKFLAAGPCAEAAAVLKRELEHAKTLPSRLDWEGHVHNQTFEELEKKYSHI 71
Query: 365 TASFLPKICQRLGPLLDKELKPNFPGLKSLLSGGSQSLLRSEKSLAKSVLSSYDYIARQH 424
+ L +IC R+GP+L++E+ P PG SLL G QSLLR+ + + + V + D+ R
Sbjct: 72 GSDHLLQICARIGPVLEREVPPCVPGAISLLGAGKQSLLRTHEDITRCVYNIVDFSTRFG 131
Query: 425 GTSLL-VPNSVKVHNTVNVLRSREYSGPLSRSLMISSHKYSNLRQHYVNLGHLSAVFCVL 483
G LL + S+ V N V VL+ RE SGPLSR I + YS + + LGHLSAV+CVL
Sbjct: 132 GKPLLELSGSLSVPNIVRVLQGRENSGPLSRRQAIPTKFYSKMNLYRRTLGHLSAVYCVL 191
Query: 484 FDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIR 543
FD+ G+ I+TGADDLL+K+W + DG+LLAT RG S EI DIA++ N LLAAG++D+ +R
Sbjct: 192 FDRSGKYIITGADDLLVKVWSSVDGRLLATFRGPSAEIMDIAVNFDNTLLAAGSLDRVLR 251
Query: 544 IWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTV 603
+W QT++P++VL+GH G+IT VNFCP+E NG YL STSTDG + FW Y ++
Sbjct: 252 VWCFQTMSPVAVLMGHTGMITSVNFCPIECNGVYYLVSTSTDGSVAFWSYTKKLNERAVF 311
Query: 604 FHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHS 663
+P+ ++E++RPG A ++C+SFSPGG F+A GS DHHVRVY M G + P +LEVE HS
Sbjct: 312 QTKPIQYHEKMRPGQAQMICASFSPGGAFMAAGSADHHVRVYTMLGDEGPRRVLEVESHS 371
Query: 664 DKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIK 723
D VDSIQW+HS L+F+SGS+DGTA +W+++ QW +L M T L ET D+T+KK K
Sbjct: 372 DTVDSIQWAHSGLKFISGSKDGTANVWHFEQQQWVHKQLLMTTKLSGEPETDDDTSKKAK 431
Query: 724 VTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSA 783
VTMV WD SD +VITA+N ++ +K+W+A +G+L++VL+GH +EVFVLESHP DSR++LSA
Sbjct: 432 VTMVCWDVSDEYVITAVN-DYTLKVWNAKSGELMKVLRGHKDEVFVLESHPIDSRLILSA 490
Query: 784 GHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGL 843
GHDG +IIWD+L+ + F N VEGQG A+FD KWSPDGT A TDS GHLL++G
Sbjct: 491 GHDGQLIIWDVLNIE--SIACFQNSVEGQGNCAIFDAKWSPDGTMLAATDSNGHLLMFGF 548
Query: 844 G-GFKRPQNIPRELFFHTDYRTLNRPNGLFEPTYDEVTNLPPHLMPPPFLVDLNGTPYPP 902
G G + + IP ELFFHTDYR L R + DE T PHLMPPPFLVD++G PYPP
Sbjct: 549 GSGAGKLKIIPTELFFHTDYRPLIRDANNY--VLDEQTQTAPHLMPPPFLVDVDGNPYPP 606
Query: 903 EVQRLVPGRENADDTELLPDITTNDDGHVEIVEG-----SERNGERPVEVEGQR-HYNDH 956
+QRLVPGREN +L+P+I G E++EG N +R +E QR + N
Sbjct: 607 ALQRLVPGRENCRGEQLVPNIAVGAGGMQEVIEGLPEQEPRSNIDRLIEALAQRQNINAD 666
Query: 957 GHVY---------IQTSHVHVLR----SRANGESSAATEGTSPSGT-----APTAQNKNF 998
G I + + SRA EG S T NK
Sbjct: 667 GEAVGAGDDRENNIAEQPIRQIASPRGSRAGLRREGNVEGVRQSSGNWQRDNTTPWNKPI 726
Query: 999 VKR-LPLSQHKIVVERINAFAEIESEEFIKESKKLFDSSTTTQ-------PLVVKKEKKK 1050
+ R + L+ ++ +++ AE+E E + +E ++ +++T +V +++ +
Sbjct: 727 LARPMKLAIKDTQIKAVHSMAEMELENWRREMRRRPQPTSSTAVNQGNIGSRLVNRKRNR 786
Query: 1051 KVVRQARTRAEYS-EHIQDQYEDPDNLSLSGSEESASDSDQSQVDVSDLCESSSSSGGTS 1109
RTRA E +++YE+PDN S S S + +D S DLC S+++ S
Sbjct: 787 TTRHGYRTRATRGEEQEEEEYENPDNTGTSASSASTNSND-STAHEEDLCSDSTTT--DS 843
Query: 1110 SSDYSDWIHE-GVNLEPPKRVRRHTKVKPIQVSLPKQLIPE-----------------EV 1151
S++YSDW+ + G+NLEPPKR +R VK V+ P + EV
Sbjct: 844 STEYSDWMADHGLNLEPPKRSKRK-PVKKRSVTPPSDVDRRRSKRPKKKGVQIANGNCEV 902
Query: 1152 PDIYKPSDWLAEVVPKKAPYYPQMGDEVMFFKQGYQKYVDAVRSKGIYELSRLRSSPWGN 1211
DIY+PS+WL EV+P+KAPYYPQMGDE+++F+QG + Y+DAV++K IYELS R PW
Sbjct: 903 TDIYRPSEWLTEVIPRKAPYYPQMGDEIVYFRQGQKFYLDAVKNKKIYELSP-RCEPWTK 961
Query: 1212 LILQEPELVKVVGIKYEIAPPRMCCLKLAVMKPNGKLTNEFFNIKYHDMPDVIDFFVLRQ 1271
+ ++ E VKVVGIKYEI PPR+CCLKLA+M G+LT + F IKYHDM DV+DF VLRQ
Sbjct: 962 MNIRAQEFVKVVGIKYEIKPPRLCCLKLALMDEGGRLTGQNFTIKYHDMADVLDFLVLRQ 1021
Query: 1272 IYETAIAREWNVGDRFCSMIDDAWWWGTIEG-KPSPTKSP---FLGYKILWDNNERENLS 1327
++TA+AR W+ GD+F MI+D WW G I G +P + P FL +++ WDN E E +S
Sbjct: 1022 TFDTALARSWSEGDKFRCMIEDGWWMGQIVGVEPLDEEFPESFFLCFRVRWDNGEYERMS 1081
Query: 1328 PWDLEPPKEGKEATEPGGSLPVEPEEIQELLYHPRPDEWPQGDRDATCEKIITGLEEVMG 1387
PWDLEP E + G ++PV PEE Q +LY P +EWP GDR+ATC +II GL++VM
Sbjct: 1082 PWDLEPVDEDRIPPVIGDAVPVLPEERQAILYQPHAEEWPMGDREATCRRIIRGLDQVMS 1141
Query: 1388 LSVAEPFLVPVDISQYPAYAYVVEYPVDLTTLRARFQNRFYRRITSAQFDVRYLAANAEK 1447
L++AEPF+VPVD+S YP YAY+VEYP+DL+T++ARF+N FYRRITSAQFDVRYLA NAE+
Sbjct: 1142 LAIAEPFVVPVDLSLYPTYAYIVEYPIDLSTIKARFENHFYRRITSAQFDVRYLATNAEQ 1201
Query: 1448 FNEPHSNIVKYARIITDLLLRIIKEPNPVDVPVVYHELLQNYETSSSEEEEEEDSKSRQR 1507
FNEPHS+IVK ARI+TD+ LRIIK P +DVP VYH+L Y +S SE E E +
Sbjct: 1202 FNEPHSHIVKKARIVTDICLRIIKSPIDLDVPAVYHQLNDTYRSSESETEIETN------ 1255
Query: 1508 RVRPTAVTRAQREAMNQKKLKRPFNWKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDK 1567
+P+ + + N + + +WK CR++LE+LW C DS PFR+PVD+L+HP+Y +
Sbjct: 1256 --KPSTSKQRSTSSRNLRSQQISLDWKLACRQLLESLWQCEDSIPFREPVDRLEHPEYYQ 1313
Query: 1568 IVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQNKRSKIYIMTTRLSEFAE 1627
I+ PMDL T++E+L G NYE+P +F KD+K +F NSRN+N NKRS+IY MT RLS E
Sbjct: 1314 IIDTPMDLRTVKEDLLGGNYETPAEFAKDMKLIFTNSRNFNTNKRSRIYSMTVRLSAMFE 1373
Query: 1628 EHLRRLTVRWNSHKNKEN 1645
EH+RR+ + W S + + +
Sbjct: 1374 EHMRRILLNWKSARRRND 1391
|
Source: Camponotus floridanus Species: Camponotus floridanus Genus: Camponotus Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|332023728|gb|EGI63952.1| PH-interacting protein [Acromyrmex echinatior] | Back alignment and taxonomy information |
|---|
Score = 1264 bits (3270), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 661/1385 (47%), Positives = 900/1385 (64%), Gaps = 98/1385 (7%)
Query: 335 AKNLLPERYDWEGATHSQTLAEVAS-----------------SHPNVTASFLPKICQRLG 377
++ +LP R DWEG HSQ+ E+ S +P++ +++L +IC R+G
Sbjct: 54 SRAVLPARIDWEGNVHSQSFEELVSIAWHRHDMAIGTTRREKKYPHIGSTYLLQICARIG 113
Query: 378 PLLDKELKPNFPGLKSLLSGGSQSLLRSEKSLAKSVLSSYDYIARQHGTSLL-VPNSVKV 436
P+L+KE+ P G+ SLL G QSLLR+ + + + +DY R G L + S+ V
Sbjct: 114 PVLEKEVPPCVHGVISLLGAGRQSLLRTHEDSTRHTYNIFDYSGRFGGKPFLELAGSLSV 173
Query: 437 HNTVNVLRSREYSGPLSRSLMISSHKYSNLRQHYVNLGHLSAVFCVLFDKLGEVIVTGAD 496
N V VL+ RE SGPLSR+ I + YS ++ + LGHLSAV+CVLFD+ G I+TGAD
Sbjct: 174 PNIVRVLQGRENSGPLSRTQAIPTRFYSKMKLYRHTLGHLSAVYCVLFDRTGTYIITGAD 233
Query: 497 DLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVL 556
DLL+K+W + DG+LLAT RG S EI DIA++ N LLAAG++D+ IR+W Q+++P++VL
Sbjct: 234 DLLVKVWSSIDGRLLATFRGASAEIMDIAVNFDNTLLAAGSLDRIIRVWCFQSMSPVAVL 293
Query: 557 VGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFH-EPVMFNERIR 615
GH G+IT +NFCP+ N YL STSTDG + FW + + + VFH +P+ ++E++R
Sbjct: 294 TGHSGMITSINFCPIVCNDVYYLVSTSTDGSVAFWSHTKKSN-ERAVFHTKPIQYHEKMR 352
Query: 616 PGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSH 675
PG A ++C+SFSPGG F+A GS DH+VRVY M G + P +LE+E HSD VDSIQW+HS
Sbjct: 353 PGQAQMICASFSPGGAFMAAGSADHNVRVYAMLGDEGPRRVLEIEAHSDTVDSIQWAHSG 412
Query: 676 LRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRW 735
L+F+SGS+DGTA +W+++ QW +L M LP E D+TNKK +VTMV WD SD +
Sbjct: 413 LKFISGSKDGTANVWHFEQQQWVHKQLLMTAKLPGEPEMEDDTNKKARVTMVCWDVSDEF 472
Query: 736 VITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDIL 795
VITA+N ++ +K+W A +G+L++VL+GH +EVFVLESHP D R++LSAGHDG +IIWD+L
Sbjct: 473 VITAVN-DYTLKVWGAKSGELMKVLRGHKDEVFVLESHPIDPRMILSAGHDGQLIIWDVL 531
Query: 796 SSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLG-GFKRPQNIPR 854
+++ F N VEGQG A+FD KWSPDGT A TDS GHLL+YG G G ++ + +P+
Sbjct: 532 NTEP--MVCFQNFVEGQGNCAIFDAKWSPDGTKLAATDSNGHLLMYGFGCGVEKLKIVPK 589
Query: 855 ELFFHTDYRTLNRPNGLFEPTYDEVTNLPPHLMPPPFLVDLNGTPYPPEVQRLVPGRENA 914
ELFFHTDYR L R + DE T PHLMPPPFLVD++G PYPP +QRLVPGREN
Sbjct: 590 ELFFHTDYRPLIRDGNNY--VLDEQTQTAPHLMPPPFLVDVDGNPYPPALQRLVPGRENC 647
Query: 915 DDTELLPDITTNDDGHVEIVEG-----SERNGERPVEVEGQRH----------YNDHGHV 959
+L+P+I G E++EG N +R +E QR D
Sbjct: 648 RGEQLVPNIAVGAGGMQEVIEGLPEQEPRSNIDRLIEALAQRQNINVDGEAAGAGDDREN 707
Query: 960 YIQTSHVHVLRS----RANGESSAATEGTSPSGTA-----PTAQNKNFVKR-LPLSQHKI 1009
I + + S RA EG S T NK + R + + +
Sbjct: 708 NIAEQPIRQIASPRGSRAGLRREGNVEGVRQSSGNWQRDNTTPWNKPMLARPMNPAVKET 767
Query: 1010 VVERINAFAEIESEEFIKESKKL---FDSSTTTQPLVVKK---EKKKKVVRQARTRAEYS 1063
+ I A A++E + + +E ++ S+ T Q + K K+ + RTRA
Sbjct: 768 QFKMIQAMADMELDSWRREMRRRPQPTSSTATNQGNIGNKLLNRKRNRTRHGYRTRATRD 827
Query: 1064 EHIQDQYEDPDNLSLSGSEESASDSDQSQVDVSDLCESSSSSGGTSSSDYSDWIHE-GVN 1122
E D+YE+ DN S S S++ +D + + D+C S++ SS++YSDWI + G+N
Sbjct: 828 EEDDDEYENLDNAGTSASSASSNSNDSTAHE-EDMCSDSTTE---SSTEYSDWIADHGLN 883
Query: 1123 LEPPKRVRRHTKVKPIQVSLPKQLIP-----------------EEVPDIYKPSDWLAEVV 1165
LEPPKR +R VK V+ P + EVP+IY+PS+WL EV+
Sbjct: 884 LEPPKRSKRK-PVKKRSVTPPSETDRRRSRRPKKKGIQIANGIREVPEIYRPSEWLTEVI 942
Query: 1166 PKKAPYYPQMGDEVMFFKQGYQKYVDAVRSKGIYELSRLRSSPWGNLILQEPELVKVVGI 1225
P+KAPYYPQMGDE+++F+QG++ Y+DA+R+K IYELS R PW + ++ E VKVVGI
Sbjct: 943 PRKAPYYPQMGDEIVYFRQGHKFYLDAIRNKKIYELSP-RCEPWTKINIRAQEFVKVVGI 1001
Query: 1226 KYEIAPPRMCCLKLAVMKPNGKLTNEFFNIKYHDMPDVIDFFVLRQIYETAIAREWNVGD 1285
KYEI PPR+CCLKLA+M +G+L+ + F IKYHDM DV+DF VLRQ ++ A+AR W+ GD
Sbjct: 1002 KYEIRPPRLCCLKLALMDEDGRLSGQNFTIKYHDMADVLDFLVLRQTFDMALARSWSEGD 1061
Query: 1286 RFCSMIDDAWWWGTIEGKPSP----TKSPFLGYKILWDNNERENLSPWDLEPPKEGKEAT 1341
+F MIDD WW G I G ++S F+ +++ WDN E E +SPWDLEP E +
Sbjct: 1062 KFRCMIDDGWWMGQIVGMEPLDEEFSESLFMCFRVRWDNGEYERMSPWDLEPVDEDRVPV 1121
Query: 1342 EPGGSLPVEPEEIQELLYHPRPDEWPQGDRDATCEKIITGLEEVMGLSVAEPFLVPVDIS 1401
E GG++PV PEE Q +LY P +EWP GDR+ATC +II GL++VM L++AEPF+VPVD+S
Sbjct: 1122 EIGGAVPVLPEERQAILYQPHAEEWPMGDREATCRRIIRGLDQVMSLAIAEPFVVPVDLS 1181
Query: 1402 QYPAYAYVVEYPVDLTTLRARFQNRFYRRITSAQFDVRYLAANAEKFNEPHSNIVKYARI 1461
YP YAY+VEYP+DL+T++ARF+N FYRR+TSAQFDVRYLA NAE+FNEPHS+IVK ARI
Sbjct: 1182 LYPTYAYIVEYPIDLSTIKARFENHFYRRVTSAQFDVRYLATNAEQFNEPHSHIVKKARI 1241
Query: 1462 ITDLLLRIIKEPNPVDVPVVYHELLQNYETSSSEEEEEEDSKSRQRRVRP-TAVTRAQRE 1520
+TDL LRIIKE VDVP VYH+L Y +S SEE + E RP T+ R++R+
Sbjct: 1242 VTDLCLRIIKETTDVDVPAVYHQLNDTYHSSESEEVDVE---------RPSTSKVRSKRK 1292
Query: 1521 AMNQKKLKRPFNWKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIRE 1580
+++ + +WK R +LETLW C DS PFR+PVD L+HP+Y +I+ PMDL T++E
Sbjct: 1293 CSLLQEISK--DWKLASRYLLETLWQCEDSIPFREPVDTLEHPEYHQIIDTPMDLRTVKE 1350
Query: 1581 ELRGDNYESPIDFVKDVKRVFHNSRNYNQNKRSKIYIMTTRLSEFAEEHLRRLTVRWNS- 1639
+L G NYE+P +F KD++ +F NSRNYN NKRSKIY MT RLS EEH+RR+ W S
Sbjct: 1351 DLLGGNYETPAEFAKDMRLIFSNSRNYNTNKRSKIYSMTIRLSAMFEEHMRRILTSWKSA 1410
Query: 1640 HKNKE 1644
HK E
Sbjct: 1411 HKLSE 1415
|
Source: Acromyrmex echinatior Species: Acromyrmex echinatior Genus: Acromyrmex Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|345481114|ref|XP_001606427.2| PREDICTED: bromodomain and WD repeat-containing protein 1-like [Nasonia vitripennis] | Back alignment and taxonomy information |
|---|
Score = 1240 bits (3208), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 636/1367 (46%), Positives = 881/1367 (64%), Gaps = 78/1367 (5%)
Query: 332 LVEAKNLLPERYDWEGATHSQTLAEVASSHPNVTASFLPKICQRLGPLLDKELKPNFPGL 391
V +N+LP+R DW+G +H+Q+ E+ + +++ L +IC R+GP+L+KE+ P PG
Sbjct: 41 FVNHRNILPQRLDWQGNSHTQSFEELERKYSHISPLHLLQICSRIGPVLEKEVPPCVPGA 100
Query: 392 KSLLSGGSQSLLRSEKSLAKSVLSSYDYIARQHGTSLLVPNSVKVHNTVNVLRSREYSGP 451
SLL G QSLLR+++ + + + + + R G L++ ++ + +L+ RE SGP
Sbjct: 101 LSLLGAGKQSLLRTQEDMMRFIHNITAFSGRVGGKPLMLNPPCQLPPLIKILQGRENSGP 160
Query: 452 LSRSLMISSHKYSNLRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLL 511
L+R ++ S Y+ ++ + LGHLSAV+CVLFD+ G+ I+TGADDLL+K+W + +G+LL
Sbjct: 161 LTRREVVPSSFYNKMQLYRHTLGHLSAVYCVLFDRTGKYIITGADDLLVKVWSSTNGRLL 220
Query: 512 ATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPL 571
AT RG S EI DIA++ N LLAAG++DK +RIW QT++PI+VL GH G+IT VNFCP+
Sbjct: 221 ATFRGASSEIMDIAVNFDNTLLAAGSLDKILRIWCFQTMSPIAVLSGHTGMITSVNFCPI 280
Query: 572 EVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGL 631
NG NYL +TS+DG + FW + T EP+ ++E++RPG A ++C+SFSPGG
Sbjct: 281 PCNGVNYLVTTSSDGSVAFWAHTKQPGERTTFIPEPIQYHEKMRPGQAQMICASFSPGGA 340
Query: 632 FLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWY 691
F+A GS DHHVRVY M G + P +LEVE HSD VDSIQW+HS LRF+SGS+DGTA +W+
Sbjct: 341 FMAAGSADHHVRVYMMLGNEGPKRVLEVEAHSDTVDSIQWAHSGLRFISGSKDGTANVWH 400
Query: 692 YKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDA 751
++ QW+ L M+T L E +++NK+ KVTMV+WD SD WV+TA+N + +K+W+A
Sbjct: 401 FEQQQWQSTILIMSTKLAGETEPEEDSNKRSKVTMVSWDQSDEWVVTAVN-DCSLKVWNA 459
Query: 752 FNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEG 811
G LV+ LK H +E+FVLESHP D RV+LSAGHDG +IIWD+L++ N ++G
Sbjct: 460 KTGVLVKKLKAHKDEIFVLESHPIDPRVVLSAGHDGQLIIWDVLNNDPIAV--HQNFIQG 517
Query: 812 QGEGALFDGKWSPDGTTCALTDSYGHLLVYGLG-GFKRPQNIPRELFFHTDYRTLNRPNG 870
QG GA+FD KWSPDGT A TDS+GHL++YG G G +R + +P+ELFFHTDYR L R
Sbjct: 518 QGNGAIFDAKWSPDGTMIAATDSHGHLMIYGFGSGIERMKIVPKELFFHTDYRPLIRDVN 577
Query: 871 LFEPTYDEVTNLPPHLMPPPFLVDLNGTPYPPEVQRLVPGRENADDTELLPDITTNDDGH 930
+ DE T PHLMPPPFLVD++G PYPP++Q+LVPGREN +L+P+I G
Sbjct: 578 NY--VLDEQTQTAPHLMPPPFLVDVDGNPYPPQLQKLVPGRENCGGEQLVPNIAVGASGQ 635
Query: 931 VEIVEG---------------SERNGERPVEVEGQR------HYNDHGHVYIQTSHVHVL 969
E++EG + R +E EG H +D +
Sbjct: 636 QEVIEGLPEQEQPRSHIDQLIAALAQRRQIEAEGGGGGGGSVHEDDQQQPNLPRQAASPR 695
Query: 970 RSRANGESSAATEGTSPSGT-----APTAQNKNFVKRLPLSQHKIVVE--RINAFAEIES 1022
R + EG S + T NK + R PL + + ++NA AE+E
Sbjct: 696 GPRPGLRRAGDVEGVRQSSGNWQRDSTTPWNKPILAR-PLKPAVLETQSKQVNAMAEMEM 754
Query: 1023 EEFIKESKKL---FDSSTTTQPLVVKKEKKKKVVRQA-RTRAEYSEHIQDQYEDPDNLSL 1078
E + +E ++ +ST Q + + K+K R RTRA E +++ D D+ S
Sbjct: 755 ECYKREMRRKPQPVSTSTPDQNSSLTRNKRKGTARHGYRTRAAREEEQEEEDFDNDDNSA 814
Query: 1079 SGSEESASDSDQSQVDVSDLCESSSSSGGTSSSDYSDWIHEGVNLEPPKRVRR------- 1131
S + S +++ ++D +SS +D+ D LEPPKR +R
Sbjct: 815 SSGSSNESSANEEELDSESSSSDNSSEYSDWIADHGD------ALEPPKRSKRKPVQKRP 868
Query: 1132 -------------HTKVKPIQVSLPKQLIPEEVPDIYKPSDWLAEVVPKKAPYYPQMGDE 1178
K K + +S+P + EVPDIY+P +WL+EV+P+KAPYYPQMGD+
Sbjct: 869 ATPPSDSDRRKNQRPKKKAMPISVPSSVT--EVPDIYRPPEWLSEVIPRKAPYYPQMGDD 926
Query: 1179 VMFFKQGYQKYVDAVRSKGIYELSRLRSSPWGNLILQEPELVKVVGIKYEIAPPRMCCLK 1238
+++F+QG+++Y+D V+ K IYE++R PW L L+ E VKVVGIKYEI PPR+CCLK
Sbjct: 927 IVYFQQGHKRYLDVVKDKKIYEVNR-SFEPWSKLDLKAQEFVKVVGIKYEIKPPRLCCLK 985
Query: 1239 LAVMKPNGKLTNEFFNIKYHDMPDVIDFFVLRQIYETAIAREWNVGDRFCSMIDDAWWWG 1298
LA G LT + F IKYHD+PDV+DF VLRQ ++ A+ R W+ G+RF MIDD WW G
Sbjct: 986 LAQTDEEGHLTGKSFTIKYHDVPDVLDFLVLRQTFDNALIRNWSEGNRFRCMIDDGWWTG 1045
Query: 1299 TIEG-KPSPTKSP---FLGYKILWDNNERENLSPWDLEPPKEGKEATEPGGSLPVEPEEI 1354
I +P P F+ + I WDN E E +SPWDLEP E + +E GG++PV PEEI
Sbjct: 1046 QIMSVQPHSMDFPGSYFMCFTIRWDNGETEFMSPWDLEPIDEERLPSEVGGAVPVLPEEI 1105
Query: 1355 QELLYHPRPDEWPQGDRDATCEKIITGLEEVMGLSVAEPFLVPVDISQYPAYAYVVEYPV 1414
QE LY P+P+EWP GDRDA C++II GL++VM L++AEPF+ PVD++ YPAYAYVVEYP+
Sbjct: 1106 QETLYQPQPEEWPMGDRDAACQRIIRGLDQVMTLAIAEPFIAPVDLNAYPAYAYVVEYPI 1165
Query: 1415 DLTTLRARFQNRFYRRITSAQFDVRYLAANAEKFNEPHSNIVKYARIITDLLLRIIKEPN 1474
DL+T++ARF+NRFYRRITSAQFDVRYLA NAEKFNEPHS IVK AR++TD+ L+IIK
Sbjct: 1166 DLSTIKARFENRFYRRITSAQFDVRYLATNAEKFNEPHSQIVKQARLVTDICLKIIKNVT 1225
Query: 1475 PVDVPVVYHELLQNYETSSSEEEEEEDSKSRQRRVRPTAVTRAQREAMNQ--KKLKRPFN 1532
D+ +YHEL Y++S SE + EED +R T+ R R ++ K K +
Sbjct: 1226 DHDITALYHELADAYQSSESEVDVEEDDINRPS----TSTQRPSRSVPSRRPKTAKVHKD 1281
Query: 1533 WKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPID 1592
W+ CR++LETLW C DS PFR+PVD+L+HPDY +++ PMDL T++E+L G NYESP +
Sbjct: 1282 WRVACRQLLETLWQCEDSIPFREPVDRLEHPDYHQVIDTPMDLRTVKEDLLGGNYESPSE 1341
Query: 1593 FVKDVKRVFHNSRNYNQNKRSKIYIMTTRLSEFAEEHLRRLTVRWNS 1639
F KD+K +F NSR+YN N RSKIY MT RLS EE++R++ W S
Sbjct: 1342 FAKDMKLIFTNSRSYNTNTRSKIYSMTVRLSAMFEEYMRKIMNNWKS 1388
|
Source: Nasonia vitripennis Species: Nasonia vitripennis Genus: Nasonia Family: Pteromalidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|242019103|ref|XP_002430005.1| WD repeat domain-containing protein, putative [Pediculus humanus corporis] gi|212515063|gb|EEB17267.1| WD repeat domain-containing protein, putative [Pediculus humanus corporis] | Back alignment and taxonomy information |
|---|
Score = 1234 bits (3193), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 652/1387 (47%), Positives = 892/1387 (64%), Gaps = 80/1387 (5%)
Query: 294 MSAMETERLTRLDQELMLLIIKYLEKGPCHEAAKVLTDLVEAKNLLPERYDWEGATHSQT 353
M T+ + L EL LI K+L GPC +A + LT+ +E LLP RYDW+G Q+
Sbjct: 1 MEISNTDHQSFLASELYFLIAKFLSGGPCTKALEALTEELEYNKLLPPRYDWKGNKFPQS 60
Query: 354 LAEVASSHPNVTASFLPKICQRLGPLLDKELKPNFPGLKSLLSGGSQSLLRSEKSLAKSV 413
++++ ++P++ L IC R+ P+LDKE P+ PG+ SLL QSLLR S+ S+
Sbjct: 61 FSQLSVNYPHIGPDHLLAICNRICPILDKEFPPSVPGIVSLLGASRQSLLRIS-SVPHSI 119
Query: 414 LSSYDYIARQHGTSLLVPNSVK-VHNTVNVLRSREYSGPLSRSLMISSHKYSNLRQHYVN 472
S Y AR++G K VH+ R SGP +R + ++ +S+L+ H
Sbjct: 120 PVSR-YSARRNGKPCSDAADFKSVHHM-----GRRNSGPFTRKQAMQTNFFSHLQLHNRT 173
Query: 473 LGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNIL 532
LGHLSAV+C+LFD+ G+ + TGADDLL+K+W G+LLATLRG S EI+D+A++ N L
Sbjct: 174 LGHLSAVYCLLFDRTGQFVFTGADDLLVKVWSTISGRLLATLRGASSEITDMAVNVENTL 233
Query: 533 LAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWK 592
LAAG++D+ +R+W LQ+ AP++VL+GH G+ITGVNFCP YL STSTDG + FW
Sbjct: 234 LAAGSLDRVLRVWCLQSTAPVAVLLGHTGMITGVNFCPGASGDLRYLTSTSTDGSVAFWV 293
Query: 593 YKLDIDISKTVFH-EPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVD 651
Y +T F PV++NE++RPG A ++CSSFSPGG FLA GSGDHHVR+Y M+G +
Sbjct: 294 YNHHPIGQETTFQGRPVIYNEKMRPGGAQMICSSFSPGGSFLAAGSGDHHVRIYNMNGSE 353
Query: 652 SPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHT 711
P I E+E HSD+VDSIQW+H LRFVSGS+DGTAL+W ++ +W +RL+M T LP
Sbjct: 354 GPTRIFEIEAHSDRVDSIQWAHKGLRFVSGSKDGTALVWQFRRQKWVNLRLEMTTKLPGA 413
Query: 712 KETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLE 771
T ++ K +V+MV WD SD++++TA++ + K+WD+ +G L+ +LK H +EVFVLE
Sbjct: 414 PVTEEDGKLKPRVSMVCWDRSDKYIVTAVH-DATFKVWDSHSGKLIHILKAHRDEVFVLE 472
Query: 772 SHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCAL 831
+HPFD ++LSAGHDGLI +WDI ++ + N ++GQG GA+FD KWSPDGT A
Sbjct: 473 AHPFDPSIMLSAGHDGLICVWDI--TRGIDLMQYQNSIDGQGHGAVFDAKWSPDGTMFAA 530
Query: 832 TDSYGHLLVYGLG-GFKRPQNIPRELFFHTDYRTLNRPNGLFEPTYDEVTNLPPHLMPPP 890
TDS+GH+LV+G G G + + +PRELFFHTDYR L R L DE T PHLMPPP
Sbjct: 531 TDSHGHILVFGFGSGSDKLKKLPRELFFHTDYRPLVRDANL--GVLDEQTQTAPHLMPPP 588
Query: 891 FLVDLNGTPYPPEVQRLVPGRENADDTELLPDITTNDDGHVEIVEG-----SERNGERPV 945
FLVD++G PY P++Q+LVPGRE+ +L+P++ ++G E++EG N + +
Sbjct: 589 FLVDVDGCPYSPDLQKLVPGREDCKIEQLVPNVAFGNEGQQEVLEGLPSEPPRSNIDHMI 648
Query: 946 EVEGQRHYNDHGHVYIQTSHVHVLRS-RANGESSAATEGTSPSGTAPTAQNKNFVKRLP- 1003
+ R Y G ++ S RS R +GE + G SG+ T + + +K LP
Sbjct: 649 QALVNRQY---GQSNLRQSSFGSSRSVRRDGEGVRFSSGDWESGSCMTWKARTLLKPLPP 705
Query: 1004 --LSQHKIVVERINAFAEIESEEFIKESKKLFDSSTTTQPLVVKKEKKKKVVRQA-RTRA 1060
L Q ++ +++A A E +EF KES+ T +P++ + K+K R A +TRA
Sbjct: 706 RILEQTRL---KLDAIAAEEMDEFNKESR--LREETPPKPVLDDRPKRKGRRRGAYQTRA 760
Query: 1061 EYSEHIQDQYEDPDNLSLSGSEESASDSDQSQVDVSDLCESSSSSGGTSSSDYSDWIHE- 1119
E+I + E+ +S S +++ S SDL S S +S+YSDWI +
Sbjct: 761 TREENIIENSEN-----VSLSASTSTSSMSDSFANSDL---GSESDSDENSEYSDWIADH 812
Query: 1120 GVNLEPPKRVRRH---------------TKVKPIQVSLPKQLI--PEEVPDIYKPSDWLA 1162
GV+LEPPKR +R K K + P I EVP ++P WL+
Sbjct: 813 GVSLEPPKRSKRKRVPRKISPSPSPPPRRKAKDTKEPNPPPGINGVGEVPFEFQPPKWLS 872
Query: 1163 EVVPKKAPYYPQMGDEVMFFKQGYQKYVDAVRSKGIYELSRLRSSPWGNLILQEPELVKV 1222
EVVP+KAPYYPQMGDE+MFF QGY Y++AVR+K +Y+++ + L L EP LVKV
Sbjct: 873 EVVPRKAPYYPQMGDEIMFFYQGYIYYLEAVRAKQVYKIAGRQG--LSKLKLPEPVLVKV 930
Query: 1223 VGIKYEIAPPRMCCLKLAVMKPNGKLTN--EFFNIKYHDMPDVIDFFVLRQIYETAIARE 1280
VGIKYEI PPR+CCL+LAV+ +G L++ EFFNIKYHDMPDVIDF VL+Q Y+TAI R
Sbjct: 931 VGIKYEIRPPRLCCLRLAVLNDSGSLSDSREFFNIKYHDMPDVIDFLVLKQTYDTAIQRN 990
Query: 1281 WNVGDRFCSMIDDAWWWGTIEGK----PSPTKSPFLGYKILWDNNERENLSPWDLEPPKE 1336
W GDRF MI+D+WW G + K P+ +SPFL + WDN E E +SPWD+EPP
Sbjct: 991 WKPGDRFRCMIEDSWWEGKVVAKRPHDPAAPESPFLSFMTRWDNGEDEPMSPWDMEPPDP 1050
Query: 1337 GKEATEPGGSLPVEPEEIQELLYHPRPDEWPQGDRDATCEKIITGLEEVMGLSVAEPFLV 1396
EPG S+PV PEE Q LLY PR DEWP GDRDATC +II GL +VM L++AEPF+
Sbjct: 1051 SHPPLEPGASVPVLPEETQALLYCPRSDEWPNGDRDATCRRIIVGLNKVMNLAIAEPFIA 1110
Query: 1397 PVDISQYPAYAYVVEYPVDLTTLRARFQNRFYRRITSAQFDVRYLAANAEKFNEPHSNIV 1456
PVD++ YP+YA VEYP+DL+T++AR +NRFYRR+T+ QFDVRYLA NAEKFNE HS IV
Sbjct: 1111 PVDLNHYPSYAMSVEYPIDLSTIKARLENRFYRRLTAVQFDVRYLATNAEKFNEAHSQIV 1170
Query: 1457 KYARIITDLLLRIIKEPNPVDVPVVYHELLQNYETSSSEEEEEEDSKSRQRRVRPTAVTR 1516
K+ARIITDL +RII + DV VYH+L Y +S SE E + D R P+
Sbjct: 1171 KHARIITDLCMRIISDRVETDVGAVYHQLTDTYYSSPSEAESDHDID----RPGPSG--- 1223
Query: 1517 AQREAMNQKKLKRPFNWKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLG 1576
+ N+K + F+WK C ++L +W DS PFR+PVD +HPDY K++ PMDLG
Sbjct: 1224 ---SSSNKKPV---FDWKVACEKLLREMWDRSDSFPFRQPVDITEHPDYLKVIECPMDLG 1277
Query: 1577 TIREELRGDNYESPIDFVKDVKRVFHNSRNYNQNKRSKIYIMTTRLSEFAEEHLRRLTVR 1636
T++EEL+ NY SP DF KD++ +F NS+NYN NKRS+I+ MT RLS E+ ++++ +
Sbjct: 1278 TVKEELQAGNYHSPKDFYKDIRLIFANSKNYNTNKRSRIFSMTVRLSNMFEDRMKQIMFQ 1337
Query: 1637 WNSHKNK 1643
W + + K
Sbjct: 1338 WKTKRRK 1344
|
Source: Pediculus humanus corporis Species: Pediculus humanus Genus: Pediculus Family: Pediculidae Order: Phthiraptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1915 | ||||||
| FB|FBgn0011785 | 2232 | BRWD3 "BRWD3" [Drosophila mela | 0.322 | 0.276 | 0.485 | 2.4e-302 | |
| UNIPROTKB|Q6RI45 | 1802 | BRWD3 "Bromodomain and WD repe | 0.330 | 0.351 | 0.454 | 1.2e-270 | |
| MGI|MGI:3029414 | 1799 | Brwd3 "bromodomain and WD repe | 0.331 | 0.352 | 0.455 | 1.7e-268 | |
| UNIPROTKB|E1BSG1 | 2293 | BRWD1 "Uncharacterized protein | 0.325 | 0.272 | 0.451 | 2.4e-259 | |
| MGI|MGI:1932404 | 1821 | Phip "pleckstrin homology doma | 0.351 | 0.370 | 0.438 | 2.2e-258 | |
| UNIPROTKB|F1MTQ0 | 2322 | BRWD1 "Uncharacterized protein | 0.330 | 0.272 | 0.447 | 2.3e-258 | |
| MGI|MGI:1890651 | 2304 | Brwd1 "bromodomain and WD repe | 0.323 | 0.268 | 0.451 | 1.1e-257 | |
| UNIPROTKB|Q9NSI6 | 2320 | BRWD1 "Bromodomain and WD repe | 0.330 | 0.272 | 0.445 | 2.6e-257 | |
| RGD|1309030 | 2303 | Brwd1 "bromodomain and WD repe | 0.323 | 0.268 | 0.446 | 1.3e-256 | |
| ZFIN|ZDB-GENE-050208-261 | 1805 | phip "pleckstrin homology doma | 0.350 | 0.371 | 0.444 | 3e-255 |
| FB|FBgn0011785 BRWD3 "BRWD3" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 1525 (541.9 bits), Expect = 2.4e-302, Sum P(4) = 2.4e-302
Identities = 310/638 (48%), Positives = 415/638 (65%)
Query: 305 LDQELMLLIIKYLEKGPCHEAAKVLTDLVEAKNLLPERYDWEGATHSQTLAEVASSHPNV 364
L EL LI K+L GP E AKVL +E K +LP R DW+G H QT E+ + ++
Sbjct: 12 LKPELYFLISKFLAAGPLEETAKVLIRELEEKKVLPRRLDWQGNEHEQTFEELERKYKHI 71
Query: 365 TASFLPKICQRLGPLLDKELKPNFPXXXXXXXXXXXXXXXXEKSLAKSVLSSYDYIARQH 424
A+ L +IC RLGPL+D+EL P+ P ++++ S DY R +
Sbjct: 72 GANHLLEICSRLGPLVDRELPPSVPGINSLLGTGRQNLLRTKETVYCH-RSLRDYCTRLN 130
Query: 425 GTSLLVPNSV---KVHNTVNVLRSREYSGPLSRSLMISSHKYSNLRQHYVNLGHLSAVFC 481
G SL P+SV HN VL RE+ G + R L++ + Y + +GHLS+V+C
Sbjct: 131 GVSL--PDSVLTKPTHNLDRVLTGREHGGEVRRKLLVPTDLYRRTKLLRRTVGHLSSVYC 188
Query: 482 VLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKT 541
VLFD+ G I+TGADDLLIK+W A DG+LLATLRG S EI+DIAI+ N +LAAG++D
Sbjct: 189 VLFDRTGRYIITGADDLLIKIWSAADGRLLATLRGASSEITDIAINLDNTMLAAGSLDHI 248
Query: 542 IRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISK 601
+R+W++QT +PI+VL H G+IT VNFCP + YL +TSTDG I FW+Y
Sbjct: 249 LRVWDMQTTSPIAVLSAHTGMITSVNFCPSPRSDLKYLVTTSTDGSIAFWQYSTPRGQKI 308
Query: 602 TVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEE 661
T +P ++E++RPG A ++C++FSPGG+FLA GS DHHVRVY M G D P ILE E
Sbjct: 309 TFAPKPTQYHEKLRPGQAQMMCTTFSPGGIFLAAGSADHHVRVYMM-GEDGPKRILETEA 367
Query: 662 HSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKK 721
++D VDS+QWSH LRF+SGS+DGTA IW ++ QW+ +L M L E E K+
Sbjct: 368 YTDAVDSVQWSHRGLRFISGSKDGTAHIWTFESQQWKSSKLCMTERLASCPEP--EEGKR 425
Query: 722 IKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLL 781
+KVTMVAWDASDR+VITA+N +F IKIWD+ + L +VL+GH +E++VLES+P D VLL
Sbjct: 426 LKVTMVAWDASDRYVITAVN-DFTIKIWDSKSAKLHRVLRGHKDELYVLESNPRDEHVLL 484
Query: 782 SAGHDGLIIIWDILSSKQRGY--KWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLL 839
SAGHDG + +WDI ++G F N ++GQG G++FD KWSPDGT A TDS+GH+L
Sbjct: 485 SAGHDGQVFLWDI----EQGVCVANFLNDIDGQGHGSVFDAKWSPDGTMIAATDSHGHIL 540
Query: 840 VYGLGG-FKRPQNIPRELFFHTDYRTLNRPNGLFEPTYDEVTNLPPHLMPPPFLVDLNGT 898
++GLG ++ + +P ELFFHTD+R L R DE T + PHLMPPPFLVD +G
Sbjct: 541 IFGLGVCIEKYKMLPTELFFHTDFRPLLRDAQ--HHVVDEQTQIMPHLMPPPFLVDADGN 598
Query: 899 PYPPEVQRLVPGRENADDTELLPDITTNDDGHVEIVEG 936
P+P QR VPGRE+ +L+P++T DG V I +G
Sbjct: 599 PHPSRFQRFVPGRESCSLDQLIPNLTVGVDG-VVIDDG 635
|
|
| UNIPROTKB|Q6RI45 BRWD3 "Bromodomain and WD repeat-containing protein 3" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1440 (512.0 bits), Expect = 1.2e-270, Sum P(5) = 1.2e-270
Identities = 299/658 (45%), Positives = 413/658 (62%)
Query: 303 TRLDQELMLLIIKYLEKGPCHEAAKVLTDLVEAKNLLPERYDWEGATHSQTLAEVASSHP 362
T+++ EL LI ++L+ GPC+++A+VL +E L+P R DWEG H ++ ++ +++
Sbjct: 6 TQIEAELYYLIARFLQSGPCNKSAQVLVQELEEHQLIPRRLDWEGKEHRRSFEDLVAANA 65
Query: 363 NVTASFLPKICQRLGPLLDKELKPNFPXXXXXXXXXXXXXXXXEKSLAKSVLSSYDYIAR 422
++ +L KIC+R+GPLLDKE+ + P K ++ + + A
Sbjct: 66 HIPPDYLLKICERIGPLLDKEIPQSVPGVQTLLGVGRQSLLRDAKDCKSTLWNGSAFAAL 125
Query: 423 QHGTSLLVP-NSVKVHNTVNVLRSREYSGPLSRSLMISSHKYSNLRQHYVNLGHLSAVFC 481
G +P N VK N VN+ +R+ +G + S Y +++ H LGHLS+V+C
Sbjct: 126 HRGRPPELPVNYVKPPNVVNITSARQLTGCSRFGHIFPSSAYQHIKMHKRILGHLSSVYC 185
Query: 482 VLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKT 541
V FD+ G I TG+DD L+K+W DG+LLATLRG S EISD+A++ N L+AAG+ DK
Sbjct: 186 VAFDRSGRRIFTGSDDCLVKIWATDDGRLLATLRGHSAEISDMAVNYENTLIAAGSCDKV 245
Query: 542 IRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFN-YLASTSTDGCIGFWKYKLDIDIS 600
+R+W L+T AP++VL GH IT + FCP G N YL ST DG I FW++ +
Sbjct: 246 VRVWCLRTCAPVAVLQGHSASITSIQFCP-STKGTNRYLTSTGADGTICFWQWHV----- 299
Query: 601 KTV-FHE-PVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILE 658
KT+ F + PV F ER RPG I CSSFS GG+F+ TGS DH +R+Y + G + P I E
Sbjct: 300 KTMKFRDRPVKFTERSRPG-VQISCSSFSSGGMFITTGSTDHVIRIYYL-GSEVPEKIAE 357
Query: 659 VEEHSDKVDSIQWSHS--HLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSD 716
+E H+DKV ++Q+ ++ LRFVSGSRDGTA IW Y+ +W+ I LDM T + S
Sbjct: 358 LESHTDKVVAVQFCNNGDSLRFVSGSRDGTARIWQYQQQEWKSIVLDMATKMTGNNLPSG 417
Query: 717 ETN-KKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPF 775
E K+KVTMVAWD D VITA+N NF +K+W++ G L+ L GH +EVFVLE+HPF
Sbjct: 418 EDKITKLKVTMVAWDRYDTTVITAVN-NFLLKVWNSITGQLLHTLSGHDDEVFVLEAHPF 476
Query: 776 DSRVLLSAGHDGLIIIWDI-LSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDS 834
D R++LSAGHDG I IWD+ +K R Y N++EGQG GA+FD K+SPDG A TDS
Sbjct: 477 DQRIILSAGHDGNIFIWDLDRGTKIRNY---FNMIEGQGHGAVFDCKFSPDGNHFACTDS 533
Query: 835 YGHLLVYGLGGFKRPQNIPRELFFHTDYRTLNRPNGLFEPTYDEVTNLPPHLMPPPFLVD 894
+GHLL++G G K + IP ++FFHTDYR L R + DE T PHLMPPPFLVD
Sbjct: 534 HGHLLLFGFGCSKYYEKIPDQMFFHTDYRPLIRDANNY--VLDEQTQQAPHLMPPPFLVD 591
Query: 895 LNGTPYPPEVQRLVPGRENADDTELLPDI--TTNDDGHV-EIVEGSERNGERPVEVEG 949
++G P+P + QRLVPGREN D +L+P + N DG V E V G + N + ++G
Sbjct: 592 VDGNPHPTKFQRLVPGRENCKDEQLIPQLGYVANGDGEVVEQVIGQQTNDQDESILDG 649
|
|
| MGI|MGI:3029414 Brwd3 "bromodomain and WD repeat domain containing 3" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 1449 (515.1 bits), Expect = 1.7e-268, Sum P(4) = 1.7e-268
Identities = 299/657 (45%), Positives = 413/657 (62%)
Query: 303 TRLDQELMLLIIKYLEKGPCHEAAKVLTDLVEAKNLLPERYDWEGATHSQTLAEVASSHP 362
T+++ EL LI ++L+ GPC+++A+VL +E L+P R DWEG H ++ ++ +++
Sbjct: 6 TQIEAELYYLIARFLQSGPCNKSAQVLVQELEEHQLIPRRLDWEGKEHRRSFEDLVAANA 65
Query: 363 NVTASFLPKICQRLGPLLDKELKPNFPXXXXXXXXXXXXXXXXEKSLAKSVLSSYDYIAR 422
++ +L KIC+R+GPLLDKE+ + P K ++ + + A
Sbjct: 66 HIPPDYLLKICERIGPLLDKEIPQSVPGVQTLLGVGRQSLLRDAKDCKSTLWNGSAFAAL 125
Query: 423 QHGTSLLVP-NSVKVHNTVNVLRSREYSGPLSRSLMISSHKYSNLRQHYVNLGHLSAVFC 481
G +P N VK N VN+ +R+ +G S + S Y +++ H LGHLS+V+C
Sbjct: 126 HRGRPPELPVNYVKPPNVVNITSARQLTGCSRFSHVFPSSAYQHIKMHKRILGHLSSVYC 185
Query: 482 VLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKT 541
V FD+ G I TG+DD L+K+W DG+LLATLRG S EISD+A++ N L+AAG+ DK
Sbjct: 186 VAFDRSGRRIFTGSDDCLVKIWATDDGRLLATLRGHSAEISDMAVNYENTLIAAGSCDKV 245
Query: 542 IRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISK 601
+R+W L+T AP++VL GH IT + FCP YL ST DG I FW++ + K
Sbjct: 246 VRVWCLRTCAPVAVLQGHSASITSIQFCPSTKGTTRYLTSTGADGTICFWQWHV-----K 300
Query: 602 TV-FHE-PVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEV 659
T+ F + PV F ER RPG I CSSFS GG+F+ TGS DH +R+Y + G + P I E+
Sbjct: 301 TMKFRDRPVKFTERSRPG-VQISCSSFSSGGMFITTGSTDHVIRIYYL-GSEIPEKIAEL 358
Query: 660 EEHSDKVDSIQWSHS--HLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDE 717
E H+DKV ++Q+ ++ LRFVSGSRDGTA IW Y+ +W+ I LDM T + TS E
Sbjct: 359 ESHTDKVVAVQFCNNGDSLRFVSGSRDGTARIWQYQQQEWKSIVLDMATKMSGNNLTSAE 418
Query: 718 TN-KKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFD 776
K+KVTMVAWD D VITA+N NF +K+W++ G L+ L GH +EVFVLE+HPFD
Sbjct: 419 DKVTKLKVTMVAWDRYDTTVITAVN-NFLLKVWNSVTGQLLHTLSGHDDEVFVLEAHPFD 477
Query: 777 SRVLLSAGHDGLIIIWDI-LSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSY 835
R++LSAGHDG I IWD+ +K R Y N++EGQG GA+FD K+SPDG A TDS+
Sbjct: 478 QRIILSAGHDGNIFIWDLDRGTKIRNY---FNMIEGQGHGAVFDCKFSPDGNHFACTDSH 534
Query: 836 GHLLVYGLGGFKRPQNIPRELFFHTDYRTLNRPNGLFEPTYDEVTNLPPHLMPPPFLVDL 895
GHLL++G G K + IP ++FFHTDYR L R + DE T PHLMPPPFLVD+
Sbjct: 535 GHLLLFGFGCSKYYEKIPDQMFFHTDYRPLIRDANNY--VLDEQTQQAPHLMPPPFLVDV 592
Query: 896 NGTPYPPEVQRLVPGRENADDTELLPDI--TTNDDGHV-EIVEGSERNGERPVEVEG 949
+G P+P + QRLVPGREN D +L+P + N DG V E V G + N + ++G
Sbjct: 593 DGNPHPTKFQRLVPGRENCKDEQLIPQLGYVANGDGEVVEQVIGQQTNDQEESILDG 649
|
|
| UNIPROTKB|E1BSG1 BRWD1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 1413 (502.5 bits), Expect = 2.4e-259, Sum P(4) = 2.4e-259
Identities = 288/638 (45%), Positives = 397/638 (62%)
Query: 305 LDQELMLLIIKYLEKGPCHEAAKVLTDLVEAKNLLPERYDWEGATHSQTLAEVASSHPNV 364
++ EL LI ++L GPC +VL +E LLP+R DWEG H ++ E+ S+ +V
Sbjct: 17 IESELYFLIARFLSTGPCRGTLRVLVQELEQHQLLPKRLDWEGNEHYRSYEELVLSNKHV 76
Query: 365 TASFLPKICQRLGPLLDKELKPNFPXXXXXXXXXXXXXXXXEKSLAKSVLSSYDYIARQH 424
L +IC+R+GP+LDKE+ P+ K +V + A
Sbjct: 77 APDHLLQICKRIGPILDKEIPPSISRVNSLLGAGRQSLLRTAKDCRNTVWKGSAFAALHR 136
Query: 425 GTSLLVP-NSVKVHNTVNVLRSREYSGPLSRSLMISSHKYSNLRQHYVNLGHLSAVFCVL 483
G P N N V V R+R+ +G S Y +++ H LGHLS+V+CV
Sbjct: 137 GRPPEFPVNYGTPPNLVEVYRARQLTGYAKFSTSFPGSMYQHVKMHRRILGHLSSVYCVA 196
Query: 484 FDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIR 543
FD+ G I TG+DD L+K+W +G+L ATLRG S EISD+A++ N ++AAG+ DK IR
Sbjct: 197 FDRTGHRIFTGSDDCLVKIWSTHNGRLFATLRGHSAEISDMAVNYENTMIAAGSCDKMIR 256
Query: 544 IWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTV 603
+W L+T AP++VL GH G IT + F P+ Y+ ST DG + FW++ D S
Sbjct: 257 VWCLRTCAPVAVLHGHTGSITSLQFSPMVKGSLRYMVSTGADGNVCFWQWDTD---SMKF 313
Query: 604 FHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHS 663
+ PV F E+ RPG +LCSSFS GG+FLATGS DH +R+Y G ++P I E+E H+
Sbjct: 314 SNRPVKFTEKPRPG-VQMLCSSFSVGGMFLATGSTDHVIRMYYF-GSETPERIAELESHA 371
Query: 664 DKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIK 723
DKVDSIQ+S+S RF+SGSRDGTA IW ++ ++WR I LDM+ LP + ++ + K
Sbjct: 372 DKVDSIQFSNSGDRFISGSRDGTARIWRFEEAEWRSILLDMSDRLPGDMCSDEDKFMRPK 431
Query: 724 VTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSA 783
VTM+AW+ D +V+TA+N N +K+W++ G L+ L GH +EVFVLE+HPFDSR++LSA
Sbjct: 432 VTMIAWNQDDNYVVTAVN-NHLLKVWNSSTGQLLHDLVGHADEVFVLETHPFDSRIMLSA 490
Query: 784 GHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGL 843
GHDG I IWDI +K K + N++EGQG GA+FD K+SPDG A TDS+GHLL++G
Sbjct: 491 GHDGNIFIWDI--TKGTKTKHYFNMIEGQGHGAVFDCKFSPDGQHFACTDSHGHLLIFGF 548
Query: 844 GGFKRPQNIPRELFFHTDYRTLNRPNGLFEPTYDEVTNLPPHLMPPPFLVDLNGTPYPPE 903
G K + IP ++FFHTDYR L R + + DE T PHLMPPPFLVD++G P+P +
Sbjct: 549 GCSKPYEKIPDQMFFHTDYRPLIRDSNNY--VLDEQTQQAPHLMPPPFLVDVDGNPHPTK 606
Query: 904 VQRLVPGRENADDTELLPD---ITTNDDGHVEIVEGSE 938
QRLVPGREN+ D L+P + T+D VE V G +
Sbjct: 607 YQRLVPGRENSADEHLIPQLGYVATSDGEVVEQVIGQQ 644
|
|
| MGI|MGI:1932404 Phip "pleckstrin homology domain interacting protein" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 1369 (487.0 bits), Expect = 2.2e-258, Sum P(4) = 2.2e-258
Identities = 305/696 (43%), Positives = 408/696 (58%)
Query: 298 ETERLTRLDQELMLLIIKYLEKGPCHEAAKVLTDLVEAKNLLPERYDWEGATHSQTLAEV 357
E + L+ L EL LI ++LE GPC +AA+VL V K LLP R DW G H +T +
Sbjct: 4 ERKGLSELRSELYFLIARFLEDGPCQQAAQVLIREVAEKELLPRRTDWTGKEHPRTYQNL 63
Query: 358 ASSHPNVTASFLPKICQRLGPLLDKELKPNFPXXXXXXXXXXXXXXXXEKSLAKSVLSSY 417
+ ++ L +IC RLGPLL++E+ + P KS K V+
Sbjct: 64 VKYYRHLAPDHLLQICHRLGPLLEQEIPQSVPGVQTLLGAGRQSLLRTNKS-CKHVVWKG 122
Query: 418 DYIARQH-GTSLLVP-NSVKVHNTVNVLRSREYSGPLSRSLMISSHKYSNLRQHYVNLGH 475
+A H G P N + + L SR+ +G ++ + Y +++ H LGH
Sbjct: 123 SALAALHCGRPPESPVNYGSPPSIADTLFSRKLNGKYRLERLVPTAVYQHMKMHKRILGH 182
Query: 476 LSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAA 535
LS+V+CV FD+ G I TG+DD L+K+W DG+LLATLRG + EISD+A++ N ++AA
Sbjct: 183 LSSVYCVTFDRTGRRIFTGSDDCLVKIWATDDGRLLATLRGHAAEISDMAVNYENTMIAA 242
Query: 536 GTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKL 595
G+ DK IR+W L+T AP++VL GH IT + F PL YL+ST DG I FW +
Sbjct: 243 GSCDKMIRVWCLRTCAPLAVLQGHSASITSLQFSPLCSGSKRYLSSTGADGTICFWLW-- 300
Query: 596 DIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLG 655
D K + P F ER RPG ++CSSFS GG+FLATGS DH +RVY G P
Sbjct: 301 DAGTLK-INPRPTKFTERPRPG-VQMICSSFSAGGMFLATGSTDHIIRVYFF-GSGQPEK 357
Query: 656 ILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETS 715
I E+E H+DKVDSIQ+S++ RFVSGSRDGTA IW +K +W+ I LDM T P +
Sbjct: 358 ISELEFHTDKVDSIQFSNTSNRFVSGSRDGTARIWQFKRREWKSILLDMAT-RPAGQNLQ 416
Query: 716 DETNK--KIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESH 773
+K K+KVTMVAWD D VITA+N N +K+W+++ G L+ VL GH +EVFVLE H
Sbjct: 417 GIEDKITKMKVTMVAWDRHDNTVITAVN-NMTLKVWNSYTGQLIHVLMGHEDEVFVLEPH 475
Query: 774 PFDSRVLLSAGHDGLIIIWDILSS-KQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALT 832
PFD RVL SAGHDG +I+WD+ K R Y F N++EGQG GA+FD K SPDG A T
Sbjct: 476 PFDPRVLFSAGHDGNVIVWDLARGVKVRSY--F-NMIEGQGHGAVFDCKCSPDGQHFACT 532
Query: 833 DSYGHLLVYGLGGFKRPQNIPRELFFHTDYRTLNRPNGLFEPTYDEVTNLPPHLMPPPFL 892
DS+GHLL++G G + I ++FFH+DYR L R F DE T PHLMPPPFL
Sbjct: 533 DSHGHLLIFGFGSSSKYDKIADQMFFHSDYRPLIRDANNF--VLDEQTQQAPHLMPPPFL 590
Query: 893 VDLNGTPYPPEVQRLVPGRENADDTELLPDITTNDDGHVEIVEGSERNGERPVEVEGQRH 952
VD++G P+P QRLVPGREN + +L+P + G +++ P++ QR
Sbjct: 591 VDVDGNPHPSRYQRLVPGRENCREEQLIPQMGVTSSGLNQVLSQQANQDISPLDSMIQRL 650
Query: 953 YNDHGHVYIQTSHVHVLR-SRAN-GESSAATEGTSP 986
+ ++ V SR N G S+ +E SP
Sbjct: 651 QQEQD--LRRSGEAGVSNASRVNRGSVSSTSEVHSP 684
|
|
| UNIPROTKB|F1MTQ0 BRWD1 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1412 (502.1 bits), Expect = 2.3e-258, Sum P(4) = 2.3e-258
Identities = 290/648 (44%), Positives = 403/648 (62%)
Query: 305 LDQELMLLIIKYLEKGPCHEAAKVLTDLVEAKNLLPERYDWEGATHSQTLAEVASSHPNV 364
++ EL LI +YL GPC AA+VL +E LLP+R DWEG H+++ E+ S+ +V
Sbjct: 14 IESELYFLIARYLSAGPCRRAAQVLVQELEQYQLLPKRLDWEGNEHNRSYEELVLSNKHV 73
Query: 365 TASFLPKICQRLGPLLDKELKPNFPXXXXXXXXXXXXXXXXEKSLAKSVLSSYDYIARQH 424
L +ICQR+GP+LDKE+ P+ K +V + A
Sbjct: 74 APDHLLQICQRIGPMLDKEIPPSISRVTSLLGAGRQSLLRTAKDCRHTVWKGSAFAALHR 133
Query: 425 GTSLLVP-NSVKVHNTVNVLRSREYSGPLSRSLMISSHKYSNLRQHYVNLGHLSAVFCVL 483
G +P N N V + R ++ +G + S Y +++ H LGHLSAV+CV
Sbjct: 134 GRPPEMPVNYGSPPNLVEIHRGKQLTGCSTFSTAFPGAMYQHIKMHRRILGHLSAVYCVA 193
Query: 484 FDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIR 543
FD+ G I TG+DD L+K+W +G+LL+TLRG S EISD+A++ N ++AAG+ DK IR
Sbjct: 194 FDRTGHRIFTGSDDCLVKIWSTHNGRLLSTLRGHSAEISDMAVNYENTMIAAGSCDKIIR 253
Query: 544 IWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTV 603
+W L+T AP++VL GH G IT + F P+ Y+ ST DG + FW++ L+ S
Sbjct: 254 VWCLRTCAPVAVLQGHTGSITSLQFSPMAKGSQRYMVSTGADGTVCFWQWDLE---SLKF 310
Query: 604 FHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHS 663
P+ F E+ RPG +LCSSFS GG+FLATGS DH +R+Y + G ++P I E+E H+
Sbjct: 311 SPRPLKFTEKPRPG-VQMLCSSFSVGGMFLATGSTDHVIRMYFL-GFEAPEKIAELESHT 368
Query: 664 DKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIK 723
DKVDSIQ+ ++ RF+SGSRDGTA IW ++ +WR I LDM T + +E K K
Sbjct: 369 DKVDSIQFCNNGDRFLSGSRDGTARIWRFEQLEWRSILLDMATRISGDLSLEEERFMKPK 428
Query: 724 VTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSA 783
VTM+AW+ +D V+TA+N + +K+W+++ G L+ L GH +EVFVLE+HPFDSR++LSA
Sbjct: 429 VTMIAWNQNDSIVVTAVN-DHVLKVWNSYTGQLLHNLLGHADEVFVLETHPFDSRIMLSA 487
Query: 784 GHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGL 843
GHDG I IWDI +K K + N++EGQG GA+FD K+S DG A TDS+GHLL++G
Sbjct: 488 GHDGSIFIWDI--TKGTKMKHYFNMIEGQGHGAVFDCKFSQDGQHFACTDSHGHLLIFGF 545
Query: 844 GGFKRPQNIPRELFFHTDYRTLNRPNGLFEPTYDEVTNLPPHLMPPPFLVDLNGTPYPPE 903
G K + IP ++FFHTDYR L R + + DE T PHLMPPPFLVD++G P+P +
Sbjct: 546 GCSKPYEKIPDQMFFHTDYRPLIRDSNNY--VLDEQTQQAPHLMPPPFLVDVDGNPHPTK 603
Query: 904 VQRLVPGRENADDTELLPDI--TTNDDGHV--EIVE-GSERNGERPVE 946
QRLVPGREN+ D L+P + DG V +I+ + NGER E
Sbjct: 604 YQRLVPGRENSADEHLVPQLGYVATSDGEVIEQIISLQTNDNGERSPE 651
|
|
| MGI|MGI:1890651 Brwd1 "bromodomain and WD repeat domain containing 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 1401 (498.2 bits), Expect = 1.1e-257, Sum P(5) = 1.1e-257
Identities = 286/634 (45%), Positives = 396/634 (62%)
Query: 305 LDQELMLLIIKYLEKGPCHEAAKVLTDLVEAKNLLPERYDWEGATHSQTLAEVASSHPNV 364
++ EL LI +YL GPC AA+VL +E LLP+R DWEG H+++ E+ S+ +V
Sbjct: 14 IESELYFLIARYLSAGPCRRAAQVLVQELEQYQLLPKRLDWEGNEHNRSYEELVLSNKHV 73
Query: 365 TASFLPKICQRLGPLLDKELKPNFPXXXXXXXXXXXXXXXXEKSLAKSVLSSYDYIARQH 424
L +ICQR+GP+LDKE+ P+ K +V + A
Sbjct: 74 APDHLLQICQRIGPMLDKEVPPSISRVTSLLGAGRQSLLRTAKDCRHTVWKGSAFAALHR 133
Query: 425 GTSLLVP-NSVKVHNTVNVLRSREYSGPLSRSLMISSHKYSNLRQHYVNLGHLSAVFCVL 483
G +P N + V + R R+ +G + S Y +++ H LGHLSAV+CV
Sbjct: 134 GRPPEMPVNYGPPPSLVEIHRGRQLTGCSTFSTAFPGTMYQHIKMHRRILGHLSAVYCVA 193
Query: 484 FDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIR 543
FD+ G I TG+DD L+K+W +G+LL+TLRG S EISD+A++ N L+AAG+ DK IR
Sbjct: 194 FDRTGHRIFTGSDDCLVKIWSTHNGRLLSTLRGHSAEISDMAVNYENTLIAAGSCDKIIR 253
Query: 544 IWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTV 603
+W L+T AP++VL GH G IT + F P+ Y+ ST DG + FW++ L+ S
Sbjct: 254 VWCLRTCAPVAVLQGHTGSITSLQFSPMAKGPQRYMVSTGADGTVCFWQWDLE---SLKF 310
Query: 604 FHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHS 663
P+ F E+ RPG +LCSSFS GG+FLATGS DH +R+Y + G D+P I E+E H+
Sbjct: 311 SPRPLKFTEKPRPG-VQMLCSSFSVGGMFLATGSTDHVIRMYFL-GFDAPEKIAELESHT 368
Query: 664 DKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIK 723
DKVDSIQ+ ++ RF+SGSRDGTA IW ++ +WR I LDM+ + + +E K K
Sbjct: 369 DKVDSIQFCNNGDRFLSGSRDGTARIWRFEQLEWRSILLDMSARISGDTSSEEERFMKPK 428
Query: 724 VTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSA 783
VTM+AW+ D V+TA+N + +K+W ++ G L+ L GH +EVFVLE+HPFDSR++LSA
Sbjct: 429 VTMIAWNQDDSTVVTAVN-DHVLKVWSSYTGQLLHNLLGHADEVFVLETHPFDSRIMLSA 487
Query: 784 GHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGL 843
GHDG I IWDI +K K + N++EGQG GA+FD K+S DG A TDS+GHLL++G
Sbjct: 488 GHDGSIFIWDI--TKGIKMKHYFNMIEGQGHGAVFDCKFSQDGQHFACTDSHGHLLIFGF 545
Query: 844 GGFKRPQNIPRELFFHTDYRTLNRPNGLFEPTYDEVTNLPPHLMPPPFLVDLNGTPYPPE 903
G K + IP ++FFHTDYR L R + + DE T PHLMPPPFLVD++G P+P +
Sbjct: 546 GCSKPYEKIPDQMFFHTDYRPLIRDSNNY--VLDEQTQQAPHLMPPPFLVDVDGNPHPTK 603
Query: 904 VQRLVPGRENADDTELLPDI--TTNDDGHVEIVE 935
QRLVPGREN+ D L+P + DG E++E
Sbjct: 604 FQRLVPGRENSADEHLVPQLGYVATSDG--EVIE 635
|
|
| UNIPROTKB|Q9NSI6 BRWD1 "Bromodomain and WD repeat-containing protein 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1409 (501.1 bits), Expect = 2.6e-257, Sum P(4) = 2.6e-257
Identities = 289/648 (44%), Positives = 403/648 (62%)
Query: 305 LDQELMLLIIKYLEKGPCHEAAKVLTDLVEAKNLLPERYDWEGATHSQTLAEVASSHPNV 364
++ EL LI +YL GPC AA+VL +E LLP+R DWEG H+++ E+ S+ +V
Sbjct: 14 IESELYFLIARYLSAGPCRRAAQVLVQELEQYQLLPKRLDWEGNEHNRSYEELVLSNKHV 73
Query: 365 TASFLPKICQRLGPLLDKELKPNFPXXXXXXXXXXXXXXXXEKSLAKSVLSSYDYIARQH 424
L +ICQR+GP+LDKE+ P+ K +V + A
Sbjct: 74 APDHLLQICQRIGPMLDKEIPPSISRVTSLLGAGRQSLLRTAKDCRHTVWKGSAFAALHR 133
Query: 425 GTSLLVP-NSVKVHNTVNVLRSREYSGPLSRSLMISSHKYSNLRQHYVNLGHLSAVFCVL 483
G +P N N V + R ++ +G + S Y +++ H LGHLSAV+CV
Sbjct: 134 GRPPEMPVNYGSPPNLVEIHRGKQLTGCSTFSTAFPGTMYQHIKMHRRILGHLSAVYCVA 193
Query: 484 FDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIR 543
FD+ G I TG+DD L+K+W +G+LL+TLRG S EISD+A++ N ++AAG+ DK IR
Sbjct: 194 FDRTGHRIFTGSDDCLVKIWSTHNGRLLSTLRGHSAEISDMAVNYENTMIAAGSCDKIIR 253
Query: 544 IWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTV 603
+W L+T AP++VL GH G IT + F P+ Y+ ST DG + FW++ L+ S
Sbjct: 254 VWCLRTCAPVAVLQGHTGSITSLQFSPMAKGSQRYMVSTGADGTVCFWQWDLE---SLKF 310
Query: 604 FHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHS 663
P+ F E+ RPG +LCSSFS GG+FLATGS DH +R+Y + G ++P I E+E H+
Sbjct: 311 SPRPLKFTEKPRPG-VQMLCSSFSVGGMFLATGSTDHVIRMYFL-GFEAPEKIAELESHT 368
Query: 664 DKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIK 723
DKVDSIQ+ ++ RF+SGSRDGTA IW ++ +WR I LDM T + + +E K K
Sbjct: 369 DKVDSIQFCNNGDRFLSGSRDGTARIWRFEQLEWRSILLDMATRISGDLSSEEERFMKPK 428
Query: 724 VTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSA 783
VTM+AW+ +D V+TA+N + +K+W+++ G L+ L GH +EVFVLE+HPFDSR++LSA
Sbjct: 429 VTMIAWNQNDSIVVTAVN-DHVLKVWNSYTGQLLHNLMGHADEVFVLETHPFDSRIMLSA 487
Query: 784 GHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGL 843
GHDG I IWDI +K K + N++EGQG GA+FD K+S DG A TDS+GHLL++G
Sbjct: 488 GHDGSIFIWDI--TKGTKMKHYFNMIEGQGHGAVFDCKFSQDGQHFACTDSHGHLLIFGF 545
Query: 844 GGFKRPQNIPRELFFHTDYRTLNRPNGLFEPTYDEVTNLPPHLMPPPFLVDLNGTPYPPE 903
G K + IP ++FFHTDYR L R + + DE T PHLMPPPFLVD++G P+P +
Sbjct: 546 GCSKPYEKIPDQMFFHTDYRPLIRDSNNY--VLDEQTQQAPHLMPPPFLVDVDGNPHPTK 603
Query: 904 VQRLVPGRENADDTELLPDI--TTNDDGHV--EIVE-GSERNGERPVE 946
QRLVPGREN+ D L+P + DG V +I+ + N ER E
Sbjct: 604 YQRLVPGRENSADEHLIPQLGYVATSDGEVIEQIISLQTNDNDERSPE 651
|
|
| RGD|1309030 Brwd1 "bromodomain and WD repeat domain containing 1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 1386 (493.0 bits), Expect = 1.3e-256, Sum P(5) = 1.3e-256
Identities = 283/634 (44%), Positives = 394/634 (62%)
Query: 305 LDQELMLLIIKYLEKGPCHEAAKVLTDLVEAKNLLPERYDWEGATHSQTLAEVASSHPNV 364
++ EL LI +YL GPC AA+VL +E LLP+R DWEG H+++ E+ S+ +V
Sbjct: 14 IESELYFLIARYLSAGPCRRAAQVLVQELEQYQLLPKRLDWEGNEHNRSYEELVLSNKHV 73
Query: 365 TASFLPKICQRLGPLLDKELKPNFPXXXXXXXXXXXXXXXXEKSLAKSVLSSYDYIARQH 424
L +ICQR+GP+LDKE P+ K +V + A
Sbjct: 74 APDHLLQICQRIGPMLDKEAPPSISRVTSLLGAGRQSLLRTAKDCRHTVWKGSAFAALHR 133
Query: 425 GTSLLVP-NSVKVHNTVNVLRSREYSGPLSRSLMISSHKYSNLRQHYVNLGHLSAVFCVL 483
G +P N + V++ R ++ +G + S Y +++ H LGHLSAV+CV
Sbjct: 134 GRPPEMPVNYGPPPSLVDIHRGKQLTGCSTFSTAFPGTMYQHIKMHRRILGHLSAVYCVA 193
Query: 484 FDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIR 543
FD+ G I TG+DD L+K+W +G+LL+TLRG S EISD+A++ N L+AAG+ DK IR
Sbjct: 194 FDRTGHRIFTGSDDCLVKIWSTHNGRLLSTLRGHSAEISDMAVNYENTLIAAGSCDKIIR 253
Query: 544 IWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTV 603
+W L+T AP++VL GH G IT + F P+ Y+ ST DG + FW++ L+ S
Sbjct: 254 VWCLRTCAPVAVLQGHTGSITSLQFSPMAKGPQRYMVSTGADGTVCFWQWDLE---SLKF 310
Query: 604 FHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHS 663
P+ F E+ RPG +LCSSFS GG+FLATGS DH +R+Y + G ++P I E+E H+
Sbjct: 311 SPRPLKFTEKPRPG-VQMLCSSFSVGGMFLATGSTDHVIRMYFL-GFEAPEKIAELESHT 368
Query: 664 DKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIK 723
DKVDSIQ+ ++ RF+SGSRDGTA IW ++ +W+ I LDM + +E K K
Sbjct: 369 DKVDSIQFCNNGDRFLSGSRDGTARIWRFEQLEWKSILLDMAARISGDTSAEEERFMKPK 428
Query: 724 VTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSA 783
VTM+AW+ D V+TA+N + +K+W ++ G L+ L GH +EVFVLE+HPFDSR++LSA
Sbjct: 429 VTMIAWNQDDSTVVTAVN-DHVLKVWSSYTGQLLHNLLGHADEVFVLETHPFDSRIMLSA 487
Query: 784 GHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGL 843
GHDG I IWDI +K K + N++EGQG GA+FD K+S DG A TDS+GHLL++G
Sbjct: 488 GHDGSIFIWDI--TKGIKMKHYFNMIEGQGHGAVFDCKFSQDGQHFACTDSHGHLLIFGF 545
Query: 844 GGFKRPQNIPRELFFHTDYRTLNRPNGLFEPTYDEVTNLPPHLMPPPFLVDLNGTPYPPE 903
G K + IP ++FFHTDYR L R + + DE T PHLMPPPFLVD++G P+P +
Sbjct: 546 GCSKPYEKIPDQMFFHTDYRPLIRDSNNY--VLDEQTQQAPHLMPPPFLVDVDGNPHPTK 603
Query: 904 VQRLVPGRENADDTELLPDI--TTNDDGHVEIVE 935
QRLVPGREN+ D L+P + DG E++E
Sbjct: 604 FQRLVPGRENSADEHLVPQLGYVATSDG--EVIE 635
|
|
| ZFIN|ZDB-GENE-050208-261 phip "pleckstrin homology domain interacting protein" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 1407 (500.3 bits), Expect = 3.0e-255, Sum P(3) = 3.0e-255
Identities = 310/698 (44%), Positives = 409/698 (58%)
Query: 296 AMETERLTRLDQELMLLIIKYLEKGPCHEAAKVLTDLVEAKNLLPERYDWEGATHSQTLA 355
A E + + +L EL LI ++LE GPC +AA+ L V+ K LLP+R DW G H +
Sbjct: 2 AAERKHVAQLKSELYFLIARFLEAGPCQDAAETLIREVQQKELLPKRIDWTGKEHPGSYE 61
Query: 356 EVASSHPNVTASFLPKICQRLGPLLDKELKPNFPXXXXXXXXXXXXXXXXEKSLAKSVLS 415
+ + +++ L ++C+R+ PLL++E+ + P KS K V+
Sbjct: 62 NLVKLYRHISPDHLLQVCERVSPLLEREVPASVPGVNSLLGTGRQSVLRTNKS-CKHVVW 120
Query: 416 SYDYIARQHGTSLLVPNSV--KVHNTVNVLRSREYSGPLSRSLMISSHKYSNLRQHYVNL 473
+A H P + N + SR +G ++ + Y +++ H L
Sbjct: 121 KGSALAALHCGRPPEPPVIFGSPPNIAETIHSRRLNGSYRLGQLVPTAVYQHMKMHKRIL 180
Query: 474 GHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILL 533
GHLS+V+CV FD+ G I TG+DD L+K+W DG LLATLRG + EISD+A++ N LL
Sbjct: 181 GHLSSVYCVTFDRTGRRIFTGSDDCLVKIWATDDGHLLATLRGHAAEISDMAVNYENTLL 240
Query: 534 AAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKY 593
AAG+ DK IR+W LQT AP++VL GH IT + F PL +L+ST DG I FW++
Sbjct: 241 AAGSCDKMIRVWCLQTCAPLAVLEGHAASITSLQFSPLCSGNKRFLSSTGADGTICFWQW 300
Query: 594 KLDIDISKTVFHE-PVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDS 652
D F + P F ER RPG ++CSSFS GG+FLATGS DH +RVY G
Sbjct: 301 ----DARTLKFGQRPSKFIERPRPG-VQMICSSFSAGGMFLATGSTDHIIRVYYFGG-GQ 354
Query: 653 PLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLP--H 710
P I E+E H+DKVDSIQ+SHS RFVSGSRDGTA IW + WR I LDM T LP +
Sbjct: 355 PEKISELESHTDKVDSIQFSHSGDRFVSGSRDGTARIWQLQQQDWRSILLDMATKLPGKY 414
Query: 711 TKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVL 770
++ K+KVTMVAWD +D VITA N N +K+W+++ G+L+ VL GH +EVFVL
Sbjct: 415 NPPPLEDKVTKLKVTMVAWDCNDNTVITAAN-NLTLKVWNSYTGNLIHVLMGHEDEVFVL 473
Query: 771 ESHPFDSRVLLSAGHDGLIIIWDILSS-KQRGYKWFHNIVEGQGEGALFDGKWSPDGTTC 829
E HPFDSRVL SAGHDG I+WD+ K R Y N++EGQG GA+FD K SPDG
Sbjct: 474 EPHPFDSRVLFSAGHDGNAIVWDLARGVKIRSY---FNMIEGQGHGAVFDCKCSPDGQHF 530
Query: 830 ALTDSYGHLLVYGLGGFKRPQNIPRELFFHTDYRTLNRPNGLFEPTYDEVTNLPPHLMPP 889
A TDS+GHLL++G G R I ++FFHTDYR L R F DE T PHLMPP
Sbjct: 531 ACTDSHGHLLIFGFGSSSRYDKIADQMFFHTDYRPLIRDAHNF--VLDEQTQQAPHLMPP 588
Query: 890 PFLVDLNGTPYPPEVQRLVPGRENADDTELLPDITTNDDGHVEIVEGSERNGERPVEVEG 949
PFLVD++G P+PP QRLVPGREN + +L+P + G ++V G P++
Sbjct: 589 PFLVDVDGNPHPPRFQRLVPGRENCREEQLIPQMGLTSSGLNQVVSQQAAEGSSPLDSMI 648
Query: 950 QRHYNDHGHVYIQTSHVHVLRSRAN-GESSAATEGTSP 986
QR + Q + SRAN G S+ TE TSP
Sbjct: 649 QRLQQE------QDQRLGS-DSRANRGSVSSPTEVTSP 679
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1915 | |||
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 7e-51 | |
| cd05496 | 119 | cd05496, Bromo_WDR9_II, Bromodomain; WDR9 repeat I | 5e-43 | |
| cd05496 | 119 | cd05496, Bromo_WDR9_II, Bromodomain; WDR9 repeat I | 5e-43 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 7e-39 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 9e-36 | |
| cd05529 | 128 | cd05529, Bromo_WDR9_I_like, Bromodomain; WDR9 repe | 3e-34 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 1e-29 | |
| cd04369 | 99 | cd04369, Bromodomain, Bromodomain | 2e-22 | |
| cd04369 | 99 | cd04369, Bromodomain, Bromodomain | 2e-22 | |
| smart00297 | 107 | smart00297, BROMO, bromo domain | 3e-22 | |
| smart00297 | 107 | smart00297, BROMO, bromo domain | 3e-22 | |
| cd05509 | 101 | cd05509, Bromo_gcn5_like, Bromodomain; Gcn5_like s | 3e-21 | |
| cd05509 | 101 | cd05509, Bromo_gcn5_like, Bromodomain; Gcn5_like s | 3e-21 | |
| cd05529 | 128 | cd05529, Bromo_WDR9_I_like, Bromodomain; WDR9 repe | 2e-18 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 2e-18 | |
| cd05495 | 108 | cd05495, Bromo_cbp_like, Bromodomain, cbp_like sub | 1e-17 | |
| cd05495 | 108 | cd05495, Bromo_cbp_like, Bromodomain, cbp_like sub | 1e-17 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 2e-17 | |
| cd05500 | 103 | cd05500, Bromo_BDF1_2_I, Bromodomain | 2e-17 | |
| cd05500 | 103 | cd05500, Bromo_BDF1_2_I, Bromodomain | 2e-17 | |
| pfam00439 | 84 | pfam00439, Bromodomain, Bromodomain | 2e-16 | |
| pfam00439 | 84 | pfam00439, Bromodomain, Bromodomain | 2e-16 | |
| cd05506 | 99 | cd05506, Bromo_plant1, Bromodomain, uncharacterize | 2e-15 | |
| cd05506 | 99 | cd05506, Bromo_plant1, Bromodomain, uncharacterize | 2e-15 | |
| cd05497 | 107 | cd05497, Bromo_Brdt_I_like, Bromodomain, Brdt_like | 1e-14 | |
| cd05497 | 107 | cd05497, Bromo_Brdt_I_like, Bromodomain, Brdt_like | 1e-14 | |
| pfam00439 | 84 | pfam00439, Bromodomain, Bromodomain | 5e-14 | |
| cd05498 | 102 | cd05498, Bromo_Brdt_II_like, Bromodomain, Brdt_lik | 1e-13 | |
| cd05498 | 102 | cd05498, Bromo_Brdt_II_like, Bromodomain, Brdt_lik | 1e-13 | |
| smart00297 | 107 | smart00297, BROMO, bromo domain | 2e-13 | |
| cd05503 | 97 | cd05503, Bromo_BAZ2A_B_like, Bromodomain, BAZ2A/BA | 2e-13 | |
| cd05503 | 97 | cd05503, Bromo_BAZ2A_B_like, Bromodomain, BAZ2A/BA | 2e-13 | |
| cd05511 | 112 | cd05511, Bromo_TFIID, Bromodomain, TFIID-like subf | 2e-13 | |
| cd05511 | 112 | cd05511, Bromo_TFIID, Bromodomain, TFIID-like subf | 2e-13 | |
| cd05504 | 115 | cd05504, Bromo_Acf1_like, Bromodomain; Acf1_like o | 4e-13 | |
| cd05504 | 115 | cd05504, Bromo_Acf1_like, Bromodomain; Acf1_like o | 4e-13 | |
| cd05505 | 97 | cd05505, Bromo_WSTF_like, Bromodomain; Williams sy | 4e-12 | |
| cd05505 | 97 | cd05505, Bromo_WSTF_like, Bromodomain; Williams sy | 4e-12 | |
| cd04369 | 99 | cd04369, Bromodomain, Bromodomain | 5e-12 | |
| cd05510 | 112 | cd05510, Bromo_SPT7_like, Bromodomain; SPT7_like s | 5e-11 | |
| cd05510 | 112 | cd05510, Bromo_SPT7_like, Bromodomain; SPT7_like s | 5e-11 | |
| cd05499 | 102 | cd05499, Bromo_BDF1_2_II, Bromodomain | 1e-10 | |
| cd05499 | 102 | cd05499, Bromo_BDF1_2_II, Bromodomain | 1e-10 | |
| cd05508 | 99 | cd05508, Bromo_RACK7, Bromodomain, RACK7_like subf | 1e-10 | |
| cd05508 | 99 | cd05508, Bromo_RACK7, Bromodomain, RACK7_like subf | 1e-10 | |
| COG5076 | 371 | COG5076, COG5076, Transcription factor involved in | 2e-10 | |
| COG5076 | 371 | COG5076, COG5076, Transcription factor involved in | 2e-10 | |
| cd05502 | 109 | cd05502, Bromo_tif1_like, Bromodomain; tif1_like s | 5e-10 | |
| cd05502 | 109 | cd05502, Bromo_tif1_like, Bromodomain; tif1_like s | 5e-10 | |
| cd05507 | 104 | cd05507, Bromo_brd8_like, Bromodomain, brd8_like s | 4e-09 | |
| cd05507 | 104 | cd05507, Bromo_brd8_like, Bromodomain, brd8_like s | 4e-09 | |
| COG5076 | 371 | COG5076, COG5076, Transcription factor involved in | 5e-09 | |
| cd05515 | 105 | cd05515, Bromo_polybromo_V, Bromodomain, polybromo | 9e-09 | |
| cd05515 | 105 | cd05515, Bromo_polybromo_V, Bromodomain, polybromo | 9e-09 | |
| cd05503 | 97 | cd05503, Bromo_BAZ2A_B_like, Bromodomain, BAZ2A/BA | 2e-08 | |
| cd05517 | 103 | cd05517, Bromo_polybromo_II, Bromodomain, polybrom | 3e-08 | |
| cd05509 | 101 | cd05509, Bromo_gcn5_like, Bromodomain; Gcn5_like s | 6e-08 | |
| cd05518 | 103 | cd05518, Bromo_polybromo_IV, Bromodomain, polybrom | 1e-07 | |
| cd05518 | 103 | cd05518, Bromo_polybromo_IV, Bromodomain, polybrom | 1e-07 | |
| cd05515 | 105 | cd05515, Bromo_polybromo_V, Bromodomain, polybromo | 4e-07 | |
| cd05499 | 102 | cd05499, Bromo_BDF1_2_II, Bromodomain | 8e-07 | |
| cd05528 | 112 | cd05528, Bromo_AAA, Bromodomain; sub-family co-occ | 2e-06 | |
| cd05528 | 112 | cd05528, Bromo_AAA, Bromodomain; sub-family co-occ | 2e-06 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 2e-06 | |
| cd05498 | 102 | cd05498, Bromo_Brdt_II_like, Bromodomain, Brdt_lik | 3e-06 | |
| PTZ00108 | 1388 | PTZ00108, PTZ00108, DNA topoisomerase 2-like prote | 3e-06 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 4e-06 | |
| cd05511 | 112 | cd05511, Bromo_TFIID, Bromodomain, TFIID-like subf | 8e-06 | |
| cd05507 | 104 | cd05507, Bromo_brd8_like, Bromodomain, brd8_like s | 8e-06 | |
| cd05504 | 115 | cd05504, Bromo_Acf1_like, Bromodomain; Acf1_like o | 9e-06 | |
| PTZ00108 | 1388 | PTZ00108, PTZ00108, DNA topoisomerase 2-like prote | 9e-06 | |
| cd05521 | 106 | cd05521, Bromo_Rsc1_2_I, Bromodomain, repeat I in | 9e-06 | |
| cd05521 | 106 | cd05521, Bromo_Rsc1_2_I, Bromodomain, repeat I in | 9e-06 | |
| cd05512 | 98 | cd05512, Bromo_brd1_like, Bromodomain; brd1_like s | 1e-05 | |
| cd05512 | 98 | cd05512, Bromo_brd1_like, Bromodomain; brd1_like s | 1e-05 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 2e-05 | |
| cd05512 | 98 | cd05512, Bromo_brd1_like, Bromodomain; brd1_like s | 2e-05 | |
| cd05516 | 107 | cd05516, Bromo_SNF2L2, Bromodomain, SNF2L2-like su | 2e-05 | |
| cd05516 | 107 | cd05516, Bromo_SNF2L2, Bromodomain, SNF2L2-like su | 2e-05 | |
| cd05506 | 99 | cd05506, Bromo_plant1, Bromodomain, uncharacterize | 3e-05 | |
| cd05505 | 97 | cd05505, Bromo_WSTF_like, Bromodomain; Williams sy | 3e-05 | |
| cd05508 | 99 | cd05508, Bromo_RACK7, Bromodomain, RACK7_like subf | 3e-05 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 3e-05 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 3e-05 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 5e-05 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 9e-05 | |
| cd05529 | 128 | cd05529, Bromo_WDR9_I_like, Bromodomain; WDR9 repe | 1e-04 | |
| cd05529 | 128 | cd05529, Bromo_WDR9_I_like, Bromodomain; WDR9 repe | 1e-04 | |
| cd05519 | 103 | cd05519, Bromo_SNF2, Bromodomain, SNF2-like subfam | 1e-04 | |
| cd05519 | 103 | cd05519, Bromo_SNF2, Bromodomain, SNF2-like subfam | 1e-04 | |
| cd05519 | 103 | cd05519, Bromo_SNF2, Bromodomain, SNF2-like subfam | 1e-04 | |
| cd05500 | 103 | cd05500, Bromo_BDF1_2_I, Bromodomain | 2e-04 | |
| PLN03237 | 1465 | PLN03237, PLN03237, DNA topoisomerase 2; Provision | 2e-04 | |
| cd05495 | 108 | cd05495, Bromo_cbp_like, Bromodomain, cbp_like sub | 3e-04 | |
| pfam09184 | 285 | pfam09184, PPP4R2, PPP4R2 | 3e-04 | |
| cd05496 | 119 | cd05496, Bromo_WDR9_II, Bromodomain; WDR9 repeat I | 4e-04 | |
| cd05521 | 106 | cd05521, Bromo_Rsc1_2_I, Bromodomain, repeat I in | 4e-04 | |
| COG5076 | 371 | COG5076, COG5076, Transcription factor involved in | 5e-04 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 5e-04 | |
| cd05522 | 104 | cd05522, Bromo_Rsc1_2_II, Bromodomain, repeat II i | 5e-04 | |
| cd05522 | 104 | cd05522, Bromo_Rsc1_2_II, Bromodomain, repeat II i | 5e-04 | |
| cd05513 | 98 | cd05513, Bromo_brd7_like, Bromodomain, brd7_like s | 5e-04 | |
| cd05513 | 98 | cd05513, Bromo_brd7_like, Bromodomain, brd7_like s | 5e-04 | |
| cd05520 | 103 | cd05520, Bromo_polybromo_III, Bromodomain, polybro | 5e-04 | |
| cd05520 | 103 | cd05520, Bromo_polybromo_III, Bromodomain, polybro | 5e-04 | |
| pfam00439 | 84 | pfam00439, Bromodomain, Bromodomain | 8e-04 | |
| cd05501 | 102 | cd05501, Bromo_SP100C_like, Bromodomain, SP100C_li | 8e-04 | |
| cd05501 | 102 | cd05501, Bromo_SP100C_like, Bromodomain, SP100C_li | 8e-04 | |
| smart00297 | 107 | smart00297, BROMO, bromo domain | 9e-04 | |
| cd05497 | 107 | cd05497, Bromo_Brdt_I_like, Bromodomain, Brdt_like | 0.001 | |
| cd05491 | 119 | cd05491, Bromo_TBP7_like, Bromodomain; TBP7_like s | 0.002 | |
| cd05491 | 119 | cd05491, Bromo_TBP7_like, Bromodomain; TBP7_like s | 0.002 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 0.003 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 0.003 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 0.004 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 0.004 | |
| COG5296 | 521 | COG5296, COG5296, Transcription factor involved in | 0.004 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 181 bits (462), Expect = 7e-51
Identities = 95/320 (29%), Positives = 148/320 (46%), Gaps = 37/320 (11%)
Query: 474 GHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILL 533
GH V CV F G+++ TG+ D IK+W G+LL TL+G +G + D+A L
Sbjct: 7 GHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYL 66
Query: 534 AAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKY 593
A+G+ DKTIR+W+L+T + L GH ++ V F P L+S+S D I W
Sbjct: 67 ASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDG----RILSSSSRDKTIKVW-- 120
Query: 594 KLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSP 653
D++ K + +R + +FSP G F+A+ S D ++++ +
Sbjct: 121 --DVETGKCLT--------TLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRT-GKC 169
Query: 654 LGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKE 713
+ L H+ +V+S+ +S + +S S DGT +W + + T H
Sbjct: 170 VATL--TGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKC------LGTLRGHENG 221
Query: 714 TSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESH 773
V VA+ + + + + I++WD G+ VQ L GHTN V L
Sbjct: 222 ----------VNSVAFSPDGYLLASG-SEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWS 270
Query: 774 PFDSRVLLSAGHDGLIIIWD 793
P D + L S DG I IWD
Sbjct: 271 P-DGKRLASGSADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|99928 cd05496, Bromo_WDR9_II, Bromodomain; WDR9 repeat II_like subfamily | Back alignment and domain information |
|---|
Score = 152 bits (386), Expect = 5e-43
Identities = 57/115 (49%), Positives = 81/115 (70%)
Query: 117 NWKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPI 176
+WK +C+E++ +W C DSEPFR+PVD L +PDY I+ PMDLGT++E L G NY+ P+
Sbjct: 5 DWKKQCKELVNLMWDCEDSEPFRQPVDLLKYPDYRDIIDTPMDLGTVKETLFGGNYDDPM 64
Query: 177 DFVKDVKRVFHNSRNYNQNKRSKIYIMTTRLSEFAEEHLRRLTVRWNSHKNKENK 231
+F KDV+ +F NS++Y NKRS+IY MT RLS EEH++++ W S + K
Sbjct: 65 EFAKDVRLIFSNSKSYTPNKRSRIYSMTLRLSALFEEHIKKIISDWKSALKRNEK 119
|
WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. Length = 119 |
| >gnl|CDD|99928 cd05496, Bromo_WDR9_II, Bromodomain; WDR9 repeat II_like subfamily | Back alignment and domain information |
|---|
Score = 152 bits (386), Expect = 5e-43
Identities = 57/115 (49%), Positives = 81/115 (70%)
Query: 1532 NWKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPI 1591
+WK +C+E++ +W C DSEPFR+PVD L +PDY I+ PMDLGT++E L G NY+ P+
Sbjct: 5 DWKKQCKELVNLMWDCEDSEPFRQPVDLLKYPDYRDIIDTPMDLGTVKETLFGGNYDDPM 64
Query: 1592 DFVKDVKRVFHNSRNYNQNKRSKIYIMTTRLSEFAEEHLRRLTVRWNSHKNKENK 1646
+F KDV+ +F NS++Y NKRS+IY MT RLS EEH++++ W S + K
Sbjct: 65 EFAKDVRLIFSNSKSYTPNKRSRIYSMTLRLSALFEEHIKKIISDWKSALKRNEK 119
|
WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. Length = 119 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 147 bits (372), Expect = 7e-39
Identities = 83/326 (25%), Positives = 135/326 (41%), Gaps = 58/326 (17%)
Query: 510 LLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFC 569
L TL+G +G ++ +A LLA G+ D TI++W+L+T + L GH G + V
Sbjct: 1 LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAAS 60
Query: 570 PLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPG 629
YLAS S+D I W + + H +++ +FSP
Sbjct: 61 A----DGTYLASGSSDKTIRLWDLETGECVRTLTGHT------------SYVSSVAFSPD 104
Query: 630 GLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALI 689
G L++ S D ++V+ V++ + + H+D V+S+ +S S S+DGT +
Sbjct: 105 GRILSSSSRDKTIKVWD---VETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKL 161
Query: 690 WYYKCSQWRFIRLDMNTCLP------HTKETSDETNKKIKVTMVAWDASDRWVITAINFN 743
W D+ T HT E V VA+ ++++ +
Sbjct: 162 W------------DLRTGKCVATLTGHTGE----------VNSVAFSPDGEKLLSSSSDG 199
Query: 744 FQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYK 803
IK+WD G + L+GH N V + P D +L S DG I +WD+ + +
Sbjct: 200 -TIKLWDLSTGKCLGTLRGHENGVNSVAFSP-DGYLLASGSEDGTIRVWDLRTGECVQ-- 255
Query: 804 WFHNIVEGQG-EGALFDGKWSPDGTT 828
G ++ WSPDG
Sbjct: 256 ------TLSGHTNSVTSLAWSPDGKR 275
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 138 bits (349), Expect = 9e-36
Identities = 71/293 (24%), Positives = 118/293 (40%), Gaps = 44/293 (15%)
Query: 462 KYSNLRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEI 521
GH V V G + +G+ D I+LW G+ + TL G + +
Sbjct: 37 DLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYV 96
Query: 522 SDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLAS 581
S +A +L++ + DKTI++W+++T ++ L GH + V F P ++AS
Sbjct: 97 SSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDG----TFVAS 152
Query: 582 TSTDGCIGFWKYKLDIDISKTV----FHEPVMFNERIRPGNAHILCSSFSPGGLFLATGS 637
+S DG I W D+ K V H + +FSP G L + S
Sbjct: 153 SSQDGTIKLW----DLRTGKCVATLTGHTGE------------VNSVAFSPDGEKLLSSS 196
Query: 638 GDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQW 697
D ++++ + LG L H + V+S+ +S SGS DGT +W
Sbjct: 197 SDGTIKLWDLST-GKCLGTLRG--HENGVNSVAFSPDGYLLASGSEDGTIRVW------- 246
Query: 698 RFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWD 750
L C+ ++ VT +AW + + + + I+IWD
Sbjct: 247 ---DLRTGECVQTLSGHTNS------VTSLAWSPDGKRLASGS-ADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|99958 cd05529, Bromo_WDR9_I_like, Bromodomain; WDR9 repeat I_like subfamily | Back alignment and domain information |
|---|
Score = 127 bits (322), Expect = 3e-34
Identities = 52/128 (40%), Positives = 78/128 (60%), Gaps = 12/128 (9%)
Query: 1358 LYHPRPDEWPQGD--------RDATCEKIITGLEEVMG---LSVAEPFLVPVDI-SQYPA 1405
LY+P EW D RD E++I+GL++++ L +AE F PVD+ + YP
Sbjct: 1 LYNPLSSEWELFDPGWEQPHIRDEERERLISGLDKLLLSLQLEIAEYFEYPVDLRAWYPD 60
Query: 1406 YAYVVEYPVDLTTLRARFQNRFYRRITSAQFDVRYLAANAEKFNEPHSNIVKYARIITDL 1465
Y V P+DL T+R+R +NR+YR + + + DVR + +NAE FNEP+S I K A+ ++D
Sbjct: 61 YWNRVPVPMDLETIRSRLENRYYRSLEALRHDVRLILSNAETFNEPNSEIAKKAKRLSDW 120
Query: 1466 LLRIIKEP 1473
LLRI+
Sbjct: 121 LLRILSSL 128
|
WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. Length = 128 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 124 bits (312), Expect = 1e-29
Identities = 94/397 (23%), Positives = 163/397 (41%), Gaps = 58/397 (14%)
Query: 448 YSGPLSRSLMISSHKYSNLRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARD 507
SG L +L+ S + GH ++ + F GE++++G+ D IKLW +
Sbjct: 37 ESGILLLALLSDSLVSLPDLSSLLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDN 96
Query: 508 G-KLLATLRGCSG----EISDIAIDNRNILLAAGTVDKTIRIWNLQTLA-PISVLVGHQG 561
G KL+ +L G +++ + D +ILLA+ ++D T+++W+L T I L GH
Sbjct: 97 GEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSE 156
Query: 562 IITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHI 621
+T + F P +G + +S DG I W + +S H + + P +
Sbjct: 157 SVTSLAFSP---DGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLL 213
Query: 622 LCS-------------------------------SFSPGGLFLATGSGDHHVRVYKMDGV 650
+ S SFSP G LA+GS D +R++ +
Sbjct: 214 IASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSS 273
Query: 651 DSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPH 710
S L L HS V S+ +S SGS DGT +W +
Sbjct: 274 SSLLRTLSG--HSSSVLSVAFSPDGKLLASGSSDGTVRLW--------------DLETGK 317
Query: 711 TKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVL 770
+ + V+ +++ +++ + + I++WD G ++ L+GH+N + V
Sbjct: 318 LLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSV- 376
Query: 771 ESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHN 807
S D RV+ S DG + +WD+ + H
Sbjct: 377 -SFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHT 412
|
Length = 466 |
| >gnl|CDD|99922 cd04369, Bromodomain, Bromodomain | Back alignment and domain information |
|---|
Score = 93.2 bits (232), Expect = 2e-22
Identities = 36/100 (36%), Positives = 57/100 (57%), Gaps = 3/100 (3%)
Query: 118 WKNECREVLETLW--VCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESP 175
K + R +L+ L SEPF +PVD + PDY +++ PMDL TI+++L+ Y+S
Sbjct: 1 LKKKLRSLLDALKKLKRDLSEPFLEPVDPKEAPDYYEVIKNPMDLSTIKKKLKNGEYKSL 60
Query: 176 IDFVKDVKRVFHNSRNYNQNKRSKIYIMTTRLSEFAEEHL 215
+F DV+ +F N++ YN S IY +L + E+ L
Sbjct: 61 EEFEADVRLIFSNAKTYNG-PGSPIYKDAKKLEKLFEKLL 99
|
Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine. Length = 99 |
| >gnl|CDD|99922 cd04369, Bromodomain, Bromodomain | Back alignment and domain information |
|---|
Score = 93.2 bits (232), Expect = 2e-22
Identities = 36/100 (36%), Positives = 57/100 (57%), Gaps = 3/100 (3%)
Query: 1533 WKNECREVLETLW--VCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESP 1590
K + R +L+ L SEPF +PVD + PDY +++ PMDL TI+++L+ Y+S
Sbjct: 1 LKKKLRSLLDALKKLKRDLSEPFLEPVDPKEAPDYYEVIKNPMDLSTIKKKLKNGEYKSL 60
Query: 1591 IDFVKDVKRVFHNSRNYNQNKRSKIYIMTTRLSEFAEEHL 1630
+F DV+ +F N++ YN S IY +L + E+ L
Sbjct: 61 EEFEADVRLIFSNAKTYNG-PGSPIYKDAKKLEKLFEKLL 99
|
Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine. Length = 99 |
| >gnl|CDD|197636 smart00297, BROMO, bromo domain | Back alignment and domain information |
|---|
Score = 93.1 bits (232), Expect = 3e-22
Identities = 41/109 (37%), Positives = 60/109 (55%), Gaps = 3/109 (2%)
Query: 110 KKLKRPFNWKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRG 169
KL++ + + VL+ L P S PF KPV + + PDY I+ PMDL TI+++L
Sbjct: 2 PKLQKKL--QELLKAVLDKLDSHPLSWPFLKPVSRKEAPDYYDIIKKPMDLKTIKKKLEN 59
Query: 170 DNYESPIDFVKDVKRVFHNSRNYNQNKRSKIYIMTTRLSEFAEEHLRRL 218
Y S +FV D +F N+R YN S++Y +L +F E+ LR L
Sbjct: 60 GKYSSVEEFVADFNLMFSNARTYNG-PDSEVYKDAKKLEKFFEKKLREL 107
|
Length = 107 |
| >gnl|CDD|197636 smart00297, BROMO, bromo domain | Back alignment and domain information |
|---|
Score = 93.1 bits (232), Expect = 3e-22
Identities = 41/109 (37%), Positives = 60/109 (55%), Gaps = 3/109 (2%)
Query: 1525 KKLKRPFNWKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRG 1584
KL++ + + VL+ L P S PF KPV + + PDY I+ PMDL TI+++L
Sbjct: 2 PKLQKKL--QELLKAVLDKLDSHPLSWPFLKPVSRKEAPDYYDIIKKPMDLKTIKKKLEN 59
Query: 1585 DNYESPIDFVKDVKRVFHNSRNYNQNKRSKIYIMTTRLSEFAEEHLRRL 1633
Y S +FV D +F N+R YN S++Y +L +F E+ LR L
Sbjct: 60 GKYSSVEEFVADFNLMFSNARTYNG-PDSEVYKDAKKLEKFFEKKLREL 107
|
Length = 107 |
| >gnl|CDD|99941 cd05509, Bromo_gcn5_like, Bromodomain; Gcn5_like subfamily | Back alignment and domain information |
|---|
Score = 89.9 bits (224), Expect = 3e-21
Identities = 34/100 (34%), Positives = 56/100 (56%), Gaps = 1/100 (1%)
Query: 119 KNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDF 178
+ ++VL++L + PF +PVDK + PDY ++ PMDL T+ E+L Y + +F
Sbjct: 3 YTQLKKVLDSLKNHKSAWPFLEPVDKEEAPDYYDVIKKPMDLSTMEEKLENGYYVTLEEF 62
Query: 179 VKDVKRVFHNSRNYNQNKRSKIYIMTTRLSEFAEEHLRRL 218
V D+K +F N R YN ++ Y +L +F + L+ L
Sbjct: 63 VADLKLIFDNCRLYNG-PDTEYYKCANKLEKFFWKKLKEL 101
|
Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. Length = 101 |
| >gnl|CDD|99941 cd05509, Bromo_gcn5_like, Bromodomain; Gcn5_like subfamily | Back alignment and domain information |
|---|
Score = 89.9 bits (224), Expect = 3e-21
Identities = 34/100 (34%), Positives = 56/100 (56%), Gaps = 1/100 (1%)
Query: 1534 KNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDF 1593
+ ++VL++L + PF +PVDK + PDY ++ PMDL T+ E+L Y + +F
Sbjct: 3 YTQLKKVLDSLKNHKSAWPFLEPVDKEEAPDYYDVIKKPMDLSTMEEKLENGYYVTLEEF 62
Query: 1594 VKDVKRVFHNSRNYNQNKRSKIYIMTTRLSEFAEEHLRRL 1633
V D+K +F N R YN ++ Y +L +F + L+ L
Sbjct: 63 VADLKLIFDNCRLYNG-PDTEYYKCANKLEKFFWKKLKEL 101
|
Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. Length = 101 |
| >gnl|CDD|99958 cd05529, Bromo_WDR9_I_like, Bromodomain; WDR9 repeat I_like subfamily | Back alignment and domain information |
|---|
Score = 82.8 bits (205), Expect = 2e-18
Identities = 27/58 (46%), Positives = 41/58 (70%)
Query: 1 LTTLRARFQNRFYRRITSAQFDVRYLAANAEKFNEPHSNIVKYARIITDLLLRIIKEP 58
L T+R+R +NR+YR + + + DVR + +NAE FNEP+S I K A+ ++D LLRI+
Sbjct: 71 LETIRSRLENRYYRSLEALRHDVRLILSNAETFNEPNSEIAKKAKRLSDWLLRILSSL 128
|
WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. Length = 128 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 90.1 bits (222), Expect = 2e-18
Identities = 61/289 (21%), Positives = 110/289 (38%), Gaps = 31/289 (10%)
Query: 567 NFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSF 626
+ +N + L+ S++ I D +S + +R I +F
Sbjct: 19 SELGPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLS-----SLLLRGHEDSITSIAF 73
Query: 627 SPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSH---SHLRFVSGSR 683
SP G L +GS D ++++ +D + + LE H V + S + + S S
Sbjct: 74 SPDGELLLSGSSDGTIKLWDLDNGEKLIKSLE-GLHDSSVSKLALSSPDGNSILLASSSL 132
Query: 684 DGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFN 743
DGT +W + T H++ VT +A+ + + + + +
Sbjct: 133 DGTVKLW-----DLSTPGKLIRTLEGHSES----------VTSLAFSPDGKLLASGSSLD 177
Query: 744 FQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYK 803
IK+WD G + L GHT+ V L P ++ S DG I +WD+ + K
Sbjct: 178 GTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTG-----K 232
Query: 804 WFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGGFKRPQNI 852
+ + G + + +SPDG+ A S G + ++ L
Sbjct: 233 LLRSTLSGHSDSVV--SSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRT 279
|
Length = 466 |
| >gnl|CDD|99927 cd05495, Bromo_cbp_like, Bromodomain, cbp_like subfamily | Back alignment and domain information |
|---|
Score = 79.8 bits (197), Expect = 1e-17
Identities = 39/85 (45%), Positives = 52/85 (61%), Gaps = 4/85 (4%)
Query: 133 PDSEPFRKPVD--KLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSR 190
P+S PFR+PVD L PDY IV PMDL TIR +L Y+ P +V DV +F N+
Sbjct: 20 PESLPFRQPVDPKLLGIPDYFDIVKNPMDLSTIRRKLDTGQYQDPWQYVDDVWLMFDNAW 79
Query: 191 NYNQNKRSKIYIMTTRLSE-FAEEH 214
YN+ K S++Y T+L+E F +E
Sbjct: 80 LYNR-KTSRVYKYCTKLAEVFEQEI 103
|
Cbp (CREB binding protein or CREBBP) is an acetyltransferase acting on histone, which gives a specific tag for transcriptional activation and also acetylates non-histone proteins. CREBBP binds specifically to phosphorylated CREB protein and augments the activity of phosphorylated CREB to activate transcription of cAMP-responsive genes. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. Length = 108 |
| >gnl|CDD|99927 cd05495, Bromo_cbp_like, Bromodomain, cbp_like subfamily | Back alignment and domain information |
|---|
Score = 79.8 bits (197), Expect = 1e-17
Identities = 39/85 (45%), Positives = 52/85 (61%), Gaps = 4/85 (4%)
Query: 1548 PDSEPFRKPVD--KLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSR 1605
P+S PFR+PVD L PDY IV PMDL TIR +L Y+ P +V DV +F N+
Sbjct: 20 PESLPFRQPVDPKLLGIPDYFDIVKNPMDLSTIRRKLDTGQYQDPWQYVDDVWLMFDNAW 79
Query: 1606 NYNQNKRSKIYIMTTRLSE-FAEEH 1629
YN+ K S++Y T+L+E F +E
Sbjct: 80 LYNR-KTSRVYKYCTKLAEVFEQEI 103
|
Cbp (CREB binding protein or CREBBP) is an acetyltransferase acting on histone, which gives a specific tag for transcriptional activation and also acetylates non-histone proteins. CREBBP binds specifically to phosphorylated CREB protein and augments the activity of phosphorylated CREB to activate transcription of cAMP-responsive genes. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. Length = 108 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 87.5 bits (215), Expect = 2e-17
Identities = 73/304 (24%), Positives = 119/304 (39%), Gaps = 39/304 (12%)
Query: 474 GHLSAVFCVLFDKLGE-VIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNIL 532
GH V + F G +I +G+ D I+LW GKLL + + + L
Sbjct: 196 GHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSL 255
Query: 533 LAAGTVDKTIRIWNLQTLA-PISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFW 591
LA+G+ D TIR+W+L++ + + L GH + V F P LAS S+DG + W
Sbjct: 256 LASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDG----KLLASGSSDGTVRLW 311
Query: 592 KYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATG-SGDHHVRVYKMDGV 650
D++ K + + +E + SFSP G L +G S D +R++ +
Sbjct: 312 ----DLETGKLLSSLTLKGHEGP------VSSLSFSPDGSLLVSGGSDDGTIRLWDLRTG 361
Query: 651 DSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPH 710
+ E V S+ +S SGS DGT +W L
Sbjct: 362 KPLKTL----EGHSNVLSVSFSPDGRVVSSGSTDGTVRLW----------------DLST 401
Query: 711 TKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVL 770
+ +VT + + + + + + N I++WD L V +V
Sbjct: 402 GSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNT-IRLWDLKT-SLKSVSFSPDGKVLAS 459
Query: 771 ESHP 774
+S
Sbjct: 460 KSSD 463
|
Length = 466 |
| >gnl|CDD|99932 cd05500, Bromo_BDF1_2_I, Bromodomain | Back alignment and domain information |
|---|
Score = 79.3 bits (196), Expect = 2e-17
Identities = 31/85 (36%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
Query: 133 PDSEPFRKPVD--KLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSR 190
D+ PF PVD KL+ P Y I+ PMDLGTI +L+ + Y S +F D + N
Sbjct: 20 KDARPFLVPVDPVKLNIPHYPTIIKKPMDLGTIERKLKSNVYTSVEEFTADFNLMVDNCL 79
Query: 191 NYNQNKRSKIYIMTTRLSEFAEEHL 215
+N + M RL E+HL
Sbjct: 80 TFN-GPEHPVSQMGKRLQAAFEKHL 103
|
BDF1/BDF2 like subfamily, restricted to fungi, repeat I. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. Length = 103 |
| >gnl|CDD|99932 cd05500, Bromo_BDF1_2_I, Bromodomain | Back alignment and domain information |
|---|
Score = 79.3 bits (196), Expect = 2e-17
Identities = 31/85 (36%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
Query: 1548 PDSEPFRKPVD--KLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSR 1605
D+ PF PVD KL+ P Y I+ PMDLGTI +L+ + Y S +F D + N
Sbjct: 20 KDARPFLVPVDPVKLNIPHYPTIIKKPMDLGTIERKLKSNVYTSVEEFTADFNLMVDNCL 79
Query: 1606 NYNQNKRSKIYIMTTRLSEFAEEHL 1630
+N + M RL E+HL
Sbjct: 80 TFN-GPEHPVSQMGKRLQAAFEKHL 103
|
BDF1/BDF2 like subfamily, restricted to fungi, repeat I. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. Length = 103 |
| >gnl|CDD|215921 pfam00439, Bromodomain, Bromodomain | Back alignment and domain information |
|---|
Score = 75.5 bits (186), Expect = 2e-16
Identities = 36/82 (43%), Positives = 54/82 (65%), Gaps = 1/82 (1%)
Query: 122 CREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKD 181
C E+LE L P +EPF +PVD ++PDY +++ PMDL TIR++L+ Y+S +F+KD
Sbjct: 1 CLEILEDLMEHPLAEPFLEPVDPEEYPDYYEVIKEPMDLSTIRQKLKSGKYKSLAEFLKD 60
Query: 182 VKRVFHNSRNYNQNKRSKIYIM 203
V+ +F N+ YN + S IY
Sbjct: 61 VELIFSNAITYNG-EDSDIYKD 81
|
Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. Length = 84 |
| >gnl|CDD|215921 pfam00439, Bromodomain, Bromodomain | Back alignment and domain information |
|---|
Score = 75.5 bits (186), Expect = 2e-16
Identities = 36/82 (43%), Positives = 54/82 (65%), Gaps = 1/82 (1%)
Query: 1537 CREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKD 1596
C E+LE L P +EPF +PVD ++PDY +++ PMDL TIR++L+ Y+S +F+KD
Sbjct: 1 CLEILEDLMEHPLAEPFLEPVDPEEYPDYYEVIKEPMDLSTIRQKLKSGKYKSLAEFLKD 60
Query: 1597 VKRVFHNSRNYNQNKRSKIYIM 1618
V+ +F N+ YN + S IY
Sbjct: 61 VELIFSNAITYNG-EDSDIYKD 81
|
Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. Length = 84 |
| >gnl|CDD|99938 cd05506, Bromo_plant1, Bromodomain, uncharacterized subfamily specific to plants | Back alignment and domain information |
|---|
Score = 73.1 bits (180), Expect = 2e-15
Identities = 32/95 (33%), Positives = 46/95 (48%), Gaps = 3/95 (3%)
Query: 121 ECREVLETLWVCPDSEPFRKPVD--KLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDF 178
+C +L L F PVD L PDY I+ PMDLGT++++L Y SP +F
Sbjct: 4 QCGTLLRKLMKHKWGWVFNAPVDVVALGLPDYFDIIKKPMDLGTVKKKLEKGEYSSPEEF 63
Query: 179 VKDVKRVFHNSRNYNQNKRSKIYIMTTRLSEFAEE 213
DV+ F N+ YN + ++ M L + E
Sbjct: 64 AADVRLTFANAMRYNP-PGNDVHTMAKELLKIFET 97
|
Might function as a global transcription factor. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. Length = 99 |
| >gnl|CDD|99938 cd05506, Bromo_plant1, Bromodomain, uncharacterized subfamily specific to plants | Back alignment and domain information |
|---|
Score = 73.1 bits (180), Expect = 2e-15
Identities = 32/95 (33%), Positives = 46/95 (48%), Gaps = 3/95 (3%)
Query: 1536 ECREVLETLWVCPDSEPFRKPVD--KLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDF 1593
+C +L L F PVD L PDY I+ PMDLGT++++L Y SP +F
Sbjct: 4 QCGTLLRKLMKHKWGWVFNAPVDVVALGLPDYFDIIKKPMDLGTVKKKLEKGEYSSPEEF 63
Query: 1594 VKDVKRVFHNSRNYNQNKRSKIYIMTTRLSEFAEE 1628
DV+ F N+ YN + ++ M L + E
Sbjct: 64 AADVRLTFANAMRYNP-PGNDVHTMAKELLKIFET 97
|
Might function as a global transcription factor. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. Length = 99 |
| >gnl|CDD|99929 cd05497, Bromo_Brdt_I_like, Bromodomain, Brdt_like subfamily, repeat I | Back alignment and domain information |
|---|
Score = 71.3 bits (175), Expect = 1e-14
Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 3/95 (3%)
Query: 123 REVLETLWVCPDSEPFRKPVD--KLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVK 180
+ VL+ LW + PF++PVD KL+ PDY KI+ PMDLGTI++ L + Y S + ++
Sbjct: 11 KVVLKALWKHKFAWPFQQPVDAVKLNLPDYHKIIKTPMDLGTIKKRLENNYYWSASECIQ 70
Query: 181 DVKRVFHNSRNYNQNKRSKIYIMTTRLSEFAEEHL 215
D +F N YN+ + +M L + + L
Sbjct: 71 DFNTMFTNCYIYNKPGD-DVVLMAQTLEKLFLQKL 104
|
Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. Length = 107 |
| >gnl|CDD|99929 cd05497, Bromo_Brdt_I_like, Bromodomain, Brdt_like subfamily, repeat I | Back alignment and domain information |
|---|
Score = 71.3 bits (175), Expect = 1e-14
Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 3/95 (3%)
Query: 1538 REVLETLWVCPDSEPFRKPVD--KLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVK 1595
+ VL+ LW + PF++PVD KL+ PDY KI+ PMDLGTI++ L + Y S + ++
Sbjct: 11 KVVLKALWKHKFAWPFQQPVDAVKLNLPDYHKIIKTPMDLGTIKKRLENNYYWSASECIQ 70
Query: 1596 DVKRVFHNSRNYNQNKRSKIYIMTTRLSEFAEEHL 1630
D +F N YN+ + +M L + + L
Sbjct: 71 DFNTMFTNCYIYNKPGD-DVVLMAQTLEKLFLQKL 104
|
Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. Length = 107 |
| >gnl|CDD|215921 pfam00439, Bromodomain, Bromodomain | Back alignment and domain information |
|---|
Score = 68.6 bits (168), Expect = 5e-14
Identities = 32/87 (36%), Positives = 52/87 (59%), Gaps = 3/87 (3%)
Query: 1375 CEKIITGLEEVMGLSVAEPFLVPVDISQYPAYAYVVEYPVDLTTLRARFQNRFYRRITSA 1434
C +I LE++M +AEPFL PVD +YP Y V++ P+DL+T+R + ++ Y+ +
Sbjct: 1 CLEI---LEDLMEHPLAEPFLEPVDPEEYPDYYEVIKEPMDLSTIRQKLKSGKYKSLAEF 57
Query: 1435 QFDVRYLAANAEKFNEPHSNIVKYARI 1461
DV + +NA +N S+I K A+
Sbjct: 58 LKDVELIFSNAITYNGEDSDIYKDAKK 84
|
Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. Length = 84 |
| >gnl|CDD|99930 cd05498, Bromo_Brdt_II_like, Bromodomain, Brdt_like subfamily, repeat II | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 1e-13
Identities = 28/80 (35%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 137 PFRKPVD--KLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQ 194
PF KPVD L DY I+ PMDL TI+++L Y +F DV+ +F N YN
Sbjct: 23 PFYKPVDPEALGLHDYHDIIKHPMDLSTIKKKLDNREYADAQEFAADVRLMFSNCYKYN- 81
Query: 195 NKRSKIYIMTTRLSEFAEEH 214
++ M +L + E+
Sbjct: 82 PPDHPVHAMARKLQDVFEDR 101
|
Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. Length = 102 |
| >gnl|CDD|99930 cd05498, Bromo_Brdt_II_like, Bromodomain, Brdt_like subfamily, repeat II | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 1e-13
Identities = 28/80 (35%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 1552 PFRKPVD--KLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQ 1609
PF KPVD L DY I+ PMDL TI+++L Y +F DV+ +F N YN
Sbjct: 23 PFYKPVDPEALGLHDYHDIIKHPMDLSTIKKKLDNREYADAQEFAADVRLMFSNCYKYN- 81
Query: 1610 NKRSKIYIMTTRLSEFAEEH 1629
++ M +L + E+
Sbjct: 82 PPDHPVHAMARKLQDVFEDR 101
|
Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. Length = 102 |
| >gnl|CDD|197636 smart00297, BROMO, bromo domain | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 2e-13
Identities = 22/82 (26%), Positives = 42/82 (51%)
Query: 1391 AEPFLVPVDISQYPAYAYVVEYPVDLTTLRARFQNRFYRRITSAQFDVRYLAANAEKFNE 1450
+ PFL PV + P Y +++ P+DL T++ + +N Y + D + +NA +N
Sbjct: 25 SWPFLKPVSRKEAPDYYDIIKKPMDLKTIKKKLENGKYSSVEEFVADFNLMFSNARTYNG 84
Query: 1451 PHSNIVKYARIITDLLLRIIKE 1472
P S + K A+ + + ++E
Sbjct: 85 PDSEVYKDAKKLEKFFEKKLRE 106
|
Length = 107 |
| >gnl|CDD|99935 cd05503, Bromo_BAZ2A_B_like, Bromodomain, BAZ2A/BAZ2B_like subfamily | Back alignment and domain information |
|---|
Score = 67.8 bits (166), Expect = 2e-13
Identities = 27/77 (35%), Positives = 43/77 (55%)
Query: 119 KNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDF 178
C +L+ + D+ PF +PV+ P Y KI+ PMD TIRE+L Y++ +F
Sbjct: 2 LALCETILDEMEAHEDAWPFLEPVNTKLVPGYRKIIKKPMDFSTIREKLESGQYKTLEEF 61
Query: 179 VKDVKRVFHNSRNYNQN 195
+DV+ VF N +N++
Sbjct: 62 AEDVRLVFDNCETFNED 78
|
Bromo adjacent to zinc finger 2A (BAZ2A) and 2B (BAZ2B) were identified as a novel human bromodomain gene by cDNA library screening. BAZ2A is also known as Tip5 (Transcription termination factor I-interacting protein 5) and hWALp3. The proteins may play roles in transcriptional regulation. Human Tip5 is part of a complex termed NoRC (nucleolar remodeling complex), which induces nucleosome sliding and may play a role in the regulation of the rDNA locus. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. Length = 97 |
| >gnl|CDD|99935 cd05503, Bromo_BAZ2A_B_like, Bromodomain, BAZ2A/BAZ2B_like subfamily | Back alignment and domain information |
|---|
Score = 67.8 bits (166), Expect = 2e-13
Identities = 27/77 (35%), Positives = 43/77 (55%)
Query: 1534 KNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDF 1593
C +L+ + D+ PF +PV+ P Y KI+ PMD TIRE+L Y++ +F
Sbjct: 2 LALCETILDEMEAHEDAWPFLEPVNTKLVPGYRKIIKKPMDFSTIREKLESGQYKTLEEF 61
Query: 1594 VKDVKRVFHNSRNYNQN 1610
+DV+ VF N +N++
Sbjct: 62 AEDVRLVFDNCETFNED 78
|
Bromo adjacent to zinc finger 2A (BAZ2A) and 2B (BAZ2B) were identified as a novel human bromodomain gene by cDNA library screening. BAZ2A is also known as Tip5 (Transcription termination factor I-interacting protein 5) and hWALp3. The proteins may play roles in transcriptional regulation. Human Tip5 is part of a complex termed NoRC (nucleolar remodeling complex), which induces nucleosome sliding and may play a role in the regulation of the rDNA locus. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. Length = 97 |
| >gnl|CDD|99943 cd05511, Bromo_TFIID, Bromodomain, TFIID-like subfamily | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 2e-13
Identities = 28/61 (45%), Positives = 40/61 (65%)
Query: 133 PDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNY 192
PDS PF PV+K PDY KI+ PMDL TIR+++ Y+S +F++D++ + NS Y
Sbjct: 16 PDSWPFHTPVNKKKVPDYYKIIKRPMDLQTIRKKISKHKYQSREEFLEDIELIVDNSVLY 75
Query: 193 N 193
N
Sbjct: 76 N 76
|
Human TAFII250 (or TAF250) is the largest subunit of TFIID, a large multi-domain complex, which initiates the assembly of the transcription machinery. TAFII250 contains two bromodomains that specifically bind to acetylated histone H4. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. Length = 112 |
| >gnl|CDD|99943 cd05511, Bromo_TFIID, Bromodomain, TFIID-like subfamily | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 2e-13
Identities = 28/61 (45%), Positives = 40/61 (65%)
Query: 1548 PDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNY 1607
PDS PF PV+K PDY KI+ PMDL TIR+++ Y+S +F++D++ + NS Y
Sbjct: 16 PDSWPFHTPVNKKKVPDYYKIIKRPMDLQTIRKKISKHKYQSREEFLEDIELIVDNSVLY 75
Query: 1608 N 1608
N
Sbjct: 76 N 76
|
Human TAFII250 (or TAF250) is the largest subunit of TFIID, a large multi-domain complex, which initiates the assembly of the transcription machinery. TAFII250 contains two bromodomains that specifically bind to acetylated histone H4. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. Length = 112 |
| >gnl|CDD|99936 cd05504, Bromo_Acf1_like, Bromodomain; Acf1_like or BAZ1A_like subfamily | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 4e-13
Identities = 36/97 (37%), Positives = 55/97 (56%), Gaps = 1/97 (1%)
Query: 122 CREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKD 181
++L + DS PF +PV K++ PDY I+ PMDLGTI+E+L Y+ +F+ D
Sbjct: 17 LEQLLVEIVKHKDSWPFLRPVSKIEVPDYYDIIKKPMDLGTIKEKLNMGEYKLAEEFLSD 76
Query: 182 VKRVFHNSRNYNQNKRSKIYIMTTRLSEFAEEHLRRL 218
++ VF N YN + + +Y TRL F + R+L
Sbjct: 77 IQLVFSNCFLYNP-EHTSVYKAGTRLQRFFIKRCRKL 112
|
Bromo adjacent to zinc finger 1A (BAZ1A) was identified as a novel human bromodomain gene by cDNA library screening. The Drosophila homologue, Acf1, is part of the CHRAC (chromatin accessibility complex) and regulates ISWI-induced nucleosome remodeling. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. Length = 115 |
| >gnl|CDD|99936 cd05504, Bromo_Acf1_like, Bromodomain; Acf1_like or BAZ1A_like subfamily | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 4e-13
Identities = 36/97 (37%), Positives = 55/97 (56%), Gaps = 1/97 (1%)
Query: 1537 CREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKD 1596
++L + DS PF +PV K++ PDY I+ PMDLGTI+E+L Y+ +F+ D
Sbjct: 17 LEQLLVEIVKHKDSWPFLRPVSKIEVPDYYDIIKKPMDLGTIKEKLNMGEYKLAEEFLSD 76
Query: 1597 VKRVFHNSRNYNQNKRSKIYIMTTRLSEFAEEHLRRL 1633
++ VF N YN + + +Y TRL F + R+L
Sbjct: 77 IQLVFSNCFLYNP-EHTSVYKAGTRLQRFFIKRCRKL 112
|
Bromo adjacent to zinc finger 1A (BAZ1A) was identified as a novel human bromodomain gene by cDNA library screening. The Drosophila homologue, Acf1, is part of the CHRAC (chromatin accessibility complex) and regulates ISWI-induced nucleosome remodeling. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. Length = 115 |
| >gnl|CDD|99937 cd05505, Bromo_WSTF_like, Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like) | Back alignment and domain information |
|---|
Score = 63.7 bits (155), Expect = 4e-12
Identities = 27/77 (35%), Positives = 43/77 (55%)
Query: 119 KNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDF 178
+C E+L + S PFR+PV + DY K++ PMDL T++ + +Y S +F
Sbjct: 2 LQKCEEILSKILKYRFSWPFREPVTADEAEDYKKVITNPMDLQTMQTKCSCGSYSSVQEF 61
Query: 179 VKDVKRVFHNSRNYNQN 195
+ D+K VF N+ Y +N
Sbjct: 62 LDDMKLVFSNAEKYYEN 78
|
The Williams-Beuren syndrome deletion transcript 9 is a putative transcriptional regulator. WSTF was found to play a role in vitamin D-mediated transcription as part of two chromatin remodeling complexes, WINAC and WICH. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. Length = 97 |
| >gnl|CDD|99937 cd05505, Bromo_WSTF_like, Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like) | Back alignment and domain information |
|---|
Score = 63.7 bits (155), Expect = 4e-12
Identities = 27/77 (35%), Positives = 43/77 (55%)
Query: 1534 KNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDF 1593
+C E+L + S PFR+PV + DY K++ PMDL T++ + +Y S +F
Sbjct: 2 LQKCEEILSKILKYRFSWPFREPVTADEAEDYKKVITNPMDLQTMQTKCSCGSYSSVQEF 61
Query: 1594 VKDVKRVFHNSRNYNQN 1610
+ D+K VF N+ Y +N
Sbjct: 62 LDDMKLVFSNAEKYYEN 78
|
The Williams-Beuren syndrome deletion transcript 9 is a putative transcriptional regulator. WSTF was found to play a role in vitamin D-mediated transcription as part of two chromatin remodeling complexes, WINAC and WICH. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. Length = 97 |
| >gnl|CDD|99922 cd04369, Bromodomain, Bromodomain | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 5e-12
Identities = 30/98 (30%), Positives = 58/98 (59%), Gaps = 5/98 (5%)
Query: 1375 CEKIITGLEEVMGLSVAEPFLVPVDISQYPAYAYVVEYPVDLTTLRARFQNRFYRRITSA 1434
++ L+++ ++EPFL PVD + P Y V++ P+DL+T++ + +N Y+ +
Sbjct: 5 LRSLLDALKKLKR-DLSEPFLEPVDPKEAPDYYEVIKNPMDLSTIKKKLKNGEYK--SLE 61
Query: 1435 QF--DVRYLAANAEKFNEPHSNIVKYARIITDLLLRII 1470
+F DVR + +NA+ +N P S I K A+ + L +++
Sbjct: 62 EFEADVRLIFSNAKTYNGPGSPIYKDAKKLEKLFEKLL 99
|
Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine. Length = 99 |
| >gnl|CDD|99942 cd05510, Bromo_SPT7_like, Bromodomain; SPT7_like subfamily | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 5e-11
Identities = 27/87 (31%), Positives = 44/87 (50%)
Query: 133 PDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNY 192
S PF V K + PDY I+ PMDLGT+ ++L+ Y+S +FV D+ ++ N Y
Sbjct: 24 EHSTPFLTKVSKREAPDYYDIIKKPMDLGTMLKKLKNLQYKSKAEFVDDLNLIWKNCLLY 83
Query: 193 NQNKRSKIYIMTTRLSEFAEEHLRRLT 219
N + + + + AE L+ +
Sbjct: 84 NSDPSHPLRRHANFMKKKAEHLLKLIP 110
|
SPT7 is a yeast protein that functions as a component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA, and SLIK. SAGA is involved in the RNA polymerase II-dependent transcriptional regulation of about 10% of all yeast genes. The SPT7 bromodomain has been shown to weakly interact with acetylated histone H3, but not H4. The human representative of this subfamily is cat eye syndrome critical region protein 2 (CECR2). Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. Length = 112 |
| >gnl|CDD|99942 cd05510, Bromo_SPT7_like, Bromodomain; SPT7_like subfamily | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 5e-11
Identities = 27/87 (31%), Positives = 44/87 (50%)
Query: 1548 PDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNY 1607
S PF V K + PDY I+ PMDLGT+ ++L+ Y+S +FV D+ ++ N Y
Sbjct: 24 EHSTPFLTKVSKREAPDYYDIIKKPMDLGTMLKKLKNLQYKSKAEFVDDLNLIWKNCLLY 83
Query: 1608 NQNKRSKIYIMTTRLSEFAEEHLRRLT 1634
N + + + + AE L+ +
Sbjct: 84 NSDPSHPLRRHANFMKKKAEHLLKLIP 110
|
SPT7 is a yeast protein that functions as a component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA, and SLIK. SAGA is involved in the RNA polymerase II-dependent transcriptional regulation of about 10% of all yeast genes. The SPT7 bromodomain has been shown to weakly interact with acetylated histone H3, but not H4. The human representative of this subfamily is cat eye syndrome critical region protein 2 (CECR2). Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. Length = 112 |
| >gnl|CDD|99931 cd05499, Bromo_BDF1_2_II, Bromodomain | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 1e-10
Identities = 35/100 (35%), Positives = 55/100 (55%), Gaps = 8/100 (8%)
Query: 122 CREVLETLWVCPD----SEPFRKPVD--KLDHPDYDKIVIAPMDLGTIREELRGDNYESP 175
C EVL+ L + P + PF PVD L+ P+Y I+ PMDLGTI ++L+ Y+S
Sbjct: 5 CEEVLKEL-MKPKHSAYNWPFLDPVDPVALNIPNYFSIIKKPMDLGTISKKLQNGQYQSA 63
Query: 176 IDFVKDVKRVFHNSRNYNQNKRSKIYIMTTRLSEFAEEHL 215
+F +DV+ +F N +N + +Y+M +L E +
Sbjct: 64 KEFERDVRLIFKNCYTFNPEG-TDVYMMGHQLEEVFNDKW 102
|
BDF1/BDF2 like subfamily, restricted to fungi, repeat II. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. Length = 102 |
| >gnl|CDD|99931 cd05499, Bromo_BDF1_2_II, Bromodomain | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 1e-10
Identities = 35/100 (35%), Positives = 55/100 (55%), Gaps = 8/100 (8%)
Query: 1537 CREVLETLWVCPD----SEPFRKPVD--KLDHPDYDKIVIAPMDLGTIREELRGDNYESP 1590
C EVL+ L + P + PF PVD L+ P+Y I+ PMDLGTI ++L+ Y+S
Sbjct: 5 CEEVLKEL-MKPKHSAYNWPFLDPVDPVALNIPNYFSIIKKPMDLGTISKKLQNGQYQSA 63
Query: 1591 IDFVKDVKRVFHNSRNYNQNKRSKIYIMTTRLSEFAEEHL 1630
+F +DV+ +F N +N + +Y+M +L E +
Sbjct: 64 KEFERDVRLIFKNCYTFNPEG-TDVYMMGHQLEEVFNDKW 102
|
BDF1/BDF2 like subfamily, restricted to fungi, repeat II. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. Length = 102 |
| >gnl|CDD|99940 cd05508, Bromo_RACK7, Bromodomain, RACK7_like subfamily | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 1e-10
Identities = 27/66 (40%), Positives = 35/66 (53%)
Query: 132 CPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRN 191
P +EPF KPVD PDY + V PMDL T+ + +R Y S F+ D K + HN+
Sbjct: 17 QPGAEPFLKPVDLEQFPDYAQYVFKPMDLSTLEKNVRKKAYGSTDAFLADAKWILHNAII 76
Query: 192 YNQNKR 197
YN
Sbjct: 77 YNGGDH 82
|
RACK7 (also called human protein kinase C-binding protein) was identified as a potential tumor suppressor genes, it shares domain architecture with BS69/ZMYND11; both have been implicated in the regulation of cellular proliferation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. Length = 99 |
| >gnl|CDD|99940 cd05508, Bromo_RACK7, Bromodomain, RACK7_like subfamily | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 1e-10
Identities = 27/66 (40%), Positives = 35/66 (53%)
Query: 1547 CPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRN 1606
P +EPF KPVD PDY + V PMDL T+ + +R Y S F+ D K + HN+
Sbjct: 17 QPGAEPFLKPVDLEQFPDYAQYVFKPMDLSTLEKNVRKKAYGSTDAFLADAKWILHNAII 76
Query: 1607 YNQNKR 1612
YN
Sbjct: 77 YNGGDH 82
|
RACK7 (also called human protein kinase C-binding protein) was identified as a potential tumor suppressor genes, it shares domain architecture with BS69/ZMYND11; both have been implicated in the regulation of cellular proliferation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. Length = 99 |
| >gnl|CDD|227408 COG5076, COG5076, Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription] | Back alignment and domain information |
|---|
Score = 64.4 bits (157), Expect = 2e-10
Identities = 33/158 (20%), Positives = 65/158 (41%), Gaps = 1/158 (0%)
Query: 75 ETSSSEEEEEEDSKSRQRRVRPTAVTRAQREAMNQKKLKRPFNWKNECREVLETLWVCPD 134
+ E S T+V + + + + L + ++ L
Sbjct: 106 FLAIESVTPESGLGSLLMAHLKTSVKKRKTPKIEDELLYADNKAIAKFKKQLFLRDGRFL 165
Query: 135 SEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQ 194
S F K ++PDY +I+ +PMDL TI+++L+ Y+S +FV D+ +F N + YN
Sbjct: 166 SSIFLGLPSKREYPDYYEIIKSPMDLLTIQKKLKNGRYKSFEEFVSDLNLMFDNCKLYNG 225
Query: 195 NKRSKIYIMTTRLSEFAEEHLRRLTVRWNSHKNKENKK 232
S +Y+ L ++ + + + K ++
Sbjct: 226 -PDSSVYVDAKELEKYFLKLIEEIPEEMLELSIKPGRE 262
|
Length = 371 |
| >gnl|CDD|227408 COG5076, COG5076, Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription] | Back alignment and domain information |
|---|
Score = 64.4 bits (157), Expect = 2e-10
Identities = 33/158 (20%), Positives = 65/158 (41%), Gaps = 1/158 (0%)
Query: 1490 ETSSSEEEEEEDSKSRQRRVRPTAVTRAQREAMNQKKLKRPFNWKNECREVLETLWVCPD 1549
+ E S T+V + + + + L + ++ L
Sbjct: 106 FLAIESVTPESGLGSLLMAHLKTSVKKRKTPKIEDELLYADNKAIAKFKKQLFLRDGRFL 165
Query: 1550 SEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQ 1609
S F K ++PDY +I+ +PMDL TI+++L+ Y+S +FV D+ +F N + YN
Sbjct: 166 SSIFLGLPSKREYPDYYEIIKSPMDLLTIQKKLKNGRYKSFEEFVSDLNLMFDNCKLYNG 225
Query: 1610 NKRSKIYIMTTRLSEFAEEHLRRLTVRWNSHKNKENKK 1647
S +Y+ L ++ + + + K ++
Sbjct: 226 -PDSSVYVDAKELEKYFLKLIEEIPEEMLELSIKPGRE 262
|
Length = 371 |
| >gnl|CDD|99934 cd05502, Bromo_tif1_like, Bromodomain; tif1_like subfamily | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 5e-10
Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 5/88 (5%)
Query: 134 DSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDN---YESPIDFVKDVKRVFHNSR 190
S PF +PV P+Y KI+ PMDL IR++L+ + Y SP +FV DV+ +F N
Sbjct: 21 LSLPFHEPV-SPSVPNYYKIIKTPMDLSLIRKKLQPKSPQHYSSPEEFVADVRLMFKNCY 79
Query: 191 NYNQNKRSKIYIMTTRLSEFAEEHLRRL 218
+N+ S++ L F EE L+ +
Sbjct: 80 KFNEED-SEVAQAGKELELFFEEQLKEI 106
|
Tif1 (transcription intermediary factor 1) is a member of the tripartite motif (TRIM) protein family, which is characterized by a particular domain architecture. It functions by recruiting coactivators and/or corepressors to modulate transcription. Vertebrate Tif1-gamma, also labeled E3 ubiquitin-protein ligase TRIM33, plays a role in the control of hematopoiesis. Its homologue in Xenopus laevis, Ectodermin, has been shown to function in germ-layer specification and control of cell growth during embryogenesis. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. Length = 109 |
| >gnl|CDD|99934 cd05502, Bromo_tif1_like, Bromodomain; tif1_like subfamily | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 5e-10
Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 5/88 (5%)
Query: 1549 DSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDN---YESPIDFVKDVKRVFHNSR 1605
S PF +PV P+Y KI+ PMDL IR++L+ + Y SP +FV DV+ +F N
Sbjct: 21 LSLPFHEPV-SPSVPNYYKIIKTPMDLSLIRKKLQPKSPQHYSSPEEFVADVRLMFKNCY 79
Query: 1606 NYNQNKRSKIYIMTTRLSEFAEEHLRRL 1633
+N+ S++ L F EE L+ +
Sbjct: 80 KFNEED-SEVAQAGKELELFFEEQLKEI 106
|
Tif1 (transcription intermediary factor 1) is a member of the tripartite motif (TRIM) protein family, which is characterized by a particular domain architecture. It functions by recruiting coactivators and/or corepressors to modulate transcription. Vertebrate Tif1-gamma, also labeled E3 ubiquitin-protein ligase TRIM33, plays a role in the control of hematopoiesis. Its homologue in Xenopus laevis, Ectodermin, has been shown to function in germ-layer specification and control of cell growth during embryogenesis. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. Length = 109 |
| >gnl|CDD|99939 cd05507, Bromo_brd8_like, Bromodomain, brd8_like subgroup | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 4e-09
Identities = 26/79 (32%), Positives = 37/79 (46%)
Query: 117 NWKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPI 176
WK V TL + F KPV + P Y +V PMDL TI++ + S
Sbjct: 3 AWKKAILLVYRTLASHRYASVFLKPVTEDIAPGYHSVVYRPMDLSTIKKNIENGTIRSTA 62
Query: 177 DFVKDVKRVFHNSRNYNQN 195
+F +DV +F N+ YN +
Sbjct: 63 EFQRDVLLMFQNAIMYNSS 81
|
In mammals, brd8 (bromodomain containing 8) interacts with the thyroid hormone receptor in a ligand-dependent fashion and enhances thyroid hormone-dependent activation from thyroid response elements. Brd8 is thought to be a nuclear receptor coactivator. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. Length = 104 |
| >gnl|CDD|99939 cd05507, Bromo_brd8_like, Bromodomain, brd8_like subgroup | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 4e-09
Identities = 26/79 (32%), Positives = 37/79 (46%)
Query: 1532 NWKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPI 1591
WK V TL + F KPV + P Y +V PMDL TI++ + S
Sbjct: 3 AWKKAILLVYRTLASHRYASVFLKPVTEDIAPGYHSVVYRPMDLSTIKKNIENGTIRSTA 62
Query: 1592 DFVKDVKRVFHNSRNYNQN 1610
+F +DV +F N+ YN +
Sbjct: 63 EFQRDVLLMFQNAIMYNSS 81
|
In mammals, brd8 (bromodomain containing 8) interacts with the thyroid hormone receptor in a ligand-dependent fashion and enhances thyroid hormone-dependent activation from thyroid response elements. Brd8 is thought to be a nuclear receptor coactivator. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. Length = 104 |
| >gnl|CDD|227408 COG5076, COG5076, Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription] | Back alignment and domain information |
|---|
Score = 60.2 bits (146), Expect = 5e-09
Identities = 55/221 (24%), Positives = 85/221 (38%), Gaps = 44/221 (19%)
Query: 1393 PFLVPVDISQYPAYAYVVEYPVDLTTLRARFQNRFYRRITSAQFDVRYLAANAEKFNEPH 1452
FL +YP Y +++ P+DL T++ + +N Y+ D+ + N + +N P
Sbjct: 168 IFLGLPSKREYPDYYEIIKSPMDLLTIQKKLKNGRYKSFEEFVSDLNLMFDNCKLYNGPD 227
Query: 1453 SNIVKYARIITDLLLRIIKEPNPVDVPVVYHELLQNYETSSSEEEEEEDSKSRQRRVRPT 1512
S++ A+ + L++I+E E+L+ EE EE +S V T
Sbjct: 228 SSVYVDAKELEKYFLKLIEEIPE--------EMLELSIKPGREEREERES------VLIT 273
Query: 1513 AVTRAQREAMNQKKLKRPFNWKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAP 1572
A A PF +PV + PDY K + P
Sbjct: 274 NSQ-AHVGAW-----------------------------PFLRPVSDEEVPDYYKDIRDP 303
Query: 1573 MDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQNKRS 1613
MDL T +LR + Y FV+D K F N YN
Sbjct: 304 MDLSTKELKLRNNYYRPEETFVRDAKLFFDNCVMYNGEVTD 344
|
Length = 371 |
| >gnl|CDD|99946 cd05515, Bromo_polybromo_V, Bromodomain, polybromo repeat V | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 9e-09
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 7/86 (8%)
Query: 122 CREVLETLWVCPD------SEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESP 175
E+ + D S F + K ++PDY ++ P+D+ IR ++ G+ Y+S
Sbjct: 5 LWELYNAVKNYTDGRGRRLSLIFMRLPSKSEYPDYYDVIKKPIDMEKIRSKIEGNQYQSL 64
Query: 176 IDFVKDVKRVFHNSRNYNQNKRSKIY 201
D V D +F N+ YN+ S+IY
Sbjct: 65 DDMVSDFVLMFDNACKYNE-PDSQIY 89
|
Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine. Length = 105 |
| >gnl|CDD|99946 cd05515, Bromo_polybromo_V, Bromodomain, polybromo repeat V | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 9e-09
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 7/86 (8%)
Query: 1537 CREVLETLWVCPD------SEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESP 1590
E+ + D S F + K ++PDY ++ P+D+ IR ++ G+ Y+S
Sbjct: 5 LWELYNAVKNYTDGRGRRLSLIFMRLPSKSEYPDYYDVIKKPIDMEKIRSKIEGNQYQSL 64
Query: 1591 IDFVKDVKRVFHNSRNYNQNKRSKIY 1616
D V D +F N+ YN+ S+IY
Sbjct: 65 DDMVSDFVLMFDNACKYNE-PDSQIY 89
|
Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine. Length = 105 |
| >gnl|CDD|99935 cd05503, Bromo_BAZ2A_B_like, Bromodomain, BAZ2A/BAZ2B_like subfamily | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 2e-08
Identities = 22/65 (33%), Positives = 36/65 (55%)
Query: 1391 AEPFLVPVDISQYPAYAYVVEYPVDLTTLRARFQNRFYRRITSAQFDVRYLAANAEKFNE 1450
A PFL PV+ P Y +++ P+D +T+R + ++ Y+ + DVR + N E FNE
Sbjct: 18 AWPFLEPVNTKLVPGYRKIIKKPMDFSTIREKLESGQYKTLEEFAEDVRLVFDNCETFNE 77
Query: 1451 PHSNI 1455
S +
Sbjct: 78 DDSEV 82
|
Bromo adjacent to zinc finger 2A (BAZ2A) and 2B (BAZ2B) were identified as a novel human bromodomain gene by cDNA library screening. BAZ2A is also known as Tip5 (Transcription termination factor I-interacting protein 5) and hWALp3. The proteins may play roles in transcriptional regulation. Human Tip5 is part of a complex termed NoRC (nucleolar remodeling complex), which induces nucleosome sliding and may play a role in the regulation of the rDNA locus. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. Length = 97 |
| >gnl|CDD|99948 cd05517, Bromo_polybromo_II, Bromodomain, polybromo repeat II | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 3e-08
Identities = 23/61 (37%), Positives = 35/61 (57%)
Query: 1402 QYPAYAYVVEYPVDLTTLRARFQNRFYRRITSAQFDVRYLAANAEKFNEPHSNIVKYARI 1461
YP Y V++ P+DL T+ R Q+ +Y+ I + D+ + NA+ FNEP S + K A
Sbjct: 35 LYPDYYAVIKEPIDLKTIAQRIQSGYYKSIEDMEKDLDLMVKNAKTFNEPGSQVYKDANA 94
Query: 1462 I 1462
I
Sbjct: 95 I 95
|
Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine. Length = 103 |
| >gnl|CDD|99941 cd05509, Bromo_gcn5_like, Bromodomain; Gcn5_like subfamily | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 6e-08
Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Query: 1393 PFLVPVDISQYPAYAYVVEYPVDLTTLRARFQNRFYRRITSAQF--DVRYLAANAEKFNE 1450
PFL PVD + P Y V++ P+DL+T+ + +N +Y +T +F D++ + N +N
Sbjct: 21 PFLEPVDKEEAPDYYDVIKKPMDLSTMEEKLENGYY--VTLEEFVADLKLIFDNCRLYNG 78
Query: 1451 PHSNIVKYARIITDLLLRIIKE 1472
P + K A + + +KE
Sbjct: 79 PDTEYYKCANKLEKFFWKKLKE 100
|
Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. Length = 101 |
| >gnl|CDD|99949 cd05518, Bromo_polybromo_IV, Bromodomain, polybromo repeat IV | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 1e-07
Identities = 26/62 (41%), Positives = 41/62 (66%), Gaps = 2/62 (3%)
Query: 140 KPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQNKRSK 199
KP K D+PDY KI++ P+DL TI +R D Y + + + D K +F N+R+YN+ + S+
Sbjct: 30 KPSKK-DYPDYYKIILEPIDLKTIEHNIRNDKYATEEELMDDFKLMFRNARHYNE-EGSQ 87
Query: 200 IY 201
+Y
Sbjct: 88 VY 89
|
Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine. Length = 103 |
| >gnl|CDD|99949 cd05518, Bromo_polybromo_IV, Bromodomain, polybromo repeat IV | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 1e-07
Identities = 26/62 (41%), Positives = 41/62 (66%), Gaps = 2/62 (3%)
Query: 1555 KPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQNKRSK 1614
KP K D+PDY KI++ P+DL TI +R D Y + + + D K +F N+R+YN+ + S+
Sbjct: 30 KPSKK-DYPDYYKIILEPIDLKTIEHNIRNDKYATEEELMDDFKLMFRNARHYNE-EGSQ 87
Query: 1615 IY 1616
+Y
Sbjct: 88 VY 89
|
Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine. Length = 103 |
| >gnl|CDD|99946 cd05515, Bromo_polybromo_V, Bromodomain, polybromo repeat V | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 4e-07
Identities = 22/68 (32%), Positives = 37/68 (54%)
Query: 1401 SQYPAYAYVVEYPVDLTTLRARFQNRFYRRITSAQFDVRYLAANAEKFNEPHSNIVKYAR 1460
S+YP Y V++ P+D+ +R++ + Y+ + D + NA K+NEP S I K A
Sbjct: 34 SEYPDYYDVIKKPIDMEKIRSKIEGNQYQSLDDMVSDFVLMFDNACKYNEPDSQIYKDAL 93
Query: 1461 IITDLLLR 1468
+ +LL
Sbjct: 94 TLQKVLLE 101
|
Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine. Length = 105 |
| >gnl|CDD|99931 cd05499, Bromo_BDF1_2_II, Bromodomain | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 8e-07
Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 3/87 (3%)
Query: 1374 TCEKIITGLEEVMGLSVAEPFLVPVD--ISQYPAYAYVVEYPVDLTTLRARFQNRFYRRI 1431
CE+++ L + + PFL PVD P Y +++ P+DL T+ + QN Y+
Sbjct: 4 FCEEVLKELMKPKHSAYNWPFLDPVDPVALNIPNYFSIIKKPMDLGTISKKLQNGQYQSA 63
Query: 1432 TSAQFDVRYLAANAEKFNEPHSNIVKY 1458
+ DVR + N FN P V
Sbjct: 64 KEFERDVRLIFKNCYTFN-PEGTDVYM 89
|
BDF1/BDF2 like subfamily, restricted to fungi, repeat II. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. Length = 102 |
| >gnl|CDD|99957 cd05528, Bromo_AAA, Bromodomain; sub-family co-occurring with AAA domains | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 2e-06
Identities = 24/57 (42%), Positives = 35/57 (61%)
Query: 137 PFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYN 193
F KPVD+ + PDY +I+ PMDL TI ++L Y + DF+KD+ + N+ YN
Sbjct: 23 AFTKPVDEEEVPDYYEIIKQPMDLQTILQKLDTHQYLTAKDFLKDIDLIVTNALEYN 79
|
Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. The structure(2DKW) in this alignment is an uncharacterized protein predicted from analysis of cDNA clones from human fetal liver. Length = 112 |
| >gnl|CDD|99957 cd05528, Bromo_AAA, Bromodomain; sub-family co-occurring with AAA domains | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 2e-06
Identities = 24/57 (42%), Positives = 35/57 (61%)
Query: 1552 PFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYN 1608
F KPVD+ + PDY +I+ PMDL TI ++L Y + DF+KD+ + N+ YN
Sbjct: 23 AFTKPVDEEEVPDYYEIIKQPMDLQTILQKLDTHQYLTAKDFLKDIDLIVTNALEYN 79
|
Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. The structure(2DKW) in this alignment is an uncharacterized protein predicted from analysis of cDNA clones from human fetal liver. Length = 112 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 2e-06
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 753 NGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWD 793
+G+L++ LKGHT V + P D + L S DG I +WD
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSP-DGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|99930 cd05498, Bromo_Brdt_II_like, Bromodomain, Brdt_like subfamily, repeat II | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 3e-06
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 6/90 (6%)
Query: 1375 CEKIITGLEEVMGLSVAEPFLVPVDISQ--YPAYAYVVEYPVDLTTLRARFQNRFYRRIT 1432
C I+ L + A PF PVD Y ++++P+DL+T++ + NR Y
Sbjct: 5 CSGILKELFSKKHKAYAWPFYKPVDPEALGLHDYHDIIKHPMDLSTIKKKLDNREYA--D 62
Query: 1433 SAQF--DVRYLAANAEKFNEPHSNIVKYAR 1460
+ +F DVR + +N K+N P + AR
Sbjct: 63 AQEFAADVRLMFSNCYKYNPPDHPVHAMAR 92
|
Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. Length = 102 |
| >gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 3e-06
Identities = 46/358 (12%), Positives = 103/358 (28%), Gaps = 59/358 (16%)
Query: 1578 IREELRGDNYESPIDFVKDVKRVFHNSRNYNQNKRSKIYIMTTRLSEFAEEHLRRLTVRW 1637
I E E +D + + +Y+ Y+++ + +E + +L
Sbjct: 1059 ITAEEEEGAEEDDEADDEDDEEELGAAVSYD-------YLLSMPIWSLTKEKVEKLN--- 1108
Query: 1638 NSHKNKEN--------------KKDSKRGEKKIKRMKRRRRKIRRT---LVESDDEVLSR 1680
+ KE +D + E+ ++ + K L S+
Sbjct: 1109 AELEKKEKELEKLKNTTPKDMWLEDLDKFEEALEEQEEVEEKEIAKEQRLKSKTKGKASK 1168
Query: 1681 KRRGKSTYENDFDFNPAGETKTKAESGNEQVEEVKTRVRRRSSNRSRSNSQDNEENDEED 1740
R+ K + + K K+ + + V +R S+ R +
Sbjct: 1169 LRKPKLKKKE--------KKKKKSSADKSKKASVVGNSKRVDSDEKRKLDDKPDNKKSNS 1220
Query: 1741 VDIDNFDPEQPGPSTSYAEPVASTSRGRFAGRAAKRKFKEESASESQEDENSIPETDTTE 1800
D D E+ + S+ + + + +E +S+ E
Sbjct: 1221 SGSDQEDDEEQKTKPKKSSVKRLKSKKNNS--SKSSEDNDEFSSDDLSKEGKPKNAPKRV 1278
Query: 1801 QPAKKLKVLYPKRRGQQSEDGSGDNASEMSELKQDPLSLHDENEDEDNTNEMGKRKRTTR 1860
+ P +R +G +S + +
Sbjct: 1279 SAVQYSP-PPPSKRPDGESNGGSKPSSPTKKKVKKR-----------------LEGSLAA 1320
Query: 1861 LVKSNEPEDEEDDDDESDEDYSPSTHA----VTKRKRSVRVEKSNEVDEDEESDEDYK 1914
L K + E + +S ++ + + +R R + + S+E D+D E D+
Sbjct: 1321 LKKKKKSEKKTARKKKSKTRVKQASASQSSRLLRRPRKKKSDSSSEDDDDSEVDDSED 1378
|
Length = 1388 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 4e-06
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 754 GDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWD 793
G L++ LKGHT V + P D +L S DG + +WD
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSP-DGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|99943 cd05511, Bromo_TFIID, Bromodomain, TFIID-like subfamily | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 8e-06
Identities = 23/97 (23%), Positives = 47/97 (48%), Gaps = 3/97 (3%)
Query: 1376 EKIITGLEEVMGLSVAEPFLVPVDISQYPAYAYVVEYPVDLTTLRARFQNRFYRRITSAQ 1435
++I+ L+ + + PF PV+ + P Y +++ P+DL T+R + Y+
Sbjct: 6 DEIVNELKNLPD---SWPFHTPVNKKKVPDYYKIIKRPMDLQTIRKKISKHKYQSREEFL 62
Query: 1436 FDVRYLAANAEKFNEPHSNIVKYARIITDLLLRIIKE 1472
D+ + N+ +N P S K A+ + +L ++ E
Sbjct: 63 EDIELIVDNSVLYNGPDSVYTKKAKEMLELAEELLAE 99
|
Human TAFII250 (or TAF250) is the largest subunit of TFIID, a large multi-domain complex, which initiates the assembly of the transcription machinery. TAFII250 contains two bromodomains that specifically bind to acetylated histone H4. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. Length = 112 |
| >gnl|CDD|99939 cd05507, Bromo_brd8_like, Bromodomain, brd8_like subgroup | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 8e-06
Identities = 23/80 (28%), Positives = 35/80 (43%)
Query: 1391 AEPFLVPVDISQYPAYAYVVEYPVDLTTLRARFQNRFYRRITSAQFDVRYLAANAEKFNE 1450
A FL PV P Y VV P+DL+T++ +N R Q DV + NA +N
Sbjct: 21 ASVFLKPVTEDIAPGYHSVVYRPMDLSTIKKNIENGTIRSTAEFQRDVLLMFQNAIMYNS 80
Query: 1451 PHSNIVKYARIITDLLLRII 1470
++ A + ++ I
Sbjct: 81 SDHDVYLMAVEMQREVMSQI 100
|
In mammals, brd8 (bromodomain containing 8) interacts with the thyroid hormone receptor in a ligand-dependent fashion and enhances thyroid hormone-dependent activation from thyroid response elements. Brd8 is thought to be a nuclear receptor coactivator. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. Length = 104 |
| >gnl|CDD|99936 cd05504, Bromo_Acf1_like, Bromodomain; Acf1_like or BAZ1A_like subfamily | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 9e-06
Identities = 23/93 (24%), Positives = 45/93 (48%), Gaps = 7/93 (7%)
Query: 1382 LEEVMGLSVAEPFLVPVDISQYPAYAYVVEYPVDLTTLRARFQNRFYRRITSAQF--DVR 1439
L E++ + PFL PV + P Y +++ P+DL T++ + Y+ + +F D++
Sbjct: 21 LVEIVKHKDSWPFLRPVSKIEVPDYYDIIKKPMDLGTIKEKLNMGEYK--LAEEFLSDIQ 78
Query: 1440 YLAANAEKFNEPHSNIVKYARIITDLLLRIIKE 1472
+ +N +N H+++ K L IK
Sbjct: 79 LVFSNCFLYNPEHTSVYKAGT---RLQRFFIKR 108
|
Bromo adjacent to zinc finger 1A (BAZ1A) was identified as a novel human bromodomain gene by cDNA library screening. The Drosophila homologue, Acf1, is part of the CHRAC (chromatin accessibility complex) and regulates ISWI-induced nucleosome remodeling. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. Length = 115 |
| >gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 9e-06
Identities = 44/277 (15%), Positives = 89/277 (32%), Gaps = 47/277 (16%)
Query: 1641 KNKENKKDSKRGEK-KIKRMKRRRRKIRRTLVESDDEVLSRKRRGKSTYENDFDF----N 1695
KE + SK K R + ++K ++ S D+ G S + + +
Sbjct: 1152 IAKEQRLKSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGNSKRVDSDEKRKLDD 1211
Query: 1696 PAGETKTKAESGNEQVEEVKTRVRRRSSNRSRSNSQDNEENDEEDVDIDNFDPEQPGPST 1755
K+ + +++ +E + ++SS + + ++N ED D + D
Sbjct: 1212 KPDNKKSNSSGSDQEDDEEQKTKPKKSSVKRLKSKKNNSSKSSEDNDEFSSDDLSKEGKP 1271
Query: 1756 SYAEPVASTSRGRFAGRAAKRKFKEESASESQEDENSIPETDTTEQPAKKLKVLYPKRRG 1815
A S + + + + S P + T ++ K+L+
Sbjct: 1272 KNAPKRVSAVQ--------YSPPPPSKRPDGESNGGSKPSSPTKKKVKKRLE---GSLAA 1320
Query: 1816 QQSEDGSGDNASEMSELKQDPLSLHDENEDEDNTNEMGKRKRTTRLVKSNEPEDEEDDDD 1875
+ + S + + K + R R + + + +DDD
Sbjct: 1321 LKKKKKSEKKTARKKKSKTRVKQASAS-----------QSSRLLRRPRKKKSDSSSEDDD 1369
Query: 1876 ESDEDYSPSTHAVTKRKRSVRVEKSNEVDEDEESDED 1912
+S+ D S DED+E DED
Sbjct: 1370 DSEVDDS--------------------EDEDDEDDED 1386
|
Length = 1388 |
| >gnl|CDD|99952 cd05521, Bromo_Rsc1_2_I, Bromodomain, repeat I in Rsc1/2_like subfamily, specific to fungi | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 9e-06
Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 13/94 (13%)
Query: 109 QKKLKRPFNWKNEC-REVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREEL 167
+ + K E E+ V P + D+PDY KI+ P+ L T+++ L
Sbjct: 7 KPLYDGIYTLKEENGIEIHPIFNVLPL---------RKDYPDYYKIIKNPLSLNTVKKRL 57
Query: 168 RGDNYESPIDFVKDVKRVFHNSRNYNQNKRSKIY 201
+Y + +FV D+ ++ N+R YN K S IY
Sbjct: 58 P--HYTNAQEFVNDLAQIPWNARLYN-TKGSVIY 88
|
Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. Length = 106 |
| >gnl|CDD|99952 cd05521, Bromo_Rsc1_2_I, Bromodomain, repeat I in Rsc1/2_like subfamily, specific to fungi | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 9e-06
Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 13/94 (13%)
Query: 1524 QKKLKRPFNWKNEC-REVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREEL 1582
+ + K E E+ V P + D+PDY KI+ P+ L T+++ L
Sbjct: 7 KPLYDGIYTLKEENGIEIHPIFNVLPL---------RKDYPDYYKIIKNPLSLNTVKKRL 57
Query: 1583 RGDNYESPIDFVKDVKRVFHNSRNYNQNKRSKIY 1616
+Y + +FV D+ ++ N+R YN K S IY
Sbjct: 58 P--HYTNAQEFVNDLAQIPWNARLYN-TKGSVIY 88
|
Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. Length = 106 |
| >gnl|CDD|99944 cd05512, Bromo_brd1_like, Bromodomain; brd1_like subfamily | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 1e-05
Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 123 REVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDV 182
R+ L+ L +E F +PVD + PDY + PMD T+R++L Y + DF D
Sbjct: 7 RKTLDQLQEKDTAEIFSEPVDLSEVPDYLDHIKQPMDFSTMRKKLESQRYRTLEDFEADF 66
Query: 183 KRVFHNSRNYNQNKRSKIYIMTTRLSE 209
+ +N YN K + Y RL +
Sbjct: 67 NLIINNCLAYN-AKDTIFYRAAVRLRD 92
|
BRD1 is a mammalian gene which encodes for a nuclear protein assumed to be a transcriptional regulator. BRD1 has been implicated with brain development and susceptibility to schizophrenia and bipolar affective disorder. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. Length = 98 |
| >gnl|CDD|99944 cd05512, Bromo_brd1_like, Bromodomain; brd1_like subfamily | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 1e-05
Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 1538 REVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDV 1597
R+ L+ L +E F +PVD + PDY + PMD T+R++L Y + DF D
Sbjct: 7 RKTLDQLQEKDTAEIFSEPVDLSEVPDYLDHIKQPMDFSTMRKKLESQRYRTLEDFEADF 66
Query: 1598 KRVFHNSRNYNQNKRSKIYIMTTRLSE 1624
+ +N YN K + Y RL +
Sbjct: 67 NLIINNCLAYN-AKDTIFYRAAVRLRD 92
|
BRD1 is a mammalian gene which encodes for a nuclear protein assumed to be a transcriptional regulator. BRD1 has been implicated with brain development and susceptibility to schizophrenia and bipolar affective disorder. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. Length = 98 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.9 bits (115), Expect = 2e-05
Identities = 26/92 (28%), Positives = 41/92 (44%)
Query: 465 NLRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDI 524
+ L S V V F G V+ +G+ D ++LW G LL L G + ++ +
Sbjct: 359 RTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSL 418
Query: 525 AIDNRNILLAAGTVDKTIRIWNLQTLAPISVL 556
LA+G+ D TIR+W+L+T
Sbjct: 419 DFSPDGKSLASGSSDNTIRLWDLKTSLKSVSF 450
|
Length = 466 |
| >gnl|CDD|99944 cd05512, Bromo_brd1_like, Bromodomain; brd1_like subfamily | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 2e-05
Identities = 19/68 (27%), Positives = 37/68 (54%)
Query: 1382 LEEVMGLSVAEPFLVPVDISQYPAYAYVVEYPVDLTTLRARFQNRFYRRITSAQFDVRYL 1441
L+++ AE F PVD+S+ P Y ++ P+D +T+R + +++ YR + + D +
Sbjct: 10 LDQLQEKDTAEIFSEPVDLSEVPDYLDHIKQPMDFSTMRKKLESQRYRTLEDFEADFNLI 69
Query: 1442 AANAEKFN 1449
N +N
Sbjct: 70 INNCLAYN 77
|
BRD1 is a mammalian gene which encodes for a nuclear protein assumed to be a transcriptional regulator. BRD1 has been implicated with brain development and susceptibility to schizophrenia and bipolar affective disorder. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. Length = 98 |
| >gnl|CDD|99947 cd05516, Bromo_SNF2L2, Bromodomain, SNF2L2-like subfamily, specific to animals | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 2e-05
Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 135 SEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQ 194
+E F + + + P+Y +++ P+D I+E +R Y S D KDV + N++ +N
Sbjct: 25 AEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLEDLEKDVMLLCQNAQTFNL 84
Query: 195 NKRSKIY 201
+ S IY
Sbjct: 85 -EGSLIY 90
|
SNF2L2 (SNF2-alpha) or SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 is a global transcriptional activator, which cooperates with nuclear hormone receptors to boost transcriptional activation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. Length = 107 |
| >gnl|CDD|99947 cd05516, Bromo_SNF2L2, Bromodomain, SNF2L2-like subfamily, specific to animals | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 2e-05
Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 1550 SEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQ 1609
+E F + + + P+Y +++ P+D I+E +R Y S D KDV + N++ +N
Sbjct: 25 AEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLEDLEKDVMLLCQNAQTFNL 84
Query: 1610 NKRSKIY 1616
+ S IY
Sbjct: 85 -EGSLIY 90
|
SNF2L2 (SNF2-alpha) or SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 is a global transcriptional activator, which cooperates with nuclear hormone receptors to boost transcriptional activation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. Length = 107 |
| >gnl|CDD|99938 cd05506, Bromo_plant1, Bromodomain, uncharacterized subfamily specific to plants | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 3e-05
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 1393 PFLVPVDISQY--PAYAYVVEYPVDLTTLRARFQNRFYRRITSAQFDVRYLAANAEKFNE 1450
F PVD+ P Y +++ P+DL T++ + + Y DVR ANA ++N
Sbjct: 20 VFNAPVDVVALGLPDYFDIIKKPMDLGTVKKKLEKGEYSSPEEFAADVRLTFANAMRYNP 79
Query: 1451 P 1451
P
Sbjct: 80 P 80
|
Might function as a global transcription factor. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. Length = 99 |
| >gnl|CDD|99937 cd05505, Bromo_WSTF_like, Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like) | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 3e-05
Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
Query: 1375 CEKIITGLEEVMGLSVAEPFLVPVDISQYPAYAYVVEYPVDLTTLRARFQNRFYRRITSA 1434
CE+I L +++ + PF PV + Y V+ P+DL T++ + Y +
Sbjct: 5 CEEI---LSKILKYRFSWPFREPVTADEAEDYKKVITNPMDLQTMQTKCSCGSYSSVQEF 61
Query: 1435 QFDVRYLAANAEKFNEPHSNIV 1456
D++ + +NAEK+ E S ++
Sbjct: 62 LDDMKLVFSNAEKYYENGSYVL 83
|
The Williams-Beuren syndrome deletion transcript 9 is a putative transcriptional regulator. WSTF was found to play a role in vitamin D-mediated transcription as part of two chromatin remodeling complexes, WINAC and WICH. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. Length = 97 |
| >gnl|CDD|99940 cd05508, Bromo_RACK7, Bromodomain, RACK7_like subfamily | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 3e-05
Identities = 23/59 (38%), Positives = 34/59 (57%)
Query: 1391 AEPFLVPVDISQYPAYAYVVEYPVDLTTLRARFQNRFYRRITSAQFDVRYLAANAEKFN 1449
AEPFL PVD+ Q+P YA V P+DL+TL + + Y + D +++ NA +N
Sbjct: 20 AEPFLKPVDLEQFPDYAQYVFKPMDLSTLEKNVRKKAYGSTDAFLADAKWILHNAIIYN 78
|
RACK7 (also called human protein kinase C-binding protein) was identified as a potential tumor suppressor genes, it shares domain architecture with BS69/ZMYND11; both have been implicated in the regulation of cellular proliferation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. Length = 99 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 3e-05
Identities = 15/40 (37%), Positives = 26/40 (65%)
Query: 507 DGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWN 546
G+LL TL+G +G ++ +A LA+G+ D TI++W+
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 3e-05
Identities = 17/39 (43%), Positives = 27/39 (69%)
Query: 508 GKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWN 546
GKLL TL+G +G ++ +A LLA+G+ D T+R+W+
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 5e-05
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 656 ILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIW 690
+ ++ H+ V S+ +S SGS DGT +W
Sbjct: 4 LRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38
|
Length = 39 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 9e-05
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 656 ILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIW 690
+ ++ H+ V S+ +S SGS DGT +W
Sbjct: 5 LKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLW 39
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|99958 cd05529, Bromo_WDR9_I_like, Bromodomain; WDR9 repeat I_like subfamily | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 1e-04
Identities = 28/78 (35%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Query: 133 PDSEPFRKPVD-KLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRN 191
+E F PVD + +PDY V PMDL TIR L Y S DV+ + N+
Sbjct: 43 EIAEYFEYPVDLRAWYPDYWNRVPVPMDLETIRSRLENRYYRSLEALRHDVRLILSNAET 102
Query: 192 YNQNKRSKIYIMTTRLSE 209
+N S+I RLS+
Sbjct: 103 FN-EPNSEIAKKAKRLSD 119
|
WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. Length = 128 |
| >gnl|CDD|99958 cd05529, Bromo_WDR9_I_like, Bromodomain; WDR9 repeat I_like subfamily | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 1e-04
Identities = 28/78 (35%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Query: 1548 PDSEPFRKPVD-KLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRN 1606
+E F PVD + +PDY V PMDL TIR L Y S DV+ + N+
Sbjct: 43 EIAEYFEYPVDLRAWYPDYWNRVPVPMDLETIRSRLENRYYRSLEALRHDVRLILSNAET 102
Query: 1607 YNQNKRSKIYIMTTRLSE 1624
+N S+I RLS+
Sbjct: 103 FN-EPNSEIAKKAKRLSD 119
|
WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. Length = 128 |
| >gnl|CDD|99950 cd05519, Bromo_SNF2, Bromodomain, SNF2-like subfamily, specific to fungi | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 1e-04
Identities = 19/80 (23%), Positives = 35/80 (43%)
Query: 1374 TCEKIITGLEEVMGLSVAEPFLVPVDISQYPAYAYVVEYPVDLTTLRARFQNRFYRRITS 1433
+ E+ G ++E FL YP Y +++ P+ L ++ R + R Y+ +
Sbjct: 7 EIYDAVLNCEDETGRKLSELFLEKPSKKLYPDYYVIIKRPIALDQIKRRIEGRAYKSLEE 66
Query: 1434 AQFDVRYLAANAEKFNEPHS 1453
D + ANA +N+ S
Sbjct: 67 FLEDFHLMFANARTYNQEGS 86
|
SNF2 is a yeast protein involved in transcriptional activation, it is the catalytic component of the SWI/SNF ATP-dependent chromatin remodeling complex. The protein is essential for the regulation of gene expression (both positive and negative) of a large number of genes. The SWI/SNF complex changes chromatin structure by altering DNA-histone contacts within the nucleosome, which results in a re-positioning of the nucleosome and facilitates or represses the binding of gene-specific transcription factors. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. Length = 103 |
| >gnl|CDD|99950 cd05519, Bromo_SNF2, Bromodomain, SNF2-like subfamily, specific to fungi | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 1e-04
Identities = 22/60 (36%), Positives = 34/60 (56%)
Query: 135 SEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQ 194
SE F + K +PDY I+ P+ L I+ + G Y+S +F++D +F N+R YNQ
Sbjct: 24 SELFLEKPSKKLYPDYYVIIKRPIALDQIKRRIEGRAYKSLEEFLEDFHLMFANARTYNQ 83
|
SNF2 is a yeast protein involved in transcriptional activation, it is the catalytic component of the SWI/SNF ATP-dependent chromatin remodeling complex. The protein is essential for the regulation of gene expression (both positive and negative) of a large number of genes. The SWI/SNF complex changes chromatin structure by altering DNA-histone contacts within the nucleosome, which results in a re-positioning of the nucleosome and facilitates or represses the binding of gene-specific transcription factors. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. Length = 103 |
| >gnl|CDD|99950 cd05519, Bromo_SNF2, Bromodomain, SNF2-like subfamily, specific to fungi | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 1e-04
Identities = 22/60 (36%), Positives = 34/60 (56%)
Query: 1550 SEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQ 1609
SE F + K +PDY I+ P+ L I+ + G Y+S +F++D +F N+R YNQ
Sbjct: 24 SELFLEKPSKKLYPDYYVIIKRPIALDQIKRRIEGRAYKSLEEFLEDFHLMFANARTYNQ 83
|
SNF2 is a yeast protein involved in transcriptional activation, it is the catalytic component of the SWI/SNF ATP-dependent chromatin remodeling complex. The protein is essential for the regulation of gene expression (both positive and negative) of a large number of genes. The SWI/SNF complex changes chromatin structure by altering DNA-histone contacts within the nucleosome, which results in a re-positioning of the nucleosome and facilitates or represses the binding of gene-specific transcription factors. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. Length = 103 |
| >gnl|CDD|99932 cd05500, Bromo_BDF1_2_I, Bromodomain | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 2e-04
Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 8/71 (11%)
Query: 1388 LSVAEPFLVPVD-----ISQYPAYAYVVEYPVDLTTLRARFQNRFYRRITSAQFDVRYLA 1442
L A PFLVPVD I YP ++ P+DL T+ + ++ Y + D +
Sbjct: 19 LKDARPFLVPVDPVKLNIPHYPTI---IKKPMDLGTIERKLKSNVYTSVEEFTADFNLMV 75
Query: 1443 ANAEKFNEPHS 1453
N FN P
Sbjct: 76 DNCLTFNGPEH 86
|
BDF1/BDF2 like subfamily, restricted to fungi, repeat I. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. Length = 103 |
| >gnl|CDD|215641 PLN03237, PLN03237, DNA topoisomerase 2; Provisional | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 2e-04
Identities = 50/304 (16%), Positives = 99/304 (32%), Gaps = 84/304 (27%)
Query: 1643 KENKKDSKRGE----KKIKRMKRRRRKIRRTLVESDDEVLSRKRRGKSTYENDFDFNPAG 1698
++ ++ + RGE KK+ R ++ ++T ++ + + + G S E +
Sbjct: 1180 EKLQRAAARGESGAAKKVSRQAPKKPAPKKTTKKASESETTEETYGSSAMETENVA---- 1235
Query: 1699 ETKTKAESGNEQVEEVKTRVRRRSSNRSRSNSQDNEENDE-----EDVDIDNFDPEQPGP 1753
E VK + R + ++ + +++ EE DE + + N D P
Sbjct: 1236 -------------EVVKPKGRAGAKKKAPAAAKEKEEEDEILDLKDRLAAYNLD-SAPAQ 1281
Query: 1754 STSYAEPVASTSRGRFAGRAAKRKFKEESASESQEDENSIPETDTTEQPAKK-------- 1805
S E V + R A R + +D++ E E+ KK
Sbjct: 1282 SAKMEETVKAVPARRAAARKKPLASVSVISDSDDDDDDFAVEVSLAERLKKKGGRKPAAA 1341
Query: 1806 -----LKVLYPKRRGQQSEDGSGDNASEMSELKQD-----------------------PL 1837
K+RG + +EM + + L
Sbjct: 1342 NKKAAKPPAAAKKRGPATVQSGQKLLTEMLKPAEAIGISPEKKVRKMRASPFNKKSGSVL 1401
Query: 1838 SLHDENEDEDNTNEM---------------------GKRKRTTRLVKSNEPEDEEDDDDE 1876
N++ +++ + RK+TT ++ +E E +D D +
Sbjct: 1402 GRAATNKETESSENVSGSSSSEKDEIDVSAKPRPQRANRKQTTYVLSDSESESADDSDFD 1461
Query: 1877 SDED 1880
DED
Sbjct: 1462 DDED 1465
|
Length = 1465 |
| >gnl|CDD|99927 cd05495, Bromo_cbp_like, Bromodomain, cbp_like subfamily | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 3e-04
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Query: 1391 AEPFLVPVD--ISQYPAYAYVVEYPVDLTTLRARFQNRFYRRITSAQFDVRYLAANAEKF 1448
+ PF PVD + P Y +V+ P+DL+T+R + Y+ DV + NA +
Sbjct: 22 SLPFRQPVDPKLLGIPDYFDIVKNPMDLSTIRRKLDTGQYQDPWQYVDDVWLMFDNAWLY 81
Query: 1449 NEPHSNIVKYARIITDLLLRII 1470
N S + KY + ++ + I
Sbjct: 82 NRKTSRVYKYCTKLAEVFEQEI 103
|
Cbp (CREB binding protein or CREBBP) is an acetyltransferase acting on histone, which gives a specific tag for transcriptional activation and also acetylates non-histone proteins. CREBBP binds specifically to phosphorylated CREB protein and augments the activity of phosphorylated CREB to activate transcription of cAMP-responsive genes. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. Length = 108 |
| >gnl|CDD|220135 pfam09184, PPP4R2, PPP4R2 | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 3e-04
Identities = 29/161 (18%), Positives = 62/161 (38%), Gaps = 14/161 (8%)
Query: 1720 RRSSNRSRSNSQDNEENDEEDVDIDNFDPEQPGPSTSYAEPVASTSRGRFAGRAAKRKFK 1779
S+ NS D N I+ + + P + + E + S + K
Sbjct: 138 GERSDSENGNSLDGVMNGVSLSKIEWLNEDFPSELSPFIERIDSVNGPGEPEPEDDPKDS 197
Query: 1780 EESASESQEDENSIPETDTTEQPAKKLKVLYPKRRGQQSEDGSGDNASEMSELKQDPLSL 1839
+ S ++ D+++ K L+ + E S D A+ + +
Sbjct: 198 LGNGS------STNGLPDSSQDKNKSLE--------EYYEKESSDAAASQDDGPKGSDVK 243
Query: 1840 HDENEDEDNTNEMGKRKRTTRLVKSNEPEDEEDDDDESDED 1880
+ +++DE++ ++ G L + E E+ E++++E DED
Sbjct: 244 NKKSDDEEDDDQDGDYVEEKELKEDEEEEETEEEEEEEDED 284
|
PPP4R2 (protein phosphatase 4 core regulatory subunit R2) is the regulatory subunit of the histone H2A phosphatase complex. It has been shown to confer resistance to the anticancer drug cisplatin in yeast, and may confer resistance in higher eukaryotes. Length = 285 |
| >gnl|CDD|99928 cd05496, Bromo_WDR9_II, Bromodomain; WDR9 repeat II_like subfamily | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 4e-04
Identities = 18/59 (30%), Positives = 32/59 (54%)
Query: 1391 AEPFLVPVDISQYPAYAYVVEYPVDLTTLRARFQNRFYRRITSAQFDVRYLAANAEKFN 1449
+EPF PVD+ +YP Y +++ P+DL T++ Y DVR + +N++ +
Sbjct: 23 SEPFRQPVDLLKYPDYRDIIDTPMDLGTVKETLFGGNYDDPMEFAKDVRLIFSNSKSYT 81
|
WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. Length = 119 |
| >gnl|CDD|99952 cd05521, Bromo_Rsc1_2_I, Bromodomain, repeat I in Rsc1/2_like subfamily, specific to fungi | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 4e-04
Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 2/89 (2%)
Query: 1382 LEEVMGLSVAEPFLVPVDISQYPAYAYVVEYPVDLTTLRARFQNRFYRRITSAQFDVRYL 1441
L+E G+ + F V YP Y +++ P+ L T++ R + Y D+ +
Sbjct: 16 LKEENGIEIHPIFNVLPLRKDYPDYYKIIKNPLSLNTVKKRLPH--YTNAQEFVNDLAQI 73
Query: 1442 AANAEKFNEPHSNIVKYARIITDLLLRII 1470
NA +N S I KYA I+ + +I
Sbjct: 74 PWNARLYNTKGSVIYKYALILEKYINDVI 102
|
Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. Length = 106 |
| >gnl|CDD|227408 COG5076, COG5076, Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription] | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 5e-04
Identities = 48/198 (24%), Positives = 73/198 (36%), Gaps = 44/198 (22%)
Query: 1 LTTLRARFQNRFYRRITSAQFDVRYLAANAEKFNEPHSNIVKYARIITDLLLRIIKEPNP 60
L T++ + +N Y+ D+ + N + +N P S++ A+ + L++I+E
Sbjct: 191 LLTIQKKLKNGRYKSFEEFVSDLNLMFDNCKLYNGPDSSVYVDAKELEKYFLKLIEEIPE 250
Query: 61 VDVPVVYHELLQNYETSSSEEEEEEDSKSRQRRVRPTAVTRAQREAMNQKKLKRPFNWKN 120
E+L+ EE EE +S V T A A
Sbjct: 251 --------EMLELSIKPGREEREERES------VLITNSQ-AHVGAW------------- 282
Query: 121 ECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVK 180
PF +PV + PDY K + PMDL T +LR + Y FV+
Sbjct: 283 ----------------PFLRPVSDEEVPDYYKDIRDPMDLSTKELKLRNNYYRPEETFVR 326
Query: 181 DVKRVFHNSRNYNQNKRS 198
D K F N YN
Sbjct: 327 DAKLFFDNCVMYNGEVTD 344
|
Length = 371 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 5e-04
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 549 TLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWK 592
+ + L GH G +T V F P +G YLAS S DG I W
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSP---DG-KYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|99953 cd05522, Bromo_Rsc1_2_II, Bromodomain, repeat II in Rsc1/2_like subfamily, specific to fungi | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 5e-04
Identities = 18/59 (30%), Positives = 34/59 (57%)
Query: 137 PFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQN 195
F K DK P+Y + + P+ L I+++++ Y+S F+ D+ +F N++ YN+N
Sbjct: 27 HFEKLPDKAREPEYYQEISNPISLDDIKKKVKRRKYKSFDQFLNDLNLMFENAKLYNEN 85
|
Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. Length = 104 |
| >gnl|CDD|99953 cd05522, Bromo_Rsc1_2_II, Bromodomain, repeat II in Rsc1/2_like subfamily, specific to fungi | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 5e-04
Identities = 18/59 (30%), Positives = 34/59 (57%)
Query: 1552 PFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQN 1610
F K DK P+Y + + P+ L I+++++ Y+S F+ D+ +F N++ YN+N
Sbjct: 27 HFEKLPDKAREPEYYQEISNPISLDDIKKKVKRRKYKSFDQFLNDLNLMFENAKLYNEN 85
|
Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. Length = 104 |
| >gnl|CDD|99945 cd05513, Bromo_brd7_like, Bromodomain, brd7_like subgroup | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 5e-04
Identities = 19/56 (33%), Positives = 31/56 (55%)
Query: 138 FRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYN 193
F PV P Y I+ PMD T++E+++ ++Y+S +F D K + N+ YN
Sbjct: 22 FAFPVTDFIAPGYSSIIKHPMDFSTMKEKIKNNDYQSIEEFKDDFKLMCENAMKYN 77
|
The BRD7 gene encodes a nuclear protein that has been shown to inhibit cell growth and the progression of the cell cycle by regulating cell-cycle genes at the transcriptional level. BRD7 has been identified as a gene involved in nasopharyngeal carcinoma. The protein interacts with acetylated histone H3 via its bromodomain. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. Length = 98 |
| >gnl|CDD|99945 cd05513, Bromo_brd7_like, Bromodomain, brd7_like subgroup | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 5e-04
Identities = 19/56 (33%), Positives = 31/56 (55%)
Query: 1553 FRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYN 1608
F PV P Y I+ PMD T++E+++ ++Y+S +F D K + N+ YN
Sbjct: 22 FAFPVTDFIAPGYSSIIKHPMDFSTMKEKIKNNDYQSIEEFKDDFKLMCENAMKYN 77
|
The BRD7 gene encodes a nuclear protein that has been shown to inhibit cell growth and the progression of the cell cycle by regulating cell-cycle genes at the transcriptional level. BRD7 has been identified as a gene involved in nasopharyngeal carcinoma. The protein interacts with acetylated histone H3 via its bromodomain. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. Length = 98 |
| >gnl|CDD|99951 cd05520, Bromo_polybromo_III, Bromodomain, polybromo repeat III | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 5e-04
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 135 SEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQ 194
+EPF K K +PDY + + P+ L IR +L+ YE+ + D+ +F N++ YN
Sbjct: 24 AEPFLKLPSKRKYPDYYQEIKNPISLQQIRTKLKNGEYETLEELEADLNLMFENAKRYNV 83
Query: 195 NKRSKIYIMTTRL 207
S+IY +L
Sbjct: 84 -PNSRIYKDAEKL 95
|
Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine. Length = 103 |
| >gnl|CDD|99951 cd05520, Bromo_polybromo_III, Bromodomain, polybromo repeat III | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 5e-04
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 1550 SEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQ 1609
+EPF K K +PDY + + P+ L IR +L+ YE+ + D+ +F N++ YN
Sbjct: 24 AEPFLKLPSKRKYPDYYQEIKNPISLQQIRTKLKNGEYETLEELEADLNLMFENAKRYNV 83
Query: 1610 NKRSKIYIMTTRL 1622
S+IY +L
Sbjct: 84 -PNSRIYKDAEKL 95
|
Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine. Length = 103 |
| >gnl|CDD|215921 pfam00439, Bromodomain, Bromodomain | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 8e-04
Identities = 13/46 (28%), Positives = 25/46 (54%)
Query: 1 LTTLRARFQNRFYRRITSAQFDVRYLAANAEKFNEPHSNIVKYARI 46
L+T+R + ++ Y+ + DV + +NA +N S+I K A+
Sbjct: 39 LSTIRQKLKSGKYKSLAEFLKDVELIFSNAITYNGEDSDIYKDAKK 84
|
Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. Length = 84 |
| >gnl|CDD|99933 cd05501, Bromo_SP100C_like, Bromodomain, SP100C_like subfamily | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 8e-04
Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Query: 122 CREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKD 181
C +L ++ S F DY + + PM L ++E L Y + FV+D
Sbjct: 7 CEFLLLKVYCMSKSGFFIS--KPYYIRDYCQGIKEPMWLNKVKERLNERVYHTVEGFVRD 64
Query: 182 VKRVFHNSRNYNQNKR 197
++ +FHN + + ++
Sbjct: 65 MRLIFHNHKLFYKDDD 80
|
The SP100C protein is a splice variant of SP100, a major component of PML-SP100 nuclear bodies (NBs), which are poorly understood. It is covalently modified by SUMO-1 and may play a role in processes at the chromatin level. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. Length = 102 |
| >gnl|CDD|99933 cd05501, Bromo_SP100C_like, Bromodomain, SP100C_like subfamily | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 8e-04
Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Query: 1537 CREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKD 1596
C +L ++ S F DY + + PM L ++E L Y + FV+D
Sbjct: 7 CEFLLLKVYCMSKSGFFIS--KPYYIRDYCQGIKEPMWLNKVKERLNERVYHTVEGFVRD 64
Query: 1597 VKRVFHNSRNYNQNKR 1612
++ +FHN + + ++
Sbjct: 65 MRLIFHNHKLFYKDDD 80
|
The SP100C protein is a splice variant of SP100, a major component of PML-SP100 nuclear bodies (NBs), which are poorly understood. It is covalently modified by SUMO-1 and may play a role in processes at the chromatin level. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. Length = 102 |
| >gnl|CDD|197636 smart00297, BROMO, bromo domain | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 9e-04
Identities = 13/57 (22%), Positives = 27/57 (47%)
Query: 1 LTTLRARFQNRFYRRITSAQFDVRYLAANAEKFNEPHSNIVKYARIITDLLLRIIKE 57
L T++ + +N Y + D + +NA +N P S + K A+ + + ++E
Sbjct: 50 LKTIKKKLENGKYSSVEEFVADFNLMFSNARTYNGPDSEVYKDAKKLEKFFEKKLRE 106
|
Length = 107 |
| >gnl|CDD|99929 cd05497, Bromo_Brdt_I_like, Bromodomain, Brdt_like subfamily, repeat I | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.001
Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 1393 PFLVPVDIS--QYPAYAYVVEYPVDLTTLRARFQNRFYRRITSAQFDVRYLAANAEKFNE 1450
PF PVD P Y +++ P+DL T++ R +N +Y + D + N +N+
Sbjct: 25 PFQQPVDAVKLNLPDYHKIIKTPMDLGTIKKRLENNYYWSASECIQDFNTMFTNCYIYNK 84
Query: 1451 PHSNIVKYARIITDLLLRIIKE 1472
P ++V A+ + L L+ + +
Sbjct: 85 PGDDVVLMAQTLEKLFLQKLAQ 106
|
Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. Length = 107 |
| >gnl|CDD|99923 cd05491, Bromo_TBP7_like, Bromodomain; TBP7_like subfamily, limited to fungi | Back alignment and domain information |
|---|
Score = 39.4 bits (92), Expect = 0.002
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 158 MDLGTIREELRGDNYESPIDFVKDVKRVFHNSRN 191
MDL TI E L Y +P DF+KD+KR+ +++
Sbjct: 65 MDLDTIEERLWNGYYATPKDFLKDIKRIVRDAKT 98
|
TBP7, or TAT-binding protein homolog 7, is a yeast protein of unknown function that contains AAA-superfamily ATP-ase domains and a bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine. Length = 119 |
| >gnl|CDD|99923 cd05491, Bromo_TBP7_like, Bromodomain; TBP7_like subfamily, limited to fungi | Back alignment and domain information |
|---|
Score = 39.4 bits (92), Expect = 0.002
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 1573 MDLGTIREELRGDNYESPIDFVKDVKRVFHNSRN 1606
MDL TI E L Y +P DF+KD+KR+ +++
Sbjct: 65 MDLDTIEERLWNGYYATPKDFLKDIKRIVRDAKT 98
|
TBP7, or TAT-binding protein homolog 7, is a yeast protein of unknown function that contains AAA-superfamily ATP-ase domains and a bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine. Length = 119 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 36.9 bits (86), Expect = 0.003
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Query: 552 PISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWK 592
+ L GH G +T V F P +G N LAS S DG + W
Sbjct: 3 LLRTLKGHTGPVTSVAFSP---DG-NLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 36.9 bits (86), Expect = 0.003
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 474 GHLSAVFCVLFDKLGEVIVTGADDLLIKLW 503
GH V V F G ++ +G+DD +++W
Sbjct: 9 GHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38
|
Length = 39 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 36.5 bits (85), Expect = 0.004
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 474 GHLSAVFCVLFDKLGEVIVTGADDLLIKLW 503
GH V V F G+ + +G+DD IKLW
Sbjct: 10 GHTGPVTSVAFSPDGKYLASGSDDGTIKLW 39
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 36.1 bits (84), Expect = 0.004
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 618 NAHILCSSFSPGGLFLATGSGDHHVRVYK 646
+ +FSP G +LA+GS D ++++
Sbjct: 12 TGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|227615 COG5296, COG5296, Transcription factor involved in TATA site selection and in elongation by RNA polymerase II [Transcription] | Back alignment and domain information |
|---|
Score = 41.6 bits (97), Expect = 0.004
Identities = 44/226 (19%), Positives = 77/226 (34%), Gaps = 40/226 (17%)
Query: 1704 AESGNEQVEEVKTRVRRRSSNRSRSNSQDNEENDEEDVDIDNFDPEQPGPSTSYAEPVAS 1763
A +G + + R R +S +E+N+E ++ E G +E
Sbjct: 10 ALAGIDDSDVASNRKRAHDDLDDVLSSSSDEDNNEN----VDYAEESGGEGNEKSEEEKF 65
Query: 1764 TSRGRFAGRAAKRKFKEESASE------SQEDENSIPETDTTEQPAKKLKVLYPKRRGQQ 1817
+ R G KFK+E+ E E+ + E + + + L + Q
Sbjct: 66 KNPYRLEG-----KFKDEADRAKIMAMTEIERESILFEREEEISKLMERRELAIRMEQQH 120
Query: 1818 SEDGSGD-NASEMSELKQDPLSLHDENEDEDNTNEMGKRK-RTTRLVKSN----EPEDEE 1871
G D S E PL+ E E + E+ K + R RL + +
Sbjct: 121 RSSGCTDTRRSTRYE----PLTSAAE-EKKKKLLELKKTREREERLYSERHIELQRFKDY 175
Query: 1872 DDDDES----DEDYSPSTHAVTKRKRSVRVEKSNEVDEDEESDEDY 1913
+ +ES E+Y+PS E ++ ++ E Y
Sbjct: 176 KELEESEQGLQEEYTPSY----------AEEAVEDISRTDDFAELY 211
|
Length = 521 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1915 | |||
| KOG0644|consensus | 1113 | 100.0 | ||
| KOG0271|consensus | 480 | 100.0 | ||
| KOG0271|consensus | 480 | 100.0 | ||
| KOG0272|consensus | 459 | 100.0 | ||
| KOG0273|consensus | 524 | 100.0 | ||
| KOG0286|consensus | 343 | 100.0 | ||
| KOG0291|consensus | 893 | 100.0 | ||
| KOG0272|consensus | 459 | 100.0 | ||
| KOG0319|consensus | 775 | 100.0 | ||
| KOG0319|consensus | 775 | 100.0 | ||
| KOG0318|consensus | 603 | 100.0 | ||
| KOG0279|consensus | 315 | 100.0 | ||
| KOG0318|consensus | 603 | 100.0 | ||
| KOG0306|consensus | 888 | 100.0 | ||
| KOG0315|consensus | 311 | 100.0 | ||
| KOG0291|consensus | 893 | 100.0 | ||
| KOG0286|consensus | 343 | 100.0 | ||
| KOG0295|consensus | 406 | 100.0 | ||
| KOG0285|consensus | 460 | 100.0 | ||
| KOG0265|consensus | 338 | 100.0 | ||
| KOG0279|consensus | 315 | 100.0 | ||
| KOG0296|consensus | 399 | 100.0 | ||
| KOG0293|consensus | 519 | 100.0 | ||
| KOG0645|consensus | 312 | 100.0 | ||
| KOG0315|consensus | 311 | 100.0 | ||
| KOG0282|consensus | 503 | 99.98 | ||
| KOG0306|consensus | 888 | 99.98 | ||
| KOG0281|consensus | 499 | 99.98 | ||
| KOG0263|consensus | 707 | 99.98 | ||
| KOG0273|consensus | 524 | 99.97 | ||
| KOG0296|consensus | 399 | 99.97 | ||
| KOG0284|consensus | 464 | 99.97 | ||
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.97 | |
| KOG0284|consensus | 464 | 99.97 | ||
| KOG0276|consensus | 794 | 99.97 | ||
| KOG0292|consensus | 1202 | 99.97 | ||
| KOG0295|consensus | 406 | 99.97 | ||
| KOG0645|consensus | 312 | 99.97 | ||
| KOG0263|consensus | 707 | 99.97 | ||
| KOG0266|consensus | 456 | 99.97 | ||
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.97 | |
| KOG0281|consensus | 499 | 99.97 | ||
| KOG0316|consensus | 307 | 99.97 | ||
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.97 | |
| KOG0276|consensus | 794 | 99.97 | ||
| KOG0282|consensus | 503 | 99.97 | ||
| KOG0292|consensus | 1202 | 99.97 | ||
| KOG1474|consensus | 640 | 99.96 | ||
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.96 | |
| KOG0275|consensus | 508 | 99.96 | ||
| KOG0293|consensus | 519 | 99.96 | ||
| KOG0266|consensus | 456 | 99.96 | ||
| KOG0643|consensus | 327 | 99.96 | ||
| KOG1408|consensus | 1080 | 99.96 | ||
| KOG0265|consensus | 338 | 99.96 | ||
| KOG1474|consensus | 640 | 99.96 | ||
| KOG0313|consensus | 423 | 99.96 | ||
| KOG0640|consensus | 430 | 99.96 | ||
| KOG0278|consensus | 334 | 99.96 | ||
| KOG0288|consensus | 459 | 99.95 | ||
| KOG1539|consensus | 910 | 99.95 | ||
| KOG0772|consensus | 641 | 99.95 | ||
| KOG0313|consensus | 423 | 99.95 | ||
| KOG0285|consensus | 460 | 99.95 | ||
| KOG0643|consensus | 327 | 99.95 | ||
| KOG1539|consensus | 910 | 99.95 | ||
| KOG0278|consensus | 334 | 99.95 | ||
| KOG0274|consensus | 537 | 99.95 | ||
| KOG1446|consensus | 311 | 99.95 | ||
| KOG1407|consensus | 313 | 99.95 | ||
| KOG1407|consensus | 313 | 99.94 | ||
| KOG0289|consensus | 506 | 99.94 | ||
| KOG0283|consensus | 712 | 99.94 | ||
| KOG0973|consensus | 942 | 99.94 | ||
| KOG0300|consensus | 481 | 99.94 | ||
| KOG0274|consensus | 537 | 99.94 | ||
| KOG0275|consensus | 508 | 99.94 | ||
| KOG0305|consensus | 484 | 99.94 | ||
| KOG0640|consensus | 430 | 99.94 | ||
| KOG0308|consensus | 735 | 99.94 | ||
| KOG0772|consensus | 641 | 99.94 | ||
| KOG0299|consensus | 479 | 99.94 | ||
| cd05496 | 119 | Bromo_WDR9_II Bromodomain; WDR9 repeat II_like sub | 99.94 | |
| KOG0268|consensus | 433 | 99.94 | ||
| KOG0277|consensus | 311 | 99.93 | ||
| KOG0641|consensus | 350 | 99.93 | ||
| KOG2106|consensus | 626 | 99.93 | ||
| KOG1446|consensus | 311 | 99.93 | ||
| KOG0647|consensus | 347 | 99.93 | ||
| PTZ00421 | 493 | coronin; Provisional | 99.93 | |
| KOG0310|consensus | 487 | 99.93 | ||
| cd05496 | 119 | Bromo_WDR9_II Bromodomain; WDR9 repeat II_like sub | 99.93 | |
| KOG1063|consensus | 764 | 99.92 | ||
| KOG0277|consensus | 311 | 99.92 | ||
| KOG0283|consensus | 712 | 99.92 | ||
| KOG2096|consensus | 420 | 99.92 | ||
| KOG0301|consensus | 745 | 99.92 | ||
| KOG0288|consensus | 459 | 99.92 | ||
| KOG2048|consensus | 691 | 99.92 | ||
| KOG0316|consensus | 307 | 99.92 | ||
| KOG0268|consensus | 433 | 99.92 | ||
| KOG1408|consensus | 1080 | 99.92 | ||
| KOG0308|consensus | 735 | 99.92 | ||
| KOG0310|consensus | 487 | 99.92 | ||
| PTZ00420 | 568 | coronin; Provisional | 99.91 | |
| KOG0973|consensus | 942 | 99.91 | ||
| PTZ00421 | 493 | coronin; Provisional | 99.91 | |
| PTZ00420 | 568 | coronin; Provisional | 99.91 | |
| cd05505 | 97 | Bromo_WSTF_like Bromodomain; Williams syndrome tra | 99.91 | |
| cd05495 | 108 | Bromo_cbp_like Bromodomain, cbp_like subfamily. Cb | 99.91 | |
| KOG2106|consensus | 626 | 99.91 | ||
| KOG0294|consensus | 362 | 99.91 | ||
| KOG1332|consensus | 299 | 99.91 | ||
| KOG1273|consensus | 405 | 99.91 | ||
| KOG2048|consensus | 691 | 99.91 | ||
| KOG0301|consensus | 745 | 99.91 | ||
| KOG0300|consensus | 481 | 99.91 | ||
| KOG1063|consensus | 764 | 99.9 | ||
| cd05497 | 107 | Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily | 99.9 | |
| KOG1036|consensus | 323 | 99.9 | ||
| cd05510 | 112 | Bromo_SPT7_like Bromodomain; SPT7_like subfamily. | 99.9 | |
| KOG0294|consensus | 362 | 99.9 | ||
| KOG0641|consensus | 350 | 99.9 | ||
| KOG1036|consensus | 323 | 99.9 | ||
| KOG0305|consensus | 484 | 99.9 | ||
| cd05504 | 115 | Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_li | 99.9 | |
| cd05501 | 102 | Bromo_SP100C_like Bromodomain, SP100C_like subfami | 99.9 | |
| cd05507 | 104 | Bromo_brd8_like Bromodomain, brd8_like subgroup. I | 99.9 | |
| cd05503 | 97 | Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like s | 99.9 | |
| KOG0646|consensus | 476 | 99.89 | ||
| KOG4283|consensus | 397 | 99.89 | ||
| cd05495 | 108 | Bromo_cbp_like Bromodomain, cbp_like subfamily. Cb | 99.89 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.89 | |
| KOG0289|consensus | 506 | 99.89 | ||
| cd05505 | 97 | Bromo_WSTF_like Bromodomain; Williams syndrome tra | 99.89 | |
| KOG0264|consensus | 422 | 99.89 | ||
| KOG1445|consensus | 1012 | 99.89 | ||
| KOG1332|consensus | 299 | 99.89 | ||
| cd05508 | 99 | Bromo_RACK7 Bromodomain, RACK7_like subfamily. RAC | 99.89 | |
| KOG0299|consensus | 479 | 99.88 | ||
| KOG4283|consensus | 397 | 99.88 | ||
| KOG0646|consensus | 476 | 99.88 | ||
| KOG0269|consensus | 839 | 99.88 | ||
| KOG1274|consensus | 933 | 99.88 | ||
| KOG0639|consensus | 705 | 99.88 | ||
| cd05502 | 109 | Bromo_tif1_like Bromodomain; tif1_like subfamily. | 99.88 | |
| KOG2096|consensus | 420 | 99.88 | ||
| cd05516 | 107 | Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, s | 99.88 | |
| KOG2445|consensus | 361 | 99.88 | ||
| cd05509 | 101 | Bromo_gcn5_like Bromodomain; Gcn5_like subfamily. | 99.88 | |
| KOG0321|consensus | 720 | 99.88 | ||
| KOG0647|consensus | 347 | 99.88 | ||
| cd05507 | 104 | Bromo_brd8_like Bromodomain, brd8_like subgroup. I | 99.88 | |
| cd05497 | 107 | Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily | 99.88 | |
| cd05510 | 112 | Bromo_SPT7_like Bromodomain; SPT7_like subfamily. | 99.87 | |
| cd05506 | 99 | Bromo_plant1 Bromodomain, uncharacterized subfamil | 99.87 | |
| cd05513 | 98 | Bromo_brd7_like Bromodomain, brd7_like subgroup. T | 99.87 | |
| KOG0650|consensus | 733 | 99.87 | ||
| KOG1538|consensus | 1081 | 99.87 | ||
| KOG0264|consensus | 422 | 99.87 | ||
| cd05528 | 112 | Bromo_AAA Bromodomain; sub-family co-occurring wit | 99.87 | |
| cd05499 | 102 | Bromo_BDF1_2_II Bromodomain. BDF1/BDF2 like subfam | 99.87 | |
| cd05498 | 102 | Bromo_Brdt_II_like Bromodomain, Brdt_like subfamil | 99.87 | |
| cd05504 | 115 | Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_li | 99.87 | |
| cd05503 | 97 | Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like s | 99.87 | |
| cd05516 | 107 | Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, s | 99.87 | |
| cd05512 | 98 | Bromo_brd1_like Bromodomain; brd1_like subfamily. | 99.86 | |
| cd05500 | 103 | Bromo_BDF1_2_I Bromodomain. BDF1/BDF2 like subfami | 99.86 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.86 | |
| cd05501 | 102 | Bromo_SP100C_like Bromodomain, SP100C_like subfami | 99.86 | |
| KOG2055|consensus | 514 | 99.86 | ||
| cd05511 | 112 | Bromo_TFIID Bromodomain, TFIID-like subfamily. Hum | 99.85 | |
| cd05502 | 109 | Bromo_tif1_like Bromodomain; tif1_like subfamily. | 99.85 | |
| cd05508 | 99 | Bromo_RACK7 Bromodomain, RACK7_like subfamily. RAC | 99.85 | |
| KOG2055|consensus | 514 | 99.85 | ||
| KOG0639|consensus | 705 | 99.85 | ||
| KOG0267|consensus | 825 | 99.85 | ||
| cd05524 | 113 | Bromo_polybromo_I Bromodomain, polybromo repeat I. | 99.85 | |
| cd05519 | 103 | Bromo_SNF2 Bromodomain, SNF2-like subfamily, speci | 99.85 | |
| cd05509 | 101 | Bromo_gcn5_like Bromodomain; Gcn5_like subfamily. | 99.85 | |
| KOG1274|consensus | 933 | 99.85 | ||
| cd05515 | 105 | Bromo_polybromo_V Bromodomain, polybromo repeat V. | 99.85 | |
| cd05528 | 112 | Bromo_AAA Bromodomain; sub-family co-occurring wit | 99.84 | |
| KOG4328|consensus | 498 | 99.84 | ||
| cd05517 | 103 | Bromo_polybromo_II Bromodomain, polybromo repeat I | 99.84 | |
| KOG4328|consensus | 498 | 99.84 | ||
| cd05506 | 99 | Bromo_plant1 Bromodomain, uncharacterized subfamil | 99.84 | |
| cd05513 | 98 | Bromo_brd7_like Bromodomain, brd7_like subgroup. T | 99.84 | |
| cd05499 | 102 | Bromo_BDF1_2_II Bromodomain. BDF1/BDF2 like subfam | 99.84 | |
| cd05498 | 102 | Bromo_Brdt_II_like Bromodomain, Brdt_like subfamil | 99.84 | |
| cd05525 | 106 | Bromo_ASH1 Bromodomain; ASH1_like sub-family. ASH1 | 99.84 | |
| cd05520 | 103 | Bromo_polybromo_III Bromodomain, polybromo repeat | 99.84 | |
| cd05518 | 103 | Bromo_polybromo_IV Bromodomain, polybromo repeat I | 99.84 | |
| KOG0270|consensus | 463 | 99.83 | ||
| cd05500 | 103 | Bromo_BDF1_2_I Bromodomain. BDF1/BDF2 like subfami | 99.83 | |
| cd05524 | 113 | Bromo_polybromo_I Bromodomain, polybromo repeat I. | 99.83 | |
| cd05515 | 105 | Bromo_polybromo_V Bromodomain, polybromo repeat V. | 99.83 | |
| cd05512 | 98 | Bromo_brd1_like Bromodomain; brd1_like subfamily. | 99.83 | |
| cd05525 | 106 | Bromo_ASH1 Bromodomain; ASH1_like sub-family. ASH1 | 99.83 | |
| cd05517 | 103 | Bromo_polybromo_II Bromodomain, polybromo repeat I | 99.83 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.83 | |
| KOG4227|consensus | 609 | 99.83 | ||
| cd05529 | 128 | Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like | 99.83 | |
| cd05519 | 103 | Bromo_SNF2 Bromodomain, SNF2-like subfamily, speci | 99.83 | |
| KOG0269|consensus | 839 | 99.83 | ||
| cd05511 | 112 | Bromo_TFIID Bromodomain, TFIID-like subfamily. Hum | 99.83 | |
| cd05520 | 103 | Bromo_polybromo_III Bromodomain, polybromo repeat | 99.82 | |
| KOG1273|consensus | 405 | 99.82 | ||
| cd05518 | 103 | Bromo_polybromo_IV Bromodomain, polybromo repeat I | 99.82 | |
| KOG0321|consensus | 720 | 99.82 | ||
| COG5076 | 371 | Transcription factor involved in chromatin remodel | 99.82 | |
| KOG0302|consensus | 440 | 99.82 | ||
| KOG0267|consensus | 825 | 99.82 | ||
| cd05529 | 128 | Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like | 99.82 | |
| KOG2445|consensus | 361 | 99.81 | ||
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.81 | |
| KOG1034|consensus | 385 | 99.81 | ||
| KOG0322|consensus | 323 | 99.8 | ||
| cd05521 | 106 | Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_lik | 99.8 | |
| cd05522 | 104 | Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_l | 99.8 | |
| smart00297 | 107 | BROMO bromo domain. | 99.8 | |
| KOG1963|consensus | 792 | 99.8 | ||
| KOG1009|consensus | 434 | 99.79 | ||
| KOG1445|consensus | 1012 | 99.79 | ||
| cd05521 | 106 | Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_lik | 99.79 | |
| KOG0302|consensus | 440 | 99.79 | ||
| KOG0307|consensus | 1049 | 99.79 | ||
| KOG0270|consensus | 463 | 99.79 | ||
| PF06507 | 83 | Auxin_resp: Auxin response factor; InterPro: IPR01 | 99.78 | |
| KOG4378|consensus | 673 | 99.78 | ||
| KOG0307|consensus | 1049 | 99.78 | ||
| KOG4378|consensus | 673 | 99.78 | ||
| KOG1963|consensus | 792 | 99.78 | ||
| KOG0650|consensus | 733 | 99.77 | ||
| KOG1472|consensus | 720 | 99.76 | ||
| KOG1034|consensus | 385 | 99.76 | ||
| cd05522 | 104 | Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_l | 99.76 | |
| smart00297 | 107 | BROMO bromo domain. | 99.76 | |
| KOG1188|consensus | 376 | 99.75 | ||
| KOG1009|consensus | 434 | 99.75 | ||
| PF00439 | 84 | Bromodomain: Bromodomain; InterPro: IPR001487 Brom | 99.74 | |
| KOG0008|consensus | 1563 | 99.74 | ||
| KOG0642|consensus | 577 | 99.74 | ||
| KOG2919|consensus | 406 | 99.74 | ||
| cd05492 | 109 | Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family | 99.74 | |
| KOG1188|consensus | 376 | 99.74 | ||
| KOG0642|consensus | 577 | 99.74 | ||
| cd04369 | 99 | Bromodomain Bromodomain. Bromodomains are found in | 99.73 | |
| KOG4227|consensus | 609 | 99.73 | ||
| KOG2919|consensus | 406 | 99.73 | ||
| cd05526 | 110 | Bromo_polybromo_VI Bromodomain, polybromo repeat V | 99.72 | |
| KOG1587|consensus | 555 | 99.71 | ||
| KOG0322|consensus | 323 | 99.71 | ||
| KOG1538|consensus | 1081 | 99.7 | ||
| PF00439 | 84 | Bromodomain: Bromodomain; InterPro: IPR001487 Brom | 99.7 | |
| KOG0303|consensus | 472 | 99.7 | ||
| KOG0290|consensus | 364 | 99.7 | ||
| KOG1587|consensus | 555 | 99.69 | ||
| cd04369 | 99 | Bromodomain Bromodomain. Bromodomains are found in | 99.69 | |
| KOG1517|consensus | 1387 | 99.69 | ||
| cd05492 | 109 | Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family | 99.69 | |
| KOG1240|consensus | 1431 | 99.68 | ||
| KOG1832|consensus | 1516 | 99.68 | ||
| KOG1334|consensus | 559 | 99.68 | ||
| KOG1334|consensus | 559 | 99.68 | ||
| KOG1007|consensus | 370 | 99.67 | ||
| cd05526 | 110 | Bromo_polybromo_VI Bromodomain, polybromo repeat V | 99.67 | |
| KOG1007|consensus | 370 | 99.67 | ||
| KOG1517|consensus | 1387 | 99.67 | ||
| KOG1310|consensus | 758 | 99.66 | ||
| KOG0649|consensus | 325 | 99.66 | ||
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.64 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.63 | |
| KOG4497|consensus | 447 | 99.63 | ||
| KOG0303|consensus | 472 | 99.62 | ||
| KOG1524|consensus | 737 | 99.61 | ||
| KOG1523|consensus | 361 | 99.59 | ||
| KOG0290|consensus | 364 | 99.57 | ||
| KOG1245|consensus | 1404 | 99.57 | ||
| KOG1524|consensus | 737 | 99.57 | ||
| KOG0771|consensus | 398 | 99.57 | ||
| KOG2110|consensus | 391 | 99.56 | ||
| KOG1523|consensus | 361 | 99.56 | ||
| KOG1472|consensus | 720 | 99.56 | ||
| KOG0644|consensus | 1113 | 99.54 | ||
| KOG0649|consensus | 325 | 99.54 | ||
| KOG1310|consensus | 758 | 99.54 | ||
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.53 | |
| KOG2110|consensus | 391 | 99.53 | ||
| KOG0771|consensus | 398 | 99.53 | ||
| KOG4497|consensus | 447 | 99.52 | ||
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.51 | |
| KOG1240|consensus | 1431 | 99.51 | ||
| KOG1272|consensus | 545 | 99.51 | ||
| COG5076 | 371 | Transcription factor involved in chromatin remodel | 99.5 | |
| KOG1245|consensus | 1404 | 99.49 | ||
| KOG2139|consensus | 445 | 99.49 | ||
| KOG1354|consensus | 433 | 99.49 | ||
| KOG2315|consensus | 566 | 99.48 | ||
| KOG0008|consensus | 1563 | 99.46 | ||
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.45 | |
| KOG2394|consensus | 636 | 99.43 | ||
| KOG1828|consensus | 418 | 99.43 | ||
| KOG2321|consensus | 703 | 99.42 | ||
| KOG2139|consensus | 445 | 99.4 | ||
| KOG2321|consensus | 703 | 99.39 | ||
| KOG2111|consensus | 346 | 99.38 | ||
| KOG1272|consensus | 545 | 99.38 | ||
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.36 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.35 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.35 | |
| KOG2111|consensus | 346 | 99.34 | ||
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.34 | |
| KOG1912|consensus | 1062 | 99.34 | ||
| KOG1409|consensus | 404 | 99.33 | ||
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.32 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.32 | |
| KOG3881|consensus | 412 | 99.31 | ||
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.28 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.28 | |
| KOG0974|consensus | 967 | 99.27 | ||
| KOG2394|consensus | 636 | 99.26 | ||
| KOG1354|consensus | 433 | 99.26 | ||
| KOG0974|consensus | 967 | 99.25 | ||
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.23 | |
| KOG1827|consensus | 629 | 99.22 | ||
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.22 | |
| KOG3881|consensus | 412 | 99.21 | ||
| KOG2041|consensus | 1189 | 99.2 | ||
| KOG1409|consensus | 404 | 99.2 | ||
| KOG1827|consensus | 629 | 99.2 | ||
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.16 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.15 | |
| cd05494 | 114 | Bromodomain_1 Bromodomain; uncharacterized subfami | 99.15 | |
| KOG1912|consensus | 1062 | 99.14 | ||
| KOG2315|consensus | 566 | 99.14 | ||
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.13 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.13 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.12 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.11 | |
| KOG2314|consensus | 698 | 99.11 | ||
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.1 | |
| KOG4547|consensus | 541 | 99.1 | ||
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.1 | |
| KOG1828|consensus | 418 | 99.08 | ||
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.08 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.05 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 99.05 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.04 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.02 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 99.01 | |
| KOG4190|consensus | 1034 | 99.0 | ||
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.0 | |
| KOG0309|consensus | 1081 | 99.0 | ||
| KOG2041|consensus | 1189 | 99.0 | ||
| KOG1064|consensus | 2439 | 98.99 | ||
| KOG4547|consensus | 541 | 98.98 | ||
| KOG1064|consensus | 2439 | 98.98 | ||
| KOG4190|consensus | 1034 | 98.97 | ||
| KOG2314|consensus | 698 | 98.96 | ||
| cd05494 | 114 | Bromodomain_1 Bromodomain; uncharacterized subfami | 98.96 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.94 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 98.94 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 98.94 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 98.93 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 98.92 | |
| KOG0280|consensus | 339 | 98.92 | ||
| KOG4532|consensus | 344 | 98.9 | ||
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 98.88 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 98.84 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.84 | |
| KOG0386|consensus | 1157 | 98.82 | ||
| KOG0955|consensus | 1051 | 98.82 | ||
| cd05491 | 119 | Bromo_TBP7_like Bromodomain; TBP7_like subfamily, | 98.8 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.79 | |
| KOG0386|consensus | 1157 | 98.78 | ||
| KOG0280|consensus | 339 | 98.77 | ||
| cd05491 | 119 | Bromo_TBP7_like Bromodomain; TBP7_like subfamily, | 98.73 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 98.73 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.72 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.69 | |
| KOG0309|consensus | 1081 | 98.68 | ||
| KOG4714|consensus | 319 | 98.65 | ||
| KOG0882|consensus | 558 | 98.65 | ||
| KOG1645|consensus | 463 | 98.63 | ||
| KOG0955|consensus | 1051 | 98.61 | ||
| KOG1832|consensus | 1516 | 98.57 | ||
| KOG3914|consensus | 390 | 98.57 | ||
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 98.5 | |
| KOG4532|consensus | 344 | 98.44 | ||
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.43 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.42 | |
| KOG3914|consensus | 390 | 98.4 | ||
| KOG0882|consensus | 558 | 98.39 | ||
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.37 | |
| KOG1275|consensus | 1118 | 98.36 | ||
| KOG1920|consensus | 1265 | 98.33 | ||
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.3 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.3 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.29 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.26 | |
| KOG4714|consensus | 319 | 98.23 | ||
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.22 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 98.21 | |
| KOG2114|consensus | 933 | 98.21 | ||
| KOG4649|consensus | 354 | 98.19 | ||
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.17 | |
| KOG2114|consensus | 933 | 98.16 | ||
| KOG1275|consensus | 1118 | 98.15 | ||
| KOG2066|consensus | 846 | 98.11 | ||
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.1 | |
| KOG1920|consensus | 1265 | 98.08 | ||
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.07 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.06 | |
| KOG1645|consensus | 463 | 98.06 | ||
| KOG3617|consensus | 1416 | 98.05 | ||
| KOG2695|consensus | 425 | 98.05 | ||
| KOG2695|consensus | 425 | 98.05 | ||
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 98.03 | |
| KOG2066|consensus | 846 | 98.01 | ||
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.0 | |
| KOG4649|consensus | 354 | 97.99 | ||
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 97.97 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 97.93 | |
| KOG3621|consensus | 726 | 97.84 | ||
| KOG1008|consensus | 783 | 97.84 | ||
| KOG3621|consensus | 726 | 97.83 | ||
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 97.81 | |
| KOG1897|consensus | 1096 | 97.8 | ||
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 97.8 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.74 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 97.73 | |
| KOG3617|consensus | 1416 | 97.73 | ||
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 97.6 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 97.58 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 97.53 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 97.51 | |
| KOG1008|consensus | 783 | 97.49 | ||
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 97.4 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 97.38 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.33 | |
| KOG1897|consensus | 1096 | 97.32 | ||
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 97.27 | |
| KOG2276|consensus | 473 | 97.22 | ||
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 97.21 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 97.19 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 97.16 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.15 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 97.15 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 97.13 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 97.08 | |
| KOG2079|consensus | 1206 | 97.07 | ||
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 97.04 | |
| KOG2079|consensus | 1206 | 97.02 | ||
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 97.0 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 96.99 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 96.94 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 96.93 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 96.92 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 96.91 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 96.9 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 96.81 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 96.79 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 96.78 | |
| KOG4640|consensus | 665 | 96.66 | ||
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 96.55 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 96.49 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 96.45 | |
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 96.38 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 96.38 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 96.35 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 96.33 | |
| KOG3630|consensus | 1405 | 96.25 | ||
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 96.13 | |
| KOG2444|consensus | 238 | 96.03 | ||
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 96.03 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 96.01 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 95.89 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 95.89 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 95.8 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 95.75 | |
| PRK10115 | 686 | protease 2; Provisional | 95.69 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 95.62 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 95.5 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 95.4 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 95.37 | |
| KOG2444|consensus | 238 | 95.34 | ||
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 95.33 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 95.2 | |
| KOG2395|consensus | 644 | 95.16 | ||
| KOG2395|consensus | 644 | 95.14 | ||
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 95.1 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 95.02 | |
| KOG4499|consensus | 310 | 95.01 | ||
| KOG4441|consensus | 571 | 94.95 | ||
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 94.94 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 94.79 | |
| cd05493 | 131 | Bromo_ALL-1 Bromodomain, ALL-1 like proteins. ALL- | 94.78 | |
| KOG4640|consensus | 665 | 94.74 | ||
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 94.65 |
| >KOG0644|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-121 Score=1091.90 Aligned_cols=1002 Identities=30% Similarity=0.495 Sum_probs=788.8
Q ss_pred cccHHHHHHHHHHhccCChHHHHHHHHHHHHhcCcCcccc-cccCccccccHHHHHhcCCCCCCChHHHHHHHhCCCccc
Q psy9598 304 RLDQELMLLIIKYLEKGPCHEAAKVLTDLVEAKNLLPERY-DWEGATHSQTLAEVASSHPNVTASFLPKICQRLGPLLDK 382 (1915)
Q Consensus 304 ~l~~e~~~li~~~L~~~~~~~aa~~L~~e~~~~~llp~r~-~~~g~~~~~~~~~l~~~~~~i~~~~L~~l~~~l~pll~~ 382 (1915)
....|++++|+++|..|||.+|+++|+.|++++.|||.|+ +|.++++....+.|+..|+||.++||++||++|++.+++
T Consensus 13 l~lsevyflil~~lS~gPcert~~vl~~elee~~ll~pr~~~W~sn~~~dd~eslvls~~hI~kdhll~i~kqlv~~~d~ 92 (1113)
T KOG0644|consen 13 LDLSEVYFLILHYLSAGPCERTAQVLRQELEEYSLLPPRYHDWESNSGNDDGESLVLSYKHIAKDHLLQILKQLVPMLDK 92 (1113)
T ss_pred cchhhHHHHHHhhcccCchhhcchhhhhhhhhhhccCccccccccCCCCcccceeeccccccchHHHHHHHHHhccCcCC
Confidence 3456999999999999999999999999999998876665 699999999999999999999999999999999999999
Q ss_pred ccCCC---CCCcceecccCccccccchhhhccccccchhHHHhcCCCcccccC-ccCccchhhcccCccccccCCCeEEE
Q psy9598 383 ELKPN---FPGLKSLLSGGSQSLLRSEKSLAKSVLSSYDYIARQHGTSLLVPN-SVKVHNTVNVLRSREYSGPLSRSLMI 458 (1915)
Q Consensus 383 ~~~~~---~~~~~tll~~g~~sll~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~v~~l~~r~~tg~~d~~~~i 458 (1915)
..|+. +.+++||||.|+|+|++..+.|...+|+++.+...|.+.+..++. .....+.+.+..+....++...++..
T Consensus 93 ~~pp~~~~~a~vpTlLgtg~qsLl~r~k~~~~~~~~~s~~~~~h~~~~~~~~~sl~s~~~~~~~h~~a~~i~~at~~~ak 172 (1113)
T KOG0644|consen 93 PIPPRYCTIARVPTLLGTGRQSLLRRAKDIRHTVWKGSAFRWPHMHADQVRGVSLRSIGGGFEIHHRAPSIGCATFSIAK 172 (1113)
T ss_pred CCCcceeeeecccchhcchhHHHHhhhhhcccccccccccccccccCcccccceeccCCcchhhhhcCcccccceeeecC
Confidence 99987 788999999999999999999999999999999999998988887 55667788888888888999999999
Q ss_pred ecccCCceeeeEEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeC
Q psy9598 459 SSHKYSNLRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTV 538 (1915)
Q Consensus 459 ~~~~~~~~~~~~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~ 538 (1915)
+...+++++.++.|.||.++|+|++|+..|.+|+||++|..|+||+..++.++.+++||.+.|+.++.+.++.++|++|.
T Consensus 173 Pgtmvqkmk~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~ 252 (1113)
T KOG0644|consen 173 PGTMVQKMKNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASN 252 (1113)
T ss_pred cHHHHHHHHHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCC
Q psy9598 539 DKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGN 618 (1915)
Q Consensus 539 DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~ 618 (1915)
|..|+||.+.++.++.++.||++.|++|+|+|. .+.+.||++++||.+-.. ......|..+.. .
T Consensus 253 D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~--------~sss~dgt~~~wd~r~~~---~~y~prp~~~~~-----~ 316 (1113)
T KOG0644|consen 253 DKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPR--------ASSSDDGTCRIWDARLEP---RIYVPRPLKFTE-----K 316 (1113)
T ss_pred CceEEEEecCCCchHHHHhccccceeeeccCcc--------ccCCCCCceEeccccccc---cccCCCCCCccc-----c
Confidence 999999999999999999999999999999993 378899999999987211 111111111110 0
Q ss_pred CceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceE
Q psy9598 619 AHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWR 698 (1915)
Q Consensus 619 ~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~ 698 (1915)
..+.++.|..++..++||+.|+....|.+....|.
T Consensus 317 ---------------------------------------------~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~ 351 (1113)
T KOG0644|consen 317 ---------------------------------------------DLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWR 351 (1113)
T ss_pred ---------------------------------------------cceeeeeccccccccccccCCcccccchhhHhhhh
Confidence 22344455556666677777777666655433322
Q ss_pred EeeecccccCCCCccccccccccccEEEEEECCCC-CEEEEEEecCCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCC
Q psy9598 699 FIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASD-RWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDS 777 (1915)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg-~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg 777 (1915)
.. .+..+.++.+- .+.+++-. +..+++|++.+|.+++.+.+|...++.+.+||++.
T Consensus 352 ~~----------------------~lif~t~ssd~~~~~~~ar~-~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ 408 (1113)
T KOG0644|consen 352 SN----------------------LLIFVTRSSDLSSIVVTARN-DHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNP 408 (1113)
T ss_pred cc----------------------ceEEEeccccccccceeeee-eeEeeeeecccchhhhhhcccccceeeeeecCCCc
Confidence 11 11112222121 34455555 88999999999999999999999999999999999
Q ss_pred CEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcccccCCCcee
Q psy9598 778 RVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGGFKRPQNIPRELF 857 (1915)
Q Consensus 778 ~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl~s~~~~~~l~~~~~ 857 (1915)
.+..++|.||.+.|||+..|.+ ++.+. .+++.+.+.+||+||..+++.+..|+++|++.+.++.....+.++|
T Consensus 409 ri~msag~dgst~iwdi~eg~p--ik~y~-----~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~s~k~ak~dqf 481 (1113)
T KOG0644|consen 409 RIAMSAGYDGSTIIWDIWEGIP--IKHYF-----IGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSKSQKKAKYDQF 481 (1113)
T ss_pred HhhhhccCCCceEeeecccCCc--ceeee-----cccceeeccccCCCCceEecCCCCCceEEeccCCCccccccccceE
Confidence 9999999999999999999988 66665 3478899999999999999999999999999999999999999999
Q ss_pred ecCCCCeeeecCCCccceeecccCCCCCcCCCCcccCCCCCCCCCCCcccccCCCCCCCCCcccccccCCCCCceeeecc
Q psy9598 858 FHTDYRTLNRPNGLFEPTYDEVTNLPPHLMPPPFLVDLNGTPYPPEVQRLVPGRENADDTELLPDITTNDDGHVEIVEGS 937 (1915)
Q Consensus 858 F~~d~~~Lv~~~~~~~~v~D~~t~~~p~~~~~pfl~~~~G~~ypp~~Q~lv~GR~~s~~~~L~~~~~~~~d~~~~~ieg~ 937 (1915)
|+.|+++|+++.+++ |+|.+|++.||.++++|+|+.+++|||..+|+|++||..+..+++.|++++.+.-.-+.++..
T Consensus 482 fl~dyrplirdTn~~--vldqeTq~~ph~~~p~~l~ds~~iphpe~yqtl~q~rr~sa~dh~mp~l~fia~~~~E~e~~V 559 (1113)
T KOG0644|consen 482 FLGDYRPLIRDTNGY--VLDQETQLAPHRNPPDFLCDSDMIPHPEPYQTLFQGRRLSALDHLMPPLEFIATMDWEPEEQV 559 (1113)
T ss_pred eecCcccccccccch--hhhhHhhhccccCCCCceeccCCCcCCchhhhcccccccchhhhcCCcccchhhhccccchhh
Confidence 999999999999999 999999999999999999999999999999999999999999999999977654222222221
Q ss_pred c------------ccCC---CchhhccccccCCCC-Ccc---------------cccc--cccccccCCCCCC-CcccCC
Q psy9598 938 E------------RNGE---RPVEVEGQRHYNDHG-HVY---------------IQTS--HVHVLRSRANGES-SAATEG 983 (1915)
Q Consensus 938 e------------e~gs---~~~~~~~~~~~~~~g-~~~---------------~~~~--~~~~~~~~~~~rr-~g~~~g 983 (1915)
. |..| .+....-+.+...+| .+. ++.- ..+...+..+.++ +|+++|
T Consensus 560 ls~~nds~~~~~~es~seldg~isq~krt~n~r~g~k~s~~~hg~s~ss~~~R~~~Rn~~~~isk~sg~~~~~~sg~~e~ 639 (1113)
T KOG0644|consen 560 LSDQNDSEYNRSPESLSELDGMISQLKRTQNQRMGAKQSKRKHGLSKSSRPPRAAARNASSDISKISGISLDRKSGQVEG 639 (1113)
T ss_pred hhhcccccccCCcccchhhhhhhhhhhhhhccccccchhhccCCCCccccCCcccccccchhhccCCCccccccccCCcc
Confidence 1 1101 111222222222222 111 0110 2255567788888 999999
Q ss_pred CCCCCCCC-----------ccccccccccC-CCchhHHHHH--HHHhhhhhhhhhhHHhhcccCCC----CCCcCc--cc
Q psy9598 984 TSPSGTAP-----------TAQNKNFVKRL-PLSQHKIVVE--RINAFAEIESEEFIKESKKLFDS----STTTQP--LV 1043 (1915)
Q Consensus 984 v~~~~~n~-----------~aw~~r~~~~~-~~~~~~~~~~--~~~~~~~~e~~~~~~e~~~~~~~----~~~~~~--~~ 1043 (1915)
+.|+++|+ .+|+++++|.+ ..+.....++ ....+++.+.+.|..-+|+++.. +..++. .+
T Consensus 640 ~~q~~~~~p~eq~~~~~~~~~wR~e~~vce~legt~pe~ed~~~~~dtdev~rng~kngRKrk~~l~~~~Snksd~vtlV 719 (1113)
T KOG0644|consen 640 VTQMHQNAPSEQIATLRTLQAWRREVVVCEELEGTFPELEDEAMAVDTDEVERNGYKNGRKRKLELRHPLSNKSDSVTLV 719 (1113)
T ss_pred chhhccCCCHHHHhhhhHHHHhhcccCccccccccCccccccccccccchhhhcCCCcccccchhccCccccccccchhh
Confidence 99999877 59999999999 7777777776 55567788888998888888553 222211 11
Q ss_pred cccc-cccccccCCCchhhhhcccccCCCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCCCCCCCccccccc-CCC
Q psy9598 1044 VKKE-KKKKVVRQARTRAEYSEHIQDQYEDPDNLSLSGSEESASDSDQSQVDVSDLCESSSSSGGTSSSDYSDWIH-EGV 1121 (1915)
Q Consensus 1044 ~~~~-r~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sd~~~-~g~ 1121 (1915)
.... -++.+.+.++.+-.+. .++..+..--+.+.+.++..-...+.++.......+...++++.||-|++|++ .++
T Consensus 720 ~~d~~~~~~~~s~aP~~~ld~--lNDgfsD~kiD~t~D~se~~gs~~Eis~Rndrr~eS~~~esds~SSa~sv~l~dgsi 797 (1113)
T KOG0644|consen 720 SQDLADQSTCVSRAPNGGLDS--LNDGFSDVKIDLTLDCSEDSGSGEEISLRNDRRSESNPEESDSLSSAYSVWLADGSI 797 (1113)
T ss_pred hhhhhcccceeeeCCcccccc--cccccccccccchhhhhhcCCcccceeeecchhhccCcccccchhhhhheecccCCc
Confidence 1000 1222322222211111 11111111000011111110111223444444445555667788999999999 999
Q ss_pred CCCCCcccc-cccccC------------CCc--CCCC-CC--------CCCCCCCCCcCCCCccccccCCCC-CCCCCCC
Q psy9598 1122 NLEPPKRVR-RHTKVK------------PIQ--VSLP-KQ--------LIPEEVPDIYKPSDWLAEVVPKKA-PYYPQMG 1176 (1915)
Q Consensus 1122 ~~~~p~r~~-r~~~~~------------~~~--~~~~-~~--------~~~~~~~~~~~~~~w~~~~~~~~~-p~~pq~g 1176 (1915)
|++-.+|++ +|-..+ ++. .++. ++ ..+-..-+.+.+++||+.++-+.+ |||||||
T Consensus 798 ~~~tsrrgRi~k~~~st~a~Lt~e~~~~p~~~~~~s~s~s~~~~~p~~~~~~~~~~~~~~~sWltls~hee~~ryipQmg 877 (1113)
T KOG0644|consen 798 NLQTSRRGRITKFCSSTEAELTTELSSPPCSQDKGSGSKSHKRSTPAPLENMKPQQLFEKPSWLTLSIHEEGCRYIPQMG 877 (1113)
T ss_pred cccccccccccccCccchhhhhhcccCCCccccccccccCcccCCCccccccchhhhcCCceeEEeehhhcCCccccccc
Confidence 998332211 111100 000 0100 00 011112257899999999887666 9999999
Q ss_pred CeEEEEccchHHHHHHHhhcCccccCcccCCCCccCCCCCCceEEEEEEEEEecCCceEEEEEEEecCCCCcCCcEEEEE
Q psy9598 1177 DEVMFFKQGYQKYVDAVRSKGIYELSRLRSSPWGNLILQEPELVKVVGIKYEIAPPRMCCLKLAVMKPNGKLTNEFFNIK 1256 (1915)
Q Consensus 1177 d~v~yf~qGh~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~c~v~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~f~v~ 1256 (1915)
|+|+||+|||+|||+|++..++ ..+ ...||+++.+.-+++.|++.|.|..++|++||++|+++|..+.+..++|++.
T Consensus 878 DEViyfrQghqeyl~~~~~n~~-~~~--~~~p~~~~~v~~~kv~kl~~~~y~~~~~s~c~m~l~~idp~s~~~~k~F~lt 954 (1113)
T KOG0644|consen 878 DEVIYFRQGHQEYLEAVRLNNI-ELN--NKEPWNKMAVEICKVEKLVYITYPGSGDSCCKMKLAVIDPASKLMDKSFKLT 954 (1113)
T ss_pred ceeehhhhhhHHHHhhhhhccc-ccc--ccCcccccchhhheeeeeeeeeccCCCcchheeeeeeecchhhhhhccceee
Confidence 9999999999999999999887 555 5899999988888888888888888999999999999998779999999999
Q ss_pred eCCCCCCCcEEEehHhHHHHHcCCCCCCCeEEEEEcCe------eEEEEEeecCC----CCCCCceeeEEEeCCCCCCCc
Q psy9598 1257 YHDMPDVIDFFVLRQIYETAIAREWNVGDRFCSMIDDA------WWWGTIEGKPS----PTKSPFLGYKILWDNNERENL 1326 (1915)
Q Consensus 1257 y~~~~~~~~f~v~~~~y~~~~~~~~~~g~rf~~~~~~~------~~~G~i~~~~~----~~~s~w~~~~v~wd~~~~~~~ 1326 (1915)
|++|++++||||+|++|++|++|||+.||+||++|+|+ ||+|+|.+++| ||+|||+||.|+|||++.+.+
T Consensus 955 lpdlv~fpDFlV~rsrYd~AiQrnW~~~d~crvwwrda~~e~g~WWeG~ils~~pksp~fpdSpwery~v~~~~~e~~~~ 1034 (1113)
T KOG0644|consen 955 LPDLVTFPDFLVERSRYDAAIQRNWTCRDKCRVWWRDAGEEDGAWWEGRILSVKPKSPDFPDSPWERYIVRYDNTETELH 1034 (1113)
T ss_pred cccccCcchhhhhhhhHHHHHhhccccccceeEEEccCCCcCCceeeeeeeeccCCCCCCCCCcceeEEEEecCCccccc
Confidence 99999999999999999999999999999999999775 99999999998 999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCChHHHHhhccCCCCCCCCCCCCHHHHHHHHHHHHHhcCCCccCCCCCCCCCCCCCcc
Q psy9598 1327 SPWDLEPPKEGKEATEPGGSLPVEPEEIQELLYHPRPDEWPQGDRDATCEKIITGLEEVMGLSVAEPFLVPVDISQYPAY 1406 (1915)
Q Consensus 1327 spw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~F~~pv~~~~~p~Y 1406 (1915)
||||++||+.. |
T Consensus 1035 spwe~~~i~de--------------------------------------------------------------------~ 1046 (1113)
T KOG0644|consen 1035 SPWEMEPIPDE--------------------------------------------------------------------V 1046 (1113)
T ss_pred CccccCCCccc--------------------------------------------------------------------c
Confidence 99999998331 2
Q ss_pred ccccCCCCCHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHHHh
Q psy9598 1407 AYVVEYPVDLTTLRARFQNRFYRRITSAQFDVRYLAANAEKFNEPHSNIVKYARIITDLLLRIIK 1471 (1915)
Q Consensus 1407 ~~~I~~PmdL~tI~~rl~~~~Y~~~~~~~~D~~l~~~Na~~yN~~~s~i~~~a~~l~~~~~~~~~ 1471 (1915)
..-..-|..|..|+.||+|+|||++++|.+|+..|.+||.+|.+.+--+...+..|..+|.+.+.
T Consensus 1047 ~~~fpvpls~evi~~rlEn~yYrs~e~~~hdvs~mlsnae~~fg~~~~~~~ki~~l~~~~~~Tlp 1111 (1113)
T KOG0644|consen 1047 DNRFPVPLSLEVIRSRLENNYYRSQEALRHDVSVMLSNAETFFGRNKNVAIKISFLSPWFDRTLP 1111 (1113)
T ss_pred CCCCCCcccHHHHHHHHHhhhhhhhHhhhcchhhhhcccceeecccccHHHHhhhcchhhhhhcc
Confidence 22334488899999999999999999999999999999999999999888888888888877653
|
|
| >KOG0271|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-47 Score=421.71 Aligned_cols=333 Identities=28% Similarity=0.452 Sum_probs=295.3
Q ss_pred EEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCC
Q psy9598 470 YVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQT 549 (1915)
Q Consensus 470 ~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~t 549 (1915)
..+.||.++|.|+.|+|+|..||||+.|.++++||+.|..++++++||...|.|++|+|||..||||+.||+|++||..+
T Consensus 109 sS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpkt 188 (480)
T KOG0271|consen 109 SSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKT 188 (480)
T ss_pred cccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEE-EeecCCCCeEEEEeccCcc-CCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEEC
Q psy9598 550 LAPIS-VLVGHQGIITGVNFCPLEV-NGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFS 627 (1915)
Q Consensus 550 g~~~~-~l~~h~~~V~sl~fsp~~~-~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs 627 (1915)
|+++. .|.+|...|++++|.|... ...++|++++.||+|+|||+..+.++..+ .+|...|+|+.|-
T Consensus 189 g~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~l------------sgHT~~VTCvrwG 256 (480)
T KOG0271|consen 189 GQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTL------------SGHTASVTCVRWG 256 (480)
T ss_pred CCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEe------------ccCccceEEEEEc
Confidence 88764 7899999999999998542 24569999999999999999887654333 4678999999998
Q ss_pred CCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEc-----------CCC---------------------
Q psy9598 628 PGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWS-----------HSH--------------------- 675 (1915)
Q Consensus 628 pdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fs-----------pdg--------------------- 675 (1915)
-+| +|++|+.|++|++|+.. ....+..+.+|...|+.|+++ |.+
T Consensus 257 G~g-liySgS~DrtIkvw~a~---dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~ 332 (480)
T KOG0271|consen 257 GEG-LIYSGSQDRTIKVWRAL---DGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVL 332 (480)
T ss_pred CCc-eEEecCCCceEEEEEcc---chhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhh
Confidence 766 89999999999999983 356677899999999999887 223
Q ss_pred ----CEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEEC
Q psy9598 676 ----LRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDA 751 (1915)
Q Consensus 676 ----~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~ 751 (1915)
..|++|+.|+++.+|+..... .......+|..-|+.+.||||+++|++++- |..|++|+.
T Consensus 333 ~~~~erlVSgsDd~tlflW~p~~~k---------------kpi~rmtgHq~lVn~V~fSPd~r~IASaSF-DkSVkLW~g 396 (480)
T KOG0271|consen 333 KDSGERLVSGSDDFTLFLWNPFKSK---------------KPITRMTGHQALVNHVSFSPDGRYIASASF-DKSVKLWDG 396 (480)
T ss_pred ccCcceeEEecCCceEEEecccccc---------------cchhhhhchhhheeeEEECCCccEEEEeec-ccceeeeeC
Confidence 359999999999999754322 223345678999999999999999999998 999999999
Q ss_pred CCCceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEE
Q psy9598 752 FNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCAL 831 (1915)
Q Consensus 752 ~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Las 831 (1915)
.+|+.+.+|.||-+.|+.|+|+. |.++|++|+.|.+++||++.+.+. ...+. .|...|+++.|+|||..+++
T Consensus 397 ~tGk~lasfRGHv~~VYqvawsa-DsRLlVS~SkDsTLKvw~V~tkKl--~~DLp-----Gh~DEVf~vDwspDG~rV~s 468 (480)
T KOG0271|consen 397 RTGKFLASFRGHVAAVYQVAWSA-DSRLLVSGSKDSTLKVWDVRTKKL--KQDLP-----GHADEVFAVDWSPDGQRVAS 468 (480)
T ss_pred CCcchhhhhhhccceeEEEEecc-CccEEEEcCCCceEEEEEeeeeee--cccCC-----CCCceEEEEEecCCCceeec
Confidence 99999999999999999999999 999999999999999999998877 44443 56689999999999999999
Q ss_pred EeCCCeEEEEe
Q psy9598 832 TDSYGHLLVYG 842 (1915)
Q Consensus 832 g~~dG~I~Iwd 842 (1915)
|+.|..+++|.
T Consensus 469 ggkdkv~~lw~ 479 (480)
T KOG0271|consen 469 GGKDKVLRLWR 479 (480)
T ss_pred CCCceEEEeec
Confidence 99999999995
|
|
| >KOG0271|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=380.32 Aligned_cols=311 Identities=24% Similarity=0.380 Sum_probs=273.8
Q ss_pred cCccccccCCCeEEEecccCCceeeeEEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEE-EEEeCCCCCEE
Q psy9598 444 RSREYSGPLSRSLMISSHKYSNLRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLL-ATLRGCSGEIS 522 (1915)
Q Consensus 444 ~~r~~tg~~d~~~~i~~~~~~~~~~~~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~-~~l~gH~~~I~ 522 (1915)
..+.++|+.|.++++|+.... ..+++..||.+.|.||+|+|||..||+|+.||+|++||..+|+++ ..|.||...|+
T Consensus 127 g~~l~tGsGD~TvR~WD~~Te--Tp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It 204 (480)
T KOG0271|consen 127 GSRLVTGSGDTTVRLWDLDTE--TPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWIT 204 (480)
T ss_pred CceEEecCCCceEEeeccCCC--CcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCccccee
Confidence 357789999999999987655 355688999999999999999999999999999999999999765 57899999999
Q ss_pred EEEEeC-----CCCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCc
Q psy9598 523 DIAIDN-----RNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDI 597 (1915)
Q Consensus 523 ~Lafsp-----dg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~ 597 (1915)
+|+|.| ..++||++|.||+|+|||+..+.++..+.||+.+|+||.|- +..+|++||.|++|++|+...+.
T Consensus 205 ~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwG-----G~gliySgS~DrtIkvw~a~dG~ 279 (480)
T KOG0271|consen 205 ALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWG-----GEGLIYSGSQDRTIKVWRALDGK 279 (480)
T ss_pred EEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEc-----CCceEEecCCCceEEEEEccchh
Confidence 999965 57799999999999999999999999999999999999995 34799999999999999998876
Q ss_pred cccceeccCccccccccCCCCCceEEEEEC-----------CCCc-------------------------EEEEEeCCCe
Q psy9598 598 DISKTVFHEPVMFNERIRPGNAHILCSSFS-----------PGGL-------------------------FLATGSGDHH 641 (1915)
Q Consensus 598 ~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs-----------pdg~-------------------------~Lasgs~Dg~ 641 (1915)
+...+. +|...|+.++.+ |.|. .|++|+.|++
T Consensus 280 ~~r~lk------------GHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~t 347 (480)
T KOG0271|consen 280 LCRELK------------GHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFT 347 (480)
T ss_pred HHHhhc------------ccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCce
Confidence 554443 344455555444 3333 4999999999
Q ss_pred EEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCcccccccccc
Q psy9598 642 VRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKK 721 (1915)
Q Consensus 642 I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 721 (1915)
+.+|+.. .....+..+.+|..-|+.+.||||+.+++++|-|..|++|+.++++.+ ..+.+|-
T Consensus 348 lflW~p~--~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~l----------------asfRGHv 409 (480)
T KOG0271|consen 348 LFLWNPF--KSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFL----------------ASFRGHV 409 (480)
T ss_pred EEEeccc--ccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchh----------------hhhhhcc
Confidence 9999974 344566778999999999999999999999999999999999998833 2355688
Q ss_pred ccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEE
Q psy9598 722 IKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWD 793 (1915)
Q Consensus 722 ~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWd 793 (1915)
..|..++|+.|.++|++++. |.+++||++++.++..-|.||...|+++.|+| ||..+++||.|..+++|.
T Consensus 410 ~~VYqvawsaDsRLlVS~Sk-DsTLKvw~V~tkKl~~DLpGh~DEVf~vDwsp-DG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 410 AAVYQVAWSADSRLLVSGSK-DSTLKVWDVRTKKLKQDLPGHADEVFAVDWSP-DGQRVASGGKDKVLRLWR 479 (480)
T ss_pred ceeEEEEeccCccEEEEcCC-CceEEEEEeeeeeecccCCCCCceEEEEEecC-CCceeecCCCceEEEeec
Confidence 99999999999999999988 99999999999999999999999999999999 999999999999999994
|
|
| >KOG0272|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-39 Score=368.10 Aligned_cols=286 Identities=23% Similarity=0.422 Sum_probs=262.9
Q ss_pred EecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCC--CCEEEEEeCCCcEEEEECC
Q psy9598 471 VNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNR--NILLAAGTVDKTIRIWNLQ 548 (1915)
Q Consensus 471 ~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspd--g~~LaSgs~DgtIrVWDl~ 548 (1915)
.-.|-+.+|..+.||+++..|||||.+|.++||+..++..+.+|.||.+.|.++.|+|. +..||||+.||+|++|++.
T Consensus 170 SQ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~ 249 (459)
T KOG0272|consen 170 SQVGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLS 249 (459)
T ss_pred hhccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccC
Confidence 34477899999999999999999999999999999999999999999999999999997 6689999999999999999
Q ss_pred CCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECC
Q psy9598 549 TLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSP 628 (1915)
Q Consensus 549 tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fsp 628 (1915)
+..++..|.+|...|..++|+|+ |++|+|+|.|.+-++||+.++..+... .+|...|.+++|.+
T Consensus 250 ~e~~l~~l~gH~~RVs~VafHPs----G~~L~TasfD~tWRlWD~~tk~ElL~Q------------EGHs~~v~~iaf~~ 313 (459)
T KOG0272|consen 250 QETPLQDLEGHLARVSRVAFHPS----GKFLGTASFDSTWRLWDLETKSELLLQ------------EGHSKGVFSIAFQP 313 (459)
T ss_pred CCcchhhhhcchhhheeeeecCC----CceeeecccccchhhcccccchhhHhh------------cccccccceeEecC
Confidence 99999999999999999999995 599999999999999999998643322 36778999999999
Q ss_pred CCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccC
Q psy9598 629 GGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCL 708 (1915)
Q Consensus 629 dg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~ 708 (1915)
||.++++||.|..-+|||+ .+..++..+.+|...|.+|+|+|+|..|+|||.|++++|||++.....+
T Consensus 314 DGSL~~tGGlD~~~RvWDl---Rtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly--------- 381 (459)
T KOG0272|consen 314 DGSLAATGGLDSLGRVWDL---RTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELY--------- 381 (459)
T ss_pred CCceeeccCccchhheeec---ccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccce---------
Confidence 9999999999999999999 4567888999999999999999999999999999999999999776432
Q ss_pred CCCccccccccccccEEEEEECC-CCCEEEEEEecCCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEEecCc
Q psy9598 709 PHTKETSDETNKKIKVTMVAWDA-SDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDG 787 (1915)
Q Consensus 709 ~~~~~~~~~~~~~~~V~~va~sp-dg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG 787 (1915)
....|..-|+.|.|+| .|.+|++++. |++++||...++.++.++.||.+.|.++.+++ ++.+|+|++.|.
T Consensus 382 -------~ipAH~nlVS~Vk~~p~~g~fL~Tasy-D~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~-d~~~i~t~s~DR 452 (459)
T KOG0272|consen 382 -------TIPAHSNLVSQVKYSPQEGYFLVTASY-DNTVKIWSTRTWSPLKSLAGHEGKVISLDISP-DSQAIATSSFDR 452 (459)
T ss_pred -------ecccccchhhheEecccCCeEEEEccc-CcceeeecCCCcccchhhcCCccceEEEEecc-CCceEEEeccCc
Confidence 2345888999999998 6778888887 99999999999999999999999999999999 999999999999
Q ss_pred eEEEEE
Q psy9598 788 LIIIWD 793 (1915)
Q Consensus 788 ~I~IWd 793 (1915)
+|++|.
T Consensus 453 T~KLW~ 458 (459)
T KOG0272|consen 453 TIKLWR 458 (459)
T ss_pred eeeecc
Confidence 999995
|
|
| >KOG0273|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-37 Score=358.56 Aligned_cols=327 Identities=25% Similarity=0.411 Sum_probs=275.3
Q ss_pred EecCCCCcEEEEEEcCCCC-EEEEEECCCcEEEEECCC--CcE--EEEEe------CC----CCCEEEEEEeCCCCEEEE
Q psy9598 471 VNLGHLSAVFCVLFDKLGE-VIVTGADDLLIKLWRARD--GKL--LATLR------GC----SGEISDIAIDNRNILLAA 535 (1915)
Q Consensus 471 ~l~gH~~~V~~vafspdg~-~LaTGs~Dg~I~IWd~~t--g~~--~~~l~------gH----~~~I~~Lafspdg~~LaS 535 (1915)
++..|.+.|++++|+|-.. +|++|+.|.+.++|++.. ..+ ...|+ ++ ...|++|+|+.+|.+||+
T Consensus 173 kvl~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~Lat 252 (524)
T KOG0273|consen 173 KVLRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLAT 252 (524)
T ss_pred eeccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEE
Confidence 4445999999999999766 999999999999999874 111 11111 22 357999999999999999
Q ss_pred EeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccC
Q psy9598 536 GTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIR 615 (1915)
Q Consensus 536 gs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~ 615 (1915)
|+.||.++||+.. |..+.+|..|.++|.+|.|+- .+.+|++++-||++.+||..++.....+.++
T Consensus 253 G~~~G~~riw~~~-G~l~~tl~~HkgPI~slKWnk----~G~yilS~~vD~ttilwd~~~g~~~q~f~~~---------- 317 (524)
T KOG0273|consen 253 GSEDGEARIWNKD-GNLISTLGQHKGPIFSLKWNK----KGTYILSGGVDGTTILWDAHTGTVKQQFEFH---------- 317 (524)
T ss_pred eecCcEEEEEecC-chhhhhhhccCCceEEEEEcC----CCCEEEeccCCccEEEEeccCceEEEeeeec----------
Confidence 9999999999975 778889999999999999997 4599999999999999999988776666655
Q ss_pred CCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCC
Q psy9598 616 PGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCS 695 (1915)
Q Consensus 616 ~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~ 695 (1915)
......+.|-.+. .+++++.||.|+|+.+. ....+.++.+|.+.|.+|.|.|.|.+|+++|.|++++||.+...
T Consensus 318 --s~~~lDVdW~~~~-~F~ts~td~~i~V~kv~---~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~ 391 (524)
T KOG0273|consen 318 --SAPALDVDWQSND-EFATSSTDGCIHVCKVG---EDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQS 391 (524)
T ss_pred --cCCccceEEecCc-eEeecCCCceEEEEEec---CCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCC
Confidence 2233556665444 68899999999999993 33456678899999999999999999999999999999987655
Q ss_pred ceEEeeecccccCCCCccccccccccccEEEEEECCCC---------CEEEEEEecCCeEEEEECCCCceEEEeeCCCCC
Q psy9598 696 QWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASD---------RWVITAINFNFQIKIWDAFNGDLVQVLKGHTNE 766 (1915)
Q Consensus 696 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg---------~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~ 766 (1915)
.+. ..+..|...|..+.|+|.| ..|++++. |++|++||+..|.++++|..|..+
T Consensus 392 ~~~----------------~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~-dstV~lwdv~~gv~i~~f~kH~~p 454 (524)
T KOG0273|consen 392 NSV----------------HDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASF-DSTVKLWDVESGVPIHTLMKHQEP 454 (524)
T ss_pred cch----------------hhhhhhccceeeEeecCCCCccCCCcCCceEEEeec-CCeEEEEEccCCceeEeeccCCCc
Confidence 422 2344577889999999875 35666666 999999999999999999999999
Q ss_pred eEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q psy9598 767 VFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLG 844 (1915)
Q Consensus 767 V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl~ 844 (1915)
|++|+|+| ++.+||+|+.||.|.||++.+++. .+.+. +.+.|+.++|+.+|..|..+-+||.+.+.|+.
T Consensus 455 VysvafS~-~g~ylAsGs~dg~V~iws~~~~~l--~~s~~------~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 455 VYSVAFSP-NGRYLASGSLDGCVHIWSTKTGKL--VKSYQ------GTGGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred eEEEEecC-CCcEEEecCCCCeeEeccccchhe--eEeec------CCCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 99999999 999999999999999999999988 55554 66789999999999999999999999998863
|
|
| >KOG0286|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=331.02 Aligned_cols=292 Identities=22% Similarity=0.362 Sum_probs=265.8
Q ss_pred eeeeEEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEE
Q psy9598 466 LRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIW 545 (1915)
Q Consensus 466 ~~~~~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVW 545 (1915)
++..++|.||.+.|+|+.|++|.++|+++|.||.+.|||..|....+.+.-....|..++|+|.|+++|+|+.|+...||
T Consensus 45 ~~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy 124 (343)
T KOG0286|consen 45 MRTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIY 124 (343)
T ss_pred eeeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEE
Confidence 45568999999999999999999999999999999999999999999999899999999999999999999999999999
Q ss_pred ECCCC------ceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCC
Q psy9598 546 NLQTL------APISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNA 619 (1915)
Q Consensus 546 Dl~tg------~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (1915)
++.+. .....+.+|++.+.|+.|.++ ..|+++|.|.++.+||+.+++.+.. +.+|.+
T Consensus 125 ~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD-----~~ilT~SGD~TCalWDie~g~~~~~------------f~GH~g 187 (343)
T KOG0286|consen 125 PLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD-----NHILTGSGDMTCALWDIETGQQTQV------------FHGHTG 187 (343)
T ss_pred ecccccccccceeeeeecCccceeEEEEEcCC-----CceEecCCCceEEEEEcccceEEEE------------ecCCcc
Confidence 99854 345678899999999999874 6899999999999999999864332 347889
Q ss_pred ceEEEEECC-CCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceE
Q psy9598 620 HILCSSFSP-GGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWR 698 (1915)
Q Consensus 620 ~V~~l~fsp-dg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~ 698 (1915)
.|.+++++| +++.+++|+-|+..+|||++ ...++..+.+|...|++|+|.|+|.-|++|+.|+++++||++..+.+
T Consensus 188 DV~slsl~p~~~ntFvSg~cD~~aklWD~R---~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~ 264 (343)
T KOG0286|consen 188 DVMSLSLSPSDGNTFVSGGCDKSAKLWDVR---SGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQEL 264 (343)
T ss_pred cEEEEecCCCCCCeEEecccccceeeeecc---CcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEE
Confidence 999999999 99999999999999999994 45788899999999999999999999999999999999999988755
Q ss_pred EeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCC
Q psy9598 699 FIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSR 778 (1915)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~ 778 (1915)
.... ......+|++++||..|++|++|.. |.++.|||.-.++.+..|.||.+.|.+|..+| ||.
T Consensus 265 a~ys--------------~~~~~~gitSv~FS~SGRlLfagy~-d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~-DG~ 328 (343)
T KOG0286|consen 265 AVYS--------------HDSIICGITSVAFSKSGRLLFAGYD-DFTCNVWDTLKGERVGVLAGHENRVSCLGVSP-DGM 328 (343)
T ss_pred eeec--------------cCcccCCceeEEEcccccEEEeeec-CCceeEeeccccceEEEeeccCCeeEEEEECC-CCc
Confidence 4332 2234578999999999999999988 99999999999999999999999999999999 999
Q ss_pred EEEEEecCceEEEEE
Q psy9598 779 VLLSAGHDGLIIIWD 793 (1915)
Q Consensus 779 ~LaSgs~DG~I~IWd 793 (1915)
.|+||+.|.+|+||.
T Consensus 329 av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 329 AVATGSWDSTLRIWA 343 (343)
T ss_pred EEEecchhHheeecC
Confidence 999999999999994
|
|
| >KOG0291|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=357.27 Aligned_cols=409 Identities=21% Similarity=0.284 Sum_probs=330.2
Q ss_pred CccccccCCCeEEEecc------cCCceeeeEEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcE--EEEEeC
Q psy9598 445 SREYSGPLSRSLMISSH------KYSNLRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKL--LATLRG 516 (1915)
Q Consensus 445 ~r~~tg~~d~~~~i~~~------~~~~~~~~~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~--~~~l~g 516 (1915)
|+.+..+..+-+.+|.. .+..+.++++..||-..|++|.|+.|.++|++||.|.+++||++...+- ...+.|
T Consensus 108 g~~fav~~gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~g 187 (893)
T KOG0291|consen 108 GKFFAVGCGNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYALNG 187 (893)
T ss_pred CcEEEEEecceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccceEeccC
Confidence 44444455556666632 4778899999999999999999999999999999999999999977655 667899
Q ss_pred CCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCC-----------------------Cce-----------EEEeecCCCC
Q psy9598 517 CSGEISDIAIDNRNILLAAGTVDKTIRIWNLQT-----------------------LAP-----------ISVLVGHQGI 562 (1915)
Q Consensus 517 H~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~t-----------------------g~~-----------~~~l~~h~~~ 562 (1915)
|.+.|..+-|..+...|++.+.||.|.+|.+.. +.. .+-+......
T Consensus 188 Hkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~k 267 (893)
T KOG0291|consen 188 HKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSK 267 (893)
T ss_pred CCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccc
Confidence 999999999999999999999999999998761 111 1112223368
Q ss_pred eEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceecc-------------------------------Cccccc
Q psy9598 563 ITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFH-------------------------------EPVMFN 611 (1915)
Q Consensus 563 V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~-------------------------------~~~~~~ 611 (1915)
|++.+|++. .+.|++|-..|...+|.+..-..+..+... ....+.
T Consensus 268 vtaa~fH~~----t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYV 343 (893)
T KOG0291|consen 268 VTAAAFHKG----TNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYV 343 (893)
T ss_pred eeeeeccCC----ceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeecccee
Confidence 999999984 489999999999888887665443332221 011122
Q ss_pred cccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEE
Q psy9598 612 ERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWY 691 (1915)
Q Consensus 612 ~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWD 691 (1915)
-+..+|...++|++++|||.+||+|+.||.|+|||. ....|+.++..|++.|++++|+..|+.++++|.||+|+.||
T Consensus 344 lKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~---~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwD 420 (893)
T KOG0291|consen 344 LKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNT---QSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWD 420 (893)
T ss_pred eeccccccceeeEEECCCCcEEEeccCCCcEEEEec---cCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeee
Confidence 344578899999999999999999999999999998 56688999999999999999999999999999999999999
Q ss_pred ccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCCCeEEEE
Q psy9598 692 YKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLE 771 (1915)
Q Consensus 692 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~ 771 (1915)
+.......... ........|++.+|.|..+++|+...-.|+||++.+|+++-.|.||.++|.+++
T Consensus 421 lkRYrNfRTft---------------~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~ 485 (893)
T KOG0291|consen 421 LKRYRNFRTFT---------------SPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLS 485 (893)
T ss_pred ecccceeeeec---------------CCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeE
Confidence 98776544321 123456789999999999999887556899999999999999999999999999
Q ss_pred EccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccccc
Q psy9598 772 SHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGGFKRPQN 851 (1915)
Q Consensus 772 ~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl~s~~~~~~ 851 (1915)
|+| .+..|+||++|.+|++||+-.... ...++. ....+.+++|+|||.-||+++.||.|.+||...+.....
T Consensus 486 f~~-~~~~LaS~SWDkTVRiW~if~s~~-~vEtl~------i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~ 557 (893)
T KOG0291|consen 486 FSP-DGSLLASGSWDKTVRIWDIFSSSG-TVETLE------IRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGS 557 (893)
T ss_pred Ecc-ccCeEEeccccceEEEEEeeccCc-eeeeEe------eccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeecc
Confidence 999 999999999999999999976532 022232 446789999999999999999999999999886655433
Q ss_pred CCC--------------------------ceeecCCCCeeeec-CCCccceeecccCCC
Q psy9598 852 IPR--------------------------ELFFHTDYRTLNRP-NGLFEPTYDEVTNLP 883 (1915)
Q Consensus 852 l~~--------------------------~~~F~~d~~~Lv~~-~~~~~~v~D~~t~~~ 883 (1915)
|-+ .+.++.||..++.+ ...++.+||+.++..
T Consensus 558 IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vl 616 (893)
T KOG0291|consen 558 IDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVL 616 (893)
T ss_pred ccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhhe
Confidence 321 57899999988744 456688999877743
|
|
| >KOG0272|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-37 Score=352.30 Aligned_cols=286 Identities=21% Similarity=0.330 Sum_probs=261.4
Q ss_pred CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEeccc
Q psy9598 516 GCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKL 595 (1915)
Q Consensus 516 gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~ 595 (1915)
|-+.+|..+.|+.++..|||||.+|.++||+..++..+.+|.||...|.++.|+|.. ++..|++|+.||+|++|++.+
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~--~~~~lat~s~Dgtvklw~~~~ 250 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVD--SDLNLATASADGTVKLWKLSQ 250 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCC--CccceeeeccCCceeeeccCC
Confidence 456789999999999999999999999999999999999999999999999999953 457999999999999999987
Q ss_pred CccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCC
Q psy9598 596 DIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSH 675 (1915)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg 675 (1915)
...+..+ .+|...|..++|+|+|++|++++.|.+-++||+. +...+....||...|.+|+|+++|
T Consensus 251 e~~l~~l------------~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~---tk~ElL~QEGHs~~v~~iaf~~DG 315 (459)
T KOG0272|consen 251 ETPLQDL------------EGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLE---TKSELLLQEGHSKGVFSIAFQPDG 315 (459)
T ss_pred Ccchhhh------------hcchhhheeeeecCCCceeeecccccchhhcccc---cchhhHhhcccccccceeEecCCC
Confidence 6544333 3566889999999999999999999999999994 445566678999999999999999
Q ss_pred CEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCc
Q psy9598 676 LRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGD 755 (1915)
Q Consensus 676 ~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~ 755 (1915)
.+++||+.|..-+|||++++.++.+ ..+|...|..|+|+|+|..|++|++ |++++|||++...
T Consensus 316 SL~~tGGlD~~~RvWDlRtgr~im~----------------L~gH~k~I~~V~fsPNGy~lATgs~-Dnt~kVWDLR~r~ 378 (459)
T KOG0272|consen 316 SLAATGGLDSLGRVWDLRTGRCIMF----------------LAGHIKEILSVAFSPNGYHLATGSS-DNTCKVWDLRMRS 378 (459)
T ss_pred ceeeccCccchhheeecccCcEEEE----------------ecccccceeeEeECCCceEEeecCC-CCcEEEeeecccc
Confidence 9999999999999999999987653 3458899999999999999999999 9999999999999
Q ss_pred eEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEEeCC
Q psy9598 756 LVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSY 835 (1915)
Q Consensus 756 ~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~d 835 (1915)
++.++.+|.+-|+.|.|+|..|.+|+|+|.|++++||...+..+ +..+. +|.+.|.++.+++||.+|++++.|
T Consensus 379 ~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~--~ksLa-----GHe~kV~s~Dis~d~~~i~t~s~D 451 (459)
T KOG0272|consen 379 ELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSP--LKSLA-----GHEGKVISLDISPDSQAIATSSFD 451 (459)
T ss_pred cceecccccchhhheEecccCCeEEEEcccCcceeeecCCCccc--chhhc-----CCccceEEEEeccCCceEEEeccC
Confidence 99999999999999999998899999999999999999999988 77766 678999999999999999999999
Q ss_pred CeEEEEe
Q psy9598 836 GHLLVYG 842 (1915)
Q Consensus 836 G~I~Iwd 842 (1915)
.+|++|.
T Consensus 452 RT~KLW~ 458 (459)
T KOG0272|consen 452 RTIKLWR 458 (459)
T ss_pred ceeeecc
Confidence 9999995
|
|
| >KOG0319|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=365.50 Aligned_cols=387 Identities=22% Similarity=0.307 Sum_probs=312.2
Q ss_pred ccccccCCCeEEEecccCCceeeeEEecC-CCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEE
Q psy9598 446 REYSGPLSRSLMISSHKYSNLRQHYVNLG-HLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDI 524 (1915)
Q Consensus 446 r~~tg~~d~~~~i~~~~~~~~~~~~~l~g-H~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~L 524 (1915)
..++.+..+-+.+|..... ++++.+.+ |.++|.-++|+|.|.+|++|+.||.|+|||+..+.+.+.|+||.+.|.++
T Consensus 76 ~L~~a~rs~llrv~~L~tg--k~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl 153 (775)
T KOG0319|consen 76 VLVTASRSQLLRVWSLPTG--KLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSL 153 (775)
T ss_pred EEEEeeccceEEEEEcccc--hHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEE
Confidence 3444555556667755444 66677777 99999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCC--EEEEEeCCCcEEEEECCCCc-eEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEec--------
Q psy9598 525 AIDNRNI--LLAAGTVDKTIRIWNLQTLA-PISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKY-------- 593 (1915)
Q Consensus 525 afspdg~--~LaSgs~DgtIrVWDl~tg~-~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl-------- 593 (1915)
.|+|+-. +|++|..|++|++||+.+.. +++++..|...|++++|.+++ ..++++|.|..|.+||+
T Consensus 154 ~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~----~~~ls~~RDkvi~vwd~~~~~~l~~ 229 (775)
T KOG0319|consen 154 LFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDS----LELLSVGRDKVIIVWDLVQYKKLKT 229 (775)
T ss_pred EeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCC----ceEEEeccCcEEEEeehhhhhhhhe
Confidence 9999754 68999999999999999655 488889999999999999854 56666666666666665
Q ss_pred --------------------------------------ccCccccceecc------------------------------
Q psy9598 594 --------------------------------------KLDIDISKTVFH------------------------------ 605 (1915)
Q Consensus 594 --------------------------------------~~~~~~~~~~~~------------------------------ 605 (1915)
.++.+.......
T Consensus 230 lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d 309 (775)
T KOG0319|consen 230 LPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYD 309 (775)
T ss_pred echhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEE
Confidence 222111000000
Q ss_pred -------------------------------------------CccccccccCCCCCceEEEEECCCCcEEEEEeCCCeE
Q psy9598 606 -------------------------------------------EPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHV 642 (1915)
Q Consensus 606 -------------------------------------------~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I 642 (1915)
.+......+.+|...|.++....+|.+|++|+.|.++
T Consensus 310 ~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~sv 389 (775)
T KOG0319|consen 310 EDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSV 389 (775)
T ss_pred ccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceE
Confidence 0000001234677778888866778899999999999
Q ss_pred EEEEecC-CCCCceeEEeccCCCCeeEEEEcCCC-CEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccc
Q psy9598 643 RVYKMDG-VDSPLGILEVEEHSDKVDSIQWSHSH-LRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNK 720 (1915)
Q Consensus 643 ~IwDl~~-~~~~~~i~~l~~h~~~V~sl~fspdg-~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 720 (1915)
++|.++. .....++....+|++.|.+|+++..+ .+|+++|.|++|++|++...+.. ..............|
T Consensus 390 ilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~-------~~~~~~~~~~t~~aH 462 (775)
T KOG0319|consen 390 ILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKET-------AFPIVLTCRYTERAH 462 (775)
T ss_pred EEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccc-------cccceehhhHHHHhh
Confidence 9998832 23445566678999999999997765 48999999999999998763211 011111122345568
Q ss_pred cccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccc
Q psy9598 721 KIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQR 800 (1915)
Q Consensus 721 ~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~ 800 (1915)
...|++|+++|++..|++|+. |.+.+||++..+.++.+|.||...|++|.|+| ...+|+|+|.|++|+||.+.+..+
T Consensus 463 dKdIN~Vaia~ndkLiAT~Sq-DktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~-~dq~laT~SgD~TvKIW~is~fSC- 539 (775)
T KOG0319|consen 463 DKDINCVAIAPNDKLIATGSQ-DKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSK-NDQLLATCSGDKTVKIWSISTFSC- 539 (775)
T ss_pred cccccceEecCCCceEEeccc-ccceeeecccCceEEEEeeCCccceEEEEecc-ccceeEeccCCceEEEEEecccee-
Confidence 899999999999999999998 99999999999999999999999999999999 888999999999999999999999
Q ss_pred cceeeeeeecCCCCcceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcccccCCC
Q psy9598 801 GYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGGFKRPQNIPR 854 (1915)
Q Consensus 801 ~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl~s~~~~~~l~~ 854 (1915)
+.+|. +|..+|..+.|-.+|..|++++.||.|+||++.++.|..++-.
T Consensus 540 -lkT~e-----GH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~ 587 (775)
T KOG0319|consen 540 -LKTFE-----GHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDA 587 (775)
T ss_pred -eeeec-----CccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhh
Confidence 88887 6779999999999999999999999999999999999988865
|
|
| >KOG0319|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-34 Score=341.87 Aligned_cols=378 Identities=17% Similarity=0.263 Sum_probs=302.4
Q ss_pred cCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeC-CCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCc
Q psy9598 473 LGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRG-CSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLA 551 (1915)
Q Consensus 473 ~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~g-H~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~ 551 (1915)
......|++++++||+.+|++++..+.+++|++.+|+++..+++ |.++|.-++|+|.|.+|++|+.|+.|+|||+..+.
T Consensus 59 ~ed~d~ita~~l~~d~~~L~~a~rs~llrv~~L~tgk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~ 138 (775)
T KOG0319|consen 59 NEDEDEITALALTPDEEVLVTASRSQLLRVWSLPTGKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGY 138 (775)
T ss_pred ccchhhhheeeecCCccEEEEeeccceEEEEEcccchHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCE
Confidence 45667899999999999999999999999999999999999988 99999999999999999999999999999999999
Q ss_pred eEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCc
Q psy9598 552 PISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGL 631 (1915)
Q Consensus 552 ~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~ 631 (1915)
+.+.|.||.+.|.++.|+|.. ....|++|..|++|++||+.+... .......|.+.|++++|++++.
T Consensus 139 ~th~fkG~gGvVssl~F~~~~--~~~lL~sg~~D~~v~vwnl~~~~t-----------cl~~~~~H~S~vtsL~~~~d~~ 205 (775)
T KOG0319|consen 139 CTHSFKGHGGVVSSLLFHPHW--NRWLLASGATDGTVRVWNLNDKRT-----------CLHTMILHKSAVTSLAFSEDSL 205 (775)
T ss_pred EEEEecCCCceEEEEEeCCcc--chhheeecCCCceEEEEEcccCch-----------HHHHHHhhhhheeeeeeccCCc
Confidence 999999999999999999976 457899999999999999986543 1112223455566666666665
Q ss_pred EEEEEeCCCeEEEEEec----------------------------------------------CC---------------
Q psy9598 632 FLATGSGDHHVRVYKMD----------------------------------------------GV--------------- 650 (1915)
Q Consensus 632 ~Lasgs~Dg~I~IwDl~----------------------------------------------~~--------------- 650 (1915)
.++++|.|..|.|||+. +.
T Consensus 206 ~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~ 285 (775)
T KOG0319|consen 206 ELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEID 285 (775)
T ss_pred eEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhh
Confidence 55555555555555542 00
Q ss_pred --------------------------------------------------------------------CCCceeEEeccC
Q psy9598 651 --------------------------------------------------------------------DSPLGILEVEEH 662 (1915)
Q Consensus 651 --------------------------------------------------------------------~~~~~i~~l~~h 662 (1915)
.... ...+.||
T Consensus 286 ~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~-c~ii~GH 364 (775)
T KOG0319|consen 286 HLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSY-CQIIPGH 364 (775)
T ss_pred cceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCc-eEEEeCc
Confidence 0000 1134578
Q ss_pred CCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCC-EEEEEEe
Q psy9598 663 SDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDR-WVITAIN 741 (1915)
Q Consensus 663 ~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~-~L~t~s~ 741 (1915)
...|.++....+|.+|+|||.|.++++|.+..+.... .......+|.+.|.+|+++..+. ++++++.
T Consensus 365 ~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~------------~~~a~~~gH~~svgava~~~~~asffvsvS~ 432 (775)
T KOG0319|consen 365 TEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKS------------LCVAQANGHTNSVGAVAGSKLGASFFVSVSQ 432 (775)
T ss_pred hhheeeeeecccCcEEEEecCCceEEEEEecCCcchh------------hhhhhhcccccccceeeecccCccEEEEecC
Confidence 8888898866678899999999999999885443211 12234567899999999987765 4555555
Q ss_pred cCCeEEEEECCCCc-----eE----EEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCC
Q psy9598 742 FNFQIKIWDAFNGD-----LV----QVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQ 812 (1915)
Q Consensus 742 ~Dg~I~vwD~~tg~-----~i----~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~ 812 (1915)
|++|++|++...+ .+ .+...|...|++|+++| +..+|||||.|.+.+||++..... ..++. .
T Consensus 433 -D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~-ndkLiAT~SqDktaKiW~le~~~l--~~vLs-----G 503 (775)
T KOG0319|consen 433 -DCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAP-NDKLIATGSQDKTAKIWDLEQLRL--LGVLS-----G 503 (775)
T ss_pred -CceEEEecCCCcccccccceehhhHHHHhhcccccceEecC-CCceEEecccccceeeecccCceE--EEEee-----C
Confidence 9999999987521 11 13458999999999999 889999999999999999996655 55544 5
Q ss_pred CCcceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcccccCCC------ceeecCCCCeee-ecCCCccceeecccCCCCC
Q psy9598 813 GEGALFDGKWSPDGTTCALTDSYGHLLVYGLGGFKRPQNIPR------ELFFHTDYRTLN-RPNGLFEPTYDEVTNLPPH 885 (1915)
Q Consensus 813 ~~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl~s~~~~~~l~~------~~~F~~d~~~Lv-~~~~~~~~v~D~~t~~~p~ 885 (1915)
|...|+++.|++..+.+|+++.|++|+||.+.++.|++++.+ ...|-.++..|+ .++.+.+.+|++.|..+..
T Consensus 504 H~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~ 583 (775)
T KOG0319|consen 504 HTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEM 583 (775)
T ss_pred CccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhh
Confidence 778899999999999999999999999999999999999986 356777777777 5566778999999986643
|
|
| >KOG0318|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-32 Score=317.69 Aligned_cols=422 Identities=19% Similarity=0.266 Sum_probs=327.7
Q ss_pred eeeEEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCc--EEEEEeCCCCCEEEEEEeCCCCEEEEEeC--CCcE
Q psy9598 467 RQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGK--LLATLRGCSGEISDIAIDNRNILLAAGTV--DKTI 542 (1915)
Q Consensus 467 ~~~~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~--~~~~l~gH~~~I~~Lafspdg~~LaSgs~--DgtI 542 (1915)
.....+.+|...|+-..|||.|-|||+|...|+|+|||..... +...++.-.++|.+|+|+.+++.|++.+. +...
T Consensus 50 ~~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg 129 (603)
T KOG0318|consen 50 ASVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFG 129 (603)
T ss_pred cceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCcccee
Confidence 3355778999999999999999999999999999999986532 34467778899999999999999988764 3334
Q ss_pred EEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceE
Q psy9598 543 RIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHIL 622 (1915)
Q Consensus 543 rVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~ 622 (1915)
+++-..+|..+..+.||...|+++.|-|..+ ..+++|+.|++|-||+- .|..|...++.|...|.
T Consensus 130 ~~F~~DSG~SvGei~GhSr~ins~~~KpsRP---fRi~T~sdDn~v~ffeG------------PPFKFk~s~r~HskFV~ 194 (603)
T KOG0318|consen 130 HVFLWDSGNSVGEITGHSRRINSVDFKPSRP---FRIATGSDDNTVAFFEG------------PPFKFKSSFREHSKFVN 194 (603)
T ss_pred EEEEecCCCccceeeccceeEeeeeccCCCc---eEEEeccCCCeEEEeeC------------CCeeeeeccccccccee
Confidence 4444457888999999999999999999654 89999999999999862 35556677778889999
Q ss_pred EEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEec---cCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEE
Q psy9598 623 CSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVE---EHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRF 699 (1915)
Q Consensus 623 ~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~---~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~ 699 (1915)
|+.|+|||.++++.+.||.|.|||- .....+..+. +|.+.|.+|+|+||+..|+++|.|.+++|||+.+..+..
T Consensus 195 ~VRysPDG~~Fat~gsDgki~iyDG---ktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~ 271 (603)
T KOG0318|consen 195 CVRYSPDGSRFATAGSDGKIYIYDG---KTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVS 271 (603)
T ss_pred eEEECCCCCeEEEecCCccEEEEcC---CCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEE
Confidence 9999999999999999999999997 4455566665 899999999999999999999999999999999877544
Q ss_pred eeecccc---------------------------cCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECC
Q psy9598 700 IRLDMNT---------------------------CLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAF 752 (1915)
Q Consensus 700 ~~~~~~~---------------------------~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~ 752 (1915)
...-... ............+|...|++++.++++.+|++|+. ||.|.-|+..
T Consensus 272 t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~Sgsy-DG~I~~W~~~ 350 (603)
T KOG0318|consen 272 TWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSY-DGHINSWDSG 350 (603)
T ss_pred EeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeecc-CceEEEEecC
Confidence 3211111 00111233456789999999999999999999999 9999999999
Q ss_pred CCceEEEe-eCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCcc------------ccceeeee------------
Q psy9598 753 NGDLVQVL-KGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQ------------RGYKWFHN------------ 807 (1915)
Q Consensus 753 tg~~i~~l-~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~------------~~~~~~~~------------ 807 (1915)
+|..-... .+|...|.+++.+. ...|+|+|.|.+|++.++..+.. .++.....
T Consensus 351 ~g~~~~~~g~~h~nqI~~~~~~~--~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~i 428 (603)
T KOG0318|consen 351 SGTSDRLAGKGHTNQIKGMAASE--SGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDI 428 (603)
T ss_pred CccccccccccccceEEEEeecC--CCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcE
Confidence 88766554 68999999998864 45688999999999998743211 00110000
Q ss_pred -eecCC-------CCcceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccccc--------CCCceeecCCCCeee-ecCC
Q psy9598 808 -IVEGQ-------GEGALFDGKWSPDGTTCALTDSYGHLLVYGLGGFKRPQN--------IPRELFFHTDYRTLN-RPNG 870 (1915)
Q Consensus 808 -~~~~~-------~~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl~s~~~~~~--------l~~~~~F~~d~~~Lv-~~~~ 870 (1915)
++..+ -.-...+++++|++..+|+|+.||.|+||.+........ -+..+.|++|+..|+ .+..
T Consensus 429 v~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~ 508 (603)
T KOG0318|consen 429 VLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDAS 508 (603)
T ss_pred EEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccC
Confidence 00000 012456789999999999999999999999997654322 123789999999998 5566
Q ss_pred CccceeecccCCCCCcCCCCcccC-CCCCCCCCCCcccccC
Q psy9598 871 LFEPTYDEVTNLPPHLMPPPFLVD-LNGTPYPPEVQRLVPG 910 (1915)
Q Consensus 871 ~~~~v~D~~t~~~p~~~~~pfl~~-~~G~~ypp~~Q~lv~G 910 (1915)
.-+-+||+++... +...-.|-.. ++...++|+.+++++|
T Consensus 509 rkvv~yd~~s~~~-~~~~w~FHtakI~~~aWsP~n~~vATG 548 (603)
T KOG0318|consen 509 RKVVLYDVASREV-KTNRWAFHTAKINCVAWSPNNKLVATG 548 (603)
T ss_pred CcEEEEEcccCce-ecceeeeeeeeEEEEEeCCCceEEEec
Confidence 6677999998766 3222233333 7788899999988876
|
|
| >KOG0279|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=305.54 Aligned_cols=293 Identities=23% Similarity=0.332 Sum_probs=251.7
Q ss_pred ceeeeEEecCCCCcEEEEEEcCC-CCEEEEEECCCcEEEEECC-----CCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeC
Q psy9598 465 NLRQHYVNLGHLSAVFCVLFDKL-GEVIVTGADDLLIKLWRAR-----DGKLLATLRGCSGEISDIAIDNRNILLAAGTV 538 (1915)
Q Consensus 465 ~~~~~~~l~gH~~~V~~vafspd-g~~LaTGs~Dg~I~IWd~~-----tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~ 538 (1915)
.+.++-+|.||++.|+.++..+. -..|++++.|.+|.+|++. .|..++.|.||...|..++.++||++.++++.
T Consensus 4 ~l~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~sw 83 (315)
T KOG0279|consen 4 QLVLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASW 83 (315)
T ss_pred hheeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccc
Confidence 34566789999999999999876 5788999999999999875 47789999999999999999999999999999
Q ss_pred CCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCC
Q psy9598 539 DKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGN 618 (1915)
Q Consensus 539 DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~ 618 (1915)
|+++++||+.+|+....|.||...|.+++|+++ ...+++||.|.+|++|++.+... .... -..+.
T Consensus 84 D~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~d----n~qivSGSrDkTiklwnt~g~ck---~t~~--------~~~~~ 148 (315)
T KOG0279|consen 84 DGTLRLWDLATGESTRRFVGHTKDVLSVAFSTD----NRQIVSGSRDKTIKLWNTLGVCK---YTIH--------EDSHR 148 (315)
T ss_pred cceEEEEEecCCcEEEEEEecCCceEEEEecCC----CceeecCCCcceeeeeeecccEE---EEEe--------cCCCc
Confidence 999999999999999999999999999999994 48999999999999999876532 1111 01225
Q ss_pred CceEEEEECCC--CcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCc
Q psy9598 619 AHILCSSFSPG--GLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQ 696 (1915)
Q Consensus 619 ~~V~~l~fspd--g~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~ 696 (1915)
..|.|+.|+|+ ..+|++++.|++|++||++ .......+.+|++.|+.+++||||..+++|+.||.+.+||++.++
T Consensus 149 ~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~---~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k 225 (315)
T KOG0279|consen 149 EWVSCVRFSPNESNPIIVSASWDKTVKVWNLR---NCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGK 225 (315)
T ss_pred CcEEEEEEcCCCCCcEEEEccCCceEEEEccC---CcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCc
Confidence 88999999998 6799999999999999994 445556788999999999999999999999999999999999888
Q ss_pred eEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeC----C-----CCCe
Q psy9598 697 WRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKG----H-----TNEV 767 (1915)
Q Consensus 697 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~g----H-----~~~V 767 (1915)
..+. ..+...|.+++|+|+.-.|+++. +..|+|||+.++.++..+.. . .-..
T Consensus 226 ~lys-----------------l~a~~~v~sl~fspnrywL~~at--~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~c 286 (315)
T KOG0279|consen 226 NLYS-----------------LEAFDIVNSLCFSPNRYWLCAAT--ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPIC 286 (315)
T ss_pred eeEe-----------------ccCCCeEeeEEecCCceeEeecc--CCceEEEeccchhhhhhccccccccccccCCcEE
Confidence 6442 24677899999999887776665 56799999999988877652 2 2245
Q ss_pred EEEEEccCCCCEEEEEecCceEEEEECC
Q psy9598 768 FVLESHPFDSRVLLSAGHDGLIIIWDIL 795 (1915)
Q Consensus 768 ~sl~~sp~dg~~LaSgs~DG~I~IWdl~ 795 (1915)
.+++|++ +|..|++|-.|+.|++|.+.
T Consensus 287 lslaws~-dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 287 LSLAWSA-DGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred EEEEEcC-CCcEEEeeecCCcEEEEEee
Confidence 7788999 99999999999999999875
|
|
| >KOG0318|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-32 Score=315.72 Aligned_cols=403 Identities=16% Similarity=0.203 Sum_probs=312.6
Q ss_pred CccccccCCCeEEEecccCCceeeeEEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEe---CCCCCE
Q psy9598 445 SREYSGPLSRSLMISSHKYSNLRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLR---GCSGEI 521 (1915)
Q Consensus 445 ~r~~tg~~d~~~~i~~~~~~~~~~~~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~---gH~~~I 521 (1915)
-|.++|+-|+++.+.. ...++...++..|..-|+||.|+|||.++||++.||+|.|||-.+|+.+..|. +|.+.|
T Consensus 161 fRi~T~sdDn~v~ffe--GPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsI 238 (603)
T KOG0318|consen 161 FRIATGSDDNTVAFFE--GPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSI 238 (603)
T ss_pred eEEEeccCCCeEEEee--CCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccE
Confidence 4677899999998863 46777888999999999999999999999999999999999999999999998 999999
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCC---CCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCcc
Q psy9598 522 SDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQ---GIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDID 598 (1915)
Q Consensus 522 ~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~---~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~ 598 (1915)
.+|+|+||++.|+++|.|.+++|||+.+.+++.++.... +.-..+.|.. ..|++.+.+|+|.+++...+..
T Consensus 239 falsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqk------d~lItVSl~G~in~ln~~d~~~ 312 (603)
T KOG0318|consen 239 FALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQK------DHLITVSLSGTINYLNPSDPSV 312 (603)
T ss_pred EEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeC------CeEEEEEcCcEEEEecccCCCh
Confidence 999999999999999999999999999999998886433 2334455543 7899999999999999877642
Q ss_pred ccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEE
Q psy9598 599 ISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRF 678 (1915)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L 678 (1915)
+ ..+.+|...|++++.++++.+|++|+.||.|.-|+........ ..-.+|...|.+++.+..+ .+
T Consensus 313 ~------------~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~--~~g~~h~nqI~~~~~~~~~-~~ 377 (603)
T KOG0318|consen 313 L------------KVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDR--LAGKGHTNQIKGMAASESG-EL 377 (603)
T ss_pred h------------heecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccc--cccccccceEEEEeecCCC-cE
Confidence 2 2344778999999999999999999999999999994332211 1126799999999987544 57
Q ss_pred EEEeCCCcEEEEEccCCceEEee---eccc---------------ccCCCCccc-----cccccccccEEEEEECCCCCE
Q psy9598 679 VSGSRDGTALIWYYKCSQWRFIR---LDMN---------------TCLPHTKET-----SDETNKKIKVTMVAWDASDRW 735 (1915)
Q Consensus 679 ~sgs~DG~I~IWDl~~~~~~~~~---~~~~---------------~~~~~~~~~-----~~~~~~~~~V~~va~spdg~~ 735 (1915)
++++.|.++++.++......... +... .+....... ...........+++++|++..
T Consensus 378 ~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~ 457 (603)
T KOG0318|consen 378 FTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSE 457 (603)
T ss_pred EEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCE
Confidence 88899999999987543321110 0000 000000000 011123455678999999999
Q ss_pred EEEEEecCCeEEEEECCCCce--EEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCC
Q psy9598 736 VITAINFNFQIKIWDAFNGDL--VQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQG 813 (1915)
Q Consensus 736 L~t~s~~Dg~I~vwD~~tg~~--i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~ 813 (1915)
+++|+. ||.|+||.+..+.+ ...+..|.++|++|+++| ++.+||+|...+.|.+||+.+......... -|
T Consensus 458 vaVGG~-Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySp-d~~yla~~Da~rkvv~yd~~s~~~~~~~w~------FH 529 (603)
T KOG0318|consen 458 VAVGGQ-DGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSP-DGAYLAAGDASRKVVLYDVASREVKTNRWA------FH 529 (603)
T ss_pred EEEecc-cceEEEEEecCCcccceeeeecccCCceEEEECC-CCcEEEEeccCCcEEEEEcccCceecceee------ee
Confidence 999999 99999999987553 335668999999999999 999999999999999999998876222222 36
Q ss_pred CcceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcccccCCC-------ceeecCCCCeeeecCCCccceeec
Q psy9598 814 EGALFDGKWSPDGTTCALTDSYGHLLVYGLGGFKRPQNIPR-------ELFFHTDYRTLNRPNGLFEPTYDE 878 (1915)
Q Consensus 814 ~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl~s~~~~~~l~~-------~~~F~~d~~~Lv~~~~~~~~v~D~ 878 (1915)
.+.|.+++|+|+..+||+|+-|-.|.||++......-.+.. .+.|..+...+.....-.+.+|.+
T Consensus 530 takI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~iknAH~~gVn~v~wlde~tvvSsG~Da~iK~W~v 601 (603)
T KOG0318|consen 530 TAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGVNSVAWLDESTVVSSGQDANIKVWNV 601 (603)
T ss_pred eeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEeccccccCceeEEEecCceEEeccCcceeEEecc
Confidence 78999999999999999999999999999986544433322 455655555554444444556654
|
|
| >KOG0306|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-33 Score=332.35 Aligned_cols=408 Identities=19% Similarity=0.249 Sum_probs=322.7
Q ss_pred ccccCCCeEEEecccCCceeeeEEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEe
Q psy9598 448 YSGPLSRSLMISSHKYSNLRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAID 527 (1915)
Q Consensus 448 ~tg~~d~~~~i~~~~~~~~~~~~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafs 527 (1915)
+.|..||.+.+|..... ....++.||..+|+++.|+..|.+||+||.|+.|.|||+-...-+..+.||...|+.+-|.
T Consensus 81 AVGYaDGsVqif~~~s~--~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~ 158 (888)
T KOG0306|consen 81 AVGYADGSVQIFSLESE--EILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFL 158 (888)
T ss_pred EEEecCceEEeeccCCC--ceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEeecchHHHhHHhcc
Confidence 45888999999976544 5566899999999999999999999999999999999999888899999999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCc----------
Q psy9598 528 NRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDI---------- 597 (1915)
Q Consensus 528 pdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~---------- 597 (1915)
.+.++|+|.|.|+.|++||+.+..|..+...|.+.|+++++.+ ..+++++.|+.+++|++....
T Consensus 159 ~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~------~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s 232 (888)
T KOG0306|consen 159 NGDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDE------KLLVTAGTDSELKVWELAFEDDEKETNRYIS 232 (888)
T ss_pred CCCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEec------ceEEEEecCCceEEEEeecccccccccccce
Confidence 9889999999999999999999999999999999999999987 789999999999999981100
Q ss_pred --------------ccc-----------------------------------c---------------------------
Q psy9598 598 --------------DIS-----------------------------------K--------------------------- 601 (1915)
Q Consensus 598 --------------~~~-----------------------------------~--------------------------- 601 (1915)
.+. .
T Consensus 233 ~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~ 312 (888)
T KOG0306|consen 233 TKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIK 312 (888)
T ss_pred eeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHH
Confidence 000 0
Q ss_pred ----ee-------c------cCc-----------------c-c---------cccccCCCCCceEEEEECCCCcEEEEEe
Q psy9598 602 ----TV-------F------HEP-----------------V-M---------FNERIRPGNAHILCSSFSPGGLFLATGS 637 (1915)
Q Consensus 602 ----~~-------~------~~~-----------------~-~---------~~~~~~~~~~~V~~l~fspdg~~Lasgs 637 (1915)
+. + ... . . ....+.+|...|.+++||.+...+++|+
T Consensus 313 r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga 392 (888)
T KOG0306|consen 313 RLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGA 392 (888)
T ss_pred HHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecC
Confidence 00 0 000 0 0 0011234556666677766665555543
Q ss_pred CCCeEEEEEecCC-------------------------------------CCCceeEEeccCCCCeeEEEEcCCCCEEEE
Q psy9598 638 GDHHVRVYKMDGV-------------------------------------DSPLGILEVEEHSDKVDSIQWSHSHLRFVS 680 (1915)
Q Consensus 638 ~Dg~I~IwDl~~~-------------------------------------~~~~~i~~l~~h~~~V~sl~fspdg~~L~s 680 (1915)
.+.|+||+..+. .....+-+..+|.+.|++|+.+|++..+++
T Consensus 393 -~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT 471 (888)
T KOG0306|consen 393 -GESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVT 471 (888)
T ss_pred -CCcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEE
Confidence 346666666421 111122234679999999999999999999
Q ss_pred EeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEe
Q psy9598 681 GSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVL 760 (1915)
Q Consensus 681 gs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l 760 (1915)
||.|.+|++||+....-. .-...................|.|+.+||||++|+++-- |++|+||-+.+.+...+|
T Consensus 472 ~saDktVkfWdf~l~~~~----~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLL-dnTVkVyflDtlKFflsL 546 (888)
T KOG0306|consen 472 GSADKTVKFWDFKLVVSV----PGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLL-DNTVKVYFLDTLKFFLSL 546 (888)
T ss_pred ecCCcEEEEEeEEEEecc----CcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEec-cCeEEEEEecceeeeeee
Confidence 999999999997532100 000000000001112234578999999999999999998 999999999999999999
Q ss_pred eCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEEeCCCeEEE
Q psy9598 761 KGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLV 840 (1915)
Q Consensus 761 ~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~dG~I~I 840 (1915)
.||.-+|.|+.++| |+.+++|||.|.+|+||-+.-|.| ...+. .|...|.++.|-|...++.+++.||.|+-
T Consensus 547 YGHkLPV~smDIS~-DSklivTgSADKnVKiWGLdFGDC--HKS~f-----AHdDSvm~V~F~P~~~~FFt~gKD~kvKq 618 (888)
T KOG0306|consen 547 YGHKLPVLSMDISP-DSKLIVTGSADKNVKIWGLDFGDC--HKSFF-----AHDDSVMSVQFLPKTHLFFTCGKDGKVKQ 618 (888)
T ss_pred cccccceeEEeccC-CcCeEEeccCCCceEEeccccchh--hhhhh-----cccCceeEEEEcccceeEEEecCcceEEe
Confidence 99999999999999 999999999999999999999999 66665 67789999999999999999999999999
Q ss_pred EeCCCCcccccCCC------ceeecCCCCeeeecCCCc-cceee
Q psy9598 841 YGLGGFKRPQNIPR------ELFFHTDYRTLNRPNGLF-EPTYD 877 (1915)
Q Consensus 841 wdl~s~~~~~~l~~------~~~F~~d~~~Lv~~~~~~-~~v~D 877 (1915)
||-...+.+..+.. .+.-+++|..++..+..+ +.+|.
T Consensus 619 WDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE 662 (888)
T KOG0306|consen 619 WDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWE 662 (888)
T ss_pred echhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeee
Confidence 99999999988887 356788898888777644 55664
|
|
| >KOG0315|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=293.41 Aligned_cols=296 Identities=18% Similarity=0.279 Sum_probs=248.9
Q ss_pred CCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCc--eEEEeecCCCCeEE
Q psy9598 488 GEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLA--PISVLVGHQGIITG 565 (1915)
Q Consensus 488 g~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~--~~~~l~~h~~~V~s 565 (1915)
.-+|+|+|.|.+|++|...+|.+..++....+.|+.|.+.|++.+||+|+ ...||+||+.++. ++.++.+|+..|++
T Consensus 10 ~viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~-~qhvRlyD~~S~np~Pv~t~e~h~kNVta 88 (311)
T KOG0315|consen 10 PVILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAG-NQHVRLYDLNSNNPNPVATFEGHTKNVTA 88 (311)
T ss_pred ceEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhcc-CCeeEEEEccCCCCCceeEEeccCCceEE
Confidence 35799999999999999999999999998888999999999999999988 4679999998865 58999999999999
Q ss_pred EEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEE
Q psy9598 566 VNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVY 645 (1915)
Q Consensus 566 l~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~Iw 645 (1915)
|.|.- +++.+++||.||+++|||++...+...+ .+..+|+++..+|+...|++|..+|.|+||
T Consensus 89 VgF~~----dgrWMyTgseDgt~kIWdlR~~~~qR~~-------------~~~spVn~vvlhpnQteLis~dqsg~irvW 151 (311)
T KOG0315|consen 89 VGFQC----DGRWMYTGSEDGTVKIWDLRSLSCQRNY-------------QHNSPVNTVVLHPNQTELISGDQSGNIRVW 151 (311)
T ss_pred EEEee----cCeEEEecCCCceEEEEeccCcccchhc-------------cCCCCcceEEecCCcceEEeecCCCcEEEE
Confidence 99997 5699999999999999999985432222 345889999999999999999999999999
Q ss_pred EecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEE
Q psy9598 646 KMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVT 725 (1915)
Q Consensus 646 Dl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~ 725 (1915)
|+.... ... ..+..-...|.++...|+|.+|+.+...|...+|++-+.+.. ...........|...+.
T Consensus 152 Dl~~~~-c~~-~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~----------s~l~P~~k~~ah~~~il 219 (311)
T KOG0315|consen 152 DLGENS-CTH-ELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTA----------SELEPVHKFQAHNGHIL 219 (311)
T ss_pred EccCCc-ccc-ccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCcc----------ccceEhhheecccceEE
Confidence 994321 111 112344578999999999999999999999999998764421 11222334567889999
Q ss_pred EEEECCCCCEEEEEEecCCeEEEEECCCC-ceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCcccccee
Q psy9598 726 MVAWDASDRWVITAINFNFQIKIWDAFNG-DLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKW 804 (1915)
Q Consensus 726 ~va~spdg~~L~t~s~~Dg~I~vwD~~tg-~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~ 804 (1915)
.+.+||++++|+++++ |.+++||++.+. +.-..+.+|...++.++||. ++.||+||+.|+.+++|++..++. +..
T Consensus 220 ~C~lSPd~k~lat~ss-dktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~-dg~YlvTassd~~~rlW~~~~~k~--v~q 295 (311)
T KOG0315|consen 220 RCLLSPDVKYLATCSS-DKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSA-DGEYLVTASSDHTARLWDLSAGKE--VRQ 295 (311)
T ss_pred EEEECCCCcEEEeecC-CceEEEEecCCceeeEEEeecCCceEEeeeecc-CccEEEecCCCCceeecccccCce--eee
Confidence 9999999999999999 999999999887 66778899999999999999 999999999999999999999987 666
Q ss_pred eeeeecCCCCcceEEEEE
Q psy9598 805 FHNIVEGQGEGALFDGKW 822 (1915)
Q Consensus 805 ~~~~~~~~~~~~V~~vaf 822 (1915)
+. .|+.+..|++.
T Consensus 296 y~-----gh~K~~vc~~l 308 (311)
T KOG0315|consen 296 YQ-----GHHKAAVCVAL 308 (311)
T ss_pred cC-----CcccccEEEEe
Confidence 55 34445555543
|
|
| >KOG0291|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-31 Score=320.97 Aligned_cols=378 Identities=18% Similarity=0.293 Sum_probs=303.6
Q ss_pred CCcEEEEEEcCCCCEEEEEECCCcEEEEECCCC--------cEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEEC
Q psy9598 476 LSAVFCVLFDKLGEVIVTGADDLLIKLWRARDG--------KLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNL 547 (1915)
Q Consensus 476 ~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg--------~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl 547 (1915)
..+|.||.|||+|+++|.|... .+.||..... .+..++.||-..|++|.|+.|.++|++||.|.+++||++
T Consensus 96 k~~v~~i~fSPng~~fav~~gn-~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v 174 (893)
T KOG0291|consen 96 KRGVGAIKFSPNGKFFAVGCGN-LLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGV 174 (893)
T ss_pred cCccceEEECCCCcEEEEEecc-eeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEe
Confidence 5789999999999999998765 8999986432 356678899999999999999999999999999999999
Q ss_pred CCCce--EEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccce-------------------eccC
Q psy9598 548 QTLAP--ISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKT-------------------VFHE 606 (1915)
Q Consensus 548 ~tg~~--~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~-------------------~~~~ 606 (1915)
...+. ...+.+|.+.|.+.-|..+ ...|++.+.||.|.+|........... ..+.
T Consensus 175 ~~~k~~~~~~l~gHkd~VvacfF~~~----~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~ 250 (893)
T KOG0291|consen 175 DGNKNLFTYALNGHKDYVVACFFGAN----SLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHK 250 (893)
T ss_pred ccccccceEeccCCCcceEEEEeccC----cceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcc
Confidence 87665 6678899999999999874 478999999999999987622100000 0000
Q ss_pred cc---ccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeC
Q psy9598 607 PV---MFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSR 683 (1915)
Q Consensus 607 ~~---~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~ 683 (1915)
.. .....+......|+|++|++....||+|-..|...+|.+ .....++.+.-....|..++|+..|..|+.|+.
T Consensus 251 ~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~Lyel---P~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~ 327 (893)
T KOG0291|consen 251 IFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYEL---PDFNLIHSLSISDQKILTVSFNSTGDWIAFGCS 327 (893)
T ss_pred eEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEec---CCceEEEEeecccceeeEEEecccCCEEEEcCC
Confidence 00 000112223378999999999999999999999999999 455667777777789999999999999999886
Q ss_pred C-CcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeC
Q psy9598 684 D-GTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKG 762 (1915)
Q Consensus 684 D-G~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~g 762 (1915)
. |.+.||+.++...+. ...+|...+++++++|||++|++|+. ||.|+|||..+|-|+.+|..
T Consensus 328 klgQLlVweWqsEsYVl----------------KQQgH~~~i~~l~YSpDgq~iaTG~e-DgKVKvWn~~SgfC~vTFte 390 (893)
T KOG0291|consen 328 KLGQLLVWEWQSESYVL----------------KQQGHSDRITSLAYSPDGQLIATGAE-DGKVKVWNTQSGFCFVTFTE 390 (893)
T ss_pred ccceEEEEEeeccceee----------------eccccccceeeEEECCCCcEEEeccC-CCcEEEEeccCceEEEEecc
Confidence 5 899999988766432 34568889999999999999999999 99999999999999999999
Q ss_pred CCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeee-----------------------------------
Q psy9598 763 HTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHN----------------------------------- 807 (1915)
Q Consensus 763 H~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~----------------------------------- 807 (1915)
|++.|+++.|+. .++.|++.+-||+|+.||+...+. .++|..
T Consensus 391 Hts~Vt~v~f~~-~g~~llssSLDGtVRAwDlkRYrN--fRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qT 467 (893)
T KOG0291|consen 391 HTSGVTAVQFTA-RGNVLLSSSLDGTVRAWDLKRYRN--FRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQT 467 (893)
T ss_pred CCCceEEEEEEe-cCCEEEEeecCCeEEeeeecccce--eeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeec
Confidence 999999999999 999999999999999999976544 222210
Q ss_pred ----eecCCCCcceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc-ccccC-----CCceeecCCCCeeeecC-CCcccee
Q psy9598 808 ----IVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGGFK-RPQNI-----PRELFFHTDYRTLNRPN-GLFEPTY 876 (1915)
Q Consensus 808 ----~~~~~~~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl~s~~-~~~~l-----~~~~~F~~d~~~Lv~~~-~~~~~v~ 876 (1915)
-+..+|.++|.+++|+|+|..||+++.|.+|++|++-+.. ...++ ...+.|+|||.-++... .+.+.+|
T Consensus 468 GqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~ 547 (893)
T KOG0291|consen 468 GQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFF 547 (893)
T ss_pred CeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEE
Confidence 0113567999999999999999999999999999986542 22222 23688999999888554 3346689
Q ss_pred ecccC
Q psy9598 877 DEVTN 881 (1915)
Q Consensus 877 D~~t~ 881 (1915)
|...+
T Consensus 548 d~~~~ 552 (893)
T KOG0291|consen 548 DIKEA 552 (893)
T ss_pred Ehhhc
Confidence 97754
|
|
| >KOG0286|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-32 Score=297.54 Aligned_cols=293 Identities=17% Similarity=0.222 Sum_probs=259.8
Q ss_pred EEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEE
Q psy9598 511 LATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGF 590 (1915)
Q Consensus 511 ~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~i 590 (1915)
..+|+||.+.|.++.|++|.++|+|+|.||.+.|||.-|...++.+.-....|..++|+|.+ +++++|+-|+...|
T Consensus 48 rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg----~~VAcGGLdN~Csi 123 (343)
T KOG0286|consen 48 RRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSG----NFVACGGLDNKCSI 123 (343)
T ss_pred EEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCC----CeEEecCcCceeEE
Confidence 37899999999999999999999999999999999999999999998889999999999954 99999999999999
Q ss_pred EecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEE
Q psy9598 591 WKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQ 670 (1915)
Q Consensus 591 WDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~ 670 (1915)
|++.+..... .......+.+|.+.+.|+.|..|+ .|++|+.|.+..+||+ ...+.+..+.+|.+.|.+|+
T Consensus 124 y~ls~~d~~g------~~~v~r~l~gHtgylScC~f~dD~-~ilT~SGD~TCalWDi---e~g~~~~~f~GH~gDV~sls 193 (343)
T KOG0286|consen 124 YPLSTRDAEG------NVRVSRELAGHTGYLSCCRFLDDN-HILTGSGDMTCALWDI---ETGQQTQVFHGHTGDVMSLS 193 (343)
T ss_pred Eecccccccc------cceeeeeecCccceeEEEEEcCCC-ceEecCCCceEEEEEc---ccceEEEEecCCcccEEEEe
Confidence 9998652211 112233456889999999999855 7999999999999999 56778889999999999999
Q ss_pred EcC-CCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEE
Q psy9598 671 WSH-SHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIW 749 (1915)
Q Consensus 671 fsp-dg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vw 749 (1915)
++| +++.|++|+.|++.+|||++.+.++.. ..+|...|++|+|.|+|.-+++|+. |+++++|
T Consensus 194 l~p~~~ntFvSg~cD~~aklWD~R~~~c~qt----------------F~ghesDINsv~ffP~G~afatGSD-D~tcRly 256 (343)
T KOG0286|consen 194 LSPSDGNTFVSGGCDKSAKLWDVRSGQCVQT----------------FEGHESDINSVRFFPSGDAFATGSD-DATCRLY 256 (343)
T ss_pred cCCCCCCeEEecccccceeeeeccCcceeEe----------------ecccccccceEEEccCCCeeeecCC-CceeEEE
Confidence 999 999999999999999999999886653 4568899999999999999999998 9999999
Q ss_pred ECCCCceEEEeeCC--CCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCC
Q psy9598 750 DAFNGDLVQVLKGH--TNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGT 827 (1915)
Q Consensus 750 D~~tg~~i~~l~gH--~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~ 827 (1915)
|++..+.+..+... ..+|++|+|+- .|++|++|..|.++.+||.-.++. +..+. .|.+.|.++..+|||.
T Consensus 257 DlRaD~~~a~ys~~~~~~gitSv~FS~-SGRlLfagy~d~~c~vWDtlk~e~--vg~L~-----GHeNRvScl~~s~DG~ 328 (343)
T KOG0286|consen 257 DLRADQELAVYSHDSIICGITSVAFSK-SGRLLFAGYDDFTCNVWDTLKGER--VGVLA-----GHENRVSCLGVSPDGM 328 (343)
T ss_pred eecCCcEEeeeccCcccCCceeEEEcc-cccEEEeeecCCceeEeeccccce--EEEee-----ccCCeeEEEEECCCCc
Confidence 99999988888732 35899999998 999999999999999999988777 44444 6778999999999999
Q ss_pred EEEEEeCCCeEEEEe
Q psy9598 828 TCALTDSYGHLLVYG 842 (1915)
Q Consensus 828 ~Lasg~~dG~I~Iwd 842 (1915)
.|++|+.|..|+||.
T Consensus 329 av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 329 AVATGSWDSTLRIWA 343 (343)
T ss_pred EEEecchhHheeecC
Confidence 999999999999994
|
|
| >KOG0295|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-33 Score=314.15 Aligned_cols=301 Identities=23% Similarity=0.384 Sum_probs=270.5
Q ss_pred EEecccCCceeeeEEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEE
Q psy9598 457 MISSHKYSNLRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAG 536 (1915)
Q Consensus 457 ~i~~~~~~~~~~~~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSg 536 (1915)
..+........+...+.||..+|+.+.|+|+-.++|+++.|++|++||..+|++...++||...|.+|+|+..|.+||++
T Consensus 89 ~~~~~wipRp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tc 168 (406)
T KOG0295|consen 89 RTPALWIPRPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATC 168 (406)
T ss_pred cChhhcCCCCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEec
Confidence 33333445556667889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCcEEEEECCC-CceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccC
Q psy9598 537 TVDKTIRIWNLQT-LAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIR 615 (1915)
Q Consensus 537 s~DgtIrVWDl~t-g~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~ 615 (1915)
+.|-.+.+||..+ .+++..+.+|...|.+++|.|.+ .+|++++.|.+|+.|++.++-++.++.
T Consensus 169 SsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~g----d~ilS~srD~tik~We~~tg~cv~t~~------------ 232 (406)
T KOG0295|consen 169 SSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLG----DHILSCSRDNTIKAWECDTGYCVKTFP------------ 232 (406)
T ss_pred CCccchhheeHHHHHHHHHHhcCcccceeeEEEEecC----CeeeecccccceeEEecccceeEEecc------------
Confidence 9999999999987 67888899999999999999964 999999999999999999997655443
Q ss_pred CCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCC---------------CCEEEE
Q psy9598 616 PGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHS---------------HLRFVS 680 (1915)
Q Consensus 616 ~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspd---------------g~~L~s 680 (1915)
+|...|..+..+.||.++++++.|.+|++|-+ ....+...+..|..+|-+++|.|. +.++++
T Consensus 233 ~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~---~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s 309 (406)
T KOG0295|consen 233 GHSEWVRMVRVNQDGTIIASCSNDQTLRVWVV---ATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGS 309 (406)
T ss_pred CchHhEEEEEecCCeeEEEecCCCceEEEEEe---ccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEe
Confidence 45678999999999999999999999999998 444556678899999999999763 258999
Q ss_pred EeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEe
Q psy9598 681 GSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVL 760 (1915)
Q Consensus 681 gs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l 760 (1915)
++.|++|++||+.++.++.. ..+|...|..++|+|.|+||+++.. |++++|||+.++++..++
T Consensus 310 ~SrDktIk~wdv~tg~cL~t----------------L~ghdnwVr~~af~p~Gkyi~ScaD-Dktlrvwdl~~~~cmk~~ 372 (406)
T KOG0295|consen 310 GSRDKTIKIWDVSTGMCLFT----------------LVGHDNWVRGVAFSPGGKYILSCAD-DKTLRVWDLKNLQCMKTL 372 (406)
T ss_pred ecccceEEEEeccCCeEEEE----------------EecccceeeeeEEcCCCeEEEEEec-CCcEEEEEeccceeeecc
Confidence 99999999999999986653 3568899999999999999999998 999999999999999999
Q ss_pred eCCCCCeEEEEEccCCCCEEEEEecCceEEEEEC
Q psy9598 761 KGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDI 794 (1915)
Q Consensus 761 ~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl 794 (1915)
..|..-|+++.|+. +..+++||+-|.++++|.-
T Consensus 373 ~ah~hfvt~lDfh~-~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 373 EAHEHFVTSLDFHK-TAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred CCCcceeEEEecCC-CCceEEeccccceeeeeec
Confidence 99999999999998 7789999999999999964
|
|
| >KOG0285|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-33 Score=308.04 Aligned_cols=302 Identities=24% Similarity=0.376 Sum_probs=258.3
Q ss_pred cCCceeeeEEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCc
Q psy9598 462 KYSNLRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKT 541 (1915)
Q Consensus 462 ~~~~~~~~~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~Dgt 541 (1915)
....+++.+.+.||.+.|.||++.|.+.+|+||+.|++|+|||+.+|++..++.||-..|..+++|+-..||++++.|+.
T Consensus 137 WHapwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~ 216 (460)
T KOG0285|consen 137 WHAPWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQ 216 (460)
T ss_pred ccCcceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCe
Confidence 34567888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCce
Q psy9598 542 IRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHI 621 (1915)
Q Consensus 542 IrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V 621 (1915)
|+.||+...+.+..+.||-..|.|++.+|.- +.|++|+.|.++++||+++.
T Consensus 217 VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTl----dvl~t~grDst~RvWDiRtr------------------------- 267 (460)
T KOG0285|consen 217 VKCWDLEYNKVIRHYHGHLSGVYCLDLHPTL----DVLVTGGRDSTIRVWDIRTR------------------------- 267 (460)
T ss_pred eEEEechhhhhHHHhccccceeEEEeccccc----eeEEecCCcceEEEeeeccc-------------------------
Confidence 9999999999999999999999888888843 55566665555555555433
Q ss_pred EEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEee
Q psy9598 622 LCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIR 701 (1915)
Q Consensus 622 ~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~ 701 (1915)
..+..+.||..+|.+|.+.|....+++||.|++|++||+..++...
T Consensus 268 --------------------------------~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~-- 313 (460)
T KOG0285|consen 268 --------------------------------ASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMI-- 313 (460)
T ss_pred --------------------------------ceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeE--
Confidence 3355677899999999999988899999999999999999887433
Q ss_pred ecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEE
Q psy9598 702 LDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLL 781 (1915)
Q Consensus 702 ~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~La 781 (1915)
....|...|.+++.+|....+++++. ..|+.|++..|..++.+.+|...|++++.+. ..+++
T Consensus 314 --------------tlt~hkksvral~lhP~e~~fASas~--dnik~w~~p~g~f~~nlsgh~~iintl~~ns--D~v~~ 375 (460)
T KOG0285|consen 314 --------------TLTHHKKSVRALCLHPKENLFASASP--DNIKQWKLPEGEFLQNLSGHNAIINTLSVNS--DGVLV 375 (460)
T ss_pred --------------eeecccceeeEEecCCchhhhhccCC--ccceeccCCccchhhccccccceeeeeeecc--CceEE
Confidence 23457888999999999988888875 5699999999999999999999999999876 56899
Q ss_pred EEecCceEEEEECCCCccccceeeeeeecC---CCCcceEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q psy9598 782 SAGHDGLIIIWDILSSKQRGYKWFHNIVEG---QGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGGF 846 (1915)
Q Consensus 782 Sgs~DG~I~IWdl~s~~~~~~~~~~~~~~~---~~~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl~s~ 846 (1915)
+|+..|.|.+||..++-. .+.+..++.. .....|++.+|...|..|++|..|.+|.+|.-+..
T Consensus 376 ~G~dng~~~fwdwksg~n--yQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keDe~ 441 (460)
T KOG0285|consen 376 SGGDNGSIMFWDWKSGHN--YQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKEDEH 441 (460)
T ss_pred EcCCceEEEEEecCcCcc--cccccccccCCccccccceeEEeecccCceEEeccCCcceEEEecccc
Confidence 999999999999999876 4444332221 12257899999999999999999999999986654
|
|
| >KOG0265|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=301.92 Aligned_cols=290 Identities=20% Similarity=0.329 Sum_probs=251.2
Q ss_pred EecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECC-CCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCC
Q psy9598 471 VNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRAR-DGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQT 549 (1915)
Q Consensus 471 ~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~-tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~t 549 (1915)
.+.||.+.|+++.|+|+|.+||||+.|..|.+|++. ..+-...++||.+.|..+.|..|++.|+++|.|.+|++||+++
T Consensus 42 ~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~t 121 (338)
T KOG0265|consen 42 LLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAET 121 (338)
T ss_pred hcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEeccc
Confidence 567999999999999999999999999999999954 4466778899999999999999999999999999999999999
Q ss_pred CceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCC
Q psy9598 550 LAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPG 629 (1915)
Q Consensus 550 g~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspd 629 (1915)
|+++..+.+|.+.|+++.-+.. +..++.+|+.||++++||++....+.++.. ..++++++|...
T Consensus 122 G~~~rk~k~h~~~vNs~~p~rr---g~~lv~SgsdD~t~kl~D~R~k~~~~t~~~-------------kyqltAv~f~d~ 185 (338)
T KOG0265|consen 122 GKRIRKHKGHTSFVNSLDPSRR---GPQLVCSGSDDGTLKLWDIRKKEAIKTFEN-------------KYQLTAVGFKDT 185 (338)
T ss_pred ceeeehhccccceeeecCcccc---CCeEEEecCCCceEEEEeecccchhhcccc-------------ceeEEEEEeccc
Confidence 9999999999999999984442 457889999999999999998766544422 267899999999
Q ss_pred CcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCc----eEEeeeccc
Q psy9598 630 GLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQ----WRFIRLDMN 705 (1915)
Q Consensus 630 g~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~----~~~~~~~~~ 705 (1915)
+..+++|+-|+.|++||++ .......+.||.+.|+.|..+++|.++.+-+.|.++++||++... ++.+..
T Consensus 186 s~qv~sggIdn~ikvWd~r---~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~--- 259 (338)
T KOG0265|consen 186 SDQVISGGIDNDIKVWDLR---KNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQ--- 259 (338)
T ss_pred ccceeeccccCceeeeccc---cCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEee---
Confidence 9999999999999999994 345678899999999999999999999999999999999987432 111111
Q ss_pred ccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEEec
Q psy9598 706 TCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGH 785 (1915)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~ 785 (1915)
............++|+|+++++.+++. |..+++||..+..++..+.||.+.|++++|+| ...+|.+++.
T Consensus 260 ---------g~~hnfeknlL~cswsp~~~~i~ags~-dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp-~e~iils~~s 328 (338)
T KOG0265|consen 260 ---------GHIHNFEKNLLKCSWSPNGTKITAGSA-DRFVYVWDTTSRRILYKLPGHYGSVNEVDFHP-TEPIILSCSS 328 (338)
T ss_pred ---------cchhhhhhhcceeeccCCCCccccccc-cceEEEeecccccEEEEcCCcceeEEEeeecC-CCcEEEEecc
Confidence 111122334567899999999999988 99999999999999999999999999999999 8899999999
Q ss_pred CceEEEEE
Q psy9598 786 DGLIIIWD 793 (1915)
Q Consensus 786 DG~I~IWd 793 (1915)
|.+|++=.
T Consensus 329 dk~i~lge 336 (338)
T KOG0265|consen 329 DKTIYLGE 336 (338)
T ss_pred CceeEeec
Confidence 99998743
|
|
| >KOG0279|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-32 Score=292.97 Aligned_cols=294 Identities=23% Similarity=0.327 Sum_probs=245.7
Q ss_pred cEEEEEeCCCCCEEEEEEeCC-CCEEEEEeCCCcEEEEECC-----CCceEEEeecCCCCeEEEEeccCccCCCcEEEEE
Q psy9598 509 KLLATLRGCSGEISDIAIDNR-NILLAAGTVDKTIRIWNLQ-----TLAPISVLVGHQGIITGVNFCPLEVNGFNYLAST 582 (1915)
Q Consensus 509 ~~~~~l~gH~~~I~~Lafspd-g~~LaSgs~DgtIrVWDl~-----tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sg 582 (1915)
.+..++.+|.+.|+.++..+. ...|++++.|.+|.+|++. .|.++..+.||...|..+..++ ++++.+++
T Consensus 6 ~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~----dg~~alS~ 81 (315)
T KOG0279|consen 6 VLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSS----DGNFALSA 81 (315)
T ss_pred eeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEcc----CCceEEec
Confidence 456689999999999999886 5689999999999999985 4778999999999999999998 55999999
Q ss_pred eCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccC
Q psy9598 583 STDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEH 662 (1915)
Q Consensus 583 s~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h 662 (1915)
+.|+++++||+.++.... .+.+|...|.+++|+++.+.|++|+.|.+|++|++-+ .+..++..+
T Consensus 82 swD~~lrlWDl~~g~~t~------------~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g----~ck~t~~~~ 145 (315)
T KOG0279|consen 82 SWDGTLRLWDLATGESTR------------RFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLG----VCKYTIHED 145 (315)
T ss_pred cccceEEEEEecCCcEEE------------EEEecCCceEEEEecCCCceeecCCCcceeeeeeecc----cEEEEEecC
Confidence 999999999999885422 2336788999999999999999999999999999832 334444333
Q ss_pred --CCCeeEEEEcCC--CCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEE
Q psy9598 663 --SDKVDSIQWSHS--HLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVIT 738 (1915)
Q Consensus 663 --~~~V~sl~fspd--g~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t 738 (1915)
.+.|.|+.|+|+ ..+|+++|.|++|++||+++.+.. ....+|.+.++.+++||||..+++
T Consensus 146 ~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~----------------~~~~gh~~~v~t~~vSpDGslcas 209 (315)
T KOG0279|consen 146 SHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLR----------------TTFIGHSGYVNTVTVSPDGSLCAS 209 (315)
T ss_pred CCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchh----------------hccccccccEEEEEECCCCCEEec
Confidence 789999999999 679999999999999999987633 234568899999999999999999
Q ss_pred EEecCCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCC----CC
Q psy9598 739 AINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQ----GE 814 (1915)
Q Consensus 739 ~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~----~~ 814 (1915)
|+. ||.+.+||+..++.+..+ +|...|.+++|+| + ++.+++..+..|+|||+.++.. +..+..-..+. ..
T Consensus 210 Ggk-dg~~~LwdL~~~k~lysl-~a~~~v~sl~fsp-n-rywL~~at~~sIkIwdl~~~~~--v~~l~~d~~g~s~~~~~ 283 (315)
T KOG0279|consen 210 GGK-DGEAMLWDLNEGKNLYSL-EAFDIVNSLCFSP-N-RYWLCAATATSIKIWDLESKAV--VEELKLDGIGPSSKAGD 283 (315)
T ss_pred CCC-CceEEEEEccCCceeEec-cCCCeEeeEEecC-C-ceeEeeccCCceEEEeccchhh--hhhccccccccccccCC
Confidence 888 999999999999998887 4778899999999 4 5555566677899999999887 54444222221 11
Q ss_pred cceEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q psy9598 815 GALFDGKWSPDGTTCALTDSYGHLLVYGLG 844 (1915)
Q Consensus 815 ~~V~~vafSpdg~~Lasg~~dG~I~Iwdl~ 844 (1915)
....+++|++||..|.+|..|+.|++|.+.
T Consensus 284 ~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 284 PICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred cEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 235678999999999999999999999875
|
|
| >KOG0296|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-31 Score=300.36 Aligned_cols=340 Identities=17% Similarity=0.212 Sum_probs=282.2
Q ss_pred EEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCC
Q psy9598 470 YVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQT 549 (1915)
Q Consensus 470 ~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~t 549 (1915)
.+|.+|+.+|++|+.+|+.+++|||+.|..-.||++.+|..+..+.||...|+|+.|+.+|.+||||..+|.|+||...+
T Consensus 58 ~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~st 137 (399)
T KOG0296|consen 58 VTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVST 137 (399)
T ss_pred eehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEccc
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCC
Q psy9598 550 LAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPG 629 (1915)
Q Consensus 550 g~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspd 629 (1915)
+.....+...-..|.-+.|+|.. ..|+.|+.||.|-+|.+..... ...+.+|+..++|-.|.|+
T Consensus 138 g~~~~~~~~e~~dieWl~WHp~a----~illAG~~DGsvWmw~ip~~~~------------~kv~~Gh~~~ct~G~f~pd 201 (399)
T KOG0296|consen 138 GGEQWKLDQEVEDIEWLKWHPRA----HILLAGSTDGSVWMWQIPSQAL------------CKVMSGHNSPCTCGEFIPD 201 (399)
T ss_pred CceEEEeecccCceEEEEecccc----cEEEeecCCCcEEEEECCCcce------------eeEecCCCCCcccccccCC
Confidence 99998887777888999999954 8999999999999999877522 2233467899999999999
Q ss_pred CcEEEEEeCCCeEEEEEecCCCCCceeEEecc-CCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccC
Q psy9598 630 GLFLATGSGDHHVRVYKMDGVDSPLGILEVEE-HSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCL 708 (1915)
Q Consensus 630 g~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~-h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~ 708 (1915)
|+.+++|..||+|++|++. +...+..+.+ ......++.++..+..+++|+.++.+++-...+++.+......
T Consensus 202 GKr~~tgy~dgti~~Wn~k---tg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~---- 274 (399)
T KOG0296|consen 202 GKRILTGYDDGTIIVWNPK---TGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGT---- 274 (399)
T ss_pred CceEEEEecCceEEEEecC---CCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCC----
Confidence 9999999999999999994 3344444432 2445778899999999999999999999988888755433210
Q ss_pred CCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEEecCce
Q psy9598 709 PHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGL 788 (1915)
Q Consensus 709 ~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~ 788 (1915)
..............|-++.|+..=.+.++|+- ||+|.|||+.+..+.+.+ .|...|+.+.|-+ ..+|++++.+|.
T Consensus 275 -~~~l~~~~e~~~esve~~~~ss~lpL~A~G~v-dG~i~iyD~a~~~~R~~c-~he~~V~~l~w~~--t~~l~t~c~~g~ 349 (399)
T KOG0296|consen 275 -VPELKPSQEELDESVESIPSSSKLPLAACGSV-DGTIAIYDLAASTLRHIC-EHEDGVTKLKWLN--TDYLLTACANGK 349 (399)
T ss_pred -Cccccccchhhhhhhhhcccccccchhhcccc-cceEEEEecccchhheec-cCCCceEEEEEcC--cchheeeccCce
Confidence 00111111222334444555555556666666 999999999887766655 5888899999987 678999999999
Q ss_pred EEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q psy9598 789 IIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLG 844 (1915)
Q Consensus 789 I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl~ 844 (1915)
|++||.++|++ +..+. .|...|.+++++|+++++++++.|+..+||.+.
T Consensus 350 v~~wDaRtG~l--~~~y~-----GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 350 VRQWDARTGQL--KFTYT-----GHQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred EEeeeccccce--EEEEe-----cCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 99999999999 66666 677899999999999999999999999999864
|
|
| >KOG0293|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=310.47 Aligned_cols=293 Identities=18% Similarity=0.271 Sum_probs=241.2
Q ss_pred eeeEEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCC---cEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEE
Q psy9598 467 RQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDG---KLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIR 543 (1915)
Q Consensus 467 ~~~~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg---~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIr 543 (1915)
+..++|..|++.|+-+.||++|+|||||+.|.+..||.+... ++.+++.||..+|..|.||||.++|++|+.|..+.
T Consensus 215 qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~ 294 (519)
T KOG0293|consen 215 QTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLS 294 (519)
T ss_pred hhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHhee
Confidence 344578899999999999999999999999999999987543 56889999999999999999999999999999999
Q ss_pred EEECCCCceEEEee-cCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceE
Q psy9598 544 IWNLQTLAPISVLV-GHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHIL 622 (1915)
Q Consensus 544 VWDl~tg~~~~~l~-~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~ 622 (1915)
+||+.+|.+.+.+. +|...+.+++|+|+ +..+++|+.|++|..||++....-..... ....|.
T Consensus 295 lwDv~tgd~~~~y~~~~~~S~~sc~W~pD----g~~~V~Gs~dr~i~~wdlDgn~~~~W~gv------------r~~~v~ 358 (519)
T KOG0293|consen 295 LWDVDTGDLRHLYPSGLGFSVSSCAWCPD----GFRFVTGSPDRTIIMWDLDGNILGNWEGV------------RDPKVH 358 (519)
T ss_pred eccCCcchhhhhcccCcCCCcceeEEccC----CceeEecCCCCcEEEecCCcchhhccccc------------ccceeE
Confidence 99999999888775 35678999999995 48899999999999999987642111111 124589
Q ss_pred EEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeee
Q psy9598 623 CSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRL 702 (1915)
Q Consensus 623 ~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~ 702 (1915)
+++.++||.++++.+.|..|++|+..... ... +..-..+|+++++|.+|.++++.-.+..|++||+.....+..
T Consensus 359 dlait~Dgk~vl~v~~d~~i~l~~~e~~~---dr~-lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~k-- 432 (519)
T KOG0293|consen 359 DLAITYDGKYVLLVTVDKKIRLYNREARV---DRG-LISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRK-- 432 (519)
T ss_pred EEEEcCCCcEEEEEecccceeeechhhhh---hhc-cccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHH--
Confidence 99999999999999999999999984322 111 223457899999999999999999999999999985442211
Q ss_pred cccccCCCCccccccccc--cccEEEEEECCC-CCEEEEEEecCCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCE
Q psy9598 703 DMNTCLPHTKETSDETNK--KIKVTMVAWDAS-DRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRV 779 (1915)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~--~~~V~~va~spd-g~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~ 779 (1915)
..+| ..-+..-||... ..++++|+. |+.|+||+..+|+++.++.||...|++|+|+|.+..+
T Consensus 433 --------------Y~Ghkq~~fiIrSCFgg~~~~fiaSGSE-D~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m 497 (519)
T KOG0293|consen 433 --------------YFGHKQGHFIIRSCFGGGNDKFIASGSE-DSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEM 497 (519)
T ss_pred --------------hhcccccceEEEeccCCCCcceEEecCC-CceEEEEEccCCceeEeecCCcceeeEEecCCCCHHH
Confidence 1112 223344455544 466777766 9999999999999999999999999999999999999
Q ss_pred EEEEecCceEEEEECCC
Q psy9598 780 LLSAGHDGLIIIWDILS 796 (1915)
Q Consensus 780 LaSgs~DG~I~IWdl~s 796 (1915)
+|+||.||+|+||-...
T Consensus 498 ~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 498 FASASDDGTIRIWGPSD 514 (519)
T ss_pred hhccCCCCeEEEecCCc
Confidence 99999999999998754
|
|
| >KOG0645|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-31 Score=286.64 Aligned_cols=294 Identities=21% Similarity=0.344 Sum_probs=249.1
Q ss_pred eeeeEEecCCCCcEEEEEEcCC-CCEEEEEECCCcEEEEECCC---CcEEEEE-eCCCCCEEEEEEeCCCCEEEEEeCCC
Q psy9598 466 LRQHYVNLGHLSAVFCVLFDKL-GEVIVTGADDLLIKLWRARD---GKLLATL-RGCSGEISDIAIDNRNILLAAGTVDK 540 (1915)
Q Consensus 466 ~~~~~~l~gH~~~V~~vafspd-g~~LaTGs~Dg~I~IWd~~t---g~~~~~l-~gH~~~I~~Lafspdg~~LaSgs~Dg 540 (1915)
+...+++.||.+.|+.++|+|- |..|||||.|..|+||+... ..+...+ .+|...|.+++|+|.|++||+||.|.
T Consensus 4 l~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~ 83 (312)
T KOG0645|consen 4 LILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDA 83 (312)
T ss_pred ceeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccc
Confidence 4456789999999999999998 88999999999999999875 3455555 48999999999999999999999999
Q ss_pred cEEEEECCC--CceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCC
Q psy9598 541 TIRIWNLQT--LAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGN 618 (1915)
Q Consensus 541 tIrVWDl~t--g~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~ 618 (1915)
++.||.-.. .+++.+|.||...|.|++|++ ++.+|++++.|.+|-||.+..+... .....+.+|.
T Consensus 84 t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~----sG~~LATCSRDKSVWiWe~deddEf---------ec~aVL~~Ht 150 (312)
T KOG0645|consen 84 TVVIWKKEDGEFECVATLEGHENEVKCVAWSA----SGNYLATCSRDKSVWIWEIDEDDEF---------ECIAVLQEHT 150 (312)
T ss_pred eEEEeecCCCceeEEeeeeccccceeEEEEcC----CCCEEEEeeCCCeEEEEEecCCCcE---------EEEeeecccc
Confidence 999998753 578999999999999999998 4599999999999999998755322 2233456788
Q ss_pred CceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceE
Q psy9598 619 AHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWR 698 (1915)
Q Consensus 619 ~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~ 698 (1915)
..|..+.|+|...+|++++.|.+|++|.-.......++.++.+|.+.|.+++|++.|..|++++.|++|+||-+.+.-
T Consensus 151 qDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~-- 228 (312)
T KOG0645|consen 151 QDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDL-- 228 (312)
T ss_pred ccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCc--
Confidence 999999999999999999999999999886566778899999999999999999999999999999999999644221
Q ss_pred EeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCC------ceEE-EeeCCCCCeEEEE
Q psy9598 699 FIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNG------DLVQ-VLKGHTNEVFVLE 771 (1915)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg------~~i~-~l~gH~~~V~sl~ 771 (1915)
...|...+..++|. ...|++++. |+.|++|-...+ +++. .-..|...|++|.
T Consensus 229 ------------------~~~~sr~~Y~v~W~--~~~IaS~gg-D~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~ 287 (312)
T KOG0645|consen 229 ------------------SGMHSRALYDVPWD--NGVIASGGG-DDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQ 287 (312)
T ss_pred ------------------chhcccceEeeeec--ccceEeccC-CCEEEEEEecCCCCCchHHHHHhhhcccccccceEE
Confidence 12366788999998 557788887 999999976542 1222 3347888999999
Q ss_pred EccCCCCEEEEEecCceEEEEECC
Q psy9598 772 SHPFDSRVLLSAGHDGLIIIWDIL 795 (1915)
Q Consensus 772 ~sp~dg~~LaSgs~DG~I~IWdl~ 795 (1915)
|.|...++|++||.||.|++|.+.
T Consensus 288 w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 288 WNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred EcCCCCCceeecCCCceEEEEEec
Confidence 999557899999999999999874
|
|
| >KOG0315|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-30 Score=279.27 Aligned_cols=283 Identities=15% Similarity=0.221 Sum_probs=236.7
Q ss_pred CCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccc
Q psy9598 530 NILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVM 609 (1915)
Q Consensus 530 g~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~ 609 (1915)
.-+|||+|.|.+||+|...+|.|..++....+.|+.+...|+ +..|++++. -.|++||++++.......
T Consensus 10 ~viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpd----k~~LAaa~~-qhvRlyD~~S~np~Pv~t------ 78 (311)
T KOG0315|consen 10 PVILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPD----KKDLAAAGN-QHVRLYDLNSNNPNPVAT------ 78 (311)
T ss_pred ceEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCC----cchhhhccC-CeeEEEEccCCCCCceeE------
Confidence 348999999999999999999999999988889999999995 477777775 569999999886433333
Q ss_pred cccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEE
Q psy9598 610 FNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALI 689 (1915)
Q Consensus 610 ~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~I 689 (1915)
+.+|...|.++.|..+|+++++|+.||+++|||++. +. ......|..+|++|..+|+...|++|..+|.|+|
T Consensus 79 ----~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~---~~-~qR~~~~~spVn~vvlhpnQteLis~dqsg~irv 150 (311)
T KOG0315|consen 79 ----FEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRS---LS-CQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRV 150 (311)
T ss_pred ----EeccCCceEEEEEeecCeEEEecCCCceEEEEeccC---cc-cchhccCCCCcceEEecCCcceEEeecCCCcEEE
Confidence 336778999999999999999999999999999964 22 2233467899999999999999999999999999
Q ss_pred EEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCC------ceEEEeeCC
Q psy9598 690 WYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNG------DLVQVLKGH 763 (1915)
Q Consensus 690 WDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg------~~i~~l~gH 763 (1915)
||+....+.... .......|.+++..++|.+|+++.+ .|.+++|++-+. .++..++.|
T Consensus 151 WDl~~~~c~~~l---------------iPe~~~~i~sl~v~~dgsml~a~nn-kG~cyvW~l~~~~~~s~l~P~~k~~ah 214 (311)
T KOG0315|consen 151 WDLGENSCTHEL---------------IPEDDTSIQSLTVMPDGSMLAAANN-KGNCYVWRLLNHQTASELEPVHKFQAH 214 (311)
T ss_pred EEccCCcccccc---------------CCCCCcceeeEEEcCCCcEEEEecC-CccEEEEEccCCCccccceEhhheecc
Confidence 999877643311 1113367899999999999999988 999999998754 467778999
Q ss_pred CCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEEeCCCeEEEEeC
Q psy9598 764 TNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGL 843 (1915)
Q Consensus 764 ~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl 843 (1915)
.+.+..+.+|| ++.+|||+|.|.+++||++.+. ......+. .|...+++++||.||.+|++|+.|+.+++|++
T Consensus 215 ~~~il~C~lSP-d~k~lat~ssdktv~iwn~~~~-~kle~~l~-----gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~ 287 (311)
T KOG0315|consen 215 NGHILRCLLSP-DVKYLATCSSDKTVKIWNTDDF-FKLELVLT-----GHQRWVWDCAFSADGEYLVTASSDHTARLWDL 287 (311)
T ss_pred cceEEEEEECC-CCcEEEeecCCceEEEEecCCc-eeeEEEee-----cCCceEEeeeeccCccEEEecCCCCceeeccc
Confidence 99999999999 9999999999999999999876 21122222 46689999999999999999999999999999
Q ss_pred CCCcccccCCC
Q psy9598 844 GGFKRPQNIPR 854 (1915)
Q Consensus 844 ~s~~~~~~l~~ 854 (1915)
..++.+...+.
T Consensus 288 ~~~k~v~qy~g 298 (311)
T KOG0315|consen 288 SAGKEVRQYQG 298 (311)
T ss_pred ccCceeeecCC
Confidence 99887665544
|
|
| >KOG0282|consensus | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.7e-32 Score=312.63 Aligned_cols=299 Identities=21% Similarity=0.291 Sum_probs=251.0
Q ss_pred ceeeeEEecCCCCcEEEEEEcC-CCCEEEEEECCCcEEEEECCC-CcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcE
Q psy9598 465 NLRQHYVNLGHLSAVFCVLFDK-LGEVIVTGADDLLIKLWRARD-GKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTI 542 (1915)
Q Consensus 465 ~~~~~~~l~gH~~~V~~vafsp-dg~~LaTGs~Dg~I~IWd~~t-g~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtI 542 (1915)
.-++++++.||+..|+++.|.| .+.+|++|+.|+.|+||++.. +.++++|.||..+|.+++|+.+|..++|+|.|+.|
T Consensus 203 Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~l 282 (503)
T KOG0282|consen 203 PKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFL 282 (503)
T ss_pred cHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceee
Confidence 3455678899999999999999 899999999999999999877 89999999999999999999999999999999999
Q ss_pred EEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceE
Q psy9598 543 RIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHIL 622 (1915)
Q Consensus 543 rVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~ 622 (1915)
++||++||+++..+. ....++|+.|+|+. .+.+++|+.|+.|+.||++++..+.... .|-+.|.
T Consensus 283 KlwDtETG~~~~~f~-~~~~~~cvkf~pd~---~n~fl~G~sd~ki~~wDiRs~kvvqeYd------------~hLg~i~ 346 (503)
T KOG0282|consen 283 KLWDTETGQVLSRFH-LDKVPTCVKFHPDN---QNIFLVGGSDKKIRQWDIRSGKVVQEYD------------RHLGAIL 346 (503)
T ss_pred eeeccccceEEEEEe-cCCCceeeecCCCC---CcEEEEecCCCcEEEEeccchHHHHHHH------------hhhhhee
Confidence 999999999999885 24567999999953 5899999999999999999997544433 3457899
Q ss_pred EEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeee
Q psy9598 623 CSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRL 702 (1915)
Q Consensus 623 ~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~ 702 (1915)
.+.|-++|..+++.+.|++|+||+.+..-....+. ..+...+.+|..+|++.+|++-+.|..|.||.+...-. +
T Consensus 347 ~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~--~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r----~ 420 (503)
T KOG0282|consen 347 DITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIA--DPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFR----L 420 (503)
T ss_pred eeEEccCCceEeeeccCccEEEEEcCCCccchhhc--chhhccCcceecCCCCCeehhhccCceEEEEecccccc----c
Confidence 99999999999999999999999984332222222 22334567889999999999999999999997542110 0
Q ss_pred cccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEE
Q psy9598 703 DMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLS 782 (1915)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaS 782 (1915)
.. ..........+.-..|.|||||.+|++|.+ ||.+.+||..+.+++..+++|.+.+..+.|||.....+||
T Consensus 421 nk-------kK~feGh~vaGys~~v~fSpDG~~l~SGds-dG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat 492 (503)
T KOG0282|consen 421 NK-------KKRFEGHSVAGYSCQVDFSPDGRTLCSGDS-DGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVAT 492 (503)
T ss_pred CH-------hhhhcceeccCceeeEEEcCCCCeEEeecC-CccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEe
Confidence 00 000111112345567899999999999999 9999999999999999999999999999999988899999
Q ss_pred EecCceEEEEE
Q psy9598 783 AGHDGLIIIWD 793 (1915)
Q Consensus 783 gs~DG~I~IWd 793 (1915)
||.||.|+||+
T Consensus 493 ~~w~G~Ikiwd 503 (503)
T KOG0282|consen 493 CGWDGLIKIWD 503 (503)
T ss_pred cccCceeEecC
Confidence 99999999996
|
|
| >KOG0306|consensus | Back alignment and domain information |
|---|
Probab=99.98 E-value=7.2e-30 Score=307.07 Aligned_cols=400 Identities=18% Similarity=0.262 Sum_probs=315.5
Q ss_pred CccccccCCCeEEEecccCCceeeeEEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEE
Q psy9598 445 SREYSGPLSRSLMISSHKYSNLRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDI 524 (1915)
Q Consensus 445 ~r~~tg~~d~~~~i~~~~~~~~~~~~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~L 524 (1915)
||.++++..-.+.+|+.....+.....+..-...|+|+.-+++.-+||+|-.||.|+||+..++..+.++.||...|++|
T Consensus 34 Gr~va~~a~E~vn~WdlRtge~~~~l~~~~~k~evt~l~~~~d~l~lAVGYaDGsVqif~~~s~~~~~tfngHK~AVt~l 113 (888)
T KOG0306|consen 34 GRAVAVSALEQVNIWDLRTGEIEKKLILLKKKAEVTCLRSSDDILLLAVGYADGSVQIFSLESEEILITFNGHKAAVTTL 113 (888)
T ss_pred CcEEEEeccccEeEEeeecchhhhhhhhhcccceEEEeeccCCcceEEEEecCceEEeeccCCCceeeeecccccceEEE
Confidence 77788878888899987766444444444555799999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceec
Q psy9598 525 AIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVF 604 (1915)
Q Consensus 525 afspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~ 604 (1915)
.|+..|..|||||.|+.|.|||+-.-.-+..+.||...|+..-|.. +..+|+++|.|+.|++||+.+..+..+...
T Consensus 114 ~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~----~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd 189 (888)
T KOG0306|consen 114 KFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLN----GDSFLVSVSKDSMIKFWDLETQHCFETHVD 189 (888)
T ss_pred EEcccCceEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccC----CCeEEEEeccCceEEEEecccceeeeEEec
Confidence 9999999999999999999999988788899999999999999986 348999999999999999998876554443
Q ss_pred cCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEe-------------------------------------
Q psy9598 605 HEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKM------------------------------------- 647 (1915)
Q Consensus 605 ~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl------------------------------------- 647 (1915)
|.+.++.+++.+ +.+++++.|+.++||++
T Consensus 190 ------------~r~Eiw~l~~~~--~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s 255 (888)
T KOG0306|consen 190 ------------HRGEIWALVLDE--KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFS 255 (888)
T ss_pred ------------ccceEEEEEEec--ceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCc
Confidence 345566666655 45666666666666665
Q ss_pred --------------------------------------------------------------------------------
Q psy9598 648 -------------------------------------------------------------------------------- 647 (1915)
Q Consensus 648 -------------------------------------------------------------------------------- 647 (1915)
T Consensus 256 ~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~ 335 (888)
T KOG0306|consen 256 DRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTE 335 (888)
T ss_pred ccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcc
Confidence
Q ss_pred ----------------cCCCC--C----ceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeeccc
Q psy9598 648 ----------------DGVDS--P----LGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMN 705 (1915)
Q Consensus 648 ----------------~~~~~--~----~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~ 705 (1915)
..... + .....+.+|...|.++++|.+...++|| ..+.|+||+..+.+++...
T Consensus 336 ~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sg-a~~SikiWn~~t~kciRTi---- 410 (888)
T KOG0306|consen 336 NTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASG-AGESIKIWNRDTLKCIRTI---- 410 (888)
T ss_pred eeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeec-CCCcEEEEEccCcceeEEe----
Confidence 10000 0 0013456788899999999887666665 5578999999998877643
Q ss_pred ccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEEec
Q psy9598 706 TCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGH 785 (1915)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~ 785 (1915)
....+.+..|-|.++++++|.. .|.+.|||+.+..++-++.+|.+.|++++.+| |+..++|||.
T Consensus 411 --------------~~~y~l~~~Fvpgd~~Iv~G~k-~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~p-D~~g~vT~sa 474 (888)
T KOG0306|consen 411 --------------TCGYILASKFVPGDRYIVLGTK-NGELQVFDLASASLVETIRAHDGAIWSISLSP-DNKGFVTGSA 474 (888)
T ss_pred --------------ccccEEEEEecCCCceEEEecc-CCceEEEEeehhhhhhhhhccccceeeeeecC-CCCceEEecC
Confidence 2337888999999999999998 99999999999999999999999999999999 9999999999
Q ss_pred CceEEEEECCCC-----ccccceeeeeeecCCCCcceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcccccC-----CC-
Q psy9598 786 DGLIIIWDILSS-----KQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGGFKRPQNI-----PR- 854 (1915)
Q Consensus 786 DG~I~IWdl~s~-----~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl~s~~~~~~l-----~~- 854 (1915)
|.+|++||..-- .......+.....-.-...|.|+.+||||.+||++--|.+|.||-+++-+.+.++ |.
T Consensus 475 DktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~ 554 (888)
T KOG0306|consen 475 DKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVL 554 (888)
T ss_pred CcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeeccccccee
Confidence 999999997421 1100111110001112357999999999999999999999999999998766444 33
Q ss_pred ceeecCCCCeeeecCC-CccceeecccCCC
Q psy9598 855 ELFFHTDYRTLNRPNG-LFEPTYDEVTNLP 883 (1915)
Q Consensus 855 ~~~F~~d~~~Lv~~~~-~~~~v~D~~t~~~ 883 (1915)
.+-.++|+..++..+. -.+.+|-..=+++
T Consensus 555 smDIS~DSklivTgSADKnVKiWGLdFGDC 584 (888)
T KOG0306|consen 555 SMDISPDSKLIVTGSADKNVKIWGLDFGDC 584 (888)
T ss_pred EEeccCCcCeEEeccCCCceEEeccccchh
Confidence 6778899999986553 3367887655543
|
|
| >KOG0281|consensus | Back alignment and domain information |
|---|
Probab=99.98 E-value=4e-32 Score=300.12 Aligned_cols=277 Identities=25% Similarity=0.482 Sum_probs=242.2
Q ss_pred CCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEE
Q psy9598 475 HLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPIS 554 (1915)
Q Consensus 475 H~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~ 554 (1915)
...+|+|+.++ ...+++|..|.+|+|||..+..++..+.||++.|.||.|. .+.|++||.|.+|+|||+++|+++.
T Consensus 196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~ 271 (499)
T KOG0281|consen 196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLN 271 (499)
T ss_pred cCCceEEEEec--chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhh
Confidence 45789999998 5689999999999999999999999999999999999985 4599999999999999999999999
Q ss_pred EeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEE
Q psy9598 555 VLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLA 634 (1915)
Q Consensus 555 ~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~La 634 (1915)
++.+|...|..+.|+. .+++++|.|.+|.+||+.....+ .....+.+|...|+.+.|+. ++|+
T Consensus 272 tlihHceaVLhlrf~n------g~mvtcSkDrsiaVWdm~sps~i---------t~rrVLvGHrAaVNvVdfd~--kyIV 334 (499)
T KOG0281|consen 272 TLIHHCEAVLHLRFSN------GYMVTCSKDRSIAVWDMASPTDI---------TLRRVLVGHRAAVNVVDFDD--KYIV 334 (499)
T ss_pred HHhhhcceeEEEEEeC------CEEEEecCCceeEEEeccCchHH---------HHHHHHhhhhhheeeecccc--ceEE
Confidence 9999999999999986 79999999999999999876422 23344567889999999965 4999
Q ss_pred EEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccc
Q psy9598 635 TGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKET 714 (1915)
Q Consensus 635 sgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~ 714 (1915)
+++.|.+|++|++ .+...+.++.+|...|.|+++ .|+++++||.|.+|++||+..|.+..
T Consensus 335 sASgDRTikvW~~---st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLR--------------- 394 (499)
T KOG0281|consen 335 SASGDRTIKVWST---STCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLR--------------- 394 (499)
T ss_pred EecCCceEEEEec---cceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHH---------------
Confidence 9999999999999 566778889999999999987 58899999999999999999988554
Q ss_pred cccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCc---------eEEEeeCCCCCeEEEEEccCCCCEEEEEec
Q psy9598 715 SDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGD---------LVQVLKGHTNEVFVLESHPFDSRVLLSAGH 785 (1915)
Q Consensus 715 ~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~---------~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~ 785 (1915)
...+|..-|.|+.|+ ...|++|+. ||.|+|||+.++. |+.++..|++.|+.+.|. ...++++++
T Consensus 395 -vLeGHEeLvRciRFd--~krIVSGaY-DGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD---~fqIvsssH 467 (499)
T KOG0281|consen 395 -VLEGHEELVRCIRFD--NKRIVSGAY-DGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD---EFQIISSSH 467 (499)
T ss_pred -HHhchHHhhhheeec--Cceeeeccc-cceEEEEecccccCCcccccchHHHhhhhccceeEEEeec---ceEEEeccC
Confidence 234678889999995 677888887 9999999998653 556677899999999994 488999999
Q ss_pred CceEEEEECCCCcc
Q psy9598 786 DGLIIIWDILSSKQ 799 (1915)
Q Consensus 786 DG~I~IWdl~s~~~ 799 (1915)
|.+|.|||+..+-.
T Consensus 468 ddtILiWdFl~~~~ 481 (499)
T KOG0281|consen 468 DDTILIWDFLNGPP 481 (499)
T ss_pred CCeEEEEEcCCCCc
Confidence 99999999987755
|
|
| >KOG0263|consensus | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.1e-30 Score=319.70 Aligned_cols=247 Identities=20% Similarity=0.357 Sum_probs=217.7
Q ss_pred EecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCC-------------------------------CcEEEEEeCCCC
Q psy9598 471 VNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARD-------------------------------GKLLATLRGCSG 519 (1915)
Q Consensus 471 ~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~t-------------------------------g~~~~~l~gH~~ 519 (1915)
++.--...|+|+.|++++.+||.|..|..|++|.+.. +....++.||++
T Consensus 373 T~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~G 452 (707)
T KOG0263|consen 373 TFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSG 452 (707)
T ss_pred EEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCC
Confidence 3333447899999999999999999999999999762 113456889999
Q ss_pred CEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccc
Q psy9598 520 EISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDI 599 (1915)
Q Consensus 520 ~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~ 599 (1915)
+|..+.|+|+.++|+++|.|++||+|.+.+..++..+.||..+|+++.|+|. |.++||||.|++.++|.......+
T Consensus 453 PVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~----GyYFatas~D~tArLWs~d~~~Pl 528 (707)
T KOG0263|consen 453 PVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPR----GYYFATASHDQTARLWSTDHNKPL 528 (707)
T ss_pred ceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCC----ceEEEecCCCceeeeeecccCCch
Confidence 9999999999999999999999999999999999999999999999999995 499999999999999987664322
Q ss_pred cceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEE
Q psy9598 600 SKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFV 679 (1915)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~ 679 (1915)
..+.+|.+.|.|+.|+|+..++++|+.|.+|++||+ ..+..+..+.||.++|.+|+|||+|.+|+
T Consensus 529 ------------RifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv---~~G~~VRiF~GH~~~V~al~~Sp~Gr~La 593 (707)
T KOG0263|consen 529 ------------RIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDV---STGNSVRIFTGHKGPVTALAFSPCGRYLA 593 (707)
T ss_pred ------------hhhcccccccceEEECCcccccccCCCCceEEEEEc---CCCcEEEEecCCCCceEEEEEcCCCceEe
Confidence 233467799999999999999999999999999999 44556778899999999999999999999
Q ss_pred EEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCC
Q psy9598 680 SGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFN 753 (1915)
Q Consensus 680 sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~t 753 (1915)
+|+.||.|.|||+.++..+ ....+|.+.|.++.|+.+|..|++++. |++|++||+..
T Consensus 594 Sg~ed~~I~iWDl~~~~~v----------------~~l~~Ht~ti~SlsFS~dg~vLasgg~-DnsV~lWD~~~ 650 (707)
T KOG0263|consen 594 SGDEDGLIKIWDLANGSLV----------------KQLKGHTGTIYSLSFSRDGNVLASGGA-DNSVRLWDLTK 650 (707)
T ss_pred ecccCCcEEEEEcCCCcch----------------hhhhcccCceeEEEEecCCCEEEecCC-CCeEEEEEchh
Confidence 9999999999999987632 234567899999999999999999999 99999999854
|
|
| >KOG0273|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.1e-30 Score=297.23 Aligned_cols=310 Identities=22% Similarity=0.327 Sum_probs=263.8
Q ss_pred ccccccCCCeEEEecccC--Cceeee------EEecCC----CCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEE
Q psy9598 446 REYSGPLSRSLMISSHKY--SNLRQH------YVNLGH----LSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLAT 513 (1915)
Q Consensus 446 r~~tg~~d~~~~i~~~~~--~~~~~~------~~l~gH----~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~ 513 (1915)
-...|+.+-+.++|.... .....+ ..+.|+ +..|+|++|+.+|.+||||+.||.++||+. +|.++.+
T Consensus 193 llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~-~G~l~~t 271 (524)
T KOG0273|consen 193 LLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSEDGEARIWNK-DGNLIST 271 (524)
T ss_pred hhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeecCcEEEEEec-Cchhhhh
Confidence 344567777777776542 111111 111233 257999999999999999999999999996 7889999
Q ss_pred EeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEec
Q psy9598 514 LRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKY 593 (1915)
Q Consensus 514 l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl 593 (1915)
|..|.++|.+|.|+..|++|++|+.|+++.|||..+|.....+.-|..+-..|.|-. ...+++++.||.|+++.+
T Consensus 272 l~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~-----~~~F~ts~td~~i~V~kv 346 (524)
T KOG0273|consen 272 LGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQS-----NDEFATSSTDGCIHVCKV 346 (524)
T ss_pred hhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEec-----CceEeecCCCceEEEEEe
Confidence 999999999999999999999999999999999999999999998998877888875 368999999999999988
Q ss_pred ccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcC
Q psy9598 594 KLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSH 673 (1915)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fsp 673 (1915)
.......+ +.+|.+.|.++.|+|.|.+|++++.|++++||.+ ........+.+|...|..+.|+|
T Consensus 347 ~~~~P~~t------------~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~---~~~~~~~~l~~Hskei~t~~wsp 411 (524)
T KOG0273|consen 347 GEDRPVKT------------FIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSM---GQSNSVHDLQAHSKEIYTIKWSP 411 (524)
T ss_pred cCCCccee------------eecccCceEEEEECCCCceEEEecCCCeeEeeec---CCCcchhhhhhhccceeeEeecC
Confidence 76543322 3357899999999999999999999999999998 34456677899999999999999
Q ss_pred CC---------CEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCC
Q psy9598 674 SH---------LRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNF 744 (1915)
Q Consensus 674 dg---------~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg 744 (1915)
.| ..+++++.|++|++||+..+.++.. +..|..+|.+|+|+|+|+++++|+. ||
T Consensus 412 ~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~----------------f~kH~~pVysvafS~~g~ylAsGs~-dg 474 (524)
T KOG0273|consen 412 TGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHT----------------LMKHQEPVYSVAFSPNGRYLASGSL-DG 474 (524)
T ss_pred CCCccCCCcCCceEEEeecCCeEEEEEccCCceeEe----------------eccCCCceEEEEecCCCcEEEecCC-CC
Confidence 75 4799999999999999999886653 3458889999999999999999998 99
Q ss_pred eEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECC
Q psy9598 745 QIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDIL 795 (1915)
Q Consensus 745 ~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~ 795 (1915)
.|.+|+..++++++.+.+.. .|+.|+|+- +|.+|..+-.||.+++-|++
T Consensus 475 ~V~iws~~~~~l~~s~~~~~-~Ifel~Wn~-~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 475 CVHIWSTKTGKLVKSYQGTG-GIFELCWNA-AGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred eeEeccccchheeEeecCCC-eEEEEEEcC-CCCEEEEEecCCCceEEEec
Confidence 99999999999999998655 499999998 88999999999999999874
|
|
| >KOG0296|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.4e-30 Score=288.45 Aligned_cols=309 Identities=20% Similarity=0.273 Sum_probs=262.8
Q ss_pred cccccCCCeEEEecccCCceeeeEEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEE
Q psy9598 447 EYSGPLSRSLMISSHKYSNLRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAI 526 (1915)
Q Consensus 447 ~~tg~~d~~~~i~~~~~~~~~~~~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Laf 526 (1915)
..+|+.|....+|...... ....+.||..+|+|+.|+.+|.+||||..+|.|+||...++.....+....+.|.-|.|
T Consensus 79 ~aTGGgDD~AflW~~~~ge--~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~W 156 (399)
T KOG0296|consen 79 VATGGGDDLAFLWDISTGE--FAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKW 156 (399)
T ss_pred EEecCCCceEEEEEccCCc--ceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEe
Confidence 4578899999999876665 56789999999999999999999999999999999999999999998777788999999
Q ss_pred eCCCCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccC
Q psy9598 527 DNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHE 606 (1915)
Q Consensus 527 spdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~ 606 (1915)
+|.+.+|++|+.||.|.+|.+.++.....+.||..++++=.|.|+ |..++++..||+|++|++.++..+......
T Consensus 157 Hp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pd----GKr~~tgy~dgti~~Wn~ktg~p~~~~~~~- 231 (399)
T KOG0296|consen 157 HPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPD----GKRILTGYDDGTIIVWNPKTGQPLHKITQA- 231 (399)
T ss_pred cccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCC----CceEEEEecCceEEEEecCCCceeEEeccc-
Confidence 999999999999999999999998889999999999999999994 599999999999999999999655444322
Q ss_pred ccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEe--------ccCCCCeeEEE---EcCCC
Q psy9598 607 PVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEV--------EEHSDKVDSIQ---WSHSH 675 (1915)
Q Consensus 607 ~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l--------~~h~~~V~sl~---fspdg 675 (1915)
......|+.++..+..++.|+.++.+++-+... ...+... ..+...+.||. |+..-
T Consensus 232 ----------e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~s---gKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~l 298 (399)
T KOG0296|consen 232 ----------EGLELPCISLNLAGSTLTKGNSEGVACGVNNGS---GKVVNCNNGTVPELKPSQEELDESVESIPSSSKL 298 (399)
T ss_pred ----------ccCcCCccccccccceeEeccCCccEEEEcccc---ceEEEecCCCCccccccchhhhhhhhhccccccc
Confidence 124567889999999999999998888877522 2222222 23444455554 44455
Q ss_pred CEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCc
Q psy9598 676 LRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGD 755 (1915)
Q Consensus 676 ~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~ 755 (1915)
.++++|+.||+|.|||+.....+.+ ..|...|+.+.|.+ ..+|++++. +|.|++||.++|+
T Consensus 299 pL~A~G~vdG~i~iyD~a~~~~R~~-----------------c~he~~V~~l~w~~-t~~l~t~c~-~g~v~~wDaRtG~ 359 (399)
T KOG0296|consen 299 PLAACGSVDGTIAIYDLAASTLRHI-----------------CEHEDGVTKLKWLN-TDYLLTACA-NGKVRQWDARTGQ 359 (399)
T ss_pred chhhcccccceEEEEecccchhhee-----------------ccCCCceEEEEEcC-cchheeecc-CceEEeeeccccc
Confidence 6889999999999999987764432 23667799999999 889999998 9999999999999
Q ss_pred eEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECC
Q psy9598 756 LVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDIL 795 (1915)
Q Consensus 756 ~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~ 795 (1915)
++.++.||...|.+++++| +.++++|+|.|++.+||++.
T Consensus 360 l~~~y~GH~~~Il~f~ls~-~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 360 LKFTYTGHQMGILDFALSP-QKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred eEEEEecCchheeEEEEcC-CCcEEEEecCCCeEEEEecC
Confidence 9999999999999999999 99999999999999999874
|
|
| >KOG0284|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-31 Score=303.02 Aligned_cols=285 Identities=17% Similarity=0.292 Sum_probs=248.5
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCc
Q psy9598 518 SGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDI 597 (1915)
Q Consensus 518 ~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~ 597 (1915)
...|..|.|.|+|+.|++|+..|.+.+|+..+...-..++.|...|.++.|++ ++.++++|+.+|.|++|+..-..
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~----~g~wmiSgD~gG~iKyWqpnmnn 171 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSH----NGTWMISGDKGGMIKYWQPNMNN 171 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEcc----CCCEEEEcCCCceEEecccchhh
Confidence 45799999999999999999999999999877666667789999999999998 45999999999999999876442
Q ss_pred cccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCE
Q psy9598 598 DISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLR 677 (1915)
Q Consensus 598 ~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~ 677 (1915)
... ....|...|.|++|+|+...+++++.||+|+|||... +..-..+.+|.-.|.++.|+|...+
T Consensus 172 Vk~------------~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~---~kee~vL~GHgwdVksvdWHP~kgL 236 (464)
T KOG0284|consen 172 VKI------------IQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRM---PKEERVLRGHGWDVKSVDWHPTKGL 236 (464)
T ss_pred hHH------------hhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccC---CchhheeccCCCCcceeccCCccce
Confidence 110 1113448899999999999999999999999999843 3333456899999999999999999
Q ss_pred EEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceE
Q psy9598 678 FVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLV 757 (1915)
Q Consensus 678 L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i 757 (1915)
|++||.|..|++||.+++.|+. ....|...|..+.|++++.+|++++. |..++++|+++.+.+
T Consensus 237 iasgskDnlVKlWDprSg~cl~----------------tlh~HKntVl~~~f~~n~N~Llt~sk-D~~~kv~DiR~mkEl 299 (464)
T KOG0284|consen 237 IASGSKDNLVKLWDPRSGSCLA----------------TLHGHKNTVLAVKFNPNGNWLLTGSK-DQSCKVFDIRTMKEL 299 (464)
T ss_pred eEEccCCceeEeecCCCcchhh----------------hhhhccceEEEEEEcCCCCeeEEccC-CceEEEEehhHhHHH
Confidence 9999999999999999998654 24468899999999999999999998 999999999999999
Q ss_pred EEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEEeCCCe
Q psy9598 758 QVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGH 837 (1915)
Q Consensus 758 ~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~dG~ 837 (1915)
.++++|...|+++.|||....+|++||.||.|..|.+....+ +.. +...|.+.|++++|+|=|.+||+|+.|.+
T Consensus 300 ~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p--~~~----i~~AHd~~iwsl~~hPlGhil~tgsnd~t 373 (464)
T KOG0284|consen 300 FTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEP--LGE----IPPAHDGEIWSLAYHPLGHILATGSNDRT 373 (464)
T ss_pred HHhhcchhhheeeccccccccceeeccCCCceEEEecccccc--ccC----CCcccccceeeeeccccceeEeecCCCcc
Confidence 999999999999999999999999999999999999985555 222 33467789999999999999999999999
Q ss_pred EEEEeCC
Q psy9598 838 LLVYGLG 844 (1915)
Q Consensus 838 I~Iwdl~ 844 (1915)
+++|.-.
T Consensus 374 ~rfw~r~ 380 (464)
T KOG0284|consen 374 VRFWTRN 380 (464)
T ss_pred eeeeccC
Confidence 9999744
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-29 Score=298.25 Aligned_cols=287 Identities=31% Similarity=0.526 Sum_probs=251.8
Q ss_pred EEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCC
Q psy9598 470 YVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQT 549 (1915)
Q Consensus 470 ~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~t 549 (1915)
.+|.+|.+.|+|++|+|++.+|++|+.||.|.+|++.++.....+.+|...|.++.|++++.+|++++.||.|++|++.+
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~ 82 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLET 82 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCc
Confidence 46779999999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred CceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCC
Q psy9598 550 LAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPG 629 (1915)
Q Consensus 550 g~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspd 629 (1915)
+..+..+..|...|.++.|++. +.++++++.+|.|.+||+.++.....+ ..|...+.+++|+|+
T Consensus 83 ~~~~~~~~~~~~~i~~~~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~~~~------------~~~~~~i~~~~~~~~ 146 (289)
T cd00200 83 GECVRTLTGHTSYVSSVAFSPD----GRILSSSSRDKTIKVWDVETGKCLTTL------------RGHTDWVNSVAFSPD 146 (289)
T ss_pred ccceEEEeccCCcEEEEEEcCC----CCEEEEecCCCeEEEEECCCcEEEEEe------------ccCCCcEEEEEEcCc
Confidence 8889999999999999999984 478888888999999999865432221 245678999999999
Q ss_pred CcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCC
Q psy9598 630 GLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLP 709 (1915)
Q Consensus 630 g~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~ 709 (1915)
+.+|++++.+|.|++||+.. ...+..+..|...|.+++|++++..|++++.||.|++||+..+.....
T Consensus 147 ~~~l~~~~~~~~i~i~d~~~---~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~--------- 214 (289)
T cd00200 147 GTFVASSSQDGTIKLWDLRT---GKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGT--------- 214 (289)
T ss_pred CCEEEEEcCCCcEEEEEccc---cccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecc---------
Confidence 99999888899999999942 344556678888999999999999999999999999999987653321
Q ss_pred CCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceE
Q psy9598 710 HTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLI 789 (1915)
Q Consensus 710 ~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I 789 (1915)
...+...+.+++|++++.++++++. +|.|++|++.++..+..+.+|...|.+++|++ ++.+|++++.||.|
T Consensus 215 -------~~~~~~~i~~~~~~~~~~~~~~~~~-~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i 285 (289)
T cd00200 215 -------LRGHENGVNSVAFSPDGYLLASGSE-DGTIRVWDLRTGECVQTLSGHTNSVTSLAWSP-DGKRLASGSADGTI 285 (289)
T ss_pred -------hhhcCCceEEEEEcCCCcEEEEEcC-CCcEEEEEcCCceeEEEccccCCcEEEEEECC-CCCEEEEecCCCeE
Confidence 1135568999999999888888876 99999999999999999999999999999999 88999999999999
Q ss_pred EEEE
Q psy9598 790 IIWD 793 (1915)
Q Consensus 790 ~IWd 793 (1915)
++|+
T Consensus 286 ~iw~ 289 (289)
T cd00200 286 RIWD 289 (289)
T ss_pred EecC
Confidence 9996
|
|
| >KOG0284|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-31 Score=301.11 Aligned_cols=283 Identities=17% Similarity=0.314 Sum_probs=244.3
Q ss_pred CCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEE
Q psy9598 476 LSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISV 555 (1915)
Q Consensus 476 ~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~ 555 (1915)
..+|..|.|.|+|+.|+||+..|.+.+|+..+...-..+..|...|.++.|+++|.+++||+.+|.|++|+..-. .+..
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmn-nVk~ 174 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMN-NVKI 174 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchh-hhHH
Confidence 468999999999999999999999999998665555567899999999999999999999999999999998643 3445
Q ss_pred eecC-CCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEE
Q psy9598 556 LVGH-QGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLA 634 (1915)
Q Consensus 556 l~~h-~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~La 634 (1915)
+.+| ...|.+++|+|.. ..|++||.||+|+|||....... ..+.+|.-.|.|+.|+|...+|+
T Consensus 175 ~~ahh~eaIRdlafSpnD----skF~t~SdDg~ikiWdf~~~kee------------~vL~GHgwdVksvdWHP~kgLia 238 (464)
T KOG0284|consen 175 IQAHHAEAIRDLAFSPND----SKFLTCSDDGTIKIWDFRMPKEE------------RVLRGHGWDVKSVDWHPTKGLIA 238 (464)
T ss_pred hhHhhhhhhheeccCCCC----ceeEEecCCCeEEEEeccCCchh------------heeccCCCCcceeccCCccceeE
Confidence 5554 4899999999943 79999999999999998765432 22357788999999999999999
Q ss_pred EEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccc
Q psy9598 635 TGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKET 714 (1915)
Q Consensus 635 sgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~ 714 (1915)
+||.|..|++||. .+..++.++.+|...|..+.|++++++|+++|.|..++++|+++.+- .
T Consensus 239 sgskDnlVKlWDp---rSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkE----------------l 299 (464)
T KOG0284|consen 239 SGSKDNLVKLWDP---RSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKE----------------L 299 (464)
T ss_pred EccCCceeEeecC---CCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHH----------------H
Confidence 9999999999998 55678889999999999999999999999999999999999985541 1
Q ss_pred cccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEee-CCCCCeEEEEEccCCCCEEEEEecCceEEEEE
Q psy9598 715 SDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLK-GHTNEVFVLESHPFDSRVLLSAGHDGLIIIWD 793 (1915)
Q Consensus 715 ~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~-gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWd 793 (1915)
....+|...|++++|+|-..-|++.+..||.|..|.+...+++..+. +|...|++++||| -|.+|++|+.|.++++|.
T Consensus 300 ~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hP-lGhil~tgsnd~t~rfw~ 378 (464)
T KOG0284|consen 300 FTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHP-LGHILATGSNDRTVRFWT 378 (464)
T ss_pred HHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccc-cceeEeecCCCcceeeec
Confidence 23456889999999999877766666669999999998666666554 8999999999999 999999999999999997
Q ss_pred CC
Q psy9598 794 IL 795 (1915)
Q Consensus 794 l~ 795 (1915)
-.
T Consensus 379 r~ 380 (464)
T KOG0284|consen 379 RN 380 (464)
T ss_pred cC
Confidence 53
|
|
| >KOG0276|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-29 Score=296.93 Aligned_cols=288 Identities=17% Similarity=0.275 Sum_probs=257.5
Q ss_pred eeEEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEEC
Q psy9598 468 QHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNL 547 (1915)
Q Consensus 468 ~~~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl 547 (1915)
..+.+..|+..|-||.|+|...+++++-..|.|.|||..+...+.+|.-..-+|.+..|-...+++++|+.|..|+||+.
T Consensus 5 ~krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfny 84 (794)
T KOG0276|consen 5 FKRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNY 84 (794)
T ss_pred hhhHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEec
Confidence 34567779999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEEC
Q psy9598 548 QTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFS 627 (1915)
Q Consensus 548 ~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs 627 (1915)
.|+..+..|..|.+-|.||+.+|.. .+++++|.|-+|++||+...-. ....+.+|...|.+++|+
T Consensus 85 nt~ekV~~FeAH~DyIR~iavHPt~----P~vLtsSDDm~iKlW~we~~wa-----------~~qtfeGH~HyVMqv~fn 149 (794)
T KOG0276|consen 85 NTGEKVKTFEAHSDYIRSIAVHPTL----PYVLTSSDDMTIKLWDWENEWA-----------CEQTFEGHEHYVMQVAFN 149 (794)
T ss_pred ccceeeEEeeccccceeeeeecCCC----CeEEecCCccEEEEeeccCcee-----------eeeEEcCcceEEEEEEec
Confidence 9999999999999999999999965 7999999999999999986532 223455788999999999
Q ss_pred C-CCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCC--CEEEEEeCCCcEEEEEccCCceEEeeecc
Q psy9598 628 P-GGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSH--LRFVSGSRDGTALIWYYKCSQWRFIRLDM 704 (1915)
Q Consensus 628 p-dg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg--~~L~sgs~DG~I~IWDl~~~~~~~~~~~~ 704 (1915)
| |.+.+|+++-|++|+||.+ +.+.+.+++.+|...|+||.|-+.| .+|+||+.|.+|+|||+++..|+.
T Consensus 150 PkD~ntFaS~sLDrTVKVWsl---gs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~----- 221 (794)
T KOG0276|consen 150 PKDPNTFASASLDRTVKVWSL---GSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQ----- 221 (794)
T ss_pred CCCccceeeeeccccEEEEEc---CCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHH-----
Confidence 9 5678999999999999999 5667788899999999999998766 499999999999999999887553
Q ss_pred cccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEEe
Q psy9598 705 NTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAG 784 (1915)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs 784 (1915)
...+|...|..++|+|.-..|++|+. ||+++||+..|.++..++.-.-..|+||+..+ .++.++.|.
T Consensus 222 -----------TLeGHt~Nvs~v~fhp~lpiiisgsE-DGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k-~~~~i~vG~ 288 (794)
T KOG0276|consen 222 -----------TLEGHTNNVSFVFFHPELPIIISGSE-DGTVRIWNSKTYKLEKTLNYGLERVWCIAAHK-GDGKIAVGF 288 (794)
T ss_pred -----------HhhcccccceEEEecCCCcEEEEecC-CccEEEecCcceehhhhhhcCCceEEEEeecC-CCCeEEEec
Confidence 34568899999999999999999998 99999999999998888887778899999988 666788887
Q ss_pred cCceEEE
Q psy9598 785 HDGLIII 791 (1915)
Q Consensus 785 ~DG~I~I 791 (1915)
..|.|.|
T Consensus 289 Deg~i~v 295 (794)
T KOG0276|consen 289 DEGSVTV 295 (794)
T ss_pred cCCcEEE
Confidence 7776643
|
|
| >KOG0292|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-29 Score=307.11 Aligned_cols=340 Identities=20% Similarity=0.352 Sum_probs=277.0
Q ss_pred ecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCc
Q psy9598 472 NLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLA 551 (1915)
Q Consensus 472 l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~ 551 (1915)
+...+..|-.++|+|...+|+++-..|.|.+||..-+.++..|..|.++|..|+|+|++.+++||+.|..|+||+..+.+
T Consensus 5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rr 84 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRR 84 (1202)
T ss_pred hhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccce
Confidence 44567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCc
Q psy9598 552 PISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGL 631 (1915)
Q Consensus 552 ~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~ 631 (1915)
|+.++.||-+.|..+.|++.- .+++++|.|.||+||++.+..++..+. +|...|.|..|+|...
T Consensus 85 clftL~GHlDYVRt~~FHhey----PWIlSASDDQTIrIWNwqsr~~iavlt------------GHnHYVMcAqFhptED 148 (1202)
T KOG0292|consen 85 CLFTLLGHLDYVRTVFFHHEY----PWILSASDDQTIRIWNWQSRKCIAVLT------------GHNHYVMCAQFHPTED 148 (1202)
T ss_pred ehhhhccccceeEEeeccCCC----ceEEEccCCCeEEEEeccCCceEEEEe------------cCceEEEeeccCCccc
Confidence 999999999999999999854 799999999999999999998766554 5578899999999999
Q ss_pred EEEEEeCCCeEEEEEecCCC--------------------------CCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCC
Q psy9598 632 FLATGSGDHHVRVYKMDGVD--------------------------SPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDG 685 (1915)
Q Consensus 632 ~Lasgs~Dg~I~IwDl~~~~--------------------------~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG 685 (1915)
++++++-|.+|+|||+.+.. ....-+.+.||...|+-++|+|.-.+|+||+.|.
T Consensus 149 lIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDR 228 (1202)
T KOG0292|consen 149 LIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDR 228 (1202)
T ss_pred eEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcc
Confidence 99999999999999996321 0112245789999999999999999999999999
Q ss_pred cEEEEEccCCc-eEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCC
Q psy9598 686 TALIWYYKCSQ-WRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHT 764 (1915)
Q Consensus 686 ~I~IWDl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~ 764 (1915)
.|++|.+...+ |. .....+|.+.|.++-|+|....|++.+. |++|+|||+.....++++....
T Consensus 229 qVKlWrmnetKaWE---------------vDtcrgH~nnVssvlfhp~q~lIlSnsE-DksirVwDm~kRt~v~tfrren 292 (1202)
T KOG0292|consen 229 QVKLWRMNETKAWE---------------VDTCRGHYNNVSSVLFHPHQDLILSNSE-DKSIRVWDMTKRTSVQTFRREN 292 (1202)
T ss_pred eeeEEEecccccee---------------ehhhhcccCCcceEEecCccceeEecCC-CccEEEEecccccceeeeeccC
Confidence 99999875432 22 1234568899999999999999999988 9999999999999999999888
Q ss_pred CCeEEEEEccCCCCEEEEEecCceEEEEECCCCcc--------------ccceeeee---------ee--cCCCCcceEE
Q psy9598 765 NEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQ--------------RGYKWFHN---------IV--EGQGEGALFD 819 (1915)
Q Consensus 765 ~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~--------------~~~~~~~~---------~~--~~~~~~~V~~ 819 (1915)
+..+.|+.|| ..++++ +|+|+-+.||.+....+ +.+..+.- .+ .+....++.+
T Consensus 293 dRFW~laahP-~lNLfA-AgHDsGm~VFkleRErpa~~v~~n~LfYvkd~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~s 370 (1202)
T KOG0292|consen 293 DRFWILAAHP-ELNLFA-AGHDSGMIVFKLERERPAYAVNGNGLFYVKDRFIRSYDLRTQKDTAVASLRRPGTLWQPPRS 370 (1202)
T ss_pred CeEEEEEecC-Ccceee-eecCCceEEEEEcccCceEEEcCCEEEEEccceEEeeeccccccceeEeccCCCcccCCcce
Confidence 8899999999 777665 55666666777653222 00111100 00 0111357788
Q ss_pred EEEcCCCCEEEEE-e-CCCeEEEEeCCC
Q psy9598 820 GKWSPDGTTCALT-D-SYGHLLVYGLGG 845 (1915)
Q Consensus 820 vafSpdg~~Lasg-~-~dG~I~Iwdl~s 845 (1915)
+.++|..+.+..+ . ..|..-++.+..
T Consensus 371 msYNpae~~vlics~~~n~~y~L~~ipk 398 (1202)
T KOG0292|consen 371 LSYNPAENAVLICSNLDNGEYELVQIPK 398 (1202)
T ss_pred eeeccccCeEEEEeccCCCeEEEEEecC
Confidence 9999966554444 3 345556666553
|
|
| >KOG0295|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-30 Score=289.93 Aligned_cols=291 Identities=19% Similarity=0.283 Sum_probs=257.2
Q ss_pred cEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeE
Q psy9598 509 KLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCI 588 (1915)
Q Consensus 509 ~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI 588 (1915)
.+...+.||..+|+.+-|+|+-.++|+++.|++|++||+.+|++...++||++.|.+|+|+.. |.+|++++.|-.+
T Consensus 99 ~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~----Gk~l~tcSsDl~~ 174 (406)
T KOG0295|consen 99 NLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDAS----GKYLATCSSDLSA 174 (406)
T ss_pred CchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecC----ccEEEecCCccch
Confidence 466677899999999999999999999999999999999999999999999999999999974 4999999999999
Q ss_pred EEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeE
Q psy9598 589 GFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDS 668 (1915)
Q Consensus 589 ~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~s 668 (1915)
++||..+... ......+|...|.+++|-|.|.+|++++.|.+|+.|++ .+..++.++.+|...|..
T Consensus 175 ~LWd~~~~~~-----------c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~---~tg~cv~t~~~h~ewvr~ 240 (406)
T KOG0295|consen 175 KLWDFDTFFR-----------CIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWEC---DTGYCVKTFPGHSEWVRM 240 (406)
T ss_pred hheeHHHHHH-----------HHHHhcCcccceeeEEEEecCCeeeecccccceeEEec---ccceeEEeccCchHhEEE
Confidence 9999875311 11223456788999999999999999999999999999 567889999999999999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCC---------------C
Q psy9598 669 IQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDAS---------------D 733 (1915)
Q Consensus 669 l~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spd---------------g 733 (1915)
+..+.||.++++|+.|.+|++|-+.++++.. ....|...|-+++|-|. +
T Consensus 241 v~v~~DGti~As~s~dqtl~vW~~~t~~~k~----------------~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~ 304 (406)
T KOG0295|consen 241 VRVNQDGTIIASCSNDQTLRVWVVATKQCKA----------------ELREHEHPVECIAWAPESSYPSISEATGSTNGG 304 (406)
T ss_pred EEecCCeeEEEecCCCceEEEEEeccchhhh----------------hhhccccceEEEEecccccCcchhhccCCCCCc
Confidence 9999999999999999999999888876432 23446677777877653 2
Q ss_pred CEEEEEEecCCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCC
Q psy9598 734 RWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQG 813 (1915)
Q Consensus 734 ~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~ 813 (1915)
.++++++. |++|++||+.+|.++.+|.||.+.|..++|+| .|+||+++..|++|+|||+.+.++ ..++. .|
T Consensus 305 ~~l~s~Sr-DktIk~wdv~tg~cL~tL~ghdnwVr~~af~p-~Gkyi~ScaDDktlrvwdl~~~~c--mk~~~-----ah 375 (406)
T KOG0295|consen 305 QVLGSGSR-DKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSP-GGKYILSCADDKTLRVWDLKNLQC--MKTLE-----AH 375 (406)
T ss_pred cEEEeecc-cceEEEEeccCCeEEEEEecccceeeeeEEcC-CCeEEEEEecCCcEEEEEecccee--eeccC-----CC
Confidence 47777777 99999999999999999999999999999999 999999999999999999999988 66655 56
Q ss_pred CcceEEEEEcCCCCEEEEEeCCCeEEEEe
Q psy9598 814 EGALFDGKWSPDGTTCALTDSYGHLLVYG 842 (1915)
Q Consensus 814 ~~~V~~vafSpdg~~Lasg~~dG~I~Iwd 842 (1915)
...|+++.|+.+..++++|+.|..+.+|.
T Consensus 376 ~hfvt~lDfh~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 376 EHFVTSLDFHKTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred cceeEEEecCCCCceEEeccccceeeeee
Confidence 77899999999999999999999999996
|
|
| >KOG0645|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.4e-29 Score=269.88 Aligned_cols=300 Identities=22% Similarity=0.340 Sum_probs=246.5
Q ss_pred cEEEEEeCCCCCEEEEEEeCC-CCEEEEEeCCCcEEEEECCC---CceEEEe-ecCCCCeEEEEeccCccCCCcEEEEEe
Q psy9598 509 KLLATLRGCSGEISDIAIDNR-NILLAAGTVDKTIRIWNLQT---LAPISVL-VGHQGIITGVNFCPLEVNGFNYLASTS 583 (1915)
Q Consensus 509 ~~~~~l~gH~~~I~~Lafspd-g~~LaSgs~DgtIrVWDl~t---g~~~~~l-~~h~~~V~sl~fsp~~~~d~~~L~sgs 583 (1915)
..++.+.||.+.|..++|+|. |..|||||.|+.|+||++.. ..+..++ .+|...|.+++|+|.+ ++|++||
T Consensus 5 ~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g----~~La~aS 80 (312)
T KOG0645|consen 5 ILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHG----RYLASAS 80 (312)
T ss_pred eeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCC----cEEEEee
Confidence 356788999999999999998 89999999999999999985 4455555 3699999999999954 8999999
Q ss_pred CCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCC
Q psy9598 584 TDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHS 663 (1915)
Q Consensus 584 ~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~ 663 (1915)
.|+++.||.-..+. ......+.+|...|.|++|+++|.+||+++.|..|-||.+.......++..+.+|+
T Consensus 81 FD~t~~Iw~k~~~e----------fecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~Ht 150 (312)
T KOG0645|consen 81 FDATVVIWKKEDGE----------FECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHT 150 (312)
T ss_pred ccceEEEeecCCCc----------eeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeecccc
Confidence 99999999755442 12234566889999999999999999999999999999998777788899999999
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCcEEEEEcc-CCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEec
Q psy9598 664 DKVDSIQWSHSHLRFVSGSRDGTALIWYYK-CSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINF 742 (1915)
Q Consensus 664 ~~V~sl~fspdg~~L~sgs~DG~I~IWDl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~ 742 (1915)
..|..+.|+|...+|+++|.|.+|++|.-. ...|... ....+|...|.+++|++.|..|++++.
T Consensus 151 qDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~--------------~tl~g~~~TVW~~~F~~~G~rl~s~sd- 215 (312)
T KOG0645|consen 151 QDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECV--------------QTLDGHENTVWSLAFDNIGSRLVSCSD- 215 (312)
T ss_pred ccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEE--------------EEecCccceEEEEEecCCCceEEEecC-
Confidence 999999999999999999999999999866 4544432 234457779999999999999999998
Q ss_pred CCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEE
Q psy9598 743 NFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKW 822 (1915)
Q Consensus 743 Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vaf 822 (1915)
|++|+||-..+. .-..|...++.+.|. ...|+||+.|+.|+||....+-......+.....+.|...|++++|
T Consensus 216 D~tv~Iw~~~~~----~~~~~sr~~Y~v~W~---~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w 288 (312)
T KOG0645|consen 216 DGTVSIWRLYTD----LSGMHSRALYDVPWD---NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQW 288 (312)
T ss_pred CcceEeeeeccC----cchhcccceEeeeec---ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEE
Confidence 999999986521 112477889999997 3679999999999999876532211111111234456678999999
Q ss_pred cCC-CCEEEEEeCCCeEEEEeCC
Q psy9598 823 SPD-GTTCALTDSYGHLLVYGLG 844 (1915)
Q Consensus 823 Spd-g~~Lasg~~dG~I~Iwdl~ 844 (1915)
.|. .++|++|+.||.|.+|.+.
T Consensus 289 ~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 289 NPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred cCCCCCceeecCCCceEEEEEec
Confidence 995 7899999999999999874
|
|
| >KOG0263|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.4e-30 Score=313.65 Aligned_cols=252 Identities=27% Similarity=0.442 Sum_probs=221.7
Q ss_pred EEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCC-------------------------------CceEEEeecC
Q psy9598 511 LATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQT-------------------------------LAPISVLVGH 559 (1915)
Q Consensus 511 ~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~t-------------------------------g~~~~~l~~h 559 (1915)
..++......++|..|++|+.+||.|..|..|++|.+.. +....++.||
T Consensus 371 ~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH 450 (707)
T KOG0263|consen 371 MYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGH 450 (707)
T ss_pred EEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecC
Confidence 344444456799999999999999999999999998862 1223557899
Q ss_pred CCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCC
Q psy9598 560 QGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGD 639 (1915)
Q Consensus 560 ~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~D 639 (1915)
.++|.++.|+|+ .++|++||.|++|++|.+.+..++.. ..+|..+|+++.|+|-|-++|+|+.|
T Consensus 451 ~GPVyg~sFsPd----~rfLlScSED~svRLWsl~t~s~~V~------------y~GH~~PVwdV~F~P~GyYFatas~D 514 (707)
T KOG0263|consen 451 SGPVYGCSFSPD----RRFLLSCSEDSSVRLWSLDTWSCLVI------------YKGHLAPVWDVQFAPRGYYFATASHD 514 (707)
T ss_pred CCceeeeeeccc----ccceeeccCCcceeeeecccceeEEE------------ecCCCcceeeEEecCCceEEEecCCC
Confidence 999999999995 49999999999999999988754322 23678999999999999999999999
Q ss_pred CeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCcccccccc
Q psy9598 640 HHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETN 719 (1915)
Q Consensus 640 g~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 719 (1915)
++.++|..+. ...+..+.+|-+.|.|+.|+|+..++++||.|.+|++||+.++..+.++ .+
T Consensus 515 ~tArLWs~d~---~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF----------------~G 575 (707)
T KOG0263|consen 515 QTARLWSTDH---NKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIF----------------TG 575 (707)
T ss_pred ceeeeeeccc---CCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEe----------------cC
Confidence 9999999843 4455667899999999999999999999999999999999999866543 46
Q ss_pred ccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCcc
Q psy9598 720 KKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQ 799 (1915)
Q Consensus 720 ~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~ 799 (1915)
|...|.+++|||+|++|++|+. ||.|.+||+.++.++..+.+|++.|++|.|+. +|.+||+||.|.+|++||+.....
T Consensus 576 H~~~V~al~~Sp~Gr~LaSg~e-d~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~-dg~vLasgg~DnsV~lWD~~~~~~ 653 (707)
T KOG0263|consen 576 HKGPVTALAFSPCGRYLASGDE-DGLIKIWDLANGSLVKQLKGHTGTIYSLSFSR-DGNVLASGGADNSVRLWDLTKVIE 653 (707)
T ss_pred CCCceEEEEEcCCCceEeeccc-CCcEEEEEcCCCcchhhhhcccCceeEEEEec-CCCEEEecCCCCeEEEEEchhhcc
Confidence 8999999999999999999999 99999999999999999999999999999999 999999999999999999976444
|
|
| >KOG0266|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-29 Score=320.93 Aligned_cols=295 Identities=27% Similarity=0.435 Sum_probs=253.1
Q ss_pred eEEecCC-CCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCc--EEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEE
Q psy9598 469 HYVNLGH-LSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGK--LLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIW 545 (1915)
Q Consensus 469 ~~~l~gH-~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~--~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVW 545 (1915)
...+.+| ..+|+|+.|+++|++|++++.|+.|++|++.++. ++..+.+|...|.+++|+|++.+|++|+.|++|+||
T Consensus 151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriw 230 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIW 230 (456)
T ss_pred eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEe
Confidence 4455555 8999999999999999999999999999998888 888889999999999999999999999999999999
Q ss_pred EC-CCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEE
Q psy9598 546 NL-QTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCS 624 (1915)
Q Consensus 546 Dl-~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l 624 (1915)
|+ ..+..+.++.+|...|++++|+|.+ +++++|+.|++|+|||+.++.+...+ .+|...|+++
T Consensus 231 d~~~~~~~~~~l~gH~~~v~~~~f~p~g----~~i~Sgs~D~tvriWd~~~~~~~~~l------------~~hs~~is~~ 294 (456)
T KOG0266|consen 231 DLKDDGRNLKTLKGHSTYVTSVAFSPDG----NLLVSGSDDGTVRIWDVRTGECVRKL------------KGHSDGISGL 294 (456)
T ss_pred eccCCCeEEEEecCCCCceEEEEecCCC----CEEEEecCCCcEEEEeccCCeEEEee------------eccCCceEEE
Confidence 99 6678999999999999999999953 99999999999999999987654433 3567899999
Q ss_pred EECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCC--eeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeee
Q psy9598 625 SFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDK--VDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRL 702 (1915)
Q Consensus 625 ~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~--V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~ 702 (1915)
+|+++|.+|++++.||.|+|||+.+.... ++..+.++... +++++|+|++.+|++++.|+.+++||+..+.+.....
T Consensus 295 ~f~~d~~~l~s~s~d~~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~ 373 (456)
T KOG0266|consen 295 AFSPDGNLLVSASYDGTIRVWDLETGSKL-CLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYT 373 (456)
T ss_pred EECCCCCEEEEcCCCccEEEEECCCCcee-eeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeec
Confidence 99999999999999999999999543311 34555666555 9999999999999999999999999999877543221
Q ss_pred cccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCC-CCCeEEEEEccCCCCEEE
Q psy9598 703 DMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGH-TNEVFVLESHPFDSRVLL 781 (1915)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH-~~~V~sl~~sp~dg~~La 781 (1915)
... .....+.+...++.+.++++++. |+.|++||+.++..+..+.+| ...|..+.++| ...+++
T Consensus 374 ~~~-------------~~~~~~~~~~~~~~~~~i~sg~~-d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~-~~~~~~ 438 (456)
T KOG0266|consen 374 GHS-------------NLVRCIFSPTLSTGGKLIYSGSE-DGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHP-TENLIA 438 (456)
T ss_pred ccC-------------CcceeEecccccCCCCeEEEEeC-CceEEEEeCCccchhhhhcCCCCCceeccccCC-CcCeee
Confidence 100 00134555666889999999998 999999999999999999999 88999999999 889999
Q ss_pred EEe--cCceEEEEECC
Q psy9598 782 SAG--HDGLIIIWDIL 795 (1915)
Q Consensus 782 Sgs--~DG~I~IWdl~ 795 (1915)
+++ .|+.|++|...
T Consensus 439 s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 439 SSSFEGDGLIRLWKYD 454 (456)
T ss_pred ecCcCCCceEEEecCC
Confidence 998 79999999753
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-28 Score=332.88 Aligned_cols=291 Identities=20% Similarity=0.292 Sum_probs=236.4
Q ss_pred ecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCC----c----EEEEEeCCCCCEEEEEEeC-CCCEEEEEeCCCcE
Q psy9598 472 NLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDG----K----LLATLRGCSGEISDIAIDN-RNILLAAGTVDKTI 542 (1915)
Q Consensus 472 l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg----~----~~~~l~gH~~~I~~Lafsp-dg~~LaSgs~DgtI 542 (1915)
+.+|.+.|++++|+|+|.+||||+.||.|+||++.+. . ....+. +...|.+++|++ ++.+||+|+.||+|
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v 557 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVV 557 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeE
Confidence 4569999999999999999999999999999997542 1 233344 346899999987 47899999999999
Q ss_pred EEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceE
Q psy9598 543 RIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHIL 622 (1915)
Q Consensus 543 rVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~ 622 (1915)
+|||+.++..+..+.+|.+.|++++|+|. ++.+|++|+.||+|++||+.++..+..+. +...|.
T Consensus 558 ~lWd~~~~~~~~~~~~H~~~V~~l~~~p~---~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~-------------~~~~v~ 621 (793)
T PLN00181 558 QVWDVARSQLVTEMKEHEKRVWSIDYSSA---DPTLLASGSDDGSVKLWSINQGVSIGTIK-------------TKANIC 621 (793)
T ss_pred EEEECCCCeEEEEecCCCCCEEEEEEcCC---CCCEEEEEcCCCEEEEEECCCCcEEEEEe-------------cCCCeE
Confidence 99999999999999999999999999973 45899999999999999998775433322 125689
Q ss_pred EEEEC-CCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEee
Q psy9598 623 CSSFS-PGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIR 701 (1915)
Q Consensus 623 ~l~fs-pdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~ 701 (1915)
|+.|+ ++|.+|++|+.||.|++||+.... ..+..+.+|...|.++.|. ++.+|++++.||+|+|||+......
T Consensus 622 ~v~~~~~~g~~latgs~dg~I~iwD~~~~~--~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~--- 695 (793)
T PLN00181 622 CVQFPSESGRSLAFGSADHKVYYYDLRNPK--LPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISG--- 695 (793)
T ss_pred EEEEeCCCCCEEEEEeCCCeEEEEECCCCC--ccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccc---
Confidence 99995 579999999999999999995432 2345677999999999997 7789999999999999998753200
Q ss_pred ecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEe-------------eCCCCCeE
Q psy9598 702 LDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVL-------------KGHTNEVF 768 (1915)
Q Consensus 702 ~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l-------------~gH~~~V~ 768 (1915)
..........+|...+.+++|++++.+|++|+. |+.|++|+......+..+ ..|...|.
T Consensus 696 -------~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~-D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~ 767 (793)
T PLN00181 696 -------INETPLHSFMGHTNVKNFVGLSVSDGYIATGSE-TNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFIS 767 (793)
T ss_pred -------cCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeC-CCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEE
Confidence 000111234457788899999999999999998 999999998765544322 23456799
Q ss_pred EEEEccCCCCEEEEEecCceEEEEEC
Q psy9598 769 VLESHPFDSRVLLSAGHDGLIIIWDI 794 (1915)
Q Consensus 769 sl~~sp~dg~~LaSgs~DG~I~IWdl 794 (1915)
+++|+| ++.+|++|+.||.|+||++
T Consensus 768 ~v~ws~-~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 768 SVCWRG-QSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EEEEcC-CCCeEEEecCCCcEEEEec
Confidence 999999 9999999999999999996
|
|
| >KOG0281|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-30 Score=286.37 Aligned_cols=283 Identities=20% Similarity=0.338 Sum_probs=235.5
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCc
Q psy9598 518 SGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDI 597 (1915)
Q Consensus 518 ~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~ 597 (1915)
...|.|+.+. ...+++|..|++|+|||..+..++..+.||++.|.|+.|.. ..|++||.|.+|++||+.++.
T Consensus 197 skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~------rviisGSSDsTvrvWDv~tge 268 (499)
T KOG0281|consen 197 SKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDE------RVIVSGSSDSTVRVWDVNTGE 268 (499)
T ss_pred CCceEEEEec--chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccc------eEEEecCCCceEEEEeccCCc
Confidence 4579999875 44799999999999999999999999999999999999976 799999999999999999998
Q ss_pred cccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCE
Q psy9598 598 DISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLR 677 (1915)
Q Consensus 598 ~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~ 677 (1915)
.+..+.. |...|..+.|+.+ ++++++.|.+|.|||+...........+.||...|+.+.|+ .++
T Consensus 269 ~l~tlih------------HceaVLhlrf~ng--~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~ky 332 (499)
T KOG0281|consen 269 PLNTLIH------------HCEAVLHLRFSNG--YMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKY 332 (499)
T ss_pred hhhHHhh------------hcceeEEEEEeCC--EEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cce
Confidence 7655543 4577888888754 89999999999999996555444555678999999999996 449
Q ss_pred EEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceE
Q psy9598 678 FVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLV 757 (1915)
Q Consensus 678 L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i 757 (1915)
++++|.|.+|++|++.+..++.+ ..+|...|.|+.+ .|+++++|++ |.+|++||+..|.++
T Consensus 333 IVsASgDRTikvW~~st~efvRt----------------l~gHkRGIAClQY--r~rlvVSGSS-DntIRlwdi~~G~cL 393 (499)
T KOG0281|consen 333 IVSASGDRTIKVWSTSTCEFVRT----------------LNGHKRGIACLQY--RDRLVVSGSS-DNTIRLWDIECGACL 393 (499)
T ss_pred EEEecCCceEEEEeccceeeehh----------------hhcccccceehhc--cCeEEEecCC-CceEEEEeccccHHH
Confidence 99999999999999998886542 3457777877765 5888888888 999999999999999
Q ss_pred EEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCcccc--ceeeeeeecCCCCcceEEEEEcCCCCEEEEEeCC
Q psy9598 758 QVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRG--YKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSY 835 (1915)
Q Consensus 758 ~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~--~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~d 835 (1915)
..+.||..-|.++.|. ...+++|+.||+|+|||+.++.... ..++.......|.|.|+.+.| |...|++++.|
T Consensus 394 RvLeGHEeLvRciRFd---~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHd 468 (499)
T KOG0281|consen 394 RVLEGHEELVRCIRFD---NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHD 468 (499)
T ss_pred HHHhchHHhhhheeec---CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCC
Confidence 9999999999999995 4889999999999999998765410 011111112356689999998 55789999999
Q ss_pred CeEEEEeCCCCcc
Q psy9598 836 GHLLVYGLGGFKR 848 (1915)
Q Consensus 836 G~I~Iwdl~s~~~ 848 (1915)
.+|.|||+..+-.
T Consensus 469 dtILiWdFl~~~~ 481 (499)
T KOG0281|consen 469 DTILIWDFLNGPP 481 (499)
T ss_pred CeEEEEEcCCCCc
Confidence 9999999987643
|
|
| >KOG0316|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.1e-29 Score=262.21 Aligned_cols=282 Identities=22% Similarity=0.298 Sum_probs=235.9
Q ss_pred eEEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECC
Q psy9598 469 HYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQ 548 (1915)
Q Consensus 469 ~~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~ 548 (1915)
.+.|.+|.++|.++.|+-+|+|.+|++.|.+|++|+...|.+++++.||...|.+++.+.|+..|++|+.|..|.+||+.
T Consensus 10 ~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~ 89 (307)
T KOG0316|consen 10 LSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVN 89 (307)
T ss_pred ceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcc
Confidence 34778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECC
Q psy9598 549 TLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSP 628 (1915)
Q Consensus 549 tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fsp 628 (1915)
+|+.+..+.+|.+.|+.+.|+... ..+++|+.|.+|++||.++..
T Consensus 90 TGkv~Rr~rgH~aqVNtV~fNees----SVv~SgsfD~s~r~wDCRS~s------------------------------- 134 (307)
T KOG0316|consen 90 TGKVDRRFRGHLAQVNTVRFNEES----SVVASGSFDSSVRLWDCRSRS------------------------------- 134 (307)
T ss_pred cCeeeeecccccceeeEEEecCcc----eEEEeccccceeEEEEcccCC-------------------------------
Confidence 999999999999999999998743 788888888888888876542
Q ss_pred CCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccC
Q psy9598 629 GGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCL 708 (1915)
Q Consensus 629 dg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~ 708 (1915)
...+..+......|.+|..+ +..+++||.||+++.||++.++...
T Consensus 135 ------------------------~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~s--------- 179 (307)
T KOG0316|consen 135 ------------------------FEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLSS--------- 179 (307)
T ss_pred ------------------------CCccchhhhhcCceeEEEec--ccEEEeeccCCcEEEEEeecceeeh---------
Confidence 11222233344566676664 5589999999999999999887322
Q ss_pred CCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCCCeEEE--EEccCCCCEEEEEecC
Q psy9598 709 PHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVL--ESHPFDSRVLLSAGHD 786 (1915)
Q Consensus 709 ~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl--~~sp~dg~~LaSgs~D 786 (1915)
.-...+|++++|+++++.+++++- |++|++.|-.+|+++..+.||.+.-+.+ +++. ....+++|+.|
T Consensus 180 ---------Dy~g~pit~vs~s~d~nc~La~~l-~stlrLlDk~tGklL~sYkGhkn~eykldc~l~q-sdthV~sgSED 248 (307)
T KOG0316|consen 180 ---------DYFGHPITSVSFSKDGNCSLASSL-DSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQ-SDTHVFSGSED 248 (307)
T ss_pred ---------hhcCCcceeEEecCCCCEEEEeec-cceeeecccchhHHHHHhcccccceeeeeeeecc-cceeEEeccCC
Confidence 124568999999999999999998 9999999999999999999998755444 4555 66789999999
Q ss_pred ceEEEEECCCCccccceeeeeeecCCCCcc-eEEEEEcCCCCEEEEEeCCCeE
Q psy9598 787 GLIIIWDILSSKQRGYKWFHNIVEGQGEGA-LFDGKWSPDGTTCALTDSYGHL 838 (1915)
Q Consensus 787 G~I~IWdl~s~~~~~~~~~~~~~~~~~~~~-V~~vafSpdg~~Lasg~~dG~I 838 (1915)
|.|++||+..... +..+. .+... |.+++++|.-..|++++..+.+
T Consensus 249 G~Vy~wdLvd~~~--~sk~~-----~~~~v~v~dl~~hp~~~~f~~A~~~~~~ 294 (307)
T KOG0316|consen 249 GKVYFWDLVDETQ--ISKLS-----VVSTVIVTDLSCHPTMDDFITATGHGDL 294 (307)
T ss_pred ceEEEEEecccee--eeeec-----cCCceeEEeeecccCccceeEecCCcee
Confidence 9999999988877 55544 33334 7899999988777777765443
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.4e-28 Score=287.49 Aligned_cols=288 Identities=27% Similarity=0.444 Sum_probs=248.2
Q ss_pred EEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEE
Q psy9598 511 LATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGF 590 (1915)
Q Consensus 511 ~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~i 590 (1915)
+.++.+|.+.|++++|++++.+|++|+.||.|++|++.++.....+.+|...+.++.|+|. +.+|++++.+|.|.+
T Consensus 2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~l~~~~~~~~i~i 77 (289)
T cd00200 2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASAD----GTYLASGSSDKTIRL 77 (289)
T ss_pred chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCC----CCEEEEEcCCCeEEE
Confidence 3567799999999999999999999999999999999999888899999999999999994 379999999999999
Q ss_pred EecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEE
Q psy9598 591 WKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQ 670 (1915)
Q Consensus 591 WDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~ 670 (1915)
|++..+.....+ ..|...+.++.|++++.++++++.+|.|.+|++. ....+..+..|...|.+++
T Consensus 78 ~~~~~~~~~~~~------------~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~~~~i~~~~ 142 (289)
T cd00200 78 WDLETGECVRTL------------TGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVE---TGKCLTTLRGHTDWVNSVA 142 (289)
T ss_pred EEcCcccceEEE------------eccCCcEEEEEEcCCCCEEEEecCCCeEEEEECC---CcEEEEEeccCCCcEEEEE
Confidence 999876432222 2445689999999998888888889999999994 3345566778999999999
Q ss_pred EcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEE
Q psy9598 671 WSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWD 750 (1915)
Q Consensus 671 fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD 750 (1915)
|++++.++++++.||.|++||+.+++.... ...+...+.+++|++++..+++++. ++.|++||
T Consensus 143 ~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~----------------~~~~~~~i~~~~~~~~~~~l~~~~~-~~~i~i~d 205 (289)
T cd00200 143 FSPDGTFVASSSQDGTIKLWDLRTGKCVAT----------------LTGHTGEVNSVAFSPDGEKLLSSSS-DGTIKLWD 205 (289)
T ss_pred EcCcCCEEEEEcCCCcEEEEEcccccccee----------------EecCccccceEEECCCcCEEEEecC-CCcEEEEE
Confidence 999998998888899999999986653321 1135568999999999999999998 99999999
Q ss_pred CCCCceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEE
Q psy9598 751 AFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCA 830 (1915)
Q Consensus 751 ~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~La 830 (1915)
+.++..+..+.+|...|.+++|+| ++.++++++.||.|++|++.++.. ...+. .+...|.+++|++++.+|+
T Consensus 206 ~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~i~i~~~~~~~~--~~~~~-----~~~~~i~~~~~~~~~~~l~ 277 (289)
T cd00200 206 LSTGKCLGTLRGHENGVNSVAFSP-DGYLLASGSEDGTIRVWDLRTGEC--VQTLS-----GHTNSVTSLAWSPDGKRLA 277 (289)
T ss_pred CCCCceecchhhcCCceEEEEEcC-CCcEEEEEcCCCcEEEEEcCCcee--EEEcc-----ccCCcEEEEEECCCCCEEE
Confidence 999999999989999999999999 788888888899999999988766 44443 4557899999999999999
Q ss_pred EEeCCCeEEEEe
Q psy9598 831 LTDSYGHLLVYG 842 (1915)
Q Consensus 831 sg~~dG~I~Iwd 842 (1915)
+++.||.|.+|+
T Consensus 278 ~~~~d~~i~iw~ 289 (289)
T cd00200 278 SGSADGTIRIWD 289 (289)
T ss_pred EecCCCeEEecC
Confidence 999999999996
|
|
| >KOG0276|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.6e-28 Score=285.18 Aligned_cols=378 Identities=21% Similarity=0.279 Sum_probs=274.4
Q ss_pred cccCCCeEEEecccCCceeeeEEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeC
Q psy9598 449 SGPLSRSLMISSHKYSNLRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDN 528 (1915)
Q Consensus 449 tg~~d~~~~i~~~~~~~~~~~~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafsp 528 (1915)
++-+.+.+.+|. |.+..+++.+.-..-+|.++.|-+-.++|++|++|+.|+||+..|++.+++|..|..-|.||+.+|
T Consensus 30 a~LynG~V~IWn--yetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHP 107 (794)
T KOG0276|consen 30 AALYNGDVQIWN--YETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHP 107 (794)
T ss_pred EeeecCeeEEEe--cccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecC
Confidence 344567788885 555666778888889999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEeCCCcEEEEECCC-CceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCc
Q psy9598 529 RNILLAAGTVDKTIRIWNLQT-LAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEP 607 (1915)
Q Consensus 529 dg~~LaSgs~DgtIrVWDl~t-g~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~ 607 (1915)
...+++|+|.|-+|++||.+. ..+..++.||+.-|.+|+|.|. +.+.++++|-|++|++|.+.+.....+
T Consensus 108 t~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPk---D~ntFaS~sLDrTVKVWslgs~~~nfT------ 178 (794)
T KOG0276|consen 108 TLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPK---DPNTFASASLDRTVKVWSLGSPHPNFT------ 178 (794)
T ss_pred CCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCC---CccceeeeeccccEEEEEcCCCCCcee------
Confidence 999999999999999999975 5788999999999999999994 679999999999999999877643222
Q ss_pred cccccccCCCCCceEEEEECCCC--cEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCC
Q psy9598 608 VMFNERIRPGNAHILCSSFSPGG--LFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDG 685 (1915)
Q Consensus 608 ~~~~~~~~~~~~~V~~l~fspdg--~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG 685 (1915)
+.+|...|+|+.|-+.| .+|++|+.|.+|+|||. .+..|+.++.||...|..++|+|.-..++|||.||
T Consensus 179 ------l~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDy---Qtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDG 249 (794)
T KOG0276|consen 179 ------LEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDY---QTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDG 249 (794)
T ss_pred ------eeccccCcceEEeccCCCcceEEecCCCceEEEeec---chHHHHHHhhcccccceEEEecCCCcEEEEecCCc
Confidence 33678899999999866 58999999999999999 56678999999999999999999999999999999
Q ss_pred cEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEee----
Q psy9598 686 TALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLK---- 761 (1915)
Q Consensus 686 ~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~---- 761 (1915)
+|+||...+-.... ...-....|+||+-.+.+..+++|.. .|.|.| .+....+...+.
T Consensus 250 TvriWhs~Ty~lE~----------------tLn~gleRvW~I~~~k~~~~i~vG~D-eg~i~v-~lgreeP~vsMd~~gK 311 (794)
T KOG0276|consen 250 TVRIWNSKTYKLEK----------------TLNYGLERVWCIAAHKGDGKIAVGFD-EGSVTV-KLGREEPAVSMDSNGK 311 (794)
T ss_pred cEEEecCcceehhh----------------hhhcCCceEEEEeecCCCCeEEEecc-CCcEEE-EccCCCCceeecCCcc
Confidence 99999876654211 11123456778887777777776665 444332 222111111110
Q ss_pred ----CCC------------------C---------------CeEEEEEccCCCCEEEEEecCceEEEEECCCCcccccee
Q psy9598 762 ----GHT------------------N---------------EVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKW 804 (1915)
Q Consensus 762 ----gH~------------------~---------------~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~ 804 (1915)
.|. + .-..++.+| +|+++++|| ||.-.||..-.-+
T Consensus 312 Iiwa~~~ei~~~~~ks~~~~~ev~DgErL~LsvKeLgs~eiyPq~L~hsP-NGrfV~Vcg-dGEyiIyTala~R------ 383 (794)
T KOG0276|consen 312 IIWAVHSEIQAVNLKSVGAQKEVTDGERLPLSVKELGSVEIYPQTLAHSP-NGRFVVVCG-DGEYIIYTALALR------ 383 (794)
T ss_pred EEEEcCceeeeeeceeccCcccccCCccccchhhhccccccchHHhccCC-CCcEEEEec-CccEEEEEeeehh------
Confidence 000 0 012345667 777666555 7887787642211
Q ss_pred eeeeecCCCCcceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcccccCCC--ceeecCCCCeeeecCCCccceeeccc
Q psy9598 805 FHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGGFKRPQNIPR--ELFFHTDYRTLNRPNGLFEPTYDEVT 880 (1915)
Q Consensus 805 ~~~~~~~~~~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl~s~~~~~~l~~--~~~F~~d~~~Lv~~~~~~~~v~D~~t 880 (1915)
....|.-....|++|.+.+|+-.++|.|.++ ..++..+.+.. ..-+--.|..|...+.+++..||..+
T Consensus 384 ------nK~fG~~~eFvw~~dsne~avRes~~~vki~--knfke~ksi~~~~~~e~i~gg~Llg~~ss~~~~fydW~~ 453 (794)
T KOG0276|consen 384 ------NKAFGSGLEFVWAADSNEFAVRESNGNVKIF--KNFKEHKSIRPDMSAEGIFGGPLLGVRSSDFLCFYDWES 453 (794)
T ss_pred ------hcccccceeEEEcCCCCeEEEEecCCceEEE--ecceeccccccccceeeecCCceEEEEeCCeEEEEEccc
Confidence 1223445566677776667777666667666 44444443332 11122223333344444444555433
|
|
| >KOG0282|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=5e-30 Score=297.16 Aligned_cols=290 Identities=19% Similarity=0.312 Sum_probs=248.6
Q ss_pred cEEEEEeCCCCCEEEEEEeC-CCCEEEEEeCCCcEEEEECCC-CceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCC
Q psy9598 509 KLLATLRGCSGEISDIAIDN-RNILLAAGTVDKTIRIWNLQT-LAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDG 586 (1915)
Q Consensus 509 ~~~~~l~gH~~~I~~Lafsp-dg~~LaSgs~DgtIrVWDl~t-g~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~Dg 586 (1915)
+.++++.||+..|++|.|.| .+.+|++|+.|+.|+||++.. +.++.++.||..+|.+++|++. +..|+++|.|+
T Consensus 205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~----g~~fLS~sfD~ 280 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNC----GTSFLSASFDR 280 (503)
T ss_pred hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhcccc----CCeeeeeecce
Confidence 56778899999999999999 899999999999999999976 8999999999999999999984 58999999999
Q ss_pred eEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCC-cEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCC
Q psy9598 587 CIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGG-LFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDK 665 (1915)
Q Consensus 587 tI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg-~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~ 665 (1915)
+|++||+.+|.++..+... ..++|+.|.|++ +.+++|+.|+.|+.||++. ...+..+..|-+.
T Consensus 281 ~lKlwDtETG~~~~~f~~~-------------~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs---~kvvqeYd~hLg~ 344 (503)
T KOG0282|consen 281 FLKLWDTETGQVLSRFHLD-------------KVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRS---GKVVQEYDRHLGA 344 (503)
T ss_pred eeeeeccccceEEEEEecC-------------CCceeeecCCCCCcEEEEecCCCcEEEEeccc---hHHHHHHHhhhhh
Confidence 9999999999887766554 668999999998 8899999999999999954 3456677889999
Q ss_pred eeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCe
Q psy9598 666 VDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQ 745 (1915)
Q Consensus 666 V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~ 745 (1915)
|..|.|-++|.+|++++.|++++||+.+....+... .........+|..+|++.++++-+. |+.
T Consensus 345 i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i---------------~~~~~hsmP~~~~~P~~~~~~aQs~-dN~ 408 (503)
T KOG0282|consen 345 ILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNI---------------ADPEMHTMPCLTLHPNGKWFAAQSM-DNY 408 (503)
T ss_pred eeeeEEccCCceEeeeccCccEEEEEcCCCccchhh---------------cchhhccCcceecCCCCCeehhhcc-Cce
Confidence 999999999999999999999999998876533211 1123344567899999999999888 999
Q ss_pred EEEEECCCC---ceEEEeeCCC--CCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEE
Q psy9598 746 IKIWDAFNG---DLVQVLKGHT--NEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDG 820 (1915)
Q Consensus 746 I~vwD~~tg---~~i~~l~gH~--~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~v 820 (1915)
|.+|.+... ..-..+.||. +.-..|.||| ||.+|++|+.||.|.+||..+.+. +..+. .|.+++..+
T Consensus 409 i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSp-DG~~l~SGdsdG~v~~wdwkt~kl--~~~lk-----ah~~~ci~v 480 (503)
T KOG0282|consen 409 IAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSP-DGRTLCSGDSDGKVNFWDWKTTKL--VSKLK-----AHDQPCIGV 480 (503)
T ss_pred EEEEecccccccCHhhhhcceeccCceeeEEEcC-CCCeEEeecCCccEEEeechhhhh--hhccc-----cCCcceEEE
Confidence 999986532 3344677885 4567788999 999999999999999999999887 66665 567899999
Q ss_pred EEcCC-CCEEEEEeCCCeEEEEe
Q psy9598 821 KWSPD-GTTCALTDSYGHLLVYG 842 (1915)
Q Consensus 821 afSpd-g~~Lasg~~dG~I~Iwd 842 (1915)
.|+|. ...+|+|+.+|.|++|+
T Consensus 481 ~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 481 DWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred EecCCCcceeEecccCceeEecC
Confidence 99995 56899999999999996
|
|
| >KOG0292|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.2e-28 Score=294.78 Aligned_cols=400 Identities=19% Similarity=0.231 Sum_probs=281.4
Q ss_pred CCeEEEecccCCceeeeEEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCE
Q psy9598 453 SRSLMISSHKYSNLRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNIL 532 (1915)
Q Consensus 453 d~~~~i~~~~~~~~~~~~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~ 532 (1915)
.+.+.+|+. .--.++.+|.+|.++|..|+|+|++.++++||+|-.|+||+..+.+++.+|.||-.-|..+.|++.-.+
T Consensus 30 sG~IQlWDY--RM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPW 107 (1202)
T KOG0292|consen 30 SGVIQLWDY--RMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPW 107 (1202)
T ss_pred Cceeeeehh--hhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCce
Confidence 456777754 444556689999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCcccccee---------
Q psy9598 533 LAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTV--------- 603 (1915)
Q Consensus 533 LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~--------- 603 (1915)
|+|+|.|.+|+||++++.+++.++.||...|.|..|+|.. .+++++|-|.+|++||+..-..-....
T Consensus 108 IlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptE----DlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~ 183 (1202)
T KOG0292|consen 108 ILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTE----DLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRG 183 (1202)
T ss_pred EEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCcc----ceEEEecccceEEEEeecchhccCCCCCCchhhhhc
Confidence 9999999999999999999999999999999999999965 899999999999999986532211110
Q ss_pred -------c-cCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCC
Q psy9598 604 -------F-HEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSH 675 (1915)
Q Consensus 604 -------~-~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg 675 (1915)
+ .........+.+|...|+.++|+|.-.+|++|+.|..|++|.+.. ...-.+-+..+|.+.|.++-|+|..
T Consensus 184 ~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmne-tKaWEvDtcrgH~nnVssvlfhp~q 262 (1202)
T KOG0292|consen 184 QQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNE-TKAWEVDTCRGHYNNVSSVLFHPHQ 262 (1202)
T ss_pred cccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEecc-ccceeehhhhcccCCcceEEecCcc
Confidence 0 011223345678999999999999999999999999999999943 3344566788999999999999999
Q ss_pred CEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEe--------------
Q psy9598 676 LRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAIN-------------- 741 (1915)
Q Consensus 676 ~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~-------------- 741 (1915)
.+++|.|.|++|+|||+.....+..+. ......+.++.+|..+++++|..
T Consensus 263 ~lIlSnsEDksirVwDm~kRt~v~tfr----------------rendRFW~laahP~lNLfAAgHDsGm~VFkleRErpa 326 (1202)
T KOG0292|consen 263 DLILSNSEDKSIRVWDMTKRTSVQTFR----------------RENDRFWILAAHPELNLFAAGHDSGMIVFKLERERPA 326 (1202)
T ss_pred ceeEecCCCccEEEEecccccceeeee----------------ccCCeEEEEEecCCcceeeeecCCceEEEEEcccCce
Confidence 999999999999999998766443321 12344556666666655554432
Q ss_pred -----------cCCeEEEEECCCCce--EEEeeCC---CCCeEEEEEccCCCCEEEEEecC-ceEEEEECCCCcccccee
Q psy9598 742 -----------FNFQIKIWDAFNGDL--VQVLKGH---TNEVFVLESHPFDSRVLLSAGHD-GLIIIWDILSSKQRGYKW 804 (1915)
Q Consensus 742 -----------~Dg~I~vwD~~tg~~--i~~l~gH---~~~V~sl~~sp~dg~~LaSgs~D-G~I~IWdl~s~~~~~~~~ 804 (1915)
.|..|+.+|+.+.+- +..++.. ..++.++.++|..+..|++...| |.--++.+...... ...
T Consensus 327 ~~v~~n~LfYvkd~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk~~~~-~~~ 405 (1202)
T KOG0292|consen 327 YAVNGNGLFYVKDRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLICSNLDNGEYELVQIPKDSDG-VSD 405 (1202)
T ss_pred EEEcCCEEEEEccceEEeeeccccccceeEeccCCCcccCCcceeeeccccCeEEEEeccCCCeEEEEEecCcccc-cCC
Confidence 023344445444222 2223322 25788899999556566665544 44445555332110 000
Q ss_pred eeeeecCCCCcceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcc--ccc--CCCceeecCCCCeeeecCCCccceeeccc
Q psy9598 805 FHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGGFKR--PQN--IPRELFFHTDYRTLNRPNGLFEPTYDEVT 880 (1915)
Q Consensus 805 ~~~~~~~~~~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl~s~~~--~~~--l~~~~~F~~d~~~Lv~~~~~~~~v~D~~t 880 (1915)
......+.+.+++ |-...++.+.--++..+.|-++.+... +.. ....+|+..+|..|++.... +.++|++.
T Consensus 406 ~~~~~k~tG~~a~----fvarNrfavl~k~~~~v~ik~l~N~vtkkl~~~~~~~~IF~ag~g~lll~~~~~-v~lfdvQq 480 (1202)
T KOG0292|consen 406 GKDVKKGTGEGAL----FVARNRFAVLDKSNEQVVIKNLKNKVTKKLLLPESTDDIFYAGTGNLLLRSPDS-VTLFDVQQ 480 (1202)
T ss_pred chhhhcCCCCceE----EEEecceEEEEecCcceEEecccchhhhcccCcccccceeeccCccEEEEcCCe-EEEEEeec
Confidence 0111122222222 222223333333356677777764321 111 22378999999888754322 24778775
Q ss_pred C
Q psy9598 881 N 881 (1915)
Q Consensus 881 ~ 881 (1915)
.
T Consensus 481 ~ 481 (1202)
T KOG0292|consen 481 K 481 (1202)
T ss_pred c
Confidence 5
|
|
| >KOG1474|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-30 Score=337.20 Aligned_cols=253 Identities=26% Similarity=0.441 Sum_probs=191.0
Q ss_pred hcCCCccCCCCCCCCCCCC--CccccccCCCCCHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHH
Q psy9598 1385 VMGLSVAEPFLVPVDISQY--PAYAYVVEYPVDLTTLRARFQNRFYRRITSAQFDVRYLAANAEKFNEPHSNIVKYARII 1462 (1915)
Q Consensus 1385 ~~~~~~~~~F~~pv~~~~~--p~Y~~~I~~PmdL~tI~~rl~~~~Y~~~~~~~~D~~l~~~Na~~yN~~~s~i~~~a~~l 1462 (1915)
+..+.++++|..||+...+ |+||.+|++|||++||.+|+++++|.......+||..+|.||.+||.++-.|+.+++.+
T Consensus 4 ~~~~~~~~~f~~~v~~v~l~~~~~~~~~~~~~d~~~~~~~~e~n~~~~~~~~~~~f~~~~sn~~~~~~~~~~v~~~~~~~ 83 (640)
T KOG1474|consen 4 ARKHKLAWPFLEPVDAVALNLPAYYEIIKRPMDIGTIEKRVENNYYFSASECIADFKTKFSNCYLFNDSGDDVVRMKQSL 83 (640)
T ss_pred cccccccccccCccchhhccchhhhcccCCCCCchhhhhhhccCccccHhhhhhhccccccchhcccCCccchhhccccc
Confidence 3467789999999998744 99999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCccch--hhhh----------------cccc-----------cCCC------------Chhh----
Q psy9598 1463 TDLLLRIIKEPNPVDVPVV--YHEL----------------LQNY-----------ETSS------------SEEE---- 1497 (1915)
Q Consensus 1463 ~~~~~~~~~~~~~~~~~~~--~~~~----------------~~~~-----------~~~~------------~~~~---- 1497 (1915)
.+++.+.+..++-...... .... .... .... ....
T Consensus 84 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (640)
T KOG1474|consen 84 EKLFPKKLRSMPSDEEDKSSVGPKASKIPLDKDSSSQVRKLSERLKQELQQVRPLTKAVEFSPEPSVVSPVSPASQPFKS 163 (640)
T ss_pred hhhcccccccccccccCCcccccccccCcCCCCchhhhhhhhhccccccccCCcccccccccccccccCCCCCccccccc
Confidence 9999777765332211110 0000 0000 0000 0000
Q ss_pred -------hh--hhh-hhhccccCCcchhhhhH-H-------------HhhhhhcCCchhhHHHHHHHHHHHHcCCCCCCC
Q psy9598 1498 -------EE--EDS-KSRQRRVRPTAVTRAQR-E-------------AMNQKKLKRPFNWKNECREVLETLWVCPDSEPF 1553 (1915)
Q Consensus 1498 -------~~--~~~-~~~~~~~~~~~~~~~~~-~-------------~~~~~~~~~~~~~~~~~~~ll~~l~~~~~s~~F 1553 (1915)
.+ .++ .....+.......+... . ............+.++|..||..|+.|+++|||
T Consensus 164 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~C~~iLk~l~~~k~awpF 243 (640)
T KOG1474|consen 164 KNGVKKVADTCVKSYKSKSEREPSPGQKREGTVAPNSSRESGDSAAEEEAKPKSKLTVELLKQCLSILKRLMKHKHAWPF 243 (640)
T ss_pred ccchhhhhccccccccccCcCCCCccccccccccCccccccccccccccccccccccHHHHHHHHHHHHHHHhccCCCCc
Confidence 00 000 00000000000000000 0 011112344566889999999999999999999
Q ss_pred CCCCC--CCCCCCccccccCccchhhHHhhhcCCCCCCHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHH
Q psy9598 1554 RKPVD--KLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQNKRSKIYIMTTRLSEFAEEHLR 1631 (1915)
Q Consensus 1554 ~~pv~--~~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~Dv~lif~Na~~yN~~~~s~i~~~a~~l~~~f~~~~~ 1631 (1915)
+.||| ..++||||+|||+||||+||++||.++.|.++.+|..||+|||.||++||+++ +.||.||..|+.+|+.+|.
T Consensus 244 ~~PVD~v~LgLpDY~~IIK~PMDLgTIK~kL~~~~Y~~~~eF~~DVRL~F~Ncm~YNp~g-~dV~~Ma~~L~~~Fe~rw~ 322 (640)
T KOG1474|consen 244 NEPVDVVKLGLPDYHDIIKHPMDLGTIKKKLEKGEYKSAEEFAADVRLTFDNCMTYNPEG-SDVYAMAKKLQEVFEERWA 322 (640)
T ss_pred CCCcCHHhcCCcchhhhcCCCccHHHHHhhhcccccCCHHHHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHHHHHHh
Confidence 99999 88999999999999999999999999999999999999999999999999988 9999999999999999999
Q ss_pred HHHHHhh
Q psy9598 1632 RLTVRWN 1638 (1915)
Q Consensus 1632 ~~~~~~~ 1638 (1915)
.+...+.
T Consensus 323 ~~~~~~~ 329 (640)
T KOG1474|consen 323 SMPLEIE 329 (640)
T ss_pred hcccccc
Confidence 9887665
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-27 Score=325.10 Aligned_cols=307 Identities=15% Similarity=0.253 Sum_probs=244.4
Q ss_pred CCcEEEEECCCCcEEEEE-----eCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCC----c----eEEEeecCCCCe
Q psy9598 497 DLLIKLWRARDGKLLATL-----RGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTL----A----PISVLVGHQGII 563 (1915)
Q Consensus 497 Dg~I~IWd~~tg~~~~~l-----~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg----~----~~~~l~~h~~~V 563 (1915)
+|.+++|+..+......+ .+|.+.|++++|+++|.+||+|+.|++|+||++.+. . ++..+. +...|
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v 535 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKL 535 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCce
Confidence 788999998876655443 458999999999999999999999999999998542 1 223333 34679
Q ss_pred EEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECC-CCcEEEEEeCCCeE
Q psy9598 564 TGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSP-GGLFLATGSGDHHV 642 (1915)
Q Consensus 564 ~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fsp-dg~~Lasgs~Dg~I 642 (1915)
.+++|++. .+.+|++++.||+|++||+.++..+. .+..|...|++++|+| ++.+|++|+.||.|
T Consensus 536 ~~l~~~~~---~~~~las~~~Dg~v~lWd~~~~~~~~------------~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v 600 (793)
T PLN00181 536 SGICWNSY---IKSQVASSNFEGVVQVWDVARSQLVT------------EMKEHEKRVWSIDYSSADPTLLASGSDDGSV 600 (793)
T ss_pred eeEEeccC---CCCEEEEEeCCCeEEEEECCCCeEEE------------EecCCCCCEEEEEEcCCCCCEEEEEcCCCEE
Confidence 99999884 35789999999999999998764322 2235678899999997 78899999999999
Q ss_pred EEEEecCCCCCceeEEeccCCCCeeEEEEc-CCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCcccccccccc
Q psy9598 643 RVYKMDGVDSPLGILEVEEHSDKVDSIQWS-HSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKK 721 (1915)
Q Consensus 643 ~IwDl~~~~~~~~i~~l~~h~~~V~sl~fs-pdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 721 (1915)
++||+.. ...+..+..+ ..|.++.|+ ++|.+|++|+.||.|++||++..... .....+|.
T Consensus 601 ~iWd~~~---~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~---------------~~~~~~h~ 661 (793)
T PLN00181 601 KLWSINQ---GVSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLP---------------LCTMIGHS 661 (793)
T ss_pred EEEECCC---CcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCcc---------------ceEecCCC
Confidence 9999943 3445555544 679999995 57999999999999999999765411 01123577
Q ss_pred ccEEEEEECCCCCEEEEEEecCCeEEEEECCC------CceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECC
Q psy9598 722 IKVTMVAWDASDRWVITAINFNFQIKIWDAFN------GDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDIL 795 (1915)
Q Consensus 722 ~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~t------g~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~ 795 (1915)
..|.++.|. ++.+|++++. |++|+|||+.. +.++..+.+|...+.+++|+| ++.+|++|+.||.|+||+..
T Consensus 662 ~~V~~v~f~-~~~~lvs~s~-D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~-~~~~lasgs~D~~v~iw~~~ 738 (793)
T PLN00181 662 KTVSYVRFV-DSSTLVSSST-DNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSV-SDGYIATGSETNEVFVYHKA 738 (793)
T ss_pred CCEEEEEEe-CCCEEEEEEC-CCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcC-CCCEEEEEeCCCEEEEEECC
Confidence 889999997 7888999888 99999999974 367889999999999999999 88999999999999999987
Q ss_pred CCccccceeeee--------eecCCCCcceEEEEEcCCCCEEEEEeCCCeEEEEeC
Q psy9598 796 SSKQRGYKWFHN--------IVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGL 843 (1915)
Q Consensus 796 s~~~~~~~~~~~--------~~~~~~~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl 843 (1915)
.... +..+.. .....+...|.+++|+|++..|++|+.+|.|+||++
T Consensus 739 ~~~~--~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 739 FPMP--VLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred CCCc--eEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 6654 222210 001123457999999999999999999999999986
|
|
| >KOG0275|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.3e-29 Score=272.66 Aligned_cols=286 Identities=21% Similarity=0.307 Sum_probs=244.1
Q ss_pred cCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEE--------eCCCCCEEEEEEeCCCCEEEEEeCCCcEEE
Q psy9598 473 LGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATL--------RGCSGEISDIAIDNRNILLAAGTVDKTIRI 544 (1915)
Q Consensus 473 ~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l--------~gH~~~I~~Lafspdg~~LaSgs~DgtIrV 544 (1915)
.|..+-+-|..|||||+||++|+.||-|-|||..+|++...+ --|...|.||+|+.|..+||+|+.||.|+|
T Consensus 210 Fg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKv 289 (508)
T KOG0275|consen 210 FGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKV 289 (508)
T ss_pred cccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEE
Confidence 477788999999999999999999999999999999876544 357889999999999999999999999999
Q ss_pred EECCCCceEEEee-cCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEE
Q psy9598 545 WNLQTLAPISVLV-GHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILC 623 (1915)
Q Consensus 545 WDl~tg~~~~~l~-~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~ 623 (1915)
|.+.+|.|+..|. .|+..|+|+.|+. ++..+++++.|.++++.-+.+|+++.. +++|.+.|+.
T Consensus 290 Wri~tG~ClRrFdrAHtkGvt~l~FSr----D~SqiLS~sfD~tvRiHGlKSGK~LKE------------frGHsSyvn~ 353 (508)
T KOG0275|consen 290 WRIETGQCLRRFDRAHTKGVTCLSFSR----DNSQILSASFDQTVRIHGLKSGKCLKE------------FRGHSSYVNE 353 (508)
T ss_pred EEEecchHHHHhhhhhccCeeEEEEcc----CcchhhcccccceEEEeccccchhHHH------------hcCccccccc
Confidence 9999999999987 8999999999998 458999999999999999998875443 4567899999
Q ss_pred EEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEe--ccCCCCeeEEEEcCC-CCEEEEEeCCCcEEEEEccCCceEEe
Q psy9598 624 SSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEV--EEHSDKVDSIQWSHS-HLRFVSGSRDGTALIWYYKCSQWRFI 700 (1915)
Q Consensus 624 l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l--~~h~~~V~sl~fspd-g~~L~sgs~DG~I~IWDl~~~~~~~~ 700 (1915)
+.|+++|..+++++.||+|+||+..+ ..++.++ .+...+|.++..-|. ...|++|...++|.|-++...-...
T Consensus 354 a~ft~dG~~iisaSsDgtvkvW~~Kt---teC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrs- 429 (508)
T KOG0275|consen 354 ATFTDDGHHIISASSDGTVKVWHGKT---TECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRS- 429 (508)
T ss_pred eEEcCCCCeEEEecCCccEEEecCcc---hhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEee-
Confidence 99999999999999999999999843 3344433 345567888887765 4589999999999999887443211
Q ss_pred eecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEE
Q psy9598 701 RLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVL 780 (1915)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~L 780 (1915)
. .......+...+++++|.|.++++.+. |+.++.|.+.+|.+-+++..|...|..++-|| ..++|
T Consensus 430 f-------------sSGkREgGdFi~~~lSpkGewiYcigE-D~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHP-HqNll 494 (508)
T KOG0275|consen 430 F-------------SSGKREGGDFINAILSPKGEWIYCIGE-DGVLYCFSVLSGKLERTLPVHEKDVIGLTHHP-HQNLL 494 (508)
T ss_pred e-------------ccCCccCCceEEEEecCCCcEEEEEcc-CcEEEEEEeecCceeeeeecccccccccccCc-ccchh
Confidence 1 111223456778889999999999998 99999999999999999999999999999999 88999
Q ss_pred EEEecCceEEEEE
Q psy9598 781 LSAGHDGLIIIWD 793 (1915)
Q Consensus 781 aSgs~DG~I~IWd 793 (1915)
++-+.||.+++|.
T Consensus 495 AsYsEDgllKLWk 507 (508)
T KOG0275|consen 495 ASYSEDGLLKLWK 507 (508)
T ss_pred hhhcccchhhhcC
Confidence 9999999999994
|
|
| >KOG0293|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-28 Score=278.94 Aligned_cols=293 Identities=17% Similarity=0.241 Sum_probs=245.5
Q ss_pred EEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCC---CceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCC
Q psy9598 510 LLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQT---LAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDG 586 (1915)
Q Consensus 510 ~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~t---g~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~Dg 586 (1915)
..+++..|+..|.-+.||++|++||||+.|.+..||.+.. .+..+++.+|..+|..|.|+|+. ++|++|+.+.
T Consensus 216 t~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDd----ryLlaCg~~e 291 (519)
T KOG0293|consen 216 TWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDD----RYLLACGFDE 291 (519)
T ss_pred hhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCC----CeEEecCchH
Confidence 3456788999999999999999999999999999998854 34578899999999999999954 9999999999
Q ss_pred eEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccC-CCC
Q psy9598 587 CIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEH-SDK 665 (1915)
Q Consensus 587 tI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h-~~~ 665 (1915)
.+.+||+.++........ ++...+.|++|.|||..+++|+.|+.|..||+++.. +....+- ...
T Consensus 292 ~~~lwDv~tgd~~~~y~~-----------~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~----~~~W~gvr~~~ 356 (519)
T KOG0293|consen 292 VLSLWDVDTGDLRHLYPS-----------GLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI----LGNWEGVRDPK 356 (519)
T ss_pred heeeccCCcchhhhhccc-----------CcCCCcceeEEccCCceeEecCCCCcEEEecCCcch----hhcccccccce
Confidence 999999999865333221 124678999999999999999999999999996532 2222222 256
Q ss_pred eeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCe
Q psy9598 666 VDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQ 745 (1915)
Q Consensus 666 V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~ 745 (1915)
|.++++++||.++++.+.|..|++++..+...+. ......+|+++++|.+|+++++.-. +..
T Consensus 357 v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~-----------------lise~~~its~~iS~d~k~~LvnL~-~qe 418 (519)
T KOG0293|consen 357 VHDLAITYDGKYVLLVTVDKKIRLYNREARVDRG-----------------LISEEQPITSFSISKDGKLALVNLQ-DQE 418 (519)
T ss_pred eEEEEEcCCCcEEEEEecccceeeechhhhhhhc-----------------cccccCceeEEEEcCCCcEEEEEcc-cCe
Confidence 9999999999999999999999999887654221 2224568999999999999999988 999
Q ss_pred EEEEECCCCceEEEeeCCCCC--eEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEc
Q psy9598 746 IKIWDAFNGDLVQVLKGHTNE--VFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWS 823 (1915)
Q Consensus 746 I~vwD~~tg~~i~~l~gH~~~--V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafS 823 (1915)
|++||+....++..+.||... |..-||...+..++++|+.|+.|+||+..++++ +..+. +|...|.+|+|+
T Consensus 419 i~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkl--l~~Ls-----GHs~~vNcVswN 491 (519)
T KOG0293|consen 419 IHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKL--LAVLS-----GHSKTVNCVSWN 491 (519)
T ss_pred eEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCce--eEeec-----CCcceeeEEecC
Confidence 999999998999999999764 444567765778999999999999999999999 77665 677899999999
Q ss_pred C-CCCEEEEEeCCCeEEEEeCCCC
Q psy9598 824 P-DGTTCALTDSYGHLLVYGLGGF 846 (1915)
Q Consensus 824 p-dg~~Lasg~~dG~I~Iwdl~s~ 846 (1915)
| +..+||+++.||+|+||.....
T Consensus 492 P~~p~m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 492 PADPEMFASASDDGTIRIWGPSDN 515 (519)
T ss_pred CCCHHHhhccCCCCeEEEecCCcc
Confidence 9 6678999999999999998753
|
|
| >KOG0266|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.4e-27 Score=300.42 Aligned_cols=293 Identities=26% Similarity=0.421 Sum_probs=248.1
Q ss_pred EEEEeCC-CCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCc--eEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCe
Q psy9598 511 LATLRGC-SGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLA--PISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGC 587 (1915)
Q Consensus 511 ~~~l~gH-~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~--~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~Dgt 587 (1915)
...+.+| ...|+|+.|+++|.+|++++.|+.|++|++.++. ....+.+|...|.+++|+|+ +.++++|+.|++
T Consensus 151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d----~~~l~s~s~D~t 226 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPD----GSYLLSGSDDKT 226 (456)
T ss_pred eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCC----CcEEEEecCCce
Confidence 4445444 7889999999999999999999999999998877 77788899999999999995 489999999999
Q ss_pred EEEEecccC-ccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCe
Q psy9598 588 IGFWKYKLD-IDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKV 666 (1915)
Q Consensus 588 I~iWDl~~~-~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V 666 (1915)
|++||+... ..+ ..+.+|...|+|++|+|+|++|++|+.|++|+|||+. ...++..+.+|.+.|
T Consensus 227 iriwd~~~~~~~~------------~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~---~~~~~~~l~~hs~~i 291 (456)
T KOG0266|consen 227 LRIWDLKDDGRNL------------KTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVR---TGECVRKLKGHSDGI 291 (456)
T ss_pred EEEeeccCCCeEE------------EEecCCCCceEEEEecCCCCEEEEecCCCcEEEEecc---CCeEEEeeeccCCce
Confidence 999999333 222 2344788999999999999999999999999999994 367788899999999
Q ss_pred eEEEEcCCCCEEEEEeCCCcEEEEEccCCceE--EeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCC
Q psy9598 667 DSIQWSHSHLRFVSGSRDGTALIWYYKCSQWR--FIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNF 744 (1915)
Q Consensus 667 ~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg 744 (1915)
++++|+++|.+|++++.||.|+|||+.++... ... ....... .+++++|+|++.+|++++. |+
T Consensus 292 s~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~-------------~~~~~~~-~~~~~~fsp~~~~ll~~~~-d~ 356 (456)
T KOG0266|consen 292 SGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLL-------------SGAENSA-PVTSVQFSPNGKYLLSASL-DR 356 (456)
T ss_pred EEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecc-------------cCCCCCC-ceeEEEECCCCcEEEEecC-CC
Confidence 99999999999999999999999999998732 111 1111223 7999999999999999998 99
Q ss_pred eEEEEECCCCceEEEeeCCCCCe---EEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEE
Q psy9598 745 QIKIWDAFNGDLVQVLKGHTNEV---FVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGK 821 (1915)
Q Consensus 745 ~I~vwD~~tg~~i~~l~gH~~~V---~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~va 821 (1915)
.+++||+..+.++..+.+|...+ ++...++ .+.++++|+.|+.|.+|++.++.. +..+. ++....+..++
T Consensus 357 ~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~sg~~d~~v~~~~~~s~~~--~~~l~----~h~~~~~~~~~ 429 (456)
T KOG0266|consen 357 TLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLST-GGKLIYSGSEDGSVYVWDSSSGGI--LQRLE----GHSKAAVSDLS 429 (456)
T ss_pred eEEEEEccCCcceeeecccCCcceeEecccccC-CCCeEEEEeCCceEEEEeCCccch--hhhhc----CCCCCceeccc
Confidence 99999999999999999998854 3334455 889999999999999999998766 55444 22268899999
Q ss_pred EcCCCCEEEEEe--CCCeEEEEeCC
Q psy9598 822 WSPDGTTCALTD--SYGHLLVYGLG 844 (1915)
Q Consensus 822 fSpdg~~Lasg~--~dG~I~Iwdl~ 844 (1915)
|+|...++++++ .|+.|.+|...
T Consensus 430 ~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 430 SHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred cCCCcCeeeecCcCCCceEEEecCC
Confidence 999999999998 78899999754
|
|
| >KOG0643|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.1e-28 Score=259.34 Aligned_cols=296 Identities=20% Similarity=0.293 Sum_probs=241.3
Q ss_pred EecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCC
Q psy9598 471 VNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTL 550 (1915)
Q Consensus 471 ~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg 550 (1915)
.|.||..+++-|.|+.+|.+|++++.|.++.||-..+|+.+.++.||++.|.|+..+.+..+|++|+.|.++++||+.+|
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG 84 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG 84 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEeecCCCCeEEEEeccCccCCCcEEEEEe-----CCCeEEEEecccCccccceeccCccccccccCCCCCceEEEE
Q psy9598 551 APISVLVGHQGIITGVNFCPLEVNGFNYLASTS-----TDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSS 625 (1915)
Q Consensus 551 ~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs-----~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~ 625 (1915)
++++.+. ...+|..+.|++. +++++.+. ..+.|.++|++.... ......| ...+..+...++.+.
T Consensus 85 k~la~~k-~~~~Vk~~~F~~~----gn~~l~~tD~~mg~~~~v~~fdi~~~~~--~~~s~ep---~~kI~t~~skit~a~ 154 (327)
T KOG0643|consen 85 KQLATWK-TNSPVKRVDFSFG----GNLILASTDKQMGYTCFVSVFDIRDDSS--DIDSEEP---YLKIPTPDSKITSAL 154 (327)
T ss_pred cEEEEee-cCCeeEEEeeccC----CcEEEEEehhhcCcceEEEEEEccCChh--hhcccCc---eEEecCCccceeeee
Confidence 9999987 4568999999984 35655554 346899999885432 1111111 112334458899999
Q ss_pred ECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeeccc
Q psy9598 626 FSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMN 705 (1915)
Q Consensus 626 fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~ 705 (1915)
|.|-+.+|++|..||.|.+||+.+. ...+.....|...|+.|+++++..+|++||.|.+.++||+.+.++.....
T Consensus 155 Wg~l~~~ii~Ghe~G~is~~da~~g--~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~--- 229 (327)
T KOG0643|consen 155 WGPLGETIIAGHEDGSISIYDARTG--KELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYT--- 229 (327)
T ss_pred ecccCCEEEEecCCCcEEEEEcccC--ceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEee---
Confidence 9999999999999999999999533 23445557799999999999999999999999999999999877655332
Q ss_pred ccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCe-E------------EEEECCCCceEEEeeCCCCCeEEEEE
Q psy9598 706 TCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQ-I------------KIWDAFNGDLVQVLKGHTNEVFVLES 772 (1915)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~-I------------~vwD~~tg~~i~~l~gH~~~V~sl~~ 772 (1915)
...+|++.+++|...+++.+++.+.. | ++|++-..+.+..++||-++|++|+|
T Consensus 230 --------------te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAf 295 (327)
T KOG0643|consen 230 --------------TERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAF 295 (327)
T ss_pred --------------ecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEE
Confidence 45678999999998888887752211 1 12222223456778999999999999
Q ss_pred ccCCCCEEEEEecCceEEEEECCC
Q psy9598 773 HPFDSRVLLSAGHDGLIIIWDILS 796 (1915)
Q Consensus 773 sp~dg~~LaSgs~DG~I~IWdl~s 796 (1915)
|| +|...++||.||.|+|.-+..
T Consensus 296 hP-dGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 296 HP-DGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred CC-CCcccccCCCCceEEEEEecc
Confidence 99 999999999999999986643
|
|
| >KOG1408|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.3e-27 Score=276.79 Aligned_cols=402 Identities=16% Similarity=0.156 Sum_probs=280.3
Q ss_pred eeeeEEecCCCCcEEEEEEcCCCCEEEEEE--CCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeC--CCc
Q psy9598 466 LRQHYVNLGHLSAVFCVLFDKLGEVIVTGA--DDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTV--DKT 541 (1915)
Q Consensus 466 ~~~~~~l~gH~~~V~~vafspdg~~LaTGs--~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~--Dgt 541 (1915)
..+.+.+..|..+++||+||++|+|+|||- ..-.++||++.+...+..|..|.-.|+|++|+|.++||++.+. |-.
T Consensus 68 ~tQ~hlvnssRk~~t~vAfS~~GryvatGEcG~~pa~kVw~la~h~vVAEfvdHKY~vtcvaFsp~~kyvvSVGsQHDMI 147 (1080)
T KOG1408|consen 68 CTQSHLVNSSRKPLTCVAFSQNGRYVATGECGRTPASKVWSLAFHGVVAEFVDHKYNVTCVAFSPGNKYVVSVGSQHDMI 147 (1080)
T ss_pred cchhheecccCcceeEEEEcCCCcEEEecccCCCccceeeeeccccchhhhhhccccceeeeecCCCcEEEeeccccceE
Confidence 344556678889999999999999999985 5668999999999999999999999999999999999997653 445
Q ss_pred EEEEECC----------------------------------------CCceE----------------------------
Q psy9598 542 IRIWNLQ----------------------------------------TLAPI---------------------------- 553 (1915)
Q Consensus 542 IrVWDl~----------------------------------------tg~~~---------------------------- 553 (1915)
|.+||+. .++..
T Consensus 148 Vnv~dWr~N~~~asnkiss~Vsav~fsEdgSYfvT~gnrHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~ 227 (1080)
T KOG1408|consen 148 VNVNDWRVNSSGASNKISSVVSAVAFSEDGSYFVTSGNRHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGV 227 (1080)
T ss_pred EEhhhhhhcccccccccceeEEEEEEccCCceeeeeeeeeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcC
Confidence 5566543 11100
Q ss_pred -------EEe--ecC-----------------CCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceecc--
Q psy9598 554 -------SVL--VGH-----------------QGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFH-- 605 (1915)
Q Consensus 554 -------~~l--~~h-----------------~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~-- 605 (1915)
..+ .|| +...+||+.+ .++|++|+.+|+|++|+..+-.-..++...
T Consensus 228 gicAestfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcVs------~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~ha 301 (1080)
T KOG1408|consen 228 GICAESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICVS------SRLIACGCAKGMVRLFNPETLDYAGTLPRSHA 301 (1080)
T ss_pred cccccceEEEecccceeeechhhhhhhhhhhhccccceeeee------cceEEEeeccceeeecCcchhhhccccccccc
Confidence 000 000 0112233333 378889999999999987654433332221
Q ss_pred ---------Cc-cccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCC-
Q psy9598 606 ---------EP-VMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHS- 674 (1915)
Q Consensus 606 ---------~~-~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspd- 674 (1915)
.+ ..+.....+..-....+.|++....|.+...|+.|+|||++..........+--|...|++|..-|-
T Consensus 302 lg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~n 381 (1080)
T KOG1408|consen 302 LGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCN 381 (1080)
T ss_pred cccchhhcccccccccccCcccCCceeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeecccccc
Confidence 00 0001111111223457889999999999999999999999877766677777789999988876551
Q ss_pred ----------CCEEEEEeCCCcEEEEEccCCceEEe----eec--c--------cc------c-CCCCcccccccccccc
Q psy9598 675 ----------HLRFVSGSRDGTALIWYYKCSQWRFI----RLD--M--------NT------C-LPHTKETSDETNKKIK 723 (1915)
Q Consensus 675 ----------g~~L~sgs~DG~I~IWDl~~~~~~~~----~~~--~--------~~------~-~~~~~~~~~~~~~~~~ 723 (1915)
...|++|+.||+|++|++.....-.+ .+. + .. . ................
T Consensus 382 v~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G 461 (1080)
T KOG1408|consen 382 VHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFG 461 (1080)
T ss_pred ccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccc
Confidence 12699999999999999876321110 000 0 00 0 0001111223345678
Q ss_pred EEEEEECCCCCEEEEEEecCCeEEEEECCCCc----------------------------------------------eE
Q psy9598 724 VTMVAWDASDRWVITAINFNFQIKIWDAFNGD----------------------------------------------LV 757 (1915)
Q Consensus 724 V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~----------------------------------------------~i 757 (1915)
+.+++.+|+|++|++|.. .|.|+||++...+ ++
T Consensus 462 ~R~~~vSp~gqhLAsGDr-~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~ 540 (1080)
T KOG1408|consen 462 FRALAVSPDGQHLASGDR-GGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLV 540 (1080)
T ss_pred eEEEEECCCcceecccCc-cCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchh
Confidence 999999999999999988 8999999874321 22
Q ss_pred EEeeCCCCCeEEEEEccC------------------------------------------------CCCEEEEEecCceE
Q psy9598 758 QVLKGHTNEVFVLESHPF------------------------------------------------DSRVLLSAGHDGLI 789 (1915)
Q Consensus 758 ~~l~gH~~~V~sl~~sp~------------------------------------------------dg~~LaSgs~DG~I 789 (1915)
+++.+|...|++|.|.-. ...++++++.|..|
T Consensus 541 qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrni 620 (1080)
T KOG1408|consen 541 QTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNI 620 (1080)
T ss_pred hhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccce
Confidence 344567766666654320 34578899999999
Q ss_pred EEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcccccCCC------ceeecCCCC
Q psy9598 790 IIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGGFKRPQNIPR------ELFFHTDYR 863 (1915)
Q Consensus 790 ~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl~s~~~~~~l~~------~~~F~~d~~ 863 (1915)
+||++.+++. .+.|.. ...+.|....+...|.|.+||+.++|.+|.+||+.+++++.++-+ .+.|.+|.+
T Consensus 621 rif~i~sgKq--~k~FKg--s~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCk 696 (1080)
T KOG1408|consen 621 RIFDIESGKQ--VKSFKG--SRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCK 696 (1080)
T ss_pred EEEeccccce--eeeecc--cccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccch
Confidence 9999999998 777761 123347788899999999999999999999999999999987765 589999999
Q ss_pred eeeecCC-Cccceeec
Q psy9598 864 TLNRPNG-LFEPTYDE 878 (1915)
Q Consensus 864 ~Lv~~~~-~~~~v~D~ 878 (1915)
.|+..++ +.+-||-+
T Consensus 697 HlISvsgDgCIFvW~l 712 (1080)
T KOG1408|consen 697 HLISVSGDGCIFVWKL 712 (1080)
T ss_pred hheeecCCceEEEEEC
Confidence 9984433 22339965
|
|
| >KOG0265|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.8e-27 Score=259.96 Aligned_cols=288 Identities=17% Similarity=0.292 Sum_probs=239.6
Q ss_pred EEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECC-CCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeE
Q psy9598 510 LLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQ-TLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCI 588 (1915)
Q Consensus 510 ~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~-tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI 588 (1915)
++..+.||.+.|+.+.|+|+|.+||||+.|..|.+|++. ..+...++.+|.+.|..+.|.+ ++..|++++.|.+|
T Consensus 39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~----d~s~i~S~gtDk~v 114 (338)
T KOG0265|consen 39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMR----DGSHILSCGTDKTV 114 (338)
T ss_pred hhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeecc----CCCEEEEecCCceE
Confidence 445678999999999999999999999999999999964 4566778899999999999998 45999999999999
Q ss_pred EEEecccCccccceeccCccccccccCCCCCceEEEEECCCC-cEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCee
Q psy9598 589 GFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGG-LFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVD 667 (1915)
Q Consensus 589 ~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg-~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~ 667 (1915)
+.||+.+++.+.... .|...|+++.-+.-| .+|.+|+.||+++|||++... .+.++ .....++
T Consensus 115 ~~wD~~tG~~~rk~k------------~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~---~~~t~-~~kyqlt 178 (338)
T KOG0265|consen 115 RGWDAETGKRIRKHK------------GHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKE---AIKTF-ENKYQLT 178 (338)
T ss_pred EEEecccceeeehhc------------cccceeeecCccccCCeEEEecCCCceEEEEeecccc---hhhcc-ccceeEE
Confidence 999999997655443 445667777744444 356778899999999996432 22222 2356789
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEE
Q psy9598 668 SIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIK 747 (1915)
Q Consensus 668 sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~ 747 (1915)
++.|...+..+++|+-|+.|++||++.+...++ ..+|...|+.+..+++|.++++-+. |.+++
T Consensus 179 Av~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~----------------lsGh~DtIt~lsls~~gs~llsnsM-d~tvr 241 (338)
T KOG0265|consen 179 AVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYT----------------LSGHADTITGLSLSRYGSFLLSNSM-DNTVR 241 (338)
T ss_pred EEEecccccceeeccccCceeeeccccCcceEE----------------eecccCceeeEEeccCCCccccccc-cceEE
Confidence 999999999999999999999999988765442 4568899999999999999999888 99999
Q ss_pred EEECCC----CceEEEeeCCCC----CeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEE
Q psy9598 748 IWDAFN----GDLVQVLKGHTN----EVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFD 819 (1915)
Q Consensus 748 vwD~~t----g~~i~~l~gH~~----~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~ 819 (1915)
+||++- ..++..+.+|.. ....++|+| ++..+.+|+.|..|++||..+... +..+. .|.+.|.+
T Consensus 242 vwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp-~~~~i~ags~dr~vyvwd~~~r~~--lyklp-----Gh~gsvn~ 313 (338)
T KOG0265|consen 242 VWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSP-NGTKITAGSADRFVYVWDTTSRRI--LYKLP-----GHYGSVNE 313 (338)
T ss_pred EEEecccCCCCceEEEeecchhhhhhhcceeeccC-CCCccccccccceEEEeecccccE--EEEcC-----CcceeEEE
Confidence 999874 456888888754 456788999 999999999999999999987665 44444 67799999
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEe
Q psy9598 820 GKWSPDGTTCALTDSYGHLLVYG 842 (1915)
Q Consensus 820 vafSpdg~~Lasg~~dG~I~Iwd 842 (1915)
++|+|...+|.++++|.+|++=.
T Consensus 314 ~~Fhp~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 314 VDFHPTEPIILSCSSDKTIYLGE 336 (338)
T ss_pred eeecCCCcEEEEeccCceeEeec
Confidence 99999999999999999998743
|
|
| >KOG1474|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.8e-29 Score=320.62 Aligned_cols=223 Identities=25% Similarity=0.395 Sum_probs=166.5
Q ss_pred ChHHHHhhcccccCCHHHHHHHHHHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHhcCCCCCCCcc--hhhhhccccCCCC
Q psy9598 1 LTTLRARFQNRFYRRITSAQFDVRYLAANAEKFNEPHSNIVKYARIITDLLLRIIKEPNPVDVPV--VYHELLQNYETSS 78 (1915)
Q Consensus 1 L~tI~~kl~~~~Y~~~~ef~~D~~li~~Na~~yN~p~s~I~~~A~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 78 (1915)
++||++++.+++|....++++||..+|.||+.||.+.-.|+.++..+.+++.+.+..++...... .............
T Consensus 37 ~~~~~~~~e~n~~~~~~~~~~~f~~~~sn~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 116 (640)
T KOG1474|consen 37 IGTIEKRVENNYYFSASECIADFKTKFSNCYLFNDSGDDVVRMKQSLEKLFPKKLRSMPSDEEDKSSVGPKASKIPLDKD 116 (640)
T ss_pred chhhhhhhccCccccHhhhhhhccccccchhcccCCccchhhccccchhhcccccccccccccCCcccccccccCcCCCC
Confidence 47999999999999999999999999999999999999999999999999877777776321111 0000000000000
Q ss_pred ------------------------Ccc--------------cc----------cccccccc---cccCCCC-c-chhh-h
Q psy9598 79 ------------------------SEE--------------EE----------EEDSKSRQ---RRVRPTA-V-TRAQ-R 104 (1915)
Q Consensus 79 ------------------------~~~--------------~~----------~~~~~~~~---~~~~~~~-~-~~~~-~ 104 (1915)
.-+ .- ..+...++ ...+... . .+.. .
T Consensus 117 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 196 (640)
T KOG1474|consen 117 SSSQVRKLSERLKQELQQVRPLTKAVEFSPEPSVVSPVSPASQPFKSKNGVKKVADTCVKSYKSKSEREPSPGQKREGTV 196 (640)
T ss_pred chhhhhhhhhccccccccCCcccccccccccccccCCCCCcccccccccchhhhhccccccccccCcCCCCccccccccc
Confidence 000 00 00000000 0000000 0 0000 0
Q ss_pred h-------------hhhccccCCchhHHHHHHHHHHHHhcCCCCCCCCCCCC--CCCCCCccccCCCcCCHHHHHHHhcC
Q psy9598 105 E-------------AMNQKKLKRPFNWKNECREVLETLWVCPDSEPFRKPVD--KLDHPDYDKIVIAPMDLGTIREELRG 169 (1915)
Q Consensus 105 ~-------------~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~F~~pvd--~~~~pdY~~iIk~Pmdl~ti~~kl~~ 169 (1915)
. .......+....+.+.|..||+.|++|+++|||+.||| .+++||||+|||+||||+||++||.+
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~C~~iLk~l~~~k~awpF~~PVD~v~LgLpDY~~IIK~PMDLgTIK~kL~~ 276 (640)
T KOG1474|consen 197 APNSSRESGDSAAEEEAKPKSKLTVELLKQCLSILKRLMKHKHAWPFNEPVDVVKLGLPDYHDIIKHPMDLGTIKKKLEK 276 (640)
T ss_pred cCccccccccccccccccccccccHHHHHHHHHHHHHHHhccCCCCcCCCcCHHhcCCcchhhhcCCCccHHHHHhhhcc
Confidence 0 11122344556789999999999999999999999999 89999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy9598 170 DNYESPIDFVKDVKRVFHNSRNYNQNKRSKIYIMTTRLSEFAEEHLRRLTVRWNS 224 (1915)
Q Consensus 170 ~~Y~~~~~f~~D~~Lif~N~~~yN~~~~s~i~~~a~~l~~~f~~~~~~~~~~~~~ 224 (1915)
+.|.++.+|+.||+|||.|||+||+++ ++||.||+.|+++|+.+|+.+...+..
T Consensus 277 ~~Y~~~~eF~~DVRL~F~Ncm~YNp~g-~dV~~Ma~~L~~~Fe~rw~~~~~~~~~ 330 (640)
T KOG1474|consen 277 GEYKSAEEFAADVRLTFDNCMTYNPEG-SDVYAMAKKLQEVFEERWASMPLEIEE 330 (640)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHHHHHHhhccccccc
Confidence 999999999999999999999999987 999999999999999999998877653
|
|
| >KOG0313|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.1e-27 Score=266.47 Aligned_cols=290 Identities=21% Similarity=0.349 Sum_probs=243.0
Q ss_pred CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEeccc
Q psy9598 516 GCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKL 595 (1915)
Q Consensus 516 gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~ 595 (1915)
.|...|.+|... +.+|++|+.||+++|||.. |++...+.||+++|.+++|.-... ....|+++|.|.++++|-+..
T Consensus 103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~-Gk~~~~~~Ght~~ik~v~~v~~n~-~~~~fvsas~Dqtl~Lw~~~~ 178 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDLK-GKSIKTIVGHTGPIKSVAWVIKNS-SSCLFVSASMDQTLRLWKWNV 178 (423)
T ss_pred cchhhhhhhccc--CceEEEeecCCeeEEEecC-CceEEEEecCCcceeeeEEEecCC-ccceEEEecCCceEEEEEecC
Confidence 388889988877 6799999999999999975 899999999999999888875431 334799999999999999887
Q ss_pred CccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecC----------------------CCCC
Q psy9598 596 DIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDG----------------------VDSP 653 (1915)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~----------------------~~~~ 653 (1915)
+....... ....+|...|-|++..++|..+++|+.|.+|.||+... ....
T Consensus 179 ~~~~~~~~--------~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r 250 (423)
T KOG0313|consen 179 GENKVKAL--------KVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTR 250 (423)
T ss_pred chhhhhHH--------hHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhccccc
Confidence 75432221 22338899999999999999999999999999999321 1233
Q ss_pred ceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCC
Q psy9598 654 LGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASD 733 (1915)
Q Consensus 654 ~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg 733 (1915)
..+..+.||..+|.+|.|++ ...++++|.|.+|+.||+.++...... .....++++..++..
T Consensus 251 ~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~-----------------~~~ksl~~i~~~~~~ 312 (423)
T KOG0313|consen 251 TPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTL-----------------TTNKSLNCISYSPLS 312 (423)
T ss_pred CceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeee-----------------ecCcceeEeeccccc
Confidence 45678899999999999998 668999999999999999998854321 245678999999999
Q ss_pred CEEEEEEecCCeEEEEECCCCc---eEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCc-cccceeeeeee
Q psy9598 734 RWVITAINFNFQIKIWDAFNGD---LVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSK-QRGYKWFHNIV 809 (1915)
Q Consensus 734 ~~L~t~s~~Dg~I~vwD~~tg~---~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~-~~~~~~~~~~~ 809 (1915)
.+|++|++ |..|++||.+++. ..++|.||.+.|.++.|+|.+..+|++|+.||++++||+++.. + +..+.
T Consensus 313 ~Ll~~gss-dr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~p--lydI~--- 386 (423)
T KOG0313|consen 313 KLLASGSS-DRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAP--LYDIA--- 386 (423)
T ss_pred ceeeecCC-CCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCc--ceeec---
Confidence 99999998 9999999998753 4668889999999999999888999999999999999999877 4 44444
Q ss_pred cCCCCcceEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q psy9598 810 EGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLG 844 (1915)
Q Consensus 810 ~~~~~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl~ 844 (1915)
.|...|.++.|+ +|..|++|+.|.+|+|+...
T Consensus 387 --~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 387 --GHNDKVLSVDWN-EGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred --cCCceEEEEecc-CCceEEeccCcceEEEeccc
Confidence 567899999998 46789999999999999654
|
|
| >KOG0640|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.2e-27 Score=258.54 Aligned_cols=297 Identities=17% Similarity=0.262 Sum_probs=241.0
Q ss_pred EEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCC------------C------cEEEEEeCCCCCEEEEEEeCCCC
Q psy9598 470 YVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARD------------G------KLLATLRGCSGEISDIAIDNRNI 531 (1915)
Q Consensus 470 ~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~t------------g------~~~~~l~gH~~~I~~Lafspdg~ 531 (1915)
..+..|.+++.|.+|++||.++||||.|..|+|+|+.. | -.+++|-.|...|++|.|+|...
T Consensus 106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ 185 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRET 185 (430)
T ss_pred EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhh
Confidence 45778999999999999999999999999999999861 1 26788999999999999999999
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEe--ecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccc
Q psy9598 532 LLAAGTVDKTIRIWNLQTLAPISVL--VGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVM 609 (1915)
Q Consensus 532 ~LaSgs~DgtIrVWDl~tg~~~~~l--~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~ 609 (1915)
.|++|+.|++|+++|+........+ .....+|.+|.|+|. |.+|+.|..-.++++||+.+-++.....
T Consensus 186 ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPs----GefllvgTdHp~~rlYdv~T~Qcfvsan------ 255 (430)
T KOG0640|consen 186 ILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPS----GEFLLVGTDHPTLRLYDVNTYQCFVSAN------ 255 (430)
T ss_pred eEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCC----CceEEEecCCCceeEEeccceeEeeecC------
Confidence 9999999999999999753322222 124568999999995 5999999999999999999886533222
Q ss_pred cccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEe-ccCCC-CeeEEEEcCCCCEEEEEeCCCcE
Q psy9598 610 FNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEV-EEHSD-KVDSIQWSHSHLRFVSGSRDGTA 687 (1915)
Q Consensus 610 ~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l-~~h~~-~V~sl~fspdg~~L~sgs~DG~I 687 (1915)
.-..|.+.|+++.+++.|++.++|+.||.|+|||- -...++.++ .+|.+ .|.+..|..+|+++++++.|..|
T Consensus 256 ---Pd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDG---VS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~v 329 (430)
T KOG0640|consen 256 ---PDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDG---VSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTV 329 (430)
T ss_pred ---cccccccceeEEEecCCccEEEEeccCCcEEeecc---ccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCccee
Confidence 12357789999999999999999999999999996 233444444 34544 68889999999999999999999
Q ss_pred EEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEee-CCCCC
Q psy9598 688 LIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLK-GHTNE 766 (1915)
Q Consensus 688 ~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~-gH~~~ 766 (1915)
++|.+.++.++......... +....-+...|+....|++.-....+.+.-||.+++..+..+. ||++.
T Consensus 330 kLWEi~t~R~l~~YtGAg~t-----------grq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a 398 (430)
T KOG0640|consen 330 KLWEISTGRMLKEYTGAGTT-----------GRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGA 398 (430)
T ss_pred eeeeecCCceEEEEecCCcc-----------cchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCC
Confidence 99999999977655433211 1112223456777788888777667889999999987766664 99999
Q ss_pred eEEEEEccCCCCEEEEEecCceEEEEEC
Q psy9598 767 VFVLESHPFDSRVLLSAGHDGLIIIWDI 794 (1915)
Q Consensus 767 V~sl~~sp~dg~~LaSgs~DG~I~IWdl 794 (1915)
+..+.-+| .+..++|||.|-.+++|--
T Consensus 399 ~R~i~HSP-~~p~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 399 VRWIVHSP-VEPAFMTCSDDFRARFWYR 425 (430)
T ss_pred ceEEEeCC-CCCceeeecccceeeeeee
Confidence 99999999 8888999999999999964
|
|
| >KOG0278|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-27 Score=255.76 Aligned_cols=293 Identities=19% Similarity=0.237 Sum_probs=253.7
Q ss_pred EEEeCCCCCEEEEEEeC---CCCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeE
Q psy9598 512 ATLRGCSGEISDIAIDN---RNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCI 588 (1915)
Q Consensus 512 ~~l~gH~~~I~~Lafsp---dg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI 588 (1915)
.+..||+.+|..|+||| +|-+|++++.|+.-.+-+-.+|.-+.+|.||.+.|++.....+ ....++++.|-+.
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~n----a~~aasaaadfta 83 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKN----ATRAASAAADFTA 83 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCch----hhhhhhhcccchh
Confidence 46789999999999975 8999999999999998899999999999999999999988763 4778899999999
Q ss_pred EEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeE
Q psy9598 589 GFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDS 668 (1915)
Q Consensus 589 ~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~s 668 (1915)
++||.-++..+..+ .|..-|..++|+.|..+|++|+.+..++|||++... .....+.+|.+.|..
T Consensus 84 kvw~a~tgdelhsf-------------~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~--App~E~~ghtg~Ir~ 148 (334)
T KOG0278|consen 84 KVWDAVTGDELHSF-------------EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPK--APPKEISGHTGGIRT 148 (334)
T ss_pred hhhhhhhhhhhhhh-------------hhhheeeeEEecccchhhhccchHHHhhhhhccCCC--CCchhhcCCCCccee
Confidence 99999888654443 244678999999999999999999999999996443 334567899999999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEE
Q psy9598 669 IQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKI 748 (1915)
Q Consensus 669 l~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~v 748 (1915)
+.|+.....|++++.|++|++||.+++..+... .....|+++-++++|++|.++. .+.|.+
T Consensus 149 v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL-----------------~~~s~VtSlEvs~dG~ilTia~--gssV~F 209 (334)
T KOG0278|consen 149 VLWCHEDKCILSSADDKTVRLWDHRTGTEVQSL-----------------EFNSPVTSLEVSQDGRILTIAY--GSSVKF 209 (334)
T ss_pred EEEeccCceEEeeccCCceEEEEeccCcEEEEE-----------------ecCCCCcceeeccCCCEEEEec--CceeEE
Confidence 999999999999999999999999998855432 2456789999999999988876 478999
Q ss_pred EECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCE
Q psy9598 749 WDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTT 828 (1915)
Q Consensus 749 wD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~ 828 (1915)
||..+..++..+.... .|.+...+| +..++++|+.|+.++.||..++.. +..+ ..+|+++|.|+.|+|||..
T Consensus 210 wdaksf~~lKs~k~P~-nV~SASL~P-~k~~fVaGged~~~~kfDy~TgeE--i~~~----nkgh~gpVhcVrFSPdGE~ 281 (334)
T KOG0278|consen 210 WDAKSFGLLKSYKMPC-NVESASLHP-KKEFFVAGGEDFKVYKFDYNTGEE--IGSY----NKGHFGPVHCVRFSPDGEL 281 (334)
T ss_pred eccccccceeeccCcc-ccccccccC-CCceEEecCcceEEEEEeccCCce--eeec----ccCCCCceEEEEECCCCce
Confidence 9999999998887554 488999999 779999999999999999999988 4443 2467899999999999999
Q ss_pred EEEEeCCCeEEEEeCCCCcccc
Q psy9598 829 CALTDSYGHLLVYGLGGFKRPQ 850 (1915)
Q Consensus 829 Lasg~~dG~I~Iwdl~s~~~~~ 850 (1915)
.|+|+.||+|+||.+..++...
T Consensus 282 yAsGSEDGTirlWQt~~~~~~~ 303 (334)
T KOG0278|consen 282 YASGSEDGTIRLWQTTPGKTYG 303 (334)
T ss_pred eeccCCCceEEEEEecCCCchh
Confidence 9999999999999998876654
|
|
| >KOG0288|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.7e-28 Score=276.38 Aligned_cols=286 Identities=26% Similarity=0.343 Sum_probs=244.5
Q ss_pred EEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCc--EEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEEC
Q psy9598 470 YVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGK--LLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNL 547 (1915)
Q Consensus 470 ~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~--~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl 547 (1915)
..+..|.+.|..+.|-++...|+||+.|..|++|++..++ ++.+|.|..+.|+++.|.+++.++++++.|+.+++|++
T Consensus 169 ~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnv 248 (459)
T KOG0288|consen 169 FVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNV 248 (459)
T ss_pred hhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeec
Confidence 4677899999999999998999999999999999987766 78889999999999999999999999999999999999
Q ss_pred CCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEEC
Q psy9598 548 QTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFS 627 (1915)
Q Consensus 548 ~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs 627 (1915)
..++..++|.||++.|+++.|.-.. ..+++|+.|.+|++||+....+..+..+. ..+..|+.+
T Consensus 249 d~~r~~~TLsGHtdkVt~ak~~~~~----~~vVsgs~DRtiK~WDl~k~~C~kt~l~~-------------S~cnDI~~~ 311 (459)
T KOG0288|consen 249 DSLRLRHTLSGHTDKVTAAKFKLSH----SRVVSGSADRTIKLWDLQKAYCSKTVLPG-------------SQCNDIVCS 311 (459)
T ss_pred cchhhhhhhcccccceeeehhhccc----cceeeccccchhhhhhhhhhheecccccc-------------ccccceEec
Confidence 9999999999999999999998743 44999999999999999987665554433 334444444
Q ss_pred CCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeeccccc
Q psy9598 628 PGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTC 707 (1915)
Q Consensus 628 pdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~ 707 (1915)
+..+++|..|+.|++||+++ ..+......+. .|++|..+++|..|++++.|.++.+.|+++.+.........
T Consensus 312 --~~~~~SgH~DkkvRfwD~Rs---~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g-- 383 (459)
T KOG0288|consen 312 --ISDVISGHFDKKVRFWDIRS---ADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEG-- 383 (459)
T ss_pred --ceeeeecccccceEEEeccC---CceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccc--
Confidence 55789999999999999843 34455555554 99999999999999999999999999999988655432111
Q ss_pred CCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCC--CeEEEEEccCCCCEEEEEec
Q psy9598 708 LPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTN--EVFVLESHPFDSRVLLSAGH 785 (1915)
Q Consensus 708 ~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~--~V~sl~~sp~dg~~LaSgs~ 785 (1915)
......++.++|||++.|+++|+. ||.|+||++.++++...+..... .|++++|+| .|..|++++.
T Consensus 384 ----------~k~asDwtrvvfSpd~~YvaAGS~-dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~-sG~~Llsadk 451 (459)
T KOG0288|consen 384 ----------FKCASDWTRVVFSPDGSYVAAGSA-DGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNP-SGSGLLSADK 451 (459)
T ss_pred ----------cccccccceeEECCCCceeeeccC-CCcEEEEEccCceEEEEeccCCCCcceEEEEEcC-CCchhhcccC
Confidence 112344888999999999999999 99999999999999999886554 499999999 9999999999
Q ss_pred CceEEEE
Q psy9598 786 DGLIIIW 792 (1915)
Q Consensus 786 DG~I~IW 792 (1915)
++.+.+|
T Consensus 452 ~~~v~lW 458 (459)
T KOG0288|consen 452 QKAVTLW 458 (459)
T ss_pred CcceEec
Confidence 9999999
|
|
| >KOG1539|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.2e-26 Score=278.39 Aligned_cols=366 Identities=18% Similarity=0.291 Sum_probs=293.4
Q ss_pred ccccccCCCeEEEecccCCceeeeEEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEE
Q psy9598 446 REYSGPLSRSLMISSHKYSNLRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIA 525 (1915)
Q Consensus 446 r~~tg~~d~~~~i~~~~~~~~~~~~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~La 525 (1915)
..+-|+..+.+.+|.. ..-++++++.+|.+.|+|+.=+|-=..+|.|..+|+|.|+++..++.+.+|+.-.+.|++|+
T Consensus 174 KIvvGs~~G~lql~Nv--rt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslS 251 (910)
T KOG1539|consen 174 KIVVGSSQGRLQLWNV--RTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLS 251 (910)
T ss_pred eEEEeecCCcEEEEEe--ccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEE
Confidence 3445788888889854 44567789999999999999999999999999999999999999999999995569999999
Q ss_pred EeCCCC-EEEEEeCCCcEEEEECCCCceEEEee-cCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccce-
Q psy9598 526 IDNRNI-LLAAGTVDKTIRIWNLQTLAPISVLV-GHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKT- 602 (1915)
Q Consensus 526 fspdg~-~LaSgs~DgtIrVWDl~tg~~~~~l~-~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~- 602 (1915)
|.-||. +||+|+..|.+.+||++..+.+..+. .|.+.|+.+.|.|. ...|++++.|..+++|=.+++.....+
T Consensus 252 FrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~----epVl~ta~~DnSlk~~vfD~~dg~pR~L 327 (910)
T KOG1539|consen 252 FRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPG----EPVLVTAGADNSLKVWVFDSGDGVPRLL 327 (910)
T ss_pred eccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCC----CceEeeccCCCceeEEEeeCCCCcchhe
Confidence 999987 56777778999999999888777666 78899999999984 478999999999888855422110000
Q ss_pred -------------ec-------------------------------cC--------cc-cc-------------------
Q psy9598 603 -------------VF-------------------------------HE--------PV-MF------------------- 610 (1915)
Q Consensus 603 -------------~~-------------------------------~~--------~~-~~------------------- 610 (1915)
.+ .. .. .+
T Consensus 328 R~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~R 407 (910)
T KOG1539|consen 328 RSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAR 407 (910)
T ss_pred eeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccch
Confidence 00 00 00 00
Q ss_pred ---------------------------cc------ccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeE
Q psy9598 611 ---------------------------NE------RIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGIL 657 (1915)
Q Consensus 611 ---------------------------~~------~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~ 657 (1915)
.. .+......+++++.++.|++.+.|+..|.|-+|++..+-......
T Consensus 408 E~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~ 487 (910)
T KOG1539|consen 408 EKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFG 487 (910)
T ss_pred hhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccc
Confidence 00 011123668899999999999999999999999994332222222
Q ss_pred EeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEE
Q psy9598 658 EVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVI 737 (1915)
Q Consensus 658 ~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~ 737 (1915)
.-..|.++|++|+....++.+++++.+|.+++||+.....+.. ......+.++..+.....++
T Consensus 488 ~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~-----------------l~l~~~~~~iv~hr~s~l~a 550 (910)
T KOG1539|consen 488 DSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKS-----------------LRLGSSITGIVYHRVSDLLA 550 (910)
T ss_pred cCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeee-----------------eccCCCcceeeeeehhhhhh
Confidence 2368999999999999899999999999999999987763221 11345567778888888888
Q ss_pred EEEecCCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcce
Q psy9598 738 TAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGAL 817 (1915)
Q Consensus 738 t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V 817 (1915)
+++. |-.|.++|..+.+.++.|.||.+.|++++||| +|++|++++.|++|++||+.++.+ +..+. -..+.
T Consensus 551 ~~~d-df~I~vvD~~t~kvvR~f~gh~nritd~~FS~-DgrWlisasmD~tIr~wDlpt~~l--ID~~~------vd~~~ 620 (910)
T KOG1539|consen 551 IALD-DFSIRVVDVVTRKVVREFWGHGNRITDMTFSP-DGRWLISASMDSTIRTWDLPTGTL--IDGLL------VDSPC 620 (910)
T ss_pred hhcC-ceeEEEEEchhhhhhHHhhccccceeeeEeCC-CCcEEEEeecCCcEEEEeccCcce--eeeEe------cCCcc
Confidence 8888 99999999999999999999999999999999 999999999999999999999998 55554 34678
Q ss_pred EEEEEcCCCCEEEEEeCC-CeEEEEeCC
Q psy9598 818 FDGKWSPDGTTCALTDSY-GHLLVYGLG 844 (1915)
Q Consensus 818 ~~vafSpdg~~Lasg~~d-G~I~Iwdl~ 844 (1915)
+++.|||+|.+||++..| .-|++|.=.
T Consensus 621 ~sls~SPngD~LAT~Hvd~~gIylWsNk 648 (910)
T KOG1539|consen 621 TSLSFSPNGDFLATVHVDQNGIYLWSNK 648 (910)
T ss_pred eeeEECCCCCEEEEEEecCceEEEEEch
Confidence 999999999999999988 569999633
|
|
| >KOG0772|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.3e-27 Score=272.03 Aligned_cols=302 Identities=14% Similarity=0.165 Sum_probs=238.0
Q ss_pred eEEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCc----EEEEE-eCCCCCEEEEEEeCCCCEEEEEeCCCcEE
Q psy9598 469 HYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGK----LLATL-RGCSGEISDIAIDNRNILLAAGTVDKTIR 543 (1915)
Q Consensus 469 ~~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~----~~~~l-~gH~~~I~~Lafspdg~~LaSgs~DgtIr 543 (1915)
...|.+|+..|.++++.|.|-+|+|||.|.+|++||+.... ..+.| ..-...|.+++|++.|..|++.+....++
T Consensus 160 Ei~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqak 239 (641)
T KOG0772|consen 160 EIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAK 239 (641)
T ss_pred eEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCccee
Confidence 34678999999999999999999999999999999986432 22222 22345799999999999998888888999
Q ss_pred EEECCCCceEE------------EeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccc
Q psy9598 544 IWNLQTLAPIS------------VLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFN 611 (1915)
Q Consensus 544 VWDl~tg~~~~------------~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~ 611 (1915)
|+|-.....+. .-.||...++|.+|+|.. ...+++++.||+++|||+.............+
T Consensus 240 l~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~---k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~---- 312 (641)
T KOG0772|consen 240 LLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDN---KEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKP---- 312 (641)
T ss_pred EEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCc---ccceEEecCCCcEEEEecCCchhheeEEeecc----
Confidence 99976433322 235899999999999964 58999999999999999987654333222211
Q ss_pred cccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCC--CeeEEEEcCCCCEEEEEeCCCcEEE
Q psy9598 612 ERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSD--KVDSIQWSHSHLRFVSGSRDGTALI 689 (1915)
Q Consensus 612 ~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~--~V~sl~fspdg~~L~sgs~DG~I~I 689 (1915)
..+....++.|+|+++|.+||+|+.||.|.+|+..+......+..-.+|.. .|+||.||++|++|++-+.|+++++
T Consensus 313 --~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKv 390 (641)
T KOG0772|consen 313 --AGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKV 390 (641)
T ss_pred --CCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceee
Confidence 124456789999999999999999999999999855444444555678887 8999999999999999999999999
Q ss_pred EEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEe-----cCCeEEEEECCCCceEEEeeCCC
Q psy9598 690 WYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAIN-----FNFQIKIWDAFNGDLVQVLKGHT 764 (1915)
Q Consensus 690 WDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~-----~Dg~I~vwD~~tg~~i~~l~gH~ 764 (1915)
||++........ .........-+.++|||+..+|++|.+ ..|.+.+||..+...+..+.-..
T Consensus 391 WDLrq~kkpL~~-------------~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~ 457 (641)
T KOG0772|consen 391 WDLRQFKKPLNV-------------RTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIST 457 (641)
T ss_pred eeccccccchhh-------------hcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCC
Confidence 999876521100 001112334467899999999999875 35689999999999999998888
Q ss_pred CCeEEEEEccCCCCEEEEEecCceEEEEE
Q psy9598 765 NEVFVLESHPFDSRVLLSAGHDGLIIIWD 793 (1915)
Q Consensus 765 ~~V~sl~~sp~dg~~LaSgs~DG~I~IWd 793 (1915)
..|..+.||| .-+.|+.|+.||+++||=
T Consensus 458 aSvv~~~Whp-kLNQi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 458 ASVVRCLWHP-KLNQIFAGSGDGTAHVYY 485 (641)
T ss_pred ceEEEEeecc-hhhheeeecCCCceEEEE
Confidence 8899999999 777788888899998863
|
|
| >KOG0313|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.4e-27 Score=263.02 Aligned_cols=294 Identities=19% Similarity=0.294 Sum_probs=239.5
Q ss_pred CCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCC---CEEEEEeCCCcEEEEECCCC
Q psy9598 474 GHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRN---ILLAAGTVDKTIRIWNLQTL 550 (1915)
Q Consensus 474 gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg---~~LaSgs~DgtIrVWDl~tg 550 (1915)
-|.+.|.+|... +.+|+||+.||+++|||. .|+.+.++.||.++|.+++|...+ ..|+++|.|.++++|-++.+
T Consensus 103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~ 179 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVG 179 (423)
T ss_pred cchhhhhhhccc--CceEEEeecCCeeEEEec-CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCc
Confidence 588999999888 789999999999999996 899999999999999988885433 36999999999999999876
Q ss_pred ce----EEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCcc--ccceec-----------cCccccccc
Q psy9598 551 AP----ISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDID--ISKTVF-----------HEPVMFNER 613 (1915)
Q Consensus 551 ~~----~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~--~~~~~~-----------~~~~~~~~~ 613 (1915)
.. +..-.||...|-+|...+ ++..+++||.|.+|.||+..+... +..... ...-.....
T Consensus 180 ~~~~~~~~~~~GHk~~V~sVsv~~----sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vt 255 (423)
T KOG0313|consen 180 ENKVKALKVCRGHKRSVDSVSVDS----SGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVT 255 (423)
T ss_pred hhhhhHHhHhcccccceeEEEecC----CCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEE
Confidence 54 334459999999999988 458999999999999999322211 000000 011112234
Q ss_pred cCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEcc
Q psy9598 614 IRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYK 693 (1915)
Q Consensus 614 ~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~ 693 (1915)
+.+|...|.++.|++ ...+++++.|++|+.||+... ..+..+. ....++||.+++...+|++|+.|..|++||.+
T Consensus 256 l~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg---~~~~~~~-~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR 330 (423)
T KOG0313|consen 256 LEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETG---GLKSTLT-TNKSLNCISYSPLSKLLASGSSDRHIRLWDPR 330 (423)
T ss_pred ecccccceeeEEEcC-CCceEeecccceEEEEEeecc---cceeeee-cCcceeEeecccccceeeecCCCCceeecCCC
Confidence 668999999999998 568999999999999999543 3333332 34578999999999999999999999999998
Q ss_pred CCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCc-eEEEeeCCCCCeEEEEE
Q psy9598 694 CSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGD-LVQVLKGHTNEVFVLES 772 (1915)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~-~i~~l~gH~~~V~sl~~ 772 (1915)
++.- ......+.+|.+.|.++.|+|...+++++++.|+++++||+++.. ++..+.+|...|.++.|
T Consensus 331 ~~~g-------------s~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW 397 (423)
T KOG0313|consen 331 TGDG-------------SVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDW 397 (423)
T ss_pred CCCC-------------ceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEec
Confidence 7752 122345677999999999999999988887779999999999877 99999999999999999
Q ss_pred ccCCCCEEEEEecCceEEEEEC
Q psy9598 773 HPFDSRVLLSAGHDGLIIIWDI 794 (1915)
Q Consensus 773 sp~dg~~LaSgs~DG~I~IWdl 794 (1915)
+. +.+|+|||.|.+|+|+.-
T Consensus 398 ~~--~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 398 NE--GGLIVSGGADNKLRIFKG 417 (423)
T ss_pred cC--CceEEeccCcceEEEecc
Confidence 84 789999999999999864
|
|
| >KOG0285|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.2e-27 Score=263.28 Aligned_cols=275 Identities=18% Similarity=0.304 Sum_probs=236.1
Q ss_pred ccccccCCCeEEEecccCCceeeeEEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEE
Q psy9598 446 REYSGPLSRSLMISSHKYSNLRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIA 525 (1915)
Q Consensus 446 r~~tg~~d~~~~i~~~~~~~~~~~~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~La 525 (1915)
-+.+|+.|+++.||+.....++ .+|.||...|..|+||+-..||++++.|+.|+.||+...+.++.+.||-+.|.||+
T Consensus 165 wf~tgs~DrtikIwDlatg~Lk--ltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~ 242 (460)
T KOG0285|consen 165 WFATGSADRTIKIWDLATGQLK--LTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLD 242 (460)
T ss_pred eEEecCCCceeEEEEcccCeEE--EeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEe
Confidence 3568999999999987666554 58999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceecc
Q psy9598 526 IDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFH 605 (1915)
Q Consensus 526 fspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~ 605 (1915)
.+|.-..|++|+.|.+++|||+++...++++.||..+|.++.+.|.. ..+++||.|++|++||+..+.....+.
T Consensus 243 lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~d----pqvit~S~D~tvrlWDl~agkt~~tlt-- 316 (460)
T KOG0285|consen 243 LHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTD----PQVITGSHDSTVRLWDLRAGKTMITLT-- 316 (460)
T ss_pred ccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCC----CceEEecCCceEEEeeeccCceeEeee--
Confidence 99999999999999999999999999999999999999999999855 689999999999999999886544333
Q ss_pred CccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCC
Q psy9598 606 EPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDG 685 (1915)
Q Consensus 606 ~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG 685 (1915)
.|...|.|++.+|....+|+++.| .|+-|++ .....+..+.+|+.-|++++...+| ++++|+..|
T Consensus 317 ----------~hkksvral~lhP~e~~fASas~d-nik~w~~---p~g~f~~nlsgh~~iintl~~nsD~-v~~~G~dng 381 (460)
T KOG0285|consen 317 ----------HHKKSVRALCLHPKENLFASASPD-NIKQWKL---PEGEFLQNLSGHNAIINTLSVNSDG-VLVSGGDNG 381 (460)
T ss_pred ----------cccceeeEEecCCchhhhhccCCc-cceeccC---CccchhhccccccceeeeeeeccCc-eEEEcCCce
Confidence 456789999999999999999887 6899998 4445566689999999999988776 789999999
Q ss_pred cEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECC
Q psy9598 686 TALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAF 752 (1915)
Q Consensus 686 ~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~ 752 (1915)
.|.+||.+++-...... .............|.+.||+..|..|++|.. |.+|++|.-.
T Consensus 382 ~~~fwdwksg~nyQ~~~--------t~vqpGSl~sEagI~as~fDktg~rlit~ea-dKtIk~~keD 439 (460)
T KOG0285|consen 382 SIMFWDWKSGHNYQRGQ--------TIVQPGSLESEAGIFASCFDKTGSRLITGEA-DKTIKMYKED 439 (460)
T ss_pred EEEEEecCcCccccccc--------ccccCCccccccceeEEeecccCceEEeccC-CcceEEEecc
Confidence 99999999876332110 0111122234578999999999999999998 9999999743
|
|
| >KOG0643|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.7e-27 Score=252.20 Aligned_cols=297 Identities=16% Similarity=0.221 Sum_probs=241.5
Q ss_pred EEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEe
Q psy9598 513 TLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWK 592 (1915)
Q Consensus 513 ~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWD 592 (1915)
.+.||..+|+.|.++.+|.+|+||+.|.++.||--.+|+.+.++.||++.|+|+...-. ...|++|+.|.++++||
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~----s~~liTGSAD~t~kLWD 80 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWD----SKHLITGSADQTAKLWD 80 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCC----cceeeeccccceeEEEE
Confidence 36799999999999999999999999999999999999999999999999999999864 48999999999999999
Q ss_pred cccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeC-----CCeEEEEEecCCC----CCceeEEeccCC
Q psy9598 593 YKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSG-----DHHVRVYKMDGVD----SPLGILEVEEHS 663 (1915)
Q Consensus 593 l~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~-----Dg~I~IwDl~~~~----~~~~i~~l~~h~ 663 (1915)
+.+++++....+. ..|..+.|+.+|++++.... .+.|.++|++... ...++..+..+.
T Consensus 81 v~tGk~la~~k~~-------------~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~ 147 (327)
T KOG0643|consen 81 VETGKQLATWKTN-------------SPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPD 147 (327)
T ss_pred cCCCcEEEEeecC-------------CeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCc
Confidence 9999987777665 77899999999998877654 4689999996332 344567778888
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecC
Q psy9598 664 DKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFN 743 (1915)
Q Consensus 664 ~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~D 743 (1915)
+.++.+.|.|-+.+|++|..||.|.+||++++.... .....|...|+.++++++..++++++. |
T Consensus 148 skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v---------------~s~~~h~~~Ind~q~s~d~T~FiT~s~-D 211 (327)
T KOG0643|consen 148 SKITSALWGPLGETIIAGHEDGSISIYDARTGKELV---------------DSDEEHSSKINDLQFSRDRTYFITGSK-D 211 (327)
T ss_pred cceeeeeecccCCEEEEecCCCcEEEEEcccCceee---------------echhhhccccccccccCCcceEEeccc-C
Confidence 999999999999999999999999999999886332 122346779999999999999999999 9
Q ss_pred CeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEEecCc-eEEEEECCCCccccceeeeee-------ecCCCCc
Q psy9598 744 FQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDG-LIIIWDILSSKQRGYKWFHNI-------VEGQGEG 815 (1915)
Q Consensus 744 g~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG-~I~IWdl~s~~~~~~~~~~~~-------~~~~~~~ 815 (1915)
.+.++||+.+.+++.++. ...+|++.+++|....+++.||.+. -|.-=+.+.|+. ...|... ....|.|
T Consensus 212 ttakl~D~~tl~v~Kty~-te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKF--EArFyh~i~eEEigrvkGHFG 288 (327)
T KOG0643|consen 212 TTAKLVDVRTLEVLKTYT-TERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKF--EARFYHLIFEEEIGRVKGHFG 288 (327)
T ss_pred ccceeeeccceeeEEEee-ecccccceecccccceEEecCCceeeeeeeecccccch--hhhHHHHHHHHHhcccccccc
Confidence 999999999999999987 4458999999995555555555442 122222222221 1111100 0125779
Q ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q psy9598 816 ALFDGKWSPDGTTCALTDSYGHLLVYGLGG 845 (1915)
Q Consensus 816 ~V~~vafSpdg~~Lasg~~dG~I~Iwdl~s 845 (1915)
+|.+++|+|+|...++|+.||.|+|..+..
T Consensus 289 PINsvAfhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 289 PINSVAFHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred CcceeEECCCCcccccCCCCceEEEEEecc
Confidence 999999999999999999999999987654
|
|
| >KOG1539|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.9e-25 Score=269.97 Aligned_cols=407 Identities=19% Similarity=0.203 Sum_probs=310.4
Q ss_pred ccCccccccCCCeEEEecccCC----ceeeeEEecCCCCcEEEEEEcCC--CCEEEEEECCCcEEEEECCCCcEEEEEeC
Q psy9598 443 LRSREYSGPLSRSLMISSHKYS----NLRQHYVNLGHLSAVFCVLFDKL--GEVIVTGADDLLIKLWRARDGKLLATLRG 516 (1915)
Q Consensus 443 l~~r~~tg~~d~~~~i~~~~~~----~~~~~~~l~gH~~~V~~vafspd--g~~LaTGs~Dg~I~IWd~~tg~~~~~l~g 516 (1915)
...-.+++..++.+.+|..... .++ ...+..-.+.|+++. +|. =+-|+.|+.+|.++||++.+++.++++.+
T Consensus 123 fGe~lia~d~~~~l~vw~~s~~~~e~~l~-~~~~~~~~~~Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~ 200 (910)
T KOG1539|consen 123 FGEHLIAVDISNILFVWKTSSIQEELYLQ-STFLKVEGDFITALL-HPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQE 200 (910)
T ss_pred ecceEEEEEccCcEEEEEecccccccccc-ceeeeccCCceeeEe-cchhheeeEEEeecCCcEEEEEeccCcEEEEecc
Confidence 3344556677888888865442 222 112222223377764 453 35688999999999999999999999999
Q ss_pred CCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccC
Q psy9598 517 CSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLD 596 (1915)
Q Consensus 517 H~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~ 596 (1915)
+...|+++.-+|-=..+|.|..+|+|.|+++..++.+.++....+.|++++|..++ ..++++|+..|.+.+||+...
T Consensus 201 ~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG---~p~las~~~~G~m~~wDLe~k 277 (910)
T KOG1539|consen 201 FFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDG---NPLLASGRSNGDMAFWDLEKK 277 (910)
T ss_pred cccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCC---CeeEEeccCCceEEEEEcCCC
Confidence 99999999999988899999999999999999999999998657999999999754 478888999999999999877
Q ss_pred ccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCC-CCCceeEEeccCCCCeeEEEEc-CC
Q psy9598 597 IDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGV-DSPLGILEVEEHSDKVDSIQWS-HS 674 (1915)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~-~~~~~i~~l~~h~~~V~sl~fs-pd 674 (1915)
..+.... ..|.+.|..+.|.+....|++++.|..+++|=.+.. ..+..+..-.||..+..||.|. .+
T Consensus 278 kl~~v~~-----------nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~ 346 (910)
T KOG1539|consen 278 KLINVTR-----------NAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQ 346 (910)
T ss_pred eeeeeee-----------ccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccC
Confidence 5433222 245678899999999999999999999998876533 3355556668999999999998 77
Q ss_pred CCEEEEEeCCCcEEEEEccCCce----EE-----------ee------------e-------------------------
Q psy9598 675 HLRFVSGSRDGTALIWYYKCSQW----RF-----------IR------------L------------------------- 702 (1915)
Q Consensus 675 g~~L~sgs~DG~I~IWDl~~~~~----~~-----------~~------------~------------------------- 702 (1915)
|.++.+++.|++++.+++..... .. .. .
T Consensus 347 g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~t 426 (910)
T KOG1539|consen 347 GHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYT 426 (910)
T ss_pred cEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEE
Confidence 88999999999988887642110 00 00 0
Q ss_pred -cccccCC-CC-ccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEe---eCCCCCeEEEEEccCC
Q psy9598 703 -DMNTCLP-HT-KETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVL---KGHTNEVFVLESHPFD 776 (1915)
Q Consensus 703 -~~~~~~~-~~-~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l---~gH~~~V~sl~~sp~d 776 (1915)
....... .+ ............+++++.++.|++.+.|.+ .|.|-+|++.+|-....+ ..|.++|++|+... .
T Consensus 427 W~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S-~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~-~ 504 (910)
T KOG1539|consen 427 WNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYS-KGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDG-T 504 (910)
T ss_pred EeccCcccccEEecCccccccCcceEEEEEeccCceEEEecc-CCeEEEEEcccCeeecccccCccccCceeEEEecC-C
Confidence 0000000 00 000011113467899999999999999999 999999999999999888 58999999999987 7
Q ss_pred CCEEEEEecCceEEEEECCCCccccceeee-------------------------e-ee----------cCCCCcceEEE
Q psy9598 777 SRVLLSAGHDGLIIIWDILSSKQRGYKWFH-------------------------N-IV----------EGQGEGALFDG 820 (1915)
Q Consensus 777 g~~LaSgs~DG~I~IWdl~s~~~~~~~~~~-------------------------~-~~----------~~~~~~~V~~v 820 (1915)
++.++|++.+|.+.+||...... +..+. . ++ .-+|.+.|+++
T Consensus 505 n~~~vsa~~~Gilkfw~f~~k~l--~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~ 582 (910)
T KOG1539|consen 505 NRLLVSAGADGILKFWDFKKKVL--KKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDM 582 (910)
T ss_pred CceEEEccCcceEEEEecCCcce--eeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeee
Confidence 88999999999999999977552 11100 0 00 01356789999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEeCCCCcccccC-----CCceeecCCCCeeeecC
Q psy9598 821 KWSPDGTTCALTDSYGHLLVYGLGGFKRPQNI-----PRELFFHTDYRTLNRPN 869 (1915)
Q Consensus 821 afSpdg~~Lasg~~dG~I~Iwdl~s~~~~~~l-----~~~~~F~~d~~~Lv~~~ 869 (1915)
+|||||++|++++.|++|++||+.++.++-.+ ...+.|+|+|..|+...
T Consensus 583 ~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~H 636 (910)
T KOG1539|consen 583 TFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVH 636 (910)
T ss_pred EeCCCCcEEEEeecCCcEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEEE
Confidence 99999999999999999999999999887554 33789999999998543
|
|
| >KOG0278|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.3e-27 Score=249.47 Aligned_cols=290 Identities=17% Similarity=0.262 Sum_probs=250.4
Q ss_pred EEecCCCCcEEEEEEc---CCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEE
Q psy9598 470 YVNLGHLSAVFCVLFD---KLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWN 546 (1915)
Q Consensus 470 ~~l~gH~~~V~~vafs---pdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWD 546 (1915)
.+..||+.+|..++|| |+|-+|++++.||.-.+-+-.||..+.+|.||.+.|.+.+++.+....|+++.|-+.+|||
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~ 87 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWD 87 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhh
Confidence 3556999999999998 5899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEE
Q psy9598 547 LQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSF 626 (1915)
Q Consensus 547 l~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~f 626 (1915)
.-+|..++.|. |..-|.+++|+.+ .++|++|+.+..++|||+..... ....+.+|.+.|..+.|
T Consensus 88 a~tgdelhsf~-hkhivk~~af~~d----s~~lltgg~ekllrvfdln~p~A-----------pp~E~~ghtg~Ir~v~w 151 (334)
T KOG0278|consen 88 AVTGDELHSFE-HKHIVKAVAFSQD----SNYLLTGGQEKLLRVFDLNRPKA-----------PPKEISGHTGGIRTVLW 151 (334)
T ss_pred hhhhhhhhhhh-hhheeeeEEeccc----chhhhccchHHHhhhhhccCCCC-----------CchhhcCCCCcceeEEE
Confidence 99999999885 8889999999984 49999999999999999876542 12234578899999999
Q ss_pred CCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccc
Q psy9598 627 SPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNT 706 (1915)
Q Consensus 627 spdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~ 706 (1915)
....+.|++.+.|++|++||.++. ..+..+ ....+|+++.++++|.+|.+ ...+.|.+||..+...+..
T Consensus 152 c~eD~~iLSSadd~tVRLWD~rTg---t~v~sL-~~~s~VtSlEvs~dG~ilTi-a~gssV~Fwdaksf~~lKs------ 220 (334)
T KOG0278|consen 152 CHEDKCILSSADDKTVRLWDHRTG---TEVQSL-EFNSPVTSLEVSQDGRILTI-AYGSSVKFWDAKSFGLLKS------ 220 (334)
T ss_pred eccCceEEeeccCCceEEEEeccC---cEEEEE-ecCCCCcceeeccCCCEEEE-ecCceeEEeccccccceee------
Confidence 999999999999999999999543 334433 34678999999999976555 4667899999887664331
Q ss_pred cCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEe-eCCCCCeEEEEEccCCCCEEEEEec
Q psy9598 707 CLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVL-KGHTNEVFVLESHPFDSRVLLSAGH 785 (1915)
Q Consensus 707 ~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l-~gH~~~V~sl~~sp~dg~~LaSgs~ 785 (1915)
......|.+.+++|+..++++|+. |+.++.||..+|..+..+ ++|-++|.||.|+| +|.+.++|+.
T Consensus 221 -----------~k~P~nV~SASL~P~k~~fVaGge-d~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSP-dGE~yAsGSE 287 (334)
T KOG0278|consen 221 -----------YKMPCNVESASLHPKKEFFVAGGE-DFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSP-DGELYASGSE 287 (334)
T ss_pred -----------ccCccccccccccCCCceEEecCc-ceEEEEEeccCCceeeecccCCCCceEEEEECC-CCceeeccCC
Confidence 123456888999999988888888 999999999999999986 89999999999999 9999999999
Q ss_pred CceEEEEECCCCcc
Q psy9598 786 DGLIIIWDILSSKQ 799 (1915)
Q Consensus 786 DG~I~IWdl~s~~~ 799 (1915)
||+|+||....++.
T Consensus 288 DGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 288 DGTIRLWQTTPGKT 301 (334)
T ss_pred CceEEEEEecCCCc
Confidence 99999999977665
|
|
| >KOG0274|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=8e-26 Score=286.11 Aligned_cols=278 Identities=24% Similarity=0.408 Sum_probs=243.7
Q ss_pred CCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEE-EeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCce
Q psy9598 474 GHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLAT-LRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAP 552 (1915)
Q Consensus 474 gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~-l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~ 552 (1915)
.|...|+|..|. +.++++|+.+++|++|+..++..+.+ +.||.+.|.+++|...+.+|++|+.|.+++|||+.+|.+
T Consensus 206 ~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C 283 (537)
T KOG0274|consen 206 TDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGEC 283 (537)
T ss_pred cCcchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcE
Confidence 367889999999 67999999999999999999999988 999999999999998888999999999999999999999
Q ss_pred EEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcE
Q psy9598 553 ISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLF 632 (1915)
Q Consensus 553 ~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~ 632 (1915)
++++.+|...|.++...+ .++++|+.|.+|++|++.++..+..+ .+|.+.|.|+.++ +.+
T Consensus 284 ~~~l~gh~stv~~~~~~~------~~~~sgs~D~tVkVW~v~n~~~l~l~------------~~h~~~V~~v~~~--~~~ 343 (537)
T KOG0274|consen 284 THSLQGHTSSVRCLTIDP------FLLVSGSRDNTVKVWDVTNGACLNLL------------RGHTGPVNCVQLD--EPL 343 (537)
T ss_pred EEEecCCCceEEEEEccC------ceEeeccCCceEEEEeccCcceEEEe------------ccccccEEEEEec--CCE
Confidence 999999999999999987 78899999999999999987654333 2467999999998 779
Q ss_pred EEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCC-ceEEeeecccccCCCC
Q psy9598 633 LATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCS-QWRFIRLDMNTCLPHT 711 (1915)
Q Consensus 633 Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~-~~~~~~~~~~~~~~~~ 711 (1915)
|++|+.||+|+|||+. ...++..+.+|.+.|.++.+... .++++|+.|++|++||+.+. +++.
T Consensus 344 lvsgs~d~~v~VW~~~---~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~------------ 407 (537)
T KOG0274|consen 344 LVSGSYDGTVKVWDPR---TGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIH------------ 407 (537)
T ss_pred EEEEecCceEEEEEhh---hceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhh------------
Confidence 9999999999999994 67889999999999999988765 79999999999999999988 5433
Q ss_pred ccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeC-CCCCeEEEEEccCCCCEEEEEecCceEE
Q psy9598 712 KETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKG-HTNEVFVLESHPFDSRVLLSAGHDGLII 790 (1915)
Q Consensus 712 ~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~g-H~~~V~sl~~sp~dg~~LaSgs~DG~I~ 790 (1915)
...+|..-+..+. ..+.+|++++. |++|++||..+++++.++.+ |.+.|+++++. ...+++++.||++.
T Consensus 408 ----tl~~h~~~v~~l~--~~~~~Lvs~~a-D~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~---~~~il~s~~~~~~~ 477 (537)
T KOG0274|consen 408 ----TLQGHTSLVSSLL--LRDNFLVSSSA-DGTIKLWDAEEGECLRTLEGRHVGGVSALALG---KEEILCSSDDGSVK 477 (537)
T ss_pred ----hhcCCcccccccc--cccceeEeccc-cccEEEeecccCceeeeeccCCcccEEEeecC---cceEEEEecCCeeE
Confidence 2233444454443 45778888887 99999999999999999999 77889988875 36789999999999
Q ss_pred EEECCCCcc
Q psy9598 791 IWDILSSKQ 799 (1915)
Q Consensus 791 IWdl~s~~~ 799 (1915)
+||+.++..
T Consensus 478 l~dl~~~~~ 486 (537)
T KOG0274|consen 478 LWDLRSGTL 486 (537)
T ss_pred EEecccCch
Confidence 999999988
|
|
| >KOG1446|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.6e-25 Score=243.82 Aligned_cols=296 Identities=15% Similarity=0.260 Sum_probs=244.1
Q ss_pred eeeeEEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeC--CCcEE
Q psy9598 466 LRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTV--DKTIR 543 (1915)
Q Consensus 466 ~~~~~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~--DgtIr 543 (1915)
++..+.|..-.+.|++|.|+.+|.+|++++.|.+|+|||..+|+.+.++..+.-.|..++|......++.++. |.+||
T Consensus 4 ~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIr 83 (311)
T KOG1446|consen 4 FRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIR 83 (311)
T ss_pred cccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceE
Confidence 4444556666789999999999999999999999999999999999999988889999999888777777776 88999
Q ss_pred EEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEE
Q psy9598 544 IWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILC 623 (1915)
Q Consensus 544 VWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~ 623 (1915)
..++.+.+.+..+.||...|++|+.+|.. ..+++++.|++|++||++...+...+... .-.+
T Consensus 84 yLsl~dNkylRYF~GH~~~V~sL~~sP~~----d~FlS~S~D~tvrLWDlR~~~cqg~l~~~--------------~~pi 145 (311)
T KOG1446|consen 84 YLSLHDNKYLRYFPGHKKRVNSLSVSPKD----DTFLSSSLDKTVRLWDLRVKKCQGLLNLS--------------GRPI 145 (311)
T ss_pred EEEeecCceEEEcCCCCceEEEEEecCCC----CeEEecccCCeEEeeEecCCCCceEEecC--------------CCcc
Confidence 99999999999999999999999999954 89999999999999999987665444332 2346
Q ss_pred EEECCCCcEEEEEeCCCeEEEEEecCC-CCCceeEEec-cCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEee
Q psy9598 624 SSFSPGGLFLATGSGDHHVRVYKMDGV-DSPLGILEVE-EHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIR 701 (1915)
Q Consensus 624 l~fspdg~~Lasgs~Dg~I~IwDl~~~-~~~~~i~~l~-~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~ 701 (1915)
++|.|.|-++|+|.....|++||++.. ..+.....+. +.....+.|.|+|+|++|+.++..+.+.+.|.-+|......
T Consensus 146 ~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tf 225 (311)
T KOG1446|consen 146 AAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTF 225 (311)
T ss_pred eeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeE
Confidence 899999999999988889999999764 3344444444 55677899999999999999999999999998888744322
Q ss_pred ecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeC-CCCCeEEEEEccCCCCEE
Q psy9598 702 LDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKG-HTNEVFVLESHPFDSRVL 780 (1915)
Q Consensus 702 ~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~g-H~~~V~sl~~sp~dg~~L 780 (1915)
... .....--...+|+|++.+|++|.. ||+|.+|++.+|..+..+.+ +.+++.++.|+| .+.
T Consensus 226 s~~-------------~~~~~~~~~a~ftPds~Fvl~gs~-dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP---~~~ 288 (311)
T KOG1446|consen 226 SGY-------------PNAGNLPLSATFTPDSKFVLSGSD-DGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNP---RYA 288 (311)
T ss_pred eec-------------cCCCCcceeEEECCCCcEEEEecC-CCcEEEEEcCCCcEeeEecCCCCCCccccccCC---cee
Confidence 111 111111256889999999999998 99999999999999999998 789999999999 444
Q ss_pred EEEecCceEEEEECCC
Q psy9598 781 LSAGHDGLIIIWDILS 796 (1915)
Q Consensus 781 aSgs~DG~I~IWdl~s 796 (1915)
.-++.+..+.+|=...
T Consensus 289 mf~sa~s~l~fw~p~~ 304 (311)
T KOG1446|consen 289 MFVSASSNLVFWLPDE 304 (311)
T ss_pred eeeecCceEEEEeccc
Confidence 4444566788886543
|
|
| >KOG1407|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-25 Score=242.76 Aligned_cols=277 Identities=19% Similarity=0.271 Sum_probs=238.4
Q ss_pred EEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEE--EEeCCCCCEEEEEEeCC-CCEEEEEeCCCcEEEEE
Q psy9598 470 YVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLA--TLRGCSGEISDIAIDNR-NILLAAGTVDKTIRIWN 546 (1915)
Q Consensus 470 ~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~--~l~gH~~~I~~Lafspd-g~~LaSgs~DgtIrVWD 546 (1915)
+.+.+|...|.+|+|+.+|..|++|+.|+++.||++..+.... ...||.+.|-.++|+|. ..+|++++.|.+|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 5678999999999999999999999999999999998876554 35799999999999874 56899999999999999
Q ss_pred CCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEE
Q psy9598 547 LQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSF 626 (1915)
Q Consensus 547 l~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~f 626 (1915)
+.+++++..+....+.| -+.|+|. +.+++.++.|..|.+.|.++.+......+. ..+.-++|
T Consensus 94 ~r~~k~~~~i~~~~eni-~i~wsp~----g~~~~~~~kdD~it~id~r~~~~~~~~~~~-------------~e~ne~~w 155 (313)
T KOG1407|consen 94 IRSGKCTARIETKGENI-NITWSPD----GEYIAVGNKDDRITFIDARTYKIVNEEQFK-------------FEVNEISW 155 (313)
T ss_pred eccCcEEEEeeccCcce-EEEEcCC----CCEEEEecCcccEEEEEecccceeehhccc-------------ceeeeeee
Confidence 99999999887655554 5789994 589999999999999999887654443333 55778899
Q ss_pred CCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccc
Q psy9598 627 SPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNT 706 (1915)
Q Consensus 627 spdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~ 706 (1915)
+-++.+++.....|+|.|... .....+..+.+|.....||.|+|+|++|++|+.|..+.+||+...-|...
T Consensus 156 ~~~nd~Fflt~GlG~v~ILsy---psLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~------ 226 (313)
T KOG1407|consen 156 NNSNDLFFLTNGLGCVEILSY---PSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERC------ 226 (313)
T ss_pred cCCCCEEEEecCCceEEEEec---cccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhhee------
Confidence 988888888888899999988 46677888999999999999999999999999999999999986654432
Q ss_pred cCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEEecC
Q psy9598 707 CLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHD 786 (1915)
Q Consensus 707 ~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~D 786 (1915)
...+.-+|..+.||.+|++|++++. |..|-|=++.+|..+..+. |.++.+.|+||| ...+||-++.|
T Consensus 227 ----------isRldwpVRTlSFS~dg~~lASaSE-Dh~IDIA~vetGd~~~eI~-~~~~t~tVAWHP-k~~LLAyA~dd 293 (313)
T KOG1407|consen 227 ----------ISRLDWPVRTLSFSHDGRMLASASE-DHFIDIAEVETGDRVWEIP-CEGPTFTVAWHP-KRPLLAYACDD 293 (313)
T ss_pred ----------eccccCceEEEEeccCcceeeccCc-cceEEeEecccCCeEEEee-ccCCceeEEecC-CCceeeEEecC
Confidence 2335678999999999999999998 9999999999999999986 788899999999 88888887765
|
|
| >KOG1407|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.9e-25 Score=239.63 Aligned_cols=288 Identities=21% Similarity=0.324 Sum_probs=242.4
Q ss_pred EEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEE--EeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEE
Q psy9598 512 ATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPIS--VLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIG 589 (1915)
Q Consensus 512 ~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~--~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~ 589 (1915)
..+.+|.+.|.+|+|+.+|..|++|+.|+++.||++..+.... ...+|.+.|-.++|+|.. ...|++++.|.+|+
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~---~d~~atas~dk~ir 90 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKH---PDLFATASGDKTIR 90 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCC---CcceEEecCCceEE
Confidence 4567899999999999999999999999999999998775544 456899999999999965 48999999999999
Q ss_pred EEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEE
Q psy9598 590 FWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSI 669 (1915)
Q Consensus 590 iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl 669 (1915)
+||++.+++....... +.-.-++|+|+|.++++|+.|..|.+.|.+... +..-....-.+.-+
T Consensus 91 ~wd~r~~k~~~~i~~~-------------~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~----~~~~~~~~~e~ne~ 153 (313)
T KOG1407|consen 91 IWDIRSGKCTARIETK-------------GENINITWSPDGEYIAVGNKDDRITFIDARTYK----IVNEEQFKFEVNEI 153 (313)
T ss_pred EEEeccCcEEEEeecc-------------CcceEEEEcCCCCEEEEecCcccEEEEEecccc----eeehhcccceeeee
Confidence 9999999876555433 223458899999999999999999999985322 22223345567888
Q ss_pred EEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEE
Q psy9598 670 QWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIW 749 (1915)
Q Consensus 670 ~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vw 749 (1915)
+|+.++.+|+.....|+|.|-.+...+ .......|.....||.|+|+|+++++|+. |..+.+|
T Consensus 154 ~w~~~nd~Fflt~GlG~v~ILsypsLk----------------pv~si~AH~snCicI~f~p~GryfA~GsA-DAlvSLW 216 (313)
T KOG1407|consen 154 SWNNSNDLFFLTNGLGCVEILSYPSLK----------------PVQSIKAHPSNCICIEFDPDGRYFATGSA-DALVSLW 216 (313)
T ss_pred eecCCCCEEEEecCCceEEEEeccccc----------------cccccccCCcceEEEEECCCCceEeeccc-cceeecc
Confidence 999888888888888999997654332 33445668889999999999999999999 9999999
Q ss_pred ECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEE
Q psy9598 750 DAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTC 829 (1915)
Q Consensus 750 D~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~L 829 (1915)
|+...-|++.+.-+.-+|..|.|+. +|++||+|+.|..|-|=++.+|.. +..++ +.++.+.|+|+|...+|
T Consensus 217 D~~ELiC~R~isRldwpVRTlSFS~-dg~~lASaSEDh~IDIA~vetGd~--~~eI~------~~~~t~tVAWHPk~~LL 287 (313)
T KOG1407|consen 217 DVDELICERCISRLDWPVRTLSFSH-DGRMLASASEDHFIDIAEVETGDR--VWEIP------CEGPTFTVAWHPKRPLL 287 (313)
T ss_pred ChhHhhhheeeccccCceEEEEecc-CcceeeccCccceEEeEecccCCe--EEEee------ccCCceeEEecCCCcee
Confidence 9999999999999999999999998 999999999999999999999987 55443 67899999999999999
Q ss_pred EEEeCC---------CeEEEEeCCC
Q psy9598 830 ALTDSY---------GHLLVYGLGG 845 (1915)
Q Consensus 830 asg~~d---------G~I~Iwdl~s 845 (1915)
|.+++| |+|+||++.+
T Consensus 288 AyA~ddk~~d~~reag~vKiFG~~~ 312 (313)
T KOG1407|consen 288 AYACDDKDGDSNREAGTVKIFGLSN 312 (313)
T ss_pred eEEecCCCCccccccceeEEecCCC
Confidence 998755 6788888754
|
|
| >KOG0289|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-25 Score=255.40 Aligned_cols=284 Identities=19% Similarity=0.316 Sum_probs=245.9
Q ss_pred CcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEe
Q psy9598 477 SAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVL 556 (1915)
Q Consensus 477 ~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l 556 (1915)
-.|+++...+....++||+.|..+.++|..+++.+.+|.||+..|+.+.|+++...+++++.|..|+||......+...+
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~ 299 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSS 299 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcccc
Confidence 56788888887789999999999999999999999999999999999999999999999999999999999888888889
Q ss_pred ecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEE
Q psy9598 557 VGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATG 636 (1915)
Q Consensus 557 ~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasg 636 (1915)
..|..+|+.+..+|. +.||++++.||+..|.|+.++.++...... .....+++++|+|||.+|.+|
T Consensus 300 ~~h~~~V~~ls~h~t----geYllsAs~d~~w~Fsd~~~g~~lt~vs~~----------~s~v~~ts~~fHpDgLifgtg 365 (506)
T KOG0289|consen 300 RPHEEPVTGLSLHPT----GEYLLSASNDGTWAFSDISSGSQLTVVSDE----------TSDVEYTSAAFHPDGLIFGTG 365 (506)
T ss_pred ccccccceeeeeccC----CcEEEEecCCceEEEEEccCCcEEEEEeec----------cccceeEEeeEcCCceEEecc
Confidence 999999999999995 499999999999999999999765444322 123568999999999999999
Q ss_pred eCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccc
Q psy9598 637 SGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSD 716 (1915)
Q Consensus 637 s~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~ 716 (1915)
..||.|+|||+. .+..+..+.+|+++|.+|+|+.+|-+|++++.|+.|++||++........
T Consensus 366 t~d~~vkiwdlk---s~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~--------------- 427 (506)
T KOG0289|consen 366 TPDGVVKIWDLK---SQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTI--------------- 427 (506)
T ss_pred CCCceEEEEEcC---CccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhccccee---------------
Confidence 999999999993 34467789999999999999999999999999999999999876522211
Q ss_pred cccccccEEEEEECCCCCEEEEEEecCCeEEEEECC--CCceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEEC
Q psy9598 717 ETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAF--NGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDI 794 (1915)
Q Consensus 717 ~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~--tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl 794 (1915)
.......|.+++|+..|.+|+++++ +-.|++++-. ++.++..+..|.+..+++.|.. ...+++++|.|..++|+.+
T Consensus 428 ~l~~~~~v~s~~fD~SGt~L~~~g~-~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~-~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 428 QLDEKKEVNSLSFDQSGTYLGIAGS-DLQVYICKKKTKSWTEIKELADHSGLSTGVRFGE-HAQYLASTSMDAILRLYAL 505 (506)
T ss_pred eccccccceeEEEcCCCCeEEeecc-eeEEEEEecccccceeeehhhhcccccceeeecc-cceEEeeccchhheEEeec
Confidence 1112337899999999999999977 7677776633 5678888889999999999988 8899999999999888764
|
|
| >KOG0283|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.3e-26 Score=280.28 Aligned_cols=257 Identities=19% Similarity=0.331 Sum_probs=202.7
Q ss_pred CceeeeEEec-CCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCC--------------------------------C--
Q psy9598 464 SNLRQHYVNL-GHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARD--------------------------------G-- 508 (1915)
Q Consensus 464 ~~~~~~~~l~-gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~t--------------------------------g-- 508 (1915)
..+.....+. +|.++|+|+.||+||+|||+||.||.|+||.+.. .
T Consensus 254 sal~~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~ 333 (712)
T KOG0283|consen 254 SALTVVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKIS 333 (712)
T ss_pred eeeEEeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccc
Confidence 3444555666 9999999999999999999999999999998654 0
Q ss_pred --------------------------cEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCCCC
Q psy9598 509 --------------------------KLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGI 562 (1915)
Q Consensus 509 --------------------------~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~ 562 (1915)
++++.|.||.+.|.+|.||.++ +|+|+|.|.|||+|++....|+.+|. |.+.
T Consensus 334 ~~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~-Hndf 411 (712)
T KOG0283|consen 334 SRTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFS-HNDF 411 (712)
T ss_pred ccccccccccCCccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEEe-cCCe
Confidence 1335567999999999999865 89999999999999999999999996 9999
Q ss_pred eEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeE
Q psy9598 563 ITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHV 642 (1915)
Q Consensus 563 V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I 642 (1915)
|+||+|+|. |.++|++||-||.|+||++...+.+....+. .-|++++|+|+|...++|+.+|.+
T Consensus 412 VTcVaFnPv---DDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-------------~lITAvcy~PdGk~avIGt~~G~C 475 (712)
T KOG0283|consen 412 VTCVAFNPV---DDRYFISGSLDGKVRLWSISDKKVVDWNDLR-------------DLITAVCYSPDGKGAVIGTFNGYC 475 (712)
T ss_pred eEEEEeccc---CCCcEeecccccceEEeecCcCeeEeehhhh-------------hhheeEEeccCCceEEEEEeccEE
Confidence 999999995 6799999999999999999877544333332 679999999999999999999999
Q ss_pred EEEEecCCCCCceeEEeccC------CCCeeEEEEcCCCC-EEEEEeCCCcEEEEEccCCceEEeeecccccCCCCcccc
Q psy9598 643 RVYKMDGVDSPLGILEVEEH------SDKVDSIQWSHSHL-RFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETS 715 (1915)
Q Consensus 643 ~IwDl~~~~~~~~i~~l~~h------~~~V~sl~fspdg~-~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~ 715 (1915)
++|++.+..-. .-..+.-| ...|++++|.|... .+++.+.|..|+|+|++....+..+...
T Consensus 476 ~fY~t~~lk~~-~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~----------- 543 (712)
T KOG0283|consen 476 RFYDTEGLKLV-SDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGF----------- 543 (712)
T ss_pred EEEEccCCeEE-EeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhccc-----------
Confidence 99998543211 11111111 22799999997544 6888899999999999765533221110
Q ss_pred ccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCC
Q psy9598 716 DETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNG 754 (1915)
Q Consensus 716 ~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg 754 (1915)
.....-....|+.||++|++++. |..|+||+....
T Consensus 544 ---~n~~SQ~~Asfs~Dgk~IVs~se-Ds~VYiW~~~~~ 578 (712)
T KOG0283|consen 544 ---RNTSSQISASFSSDGKHIVSASE-DSWVYIWKNDSF 578 (712)
T ss_pred ---ccCCcceeeeEccCCCEEEEeec-CceEEEEeCCCC
Confidence 11222345788999999999997 999999998543
|
|
| >KOG0973|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.6e-25 Score=281.29 Aligned_cols=314 Identities=19% Similarity=0.264 Sum_probs=250.4
Q ss_pred CCCCEEEEEEeCCCCEEEEEe--CCCcEEEEECCC------------CceEEEeecCCCCeEEEEeccCccCCCcEEEEE
Q psy9598 517 CSGEISDIAIDNRNILLAAGT--VDKTIRIWNLQT------------LAPISVLVGHQGIITGVNFCPLEVNGFNYLAST 582 (1915)
Q Consensus 517 H~~~I~~Lafspdg~~LaSgs--~DgtIrVWDl~t------------g~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sg 582 (1915)
+...|.+|..+|+|..+|||+ .||.++||+... ...+.++..|.+.|+|+.|+| +|.+||+|
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~----dG~~lAsG 87 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSP----DGSYLASG 87 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECC----CCCeEeec
Confidence 355699999999999999999 899999998753 234667788999999999999 55999999
Q ss_pred eCCCeEEEEecccCcccccee-------ccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCce
Q psy9598 583 STDGCIGFWKYKLDIDISKTV-------FHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLG 655 (1915)
Q Consensus 583 s~DgtI~iWDl~~~~~~~~~~-------~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~ 655 (1915)
|.|+.|.||.... ....... ..........+.+|.+.|..++|+|++.+|++++.|++|.||+.. +...
T Consensus 88 SDD~~v~iW~~~~-~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~---tF~~ 163 (942)
T KOG0973|consen 88 SDDRLVMIWERAE-IGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAK---TFEL 163 (942)
T ss_pred cCcceEEEeeecc-cCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccc---ccee
Confidence 9999999999874 1111111 001122334567899999999999999999999999999999984 4477
Q ss_pred eEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCE
Q psy9598 656 ILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRW 735 (1915)
Q Consensus 656 i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~ 735 (1915)
+..+.+|.+.|..+.|.|-|++|++-+.|++|+||.+..-....... ...........+..+.|||||.+
T Consensus 164 ~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It----------~pf~~~~~~T~f~RlSWSPDG~~ 233 (942)
T KOG0973|consen 164 LKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSIT----------KPFEESPLTTFFLRLSWSPDGHH 233 (942)
T ss_pred eeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeec----------cchhhCCCcceeeecccCCCcCe
Confidence 88899999999999999999999999999999999866543332211 11122334556788999999999
Q ss_pred EEEEEecC---CeEEEEECCCCceEEEeeCCCCCeEEEEEccC------C------CC----EEEEEecCceEEEEECCC
Q psy9598 736 VITAINFN---FQIKIWDAFNGDLVQVLKGHTNEVFVLESHPF------D------SR----VLLSAGHDGLIIIWDILS 796 (1915)
Q Consensus 736 L~t~s~~D---g~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~------d------g~----~LaSgs~DG~I~IWdl~s 796 (1915)
|++....+ .++.|.+-.+.+.-..|-||.+++.++.|+|. . +. ++|+||.|++|.||....
T Consensus 234 las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~ 313 (942)
T KOG0973|consen 234 LASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTAL 313 (942)
T ss_pred ecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCC
Confidence 99876533 36888888888888899999999999999982 1 11 788999999999999977
Q ss_pred CccccceeeeeeecCCCCcceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcccccCCC
Q psy9598 797 SKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGGFKRPQNIPR 854 (1915)
Q Consensus 797 ~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl~s~~~~~~l~~ 854 (1915)
.++ +...+++ ....|.+++|+|||..|.+++.||+|.++.+...+.-..++.
T Consensus 314 ~RP--l~vi~~l----f~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ElG~~ls~ 365 (942)
T KOG0973|consen 314 PRP--LFVIHNL----FNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKELGVALSE 365 (942)
T ss_pred CCc--hhhhhhh----hcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHHhCcccCh
Confidence 766 5544422 346899999999999999999999999999998766555544
|
|
| >KOG0300|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-25 Score=244.87 Aligned_cols=296 Identities=21% Similarity=0.341 Sum_probs=247.1
Q ss_pred ceeeeEEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEE
Q psy9598 465 NLRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRI 544 (1915)
Q Consensus 465 ~~~~~~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrV 544 (1915)
.+.+.+.|.||.+.|+.|+.......+.|++.|.+.+||.+.+|.|+.++.||.+.|+||.|++.+.++++++.|++..|
T Consensus 137 ~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHI 216 (481)
T KOG0300|consen 137 KFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHI 216 (481)
T ss_pred eEeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHH
Confidence 35667788999999999999988889999999999999999999999999999999999999999999999999999999
Q ss_pred EECC------C----------------------------------CceEEEeecCCCCeEEEEeccCccCCCcEEEEEeC
Q psy9598 545 WNLQ------T----------------------------------LAPISVLVGHQGIITGVNFCPLEVNGFNYLASTST 584 (1915)
Q Consensus 545 WDl~------t----------------------------------g~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~ 584 (1915)
|... . ..++..|.+|.+.|.+..|.. +++.+++++.
T Consensus 217 W~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~----gg~Q~vTaSW 292 (481)
T KOG0300|consen 217 WKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLA----GGQQMVTASW 292 (481)
T ss_pred HHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhc----Ccceeeeeec
Confidence 9621 0 123567889999999999987 5699999999
Q ss_pred CCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCC
Q psy9598 585 DGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSD 664 (1915)
Q Consensus 585 DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~ 664 (1915)
|.+..+||+.++..+..+ .+|....+.++-+|..+++++.+.|.+.++||++ .....+..+.||..
T Consensus 293 DRTAnlwDVEtge~v~~L------------tGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFR--eaI~sV~VFQGHtd 358 (481)
T KOG0300|consen 293 DRTANLWDVETGEVVNIL------------TGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFR--EAIQSVAVFQGHTD 358 (481)
T ss_pred cccceeeeeccCceeccc------------cCcchhccccccCCcceEEEEeccCceeEeccch--hhcceeeeeccccc
Confidence 999999999998754443 3566778888999999999999999999999996 55567788999999
Q ss_pred CeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCC
Q psy9598 665 KVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNF 744 (1915)
Q Consensus 665 ~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg 744 (1915)
.|+++.|.-+ ..+++|+.|.+|+|||+++..... ........++.++.+..+..|+.-.. +.
T Consensus 359 tVTS~vF~~d-d~vVSgSDDrTvKvWdLrNMRspl----------------ATIRtdS~~NRvavs~g~~iIAiPhD-NR 420 (481)
T KOG0300|consen 359 TVTSVVFNTD-DRVVSGSDDRTVKVWDLRNMRSPL----------------ATIRTDSPANRVAVSKGHPIIAIPHD-NR 420 (481)
T ss_pred ceeEEEEecC-CceeecCCCceEEEeeeccccCcc----------------eeeecCCccceeEeecCCceEEeccC-Cc
Confidence 9999999865 469999999999999998765211 11124567788999888888888776 88
Q ss_pred eEEEEECCCCceEEE-----eeCCCCCeEEEEEccCC-CCEEEEEecCceEEEEECCCC
Q psy9598 745 QIKIWDAFNGDLVQV-----LKGHTNEVFVLESHPFD-SRVLLSAGHDGLIIIWDILSS 797 (1915)
Q Consensus 745 ~I~vwD~~tg~~i~~-----l~gH~~~V~sl~~sp~d-g~~LaSgs~DG~I~IWdl~s~ 797 (1915)
.|++||+.. ..+.. -+||..-|+|++|.... -.-|++||.|..+.-|.+...
T Consensus 421 qvRlfDlnG-~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 421 QVRLFDLNG-NRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred eEEEEecCC-CccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 999999964 33333 35899999999997411 235889999999999998754
|
|
| >KOG0274|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=6e-25 Score=278.15 Aligned_cols=279 Identities=21% Similarity=0.329 Sum_probs=235.3
Q ss_pred cccCccccccCCCeEEEecccCCceeeeEEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCE
Q psy9598 442 VLRSREYSGPLSRSLMISSHKYSNLRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEI 521 (1915)
Q Consensus 442 ~l~~r~~tg~~d~~~~i~~~~~~~~~~~~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I 521 (1915)
+..+..++|+.++.+.+|+.. ....+...|.||.+.|++++|..-+.+|++|+.|.+++|||+.+|.+..++.||.+.|
T Consensus 216 ~~~~~~~~~s~~~tl~~~~~~-~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv 294 (537)
T KOG0274|consen 216 LHDGFFKSGSDDSTLHLWDLN-NGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSV 294 (537)
T ss_pred eecCeEEecCCCceeEEeecc-cceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceE
Confidence 345677889999999888643 3344444599999999999999888999999999999999999999999999999999
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccc
Q psy9598 522 SDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISK 601 (1915)
Q Consensus 522 ~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~ 601 (1915)
.+|...+ .++++||.|.+|+||++.++.++.++.+|.++|.++.+.- .++++|+.||+|++||+.+++++..
T Consensus 295 ~~~~~~~--~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~~------~~lvsgs~d~~v~VW~~~~~~cl~s 366 (537)
T KOG0274|consen 295 RCLTIDP--FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLDE------PLLVSGSYDGTVKVWDPRTGKCLKS 366 (537)
T ss_pred EEEEccC--ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEecC------CEEEEEecCceEEEEEhhhceeeee
Confidence 9998754 4789999999999999999999999999999999999973 8999999999999999997765444
Q ss_pred eeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEE
Q psy9598 602 TVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSG 681 (1915)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sg 681 (1915)
+ .+|...|+++.+... ..+++|+.|++|++||+.+.. .++..+.+|..-|.++.+ .+++|+++
T Consensus 367 l------------~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~--~c~~tl~~h~~~v~~l~~--~~~~Lvs~ 429 (537)
T KOG0274|consen 367 L------------SGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKR--KCIHTLQGHTSLVSSLLL--RDNFLVSS 429 (537)
T ss_pred e------------cCCcceEEEEEecCc-ceEEeeeeccceEeecCCchh--hhhhhhcCCccccccccc--ccceeEec
Confidence 3 457899999988765 799999999999999994332 788889999999977765 56799999
Q ss_pred eCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEee
Q psy9598 682 SRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLK 761 (1915)
Q Consensus 682 s~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~ 761 (1915)
+.||+|++||...++++..... .+...|.++++. ...+++++. +|.+++||+.++.++..+-
T Consensus 430 ~aD~~Ik~WD~~~~~~~~~~~~---------------~~~~~v~~l~~~--~~~il~s~~-~~~~~l~dl~~~~~~~~l~ 491 (537)
T KOG0274|consen 430 SADGTIKLWDAEEGECLRTLEG---------------RHVGGVSALALG--KEEILCSSD-DGSVKLWDLRSGTLIRTLL 491 (537)
T ss_pred cccccEEEeecccCceeeeecc---------------CCcccEEEeecC--cceEEEEec-CCeeEEEecccCchhhhhh
Confidence 9999999999999987654311 145667777766 566777777 9999999999999988775
Q ss_pred CCC
Q psy9598 762 GHT 764 (1915)
Q Consensus 762 gH~ 764 (1915)
.+.
T Consensus 492 ~~~ 494 (537)
T KOG0274|consen 492 STD 494 (537)
T ss_pred hcc
Confidence 444
|
|
| >KOG0275|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=5e-26 Score=249.47 Aligned_cols=285 Identities=20% Similarity=0.259 Sum_probs=238.3
Q ss_pred CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEe--------ecCCCCeEEEEeccCccCCCcEEEEEeCCCe
Q psy9598 516 GCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVL--------VGHQGIITGVNFCPLEVNGFNYLASTSTDGC 587 (1915)
Q Consensus 516 gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l--------~~h~~~V~sl~fsp~~~~d~~~L~sgs~Dgt 587 (1915)
|..+.+-|..|+|||++|++||.||.|-||+..+|+....+ .-+...|.|+.|+.+ ...|++|+.||.
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRD----sEMlAsGsqDGk 286 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRD----SEMLASGSQDGK 286 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeeccc----HHHhhccCcCCc
Confidence 45567889999999999999999999999999998865433 347789999999984 489999999999
Q ss_pred EEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCee
Q psy9598 588 IGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVD 667 (1915)
Q Consensus 588 I~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~ 667 (1915)
|++|.+.+|.++..+. ++|...|+|+.|+.|+..|++++.|.+|+|.-+ ..+.++..+.||++.|+
T Consensus 287 IKvWri~tG~ClRrFd-----------rAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGl---KSGK~LKEfrGHsSyvn 352 (508)
T KOG0275|consen 287 IKVWRIETGQCLRRFD-----------RAHTKGVTCLSFSRDNSQILSASFDQTVRIHGL---KSGKCLKEFRGHSSYVN 352 (508)
T ss_pred EEEEEEecchHHHHhh-----------hhhccCeeEEEEccCcchhhcccccceEEEecc---ccchhHHHhcCcccccc
Confidence 9999999998866543 246788999999999999999999999999987 56677888999999999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCC-EEEEEEecCCeE
Q psy9598 668 SIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDR-WVITAINFNFQI 746 (1915)
Q Consensus 668 sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~-~L~t~s~~Dg~I 746 (1915)
...|+++|.++++++.||+|+||+..+..|...+. ..+....|+++..-|.+. .++++.. .++|
T Consensus 353 ~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk--------------~~~~d~~vnsv~~~PKnpeh~iVCNr-sntv 417 (508)
T KOG0275|consen 353 EATFTDDGHHIISASSDGTVKVWHGKTTECLSTFK--------------PLGTDYPVNSVILLPKNPEHFIVCNR-SNTV 417 (508)
T ss_pred ceEEcCCCCeEEEecCCccEEEecCcchhhhhhcc--------------CCCCcccceeEEEcCCCCceEEEEcC-CCeE
Confidence 99999999999999999999999999888654321 112456677777777654 4444444 8899
Q ss_pred EEEECCCCceEEEeeC---CCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEc
Q psy9598 747 KIWDAFNGDLVQVLKG---HTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWS 823 (1915)
Q Consensus 747 ~vwD~~tg~~i~~l~g---H~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafS 823 (1915)
+|.++ .|+.+.++.. ..+...+.+.+| .|.++.+.|.|+.++.|.+.+|.. ...+. .|...|..++.+
T Consensus 418 ~imn~-qGQvVrsfsSGkREgGdFi~~~lSp-kGewiYcigED~vlYCF~~~sG~L--E~tl~-----VhEkdvIGl~HH 488 (508)
T KOG0275|consen 418 YIMNM-QGQVVRSFSSGKREGGDFINAILSP-KGEWIYCIGEDGVLYCFSVLSGKL--ERTLP-----VHEKDVIGLTHH 488 (508)
T ss_pred EEEec-cceEEeeeccCCccCCceEEEEecC-CCcEEEEEccCcEEEEEEeecCce--eeeee-----cccccccccccC
Confidence 99998 5888888863 234566677899 999999999999999999999988 55554 455678889999
Q ss_pred CCCCEEEEEeCCCeEEEEe
Q psy9598 824 PDGTTCALTDSYGHLLVYG 842 (1915)
Q Consensus 824 pdg~~Lasg~~dG~I~Iwd 842 (1915)
|..++||+-+.||.+.+|.
T Consensus 489 PHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 489 PHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred cccchhhhhcccchhhhcC
Confidence 9999999999999999994
|
|
| >KOG0305|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.4e-25 Score=267.70 Aligned_cols=278 Identities=20% Similarity=0.339 Sum_probs=238.8
Q ss_pred EEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeec-CC
Q psy9598 482 VLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVG-HQ 560 (1915)
Q Consensus 482 vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~-h~ 560 (1915)
+.|+ ..+.||+|.. ..|.+|+..++........+...|+++.|+++|.+||+|..+|.|.|||..+.+.+..+.+ |.
T Consensus 183 ldWs-s~n~laValg-~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~ 260 (484)
T KOG0305|consen 183 LDWS-SANVLAVALG-QSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHA 260 (484)
T ss_pred hhcc-cCCeEEEEec-ceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcC
Confidence 5566 3556777754 4899999999987777666689999999999999999999999999999999999999998 99
Q ss_pred CCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCC
Q psy9598 561 GIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDH 640 (1915)
Q Consensus 561 ~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg 640 (1915)
..|.+++|.. ..+.+|+.||.|.++|++....... .+.+|...|+.+.|++++.+||+|+.|+
T Consensus 261 ~rvg~laW~~------~~lssGsr~~~I~~~dvR~~~~~~~-----------~~~~H~qeVCgLkws~d~~~lASGgnDN 323 (484)
T KOG0305|consen 261 SRVGSLAWNS------SVLSSGSRDGKILNHDVRISQHVVS-----------TLQGHRQEVCGLKWSPDGNQLASGGNDN 323 (484)
T ss_pred ceeEEEeccC------ceEEEecCCCcEEEEEEecchhhhh-----------hhhcccceeeeeEECCCCCeeccCCCcc
Confidence 9999999985 7899999999999999987754322 2457889999999999999999999999
Q ss_pred eEEEEEecCCCCCceeEEeccCCCCeeEEEEcCC-CCEEEEEe--CCCcEEEEEccCCceEEeeecccccCCCCcccccc
Q psy9598 641 HVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHS-HLRFVSGS--RDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDE 717 (1915)
Q Consensus 641 ~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspd-g~~L~sgs--~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~ 717 (1915)
.+.|||. ........+..|...|.+++|+|- ..+||+|+ .|++|++||..++..+. .
T Consensus 324 ~~~Iwd~---~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~-----------------~ 383 (484)
T KOG0305|consen 324 VVFIWDG---LSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARID-----------------S 383 (484)
T ss_pred ceEeccC---CCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEec-----------------c
Confidence 9999998 445567778899999999999995 45778764 79999999999887443 1
Q ss_pred ccccccEEEEEECCCCCEEEEEE-ecCCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCC
Q psy9598 718 TNKKIKVTMVAWDASDRWVITAI-NFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILS 796 (1915)
Q Consensus 718 ~~~~~~V~~va~spdg~~L~t~s-~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s 796 (1915)
......|++|.|++..+-|+++. ..++.|.||+..+...+..+.||...|..++++| ++..+++|+.|.++++|++-.
T Consensus 384 vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SP-dg~~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 384 VDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSP-DGETIVTGAADETLRFWNLFD 462 (484)
T ss_pred cccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECC-CCCEEEEecccCcEEeccccC
Confidence 23567899999999986666543 3477899999999999999999999999999999 999999999999999999977
Q ss_pred Ccc
Q psy9598 797 SKQ 799 (1915)
Q Consensus 797 ~~~ 799 (1915)
...
T Consensus 463 ~~~ 465 (484)
T KOG0305|consen 463 ERP 465 (484)
T ss_pred CCC
Confidence 433
|
|
| >KOG0640|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-25 Score=244.87 Aligned_cols=295 Identities=16% Similarity=0.243 Sum_probs=235.1
Q ss_pred EEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCC-----------------C-ceEEEeecCCCCeEEEEeccCcc
Q psy9598 512 ATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQT-----------------L-APISVLVGHQGIITGVNFCPLEV 573 (1915)
Q Consensus 512 ~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~t-----------------g-~~~~~l~~h~~~V~sl~fsp~~~ 573 (1915)
..+..|.+++.+.+|++||.++|+||.|..|+|.|+.. + -.+.+|..|...|+++.|+|..
T Consensus 106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre- 184 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRE- 184 (430)
T ss_pred EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchh-
Confidence 45677999999999999999999999999999999861 1 2467889999999999999955
Q ss_pred CCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCC
Q psy9598 574 NGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSP 653 (1915)
Q Consensus 574 ~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~ 653 (1915)
..|++|+.|++|++||+........+.. ......|.|++|+|.|.+|++|....++++||+.+....
T Consensus 185 ---~ILiS~srD~tvKlFDfsK~saKrA~K~----------~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcf 251 (430)
T KOG0640|consen 185 ---TILISGSRDNTVKLFDFSKTSAKRAFKV----------FQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCF 251 (430)
T ss_pred ---heEEeccCCCeEEEEecccHHHHHHHHH----------hhccceeeeEeecCCCceEEEecCCCceeEEeccceeEe
Confidence 8999999999999999875432111111 122367999999999999999999999999999543222
Q ss_pred ceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCC
Q psy9598 654 LGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASD 733 (1915)
Q Consensus 654 ~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg 733 (1915)
.....-.+|++.|++|.+++.|++.++||.||.|+|||--++.|+.... .......|++..|..+|
T Consensus 252 vsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~--------------~AH~gsevcSa~Ftkn~ 317 (430)
T KOG0640|consen 252 VSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIG--------------NAHGGSEVCSAVFTKNG 317 (430)
T ss_pred eecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHH--------------hhcCCceeeeEEEccCC
Confidence 2222346799999999999999999999999999999987776554221 11245679999999999
Q ss_pred CEEEEEEecCCeEEEEECCCCceEEEeeCCC--C---CeEEEEEccCCCCEEEEEe-cCceEEEEECCCCccccceeeee
Q psy9598 734 RWVITAINFNFQIKIWDAFNGDLVQVLKGHT--N---EVFVLESHPFDSRVLLSAG-HDGLIIIWDILSSKQRGYKWFHN 807 (1915)
Q Consensus 734 ~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~--~---~V~sl~~sp~dg~~LaSgs-~DG~I~IWdl~s~~~~~~~~~~~ 807 (1915)
+||++++. |..+++|.+.++.++..+.|-. + .-+...|+. ...+++.-. ..+.++-||.+++.. +..
T Consensus 318 kyiLsSG~-DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNh-tEdyVl~pDEas~slcsWdaRtadr--~~l--- 390 (430)
T KOG0640|consen 318 KYILSSGK-DSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNH-TEDYVLFPDEASNSLCSWDARTADR--VAL--- 390 (430)
T ss_pred eEEeecCC-cceeeeeeecCCceEEEEecCCcccchhhhhhhhhcC-ccceEEccccccCceeeccccchhh--hhh---
Confidence 99999998 9999999999999999988642 1 123344665 555655544 467899999998876 322
Q ss_pred eecCCCCcceEEEEEcCCCCEEEEEeCCCeEEEEe
Q psy9598 808 IVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYG 842 (1915)
Q Consensus 808 ~~~~~~~~~V~~vafSpdg~~Lasg~~dG~I~Iwd 842 (1915)
+...|++++..+.-||.+.-|++|+.|-.+++|-
T Consensus 391 -~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWy 424 (430)
T KOG0640|consen 391 -LSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWY 424 (430)
T ss_pred -cccCCCCCceEEEeCCCCCceeeecccceeeeee
Confidence 2346889999999999999999999999999994
|
|
| >KOG0308|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.5e-26 Score=270.07 Aligned_cols=354 Identities=18% Similarity=0.217 Sum_probs=269.6
Q ss_pred CCCCcEE---EEEEc-CCCCEEEEEECCCcEEEEECCCCc------EEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEE
Q psy9598 474 GHLSAVF---CVLFD-KLGEVIVTGADDLLIKLWRARDGK------LLATLRGCSGEISDIAIDNRNILLAAGTVDKTIR 543 (1915)
Q Consensus 474 gH~~~V~---~vafs-pdg~~LaTGs~Dg~I~IWd~~tg~------~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIr 543 (1915)
.|...|. ++..+ |.++||+|||.||.|++|++.... .+.++..|...|++|+...+++.|+|+|.|.+|+
T Consensus 19 qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK 98 (735)
T KOG0308|consen 19 QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVK 98 (735)
T ss_pred hccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEE
Confidence 4555555 44444 577889999999999999975432 4778899999999999999999999999999999
Q ss_pred EEECCCC--ceEEEeecCCCCeEEEEe-ccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCc
Q psy9598 544 IWNLQTL--APISVLVGHQGIITGVNF-CPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAH 620 (1915)
Q Consensus 544 VWDl~tg--~~~~~l~~h~~~V~sl~f-sp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (1915)
+|+...+ -++.++..|.+.|.||++ .+ +..++|+||-|+.|.+||+.++.......+. .........++...
T Consensus 99 ~W~~~~~~~~c~stir~H~DYVkcla~~ak----~~~lvaSgGLD~~IflWDin~~~~~l~~s~n-~~t~~sl~sG~k~s 173 (735)
T KOG0308|consen 99 VWNAHKDNTFCMSTIRTHKDYVKCLAYIAK----NNELVASGGLDRKIFLWDINTGTATLVASFN-NVTVNSLGSGPKDS 173 (735)
T ss_pred EeecccCcchhHhhhhcccchheeeeeccc----CceeEEecCCCccEEEEEccCcchhhhhhcc-ccccccCCCCCccc
Confidence 9999877 678889999999999999 44 4589999999999999999988431111111 11111112267789
Q ss_pred eEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEe
Q psy9598 621 ILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFI 700 (1915)
Q Consensus 621 V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~ 700 (1915)
|++++.++.|..|++|+..+.|++||. .....+..+.||+..|.+|..+.+|..++++|.||+|++||+....|+..
T Consensus 174 iYSLA~N~t~t~ivsGgtek~lr~wDp---rt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T 250 (735)
T KOG0308|consen 174 IYSLAMNQTGTIIVSGGTEKDLRLWDP---RTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLAT 250 (735)
T ss_pred eeeeecCCcceEEEecCcccceEEecc---ccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeee
Confidence 999999999999999999999999998 45566778889999999999999999999999999999999998876653
Q ss_pred eecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEE
Q psy9598 701 RLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVL 780 (1915)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~L 780 (1915)
. ..|...|+++..+++-..+++|+. ||.|..-|+++......+.....+|..+..+- ..+-+
T Consensus 251 ~----------------~vH~e~VWaL~~~~sf~~vYsG~r-d~~i~~Tdl~n~~~~tlick~daPv~~l~~~~-~~~~~ 312 (735)
T KOG0308|consen 251 Y----------------IVHKEGVWALQSSPSFTHVYSGGR-DGNIYRTDLRNPAKSTLICKEDAPVLKLHLHE-HDNSV 312 (735)
T ss_pred E----------------EeccCceEEEeeCCCcceEEecCC-CCcEEecccCCchhheEeecCCCchhhhhhcc-ccCCc
Confidence 2 236677999999999999999999 99999999998544444444555677777665 22334
Q ss_pred EEEecCceEEEEECCCCccc---c--ce--------eee----eeecCCCCcceEEEEEcCCCCEEEEEeCCCeEEEEeC
Q psy9598 781 LSAGHDGLIIIWDILSSKQR---G--YK--------WFH----NIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGL 843 (1915)
Q Consensus 781 aSgs~DG~I~IWdl~s~~~~---~--~~--------~~~----~~~~~~~~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl 843 (1915)
-+++.|+.|.-|...-.... + .. .+. ......+..+|...+.-.|-+++++-+..|.+.+||+
T Consensus 313 WvtTtds~I~rW~~~~~~~l~~s~~~~~~~T~~~~~~~~~~~tp~~vi~Gg~ai~k~~mL~dkRhVlTkDa~gnv~lwDI 392 (735)
T KOG0308|consen 313 WVTTTDSSIKRWKLEPDIALSVSGDLDFFSTDSNNHSCDLTNTPDSVIPGGAAIKKHAMLNDKRHVLTKDAKGNVALWDI 392 (735)
T ss_pred eeeeccccceecCCccccccccCCCCCcccccCCCccccccCCCceeccCchhhhhhhhhcCcceEeeecCCCCEEEEEe
Confidence 67788999999976421110 0 00 000 0001122234555566668899999999999999999
Q ss_pred CCCcccccCC
Q psy9598 844 GGFKRPQNIP 853 (1915)
Q Consensus 844 ~s~~~~~~l~ 853 (1915)
-....+..+-
T Consensus 393 l~~~~~~d~g 402 (735)
T KOG0308|consen 393 LACVKVEDFG 402 (735)
T ss_pred eeeeehhhcc
Confidence 8766655443
|
|
| >KOG0772|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.1e-25 Score=258.86 Aligned_cols=310 Identities=15% Similarity=0.225 Sum_probs=236.4
Q ss_pred CcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCc----eEEEee-cCCCCeEEEEeccCccCCCcEEEEE
Q psy9598 508 GKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLA----PISVLV-GHQGIITGVNFCPLEVNGFNYLAST 582 (1915)
Q Consensus 508 g~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~----~~~~l~-~h~~~V~sl~fsp~~~~d~~~L~sg 582 (1915)
+.+-..|.+|+..|++|++.|.|..|+|||.|.+|++||++... ....|. .....|.++.|++.+ ..|++.
T Consensus 157 ~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg----~~iLvv 232 (641)
T KOG0772|consen 157 GSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTG----DQILVV 232 (641)
T ss_pred ccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCC----CeEEEE
Confidence 44556788999999999999999999999999999999997532 122222 344578999999954 778888
Q ss_pred eCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCC-cEEEEEeCCCeEEEEEecCCCCCceeEEe--
Q psy9598 583 STDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGG-LFLATGSGDHHVRVYKMDGVDSPLGILEV-- 659 (1915)
Q Consensus 583 s~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg-~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l-- 659 (1915)
+....++|+|-..............+.-.....+|...++|.+|+|.. ..+++++.||+++||++........+...
T Consensus 233 sg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~ 312 (641)
T KOG0772|consen 233 SGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKP 312 (641)
T ss_pred ecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeecc
Confidence 888899999987665544444444444455667899999999999964 47889999999999999765544444432
Q ss_pred -ccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEE
Q psy9598 660 -EEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVIT 738 (1915)
Q Consensus 660 -~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t 738 (1915)
.+..-.+++++|+++|.+|++|+.||.|.+|+......... ............|+||+||++|++|++
T Consensus 313 ~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~-----------~~vk~AH~~g~~Itsi~FS~dg~~LlS 381 (641)
T KOG0772|consen 313 AGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPV-----------MKVKDAHLPGQDITSISFSYDGNYLLS 381 (641)
T ss_pred CCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccc-----------eEeeeccCCCCceeEEEeccccchhhh
Confidence 23345789999999999999999999999999854321110 011111223348999999999999999
Q ss_pred EEecCCeEEEEECCCC-ceEEEeeCCC--CCeEEEEEccCCCCEEEEEec------CceEEEEECCCCccccceeeeeee
Q psy9598 739 AINFNFQIKIWDAFNG-DLVQVLKGHT--NEVFVLESHPFDSRVLLSAGH------DGLIIIWDILSSKQRGYKWFHNIV 809 (1915)
Q Consensus 739 ~s~~Dg~I~vwD~~tg-~~i~~l~gH~--~~V~sl~~sp~dg~~LaSgs~------DG~I~IWdl~s~~~~~~~~~~~~~ 809 (1915)
-+. |++++|||++.. +++.+..+-. -+-+.++|+| +..+|+||.. .|++++||..+... +..+.
T Consensus 382 Rg~-D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSP-d~kli~TGtS~~~~~~~g~L~f~d~~t~d~--v~ki~--- 454 (641)
T KOG0772|consen 382 RGF-DDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSP-DDKLILTGTSAPNGMTAGTLFFFDRMTLDT--VYKID--- 454 (641)
T ss_pred ccC-CCceeeeeccccccchhhhcCCCccCCCCccccCC-CceEEEecccccCCCCCceEEEEeccceee--EEEec---
Confidence 998 999999999874 5566655433 2457889999 8999999863 57899999887665 44433
Q ss_pred cCCCCcceEEEEEcCCCCEEEEEeCCCeEEEE
Q psy9598 810 EGQGEGALFDGKWSPDGTTCALTDSYGHLLVY 841 (1915)
Q Consensus 810 ~~~~~~~V~~vafSpdg~~Lasg~~dG~I~Iw 841 (1915)
.....|..|.|+|--+.|.+|+.||.++||
T Consensus 455 --i~~aSvv~~~WhpkLNQi~~gsgdG~~~vy 484 (641)
T KOG0772|consen 455 --ISTASVVRCLWHPKLNQIFAGSGDGTAHVY 484 (641)
T ss_pred --CCCceEEEEeecchhhheeeecCCCceEEE
Confidence 235679999999999999999999999887
|
|
| >KOG0299|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.8e-25 Score=253.05 Aligned_cols=295 Identities=21% Similarity=0.319 Sum_probs=240.3
Q ss_pred EEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEE----EE---E-----------eCCCCCEEEEEEeCCCC
Q psy9598 470 YVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLL----AT---L-----------RGCSGEISDIAIDNRNI 531 (1915)
Q Consensus 470 ~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~----~~---l-----------~gH~~~I~~Lafspdg~ 531 (1915)
+.+..|.-+|+||+++|++.++++++.+|+|.-|++.+|+.. .+ + .+|...|.+++.++||+
T Consensus 136 ~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk 215 (479)
T KOG0299|consen 136 RVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK 215 (479)
T ss_pred eeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc
Confidence 456789999999999999999999999999999999888633 11 0 27889999999999999
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccc
Q psy9598 532 LLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFN 611 (1915)
Q Consensus 532 ~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~ 611 (1915)
+||+|+.|..|.||+..+++.+.++.+|.+.|.+++|-- +...|+++|.|.+|++|++.... +.
T Consensus 216 ylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~----gt~~lys~s~Drsvkvw~~~~~s------------~v 279 (479)
T KOG0299|consen 216 YLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRK----GTSELYSASADRSVKVWSIDQLS------------YV 279 (479)
T ss_pred EEEecCCCceEEEecCcccchhhcccccccceeeeeeec----CccceeeeecCCceEEEehhHhH------------HH
Confidence 999999999999999999999999999999999999986 44899999999999999987553 34
Q ss_pred cccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEE
Q psy9598 612 ERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWY 691 (1915)
Q Consensus 612 ~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWD 691 (1915)
..+.+|...|..+....-++.+-+|+.|+++++|++.. .....+.+|.+.+.|++|- +..+|++||.+|.|.+|+
T Consensus 280 etlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~e----esqlifrg~~~sidcv~~I-n~~HfvsGSdnG~IaLWs 354 (479)
T KOG0299|consen 280 ETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPE----ESQLIFRGGEGSIDCVAFI-NDEHFVSGSDNGSIALWS 354 (479)
T ss_pred HHHhCCccceeeechhcccceEEeccccceeEEEeccc----cceeeeeCCCCCeeeEEEe-cccceeeccCCceEEEee
Confidence 55667889999999998899999999999999999932 1233467889999999997 456899999999999999
Q ss_pred ccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCC----ceEEEeeCCCCCe
Q psy9598 692 YKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNG----DLVQVLKGHTNEV 767 (1915)
Q Consensus 692 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg----~~i~~l~gH~~~V 767 (1915)
+.....+.+........+.. ....+..+|++|+..|...++++|+. +|.|++|-+..+ .++..+. -.+.|
T Consensus 355 ~~KKkplf~~~~AHgv~~~~----~~~~~~~Witsla~i~~sdL~asGS~-~G~vrLW~i~~g~r~i~~l~~ls-~~GfV 428 (479)
T KOG0299|consen 355 LLKKKPLFTSRLAHGVIPEL----DPVNGNFWITSLAVIPGSDLLASGSW-SGCVRLWKIEDGLRAINLLYSLS-LVGFV 428 (479)
T ss_pred ecccCceeEeeccccccCCc----cccccccceeeeEecccCceEEecCC-CCceEEEEecCCccccceeeecc-cccEE
Confidence 98887665543332222221 12234469999999999999999988 999999998876 4555554 56789
Q ss_pred EEEEEccCCCCEEEE-EecCceEEEE
Q psy9598 768 FVLESHPFDSRVLLS-AGHDGLIIIW 792 (1915)
Q Consensus 768 ~sl~~sp~dg~~LaS-gs~DG~I~IW 792 (1915)
++|+|++ +|..|++ .|....+--|
T Consensus 429 Nsl~f~~-sgk~ivagiGkEhRlGRW 453 (479)
T KOG0299|consen 429 NSLAFSN-SGKRIVAGIGKEHRLGRW 453 (479)
T ss_pred EEEEEcc-CCCEEEEeccccccccee
Confidence 9999999 7775554 4555554444
|
|
| >cd05496 Bromo_WDR9_II Bromodomain; WDR9 repeat II_like subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-26 Score=234.42 Aligned_cols=111 Identities=50% Similarity=1.015 Sum_probs=105.9
Q ss_pred chhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCccccCCCcCCHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhhcC
Q psy9598 115 PFNWKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQ 194 (1915)
Q Consensus 115 ~~~~~~~~~~il~~l~~~~~~~~F~~pvd~~~~pdY~~iIk~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~Lif~N~~~yN~ 194 (1915)
...|++.|..||+.|++++.++||++|||...+||||+||++||||+||++||.+|.|.++++|.+||+|||.||++||+
T Consensus 3 ~~~w~~~c~~il~~l~~~~~s~~F~~PVd~~~~pdY~~iIk~PmDL~tIk~kL~~~~Y~~~~ef~~D~~lif~Na~~yN~ 82 (119)
T cd05496 3 ESDWKKQCKELVNLMWDCEDSEPFRQPVDLLKYPDYRDIIDTPMDLGTVKETLFGGNYDDPMEFAKDVRLIFSNSKSYTP 82 (119)
T ss_pred HHHHHHHHHHHHHHHHhCCccccccCCCChhhcCcHHHHhCCcccHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 35799999999999999999999999999989999999999999999999999999999999999999999999999998
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy9598 195 NKRSKIYIMTTRLSEFAEEHLRRLTVRWNSH 225 (1915)
Q Consensus 195 ~~~s~i~~~a~~l~~~f~~~~~~~~~~~~~~ 225 (1915)
+++|.||.+|..|+++|+++++.+...|+..
T Consensus 83 ~~~s~i~~~a~~L~~~F~~~~~~l~~~~~~~ 113 (119)
T cd05496 83 NKRSRIYSMTLRLSALFEEHIKKIISDWKSA 113 (119)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6459999999999999999999999998743
|
WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >KOG0268|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.6e-26 Score=256.04 Aligned_cols=292 Identities=16% Similarity=0.255 Sum_probs=232.6
Q ss_pred EEEEEeCCCCCEEEEEEeCCC-CEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeE
Q psy9598 510 LLATLRGCSGEISDIAIDNRN-ILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCI 588 (1915)
Q Consensus 510 ~~~~l~gH~~~I~~Lafspdg-~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI 588 (1915)
.+..|.||...|.||+=+|.. ..+|||+.||.|+|||+.+-.++.++.+|.+.|.+|++.. ..++++++|.+|
T Consensus 58 Fv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~------~~~~tvgdDKtv 131 (433)
T KOG0268|consen 58 FVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ------TSFFTVGDDKTV 131 (433)
T ss_pred chhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc------cceEEecCCcce
Confidence 345678999999999999986 7899999999999999999999999999999999999976 678999999999
Q ss_pred EEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeE
Q psy9598 589 GFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDS 668 (1915)
Q Consensus 589 ~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~s 668 (1915)
+.|-+... .+.++ .+.+.+..+.-+..+..++|||. .|.|||.. ....+..+.-....|.+
T Consensus 132 K~wk~~~~-p~~ti-------------lg~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~---R~~Pv~smswG~Dti~s 192 (433)
T KOG0268|consen 132 KQWKIDGP-PLHTI-------------LGKSVYLGIDHHRKNSVFATCGE--QIDIWDEQ---RDNPVSSMSWGADSISS 192 (433)
T ss_pred eeeeccCC-cceee-------------eccccccccccccccccccccCc--eeeecccc---cCCccceeecCCCceeE
Confidence 99987763 11111 12355667777777778888876 58999983 23345556667788999
Q ss_pred EEEcCCCC-EEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEE
Q psy9598 669 IQWSHSHL-RFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIK 747 (1915)
Q Consensus 669 l~fspdg~-~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~ 747 (1915)
+.|+|... .|++|+.|+.|.|||+++...+... .....-+.|+|+|.+ +.+++++.|..++
T Consensus 193 vkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KV-----------------i~~mRTN~IswnPea-fnF~~a~ED~nlY 254 (433)
T KOG0268|consen 193 VKFNPVETSILASCASDRSIVLYDLRQASPLKKV-----------------ILTMRTNTICWNPEA-FNFVAANEDHNLY 254 (433)
T ss_pred EecCCCcchheeeeccCCceEEEecccCCcccee-----------------eeeccccceecCccc-cceeeccccccce
Confidence 99999765 6677779999999999987743321 122344679999954 5455555599999
Q ss_pred EEECCC-CceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCC
Q psy9598 748 IWDAFN-GDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDG 826 (1915)
Q Consensus 748 vwD~~t-g~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg 826 (1915)
.||++. ..++.+..+|.+.|.+|.|+| .|.-|++||.|.+|+||.+..+.. ...++ ......|+++.||.|.
T Consensus 255 ~~DmR~l~~p~~v~~dhvsAV~dVdfsp-tG~EfvsgsyDksIRIf~~~~~~S--RdiYh----tkRMq~V~~Vk~S~Ds 327 (433)
T KOG0268|consen 255 TYDMRNLSRPLNVHKDHVSAVMDVDFSP-TGQEFVSGSYDKSIRIFPVNHGHS--RDIYH----TKRMQHVFCVKYSMDS 327 (433)
T ss_pred ehhhhhhcccchhhcccceeEEEeccCC-CcchhccccccceEEEeecCCCcc--hhhhh----HhhhheeeEEEEeccc
Confidence 999986 467888999999999999999 999999999999999999988776 22222 1234679999999999
Q ss_pred CEEEEEeCCCeEEEEeCCCCccccc
Q psy9598 827 TTCALTDSYGHLLVYGLGGFKRPQN 851 (1915)
Q Consensus 827 ~~Lasg~~dG~I~Iwdl~s~~~~~~ 851 (1915)
++|++|+.||.|++|--.-.+.+..
T Consensus 328 kyi~SGSdd~nvRlWka~Aseklgv 352 (433)
T KOG0268|consen 328 KYIISGSDDGNVRLWKAKASEKLGV 352 (433)
T ss_pred cEEEecCCCcceeeeecchhhhcCC
Confidence 9999999999999998766554443
|
|
| >KOG0277|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.7e-25 Score=236.39 Aligned_cols=282 Identities=19% Similarity=0.350 Sum_probs=226.9
Q ss_pred EEEEEcCC-CCEEEEEE-------CCCcEEEEECCCCcEEEEEe--CCCCCEEEEEEeCC-CCEEEEEeCCCcEEEEECC
Q psy9598 480 FCVLFDKL-GEVIVTGA-------DDLLIKLWRARDGKLLATLR--GCSGEISDIAIDNR-NILLAAGTVDKTIRIWNLQ 548 (1915)
Q Consensus 480 ~~vafspd-g~~LaTGs-------~Dg~I~IWd~~tg~~~~~l~--gH~~~I~~Lafspd-g~~LaSgs~DgtIrVWDl~ 548 (1915)
+++.|||- .++||++. ..|.+.|.++..+.-+..+. .-...+..++|++. .+.+++++.||+++|||+.
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~ 91 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLT 91 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccC
Confidence 57888882 23333332 36899999987555444332 24678999999986 4578888999999999974
Q ss_pred C-CceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEEC
Q psy9598 549 T-LAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFS 627 (1915)
Q Consensus 549 t-g~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs 627 (1915)
- ..+++.++.|...|.++.|++. ....++++|.||+|++|+...+..+.+ +.+|..-|+...|+
T Consensus 92 ~~s~Pi~~~kEH~~EV~Svdwn~~---~r~~~ltsSWD~TiKLW~~~r~~Sv~T------------f~gh~~~Iy~a~~s 156 (311)
T KOG0277|consen 92 MPSKPIHKFKEHKREVYSVDWNTV---RRRIFLTSSWDGTIKLWDPNRPNSVQT------------FNGHNSCIYQAAFS 156 (311)
T ss_pred CCCcchhHHHhhhhheEEeccccc---cceeEEeeccCCceEeecCCCCcceEe------------ecCCccEEEEEecC
Confidence 3 4688999999999999999985 467888889999999999887765444 34577889999999
Q ss_pred C-CCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcC-CCCEEEEEeCCCcEEEEEccCCceEEeeeccc
Q psy9598 628 P-GGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSH-SHLRFVSGSRDGTALIWYYKCSQWRFIRLDMN 705 (1915)
Q Consensus 628 p-dg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fsp-dg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~ 705 (1915)
| .++++++++.||++++||++... ....+..|...|.|+.|+. +...|+||+.|+.|++||++....
T Consensus 157 p~~~nlfas~Sgd~~l~lwdvr~~g---k~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~-------- 225 (311)
T KOG0277|consen 157 PHIPNLFASASGDGTLRLWDVRSPG---KFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRT-------- 225 (311)
T ss_pred CCCCCeEEEccCCceEEEEEecCCC---ceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccc--------
Confidence 9 47899999999999999996442 2333788999999999986 456889999999999999987551
Q ss_pred ccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCC-CceEEEeeCCCCCeEEEEEccCCCCEEEEEe
Q psy9598 706 TCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFN-GDLVQVLKGHTNEVFVLESHPFDSRVLLSAG 784 (1915)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~t-g~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs 784 (1915)
......+|...|..|.|||...-|+++++.|-+++|||... ..++.+...|+.-|..+.|++.++.++|++|
T Consensus 226 -------pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~g 298 (311)
T KOG0277|consen 226 -------PLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTG 298 (311)
T ss_pred -------cceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecc
Confidence 12345678999999999998877666666699999999874 4567777889999999999999999999999
Q ss_pred cCceEEEEEC
Q psy9598 785 HDGLIIIWDI 794 (1915)
Q Consensus 785 ~DG~I~IWdl 794 (1915)
.|+.++||+-
T Consensus 299 WDe~l~Vw~p 308 (311)
T KOG0277|consen 299 WDELLYVWNP 308 (311)
T ss_pred cccceeeecc
Confidence 9999999984
|
|
| >KOG0641|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.3e-23 Score=217.74 Aligned_cols=308 Identities=19% Similarity=0.249 Sum_probs=232.2
Q ss_pred CceeeeEEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECC------CCc---------EEEEEeCCCCCEEEEEEeC
Q psy9598 464 SNLRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRAR------DGK---------LLATLRGCSGEISDIAIDN 528 (1915)
Q Consensus 464 ~~~~~~~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~------tg~---------~~~~l~gH~~~I~~Lafsp 528 (1915)
.++..+.+| ..+..|.+|+|+|.|.+.|+|+...+.+|-... .+. +...-+.|.+.|.|.+|+|
T Consensus 21 ~~f~~i~~l-~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~ 99 (350)
T KOG0641|consen 21 KHFEAINIL-EDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSP 99 (350)
T ss_pred cceEEEEEe-cchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecC
Confidence 445555444 567899999999999999999999998886432 111 2223357899999999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceE-----EEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCcccccee
Q psy9598 529 RNILLAAGTVDKTIRIWNLQTLAPI-----SVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTV 603 (1915)
Q Consensus 529 dg~~LaSgs~DgtIrVWDl~tg~~~-----~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~ 603 (1915)
+|.+|++|+.|.+|++.-++...+. ..+.-|.+.|..++|.......
T Consensus 100 ~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~---------------------------- 151 (350)
T KOG0641|consen 100 CGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESG---------------------------- 151 (350)
T ss_pred ccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcC----------------------------
Confidence 9999999999999999876543221 2344566666666665432212
Q ss_pred ccCccccccccCCCCCceEEEEECCCCcEEEEEe-CCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEe
Q psy9598 604 FHEPVMFNERIRPGNAHILCSSFSPGGLFLATGS-GDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGS 682 (1915)
Q Consensus 604 ~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs-~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs 682 (1915)
|.+|++++ .|..|++-|. .....+..+.+|++.|.++ ++-+|-+|++|+
T Consensus 152 --------------------------~~il~s~gagdc~iy~tdc---~~g~~~~a~sghtghilal-yswn~~m~~sgs 201 (350)
T KOG0641|consen 152 --------------------------GAILASAGAGDCKIYITDC---GRGQGFHALSGHTGHILAL-YSWNGAMFASGS 201 (350)
T ss_pred --------------------------ceEEEecCCCcceEEEeec---CCCCcceeecCCcccEEEE-EEecCcEEEccC
Confidence 22333332 3445555554 3445566778899999887 455788999999
Q ss_pred CCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeC
Q psy9598 683 RDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKG 762 (1915)
Q Consensus 683 ~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~g 762 (1915)
.|.+|++||++-..++...-... ....-....|.+++..|.|++|++|-. |....+||++.+..++.+..
T Consensus 202 qdktirfwdlrv~~~v~~l~~~~---------~~~glessavaav~vdpsgrll~sg~~-dssc~lydirg~r~iq~f~p 271 (350)
T KOG0641|consen 202 QDKTIRFWDLRVNSCVNTLDNDF---------HDGGLESSAVAAVAVDPSGRLLASGHA-DSSCMLYDIRGGRMIQRFHP 271 (350)
T ss_pred CCceEEEEeeeccceeeeccCcc---------cCCCcccceeEEEEECCCcceeeeccC-CCceEEEEeeCCceeeeeCC
Confidence 99999999999877655321100 001113467999999999999999988 99999999999999999999
Q ss_pred CCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEEeCCCeEEEEe
Q psy9598 763 HTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYG 842 (1915)
Q Consensus 763 H~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~dG~I~Iwd 842 (1915)
|...|.++.|+| ...+|+||+.|..|++-|+...- ...+..++.+.|...+..+.|+|..-.|++.+.|.++.+|.
T Consensus 272 hsadir~vrfsp-~a~yllt~syd~~ikltdlqgdl---a~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa 347 (350)
T KOG0641|consen 272 HSADIRCVRFSP-GAHYLLTCSYDMKIKLTDLQGDL---AHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWA 347 (350)
T ss_pred CccceeEEEeCC-CceEEEEecccceEEEeecccch---hhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEec
Confidence 999999999999 88999999999999999996532 23344445567788888999999999999999999999998
Q ss_pred CC
Q psy9598 843 LG 844 (1915)
Q Consensus 843 l~ 844 (1915)
+.
T Consensus 348 ~~ 349 (350)
T KOG0641|consen 348 LN 349 (350)
T ss_pred cC
Confidence 74
|
|
| >KOG2106|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=3e-23 Score=240.58 Aligned_cols=377 Identities=17% Similarity=0.243 Sum_probs=281.1
Q ss_pred eEEecCCCCcEEEEEEcCCCCEEEEEECCC--------cEEEEECCCCcEEEEEeCCCCCEEEEEEeCC--CCEEEEE--
Q psy9598 469 HYVNLGHLSAVFCVLFDKLGEVIVTGADDL--------LIKLWRARDGKLLATLRGCSGEISDIAIDNR--NILLAAG-- 536 (1915)
Q Consensus 469 ~~~l~gH~~~V~~vafspdg~~LaTGs~Dg--------~I~IWd~~tg~~~~~l~gH~~~I~~Lafspd--g~~LaSg-- 536 (1915)
.+...||+..|-|++.+|+.-.+++|-.-| .|+|||..+...++.+......|+|++|++- |.+|+.-
T Consensus 97 Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~ 176 (626)
T KOG2106|consen 97 QRHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDD 176 (626)
T ss_pred cccccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccceeeeeeccccccceeeeecccCCCceEEEecC
Confidence 346779999999999999998999876555 4999999888888888888889999999873 5565554
Q ss_pred eCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCC
Q psy9598 537 TVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRP 616 (1915)
Q Consensus 537 s~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~ 616 (1915)
+.+..+.|||.+.+............|....|+|.. .++++++ ..|.+.+|+++++........- + ..
T Consensus 177 s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd---~nliit~-Gk~H~~Fw~~~~~~l~k~~~~f------e--k~ 244 (626)
T KOG2106|consen 177 SNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTD---PNLIITC-GKGHLYFWTLRGGSLVKRQGIF------E--KR 244 (626)
T ss_pred CCccccchhhchhhhccCcceeccceEEEEEeccCC---CcEEEEe-CCceEEEEEccCCceEEEeecc------c--cc
Confidence 456789999999888887777778889999999964 3555554 4688999999887543332211 0 01
Q ss_pred CCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCc
Q psy9598 617 GNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQ 696 (1915)
Q Consensus 617 ~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~ 696 (1915)
....|.|++|.++|. +++|.++|.|.||+..+ .........|.+.|.+++...+|. |++|+.|..|..||-.-..
T Consensus 245 ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~---~~~~k~~~aH~ggv~~L~~lr~Gt-llSGgKDRki~~Wd~~y~k 319 (626)
T KOG2106|consen 245 EKKFVLCVTFLENGD-VITGDSGGNILIWSKGT---NRISKQVHAHDGGVFSLCMLRDGT-LLSGGKDRKIILWDDNYRK 319 (626)
T ss_pred cceEEEEEEEcCCCC-EEeecCCceEEEEeCCC---ceEEeEeeecCCceEEEEEecCcc-EeecCccceEEeccccccc
Confidence 226799999999996 88999999999999833 233333449999999999999996 4559999999999832221
Q ss_pred eEEeeecc------------cc---------cCC---CCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECC
Q psy9598 697 WRFIRLDM------------NT---------CLP---HTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAF 752 (1915)
Q Consensus 697 ~~~~~~~~------------~~---------~~~---~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~ 752 (1915)
...+.+.. .. .+. .........+|....+.++.+|+...+++++. |+.+++|+
T Consensus 320 ~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gq-dk~v~lW~-- 396 (626)
T KOG2106|consen 320 LRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQ-DKHVRLWN-- 396 (626)
T ss_pred cccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccC-cceEEEcc--
Confidence 11110000 00 000 00111223456678889999999999999999 99999999
Q ss_pred CCceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEE
Q psy9598 753 NGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALT 832 (1915)
Q Consensus 753 tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg 832 (1915)
..+++.+.. -..++.++.|+| .+ .||.|...|...|.|..+... ..++ ....++.+++|+|+|.+||+|
T Consensus 397 ~~k~~wt~~-~~d~~~~~~fhp-sg-~va~Gt~~G~w~V~d~e~~~l---v~~~-----~d~~~ls~v~ysp~G~~lAvg 465 (626)
T KOG2106|consen 397 DHKLEWTKI-IEDPAECADFHP-SG-VVAVGTATGRWFVLDTETQDL---VTIH-----TDNEQLSVVRYSPDGAFLAVG 465 (626)
T ss_pred CCceeEEEE-ecCceeEeeccC-cc-eEEEeeccceEEEEeccccee---EEEE-----ecCCceEEEEEcCCCCEEEEe
Confidence 444444433 345788999999 66 999999999999999988544 2232 126789999999999999999
Q ss_pred eCCCeEEEEeCCCCccc--------ccCCCceeecCCCCeeeecCCCc-ccee
Q psy9598 833 DSYGHLLVYGLGGFKRP--------QNIPRELFFHTDYRTLNRPNGLF-EPTY 876 (1915)
Q Consensus 833 ~~dG~I~Iwdl~s~~~~--------~~l~~~~~F~~d~~~Lv~~~~~~-~~v~ 876 (1915)
+.|++|+||.++..... .....++-|+.|+..++..++.| +-.|
T Consensus 466 s~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW 518 (626)
T KOG2106|consen 466 SHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYW 518 (626)
T ss_pred cCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEE
Confidence 99999999999854332 22234788999999999888877 4445
|
|
| >KOG1446|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.2e-23 Score=231.35 Aligned_cols=294 Identities=17% Similarity=0.218 Sum_probs=236.9
Q ss_pred cEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeC--CC
Q psy9598 509 KLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTST--DG 586 (1915)
Q Consensus 509 ~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~--Dg 586 (1915)
+..+.|....+.|++|.|+.+|.+|++++.|.+|+|||..+|..+.++..+.-.|..++|.... ..++.++. |.
T Consensus 5 ~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~----~~~i~sStk~d~ 80 (311)
T KOG1446|consen 5 RPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHS----NTVIHSSTKEDD 80 (311)
T ss_pred ccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCC----ceEEEccCCCCC
Confidence 4445566667899999999999999999999999999999999999999888888899997643 56666665 88
Q ss_pred eEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCe
Q psy9598 587 CIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKV 666 (1915)
Q Consensus 587 tI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V 666 (1915)
+|+..++.+.+. ...+.+|...|++++.+|-+..+++++.|++|++||++... +...+ +...-
T Consensus 81 tIryLsl~dNky------------lRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~---cqg~l--~~~~~ 143 (311)
T KOG1446|consen 81 TIRYLSLHDNKY------------LRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKK---CQGLL--NLSGR 143 (311)
T ss_pred ceEEEEeecCce------------EEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCC---CceEE--ecCCC
Confidence 999999887643 34456788999999999999999999999999999995322 22222 22333
Q ss_pred eEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeE
Q psy9598 667 DSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQI 746 (1915)
Q Consensus 667 ~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I 746 (1915)
..++|.|.|.+||++...+.|+|||++....-.. . ............+.+.|||+|++|+.+.. .+.+
T Consensus 144 pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF----------~-tf~i~~~~~~ew~~l~FS~dGK~iLlsT~-~s~~ 211 (311)
T KOG1446|consen 144 PIAAFDPEGLIFALANGSELIKLYDLRSFDKGPF----------T-TFSITDNDEAEWTDLEFSPDGKSILLSTN-ASFI 211 (311)
T ss_pred cceeECCCCcEEEEecCCCeEEEEEecccCCCCc----------e-eEccCCCCccceeeeEEcCCCCEEEEEeC-CCcE
Confidence 4578999999999999888999999986531110 0 00111145677899999999999999998 9999
Q ss_pred EEEECCCCceEEEeeCCCCCe---EEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEc
Q psy9598 747 KIWDAFNGDLVQVLKGHTNEV---FVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWS 823 (1915)
Q Consensus 747 ~vwD~~tg~~i~~l~gH~~~V---~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafS 823 (1915)
++.|..+|..+.++.++...- ...+|+| ++.++++|+.||+|.+|++.++.. +..+. +.+.+++.++.|+
T Consensus 212 ~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftP-ds~Fvl~gs~dg~i~vw~~~tg~~--v~~~~----~~~~~~~~~~~fn 284 (311)
T KOG1446|consen 212 YLLDAFDGTVKSTFSGYPNAGNLPLSATFTP-DSKFVLSGSDDGTIHVWNLETGKK--VAVLR----GPNGGPVSCVRFN 284 (311)
T ss_pred EEEEccCCcEeeeEeeccCCCCcceeEEECC-CCcEEEEecCCCcEEEEEcCCCcE--eeEec----CCCCCCccccccC
Confidence 999999999999999886533 5677999 999999999999999999999988 66555 3356889999999
Q ss_pred CCCCEEEEEeCCCeEEEEeCC
Q psy9598 824 PDGTTCALTDSYGHLLVYGLG 844 (1915)
Q Consensus 824 pdg~~Lasg~~dG~I~Iwdl~ 844 (1915)
|...++|++++ .+.+|-..
T Consensus 285 P~~~mf~sa~s--~l~fw~p~ 303 (311)
T KOG1446|consen 285 PRYAMFVSASS--NLVFWLPD 303 (311)
T ss_pred CceeeeeecCc--eEEEEecc
Confidence 98888888877 68888554
|
|
| >KOG0647|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.6e-24 Score=236.82 Aligned_cols=283 Identities=14% Similarity=0.277 Sum_probs=221.1
Q ss_pred CCCCcEEEEEEcC-CCCEEEEEECCCcEEEEECCC-CcEE-EEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCC
Q psy9598 474 GHLSAVFCVLFDK-LGEVIVTGADDLLIKLWRARD-GKLL-ATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTL 550 (1915)
Q Consensus 474 gH~~~V~~vafsp-dg~~LaTGs~Dg~I~IWd~~t-g~~~-~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg 550 (1915)
.-.++|.+|+||| ...+|++||.||+|++|++.. |..+ .....|.++|.+++|+.||..+++|+.|+.+++||+.++
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~ 104 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG 104 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC
Confidence 4568999999999 566777999999999999976 4433 344579999999999999999999999999999999999
Q ss_pred ceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCC
Q psy9598 551 APISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGG 630 (1915)
Q Consensus 551 ~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg 630 (1915)
.+..+..|.++|.++.|.+.. ....|++||.|.+|++||.+....+.++.+. ..++++..- .
T Consensus 105 -Q~~~v~~Hd~pvkt~~wv~~~--~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LP-------------eRvYa~Dv~--~ 166 (347)
T KOG0647|consen 105 -QVSQVAAHDAPVKTCHWVPGM--NYQCLVTGSWDKTLKFWDTRSSNPVATLQLP-------------ERVYAADVL--Y 166 (347)
T ss_pred -CeeeeeecccceeEEEEecCC--CcceeEecccccceeecccCCCCeeeeeecc-------------ceeeehhcc--C
Confidence 466677899999999998844 3568999999999999999988766666554 556666553 3
Q ss_pred cEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceE-EeeecccccCC
Q psy9598 631 LFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWR-FIRLDMNTCLP 709 (1915)
Q Consensus 631 ~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~-~~~~~~~~~~~ 709 (1915)
.+++++..+..|.+|++.+........ .....-.+.||+...+...++.|+..|.+-|..+..+... .....+
T Consensus 167 pm~vVata~r~i~vynL~n~~te~k~~-~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkC----- 240 (347)
T KOG0647|consen 167 PMAVVATAERHIAVYNLENPPTEFKRI-ESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKC----- 240 (347)
T ss_pred ceeEEEecCCcEEEEEcCCCcchhhhh-cCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEE-----
Confidence 478889999999999995433222111 1123446889999999988999999999999988765211 000000
Q ss_pred CCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEE
Q psy9598 710 HTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSA 783 (1915)
Q Consensus 710 ~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSg 783 (1915)
+.........-..|++|+|+|....|+++|+ ||++.+||-.....+.+...|..+|++.+|+. +|.++|-+
T Consensus 241 -HR~~~~~~~~VYaVNsi~FhP~hgtlvTaGs-DGtf~FWDkdar~kLk~s~~~~qpItcc~fn~-~G~ifaYA 311 (347)
T KOG0647|consen 241 -HRSTNSVNDDVYAVNSIAFHPVHGTLVTAGS-DGTFSFWDKDARTKLKTSETHPQPITCCSFNR-NGSIFAYA 311 (347)
T ss_pred -eccCCCCCCceEEecceEeecccceEEEecC-CceEEEecchhhhhhhccCcCCCccceeEecC-CCCEEEEE
Confidence 0000011113567899999999999999999 99999999988888888899999999999998 88877755
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.6e-23 Score=265.31 Aligned_cols=268 Identities=18% Similarity=0.224 Sum_probs=207.3
Q ss_pred CCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEE-------------EEEeCCCCCEEEEEEeC-CCCEEEEEeCCC
Q psy9598 475 HLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLL-------------ATLRGCSGEISDIAIDN-RNILLAAGTVDK 540 (1915)
Q Consensus 475 H~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~-------------~~l~gH~~~I~~Lafsp-dg~~LaSgs~Dg 540 (1915)
|-..|.+..+++++..+++++.+..+..|+...+..+ ..+.||.+.|++|+|+| ++.+||+|+.|+
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dg 98 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDG 98 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCC
Confidence 3455666667777777777777777777775444322 14679999999999999 889999999999
Q ss_pred cEEEEECCCC-------ceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccc
Q psy9598 541 TIRIWNLQTL-------APISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNER 613 (1915)
Q Consensus 541 tIrVWDl~tg-------~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~ 613 (1915)
+|+|||+.++ .++..+.+|...|.+|+|+|.. .++|++|+.|++|+|||+.++..+..
T Consensus 99 tIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~---~~iLaSgs~DgtVrIWDl~tg~~~~~------------ 163 (493)
T PTZ00421 99 TIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSA---MNVLASAGADMVVNVWDVERGKAVEV------------ 163 (493)
T ss_pred EEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCC---CCEEEEEeCCCEEEEEECCCCeEEEE------------
Confidence 9999999764 3577899999999999999943 47999999999999999987753222
Q ss_pred cCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCC-eeEEEEcCCCCEEEEEe----CCCcEE
Q psy9598 614 IRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDK-VDSIQWSHSHLRFVSGS----RDGTAL 688 (1915)
Q Consensus 614 ~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~-V~sl~fspdg~~L~sgs----~DG~I~ 688 (1915)
+..|...|.+++|+|+|.+|++|+.||.|+|||++. ...+..+.+|.+. +..+.|.+++..|++++ .|+.|+
T Consensus 164 l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rs---g~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~Vk 240 (493)
T PTZ00421 164 IKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRD---GTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIM 240 (493)
T ss_pred EcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCC---CcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEE
Confidence 234667899999999999999999999999999953 3456677888765 44677898888877654 479999
Q ss_pred EEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeC-CCCCe
Q psy9598 689 IWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKG-HTNEV 767 (1915)
Q Consensus 689 IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~g-H~~~V 767 (1915)
|||++......... .......+....|++++.+|++++..|+.|++||+.++.++..+.. +..++
T Consensus 241 lWDlr~~~~p~~~~--------------~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~ 306 (493)
T PTZ00421 241 LWDTRKMASPYSTV--------------DLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPH 306 (493)
T ss_pred EEeCCCCCCceeEe--------------ccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCC
Confidence 99998654211100 0112345666789999999998885599999999999988777653 45567
Q ss_pred EEEEEcc
Q psy9598 768 FVLESHP 774 (1915)
Q Consensus 768 ~sl~~sp 774 (1915)
.+++|.|
T Consensus 307 ~g~~~~p 313 (493)
T PTZ00421 307 KGLCMMP 313 (493)
T ss_pred cceEecc
Confidence 8888888
|
|
| >KOG0310|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.2e-24 Score=251.36 Aligned_cols=285 Identities=18% Similarity=0.277 Sum_probs=238.4
Q ss_pred CCcEEEEEEcCCCCE-EEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEE
Q psy9598 476 LSAVFCVLFDKLGEV-IVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPIS 554 (1915)
Q Consensus 476 ~~~V~~vafspdg~~-LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~ 554 (1915)
.++|.+++|+|...+ +|+.+ .-.|.||+..+.....++......|.+++|..||.+||+|...|.|+|+|+.+...+.
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR 104 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILR 104 (487)
T ss_pred cCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHH
Confidence 389999999996544 33333 3479999999988888887788999999999999999999999999999987766788
Q ss_pred EeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCC-CcEE
Q psy9598 555 VLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPG-GLFL 633 (1915)
Q Consensus 555 ~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspd-g~~L 633 (1915)
.+.+|+.+|..+.|+|. ++..|++|+.|+.+++||+.+... ...+.+|...|.|.+|+|. +..+
T Consensus 105 ~~~ah~apv~~~~f~~~---d~t~l~s~sDd~v~k~~d~s~a~v------------~~~l~~htDYVR~g~~~~~~~hiv 169 (487)
T KOG0310|consen 105 QLYAHQAPVHVTKFSPQ---DNTMLVSGSDDKVVKYWDLSTAYV------------QAELSGHTDYVRCGDISPANDHIV 169 (487)
T ss_pred HHhhccCceeEEEeccc---CCeEEEecCCCceEEEEEcCCcEE------------EEEecCCcceeEeeccccCCCeEE
Confidence 89999999999999994 678999999999999999988742 1234578899999999996 4589
Q ss_pred EEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCcc
Q psy9598 634 ATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKE 713 (1915)
Q Consensus 634 asgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~ 713 (1915)
++||.||.|++||++... ..+.++ .|..+|.+|.|-|.|..|++++. ..|+|||+.++...
T Consensus 170 vtGsYDg~vrl~DtR~~~--~~v~el-nhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~ql--------------- 230 (487)
T KOG0310|consen 170 VTGSYDGKVRLWDTRSLT--SRVVEL-NHGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQL--------------- 230 (487)
T ss_pred EecCCCceEEEEEeccCC--ceeEEe-cCCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCcee---------------
Confidence 999999999999996543 334443 68999999999999999998865 57999999866522
Q ss_pred ccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEE
Q psy9598 714 TSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWD 793 (1915)
Q Consensus 714 ~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWd 793 (1915)
......|...|+|+++..++..|++++- |+.|+|||+.+.+.++.+. -.++|.+++.+| ++..++.|..+|.+.+=+
T Consensus 231 l~~~~~H~KtVTcL~l~s~~~rLlS~sL-D~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~-dd~t~viGmsnGlv~~rr 307 (487)
T KOG0310|consen 231 LTSMFNHNKTVTCLRLASDSTRLLSGSL-DRHVKVFDTTNYKVVHSWK-YPGPVLSIAVSP-DDQTVVIGMSNGLVSIRR 307 (487)
T ss_pred hhhhhcccceEEEEEeecCCceEeeccc-ccceEEEEccceEEEEeee-cccceeeEEecC-CCceEEEecccceeeeeh
Confidence 1223348889999999999999999998 9999999999999999886 567899999999 889999999999988775
Q ss_pred CCCCc
Q psy9598 794 ILSSK 798 (1915)
Q Consensus 794 l~s~~ 798 (1915)
....+
T Consensus 308 ~~~k~ 312 (487)
T KOG0310|consen 308 REVKK 312 (487)
T ss_pred hhccc
Confidence 54433
|
|
| >cd05496 Bromo_WDR9_II Bromodomain; WDR9 repeat II_like subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-25 Score=226.98 Aligned_cols=113 Identities=50% Similarity=0.993 Sum_probs=107.1
Q ss_pred chhhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCccccccCccchhhHHhhhcCCCCCCHHHHHHHHHHHHHHhhhhcC
Q psy9598 1530 PFNWKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQ 1609 (1915)
Q Consensus 1530 ~~~~~~~~~~ll~~l~~~~~s~~F~~pv~~~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~Dv~lif~Na~~yN~ 1609 (1915)
...|+++|..||+.|++++.++||+.|||...+||||+||++||||+||++||.+|.|.++++|..||+|||.||+.||+
T Consensus 3 ~~~w~~~c~~il~~l~~~~~s~~F~~PVd~~~~pdY~~iIk~PmDL~tIk~kL~~~~Y~~~~ef~~D~~lif~Na~~yN~ 82 (119)
T cd05496 3 ESDWKKQCKELVNLMWDCEDSEPFRQPVDLLKYPDYRDIIDTPMDLGTVKETLFGGNYDDPMEFAKDVRLIFSNSKSYTP 82 (119)
T ss_pred HHHHHHHHHHHHHHHHhCCccccccCCCChhhcCcHHHHhCCcccHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy9598 1610 NKRSKIYIMTTRLSEFAEEHLRRLTVRWNSHKN 1642 (1915)
Q Consensus 1610 ~~~s~i~~~a~~l~~~f~~~~~~~~~~~~~~~~ 1642 (1915)
+++|.||.+|..|+++|++++.++...|+.++.
T Consensus 83 ~~~s~i~~~a~~L~~~F~~~~~~l~~~~~~~~~ 115 (119)
T cd05496 83 NKRSRIYSMTLRLSALFEEHIKKIISDWKSALK 115 (119)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 645999999999999999999999998875544
|
WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >KOG1063|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.1e-24 Score=254.56 Aligned_cols=381 Identities=21% Similarity=0.258 Sum_probs=287.9
Q ss_pred cccCCCeEEEecccCCceeeeEEecCCCCcEEEEEEcCCCC---EEEEEECCCcEEEEECCCCc----------------
Q psy9598 449 SGPLSRSLMISSHKYSNLRQHYVNLGHLSAVFCVLFDKLGE---VIVTGADDLLIKLWRARDGK---------------- 509 (1915)
Q Consensus 449 tg~~d~~~~i~~~~~~~~~~~~~l~gH~~~V~~vafspdg~---~LaTGs~Dg~I~IWd~~tg~---------------- 509 (1915)
.|+.+..+.+.......+.....|.||.+.|.+|+|...+. +||+||+|..|+||.+.-+.
T Consensus 164 ~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~ 243 (764)
T KOG1063|consen 164 CGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSN 243 (764)
T ss_pred ecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccC
Confidence 35666777776666678889999999999999999986554 89999999999999763221
Q ss_pred -----EE----------EEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCce-------EEEeecCCCCeEEEE
Q psy9598 510 -----LL----------ATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAP-------ISVLVGHQGIITGVN 567 (1915)
Q Consensus 510 -----~~----------~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~-------~~~l~~h~~~V~sl~ 567 (1915)
.. ..+.||...|+++.|+|.+..|+|+|.|.++.||...+..- +..+.|..+..++..
T Consensus 244 ~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~l 323 (764)
T KOG1063|consen 244 LPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGL 323 (764)
T ss_pred CceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEE
Confidence 11 12249999999999999999999999999999998765321 222334556788999
Q ss_pred eccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEe
Q psy9598 568 FCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKM 647 (1915)
Q Consensus 568 fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl 647 (1915)
|+|+ ++.+++-+..|..++|-....... .....+.+|...|..++|+|.|.+|++.|.|.+-+||--
T Consensus 324 w~~n----~~~ii~~g~~Gg~hlWkt~d~~~w---------~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~ 390 (764)
T KOG1063|consen 324 WSPN----SNVIIAHGRTGGFHLWKTKDKTFW---------TQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFAR 390 (764)
T ss_pred EcCC----CCEEEEecccCcEEEEeccCccce---------eeccccccccccceeeeecCCCCEEEEeccccceeeecc
Confidence 9994 488999999999999982222110 111234578899999999999999999999999999976
Q ss_pred cCC-CCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCc----------e------------EE-----
Q psy9598 648 DGV-DSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQ----------W------------RF----- 699 (1915)
Q Consensus 648 ~~~-~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~----------~------------~~----- 699 (1915)
-+. .....+...+-|...++|++|-+....|++|.....+|+|+....- + +.
T Consensus 391 wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLS 470 (764)
T KOG1063|consen 391 WGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLS 470 (764)
T ss_pred cccccceeeecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhccccccccccccc
Confidence 311 1223333445688899999998877789999999999999754110 0 00
Q ss_pred ---eee-cccc----------c-------C------------CCCccccccccccccEEEEEECCCCCEEEEEEec----
Q psy9598 700 ---IRL-DMNT----------C-------L------------PHTKETSDETNKKIKVTMVAWDASDRWVITAINF---- 742 (1915)
Q Consensus 700 ---~~~-~~~~----------~-------~------------~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~---- 742 (1915)
... ...+ . + ...+......+|...|.+++.+|+|++|++++..
T Consensus 471 nKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~e 550 (764)
T KOG1063|consen 471 NKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKE 550 (764)
T ss_pred CCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCcc
Confidence 000 0000 0 0 0001122356788999999999999999998852
Q ss_pred CCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEE
Q psy9598 743 NFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKW 822 (1915)
Q Consensus 743 Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vaf 822 (1915)
...|++|+..+...+..+.+|.-.|+.|+|+| |+++|+++|.|.++.+|....+.... ..|. ....|..-|+++.|
T Consensus 551 hAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSp-dg~~LLsvsRDRt~sl~~~~~~~~~e-~~fa--~~k~HtRIIWdcsW 626 (764)
T KOG1063|consen 551 HAVIRLWNTANWLQVQELEGHSLTVTRLAFSP-DGRYLLSVSRDRTVSLYEVQEDIKDE-FRFA--CLKAHTRIIWDCSW 626 (764)
T ss_pred ceEEEEEeccchhhhheecccceEEEEEEECC-CCcEEEEeecCceEEeeeeecccchh-hhhc--cccccceEEEEccc
Confidence 23699999999999999999999999999999 99999999999999999986544311 1122 12356678999999
Q ss_pred cCCCCEEEEEeCCCeEEEEeCCCC
Q psy9598 823 SPDGTTCALTDSYGHLLVYGLGGF 846 (1915)
Q Consensus 823 Spdg~~Lasg~~dG~I~Iwdl~s~ 846 (1915)
+|++.+||+++.|..|.||.....
T Consensus 627 ~pde~~FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 627 SPDEKYFATASRDKKVKVWEEPDL 650 (764)
T ss_pred CcccceeEEecCCceEEEEeccCc
Confidence 999999999999999999999877
|
|
| >KOG0277|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.6e-24 Score=230.28 Aligned_cols=283 Identities=17% Similarity=0.197 Sum_probs=222.3
Q ss_pred EEEEEeC--CCCEEEEE------eCCCcEEEEECCCCceEEEee--cCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEE
Q psy9598 522 SDIAIDN--RNILLAAG------TVDKTIRIWNLQTLAPISVLV--GHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFW 591 (1915)
Q Consensus 522 ~~Lafsp--dg~~LaSg------s~DgtIrVWDl~tg~~~~~l~--~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iW 591 (1915)
.++.||| .+++.+++ ...|.+.|.++..+.-+..+. .-.+.+..++|++.. .+.+++++.||++++|
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~---e~~~~~a~GDGSLrl~ 88 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENH---ENQVIAASGDGSLRLF 88 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCC---cceEEEEecCceEEEe
Confidence 5788888 34333322 136899999997554444443 345789999999954 5899999999999999
Q ss_pred ecccCccccceeccCccccccccCCCCCceEEEEECCC-CcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEE
Q psy9598 592 KYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPG-GLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQ 670 (1915)
Q Consensus 592 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspd-g~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~ 670 (1915)
|+.... .....+..|...|.++.|++. +..+++++.||+|++|+. ..+..+.++.+|...|...+
T Consensus 89 d~~~~s-----------~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~---~r~~Sv~Tf~gh~~~Iy~a~ 154 (311)
T KOG0277|consen 89 DLTMPS-----------KPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDP---NRPNSVQTFNGHNSCIYQAA 154 (311)
T ss_pred ccCCCC-----------cchhHHHhhhhheEEeccccccceeEEeeccCCceEeecC---CCCcceEeecCCccEEEEEe
Confidence 954332 122345567899999999984 567888899999999998 45667888999999999999
Q ss_pred EcCC-CCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEE
Q psy9598 671 WSHS-HLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIW 749 (1915)
Q Consensus 671 fspd-g~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vw 749 (1915)
|+|. .+.|+++|.||++++||++...... ....|...|.++.|+.-...++++++.|+.|++|
T Consensus 155 ~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~----------------~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~w 218 (311)
T KOG0277|consen 155 FSPHIPNLFASASGDGTLRLWDVRSPGKFM----------------SIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGW 218 (311)
T ss_pred cCCCCCCeEEEccCCceEEEEEecCCCcee----------------EEEeccceeEeecccccCCcEEEecCCCceEEEE
Confidence 9985 6799999999999999987543111 1334778999999998766655555559999999
Q ss_pred ECCCC-ceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcC-CCC
Q psy9598 750 DAFNG-DLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSP-DGT 827 (1915)
Q Consensus 750 D~~tg-~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSp-dg~ 827 (1915)
|+++. .++..+.+|.-.|..|.|+|....+|+|++.|-+++|||...+... +.++. +|..-|..+.||+ ++.
T Consensus 219 Dir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~-~e~~~-----~HtEFv~g~Dws~~~~~ 292 (311)
T KOG0277|consen 219 DIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSA-IETVD-----HHTEFVCGLDWSLFDPG 292 (311)
T ss_pred ehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhh-hhhhh-----ccceEEeccccccccCc
Confidence 99874 5788999999999999999988899999999999999999754431 22332 5667889999998 788
Q ss_pred EEEEEeCCCeEEEEeC
Q psy9598 828 TCALTDSYGHLLVYGL 843 (1915)
Q Consensus 828 ~Lasg~~dG~I~Iwdl 843 (1915)
++|+++.|+.++||+-
T Consensus 293 ~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 293 QVASTGWDELLYVWNP 308 (311)
T ss_pred eeeecccccceeeecc
Confidence 9999999999999984
|
|
| >KOG0283|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.5e-24 Score=261.65 Aligned_cols=304 Identities=18% Similarity=0.200 Sum_probs=211.1
Q ss_pred EEEEe-CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEE
Q psy9598 511 LATLR-GCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIG 589 (1915)
Q Consensus 511 ~~~l~-gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~ 589 (1915)
.+.+. .|.+.|.+|.||+||+|||+||.|+.|+||.+..... +..+.+.-.++.+.-.. .+....+.+..+.+.
T Consensus 259 ~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~---~~~~~~~~~~~~~~~~~--~s~~~p~~s~~~~~~ 333 (712)
T KOG0283|consen 259 VQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESER---MRVAEGDSSCMYFEYNA--NSQIEPSTSSEEKIS 333 (712)
T ss_pred eeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccch---hcccccccchhhhhhhh--ccccCcccccccccc
Confidence 34455 8999999999999999999999999999999865332 11112221222211100 000111111110000
Q ss_pred E--EecccCccccc-----eeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccC
Q psy9598 590 F--WKYKLDIDISK-----TVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEH 662 (1915)
Q Consensus 590 i--WDl~~~~~~~~-----~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h 662 (1915)
- -..+.+..... ..+.-.......+.+|.+.|..++||.++ +|++++.|.+|+||++. ...++..+ .|
T Consensus 334 ~~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~---~~~CL~~F-~H 408 (712)
T KOG0283|consen 334 SRTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPG---RKECLKVF-SH 408 (712)
T ss_pred ccccccccccCCccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCC---CcceeeEE-ec
Confidence 0 00011110001 01111112234567899999999999876 89999999999999993 33444443 69
Q ss_pred CCCeeEEEEcC-CCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEe
Q psy9598 663 SDKVDSIQWSH-SHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAIN 741 (1915)
Q Consensus 663 ~~~V~sl~fsp-dg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~ 741 (1915)
.+.|+||+|+| |.++|++||.||.|+||++...+.... ......|+++||.|+|.+.++|+-
T Consensus 409 ndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W-----------------~Dl~~lITAvcy~PdGk~avIGt~ 471 (712)
T KOG0283|consen 409 NDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDW-----------------NDLRDLITAVCYSPDGKGAVIGTF 471 (712)
T ss_pred CCeeEEEEecccCCCcEeecccccceEEeecCcCeeEee-----------------hhhhhhheeEEeccCCceEEEEEe
Confidence 99999999999 567999999999999999987764432 223467999999999999999998
Q ss_pred cCCeEEEEECCCCceEEEeeC--C------CCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCC
Q psy9598 742 FNFQIKIWDAFNGDLVQVLKG--H------TNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQG 813 (1915)
Q Consensus 742 ~Dg~I~vwD~~tg~~i~~l~g--H------~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~ 813 (1915)
+|.+++|+....+++..+.. | ...|+++.|.|.+...|++.+.|..|+|+|.....+ +..|..+. .
T Consensus 472 -~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~l--v~KfKG~~---n 545 (712)
T KOG0283|consen 472 -NGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDL--VHKFKGFR---N 545 (712)
T ss_pred -ccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhh--hhhhcccc---c
Confidence 99999999988777665532 1 127999999997777788889999999999977766 55554211 1
Q ss_pred CcceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc
Q psy9598 814 EGALFDGKWSPDGTTCALTDSYGHLLVYGLGGFK 847 (1915)
Q Consensus 814 ~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl~s~~ 847 (1915)
.+.-....|+.||++|++++.|..|+||++....
T Consensus 546 ~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~~ 579 (712)
T KOG0283|consen 546 TSSQISASFSSDGKHIVSASEDSWVYIWKNDSFN 579 (712)
T ss_pred CCcceeeeEccCCCEEEEeecCceEEEEeCCCCc
Confidence 1234567899999999999999999999986543
|
|
| >KOG2096|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-23 Score=231.56 Aligned_cols=299 Identities=17% Similarity=0.182 Sum_probs=218.4
Q ss_pred eEEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEE--E--EeCCCCCEEEEEEeCCCCEE-EEEeCCCcEE
Q psy9598 469 HYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLA--T--LRGCSGEISDIAIDNRNILL-AAGTVDKTIR 543 (1915)
Q Consensus 469 ~~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~--~--l~gH~~~I~~Lafspdg~~L-aSgs~DgtIr 543 (1915)
...|.||.+.|+|++|+.||++|||++.|++|+||++.+..... . ..-.-+.-+.+.|.||-+-+ +++-...+++
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLC 158 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEE
Confidence 34788999999999999999999999999999999998753211 0 11112346789999997644 4455566899
Q ss_pred EEECCC---CceEEE---------eecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccc
Q psy9598 544 IWNLQT---LAPISV---------LVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFN 611 (1915)
Q Consensus 544 VWDl~t---g~~~~~---------l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~ 611 (1915)
+|.+.. |...+. -.-|...|..+.... ++.+|++++.|..|.+|++. |+.+..+...
T Consensus 159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~----~~k~imsas~dt~i~lw~lk-Gq~L~~idtn------ 227 (420)
T KOG2096|consen 159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAG----NAKYIMSASLDTKICLWDLK-GQLLQSIDTN------ 227 (420)
T ss_pred EEEeeecccCCCCcccccccccccchhcccceEEEeecC----CceEEEEecCCCcEEEEecC-Cceeeeeccc------
Confidence 998742 222111 123555666666554 56899999999999999998 5554444332
Q ss_pred cccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecC-----CCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCc
Q psy9598 612 ERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDG-----VDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGT 686 (1915)
Q Consensus 612 ~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~-----~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~ 686 (1915)
...-+.+++||+|++|++++.---|+||.+-- ......++.+.||...|..++|+++...+++.|.||+
T Consensus 228 ------q~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~ 301 (420)
T KOG2096|consen 228 ------QSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGK 301 (420)
T ss_pred ------cccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCc
Confidence 23346688999999999999999999998731 1234567789999999999999999999999999999
Q ss_pred EEEEEccCCceEEeeeccccc-CCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEee-CCC
Q psy9598 687 ALIWYYKCSQWRFIRLDMNTC-LPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLK-GHT 764 (1915)
Q Consensus 687 I~IWDl~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~-gH~ 764 (1915)
++|||+.-.- ....... +.... .......+.-..+.++|.|..|+++. ...|++|...+|+..-.+. .|.
T Consensus 302 wriwdtdVrY----~~~qDpk~Lk~g~--~pl~aag~~p~RL~lsP~g~~lA~s~--gs~l~~~~se~g~~~~~~e~~h~ 373 (420)
T KOG2096|consen 302 WRIWDTDVRY----EAGQDPKILKEGS--APLHAAGSEPVRLELSPSGDSLAVSF--GSDLKVFASEDGKDYPELEDIHS 373 (420)
T ss_pred EEEeeccceE----ecCCCchHhhcCC--cchhhcCCCceEEEeCCCCcEEEeec--CCceEEEEcccCccchhHHHhhc
Confidence 9999975321 0000000 00000 11112233334899999999998876 4689999999998877775 799
Q ss_pred CCeEEEEEccCCCCEEEEEecCceEEEEEC
Q psy9598 765 NEVFVLESHPFDSRVLLSAGHDGLIIIWDI 794 (1915)
Q Consensus 765 ~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl 794 (1915)
..|.+|+|++ +|++++|+| |..++++.-
T Consensus 374 ~~Is~is~~~-~g~~~atcG-dr~vrv~~n 401 (420)
T KOG2096|consen 374 TTISSISYSS-DGKYIATCG-DRYVRVIRN 401 (420)
T ss_pred CceeeEEecC-CCcEEeeec-ceeeeeecC
Confidence 9999999999 999999998 667777653
|
|
| >KOG0301|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-23 Score=252.74 Aligned_cols=284 Identities=21% Similarity=0.317 Sum_probs=238.3
Q ss_pred ceeeeEEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEE--EEEeCCCCCEEE-EEEeC-CCCEEEEEeCCC
Q psy9598 465 NLRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLL--ATLRGCSGEISD-IAIDN-RNILLAAGTVDK 540 (1915)
Q Consensus 465 ~~~~~~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~--~~l~gH~~~I~~-Lafsp-dg~~LaSgs~Dg 540 (1915)
.+++.+.+.||..-|..|++.+ +..+++||.||+++||+-...+.+ +.+.+|.+.|.+ +++-+ ++-.|++|+.|+
T Consensus 3 ~Y~ls~~l~gH~~DVr~v~~~~-~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~ 81 (745)
T KOG0301|consen 3 QYKLSHELEGHKSDVRAVAVTD-GVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDT 81 (745)
T ss_pred cceeEEEeccCccchheeEecC-CeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccc
Confidence 4567789999999998888775 448999999999999997665544 457788888887 88875 555799999999
Q ss_pred cEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCc
Q psy9598 541 TIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAH 620 (1915)
Q Consensus 541 tIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (1915)
+|.+|.+.+..++.+|.+|...|.|+..... ..+++||.|.++++|-.... ...+.+|...
T Consensus 82 ~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~-----~~~iSgSWD~TakvW~~~~l--------------~~~l~gH~as 142 (745)
T KOG0301|consen 82 TIIVFKLSQAEPLYTLKGHKSNVCSLSIGED-----GTLISGSWDSTAKVWRIGEL--------------VYSLQGHTAS 142 (745)
T ss_pred eEEEEecCCCCchhhhhccccceeeeecCCc-----CceEecccccceEEecchhh--------------hcccCCcchh
Confidence 9999999999999999999999999987653 34999999999999975432 1225688999
Q ss_pred eEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEe
Q psy9598 621 ILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFI 700 (1915)
Q Consensus 621 V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~ 700 (1915)
|+++.+-|.+ .+++|+.|.+|++|.- ...+.++.+|++.|.++++-+++ .|+||+.||.|++|++ ++.++.
T Consensus 143 VWAv~~l~e~-~~vTgsaDKtIklWk~-----~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~- 213 (745)
T KOG0301|consen 143 VWAVASLPEN-TYVTGSADKTIKLWKG-----GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLL- 213 (745)
T ss_pred eeeeeecCCC-cEEeccCcceeeeccC-----CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEec-cCceee-
Confidence 9999999988 8999999999999975 34567789999999999998765 6899999999999999 444332
Q ss_pred eecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEE
Q psy9598 701 RLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVL 780 (1915)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~L 780 (1915)
...+|..-|.+++...++..|++++. |++++||+.. .+.+.+.-....|+++.+-+ +|. |
T Consensus 214 ---------------~~~ghtn~vYsis~~~~~~~Ivs~gE-DrtlriW~~~--e~~q~I~lPttsiWsa~~L~-NgD-I 273 (745)
T KOG0301|consen 214 ---------------EMHGHTNFVYSISMALSDGLIVSTGE-DRTLRIWKKD--ECVQVITLPTTSIWSAKVLL-NGD-I 273 (745)
T ss_pred ---------------eeeccceEEEEEEecCCCCeEEEecC-CceEEEeecC--ceEEEEecCccceEEEEEee-CCC-E
Confidence 23468889999998888999999998 9999999975 88888886677899999887 665 7
Q ss_pred EEEecCceEEEEECCCC
Q psy9598 781 LSAGHDGLIIIWDILSS 797 (1915)
Q Consensus 781 aSgs~DG~I~IWdl~s~ 797 (1915)
++||.||.|+||.....
T Consensus 274 vvg~SDG~VrVfT~~k~ 290 (745)
T KOG0301|consen 274 VVGGSDGRVRVFTVDKD 290 (745)
T ss_pred EEeccCceEEEEEeccc
Confidence 78999999999988743
|
|
| >KOG0288|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=8e-25 Score=249.38 Aligned_cols=276 Identities=17% Similarity=0.277 Sum_probs=230.5
Q ss_pred chhhccc--CccccccCCCeEEEecccCCceeeeEEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEe
Q psy9598 438 NTVNVLR--SREYSGPLSRSLMISSHKYSNLRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLR 515 (1915)
Q Consensus 438 ~~v~~l~--~r~~tg~~d~~~~i~~~~~~~~~~~~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~ 515 (1915)
+.+.++. +++.+|+.|+.+.+|.........+.+|.|..++|+++.|.+++.++++++.|+.+++|++..+++..+|.
T Consensus 179 ~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLs 258 (459)
T KOG0288|consen 179 HDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLS 258 (459)
T ss_pred ceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhc
Confidence 3444443 56789999999999998888888899999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEeccc
Q psy9598 516 GCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKL 595 (1915)
Q Consensus 516 gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~ 595 (1915)
||++.|+++.|......+++|+.|.+|++||+....|..++.. ...+..|+.++ ..+++|-.|+.|++||+++
T Consensus 259 GHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~-~S~cnDI~~~~------~~~~SgH~DkkvRfwD~Rs 331 (459)
T KOG0288|consen 259 GHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLP-GSQCNDIVCSI------SDVISGHFDKKVRFWDIRS 331 (459)
T ss_pred ccccceeeehhhccccceeeccccchhhhhhhhhhheeccccc-cccccceEecc------eeeeecccccceEEEeccC
Confidence 9999999999988877799999999999999999888876643 34556666654 6889999999999999998
Q ss_pred CccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEecc--CCCCeeEEEEcC
Q psy9598 596 DIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEE--HSDKVDSIQWSH 673 (1915)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~--h~~~V~sl~fsp 673 (1915)
.........+ +.|+++..+++|..|.+++.|.++.++|+++...... +...+ -...++.++|||
T Consensus 332 ~~~~~sv~~g-------------g~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~-~sA~g~k~asDwtrvvfSp 397 (459)
T KOG0288|consen 332 ADKTRSVPLG-------------GRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQT-FSAEGFKCASDWTRVVFSP 397 (459)
T ss_pred CceeeEeecC-------------cceeeEeeccCCeEEeeecCCCceeeeecccccEEEE-eeccccccccccceeEECC
Confidence 8765554443 6899999999999999999999999999965432221 11111 123488899999
Q ss_pred CCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEE
Q psy9598 674 SHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIW 749 (1915)
Q Consensus 674 dg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vw 749 (1915)
++.|+++||.||.|+||++.++++...... ......|++++|++.|.++++++. ++.+.+|
T Consensus 398 d~~YvaAGS~dgsv~iW~v~tgKlE~~l~~--------------s~s~~aI~s~~W~~sG~~Llsadk-~~~v~lW 458 (459)
T KOG0288|consen 398 DGSYVAAGSADGSVYIWSVFTGKLEKVLSL--------------STSNAAITSLSWNPSGSGLLSADK-QKAVTLW 458 (459)
T ss_pred CCceeeeccCCCcEEEEEccCceEEEEecc--------------CCCCcceEEEEEcCCCchhhcccC-CcceEec
Confidence 999999999999999999999986654321 112237999999999999999998 9999998
|
|
| >KOG2048|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.4e-22 Score=241.93 Aligned_cols=284 Identities=18% Similarity=0.225 Sum_probs=225.3
Q ss_pred CCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCC-cEEEEEeCC-CCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCce
Q psy9598 475 HLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDG-KLLATLRGC-SGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAP 552 (1915)
Q Consensus 475 H~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg-~~~~~l~gH-~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~ 552 (1915)
-...|+|+||+...+.||.|-.||.|-||++..+ -+...+.|+ ...|-+|+|+ ++..|+|.+.+|.|.-||+.++++
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~ 102 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLKQ 102 (691)
T ss_pred eccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccCce
Confidence 3589999999999999999999999999999876 344566666 4579999999 455788888999999999999999
Q ss_pred EEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcE
Q psy9598 553 ISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLF 632 (1915)
Q Consensus 553 ~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~ 632 (1915)
...+....+.|++++.+|.. ..++.||.||.+.+++...+.......+ ....+.|.|++|++++..
T Consensus 103 ~~~~d~~gg~IWsiai~p~~----~~l~IgcddGvl~~~s~~p~~I~~~r~l----------~rq~sRvLslsw~~~~~~ 168 (691)
T KOG2048|consen 103 KYNIDSNGGAIWSIAINPEN----TILAIGCDDGVLYDFSIGPDKITYKRSL----------MRQKSRVLSLSWNPTGTK 168 (691)
T ss_pred eEEecCCCcceeEEEeCCcc----ceEEeecCCceEEEEecCCceEEEEeec----------ccccceEEEEEecCCccE
Confidence 99999999999999999954 8999999999888887766643322222 233588999999999999
Q ss_pred EEEEeCCCeEEEEEecCCCCCceeEE-----ecc-CCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccc
Q psy9598 633 LATGSGDHHVRVYKMDGVDSPLGILE-----VEE-HSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNT 706 (1915)
Q Consensus 633 Lasgs~Dg~I~IwDl~~~~~~~~i~~-----l~~-h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~ 706 (1915)
|++|+.||.|++||+....... +.+ +.. ...-|++|.|-.++ .|++|..-|+|.+||...+...
T Consensus 169 i~~Gs~Dg~Iriwd~~~~~t~~-~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLi-------- 238 (691)
T KOG2048|consen 169 IAGGSIDGVIRIWDVKSGQTLH-IITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLI-------- 238 (691)
T ss_pred EEecccCceEEEEEcCCCceEE-EeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcchh--------
Confidence 9999999999999995433222 111 111 23457888887554 7999999999999998877632
Q ss_pred cCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCce----EEEeeCCCCCeEEEEEccCCCCEEEE
Q psy9598 707 CLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDL----VQVLKGHTNEVFVLESHPFDSRVLLS 782 (1915)
Q Consensus 707 ~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~----i~~l~gH~~~V~sl~~sp~dg~~LaS 782 (1915)
.....|...|.+++.++++.++++++- |+.|..|...+... ......|...|.+++..+ ..|++
T Consensus 239 --------qS~~~h~adVl~Lav~~~~d~vfsaGv-d~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~---~~l~s 306 (691)
T KOG2048|consen 239 --------QSHSCHDADVLALAVADNEDRVFSAGV-DPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIE---NALIS 306 (691)
T ss_pred --------hhhhhhhcceeEEEEcCCCCeEEEccC-CCceEEEEecCCccceeeeccccCCcccceeeeeec---ceEEe
Confidence 234558889999999999999999998 99998888766532 223347888899999887 48888
Q ss_pred EecCceEEEEECC
Q psy9598 783 AGHDGLIIIWDIL 795 (1915)
Q Consensus 783 gs~DG~I~IWdl~ 795 (1915)
||.|+++.+-...
T Consensus 307 gG~d~~l~i~~s~ 319 (691)
T KOG2048|consen 307 GGRDFTLAICSSR 319 (691)
T ss_pred cceeeEEEEcccc
Confidence 9988887776543
|
|
| >KOG0316|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=1e-23 Score=224.04 Aligned_cols=264 Identities=17% Similarity=0.227 Sum_probs=218.5
Q ss_pred CccccccCCCeEEEecccCCceeeeEEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEE
Q psy9598 445 SREYSGPLSRSLMISSHKYSNLRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDI 524 (1915)
Q Consensus 445 ~r~~tg~~d~~~~i~~~~~~~~~~~~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~L 524 (1915)
.-.++.+.++++.+|... .-.++++..||...|..++.+.|+..|++|+.|..|.+||+.||+.++.|+||.+.|+.+
T Consensus 30 nY~ltcGsdrtvrLWNp~--rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV 107 (307)
T KOG0316|consen 30 NYCLTCGSDRTVRLWNPL--RGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTV 107 (307)
T ss_pred CEEEEcCCCceEEeeccc--ccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccceeeEE
Confidence 345678889999999643 334567899999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCEEEEEeCCCcEEEEECCC--CceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccce
Q psy9598 525 AIDNRNILLAAGTVDKTIRIWNLQT--LAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKT 602 (1915)
Q Consensus 525 afspdg~~LaSgs~DgtIrVWDl~t--g~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~ 602 (1915)
.|+.+...+++|+.|.+|++||.++ .++++.+....+.|.+|.... ..|++||.||+++.||++.+......
T Consensus 108 ~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~------heIvaGS~DGtvRtydiR~G~l~sDy 181 (307)
T KOG0316|consen 108 RFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAE------HEIVAGSVDGTVRTYDIRKGTLSSDY 181 (307)
T ss_pred EecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecc------cEEEeeccCCcEEEEEeecceeehhh
Confidence 9999999999999999999999975 578899988889999999976 78999999999999999988542222
Q ss_pred eccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCee--EEEEcCCCCEEEE
Q psy9598 603 VFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVD--SIQWSHSHLRFVS 680 (1915)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~--sl~fspdg~~L~s 680 (1915)
. ..+|+|++|+++|+.+++++.|++|++.|- .+...+....+|.+.-. ..+++....++++
T Consensus 182 ~--------------g~pit~vs~s~d~nc~La~~l~stlrLlDk---~tGklL~sYkGhkn~eykldc~l~qsdthV~s 244 (307)
T KOG0316|consen 182 F--------------GHPITSVSFSKDGNCSLASSLDSTLRLLDK---ETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFS 244 (307)
T ss_pred c--------------CCcceeEEecCCCCEEEEeeccceeeeccc---chhHHHHHhcccccceeeeeeeecccceeEEe
Confidence 1 257999999999999999999999999997 44556667788877543 3457777889999
Q ss_pred EeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEE
Q psy9598 681 GSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWD 750 (1915)
Q Consensus 681 gs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD 750 (1915)
||.||.|.+||+.....+... .......|..++++|.-..+++++ ++.+..|-
T Consensus 245 gSEDG~Vy~wdLvd~~~~sk~---------------~~~~~v~v~dl~~hp~~~~f~~A~--~~~~~~~~ 297 (307)
T KOG0316|consen 245 GSEDGKVYFWDLVDETQISKL---------------SVVSTVIVTDLSCHPTMDDFITAT--GHGDLFWY 297 (307)
T ss_pred ccCCceEEEEEeccceeeeee---------------ccCCceeEEeeecccCccceeEec--CCceecee
Confidence 999999999999876533211 011223378899999877777776 45666664
|
|
| >KOG0268|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.7e-24 Score=242.65 Aligned_cols=286 Identities=17% Similarity=0.346 Sum_probs=227.0
Q ss_pred EecCCCCcEEEEEEcCCC-CEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCC
Q psy9598 471 VNLGHLSAVFCVLFDKLG-EVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQT 549 (1915)
Q Consensus 471 ~l~gH~~~V~~vafspdg-~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~t 549 (1915)
.|.||.++|.|++=+|.. ..+|+|+.||.|+|||+....++.+|..|.+.|..|+++. ..+++++.|.+|+.|-+..
T Consensus 61 ~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~ 138 (433)
T KOG0268|consen 61 SLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDG 138 (433)
T ss_pred hccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccC
Confidence 567999999999999977 7899999999999999999999999999999999999987 5788999999999999875
Q ss_pred CceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCC
Q psy9598 550 LAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPG 629 (1915)
Q Consensus 550 g~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspd 629 (1915)
.+++++.+. ..+..|.-+- .+..++|||.+ |-|||......+..+... ...|.|+.|+|.
T Consensus 139 -~p~~tilg~-s~~~gIdh~~----~~~~FaTcGe~--i~IWD~~R~~Pv~smswG------------~Dti~svkfNpv 198 (433)
T KOG0268|consen 139 -PPLHTILGK-SVYLGIDHHR----KNSVFATCGEQ--IDIWDEQRDNPVSSMSWG------------ADSISSVKFNPV 198 (433)
T ss_pred -Ccceeeecc-cccccccccc----ccccccccCce--eeecccccCCccceeecC------------CCceeEEecCCC
Confidence 467777553 3445555443 33678888764 899998766554444433 467999999997
Q ss_pred Cc-EEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccC
Q psy9598 630 GL-FLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCL 708 (1915)
Q Consensus 630 g~-~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~ 708 (1915)
.. .|++|+.|+.|.|||++.......+ .+ ...-+.|+|+|.+-.|++|+.|..++.||++...
T Consensus 199 ETsILas~~sDrsIvLyD~R~~~Pl~KV-i~---~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~------------ 262 (433)
T KOG0268|consen 199 ETSILASCASDRSIVLYDLRQASPLKKV-IL---TMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLS------------ 262 (433)
T ss_pred cchheeeeccCCceEEEecccCCcccee-ee---eccccceecCccccceeeccccccceehhhhhhc------------
Confidence 54 5677779999999999654332222 22 3345678999988899999999999999998654
Q ss_pred CCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeC-CCCCeEEEEEccCCCCEEEEEecCc
Q psy9598 709 PHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKG-HTNEVFVLESHPFDSRVLLSAGHDG 787 (1915)
Q Consensus 709 ~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~g-H~~~V~sl~~sp~dg~~LaSgs~DG 787 (1915)
.......+|...|..|.|||.|+-+++|+. |.+|+||.+..+...-++.. .-..|+||.|+- |..++++||.||
T Consensus 263 ---~p~~v~~dhvsAV~dVdfsptG~Efvsgsy-DksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~-Dskyi~SGSdd~ 337 (433)
T KOG0268|consen 263 ---RPLNVHKDHVSAVMDVDFSPTGQEFVSGSY-DKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSM-DSKYIISGSDDG 337 (433)
T ss_pred ---ccchhhcccceeEEEeccCCCcchhccccc-cceEEEeecCCCcchhhhhHhhhheeeEEEEec-cccEEEecCCCc
Confidence 122345668899999999999999999998 99999999987654333211 123689999999 999999999999
Q ss_pred eEEEEECCCCcc
Q psy9598 788 LIIIWDILSSKQ 799 (1915)
Q Consensus 788 ~I~IWdl~s~~~ 799 (1915)
.|++|.....+.
T Consensus 338 nvRlWka~Asek 349 (433)
T KOG0268|consen 338 NVRLWKAKASEK 349 (433)
T ss_pred ceeeeecchhhh
Confidence 999998876544
|
|
| >KOG1408|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.6e-23 Score=244.95 Aligned_cols=328 Identities=19% Similarity=0.220 Sum_probs=258.7
Q ss_pred EEEEEcCCCCEEEEEECCCcEEEEECCCCcE---EEEEeCCCCCEEEEEEeCC-----------CCEEEEEeCCCcEEEE
Q psy9598 480 FCVLFDKLGEVIVTGADDLLIKLWRARDGKL---LATLRGCSGEISDIAIDNR-----------NILLAAGTVDKTIRIW 545 (1915)
Q Consensus 480 ~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~---~~~l~gH~~~I~~Lafspd-----------g~~LaSgs~DgtIrVW 545 (1915)
.++.|++....|.+.-.|..|.|||+.+-.. ...+--|...|+++.--|. ...+++++.|++||+|
T Consensus 328 IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW 407 (1080)
T KOG1408|consen 328 IACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLW 407 (1080)
T ss_pred eEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEe
Confidence 3677999999999999999999999987532 2344558888888876551 2368999999999999
Q ss_pred ECCCCceEEE-------------------------------------eecCCCCeEEEEeccCccCCCcEEEEEeCCCeE
Q psy9598 546 NLQTLAPISV-------------------------------------LVGHQGIITGVNFCPLEVNGFNYLASTSTDGCI 588 (1915)
Q Consensus 546 Dl~tg~~~~~-------------------------------------l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI 588 (1915)
++..+..-.+ ..+....|.+|+.+| ++++|++|..-|+|
T Consensus 408 ~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp----~gqhLAsGDr~Gnl 483 (1080)
T KOG1408|consen 408 DLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSP----DGQHLASGDRGGNL 483 (1080)
T ss_pred ecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECC----CcceecccCccCce
Confidence 9975211100 001224689999999 55999999999999
Q ss_pred EEEecccCccccceeccCccccccccCCCCCceEEEEECC---CCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCC
Q psy9598 589 GFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSP---GGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDK 665 (1915)
Q Consensus 589 ~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fsp---dg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~ 665 (1915)
++|++...... ....+|...|.|+.|+. ..++||+++.|..|+|||+. .....+.++.+|...
T Consensus 484 rVy~Lq~l~~~------------~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~--rny~l~qtld~HSss 549 (1080)
T KOG1408|consen 484 RVYDLQELEYT------------CFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVK--RNYDLVQTLDGHSSS 549 (1080)
T ss_pred EEEEehhhhhh------------hheecccceeEEEeecCchhhhHhhhhccCCceEEEEecc--cccchhhhhcccccc
Confidence 99998765432 23346789999999986 35689999999999999994 344566788999999
Q ss_pred eeEEEEcCCC--CEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecC
Q psy9598 666 VDSIQWSHSH--LRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFN 743 (1915)
Q Consensus 666 V~sl~fspdg--~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~D 743 (1915)
|++|.|.-+| ..+++++.|..|.+--.+...-.... ...........+..++..|...++++++. |
T Consensus 550 ITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f-----------~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQ-D 617 (1080)
T KOG1408|consen 550 ITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLF-----------PRHTQTLSKTTLYDMAVDPTSKLVVTVCQ-D 617 (1080)
T ss_pred eeEEEEeecCCceEEEeccCchhhheehhccccCceec-----------cccccccccceEEEeeeCCCcceEEEEec-c
Confidence 9999999887 68899999988754322211100000 01112224567889999999999999999 9
Q ss_pred CeEEEEECCCCceEEEeeC---CCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEE
Q psy9598 744 FQIKIWDAFNGDLVQVLKG---HTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDG 820 (1915)
Q Consensus 744 g~I~vwD~~tg~~i~~l~g---H~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~v 820 (1915)
..|+|||+.+|+.+..|+| |.+....|...| .|.||+|.+.|.+|.++|+.++++ +.... +|...|+.+
T Consensus 618 rnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDP-SgiY~atScsdktl~~~Df~sgEc--vA~m~-----GHsE~VTG~ 689 (1080)
T KOG1408|consen 618 RNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDP-SGIYLATSCSDKTLCFVDFVSGEC--VAQMT-----GHSEAVTGV 689 (1080)
T ss_pred cceEEEeccccceeeeecccccCCCceEEEEECC-CccEEEEeecCCceEEEEeccchh--hhhhc-----Ccchheeee
Confidence 9999999999999999984 667788888999 999999999999999999999999 66554 566899999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEeCCC
Q psy9598 821 KWSPDGTTCALTDSYGHLLVYGLGG 845 (1915)
Q Consensus 821 afSpdg~~Lasg~~dG~I~Iwdl~s 845 (1915)
.|.+|-++|++.+.||.|.||.+..
T Consensus 690 kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 690 KFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred eecccchhheeecCCceEEEEECch
Confidence 9999999999999999999999875
|
|
| >KOG0308|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.5e-24 Score=253.16 Aligned_cols=284 Identities=16% Similarity=0.270 Sum_probs=230.5
Q ss_pred EEEEe-CCCCEEEEEeCCCcEEEEECCCCc------eEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEeccc
Q psy9598 523 DIAID-NRNILLAAGTVDKTIRIWNLQTLA------PISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKL 595 (1915)
Q Consensus 523 ~Lafs-pdg~~LaSgs~DgtIrVWDl~tg~------~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~ 595 (1915)
.+..+ |.+++|+|||.||.|++|++.... .+..+..|.+.|+.++.+. ++..|+++|.|.+|++|+...
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~----~~~tlIS~SsDtTVK~W~~~~ 104 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCG----NGKTLISASSDTTVKVWNAHK 104 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhc----CCCceEEecCCceEEEeeccc
Confidence 34444 456789999999999999986422 3678889999999999986 458999999999999999876
Q ss_pred CccccceeccCccccccccCCCCCceEEEEE-CCCCcEEEEEeCCCeEEEEEecCCC-------CCceeEEec-cCCCCe
Q psy9598 596 DIDISKTVFHEPVMFNERIRPGNAHILCSSF-SPGGLFLATGSGDHHVRVYKMDGVD-------SPLGILEVE-EHSDKV 666 (1915)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~f-spdg~~Lasgs~Dg~I~IwDl~~~~-------~~~~i~~l~-~h~~~V 666 (1915)
+. ..+...++.|..+|.|+++ .++..++|+||-|+.|.|||+.... .......+. |+...|
T Consensus 105 ~~----------~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~si 174 (735)
T KOG0308|consen 105 DN----------TFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSI 174 (735)
T ss_pred Cc----------chhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccce
Confidence 52 1223445678899999999 7888899999999999999996431 112222334 888999
Q ss_pred eEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeE
Q psy9598 667 DSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQI 746 (1915)
Q Consensus 667 ~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I 746 (1915)
++++..+.|..|++|+..+.+++||.++...+ ....+|...|.++..+.||+.++++++ ||+|
T Consensus 175 YSLA~N~t~t~ivsGgtek~lr~wDprt~~ki----------------mkLrGHTdNVr~ll~~dDGt~~ls~sS-DgtI 237 (735)
T KOG0308|consen 175 YSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKI----------------MKLRGHTDNVRVLLVNDDGTRLLSASS-DGTI 237 (735)
T ss_pred eeeecCCcceEEEecCcccceEEeccccccce----------------eeeeccccceEEEEEcCCCCeEeecCC-CceE
Confidence 99999999999999999999999999887632 234478899999999999999999999 9999
Q ss_pred EEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCC
Q psy9598 747 KIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDG 826 (1915)
Q Consensus 747 ~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg 826 (1915)
++||+....|++++..|...|+++..+| +-..+++|+.||.|..=|+.+... ...+. ....+|..+..+...
T Consensus 238 rlWdLgqQrCl~T~~vH~e~VWaL~~~~-sf~~vYsG~rd~~i~~Tdl~n~~~--~tlic-----k~daPv~~l~~~~~~ 309 (735)
T KOG0308|consen 238 RLWDLGQQRCLATYIVHKEGVWALQSSP-SFTHVYSGGRDGNIYRTDLRNPAK--STLIC-----KEDAPVLKLHLHEHD 309 (735)
T ss_pred EeeeccccceeeeEEeccCceEEEeeCC-CcceEEecCCCCcEEecccCCchh--heEee-----cCCCchhhhhhcccc
Confidence 9999999999999999999999999998 889999999999999999988533 22222 234567777777555
Q ss_pred CEEEEEeCCCeEEEEeCCC
Q psy9598 827 TTCALTDSYGHLLVYGLGG 845 (1915)
Q Consensus 827 ~~Lasg~~dG~I~Iwdl~s 845 (1915)
+-+-+++.|+.|.-|.+..
T Consensus 310 ~~~WvtTtds~I~rW~~~~ 328 (735)
T KOG0308|consen 310 NSVWVTTTDSSIKRWKLEP 328 (735)
T ss_pred CCceeeeccccceecCCcc
Confidence 5557778888999997654
|
|
| >KOG0310|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.4e-23 Score=242.74 Aligned_cols=282 Identities=21% Similarity=0.266 Sum_probs=229.9
Q ss_pred CCCEEEEEEeCCCCE-EEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccC
Q psy9598 518 SGEISDIAIDNRNIL-LAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLD 596 (1915)
Q Consensus 518 ~~~I~~Lafspdg~~-LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~ 596 (1915)
.+.|++|+|+|...+ +|+.+ .-.|.||+..+.....++......|.++.|.. ||.+|++|...|.|++||+.+.
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~----DG~LlaaGD~sG~V~vfD~k~r 100 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRS----DGRLLAAGDESGHVKVFDMKSR 100 (487)
T ss_pred cCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhhHHhhccceeEEEeec----CCeEEEccCCcCcEEEeccccH
Confidence 467999999995432 33333 45799999998888888888889999999997 5699999999999999996653
Q ss_pred ccccceeccCccccccccCCCCCceEEEEECCCC-cEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCC
Q psy9598 597 IDISKTVFHEPVMFNERIRPGNAHILCSSFSPGG-LFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSH 675 (1915)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg-~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg 675 (1915)
.. ...+.+|..+|..+.|+|.+ ..|++|+.|+.+++||+.+.. ....+.+|++.|.|.+|+|..
T Consensus 101 ~i------------LR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~---v~~~l~~htDYVR~g~~~~~~ 165 (487)
T KOG0310|consen 101 VI------------LRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY---VQAELSGHTDYVRCGDISPAN 165 (487)
T ss_pred HH------------HHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcE---EEEEecCCcceeEeeccccCC
Confidence 22 22345678999999999965 567788889999999995432 366899999999999999865
Q ss_pred C-EEEEEeCCCcEEEEEccCCc-eEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCC
Q psy9598 676 L-RFVSGSRDGTALIWYYKCSQ-WRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFN 753 (1915)
Q Consensus 676 ~-~L~sgs~DG~I~IWDl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~t 753 (1915)
. .++|||.||+|++||++... +.. ...|..+|-.+.+-|.|..|+++++ ..|+|||+.+
T Consensus 166 ~hivvtGsYDg~vrl~DtR~~~~~v~-----------------elnhg~pVe~vl~lpsgs~iasAgG--n~vkVWDl~~ 226 (487)
T KOG0310|consen 166 DHIVVTGSYDGKVRLWDTRSLTSRVV-----------------ELNHGCPVESVLALPSGSLIASAGG--NSVKVWDLTT 226 (487)
T ss_pred CeEEEecCCCceEEEEEeccCCceeE-----------------EecCCCceeeEEEcCCCCEEEEcCC--CeEEEEEecC
Confidence 4 88999999999999998763 222 3357889999999999999999884 7899999986
Q ss_pred C-ceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEE
Q psy9598 754 G-DLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALT 832 (1915)
Q Consensus 754 g-~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg 832 (1915)
| +++..+..|...|+|+++.. ++..|+|||-||.|+|||+.+.+. +..+. -.++|.+++.+|+++.++.|
T Consensus 227 G~qll~~~~~H~KtVTcL~l~s-~~~rLlS~sLD~~VKVfd~t~~Kv--v~s~~------~~~pvLsiavs~dd~t~viG 297 (487)
T KOG0310|consen 227 GGQLLTSMFNHNKTVTCLRLAS-DSTRLLSGSLDRHVKVFDTTNYKV--VHSWK------YPGPVLSIAVSPDDQTVVIG 297 (487)
T ss_pred CceehhhhhcccceEEEEEeec-CCceEeecccccceEEEEccceEE--EEeee------cccceeeEEecCCCceEEEe
Confidence 5 55555556999999999998 889999999999999999877666 44443 45899999999999999999
Q ss_pred eCCCeEEEEeCCCCc
Q psy9598 833 DSYGHLLVYGLGGFK 847 (1915)
Q Consensus 833 ~~dG~I~Iwdl~s~~ 847 (1915)
.++|.+.+-.....+
T Consensus 298 msnGlv~~rr~~~k~ 312 (487)
T KOG0310|consen 298 MSNGLVSIRRREVKK 312 (487)
T ss_pred cccceeeeehhhccc
Confidence 999999887554433
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.4e-22 Score=257.26 Aligned_cols=229 Identities=14% Similarity=0.225 Sum_probs=182.5
Q ss_pred cccCCCeEEEecccCCceeeeEEecCCCCcEEEEEEcCC-CCEEEEEECCCcEEEEECCCCc--------EEEEEeCCCC
Q psy9598 449 SGPLSRSLMISSHKYSNLRQHYVNLGHLSAVFCVLFDKL-GEVIVTGADDLLIKLWRARDGK--------LLATLRGCSG 519 (1915)
Q Consensus 449 tg~~d~~~~i~~~~~~~~~~~~~l~gH~~~V~~vafspd-g~~LaTGs~Dg~I~IWd~~tg~--------~~~~l~gH~~ 519 (1915)
+|+..+.+.+|.... ...+..+.||.+.|++|+|+|+ +.+||||+.||+|+|||+.++. ++..+.+|..
T Consensus 49 gGG~~gvI~L~~~~r--~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~ 126 (568)
T PTZ00420 49 GGGLIGAIRLENQMR--KPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKK 126 (568)
T ss_pred CCCceeEEEeeecCC--CceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCC
Confidence 366677888885433 3456788999999999999996 7999999999999999997642 3457889999
Q ss_pred CEEEEEEeCCCCE-EEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCcc
Q psy9598 520 EISDIAIDNRNIL-LAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDID 598 (1915)
Q Consensus 520 ~I~~Lafspdg~~-LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~ 598 (1915)
.|.+|+|+|++.. |++|+.|++|+|||+.++..+..+. |...|.+++|+|+ +.+|++++.|+.|+|||++++..
T Consensus 127 ~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~Slswspd----G~lLat~s~D~~IrIwD~Rsg~~ 201 (568)
T PTZ00420 127 KISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIK----GNLLSGTCVGKHMHIIDPRKQEI 201 (568)
T ss_pred cEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCC----CCEEEEEecCCEEEEEECCCCcE
Confidence 9999999998875 5789999999999999998887775 6678999999994 58999999999999999998865
Q ss_pred ccceeccCccccccccCCCCCc-----eEEEEECCCCcEEEEEeCCC----eEEEEEecCCCCCceeEEeccCCCCeeEE
Q psy9598 599 ISKTVFHEPVMFNERIRPGNAH-----ILCSSFSPGGLFLATGSGDH----HVRVYKMDGVDSPLGILEVEEHSDKVDSI 669 (1915)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~-----V~~l~fspdg~~Lasgs~Dg----~I~IwDl~~~~~~~~i~~l~~h~~~V~sl 669 (1915)
+..+.. |.+. +.+..|++++.+|++++.++ .|+|||++....+.....+..+.+.+...
T Consensus 202 i~tl~g------------H~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~ 269 (568)
T PTZ00420 202 ASSFHI------------HDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPH 269 (568)
T ss_pred EEEEec------------ccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEe
Confidence 443322 2222 33445678989999988774 79999997555555555555566666555
Q ss_pred EEcCCCCEEEEEeCCCcEEEEEccCCc
Q psy9598 670 QWSHSHLRFVSGSRDGTALIWYYKCSQ 696 (1915)
Q Consensus 670 ~fspdg~~L~sgs~DG~I~IWDl~~~~ 696 (1915)
...++|.+|++|+.|++|++|++..+.
T Consensus 270 ~D~~tg~l~lsGkGD~tIr~~e~~~~~ 296 (568)
T PTZ00420 270 YDESTGLIYLIGKGDGNCRYYQHSLGS 296 (568)
T ss_pred eeCCCCCEEEEEECCCeEEEEEccCCc
Confidence 556678999999999999999997664
|
|
| >KOG0973|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.2e-23 Score=263.91 Aligned_cols=282 Identities=21% Similarity=0.306 Sum_probs=221.1
Q ss_pred Ccccccc--CCCeEEEecccCC----------ceeeeEEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCC-----
Q psy9598 445 SREYSGP--LSRSLMISSHKYS----------NLRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARD----- 507 (1915)
Q Consensus 445 ~r~~tg~--~d~~~~i~~~~~~----------~~~~~~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~t----- 507 (1915)
.+.++|+ .|+...+|....- --++......|.++|+||.|++||.+||+||+|+.|.||....
T Consensus 26 ~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~ 105 (942)
T KOG0973|consen 26 VKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGT 105 (942)
T ss_pred eeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcc
Confidence 4556666 7777777753211 1234467789999999999999999999999999999998762
Q ss_pred -------------CcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccC
Q psy9598 508 -------------GKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVN 574 (1915)
Q Consensus 508 -------------g~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~ 574 (1915)
.+.+.+|.+|.+.|.+++|+|++.+||++|.|++|.||+..++..+.++.+|.+.|-.+.|.|.+
T Consensus 106 ~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~G-- 183 (942)
T KOG0973|consen 106 VFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIG-- 183 (942)
T ss_pred cccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeecccccccceEECCcc--
Confidence 13678899999999999999999999999999999999999999999999999999999999965
Q ss_pred CCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeC----CCeEEEEEecCC
Q psy9598 575 GFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSG----DHHVRVYKMDGV 650 (1915)
Q Consensus 575 d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~----Dg~I~IwDl~~~ 650 (1915)
++|++-+.|++|+||++..-.....+... . .-.+....+..++|||||.+|+++.. -.++.|.+-
T Consensus 184 --ky~ASqsdDrtikvwrt~dw~i~k~It~p--f----~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR--- 252 (942)
T KOG0973|consen 184 --KYFASQSDDRTLKVWRTSDWGIEKSITKP--F----EESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIER--- 252 (942)
T ss_pred --CeeeeecCCceEEEEEcccceeeEeeccc--h----hhCCCcceeeecccCCCcCeecchhhccCCcceeEEEec---
Confidence 99999999999999996653322222111 1 01133466889999999999998643 346777665
Q ss_pred CCCceeEEeccCCCCeeEEEEcCC-------------CC----EEEEEeCCCcEEEEEccCCceEEeeecccccCCCCcc
Q psy9598 651 DSPLGILEVEEHSDKVDSIQWSHS-------------HL----RFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKE 713 (1915)
Q Consensus 651 ~~~~~i~~l~~h~~~V~sl~fspd-------------g~----~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~ 713 (1915)
.....-..+-||..++.++.|+|. ++ .+++||.|++|.||.....+...
T Consensus 253 ~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~-------------- 318 (942)
T KOG0973|consen 253 GTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLF-------------- 318 (942)
T ss_pred CCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchh--------------
Confidence 344445678899999999999972 11 67899999999999775444221
Q ss_pred ccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCc
Q psy9598 714 TSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGD 755 (1915)
Q Consensus 714 ~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~ 755 (1915)
....-....|..++|+|||..|++++. ||+|.++.+...+
T Consensus 319 -vi~~lf~~SI~DmsWspdG~~LfacS~-DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 319 -VIHNLFNKSIVDMSWSPDGFSLFACSL-DGTVALIHFEEKE 358 (942)
T ss_pred -hhhhhhcCceeeeeEcCCCCeEEEEec-CCeEEEEEcchHH
Confidence 112234567999999999999999998 9999999886543
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.8e-22 Score=254.11 Aligned_cols=210 Identities=15% Similarity=0.191 Sum_probs=172.3
Q ss_pred EecCCCCcEEEEEEcC-CCCEEEEEECCCcEEEEECCCC-------cEEEEEeCCCCCEEEEEEeCCC-CEEEEEeCCCc
Q psy9598 471 VNLGHLSAVFCVLFDK-LGEVIVTGADDLLIKLWRARDG-------KLLATLRGCSGEISDIAIDNRN-ILLAAGTVDKT 541 (1915)
Q Consensus 471 ~l~gH~~~V~~vafsp-dg~~LaTGs~Dg~I~IWd~~tg-------~~~~~l~gH~~~I~~Lafspdg-~~LaSgs~Dgt 541 (1915)
.|.||.+.|++|+|+| ++.+||+|+.||+|+|||+.++ .++..+.+|...|.+|+|+|++ .+|++|+.|++
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dgt 149 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMV 149 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCE
Confidence 4789999999999999 8899999999999999999765 3577899999999999999985 69999999999
Q ss_pred EEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCC-c
Q psy9598 542 IRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNA-H 620 (1915)
Q Consensus 542 IrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 620 (1915)
|+|||+.++..+..+.+|...|.+++|+|+ +.+|++|+.||+|++||++++..+..+.. |.+ .
T Consensus 150 VrIWDl~tg~~~~~l~~h~~~V~sla~spd----G~lLatgs~Dg~IrIwD~rsg~~v~tl~~------------H~~~~ 213 (493)
T PTZ00421 150 VNVWDVERGKAVEVIKCHSDQITSLEWNLD----GSLLCTTSKDKKLNIIDPRDGTIVSSVEA------------HASAK 213 (493)
T ss_pred EEEEECCCCeEEEEEcCCCCceEEEEEECC----CCEEEEecCCCEEEEEECCCCcEEEEEec------------CCCCc
Confidence 999999999999999999999999999994 58999999999999999998764433322 222 3
Q ss_pred eEEEEECCCCcEEEEEe----CCCeEEEEEecCCCCCceeEEecc-CCCCeeEEEEcCCCCEEEEEe-CCCcEEEEEccC
Q psy9598 621 ILCSSFSPGGLFLATGS----GDHHVRVYKMDGVDSPLGILEVEE-HSDKVDSIQWSHSHLRFVSGS-RDGTALIWYYKC 694 (1915)
Q Consensus 621 V~~l~fspdg~~Lasgs----~Dg~I~IwDl~~~~~~~~i~~l~~-h~~~V~sl~fspdg~~L~sgs-~DG~I~IWDl~~ 694 (1915)
+..+.|.+++..|++++ .|+.|+|||++....+. ..... +...+....|++++.+|++|+ .||.|++||+..
T Consensus 214 ~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~--~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~ 291 (493)
T PTZ00421 214 SQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPY--STVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMN 291 (493)
T ss_pred ceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCce--eEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeC
Confidence 45677888877777654 47899999996543332 22222 334566677999999999887 599999999988
Q ss_pred CceE
Q psy9598 695 SQWR 698 (1915)
Q Consensus 695 ~~~~ 698 (1915)
+...
T Consensus 292 ~~~~ 295 (493)
T PTZ00421 292 ERLT 295 (493)
T ss_pred CceE
Confidence 7643
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2e-22 Score=255.95 Aligned_cols=246 Identities=14% Similarity=0.179 Sum_probs=188.0
Q ss_pred EECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCC-CCEEEEEeCCCcEEEEECCCCc--------eEEEeecCCCCeE
Q psy9598 494 GADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNR-NILLAAGTVDKTIRIWNLQTLA--------PISVLVGHQGIIT 564 (1915)
Q Consensus 494 Gs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspd-g~~LaSgs~DgtIrVWDl~tg~--------~~~~l~~h~~~V~ 564 (1915)
|+.+|.|+||++.....+..+.+|.+.|.+|+|+|+ +.+||||+.||+|+|||+.++. ++..+.+|...|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 677899999999888889999999999999999997 7899999999999999997642 3557889999999
Q ss_pred EEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEE
Q psy9598 565 GVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRV 644 (1915)
Q Consensus 565 sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~I 644 (1915)
+|+|+|.+ ..+|++|+.||+|+|||+.++.....+. +...|.+++|+++|.+|++++.|+.|+|
T Consensus 130 sVaf~P~g---~~iLaSgS~DgtIrIWDl~tg~~~~~i~-------------~~~~V~SlswspdG~lLat~s~D~~IrI 193 (568)
T PTZ00420 130 IIDWNPMN---YYIMCSSGFDSFVNIWDIENEKRAFQIN-------------MPKKLSSLKWNIKGNLLSGTCVGKHMHI 193 (568)
T ss_pred EEEECCCC---CeEEEEEeCCCeEEEEECCCCcEEEEEe-------------cCCcEEEEEECCCCCEEEEEecCCEEEE
Confidence 99999953 3467899999999999998875332221 2357999999999999999999999999
Q ss_pred EEecCCCCCceeEEeccCCCCeeEE-----EEcCCCCEEEEEeCCC----cEEEEEccCCc-eEEeeecccccCCCCccc
Q psy9598 645 YKMDGVDSPLGILEVEEHSDKVDSI-----QWSHSHLRFVSGSRDG----TALIWYYKCSQ-WRFIRLDMNTCLPHTKET 714 (1915)
Q Consensus 645 wDl~~~~~~~~i~~l~~h~~~V~sl-----~fspdg~~L~sgs~DG----~I~IWDl~~~~-~~~~~~~~~~~~~~~~~~ 714 (1915)
||++. ...+..+.+|.+.+.+. .|++++.+|++++.|+ .|+|||++... .+...
T Consensus 194 wD~Rs---g~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~------------- 257 (568)
T PTZ00420 194 IDPRK---QEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTM------------- 257 (568)
T ss_pred EECCC---CcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEE-------------
Confidence 99953 44566788898765443 3458888999988774 79999998532 22110
Q ss_pred cccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEee--CCCCCeEEEEEcc
Q psy9598 715 SDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLK--GHTNEVFVLESHP 774 (1915)
Q Consensus 715 ~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~--gH~~~V~sl~~sp 774 (1915)
......+.+......++|.++++|.. |+.|++|++..+.+ ..+. .+..++.+++|.|
T Consensus 258 -~ld~~~~~L~p~~D~~tg~l~lsGkG-D~tIr~~e~~~~~~-~~l~~~~s~~p~~g~~f~P 316 (568)
T PTZ00420 258 -SIDNASAPLIPHYDESTGLIYLIGKG-DGNCRYYQHSLGSI-RKVNEYKSCSPFRSFGFLP 316 (568)
T ss_pred -EecCCccceEEeeeCCCCCEEEEEEC-CCeEEEEEccCCcE-EeecccccCCCccceEEcc
Confidence 11112233333444555777777777 99999999987643 3332 2456778888888
|
|
| >cd05505 Bromo_WSTF_like Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like) | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.2e-25 Score=213.93 Aligned_cols=95 Identities=29% Similarity=0.500 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCccccCCCcCCHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhhcCCCCC
Q psy9598 119 KNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQNKRS 198 (1915)
Q Consensus 119 ~~~~~~il~~l~~~~~~~~F~~pvd~~~~pdY~~iIk~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~Lif~N~~~yN~~~~s 198 (1915)
.++|..||+.|++++.++||+.|||..++||||+||++||||+||++||+++.|.|+++|.+||+|||.||++||+++ |
T Consensus 2 ~~~c~~il~~l~~~~~s~~F~~pv~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~-s 80 (97)
T cd05505 2 LQKCEEILSKILKYRFSWPFREPVTADEAEDYKKVITNPMDLQTMQTKCSCGSYSSVQEFLDDMKLVFSNAEKYYENG-S 80 (97)
T ss_pred HHHHHHHHHHHHhCCCcccccCCCChhhcccHHHHcCCcCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCC-C
Confidence 367999999999999999999999999999999999999999999999999999999999999999999999999977 9
Q ss_pred HHHHHHHHHHHHHHHH
Q psy9598 199 KIYIMTTRLSEFAEEH 214 (1915)
Q Consensus 199 ~i~~~a~~l~~~f~~~ 214 (1915)
.|+.+|.+|+++|.++
T Consensus 81 ~i~~~a~~le~~f~~~ 96 (97)
T cd05505 81 YVLSCMRKTEQCCVNL 96 (97)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999999875
|
The Williams-Beuren syndrome deletion transcript 9 is a putative transcriptional regulator. WSTF was found to play a role in vitamin D-mediated transcription as part of two chromatin remodeling complexes, WINAC and WICH. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >cd05495 Bromo_cbp_like Bromodomain, cbp_like subfamily | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.3e-24 Score=217.44 Aligned_cols=104 Identities=38% Similarity=0.640 Sum_probs=99.0
Q ss_pred chhHHHHHHHHHHHHhcC-CCCCCCCCCCCCC--CCCCccccCCCcCCHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhh
Q psy9598 115 PFNWKNECREVLETLWVC-PDSEPFRKPVDKL--DHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRN 191 (1915)
Q Consensus 115 ~~~~~~~~~~il~~l~~~-~~~~~F~~pvd~~--~~pdY~~iIk~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~Lif~N~~~ 191 (1915)
+.+|++.|..+|++|+++ +.|+||++|||.. ++||||+||++||||+||++||.+|.|.++.+|.+||+|||.||+.
T Consensus 1 ~~~l~~~~~~il~~l~~~~~~s~~F~~PV~~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~ 80 (108)
T cd05495 1 PEELRQALMPTLEKLYKQDPESLPFRQPVDPKLLGIPDYFDIVKNPMDLSTIRRKLDTGQYQDPWQYVDDVWLMFDNAWL 80 (108)
T ss_pred CHHHHHHHHHHHHHHHHcCcccchhcCCCCccccCCCcHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 467999999999999999 9999999999954 8999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy9598 192 YNQNKRSKIYIMTTRLSEFAEEHLRRLT 219 (1915)
Q Consensus 192 yN~~~~s~i~~~a~~l~~~f~~~~~~~~ 219 (1915)
||+++ |.+|.+|.+|+++|++.++.++
T Consensus 81 yN~~~-s~i~~~a~~l~~~F~~~~~~~~ 107 (108)
T cd05495 81 YNRKT-SRVYKYCTKLAEVFEQEIDPVM 107 (108)
T ss_pred HCCCC-CHHHHHHHHHHHHHHHHHHHHh
Confidence 99976 9999999999999999998774
|
Cbp (CREB binding protein or CREBBP) is an acetyltransferase acting on histone, which gives a specific tag for transcriptional activation and also acetylates non-histone proteins. CREBBP binds specifically to phosphorylated CREB protein and augments the activity of phosphorylated CREB to activate transcription of cAMP-responsive genes. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >KOG2106|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.8e-22 Score=228.56 Aligned_cols=347 Identities=15% Similarity=0.263 Sum_probs=262.4
Q ss_pred cCCCeEEEecccCCceeeeE-EecCCC-CcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeC
Q psy9598 451 PLSRSLMISSHKYSNLRQHY-VNLGHL-SAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDN 528 (1915)
Q Consensus 451 ~~d~~~~i~~~~~~~~~~~~-~l~gH~-~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafsp 528 (1915)
+..+.+.+|+.....+.... .+.++. .-|.||+|.++|. ++||..+|.|.||+..+.+..+....|.+.|.+|+.-.
T Consensus 219 ~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr 297 (626)
T KOG2106|consen 219 CGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLR 297 (626)
T ss_pred eCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEec
Confidence 33456778877666554433 344433 5799999999986 68999999999999988888887779999999999999
Q ss_pred CCCEEEEEeCCCcEEEEECCC------------C----------------------------ceEEEeecCCCCeEEEEe
Q psy9598 529 RNILLAAGTVDKTIRIWNLQT------------L----------------------------APISVLVGHQGIITGVNF 568 (1915)
Q Consensus 529 dg~~LaSgs~DgtIrVWDl~t------------g----------------------------~~~~~l~~h~~~V~sl~f 568 (1915)
+|.+| ||+.|..|..||-.- | ....+..+|....+.++.
T Consensus 298 ~Gtll-SGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~ 376 (626)
T KOG2106|consen 298 DGTLL-SGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLAT 376 (626)
T ss_pred CccEe-ecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEc
Confidence 99755 599999999998320 0 001223578888999999
Q ss_pred ccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEec
Q psy9598 569 CPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMD 648 (1915)
Q Consensus 569 sp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~ 648 (1915)
+|+. ..|++++.|+.+++|+ ..+......+. .++.|+.|+|.| .||+|+..|...|.|..
T Consensus 377 hps~----~q~~T~gqdk~v~lW~--~~k~~wt~~~~-------------d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e 436 (626)
T KOG2106|consen 377 HPSK----NQLLTCGQDKHVRLWN--DHKLEWTKIIE-------------DPAECADFHPSG-VVAVGTATGRWFVLDTE 436 (626)
T ss_pred CCCh----hheeeccCcceEEEcc--CCceeEEEEec-------------CceeEeeccCcc-eEEEeeccceEEEEecc
Confidence 9955 8999999999999999 33333333333 668899999999 99999999999999984
Q ss_pred CCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEE
Q psy9598 649 GVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVA 728 (1915)
Q Consensus 649 ~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va 728 (1915)
+ .. +..+...+.+++++.|+|+|.+|+.|+.|+.|.||-+......+.... ..+...|+.+.
T Consensus 437 ~---~~-lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~--------------k~~gs~ithLD 498 (626)
T KOG2106|consen 437 T---QD-LVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVG--------------KCSGSPITHLD 498 (626)
T ss_pred c---ce-eEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEee--------------eecCceeEEee
Confidence 3 22 233333388999999999999999999999999998876554332211 11337899999
Q ss_pred ECCCCCEEEEEEecCCeEEEEECCCCceEEE--------------e----eCCCCCeEEEEEccCCCCEEEEEecCceEE
Q psy9598 729 WDASDRWVITAINFNFQIKIWDAFNGDLVQV--------------L----KGHTNEVFVLESHPFDSRVLLSAGHDGLII 790 (1915)
Q Consensus 729 ~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~--------------l----~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~ 790 (1915)
||+|+++|.+-+. |-.|-.|.......+.. | ..|...|..++-+. ...++++|...|.|+
T Consensus 499 wS~Ds~~~~~~S~-d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~-~~~~lA~gdd~g~v~ 576 (626)
T KOG2106|consen 499 WSSDSQFLVSNSG-DYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSH-CEKLLASGDDFGKVH 576 (626)
T ss_pred ecCCCceEEeccC-ceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhh-hhhhhhccccCceEE
Confidence 9999999999988 99999995432221111 1 13445566666666 788999999999999
Q ss_pred EEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEEeCCCeEEEEeC
Q psy9598 791 IWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGL 843 (1915)
Q Consensus 791 IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl 843 (1915)
||...-.+. ...++ ..+.|.+.|.+++|.-+..+|++.+.|..|..|.+
T Consensus 577 lf~yPc~s~--rA~~h--e~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 577 LFSYPCSSP--RAPSH--EYGGHSSHVTNVAFLCKDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred EEccccCCC--cccce--eeccccceeEEEEEeeCCceEEecCCCceEEEEEe
Confidence 998765444 22232 23456688999999998888888889999999986
|
|
| >KOG0294|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=8e-23 Score=226.29 Aligned_cols=248 Identities=17% Similarity=0.264 Sum_probs=203.3
Q ss_pred ceeeeEEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCC--EEEEEeCCCcE
Q psy9598 465 NLRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNI--LLAAGTVDKTI 542 (1915)
Q Consensus 465 ~~~~~~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~--~LaSgs~DgtI 542 (1915)
++...+.+..|.++|+|||++ |.|+|+||.|-+|+|||+.+...+..+..|.+.|++|.|.+.-. .|++|+.||.|
T Consensus 32 ~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i 109 (362)
T KOG0294|consen 32 TLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHI 109 (362)
T ss_pred eeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcE
Confidence 455567788999999999998 99999999999999999999999999999999999999998765 89999999999
Q ss_pred EEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceE
Q psy9598 543 RIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHIL 622 (1915)
Q Consensus 543 rVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~ 622 (1915)
.+|+.....++.++.+|.+.|+.|+.+|.+ .+.++.+.|+.+++||+-.+.......+. ....
T Consensus 110 ~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~----KLALsVg~D~~lr~WNLV~Gr~a~v~~L~-------------~~at 172 (362)
T KOG0294|consen 110 IIWRVGSWELLKSLKAHKGQVTDLSIHPSG----KLALSVGGDQVLRTWNLVRGRVAFVLNLK-------------NKAT 172 (362)
T ss_pred EEEEcCCeEEeeeecccccccceeEecCCC----ceEEEEcCCceeeeehhhcCccceeeccC-------------Ccce
Confidence 999999999999999999999999999954 89999999999999999988654433333 2334
Q ss_pred EEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeee
Q psy9598 623 CSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRL 702 (1915)
Q Consensus 623 ~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~ 702 (1915)
.+.|+|.|.+++.++.+ .|-||.++.... +..-.....+.|+.|. ++..|++|+.|+.|.+||.......
T Consensus 173 ~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v----~~~i~~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~---- 242 (362)
T KOG0294|consen 173 LVSWSPQGDHFVVSGRN-KIDIYQLDNASV----FREIENPKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPL---- 242 (362)
T ss_pred eeEEcCCCCEEEEEecc-EEEEEecccHhH----hhhhhccccceeeeec-CCceEEEecCCceEEEeccCCCccc----
Confidence 59999999988888776 578998843221 1111122456777765 5668999999999999998764422
Q ss_pred cccccCCCCccccccccccccEEEEEE--CCCCCEEEEEEecCCeEEEEECCCC
Q psy9598 703 DMNTCLPHTKETSDETNKKIKVTMVAW--DASDRWVITAINFNFQIKIWDAFNG 754 (1915)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~V~~va~--spdg~~L~t~s~~Dg~I~vwD~~tg 754 (1915)
.....|...|-.+.+ .|++.+|+++++ ||.|+|||+...
T Consensus 243 ------------~~~~AH~~RVK~i~~~~~~~~~~lvTaSS-DG~I~vWd~~~~ 283 (362)
T KOG0294|consen 243 ------------TEFLAHENRVKDIASYTNPEHEYLVTASS-DGFIKVWDIDME 283 (362)
T ss_pred ------------eeeecchhheeeeEEEecCCceEEEEecc-CceEEEEEcccc
Confidence 234567888888773 467889999999 999999999765
|
|
| >KOG1332|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.9e-23 Score=223.62 Aligned_cols=255 Identities=24% Similarity=0.339 Sum_probs=207.8
Q ss_pred EEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCC---cEEEEEeCCCCCEEEEEEeC--CCCEEEEEeCCCcEEE
Q psy9598 470 YVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDG---KLLATLRGCSGEISDIAIDN--RNILLAAGTVDKTIRI 544 (1915)
Q Consensus 470 ~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg---~~~~~l~gH~~~I~~Lafsp--dg~~LaSgs~DgtIrV 544 (1915)
..-.+|.+.|..+..+-.|.+|||++.|++|+||.+... .++.+|.||.++|..++|.. -|.+|||++.||.|.|
T Consensus 5 ~idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIi 84 (299)
T KOG1332|consen 5 TIDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVII 84 (299)
T ss_pred ehhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEE
Confidence 345689999999999999999999999999999998754 57889999999999999976 7999999999999999
Q ss_pred EECCCCc--eEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceE
Q psy9598 545 WNLQTLA--PISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHIL 622 (1915)
Q Consensus 545 WDl~tg~--~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~ 622 (1915)
|.-.+|+ .......|.+.|++|+|.|.. -+-+|+++|.||.|.|.+++........ .....|...|+
T Consensus 85 Wke~~g~w~k~~e~~~h~~SVNsV~waphe--ygl~LacasSDG~vsvl~~~~~g~w~t~---------ki~~aH~~Gvn 153 (299)
T KOG1332|consen 85 WKEENGRWTKAYEHAAHSASVNSVAWAPHE--YGLLLACASSDGKVSVLTYDSSGGWTTS---------KIVFAHEIGVN 153 (299)
T ss_pred EecCCCchhhhhhhhhhcccceeecccccc--cceEEEEeeCCCcEEEEEEcCCCCccch---------hhhhccccccc
Confidence 9988774 345667899999999999975 5789999999999999998765211111 12235677899
Q ss_pred EEEECCC---C-----------cEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCC----CEEEEEeCC
Q psy9598 623 CSSFSPG---G-----------LFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSH----LRFVSGSRD 684 (1915)
Q Consensus 623 ~l~fspd---g-----------~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg----~~L~sgs~D 684 (1915)
+++|.|. | ..|++|+.|..|+||+.+.. ....-..+.+|.+.|..++|.|.- .+|++||.|
T Consensus 154 sVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~-~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqD 232 (299)
T KOG1332|consen 154 SVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSD-SWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQD 232 (299)
T ss_pred eeeecCcCCCccccccCcccccceeeccCCccceeeeecCCc-chhhhhhhhhcchhhhhhhhccccCCCceeeEEecCC
Confidence 9999986 4 46999999999999999543 334444589999999999999974 479999999
Q ss_pred CcEEEEEccCC--ceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECC
Q psy9598 685 GTALIWYYKCS--QWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAF 752 (1915)
Q Consensus 685 G~I~IWDl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~ 752 (1915)
|+|.||..... .|.. ..+......+..+.||..|..|++++. |+.|.+|--.
T Consensus 233 g~viIwt~~~e~e~wk~---------------tll~~f~~~~w~vSWS~sGn~LaVs~G-dNkvtlwke~ 286 (299)
T KOG1332|consen 233 GTVIIWTKDEEYEPWKK---------------TLLEEFPDVVWRVSWSLSGNILAVSGG-DNKVTLWKEN 286 (299)
T ss_pred CcEEEEEecCccCcccc---------------cccccCCcceEEEEEeccccEEEEecC-CcEEEEEEeC
Confidence 99999965521 1211 112225567999999999999999999 9999999743
|
|
| >KOG1273|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-22 Score=224.10 Aligned_cols=296 Identities=15% Similarity=0.242 Sum_probs=223.3
Q ss_pred EEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeec
Q psy9598 479 VFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVG 558 (1915)
Q Consensus 479 V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~ 558 (1915)
..|+.|++.|.+||+|+.||.|.|||+.|...-..|.+|..+|+||+||++|+.|+|+|.|..|.+||+..|.+++.+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir- 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR- 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE-
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999998886
Q ss_pred CCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeC
Q psy9598 559 HQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSG 638 (1915)
Q Consensus 559 h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~ 638 (1915)
...+|+.+.|+|.. .+.++++-.+..-.+-++..+.. ..+...... ..+....+..|.+.|++|++|..
T Consensus 105 f~spv~~~q~hp~k---~n~~va~~~~~sp~vi~~s~~~h-~~Lp~d~d~-------dln~sas~~~fdr~g~yIitGts 173 (405)
T KOG1273|consen 105 FDSPVWGAQWHPRK---RNKCVATIMEESPVVIDFSDPKH-SVLPKDDDG-------DLNSSASHGVFDRRGKYIITGTS 173 (405)
T ss_pred ccCccceeeecccc---CCeEEEEEecCCcEEEEecCCce-eeccCCCcc-------ccccccccccccCCCCEEEEecC
Confidence 57899999999954 34444444443344444433210 000000000 01122334578999999999999
Q ss_pred CCeEEEEEecCCCCCceeEEeccCC-CCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCcccccc
Q psy9598 639 DHHVRVYKMDGVDSPLGILEVEEHS-DKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDE 717 (1915)
Q Consensus 639 Dg~I~IwDl~~~~~~~~i~~l~~h~-~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~ 717 (1915)
.|.+.+++.. +..++..+.-.. ..|..|.|+..|.+|+..+.|..|+.|+++.--.. . ....+........
T Consensus 174 KGkllv~~a~---t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~----~-r~~e~e~~~K~qD 245 (405)
T KOG1273|consen 174 KGKLLVYDAE---TLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDE----G-RDGEVEPEHKLQD 245 (405)
T ss_pred cceEEEEecc---hheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhccc----C-ccCCcChhHHHHH
Confidence 9999999984 345555554444 78899999999999999999999999988632100 0 0000000011111
Q ss_pred ccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCC-CCeEEEEEccCCCCEEEEEecCceEEEEECCC
Q psy9598 718 TNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHT-NEVFVLESHPFDSRVLLSAGHDGLIIIWDILS 796 (1915)
Q Consensus 718 ~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~-~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s 796 (1915)
......-.+++|+.+|.|+++++..-+.++||....|.++..|.|.. .....|.|+| -...|++- ..|+|+||....
T Consensus 246 vVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp-~rp~i~si-~sg~v~iw~~~~ 323 (405)
T KOG1273|consen 246 VVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHP-VRPIIASI-ASGVVYIWAVVQ 323 (405)
T ss_pred HHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeeccccc-ceeeeeec-cCCceEEEEeec
Confidence 22345567899999999999998878899999999999999999988 4678899999 55566665 789999998754
|
|
| >KOG2048|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.2e-21 Score=231.28 Aligned_cols=410 Identities=16% Similarity=0.155 Sum_probs=295.3
Q ss_pred cCccccccCCCeEEEecccCCceeeeEEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEE--EEeCCCCCE
Q psy9598 444 RSREYSGPLSRSLMISSHKYSNLRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLA--TLRGCSGEI 521 (1915)
Q Consensus 444 ~~r~~tg~~d~~~~i~~~~~~~~~~~~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~--~l~gH~~~I 521 (1915)
.+|..+.+.++++.-|+. ..++..+.+..-.++|++++.+|.+..++.|+.||.+..++...+.+.. .|....+.|
T Consensus 80 ~~RLFS~g~sg~i~EwDl--~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRv 157 (691)
T KOG2048|consen 80 GGRLFSSGLSGSITEWDL--HTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRV 157 (691)
T ss_pred CCeEEeecCCceEEEEec--ccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceE
Confidence 688899999999988854 5566777888888999999999999999999999988889988887654 344456899
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEee--------cCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEec
Q psy9598 522 SDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLV--------GHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKY 593 (1915)
Q Consensus 522 ~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~--------~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl 593 (1915)
.+|+|++++..||+|+.||.|++||+.++..++... +...-|++|.|..+ ..|++|..-|+|++||.
T Consensus 158 Lslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-----~tI~sgDS~G~V~FWd~ 232 (691)
T KOG2048|consen 158 LSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-----STIASGDSAGTVTFWDS 232 (691)
T ss_pred EEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-----CcEEEecCCceEEEEcc
Confidence 999999999999999999999999999998877322 13345888888753 68999999999999999
Q ss_pred ccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCC-CceeEEeccCCCCeeEEEEc
Q psy9598 594 KLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDS-PLGILEVEEHSDKVDSIQWS 672 (1915)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~-~~~i~~l~~h~~~V~sl~fs 672 (1915)
..+..+.... .|.+.|.|++.+++++.++++|.|+.|..|...+... .........|...|.+++..
T Consensus 233 ~~gTLiqS~~------------~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~ 300 (691)
T KOG2048|consen 233 IFGTLIQSHS------------CHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVI 300 (691)
T ss_pred cCcchhhhhh------------hhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeee
Confidence 8886544433 4578899999999999999999999999998855433 22333456788999999988
Q ss_pred CCCCEEEEEeCCCcEEEEEccCCceE----------------------Eeee-c-------ccccC-----CCCcccccc
Q psy9598 673 HSHLRFVSGSRDGTALIWYYKCSQWR----------------------FIRL-D-------MNTCL-----PHTKETSDE 717 (1915)
Q Consensus 673 pdg~~L~sgs~DG~I~IWDl~~~~~~----------------------~~~~-~-------~~~~~-----~~~~~~~~~ 717 (1915)
++ .|++|+.|+++.+--....... .... . +.... .........
T Consensus 301 ~~--~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~ 378 (691)
T KOG2048|consen 301 EN--ALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLF 378 (691)
T ss_pred cc--eEEecceeeEEEEccccccCchhhhccccccccceeecCccceEEEEeccccccceeccCcccccccChhhheeee
Confidence 76 8999999998887654431100 0000 0 00000 000011112
Q ss_pred ccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEee-----CCCCCeEEEEEccCCCCEEEEEe-cCceEEE
Q psy9598 718 TNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLK-----GHTNEVFVLESHPFDSRVLLSAG-HDGLIII 791 (1915)
Q Consensus 718 ~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~-----gH~~~V~sl~~sp~dg~~LaSgs-~DG~I~I 791 (1915)
......|.|.+.||+|++|+.+.- ..++||.+.....+.... .-.-.+..+.|+- +++.++.++ .++.+.+
T Consensus 379 ~k~~~nIs~~aiSPdg~~Ia~st~--~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~fti-d~~k~~~~s~~~~~le~ 455 (691)
T KOG2048|consen 379 TKEKENISCAAISPDGNLIAISTV--SRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTI-DKNKLFLVSKNIFSLEE 455 (691)
T ss_pred cCCccceeeeccCCCCCEEEEeec--cceEEEEeccCcceeEEEeccchhhhccceeeEEEe-cCceEEEEecccceeEE
Confidence 233466899999999999998874 567888776533333222 1223466777877 666666666 7888888
Q ss_pred EECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcccccC------CCceeec-CCCCe
Q psy9598 792 WDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGGFKRPQNI------PRELFFH-TDYRT 864 (1915)
Q Consensus 792 Wdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl~s~~~~~~l------~~~~~F~-~d~~~ 864 (1915)
+++.+.....+..+. .......|..++.|++|++||+.+..|.|.+|++.+.+..... ...+.|+ .+...
T Consensus 456 ~el~~ps~kel~~~~---~~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~rln~~vTa~~~~~~~~~~ 532 (691)
T KOG2048|consen 456 FELETPSFKELKSIQ---SQAKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKVRLNIDVTAAAFSPFVRNR 532 (691)
T ss_pred EEecCcchhhhhccc---cccCCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecchhccCcceeeeeccccccCc
Confidence 888776553233332 2234578999999999999999999999999999987643332 1256777 44444
Q ss_pred ee-ecCCCccceeeccc
Q psy9598 865 LN-RPNGLFEPTYDEVT 880 (1915)
Q Consensus 865 Lv-~~~~~~~~v~D~~t 880 (1915)
|+ ..+++-+--+|+..
T Consensus 533 lvvats~nQv~efdi~~ 549 (691)
T KOG2048|consen 533 LVVATSNNQVFEFDIEA 549 (691)
T ss_pred EEEEecCCeEEEEecch
Confidence 44 34444434677743
|
|
| >KOG0301|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.8e-22 Score=243.01 Aligned_cols=285 Identities=19% Similarity=0.313 Sum_probs=233.2
Q ss_pred CCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCce--EEEeecCCCCeEE-EEeccCccCCCcEEEEEe
Q psy9598 507 DGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAP--ISVLVGHQGIITG-VNFCPLEVNGFNYLASTS 583 (1915)
Q Consensus 507 tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~--~~~l~~h~~~V~s-l~fsp~~~~d~~~L~sgs 583 (1915)
..++.+.+.||...|..+++.+. ..++++|.||+++||+-..... .+.+.+|.+.|.+ ++|.+. ++..|++|+
T Consensus 3 ~Y~ls~~l~gH~~DVr~v~~~~~-~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~---~~~~l~~g~ 78 (745)
T KOG0301|consen 3 QYKLSHELEGHKSDVRAVAVTDG-VCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAES---DKGRLVVGG 78 (745)
T ss_pred cceeEEEeccCccchheeEecCC-eEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccc---cCcceEeec
Confidence 34677889999999998887655 4899999999999999865543 3567788888887 888872 556799999
Q ss_pred CCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCC
Q psy9598 584 TDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHS 663 (1915)
Q Consensus 584 ~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~ 663 (1915)
.|++|.+|...+...+. .+.+|...|+|++...++. |++|+.|.++++|-.. .+...+.+|.
T Consensus 79 ~D~~i~v~~~~~~~P~~------------~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~-----~l~~~l~gH~ 140 (745)
T KOG0301|consen 79 MDTTIIVFKLSQAEPLY------------TLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIG-----ELVYSLQGHT 140 (745)
T ss_pred ccceEEEEecCCCCchh------------hhhccccceeeeecCCcCc-eEecccccceEEecch-----hhhcccCCcc
Confidence 99999999887764332 3446789999999888887 9999999999999873 3445589999
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecC
Q psy9598 664 DKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFN 743 (1915)
Q Consensus 664 ~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~D 743 (1915)
..|+++++-|.+ .++|||.|.+|++|.-.+ ......+|...|..+++-+++.+ +++++ |
T Consensus 141 asVWAv~~l~e~-~~vTgsaDKtIklWk~~~------------------~l~tf~gHtD~VRgL~vl~~~~f-lScsN-D 199 (745)
T KOG0301|consen 141 ASVWAVASLPEN-TYVTGSADKTIKLWKGGT------------------LLKTFSGHTDCVRGLAVLDDSHF-LSCSN-D 199 (745)
T ss_pred hheeeeeecCCC-cEEeccCcceeeeccCCc------------------hhhhhccchhheeeeEEecCCCe-EeecC-C
Confidence 999999999888 899999999999995421 22345679999999999887655 55666 9
Q ss_pred CeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEc
Q psy9598 744 FQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWS 823 (1915)
Q Consensus 744 g~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafS 823 (1915)
|.|++|++ +|.++..+.||++.|+++.... ++..++|+|.|++++||+.. .+ .+.+. .....|+++.+-
T Consensus 200 g~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~-~~~~Ivs~gEDrtlriW~~~--e~--~q~I~-----lPttsiWsa~~L 268 (745)
T KOG0301|consen 200 GSIRLWDL-DGEVLLEMHGHTNFVYSISMAL-SDGLIVSTGEDRTLRIWKKD--EC--VQVIT-----LPTTSIWSAKVL 268 (745)
T ss_pred ceEEEEec-cCceeeeeeccceEEEEEEecC-CCCeEEEecCCceEEEeecC--ce--EEEEe-----cCccceEEEEEe
Confidence 99999999 8999999999999999999666 78899999999999999987 44 44433 223479999988
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCC
Q psy9598 824 PDGTTCALTDSYGHLLVYGLGGF 846 (1915)
Q Consensus 824 pdg~~Lasg~~dG~I~Iwdl~s~ 846 (1915)
++|. |++|++||.|+||.....
T Consensus 269 ~NgD-Ivvg~SDG~VrVfT~~k~ 290 (745)
T KOG0301|consen 269 LNGD-IVVGGSDGRVRVFTVDKD 290 (745)
T ss_pred eCCC-EEEeccCceEEEEEeccc
Confidence 8877 788999999999987743
|
|
| >KOG0300|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.9e-23 Score=225.20 Aligned_cols=321 Identities=17% Similarity=0.240 Sum_probs=250.7
Q ss_pred EEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEecc
Q psy9598 491 IVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCP 570 (1915)
Q Consensus 491 LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp 570 (1915)
|++.-.+++++ ..++..|.||...|..++.......+.+++.|.+.+||.+++|.|+..+.||.+.|++|.|++
T Consensus 127 ivssFk~~t~~------~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~ 200 (481)
T KOG0300|consen 127 IVSSFKDGTVK------FRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHN 200 (481)
T ss_pred heeeecCCcee------EeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEecc
Confidence 44444555532 245677899999999999988888999999999999999999999999999999999999999
Q ss_pred CccCCCcEEEEEeCCCeEEEEecccCccccc----e------------------------eccCccccccccCCCCCceE
Q psy9598 571 LEVNGFNYLASTSTDGCIGFWKYKLDIDISK----T------------------------VFHEPVMFNERIRPGNAHIL 622 (1915)
Q Consensus 571 ~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~----~------------------------~~~~~~~~~~~~~~~~~~V~ 622 (1915)
. +.++++++.|++..||...-.-.+.. . ..+..-.....+.+|.+.|.
T Consensus 201 s----~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~ 276 (481)
T KOG0300|consen 201 S----GLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVS 276 (481)
T ss_pred c----cceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceE
Confidence 5 48999999999999997321100000 0 00000111234567889999
Q ss_pred EEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeee
Q psy9598 623 CSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRL 702 (1915)
Q Consensus 623 ~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~ 702 (1915)
|+.|...|..+++++.|.+..+||+ .....+..+.||....+.++-+|..+++++++.|.+.++||++..-
T Consensus 277 a~dWL~gg~Q~vTaSWDRTAnlwDV---Etge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI------ 347 (481)
T KOG0300|consen 277 ACDWLAGGQQMVTASWDRTANLWDV---ETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAI------ 347 (481)
T ss_pred ehhhhcCcceeeeeeccccceeeee---ccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhc------
Confidence 9999999999999999999999999 5566778899999999999999999999999999999999998322
Q ss_pred cccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCC-ceEEEeeCCCCCeEEEEEccCCCCEEE
Q psy9598 703 DMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNG-DLVQVLKGHTNEVFVLESHPFDSRVLL 781 (1915)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg-~~i~~l~gH~~~V~sl~~sp~dg~~La 781 (1915)
.....+.+|...|+++.|..+.+ +++++. |.+|+|||+++. .++.++. -.++++.++++- .+.+|+
T Consensus 348 ---------~sV~VFQGHtdtVTS~vF~~dd~-vVSgSD-DrTvKvWdLrNMRsplATIR-tdS~~NRvavs~-g~~iIA 414 (481)
T KOG0300|consen 348 ---------QSVAVFQGHTDTVTSVVFNTDDR-VVSGSD-DRTVKVWDLRNMRSPLATIR-TDSPANRVAVSK-GHPIIA 414 (481)
T ss_pred ---------ceeeeecccccceeEEEEecCCc-eeecCC-CceEEEeeeccccCcceeee-cCCccceeEeec-CCceEE
Confidence 12234567889999999987664 566666 999999999875 4566665 456789999987 667888
Q ss_pred EEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCC--CEEEEEeCCCeEEEEeCCCC
Q psy9598 782 SAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDG--TTCALTDSYGHLLVYGLGGF 846 (1915)
Q Consensus 782 Sgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg--~~Lasg~~dG~I~Iwdl~s~ 846 (1915)
.--.+..|+|||+..... ..+.......|...|.|++|..+. .-|++|+-|..+.-|.+...
T Consensus 415 iPhDNRqvRlfDlnG~Rl---aRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 415 IPHDNRQVRLFDLNGNRL---ARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred eccCCceEEEEecCCCcc---ccCCcccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 888889999999976554 333333334566789999997653 45788889999999988753
|
|
| >KOG1063|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-21 Score=235.82 Aligned_cols=404 Identities=19% Similarity=0.242 Sum_probs=290.7
Q ss_pred ccccccCCCeEEEecccCCceeeeEEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCC-----------------
Q psy9598 446 REYSGPLSRSLMISSHKYSNLRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDG----------------- 508 (1915)
Q Consensus 446 r~~tg~~d~~~~i~~~~~~~~~~~~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg----------------- 508 (1915)
-.++|+.|+.+.+|...+..+....++.||...+.|+.-- -..+.+.+.|++|.+|+....
T Consensus 71 ~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~~~~~cv~a~--~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ip 148 (764)
T KOG1063|consen 71 EMVSGDSDGRVILWKLRDEYLIKIYTIQGHCKECVCVVAR--SSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIP 148 (764)
T ss_pred eEEEccCCCcEEEEEEeehheEEEEeecCcceeEEEEEee--eeEEEeeccCceEEEeecCCCceeeehheehhhhhHhh
Confidence 4578999999999999888899999999987776666432 223333367888888886211
Q ss_pred ---------------------------------cEEEEEeCCCCCEEEEEEeCCC---CEEEEEeCCCcEEEEECCCCc-
Q psy9598 509 ---------------------------------KLLATLRGCSGEISDIAIDNRN---ILLAAGTVDKTIRIWNLQTLA- 551 (1915)
Q Consensus 509 ---------------------------------~~~~~l~gH~~~I~~Lafspdg---~~LaSgs~DgtIrVWDl~tg~- 551 (1915)
..+..+.||...|.+|+|..-+ .+|||||.|..||||.+.-+.
T Consensus 149 LcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~ 228 (764)
T KOG1063|consen 149 LCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDD 228 (764)
T ss_pred HHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCC
Confidence 2345678999999999997754 489999999999999874211
Q ss_pred --------------------eE----------EEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccc
Q psy9598 552 --------------------PI----------SVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISK 601 (1915)
Q Consensus 552 --------------------~~----------~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~ 601 (1915)
.. ..+.||.+.|.++.|+|.. ..|+++|.|.++.+|.-.....+..
T Consensus 229 ~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~----~~LLSASaDksmiiW~pd~~tGiWv 304 (764)
T KOG1063|consen 229 EDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEG----LDLLSASADKSMIIWKPDENTGIWV 304 (764)
T ss_pred ccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccch----hhheecccCcceEEEecCCccceEE
Confidence 11 1234899999999999954 7899999999999998776544433
Q ss_pred eeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEE
Q psy9598 602 TVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSG 681 (1915)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sg 681 (1915)
..... ....+..+..+.+.|+|+++.+++-+..|..++|.............+.||...|..|+|+|.|.+|++.
T Consensus 305 ~~vRl-----Ge~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsv 379 (764)
T KOG1063|consen 305 DVVRL-----GEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSV 379 (764)
T ss_pred EEEEe-----ecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEe
Confidence 32220 0111233567899999999999999999999999843333344455678999999999999999999999
Q ss_pred eCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECC---------
Q psy9598 682 SRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAF--------- 752 (1915)
Q Consensus 682 s~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~--------- 752 (1915)
|.|.+-|||-.-..+.. .........|...++|++|-+....+++|.. ...+++|+..
T Consensus 380 s~DQTTRlFa~wg~q~~------------wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAd-EKVlRvF~aPk~fv~~l~~ 446 (764)
T KOG1063|consen 380 SLDQTTRLFARWGRQQE------------WHEIARPQIHGYDLTCLSFVNEDLQFVSGAD-EKVLRVFEAPKSFVKSLMA 446 (764)
T ss_pred ccccceeeecccccccc------------eeeecccccccccceeeehccCCceeeeccc-ceeeeeecCcHHHHHHHHH
Confidence 99999999854311100 0111122347778888888875444444444 7778888641
Q ss_pred ----------------------------------CCc---------------------------------eEEEeeCCCC
Q psy9598 753 ----------------------------------NGD---------------------------------LVQVLKGHTN 765 (1915)
Q Consensus 753 ----------------------------------tg~---------------------------------~i~~l~gH~~ 765 (1915)
+|. .++.+.||..
T Consensus 447 i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGy 526 (764)
T KOG1063|consen 447 ICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGY 526 (764)
T ss_pred HhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCce
Confidence 000 0123568999
Q ss_pred CeEEEEEccCCCCEEEEEecC-----ceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEEeCCCeEEE
Q psy9598 766 EVFVLESHPFDSRVLLSAGHD-----GLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLV 840 (1915)
Q Consensus 766 ~V~sl~~sp~dg~~LaSgs~D-----G~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~dG~I~I 840 (1915)
.|++++.+| +++++||++.. ..|+||+..+-.. ...+. .|.-.|+.++|||||++|++.+.|.++.+
T Consensus 527 Ev~~l~~s~-~gnliASaCKS~~~ehAvI~lw~t~~W~~--~~~L~-----~HsLTVT~l~FSpdg~~LLsvsRDRt~sl 598 (764)
T KOG1063|consen 527 EVYALAISP-TGNLIASACKSSLKEHAVIRLWNTANWLQ--VQELE-----GHSLTVTRLAFSPDGRYLLSVSRDRTVSL 598 (764)
T ss_pred eEEEEEecC-CCCEEeehhhhCCccceEEEEEeccchhh--hheec-----ccceEEEEEEECCCCcEEEEeecCceEEe
Confidence 999999999 99999999754 4699999987666 44343 45668999999999999999999999999
Q ss_pred EeCCCCc----------ccccCCCceeecCCCCeeeecC-CCccceeecccC
Q psy9598 841 YGLGGFK----------RPQNIPRELFFHTDYRTLNRPN-GLFEPTYDEVTN 881 (1915)
Q Consensus 841 wdl~s~~----------~~~~l~~~~~F~~d~~~Lv~~~-~~~~~v~D~~t~ 881 (1915)
|...... ....|.-...|++|...++..+ .-.+.||-+...
T Consensus 599 ~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 599 YEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDL 650 (764)
T ss_pred eeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCc
Confidence 9876432 2222333567788888766443 344668876543
|
|
| >cd05497 Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily, repeat I | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.7e-24 Score=212.83 Aligned_cols=101 Identities=33% Similarity=0.596 Sum_probs=94.3
Q ss_pred hHHHHHHHHHHHHhcCCCCCCCCCCCCC--CCCCCccccCCCcCCHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhhcC
Q psy9598 117 NWKNECREVLETLWVCPDSEPFRKPVDK--LDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQ 194 (1915)
Q Consensus 117 ~~~~~~~~il~~l~~~~~~~~F~~pvd~--~~~pdY~~iIk~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~Lif~N~~~yN~ 194 (1915)
.++-.++.||..|++++.|+||++|||. .++||||+|||+||||+||++||+++.|.++++|.+||+|||.||+.||+
T Consensus 5 q~~~~~~~il~~l~~~~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~yN~ 84 (107)
T cd05497 5 QLQYLLKVVLKALWKHKFAWPFQQPVDAVKLNLPDYHKIIKTPMDLGTIKKRLENNYYWSASECIQDFNTMFTNCYIYNK 84 (107)
T ss_pred HHHHHHHHHHHHHHhCCcCccccCCCCcccccCCcHHHHHcCcccHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 4555567899999999999999999994 48999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHH
Q psy9598 195 NKRSKIYIMTTRLSEFAEEHLRRL 218 (1915)
Q Consensus 195 ~~~s~i~~~a~~l~~~f~~~~~~~ 218 (1915)
++ |.||.+|..|+++|+++++.+
T Consensus 85 ~~-s~i~~~A~~l~~~f~~~l~~~ 107 (107)
T cd05497 85 PG-DDVVLMAQTLEKLFLQKLAQM 107 (107)
T ss_pred CC-CHHHHHHHHHHHHHHHHHHcC
Confidence 77 999999999999999998753
|
Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >KOG1036|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.8e-22 Score=221.33 Aligned_cols=282 Identities=17% Similarity=0.241 Sum_probs=223.6
Q ss_pred CCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEE
Q psy9598 476 LSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISV 555 (1915)
Q Consensus 476 ~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~ 555 (1915)
...|.+|.|+|.+..|++++.||++++|++....+...+. |.++|++++|.++ ..+++|+.||.|+++|+.++.. ..
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~~-~~ 89 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTGNE-DQ 89 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccCC-ceEEEeccCceEEEEEecCCcc-ee
Confidence 5789999999999999999999999999998886666665 8999999999874 5789999999999999998764 44
Q ss_pred eecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEE
Q psy9598 556 LVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLAT 635 (1915)
Q Consensus 556 l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Las 635 (1915)
+..|...|.||.+++.. ..+++||+|++|++||.+.......... ...|+|+..+ |+.|++
T Consensus 90 igth~~~i~ci~~~~~~----~~vIsgsWD~~ik~wD~R~~~~~~~~d~-------------~kkVy~~~v~--g~~LvV 150 (323)
T KOG1036|consen 90 IGTHDEGIRCIEYSYEV----GCVISGSWDKTIKFWDPRNKVVVGTFDQ-------------GKKVYCMDVS--GNRLVV 150 (323)
T ss_pred eccCCCceEEEEeeccC----CeEEEcccCccEEEEecccccccccccc-------------CceEEEEecc--CCEEEE
Confidence 56799999999999843 8999999999999999987433222221 2478887764 668999
Q ss_pred EeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCcccc
Q psy9598 636 GSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETS 715 (1915)
Q Consensus 636 gs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~ 715 (1915)
|+.+..|.+||++....+... .-....-.+.||++.|++.-++++|.||.|.+=.+......... .-....+....
T Consensus 151 g~~~r~v~iyDLRn~~~~~q~-reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~sk---kyaFkCHr~~~ 226 (323)
T KOG1036|consen 151 GTSDRKVLIYDLRNLDEPFQR-RESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSK---KYAFKCHRLSE 226 (323)
T ss_pred eecCceEEEEEcccccchhhh-ccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhh---ceeEEeeeccc
Confidence 999999999999766554422 22344567899999999999999999999988766654211000 00011112222
Q ss_pred ccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEEec
Q psy9598 716 DETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGH 785 (1915)
Q Consensus 716 ~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~ 785 (1915)
.......+|++++|+|-...+++|++ ||.|.+||+.+.+.+..|..-...|.+++|+. +|..||+|+.
T Consensus 227 ~~~~~~yPVNai~Fhp~~~tfaTgGs-DG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~-dG~~LAia~s 294 (323)
T KOG1036|consen 227 KDTEIIYPVNAIAFHPIHGTFATGGS-DGIVNIWDLFNRKRLKQLAKYETSISSLSFSM-DGSLLAIASS 294 (323)
T ss_pred CCceEEEEeceeEeccccceEEecCC-CceEEEccCcchhhhhhccCCCCceEEEEecc-CCCeEEEEec
Confidence 33345578999999999999999999 99999999999999999988878899999998 9999999874
|
|
| >cd05510 Bromo_SPT7_like Bromodomain; SPT7_like subfamily | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.8e-24 Score=213.15 Aligned_cols=106 Identities=28% Similarity=0.442 Sum_probs=100.1
Q ss_pred CchhHHHHHHHHHHHHhcC-CCCCCCCCCCCCCCCCCccccCCCcCCHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhh
Q psy9598 114 RPFNWKNECREVLETLWVC-PDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNY 192 (1915)
Q Consensus 114 ~~~~~~~~~~~il~~l~~~-~~~~~F~~pvd~~~~pdY~~iIk~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~Lif~N~~~y 192 (1915)
...++.+.|..||+.|+++ +.++||+.||++.++||||++|++||||+||++||+++.|.|+++|.+||+|||.||+.|
T Consensus 4 ~~~~~~~~~~~il~~l~~~~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~Li~~N~~~y 83 (112)
T cd05510 4 GQEEFYESLDKVLNELKTYTEHSTPFLTKVSKREAPDYYDIIKKPMDLGTMLKKLKNLQYKSKAEFVDDLNLIWKNCLLY 83 (112)
T ss_pred cHHHHHHHHHHHHHHHHhcCccccchhcCCChhhcCCHHHHhcCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 3468899999999999999 899999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy9598 193 NQNKRSKIYIMTTRLSEFAEEHLRRLT 219 (1915)
Q Consensus 193 N~~~~s~i~~~a~~l~~~f~~~~~~~~ 219 (1915)
|+++.+.++++|..|++.|++++..+.
T Consensus 84 N~~~s~~~~~~A~~l~~~~~~~~~~~~ 110 (112)
T cd05510 84 NSDPSHPLRRHANFMKKKAEHLLKLIP 110 (112)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence 997756889999999999999998763
|
SPT7 is a yeast protein that functions as a component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA, and SLIK. SAGA is involved in the RNA polymerase II-dependent transcriptional regulation of about 10% of all yeast genes. The SPT7 bromodomain has been shown to weakly interact with acetylated histone H3, but not H4. The human representative of this subfamily is cat eye syndrome critical region protein 2 (CECR2). Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >KOG0294|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.3e-22 Score=219.22 Aligned_cols=269 Identities=22% Similarity=0.319 Sum_probs=208.8
Q ss_pred EEEEECCCcEEEEECC------------CCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeec
Q psy9598 491 IVTGADDLLIKLWRAR------------DGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVG 558 (1915)
Q Consensus 491 LaTGs~Dg~I~IWd~~------------tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~ 558 (1915)
|++|+....|.-+++. +..++..+..|.++|++|+++ +.++||||.|-+|+|||+.+...+..+..
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~ 81 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLS 81 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceec
Confidence 5556665555555442 123456778999999999985 77999999999999999999999999999
Q ss_pred CCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeC
Q psy9598 559 HQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSG 638 (1915)
Q Consensus 559 h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~ 638 (1915)
|.+.|+++.|.+.. ....|++|+.||.|.+|+...-..+ ..+.+|.+.|+.++++|.|++.++.+.
T Consensus 82 HagsitaL~F~~~~--S~shLlS~sdDG~i~iw~~~~W~~~------------~slK~H~~~Vt~lsiHPS~KLALsVg~ 147 (362)
T KOG0294|consen 82 HAGSITALKFYPPL--SKSHLLSGSDDGHIIIWRVGSWELL------------KSLKAHKGQVTDLSIHPSGKLALSVGG 147 (362)
T ss_pred cccceEEEEecCCc--chhheeeecCCCcEEEEEcCCeEEe------------eeecccccccceeEecCCCceEEEEcC
Confidence 99999999999854 3358999999999999998765432 234567788999999999999999999
Q ss_pred CCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccc
Q psy9598 639 DHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDET 718 (1915)
Q Consensus 639 Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~ 718 (1915)
|+.+++|++-.+... .+..+ ...-+.|.|+|.|.+|+.++.++ |-||.+.+..... ..
T Consensus 148 D~~lr~WNLV~Gr~a-~v~~L---~~~at~v~w~~~Gd~F~v~~~~~-i~i~q~d~A~v~~-----------------~i 205 (362)
T KOG0294|consen 148 DQVLRTWNLVRGRVA-FVLNL---KNKATLVSWSPQGDHFVVSGRNK-IDIYQLDNASVFR-----------------EI 205 (362)
T ss_pred CceeeeehhhcCccc-eeecc---CCcceeeEEcCCCCEEEEEeccE-EEEEecccHhHhh-----------------hh
Confidence 999999999443322 22222 22234489999999999988764 7788776544211 11
Q ss_pred cccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCCCeEEEEEc-cCCCCEEEEEecCceEEEEECCCC
Q psy9598 719 NKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESH-PFDSRVLLSAGHDGLIIIWDILSS 797 (1915)
Q Consensus 719 ~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~s-p~dg~~LaSgs~DG~I~IWdl~s~ 797 (1915)
.....+.|+.|. ++..|++|+. |+.|.+||..+..+...+.+|...|-++.+- ...+.+|+|+|.||.|+|||+...
T Consensus 206 ~~~~r~l~~~~l-~~~~L~vG~d-~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 206 ENPKRILCATFL-DGSELLVGGD-NEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred hccccceeeeec-CCceEEEecC-CceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 122446666664 5678888888 9999999999999999999999999999843 226789999999999999999876
Q ss_pred cc
Q psy9598 798 KQ 799 (1915)
Q Consensus 798 ~~ 799 (1915)
..
T Consensus 284 ~k 285 (362)
T KOG0294|consen 284 TK 285 (362)
T ss_pred cc
Confidence 43
|
|
| >KOG0641|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-21 Score=205.95 Aligned_cols=261 Identities=20% Similarity=0.239 Sum_probs=208.3
Q ss_pred eeeeEEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcE-----EEEEeCCCCCEEEEEEeCC----CCEEEEE
Q psy9598 466 LRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKL-----LATLRGCSGEISDIAIDNR----NILLAAG 536 (1915)
Q Consensus 466 ~~~~~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~-----~~~l~gH~~~I~~Lafspd----g~~LaSg 536 (1915)
..+..+-..|.++|+|++|+|+|.+||||+.|.+|++.-.....+ -..|.-|.+.|..|+|-.+ +.+|+++
T Consensus 79 ~v~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~ 158 (350)
T KOG0641|consen 79 SVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASA 158 (350)
T ss_pred eEEeeeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEec
Confidence 334456678999999999999999999999999999975543222 2356779999999999653 5678887
Q ss_pred e-CCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccC
Q psy9598 537 T-VDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIR 615 (1915)
Q Consensus 537 s-~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~ 615 (1915)
+ .|..|.+-|..+|+..+.+.||++.|.++--. ++-++++|++|.+|++||++-..++..+...... -.
T Consensus 159 gagdc~iy~tdc~~g~~~~a~sghtghilalysw-----n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~-----~g 228 (350)
T KOG0641|consen 159 GAGDCKIYITDCGRGQGFHALSGHTGHILALYSW-----NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHD-----GG 228 (350)
T ss_pred CCCcceEEEeecCCCCcceeecCCcccEEEEEEe-----cCcEEEccCCCceEEEEeeeccceeeeccCcccC-----CC
Confidence 6 47788888999999999999999999887432 3479999999999999999988765544322100 00
Q ss_pred CCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCC
Q psy9598 616 PGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCS 695 (1915)
Q Consensus 616 ~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~ 695 (1915)
-....|.++++.|.|++|++|..|....+||+++ ...+..+..|+..|.|+.|+|...++++|+.|..|++-|++..
T Consensus 229 lessavaav~vdpsgrll~sg~~dssc~lydirg---~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgd 305 (350)
T KOG0641|consen 229 LESSAVAAVAVDPSGRLLASGHADSSCMLYDIRG---GRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGD 305 (350)
T ss_pred cccceeEEEEECCCcceeeeccCCCceEEEEeeC---CceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccc
Confidence 1236799999999999999999999999999954 4567788999999999999999999999999999999998754
Q ss_pred ceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECC
Q psy9598 696 QWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAF 752 (1915)
Q Consensus 696 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~ 752 (1915)
-. ..........|...+..+.|+|..-.+++++. |.++.+|-+.
T Consensus 306 la------------~el~~~vv~ehkdk~i~~rwh~~d~sfisssa-dkt~tlwa~~ 349 (350)
T KOG0641|consen 306 LA------------HELPIMVVAEHKDKAIQCRWHPQDFSFISSSA-DKTATLWALN 349 (350)
T ss_pred hh------------hcCceEEEEeccCceEEEEecCccceeeeccC-cceEEEeccC
Confidence 21 11112233457788889999999988888887 9999999763
|
|
| >KOG1036|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.6e-22 Score=218.55 Aligned_cols=269 Identities=18% Similarity=0.244 Sum_probs=216.7
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCc
Q psy9598 518 SGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDI 597 (1915)
Q Consensus 518 ~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~ 597 (1915)
...|++|.|+|.+..|+++++||++++||+........+ .|..++.+++|.+. ..+++|+.||.|+.+|+.++.
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~-~~~~plL~c~F~d~-----~~~~~G~~dg~vr~~Dln~~~ 86 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF-KHGAPLLDCAFADE-----STIVTGGLDGQVRRYDLNTGN 86 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe-ecCCceeeeeccCC-----ceEEEeccCceEEEEEecCCc
Confidence 567999999999999999999999999999887555555 48999999999873 689999999999999999875
Q ss_pred cccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCE
Q psy9598 598 DISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLR 677 (1915)
Q Consensus 598 ~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~ 677 (1915)
. ..+..|...|.|+.+++....+++|+.|++|++||.+. ......+. ....|.++.. .|+.
T Consensus 87 ~-------------~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~---~~~~~~~d-~~kkVy~~~v--~g~~ 147 (323)
T KOG1036|consen 87 E-------------DQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRN---KVVVGTFD-QGKKVYCMDV--SGNR 147 (323)
T ss_pred c-------------eeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccc---cccccccc-cCceEEEEec--cCCE
Confidence 3 12335778999999999888999999999999999853 12222222 2347887765 4779
Q ss_pred EEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCC---
Q psy9598 678 FVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNG--- 754 (1915)
Q Consensus 678 L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg--- 754 (1915)
|++|+.|..|.+||+++..... ..........+.||++-|++.-.++++- +|.|.+=.+...
T Consensus 148 LvVg~~~r~v~iyDLRn~~~~~--------------q~reS~lkyqtR~v~~~pn~eGy~~sSi-eGRVavE~~d~s~~~ 212 (323)
T KOG1036|consen 148 LVVGTSDRKVLIYDLRNLDEPF--------------QRRESSLKYQTRCVALVPNGEGYVVSSI-EGRVAVEYFDDSEEA 212 (323)
T ss_pred EEEeecCceEEEEEcccccchh--------------hhccccceeEEEEEEEecCCCceEEEee-cceEEEEccCCchHH
Confidence 9999999999999999765211 1223446678999999998887787777 999998776655
Q ss_pred -ceEEEeeCCCC---------CeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcC
Q psy9598 755 -DLVQVLKGHTN---------EVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSP 824 (1915)
Q Consensus 755 -~~i~~l~gH~~---------~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSp 824 (1915)
..-..|+.|.. +|++|+||| -...|||||.||.|.+||+.+.+. +..+. .....|.+++|+.
T Consensus 213 ~skkyaFkCHr~~~~~~~~~yPVNai~Fhp-~~~tfaTgGsDG~V~~Wd~~~rKr--l~q~~-----~~~~SI~slsfs~ 284 (323)
T KOG1036|consen 213 QSKKYAFKCHRLSEKDTEIIYPVNAIAFHP-IHGTFATGGSDGIVNIWDLFNRKR--LKQLA-----KYETSISSLSFSM 284 (323)
T ss_pred hhhceeEEeeecccCCceEEEEeceeEecc-ccceEEecCCCceEEEccCcchhh--hhhcc-----CCCCceEEEEecc
Confidence 44556777753 799999999 677899999999999999998877 66665 2346799999999
Q ss_pred CCCEEEEEeC
Q psy9598 825 DGTTCALTDS 834 (1915)
Q Consensus 825 dg~~Lasg~~ 834 (1915)
||..||++++
T Consensus 285 dG~~LAia~s 294 (323)
T KOG1036|consen 285 DGSLLAIASS 294 (323)
T ss_pred CCCeEEEEec
Confidence 9999999986
|
|
| >KOG0305|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.7e-22 Score=241.48 Aligned_cols=280 Identities=18% Similarity=0.234 Sum_probs=225.0
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccc
Q psy9598 522 SDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISK 601 (1915)
Q Consensus 522 ~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~ 601 (1915)
+-|.|+. .+.||.|. ...|.+|+..++........+...|+++.|++ +|.+|++|..+|.|.|||......+..
T Consensus 181 nlldWss-~n~laVal-g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~----~G~~LavG~~~g~v~iwD~~~~k~~~~ 254 (484)
T KOG0305|consen 181 NLLDWSS-ANVLAVAL-GQSVYLWSASSGSVTELCSFGEELVTSVKWSP----DGSHLAVGTSDGTVQIWDVKEQKKTRT 254 (484)
T ss_pred hHhhccc-CCeEEEEe-cceEEEEecCCCceEEeEecCCCceEEEEECC----CCCEEEEeecCCeEEEEehhhcccccc
Confidence 3467884 44666665 45799999999987666666689999999999 459999999999999999887765444
Q ss_pred eeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEE
Q psy9598 602 TVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSG 681 (1915)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sg 681 (1915)
+... |...|-|++|+ +..+.+|+.+|.|.++|++....... .+.+|...|..+.|++++.+|++|
T Consensus 255 ~~~~-----------h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~--~~~~H~qeVCgLkws~d~~~lASG 319 (484)
T KOG0305|consen 255 LRGS-----------HASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVS--TLQGHRQEVCGLKWSPDGNQLASG 319 (484)
T ss_pred ccCC-----------cCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhh--hhhcccceeeeeEECCCCCeeccC
Confidence 4331 67889999998 66899999999999999965443332 478999999999999999999999
Q ss_pred eCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCC-CEEEEEE-ecCCeEEEEECCCCceEEE
Q psy9598 682 SRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASD-RWVITAI-NFNFQIKIWDAFNGDLVQV 759 (1915)
Q Consensus 682 s~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg-~~L~t~s-~~Dg~I~vwD~~tg~~i~~ 759 (1915)
+.|+.+.|||....... .....|...|.+++|+|-. ..||+|+ ..|++|++||..+|..+..
T Consensus 320 gnDN~~~Iwd~~~~~p~----------------~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~ 383 (484)
T KOG0305|consen 320 GNDNVVFIWDGLSPEPK----------------FTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDS 383 (484)
T ss_pred CCccceEeccCCCcccc----------------EEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecc
Confidence 99999999998544322 2345688999999999964 4455543 3599999999999999998
Q ss_pred eeCCCCCeEEEEEccCCCCEEEEEe-cCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEEeCCCeE
Q psy9598 760 LKGHTNEVFVLESHPFDSRVLLSAG-HDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHL 838 (1915)
Q Consensus 760 l~gH~~~V~sl~~sp~dg~~LaSgs-~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~dG~I 838 (1915)
+... +.|..|.|++....++.+.| .++.|.||+..+.+. +..+. .|...|..+++||||..|++|+.|.++
T Consensus 384 vdtg-sQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~--~~~l~-----gH~~RVl~la~SPdg~~i~t~a~DETl 455 (484)
T KOG0305|consen 384 VDTG-SQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKL--VAELL-----GHTSRVLYLALSPDGETIVTGAADETL 455 (484)
T ss_pred cccC-CceeeEEEcCCCCEEEEecCCCCCcEEEEeccccce--eeeec-----CCcceeEEEEECCCCCEEEEecccCcE
Confidence 8644 46999999994444555544 477999999988666 55444 677889999999999999999999999
Q ss_pred EEEeCCCC
Q psy9598 839 LVYGLGGF 846 (1915)
Q Consensus 839 ~Iwdl~s~ 846 (1915)
++|++-..
T Consensus 456 rfw~~f~~ 463 (484)
T KOG0305|consen 456 RFWNLFDE 463 (484)
T ss_pred EeccccCC
Confidence 99998764
|
|
| >cd05504 Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_like subfamily | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.4e-23 Score=212.26 Aligned_cols=103 Identities=35% Similarity=0.542 Sum_probs=98.6
Q ss_pred chhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCccccCCCcCCHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhhcC
Q psy9598 115 PFNWKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQ 194 (1915)
Q Consensus 115 ~~~~~~~~~~il~~l~~~~~~~~F~~pvd~~~~pdY~~iIk~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~Lif~N~~~yN~ 194 (1915)
.......|..||+.|++++.++||..|||..++||||++|++||||+||++||+++.|.|+++|..||+|||.||++||+
T Consensus 10 ~~~~~~~c~~il~~l~~~~~s~~F~~pvd~~~~pdY~~vI~~PmDL~tI~~kL~~~~Y~s~~~f~~Dv~LI~~Na~~yN~ 89 (115)
T cd05504 10 GPLNLSALEQLLVEIVKHKDSWPFLRPVSKIEVPDYYDIIKKPMDLGTIKEKLNMGEYKLAEEFLSDIQLVFSNCFLYNP 89 (115)
T ss_pred CHHHHHHHHHHHHHHHhCCCchhhcCCCCccccccHHHHhcCcccHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 34556889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHH
Q psy9598 195 NKRSKIYIMTTRLSEFAEEHLRRL 218 (1915)
Q Consensus 195 ~~~s~i~~~a~~l~~~f~~~~~~~ 218 (1915)
++ |.+|.+|..|+++|+++++.+
T Consensus 90 ~~-s~i~~~A~~l~~~f~~~~~~~ 112 (115)
T cd05504 90 EH-TSVYKAGTRLQRFFIKRCRKL 112 (115)
T ss_pred CC-CHHHHHHHHHHHHHHHHHHHh
Confidence 77 999999999999999999886
|
Bromo adjacent to zinc finger 1A (BAZ1A) was identified as a novel human bromodomain gene by cDNA library screening. The Drosophila homologue, Acf1, is part of the CHRAC (chromatin accessibility complex) and regulates ISWI-induced nucleosome remodeling. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >cd05501 Bromo_SP100C_like Bromodomain, SP100C_like subfamily | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.8e-23 Score=203.36 Aligned_cols=98 Identities=20% Similarity=0.328 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCccccCCCcCCHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhhcCCCCC
Q psy9598 119 KNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQNKRS 198 (1915)
Q Consensus 119 ~~~~~~il~~l~~~~~~~~F~~pvd~~~~pdY~~iIk~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~Lif~N~~~yN~~~~s 198 (1915)
.+.|+.||.+|++++.|++|..+ ..++||||+|||+||||+||++||.+++|.|+++|.+||+|||+||++||+++
T Consensus 4 l~~ce~il~~l~~~~~s~~f~~~--p~~~pdY~~iIk~PMDL~tI~~kL~~~~Y~s~~ef~~D~~Lif~N~~~yN~~~-- 79 (102)
T cd05501 4 LLKCEFLLLKVYCMSKSGFFISK--PYYIRDYCQGIKEPMWLNKVKERLNERVYHTVEGFVRDMRLIFHNHKLFYKDD-- 79 (102)
T ss_pred HHHHHHHHHHHHhCcccccccCC--CCCCCchHHHcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHcCCC--
Confidence 35699999999999999999764 35899999999999999999999999999999999999999999999999954
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy9598 199 KIYIMTTRLSEFAEEHLRRLTV 220 (1915)
Q Consensus 199 ~i~~~a~~l~~~f~~~~~~~~~ 220 (1915)
.++.+|..|++.|+++|+.+.+
T Consensus 80 ~~~~~a~~L~~~Fek~~~~~f~ 101 (102)
T cd05501 80 DFGQVGITLEKKFEKNFKEVFA 101 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 8999999999999999998753
|
The SP100C protein is a splice variant of SP100, a major component of PML-SP100 nuclear bodies (NBs), which are poorly understood. It is covalently modified by SUMO-1 and may play a role in processes at the chromatin level. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >cd05507 Bromo_brd8_like Bromodomain, brd8_like subgroup | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.2e-23 Score=209.56 Aligned_cols=101 Identities=29% Similarity=0.491 Sum_probs=97.6
Q ss_pred hHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCccccCCCcCCHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhhcCCC
Q psy9598 117 NWKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQNK 196 (1915)
Q Consensus 117 ~~~~~~~~il~~l~~~~~~~~F~~pvd~~~~pdY~~iIk~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~Lif~N~~~yN~~~ 196 (1915)
.|++.|..||+.|++|+.++||.+||+...+||||++|++||||+||++||+++.|.++++|.+||+|||.||+.||+++
T Consensus 3 ~~~~~~~~il~~l~~~~~a~~F~~pV~~~~~p~Y~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~ 82 (104)
T cd05507 3 AWKKAILLVYRTLASHRYASVFLKPVTEDIAPGYHSVVYRPMDLSTIKKNIENGTIRSTAEFQRDVLLMFQNAIMYNSSD 82 (104)
T ss_pred HHHHHHHHHHHHHHcCCCCHhhcCCCCccccCCHHHHhCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999977
Q ss_pred CCHHHHHHHHHHHHHHHHHHHH
Q psy9598 197 RSKIYIMTTRLSEFAEEHLRRL 218 (1915)
Q Consensus 197 ~s~i~~~a~~l~~~f~~~~~~~ 218 (1915)
+.+|.+|..|++.|.+++..+
T Consensus 83 -s~v~~~A~~l~~~~~~~~~~~ 103 (104)
T cd05507 83 -HDVYLMAVEMQREVMSQIQQL 103 (104)
T ss_pred -CHHHHHHHHHHHHHHHHhhcc
Confidence 999999999999999888654
|
In mammals, brd8 (bromodomain containing 8) interacts with the thyroid hormone receptor in a ligand-dependent fashion and enhances thyroid hormone-dependent activation from thyroid response elements. Brd8 is thought to be a nuclear receptor coactivator. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >cd05503 Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like subfamily | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-23 Score=207.49 Aligned_cols=96 Identities=31% Similarity=0.565 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCccccCCCcCCHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhhcCCCCC
Q psy9598 119 KNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQNKRS 198 (1915)
Q Consensus 119 ~~~~~~il~~l~~~~~~~~F~~pvd~~~~pdY~~iIk~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~Lif~N~~~yN~~~~s 198 (1915)
..+|..||..|++++.++||+.||+...+|+||++|++||||+||++||+++.|.|+++|.+||+|||.||+.||+++ |
T Consensus 2 ~~~c~~il~~l~~~~~~~~F~~pv~~~~~p~Y~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~-s 80 (97)
T cd05503 2 LALCETILDEMEAHEDAWPFLEPVNTKLVPGYRKIIKKPMDFSTIREKLESGQYKTLEEFAEDVRLVFDNCETFNEDD-S 80 (97)
T ss_pred HHHHHHHHHHHHcCCCchhhcCCCCccccCCHHHHhCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCC-C
Confidence 367999999999999999999999999999999999999999999999999999999999999999999999999976 9
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy9598 199 KIYIMTTRLSEFAEEHL 215 (1915)
Q Consensus 199 ~i~~~a~~l~~~f~~~~ 215 (1915)
.++++|..|+++|+++|
T Consensus 81 ~i~~~a~~l~~~f~~~~ 97 (97)
T cd05503 81 EVGRAGHNMRKFFEKRW 97 (97)
T ss_pred HHHHHHHHHHHHHHHhC
Confidence 99999999999999876
|
Bromo adjacent to zinc finger 2A (BAZ2A) and 2B (BAZ2B) were identified as a novel human bromodomain gene by cDNA library screening. BAZ2A is also known as Tip5 (Transcription termination factor I-interacting protein 5) and hWALp3. The proteins may play roles in transcriptional regulation. Human Tip5 is part of a complex termed NoRC (nucleolar remodeling complex), which induces nucleosome sliding and may play a role in the regulation of the rDNA locus. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >KOG0646|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.8e-22 Score=230.03 Aligned_cols=290 Identities=20% Similarity=0.306 Sum_probs=228.9
Q ss_pred EEECC-CcEEEEECCCCcEEEEEeCC-CCCEEEEEEeCCCCEEEEEe-CCCcEEEEECCCCceEEEeecCCCCeEEEEec
Q psy9598 493 TGADD-LLIKLWRARDGKLLATLRGC-SGEISDIAIDNRNILLAAGT-VDKTIRIWNLQTLAPISVLVGHQGIITGVNFC 569 (1915)
Q Consensus 493 TGs~D-g~I~IWd~~tg~~~~~l~gH-~~~I~~Lafspdg~~LaSgs-~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fs 569 (1915)
+++.| .++.+||+.||..+.+++|. ...-.++..- .+.+++++. .-..|.+|.+..........--.+.|.+++-+
T Consensus 12 ssS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~ 90 (476)
T KOG0646|consen 12 SSSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASS 90 (476)
T ss_pred ccCCCCcceeEEecCCCceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhhhhcccccceeeeecC
Confidence 34444 45999999999999999876 2222222221 234666664 44579999997655444333356789999999
Q ss_pred cCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecC
Q psy9598 570 PLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDG 649 (1915)
Q Consensus 570 p~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~ 649 (1915)
|. |.+|+.|+-.|.|.+|.+.+|..+..+ .+|...|+|+.|+-||.+|++||.||.|.+|.+..
T Consensus 91 n~----G~~l~ag~i~g~lYlWelssG~LL~v~------------~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~ 154 (476)
T KOG0646|consen 91 NL----GYFLLAGTISGNLYLWELSSGILLNVL------------SAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTD 154 (476)
T ss_pred CC----ceEEEeecccCcEEEEEeccccHHHHH------------HhhccceeEEEEeCCCcEEEecCCCccEEEEEEEe
Confidence 84 488888889999999999999754433 35678899999999999999999999999999842
Q ss_pred ------CCCCceeEEeccCCCCeeEEEEcCCC--CEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCcccccccccc
Q psy9598 650 ------VDSPLGILEVEEHSDKVDSIQWSHSH--LRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKK 721 (1915)
Q Consensus 650 ------~~~~~~i~~l~~h~~~V~sl~fspdg--~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 721 (1915)
......+..+..|+-+|+.+...+.| .+|+|+|.|.++++||+..+..+.... ..
T Consensus 155 lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-----------------fp 217 (476)
T KOG0646|consen 155 LVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-----------------FP 217 (476)
T ss_pred ecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-----------------cC
Confidence 22566778899999999999987654 589999999999999999987554321 44
Q ss_pred ccEEEEEECCCCCEEEEEEecCCeEEEEECCC----------------CceEEEeeCCCC--CeEEEEEccCCCCEEEEE
Q psy9598 722 IKVTMVAWDASDRWVITAINFNFQIKIWDAFN----------------GDLVQVLKGHTN--EVFVLESHPFDSRVLLSA 783 (1915)
Q Consensus 722 ~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~t----------------g~~i~~l~gH~~--~V~sl~~sp~dg~~LaSg 783 (1915)
..+.+++++|.++.+++|+. +|.|.+.++.. +..+..+.||.+ .|+|++++- ||.+|++|
T Consensus 218 ~si~av~lDpae~~~yiGt~-~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~-DgtlLlSG 295 (476)
T KOG0646|consen 218 SSIKAVALDPAERVVYIGTE-EGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAIST-DGTLLLSG 295 (476)
T ss_pred CcceeEEEcccccEEEecCC-cceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEec-CccEEEee
Confidence 67899999999999999998 99999988753 234667889998 999999998 99999999
Q ss_pred ecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCC
Q psy9598 784 GHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPD 825 (1915)
Q Consensus 784 s~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpd 825 (1915)
+.||.|+|||+.+.++ ++++. +..++|+.+.+.|-
T Consensus 296 d~dg~VcvWdi~S~Q~--iRtl~-----~~kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 296 DEDGKVCVWDIYSKQC--IRTLQ-----TSKGPVTNLQINPL 330 (476)
T ss_pred CCCCCEEEEecchHHH--HHHHh-----hhccccceeEeecc
Confidence 9999999999999888 66654 35578888888663
|
|
| >KOG4283|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=1e-21 Score=214.56 Aligned_cols=295 Identities=17% Similarity=0.274 Sum_probs=224.1
Q ss_pred cCCCCcEEEEEEcC-CCCEEEEEECCCcEEEEECCCCc------E----EEE-----EeCCCCCEEEEEEeC-CCCEEEE
Q psy9598 473 LGHLSAVFCVLFDK-LGEVIVTGADDLLIKLWRARDGK------L----LAT-----LRGCSGEISDIAIDN-RNILLAA 535 (1915)
Q Consensus 473 ~gH~~~V~~vafsp-dg~~LaTGs~Dg~I~IWd~~tg~------~----~~~-----l~gH~~~I~~Lafsp-dg~~LaS 535 (1915)
.-|.++|+++.+.+ .|+|+++|+.||.|.|||+.... + +.. -.+|.-.|.++.|-| |..++.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 36889999999987 58999999999999999987532 1 111 147888999999988 6668899
Q ss_pred EeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccC
Q psy9598 536 GTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIR 615 (1915)
Q Consensus 536 gs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~ 615 (1915)
+|.|.+++|||++|.+....|. ..+.|.+-+++|... ...++++|..+-.|++.|+.+|... ..+.
T Consensus 120 sSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~-sHcLiA~gtr~~~VrLCDi~SGs~s------------H~Ls 185 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAM-SHCLIAAGTRDVQVRLCDIASGSFS------------HTLS 185 (397)
T ss_pred ccccceEEEeecccceeeEEee-cCceeehhhcChhhh-cceEEEEecCCCcEEEEeccCCcce------------eeec
Confidence 9999999999999988777775 567888888988651 3457778888899999999988543 3345
Q ss_pred CCCCceEEEEECCCCcE-EEEEeCCCeEEEEEecCCC------------CCceeEEeccCCCCeeEEEEcCCCCEEEEEe
Q psy9598 616 PGNAHILCSSFSPGGLF-LATGSGDHHVRVYKMDGVD------------SPLGILEVEEHSDKVDSIQWSHSHLRFVSGS 682 (1915)
Q Consensus 616 ~~~~~V~~l~fspdg~~-Lasgs~Dg~I~IwDl~~~~------------~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs 682 (1915)
+|...|.++.|+|...+ |++|+.||.|++||++... .+..+..-.+|.+.|.+++|+.+|.++++++
T Consensus 186 GHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~g 265 (397)
T KOG4283|consen 186 GHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCG 265 (397)
T ss_pred cccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhcc
Confidence 77899999999998765 7889999999999996431 1112223457889999999999999999999
Q ss_pred CCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeC
Q psy9598 683 RDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKG 762 (1915)
Q Consensus 683 ~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~g 762 (1915)
.|..+++|+...+....... +........ ...+. +. +.+...+ +.-..++.+.++++-.|..+..+.+
T Consensus 266 td~r~r~wn~~~G~ntl~~~-------g~~~~n~~~--~~~~~-~~-~~~s~vf-v~~p~~~~lall~~~sgs~ir~l~~ 333 (397)
T KOG4283|consen 266 TDDRIRVWNMESGRNTLREF-------GPIIHNQTT--SFAVH-IQ-SMDSDVF-VLFPNDGSLALLNLLEGSFVRRLST 333 (397)
T ss_pred CccceEEeecccCccccccc-------ccccccccc--cceEE-Ee-ecccceE-EEEecCCeEEEEEccCceEEEeeec
Confidence 99999999998876321110 000000111 11111 22 2222222 2333378999999999999999999
Q ss_pred CCCCeEEEEEccCCCCEEEEEecCceEEEEEC
Q psy9598 763 HTNEVFVLESHPFDSRVLLSAGHDGLIIIWDI 794 (1915)
Q Consensus 763 H~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl 794 (1915)
|-..|.|.++-| +-..+.+|..||.|..|-.
T Consensus 334 h~k~i~c~~~~~-~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 334 HLKRINCAAYRP-DFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred ccceeeEEeecC-chhhhhccccCCccccccc
Confidence 988999999988 7778899999999999987
|
|
| >cd05495 Bromo_cbp_like Bromodomain, cbp_like subfamily | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.7e-23 Score=208.05 Aligned_cols=104 Identities=38% Similarity=0.640 Sum_probs=99.2
Q ss_pred chhhHHHHHHHHHHHHcC-CCCCCCCCCCCCC--CCCCccccccCccchhhHHhhhcCCCCCCHHHHHHHHHHHHHHhhh
Q psy9598 1530 PFNWKNECREVLETLWVC-PDSEPFRKPVDKL--DHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRN 1606 (1915)
Q Consensus 1530 ~~~~~~~~~~ll~~l~~~-~~s~~F~~pv~~~--~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~Dv~lif~Na~~ 1606 (1915)
|++|++.|..+|+.|+++ +.|+||+.||++. ++||||++|++||||+||++||.+|.|.++.+|..||+|||.||+.
T Consensus 1 ~~~l~~~~~~il~~l~~~~~~s~~F~~PV~~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~ 80 (108)
T cd05495 1 PEELRQALMPTLEKLYKQDPESLPFRQPVDPKLLGIPDYFDIVKNPMDLSTIRRKLDTGQYQDPWQYVDDVWLMFDNAWL 80 (108)
T ss_pred CHHHHHHHHHHHHHHHHcCcccchhcCCCCccccCCCcHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 467899999999999998 9999999999965 7999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy9598 1607 YNQNKRSKIYIMTTRLSEFAEEHLRRLT 1634 (1915)
Q Consensus 1607 yN~~~~s~i~~~a~~l~~~f~~~~~~~~ 1634 (1915)
||+++ |.+|.+|..|+++|+++++.+.
T Consensus 81 yN~~~-s~i~~~a~~l~~~F~~~~~~~~ 107 (108)
T cd05495 81 YNRKT-SRVYKYCTKLAEVFEQEIDPVM 107 (108)
T ss_pred HCCCC-CHHHHHHHHHHHHHHHHHHHHh
Confidence 99987 9999999999999999998764
|
Cbp (CREB binding protein or CREBBP) is an acetyltransferase acting on histone, which gives a specific tag for transcriptional activation and also acetylates non-histone proteins. CREBBP binds specifically to phosphorylated CREB protein and augments the activity of phosphorylated CREB to activate transcription of cAMP-responsive genes. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.7e-20 Score=226.85 Aligned_cols=295 Identities=13% Similarity=0.085 Sum_probs=213.7
Q ss_pred CCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEE-EEEeCCCcEEEEECCCCceEEEeecCCCCeEEE
Q psy9598 488 GEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILL-AAGTVDKTIRIWNLQTLAPISVLVGHQGIITGV 566 (1915)
Q Consensus 488 g~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~L-aSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl 566 (1915)
+.+++|++.|+.|.+||+.+++.+..+.+|.. +.+++|++++..| ++++.++.|++||+.+++.+..+..+.. +..+
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~ 78 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELF 78 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEE
Confidence 35788999999999999999999999887654 6789999999876 5667889999999999988877765544 5678
Q ss_pred EeccCccCCCcEE-EEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCC-eEEE
Q psy9598 567 NFCPLEVNGFNYL-ASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDH-HVRV 644 (1915)
Q Consensus 567 ~fsp~~~~d~~~L-~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg-~I~I 644 (1915)
+|+|++ +.| ++++.++.|.+||+.+...+..+.. ...+.+++|+|+|.++++++.++ .+.+
T Consensus 79 ~~~~~g----~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-------------~~~~~~~~~~~dg~~l~~~~~~~~~~~~ 141 (300)
T TIGR03866 79 ALHPNG----KILYIANEDDNLVTVIDIETRKVLAEIPV-------------GVEPEGMAVSPDGKIVVNTSETTNMAHF 141 (300)
T ss_pred EECCCC----CEEEEEcCCCCeEEEEECCCCeEEeEeeC-------------CCCcceEEECCCCCEEEEEecCCCeEEE
Confidence 899843 555 4556789999999987643322211 13457899999999999988775 4677
Q ss_pred EEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEE-eCCCcEEEEEccCCceEEeeecccccCCCCcccccccccccc
Q psy9598 645 YKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSG-SRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIK 723 (1915)
Q Consensus 645 wDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sg-s~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 723 (1915)
||... ...+..+. ....+.+++|+++|.+|+++ ..+|.|.+||+.+++........ ... .......
T Consensus 142 ~d~~~---~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~---~~~------~~~~~~~ 208 (300)
T TIGR03866 142 IDTKT---YEIVDNVL-VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFE---IPG------VHPEAVQ 208 (300)
T ss_pred EeCCC---CeEEEEEE-cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeec---ccc------cccccCC
Confidence 78743 22222222 23346789999999988554 56999999999987643321100 000 0001122
Q ss_pred EEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEE-ecCceEEEEECCCCccccc
Q psy9598 724 VTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSA-GHDGLIIIWDILSSKQRGY 802 (1915)
Q Consensus 724 V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSg-s~DG~I~IWdl~s~~~~~~ 802 (1915)
...++|++++++++++...++.|.+||+.+++.+..+. +...+.+++|+| ++.+|+++ +.+|.|.|||+.+++. +
T Consensus 209 ~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~-~g~~l~~~~~~~~~i~v~d~~~~~~--~ 284 (300)
T TIGR03866 209 PVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQLAFTP-DEKYLLTTNGVSNDVSVIDVAALKV--I 284 (300)
T ss_pred ccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceEEECC-CCCEEEEEcCCCCeEEEEECCCCcE--E
Confidence 34688999999977665447789999999988877654 445789999999 88888876 5699999999999887 6
Q ss_pred eeeeeeecCCCCcceEEEEEcC
Q psy9598 803 KWFHNIVEGQGEGALFDGKWSP 824 (1915)
Q Consensus 803 ~~~~~~~~~~~~~~V~~vafSp 824 (1915)
..+. .....+.++|+|
T Consensus 285 ~~~~------~~~~~~~~~~~~ 300 (300)
T TIGR03866 285 KSIK------VGRLPWGVVVRP 300 (300)
T ss_pred EEEE------cccccceeEeCC
Confidence 6654 124457777765
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0289|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.8e-21 Score=223.02 Aligned_cols=285 Identities=21% Similarity=0.253 Sum_probs=232.3
Q ss_pred CCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCcc
Q psy9598 519 GEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDID 598 (1915)
Q Consensus 519 ~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~ 598 (1915)
..|+++...+....+++|+.|.++.++|..+++.+.++.||...|+++.|+|.. ..+++++.|..|++|.......
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~----~~v~~aSad~~i~vws~~~~s~ 295 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDL----DTVITASADEIIRVWSVPLSSE 295 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccch----hheeecCCcceEEeeccccccC
Confidence 457778888877789999999999999999999999999999999999999954 8999999999999998765532
Q ss_pred ccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEE
Q psy9598 599 ISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRF 678 (1915)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L 678 (1915)
. ....+|...|+.+..+|.|.+|++++.||+..+.|+..... .....-....-.+++.+|+|||.+|
T Consensus 296 ~------------~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~-lt~vs~~~s~v~~ts~~fHpDgLif 362 (506)
T KOG0289|consen 296 P------------TSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQ-LTVVSDETSDVEYTSAAFHPDGLIF 362 (506)
T ss_pred c------------cccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcE-EEEEeeccccceeEEeeEcCCceEE
Confidence 1 22346789999999999999999999999999999943322 2222122233458999999999999
Q ss_pred EEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEE
Q psy9598 679 VSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQ 758 (1915)
Q Consensus 679 ~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~ 758 (1915)
.+|+.||.|+|||+..+.. ...+.+|.++|..++|+-+|-||++++. |+.|++||++..+...
T Consensus 363 gtgt~d~~vkiwdlks~~~----------------~a~Fpght~~vk~i~FsENGY~Lat~ad-d~~V~lwDLRKl~n~k 425 (506)
T KOG0289|consen 363 GTGTPDGVVKIWDLKSQTN----------------VAKFPGHTGPVKAISFSENGYWLATAAD-DGSVKLWDLRKLKNFK 425 (506)
T ss_pred eccCCCceEEEEEcCCccc----------------cccCCCCCCceeEEEeccCceEEEEEec-CCeEEEEEehhhcccc
Confidence 9999999999999987651 2234568999999999999999999999 9999999999888777
Q ss_pred EeeCCC-CCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEEeCCCe
Q psy9598 759 VLKGHT-NEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGH 837 (1915)
Q Consensus 759 ~l~gH~-~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~dG~ 837 (1915)
++.-.. ..|.+++|.+ .|.+|+.+|.|=.|++++-.+..-..+..+. .+.+..+++.|....++|++++.|..
T Consensus 426 t~~l~~~~~v~s~~fD~-SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~-----~~sg~st~v~Fg~~aq~l~s~smd~~ 499 (506)
T KOG0289|consen 426 TIQLDEKKEVNSLSFDQ-SGTYLGIAGSDLQVYICKKKTKSWTEIKELA-----DHSGLSTGVRFGEHAQYLASTSMDAI 499 (506)
T ss_pred eeeccccccceeEEEcC-CCCeEEeecceeEEEEEecccccceeeehhh-----hcccccceeeecccceEEeeccchhh
Confidence 776433 3799999999 9999999998877877775443321133332 34468889999999999999999999
Q ss_pred EEEEeC
Q psy9598 838 LLVYGL 843 (1915)
Q Consensus 838 I~Iwdl 843 (1915)
++|+.+
T Consensus 500 l~~~a~ 505 (506)
T KOG0289|consen 500 LRLYAL 505 (506)
T ss_pred eEEeec
Confidence 888865
|
|
| >cd05505 Bromo_WSTF_like Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like) | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.9e-23 Score=204.38 Aligned_cols=94 Identities=30% Similarity=0.513 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHcCCCCCCCCCCCCCCCCCCccccccCccchhhHHhhhcCCCCCCHHHHHHHHHHHHHHhhhhcCCCCCH
Q psy9598 1535 NECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQNKRSK 1614 (1915)
Q Consensus 1535 ~~~~~ll~~l~~~~~s~~F~~pv~~~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~Dv~lif~Na~~yN~~~~s~ 1614 (1915)
++|.+||+.|++++.|+||+.||++.++||||++|++||||+||++||+.|.|.|+++|.+||+|||.||+.||+++ |.
T Consensus 3 ~~c~~il~~l~~~~~s~~F~~pv~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~-s~ 81 (97)
T cd05505 3 QKCEEILSKILKYRFSWPFREPVTADEAEDYKKVITNPMDLQTMQTKCSCGSYSSVQEFLDDMKLVFSNAEKYYENG-SY 81 (97)
T ss_pred HHHHHHHHHHHhCCCcccccCCCChhhcccHHHHcCCcCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCC-CH
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999988 99
Q ss_pred HHHHHHHHHHHHHHH
Q psy9598 1615 IYIMTTRLSEFAEEH 1629 (1915)
Q Consensus 1615 i~~~a~~l~~~f~~~ 1629 (1915)
||.+|..|+++|.++
T Consensus 82 i~~~a~~le~~f~~~ 96 (97)
T cd05505 82 VLSCMRKTEQCCVNL 96 (97)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999999875
|
The Williams-Beuren syndrome deletion transcript 9 is a putative transcriptional regulator. WSTF was found to play a role in vitamin D-mediated transcription as part of two chromatin remodeling complexes, WINAC and WICH. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >KOG0264|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.3e-22 Score=230.08 Aligned_cols=264 Identities=19% Similarity=0.365 Sum_probs=209.5
Q ss_pred ecCCCCcEEEEEEcCCC-CEEEEEECCCcEEEEECCCC----------cEEEEEeCCCCCEEEEEEeCC-CCEEEEEeCC
Q psy9598 472 NLGHLSAVFCVLFDKLG-EVIVTGADDLLIKLWRARDG----------KLLATLRGCSGEISDIAIDNR-NILLAAGTVD 539 (1915)
Q Consensus 472 l~gH~~~V~~vafspdg-~~LaTGs~Dg~I~IWd~~tg----------~~~~~l~gH~~~I~~Lafspd-g~~LaSgs~D 539 (1915)
..-|.+.|+.+.+-|.. .+|||++..+.|.|||..+. .+-.+|.||...-.+|+|++. .-.|++|+.|
T Consensus 120 ~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d 199 (422)
T KOG0264|consen 120 KINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDD 199 (422)
T ss_pred eccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCC
Confidence 34699999999999865 56677888999999997543 223478999998899999985 4489999999
Q ss_pred CcEEEEECCCC-------ceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCcccccc
Q psy9598 540 KTIRIWNLQTL-------APISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNE 612 (1915)
Q Consensus 540 gtIrVWDl~tg-------~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~ 612 (1915)
++|++||+... .+...+.+|...|..++|++.. ..+|++++.|+.+.|||++++.... ..
T Consensus 200 ~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h---~~lF~sv~dd~~L~iwD~R~~~~~~----------~~ 266 (422)
T KOG0264|consen 200 HTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLH---EDLFGSVGDDGKLMIWDTRSNTSKP----------SH 266 (422)
T ss_pred CcEEEEeccccccCCccccceEEeecCCcceehhhccccc---hhhheeecCCCeEEEEEcCCCCCCC----------cc
Confidence 99999999743 3456788999999999999964 5899999999999999999641111 12
Q ss_pred ccCCCCCceEEEEECC-CCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCC-CEEEEEeCCCcEEEE
Q psy9598 613 RIRPGNAHILCSSFSP-GGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSH-LRFVSGSRDGTALIW 690 (1915)
Q Consensus 613 ~~~~~~~~V~~l~fsp-dg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg-~~L~sgs~DG~I~IW 690 (1915)
...+|.+.|.|++|+| ++..||+|+.|++|.+||+++... ++..+.+|...|.+|.|+|.. ..|++++.||.+.||
T Consensus 267 ~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~--~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vW 344 (422)
T KOG0264|consen 267 SVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNK--PLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVW 344 (422)
T ss_pred cccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhccc--CceeccCCCcceEEEEeCCCCCceeEecccCCcEEEE
Confidence 2346789999999999 466788999999999999976553 678899999999999999975 478999999999999
Q ss_pred EccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECC
Q psy9598 691 YYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAF 752 (1915)
Q Consensus 691 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~ 752 (1915)
|+..-.-.....+.. -..........+|...|..+.|+|+..+++++...|+.+.||...
T Consensus 345 Dls~ig~eq~~eda~--dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 345 DLSRIGEEQSPEDAE--DGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred eccccccccChhhhc--cCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 987543221111111 111122355678999999999999999999888889999999874
|
|
| >KOG1445|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.9e-21 Score=226.48 Aligned_cols=206 Identities=15% Similarity=0.164 Sum_probs=141.2
Q ss_pred eEEecCCCCcEEEEEEcC-CCCEEEEEECCCcEEEEECCCCcEE------EEEeCCCCCEEEEEEeCCCCEEEEEeCCCc
Q psy9598 469 HYVNLGHLSAVFCVLFDK-LGEVIVTGADDLLIKLWRARDGKLL------ATLRGCSGEISDIAIDNRNILLAAGTVDKT 541 (1915)
Q Consensus 469 ~~~l~gH~~~V~~vafsp-dg~~LaTGs~Dg~I~IWd~~tg~~~------~~l~gH~~~I~~Lafspdg~~LaSgs~Dgt 541 (1915)
+-.|.+|.+.|+.+.|+| +..+|||||.|..|+||.+..|... ..+.+..-.|-||.|+|...-|+..+.-|+
T Consensus 72 i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a~g~ 151 (1012)
T KOG1445|consen 72 IGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGAHGS 151 (1012)
T ss_pred cceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEeccCce
Confidence 346789999999999998 5668999999999999999855211 123333456789999996544444455799
Q ss_pred EEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCcc-ccceeccCccccccccCCCCC-
Q psy9598 542 IRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDID-ISKTVFHEPVMFNERIRPGNA- 619 (1915)
Q Consensus 542 IrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~-~~~~~~~~~~~~~~~~~~~~~- 619 (1915)
+.|||+.+++.+..+.+|...|.+..|+. +|.+|+++|.|..|+|||.+.... +.... +|.+
T Consensus 152 v~i~D~stqk~~~el~~h~d~vQSa~Wse----DG~llatscKdkqirifDPRa~~~piQ~te------------~H~~~ 215 (1012)
T KOG1445|consen 152 VYITDISTQKTAVELSGHTDKVQSADWSE----DGKLLATSCKDKQIRIFDPRASMEPIQTTE------------GHGGM 215 (1012)
T ss_pred EEEEEcccCceeecccCCchhhhcccccc----CCceEeeecCCcceEEeCCccCCCcccccc------------ccccc
Confidence 99999999999999999999999999998 569999999999999999876532 11111 1111
Q ss_pred ceEEEEECCCCcEEEEEeCC----CeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEE-EEeCCCcEEEEE
Q psy9598 620 HILCSSFSPGGLFLATGSGD----HHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFV-SGSRDGTALIWY 691 (1915)
Q Consensus 620 ~V~~l~fspdg~~Lasgs~D----g~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~-sgs~DG~I~IWD 691 (1915)
.-..+.|.-+-..|++.+.+ ..|++||.+....+.....+....+ |.--.|.||.++|+ +|-.+.++.++.
T Consensus 216 rdsRv~w~Gn~~rlisTGF~~~R~reV~~~Dtr~f~~p~~tleld~stG-vLiPl~DpDt~llfLaGKG~~~l~~lE 291 (1012)
T KOG1445|consen 216 RDSRVLWAGNWERLISTGFTTKRIREVRAYDTRKFGAPVHTLELDSSTG-VLIPLYDPDTRLLFLAGKGTNKLFMLE 291 (1012)
T ss_pred hhheeeeccchhhhhhcccchhhheeeeeeeccccCCcceeEEeecccc-eEeeeecCCCceEEEecCCcceEEEEE
Confidence 12234555444455555543 4688999876666655555544333 33333566655433 333444454443
|
|
| >KOG1332|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.5e-22 Score=214.00 Aligned_cols=266 Identities=21% Similarity=0.265 Sum_probs=203.7
Q ss_pred eCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCC---ceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEE
Q psy9598 515 RGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTL---APISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFW 591 (1915)
Q Consensus 515 ~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg---~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iW 591 (1915)
..|...|.++...--|..|||++.|++|+|+.+... .++..|.||.++|+.++|... .-|.+|++++.||.|.||
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahP--k~G~iLAScsYDgkVIiW 85 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHP--KFGTILASCSYDGKVIIW 85 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeeccc--ccCcEeeEeecCceEEEE
Confidence 578999999999999999999999999999999754 468899999999999999752 357999999999999999
Q ss_pred ecccCccccceeccCccccccccCCCCCceEEEEECCC--CcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEE
Q psy9598 592 KYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPG--GLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSI 669 (1915)
Q Consensus 592 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspd--g~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl 669 (1915)
.-.++.-.... ....|...|++++|.|. |-.|++++.||.|.|++++.............|.-.|+++
T Consensus 86 ke~~g~w~k~~----------e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsV 155 (299)
T KOG1332|consen 86 KEENGRWTKAY----------EHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSV 155 (299)
T ss_pred ecCCCchhhhh----------hhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhcccccccee
Confidence 98777422221 22367889999999996 6689999999999999997653333344567899999999
Q ss_pred EEcCC---CCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeE
Q psy9598 670 QWSHS---HLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQI 746 (1915)
Q Consensus 670 ~fspd---g~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I 746 (1915)
+|.|. |..+-.+.. . .-..|++|+. |..|
T Consensus 156 swapa~~~g~~~~~~~~--------------------------------------~---------~~krlvSgGc-Dn~V 187 (299)
T KOG1332|consen 156 SWAPASAPGSLVDQGPA--------------------------------------A---------KVKRLVSGGC-DNLV 187 (299)
T ss_pred eecCcCCCccccccCcc--------------------------------------c---------ccceeeccCC-ccce
Confidence 99986 211100000 0 0134566666 8888
Q ss_pred EEEECCCC--ceEEEeeCCCCCeEEEEEccCC---CCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEE
Q psy9598 747 KIWDAFNG--DLVQVLKGHTNEVFVLESHPFD---SRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGK 821 (1915)
Q Consensus 747 ~vwD~~tg--~~i~~l~gH~~~V~sl~~sp~d---g~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~va 821 (1915)
+||...++ .+-.+|.+|.+.|..++|.|.. ..+||+|+.||+|.||....... .....+...-...++.+.
T Consensus 188 kiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e----~wk~tll~~f~~~~w~vS 263 (299)
T KOG1332|consen 188 KIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYE----PWKKTLLEEFPDVVWRVS 263 (299)
T ss_pred eeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccC----cccccccccCCcceEEEE
Confidence 88887765 3345688999999999999953 24899999999999998873322 111111122457899999
Q ss_pred EcCCCCEEEEEeCCCeEEEEeCC
Q psy9598 822 WSPDGTTCALTDSYGHLLVYGLG 844 (1915)
Q Consensus 822 fSpdg~~Lasg~~dG~I~Iwdl~ 844 (1915)
||..|++||+++.|+.|.+|--.
T Consensus 264 WS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 264 WSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred EeccccEEEEecCCcEEEEEEeC
Confidence 99999999999999999999654
|
|
| >cd05508 Bromo_RACK7 Bromodomain, RACK7_like subfamily | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.3e-23 Score=202.10 Aligned_cols=96 Identities=32% Similarity=0.530 Sum_probs=91.5
Q ss_pred hHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCccccCCCcCCHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhhcCCC
Q psy9598 117 NWKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQNK 196 (1915)
Q Consensus 117 ~~~~~~~~il~~l~~~~~~~~F~~pvd~~~~pdY~~iIk~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~Lif~N~~~yN~~~ 196 (1915)
++...++.+++.|+ |+.++||.+||+..++||||++|++||||+||++||++|.|.++++|.+||+|||.||++||+++
T Consensus 3 ~l~~~L~~~~~~~~-~~~s~~F~~PV~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~LI~~Na~~YN~~~ 81 (99)
T cd05508 3 QLSKLLKFALERMK-QPGAEPFLKPVDLEQFPDYAQYVFKPMDLSTLEKNVRKKAYGSTDAFLADAKWILHNAIIYNGGD 81 (99)
T ss_pred HHHHHHHHHHHHHh-CcCcchhcCCCChhhCCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 56778889999999 99999999999999999999999999999999999999999999999999999999999999977
Q ss_pred CCHHHHHHHHHHHHHHHH
Q psy9598 197 RSKIYIMTTRLSEFAEEH 214 (1915)
Q Consensus 197 ~s~i~~~a~~l~~~f~~~ 214 (1915)
|.++.+|..|.+.|+..
T Consensus 82 -s~i~~~A~~l~~~~~~e 98 (99)
T cd05508 82 -HKLTQAAKAIVKICEQE 98 (99)
T ss_pred -CHHHHHHHHHHHHHHhh
Confidence 99999999999999764
|
RACK7 (also called human protein kinase C-binding protein) was identified as a potential tumor suppressor genes, it shares domain architecture with BS69/ZMYND11; both have been implicated in the regulation of cellular proliferation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >KOG0299|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.9e-21 Score=223.66 Aligned_cols=283 Identities=18% Similarity=0.215 Sum_probs=223.0
Q ss_pred EeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceec-------c-CccccccccCCCCCceEEEEE
Q psy9598 555 VLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVF-------H-EPVMFNERIRPGNAHILCSSF 626 (1915)
Q Consensus 555 ~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~-------~-~~~~~~~~~~~~~~~V~~l~f 626 (1915)
.+..|.-+|++++++|+ ..++++++.+|+|.-|++.++....-..- + .+..... ..|...+.|++.
T Consensus 137 ~~~~H~~s~~~vals~d----~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r--~~h~keil~~av 210 (479)
T KOG0299|consen 137 VIGKHQLSVTSVALSPD----DKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESR--KGHVKEILTLAV 210 (479)
T ss_pred eeccccCcceEEEeecc----ccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCccc--ccccceeEEEEE
Confidence 44568999999999995 48999999999999999998864311110 0 1111111 378889999999
Q ss_pred CCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccc
Q psy9598 627 SPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNT 706 (1915)
Q Consensus 627 spdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~ 706 (1915)
++||++|++|+.|..|.||+.+ +...+..+.+|.+.|.+++|-.....|++++.|++|++|++.....
T Consensus 211 S~Dgkylatgg~d~~v~Iw~~~---t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~--------- 278 (479)
T KOG0299|consen 211 SSDGKYLATGGRDRHVQIWDCD---TLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSY--------- 278 (479)
T ss_pred cCCCcEEEecCCCceEEEecCc---ccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHH---------
Confidence 9999999999999999999994 4455667899999999999998888999999999999998875442
Q ss_pred cCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEEecC
Q psy9598 707 CLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHD 786 (1915)
Q Consensus 707 ~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~D 786 (1915)
.....+|...|..|....-++.+-+++. |.++++|++ .......+.+|.+.+-|++|-. ...|+|||.+
T Consensus 279 -------vetlyGHqd~v~~IdaL~reR~vtVGgr-DrT~rlwKi-~eesqlifrg~~~sidcv~~In--~~HfvsGSdn 347 (479)
T KOG0299|consen 279 -------VETLYGHQDGVLGIDALSRERCVTVGGR-DRTVRLWKI-PEESQLIFRGGEGSIDCVAFIN--DEHFVSGSDN 347 (479)
T ss_pred -------HHHHhCCccceeeechhcccceEEeccc-cceeEEEec-cccceeeeeCCCCCeeeEEEec--ccceeeccCC
Confidence 2345678889999988887887777777 999999999 4455567789999999999974 6789999999
Q ss_pred ceEEEEECCCCccccceeeeeeecC-------CCCcceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcc----cccC---
Q psy9598 787 GLIIIWDILSSKQRGYKWFHNIVEG-------QGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGGFKR----PQNI--- 852 (1915)
Q Consensus 787 G~I~IWdl~s~~~~~~~~~~~~~~~-------~~~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl~s~~~----~~~l--- 852 (1915)
|.|.+|++...++ +.+....... .++..|++++..|...++|+|+.+|.|++|.+..+-. +..+
T Consensus 348 G~IaLWs~~KKkp--lf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~ 425 (479)
T KOG0299|consen 348 GSIALWSLLKKKP--LFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLV 425 (479)
T ss_pred ceEEEeeecccCc--eeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecccc
Confidence 9999999998887 5444321110 1113899999999999999999999999999998732 2222
Q ss_pred --CCceeecCCCCeeeec
Q psy9598 853 --PRELFFHTDYRTLNRP 868 (1915)
Q Consensus 853 --~~~~~F~~d~~~Lv~~ 868 (1915)
...++|+.++..++.+
T Consensus 426 GfVNsl~f~~sgk~ivag 443 (479)
T KOG0299|consen 426 GFVNSLAFSNSGKRIVAG 443 (479)
T ss_pred cEEEEEEEccCCCEEEEe
Confidence 3378899999866644
|
|
| >KOG4283|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.5e-21 Score=211.63 Aligned_cols=298 Identities=20% Similarity=0.320 Sum_probs=224.8
Q ss_pred eCCCCCEEEEEEeC-CCCEEEEEeCCCcEEEEECCCCc----------eEE-----EeecCCCCeEEEEeccCccCCCcE
Q psy9598 515 RGCSGEISDIAIDN-RNILLAAGTVDKTIRIWNLQTLA----------PIS-----VLVGHQGIITGVNFCPLEVNGFNY 578 (1915)
Q Consensus 515 ~gH~~~I~~Lafsp-dg~~LaSgs~DgtIrVWDl~tg~----------~~~-----~l~~h~~~V~sl~fsp~~~~d~~~ 578 (1915)
+.|.+.|++|.+.+ .|+++++|+.||.|.|||++... .+. .-.+|.-.|.++.|-|. +..+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~---DtGm 116 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPI---DTGM 116 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeee---cCce
Confidence 45889999999987 58999999999999999997532 011 11357789999999995 5689
Q ss_pred EEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCC---CcEEEEEeCCCeEEEEEecCCCCCce
Q psy9598 579 LASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPG---GLFLATGSGDHHVRVYKMDGVDSPLG 655 (1915)
Q Consensus 579 L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspd---g~~Lasgs~Dg~I~IwDl~~~~~~~~ 655 (1915)
+.++|.|.++++||..+.+....+.+. +.|++-++||- ..+||+|..+-.|++.|+ ..+..
T Consensus 117 FtssSFDhtlKVWDtnTlQ~a~~F~me-------------~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi---~SGs~ 180 (397)
T KOG4283|consen 117 FTSSSFDHTLKVWDTNTLQEAVDFKME-------------GKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDI---ASGSF 180 (397)
T ss_pred eecccccceEEEeecccceeeEEeecC-------------ceeehhhcChhhhcceEEEEecCCCcEEEEec---cCCcc
Confidence 999999999999999987665554444 66778788873 457888999999999999 45567
Q ss_pred eEEeccCCCCeeEEEEcCCCC-EEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCC
Q psy9598 656 ILEVEEHSDKVDSIQWSHSHL-RFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDR 734 (1915)
Q Consensus 656 i~~l~~h~~~V~sl~fspdg~-~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~ 734 (1915)
.+.+.||.+.|.+|.|+|... .|++|+.||.|++||++...-....++..... ..+.......|.+.|+.++|+.++.
T Consensus 181 sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k-~~p~~~~n~ah~gkvngla~tSd~~ 259 (397)
T KOG4283|consen 181 SHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTK-RPPILKTNTAHYGKVNGLAWTSDAR 259 (397)
T ss_pred eeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCc-cCccccccccccceeeeeeecccch
Confidence 788999999999999999887 57899999999999998763222233322211 1112224567889999999999999
Q ss_pred EEEEEEecCCeEEEEECCCCceEEEee---CCCC----CeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeee
Q psy9598 735 WVITAINFNFQIKIWDAFNGDLVQVLK---GHTN----EVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHN 807 (1915)
Q Consensus 735 ~L~t~s~~Dg~I~vwD~~tg~~i~~l~---gH~~----~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~ 807 (1915)
++++++. |..+++|+..+|.-...-. .|.. .+. +. +- +...++---.++.+.++++.++.. +..+.
T Consensus 260 ~l~~~gt-d~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~-~~-~~-~s~vfv~~p~~~~lall~~~sgs~--ir~l~- 332 (397)
T KOG4283|consen 260 YLASCGT-DDRIRVWNMESGRNTLREFGPIIHNQTTSFAVH-IQ-SM-DSDVFVLFPNDGSLALLNLLEGSF--VRRLS- 332 (397)
T ss_pred hhhhccC-ccceEEeecccCcccccccccccccccccceEE-Ee-ec-ccceEEEEecCCeEEEEEccCceE--EEeee-
Confidence 9999999 9999999998775321110 1111 111 22 22 344455555668888888888877 66555
Q ss_pred eecCCCCcceEEEEEcCCCCEEEEEeCCCeEEEEeC
Q psy9598 808 IVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGL 843 (1915)
Q Consensus 808 ~~~~~~~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl 843 (1915)
.|...|.++++-|+-..+.+|+.||.|..|..
T Consensus 333 ----~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 333 ----THLKRINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred ----cccceeeEEeecCchhhhhccccCCccccccc
Confidence 34567899999999999999999999999976
|
|
| >KOG0646|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.7e-22 Score=229.48 Aligned_cols=229 Identities=18% Similarity=0.268 Sum_probs=197.9
Q ss_pred CCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECC-------
Q psy9598 476 LSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQ------- 548 (1915)
Q Consensus 476 ~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~------- 548 (1915)
.+.|.|++-+|+|.+|+.|+-.|.|++|.+.+|.++..+.+|-..|+||.|+.||.+|+|||.||.|.+|.+.
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~ 160 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADN 160 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeeccccc
Confidence 4789999999999999999999999999999999999999999999999999999999999999999999873
Q ss_pred --CCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEE
Q psy9598 549 --TLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSF 626 (1915)
Q Consensus 549 --tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~f 626 (1915)
+-.+++.+..|+-+|+++...+-+ -..+|+|+|.|.++++||+..+..+.+..+. ..+.|+++
T Consensus 161 ~~~~~p~~~f~~HtlsITDl~ig~Gg--~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp-------------~si~av~l 225 (476)
T KOG0646|consen 161 DHSVKPLHIFSDHTLSITDLQIGSGG--TNARLYTASEDRTIKLWDLSLGVLLLTITFP-------------SSIKAVAL 225 (476)
T ss_pred CCCccceeeeccCcceeEEEEecCCC--ccceEEEecCCceEEEEEeccceeeEEEecC-------------CcceeEEE
Confidence 346788999999999999988743 3579999999999999999999887777776 67899999
Q ss_pred CCCCcEEEEEeCCCeEEEEEecCCC-------------CCceeEEeccCCC--CeeEEEEcCCCCEEEEEeCCCcEEEEE
Q psy9598 627 SPGGLFLATGSGDHHVRVYKMDGVD-------------SPLGILEVEEHSD--KVDSIQWSHSHLRFVSGSRDGTALIWY 691 (1915)
Q Consensus 627 spdg~~Lasgs~Dg~I~IwDl~~~~-------------~~~~i~~l~~h~~--~V~sl~fspdg~~L~sgs~DG~I~IWD 691 (1915)
+|.+..+++|+.+|.|.+.++.+.. ....+..+.||.+ .|+|++++-||.+|++|+.||.|+|||
T Consensus 226 Dpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWd 305 (476)
T KOG0646|consen 226 DPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWD 305 (476)
T ss_pred cccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEe
Confidence 9999999999999999998875332 2234556788988 999999999999999999999999999
Q ss_pred ccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCE
Q psy9598 692 YKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRW 735 (1915)
Q Consensus 692 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~ 735 (1915)
+.+.+++.... ...+.|+.+.+.|--+.
T Consensus 306 i~S~Q~iRtl~----------------~~kgpVtnL~i~~~~~~ 333 (476)
T KOG0646|consen 306 IYSKQCIRTLQ----------------TSKGPVTNLQINPLERG 333 (476)
T ss_pred cchHHHHHHHh----------------hhccccceeEeeccccc
Confidence 99888654221 14566777777654333
|
|
| >KOG0269|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.8e-22 Score=241.63 Aligned_cols=288 Identities=19% Similarity=0.265 Sum_probs=224.9
Q ss_pred cEEEEEEcCCCCEEEEEECCCcEEEEECCCC----cEEEEEeCCC---CCEEEEEEeC-CCCEEEEEeCCCcEEEEECCC
Q psy9598 478 AVFCVLFDKLGEVIVTGADDLLIKLWRARDG----KLLATLRGCS---GEISDIAIDN-RNILLAAGTVDKTIRIWNLQT 549 (1915)
Q Consensus 478 ~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg----~~~~~l~gH~---~~I~~Lafsp-dg~~LaSgs~DgtIrVWDl~t 549 (1915)
.+.+|...++-..|+.++.. .++|+.+... .+...+.+.. -.+..+.|+. +.++||+++..|.|.+||+..
T Consensus 41 ~~nAIs~nr~~~qiv~AGrs-~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk 119 (839)
T KOG0269|consen 41 KANAISVNRDINQIVVAGRS-LLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNK 119 (839)
T ss_pred ccceEeecCCcceeEEeccc-ceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCc
Confidence 34566677888788887765 7888876532 2333332222 2355677864 467999999999999999986
Q ss_pred ---CceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEE
Q psy9598 550 ---LAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSF 626 (1915)
Q Consensus 550 ---g~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~f 626 (1915)
.+.+..|..|...|+++.|++.. ..+|++||+||+|++||++......+.. +....|..+.|
T Consensus 120 ~~rnk~l~~f~EH~Rs~~~ldfh~te---p~iliSGSQDg~vK~~DlR~~~S~~t~~------------~nSESiRDV~f 184 (839)
T KOG0269|consen 120 SIRNKLLTVFNEHERSANKLDFHSTE---PNILISGSQDGTVKCWDLRSKKSKSTFR------------SNSESIRDVKF 184 (839)
T ss_pred cccchhhhHhhhhccceeeeeeccCC---ccEEEecCCCceEEEEeeeccccccccc------------ccchhhhceee
Confidence 56677889999999999999975 4899999999999999999876543332 23467899999
Q ss_pred CCC-CcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeeccc
Q psy9598 627 SPG-GLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMN 705 (1915)
Q Consensus 627 spd-g~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~ 705 (1915)
+|. +..++++...|.+.+||++.. ..+...+.+|.++|.|+.|+|++.+|||||.|+.|+|||+.+.....
T Consensus 185 sp~~~~~F~s~~dsG~lqlWDlRqp--~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~------ 256 (839)
T KOG0269|consen 185 SPGYGNKFASIHDSGYLQLWDLRQP--DRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKP------ 256 (839)
T ss_pred ccCCCceEEEecCCceEEEeeccCc--hhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccc------
Confidence 995 678999999999999999643 34556688999999999999999999999999999999988654221
Q ss_pred ccCCCCccccccccccccEEEEEECCCCCEEEEEEe--cCCeEEEEECCC-CceEEEeeCCCCCeEEEEEccCCCCEEEE
Q psy9598 706 TCLPHTKETSDETNKKIKVTMVAWDASDRWVITAIN--FNFQIKIWDAFN-GDLVQVLKGHTNEVFVLESHPFDSRVLLS 782 (1915)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~--~Dg~I~vwD~~t-g~~i~~l~gH~~~V~sl~~sp~dg~~LaS 782 (1915)
........+|.+|.|-|...+.++.++ .|..|+|||++. .-+..++..|...++.++|-..+...|.+
T Consensus 257 ---------~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s 327 (839)
T KOG0269|consen 257 ---------KHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWS 327 (839)
T ss_pred ---------eeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEe
Confidence 112234578999999999887665543 377899999975 45677889999999999998767889999
Q ss_pred EecCceEEEEECCCCc
Q psy9598 783 AGHDGLIIIWDILSSK 798 (1915)
Q Consensus 783 gs~DG~I~IWdl~s~~ 798 (1915)
++.||+|..-.+.++.
T Consensus 328 ~sKD~tv~qh~~knat 343 (839)
T KOG0269|consen 328 CSKDGTVLQHLFKNAT 343 (839)
T ss_pred ecCccHHHHhhhhccc
Confidence 9999999776665543
|
|
| >KOG1274|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.7e-21 Score=236.17 Aligned_cols=285 Identities=16% Similarity=0.221 Sum_probs=226.3
Q ss_pred eCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCC-ceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEec
Q psy9598 515 RGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTL-APISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKY 593 (1915)
Q Consensus 515 ~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg-~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl 593 (1915)
.+|....+.|+|.++|.+|++++.||.|++|+..+. ..-.++..+...|.+++... .+|++|+.+++|.+|.+
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s------~~f~~~s~~~tv~~y~f 83 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYS------NHFLTGSEQNTVLRYKF 83 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecc------cceEEeeccceEEEeeC
Confidence 368888999999999999999999999999998765 33333433777888887754 69999999999999998
Q ss_pred ccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcC
Q psy9598 594 KLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSH 673 (1915)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fsp 673 (1915)
..+..-..+ ..-..++.+++|+.+|.++|.|+.|-.|++.++.. ......+.+|.++|.+|.|+|
T Consensus 84 ps~~~~~iL------------~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D---~s~~~~lrgh~apVl~l~~~p 148 (933)
T KOG1274|consen 84 PSGEEDTIL------------ARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDD---SSQEKVLRGHDAPVLQLSYDP 148 (933)
T ss_pred CCCCcccee------------eeeeccceEEEEecCCcEEEeecCceeEEEEeccc---cchheeecccCCceeeeeEcC
Confidence 876532111 11136789999999999999999999999999843 344567899999999999999
Q ss_pred CCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCC
Q psy9598 674 SHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFN 753 (1915)
Q Consensus 674 dg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~t 753 (1915)
.+.+||+.+.||.|+|||+.++.+.......... ........++.++|+|+|..+++.+. |+.|++|+..+
T Consensus 149 ~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~--------n~~~~s~i~~~~aW~Pk~g~la~~~~-d~~Vkvy~r~~ 219 (933)
T KOG1274|consen 149 KGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKD--------NEFILSRICTRLAWHPKGGTLAVPPV-DNTVKVYSRKG 219 (933)
T ss_pred CCCEEEEEecCceEEEEEcccchhhhhcccCCcc--------ccccccceeeeeeecCCCCeEEeecc-CCeEEEEccCC
Confidence 9999999999999999999988754432211111 11112556788999999888888887 99999999999
Q ss_pred CceEEEeeC--CCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEE
Q psy9598 754 GDLVQVLKG--HTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCAL 831 (1915)
Q Consensus 754 g~~i~~l~g--H~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Las 831 (1915)
+.....|.. |...+.++.|+| .|.|||+++.||.|.|||+.+... . .....|++++|.|+++.|-+
T Consensus 220 we~~f~Lr~~~~ss~~~~~~wsP-nG~YiAAs~~~g~I~vWnv~t~~~---~--------~~~~~Vc~~aw~p~~n~it~ 287 (933)
T KOG1274|consen 220 WELQFKLRDKLSSSKFSDLQWSP-NGKYIAASTLDGQILVWNVDTHER---H--------EFKRAVCCEAWKPNANAITL 287 (933)
T ss_pred ceeheeecccccccceEEEEEcC-CCcEEeeeccCCcEEEEecccchh---c--------cccceeEEEecCCCCCeeEE
Confidence 998888863 444589999999 899999999999999999987322 1 12367999999999998877
Q ss_pred EeCCCeEEEE
Q psy9598 832 TDSYGHLLVY 841 (1915)
Q Consensus 832 g~~dG~I~Iw 841 (1915)
.+.-|...+|
T Consensus 288 ~~~~g~~~~~ 297 (933)
T KOG1274|consen 288 ITALGTLGVS 297 (933)
T ss_pred EeeccccccC
Confidence 7776655444
|
|
| >KOG0639|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-21 Score=226.62 Aligned_cols=282 Identities=14% Similarity=0.226 Sum_probs=232.2
Q ss_pred CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCC---CceEEEeec--CCCCeEEEEeccCccCCCcEEEEEeCCCeEEE
Q psy9598 516 GCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQT---LAPISVLVG--HQGIITGVNFCPLEVNGFNYLASTSTDGCIGF 590 (1915)
Q Consensus 516 gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~t---g~~~~~l~~--h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~i 590 (1915)
.|..-|.++++|...++++||+ .|.|+|||+.. ..++..|.. ....|.++..+| +++.|++|+.-.+|.|
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~p----dgrtLivGGeastlsi 491 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLP----DGRTLIVGGEASTLSI 491 (705)
T ss_pred ccCcEEEEEEecCCcceeEecC-CCeEEEeeccCCCCCCccccccccCcccceeeeEecC----CCceEEeccccceeee
Confidence 4888888999999999999998 57899999964 234444443 346788999998 5599999999999999
Q ss_pred EecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEE
Q psy9598 591 WKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQ 670 (1915)
Q Consensus 591 WDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~ 670 (1915)
||+.....-....+. ...-..+.++.+||.+..++++.||.|.|||+. ....+..+.+|.+.+.||.
T Consensus 492 WDLAapTprikaelt----------ssapaCyALa~spDakvcFsccsdGnI~vwDLh---nq~~VrqfqGhtDGascId 558 (705)
T KOG0639|consen 492 WDLAAPTPRIKAELT----------SSAPACYALAISPDAKVCFSCCSDGNIAVWDLH---NQTLVRQFQGHTDGASCID 558 (705)
T ss_pred eeccCCCcchhhhcC----------CcchhhhhhhcCCccceeeeeccCCcEEEEEcc---cceeeecccCCCCCceeEE
Confidence 999876432222111 222456778999999999999999999999994 4566788999999999999
Q ss_pred EcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEE
Q psy9598 671 WSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWD 750 (1915)
Q Consensus 671 fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD 750 (1915)
++++|..|.+|+-|.+|+.||++.+.... .......|.++..+|.+.+|++|.. ++.+.|..
T Consensus 559 is~dGtklWTGGlDntvRcWDlregrqlq-----------------qhdF~SQIfSLg~cP~~dWlavGMe-ns~vevlh 620 (705)
T KOG0639|consen 559 ISKDGTKLWTGGLDNTVRCWDLREGRQLQ-----------------QHDFSSQIFSLGYCPTGDWLAVGME-NSNVEVLH 620 (705)
T ss_pred ecCCCceeecCCCccceeehhhhhhhhhh-----------------hhhhhhhheecccCCCccceeeecc-cCcEEEEe
Confidence 99999999999999999999999876221 2235678999999999999999998 88888887
Q ss_pred CCCCceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEE
Q psy9598 751 AFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCA 830 (1915)
Q Consensus 751 ~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~La 830 (1915)
. ++.....+.-|.+.|.+|.|.+ .|+++++.|.|..+..|..--|.. +.. ......|.+|.+|-|.++|+
T Consensus 621 ~-skp~kyqlhlheScVLSlKFa~-cGkwfvStGkDnlLnawrtPyGas--iFq------skE~SsVlsCDIS~ddkyIV 690 (705)
T KOG0639|consen 621 T-SKPEKYQLHLHESCVLSLKFAY-CGKWFVSTGKDNLLNAWRTPYGAS--IFQ------SKESSSVLSCDISFDDKYIV 690 (705)
T ss_pred c-CCccceeecccccEEEEEEecc-cCceeeecCchhhhhhccCccccc--eee------ccccCcceeeeeccCceEEE
Confidence 6 4555667778999999999999 999999999999999999877765 332 23567899999999999999
Q ss_pred EEeCCCeEEEEeC
Q psy9598 831 LTDSYGHLLVYGL 843 (1915)
Q Consensus 831 sg~~dG~I~Iwdl 843 (1915)
+|+.|.+..||.+
T Consensus 691 TGSGdkkATVYeV 703 (705)
T KOG0639|consen 691 TGSGDKKATVYEV 703 (705)
T ss_pred ecCCCcceEEEEE
Confidence 9999999988875
|
|
| >cd05502 Bromo_tif1_like Bromodomain; tif1_like subfamily | Back alignment and domain information |
|---|
Probab=99.88 E-value=1e-22 Score=205.34 Aligned_cols=103 Identities=34% Similarity=0.574 Sum_probs=97.8
Q ss_pred hhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCccccCCCcCCHHHHHHHhcC---CCCCCHHHHHHHHHHHHHHHhhh
Q psy9598 116 FNWKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRG---DNYESPIDFVKDVKRVFHNSRNY 192 (1915)
Q Consensus 116 ~~~~~~~~~il~~l~~~~~~~~F~~pvd~~~~pdY~~iIk~Pmdl~ti~~kl~~---~~Y~~~~~f~~D~~Lif~N~~~y 192 (1915)
...++.|..||.+|++++.++||+.||+. .+|+||++|++||||+||++||++ +.|+++++|..||+|||.||+.|
T Consensus 3 ~~~~~~c~~il~~l~~~~~s~~F~~pv~~-~~p~Y~~iI~~PmdL~tI~~kL~~~~~~~Y~s~~~f~~D~~li~~Na~~y 81 (109)
T cd05502 3 PIDQRKCERLLLELYCHELSLPFHEPVSP-SVPNYYKIIKTPMDLSLIRKKLQPKSPQHYSSPEEFVADVRLMFKNCYKF 81 (109)
T ss_pred HHHHHHHHHHHHHHHhCCCChhhcCCCCC-CCCCHHHHCCCCccHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 35678899999999999999999999999 899999999999999999999998 59999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy9598 193 NQNKRSKIYIMTTRLSEFAEEHLRRLTV 220 (1915)
Q Consensus 193 N~~~~s~i~~~a~~l~~~f~~~~~~~~~ 220 (1915)
|+++ |.++.+|..|++.|+++++.++.
T Consensus 82 N~~~-s~i~~~a~~l~~~f~~~~~~~~p 108 (109)
T cd05502 82 NEED-SEVAQAGKELELFFEEQLKEILP 108 (109)
T ss_pred CCCC-CHHHHHHHHHHHHHHHHHHHHCc
Confidence 9977 99999999999999999998754
|
Tif1 (transcription intermediary factor 1) is a member of the tripartite motif (TRIM) protein family, which is characterized by a particular domain architecture. It functions by recruiting coactivators and/or corepressors to modulate transcription. Vertebrate Tif1-gamma, also labeled E3 ubiquitin-protein ligase TRIM33, plays a role in the control of hematopoiesis. Its homologue in Xenopus laevis, Ectodermin, has been shown to function in germ-layer specification and control of cell growth during embryogenesis. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >KOG2096|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.5e-21 Score=209.51 Aligned_cols=305 Identities=16% Similarity=0.174 Sum_probs=220.7
Q ss_pred EEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCce-----EEEeecCCCCeEEEEeccCccCCCcEEEEEeCCC
Q psy9598 512 ATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAP-----ISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDG 586 (1915)
Q Consensus 512 ~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~-----~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~Dg 586 (1915)
.+|+||.+.|++|+|+.||+.||+++.|++|+||++..... +.. .-.-+..+.+.|.|+. ...++++-...
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~-nve~dhpT~V~FapDc---~s~vv~~~~g~ 155 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQ-NVEYDHPTRVVFAPDC---KSVVVSVKRGN 155 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhc-cccCCCceEEEECCCc---ceEEEEEccCC
Confidence 35789999999999999999999999999999999976322 111 0112355889999965 35666666777
Q ss_pred eEEEEecccCccccceecc-CccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCC
Q psy9598 587 CIGFWKYKLDIDISKTVFH-EPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDK 665 (1915)
Q Consensus 587 tI~iWDl~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~ 665 (1915)
++++|-+..... ....++ .+.........|...|..+-...++.+|++++.|..|.||++. ++.+..+......
T Consensus 156 ~l~vyk~~K~~d-G~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk----Gq~L~~idtnq~~ 230 (420)
T KOG2096|consen 156 KLCVYKLVKKTD-GSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK----GQLLQSIDTNQSS 230 (420)
T ss_pred EEEEEEeeeccc-CCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC----Cceeeeecccccc
Confidence 899997754322 111111 1111122334566778888888899999999999999999994 3445555555566
Q ss_pred eeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCe
Q psy9598 666 VDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQ 745 (1915)
Q Consensus 666 V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~ 745 (1915)
-+..+.||+|+++++++-.--|++|.+--++ ............+.+|...|..++|+++...+++.+. ||.
T Consensus 231 n~~aavSP~GRFia~~gFTpDVkVwE~~f~k--------dG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSk-DG~ 301 (420)
T KOG2096|consen 231 NYDAAVSPDGRFIAVSGFTPDVKVWEPIFTK--------DGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSK-DGK 301 (420)
T ss_pred ccceeeCCCCcEEEEecCCCCceEEEEEecc--------CcchhhhhhhheeccchhheeeeeeCCCcceeEEEec-CCc
Confidence 6778899999999999999999999753221 1112222334567889999999999999999999998 999
Q ss_pred EEEEECCC----C---ceEEEe----eCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCC
Q psy9598 746 IKIWDAFN----G---DLVQVL----KGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGE 814 (1915)
Q Consensus 746 I~vwD~~t----g---~~i~~l----~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~ 814 (1915)
++|||+.- + ..+.+. ....+.-..|+.+| .+..|+.+. ...|.++...+++. ...+. ..|.
T Consensus 302 wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP-~g~~lA~s~-gs~l~~~~se~g~~--~~~~e----~~h~ 373 (420)
T KOG2096|consen 302 WRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSP-SGDSLAVSF-GSDLKVFASEDGKD--YPELE----DIHS 373 (420)
T ss_pred EEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCC-CCcEEEeec-CCceEEEEcccCcc--chhHH----Hhhc
Confidence 99999752 1 222222 12233345899999 888776554 45899999988876 44443 4567
Q ss_pred cceEEEEEcCCCCEEEEEeCCCeEEEEeC
Q psy9598 815 GALFDGKWSPDGTTCALTDSYGHLLVYGL 843 (1915)
Q Consensus 815 ~~V~~vafSpdg~~Lasg~~dG~I~Iwdl 843 (1915)
+.|.+++|+++|+++|+++. ..++|+.-
T Consensus 374 ~~Is~is~~~~g~~~atcGd-r~vrv~~n 401 (420)
T KOG2096|consen 374 TTISSISYSSDGKYIATCGD-RYVRVIRN 401 (420)
T ss_pred CceeeEEecCCCcEEeeecc-eeeeeecC
Confidence 88999999999999998876 67888763
|
|
| >cd05516 Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, specific to animals | Back alignment and domain information |
|---|
Probab=99.88 E-value=8e-23 Score=204.51 Aligned_cols=101 Identities=22% Similarity=0.398 Sum_probs=96.0
Q ss_pred hHHHHHHHHHHHHhcCCC------CCCCCCCCCCCCCCCccccCCCcCCHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHh
Q psy9598 117 NWKNECREVLETLWVCPD------SEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSR 190 (1915)
Q Consensus 117 ~~~~~~~~il~~l~~~~~------~~~F~~pvd~~~~pdY~~iIk~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~Lif~N~~ 190 (1915)
++.+.|..||+.|+++.+ ++||.+||++.++||||++|++||||+||++||++|.|.++++|..||+|||.||+
T Consensus 1 ~l~~~~~~il~~v~~~~d~~g~~~s~~F~~~p~~~~~pdYy~iI~~Pmdl~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~ 80 (107)
T cd05516 1 ELTKKMNKIVDVVIKYKDSDGRQLAEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLEDLEKDVMLLCQNAQ 80 (107)
T ss_pred CHHHHHHHHHHHHHhhhCcCCCEeeHHhhcCCCcccCCCHHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHH
Confidence 367889999999999887 89999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy9598 191 NYNQNKRSKIYIMTTRLSEFAEEHLRRL 218 (1915)
Q Consensus 191 ~yN~~~~s~i~~~a~~l~~~f~~~~~~~ 218 (1915)
.||+++ |.||.+|..|+++|+++++++
T Consensus 81 ~yN~~~-s~i~~~a~~l~~~f~~~~~~~ 107 (107)
T cd05516 81 TFNLEG-SLIYEDSIVLQSVFKSARQKI 107 (107)
T ss_pred HHCCCC-CHHHHHHHHHHHHHHHHHhcC
Confidence 999977 999999999999999998753
|
SNF2L2 (SNF2-alpha) or SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 is a global transcriptional activator, which cooperates with nuclear hormone receptors to boost transcriptional activation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >KOG2445|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.3e-20 Score=208.27 Aligned_cols=286 Identities=21% Similarity=0.357 Sum_probs=213.1
Q ss_pred ecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCC----cEEEEEeCCCCCEEEEEEeC--CCCEEEEEeCCCcEEEE
Q psy9598 472 NLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDG----KLLATLRGCSGEISDIAIDN--RNILLAAGTVDKTIRIW 545 (1915)
Q Consensus 472 l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg----~~~~~l~gH~~~I~~Lafsp--dg~~LaSgs~DgtIrVW 545 (1915)
..||.+-|+|+.|++.|+++|||+.|++|+|||..+. .+....+.|.+.|..|.|.+ -|+.+|++|.|++|.||
T Consensus 9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW 88 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIW 88 (361)
T ss_pred ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeee
Confidence 4589999999999999999999999999999996433 56677899999999999965 48999999999999999
Q ss_pred ECC---------CCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCcc-ccccccC
Q psy9598 546 NLQ---------TLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPV-MFNERIR 615 (1915)
Q Consensus 546 Dl~---------tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~-~~~~~~~ 615 (1915)
.-. ......++....+.|++|.|.|.. -|-.|++++.||+|+||+.-....+..-.+.... .......
T Consensus 89 EE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~h--lGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~ 166 (361)
T KOG2445|consen 89 EEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKH--LGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPG 166 (361)
T ss_pred eecccccccccceeEEEEEeecCCcceeEEEecchh--cceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcc
Confidence 752 123456677788999999999976 5688999999999999987655433332222111 1112233
Q ss_pred CCCCceEEEEECCC---CcEEEEEeCC-----CeEEEEEecCCC-CCceeEEeccCCCCeeEEEEcCCC----CEEEEEe
Q psy9598 616 PGNAHILCSSFSPG---GLFLATGSGD-----HHVRVYKMDGVD-SPLGILEVEEHSDKVDSIQWSHSH----LRFVSGS 682 (1915)
Q Consensus 616 ~~~~~V~~l~fspd---g~~Lasgs~D-----g~I~IwDl~~~~-~~~~i~~l~~h~~~V~sl~fspdg----~~L~sgs 682 (1915)
.+.....|++|++. ..+||+|+.+ +.+.||...... ....+.++.+|+.+|++|+|.|+- ..|++++
T Consensus 167 ~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~ 246 (361)
T KOG2445|consen 167 KNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVAT 246 (361)
T ss_pred cccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEee
Confidence 45567889999985 4578888776 578899875433 556777889999999999999973 4799999
Q ss_pred CCCcEEEEEccCCceEEee-----ecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECC---CC
Q psy9598 683 RDGTALIWYYKCSQWRFIR-----LDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAF---NG 754 (1915)
Q Consensus 683 ~DG~I~IWDl~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~---tg 754 (1915)
.|| |+||.+......... ......+ ..........|.+.|..+.|+-.|..|+++|. ||.|++|-.. ..
T Consensus 247 kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l-~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGd-DG~VRLWkany~n~~ 323 (361)
T KOG2445|consen 247 KDG-VRIFKVKVARSAIEEEEVLAPDLMTDL-PVEKVSELDDHNGEVWRVRWNMTGTILSSTGD-DGCVRLWKANYNNLW 323 (361)
T ss_pred cCc-EEEEEEeeccchhhhhcccCCCCcccc-ceEEeeeccCCCCceEEEEEeeeeeEEeecCC-Cceeeehhhhhhhhh
Confidence 999 999998742210000 0000001 11223456789999999999999999999998 9999999754 23
Q ss_pred ceEEEeeC
Q psy9598 755 DLVQVLKG 762 (1915)
Q Consensus 755 ~~i~~l~g 762 (1915)
+|+..+..
T Consensus 324 kC~sv~~~ 331 (361)
T KOG2445|consen 324 KCTSVLKA 331 (361)
T ss_pred eeeeEEec
Confidence 45555543
|
|
| >cd05509 Bromo_gcn5_like Bromodomain; Gcn5_like subfamily | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-22 Score=202.89 Aligned_cols=100 Identities=34% Similarity=0.578 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCccccCCCcCCHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhhcCCCC
Q psy9598 118 WKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQNKR 197 (1915)
Q Consensus 118 ~~~~~~~il~~l~~~~~~~~F~~pvd~~~~pdY~~iIk~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~Lif~N~~~yN~~~~ 197 (1915)
+..+|..||+.|++|+.++||+.||+...+|+||++|++||||+||++||.++.|.|+++|..||+|||.||+.||+++
T Consensus 2 ~~~~~~~il~~l~~~~~a~~F~~pv~~~~~p~Y~~~I~~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~~~- 80 (101)
T cd05509 2 LYTQLKKVLDSLKNHKSAWPFLEPVDKEEAPDYYDVIKKPMDLSTMEEKLENGYYVTLEEFVADLKLIFDNCRLYNGPD- 80 (101)
T ss_pred hHHHHHHHHHHHHhCCCchhhcCCCChhhcCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCC-
Confidence 5688999999999999999999999998999999999999999999999999999999999999999999999999976
Q ss_pred CHHHHHHHHHHHHHHHHHHHH
Q psy9598 198 SKIYIMTTRLSEFAEEHLRRL 218 (1915)
Q Consensus 198 s~i~~~a~~l~~~f~~~~~~~ 218 (1915)
|.++.+|..|++.|+++++++
T Consensus 81 s~~~~~a~~l~~~f~~~~~~~ 101 (101)
T cd05509 81 TEYYKCANKLEKFFWKKLKEL 101 (101)
T ss_pred CHHHHHHHHHHHHHHHHHhhC
Confidence 999999999999999998864
|
Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >KOG0321|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.6e-21 Score=230.73 Aligned_cols=302 Identities=17% Similarity=0.213 Sum_probs=223.1
Q ss_pred EEEcC---CCCEEEEEECCCcEEEEECCCCcE------EEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCce
Q psy9598 482 VLFDK---LGEVIVTGADDLLIKLWRARDGKL------LATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAP 552 (1915)
Q Consensus 482 vafsp---dg~~LaTGs~Dg~I~IWd~~tg~~------~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~ 552 (1915)
+.|++ ....||.+..||.|.++|...... +..+..|.+.|.++.|-|....|++++.|.+|++||+.++.+
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l 134 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRL 134 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeecccee
Confidence 55653 457899999999999999865432 345568999999999999778999999999999999999988
Q ss_pred EEE--eecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceecc-----------Ccc----ccccccC
Q psy9598 553 ISV--LVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFH-----------EPV----MFNERIR 615 (1915)
Q Consensus 553 ~~~--l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~-----------~~~----~~~~~~~ 615 (1915)
+.. +.||.+.|.+++|.|. +...|++|+.||.|.|||++-...-....+. .+. .......
T Consensus 135 ~G~~~~~GH~~SvkS~cf~~~---n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~k 211 (720)
T KOG0321|consen 135 VGGRLNLGHTGSVKSECFMPT---NPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWK 211 (720)
T ss_pred ecceeecccccccchhhhccC---CCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccc
Confidence 877 8999999999999995 4589999999999999999765411100000 000 1112233
Q ss_pred CCCCceEE---EEECCCCcEEEEEeC-CCeEEEEEecCCCC-----CceeEEeccC---CCCeeEEEEcCCCCEEEEEeC
Q psy9598 616 PGNAHILC---SSFSPGGLFLATGSG-DHHVRVYKMDGVDS-----PLGILEVEEH---SDKVDSIQWSHSHLRFVSGSR 683 (1915)
Q Consensus 616 ~~~~~V~~---l~fspdg~~Lasgs~-Dg~I~IwDl~~~~~-----~~~i~~l~~h---~~~V~sl~fspdg~~L~sgs~ 683 (1915)
++...|.+ +.+..|...||+++. |+.|+|||++.... +..+..+..| .-.+.++.....|.+|++.+.
T Consensus 212 A~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCt 291 (720)
T KOG0321|consen 212 AASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCT 291 (720)
T ss_pred cccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEec
Confidence 44455555 666678888888887 99999999975432 2222233334 346788888888999998889
Q ss_pred CCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCc-eEEEeeC
Q psy9598 684 DGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGD-LVQVLKG 762 (1915)
Q Consensus 684 DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~-~i~~l~g 762 (1915)
|++|++|++.+....... ...+ .........-..+|++.+|++|+. |...++|.+.+.+ ....+.|
T Consensus 292 D~sIy~ynm~s~s~sP~~-----~~sg-------~~~~sf~vks~lSpd~~~l~SgSs-d~~ayiw~vs~~e~~~~~l~G 358 (720)
T KOG0321|consen 292 DNSIYFYNMRSLSISPVA-----EFSG-------KLNSSFYVKSELSPDDCSLLSGSS-DEQAYIWVVSSPEAPPALLLG 358 (720)
T ss_pred CCcEEEEeccccCcCchh-----hccC-------cccceeeeeeecCCCCceEeccCC-CcceeeeeecCccCChhhhhC
Confidence 999999998765421110 0000 001112233457899999999999 9999999998754 4667789
Q ss_pred CCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCcc
Q psy9598 763 HTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQ 799 (1915)
Q Consensus 763 H~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~ 799 (1915)
|.-.|++++|.|..-.-++|++.|.+++||++..+-.
T Consensus 359 ht~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l~ 395 (720)
T KOG0321|consen 359 HTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNGLE 395 (720)
T ss_pred cceEEEEEeeccccCCCceeeccCcceEEEeccCchh
Confidence 9999999999996666788899999999999966543
|
|
| >KOG0647|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.8e-21 Score=209.58 Aligned_cols=259 Identities=17% Similarity=0.215 Sum_probs=210.0
Q ss_pred ccccCCCeEEEecccCCceeeeEEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEe
Q psy9598 448 YSGPLSRSLMISSHKYSNLRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAID 527 (1915)
Q Consensus 448 ~tg~~d~~~~i~~~~~~~~~~~~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafs 527 (1915)
..|+.|+++++|.........-+....|.++|.|++|+.+|..+++|+.|+.+++||+.+++ +..+..|.++|.++.|-
T Consensus 44 ~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q-~~~v~~Hd~pvkt~~wv 122 (347)
T KOG0647|consen 44 AAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ-VSQVAAHDAPVKTCHWV 122 (347)
T ss_pred EecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC-eeeeeecccceeEEEEe
Confidence 36889999999987665444446777899999999999999999999999999999999995 45567799999999998
Q ss_pred CCCC--EEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceecc
Q psy9598 528 NRNI--LLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFH 605 (1915)
Q Consensus 528 pdg~--~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~ 605 (1915)
+... .|++||.|.+|+.||++...++.++. -...|.++..-. .+++.+..+..|.+|++..+.......
T Consensus 123 ~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~Dv~~------pm~vVata~r~i~vynL~n~~te~k~~-- 193 (347)
T KOG0647|consen 123 PGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAADVLY------PMAVVATAERHIAVYNLENPPTEFKRI-- 193 (347)
T ss_pred cCCCcceeEecccccceeecccCCCCeeeeee-ccceeeehhccC------ceeEEEecCCcEEEEEcCCCcchhhhh--
Confidence 8765 89999999999999999999998886 345667766543 689999999999999998764322211
Q ss_pred CccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCC---------CeeEEEEcCCCC
Q psy9598 606 EPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSD---------KVDSIQWSHSHL 676 (1915)
Q Consensus 606 ~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~---------~V~sl~fspdg~ 676 (1915)
..+..-.+.|++...+....+.|+-.|.+.|..++... +..-+.+..|.. .|++|+|+|...
T Consensus 194 --------~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~-~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hg 264 (347)
T KOG0647|consen 194 --------ESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPN-PKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHG 264 (347)
T ss_pred --------cCcccceeeEEEEEecCCceEeeeecceEEEEecCCCC-ccCceeEEEeccCCCCCCceEEecceEeecccc
Confidence 12234678999999998888999999999999995432 245556677763 578899999999
Q ss_pred EEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEe
Q psy9598 677 RFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAIN 741 (1915)
Q Consensus 677 ~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~ 741 (1915)
.|++++.||++.+||-.....+ .....+..+|+|.+|+.+|.+++.+.+
T Consensus 265 tlvTaGsDGtf~FWDkdar~kL----------------k~s~~~~qpItcc~fn~~G~ifaYA~g 313 (347)
T KOG0647|consen 265 TLVTAGSDGTFSFWDKDARTKL----------------KTSETHPQPITCCSFNRNGSIFAYALG 313 (347)
T ss_pred eEEEecCCceEEEecchhhhhh----------------hccCcCCCccceeEecCCCCEEEEEee
Confidence 9999999999999997654421 122347789999999999999998877
|
|
| >cd05507 Bromo_brd8_like Bromodomain, brd8_like subgroup | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.3e-22 Score=202.27 Aligned_cols=102 Identities=28% Similarity=0.476 Sum_probs=98.3
Q ss_pred hhhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCccccccCccchhhHHhhhcCCCCCCHHHHHHHHHHHHHHhhhhcCC
Q psy9598 1531 FNWKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQN 1610 (1915)
Q Consensus 1531 ~~~~~~~~~ll~~l~~~~~s~~F~~pv~~~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~Dv~lif~Na~~yN~~ 1610 (1915)
..|++.|..+++.|++++.++||+.||+..++|+||++|++||||+||++||++|.|.++.+|..||+|||+||+.||++
T Consensus 2 ~~~~~~~~~il~~l~~~~~a~~F~~pV~~~~~p~Y~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~ 81 (104)
T cd05507 2 RAWKKAILLVYRTLASHRYASVFLKPVTEDIAPGYHSVVYRPMDLSTIKKNIENGTIRSTAEFQRDVLLMFQNAIMYNSS 81 (104)
T ss_pred hHHHHHHHHHHHHHHcCCCCHhhcCCCCccccCCHHHHhCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHH
Q psy9598 1611 KRSKIYIMTTRLSEFAEEHLRRL 1633 (1915)
Q Consensus 1611 ~~s~i~~~a~~l~~~f~~~~~~~ 1633 (1915)
+ |.+|.+|..|++.|.++++.+
T Consensus 82 ~-s~v~~~A~~l~~~~~~~~~~~ 103 (104)
T cd05507 82 D-HDVYLMAVEMQREVMSQIQQL 103 (104)
T ss_pred C-CHHHHHHHHHHHHHHHHhhcc
Confidence 8 999999999999999888754
|
In mammals, brd8 (bromodomain containing 8) interacts with the thyroid hormone receptor in a ligand-dependent fashion and enhances thyroid hormone-dependent activation from thyroid response elements. Brd8 is thought to be a nuclear receptor coactivator. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >cd05497 Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily, repeat I | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.4e-22 Score=202.39 Aligned_cols=100 Identities=32% Similarity=0.585 Sum_probs=93.7
Q ss_pred hhHHHHHHHHHHHHcCCCCCCCCCCCCCC--CCCCccccccCccchhhHHhhhcCCCCCCHHHHHHHHHHHHHHhhhhcC
Q psy9598 1532 NWKNECREVLETLWVCPDSEPFRKPVDKL--DHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQ 1609 (1915)
Q Consensus 1532 ~~~~~~~~ll~~l~~~~~s~~F~~pv~~~--~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~Dv~lif~Na~~yN~ 1609 (1915)
.++-.+..||..|++++.|+||+.|||.. ++||||+||++||||+||++||+++.|.++++|..||+|||.||+.||+
T Consensus 5 q~~~~~~~il~~l~~~~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~yN~ 84 (107)
T cd05497 5 QLQYLLKVVLKALWKHKFAWPFQQPVDAVKLNLPDYHKIIKTPMDLGTIKKRLENNYYWSASECIQDFNTMFTNCYIYNK 84 (107)
T ss_pred HHHHHHHHHHHHHHhCCcCccccCCCCcccccCCcHHHHHcCcccHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 34455678999999999999999999954 7999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Q psy9598 1610 NKRSKIYIMTTRLSEFAEEHLRR 1632 (1915)
Q Consensus 1610 ~~~s~i~~~a~~l~~~f~~~~~~ 1632 (1915)
++ |.+|.+|..|+++|++++++
T Consensus 85 ~~-s~i~~~A~~l~~~f~~~l~~ 106 (107)
T cd05497 85 PG-DDVVLMAQTLEKLFLQKLAQ 106 (107)
T ss_pred CC-CHHHHHHHHHHHHHHHHHHc
Confidence 88 99999999999999999875
|
Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >cd05510 Bromo_SPT7_like Bromodomain; SPT7_like subfamily | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.2e-22 Score=203.69 Aligned_cols=105 Identities=29% Similarity=0.449 Sum_probs=99.5
Q ss_pred chhhHHHHHHHHHHHHcC-CCCCCCCCCCCCCCCCCccccccCccchhhHHhhhcCCCCCCHHHHHHHHHHHHHHhhhhc
Q psy9598 1530 PFNWKNECREVLETLWVC-PDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYN 1608 (1915)
Q Consensus 1530 ~~~~~~~~~~ll~~l~~~-~~s~~F~~pv~~~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~Dv~lif~Na~~yN 1608 (1915)
..++.++|.+||+.|+++ +.|+||+.||++.++||||++|++||||+||++||++|.|.|+++|.+||+|||.||+.||
T Consensus 5 ~~~~~~~~~~il~~l~~~~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~Li~~N~~~yN 84 (112)
T cd05510 5 QEEFYESLDKVLNELKTYTEHSTPFLTKVSKREAPDYYDIIKKPMDLGTMLKKLKNLQYKSKAEFVDDLNLIWKNCLLYN 84 (112)
T ss_pred HHHHHHHHHHHHHHHHhcCccccchhcCCChhhcCCHHHHhcCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 467889999999999999 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy9598 1609 QNKRSKIYIMTTRLSEFAEEHLRRLT 1634 (1915)
Q Consensus 1609 ~~~~s~i~~~a~~l~~~f~~~~~~~~ 1634 (1915)
+++++.++.+|..|++.|+.++..|+
T Consensus 85 ~~~s~~~~~~A~~l~~~~~~~~~~~~ 110 (112)
T cd05510 85 SDPSHPLRRHANFMKKKAEHLLKLIP 110 (112)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence 98745889999999999999998774
|
SPT7 is a yeast protein that functions as a component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA, and SLIK. SAGA is involved in the RNA polymerase II-dependent transcriptional regulation of about 10% of all yeast genes. The SPT7 bromodomain has been shown to weakly interact with acetylated histone H3, but not H4. The human representative of this subfamily is cat eye syndrome critical region protein 2 (CECR2). Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >cd05506 Bromo_plant1 Bromodomain, uncharacterized subfamily specific to plants | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.4e-22 Score=201.48 Aligned_cols=96 Identities=33% Similarity=0.545 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCCCC--CCCCCccccCCCcCCHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhhcCCC
Q psy9598 119 KNECREVLETLWVCPDSEPFRKPVDK--LDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQNK 196 (1915)
Q Consensus 119 ~~~~~~il~~l~~~~~~~~F~~pvd~--~~~pdY~~iIk~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~Lif~N~~~yN~~~ 196 (1915)
++.|..||+.|++++.+++|..||+. .++|+||++|++||||+||++||+++.|.++++|.+||+|||.||+.||+++
T Consensus 2 ~~~c~~il~~l~~~~~~~~F~~pv~~~~~~~p~Y~~~I~~P~dl~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~yn~~~ 81 (99)
T cd05506 2 MKQCGTLLRKLMKHKWGWVFNAPVDVVALGLPDYFDIIKKPMDLGTVKKKLEKGEYSSPEEFAADVRLTFANAMRYNPPG 81 (99)
T ss_pred HHHHHHHHHHHHhCCCCccccCCCCccccCCCCHHHHHcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 57899999999999999999999994 4799999999999999999999999999999999999999999999999976
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q psy9598 197 RSKIYIMTTRLSEFAEEHL 215 (1915)
Q Consensus 197 ~s~i~~~a~~l~~~f~~~~ 215 (1915)
|.+|.+|..|++.|+++|
T Consensus 82 -s~i~~~a~~l~~~fe~~w 99 (99)
T cd05506 82 -NDVHTMAKELLKIFETRW 99 (99)
T ss_pred -CHHHHHHHHHHHHHHHhC
Confidence 999999999999999986
|
Might function as a global transcription factor. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >cd05513 Bromo_brd7_like Bromodomain, brd7_like subgroup | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.6e-22 Score=197.75 Aligned_cols=95 Identities=23% Similarity=0.403 Sum_probs=90.1
Q ss_pred hHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCccccCCCcCCHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhhcCCC
Q psy9598 117 NWKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQNK 196 (1915)
Q Consensus 117 ~~~~~~~~il~~l~~~~~~~~F~~pvd~~~~pdY~~iIk~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~Lif~N~~~yN~~~ 196 (1915)
++++.|..||+.|++++.+++|+.||+...+||||++|++||||+||++||+++.|.|+++|.+||+|||.||++||+++
T Consensus 1 ~l~~~l~~il~~l~~~~~~~~F~~PV~~~~~pdY~~vIk~PmDL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~ 80 (98)
T cd05513 1 PLQKALEQLIRQLQRKDPHGFFAFPVTDFIAPGYSSIIKHPMDFSTMKEKIKNNDYQSIEEFKDDFKLMCENAMKYNKPD 80 (98)
T ss_pred CHHHHHHHHHHHHHcCCccccccCcCCccccccHHHHHcCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 36788999999999999999999999999999999999999999999999999999999999999999999999999977
Q ss_pred CCHHHHHHHHHHHHHH
Q psy9598 197 RSKIYIMTTRLSEFAE 212 (1915)
Q Consensus 197 ~s~i~~~a~~l~~~f~ 212 (1915)
|.+|++|.+|...-.
T Consensus 81 -s~~~~~A~~L~~~~~ 95 (98)
T cd05513 81 -TIYYKAAKKLLHSGM 95 (98)
T ss_pred -CHHHHHHHHHHHhhh
Confidence 999999999976543
|
The BRD7 gene encodes a nuclear protein that has been shown to inhibit cell growth and the progression of the cell cycle by regulating cell-cycle genes at the transcriptional level. BRD7 has been identified as a gene involved in nasopharyngeal carcinoma. The protein interacts with acetylated histone H3 via its bromodomain. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >KOG0650|consensus | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.2e-21 Score=224.47 Aligned_cols=320 Identities=17% Similarity=0.194 Sum_probs=231.2
Q ss_pred EEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCC--EEEEEeCCCcEEEEEC
Q psy9598 470 YVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNI--LLAAGTVDKTIRIWNL 547 (1915)
Q Consensus 470 ~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~--~LaSgs~DgtIrVWDl 547 (1915)
..+.||++.|.||..+|.|.+||+|+.||+|+||.+.||.|+.++. ..+.|.||+|+|.+. +||++- ...+.|-+.
T Consensus 394 lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~-~~~~~ivnp 471 (733)
T KOG0650|consen 394 LVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAV-GECVLIVNP 471 (733)
T ss_pred eeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEe-cCceEEeCc
Confidence 4678999999999999999999999999999999999999999887 456899999999754 445444 334555554
Q ss_pred CCCceEEEeecCCCCeEEEEeccCccCCCcEEEEE----eCCCeEEEEecccCccccceeccCccccccccCCCCCceEE
Q psy9598 548 QTLAPISVLVGHQGIITGVNFCPLEVNGFNYLAST----STDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILC 623 (1915)
Q Consensus 548 ~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sg----s~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~ 623 (1915)
.-|..+.... + ..+|+++ .-++.+..|.-......... ......|...|..
T Consensus 472 ~~G~~~e~~~--t---------------~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~--------v~~~I~~~k~i~~ 526 (733)
T KOG0650|consen 472 IFGDRLEVGP--T---------------KELLASAPNESEPDAAVVTWSRASLDELEKG--------VCIVIKHPKSIRQ 526 (733)
T ss_pred cccchhhhcc--h---------------hhhhhcCCCccCCcccceeechhhhhhhccc--------eEEEEecCCccce
Confidence 3332111100 0 0122222 23556777754422111100 0111235578999
Q ss_pred EEECCCCcEEEEEeCC---CeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEe
Q psy9598 624 SSFSPGGLFLATGSGD---HHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFI 700 (1915)
Q Consensus 624 l~fspdg~~Lasgs~D---g~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~ 700 (1915)
+.|+..|.+|++...+ ..|.|+++...... ..+.-..+.|.++.|+|...+|++++. ..|+|||+..+..+.
T Consensus 527 vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ---~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvK- 601 (733)
T KOG0650|consen 527 VTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQ---SPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVK- 601 (733)
T ss_pred eeeecCCceEEEeccCCCcceEEEEeccccccc---CchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHH-
Confidence 9999999999987664 46889998543322 234445678999999999999988876 679999998654221
Q ss_pred eecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCC-CceEEEeeCCCCCeEEEEEccCCCCE
Q psy9598 701 RLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFN-GDLVQVLKGHTNEVFVLESHPFDSRV 779 (1915)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~t-g~~i~~l~gH~~~V~sl~~sp~dg~~ 779 (1915)
........|..++++|.|..|++++. |+.+..||+.- .++.+++.-|...|++|+||+ .-.+
T Consensus 602 ---------------kL~tg~kwiS~msihp~GDnli~gs~-d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~-ryPL 664 (733)
T KOG0650|consen 602 ---------------KLLTGSKWISSMSIHPNGDNLILGSY-DKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHK-RYPL 664 (733)
T ss_pred ---------------HHhcCCeeeeeeeecCCCCeEEEecC-CCeeEEEEcccCcchhHHhhhhhhhhhhhhhcc-ccce
Confidence 12234567899999999999999998 99999999974 467888999999999999999 8889
Q ss_pred EEEEecCceEEEEECCC------CccccceeeeeeecCC---CCcceEEEEEcCCCCEEEEEeCCCeEEEE
Q psy9598 780 LLSAGHDGLIIIWDILS------SKQRGYKWFHNIVEGQ---GEGALFDGKWSPDGTTCALTDSYGHLLVY 841 (1915)
Q Consensus 780 LaSgs~DG~I~IWdl~s------~~~~~~~~~~~~~~~~---~~~~V~~vafSpdg~~Lasg~~dG~I~Iw 841 (1915)
|++|+.||++.|+.-.- .-. +..+. .+.++ ....|.++.|+|...+|++++.||+|++|
T Consensus 665 fas~sdDgtv~Vfhg~VY~Dl~qnpl--iVPlK-~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 665 FASGSDDGTVIVFHGMVYNDLLQNPL--IVPLK-RLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred eeeecCCCcEEEEeeeeehhhhcCCc--eEeee-eccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 99999999999985321 111 12221 12222 12458999999999999999999999998
|
|
| >KOG1538|consensus | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.8e-20 Score=221.93 Aligned_cols=273 Identities=18% Similarity=0.331 Sum_probs=218.4
Q ss_pred cEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEe-
Q psy9598 478 AVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVL- 556 (1915)
Q Consensus 478 ~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l- 556 (1915)
.|+.++|-|||..|+.+..+ .+.|||+..|.++.+++||...|+|++|+.||..+|||+.|..|.||+-.- -..+
T Consensus 14 ci~d~afkPDGsqL~lAAg~-rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~kl---EG~Lk 89 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGS-RLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL---EGILK 89 (1081)
T ss_pred chheeEECCCCceEEEecCC-EEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccc---cceee
Confidence 89999999999998888655 899999999999999999999999999999999999999999999998642 2222
Q ss_pred ecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEE
Q psy9598 557 VGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATG 636 (1915)
Q Consensus 557 ~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasg 636 (1915)
..|.+.|.|+.|+|.. +.|++++-. ..-+|......... . .....+.|++|..||.+|+.|
T Consensus 90 YSH~D~IQCMsFNP~~----h~LasCsLs-dFglWS~~qK~V~K-~-------------kss~R~~~CsWtnDGqylalG 150 (1081)
T KOG1538|consen 90 YSHNDAIQCMSFNPIT----HQLASCSLS-DFGLWSPEQKSVSK-H-------------KSSSRIICCSWTNDGQYLALG 150 (1081)
T ss_pred eccCCeeeEeecCchH----HHhhhcchh-hccccChhhhhHHh-h-------------hhheeEEEeeecCCCcEEEEe
Confidence 3699999999999965 788888764 35678655432111 1 123678999999999999999
Q ss_pred eCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCC-----CEEEEEeCCCcEEEEEccCCceEEeeecccccCCCC
Q psy9598 637 SGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSH-----LRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHT 711 (1915)
Q Consensus 637 s~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg-----~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~ 711 (1915)
-.+|+|.|-+-. ......+....|.+.+|++|+|+|.. ..+++.....++.++.+.....
T Consensus 151 ~~nGTIsiRNk~-gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~I-------------- 215 (1081)
T KOG1538|consen 151 MFNGTISIRNKN-GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQI-------------- 215 (1081)
T ss_pred ccCceEEeecCC-CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceee--------------
Confidence 999999998763 23334444556678899999999874 3677777777777776653321
Q ss_pred ccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEE
Q psy9598 712 KETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIII 791 (1915)
Q Consensus 712 ~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~I 791 (1915)
...........|+.+.++|.|++.|++ |+.+++|. +.|-.+.++.....+|+.++.+| ++..++.|+.||+|-.
T Consensus 216 ---gk~r~L~FdP~CisYf~NGEy~LiGGs-dk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~P-NsQ~v~~GCqDGTiAC 289 (1081)
T KOG1538|consen 216 ---GKDRALNFDPCCISYFTNGEYILLGGS-DKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKP-NSQYVVVGCQDGTIAC 289 (1081)
T ss_pred ---cccccCCCCchhheeccCCcEEEEccC-CCceEEEe-ecCeEEeeccccceeEEEEEEcc-CCceEEEEEccCeeeh
Confidence 111223344568899999999999999 99999986 46778888877888999999999 9999999999999999
Q ss_pred EEC
Q psy9598 792 WDI 794 (1915)
Q Consensus 792 Wdl 794 (1915)
|++
T Consensus 290 yNl 292 (1081)
T KOG1538|consen 290 YNL 292 (1081)
T ss_pred hhh
Confidence 886
|
|
| >KOG0264|consensus | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.2e-21 Score=222.54 Aligned_cols=267 Identities=20% Similarity=0.337 Sum_probs=210.4
Q ss_pred cCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCC-CcEEEEE
Q psy9598 558 GHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPG-GLFLATG 636 (1915)
Q Consensus 558 ~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspd-g~~Lasg 636 (1915)
.|.+.|+.+.+.|. +..++++++..+.|.|||............ .......+.+|...-++++|++. ...|++|
T Consensus 122 ~h~gEVnRaRymPQ---np~iVAt~t~~~dv~Vfd~tk~~s~~~~~~--~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~ 196 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQ---NPNIVATKTSSGDVYVFDYTKHPSKPKASG--ECRPDLRLKGHEKEGYGLSWNRQQEGTLLSG 196 (422)
T ss_pred cCCccchhhhhCCC---CCcEEEecCCCCCEEEEEeccCCCcccccc--cCCCceEEEeecccccccccccccceeEeec
Confidence 59999999999995 458899999999999999876543322211 22233355667666788999985 3479999
Q ss_pred eCCCeEEEEEecCCCC----CceeEEeccCCCCeeEEEEcCCC-CEEEEEeCCCcEEEEEccCCceEEeeecccccCCCC
Q psy9598 637 SGDHHVRVYKMDGVDS----PLGILEVEEHSDKVDSIQWSHSH-LRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHT 711 (1915)
Q Consensus 637 s~Dg~I~IwDl~~~~~----~~~i~~l~~h~~~V~sl~fspdg-~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~ 711 (1915)
+.|+.|.+||+..... ......+.+|...|..++|++-. .+|++++.|+.+.|||++++. .
T Consensus 197 ~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~--------------~ 262 (422)
T KOG0264|consen 197 SDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNT--------------S 262 (422)
T ss_pred cCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCC--------------C
Confidence 9999999999965433 34455688999999999999864 478899999999999999632 1
Q ss_pred ccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCC-CceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEE
Q psy9598 712 KETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFN-GDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLII 790 (1915)
Q Consensus 712 ~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~t-g~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~ 790 (1915)
........|...|+|++|+|-+.+|+++++.|++|.+||+++ ..+++++.+|...|++|.|+|....+|||+|.|+.+.
T Consensus 263 ~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~ 342 (422)
T KOG0264|consen 263 KPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLN 342 (422)
T ss_pred CCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEE
Confidence 122334568999999999998887777666699999999997 4679999999999999999998899999999999999
Q ss_pred EEECCCCcccccee---------eeeeecCCCCcceEEEEEcCCCC-EEEEEeCCCeEEEEeCCC
Q psy9598 791 IWDILSSKQRGYKW---------FHNIVEGQGEGALFDGKWSPDGT-TCALTDSYGHLLVYGLGG 845 (1915)
Q Consensus 791 IWdl~s~~~~~~~~---------~~~~~~~~~~~~V~~vafSpdg~-~Lasg~~dG~I~Iwdl~s 845 (1915)
|||+..-.. .+. =.-++.++|.+.|.++.|+|... .|++++.|+.+.||.+..
T Consensus 343 vWDls~ig~--eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 343 VWDLSRIGE--EQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred EEecccccc--ccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 999965322 110 00145678889999999999765 577889999999999874
|
|
| >cd05528 Bromo_AAA Bromodomain; sub-family co-occurring with AAA domains | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.8e-22 Score=201.33 Aligned_cols=103 Identities=29% Similarity=0.422 Sum_probs=97.6
Q ss_pred hHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCccccCCCcCCHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhhcCCC
Q psy9598 117 NWKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQNK 196 (1915)
Q Consensus 117 ~~~~~~~~il~~l~~~~~~~~F~~pvd~~~~pdY~~iIk~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~Lif~N~~~yN~~~ 196 (1915)
+++..|..|++.|++++.++||.+|||..++||||++|++||||+||++||++++|.|+++|.+||+|||.||+.||+++
T Consensus 3 ~lr~~L~~il~~l~~~~~~~~F~~pv~~~~~pdY~~vI~~PmdL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN~~~ 82 (112)
T cd05528 3 ELRLFLRDVLKRLASDKRFNAFTKPVDEEEVPDYYEIIKQPMDLQTILQKLDTHQYLTAKDFLKDIDLIVTNALEYNPDR 82 (112)
T ss_pred HHHHHHHHHHHHHHhCCCchhhcCCCCccccCcHHHHHcCCCCHHHHHHHHcCCCcCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 46778999999999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred ---CCHHHHHHHHHHHHHHHHHHHHH
Q psy9598 197 ---RSKIYIMTTRLSEFAEEHLRRLT 219 (1915)
Q Consensus 197 ---~s~i~~~a~~l~~~f~~~~~~~~ 219 (1915)
++.|+.+|..|++.|.+++..+.
T Consensus 83 s~~~s~i~~~A~~L~~~~~~~~~~~~ 108 (112)
T cd05528 83 DPADKLIRSRACELRDEVHAMIEAEL 108 (112)
T ss_pred CccccHHHHHHHHHHHHHHHHHHhcC
Confidence 37999999999999999988764
|
Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. The structure(2DKW) in this alignment is an uncharacterized protein predicted from analysis of cDNA clones from human fetal liver |
| >cd05499 Bromo_BDF1_2_II Bromodomain | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.2e-22 Score=200.88 Aligned_cols=96 Identities=34% Similarity=0.629 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHhcC---CCCCCCCCCCCCC--CCCCccccCCCcCCHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhhc
Q psy9598 119 KNECREVLETLWVC---PDSEPFRKPVDKL--DHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYN 193 (1915)
Q Consensus 119 ~~~~~~il~~l~~~---~~~~~F~~pvd~~--~~pdY~~iIk~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~Lif~N~~~yN 193 (1915)
.+.|..||+.|+++ +.++||+.|||.. ++||||++|++||||+||++||+++.|.++++|..||+|||.||+.||
T Consensus 2 ~~~c~~Il~~l~~~~~~~~s~~F~~pvd~~~~~~pdY~~~I~~P~dL~~I~~kl~~~~Y~s~~ef~~D~~li~~N~~~yn 81 (102)
T cd05499 2 LKFCEEVLKELMKPKHSAYNWPFLDPVDPVALNIPNYFSIIKKPMDLGTISKKLQNGQYQSAKEFERDVRLIFKNCYTFN 81 (102)
T ss_pred hHHHHHHHHHHHcccCCcccchhcCCCCccccCCCCHHHHhcCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 36799999999994 5699999999976 999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHH
Q psy9598 194 QNKRSKIYIMTTRLSEFAEEHL 215 (1915)
Q Consensus 194 ~~~~s~i~~~a~~l~~~f~~~~ 215 (1915)
+++ |.+|.+|..|++.|+++|
T Consensus 82 ~~~-s~~~~~a~~l~~~fe~~~ 102 (102)
T cd05499 82 PEG-TDVYMMGHQLEEVFNDKW 102 (102)
T ss_pred CCC-CHHHHHHHHHHHHHHHhC
Confidence 977 999999999999999876
|
BDF1/BDF2 like subfamily, restricted to fungi, repeat II. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >cd05498 Bromo_Brdt_II_like Bromodomain, Brdt_like subfamily, repeat II | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.6e-22 Score=200.66 Aligned_cols=96 Identities=32% Similarity=0.568 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHhcC---CCCCCCCCCCCC--CCCCCccccCCCcCCHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhhc
Q psy9598 119 KNECREVLETLWVC---PDSEPFRKPVDK--LDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYN 193 (1915)
Q Consensus 119 ~~~~~~il~~l~~~---~~~~~F~~pvd~--~~~pdY~~iIk~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~Lif~N~~~yN 193 (1915)
++.|..||+.|+++ +.++||+.||+. .++||||++|++||||+||++||.++.|.++++|..||+|||.||+.||
T Consensus 2 ~~~c~~il~~l~~~~~~~~a~~F~~pv~~~~~~~p~Y~~~I~~Pmdl~~I~~kl~~~~Y~s~~ef~~D~~li~~Na~~yn 81 (102)
T cd05498 2 LKFCSGILKELFSKKHKAYAWPFYKPVDPEALGLHDYHDIIKHPMDLSTIKKKLDNREYADAQEFAADVRLMFSNCYKYN 81 (102)
T ss_pred hhHHHHHHHHHHhCCCccccCcccCcCCccccCCCcHHHHccCCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 57899999999999 889999999994 4799999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHH
Q psy9598 194 QNKRSKIYIMTTRLSEFAEEHL 215 (1915)
Q Consensus 194 ~~~~s~i~~~a~~l~~~f~~~~ 215 (1915)
+++ |.++.+|..|++.|+++|
T Consensus 82 ~~~-s~i~~~a~~l~~~fe~~~ 102 (102)
T cd05498 82 PPD-HPVHAMARKLQDVFEDRW 102 (102)
T ss_pred CCC-CHHHHHHHHHHHHHHHhC
Confidence 977 999999999999999886
|
Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >cd05504 Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_like subfamily | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.4e-22 Score=202.25 Aligned_cols=101 Identities=36% Similarity=0.570 Sum_probs=97.2
Q ss_pred hhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCccccccCccchhhHHhhhcCCCCCCHHHHHHHHHHHHHHhhhhcCCC
Q psy9598 1532 NWKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQNK 1611 (1915)
Q Consensus 1532 ~~~~~~~~ll~~l~~~~~s~~F~~pv~~~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~Dv~lif~Na~~yN~~~ 1611 (1915)
.....|.+||..|++++.++||+.||+..++||||++|++||||+||++||+.|.|.|+++|..||+|||.||++||+++
T Consensus 12 ~~~~~c~~il~~l~~~~~s~~F~~pvd~~~~pdY~~vI~~PmDL~tI~~kL~~~~Y~s~~~f~~Dv~LI~~Na~~yN~~~ 91 (115)
T cd05504 12 LNLSALEQLLVEIVKHKDSWPFLRPVSKIEVPDYYDIIKKPMDLGTIKEKLNMGEYKLAEEFLSDIQLVFSNCFLYNPEH 91 (115)
T ss_pred HHHHHHHHHHHHHHhCCCchhhcCCCCccccccHHHHhcCcccHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 34467999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCHHHHHHHHHHHHHHHHHHHH
Q psy9598 1612 RSKIYIMTTRLSEFAEEHLRRL 1633 (1915)
Q Consensus 1612 ~s~i~~~a~~l~~~f~~~~~~~ 1633 (1915)
|.+|.+|..|+++|+++++++
T Consensus 92 -s~i~~~A~~l~~~f~~~~~~~ 112 (115)
T cd05504 92 -TSVYKAGTRLQRFFIKRCRKL 112 (115)
T ss_pred -CHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999876
|
Bromo adjacent to zinc finger 1A (BAZ1A) was identified as a novel human bromodomain gene by cDNA library screening. The Drosophila homologue, Acf1, is part of the CHRAC (chromatin accessibility complex) and regulates ISWI-induced nucleosome remodeling. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >cd05503 Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like subfamily | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.8e-22 Score=197.53 Aligned_cols=95 Identities=32% Similarity=0.578 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHcCCCCCCCCCCCCCCCCCCccccccCccchhhHHhhhcCCCCCCHHHHHHHHHHHHHHhhhhcCCCCCH
Q psy9598 1535 NECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQNKRSK 1614 (1915)
Q Consensus 1535 ~~~~~ll~~l~~~~~s~~F~~pv~~~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~Dv~lif~Na~~yN~~~~s~ 1614 (1915)
..|.+||+.|++++.++||+.||+...+|+||++|++||||+||++||++|.|.|+++|..||+|||.||+.||+++ |.
T Consensus 3 ~~c~~il~~l~~~~~~~~F~~pv~~~~~p~Y~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~-s~ 81 (97)
T cd05503 3 ALCETILDEMEAHEDAWPFLEPVNTKLVPGYRKIIKKPMDFSTIREKLESGQYKTLEEFAEDVRLVFDNCETFNEDD-SE 81 (97)
T ss_pred HHHHHHHHHHHcCCCchhhcCCCCccccCCHHHHhCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCC-CH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999987 99
Q ss_pred HHHHHHHHHHHHHHHH
Q psy9598 1615 IYIMTTRLSEFAEEHL 1630 (1915)
Q Consensus 1615 i~~~a~~l~~~f~~~~ 1630 (1915)
+|.+|..|+++|+++|
T Consensus 82 i~~~a~~l~~~f~~~~ 97 (97)
T cd05503 82 VGRAGHNMRKFFEKRW 97 (97)
T ss_pred HHHHHHHHHHHHHHhC
Confidence 9999999999999875
|
Bromo adjacent to zinc finger 2A (BAZ2A) and 2B (BAZ2B) were identified as a novel human bromodomain gene by cDNA library screening. BAZ2A is also known as Tip5 (Transcription termination factor I-interacting protein 5) and hWALp3. The proteins may play roles in transcriptional regulation. Human Tip5 is part of a complex termed NoRC (nucleolar remodeling complex), which induces nucleosome sliding and may play a role in the regulation of the rDNA locus. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >cd05516 Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, specific to animals | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.6e-22 Score=200.81 Aligned_cols=101 Identities=22% Similarity=0.398 Sum_probs=96.1
Q ss_pred hhHHHHHHHHHHHHcCCC------CCCCCCCCCCCCCCCccccccCccchhhHHhhhcCCCCCCHHHHHHHHHHHHHHhh
Q psy9598 1532 NWKNECREVLETLWVCPD------SEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSR 1605 (1915)
Q Consensus 1532 ~~~~~~~~ll~~l~~~~~------s~~F~~pv~~~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~Dv~lif~Na~ 1605 (1915)
++.++|..||+.|+++.+ ++||..||++.++||||++|++||||+||++||.+|.|.++++|..||.|||.||+
T Consensus 1 ~l~~~~~~il~~v~~~~d~~g~~~s~~F~~~p~~~~~pdYy~iI~~Pmdl~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~ 80 (107)
T cd05516 1 ELTKKMNKIVDVVIKYKDSDGRQLAEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLEDLEKDVMLLCQNAQ 80 (107)
T ss_pred CHHHHHHHHHHHHHhhhCcCCCEeeHHhhcCCCcccCCCHHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHH
Confidence 367889999999999887 89999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy9598 1606 NYNQNKRSKIYIMTTRLSEFAEEHLRRL 1633 (1915)
Q Consensus 1606 ~yN~~~~s~i~~~a~~l~~~f~~~~~~~ 1633 (1915)
.||+++ |.||.+|..|+++|+++++++
T Consensus 81 ~yN~~~-s~i~~~a~~l~~~f~~~~~~~ 107 (107)
T cd05516 81 TFNLEG-SLIYEDSIVLQSVFKSARQKI 107 (107)
T ss_pred HHCCCC-CHHHHHHHHHHHHHHHHHhcC
Confidence 999988 999999999999999998753
|
SNF2L2 (SNF2-alpha) or SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 is a global transcriptional activator, which cooperates with nuclear hormone receptors to boost transcriptional activation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >cd05512 Bromo_brd1_like Bromodomain; brd1_like subfamily | Back alignment and domain information |
|---|
Probab=99.86 E-value=4e-22 Score=195.67 Aligned_cols=93 Identities=29% Similarity=0.463 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCccccCCCcCCHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhhcCCCC
Q psy9598 118 WKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQNKR 197 (1915)
Q Consensus 118 ~~~~~~~il~~l~~~~~~~~F~~pvd~~~~pdY~~iIk~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~Lif~N~~~yN~~~~ 197 (1915)
|...|+.+|..|++++.+++|++|||..++||||++|++||||+||++||.++.|.|+++|..||+|||.||+.||+++
T Consensus 2 ~~~~l~~il~~l~~~~~~~~F~~pVd~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~- 80 (98)
T cd05512 2 LEVLLRKTLDQLQEKDTAEIFSEPVDLSEVPDYLDHIKQPMDFSTMRKKLESQRYRTLEDFEADFNLIINNCLAYNAKD- 80 (98)
T ss_pred HHHHHHHHHHHHHhCCCchhhcCCCCccccCCHHHHhcCCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCC-
Confidence 5677999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred CHHHHHHHHHHHHH
Q psy9598 198 SKIYIMTTRLSEFA 211 (1915)
Q Consensus 198 s~i~~~a~~l~~~f 211 (1915)
|.+|++|.+|++.-
T Consensus 81 s~~~~~A~~l~~~~ 94 (98)
T cd05512 81 TIFYRAAVRLRDQG 94 (98)
T ss_pred CHHHHHHHHHHHhh
Confidence 99999999998753
|
BRD1 is a mammalian gene which encodes for a nuclear protein assumed to be a transcriptional regulator. BRD1 has been implicated with brain development and susceptibility to schizophrenia and bipolar affective disorder. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >cd05500 Bromo_BDF1_2_I Bromodomain | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.2e-22 Score=197.10 Aligned_cols=99 Identities=31% Similarity=0.470 Sum_probs=93.6
Q ss_pred hhHHHHHHHHHHHHhcCCCCCCCCCCCCC--CCCCCccccCCCcCCHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhhc
Q psy9598 116 FNWKNECREVLETLWVCPDSEPFRKPVDK--LDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYN 193 (1915)
Q Consensus 116 ~~~~~~~~~il~~l~~~~~~~~F~~pvd~--~~~pdY~~iIk~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~Lif~N~~~yN 193 (1915)
..+.++|..||+.|++++.++||..|||. .++||||++|++||||+||++||.++.|.++.+|..||+|||.||+.||
T Consensus 3 ~~~~~~~~~ii~~l~~~~~a~~F~~pv~~~~~~~p~Y~~~I~~P~dL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN 82 (103)
T cd05500 3 KHQHKFLLSSIRSLKRLKDARPFLVPVDPVKLNIPHYPTIIKKPMDLGTIERKLKSNVYTSVEEFTADFNLMVDNCLTFN 82 (103)
T ss_pred HHHHHHHHHHHHHHHcCCCChhhcCCCCcccccCCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 35678999999999999999999999994 5899999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHH
Q psy9598 194 QNKRSKIYIMTTRLSEFAEEHL 215 (1915)
Q Consensus 194 ~~~~s~i~~~a~~l~~~f~~~~ 215 (1915)
+++ |.++.+|..|++.|++.+
T Consensus 83 ~~~-s~~~~~A~~l~~~fe~~~ 103 (103)
T cd05500 83 GPE-HPVSQMGKRLQAAFEKHL 103 (103)
T ss_pred CCC-CHHHHHHHHHHHHHHHhC
Confidence 976 999999999999999853
|
BDF1/BDF2 like subfamily, restricted to fungi, repeat I. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.1e-19 Score=216.00 Aligned_cols=276 Identities=13% Similarity=0.105 Sum_probs=202.0
Q ss_pred CCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEE-EEEeCCCeEEEEecccCccccceeccCcc
Q psy9598 530 NILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYL-ASTSTDGCIGFWKYKLDIDISKTVFHEPV 608 (1915)
Q Consensus 530 g~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L-~sgs~DgtI~iWDl~~~~~~~~~~~~~~~ 608 (1915)
+.+++|++.|+.|++||+.+++.+..+.+|.. +.+++|+|++ ..+ ++++.++.|.+||+.++.....+.
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg----~~l~~~~~~~~~v~~~d~~~~~~~~~~~----- 70 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGITLSKDG----KLLYVCASDSDTIQVIDLATGEVIGTLP----- 70 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECCCC-CCceEECCCC----CEEEEEECCCCeEEEEECCCCcEEEecc-----
Confidence 35788999999999999999999888876654 6789999843 554 677889999999998765322211
Q ss_pred ccccccCCCCCceEEEEECCCCcEEEEE-eCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCC-c
Q psy9598 609 MFNERIRPGNAHILCSSFSPGGLFLATG-SGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDG-T 686 (1915)
Q Consensus 609 ~~~~~~~~~~~~V~~l~fspdg~~Lasg-s~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG-~ 686 (1915)
.+ ..+..++|+|+++.++++ +.++.|++||+.. ...+..+. +...+.+++|+|+|.+|++++.++ .
T Consensus 71 -------~~-~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~---~~~~~~~~-~~~~~~~~~~~~dg~~l~~~~~~~~~ 138 (300)
T TIGR03866 71 -------SG-PDPELFALHPNGKILYIANEDDNLVTVIDIET---RKVLAEIP-VGVEPEGMAVSPDGKIVVNTSETTNM 138 (300)
T ss_pred -------CC-CCccEEEECCCCCEEEEEcCCCCeEEEEECCC---CeEEeEee-CCCCcceEEECCCCCEEEEEecCCCe
Confidence 11 234678999999877654 5689999999943 23333333 234468899999999999988875 4
Q ss_pred EEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCC-
Q psy9598 687 ALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTN- 765 (1915)
Q Consensus 687 I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~- 765 (1915)
+.+||..++....... ....+.+++|++++.+|++++..++.|++||+.+++++..+..+..
T Consensus 139 ~~~~d~~~~~~~~~~~-----------------~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~ 201 (300)
T TIGR03866 139 AHFIDTKTYEIVDNVL-----------------VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPG 201 (300)
T ss_pred EEEEeCCCCeEEEEEE-----------------cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccc
Confidence 6677887665332110 1123456899999999877665589999999999988877653321
Q ss_pred ------CeEEEEEccCCCCEEEE-EecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEEe-CCCe
Q psy9598 766 ------EVFVLESHPFDSRVLLS-AGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTD-SYGH 837 (1915)
Q Consensus 766 ------~V~sl~~sp~dg~~LaS-gs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~-~dG~ 837 (1915)
....++|+| ++.++++ .+.++.|.+||+.+++. ...+. +...+.+++|+|+|.+|+++. .+|.
T Consensus 202 ~~~~~~~~~~i~~s~-dg~~~~~~~~~~~~i~v~d~~~~~~--~~~~~------~~~~~~~~~~~~~g~~l~~~~~~~~~ 272 (300)
T TIGR03866 202 VHPEAVQPVGIKLTK-DGKTAFVALGPANRVAVVDAKTYEV--LDYLL------VGQRVWQLAFTPDEKYLLTTNGVSND 272 (300)
T ss_pred cccccCCccceEECC-CCCEEEEEcCCCCeEEEEECCCCcE--EEEEE------eCCCcceEEECCCCCEEEEEcCCCCe
Confidence 234688999 7776544 45677899999988766 33322 234688999999999998874 6899
Q ss_pred EEEEeCCCCcccccCC
Q psy9598 838 LLVYGLGGFKRPQNIP 853 (1915)
Q Consensus 838 I~Iwdl~s~~~~~~l~ 853 (1915)
|.|||+.+++++..++
T Consensus 273 i~v~d~~~~~~~~~~~ 288 (300)
T TIGR03866 273 VSVIDVAALKVIKSIK 288 (300)
T ss_pred EEEEECCCCcEEEEEE
Confidence 9999999988776664
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >cd05501 Bromo_SP100C_like Bromodomain, SP100C_like subfamily | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.2e-21 Score=190.76 Aligned_cols=96 Identities=21% Similarity=0.342 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHcCCCCCCCCCCCCCCCCCCccccccCccchhhHHhhhcCCCCCCHHHHHHHHHHHHHHhhhhcCCCCCH
Q psy9598 1535 NECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQNKRSK 1614 (1915)
Q Consensus 1535 ~~~~~ll~~l~~~~~s~~F~~pv~~~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~Dv~lif~Na~~yN~~~~s~ 1614 (1915)
..|++||.+|+.+++|++|..+ +..+||||++||+||||+||++||.+|+|.|+++|..||+|||+||++||+++ .
T Consensus 5 ~~ce~il~~l~~~~~s~~f~~~--p~~~pdY~~iIk~PMDL~tI~~kL~~~~Y~s~~ef~~D~~Lif~N~~~yN~~~--~ 80 (102)
T cd05501 5 LKCEFLLLKVYCMSKSGFFISK--PYYIRDYCQGIKEPMWLNKVKERLNERVYHTVEGFVRDMRLIFHNHKLFYKDD--D 80 (102)
T ss_pred HHHHHHHHHHHhCcccccccCC--CCCCCchHHHcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHcCCC--H
Confidence 4599999999999999999664 35899999999999999999999999999999999999999999999999875 8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy9598 1615 IYIMTTRLSEFAEEHLRRLT 1634 (1915)
Q Consensus 1615 i~~~a~~l~~~f~~~~~~~~ 1634 (1915)
++.+|..|++.|+++++++.
T Consensus 81 ~~~~a~~L~~~Fek~~~~~f 100 (102)
T cd05501 81 FGQVGITLEKKFEKNFKEVF 100 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999998875
|
The SP100C protein is a splice variant of SP100, a major component of PML-SP100 nuclear bodies (NBs), which are poorly understood. It is covalently modified by SUMO-1 and may play a role in processes at the chromatin level. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >KOG2055|consensus | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.6e-20 Score=213.33 Aligned_cols=289 Identities=13% Similarity=0.121 Sum_probs=229.0
Q ss_pred CCcEEEEEEcCCCCEEEEEECCCcEEEEECCC--CcEEEEEeCCCCCEEEEEEeCCCC-EEEEEeCCCcEEEEECCCCce
Q psy9598 476 LSAVFCVLFDKLGEVIVTGADDLLIKLWRARD--GKLLATLRGCSGEISDIAIDNRNI-LLAAGTVDKTIRIWNLQTLAP 552 (1915)
Q Consensus 476 ~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~t--g~~~~~l~gH~~~I~~Lafspdg~-~LaSgs~DgtIrVWDl~tg~~ 552 (1915)
.+.|+||.|+|...+|++|+.||+++||.+.. ...++.+.--..+|.+++|.|+|. .+++++.-..+++||+.+.+.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~ 292 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV 292 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence 37899999999999999999999999998743 346777776788999999999999 899999999999999998765
Q ss_pred E--EEeecCC-CCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCC
Q psy9598 553 I--SVLVGHQ-GIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPG 629 (1915)
Q Consensus 553 ~--~~l~~h~-~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspd 629 (1915)
. ..+.++. ..+.....+++ +++|+..+..|.|.+....++..+..+... +.|..++|+.+
T Consensus 293 ~k~~~~~g~e~~~~e~FeVShd----~~fia~~G~~G~I~lLhakT~eli~s~Kie-------------G~v~~~~fsSd 355 (514)
T KOG2055|consen 293 TKLKPPYGVEEKSMERFEVSHD----SNFIAIAGNNGHIHLLHAKTKELITSFKIE-------------GVVSDFTFSSD 355 (514)
T ss_pred ccccCCCCcccchhheeEecCC----CCeEEEcccCceEEeehhhhhhhhheeeec-------------cEEeeEEEecC
Confidence 3 3344544 35667777884 489999999999999999998877766665 78999999999
Q ss_pred CcEEEEEeCCCeEEEEEecCCCCCceeEEeccC-CCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccC
Q psy9598 630 GLFLATGSGDHHVRVYKMDGVDSPLGILEVEEH-SDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCL 708 (1915)
Q Consensus 630 g~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h-~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~ 708 (1915)
|..|++++.+|.|.+||++. ..++..+... .-.-+++|.+++|.+||+||..|.|.|||..+... .
T Consensus 356 sk~l~~~~~~GeV~v~nl~~---~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~----------s 422 (514)
T KOG2055|consen 356 SKELLASGGTGEVYVWNLRQ---NSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFA----------S 422 (514)
T ss_pred CcEEEEEcCCceEEEEecCC---cceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhc----------c
Confidence 99999999999999999943 3444444221 12346778889999999999999999998764320 1
Q ss_pred CCCccccccccccccEEEEEECCCCCEEEEEEe-cCCeEEEEECCCCceEEEeeCC---CCCeEEEEEccCCCCEEEEEe
Q psy9598 709 PHTKETSDETNKKIKVTMVAWDASDRWVITAIN-FNFQIKIWDAFNGDLVQVLKGH---TNEVFVLESHPFDSRVLLSAG 784 (1915)
Q Consensus 709 ~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~-~Dg~I~vwD~~tg~~i~~l~gH---~~~V~sl~~sp~dg~~LaSgs 784 (1915)
....+..........|+++.|++++..|+.++. ....+++-.+.+......+... -+.|+|++|+| .+.+||.|.
T Consensus 423 ~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP-~sG~lAvGN 501 (514)
T KOG2055|consen 423 TNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSP-NSGYLAVGN 501 (514)
T ss_pred CCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecC-CCceEEeec
Confidence 111223334456678999999999999988774 3567888888776666555433 34689999999 999999999
Q ss_pred cCceEEEEECC
Q psy9598 785 HDGLIIIWDIL 795 (1915)
Q Consensus 785 ~DG~I~IWdl~ 795 (1915)
.+|.|.+|.+.
T Consensus 502 e~grv~l~kL~ 512 (514)
T KOG2055|consen 502 EAGRVHLFKLH 512 (514)
T ss_pred CCCceeeEeec
Confidence 99999999874
|
|
| >cd05511 Bromo_TFIID Bromodomain, TFIID-like subfamily | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-21 Score=197.44 Aligned_cols=104 Identities=35% Similarity=0.487 Sum_probs=98.8
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCCCCCCCCCccccCCCcCCHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhhcCCCCCH
Q psy9598 120 NECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQNKRSK 199 (1915)
Q Consensus 120 ~~~~~il~~l~~~~~~~~F~~pvd~~~~pdY~~iIk~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~Lif~N~~~yN~~~~s~ 199 (1915)
..++.|+.+|++++.++||+.||++..+|+||++|++||||+||++||.++.|.++++|..||+|||.||+.||+++ |.
T Consensus 3 ~~l~~ii~~l~~~~~s~~F~~pv~~~~~p~Y~~~I~~PmdL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN~~~-s~ 81 (112)
T cd05511 3 FILDEIVNELKNLPDSWPFHTPVNKKKVPDYYKIIKRPMDLQTIRKKISKHKYQSREEFLEDIELIVDNSVLYNGPD-SV 81 (112)
T ss_pred HHHHHHHHHHHhCCCchhhcCCCChhhcccHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCC-CH
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999966 99
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhc
Q psy9598 200 IYIMTTRLSEFAEEHLRRLTVRWNS 224 (1915)
Q Consensus 200 i~~~a~~l~~~f~~~~~~~~~~~~~ 224 (1915)
++.+|..|.+.|+.+++.+...+..
T Consensus 82 i~~~A~~l~~~~~~~~~~~~~~~~~ 106 (112)
T cd05511 82 YTKKAKEMLELAEELLAEREEKLTQ 106 (112)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 9999999999999999999877653
|
Human TAFII250 (or TAF250) is the largest subunit of TFIID, a large multi-domain complex, which initiates the assembly of the transcription machinery. TAFII250 contains two bromodomains that specifically bind to acetylated histone H4. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >cd05502 Bromo_tif1_like Bromodomain; tif1_like subfamily | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.9e-21 Score=196.19 Aligned_cols=102 Identities=34% Similarity=0.585 Sum_probs=97.5
Q ss_pred hhhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCccccccCccchhhHHhhhcC---CCCCCHHHHHHHHHHHHHHhhhh
Q psy9598 1531 FNWKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRG---DNYESPIDFVKDVKRVFHNSRNY 1607 (1915)
Q Consensus 1531 ~~~~~~~~~ll~~l~~~~~s~~F~~pv~~~~~pdY~~iIk~Pmdl~tI~~kl~~---~~Y~s~~ef~~Dv~lif~Na~~y 1607 (1915)
...++.|.+||.+|++++.++||+.||++ ++|+||++|++||||+||++||+. |.|.++++|..||+|||.||+.|
T Consensus 3 ~~~~~~c~~il~~l~~~~~s~~F~~pv~~-~~p~Y~~iI~~PmdL~tI~~kL~~~~~~~Y~s~~~f~~D~~li~~Na~~y 81 (109)
T cd05502 3 PIDQRKCERLLLELYCHELSLPFHEPVSP-SVPNYYKIIKTPMDLSLIRKKLQPKSPQHYSSPEEFVADVRLMFKNCYKF 81 (109)
T ss_pred HHHHHHHHHHHHHHHhCCCChhhcCCCCC-CCCCHHHHCCCCccHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999999999999999 899999999999999999999998 69999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy9598 1608 NQNKRSKIYIMTTRLSEFAEEHLRRLT 1634 (1915)
Q Consensus 1608 N~~~~s~i~~~a~~l~~~f~~~~~~~~ 1634 (1915)
|+++ |.++.+|..|++.|++++++++
T Consensus 82 N~~~-s~i~~~a~~l~~~f~~~~~~~~ 107 (109)
T cd05502 82 NEED-SEVAQAGKELELFFEEQLKEIL 107 (109)
T ss_pred CCCC-CHHHHHHHHHHHHHHHHHHHHC
Confidence 9988 9999999999999999999875
|
Tif1 (transcription intermediary factor 1) is a member of the tripartite motif (TRIM) protein family, which is characterized by a particular domain architecture. It functions by recruiting coactivators and/or corepressors to modulate transcription. Vertebrate Tif1-gamma, also labeled E3 ubiquitin-protein ligase TRIM33, plays a role in the control of hematopoiesis. Its homologue in Xenopus laevis, Ectodermin, has been shown to function in germ-layer specification and control of cell growth during embryogenesis. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >cd05508 Bromo_RACK7 Bromodomain, RACK7_like subfamily | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.4e-21 Score=191.40 Aligned_cols=96 Identities=32% Similarity=0.530 Sum_probs=90.7
Q ss_pred hhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCccccccCccchhhHHhhhcCCCCCCHHHHHHHHHHHHHHhhhhcCCC
Q psy9598 1532 NWKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQNK 1611 (1915)
Q Consensus 1532 ~~~~~~~~ll~~l~~~~~s~~F~~pv~~~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~Dv~lif~Na~~yN~~~ 1611 (1915)
.+...++.+++.|+ ++.|+||+.||++.++||||++|++||||+||++||++|.|.++++|.+||+|||.||+.||+++
T Consensus 3 ~l~~~L~~~~~~~~-~~~s~~F~~PV~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~LI~~Na~~YN~~~ 81 (99)
T cd05508 3 QLSKLLKFALERMK-QPGAEPFLKPVDLEQFPDYAQYVFKPMDLSTLEKNVRKKAYGSTDAFLADAKWILHNAIIYNGGD 81 (99)
T ss_pred HHHHHHHHHHHHHh-CcCcchhcCCCChhhCCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 45667888899999 99999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCHHHHHHHHHHHHHHHH
Q psy9598 1612 RSKIYIMTTRLSEFAEEH 1629 (1915)
Q Consensus 1612 ~s~i~~~a~~l~~~f~~~ 1629 (1915)
|.++.+|..|.+.|+..
T Consensus 82 -s~i~~~A~~l~~~~~~e 98 (99)
T cd05508 82 -HKLTQAAKAIVKICEQE 98 (99)
T ss_pred -CHHHHHHHHHHHHHHhh
Confidence 99999999999998753
|
RACK7 (also called human protein kinase C-binding protein) was identified as a potential tumor suppressor genes, it shares domain architecture with BS69/ZMYND11; both have been implicated in the regulation of cellular proliferation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >KOG2055|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.4e-20 Score=210.81 Aligned_cols=290 Identities=13% Similarity=0.198 Sum_probs=229.0
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCCcEEEEECCC--CceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEeccc
Q psy9598 518 SGEISDIAIDNRNILLAAGTVDKTIRIWNLQT--LAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKL 595 (1915)
Q Consensus 518 ~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~t--g~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~ 595 (1915)
.+.|++|.|+|...+|++|+.|++++||.+.. ...++.+.-...+|.+.+|.|.+ ...+++++.-..+..||+.+
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G---~~~i~~s~rrky~ysyDle~ 289 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNG---HSVIFTSGRRKYLYSYDLET 289 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCC---ceEEEecccceEEEEeeccc
Confidence 46799999999999999999999999998863 44566666667899999999943 34899999999999999987
Q ss_pred CccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCC
Q psy9598 596 DIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSH 675 (1915)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg 675 (1915)
.+.... ..+... ....+....+++++++|+..|..|.|.|.... +...+..+ ...+.|..++|+.+|
T Consensus 290 ak~~k~---~~~~g~------e~~~~e~FeVShd~~fia~~G~~G~I~lLhak---T~eli~s~-KieG~v~~~~fsSds 356 (514)
T KOG2055|consen 290 AKVTKL---KPPYGV------EEKSMERFEVSHDSNFIAIAGNNGHIHLLHAK---TKELITSF-KIEGVVSDFTFSSDS 356 (514)
T ss_pred cccccc---cCCCCc------ccchhheeEecCCCCeEEEcccCceEEeehhh---hhhhhhee-eeccEEeeEEEecCC
Confidence 753221 111111 12356778899999999999999999999873 23333333 246789999999999
Q ss_pred CEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCC--
Q psy9598 676 LRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFN-- 753 (1915)
Q Consensus 676 ~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~t-- 753 (1915)
..|++++.+|.|.+||++...+.+...+.. ...-+++|.+++|.||++|+. .|.|.|||..+
T Consensus 357 k~l~~~~~~GeV~v~nl~~~~~~~rf~D~G---------------~v~gts~~~S~ng~ylA~GS~-~GiVNIYd~~s~~ 420 (514)
T KOG2055|consen 357 KELLASGGTGEVYVWNLRQNSCLHRFVDDG---------------SVHGTSLCISLNGSYLATGSD-SGIVNIYDGNSCF 420 (514)
T ss_pred cEEEEEcCCceEEEEecCCcceEEEEeecC---------------ccceeeeeecCCCceEEeccC-cceEEEeccchhh
Confidence 999999999999999999987766554322 123467889999999999998 99999999653
Q ss_pred ----CceEEEeeCCCCCeEEEEEccCCCCEEEEEec--CceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCC
Q psy9598 754 ----GDLVQVLKGHTNEVFVLESHPFDSRVLLSAGH--DGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGT 827 (1915)
Q Consensus 754 ----g~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~--DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~ 827 (1915)
.+++..+..-...|++|.|++ +..+||.+|. +..+++-.+.+... ...|.. .....+.|+|++|||.|.
T Consensus 421 ~s~~PkPik~~dNLtt~Itsl~Fn~-d~qiLAiaS~~~knalrLVHvPS~TV--FsNfP~--~n~~vg~vtc~aFSP~sG 495 (514)
T KOG2055|consen 421 ASTNPKPIKTVDNLTTAITSLQFNH-DAQILAIASRVKKNALRLVHVPSCTV--FSNFPT--SNTKVGHVTCMAFSPNSG 495 (514)
T ss_pred ccCCCCchhhhhhhheeeeeeeeCc-chhhhhhhhhccccceEEEeccceee--eccCCC--CCCcccceEEEEecCCCc
Confidence 467777777778899999999 9999887764 67899998877555 444442 234457899999999999
Q ss_pred EEEEEeCCCeEEEEeCC
Q psy9598 828 TCALTDSYGHLLVYGLG 844 (1915)
Q Consensus 828 ~Lasg~~dG~I~Iwdl~ 844 (1915)
+||+|...|.|.+|.+.
T Consensus 496 ~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 496 YLAVGNEAGRVHLFKLH 512 (514)
T ss_pred eEEeecCCCceeeEeec
Confidence 99999999999999874
|
|
| >KOG0639|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.6e-20 Score=215.39 Aligned_cols=282 Identities=16% Similarity=0.237 Sum_probs=227.8
Q ss_pred ecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCC---cEEEEEe--CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEE
Q psy9598 472 NLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDG---KLLATLR--GCSGEISDIAIDNRNILLAAGTVDKTIRIWN 546 (1915)
Q Consensus 472 l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg---~~~~~l~--gH~~~I~~Lafspdg~~LaSgs~DgtIrVWD 546 (1915)
...|..-|.++++|...++++||+. |.|+|||+... ..+..|. ...+.|.++.+.+||+.|++|+.-.+|.|||
T Consensus 415 tL~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWD 493 (705)
T KOG0639|consen 415 TLAHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWD 493 (705)
T ss_pred hhccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeee
Confidence 3589999999999999999999975 68999998542 2333332 2456799999999999999999999999999
Q ss_pred CCCCceE--EEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEE
Q psy9598 547 LQTLAPI--SVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCS 624 (1915)
Q Consensus 547 l~tg~~~--~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l 624 (1915)
+.+..+. ..+....-.+.+++.+|+. ++.++++.||.|.|||+.....+ ..+.+|...+.||
T Consensus 494 LAapTprikaeltssapaCyALa~spDa----kvcFsccsdGnI~vwDLhnq~~V------------rqfqGhtDGascI 557 (705)
T KOG0639|consen 494 LAAPTPRIKAELTSSAPACYALAISPDA----KVCFSCCSDGNIAVWDLHNQTLV------------RQFQGHTDGASCI 557 (705)
T ss_pred ccCCCcchhhhcCCcchhhhhhhcCCcc----ceeeeeccCCcEEEEEcccceee------------ecccCCCCCceeE
Confidence 9865443 3344444567888999954 89999999999999999876433 3345778899999
Q ss_pred EECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecc
Q psy9598 625 SFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDM 704 (1915)
Q Consensus 625 ~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~ 704 (1915)
.++++|..|-+|+-|.+|+-||++...... -....+.|.++.++|++.+|++|-.++.+-|-.....+
T Consensus 558 dis~dGtklWTGGlDntvRcWDlregrqlq----qhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~-------- 625 (705)
T KOG0639|consen 558 DISKDGTKLWTGGLDNTVRCWDLREGRQLQ----QHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPE-------- 625 (705)
T ss_pred EecCCCceeecCCCccceeehhhhhhhhhh----hhhhhhhheecccCCCccceeeecccCcEEEEecCCcc--------
Confidence 999999999999999999999995432211 12346789999999999999999999988776544332
Q ss_pred cccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEEe
Q psy9598 705 NTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAG 784 (1915)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs 784 (1915)
......|...|.++.|.+.|+++++.+. |+.+..|...-|..+...+ ..+.|.++.++. +.++|+||+
T Consensus 626 ---------kyqlhlheScVLSlKFa~cGkwfvStGk-DnlLnawrtPyGasiFqsk-E~SsVlsCDIS~-ddkyIVTGS 693 (705)
T KOG0639|consen 626 ---------KYQLHLHESCVLSLKFAYCGKWFVSTGK-DNLLNAWRTPYGASIFQSK-ESSSVLSCDISF-DDKYIVTGS 693 (705)
T ss_pred ---------ceeecccccEEEEEEecccCceeeecCc-hhhhhhccCccccceeecc-ccCcceeeeecc-CceEEEecC
Confidence 1223458889999999999999999998 9999999998888887775 445799999998 899999999
Q ss_pred cCceEEEEEC
Q psy9598 785 HDGLIIIWDI 794 (1915)
Q Consensus 785 ~DG~I~IWdl 794 (1915)
.|....||.+
T Consensus 694 GdkkATVYeV 703 (705)
T KOG0639|consen 694 GDKKATVYEV 703 (705)
T ss_pred CCcceEEEEE
Confidence 9988888875
|
|
| >KOG0267|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-21 Score=236.20 Aligned_cols=236 Identities=25% Similarity=0.408 Sum_probs=208.4
Q ss_pred EecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCC
Q psy9598 471 VNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTL 550 (1915)
Q Consensus 471 ~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg 550 (1915)
.+..|...|.|+..-..++.+++|+.|..+-+|.+.....+..|.+|.++|-||.|+....+|++|+.+|+|+|||+..+
T Consensus 23 ~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeA 102 (825)
T KOG0267|consen 23 EFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEA 102 (825)
T ss_pred hhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhh
Confidence 45689999999998778999999999999999999888888899999999999999999999999999999999999999
Q ss_pred ceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCC
Q psy9598 551 APISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGG 630 (1915)
Q Consensus 551 ~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg 630 (1915)
+.+++|.||...+.+|.|+|.+ .++++|+.|+.+++||++...+.... .+|...|.++.|+|+|
T Consensus 103 k~vrtLtgh~~~~~sv~f~P~~----~~~a~gStdtd~~iwD~Rk~Gc~~~~------------~s~~~vv~~l~lsP~G 166 (825)
T KOG0267|consen 103 KIVRTLTGHLLNITSVDFHPYG----EFFASGSTDTDLKIWDIRKKGCSHTY------------KSHTRVVDVLRLSPDG 166 (825)
T ss_pred hhhhhhhccccCcceeeeccce----EEeccccccccceehhhhccCceeee------------cCCcceeEEEeecCCC
Confidence 9999999999999999999976 78899999999999999866543322 2466789999999999
Q ss_pred cEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCC
Q psy9598 631 LFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPH 710 (1915)
Q Consensus 631 ~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~ 710 (1915)
.++++|+.|.+++|||+ ..+..+..+.+|.+.|.++.|+|..-++++||.|++|++||+++.+.+.
T Consensus 167 r~v~~g~ed~tvki~d~---~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~----------- 232 (825)
T KOG0267|consen 167 RWVASGGEDNTVKIWDL---TAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVIS----------- 232 (825)
T ss_pred ceeeccCCcceeeeecc---cccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEee-----------
Confidence 99999999999999998 4455677889999999999999999999999999999999998766332
Q ss_pred CccccccccccccEEEEEECCCCCEEEEEEe
Q psy9598 711 TKETSDETNKKIKVTMVAWDASDRWVITAIN 741 (1915)
Q Consensus 711 ~~~~~~~~~~~~~V~~va~spdg~~L~t~s~ 741 (1915)
........|.+++|++++..+++|..
T Consensus 233 -----s~~~~~~~v~~~~fn~~~~~~~~G~q 258 (825)
T KOG0267|consen 233 -----SGKPETDGVRSLAFNPDGKIVLSGEQ 258 (825)
T ss_pred -----ccCCccCCceeeeecCCceeeecCch
Confidence 12223678999999999999888865
|
|
| >cd05524 Bromo_polybromo_I Bromodomain, polybromo repeat I | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.4e-21 Score=195.45 Aligned_cols=102 Identities=21% Similarity=0.343 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHhcCCC------CCCCCCCCCCCCCCCccccCCCcCCHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhh
Q psy9598 118 WKNECREVLETLWVCPD------SEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRN 191 (1915)
Q Consensus 118 ~~~~~~~il~~l~~~~~------~~~F~~pvd~~~~pdY~~iIk~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~Lif~N~~~ 191 (1915)
..+.|..|+..|+++.. +.+|..+|++..+||||++|++||||+||++||+++.|.|+++|.+||+|||.||+.
T Consensus 3 ~~~~c~~il~~l~~~~~~~g~~l~~~F~~~p~~~~~PdYy~iI~~Pmdl~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~ 82 (113)
T cd05524 3 PIAVCQELYDTIRNYKSEDGRILCESFIRVPKRRNEPEYYEVVSNPIDLLKIQQKLKTEEYDDVDDLTADFELLINNAKA 82 (113)
T ss_pred HHHHHHHHHHHHHhhcccCCCchhHHHhcCCCcccCCCHHHHhCCccCHHHHHHHhCcCCCCCHHHHHHHHHHHHHHHHH
Confidence 45789999999997655 478999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy9598 192 YNQNKRSKIYIMTTRLSEFAEEHLRRLTV 220 (1915)
Q Consensus 192 yN~~~~s~i~~~a~~l~~~f~~~~~~~~~ 220 (1915)
||+++ |.+|.+|..|+++|++.++++..
T Consensus 83 yN~~~-s~~~~~A~~L~~~f~~~~~~~~~ 110 (113)
T cd05524 83 YYKPD-SPEHKDACKLWELFLSARNEVLS 110 (113)
T ss_pred HCCCC-CHHHHHHHHHHHHHHHHHHHhhc
Confidence 99977 99999999999999999988764
|
Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine. |
| >cd05519 Bromo_SNF2 Bromodomain, SNF2-like subfamily, specific to fungi | Back alignment and domain information |
|---|
Probab=99.85 E-value=2e-21 Score=193.96 Aligned_cols=97 Identities=28% Similarity=0.451 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHhcCC------CCCCCCCCCCCCCCCCccccCCCcCCHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhh
Q psy9598 118 WKNECREVLETLWVCP------DSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRN 191 (1915)
Q Consensus 118 ~~~~~~~il~~l~~~~------~~~~F~~pvd~~~~pdY~~iIk~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~Lif~N~~~ 191 (1915)
+++.|..|++.|+.+. .+++|.+||+...+||||++|++||||+||++||+++.|.|+++|..||+|||.||+.
T Consensus 1 ~~~~~~~i~~~v~~~~~~~~~~~~~~F~~~p~~~~~pdYy~iIk~Pmdl~~I~~kl~~~~Y~s~~~f~~D~~li~~Na~~ 80 (103)
T cd05519 1 LKAAMLEIYDAVLNCEDETGRKLSELFLEKPSKKLYPDYYVIIKRPIALDQIKRRIEGRAYKSLEEFLEDFHLMFANART 80 (103)
T ss_pred CHHHHHHHHHHHHHhcCcCCCchhHHhcCCCCCCCCcCHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHH
Confidence 4678999999999554 4899999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHHH
Q psy9598 192 YNQNKRSKIYIMTTRLSEFAEEHL 215 (1915)
Q Consensus 192 yN~~~~s~i~~~a~~l~~~f~~~~ 215 (1915)
||+++ |.+|.+|..|++.|++++
T Consensus 81 yn~~~-s~i~~~A~~l~~~f~~~~ 103 (103)
T cd05519 81 YNQEG-SIVYEDAVEMEKAFKKKY 103 (103)
T ss_pred HCCCC-CHHHHHHHHHHHHHHHhC
Confidence 99977 999999999999999864
|
SNF2 is a yeast protein involved in transcriptional activation, it is the catalytic component of the SWI/SNF ATP-dependent chromatin remodeling complex. The protein is essential for the regulation of gene expression (both positive and negative) of a large number of genes. The SWI/SNF complex changes chromatin structure by altering DNA-histone contacts within the nucleosome, which results in a re-positioning of the nucleosome and facilitates or represses the binding of gene-specific transcription factors. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >cd05509 Bromo_gcn5_like Bromodomain; Gcn5_like subfamily | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.2e-21 Score=193.59 Aligned_cols=100 Identities=34% Similarity=0.578 Sum_probs=96.4
Q ss_pred hHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCccccccCccchhhHHhhhcCCCCCCHHHHHHHHHHHHHHhhhhcCCCC
Q psy9598 1533 WKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQNKR 1612 (1915)
Q Consensus 1533 ~~~~~~~ll~~l~~~~~s~~F~~pv~~~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~Dv~lif~Na~~yN~~~~ 1612 (1915)
+..+|..||+.|++++.++||+.||++.++|+||++|++||||+||++||.++.|.|+.+|..||+|||.||+.||+++
T Consensus 2 ~~~~~~~il~~l~~~~~a~~F~~pv~~~~~p~Y~~~I~~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~~~- 80 (101)
T cd05509 2 LYTQLKKVLDSLKNHKSAWPFLEPVDKEEAPDYYDVIKKPMDLSTMEEKLENGYYVTLEEFVADLKLIFDNCRLYNGPD- 80 (101)
T ss_pred hHHHHHHHHHHHHhCCCchhhcCCCChhhcCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCC-
Confidence 4678999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CHHHHHHHHHHHHHHHHHHHH
Q psy9598 1613 SKIYIMTTRLSEFAEEHLRRL 1633 (1915)
Q Consensus 1613 s~i~~~a~~l~~~f~~~~~~~ 1633 (1915)
|.+|.+|..|++.|+++++++
T Consensus 81 s~~~~~a~~l~~~f~~~~~~~ 101 (101)
T cd05509 81 TEYYKCANKLEKFFWKKLKEL 101 (101)
T ss_pred CHHHHHHHHHHHHHHHHHhhC
Confidence 999999999999999998763
|
Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >KOG1274|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.3e-19 Score=222.71 Aligned_cols=270 Identities=17% Similarity=0.228 Sum_probs=212.3
Q ss_pred cCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCC-cEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCc
Q psy9598 473 LGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDG-KLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLA 551 (1915)
Q Consensus 473 ~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg-~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~ 551 (1915)
.+|+...+.|+|.|+|.+|+|++.||.|++|+..+. ..-.++..|...|.+++... .+|++|+.+++|.+|.+.++.
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s--~~f~~~s~~~tv~~y~fps~~ 87 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYS--NHFLTGSEQNTVLRYKFPSGE 87 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecc--cceEEeeccceEEEeeCCCCC
Confidence 379999999999999999999999999999997765 44444444778888887654 489999999999999999988
Q ss_pred eEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCc
Q psy9598 552 PISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGL 631 (1915)
Q Consensus 552 ~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~ 631 (1915)
.-..+...+-++.+++|+- +|.+++.||.|-.|++.++.+.... ..+.+|.++|.++.|+|.+.
T Consensus 88 ~~~iL~Rftlp~r~~~v~g----~g~~iaagsdD~~vK~~~~~D~s~~------------~~lrgh~apVl~l~~~p~~~ 151 (933)
T KOG1274|consen 88 EDTILARFTLPIRDLAVSG----SGKMIAAGSDDTAVKLLNLDDSSQE------------KVLRGHDAPVLQLSYDPKGN 151 (933)
T ss_pred ccceeeeeeccceEEEEec----CCcEEEeecCceeEEEEeccccchh------------eeecccCCceeeeeEcCCCC
Confidence 7777777788999999986 5699999999999999998776432 23457889999999999999
Q ss_pred EEEEEeCCCeEEEEEecCCCCCceeEEec----cC-CCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccc
Q psy9598 632 FLATGSGDHHVRVYKMDGVDSPLGILEVE----EH-SDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNT 706 (1915)
Q Consensus 632 ~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~----~h-~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~ 706 (1915)
+||+.+.||.|+||++........+..+. .- ...+..++|+|+|..|+..+.|+.|++|+..+........
T Consensus 152 fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr---- 227 (933)
T KOG1274|consen 152 FLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLR---- 227 (933)
T ss_pred EEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeec----
Confidence 99999999999999995432111111111 11 4456778999999999999999999999887665332211
Q ss_pred cCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEE
Q psy9598 707 CLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVL 780 (1915)
Q Consensus 707 ~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~L 780 (1915)
...+...++.+.|+|+|.||++++- +|.|.|||+.+... ......|++++|.| +.+-|
T Consensus 228 ----------~~~~ss~~~~~~wsPnG~YiAAs~~-~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p-~~n~i 285 (933)
T KOG1274|consen 228 ----------DKLSSSKFSDLQWSPNGKYIAASTL-DGQILVWNVDTHER----HEFKRAVCCEAWKP-NANAI 285 (933)
T ss_pred ----------ccccccceEEEEEcCCCcEEeeecc-CCcEEEEecccchh----ccccceeEEEecCC-CCCee
Confidence 1123344899999999999999998 99999999987222 22345799999999 55544
|
|
| >cd05515 Bromo_polybromo_V Bromodomain, polybromo repeat V | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.4e-21 Score=193.45 Aligned_cols=97 Identities=29% Similarity=0.448 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHhcCCC------CCCCCCCCCCCCCCCccccCCCcCCHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhh
Q psy9598 119 KNECREVLETLWVCPD------SEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNY 192 (1915)
Q Consensus 119 ~~~~~~il~~l~~~~~------~~~F~~pvd~~~~pdY~~iIk~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~Lif~N~~~y 192 (1915)
.++|..|++.|+.+.+ ++||+.||+..++||||++|++||||+||++||.++.|.++++|..||+|||.||++|
T Consensus 2 ~~~~~~~~~~i~~~~d~~~~~~a~~F~~~p~~~~~pdYy~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~l~~~Na~~y 81 (105)
T cd05515 2 QQKLWELYNAVKNYTDGRGRRLSLIFMRLPSKSEYPDYYDVIKKPIDMEKIRSKIEGNQYQSLDDMVSDFVLMFDNACKY 81 (105)
T ss_pred hHHHHHHHHHHHHhhCcCCCcccHHhccCCCcccCCcHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHH
Confidence 5679999999987544 7999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHH
Q psy9598 193 NQNKRSKIYIMTTRLSEFAEEHLR 216 (1915)
Q Consensus 193 N~~~~s~i~~~a~~l~~~f~~~~~ 216 (1915)
|+++ |.+|.+|..|+++|.+..+
T Consensus 82 N~~~-s~i~~~A~~L~~~~~~~~~ 104 (105)
T cd05515 82 NEPD-SQIYKDALTLQKVLLETKR 104 (105)
T ss_pred CCCC-CHHHHHHHHHHHHHHHHHc
Confidence 9977 9999999999999987653
|
Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine. |
| >cd05528 Bromo_AAA Bromodomain; sub-family co-occurring with AAA domains | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.6e-21 Score=193.30 Aligned_cols=103 Identities=29% Similarity=0.422 Sum_probs=97.3
Q ss_pred hhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCccccccCccchhhHHhhhcCCCCCCHHHHHHHHHHHHHHhhhhcCCC
Q psy9598 1532 NWKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQNK 1611 (1915)
Q Consensus 1532 ~~~~~~~~ll~~l~~~~~s~~F~~pv~~~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~Dv~lif~Na~~yN~~~ 1611 (1915)
+++..|..+++.|++++.++||+.||+..++||||++|++||||+||++||+++.|.|+++|..||+|||.||+.||+++
T Consensus 3 ~lr~~L~~il~~l~~~~~~~~F~~pv~~~~~pdY~~vI~~PmdL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN~~~ 82 (112)
T cd05528 3 ELRLFLRDVLKRLASDKRFNAFTKPVDEEEVPDYYEIIKQPMDLQTILQKLDTHQYLTAKDFLKDIDLIVTNALEYNPDR 82 (112)
T ss_pred HHHHHHHHHHHHHHhCCCchhhcCCCCccccCcHHHHHcCCCCHHHHHHHHcCCCcCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999985
Q ss_pred ---CCHHHHHHHHHHHHHHHHHHHHH
Q psy9598 1612 ---RSKIYIMTTRLSEFAEEHLRRLT 1634 (1915)
Q Consensus 1612 ---~s~i~~~a~~l~~~f~~~~~~~~ 1634 (1915)
+|.|+.+|..|++.|.+++..+.
T Consensus 83 s~~~s~i~~~A~~L~~~~~~~~~~~~ 108 (112)
T cd05528 83 DPADKLIRSRACELRDEVHAMIEAEL 108 (112)
T ss_pred CccccHHHHHHHHHHHHHHHHHHhcC
Confidence 37999999999999999988754
|
Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. The structure(2DKW) in this alignment is an uncharacterized protein predicted from analysis of cDNA clones from human fetal liver |
| >KOG4328|consensus | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.1e-19 Score=207.95 Aligned_cols=307 Identities=18% Similarity=0.238 Sum_probs=228.8
Q ss_pred EECCCCcEEEEEeCCCCCEEEEEEeCCC--CEEEEEeCCCcEEEEECCCC----ceEEEeecCCCCeEEEEeccCccCCC
Q psy9598 503 WRARDGKLLATLRGCSGEISDIAIDNRN--ILLAAGTVDKTIRIWNLQTL----APISVLVGHQGIITGVNFCPLEVNGF 576 (1915)
Q Consensus 503 Wd~~tg~~~~~l~gH~~~I~~Lafspdg--~~LaSgs~DgtIrVWDl~tg----~~~~~l~~h~~~V~sl~fsp~~~~d~ 576 (1915)
.++.+......++-|.+.|++++|+|.. +++|+|..-|.|-+||+.+. .-+..+..|.++|.+|.|+|. +.
T Consensus 171 l~l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~---n~ 247 (498)
T KOG4328|consen 171 LDLDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPA---NT 247 (498)
T ss_pred cccccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCC---Ch
Confidence 3444455566677789999999999964 58899999999999999532 236677889999999999995 45
Q ss_pred cEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCcee
Q psy9598 577 NYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGI 656 (1915)
Q Consensus 577 ~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i 656 (1915)
..+++.|.||+|++-|+........+... .....+..+.|+.....+++|+.=|...+||++.... ..
T Consensus 248 s~i~ssSyDGtiR~~D~~~~i~e~v~s~~----------~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s--~~ 315 (498)
T KOG4328|consen 248 SQIYSSSYDGTIRLQDFEGNISEEVLSLD----------TDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGS--EY 315 (498)
T ss_pred hheeeeccCceeeeeeecchhhHHHhhcC----------ccceeeeeccccCCCccEEEeecccceEEEEeecCCc--cc
Confidence 89999999999999999876432211111 1235577888888888888888888999999975443 23
Q ss_pred EEeccCCCCeeEEEEcCCCC-EEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCE
Q psy9598 657 LEVEEHSDKVDSIQWSHSHL-RFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRW 735 (1915)
Q Consensus 657 ~~l~~h~~~V~sl~fspdg~-~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~ 735 (1915)
..+.-|...|.+|+++|... +|+|||.|++++|||++....... .......|...|.++.|||.|..
T Consensus 316 ~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~s------------p~lst~~HrrsV~sAyFSPs~gt 383 (498)
T KOG4328|consen 316 ENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKAS------------PFLSTLPHRRSVNSAYFSPSGGT 383 (498)
T ss_pred hhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCC------------cceecccccceeeeeEEcCCCCc
Confidence 44556888999999999765 789999999999999986542210 13345668899999999999999
Q ss_pred EEEEEecCCeEEEEECC----CCceEEEeeCCCC------CeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceee
Q psy9598 736 VITAINFNFQIKIWDAF----NGDLVQVLKGHTN------EVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWF 805 (1915)
Q Consensus 736 L~t~s~~Dg~I~vwD~~----tg~~i~~l~gH~~------~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~ 805 (1915)
|++.+. |..|+|||.. ...+..++. |.. ......|.| +..+|++|-.-..|-|+|-..++. +..+
T Consensus 384 l~TT~~-D~~IRv~dss~~sa~~~p~~~I~-Hn~~t~RwlT~fKA~W~P-~~~li~vg~~~r~IDv~~~~~~q~--v~el 458 (498)
T KOG4328|consen 384 LLTTCQ-DNEIRVFDSSCISAKDEPLGTIP-HNNRTGRWLTPFKAAWDP-DYNLIVVGRYPRPIDVFDGNGGQM--VCEL 458 (498)
T ss_pred eEeecc-CCceEEeecccccccCCccceee-ccCcccccccchhheeCC-CccEEEEeccCcceeEEcCCCCEE--eeec
Confidence 999998 9999999983 233333433 322 245567999 999999999999999999988875 4443
Q ss_pred eeeecCCCCcceEE-EEEcCCCC-EEEEEeCCCeEEEEeCCC
Q psy9598 806 HNIVEGQGEGALFD-GKWSPDGT-TCALTDSYGHLLVYGLGG 845 (1915)
Q Consensus 806 ~~~~~~~~~~~V~~-vafSpdg~-~Lasg~~dG~I~Iwdl~s 845 (1915)
. ......|.+ ..|+|-+. ++|-++..|.|+||--..
T Consensus 459 ~----~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k~ 496 (498)
T KOG4328|consen 459 H----DPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNKK 496 (498)
T ss_pred c----CccccccccceeecccccceeccCCccceEEEEecCC
Confidence 3 111123333 47999887 555566788999986543
|
|
| >cd05517 Bromo_polybromo_II Bromodomain, polybromo repeat II | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.4e-21 Score=192.08 Aligned_cols=94 Identities=28% Similarity=0.456 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHhcCCC------CCCCCCCCCCCCCCCccccCCCcCCHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhh
Q psy9598 119 KNECREVLETLWVCPD------SEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNY 192 (1915)
Q Consensus 119 ~~~~~~il~~l~~~~~------~~~F~~pvd~~~~pdY~~iIk~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~Lif~N~~~y 192 (1915)
+++|..|+..|+++.+ +++|.++|++.++||||+||++||||+||++||.++.|.++.+|..||+|||.||+.|
T Consensus 2 ~~~~~~l~~~i~~~~d~~gr~~~~~F~~lp~~~~~pdYy~vI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~y 81 (103)
T cd05517 2 KQILEQLLEAVMTATDPSGRLISELFQKLPSKVLYPDYYAVIKEPIDLKTIAQRIQSGYYKSIEDMEKDLDLMVKNAKTF 81 (103)
T ss_pred hHHHHHHHHHHHHhhCcCCCChhHHHhcCCCCCCCCCHHHHcCCCcCHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 5789999999998766 5999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHH
Q psy9598 193 NQNKRSKIYIMTTRLSEFAEE 213 (1915)
Q Consensus 193 N~~~~s~i~~~a~~l~~~f~~ 213 (1915)
|+++ |.||.+|..|+++|+.
T Consensus 82 N~~~-s~i~~~A~~l~~~f~~ 101 (103)
T cd05517 82 NEPG-SQVYKDANAIKKIFTA 101 (103)
T ss_pred CCCC-CHHHHHHHHHHHHHHh
Confidence 9977 9999999999999985
|
Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine. |
| >KOG4328|consensus | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.8e-19 Score=208.59 Aligned_cols=306 Identities=17% Similarity=0.205 Sum_probs=222.3
Q ss_pred eeeEEecCCCCcEEEEEEcCCC--CEEEEEECCCcEEEEECCCC----cEEEEEeCCCCCEEEEEEeCCC-CEEEEEeCC
Q psy9598 467 RQHYVNLGHLSAVFCVLFDKLG--EVIVTGADDLLIKLWRARDG----KLLATLRGCSGEISDIAIDNRN-ILLAAGTVD 539 (1915)
Q Consensus 467 ~~~~~l~gH~~~V~~vafspdg--~~LaTGs~Dg~I~IWd~~tg----~~~~~l~gH~~~I~~Lafspdg-~~LaSgs~D 539 (1915)
.......-|.+.|+|++|+|.. ++||+|..-|.|-+||+.+. .-+..+..|.++|.+|.|+|.+ ..+++.|.|
T Consensus 177 ~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyD 256 (498)
T KOG4328|consen 177 RILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYD 256 (498)
T ss_pred eecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccC
Confidence 3344566788999999999965 58899999999999999532 3456678999999999999954 578899999
Q ss_pred CcEEEEECCCCceE--EEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCC
Q psy9598 540 KTIRIWNLQTLAPI--SVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPG 617 (1915)
Q Consensus 540 gtIrVWDl~tg~~~--~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~ 617 (1915)
|+|++-|+.++..- ..+......+.++.|+.. ...++.|..=|.+.+||++++... ...+.-|
T Consensus 257 GtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e----~~~vl~~~~~G~f~~iD~R~~~s~-----------~~~~~lh 321 (498)
T KOG4328|consen 257 GTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAE----SRSVLFGDNVGNFNVIDLRTDGSE-----------YENLRLH 321 (498)
T ss_pred ceeeeeeecchhhHHHhhcCccceeeeeccccCC----CccEEEeecccceEEEEeecCCcc-----------chhhhhh
Confidence 99999999876543 333324456667777763 367777777779999999987531 1122345
Q ss_pred CCceEEEEECCCC-cEEEEEeCCCeEEEEEecCCCCCc-eeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCC
Q psy9598 618 NAHILCSSFSPGG-LFLATGSGDHHVRVYKMDGVDSPL-GILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCS 695 (1915)
Q Consensus 618 ~~~V~~l~fspdg-~~Lasgs~Dg~I~IwDl~~~~~~~-~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~ 695 (1915)
...|.+++++|.. .+||+|+.|++++|||++...... .+.....|...|.+..|||.|-.|+|.+.|..|+|||...-
T Consensus 322 ~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~ 401 (498)
T KOG4328|consen 322 KKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCI 401 (498)
T ss_pred hcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccc
Confidence 5689999999964 579999999999999997654433 25566789999999999999988999999999999997411
Q ss_pred ceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCC-CeEE-EEEc
Q psy9598 696 QWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTN-EVFV-LESH 773 (1915)
Q Consensus 696 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~-~V~s-l~~s 773 (1915)
. .. .............+.........|.|+..+|+++.. -..|-|+|...++.+..+..... .|.+ ..||
T Consensus 402 s---a~----~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~-~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~H 473 (498)
T KOG4328|consen 402 S---AK----DEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRY-PRPIDVFDGNGGQMVCELHDPESSTIPSVNEFH 473 (498)
T ss_pred c---cc----CCccceeeccCcccccccchhheeCCCccEEEEecc-CcceeEEcCCCCEEeeeccCccccccccceeec
Confidence 0 00 000000111112222233456789999999998887 77899999999998888765443 4444 4699
Q ss_pred cCCCCEEEEEecCceEEEEECC
Q psy9598 774 PFDSRVLLSAGHDGLIIIWDIL 795 (1915)
Q Consensus 774 p~dg~~LaSgs~DG~I~IWdl~ 795 (1915)
|.+..+++-++..|.|+||--.
T Consensus 474 P~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 474 PMRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred ccccceeccCCccceEEEEecC
Confidence 9433355555668899988654
|
|
| >cd05506 Bromo_plant1 Bromodomain, uncharacterized subfamily specific to plants | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.4e-21 Score=191.64 Aligned_cols=96 Identities=32% Similarity=0.538 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCCCC--CCCCccccccCccchhhHHhhhcCCCCCCHHHHHHHHHHHHHHhhhhcCCC
Q psy9598 1534 KNECREVLETLWVCPDSEPFRKPVDKL--DHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQNK 1611 (1915)
Q Consensus 1534 ~~~~~~ll~~l~~~~~s~~F~~pv~~~--~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~Dv~lif~Na~~yN~~~ 1611 (1915)
.++|..||+.|++++.+++|..||+.. ++|+||++|++||||+||++||+++.|.|+++|..||+|||.||+.||+++
T Consensus 2 ~~~c~~il~~l~~~~~~~~F~~pv~~~~~~~p~Y~~~I~~P~dl~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~yn~~~ 81 (99)
T cd05506 2 MKQCGTLLRKLMKHKWGWVFNAPVDVVALGLPDYFDIIKKPMDLGTVKKKLEKGEYSSPEEFAADVRLTFANAMRYNPPG 81 (99)
T ss_pred HHHHHHHHHHHHhCCCCccccCCCCccccCCCCHHHHHcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 578999999999999999999999854 799999999999999999999999999999999999999999999999988
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q psy9598 1612 RSKIYIMTTRLSEFAEEHL 1630 (1915)
Q Consensus 1612 ~s~i~~~a~~l~~~f~~~~ 1630 (1915)
|.+|.+|..|++.|+++|
T Consensus 82 -s~i~~~a~~l~~~fe~~w 99 (99)
T cd05506 82 -NDVHTMAKELLKIFETRW 99 (99)
T ss_pred -CHHHHHHHHHHHHHHHhC
Confidence 999999999999999876
|
Might function as a global transcription factor. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >cd05513 Bromo_brd7_like Bromodomain, brd7_like subgroup | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.5e-21 Score=187.53 Aligned_cols=93 Identities=24% Similarity=0.422 Sum_probs=89.1
Q ss_pred hHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCccccccCccchhhHHhhhcCCCCCCHHHHHHHHHHHHHHhhhhcCCCC
Q psy9598 1533 WKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQNKR 1612 (1915)
Q Consensus 1533 ~~~~~~~ll~~l~~~~~s~~F~~pv~~~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~Dv~lif~Na~~yN~~~~ 1612 (1915)
+++.|.+||+.|++++.+.+|+.||+..++||||++|++||||+||++||+++.|.|+++|.+||+|||.||++||+++
T Consensus 2 l~~~l~~il~~l~~~~~~~~F~~PV~~~~~pdY~~vIk~PmDL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~- 80 (98)
T cd05513 2 LQKALEQLIRQLQRKDPHGFFAFPVTDFIAPGYSSIIKHPMDFSTMKEKIKNNDYQSIEEFKDDFKLMCENAMKYNKPD- 80 (98)
T ss_pred HHHHHHHHHHHHHcCCccccccCcCCccccccHHHHHcCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCC-
Confidence 5678999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CHHHHHHHHHHHHH
Q psy9598 1613 SKIYIMTTRLSEFA 1626 (1915)
Q Consensus 1613 s~i~~~a~~l~~~f 1626 (1915)
|.+|.+|..|.+.-
T Consensus 81 s~~~~~A~~L~~~~ 94 (98)
T cd05513 81 TIYYKAAKKLLHSG 94 (98)
T ss_pred CHHHHHHHHHHHhh
Confidence 99999999997654
|
The BRD7 gene encodes a nuclear protein that has been shown to inhibit cell growth and the progression of the cell cycle by regulating cell-cycle genes at the transcriptional level. BRD7 has been identified as a gene involved in nasopharyngeal carcinoma. The protein interacts with acetylated histone H3 via its bromodomain. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >cd05499 Bromo_BDF1_2_II Bromodomain | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.7e-21 Score=191.25 Aligned_cols=95 Identities=35% Similarity=0.643 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHcC---CCCCCCCCCCCCC--CCCCccccccCccchhhHHhhhcCCCCCCHHHHHHHHHHHHHHhhhhcC
Q psy9598 1535 NECREVLETLWVC---PDSEPFRKPVDKL--DHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQ 1609 (1915)
Q Consensus 1535 ~~~~~ll~~l~~~---~~s~~F~~pv~~~--~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~Dv~lif~Na~~yN~ 1609 (1915)
+.|.+||+.|++. ..++||+.|||+. ++||||++|++||||+||++||+++.|.|+++|..||+|||.||+.||+
T Consensus 3 ~~c~~Il~~l~~~~~~~~s~~F~~pvd~~~~~~pdY~~~I~~P~dL~~I~~kl~~~~Y~s~~ef~~D~~li~~N~~~yn~ 82 (102)
T cd05499 3 KFCEEVLKELMKPKHSAYNWPFLDPVDPVALNIPNYFSIIKKPMDLGTISKKLQNGQYQSAKEFERDVRLIFKNCYTFNP 82 (102)
T ss_pred HHHHHHHHHHHcccCCcccchhcCCCCccccCCCCHHHHhcCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 5799999999984 5699999999977 9999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHH
Q psy9598 1610 NKRSKIYIMTTRLSEFAEEHL 1630 (1915)
Q Consensus 1610 ~~~s~i~~~a~~l~~~f~~~~ 1630 (1915)
++ |.+|.+|..|++.|+++|
T Consensus 83 ~~-s~~~~~a~~l~~~fe~~~ 102 (102)
T cd05499 83 EG-TDVYMMGHQLEEVFNDKW 102 (102)
T ss_pred CC-CHHHHHHHHHHHHHHHhC
Confidence 88 999999999999999875
|
BDF1/BDF2 like subfamily, restricted to fungi, repeat II. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >cd05498 Bromo_Brdt_II_like Bromodomain, Brdt_like subfamily, repeat II | Back alignment and domain information |
|---|
Probab=99.84 E-value=5e-21 Score=191.42 Aligned_cols=96 Identities=31% Similarity=0.544 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHcC---CCCCCCCCCCCCC--CCCCccccccCccchhhHHhhhcCCCCCCHHHHHHHHHHHHHHhhhhc
Q psy9598 1534 KNECREVLETLWVC---PDSEPFRKPVDKL--DHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYN 1608 (1915)
Q Consensus 1534 ~~~~~~ll~~l~~~---~~s~~F~~pv~~~--~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~Dv~lif~Na~~yN 1608 (1915)
.+.|.+||+.|+.+ +.++||+.||+.. ++|+||++|++||||+||++||++|.|.|+++|..||+|||.||+.||
T Consensus 2 ~~~c~~il~~l~~~~~~~~a~~F~~pv~~~~~~~p~Y~~~I~~Pmdl~~I~~kl~~~~Y~s~~ef~~D~~li~~Na~~yn 81 (102)
T cd05498 2 LKFCSGILKELFSKKHKAYAWPFYKPVDPEALGLHDYHDIIKHPMDLSTIKKKLDNREYADAQEFAADVRLMFSNCYKYN 81 (102)
T ss_pred hhHHHHHHHHHHhCCCccccCcccCcCCccccCCCcHHHHccCCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 57899999999999 7899999999854 799999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHH
Q psy9598 1609 QNKRSKIYIMTTRLSEFAEEHL 1630 (1915)
Q Consensus 1609 ~~~~s~i~~~a~~l~~~f~~~~ 1630 (1915)
+++ |.++.+|..|++.|+++|
T Consensus 82 ~~~-s~i~~~a~~l~~~fe~~~ 102 (102)
T cd05498 82 PPD-HPVHAMARKLQDVFEDRW 102 (102)
T ss_pred CCC-CHHHHHHHHHHHHHHHhC
Confidence 988 999999999999999875
|
Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >cd05525 Bromo_ASH1 Bromodomain; ASH1_like sub-family | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.9e-21 Score=189.32 Aligned_cols=96 Identities=27% Similarity=0.413 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHhcCCC------CCCCCCCCCCCCCCCccccCCCcCCHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhh
Q psy9598 118 WKNECREVLETLWVCPD------SEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRN 191 (1915)
Q Consensus 118 ~~~~~~~il~~l~~~~~------~~~F~~pvd~~~~pdY~~iIk~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~Lif~N~~~ 191 (1915)
+...|..||..|..+.+ ++||+++|++..+||||++|++||||+||++||.+|.|.|+++|..||.|||.||+.
T Consensus 3 l~~~l~~i~~~i~~~kd~~g~~~s~~F~~lp~k~~~pdYy~~I~~P~dL~tI~~kl~~~~Y~s~~ef~~D~~l~f~Na~~ 82 (106)
T cd05525 3 LAQVLKEICDAIITYKDSNGQSLAIPFINLPSKKKNPDYYERITDPVDLSTIEKQILTGYYKTPEAFDSDMLKVFRNAEK 82 (106)
T ss_pred HHHHHHHHHHHHHHhhccCCCcccHhhccCCCcccCCchhhhCCCCcCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Confidence 45678888888887655 699999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHH
Q psy9598 192 YNQNKRSKIYIMTTRLSEFAEEH 214 (1915)
Q Consensus 192 yN~~~~s~i~~~a~~l~~~f~~~ 214 (1915)
||+++ |.+|++|..|+++|+..
T Consensus 83 yn~~~-S~i~~~A~~L~~~f~~~ 104 (106)
T cd05525 83 YYGRK-SPIGRDVCRLRKAYYQA 104 (106)
T ss_pred HCCCC-CHHHHHHHHHHHHHHHc
Confidence 99977 99999999999999863
|
ASH1 (absent, small, or homeotic 1) is a member of the trithorax-group in Drosophila melanogaster, an epigenetic transcriptional regulator of HOX genes. Drosophila ASH1 has been shown to methylate specific lysines in histones H3 and H4. Mammalian ASH1 has been shown to methylate histone H3. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >cd05520 Bromo_polybromo_III Bromodomain, polybromo repeat III | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.9e-21 Score=189.82 Aligned_cols=92 Identities=27% Similarity=0.474 Sum_probs=84.2
Q ss_pred HHHHHHHHhcCC------CCCCCCCCCCCCCCCCccccCCCcCCHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhhcCC
Q psy9598 122 CREVLETLWVCP------DSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQN 195 (1915)
Q Consensus 122 ~~~il~~l~~~~------~~~~F~~pvd~~~~pdY~~iIk~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~Lif~N~~~yN~~ 195 (1915)
+..|++.|+.+. .++||.+||++..+||||+||++||||+||++||+++.|.++.+|+.||+|||.||+.||++
T Consensus 5 ~~~l~~~i~~~~~~~g~~~s~pF~~~p~~~~~PdYy~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~yN~~ 84 (103)
T cd05520 5 LWQLYDTIRNARNNQGQLLAEPFLKLPSKRKYPDYYQEIKNPISLQQIRTKLKNGEYETLEELEADLNLMFENAKRYNVP 84 (103)
T ss_pred HHHHHHHHHhhcCCCCCCccHhhhcCCCcccCCCHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 445666666544 47999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q psy9598 196 KRSKIYIMTTRLSEFAEEH 214 (1915)
Q Consensus 196 ~~s~i~~~a~~l~~~f~~~ 214 (1915)
+ |.+|.+|..|+++|+++
T Consensus 85 ~-s~i~~~A~~L~~~f~~~ 102 (103)
T cd05520 85 N-SRIYKDAEKLQKLMQAK 102 (103)
T ss_pred C-CHHHHHHHHHHHHHHHh
Confidence 7 99999999999999874
|
Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine. |
| >cd05518 Bromo_polybromo_IV Bromodomain, polybromo repeat IV | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.8e-21 Score=189.63 Aligned_cols=94 Identities=29% Similarity=0.492 Sum_probs=86.0
Q ss_pred HHHHHHHHHHhcC------CCCCCCCCCCCCCCCCCccccCCCcCCHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhhc
Q psy9598 120 NECREVLETLWVC------PDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYN 193 (1915)
Q Consensus 120 ~~~~~il~~l~~~------~~~~~F~~pvd~~~~pdY~~iIk~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~Lif~N~~~yN 193 (1915)
++|..|++.|.+. ..+.+|+.||++.++||||++|++||||+||++||.++.|.|+++|..||+|||.||+.||
T Consensus 3 ~~~~~l~~~v~~~~d~~gr~~~~~F~~~p~~~~~pdYy~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN 82 (103)
T cd05518 3 KRMLALFLYVLEYREGSGRRLCDLFMEKPSKKDYPDYYKIILEPIDLKTIEHNIRNDKYATEEELMDDFKLMFRNARHYN 82 (103)
T ss_pred HHHHHHHHHHHHhhccCCCcccHHHhcCCCcccCccHHHHcCCCcCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 4466777777664 4479999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHH
Q psy9598 194 QNKRSKIYIMTTRLSEFAEEH 214 (1915)
Q Consensus 194 ~~~~s~i~~~a~~l~~~f~~~ 214 (1915)
+++ |.||.+|..|+++|+++
T Consensus 83 ~~~-s~i~~~A~~le~~~~~~ 102 (103)
T cd05518 83 EEG-SQVYEDANILEKVLKEK 102 (103)
T ss_pred CCC-CHHHHHHHHHHHHHHhc
Confidence 977 99999999999999864
|
Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine. |
| >KOG0270|consensus | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.9e-19 Score=208.07 Aligned_cols=269 Identities=17% Similarity=0.286 Sum_probs=198.3
Q ss_pred EEEecccCCceeeeEEecCCCCcEEEEEEcC-------CCCEEEEEECCCcEEEEECCCC---cEEEE------------
Q psy9598 456 LMISSHKYSNLRQHYVNLGHLSAVFCVLFDK-------LGEVIVTGADDLLIKLWRARDG---KLLAT------------ 513 (1915)
Q Consensus 456 ~~i~~~~~~~~~~~~~l~gH~~~V~~vafsp-------dg~~LaTGs~Dg~I~IWd~~tg---~~~~~------------ 513 (1915)
+.+....-.++.+|+-+.-- ..-.|++|.- -|+|+|.|+.|..|.|||+.-. .+..+
T Consensus 154 vYVyn~~e~nlYvHHD~ilp-afPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~ 232 (463)
T KOG0270|consen 154 VYVYNEEEENLYVHHDFILP-AFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKK 232 (463)
T ss_pred EEEEcCCCcceeEecceecc-CcchhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhh
Confidence 33333334455555433321 2235777742 3789999999999999997521 11111
Q ss_pred ------EeCCCCCEEEEEEeCC-CCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCC
Q psy9598 514 ------LRGCSGEISDIAIDNR-NILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDG 586 (1915)
Q Consensus 514 ------l~gH~~~I~~Lafspd-g~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~Dg 586 (1915)
-.+|+..|.+|+|+.. .+.|||||.|.+|++||+.+|++..++..|.+.|.++.|+|.. ..+|++||.|+
T Consensus 233 ~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~---p~~LLsGs~D~ 309 (463)
T KOG0270|consen 233 GKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYE---PSVLLSGSYDG 309 (463)
T ss_pred cccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCC---ceEEEeccccc
Confidence 2379999999999875 5689999999999999999999999999999999999999964 58999999999
Q ss_pred eEEEEecccCcccc-ceeccCccccccccCCCCCceEEEEECCCC-cEEEEEeCCCeEEEEEecCCCCCceeEEeccCCC
Q psy9598 587 CIGFWKYKLDIDIS-KTVFHEPVMFNERIRPGNAHILCSSFSPGG-LFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSD 664 (1915)
Q Consensus 587 tI~iWDl~~~~~~~-~~~~~~~~~~~~~~~~~~~~V~~l~fspdg-~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~ 664 (1915)
+|.+.|.+...... ...+ .+.|-.++|.|.. ..+++++.||+|+-+|++... ..+.++.+|.+
T Consensus 310 ~V~l~D~R~~~~s~~~wk~-------------~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~--~~vwt~~AHd~ 374 (463)
T KOG0270|consen 310 TVALKDCRDPSNSGKEWKF-------------DGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPG--KPVWTLKAHDD 374 (463)
T ss_pred eEEeeeccCccccCceEEe-------------ccceEEEEecCCCceeEEEecCCceEEeeecCCCC--CceeEEEeccC
Confidence 99999998532211 1112 2778899999865 467788899999999997544 67889999999
Q ss_pred CeeEEEEcCCC-CEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecC
Q psy9598 665 KVDSIQWSHSH-LRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFN 743 (1915)
Q Consensus 665 ~V~sl~fspdg-~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~D 743 (1915)
.|.+|+++..- .+|++++.|+.|++|++......... .....-+...|.++.|+-.++++.++..
T Consensus 375 ~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~--------------~~~~~~~rl~c~~~~~~~a~~la~GG~k 440 (463)
T KOG0270|consen 375 EISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVK--------------EHSFKLGRLHCFALDPDVAFTLAFGGEK 440 (463)
T ss_pred CcceEEecCCCCcceeeccccceEEEEeecCCCCcccc--------------cccccccceeecccCCCcceEEEecCcc
Confidence 99999998754 47889999999999998754411100 0011112367778888877666555547
Q ss_pred CeEEEEECCCCceE
Q psy9598 744 FQIKIWDAFNGDLV 757 (1915)
Q Consensus 744 g~I~vwD~~tg~~i 757 (1915)
+.++|||+.+...+
T Consensus 441 ~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 441 AVLRVWDIFTNSPV 454 (463)
T ss_pred ceEEEeecccChhH
Confidence 78999999876544
|
|
| >cd05500 Bromo_BDF1_2_I Bromodomain | Back alignment and domain information |
|---|
Probab=99.83 E-value=1e-20 Score=188.89 Aligned_cols=99 Identities=31% Similarity=0.470 Sum_probs=93.7
Q ss_pred hhhHHHHHHHHHHHHcCCCCCCCCCCCCC--CCCCCccccccCccchhhHHhhhcCCCCCCHHHHHHHHHHHHHHhhhhc
Q psy9598 1531 FNWKNECREVLETLWVCPDSEPFRKPVDK--LDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYN 1608 (1915)
Q Consensus 1531 ~~~~~~~~~ll~~l~~~~~s~~F~~pv~~--~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~Dv~lif~Na~~yN 1608 (1915)
..+.+.|.++|+.|++++.++||+.||++ .++|+||++|++||||+||++||.+|.|.++.+|..||+|||.||+.||
T Consensus 3 ~~~~~~~~~ii~~l~~~~~a~~F~~pv~~~~~~~p~Y~~~I~~P~dL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN 82 (103)
T cd05500 3 KHQHKFLLSSIRSLKRLKDARPFLVPVDPVKLNIPHYPTIIKKPMDLGTIERKLKSNVYTSVEEFTADFNLMVDNCLTFN 82 (103)
T ss_pred HHHHHHHHHHHHHHHcCCCChhhcCCCCcccccCCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 45678999999999999999999999995 4899999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHH
Q psy9598 1609 QNKRSKIYIMTTRLSEFAEEHL 1630 (1915)
Q Consensus 1609 ~~~~s~i~~~a~~l~~~f~~~~ 1630 (1915)
+++ |.++.+|..|++.|++.+
T Consensus 83 ~~~-s~~~~~A~~l~~~fe~~~ 103 (103)
T cd05500 83 GPE-HPVSQMGKRLQAAFEKHL 103 (103)
T ss_pred CCC-CHHHHHHHHHHHHHHHhC
Confidence 988 999999999999999753
|
BDF1/BDF2 like subfamily, restricted to fungi, repeat I. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >cd05524 Bromo_polybromo_I Bromodomain, polybromo repeat I | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.5e-21 Score=191.47 Aligned_cols=102 Identities=21% Similarity=0.343 Sum_probs=95.6
Q ss_pred hHHHHHHHHHHHHcCCC------CCCCCCCCCCCCCCCccccccCccchhhHHhhhcCCCCCCHHHHHHHHHHHHHHhhh
Q psy9598 1533 WKNECREVLETLWVCPD------SEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRN 1606 (1915)
Q Consensus 1533 ~~~~~~~ll~~l~~~~~------s~~F~~pv~~~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~Dv~lif~Na~~ 1606 (1915)
..+.|.+||+.|+++.+ +.+|..+|++..+||||++|++||||+||++||.++.|.|+++|..||+|||+||+.
T Consensus 3 ~~~~c~~il~~l~~~~~~~g~~l~~~F~~~p~~~~~PdYy~iI~~Pmdl~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~ 82 (113)
T cd05524 3 PIAVCQELYDTIRNYKSEDGRILCESFIRVPKRRNEPEYYEVVSNPIDLLKIQQKLKTEEYDDVDDLTADFELLINNAKA 82 (113)
T ss_pred HHHHHHHHHHHHHhhcccCCCchhHHHhcCCCcccCCCHHHHhCCccCHHHHHHHhCcCCCCCHHHHHHHHHHHHHHHHH
Confidence 35789999999997655 468999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy9598 1607 YNQNKRSKIYIMTTRLSEFAEEHLRRLTV 1635 (1915)
Q Consensus 1607 yN~~~~s~i~~~a~~l~~~f~~~~~~~~~ 1635 (1915)
||+++ |.+|.+|..|+++|++.++++..
T Consensus 83 yN~~~-s~~~~~A~~L~~~f~~~~~~~~~ 110 (113)
T cd05524 83 YYKPD-SPEHKDACKLWELFLSARNEVLS 110 (113)
T ss_pred HCCCC-CHHHHHHHHHHHHHHHHHHHhhc
Confidence 99988 99999999999999999988764
|
Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine. |
| >cd05515 Bromo_polybromo_V Bromodomain, polybromo repeat V | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.7e-21 Score=189.81 Aligned_cols=97 Identities=29% Similarity=0.448 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHcCCC------CCCCCCCCCCCCCCCccccccCccchhhHHhhhcCCCCCCHHHHHHHHHHHHHHhhhh
Q psy9598 1534 KNECREVLETLWVCPD------SEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNY 1607 (1915)
Q Consensus 1534 ~~~~~~ll~~l~~~~~------s~~F~~pv~~~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~Dv~lif~Na~~y 1607 (1915)
.++|.+|++.|+.+.+ ++||+.||++.++||||++|++||||+||++||.++.|.|+++|..||+|||.||+.|
T Consensus 2 ~~~~~~~~~~i~~~~d~~~~~~a~~F~~~p~~~~~pdYy~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~l~~~Na~~y 81 (105)
T cd05515 2 QQKLWELYNAVKNYTDGRGRRLSLIFMRLPSKSEYPDYYDVIKKPIDMEKIRSKIEGNQYQSLDDMVSDFVLMFDNACKY 81 (105)
T ss_pred hHHHHHHHHHHHHhhCcCCCcccHHhccCCCcccCCcHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHH
Confidence 4689999999997655 7899999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHH
Q psy9598 1608 NQNKRSKIYIMTTRLSEFAEEHLR 1631 (1915)
Q Consensus 1608 N~~~~s~i~~~a~~l~~~f~~~~~ 1631 (1915)
|+++ |.+|.+|..|+++|.++.+
T Consensus 82 N~~~-s~i~~~A~~L~~~~~~~~~ 104 (105)
T cd05515 82 NEPD-SQIYKDALTLQKVLLETKR 104 (105)
T ss_pred CCCC-CHHHHHHHHHHHHHHHHHc
Confidence 9988 9999999999999987653
|
Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine. |
| >cd05512 Bromo_brd1_like Bromodomain; brd1_like subfamily | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.4e-21 Score=186.37 Aligned_cols=93 Identities=29% Similarity=0.463 Sum_probs=89.2
Q ss_pred hHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCccccccCccchhhHHhhhcCCCCCCHHHHHHHHHHHHHHhhhhcCCCC
Q psy9598 1533 WKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQNKR 1612 (1915)
Q Consensus 1533 ~~~~~~~ll~~l~~~~~s~~F~~pv~~~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~Dv~lif~Na~~yN~~~~ 1612 (1915)
|...|+.+|..|+.++.+++|+.||+..++||||++|++||||+||++||.++.|.|+++|..||+|||.||+.||.++
T Consensus 2 ~~~~l~~il~~l~~~~~~~~F~~pVd~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~- 80 (98)
T cd05512 2 LEVLLRKTLDQLQEKDTAEIFSEPVDLSEVPDYLDHIKQPMDFSTMRKKLESQRYRTLEDFEADFNLIINNCLAYNAKD- 80 (98)
T ss_pred HHHHHHHHHHHHHhCCCchhhcCCCCccccCCHHHHhcCCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCC-
Confidence 5577999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CHHHHHHHHHHHHH
Q psy9598 1613 SKIYIMTTRLSEFA 1626 (1915)
Q Consensus 1613 s~i~~~a~~l~~~f 1626 (1915)
|.+|++|..|++.-
T Consensus 81 s~~~~~A~~l~~~~ 94 (98)
T cd05512 81 TIFYRAAVRLRDQG 94 (98)
T ss_pred CHHHHHHHHHHHhh
Confidence 99999999998754
|
BRD1 is a mammalian gene which encodes for a nuclear protein assumed to be a transcriptional regulator. BRD1 has been implicated with brain development and susceptibility to schizophrenia and bipolar affective disorder. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >cd05525 Bromo_ASH1 Bromodomain; ASH1_like sub-family | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.1e-20 Score=187.75 Aligned_cols=96 Identities=27% Similarity=0.413 Sum_probs=90.5
Q ss_pred hHHHHHHHHHHHHcCCC------CCCCCCCCCCCCCCCccccccCccchhhHHhhhcCCCCCCHHHHHHHHHHHHHHhhh
Q psy9598 1533 WKNECREVLETLWVCPD------SEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRN 1606 (1915)
Q Consensus 1533 ~~~~~~~ll~~l~~~~~------s~~F~~pv~~~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~Dv~lif~Na~~ 1606 (1915)
+...|..|++.|..+++ |+||+.+|++.++||||++|++||||+||++||.+|.|.|+++|..||.|||.||+.
T Consensus 3 l~~~l~~i~~~i~~~kd~~g~~~s~~F~~lp~k~~~pdYy~~I~~P~dL~tI~~kl~~~~Y~s~~ef~~D~~l~f~Na~~ 82 (106)
T cd05525 3 LAQVLKEICDAIITYKDSNGQSLAIPFINLPSKKKNPDYYERITDPVDLSTIEKQILTGYYKTPEAFDSDMLKVFRNAEK 82 (106)
T ss_pred HHHHHHHHHHHHHHhhccCCCcccHhhccCCCcccCCchhhhCCCCcCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Confidence 55778999999987655 699999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHH
Q psy9598 1607 YNQNKRSKIYIMTTRLSEFAEEH 1629 (1915)
Q Consensus 1607 yN~~~~s~i~~~a~~l~~~f~~~ 1629 (1915)
||+++ |.||.+|..|+++|++.
T Consensus 83 yn~~~-S~i~~~A~~L~~~f~~~ 104 (106)
T cd05525 83 YYGRK-SPIGRDVCRLRKAYYQA 104 (106)
T ss_pred HCCCC-CHHHHHHHHHHHHHHHc
Confidence 99988 99999999999999864
|
ASH1 (absent, small, or homeotic 1) is a member of the trithorax-group in Drosophila melanogaster, an epigenetic transcriptional regulator of HOX genes. Drosophila ASH1 has been shown to methylate specific lysines in histones H3 and H4. Mammalian ASH1 has been shown to methylate histone H3. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >cd05517 Bromo_polybromo_II Bromodomain, polybromo repeat II | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.3e-21 Score=188.61 Aligned_cols=94 Identities=28% Similarity=0.456 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHcCCC------CCCCCCCCCCCCCCCccccccCccchhhHHhhhcCCCCCCHHHHHHHHHHHHHHhhhh
Q psy9598 1534 KNECREVLETLWVCPD------SEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNY 1607 (1915)
Q Consensus 1534 ~~~~~~ll~~l~~~~~------s~~F~~pv~~~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~Dv~lif~Na~~y 1607 (1915)
++.|.+|++.|+++.+ +++|..+|++.++||||++|++||||+||++||.++.|.++.+|..||+|||.||++|
T Consensus 2 ~~~~~~l~~~i~~~~d~~gr~~~~~F~~lp~~~~~pdYy~vI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~y 81 (103)
T cd05517 2 KQILEQLLEAVMTATDPSGRLISELFQKLPSKVLYPDYYAVIKEPIDLKTIAQRIQSGYYKSIEDMEKDLDLMVKNAKTF 81 (103)
T ss_pred hHHHHHHHHHHHHhhCcCCCChhHHHhcCCCCCCCCCHHHHcCCCcCHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 5789999999998766 6999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHH
Q psy9598 1608 NQNKRSKIYIMTTRLSEFAEE 1628 (1915)
Q Consensus 1608 N~~~~s~i~~~a~~l~~~f~~ 1628 (1915)
|+++ |.||.+|..|+++|+.
T Consensus 82 N~~~-s~i~~~A~~l~~~f~~ 101 (103)
T cd05517 82 NEPG-SQVYKDANAIKKIFTA 101 (103)
T ss_pred CCCC-CHHHHHHHHHHHHHHh
Confidence 9988 9999999999999975
|
Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine. |
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.1e-17 Score=202.74 Aligned_cols=354 Identities=26% Similarity=0.434 Sum_probs=268.6
Q ss_pred cccCCCeEEEecccCCceeeeEEecCCC-CcEEEEEE-cCCCC-EEEEEEC-CCcEEEEECCC-CcEEEEEeCCCCCEEE
Q psy9598 449 SGPLSRSLMISSHKYSNLRQHYVNLGHL-SAVFCVLF-DKLGE-VIVTGAD-DLLIKLWRARD-GKLLATLRGCSGEISD 523 (1915)
Q Consensus 449 tg~~d~~~~i~~~~~~~~~~~~~l~gH~-~~V~~vaf-spdg~-~LaTGs~-Dg~I~IWd~~t-g~~~~~l~gH~~~I~~ 523 (1915)
.++.++.+.+|...... .....+.++. ..+..+.+ ++++. +++..+. |+.+.+|++.. +.....+.+|...|.+
T Consensus 82 ~~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~ 160 (466)
T COG2319 82 SGSSDGTIKLWDLDNGE-KLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTS 160 (466)
T ss_pred EecCCCcEEEEEcCCCc-eeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEE
Confidence 34478888888766554 2344555543 47777777 88887 5555445 99999999988 8888999999999999
Q ss_pred EEEeCCCCEEEEEeC-CCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccce
Q psy9598 524 IAIDNRNILLAAGTV-DKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKT 602 (1915)
Q Consensus 524 Lafspdg~~LaSgs~-DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~ 602 (1915)
++|++++.++++++. |+.+++|++.++..+..+.+|...|.+++|+|.+ ..++++++.|+.|.+||...+.....
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~~~~~~~d~~i~~wd~~~~~~~~~- 236 (466)
T COG2319 161 LAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDG---GLLIASGSSDGTIRLWDLSTGKLLRS- 236 (466)
T ss_pred EEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCc---ceEEEEecCCCcEEEEECCCCcEEee-
Confidence 999999999999986 9999999999999999999999999999999743 12555569999999998774433221
Q ss_pred eccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEe
Q psy9598 603 VFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGS 682 (1915)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs 682 (1915)
.+..|...+ ...|++++.++++++.|+.+++|++..... .+..+.+|...|.++.|+|++..+++++
T Consensus 237 ----------~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 303 (466)
T COG2319 237 ----------TLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS--LLRTLSGHSSSVLSVAFSPDGKLLASGS 303 (466)
T ss_pred ----------ecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCc--EEEEEecCCccEEEEEECCCCCEEEEee
Confidence 122333443 338999998899999999999999954433 2333368899999999999888898899
Q ss_pred CCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeC
Q psy9598 683 RDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKG 762 (1915)
Q Consensus 683 ~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~g 762 (1915)
.|+.+.+|++.+........ ...+...+..+.|.+++..++.++..|+.+.+|++...........
T Consensus 304 ~d~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 369 (466)
T COG2319 304 SDGTVRLWDLETGKLLSSLT--------------LKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEG 369 (466)
T ss_pred CCCcEEEEEcCCCceEEEee--------------ecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecC
Confidence 99999999888776433221 1224446888888433356666644489999999988773333333
Q ss_pred CCCCeEEEEEccCCCCEEEE-EecCceEEEEECCCCccccceeeeeeecCCCC-cceEEEEEcCCCCEEEEEeCCCeEEE
Q psy9598 763 HTNEVFVLESHPFDSRVLLS-AGHDGLIIIWDILSSKQRGYKWFHNIVEGQGE-GALFDGKWSPDGTTCALTDSYGHLLV 840 (1915)
Q Consensus 763 H~~~V~sl~~sp~dg~~LaS-gs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~-~~V~~vafSpdg~~Lasg~~dG~I~I 840 (1915)
+.. +..+.+.+ + ..+++ ++.++.+.+|+...... ...+. .. ..+..+.+++++..++.++.++.+.+
T Consensus 370 ~~~-~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (466)
T COG2319 370 HSN-VLSVSFSP-D-GRVVSSGSTDGTVRLWDLSTGSL--LRNLD------GHTSRVTSLDFSPDGKSLASGSSDNTIRL 438 (466)
T ss_pred Cce-EEEEEECC-C-CCEEEEecCCCceEEEecccCee--eeecc------CCCCcEEEEEECCCCcEEEEecCCCcEEE
Confidence 332 88999998 7 55555 88999999999988766 33322 12 67889999999999999999999999
Q ss_pred EeCCC
Q psy9598 841 YGLGG 845 (1915)
Q Consensus 841 wdl~s 845 (1915)
|++.+
T Consensus 439 ~~~~~ 443 (466)
T COG2319 439 WDLKT 443 (466)
T ss_pred EeccC
Confidence 99988
|
|
| >KOG4227|consensus | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.9e-19 Score=202.42 Aligned_cols=301 Identities=17% Similarity=0.229 Sum_probs=226.0
Q ss_pred EEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCC------CcEEEEEe-CCCCCEEEEEEeCCCCEEEEEeCCCcE
Q psy9598 470 YVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARD------GKLLATLR-GCSGEISDIAIDNRNILLAAGTVDKTI 542 (1915)
Q Consensus 470 ~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~t------g~~~~~l~-gH~~~I~~Lafspdg~~LaSgs~DgtI 542 (1915)
+-+.+|.+.|++|.|+.+|++||+|+.|..++||++.. .+++.... .|.+.|.||+|...+++|++|+.+++|
T Consensus 50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~V 129 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTV 129 (609)
T ss_pred hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCccee
Confidence 45789999999999999999999999999999999753 34555443 355899999999999999999999999
Q ss_pred EEEECCCCceEEEeec--CCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCc
Q psy9598 543 RIWNLQTLAPISVLVG--HQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAH 620 (1915)
Q Consensus 543 rVWDl~tg~~~~~l~~--h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (1915)
.+.|+.+.+.+.++.. ..+.|..+..+|.. ++|++.+.+|.|.|||++.........+. ......
T Consensus 130 I~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~D----N~~~~~t~~~~V~~~D~Rd~~~~~~~~~~---------AN~~~~ 196 (609)
T KOG4227|consen 130 IKHDIETKQSIYVANENNNRGDVYHMDQHPTD----NTLIVVTRAKLVSFIDNRDRQNPISLVLP---------ANSGKN 196 (609)
T ss_pred EeeecccceeeeeecccCcccceeecccCCCC----ceEEEEecCceEEEEeccCCCCCCceeee---------cCCCcc
Confidence 9999999888877752 33599999999964 89999999999999999876532222211 112355
Q ss_pred eEEEEECCC-CcEEEEEeCCCeEEEEEecCCCCCcee----EEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCC
Q psy9598 621 ILCSSFSPG-GLFLATGSGDHHVRVYKMDGVDSPLGI----LEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCS 695 (1915)
Q Consensus 621 V~~l~fspd-g~~Lasgs~Dg~I~IwDl~~~~~~~~i----~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~ 695 (1915)
.+++.|+|. ..+|++.+..+-+.|||++....+... ..+......-.++.|+|+|+.|++--....-.+||+-+.
T Consensus 197 F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~ 276 (609)
T KOG4227|consen 197 FYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQ 276 (609)
T ss_pred ceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecc
Confidence 778899995 467888888999999999654332211 112222223357789999999998877777788898887
Q ss_pred ceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCC----------C-----------
Q psy9598 696 QWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFN----------G----------- 754 (1915)
Q Consensus 696 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~t----------g----------- 754 (1915)
.+.....+.... .......+.+++|-.+- .|++|+. +-.|++|.+.. |
T Consensus 277 R~~V~k~D~N~~---------GY~N~~T~KS~~F~~D~-~v~tGSD-~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~ 345 (609)
T KOG4227|consen 277 RCFVLKSDHNPN---------GYCNIKTIKSMTFIDDY-TVATGSD-HWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIF 345 (609)
T ss_pred cceeEeccCCCC---------cceeeeeeeeeeeecce-eeeccCc-ccceEEEecCCCccccCccccCcchhhCchhhe
Confidence 765544332211 11123456677776544 4777776 88999998742 1
Q ss_pred --ceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECC
Q psy9598 755 --DLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDIL 795 (1915)
Q Consensus 755 --~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~ 795 (1915)
..+.+|+||.+.++.|.|+| ...+|++.|-...++||.-.
T Consensus 346 i~~~~~VLrGHRSv~NQVRF~~-H~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 346 IEKELTVLRGHRSVPNQVRFSQ-HNNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred ecceeEEEecccccccceeecC-CcceEeccchhhheeccccc
Confidence 23567899999999999999 78899999999999999753
|
|
| >cd05529 Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like subfamily | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.9e-20 Score=193.29 Aligned_cols=102 Identities=30% Similarity=0.340 Sum_probs=96.4
Q ss_pred chhHHHHHHHHHHHHh---cCCCCCCCCCCCCCC-CCCCccccCCCcCCHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHh
Q psy9598 115 PFNWKNECREVLETLW---VCPDSEPFRKPVDKL-DHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSR 190 (1915)
Q Consensus 115 ~~~~~~~~~~il~~l~---~~~~~~~F~~pvd~~-~~pdY~~iIk~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~Lif~N~~ 190 (1915)
...++..|..+|.+|+ +++.++||..||+.. .+|+||++|++||||+||++||.++.|.++++|..||+|||.||+
T Consensus 22 ~~~~~~~i~~~l~~l~~~~~~~~~~~F~~pv~~~~~~p~Y~~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~Li~~Na~ 101 (128)
T cd05529 22 RDEERERLISGLDKLLLSLQLEIAEYFEYPVDLRAWYPDYWNRVPVPMDLETIRSRLENRYYRSLEALRHDVRLILSNAE 101 (128)
T ss_pred CHHHHHHHHHHHHHHHhcccCcccccccCCCCccccCCcHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 3567888999999999 899999999999988 999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCHHHHHHHHHHHHHHHHHHH
Q psy9598 191 NYNQNKRSKIYIMTTRLSEFAEEHLRR 217 (1915)
Q Consensus 191 ~yN~~~~s~i~~~a~~l~~~f~~~~~~ 217 (1915)
+||+++ |.++.+|..|+++|.++++.
T Consensus 102 ~yN~~~-s~i~~~A~~l~~~~~~~l~~ 127 (128)
T cd05529 102 TFNEPN-SEIAKKAKRLSDWLLRILSS 127 (128)
T ss_pred HHCCCC-CHHHHHHHHHHHHHHHHhcc
Confidence 999976 99999999999999988753
|
WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >cd05519 Bromo_SNF2 Bromodomain, SNF2-like subfamily, specific to fungi | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.2e-20 Score=188.32 Aligned_cols=97 Identities=29% Similarity=0.481 Sum_probs=91.4
Q ss_pred hHHHHHHHHHHHHcCCC------CCCCCCCCCCCCCCCccccccCccchhhHHhhhcCCCCCCHHHHHHHHHHHHHHhhh
Q psy9598 1533 WKNECREVLETLWVCPD------SEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRN 1606 (1915)
Q Consensus 1533 ~~~~~~~ll~~l~~~~~------s~~F~~pv~~~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~Dv~lif~Na~~ 1606 (1915)
+++.|++|++.|+++++ +++|..||++.++|+||++|++||||+||++||++|.|.|+.+|..||+|||.||+.
T Consensus 1 ~~~~~~~i~~~v~~~~~~~~~~~~~~F~~~p~~~~~pdYy~iIk~Pmdl~~I~~kl~~~~Y~s~~~f~~D~~li~~Na~~ 80 (103)
T cd05519 1 LKAAMLEIYDAVLNCEDETGRKLSELFLEKPSKKLYPDYYVIIKRPIALDQIKRRIEGRAYKSLEEFLEDFHLMFANART 80 (103)
T ss_pred CHHHHHHHHHHHHHhcCcCCCchhHHhcCCCCCCCCcCHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHH
Confidence 46789999999996554 899999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHHH
Q psy9598 1607 YNQNKRSKIYIMTTRLSEFAEEHL 1630 (1915)
Q Consensus 1607 yN~~~~s~i~~~a~~l~~~f~~~~ 1630 (1915)
||+++ |.+|.+|..|++.|++++
T Consensus 81 yn~~~-s~i~~~A~~l~~~f~~~~ 103 (103)
T cd05519 81 YNQEG-SIVYEDAVEMEKAFKKKY 103 (103)
T ss_pred HCCCC-CHHHHHHHHHHHHHHHhC
Confidence 99988 999999999999998763
|
SNF2 is a yeast protein involved in transcriptional activation, it is the catalytic component of the SWI/SNF ATP-dependent chromatin remodeling complex. The protein is essential for the regulation of gene expression (both positive and negative) of a large number of genes. The SWI/SNF complex changes chromatin structure by altering DNA-histone contacts within the nucleosome, which results in a re-positioning of the nucleosome and facilitates or represses the binding of gene-specific transcription factors. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >KOG0269|consensus | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.6e-20 Score=224.64 Aligned_cols=242 Identities=19% Similarity=0.335 Sum_probs=190.4
Q ss_pred cEEEEEEcC-CCCEEEEEECCCcEEEEECCC---CcEEEEEeCCCCCEEEEEEeCC-CCEEEEEeCCCcEEEEECCCCce
Q psy9598 478 AVFCVLFDK-LGEVIVTGADDLLIKLWRARD---GKLLATLRGCSGEISDIAIDNR-NILLAAGTVDKTIRIWNLQTLAP 552 (1915)
Q Consensus 478 ~V~~vafsp-dg~~LaTGs~Dg~I~IWd~~t---g~~~~~l~gH~~~I~~Lafspd-g~~LaSgs~DgtIrVWDl~tg~~ 552 (1915)
++..|.|+. +.++|||++..|.|.+||+.. .+++..|..|...|+++.|++. ..+|+|||.||+|++||++....
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S 168 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS 168 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc
Confidence 455667763 568999999999999999987 5677789999999999999884 56899999999999999999999
Q ss_pred EEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcE
Q psy9598 553 ISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLF 632 (1915)
Q Consensus 553 ~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~ 632 (1915)
..++.+....|..|.|+|. .+.+|+++...|.+++||++... .....+.+|.+.|.|+.|+|++.+
T Consensus 169 ~~t~~~nSESiRDV~fsp~---~~~~F~s~~dsG~lqlWDlRqp~-----------r~~~k~~AH~GpV~c~nwhPnr~~ 234 (839)
T KOG0269|consen 169 KSTFRSNSESIRDVKFSPG---YGNKFASIHDSGYLQLWDLRQPD-----------RCEKKLTAHNGPVLCLNWHPNREW 234 (839)
T ss_pred cccccccchhhhceeeccC---CCceEEEecCCceEEEeeccCch-----------hHHHHhhcccCceEEEeecCCCce
Confidence 9999999999999999994 57999999999999999998653 233345688999999999999999
Q ss_pred EEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCC-EEEEEe--CCCcEEEEEccCCceEEeeecccccCC
Q psy9598 633 LATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHL-RFVSGS--RDGTALIWYYKCSQWRFIRLDMNTCLP 709 (1915)
Q Consensus 633 Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~-~L~sgs--~DG~I~IWDl~~~~~~~~~~~~~~~~~ 709 (1915)
||+||.|+.|+||++.+. ....+.++ .-..+|..|.|-|... +|++++ .|-.|+|||++..-.
T Consensus 235 lATGGRDK~vkiWd~t~~-~~~~~~tI-nTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYI------------ 300 (839)
T KOG0269|consen 235 LATGGRDKMVKIWDMTDS-RAKPKHTI-NTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYI------------ 300 (839)
T ss_pred eeecCCCccEEEEeccCC-CccceeEE-eecceeeeeeeccCccchhhhhhccccceEEEEeeccccc------------
Confidence 999999999999999533 23333333 2346899999999866 566655 577899999985431
Q ss_pred CCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEE
Q psy9598 710 HTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWD 750 (1915)
Q Consensus 710 ~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD 750 (1915)
+......|...++.++|...+..++-.++.||+|..-.
T Consensus 301 ---P~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~ 338 (839)
T KOG0269|consen 301 ---PYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHL 338 (839)
T ss_pred ---cceeeeccCccccceeccCCCceeeEeecCccHHHHhh
Confidence 12234457788899999774444444444466655433
|
|
| >cd05511 Bromo_TFIID Bromodomain, TFIID-like subfamily | Back alignment and domain information |
|---|
Probab=99.83 E-value=2e-20 Score=188.69 Aligned_cols=103 Identities=35% Similarity=0.491 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHcCCCCCCCCCCCCCCCCCCccccccCccchhhHHhhhcCCCCCCHHHHHHHHHHHHHHhhhhcCCCCCH
Q psy9598 1535 NECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQNKRSK 1614 (1915)
Q Consensus 1535 ~~~~~ll~~l~~~~~s~~F~~pv~~~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~Dv~lif~Na~~yN~~~~s~ 1614 (1915)
..+.+|+..|++++.++||+.||++..+|+||++|++||||+||++||.++.|.++++|..||+|||.||+.||+++ |.
T Consensus 3 ~~l~~ii~~l~~~~~s~~F~~pv~~~~~p~Y~~~I~~PmdL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN~~~-s~ 81 (112)
T cd05511 3 FILDEIVNELKNLPDSWPFHTPVNKKKVPDYYKIIKRPMDLQTIRKKISKHKYQSREEFLEDIELIVDNSVLYNGPD-SV 81 (112)
T ss_pred HHHHHHHHHHHhCCCchhhcCCCChhhcccHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCC-CH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999988 99
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q psy9598 1615 IYIMTTRLSEFAEEHLRRLTVRWN 1638 (1915)
Q Consensus 1615 i~~~a~~l~~~f~~~~~~~~~~~~ 1638 (1915)
+|.+|..|.+.|+.++.++...+.
T Consensus 82 i~~~A~~l~~~~~~~~~~~~~~~~ 105 (112)
T cd05511 82 YTKKAKEMLELAEELLAEREEKLT 105 (112)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHH
Confidence 999999999999999999987654
|
Human TAFII250 (or TAF250) is the largest subunit of TFIID, a large multi-domain complex, which initiates the assembly of the transcription machinery. TAFII250 contains two bromodomains that specifically bind to acetylated histone H4. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >cd05520 Bromo_polybromo_III Bromodomain, polybromo repeat III | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.3e-20 Score=186.90 Aligned_cols=93 Identities=27% Similarity=0.489 Sum_probs=86.4
Q ss_pred HHHHHHHHHHcCCC------CCCCCCCCCCCCCCCccccccCccchhhHHhhhcCCCCCCHHHHHHHHHHHHHHhhhhcC
Q psy9598 1536 ECREVLETLWVCPD------SEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQ 1609 (1915)
Q Consensus 1536 ~~~~ll~~l~~~~~------s~~F~~pv~~~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~Dv~lif~Na~~yN~ 1609 (1915)
.+..|++.|+++++ ++||..||++.++||||++|++||||+||++||++|.|.++.+|+.||+|||.||+.||+
T Consensus 4 ~~~~l~~~i~~~~~~~g~~~s~pF~~~p~~~~~PdYy~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~yN~ 83 (103)
T cd05520 4 PLWQLYDTIRNARNNQGQLLAEPFLKLPSKRKYPDYYQEIKNPISLQQIRTKLKNGEYETLEELEADLNLMFENAKRYNV 83 (103)
T ss_pred hHHHHHHHHHhhcCCCCCCccHhhhcCCCcccCCCHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 35677777776553 889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHH
Q psy9598 1610 NKRSKIYIMTTRLSEFAEEH 1629 (1915)
Q Consensus 1610 ~~~s~i~~~a~~l~~~f~~~ 1629 (1915)
++ |.+|.+|..|+++|+++
T Consensus 84 ~~-s~i~~~A~~L~~~f~~~ 102 (103)
T cd05520 84 PN-SRIYKDAEKLQKLMQAK 102 (103)
T ss_pred CC-CHHHHHHHHHHHHHHHh
Confidence 88 99999999999999875
|
Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine. |
| >KOG1273|consensus | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.3e-19 Score=196.15 Aligned_cols=297 Identities=13% Similarity=0.177 Sum_probs=218.5
Q ss_pred EEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCcccc
Q psy9598 521 ISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDIS 600 (1915)
Q Consensus 521 I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~ 600 (1915)
-.|+.|++.|.+||+|+.||.|.|||+.|...-..+.+|..+|++++|++ +|+.|+++|.|..|.+||+..+..+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~----dgr~LltsS~D~si~lwDl~~gs~l~ 101 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSR----DGRKLLTSSRDWSIKLWDLLKGSPLK 101 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecC----CCCEeeeecCCceeEEEeccCCCcee
Confidence 78999999999999999999999999999998889999999999999999 55999999999999999999998888
Q ss_pred ceeccCccccccccCCCCCceEEEEECCCCc-EEEEEeCCCeEEEEEecCCCCCceeEEec--c-CCCCeeEEEEcCCCC
Q psy9598 601 KTVFHEPVMFNERIRPGNAHILCSSFSPGGL-FLATGSGDHHVRVYKMDGVDSPLGILEVE--E-HSDKVDSIQWSHSHL 676 (1915)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~-~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~--~-h~~~V~sl~fspdg~ 676 (1915)
.+.|. ++|+.+.|+|... ..++.-.+..-.+.++.... ..+.... + .+..-.+..|.+.|+
T Consensus 102 rirf~-------------spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~--h~~Lp~d~d~dln~sas~~~fdr~g~ 166 (405)
T KOG1273|consen 102 RIRFD-------------SPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPK--HSVLPKDDDGDLNSSASHGVFDRRGK 166 (405)
T ss_pred EEEcc-------------CccceeeeccccCCeEEEEEecCCcEEEEecCCc--eeeccCCCccccccccccccccCCCC
Confidence 88777 6788888888533 33333333334455552211 1111000 0 111122335889999
Q ss_pred EEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCC--
Q psy9598 677 RFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNG-- 754 (1915)
Q Consensus 677 ~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg-- 754 (1915)
++++|...|.+.++|..+.+++....- .....|..+-|+..|++|++-++ |..|++|++..-
T Consensus 167 yIitGtsKGkllv~~a~t~e~vas~ri---------------ts~~~IK~I~~s~~g~~liiNts-DRvIR~ye~~di~~ 230 (405)
T KOG1273|consen 167 YIITGTSKGKLLVYDAETLECVASFRI---------------TSVQAIKQIIVSRKGRFLIINTS-DRVIRTYEISDIDD 230 (405)
T ss_pred EEEEecCcceEEEEecchheeeeeeee---------------chheeeeEEEEeccCcEEEEecC-CceEEEEehhhhcc
Confidence 999999999999999998876543211 01356788999999999999999 999999997621
Q ss_pred -----c--eEEEeeC--CCCCeEEEEEccCCCCEEEEEec-CceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcC
Q psy9598 755 -----D--LVQVLKG--HTNEVFVLESHPFDSRVLLSAGH-DGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSP 824 (1915)
Q Consensus 755 -----~--~i~~l~g--H~~~V~sl~~sp~dg~~LaSgs~-DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSp 824 (1915)
+ +.+.++. ....=.+++|+. +|.+++.|+. -..++||.-..|.. ++.++ |.......++.|+|
T Consensus 231 ~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~-dgeYv~a~s~~aHaLYIWE~~~GsL--VKILh----G~kgE~l~DV~whp 303 (405)
T KOG1273|consen 231 EGRDGEVEPEHKLQDVVNKLQWKKCCFSG-DGEYVCAGSARAHALYIWEKSIGSL--VKILH----GTKGEELLDVNWHP 303 (405)
T ss_pred cCccCCcChhHHHHHHHhhhhhhheeecC-CccEEEeccccceeEEEEecCCcce--eeeec----CCchhheeeccccc
Confidence 1 1111110 111235678888 8998887764 46799999999888 66554 44446788999999
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCcccccCCCceeecCCCCeee
Q psy9598 825 DGTTCALTDSYGHLLVYGLGGFKRPQNIPRELFFHTDYRTLN 866 (1915)
Q Consensus 825 dg~~Lasg~~dG~I~Iwdl~s~~~~~~l~~~~~F~~d~~~Lv 866 (1915)
-...|++- ..|.|+||.... .+.--.|.||++.+.
T Consensus 304 ~rp~i~si-~sg~v~iw~~~~------~enwsafAPdFqele 338 (405)
T KOG1273|consen 304 VRPIIASI-ASGVVYIWAVVQ------VENWSAFAPDFQELE 338 (405)
T ss_pred ceeeeeec-cCCceEEEEeec------ccchhhcCchHHHHH
Confidence 98888888 669999998654 334446777776553
|
|
| >cd05518 Bromo_polybromo_IV Bromodomain, polybromo repeat IV | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.3e-20 Score=186.53 Aligned_cols=94 Identities=29% Similarity=0.492 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHcCC------CCCCCCCCCCCCCCCCccccccCccchhhHHhhhcCCCCCCHHHHHHHHHHHHHHhhhhc
Q psy9598 1535 NECREVLETLWVCP------DSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYN 1608 (1915)
Q Consensus 1535 ~~~~~ll~~l~~~~------~s~~F~~pv~~~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~Dv~lif~Na~~yN 1608 (1915)
+++..|++.|.++. .+.+|+.+|++.++||||++|++||||+||++||.++.|.|+++|..||+|||.||+.||
T Consensus 3 ~~~~~l~~~v~~~~d~~gr~~~~~F~~~p~~~~~pdYy~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN 82 (103)
T cd05518 3 KRMLALFLYVLEYREGSGRRLCDLFMEKPSKKDYPDYYKIILEPIDLKTIEHNIRNDKYATEEELMDDFKLMFRNARHYN 82 (103)
T ss_pred HHHHHHHHHHHHhhccCCCcccHHHhcCCCcccCccHHHHcCCCcCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 56778888887653 388999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHH
Q psy9598 1609 QNKRSKIYIMTTRLSEFAEEH 1629 (1915)
Q Consensus 1609 ~~~~s~i~~~a~~l~~~f~~~ 1629 (1915)
+++ |.||.+|..|+++|+++
T Consensus 83 ~~~-s~i~~~A~~le~~~~~~ 102 (103)
T cd05518 83 EEG-SQVYEDANILEKVLKEK 102 (103)
T ss_pred CCC-CHHHHHHHHHHHHHHhc
Confidence 988 99999999999999864
|
Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine. |
| >KOG0321|consensus | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.2e-19 Score=212.14 Aligned_cols=283 Identities=20% Similarity=0.303 Sum_probs=198.8
Q ss_pred ccCCCeEEEecccCCcee----eeEEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEE--EeCCCCCEEE
Q psy9598 450 GPLSRSLMISSHKYSNLR----QHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLAT--LRGCSGEISD 523 (1915)
Q Consensus 450 g~~d~~~~i~~~~~~~~~----~~~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~--l~gH~~~I~~ 523 (1915)
+.-+|.+.+.+.....+. ..+-...|.++|..+.|-|....|++++.|.+|++||+.++.++.. +.||.+.|.+
T Consensus 70 adE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS 149 (720)
T KOG0321|consen 70 ADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKS 149 (720)
T ss_pred ecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccch
Confidence 344556666544333333 1244578999999999999778899999999999999999998877 8999999999
Q ss_pred EEEeCCC-CEEEEEeCCCcEEEEECCCCc--------------------e-------EEEeecCCCCeEE---EEeccCc
Q psy9598 524 IAIDNRN-ILLAAGTVDKTIRIWNLQTLA--------------------P-------ISVLVGHQGIITG---VNFCPLE 572 (1915)
Q Consensus 524 Lafspdg-~~LaSgs~DgtIrVWDl~tg~--------------------~-------~~~l~~h~~~V~s---l~fsp~~ 572 (1915)
+||.+.+ ..|++|+.||.|.|||+.-.. + +.....|...|.+ +.+..
T Consensus 150 ~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fk-- 227 (720)
T KOG0321|consen 150 ECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFK-- 227 (720)
T ss_pred hhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEe--
Confidence 9999965 578999999999999985211 1 1111234444444 33333
Q ss_pred cCCCcEEEEEeC-CCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCC
Q psy9598 573 VNGFNYLASTST-DGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVD 651 (1915)
Q Consensus 573 ~~d~~~L~sgs~-DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~ 651 (1915)
|..+|++++. |+.|+|||++.........-.....+... ......+.++.....|.+|++.+.|+.|++|++.+..
T Consensus 228 --De~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~-skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s 304 (720)
T KOG0321|consen 228 --DESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTH-SKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLS 304 (720)
T ss_pred --ccceeeeccCCCcceEEEeecccccccccCCCcccCccCc-ccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccC
Confidence 4478998887 99999999998754332221111111111 1123557889999999999999999999999995432
Q ss_pred CCceeEEeccCCCCe--eEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEE
Q psy9598 652 SPLGILEVEEHSDKV--DSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAW 729 (1915)
Q Consensus 652 ~~~~i~~l~~h~~~V--~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~ 729 (1915)
...+..+.++...- ..-..+|++.+|++|+.|+.+.+|.+.+.+ .......+|...|++++|
T Consensus 305 -~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e---------------~~~~~l~Ght~eVt~V~w 368 (720)
T KOG0321|consen 305 -ISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPE---------------APPALLLGHTREVTTVRW 368 (720)
T ss_pred -cCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCcc---------------CChhhhhCcceEEEEEee
Confidence 22333333333221 122368999999999999999999887654 122345678899999999
Q ss_pred CCCCCE-EEEEEecCCeEEEEECCCC
Q psy9598 730 DASDRW-VITAINFNFQIKIWDAFNG 754 (1915)
Q Consensus 730 spdg~~-L~t~s~~Dg~I~vwD~~tg 754 (1915)
.|.... +++++. |..++||++..+
T Consensus 369 ~pS~~t~v~TcSd-D~~~kiW~l~~~ 393 (720)
T KOG0321|consen 369 LPSATTPVATCSD-DFRVKIWRLSNG 393 (720)
T ss_pred ccccCCCceeecc-CcceEEEeccCc
Confidence 987543 555555 999999998654
|
|
| >COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.7e-20 Score=231.51 Aligned_cols=217 Identities=24% Similarity=0.352 Sum_probs=180.0
Q ss_pred HHHHHHHHHHHHHhc---CCCccCCCCCCCCCCCCCccccccCCCCCHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhh
Q psy9598 1372 DATCEKIITGLEEVM---GLSVAEPFLVPVDISQYPAYAYVVEYPVDLTTLRARFQNRFYRRITSAQFDVRYLAANAEKF 1448 (1915)
Q Consensus 1372 ~~~~~~i~~~~~~~~---~~~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~tI~~rl~~~~Y~~~~~~~~D~~l~~~Na~~y 1448 (1915)
.+.+..|...+.++. ++....+|+.+|+...+|+||.||+.||||.+|+++|+++.|.++++|..||.|||.||++|
T Consensus 144 ~~~~~~i~~~~~~~~~~~~~~~s~~F~~~p~k~~~PdYy~iIk~Pm~L~~i~kkl~~~~Y~s~eef~~D~~lM~~N~~~y 223 (371)
T COG5076 144 YADNKAIAKFKKQLFLRDGRFLSSIFLGLPSKREYPDYYEIIKSPMDLLTIQKKLKNGRYKSFEEFVSDLNLMFDNCKLY 223 (371)
T ss_pred HHHHHHHHHHHHHhhcccccccccccccCCccccCCChheeecchhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhc
Confidence 456666666666654 67788999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHhCCCCCCccchhhhhcccccCCCChhhhhhhhhhhccccCCcchhhhhHHHhhhhhcC
Q psy9598 1449 NEPHSNIVKYARIITDLLLRIIKEPNPVDVPVVYHELLQNYETSSSEEEEEEDSKSRQRRVRPTAVTRAQREAMNQKKLK 1528 (1915)
Q Consensus 1449 N~~~s~i~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1528 (1915)
|+|+|.++.+|+.|++.+...+...+...+......... ...
T Consensus 224 N~~~s~v~~~a~~l~~~~~~~i~~~~~~~~~~~~~~~~~-----------------------~~~--------------- 265 (371)
T COG5076 224 NGPDSSVYVDAKELEKYFLKLIEEIPEEMLELSIKPGRE-----------------------ERE--------------- 265 (371)
T ss_pred cCCCcchhhhhHHHHHHHHHHHHhccccchhhccCcccc-----------------------ccc---------------
Confidence 999999999999999999999997543322211100000 000
Q ss_pred CchhhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCccccccCccchhhHHhhhcCCCCCCHHHHHHHHHHHHHHhhhhc
Q psy9598 1529 RPFNWKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYN 1608 (1915)
Q Consensus 1529 ~~~~~~~~~~~ll~~l~~~~~s~~F~~pv~~~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~Dv~lif~Na~~yN 1608 (1915)
.+-..++.....+...|+|..+++....|+|+++|..+|++.|.+-++..+.|...++|..|..++|.||..||
T Consensus 266 ------~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (371)
T COG5076 266 ------ERESVLITNSQAHVGAWPFLRPVSDEEVPDYYKDIRDPMDLSTKELKLRNNYYRPEETFVRDAKLFFDNCVMYN 339 (371)
T ss_pred ------cchhhcccccccccccccccccCCcccccchhhhhhcccccccchhhhhcccCCCccccccccchhhhcccccc
Confidence 01122333445667799999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH
Q psy9598 1609 QNKRSKIYIMTTRLSEFAEEHLRRL 1633 (1915)
Q Consensus 1609 ~~~~s~i~~~a~~l~~~f~~~~~~~ 1633 (1915)
... ..++.-+..+..++....+..
T Consensus 340 ~~~-~~~~~~~~~~~~~~~~~~~~~ 363 (371)
T COG5076 340 GEV-TDYYKNANVLEDFVIKKTRLI 363 (371)
T ss_pred hhh-hhhhhhccchhhhHhhhhhhh
Confidence 977 888888888888887766654
|
|
| >KOG0302|consensus | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.4e-19 Score=198.38 Aligned_cols=214 Identities=19% Similarity=0.309 Sum_probs=177.8
Q ss_pred eEEecCCCCcEEEEEEcCCC--CEEEEEECCCcEEEEECCC----------------CcEEEEEeCCCCCEEEEEEeCCC
Q psy9598 469 HYVNLGHLSAVFCVLFDKLG--EVIVTGADDLLIKLWRARD----------------GKLLATLRGCSGEISDIAIDNRN 530 (1915)
Q Consensus 469 ~~~l~gH~~~V~~vafspdg--~~LaTGs~Dg~I~IWd~~t----------------g~~~~~l~gH~~~I~~Lafspdg 530 (1915)
.....+|.+.|+-+..++-| .+.|+-+..|.|.||++.. .+++.++.+|.+.=+.|+|||-.
T Consensus 144 ~~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~ 223 (440)
T KOG0302|consen 144 EMKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIK 223 (440)
T ss_pred cccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccc
Confidence 34556888999998888755 5566667789999999742 35788999999999999999932
Q ss_pred -CEEEEEeCCCcEEEEECCCCceE---EEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccC
Q psy9598 531 -ILLAAGTVDKTIRIWNLQTLAPI---SVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHE 606 (1915)
Q Consensus 531 -~~LaSgs~DgtIrVWDl~tg~~~---~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~ 606 (1915)
..|+||..-+.|++|...+|.-. ..+.+|+..|-.|+|+|.. ...|++||.||+|+|||++.+.....+..
T Consensus 224 ~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE---~~vfaScS~DgsIrIWDiRs~~~~~~~~~-- 298 (440)
T KOG0302|consen 224 TGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTE---DGVFASCSCDGSIRIWDIRSGPKKAAVST-- 298 (440)
T ss_pred ccccccCccccceEeeeeccCceeecCccccccccchhhhccCCcc---CceEEeeecCceEEEEEecCCCccceeEe--
Confidence 35888988899999999886532 2466899999999999954 58999999999999999998843333222
Q ss_pred ccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCC-CEEEEEeCCC
Q psy9598 607 PVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSH-LRFVSGSRDG 685 (1915)
Q Consensus 607 ~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg-~~L~sgs~DG 685 (1915)
..|.+.|+.++|+..-.+||+|+.||+++|||++.......+..+.-|..+|++|.|+|.. ..|++++.|.
T Consensus 299 --------kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~ 370 (440)
T KOG0302|consen 299 --------KAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDN 370 (440)
T ss_pred --------eccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCC
Confidence 3677899999999988899999999999999998877778889999999999999999864 5788999999
Q ss_pred cEEEEEccCC
Q psy9598 686 TALIWYYKCS 695 (1915)
Q Consensus 686 ~I~IWDl~~~ 695 (1915)
.|.|||+...
T Consensus 371 QitiWDlsvE 380 (440)
T KOG0302|consen 371 QITIWDLSVE 380 (440)
T ss_pred cEEEEEeecc
Confidence 9999998643
|
|
| >KOG0267|consensus | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.6e-20 Score=224.88 Aligned_cols=256 Identities=21% Similarity=0.356 Sum_probs=220.2
Q ss_pred CCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEE
Q psy9598 488 GEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVN 567 (1915)
Q Consensus 488 g~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~ 567 (1915)
+-+++++..+..++||+... +..|...|.|+..-..++.+++|+.|..+-+|.+....++..|.+|..+|.||.
T Consensus 4 ~~~~m~~~~~t~Lr~~~~~~------~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~ 77 (825)
T KOG0267|consen 4 MEFLMKTKRATKLRVWDTRE------FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLT 77 (825)
T ss_pred ccccceeeeeeccccccchh------hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeee
Confidence 44556666667788888643 456888999999877889999999999999999988888888999999999999
Q ss_pred eccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEe
Q psy9598 568 FCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKM 647 (1915)
Q Consensus 568 fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl 647 (1915)
|++.. .+|++|+.+|+|++||+.....+. .+.+|...+.++.|+|-|.+++.|+.|+.+++||+
T Consensus 78 f~~~E----~LlaagsasgtiK~wDleeAk~vr------------tLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~ 141 (825)
T KOG0267|consen 78 FDTSE----RLLAAGSASGTIKVWDLEEAKIVR------------TLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDI 141 (825)
T ss_pred cCcch----hhhcccccCCceeeeehhhhhhhh------------hhhccccCcceeeeccceEEeccccccccceehhh
Confidence 99854 899999999999999998775443 33456788999999999999999999999999999
Q ss_pred cCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEE
Q psy9598 648 DGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMV 727 (1915)
Q Consensus 648 ~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v 727 (1915)
+ ...+.+.+.+|...|.++.|+|+|.++++|+.|.+++|||+..+... ..+..|...+..+
T Consensus 142 R---k~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~----------------~ef~~~e~~v~sl 202 (825)
T KOG0267|consen 142 R---KKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLS----------------KEFKSHEGKVQSL 202 (825)
T ss_pred h---ccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccc----------------ccccccccccccc
Confidence 4 34567788899999999999999999999999999999999877632 2334577889999
Q ss_pred EECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEEecC
Q psy9598 728 AWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHD 786 (1915)
Q Consensus 728 a~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~D 786 (1915)
.|+|..-+++.|+. |++|++||+.+.+.+.........|.++.|+| ++..+++|...
T Consensus 203 e~hp~e~Lla~Gs~-d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~-~~~~~~~G~q~ 259 (825)
T KOG0267|consen 203 EFHPLEVLLAPGSS-DRTVRFWDLETFEVISSGKPETDGVRSLAFNP-DGKIVLSGEQI 259 (825)
T ss_pred ccCchhhhhccCCC-CceeeeeccceeEEeeccCCccCCceeeeecC-CceeeecCchh
Confidence 99999888888888 99999999999999999988889999999999 88888887654
|
|
| >cd05529 Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like subfamily | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.9e-20 Score=188.76 Aligned_cols=103 Identities=45% Similarity=0.769 Sum_probs=98.5
Q ss_pred CCHHHHHHHHHHHHHhc---CCCccCCCCCCCCCC-CCCccccccCCCCCHHHHHHHhcCCCCCCHHHHHHHHHHHHHhh
Q psy9598 1370 DRDATCEKIITGLEEVM---GLSVAEPFLVPVDIS-QYPAYAYVVEYPVDLTTLRARFQNRFYRRITSAQFDVRYLAANA 1445 (1915)
Q Consensus 1370 ~~~~~~~~i~~~~~~~~---~~~~~~~F~~pv~~~-~~p~Y~~~I~~PmdL~tI~~rl~~~~Y~~~~~~~~D~~l~~~Na 1445 (1915)
..+..|.+|+..+++++ ++..+.+|..||++. .+|+||.+|++||||+||++||++++|+++++|..||+||+.||
T Consensus 21 ~~~~~~~~i~~~l~~l~~~~~~~~~~~F~~pv~~~~~~p~Y~~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~Li~~Na 100 (128)
T cd05529 21 IRDEERERLISGLDKLLLSLQLEIAEYFEYPVDLRAWYPDYWNRVPVPMDLETIRSRLENRYYRSLEALRHDVRLILSNA 100 (128)
T ss_pred CCHHHHHHHHHHHHHHHhcccCcccccccCCCCccccCCcHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 34678899999999999 999999999999999 99999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCHHHHHHHHHHHHHHHHHhC
Q psy9598 1446 EKFNEPHSNIVKYARIITDLLLRIIKE 1472 (1915)
Q Consensus 1446 ~~yN~~~s~i~~~a~~l~~~~~~~~~~ 1472 (1915)
++||+++|.|++.|..|.++|.+.+..
T Consensus 101 ~~yN~~~s~i~~~A~~l~~~~~~~l~~ 127 (128)
T cd05529 101 ETFNEPNSEIAKKAKRLSDWLLRILSS 127 (128)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999988764
|
WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >KOG2445|consensus | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.6e-18 Score=190.17 Aligned_cols=261 Identities=20% Similarity=0.294 Sum_probs=195.0
Q ss_pred eCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCC----CceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEE
Q psy9598 515 RGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQT----LAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGF 590 (1915)
Q Consensus 515 ~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~t----g~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~i 590 (1915)
.+|..-|.|+.|.+.|+.+|+|+.|++|+|||... ..+....+.|.+.|..|.|.+.. -|+.++++|.|+++.|
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPE--fGqvvA~cS~Drtv~i 87 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPE--FGQVVATCSYDRTVSI 87 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCcc--ccceEEEEecCCceee
Confidence 57899999999999999999999999999999643 45677888999999999998744 6899999999999999
Q ss_pred EecccCccccceecc-CccccccccCCCCCceEEEEECCC--CcEEEEEeCCCeEEEEEecCCC---CCceeEEe-----
Q psy9598 591 WKYKLDIDISKTVFH-EPVMFNERIRPGNAHILCSSFSPG--GLFLATGSGDHHVRVYKMDGVD---SPLGILEV----- 659 (1915)
Q Consensus 591 WDl~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~~l~fspd--g~~Lasgs~Dg~I~IwDl~~~~---~~~~i~~l----- 659 (1915)
|.-.... ...+ ..-.....+....+.|+.+.|.|. |-.||+++.||.|+||+.-... .......+
T Consensus 88 WEE~~~~----~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~ 163 (361)
T KOG2445|consen 88 WEEQEKS----EEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVID 163 (361)
T ss_pred eeecccc----cccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccC
Confidence 9753111 0000 011112233445688999999995 7789999999999999873221 11111122
Q ss_pred --ccCCCCeeEEEEcCC---CCEEEEEeCC-----CcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEE
Q psy9598 660 --EEHSDKVDSIQWSHS---HLRFVSGSRD-----GTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAW 729 (1915)
Q Consensus 660 --~~h~~~V~sl~fspd---g~~L~sgs~D-----G~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~ 729 (1915)
..+.....||.|++. ..+|++|+.+ +.++||....+.... .......++...|+.|+|
T Consensus 164 pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw------------~kva~L~d~~dpI~di~w 231 (361)
T KOG2445|consen 164 PPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKW------------LKVAELPDHTDPIRDISW 231 (361)
T ss_pred CcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCccee------------eeehhcCCCCCcceeeee
Confidence 246678889999975 3478888766 578999765443111 112233468899999999
Q ss_pred CCCC----CEEEEEEecCCeEEEEECCCC--------------------ceEEEeeCCCCCeEEEEEccCCCCEEEEEec
Q psy9598 730 DASD----RWVITAINFNFQIKIWDAFNG--------------------DLVQVLKGHTNEVFVLESHPFDSRVLLSAGH 785 (1915)
Q Consensus 730 spdg----~~L~t~s~~Dg~I~vwD~~tg--------------------~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~ 785 (1915)
.|+- ..|++++. || |+||.+... +.+..+.+|.+.|+.+.|+- .|.+|++.|.
T Consensus 232 APn~Gr~y~~lAvA~k-Dg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNm-tGtiLsStGd 308 (361)
T KOG2445|consen 232 APNIGRSYHLLAVATK-DG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNM-TGTILSSTGD 308 (361)
T ss_pred ccccCCceeeEEEeec-Cc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEee-eeeEEeecCC
Confidence 9973 45777777 99 999998621 34566789999999999998 9999999999
Q ss_pred CceEEEEECCC
Q psy9598 786 DGLIIIWDILS 796 (1915)
Q Consensus 786 DG~I~IWdl~s 796 (1915)
||+|++|...-
T Consensus 309 DG~VRLWkany 319 (361)
T KOG2445|consen 309 DGCVRLWKANY 319 (361)
T ss_pred Cceeeehhhhh
Confidence 99999997654
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.9e-16 Score=196.62 Aligned_cols=364 Identities=26% Similarity=0.437 Sum_probs=275.7
Q ss_pred EecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCc-EEEEEeCCCC-CEEEEEE-eCCCC-EEEEEeC-CCcEEEE
Q psy9598 471 VNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGK-LLATLRGCSG-EISDIAI-DNRNI-LLAAGTV-DKTIRIW 545 (1915)
Q Consensus 471 ~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~-~~~~l~gH~~-~I~~Laf-spdg~-~LaSgs~-DgtIrVW 545 (1915)
.+.+|...|.++.|.+.+..+++++.|+.|.+|+...+. .+..+.++.. .+..+.+ ++++. +++..+. |+.+.+|
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 139 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW 139 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence 567899999999999999999999999999999998887 7777777544 7887777 78777 5555444 9999999
Q ss_pred ECCC-CceEEEeecCCCCeEEEEeccCccCCCcEEEEEeC-CCeEEEEecccCccccceeccCccccccccCCCCCceEE
Q psy9598 546 NLQT-LAPISVLVGHQGIITGVNFCPLEVNGFNYLASTST-DGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILC 623 (1915)
Q Consensus 546 Dl~t-g~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~-DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~ 623 (1915)
++.. +.....+..|...|.+++|+|.. .++++++. |+.+++|++..+..+... ..|...|.+
T Consensus 140 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~v~~ 203 (466)
T COG2319 140 DLSTPGKLIRTLEGHSESVTSLAFSPDG----KLLASGSSLDGTIKLWDLRTGKPLSTL------------AGHTDPVSS 203 (466)
T ss_pred EecCCCeEEEEEecCcccEEEEEECCCC----CEEEecCCCCCceEEEEcCCCceEEee------------ccCCCceEE
Confidence 9998 88889999999999999999954 58888885 999999999874322222 236788999
Q ss_pred EEECCCCc-EEEEEeCCCeEEEEEecCCCCCceeE-EeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEee
Q psy9598 624 SSFSPGGL-FLATGSGDHHVRVYKMDGVDSPLGIL-EVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIR 701 (1915)
Q Consensus 624 l~fspdg~-~Lasgs~Dg~I~IwDl~~~~~~~~i~-~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~ 701 (1915)
++|+|++. .+++++.|+.|++||.. ....+. .+.+|...+ ...|++++.++++++.|+.+++|++.........
T Consensus 204 ~~~~~~~~~~~~~~~~d~~i~~wd~~---~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 279 (466)
T COG2319 204 LAFSPDGGLLIASGSSDGTIRLWDLS---TGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRT 279 (466)
T ss_pred EEEcCCcceEEEEecCCCcEEEEECC---CCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEE
Confidence 99999998 55555999999999874 334444 578888876 4489999989999999999999999876531100
Q ss_pred ecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEee--CCCCCeEEEEEccCCCCE
Q psy9598 702 LDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLK--GHTNEVFVLESHPFDSRV 779 (1915)
Q Consensus 702 ~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~--gH~~~V~sl~~sp~dg~~ 779 (1915)
...|...|.++.|+|++..+++++. |+.+.+|+..+........ +|...|..+.| +.++..
T Consensus 280 ---------------~~~~~~~v~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 342 (466)
T COG2319 280 ---------------LSGHSSSVLSVAFSPDGKLLASGSS-DGTVRLWDLETGKLLSSLTLKGHEGPVSSLSF-SPDGSL 342 (466)
T ss_pred ---------------EecCCccEEEEEECCCCCEEEEeeC-CCcEEEEEcCCCceEEEeeecccCCceEEEEE-CCCCCE
Confidence 0235778999999999999998666 7889999999888777776 88888999999 524355
Q ss_pred EEEE-ecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEE-EeCCCeEEEEeCCCCcccccCCC---
Q psy9598 780 LLSA-GHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCAL-TDSYGHLLVYGLGGFKRPQNIPR--- 854 (1915)
Q Consensus 780 LaSg-s~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Las-g~~dG~I~Iwdl~s~~~~~~l~~--- 854 (1915)
++.+ ..|+.+.+|++..... ..... ....+..+.|++ ...++. +..++.+.+|++........+..
T Consensus 343 ~~~~~~~d~~~~~~~~~~~~~--~~~~~------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (466)
T COG2319 343 LVSGGSDDGTIRLWDLRTGKP--LKTLE------GHSNVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTS 413 (466)
T ss_pred EEEeecCCCcEEeeecCCCce--eEEec------CCceEEEEEECC-CCCEEEEecCCCceEEEecccCeeeeeccCCCC
Confidence 5555 6889999999987652 22211 112288899988 544444 68889999999998776544443
Q ss_pred ---ceeecCCCCeeee-cCCCccceeeccc
Q psy9598 855 ---ELFFHTDYRTLNR-PNGLFEPTYDEVT 880 (1915)
Q Consensus 855 ---~~~F~~d~~~Lv~-~~~~~~~v~D~~t 880 (1915)
...+..++..++. .....+.+|+..+
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 414 RVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred cEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence 2455566665553 2333345666555
|
|
| >KOG1034|consensus | Back alignment and domain information |
|---|
Probab=99.81 E-value=1e-18 Score=194.73 Aligned_cols=305 Identities=18% Similarity=0.251 Sum_probs=222.4
Q ss_pred EecCCCCcEEEEEEcC-----CCCEEEEEECCCcEEEEECCCC---cEEEEEe--CCCCCEEEEEEeCC----CCEEEEE
Q psy9598 471 VNLGHLSAVFCVLFDK-----LGEVIVTGADDLLIKLWRARDG---KLLATLR--GCSGEISDIAIDNR----NILLAAG 536 (1915)
Q Consensus 471 ~l~gH~~~V~~vafsp-----dg~~LaTGs~Dg~I~IWd~~tg---~~~~~l~--gH~~~I~~Lafspd----g~~LaSg 536 (1915)
...+|..+|+.++|.+ .-..+||.|.+ .|.||..... .+++++. .|......++|+-+ +-+||+|
T Consensus 33 l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~-rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~ 111 (385)
T KOG1034|consen 33 LKEDHNKPIFGVAFNSFLGCDEPQVFATVGGN-RVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAG 111 (385)
T ss_pred hhccCCCccceeeeehhcCCCCCceEEEeCCc-EEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEee
Confidence 3468999999999984 23456666654 8889987543 3444442 36777888899764 4489999
Q ss_pred eCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCC
Q psy9598 537 TVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRP 616 (1915)
Q Consensus 537 s~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~ 616 (1915)
+.-|.|+|.|+.++++...+.+|.+.|+.|.|+|.. .++|++||.|.+|++|++.+..++..+. ...+
T Consensus 112 G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~---~qlvls~SkD~svRlwnI~~~~Cv~VfG---------G~eg 179 (385)
T KOG1034|consen 112 GYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDR---PQLVLSASKDHSVRLWNIQTDVCVAVFG---------GVEG 179 (385)
T ss_pred cceeEEEEEecchhhhccceeccCccchhhhcCCCC---CcEEEEecCCceEEEEeccCCeEEEEec---------cccc
Confidence 999999999999999999999999999999999964 4899999999999999999997755443 2347
Q ss_pred CCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCC------------------------CCceeE-EeccCCCCeeEEEE
Q psy9598 617 GNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVD------------------------SPLGIL-EVEEHSDKVDSIQW 671 (1915)
Q Consensus 617 ~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~------------------------~~~~i~-~l~~h~~~V~sl~f 671 (1915)
|...|.++.|+++|.+|+++|.|.+|++|++.... .....+ +..-|...|.|+.|
T Consensus 180 HrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw 259 (385)
T KOG1034|consen 180 HRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRW 259 (385)
T ss_pred ccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHH
Confidence 88999999999999999999999999999996110 000111 23458888888888
Q ss_pred cCCCCEEEEEeCCCcEEEEEcc-CCceEEeeecccccCCCCccccccccccccE--EEEEECCCCCEEEEEEecCCeEEE
Q psy9598 672 SHSHLRFVSGSRDGTALIWYYK-CSQWRFIRLDMNTCLPHTKETSDETNKKIKV--TMVAWDASDRWVITAINFNFQIKI 748 (1915)
Q Consensus 672 spdg~~L~sgs~DG~I~IWDl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V--~~va~spdg~~L~t~s~~Dg~I~v 748 (1915)
- |.++++-|-++.|..|... -.+-........ ..........-....| ...+|++-++.|+++.. .|.|.+
T Consensus 260 ~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~e---s~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq-~g~v~v 333 (385)
T KOG1034|consen 260 F--GDFILSKSCENAIVCWKPGKLEESIHNVKPPE---SATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQ-SGKVYV 333 (385)
T ss_pred H--hhheeecccCceEEEEecchhhhhhhccCCCc---cceeeeeEeccCccceEEEEEeecHHHHHHhhccC-CCcEEE
Confidence 6 5699999999999999762 221100000000 0000001111122333 44566777889999888 999999
Q ss_pred EECCCCceE--EEeeC--CCCCeEEEEEccCCCCEEEEEecCceEEEEECC
Q psy9598 749 WDAFNGDLV--QVLKG--HTNEVFVLESHPFDSRVLLSAGHDGLIIIWDIL 795 (1915)
Q Consensus 749 wD~~tg~~i--~~l~g--H~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~ 795 (1915)
||+....+. .++.. ....|...+|+. ++.+|+....||+|.-||..
T Consensus 334 wdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~-dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 334 WDLDNNEPPKCTTLTHSKSGSTVRQTSFSR-DGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred EECCCCCCccCceEEeccccceeeeeeecc-cCcEEEEEeCCCcEEEEEee
Confidence 999876552 22322 234688899998 99999999999999999864
|
|
| >KOG0322|consensus | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.8e-19 Score=191.96 Aligned_cols=301 Identities=20% Similarity=0.252 Sum_probs=217.1
Q ss_pred eEEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEe-CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEEC
Q psy9598 469 HYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLR-GCSGEISDIAIDNRNILLAAGTVDKTIRIWNL 547 (1915)
Q Consensus 469 ~~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~-gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl 547 (1915)
.+.|++|.+.|+|+.|..+++ |++|..-|.|++|++.+...+..++ .|...|+.+.--|+ ..|.+-+.|+.+.+|++
T Consensus 7 ~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~i 84 (323)
T KOG0322|consen 7 FFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTI 84 (323)
T ss_pred eeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEc
Confidence 457779999999999998875 8999999999999999999888888 66778999998887 46888889999999999
Q ss_pred CCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCC-eEEEEecccCccccceeccCcc---ccccccCCCCCceEE
Q psy9598 548 QTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDG-CIGFWKYKLDIDISKTVFHEPV---MFNERIRPGNAHILC 623 (1915)
Q Consensus 548 ~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~Dg-tI~iWDl~~~~~~~~~~~~~~~---~~~~~~~~~~~~V~~ 623 (1915)
.-+..+ ..|+-.++++.|++.. |+..+... .+-+++-+............+. .....-.+..+.+.|
T Consensus 85 a~s~~i---~i~Si~~nslgFCrfS------l~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc 155 (323)
T KOG0322|consen 85 AYSAFI---SIHSIVVNSLGFCRFS------LVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMC 155 (323)
T ss_pred cCcceE---EEeeeeccccccccce------eccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceee
Confidence 865433 3356678888888843 33333222 2222222211110000000000 000111233466777
Q ss_pred EEECCC-C--cEEEEEeCCCeEEEEEecCCC-------CCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEcc
Q psy9598 624 SSFSPG-G--LFLATGSGDHHVRVYKMDGVD-------SPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYK 693 (1915)
Q Consensus 624 l~fspd-g--~~Lasgs~Dg~I~IwDl~~~~-------~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~ 693 (1915)
..+... + -+|++|..+|.|.+||+.... ..........|..+|.++.|.+....=++|+.+..+..|.+.
T Consensus 156 ~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~ 235 (323)
T KOG0322|consen 156 QDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLN 235 (323)
T ss_pred eeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeec
Confidence 765432 2 357788999999999995431 112223345799999999999877777889999999999876
Q ss_pred CCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCCCeEEEEEc
Q psy9598 694 CSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESH 773 (1915)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~s 773 (1915)
...-. .............|..+.+-||++.+++++. ||.|+||+.++..++.+|+-|.+.|++++|+
T Consensus 236 ~s~gs------------lq~~~e~~lknpGv~gvrIRpD~KIlATAGW-D~RiRVyswrtl~pLAVLkyHsagvn~vAfs 302 (323)
T KOG0322|consen 236 HSTGS------------LQIRKEITLKNPGVSGVRIRPDGKILATAGW-DHRIRVYSWRTLNPLAVLKYHSAGVNAVAFS 302 (323)
T ss_pred cccCc------------ccccceEEecCCCccceEEccCCcEEeeccc-CCcEEEEEeccCCchhhhhhhhcceeEEEeC
Confidence 43200 0011112224456788999999999999999 9999999999999999999999999999999
Q ss_pred cCCCCEEEEEecCceEEEEEC
Q psy9598 774 PFDSRVLLSAGHDGLIIIWDI 794 (1915)
Q Consensus 774 p~dg~~LaSgs~DG~I~IWdl 794 (1915)
| +..++|+||.|++|.+|++
T Consensus 303 p-d~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 303 P-DCELMAAASKDARISLWKL 322 (323)
T ss_pred C-CCchhhhccCCceEEeeec
Confidence 9 8899999999999999987
|
|
| >cd05521 Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_like subfamily, specific to fungi | Back alignment and domain information |
|---|
Probab=99.80 E-value=8e-20 Score=181.49 Aligned_cols=96 Identities=24% Similarity=0.438 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHhcCCC------CCCCCCCCCCCCCCCccccCCCcCCHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhh
Q psy9598 118 WKNECREVLETLWVCPD------SEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRN 191 (1915)
Q Consensus 118 ~~~~~~~il~~l~~~~~------~~~F~~pvd~~~~pdY~~iIk~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~Lif~N~~~ 191 (1915)
+.++|..|++.|++..+ +.+|..+++...+||||++|++||||+||++||++ |.++++|..||.|||.||+.
T Consensus 2 l~~~~~~l~~~i~~~~~~~g~~~~~~F~~lp~~~~~pdYy~iI~~PmdL~tI~~kl~~--Y~s~~ef~~D~~li~~Na~~ 79 (106)
T cd05521 2 LSKKLKPLYDGIYTLKEENGIEIHPIFNVLPLRKDYPDYYKIIKNPLSLNTVKKRLPH--YTNAQEFVNDLAQIPWNARL 79 (106)
T ss_pred HHHHHHHHHHHHHhhcCcCCCCchHhhhcCCccccCccHHHHhcCCCCHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHH
Confidence 56789999999998665 47999999999999999999999999999999998 99999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHHHH
Q psy9598 192 YNQNKRSKIYIMTTRLSEFAEEHLR 216 (1915)
Q Consensus 192 yN~~~~s~i~~~a~~l~~~f~~~~~ 216 (1915)
||+++ |.+|.+|..|+++|.+++.
T Consensus 80 yN~~~-s~i~~~A~~le~~~~~~~~ 103 (106)
T cd05521 80 YNTKG-SVIYKYALILEKYINDVII 103 (106)
T ss_pred HcCCC-CHHHHHHHHHHHHHHHhhc
Confidence 99977 9999999999999998764
|
Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >cd05522 Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_like subfamily, specific to fungi | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.1e-19 Score=181.12 Aligned_cols=95 Identities=25% Similarity=0.384 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHhc------CCCCCCCCCCCCCCCCCCccccCCCcCCHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhh
Q psy9598 119 KNECREVLETLWV------CPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNY 192 (1915)
Q Consensus 119 ~~~~~~il~~l~~------~~~~~~F~~pvd~~~~pdY~~iIk~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~Lif~N~~~y 192 (1915)
.+++..|++.|++ ++.++||..+|+...+||||++|++||||+||++||.++.|.++++|..||+|||.||+.|
T Consensus 3 ~~~~~~i~~~v~~~~d~~g~~l~~~F~~~p~~~~~pdYy~~I~~Pmdl~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~y 82 (104)
T cd05522 3 EARIKNILKGLRKERDENGRLLTLHFEKLPDKAREPEYYQEISNPISLDDIKKKVKRRKYKSFDQFLNDLNLMFENAKLY 82 (104)
T ss_pred HHHHHHHHHHHHHHhCcCCCcccHHHhcCCCccccCcHHHHhCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHH
Confidence 4567777777776 4458999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHH
Q psy9598 193 NQNKRSKIYIMTTRLSEFAEEH 214 (1915)
Q Consensus 193 N~~~~s~i~~~a~~l~~~f~~~ 214 (1915)
|+++ |.+|.+|..|++.|+++
T Consensus 83 n~~~-s~i~~~A~~l~~~f~~l 103 (104)
T cd05522 83 NEND-SQEYKDAVLLEKEARLL 103 (104)
T ss_pred CCCC-CHHHHHHHHHHHHHHHh
Confidence 9977 99999999999999974
|
Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >smart00297 BROMO bromo domain | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.6e-19 Score=183.48 Aligned_cols=100 Identities=38% Similarity=0.616 Sum_probs=96.0
Q ss_pred hHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCccccCCCcCCHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhhcCCC
Q psy9598 117 NWKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQNK 196 (1915)
Q Consensus 117 ~~~~~~~~il~~l~~~~~~~~F~~pvd~~~~pdY~~iIk~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~Lif~N~~~yN~~~ 196 (1915)
.+...|..|++.+.+++.+++|..||+...+|+||++|++||||+||++||+++.|.|+++|..||+|||.||+.||+++
T Consensus 7 ~~~~~~~~i~~~~~~~~~~~~F~~~~~~~~~p~Y~~~i~~P~dl~~I~~kl~~~~Y~s~~ef~~D~~li~~Na~~~n~~~ 86 (107)
T smart00297 7 KLQSLLKAVLDKLDSHRLSWPFLKPVDRKEAPDYYDIIKKPMDLSTIKKKLENGKYSSVEEFVADVQLMFSNAKTYNGPD 86 (107)
T ss_pred HHHHHHHHHHHHHHhCccchhhccCCChhhccCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 56788999999999999999999999998999999999999999999999999999999999999999999999999966
Q ss_pred CCHHHHHHHHHHHHHHHHHHH
Q psy9598 197 RSKIYIMTTRLSEFAEEHLRR 217 (1915)
Q Consensus 197 ~s~i~~~a~~l~~~f~~~~~~ 217 (1915)
+.++.+|..|++.|++.|++
T Consensus 87 -s~~~~~a~~l~~~f~~~~~~ 106 (107)
T smart00297 87 -SEVYKDAKKLEKFFEKKLRE 106 (107)
T ss_pred -CHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999876
|
|
| >KOG1963|consensus | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.2e-16 Score=199.25 Aligned_cols=378 Identities=15% Similarity=0.233 Sum_probs=253.2
Q ss_pred ecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCC---CEEEEEeCCCcEEEEECC
Q psy9598 472 NLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRN---ILLAAGTVDKTIRIWNLQ 548 (1915)
Q Consensus 472 l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg---~~LaSgs~DgtIrVWDl~ 548 (1915)
|.|-...-..-.||+|+++|+....+ .|.||.+.||.++..+.+|..+++.+.+.+.. .++++++.||+|++||..
T Consensus 12 lgg~n~~~~~avfSnD~k~l~~~~~~-~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~ 90 (792)
T KOG1963|consen 12 LGGRNGNKSPAVFSNDAKFLFLCTGN-FVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWS 90 (792)
T ss_pred eccccceecccccccCCcEEEEeeCC-EEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCC
Confidence 44444444445689999999988765 99999999999999999999999999998754 477899999999999999
Q ss_pred CCceEEEeecCCCCeEEEEeccCccC----------CCcEEEEEe-----------------------------------
Q psy9598 549 TLAPISVLVGHQGIITGVNFCPLEVN----------GFNYLASTS----------------------------------- 583 (1915)
Q Consensus 549 tg~~~~~l~~h~~~V~sl~fsp~~~~----------d~~~L~sgs----------------------------------- 583 (1915)
.+..+.++..+. .|.++.+.|.... +...+.+++
T Consensus 91 ~~~Llkt~~~~~-~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~ 169 (792)
T KOG1963|consen 91 DGELLKTFDNNL-PVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDN 169 (792)
T ss_pred CcEEEEEEecCC-ceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEc
Confidence 888877765432 2222222121100 001111111
Q ss_pred ---------CCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecC-CCCC
Q psy9598 584 ---------TDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDG-VDSP 653 (1915)
Q Consensus 584 ---------~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~-~~~~ 653 (1915)
.+..+.+|...... .. .........|...++|.+++|.++++|+|..||.|.+|.--+ ....
T Consensus 170 ~~ge~~~i~~~~~~~~~~v~~~~---~~-----~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~ 241 (792)
T KOG1963|consen 170 NSGEFKGIVHMCKIHIYFVPKHT---KH-----TSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDS 241 (792)
T ss_pred CCceEEEEEEeeeEEEEEecccc---ee-----eccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccccccc
Confidence 11112222222211 00 000011123455589999999999999999999999997544 2334
Q ss_pred ceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCC
Q psy9598 654 LGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASD 733 (1915)
Q Consensus 654 ~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg 733 (1915)
.....+.-|...|.+++|+++|.+|++|+..|.+.+|.+.++.... +....+.|..+.++||+
T Consensus 242 ~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqf-----------------LPRLgs~I~~i~vS~ds 304 (792)
T KOG1963|consen 242 ETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQF-----------------LPRLGSPILHIVVSPDS 304 (792)
T ss_pred ccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCCccc-----------------ccccCCeeEEEEEcCCC
Confidence 4455678899999999999999999999999999999998876221 22356789999999999
Q ss_pred CEEEEEEecCCeEEEEECCCCceEEEeeCC-----------CCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccc
Q psy9598 734 RWVITAINFNFQIKIWDAFNGDLVQVLKGH-----------TNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGY 802 (1915)
Q Consensus 734 ~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH-----------~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~ 802 (1915)
.+.++... |+.|.+....+.....++.|- .+-.+.++++| ..+.++-.+..|+|.+||+.+... +
T Consensus 305 ~~~sl~~~-DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idp-r~~~~vln~~~g~vQ~ydl~td~~--i 380 (792)
T KOG1963|consen 305 DLYSLVLE-DNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDP-RTNSLVLNGHPGHVQFYDLYTDST--I 380 (792)
T ss_pred CeEEEEec-CceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcC-CCCceeecCCCceEEEEeccccce--e
Confidence 99999988 999999987655444433322 23356667777 555666677777777777654322 1
Q ss_pred ee---------------------------------------------------------------eeeeecCCCCcc-eE
Q psy9598 803 KW---------------------------------------------------------------FHNIVEGQGEGA-LF 818 (1915)
Q Consensus 803 ~~---------------------------------------------------------------~~~~~~~~~~~~-V~ 818 (1915)
.. +...+...|... +.
T Consensus 381 ~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~va 460 (792)
T KOG1963|consen 381 YKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVA 460 (792)
T ss_pred eeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEE
Confidence 11 111111222222 33
Q ss_pred EEEEcCCCC-EEEEEeCCCeEEEEeCCCCccccc---------------C-CCceeecCCCCeeeecCCCccceeeccc
Q psy9598 819 DGKWSPDGT-TCALTDSYGHLLVYGLGGFKRPQN---------------I-PRELFFHTDYRTLNRPNGLFEPTYDEVT 880 (1915)
Q Consensus 819 ~vafSpdg~-~Lasg~~dG~I~Iwdl~s~~~~~~---------------l-~~~~~F~~d~~~Lv~~~~~~~~v~D~~t 880 (1915)
.+.+++... .+++++.||.++||-+.+.+.+.. . ...+.|+.||..|.....+.+.+||-.+
T Consensus 461 t~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla~s~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 461 TIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLAVSFDDTITIWDYDT 539 (792)
T ss_pred EEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEEEecCCEEEEecCCC
Confidence 333344333 889999999999999954332211 1 1267899999999988888888999776
|
|
| >KOG1009|consensus | Back alignment and domain information |
|---|
Probab=99.79 E-value=8e-18 Score=192.74 Aligned_cols=312 Identities=16% Similarity=0.234 Sum_probs=217.0
Q ss_pred CCcEEEEEEcCCCC-EEEEEECCCcEEEEECCCC---------cEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEE
Q psy9598 476 LSAVFCVLFDKLGE-VIVTGADDLLIKLWRARDG---------KLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIW 545 (1915)
Q Consensus 476 ~~~V~~vafspdg~-~LaTGs~Dg~I~IWd~~tg---------~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVW 545 (1915)
..+|+++.|..++. .||||+.|..|+||-+..+ ..+..|..|...|+++.|+|+|.+||||+.+|.|.+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW 92 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence 47899999998766 9999999999999987543 2455788999999999999999999999999999999
Q ss_pred ECC--------C--------CceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccc
Q psy9598 546 NLQ--------T--------LAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVM 609 (1915)
Q Consensus 546 Dl~--------t--------g~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~ 609 (1915)
-.. + ......+.+|...|..++|+|+ +.++++++-|.++++||+..+.....
T Consensus 93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d----~~~l~s~s~dns~~l~Dv~~G~l~~~-------- 160 (434)
T KOG1009|consen 93 KQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPD----SNFLVSGSVDNSVRLWDVHAGQLLAI-------- 160 (434)
T ss_pred EecCcCCccccchhhhCccceEEEEEecccccchhhhhccCC----CceeeeeeccceEEEEEeccceeEee--------
Confidence 765 2 2335567889999999999995 49999999999999999998864333
Q ss_pred cccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCC-CCeeEEEEcCCCCEEEEEeCCCcEE
Q psy9598 610 FNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHS-DKVDSIQWSHSHLRFVSGSRDGTAL 688 (1915)
Q Consensus 610 ~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~-~~V~sl~fspdg~~L~sgs~DG~I~ 688 (1915)
+..|...+..++|.|-+.++++-+.|...+++.+..... ...|. ..+.+-++.+.......-..|.++.
T Consensus 161 ----~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~------~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlk 230 (434)
T KOG1009|consen 161 ----LDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQV------IKRHGLDIMPAKAFNEREGKSTRLFHDETLK 230 (434)
T ss_pred ----ccccccccceeecchhhhhhhhhccCcccceeeeeeeee------eeeeeeeEeeecccCCCCcceeeeeecCchh
Confidence 235678899999999999999999998777777622111 11111 1111112222211111111222211
Q ss_pred EEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEe---cCC-----eEEEEECCC-CceEEE
Q psy9598 689 IWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAIN---FNF-----QIKIWDAFN-GDLVQV 759 (1915)
Q Consensus 689 IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~---~Dg-----~I~vwD~~t-g~~i~~ 759 (1915)
.-...++|+|+|.+|++... .++ ..++|+-.. ..++..
T Consensus 231 ---------------------------------sFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~ 277 (434)
T KOG1009|consen 231 ---------------------------------SFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAAR 277 (434)
T ss_pred ---------------------------------hhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceee
Confidence 12334677788877776432 011 223343221 234555
Q ss_pred eeCCCCCeEEEEEccC-----------------CCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEE
Q psy9598 760 LKGHTNEVFVLESHPF-----------------DSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKW 822 (1915)
Q Consensus 760 l~gH~~~V~sl~~sp~-----------------dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vaf 822 (1915)
+.+...++..+.|+|. -.-.+|.++ ...|+|||..+..+ +..+. +.|-.+|++++|
T Consensus 278 lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt-~~svyvydtq~~~P--~~~v~----nihy~~iTDiaw 350 (434)
T KOG1009|consen 278 LPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIAT-KNSVYVYDTQTLEP--LAVVD----NIHYSAITDIAW 350 (434)
T ss_pred cCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEee-cceEEEeccccccc--eEEEe----eeeeeeecceee
Confidence 5555556666666541 122344454 45899999988777 54443 456789999999
Q ss_pred cCCCCEEEEEeCCCeEEEEeCCCCccc
Q psy9598 823 SPDGTTCALTDSYGHLLVYGLGGFKRP 849 (1915)
Q Consensus 823 Spdg~~Lasg~~dG~I~Iwdl~s~~~~ 849 (1915)
++||..|+..+.||.+.+..+...+..
T Consensus 351 s~dg~~l~vSS~DGyCS~vtfe~~elg 377 (434)
T KOG1009|consen 351 SDDGSVLLVSSTDGFCSLVTFEPWELG 377 (434)
T ss_pred cCCCcEEEEeccCCceEEEEEcchhcc
Confidence 999999999999999999888876654
|
|
| >KOG1445|consensus | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.6e-17 Score=194.57 Aligned_cols=193 Identities=18% Similarity=0.267 Sum_probs=137.3
Q ss_pred eCCCeEEEEEecCCCC-CceeEEeccCCCCeeEEEEcC-CCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccc
Q psy9598 637 SGDHHVRVYKMDGVDS-PLGILEVEEHSDKVDSIQWSH-SHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKET 714 (1915)
Q Consensus 637 s~Dg~I~IwDl~~~~~-~~~i~~l~~h~~~V~sl~fsp-dg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~ 714 (1915)
+..|.|-||+++.... +..+..--.....|+.++|.| |...|++++.||.|+||.+..+.... +.....
T Consensus 600 g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e---------~~~tPe 670 (1012)
T KOG1445|consen 600 GSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPE---------NEMTPE 670 (1012)
T ss_pred CCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCc---------ccCCcc
Confidence 3456677777743221 111111111345688999988 45689999999999999887654211 111223
Q ss_pred cccccccccEEEEEECCCCC-EEEEEEecCCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEE
Q psy9598 715 SDETNKKIKVTMVAWDASDR-WVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWD 793 (1915)
Q Consensus 715 ~~~~~~~~~V~~va~spdg~-~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWd 793 (1915)
.....|...|+++.|+|-.. .|++++. |.+|++||+.++.....|.||.+.|++++|+| +|+.++|.+.||+|+||+
T Consensus 671 ~~lt~h~eKI~slRfHPLAadvLa~asy-d~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSp-dGr~~AtVcKDg~~rVy~ 748 (1012)
T KOG1445|consen 671 KILTIHGEKITSLRFHPLAADVLAVASY-DSTIELWDLANAKLYSRLVGHTDQIFGIAWSP-DGRRIATVCKDGTLRVYE 748 (1012)
T ss_pred eeeecccceEEEEEecchhhhHhhhhhc-cceeeeeehhhhhhhheeccCcCceeEEEECC-CCcceeeeecCceEEEeC
Confidence 44667889999999999654 4555665 99999999999999999999999999999999 999999999999999999
Q ss_pred CCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEEeCC----CeEEEEeCCC
Q psy9598 794 ILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSY----GHLLVYGLGG 845 (1915)
Q Consensus 794 l~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~d----G~I~Iwdl~s 845 (1915)
-.++... +..-. +...+.-..+.|.-||++|++.+.| .+|.+|+...
T Consensus 749 Prs~e~p-v~Eg~----gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~ 799 (1012)
T KOG1445|consen 749 PRSREQP-VYEGK----GPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQT 799 (1012)
T ss_pred CCCCCCc-cccCC----CCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhh
Confidence 9877651 11100 0011223456788899999988765 4588888664
|
|
| >cd05521 Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_like subfamily, specific to fungi | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.5e-19 Score=179.51 Aligned_cols=96 Identities=24% Similarity=0.438 Sum_probs=90.1
Q ss_pred hHHHHHHHHHHHHcCCC------CCCCCCCCCCCCCCCccccccCccchhhHHhhhcCCCCCCHHHHHHHHHHHHHHhhh
Q psy9598 1533 WKNECREVLETLWVCPD------SEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRN 1606 (1915)
Q Consensus 1533 ~~~~~~~ll~~l~~~~~------s~~F~~pv~~~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~Dv~lif~Na~~ 1606 (1915)
+.++|..|++.|++.++ +.+|..+|++.++||||++|++||||+||++||++ |.|+++|..||.|||+||+.
T Consensus 2 l~~~~~~l~~~i~~~~~~~g~~~~~~F~~lp~~~~~pdYy~iI~~PmdL~tI~~kl~~--Y~s~~ef~~D~~li~~Na~~ 79 (106)
T cd05521 2 LSKKLKPLYDGIYTLKEENGIEIHPIFNVLPLRKDYPDYYKIIKNPLSLNTVKKRLPH--YTNAQEFVNDLAQIPWNARL 79 (106)
T ss_pred HHHHHHHHHHHHHhhcCcCCCCchHhhhcCCccccCccHHHHhcCCCCHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHH
Confidence 56789999999998766 46999999999999999999999999999999998 99999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHHHH
Q psy9598 1607 YNQNKRSKIYIMTTRLSEFAEEHLR 1631 (1915)
Q Consensus 1607 yN~~~~s~i~~~a~~l~~~f~~~~~ 1631 (1915)
||+++ |.+|.+|..|+++|.+++.
T Consensus 80 yN~~~-s~i~~~A~~le~~~~~~~~ 103 (106)
T cd05521 80 YNTKG-SVIYKYALILEKYINDVII 103 (106)
T ss_pred HcCCC-CHHHHHHHHHHHHHHHhhc
Confidence 99988 9999999999999998764
|
Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >KOG0302|consensus | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.7e-18 Score=194.27 Aligned_cols=268 Identities=19% Similarity=0.279 Sum_probs=193.5
Q ss_pred eecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccc-ee--c-cCccccccccCCCCCceEEEEECCCC-
Q psy9598 556 LVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISK-TV--F-HEPVMFNERIRPGNAHILCSSFSPGG- 630 (1915)
Q Consensus 556 l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~-~~--~-~~~~~~~~~~~~~~~~V~~l~fspdg- 630 (1915)
..+|.+.|+-+...+.+ +..+.++-+..|.|.||++........ .. . .........+.+|...-+.++|||-.
T Consensus 147 ~i~h~g~~NRvr~~~~~--~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~ 224 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLG--NEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKT 224 (440)
T ss_pred ccccccccceeeecccC--CcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccc
Confidence 34677888888777754 456788888999999999865321100 00 0 01111223455677888999999932
Q ss_pred cEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCC-CEEEEEeCCCcEEEEEccCCceEEeeecccccCC
Q psy9598 631 LFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSH-LRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLP 709 (1915)
Q Consensus 631 ~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg-~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~ 709 (1915)
..|++|.--+.|++|....+.-..-...+.+|+..|-.|+|||.. ..|+|||.||+|+|||++.+....
T Consensus 225 g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~---------- 294 (440)
T KOG0302|consen 225 GRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKA---------- 294 (440)
T ss_pred cccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccc----------
Confidence 248888888899999986533222333467899999999999975 489999999999999999874211
Q ss_pred CCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCC---CceEEEeeCCCCCeEEEEEccCCCCEEEEEecC
Q psy9598 710 HTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFN---GDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHD 786 (1915)
Q Consensus 710 ~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~t---g~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~D 786 (1915)
......|...|+.|.|+..-.+|++|+. ||+++|||+++ ++++..|+-|..+|++|.|+|.+...|+++|.|
T Consensus 295 ----~~~~kAh~sDVNVISWnr~~~lLasG~D-dGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D 369 (440)
T KOG0302|consen 295 ----AVSTKAHNSDVNVISWNRREPLLASGGD-DGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGED 369 (440)
T ss_pred ----eeEeeccCCceeeEEccCCcceeeecCC-CceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCC
Confidence 1122558889999999999888888888 99999999875 678999999999999999999888999999999
Q ss_pred ceEEEEECCCCcc---------ccceeeee--eecCCCCcceEEEEEcCC-CCEEEEEeCCCeEEE
Q psy9598 787 GLIIIWDILSSKQ---------RGYKWFHN--IVEGQGEGALFDGKWSPD-GTTCALTDSYGHLLV 840 (1915)
Q Consensus 787 G~I~IWdl~s~~~---------~~~~~~~~--~~~~~~~~~V~~vafSpd-g~~Lasg~~dG~I~I 840 (1915)
..|.|||+....- .++..+.. ++..++...|..+.|++. ..+|++++.||.-.+
T Consensus 370 ~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGfnVf 435 (440)
T KOG0302|consen 370 NQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGFNVF 435 (440)
T ss_pred CcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccceeEE
Confidence 9999999964221 01111111 111234567888999985 457777777775433
|
|
| >KOG0307|consensus | Back alignment and domain information |
|---|
Probab=99.79 E-value=7.7e-19 Score=223.62 Aligned_cols=296 Identities=21% Similarity=0.357 Sum_probs=217.8
Q ss_pred EEEEeCCCC-EEEEE----------eCCCcEEEEECCC--C----ceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCC
Q psy9598 523 DIAIDNRNI-LLAAG----------TVDKTIRIWNLQT--L----APISVLVGHQGIITGVNFCPLEVNGFNYLASTSTD 585 (1915)
Q Consensus 523 ~Lafspdg~-~LaSg----------s~DgtIrVWDl~t--g----~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~D 585 (1915)
.++|+|.+. +||+| +.+.++-||.+.- . +++..+. .....+.++|++.+.+...+|+.|..|
T Consensus 11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG~ed 89 (1049)
T KOG0307|consen 11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGGLED 89 (1049)
T ss_pred eEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccccc-ccccceeeeecccCCCccceeeccccC
Confidence 467888775 45554 2345566665532 2 2333332 234678999999764444579999999
Q ss_pred CeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCc-EEEEEeCCCeEEEEEecCCCCCceeEEeccCCC
Q psy9598 586 GCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGL-FLATGSGDHHVRVYKMDGVDSPLGILEVEEHSD 664 (1915)
Q Consensus 586 gtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~-~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~ 664 (1915)
|.|.+||...- ..............|.+.|..+.|++... +||+|+.||.|.|||+.....+.... -....+
T Consensus 90 G~I~ly~p~~~------~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~-~~~~~~ 162 (1049)
T KOG0307|consen 90 GNIVLYDPASI------IANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPG-SQAPPS 162 (1049)
T ss_pred CceEEecchhh------ccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCC-CCCCcc
Confidence 99999997652 01112223345567889999999999654 99999999999999997654443332 223567
Q ss_pred CeeEEEEcCCC-CEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCC-EEEEEEec
Q psy9598 665 KVDSIQWSHSH-LRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDR-WVITAINF 742 (1915)
Q Consensus 665 ~V~sl~fspdg-~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~-~L~t~s~~ 742 (1915)
.|.+|+|+..- ..|++++.+|.+.|||++..+.+.. .........+..++|+|++. .|++++..
T Consensus 163 eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~--------------ls~~~~~~~~S~l~WhP~~aTql~~As~d 228 (1049)
T KOG0307|consen 163 EIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIK--------------LSDTPGRMHCSVLAWHPDHATQLLVASGD 228 (1049)
T ss_pred cceEeccchhhhHHhhccCCCCCceeccccCCCcccc--------------cccCCCccceeeeeeCCCCceeeeeecCC
Confidence 89999998654 4688999999999999997753221 11222335688999999874 45555542
Q ss_pred CC--eEEEEECCC-CceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEE
Q psy9598 743 NF--QIKIWDAFN-GDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFD 819 (1915)
Q Consensus 743 Dg--~I~vwD~~t-g~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~ 819 (1915)
|+ .|.+||++. ...++++.+|...|.+|.|++.|..+|+|+|.|+.|.+|+..+++. +..+. .....++.
T Consensus 229 d~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEv--l~~~p-----~~~nW~fd 301 (1049)
T KOG0307|consen 229 DSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEV--LGELP-----AQGNWCFD 301 (1049)
T ss_pred CCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceE--eeecC-----CCCcceee
Confidence 33 699999875 4678888999999999999998889999999999999999999988 66554 34578999
Q ss_pred EEEcCC-CCEEEEEeCCCeEEEEeCCCCc
Q psy9598 820 GKWSPD-GTTCALTDSYGHLLVYGLGGFK 847 (1915)
Q Consensus 820 vafSpd-g~~Lasg~~dG~I~Iwdl~s~~ 847 (1915)
+.|+|. -..|++++-+|.|.||.+.+..
T Consensus 302 v~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 302 VQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred eeecCCCcchhhhheeccceeeeeeecCC
Confidence 999995 4589999999999999998654
|
|
| >KOG0270|consensus | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.4e-17 Score=192.73 Aligned_cols=301 Identities=19% Similarity=0.224 Sum_probs=210.2
Q ss_pred EEEEEeCCCCEEEEEeCC---Cc--EEEEECCCCceEEEeecCC----CCeEEEEeccC---ccCCCcEEEEEeCCCeEE
Q psy9598 522 SDIAIDNRNILLAAGTVD---KT--IRIWNLQTLAPISVLVGHQ----GIITGVNFCPL---EVNGFNYLASTSTDGCIG 589 (1915)
Q Consensus 522 ~~Lafspdg~~LaSgs~D---gt--IrVWDl~tg~~~~~l~~h~----~~V~sl~fsp~---~~~d~~~L~sgs~DgtI~ 589 (1915)
-.+.+-|..++|++|-.. .. |+||+-. ..- .+..|. ....|+.|... ..+.++++|.|+.|..|.
T Consensus 129 de~~V~psDnlIl~ar~eddvs~LEvYVyn~~--e~n-lYvHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~Ie 205 (463)
T KOG0270|consen 129 DEEQVKPSDNLILCARNEDDVSYLEVYVYNEE--EEN-LYVHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIE 205 (463)
T ss_pred ccceeccCCcEEEEeeccCCceEEEEEEEcCC--Ccc-eeEecceeccCcchhhhhhhcCCCCCCCcceEEEeccCceeE
Confidence 345566766666666432 23 4444432 211 111122 23357777654 223578999999999999
Q ss_pred EEecccCccccc-eeccC--------ccccccccCCCCCceEEEEECCC-CcEEEEEeCCCeEEEEEecCCCCCceeEEe
Q psy9598 590 FWKYKLDIDISK-TVFHE--------PVMFNERIRPGNAHILCSSFSPG-GLFLATGSGDHHVRVYKMDGVDSPLGILEV 659 (1915)
Q Consensus 590 iWDl~~~~~~~~-~~~~~--------~~~~~~~~~~~~~~V~~l~fspd-g~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l 659 (1915)
|||+.-...+.. +.+.. .........+|+..|..++|+.. .+.||+||.|.+|++||+. ...+...+
T Consensus 206 IWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~---~g~p~~s~ 282 (463)
T KOG0270|consen 206 IWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVD---TGKPKSSI 282 (463)
T ss_pred EeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcC---CCCcceeh
Confidence 999864332211 11110 00011112357777888888875 4579999999999999994 44556667
Q ss_pred ccCCCCeeEEEEcCC-CCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEE
Q psy9598 660 EEHSDKVDSIQWSHS-HLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVIT 738 (1915)
Q Consensus 660 ~~h~~~V~sl~fspd-g~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t 738 (1915)
..|...|.++.|+|. ...|++||.||+|.+.|.+..... ...-...+.|-.++|.+.....+.
T Consensus 283 ~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s----------------~~~wk~~g~VEkv~w~~~se~~f~ 346 (463)
T KOG0270|consen 283 THHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNS----------------GKEWKFDGEVEKVAWDPHSENSFF 346 (463)
T ss_pred hhcCCceeEEEecCCCceEEEeccccceEEeeeccCcccc----------------CceEEeccceEEEEecCCCceeEE
Confidence 789999999999986 568999999999999998842210 111124567889999999887777
Q ss_pred EEecCCeEEEEECCC-CceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcce
Q psy9598 739 AINFNFQIKIWDAFN-GDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGAL 817 (1915)
Q Consensus 739 ~s~~Dg~I~vwD~~t-g~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V 817 (1915)
++..||+|+-+|++. ++++.++++|.++|.+|++++....+|+|+|.|+.|++|++.......+.. + .-..+..
T Consensus 347 ~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~-~----~~~~~rl 421 (463)
T KOG0270|consen 347 VSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKE-H----SFKLGRL 421 (463)
T ss_pred EecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCccccc-c----cccccce
Confidence 776699999999987 599999999999999999999888999999999999999997665511111 0 0112346
Q ss_pred EEEEEcCCC-CEEEEEeCCCeEEEEeCCCCccc
Q psy9598 818 FDGKWSPDG-TTCALTDSYGHLLVYGLGGFKRP 849 (1915)
Q Consensus 818 ~~vafSpdg-~~Lasg~~dG~I~Iwdl~s~~~~ 849 (1915)
.|.++.|+- -+||+|+..+.++|||+.+...+
T Consensus 422 ~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 422 HCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred eecccCCCcceEEEecCccceEEEeecccChhH
Confidence 677777764 46788888889999999887554
|
|
| >PF06507 Auxin_resp: Auxin response factor; InterPro: IPR010525 This pattern represents a conserved region of auxin-responsive transcription factors | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.1e-19 Score=167.09 Aligned_cols=69 Identities=26% Similarity=0.404 Sum_probs=65.3
Q ss_pred CcCCcEEEEEeCCCCCCCcEEEehHhHHHHHcCCCCCCCeEEEEEcCe-----eEEEEEeecCC-----CCCCCceeeE
Q psy9598 1247 KLTNEFFNIKYHDMPDVIDFFVLRQIYETAIAREWNVGDRFCSMIDDA-----WWWGTIEGKPS-----PTKSPFLGYK 1315 (1915)
Q Consensus 1247 ~~~~~~f~v~y~~~~~~~~f~v~~~~y~~~~~~~~~~g~rf~~~~~~~-----~~~G~i~~~~~-----~~~s~w~~~~ 1315 (1915)
..+|..|+|+|+|+.+.+||||++++|++|++++|++||||+|.||++ +|+|||+|+++ ||+|+||||+
T Consensus 5 a~~~~~F~V~Y~PRa~~sEFVV~~~k~~~al~~~~~~GmRfkM~fE~eds~~~~~~GtI~~v~~~dp~~w~~S~WR~Lq 83 (83)
T PF06507_consen 5 AATGSPFEVFYYPRASPSEFVVPASKYDKALNHPWSVGMRFKMRFETEDSSERRWQGTIVGVSDLDPIRWPGSKWRMLQ 83 (83)
T ss_pred hhcCCeEEEEECCCCCCcceEEEHHHHHHHhcCCCCCCcEEEEEeccCCCccceeeeEEeEeeccCCCCCCCCCcccCc
Confidence 457889999999999999999999999999999999999999999875 88999999988 9999999995
|
The plant hormone auxin (indole-3-acetic acid) can regulate the gene expression of several families, including Aux/IAA, GH3 and SAUR families. Two related families of proteins, Aux/IAA proteins (IPR003311 from INTERPRO) and the auxin response factors (ARF), are key regulators of auxin-modulated gene expression []. There are multiple ARF proteins, some of which activate, while others repress transcription. ARF proteins bind to auxin-responsive cis-acting promoter elements (AuxREs) using an N-terminal DNA-binding domain. It is thought that Aux/IAA proteins activate transcription by modifying ARF activity through the C-terminal protein-protein interaction domains (IPR011525 from INTERPRO) found in both Aux/IAA and ARF proteins. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0009725 response to hormone stimulus, 0005634 nucleus |
| >KOG4378|consensus | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.5e-17 Score=192.87 Aligned_cols=284 Identities=14% Similarity=0.162 Sum_probs=207.0
Q ss_pred cEEEEECCCCcEEEEEeCCCC--CEEEEEEeCCCCE-EEEEeCCCcEEEEECCCC--ce--EEEeecCCCCeEEEEeccC
Q psy9598 499 LIKLWRARDGKLLATLRGCSG--EISDIAIDNRNIL-LAAGTVDKTIRIWNLQTL--AP--ISVLVGHQGIITGVNFCPL 571 (1915)
Q Consensus 499 ~I~IWd~~tg~~~~~l~gH~~--~I~~Lafspdg~~-LaSgs~DgtIrVWDl~tg--~~--~~~l~~h~~~V~sl~fsp~ 571 (1915)
.|+|||+......-.+..|+. .|.+++|+..+.+ +++.+.|..|++|.-... .. +..+.+. .-+||+....
T Consensus 13 ~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd--~~~Cv~~~s~ 90 (673)
T KOG4378|consen 13 KTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGD--NAFCVACASQ 90 (673)
T ss_pred ceEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccc--hHHHHhhhhc
Confidence 799999987665555544432 4899999887742 334456889999975432 11 2222222 2334443332
Q ss_pred ccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCC
Q psy9598 572 EVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVD 651 (1915)
Q Consensus 572 ~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~ 651 (1915)
..++++|+..++|+|||++...+ ...+..|...|+|+.++....+||+++..|.|.|..+.+
T Consensus 91 ----S~y~~sgG~~~~Vkiwdl~~kl~------------hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t-- 152 (673)
T KOG4378|consen 91 ----SLYEISGGQSGCVKIWDLRAKLI------------HRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKT-- 152 (673)
T ss_pred ----ceeeeccCcCceeeehhhHHHHH------------hhhccCCcceeEEEEecCCcceeEEeccCCcEEEEeccc--
Confidence 27999999999999999985432 223456789999999999999999999999999999843
Q ss_pred CCceeEEeccC-CCCeeEEEEcCCCC-EEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEE
Q psy9598 652 SPLGILEVEEH-SDKVDSIQWSHSHL-RFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAW 729 (1915)
Q Consensus 652 ~~~~i~~l~~h-~~~V~sl~fspdg~-~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~ 729 (1915)
......+.-. ...|.-+.|++..+ +|.+++.+|.|.+||+...... ......|..+...|||
T Consensus 153 -~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~---------------~~~~~~HsAP~~gicf 216 (673)
T KOG4378|consen 153 -KQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPI---------------FHASEAHSAPCRGICF 216 (673)
T ss_pred -CccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcc---------------cchhhhccCCcCccee
Confidence 2333333333 34566889999876 5667899999999999865522 2234457888899999
Q ss_pred CCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeee
Q psy9598 730 DASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIV 809 (1915)
Q Consensus 730 spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~ 809 (1915)
+|....|+++.+.|..|.+||+........+. -..+..+|+|++ +|.+|+.|...|.|..||++..+. .+....
T Consensus 217 spsne~l~vsVG~Dkki~~yD~~s~~s~~~l~-y~~Plstvaf~~-~G~~L~aG~s~G~~i~YD~R~~k~-Pv~v~s--- 290 (673)
T KOG4378|consen 217 SPSNEALLVSVGYDKKINIYDIRSQASTDRLT-YSHPLSTVAFSE-CGTYLCAGNSKGELIAYDMRSTKA-PVAVRS--- 290 (673)
T ss_pred cCCccceEEEecccceEEEeecccccccceee-ecCCcceeeecC-CceEEEeecCCceEEEEecccCCC-CceEee---
Confidence 99988877777679999999998777666664 345689999999 999999999999999999987654 144333
Q ss_pred cCCCCcceEEEEEcCCC
Q psy9598 810 EGQGEGALFDGKWSPDG 826 (1915)
Q Consensus 810 ~~~~~~~V~~vafSpdg 826 (1915)
.|...|++++|-|..
T Consensus 291 --ah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 291 --AHDASVTRVAFQPSP 305 (673)
T ss_pred --ecccceeEEEeeecc
Confidence 566789999998765
|
|
| >KOG0307|consensus | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.7e-18 Score=220.60 Aligned_cols=286 Identities=18% Similarity=0.346 Sum_probs=214.5
Q ss_pred EEEEcCCCC-EEEEEE----------CCCcEEEEECC--CC----cEEEEEeCCCCCEEEEEEeCCCCE----EEEEeCC
Q psy9598 481 CVLFDKLGE-VIVTGA----------DDLLIKLWRAR--DG----KLLATLRGCSGEISDIAIDNRNIL----LAAGTVD 539 (1915)
Q Consensus 481 ~vafspdg~-~LaTGs----------~Dg~I~IWd~~--tg----~~~~~l~gH~~~I~~Lafspdg~~----LaSgs~D 539 (1915)
.++|+|.+. +||+|. .+.++-||.+. +. +++..+. .....+.|+|.+.|.. ||.|..|
T Consensus 11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG~ed 89 (1049)
T KOG0307|consen 11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGGLED 89 (1049)
T ss_pred eEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccccc-ccccceeeeecccCCCccceeeccccC
Confidence 467888776 555553 34456666543 22 2333332 2446789999987665 8889999
Q ss_pred CcEEEEECCCC------ceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccc
Q psy9598 540 KTIRIWNLQTL------APISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNER 613 (1915)
Q Consensus 540 gtIrVWDl~tg------~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~ 613 (1915)
|.|.+||.... ..+.+...|.+.|..+.|++.. +++|++|+.||.|.|||+..........
T Consensus 90 G~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q---~nlLASGa~~geI~iWDlnn~~tP~~~~---------- 156 (1049)
T KOG0307|consen 90 GNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQ---GNLLASGADDGEILIWDLNKPETPFTPG---------- 156 (1049)
T ss_pred CceEEecchhhccCcchHHHhhhcccCCceeeeeccccC---CceeeccCCCCcEEEeccCCcCCCCCCC----------
Confidence 99999998652 2456677899999999999964 5799999999999999998753221111
Q ss_pred cCCCCCceEEEEECCC-CcEEEEEeCCCeEEEEEecCCCCCceeEEeccCC--CCeeEEEEcCCCC-EEEEEeCCC---c
Q psy9598 614 IRPGNAHILCSSFSPG-GLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHS--DKVDSIQWSHSHL-RFVSGSRDG---T 686 (1915)
Q Consensus 614 ~~~~~~~V~~l~fspd-g~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~--~~V~sl~fspdg~-~L~sgs~DG---~ 686 (1915)
.......|.|++|+.. ...|++|+.+|.+.|||++.. ..+..+..|. ..+..|+|+|++. .|++++.|. .
T Consensus 157 ~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~---~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~Pv 233 (1049)
T KOG0307|consen 157 SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKK---KPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPV 233 (1049)
T ss_pred CCCCcccceEeccchhhhHHhhccCCCCCceeccccCC---CcccccccCCCccceeeeeeCCCCceeeeeecCCCCCce
Confidence 1123478999999985 456888999999999999654 2333343333 4588999999875 566666553 5
Q ss_pred EEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCC-CEEEEEEecCCeEEEEECCCCceEEEeeCCCC
Q psy9598 687 ALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASD-RWVITAINFNFQIKIWDAFNGDLVQVLKGHTN 765 (1915)
Q Consensus 687 I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg-~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~ 765 (1915)
|.+||++... .......+|...|.++.|++.+ .+|++++. |+.|.+|+..+|+.+..+....+
T Consensus 234 iqlWDlR~as---------------sP~k~~~~H~~GilslsWc~~D~~lllSsgk-D~~ii~wN~~tgEvl~~~p~~~n 297 (1049)
T KOG0307|consen 234 IQLWDLRFAS---------------SPLKILEGHQRGILSLSWCPQDPRLLLSSGK-DNRIICWNPNTGEVLGELPAQGN 297 (1049)
T ss_pred eEeecccccC---------------CchhhhcccccceeeeccCCCCchhhhcccC-CCCeeEecCCCceEeeecCCCCc
Confidence 9999987543 1122345789999999999988 55666665 99999999999999999999889
Q ss_pred CeEEEEEccCCCCEEEEEecCceEEEEECCCCcc
Q psy9598 766 EVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQ 799 (1915)
Q Consensus 766 ~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~ 799 (1915)
+++.+.|+|.+..+|++++-||.|-|+.+.++..
T Consensus 298 W~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~~ 331 (1049)
T KOG0307|consen 298 WCFDVQWCPRNPSVMAAASFDGKISIYSLQGTDT 331 (1049)
T ss_pred ceeeeeecCCCcchhhhheeccceeeeeeecCCc
Confidence 9999999998888999999999999999987653
|
|
| >KOG4378|consensus | Back alignment and domain information |
|---|
Probab=99.78 E-value=9.8e-18 Score=194.35 Aligned_cols=270 Identities=17% Similarity=0.209 Sum_probs=201.6
Q ss_pred CcEEEEECCCCceEEEeecCC--CCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCC
Q psy9598 540 KTIRIWNLQTLAPISVLVGHQ--GIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPG 617 (1915)
Q Consensus 540 gtIrVWDl~tg~~~~~l~~h~--~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~ 617 (1915)
..++|||+........+..|+ ..|.+++|.... .-.+++.+.|..|++|.-..... ... ..... .+
T Consensus 12 d~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n---~lvvas~~gdk~~~~~~K~g~~~--~Vp------~~~k~-~g 79 (673)
T KOG4378|consen 12 DKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRN---FLVVASMAGDKVMRIKEKDGKTP--EVP------RVRKL-TG 79 (673)
T ss_pred CceEEeecccccCccccccCCCCCcceeeeccccc---eEEEeecCCceeEEEecccCCCC--ccc------eeecc-cc
Confidence 469999998665555444443 248899998631 12333445678899996543311 110 01111 11
Q ss_pred CCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCce
Q psy9598 618 NAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQW 697 (1915)
Q Consensus 618 ~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~ 697 (1915)
..-.|++......++++||..++|+|||+. ...+...+.+|...|++|.+.-...+|++++..|.|.|..+.+++.
T Consensus 80 -d~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~---~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~ 155 (673)
T KOG4378|consen 80 -DNAFCVACASQSLYEISGGQSGCVKIWDLR---AKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQK 155 (673)
T ss_pred -chHHHHhhhhcceeeeccCcCceeeehhhH---HHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCcc
Confidence 234455555556899999999999999994 4456667899999999999999999999999999999998887762
Q ss_pred EEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEe-eCCCCCeEEEEEccCC
Q psy9598 698 RFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVL-KGHTNEVFVLESHPFD 776 (1915)
Q Consensus 698 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l-~gH~~~V~sl~~sp~d 776 (1915)
... ...+....|.-+.|++..++++...+.+|.|.+||+....++..+ ..|..+...|||+|.+
T Consensus 156 tt~---------------f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsn 220 (673)
T KOG4378|consen 156 TTT---------------FTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSN 220 (673)
T ss_pred ccc---------------eecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCc
Confidence 110 111234456789999999988877666999999999877776655 5899999999999988
Q ss_pred CCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcc
Q psy9598 777 SRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGGFKR 848 (1915)
Q Consensus 777 g~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl~s~~~ 848 (1915)
..+|++.|.|..|.+||+.+... ...+. ...+...++|+++|.+|++|...|.|..||+...+.
T Consensus 221 e~l~vsVG~Dkki~~yD~~s~~s--~~~l~------y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~ 284 (673)
T KOG4378|consen 221 EALLVSVGYDKKINIYDIRSQAS--TDRLT------YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKA 284 (673)
T ss_pred cceEEEecccceEEEeecccccc--cceee------ecCCcceeeecCCceEEEeecCCceEEEEecccCCC
Confidence 88999999999999999987665 33332 235789999999999999999999999999987543
|
|
| >KOG1963|consensus | Back alignment and domain information |
|---|
Probab=99.78 E-value=4e-16 Score=194.72 Aligned_cols=376 Identities=16% Similarity=0.186 Sum_probs=260.5
Q ss_pred ccccccCCCeEEEecccCCceeeeEEecCCCCcEEEEEEcCCC---CEEEEEECCCcEEEEECCCCcEEEEEe-------
Q psy9598 446 REYSGPLSRSLMISSHKYSNLRQHYVNLGHLSAVFCVLFDKLG---EVIVTGADDLLIKLWRARDGKLLATLR------- 515 (1915)
Q Consensus 446 r~~tg~~d~~~~i~~~~~~~~~~~~~l~gH~~~V~~vafspdg---~~LaTGs~Dg~I~IWd~~tg~~~~~l~------- 515 (1915)
+.+-++....+.+.. ..+..+++.|.+|..+++.+.+.|.. .++++++.||.|++||...+.++.++.
T Consensus 29 k~l~~~~~~~V~VyS--~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~ 106 (792)
T KOG1963|consen 29 KFLFLCTGNFVKVYS--TATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHA 106 (792)
T ss_pred cEEEEeeCCEEEEEe--cchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeE
Confidence 333344444444432 22334455889999999999998754 578899999999999966543322110
Q ss_pred --------------------------------------------------------------------------------
Q psy9598 516 -------------------------------------------------------------------------------- 515 (1915)
Q Consensus 516 -------------------------------------------------------------------------------- 515 (1915)
T Consensus 107 ~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~~~~~~~~ 186 (792)
T KOG1963|consen 107 LVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVHMCKIHIY 186 (792)
T ss_pred EEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEEeeeEEEE
Confidence
Q ss_pred ----------------CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCC--C--ceEEEeecCCCCeEEEEeccCccCC
Q psy9598 516 ----------------GCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQT--L--APISVLVGHQGIITGVNFCPLEVNG 575 (1915)
Q Consensus 516 ----------------gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~t--g--~~~~~l~~h~~~V~sl~fsp~~~~d 575 (1915)
.|.-.++|.+++|+++++|+|..||.|.||.--. + .....+.-|...|++++|++ +
T Consensus 187 ~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~----~ 262 (792)
T KOG1963|consen 187 FVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSS----D 262 (792)
T ss_pred EecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEec----C
Confidence 1333578899999999999999999999996432 1 23456677999999999999 4
Q ss_pred CcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCce
Q psy9598 576 FNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLG 655 (1915)
Q Consensus 576 ~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~ 655 (1915)
|.+|++|+..|.+.+|.+.++...... .-.+.|..+.+|||+.+.+....|..|.+...........
T Consensus 263 G~~LlSGG~E~VLv~Wq~~T~~kqfLP-------------RLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~t 329 (792)
T KOG1963|consen 263 GAYLLSGGREGVLVLWQLETGKKQFLP-------------RLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKST 329 (792)
T ss_pred CceEeecccceEEEEEeecCCCccccc-------------ccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhh
Confidence 599999999999999999988521111 1237899999999999999999999999998743332222
Q ss_pred eEEecc--------CCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEE
Q psy9598 656 ILEVEE--------HSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMV 727 (1915)
Q Consensus 656 i~~l~~--------h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v 727 (1915)
+..+.. ..+-.+.++++|.-+.++-.+..|.|.+||+.+...+....-.... .......+...++.+
T Consensus 330 Isgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n-----~~~~~~n~~v~itav 404 (792)
T KOG1963|consen 330 ISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDEN-----YSDGDVNIQVGITAV 404 (792)
T ss_pred ccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeec-----ccCCcceeEEeeeee
Confidence 222211 2455778889997778888999999999999887755322111110 111112455678889
Q ss_pred EECCCCCEEEEEEe-------cC--CeEEEEECCCCc----eEEEe-eCCCCCeEEEEEccCCCC-EEEEEecCceEEEE
Q psy9598 728 AWDASDRWVITAIN-------FN--FQIKIWDAFNGD----LVQVL-KGHTNEVFVLESHPFDSR-VLLSAGHDGLIIIW 792 (1915)
Q Consensus 728 a~spdg~~L~t~s~-------~D--g~I~vwD~~tg~----~i~~l-~gH~~~V~sl~~sp~dg~-~LaSgs~DG~I~IW 792 (1915)
+.+..|.++++.-. .| ..+++|-..... +...+ ..|...+.+.++.+.... .++|+|.||.++||
T Consensus 405 ~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW 484 (792)
T KOG1963|consen 405 ARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIW 484 (792)
T ss_pred hhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEE
Confidence 99999999888642 13 357888765432 22222 378777666666553433 89999999999999
Q ss_pred ECCCCcc---ccceeeeeeecCCCCcceEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q psy9598 793 DILSSKQ---RGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGGF 846 (1915)
Q Consensus 793 dl~s~~~---~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl~s~ 846 (1915)
-+...+. ....+....+...+..++.+++|+.||..||++.. +.|.|||..+.
T Consensus 485 ~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla~s~~-~~Itiwd~~~~ 540 (792)
T KOG1963|consen 485 VFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLAVSFD-DTITIWDYDTK 540 (792)
T ss_pred EEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEEEecC-CEEEEecCCCh
Confidence 9844322 11122222333456788999999999977776655 79999999983
|
|
| >KOG0650|consensus | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.9e-17 Score=196.26 Aligned_cols=279 Identities=20% Similarity=0.265 Sum_probs=207.7
Q ss_pred EEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEE
Q psy9598 510 LLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIG 589 (1915)
Q Consensus 510 ~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~ 589 (1915)
+...+.||++.|.||...|.|.+||+|+.||+|+||.+.||.|+.++. ..+.|.||+|+|.. +...|+++-. ..+.
T Consensus 392 ~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~--~~~vLAvA~~-~~~~ 467 (733)
T KOG0650|consen 392 CALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLS--DLCVLAVAVG-ECVL 467 (733)
T ss_pred eeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCC--CceeEEEEec-CceE
Confidence 344678999999999999999999999999999999999999999886 45689999999965 3444444444 4466
Q ss_pred EEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEE----eCCCeEEEEEecCCCC-CceeEEeccCCC
Q psy9598 590 FWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATG----SGDHHVRVYKMDGVDS-PLGILEVEEHSD 664 (1915)
Q Consensus 590 iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasg----s~Dg~I~IwDl~~~~~-~~~i~~l~~h~~ 664 (1915)
|.+..-|..+.... ....|+++ ..++.+..|.-..... ...+...-.|..
T Consensus 468 ivnp~~G~~~e~~~-------------------------t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k 522 (733)
T KOG0650|consen 468 IVNPIFGDRLEVGP-------------------------TKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPK 522 (733)
T ss_pred EeCccccchhhhcc-------------------------hhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCC
Confidence 65544332111100 00111111 2345677786531111 112344456899
Q ss_pred CeeEEEEcCCCCEEEEEeCCC---cEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEe
Q psy9598 665 KVDSIQWSHSHLRFVSGSRDG---TALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAIN 741 (1915)
Q Consensus 665 ~V~sl~fspdg~~L~sgs~DG---~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~ 741 (1915)
.|..|.|+..|.+|++...++ .|.|.++..... ...+....+.|.++.|+|...+|++++.
T Consensus 523 ~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~s----------------Q~PF~kskG~vq~v~FHPs~p~lfVaTq 586 (733)
T KOG0650|consen 523 SIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKS----------------QSPFRKSKGLVQRVKFHPSKPYLFVATQ 586 (733)
T ss_pred ccceeeeecCCceEEEeccCCCcceEEEEecccccc----------------cCchhhcCCceeEEEecCCCceEEEEec
Confidence 999999999999999887653 577777664431 1122335678999999999999999885
Q ss_pred cCCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEE
Q psy9598 742 FNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGK 821 (1915)
Q Consensus 742 ~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~va 821 (1915)
..|+|||+..+.++..+......|.++++|| .|.-|+.|+.|+.++.+|+.-+... .+.+. .|..+|.+|+
T Consensus 587 --~~vRiYdL~kqelvKkL~tg~kwiS~msihp-~GDnli~gs~d~k~~WfDldlsskP-yk~lr-----~H~~avr~Va 657 (733)
T KOG0650|consen 587 --RSVRIYDLSKQELVKKLLTGSKWISSMSIHP-NGDNLILGSYDKKMCWFDLDLSSKP-YKTLR-----LHEKAVRSVA 657 (733)
T ss_pred --cceEEEehhHHHHHHHHhcCCeeeeeeeecC-CCCeEEEecCCCeeEEEEcccCcch-hHHhh-----hhhhhhhhhh
Confidence 7899999999888888888888999999999 8899999999999999999765331 33333 5678999999
Q ss_pred EcCCCCEEEEEeCCCeEEEEe
Q psy9598 822 WSPDGTTCALTDSYGHLLVYG 842 (1915)
Q Consensus 822 fSpdg~~Lasg~~dG~I~Iwd 842 (1915)
|++.-.+||+|+.||.+.||.
T Consensus 658 ~H~ryPLfas~sdDgtv~Vfh 678 (733)
T KOG0650|consen 658 FHKRYPLFASGSDDGTVIVFH 678 (733)
T ss_pred hccccceeeeecCCCcEEEEe
Confidence 999999999999999999986
|
|
| >KOG1472|consensus | Back alignment and domain information |
|---|
Probab=99.76 E-value=8.7e-19 Score=219.42 Aligned_cols=104 Identities=34% Similarity=0.538 Sum_probs=98.1
Q ss_pred hhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCccccccCccchhhHHhhhcCCCCCCHHHHHHHHHHHHHHhhhhcCCC
Q psy9598 1532 NWKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQNK 1611 (1915)
Q Consensus 1532 ~~~~~~~~ll~~l~~~~~s~~F~~pv~~~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~Dv~lif~Na~~yN~~~ 1611 (1915)
.+......+|..|.+|.++|||.+||+..++||||++|++||||.||+.+|..++|.....|..|+.+||+||+.||...
T Consensus 606 ~~~s~~~~il~~l~~h~~awPf~~Pv~~~e~pdyy~~I~~pmDl~tM~~~l~~~~y~~~~~f~ad~~~vf~ncr~yn~~~ 685 (720)
T KOG1472|consen 606 KLFSAIQNILDQLQNHGDAWPFLKPVNKKEVPDYYDVIKHPMDLRTMQNRLKDNQYTEVELFMADVVRVFANCRMYNGSD 685 (720)
T ss_pred hhhHHHHhHHhhhhcCCccCCccCccccccCCcHHHHhcccccHHHHhhhccccchhhHHHHHHHHHHHHhhhhccCCcc
Confidence 44566888999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH
Q psy9598 1612 RSKIYIMTTRLSEFAEEHLRRLTVR 1636 (1915)
Q Consensus 1612 ~s~i~~~a~~l~~~f~~~~~~~~~~ 1636 (1915)
+..|+.|..|..+|..++...+..
T Consensus 686 -~~y~k~~~~le~~~~~k~~~~i~~ 709 (720)
T KOG1472|consen 686 -TQYYKCAQALEKFFLFKLNELILR 709 (720)
T ss_pred -chheecccchhhhhcchhhhhhhh
Confidence 999999999999999999887653
|
|
| >KOG1034|consensus | Back alignment and domain information |
|---|
Probab=99.76 E-value=2e-17 Score=184.57 Aligned_cols=260 Identities=17% Similarity=0.270 Sum_probs=197.0
Q ss_pred CCCCcEEEEEEcCC----CCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCC-CEEEEEeCCCcEEEEECC
Q psy9598 474 GHLSAVFCVLFDKL----GEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRN-ILLAAGTVDKTIRIWNLQ 548 (1915)
Q Consensus 474 gH~~~V~~vafspd----g~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg-~~LaSgs~DgtIrVWDl~ 548 (1915)
.|....+.++|+-+ ..+||+||.-|.|+|.|+.++++...+.||...|+.|.|.|+. ++|++||.|.+||+|+++
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~ 166 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQ 166 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEecc
Confidence 58899999999753 4689999999999999999999999999999999999999975 799999999999999999
Q ss_pred CCceEEEee---cCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCcccccee-------------ccCcc-cc-
Q psy9598 549 TLAPISVLV---GHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTV-------------FHEPV-MF- 610 (1915)
Q Consensus 549 tg~~~~~l~---~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~-------------~~~~~-~~- 610 (1915)
+..++..+- ||.+.|.++.|+++ +.+|++++.|.+|++|++........+. +..+. .+
T Consensus 167 ~~~Cv~VfGG~egHrdeVLSvD~~~~----gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp 242 (385)
T KOG1034|consen 167 TDVCVAVFGGVEGHRDEVLSVDFSLD----GDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFP 242 (385)
T ss_pred CCeEEEEecccccccCcEEEEEEcCC----CCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccc
Confidence 999999875 69999999999984 5899999999999999998543211111 11000 00
Q ss_pred -ccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCC-----------CCceeEEeccCCCCeeEEE--EcCCCC
Q psy9598 611 -NERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVD-----------SPLGILEVEEHSDKVDSIQ--WSHSHL 676 (1915)
Q Consensus 611 -~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~-----------~~~~i~~l~~h~~~V~sl~--fspdg~ 676 (1915)
.....-|..+|-|+.|- |.++++-+.++.|..|...... ....+..+.-....|+-|. |.+-+.
T Consensus 243 ~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~ 320 (385)
T KOG1034|consen 243 DFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQK 320 (385)
T ss_pred cccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHH
Confidence 11233566777777775 4689999999999999872111 1111222333344555554 456688
Q ss_pred EEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECC
Q psy9598 677 RFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAF 752 (1915)
Q Consensus 677 ~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~ 752 (1915)
.||.|...|.|.+||+...... .............|...+|+.||.+|+..+. |++|.-||..
T Consensus 321 ~la~gnq~g~v~vwdL~~~ep~------------~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcd-d~~Vwrwdrv 383 (385)
T KOG1034|consen 321 MLALGNQSGKVYVWDLDNNEPP------------KCTTLTHSKSGSTVRQTSFSRDGSILVLVCD-DGTVWRWDRV 383 (385)
T ss_pred HHhhccCCCcEEEEECCCCCCc------------cCceEEeccccceeeeeeecccCcEEEEEeC-CCcEEEEEee
Confidence 9999999999999999876521 1111122334567889999999999999998 9999999853
|
|
| >cd05522 Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_like subfamily, specific to fungi | Back alignment and domain information |
|---|
Probab=99.76 E-value=9.4e-19 Score=174.36 Aligned_cols=94 Identities=26% Similarity=0.381 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHcC------CCCCCCCCCCCCCCCCCccccccCccchhhHHhhhcCCCCCCHHHHHHHHHHHHHHhhhhc
Q psy9598 1535 NECREVLETLWVC------PDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYN 1608 (1915)
Q Consensus 1535 ~~~~~ll~~l~~~------~~s~~F~~pv~~~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~Dv~lif~Na~~yN 1608 (1915)
.++..|+..|++. +.+.||..+|++..+|+||++|++||||+||++||..+.|.++++|..||+|||.||+.||
T Consensus 4 ~~~~~i~~~v~~~~d~~g~~l~~~F~~~p~~~~~pdYy~~I~~Pmdl~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yn 83 (104)
T cd05522 4 ARIKNILKGLRKERDENGRLLTLHFEKLPDKAREPEYYQEISNPISLDDIKKKVKRRKYKSFDQFLNDLNLMFENAKLYN 83 (104)
T ss_pred HHHHHHHHHHHHHhCcCCCcccHHHhcCCCccccCcHHHHhCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 4566777777764 4488999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHH
Q psy9598 1609 QNKRSKIYIMTTRLSEFAEEH 1629 (1915)
Q Consensus 1609 ~~~~s~i~~~a~~l~~~f~~~ 1629 (1915)
+++ |.+|.+|..|++.|+.+
T Consensus 84 ~~~-s~i~~~A~~l~~~f~~l 103 (104)
T cd05522 84 END-SQEYKDAVLLEKEARLL 103 (104)
T ss_pred CCC-CHHHHHHHHHHHHHHHh
Confidence 988 99999999999999874
|
Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >smart00297 BROMO bromo domain | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.6e-18 Score=176.15 Aligned_cols=101 Identities=38% Similarity=0.600 Sum_probs=96.1
Q ss_pred hhhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCccccccCccchhhHHhhhcCCCCCCHHHHHHHHHHHHHHhhhhcCC
Q psy9598 1531 FNWKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQN 1610 (1915)
Q Consensus 1531 ~~~~~~~~~ll~~l~~~~~s~~F~~pv~~~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~Dv~lif~Na~~yN~~ 1610 (1915)
..+...|..|++.+.+++.+++|..||++..+|+||++|++||||++|++||++|.|.|+.+|..||++||.||+.||++
T Consensus 6 ~~~~~~~~~i~~~~~~~~~~~~F~~~~~~~~~p~Y~~~i~~P~dl~~I~~kl~~~~Y~s~~ef~~D~~li~~Na~~~n~~ 85 (107)
T smart00297 6 KKLQSLLKAVLDKLDSHRLSWPFLKPVDRKEAPDYYDIIKKPMDLSTIKKKLENGKYSSVEEFVADVQLMFSNAKTYNGP 85 (107)
T ss_pred HHHHHHHHHHHHHHHhCccchhhccCCChhhccCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 34667899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCHHHHHHHHHHHHHHHHHHH
Q psy9598 1611 KRSKIYIMTTRLSEFAEEHLRR 1632 (1915)
Q Consensus 1611 ~~s~i~~~a~~l~~~f~~~~~~ 1632 (1915)
+ |.+|.+|..|.+.|+++|++
T Consensus 86 ~-s~~~~~a~~l~~~f~~~~~~ 106 (107)
T smart00297 86 D-SEVYKDAKKLEKFFEKKLRE 106 (107)
T ss_pred C-CHHHHHHHHHHHHHHHHHhh
Confidence 7 99999999999999999875
|
|
| >KOG1188|consensus | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.2e-17 Score=185.54 Aligned_cols=288 Identities=16% Similarity=0.224 Sum_probs=200.7
Q ss_pred CEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeC--CCCEEEEEeCCCcEEEEECCCCceEEEe--ecCC-CCe
Q psy9598 489 EVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDN--RNILLAAGTVDKTIRIWNLQTLAPISVL--VGHQ-GII 563 (1915)
Q Consensus 489 ~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafsp--dg~~LaSgs~DgtIrVWDl~tg~~~~~l--~~h~-~~V 563 (1915)
..+|++...|.|+|||..+|+.+..|++|...++.+.|.. ....+.+|+.||+|++||+++......+ ..|. .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 5789999999999999999999999999999999999977 4678999999999999999886655443 4455 345
Q ss_pred EEEEeccCccCCCcEEEEEe----CCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCC-CcEEEEEeC
Q psy9598 564 TGVNFCPLEVNGFNYLASTS----TDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPG-GLFLATGSG 638 (1915)
Q Consensus 564 ~sl~fsp~~~~d~~~L~sgs----~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspd-g~~Lasgs~ 638 (1915)
.|++..- ..+.+++|+ .+..|.+||++..+.... .....|...|+++.|+|. .++|++|+.
T Consensus 121 ~~ld~nc----k~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~----------~~~eSH~DDVT~lrFHP~~pnlLlSGSv 186 (376)
T KOG1188|consen 121 ICLDLNC----KKNIIACGTELTRSDASVVLWDVRSEQQLLR----------QLNESHNDDVTQLRFHPSDPNLLLSGSV 186 (376)
T ss_pred eEeeccC----cCCeEEeccccccCceEEEEEEeccccchhh----------hhhhhccCcceeEEecCCCCCeEEeecc
Confidence 5665543 346777765 477899999998764211 122367899999999995 579999999
Q ss_pred CCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCC-CEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCcccccc
Q psy9598 639 DHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSH-LRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDE 717 (1915)
Q Consensus 639 Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg-~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~ 717 (1915)
||.|.|||+.....-..+...-.|...|.++.|..++ ..|.+-+..++..+|++..+............ .......
T Consensus 187 DGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~---~~d~r~~ 263 (376)
T KOG1188|consen 187 DGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVS---ADDLRKE 263 (376)
T ss_pred cceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccch---hhhHHhh
Confidence 9999999996554444455555678889999999876 46889999999999999877632211100000 0000011
Q ss_pred ccccccEEEEEECCCCCEEEEEEecCCeEEEEEC---CC---CceEEEeeC-CCCCeEEEEEccCCCCEEEEEecCceEE
Q psy9598 718 TNKKIKVTMVAWDASDRWVITAINFNFQIKIWDA---FN---GDLVQVLKG-HTNEVFVLESHPFDSRVLLSAGHDGLII 790 (1915)
Q Consensus 718 ~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~---~t---g~~i~~l~g-H~~~V~sl~~sp~dg~~LaSgs~DG~I~ 790 (1915)
.....-|.+.+ ..+..+++++++.-+...++-+ .+ ++.+..+.| |...|.++.|.. .+.++.|||.||.|.
T Consensus 264 ~~~dY~I~~~~-~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~-~~~~l~TGGEDG~l~ 341 (376)
T KOG1188|consen 264 DNCDYVINEHS-PGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDV-KNDVLYTGGEDGLLQ 341 (376)
T ss_pred hhhhheeeccc-CCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhc-ccceeeccCCCceEE
Confidence 11112222222 2233333333331344444432 22 445666776 667788888876 889999999999999
Q ss_pred EEECC
Q psy9598 791 IWDIL 795 (1915)
Q Consensus 791 IWdl~ 795 (1915)
+|...
T Consensus 342 ~Wk~~ 346 (376)
T KOG1188|consen 342 AWKVE 346 (376)
T ss_pred EEecC
Confidence 99863
|
|
| >KOG1009|consensus | Back alignment and domain information |
|---|
Probab=99.75 E-value=7e-17 Score=185.11 Aligned_cols=305 Identities=20% Similarity=0.239 Sum_probs=209.6
Q ss_pred ccccccCCCeEEEecccC-------CceeeeEEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECC--------C---
Q psy9598 446 REYSGPLSRSLMISSHKY-------SNLRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRAR--------D--- 507 (1915)
Q Consensus 446 r~~tg~~d~~~~i~~~~~-------~~~~~~~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~--------t--- 507 (1915)
+..+|+.|..+++|.... ..+..+..|.+|..+|++|-|+|+|.+||+|+++|.|.+|-.. +
T Consensus 28 ~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~ 107 (434)
T KOG1009|consen 28 KLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEAD 107 (434)
T ss_pred ceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhh
Confidence 778999999999995321 2567778899999999999999999999999999999999765 2
Q ss_pred -----CcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEE
Q psy9598 508 -----GKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLAST 582 (1915)
Q Consensus 508 -----g~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sg 582 (1915)
......+.+|...|..++|++++.++++|+.|.++++||+..|.....+..|...|..++|.|.. +++++-
T Consensus 108 ~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~----qyv~s~ 183 (434)
T KOG1009|consen 108 LNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLN----QYVASK 183 (434)
T ss_pred hCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhh----hhhhhh
Confidence 23456788999999999999999999999999999999999999999999999999999999965 899999
Q ss_pred eCCCeEEEEecccCccccceecc---------Ccccccccc--CCCCCceEEEEECCCCcEEEEEeC----CCeE-----
Q psy9598 583 STDGCIGFWKYKLDIDISKTVFH---------EPVMFNERI--RPGNAHILCSSFSPGGLFLATGSG----DHHV----- 642 (1915)
Q Consensus 583 s~DgtI~iWDl~~~~~~~~~~~~---------~~~~~~~~~--~~~~~~V~~l~fspdg~~Lasgs~----Dg~I----- 642 (1915)
+.|...+.+.+.....+...... .......-+ .........++|+|+|.+|++... .+.+
T Consensus 184 s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~t 263 (434)
T KOG1009|consen 184 SSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTS 263 (434)
T ss_pred ccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeecee
Confidence 98887777766554332222110 000000000 011233456799999999988654 1111
Q ss_pred EEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccc
Q psy9598 643 RVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKI 722 (1915)
Q Consensus 643 ~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 722 (1915)
++|+- ......+..+.+...++..+.|+|- .|.++... ...
T Consensus 264 Yvfsr--k~l~rP~~~lp~~~k~~lavr~~pV--------------y~elrp~~----------------------~~~- 304 (434)
T KOG1009|consen 264 YVFSR--KDLKRPAARLPSPKKPALAVRFSPV--------------YYELRPLS----------------------SEK- 304 (434)
T ss_pred Eeecc--ccccCceeecCCCCcceEEEEeeee--------------EEEecccc----------------------ccc-
Confidence 22221 1111122222333333333333321 12111100 000
Q ss_pred cEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEee-CCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCcc
Q psy9598 723 KVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLK-GHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQ 799 (1915)
Q Consensus 723 ~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~-gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~ 799 (1915)
. +---|-+-.+++++ ...|+|||..+..++..+. -|-..|+.++|++ +|.+|+..+.||.+.+--+...+.
T Consensus 305 -~--~~~lpyrlvfaiAt--~~svyvydtq~~~P~~~v~nihy~~iTDiaws~-dg~~l~vSS~DGyCS~vtfe~~el 376 (434)
T KOG1009|consen 305 -F--LFVLPYRLVFAIAT--KNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSD-DGSVLLVSSTDGFCSLVTFEPWEL 376 (434)
T ss_pred -c--ccccccceEEEEee--cceEEEeccccccceEEEeeeeeeeecceeecC-CCcEEEEeccCCceEEEEEcchhc
Confidence 0 11112333344444 5789999999888777665 6888999999999 999999999999988877766555
|
|
| >PF00439 Bromodomain: Bromodomain; InterPro: IPR001487 Bromodomains are found in a variety of mammalian, invertebrate and yeast DNA-binding proteins [] | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.1e-18 Score=166.95 Aligned_cols=84 Identities=46% Similarity=0.790 Sum_probs=79.8
Q ss_pred HHHHHHHHhcCCCCCCCCCCCCCCCCCCccccCCCcCCHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhhcCCCCCHHH
Q psy9598 122 CREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQNKRSKIY 201 (1915)
Q Consensus 122 ~~~il~~l~~~~~~~~F~~pvd~~~~pdY~~iIk~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~Lif~N~~~yN~~~~s~i~ 201 (1915)
|..||+.|++++.+++|..||+...+|+|+++|++||||+||++||++|.|.++.+|..||+|||.||+.||+++ |.+|
T Consensus 1 C~~il~~l~~~~~~~~F~~~~~~~~~p~y~~~i~~P~dL~~I~~kl~~~~Y~s~~~f~~Dv~~i~~Na~~yn~~~-s~~~ 79 (84)
T PF00439_consen 1 CREILEELMKHPISSPFSKPVDPKEYPDYYEIIKNPMDLSTIRKKLENGKYKSIEEFEADVRLIFQNARRYNPPD-SPIY 79 (84)
T ss_dssp HHHHHHHHHTSTTGGGGSSSTHTTTSTTHHHHSSSS--HHHHHHHHHTTSSSSHHHHHHHHHHHHHHHHHHSCTT-SHHH
T ss_pred CHHHHHHHHcCCCchhhcCCCChhhCCCHHHHHhhccchhhhhHHhhccchhhHHHHHHHHHHHHHHHHHHCCCc-CHHH
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999966 9999
Q ss_pred HHHHH
Q psy9598 202 IMTTR 206 (1915)
Q Consensus 202 ~~a~~ 206 (1915)
.+|.+
T Consensus 80 ~~A~~ 84 (84)
T PF00439_consen 80 KAAEK 84 (84)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 99974
|
Bromodomains can interact with acetylated lysine []. In some proteins, the classical bromodomain has diverged to such an extent that parts of the region are either missing or contain an insertion (e.g., mammalian protein HRX, Caenorhabditis elegans hypothetical protein ZK783.4, yeast protein YTA7). The bromodomain may occur as a single copy, or in duplicate. The precise function of the domain is unclear, but it may be involved in protein-protein interactions and may play a role in assembly or activity of multi-component complexes involved in transcriptional activation [].; GO: 0005515 protein binding; PDB: 3P1C_A 4A9K_B 3SVH_A 3P1E_B 3P1F_A 1JSP_B 2L85_A 3P1D_B 3DWY_B 2D82_A .... |
| >KOG0008|consensus | Back alignment and domain information |
|---|
Probab=99.74 E-value=5e-18 Score=216.99 Aligned_cols=215 Identities=23% Similarity=0.370 Sum_probs=172.9
Q ss_pred HHHHhcCCCccCCCCCCCCCCCCCccccccCCCCCHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhhcCCCCHHHHHHH
Q psy9598 1381 GLEEVMGLSVAEPFLVPVDISQYPAYAYVVEYPVDLTTLRARFQNRFYRRITSAQFDVRYLAANAEKFNEPHSNIVKYAR 1460 (1915)
Q Consensus 1381 ~~~~~~~~~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~tI~~rl~~~~Y~~~~~~~~D~~l~~~Na~~yN~~~s~i~~~a~ 1460 (1915)
.++++...+...+|..||+....++||.||..||||.++++.+..+.|...+.|+.|+.||+.|..+||+|.+.....|+
T Consensus 1269 i~n~~~~~~~t~~f~~Pv~~k~v~dyy~vi~~P~~lq~~kk~v~kr~y~~r~~fle~~~~~~~ns~~yng~~~~~t~~~q 1348 (1563)
T KOG0008|consen 1269 IINQARSSPNTYPFPTPVNAKEVKDYYRVITPPMDLQTQKKLVRKRLYESREHFLEELPLIVSNSTKYNGPLASLTRQQQ 1348 (1563)
T ss_pred HHHHHhcCCCCcCCCCccchhhccchhhccCCCcchHHHHHHHHHHHHHHHHHHHHHhHHHhhchhhhcCchHHHHHHHH
Confidence 45667778889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCccchhhhhcccccCCCChhhhhhhhhhhccccCCcchhhhhHHHhhhhhcCCchhhHHHHHHH
Q psy9598 1461 IITDLLLRIIKEPNPVDVPVVYHELLQNYETSSSEEEEEEDSKSRQRRVRPTAVTRAQREAMNQKKLKRPFNWKNECREV 1540 (1915)
Q Consensus 1461 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 1540 (1915)
.+...+-..+..-. ..+ .+........-.......+ -..-.+
T Consensus 1349 ~mls~~~~~~~eke--------dk~-----------------------------~~lEk~Inplld~~d~v~~-~~~d~~ 1390 (1563)
T KOG0008|consen 1349 SMLSLCFEKLKEKE--------DKL-----------------------------WRLEKAINPLLDDDDQVAF-FILDNI 1390 (1563)
T ss_pred HHHHHHHHhhchhH--------HHH-----------------------------HHHHhhcCcccCccchhhH-hhhhhH
Confidence 88877755554300 000 0000000000000011112 335567
Q ss_pred HHHHHcCCCCCCCCCCCCCCCCCCccccccCccchhhHHhhhcCCCCCCHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHH
Q psy9598 1541 LETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQNKRSKIYIMTT 1620 (1915)
Q Consensus 1541 l~~l~~~~~s~~F~~pv~~~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~Dv~lif~Na~~yN~~~~s~i~~~a~ 1620 (1915)
+..+++.+.+|||++||+++..|+||.+|++||||.||.+++..+.|.+..+|.+||++|+.||..||+.. +.+..-|.
T Consensus 1391 vs~~~~ipes~~f~~~v~~k~~~~yy~kik~pmdl~~i~~n~~~~~y~s~~e~l~dv~~i~~n~~~~ng~e-~~y~~k~~ 1469 (1563)
T KOG0008|consen 1391 VSQMKEIPESWPFHEPVNKKRVPDYYKKIKNPMDLETILKNIPPHKYDSRSEFLDDVNLIYVNSVEYNGAE-SAYTKKAR 1469 (1563)
T ss_pred HHHHHhcchhcccccccchhhchHHHHHhcChhhHHHHhhcCCccccccHHHHhhhhHhhcccceeecCcc-ccccHHHH
Confidence 77788889999999999999999999999999999999999999999999999999999999999999987 88877787
Q ss_pred HHHHHHHHHHHHHH
Q psy9598 1621 RLSEFAEEHLRRLT 1634 (1915)
Q Consensus 1621 ~l~~~f~~~~~~~~ 1634 (1915)
.+-.+....+.+..
T Consensus 1470 k~~ev~~~~~~e~~ 1483 (1563)
T KOG0008|consen 1470 KIGEVGLANLLEYI 1483 (1563)
T ss_pred HHHHHHHHHHHHHH
Confidence 77776666555444
|
|
| >KOG0642|consensus | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.5e-17 Score=197.49 Aligned_cols=265 Identities=17% Similarity=0.253 Sum_probs=197.6
Q ss_pred ceeeeEEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCC--------CcEEEEEeCCCCCEEEEEEeCCCCEEEEE
Q psy9598 465 NLRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARD--------GKLLATLRGCSGEISDIAIDNRNILLAAG 536 (1915)
Q Consensus 465 ~~~~~~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~t--------g~~~~~l~gH~~~I~~Lafspdg~~LaSg 536 (1915)
++....++..|.+.|.+++|.+....|++|+.||+|++|++.. -+++.+|++|.++|.|+++.+++..+++|
T Consensus 283 ~w~ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysg 362 (577)
T KOG0642|consen 283 KWNIKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSG 362 (577)
T ss_pred ecceeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEee
Confidence 3455568999999999999999999999999999999999932 25789999999999999999999999999
Q ss_pred eCCCcEEEEECCC----------CceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccC
Q psy9598 537 TVDKTIRIWNLQT----------LAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHE 606 (1915)
Q Consensus 537 s~DgtIrVWDl~t----------g~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~ 606 (1915)
+.||+|+.|++.. .....++.||++.|+.+++++.. ..|++++.||+|++|+...... ..+..
T Consensus 363 g~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~----~~Llscs~DgTvr~w~~~~~~~---~~f~~ 435 (577)
T KOG0642|consen 363 GIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTK----DRLLSCSSDGTVRLWEPTEESP---CTFGE 435 (577)
T ss_pred ccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccc----cceeeecCCceEEeeccCCcCc---cccCC
Confidence 9999999996641 12356788999999999999855 7799999999999998766543 12221
Q ss_pred ccccccccCCCCCceEEEEECCCC-cEEEEEeCCCeEEEEEecCCCCCceeEEecc-------CCCCeeEEEEcCCCCEE
Q psy9598 607 PVMFNERIRPGNAHILCSSFSPGG-LFLATGSGDHHVRVYKMDGVDSPLGILEVEE-------HSDKVDSIQWSHSHLRF 678 (1915)
Q Consensus 607 ~~~~~~~~~~~~~~V~~l~fspdg-~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~-------h~~~V~sl~fspdg~~L 678 (1915)
+. ..+...++.|.... .++++ +..+..+++........+..+.. ....+.-|.++|.+.+.
T Consensus 436 ~~--------e~g~Plsvd~~ss~~a~~~~---s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~ 504 (577)
T KOG0642|consen 436 PK--------EHGYPLSVDRTSSRPAHSLA---SFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADIT 504 (577)
T ss_pred cc--------ccCCcceEeeccchhHhhhh---hcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCee
Confidence 11 11333445544332 12222 22333333322222222222211 12346778899999999
Q ss_pred EEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEE
Q psy9598 679 VSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQ 758 (1915)
Q Consensus 679 ~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~ 758 (1915)
+++..|+.|+++|..++..+. ....|...++++++.|+|.+|++++. |+.+++|.+....++.
T Consensus 505 ~~~hed~~Ir~~dn~~~~~l~----------------s~~a~~~svtslai~~ng~~l~s~s~-d~sv~l~kld~k~~~~ 567 (577)
T KOG0642|consen 505 FTAHEDRSIRFFDNKTGKILH----------------SMVAHKDSVTSLAIDPNGPYLMSGSH-DGSVRLWKLDVKTCVL 567 (577)
T ss_pred EecccCCceecccccccccch----------------heeeccceecceeecCCCceEEeecC-Cceeehhhccchheee
Confidence 999999999999998876332 23447788999999999999999999 9999999998877777
Q ss_pred EeeCCC
Q psy9598 759 VLKGHT 764 (1915)
Q Consensus 759 ~l~gH~ 764 (1915)
....|.
T Consensus 568 es~~~r 573 (577)
T KOG0642|consen 568 ESTAHR 573 (577)
T ss_pred cccccc
Confidence 766664
|
|
| >KOG2919|consensus | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.7e-16 Score=176.45 Aligned_cols=282 Identities=15% Similarity=0.151 Sum_probs=202.4
Q ss_pred EEEEEEeCCCCEEEEEeCCCcEEEEECCC-----C--ce-----EEEee-cCCCCeEEEEeccCc---cCCCcEEEEEeC
Q psy9598 521 ISDIAIDNRNILLAAGTVDKTIRIWNLQT-----L--AP-----ISVLV-GHQGIITGVNFCPLE---VNGFNYLASTST 584 (1915)
Q Consensus 521 I~~Lafspdg~~LaSgs~DgtIrVWDl~t-----g--~~-----~~~l~-~h~~~V~sl~fsp~~---~~d~~~L~sgs~ 584 (1915)
...+.|+|||..|++-+.|..+++|++.. + .. ..++. .....|...+|-+.- ..+..++++.+.
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 34578999999999999999999999842 1 11 11111 133567777776311 124589999999
Q ss_pred CCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEec----
Q psy9598 585 DGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVE---- 660 (1915)
Q Consensus 585 DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~---- 660 (1915)
+.-|++||.-++..-.....-.. . ..-....|++|+|||..|++|. ...|+|||+........+....
T Consensus 132 ~~PIh~wdaftG~lraSy~~ydh--~-----de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k 203 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKLRASYRAYDH--Q-----DEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGK 203 (406)
T ss_pred cCceeeeeccccccccchhhhhh--H-----HhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhccc
Confidence 99999999999875433322100 0 0113356899999999999875 5799999995433333333222
Q ss_pred -cCCCCeeEEEEcCCCC-EEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEE
Q psy9598 661 -EHSDKVDSIQWSHSHL-RFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVIT 738 (1915)
Q Consensus 661 -~h~~~V~sl~fspdg~-~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t 738 (1915)
+..+-|.+++|+|... .+++|+....+-||.-..+.. .....+|.+.|+.++|.++|..|++
T Consensus 204 ~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~p----------------l~llggh~gGvThL~~~edGn~lfs 267 (406)
T KOG2919|consen 204 FGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRP----------------LQLLGGHGGGVTHLQWCEDGNKLFS 267 (406)
T ss_pred ccccceeeeeeccCCCCcceeeecccceeeeEecCCCCc----------------eeeecccCCCeeeEEeccCcCeecc
Confidence 3367899999999765 889999888888875544432 2234478999999999999999999
Q ss_pred EEecCCeEEEEECCC-CceEEEeeCCCC-CeEEE--EEccCCCCEEEEEecCceEEEEECCC-CccccceeeeeeecCCC
Q psy9598 739 AINFNFQIKIWDAFN-GDLVQVLKGHTN-EVFVL--ESHPFDSRVLLSAGHDGLIIIWDILS-SKQRGYKWFHNIVEGQG 813 (1915)
Q Consensus 739 ~s~~Dg~I~vwD~~t-g~~i~~l~gH~~-~V~sl--~~sp~dg~~LaSgs~DG~I~IWdl~s-~~~~~~~~~~~~~~~~~ 813 (1915)
|...+-.|-+||++. ..++..|..|.+ .-..| ...| ++++|++|+.||.|++||+.. +.. ...+ +.+
T Consensus 268 GaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~-~~~~LasG~tdG~V~vwdlk~~gn~--~sv~-----~~~ 339 (406)
T KOG2919|consen 268 GARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDP-KGEILASGDTDGSVRVWDLKDLGNE--VSVT-----GNY 339 (406)
T ss_pred cccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCC-CCceeeccCCCccEEEEecCCCCCc--cccc-----ccc
Confidence 998899999999985 567778887765 22233 3456 889999999999999999987 443 2222 245
Q ss_pred CcceEEEEEcCCCCEEEEEeC
Q psy9598 814 EGALFDGKWSPDGTTCALTDS 834 (1915)
Q Consensus 814 ~~~V~~vafSpdg~~Lasg~~ 834 (1915)
...|..++++|--.++|+++.
T Consensus 340 sd~vNgvslnP~mpilatssG 360 (406)
T KOG2919|consen 340 SDTVNGVSLNPIMPILATSSG 360 (406)
T ss_pred cccccceecCcccceeeeccC
Confidence 567889999999777777765
|
|
| >cd05492 Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.5e-18 Score=167.30 Aligned_cols=97 Identities=20% Similarity=0.288 Sum_probs=86.1
Q ss_pred HHHHHHHHhc-CCCCCCCCCCCC-----CCCCCCccccCCCcCCHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhhcCC
Q psy9598 122 CREVLETLWV-CPDSEPFRKPVD-----KLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQN 195 (1915)
Q Consensus 122 ~~~il~~l~~-~~~~~~F~~pvd-----~~~~pdY~~iIk~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~Lif~N~~~yN~~ 195 (1915)
+..++..+.. -+.+.||..||. ..++|+||++|++||||+||++||++|.|+++++|..||+|||.||+.||++
T Consensus 5 L~f~~~~~k~~lp~~~~~~~~v~~~~~~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~LI~~N~~~yNg~ 84 (109)
T cd05492 5 LKFIVSRMKSWLPPDTTNRAIVLNKRGKATKLPKRRRLIHTHLDVADIQEKINSEKYTSLEEFKADALLLLHNTAIFHGA 84 (109)
T ss_pred HHHHHHHHHhcCcccccccccccccCchhccCCCHHHHhCCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 3455666666 566899999995 4469999999999999999999999999999999999999999999999997
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHH
Q psy9598 196 KRSKIYIMTTRLSEFAEEHLRRLT 219 (1915)
Q Consensus 196 ~~s~i~~~a~~l~~~f~~~~~~~~ 219 (1915)
+ |.+|.+|..|-+....-+.+|.
T Consensus 85 ~-s~~~~~A~~l~~d~~~el~Ei~ 107 (109)
T cd05492 85 D-SEQYDAARWLYRDTCHDLRELR 107 (109)
T ss_pred C-CHHHHHHHHHHHHHHHHHHHHh
Confidence 6 9999999999998888777763
|
ZMYND11 or BS69 is a ubiquitously expressed nuclear protein that has been shown to associate with chromatin. It interacts with chromatin remodeling factors and might play a role in chromatin remodeling and gene expression. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >KOG1188|consensus | Back alignment and domain information |
|---|
Probab=99.74 E-value=1e-16 Score=180.23 Aligned_cols=288 Identities=16% Similarity=0.246 Sum_probs=207.9
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCcccc
Q psy9598 531 ILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMF 610 (1915)
Q Consensus 531 ~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~ 610 (1915)
+.+|++...|+|++||..+++.+..+.+|...++.+.|.... ..+.+.+|+.||+|++||+++......+......
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~d--s~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~-- 116 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCD--SPHGVISCSSDGTVRLWDIRSQAESARISWTQQS-- 116 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCC--CCCeeEEeccCCeEEEEEeecchhhhheeccCCC--
Confidence 568888889999999999999999999999999999998743 4589999999999999999988765555443111
Q ss_pred ccccCCCCCceEEEEECCCCcEEEEEeC----CCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCC-CEEEEEeCCC
Q psy9598 611 NERIRPGNAHILCSSFSPGGLFLATGSG----DHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSH-LRFVSGSRDG 685 (1915)
Q Consensus 611 ~~~~~~~~~~V~~l~fspdg~~Lasgs~----Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg-~~L~sgs~DG 685 (1915)
.....|++.+..++.+++|+. +-.|.+||++....... .-...|...|++|+|+|.. ++|+|||.||
T Consensus 117 -------~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~-~~~eSH~DDVT~lrFHP~~pnlLlSGSvDG 188 (376)
T KOG1188|consen 117 -------GTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLR-QLNESHNDDVTQLRFHPSDPNLLLSGSVDG 188 (376)
T ss_pred -------CCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhh-hhhhhccCcceeEEecCCCCCeEEeecccc
Confidence 246678888778888888754 67899999975544222 2357899999999999965 5899999999
Q ss_pred cEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCC-CEEEEEEecCCeEEEEECCCCceEEEeeCCC
Q psy9598 686 TALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASD-RWVITAINFNFQIKIWDAFNGDLVQVLKGHT 764 (1915)
Q Consensus 686 ~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg-~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~ 764 (1915)
.|.|||+.... ..........+...|.++.|..++ ..|.+-+. ..+..+|++..+.+...+....
T Consensus 189 LvnlfD~~~d~-------------EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH-~Etf~~~ele~~~~~~~~~~~~ 254 (376)
T KOG1188|consen 189 LVNLFDTKKDN-------------EEDALLHVINHGSSIHLIGWLSKKYKRIMCLTH-METFAIYELEDGSEETWLENPD 254 (376)
T ss_pred eEEeeecCCCc-------------chhhHHHhhcccceeeeeeeecCCcceEEEEEc-cCceeEEEccCCChhhcccCcc
Confidence 99999987542 111122334567789999999887 34555555 8999999999887655543221
Q ss_pred ----------CCeEEEE-EccCCCCEEEEEec-CceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEE
Q psy9598 765 ----------NEVFVLE-SHPFDSRVLLSAGH-DGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALT 832 (1915)
Q Consensus 765 ----------~~V~sl~-~sp~dg~~LaSgs~-DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg 832 (1915)
..-+.|. .+|.+..+++.++. -|...++-+.......+.+-...+.++|...|.++.|...+.++.+|
T Consensus 255 ~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TG 334 (376)
T KOG1188|consen 255 VSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTG 334 (376)
T ss_pred chhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeecc
Confidence 0001121 23546666666665 56666665542111112222234456666788999999999999999
Q ss_pred eCCCeEEEEeCC
Q psy9598 833 DSYGHLLVYGLG 844 (1915)
Q Consensus 833 ~~dG~I~Iwdl~ 844 (1915)
+.||.|.+|...
T Consensus 335 GEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 335 GEDGLLQAWKVE 346 (376)
T ss_pred CCCceEEEEecC
Confidence 999999999863
|
|
| >KOG0642|consensus | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.4e-17 Score=195.82 Aligned_cols=269 Identities=20% Similarity=0.255 Sum_probs=204.0
Q ss_pred EEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCC--------CceEEEeecCCCCeEEEEeccCccCCCcEEEEEe
Q psy9598 512 ATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQT--------LAPISVLVGHQGIITGVNFCPLEVNGFNYLASTS 583 (1915)
Q Consensus 512 ~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~t--------g~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs 583 (1915)
.++..|...|..++|.+....|++|+.||+|.+|+++. ..++.+|.+|.++|.|+++.+ ++..+++|+
T Consensus 288 ~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~----n~~~~ysgg 363 (577)
T KOG0642|consen 288 FTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPS----NGEHCYSGG 363 (577)
T ss_pred eeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecC----CceEEEeec
Confidence 47788999999999999999999999999999999932 357889999999999999998 459999999
Q ss_pred CCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCC
Q psy9598 584 TDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHS 663 (1915)
Q Consensus 584 ~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~ 663 (1915)
.||+|+.|++... .-......+......+.+|...|+.+++|.....|++++.||+|++|.... ..+ +.+....-.
T Consensus 364 ~Dg~I~~w~~p~n--~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~-~~~-~~f~~~~e~ 439 (577)
T KOG0642|consen 364 IDGTIRCWNLPPN--QDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTE-ESP-CTFGEPKEH 439 (577)
T ss_pred cCceeeeeccCCC--CCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCC-cCc-cccCCcccc
Confidence 9999999987622 122333345566777889999999999999999999999999999999843 222 222222233
Q ss_pred CCeeEEEEcCCC-CEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEec
Q psy9598 664 DKVDSIQWSHSH-LRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINF 742 (1915)
Q Consensus 664 ~~V~sl~fspdg-~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~ 742 (1915)
+.-.+|.|-... .+.++...-|.--++++...+...+.... ..........++.+.++|.+.+.+++..
T Consensus 440 g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~---------~~~~~~~~~~in~vVs~~~~~~~~~~he- 509 (577)
T KOG0642|consen 440 GYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESS---------ASPGPRRYPQINKVVSHPTADITFTAHE- 509 (577)
T ss_pred CCcceEeeccchhHhhhhhcccccccchhhhhhhheeecccc---------CCCcccccCccceEEecCCCCeeEeccc-
Confidence 344555554332 23333333344444444444322211100 0111113356788999999999999888
Q ss_pred CCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCcc
Q psy9598 743 NFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQ 799 (1915)
Q Consensus 743 Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~ 799 (1915)
|+.|+++|..++.+++....|...|+++++.| +|-+|++|++||.|++|.+....+
T Consensus 510 d~~Ir~~dn~~~~~l~s~~a~~~svtslai~~-ng~~l~s~s~d~sv~l~kld~k~~ 565 (577)
T KOG0642|consen 510 DRSIRFFDNKTGKILHSMVAHKDSVTSLAIDP-NGPYLMSGSHDGSVRLWKLDVKTC 565 (577)
T ss_pred CCceecccccccccchheeeccceecceeecC-CCceEEeecCCceeehhhccchhe
Confidence 99999999999999999999999999999999 999999999999999999976655
|
|
| >cd04369 Bromodomain Bromodomain | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.8e-18 Score=170.14 Aligned_cols=96 Identities=38% Similarity=0.626 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHhcC--CCCCCCCCCCCCCCCCCccccCCCcCCHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhhcCCC
Q psy9598 119 KNECREVLETLWVC--PDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQNK 196 (1915)
Q Consensus 119 ~~~~~~il~~l~~~--~~~~~F~~pvd~~~~pdY~~iIk~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~Lif~N~~~yN~~~ 196 (1915)
...|..++..|.++ +.+++|..||+...+|+||++|++||||++|++||.++.|.++.+|.+||+|||.||+.||+++
T Consensus 2 ~~~~~~i~~~l~~~~~~~~~~F~~~~~~~~~~~Y~~~i~~P~~l~~I~~kl~~~~Y~s~~~f~~D~~li~~Na~~~n~~~ 81 (99)
T cd04369 2 KKKLRSLLDALKKLKRDLSEPFLEPVDPKEAPDYYEVIKNPMDLSTIKKKLKNGEYKSLEEFEADVRLIFSNAKTYNGPG 81 (99)
T ss_pred HHHHHHHHHHHHhhcccccHHHhcCCChhcCCCHHHHHhCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 35799999999999 9999999999999999999999999999999999999999999999999999999999999976
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q psy9598 197 RSKIYIMTTRLSEFAEEHL 215 (1915)
Q Consensus 197 ~s~i~~~a~~l~~~f~~~~ 215 (1915)
+.++.+|..|+..|++.+
T Consensus 82 -~~~~~~a~~l~~~~~~~~ 99 (99)
T cd04369 82 -SPIYKDAKKLEKLFEKLL 99 (99)
T ss_pred -CHHHHHHHHHHHHHHHhC
Confidence 999999999999998763
|
Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine. |
| >KOG4227|consensus | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.3e-16 Score=177.88 Aligned_cols=306 Identities=12% Similarity=0.126 Sum_probs=219.9
Q ss_pred EEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECC------CCceEEEeec-CCCCeEEEEeccCccCCCcEEEEEe
Q psy9598 511 LATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQ------TLAPISVLVG-HQGIITGVNFCPLEVNGFNYLASTS 583 (1915)
Q Consensus 511 ~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~------tg~~~~~l~~-h~~~V~sl~fsp~~~~d~~~L~sgs 583 (1915)
.+.+.+|.+.|++|.|+.++++||+|+.|..++||.+. +.+++..... |...|.|++|.. ....|++|+
T Consensus 49 qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~----~N~~~~SG~ 124 (609)
T KOG4227|consen 49 QKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDL----ENRFLYSGE 124 (609)
T ss_pred hhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEcc----CCeeEecCC
Confidence 34567999999999999999999999999999999985 3466666543 558999999986 458999999
Q ss_pred CCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCC
Q psy9598 584 TDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHS 663 (1915)
Q Consensus 584 ~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~ 663 (1915)
.+|+|.+.|+.+.+.+....-. ...+.|+.+..+|..+.|++.+.+|.|.+||++....+.....+....
T Consensus 125 ~~~~VI~HDiEt~qsi~V~~~~----------~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~ 194 (609)
T KOG4227|consen 125 RWGTVIKHDIETKQSIYVANEN----------NNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSG 194 (609)
T ss_pred CcceeEeeecccceeeeeeccc----------CcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCC
Confidence 9999999999987643322211 224689999999999999999999999999997655455555555556
Q ss_pred CCeeEEEEcCCCC-EEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEec
Q psy9598 664 DKVDSIQWSHSHL-RFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINF 742 (1915)
Q Consensus 664 ~~V~sl~fspdg~-~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~ 742 (1915)
....++-|+|-.. +|++++..|-+-+||++..+.......+. ..+........++.|+|+|..+++--.
T Consensus 195 ~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~---------~~L~~~~~~~M~~~~~~~G~Q~msiRR- 264 (609)
T KOG4227|consen 195 KNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMF---------KGLPQENTEWMGSLWSPSGNQFMSIRR- 264 (609)
T ss_pred ccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhcc---------ccCcccchhhhheeeCCCCCeehhhhc-
Confidence 6788888998754 67788899999999998765322111111 111111223456889999998887665
Q ss_pred CCeEEEEECCCCceEEEeeCCCC-------CeEEEEEccCCCCEEEEEecCceEEEEECCCCcccc----cee-------
Q psy9598 743 NFQIKIWDAFNGDLVQVLKGHTN-------EVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRG----YKW------- 804 (1915)
Q Consensus 743 Dg~I~vwD~~tg~~i~~l~gH~~-------~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~----~~~------- 804 (1915)
...-.+||+.+..|...-..|.. .+.+++|.. ...++||+.+-.|+||.+....... +-.
T Consensus 265 ~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~--D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~ 342 (609)
T KOG4227|consen 265 GKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFID--DYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPS 342 (609)
T ss_pred cCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeec--ceeeeccCcccceEEEecCCCccccCccccCcchhhCch
Confidence 45556788876544332223332 456677764 4559999999999999985422100 000
Q ss_pred --e---eeeecCCCCcceEEEEEcCCCCEEEEEeCCCeEEEEe
Q psy9598 805 --F---HNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYG 842 (1915)
Q Consensus 805 --~---~~~~~~~~~~~V~~vafSpdg~~Lasg~~dG~I~Iwd 842 (1915)
+ .-++...|...+..|.|+|...+|++.+....++||.
T Consensus 343 ~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS 385 (609)
T KOG4227|consen 343 EIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWS 385 (609)
T ss_pred hheecceeEEEecccccccceeecCCcceEeccchhhheeccc
Confidence 0 0012224557788899999999999999999999996
|
|
| >KOG2919|consensus | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.4e-16 Score=172.52 Aligned_cols=281 Identities=19% Similarity=0.254 Sum_probs=204.7
Q ss_pred EEEEEEcCCCCEEEEEECCCcEEEEECCCC--------c----EEEEEe-CCCCCEEEEEEe-------CCCCEEEEEeC
Q psy9598 479 VFCVLFDKLGEVIVTGADDLLIKLWRARDG--------K----LLATLR-GCSGEISDIAID-------NRNILLAAGTV 538 (1915)
Q Consensus 479 V~~vafspdg~~LaTGs~Dg~I~IWd~~tg--------~----~~~~l~-gH~~~I~~Lafs-------pdg~~LaSgs~ 538 (1915)
...+.|+|||..|++-+.|..+.+|++... . ...+++ .....|...+|- |+..++|+.+.
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 345789999999999999999999997421 1 111221 123457777774 57789999999
Q ss_pred CCcEEEEECCCCceEEEeec--CCC---CeEEEEeccCccCCCcEEEEEeCCCeEEEEec-ccCccccceeccCcccccc
Q psy9598 539 DKTIRIWNLQTLAPISVLVG--HQG---IITGVNFCPLEVNGFNYLASTSTDGCIGFWKY-KLDIDISKTVFHEPVMFNE 612 (1915)
Q Consensus 539 DgtIrVWDl~tg~~~~~l~~--h~~---~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl-~~~~~~~~~~~~~~~~~~~ 612 (1915)
+.-|++||.-+|+....+.+ |.. ...+++|+|+ |..|++|. ..+|++||+ +.+....... .+..
T Consensus 132 ~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~D----GeqlfaGy-krcirvFdt~RpGr~c~vy~-----t~~~ 201 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPD----GEQLFAGY-KRCIRVFDTSRPGRDCPVYT-----TVTK 201 (406)
T ss_pred cCceeeeeccccccccchhhhhhHHhhhhheeEEecCC----CCeEeecc-cceEEEeeccCCCCCCcchh-----hhhc
Confidence 99999999999998887764 443 3468999995 47776654 578999998 4443211111 1111
Q ss_pred ccCCCCCceEEEEECCCC-cEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeC-CCcEEEE
Q psy9598 613 RIRPGNAHILCSSFSPGG-LFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSR-DGTALIW 690 (1915)
Q Consensus 613 ~~~~~~~~V~~l~fspdg-~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~-DG~I~IW 690 (1915)
...+..+-|.|++|+|-. ..+++|+....+-||.-. ....+..+.+|.+.|+.++|+++|+.|++|+. |-.|.+|
T Consensus 202 ~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~---~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~W 278 (406)
T KOG2919|consen 202 GKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDD---GRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCW 278 (406)
T ss_pred ccccccceeeeeeccCCCCcceeeecccceeeeEecC---CCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEE
Confidence 122335778999999954 489999998888888763 33456667899999999999999999999984 7789999
Q ss_pred EccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCC-CceEEEeeCCCCCeEE
Q psy9598 691 YYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFN-GDLVQVLKGHTNEVFV 769 (1915)
Q Consensus 691 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~t-g~~i~~l~gH~~~V~s 769 (1915)
|++........+ .........-.-....|+|.+|++|+. ||.|++||+.+ |..+..+..|...|+.
T Consensus 279 DiR~~~~pv~~L------------~rhv~~TNQRI~FDld~~~~~LasG~t-dG~V~vwdlk~~gn~~sv~~~~sd~vNg 345 (406)
T KOG2919|consen 279 DIRYSRDPVYAL------------ERHVGDTNQRILFDLDPKGEILASGDT-DGSVRVWDLKDLGNEVSVTGNYSDTVNG 345 (406)
T ss_pred eehhccchhhhh------------hhhccCccceEEEecCCCCceeeccCC-CccEEEEecCCCCCcccccccccccccc
Confidence 998654221110 001111222233566789999999988 99999999998 7888999999999999
Q ss_pred EEEccCCCCEEEEEecC
Q psy9598 770 LESHPFDSRVLLSAGHD 786 (1915)
Q Consensus 770 l~~sp~dg~~LaSgs~D 786 (1915)
++++| .-.+++|++..
T Consensus 346 vslnP-~mpilatssGq 361 (406)
T KOG2919|consen 346 VSLNP-IMPILATSSGQ 361 (406)
T ss_pred eecCc-ccceeeeccCc
Confidence 99999 56777777654
|
|
| >cd05526 Bromo_polybromo_VI Bromodomain, polybromo repeat VI | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.8e-17 Score=163.11 Aligned_cols=100 Identities=17% Similarity=0.189 Sum_probs=92.5
Q ss_pred hhHHHHHHHHHHHHcCCC------CCCCCCCCCCCCCCCccccccCccchhhHHhhhcCCCCCCHHHHHHHHHHHHHHhh
Q psy9598 1532 NWKNECREVLETLWVCPD------SEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSR 1605 (1915)
Q Consensus 1532 ~~~~~~~~ll~~l~~~~~------s~~F~~pv~~~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~Dv~lif~Na~ 1605 (1915)
.+++.+..|+..|++|.+ |.||.++|+ ..|+||.+|++||||.+|++||+.|.|.++++|..||.|||+||+
T Consensus 3 ~vq~~l~~l~~~V~~~~D~~Gr~~s~~f~~LP~--~~~~~~~~ik~Pi~l~~Ik~ki~~~~Y~~ld~~~~D~~lmf~NAr 80 (110)
T cd05526 3 LVQELLATLFVSVMNHQDEEGRCYSDSLAELPE--LAVDGVGPKKIPLTLDIIKRNVDKGRYRRLDKFQEDMFEVLERAR 80 (110)
T ss_pred HHHHHHHHHHHHHHhccCCCCCCchHHHHHCCC--cccCchhhhcCCccHHHHHHHHHcCCcCcHHHHHHHHHHHHHHHH
Confidence 456778999999999876 789999999 446888999999999999999999999999999999999999999
Q ss_pred hhcCCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy9598 1606 NYNQNKRSKIYIMTTRLSEFAEEHLRRLT 1634 (1915)
Q Consensus 1606 ~yN~~~~s~i~~~a~~l~~~f~~~~~~~~ 1634 (1915)
+||.++ |.||.+|..|+.+|..+.+++.
T Consensus 81 ~yN~~~-S~iy~dA~eLq~~f~~~rd~~~ 108 (110)
T cd05526 81 RLSRTD-SEIYEDAVELQQFFIKIRDELC 108 (110)
T ss_pred HhCccc-CHHHHHHHHHHHHHHHHHHHHh
Confidence 999988 9999999999999999988875
|
Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine. |
| >KOG1587|consensus | Back alignment and domain information |
|---|
Probab=99.71 E-value=1e-15 Score=192.75 Aligned_cols=282 Identities=19% Similarity=0.253 Sum_probs=210.3
Q ss_pred cEEEEECCCC-ceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCC
Q psy9598 541 TIRIWNLQTL-APISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNA 619 (1915)
Q Consensus 541 tIrVWDl~tg-~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (1915)
.+.||++... .+-..+. ....|+|+.|+|.. .++|+.|+.+|.|.+||++.+.... +.........|..
T Consensus 223 ~~~vW~~~~p~~Pe~~~~-~~s~v~~~~f~p~~---p~ll~gG~y~GqV~lWD~~~~~~~~------~s~ls~~~~sh~~ 292 (555)
T KOG1587|consen 223 VLLVWSLKNPNTPELVLE-SPSEVTCLKFCPFD---PNLLAGGCYNGQVVLWDLRKGSDTP------PSGLSALEVSHSE 292 (555)
T ss_pred eEEEEecCCCCCceEEEe-cCCceeEEEeccCC---cceEEeeccCceEEEEEccCCCCCC------CcccccccccCCc
Confidence 7899999875 4444443 56789999999964 5899999999999999998875421 1122233446788
Q ss_pred ceEEEEECCCCcE--EEEEeCCCeEEEEEecCCCCCceeEEec---------cCCCCeeEEEEcCCC-CEEEEEeCCCcE
Q psy9598 620 HILCSSFSPGGLF--LATGSGDHHVRVYKMDGVDSPLGILEVE---------EHSDKVDSIQWSHSH-LRFVSGSRDGTA 687 (1915)
Q Consensus 620 ~V~~l~fspdg~~--Lasgs~Dg~I~IwDl~~~~~~~~i~~l~---------~h~~~V~sl~fspdg-~~L~sgs~DG~I 687 (1915)
.++.+.|..+..- +++++.||.|..|+++....+.....+. .....++++.|.+.. ..|++|+..|.|
T Consensus 293 ~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v 372 (555)
T KOG1587|consen 293 PVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKV 372 (555)
T ss_pred CeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEE
Confidence 8999999875444 9999999999999987544433332221 123468889998754 589999999998
Q ss_pred EEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECC-CCceEEEeeCCCCC
Q psy9598 688 LIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAF-NGDLVQVLKGHTNE 766 (1915)
Q Consensus 688 ~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~-tg~~i~~l~gH~~~ 766 (1915)
..-......... ............|.+.|.++.++|-+..++.++. |.+|+||... ...++..+..+...
T Consensus 373 ~~~~r~g~~~~~--------~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~ 443 (555)
T KOG1587|consen 373 YKGCRKGYTPAP--------EVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDY 443 (555)
T ss_pred EEEeccCCcccc--------cccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccce
Confidence 763322221000 0111223345568899999999999999888888 9999999987 67788888888888
Q ss_pred eEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q psy9598 767 VFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGGF 846 (1915)
Q Consensus 767 V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl~s~ 846 (1915)
|++++|||....+|+++..||.|.|||+.......+.... .+....+.+.|++.|.+|++|+..|++++|++...
T Consensus 444 v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~-----~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 444 VTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQK-----VCSPALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred eeeeEEcCcCceEEEEEcCCCceehhhhhccccCCccccc-----ccccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 9999999988889999999999999999776553233322 12456677889999999999999999999999743
|
|
| >KOG0322|consensus | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.7e-16 Score=172.46 Aligned_cols=295 Identities=16% Similarity=0.175 Sum_probs=204.6
Q ss_pred EEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEee-cCCCCeEEEEeccCccCCCcEEEEEeCCCeE
Q psy9598 510 LLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLV-GHQGIITGVNFCPLEVNGFNYLASTSTDGCI 588 (1915)
Q Consensus 510 ~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~-~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI 588 (1915)
+...|++|.+.|+++.|..++. |++|..-|.|++|++++...+..+. .|...|+.+...|. ..|.+-+.|+.+
T Consensus 6 P~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-----d~l~tqgRd~~L 79 (323)
T KOG0322|consen 6 PFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-----DSLDTQGRDPLL 79 (323)
T ss_pred CeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-----cchhhcCCCceE
Confidence 4567889999999999988775 9999999999999999999888888 56778999988873 688999999999
Q ss_pred EEEecccCccccceeccCccccccccCCCCCceEEEEECC-----CCc----EEEEEeCCC-eEEEEEecCCCCCceeEE
Q psy9598 589 GFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSP-----GGL----FLATGSGDH-HVRVYKMDGVDSPLGILE 658 (1915)
Q Consensus 589 ~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fsp-----dg~----~Lasgs~Dg-~I~IwDl~~~~~~~~i~~ 658 (1915)
.+|++..+..+.... -.++++.|.+ .++ .++.-+... .+++-|. .....+..
T Consensus 80 ~lw~ia~s~~i~i~S---------------i~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~---g~~tqv~i 141 (323)
T KOG0322|consen 80 ILWTIAYSAFISIHS---------------IVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDG---GDTTQVQI 141 (323)
T ss_pred EEEEccCcceEEEee---------------eeccccccccceeccCCCcchhheecCCcccchhhhhcc---CccceeEc
Confidence 999998753222111 1122222222 111 111111100 1222222 11111111
Q ss_pred ----eccCCCCeeEEEEcCC-CC--EEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECC
Q psy9598 659 ----VEEHSDKVDSIQWSHS-HL--RFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDA 731 (1915)
Q Consensus 659 ----l~~h~~~V~sl~fspd-g~--~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~sp 731 (1915)
-.+..+.+.|..+... +. +|++|..+|.|.+||+.++...... ....+.......|...|.++.+.+
T Consensus 142 ~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~------~~~~kv~~~~ash~qpvlsldyas 215 (323)
T KOG0322|consen 142 ADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQL------PQSSKVESPNASHKQPVLSLDYAS 215 (323)
T ss_pred cCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeecc------ccccccccchhhccCcceeeeech
Confidence 1234466777765433 22 5678889999999999987432211 111223344556888999999987
Q ss_pred CCCEEEEEEecCCeEEEEECCC--Cce--EEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeee
Q psy9598 732 SDRWVITAINFNFQIKIWDAFN--GDL--VQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHN 807 (1915)
Q Consensus 732 dg~~L~t~s~~Dg~I~vwD~~t--g~~--i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~ 807 (1915)
....=+.++. +..+..|++.. +.+ -..+.-..-.|..+.+-| |++++||+|+||.|+||+..+..+ +..+.
T Consensus 216 ~~~rGisgga-~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRp-D~KIlATAGWD~RiRVyswrtl~p--LAVLk- 290 (323)
T KOG0322|consen 216 SCDRGISGGA-DDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRP-DGKILATAGWDHRIRVYSWRTLNP--LAVLK- 290 (323)
T ss_pred hhcCCcCCCc-cccceeeeeccccCcccccceEEecCCCccceEEcc-CCcEEeecccCCcEEEEEeccCCc--hhhhh-
Confidence 7666666776 67788888753 332 222233344588889999 999999999999999999999998 66555
Q ss_pred eecCCCCcceEEEEEcCCCCEEEEEeCCCeEEEEeC
Q psy9598 808 IVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGL 843 (1915)
Q Consensus 808 ~~~~~~~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl 843 (1915)
.|.+.|.+++|+|+..++|+++.|+.|.+|++
T Consensus 291 ----yHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 291 ----YHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred ----hhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 56789999999999999999999999999986
|
|
| >KOG1538|consensus | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.3e-16 Score=185.31 Aligned_cols=277 Identities=16% Similarity=0.192 Sum_probs=207.7
Q ss_pred CEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccc
Q psy9598 520 EISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDI 599 (1915)
Q Consensus 520 ~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~ 599 (1915)
.|..++|-|||..|+.+. +..+.|||...|..+.++.+|.+.|+|++|+. +|..+++|+.|..|.+|.-.-..
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVycVAys~----dGkrFASG~aDK~VI~W~~klEG-- 86 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAK----DGKRFASGSADKSVIIWTSKLEG-- 86 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCCCcccccccccccceEEEEEEcc----CCceeccCCCceeEEEecccccc--
Confidence 799999999999887776 45799999999999999999999999999998 56999999999999999754321
Q ss_pred cceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEE
Q psy9598 600 SKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFV 679 (1915)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~ 679 (1915)
.+ ...|...|.|+.|+|-...|++++-+ ..-+|...... +. -......|.+.+|..||.+|+
T Consensus 87 -~L-----------kYSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~----V~-K~kss~R~~~CsWtnDGqyla 148 (1081)
T KOG1538|consen 87 -IL-----------KYSHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKS----VS-KHKSSSRIICCSWTNDGQYLA 148 (1081)
T ss_pred -ee-----------eeccCCeeeEeecCchHHHhhhcchh-hccccChhhhh----HH-hhhhheeEEEeeecCCCcEEE
Confidence 11 12477899999999999999988764 45688763211 11 112345688899999999999
Q ss_pred EEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCC-----EEEEEEecCCeEEEEECCCC
Q psy9598 680 SGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDR-----WVITAINFNFQIKIWDAFNG 754 (1915)
Q Consensus 680 sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~-----~L~t~s~~Dg~I~vwD~~tg 754 (1915)
.|-.+|+|.|-+-....... .....+...+|++++|+|... .+++... ..++.+|.+ +|
T Consensus 149 lG~~nGTIsiRNk~gEek~~--------------I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW-~qTLSFy~L-sG 212 (1081)
T KOG1538|consen 149 LGMFNGTISIRNKNGEEKVK--------------IERPGGSNSPIWSICWNPSSGEGRNDILAVADW-GQTLSFYQL-SG 212 (1081)
T ss_pred EeccCceEEeecCCCCcceE--------------EeCCCCCCCCceEEEecCCCCCCccceEEEEec-cceeEEEEe-cc
Confidence 99999999987433222111 112234678899999998743 4445544 667777665 45
Q ss_pred ceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEEeC
Q psy9598 755 DLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDS 834 (1915)
Q Consensus 755 ~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~ 834 (1915)
+.+..-..-.-.-.|+.+.+ +|.+++.||.|+.+.+|.-..-. +-++ +.....|+.++..|+++.++.|+.
T Consensus 213 ~~Igk~r~L~FdP~CisYf~-NGEy~LiGGsdk~L~~fTR~Gvr---LGTv-----g~~D~WIWtV~~~PNsQ~v~~GCq 283 (1081)
T KOG1538|consen 213 KQIGKDRALNFDPCCISYFT-NGEYILLGGSDKQLSLFTRDGVR---LGTV-----GEQDSWIWTVQAKPNSQYVVVGCQ 283 (1081)
T ss_pred eeecccccCCCCchhheecc-CCcEEEEccCCCceEEEeecCeE---Eeec-----cccceeEEEEEEccCCceEEEEEc
Confidence 55543333333457888888 99999999999999999764322 2222 234578999999999999999999
Q ss_pred CCeEEEEeCCCC
Q psy9598 835 YGHLLVYGLGGF 846 (1915)
Q Consensus 835 dG~I~Iwdl~s~ 846 (1915)
||+|--|++...
T Consensus 284 DGTiACyNl~fS 295 (1081)
T KOG1538|consen 284 DGTIACYNLIFS 295 (1081)
T ss_pred cCeeehhhhHHh
Confidence 999999987643
|
|
| >PF00439 Bromodomain: Bromodomain; InterPro: IPR001487 Bromodomains are found in a variety of mammalian, invertebrate and yeast DNA-binding proteins [] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.7e-17 Score=160.62 Aligned_cols=84 Identities=46% Similarity=0.790 Sum_probs=80.0
Q ss_pred HHHHHHHHHcCCCCCCCCCCCCCCCCCCccccccCccchhhHHhhhcCCCCCCHHHHHHHHHHHHHHhhhhcCCCCCHHH
Q psy9598 1537 CREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQNKRSKIY 1616 (1915)
Q Consensus 1537 ~~~ll~~l~~~~~s~~F~~pv~~~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~Dv~lif~Na~~yN~~~~s~i~ 1616 (1915)
|+.||+.|++++.+.+|..||+...+|+|+++|++||||++|++||++|.|.++.+|..||++||.||+.||+++ |.+|
T Consensus 1 C~~il~~l~~~~~~~~F~~~~~~~~~p~y~~~i~~P~dL~~I~~kl~~~~Y~s~~~f~~Dv~~i~~Na~~yn~~~-s~~~ 79 (84)
T PF00439_consen 1 CREILEELMKHPISSPFSKPVDPKEYPDYYEIIKNPMDLSTIRKKLENGKYKSIEEFEADVRLIFQNARRYNPPD-SPIY 79 (84)
T ss_dssp HHHHHHHHHTSTTGGGGSSSTHTTTSTTHHHHSSSS--HHHHHHHHHTTSSSSHHHHHHHHHHHHHHHHHHSCTT-SHHH
T ss_pred CHHHHHHHHcCCCchhhcCCCChhhCCCHHHHHhhccchhhhhHHhhccchhhHHHHHHHHHHHHHHHHHHCCCc-CHHH
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999988 9999
Q ss_pred HHHHH
Q psy9598 1617 IMTTR 1621 (1915)
Q Consensus 1617 ~~a~~ 1621 (1915)
.+|.+
T Consensus 80 ~~A~~ 84 (84)
T PF00439_consen 80 KAAEK 84 (84)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 99974
|
Bromodomains can interact with acetylated lysine []. In some proteins, the classical bromodomain has diverged to such an extent that parts of the region are either missing or contain an insertion (e.g., mammalian protein HRX, Caenorhabditis elegans hypothetical protein ZK783.4, yeast protein YTA7). The bromodomain may occur as a single copy, or in duplicate. The precise function of the domain is unclear, but it may be involved in protein-protein interactions and may play a role in assembly or activity of multi-component complexes involved in transcriptional activation [].; GO: 0005515 protein binding; PDB: 3P1C_A 4A9K_B 3SVH_A 3P1E_B 3P1F_A 1JSP_B 2L85_A 3P1D_B 3DWY_B 2D82_A .... |
| >KOG0303|consensus | Back alignment and domain information |
|---|
Probab=99.70 E-value=7e-16 Score=175.72 Aligned_cols=209 Identities=18% Similarity=0.283 Sum_probs=167.6
Q ss_pred EecCCCCcEEEEEEcC-CCCEEEEEECCCcEEEEECCCC-------cEEEEEeCCCCCEEEEEEeCC-CCEEEEEeCCCc
Q psy9598 471 VNLGHLSAVFCVLFDK-LGEVIVTGADDLLIKLWRARDG-------KLLATLRGCSGEISDIAIDNR-NILLAAGTVDKT 541 (1915)
Q Consensus 471 ~l~gH~~~V~~vafsp-dg~~LaTGs~Dg~I~IWd~~tg-------~~~~~l~gH~~~I~~Lafspd-g~~LaSgs~Dgt 541 (1915)
.+.||+++|..++|+| +...||+||.|.+|.||.+..+ +.+..|.||+..|--++|+|. .+.|+|++.|.+
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 4569999999999998 5678999999999999998754 356778999999999999996 568999999999
Q ss_pred EEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCce
Q psy9598 542 IRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHI 621 (1915)
Q Consensus 542 IrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V 621 (1915)
|.||++.+|..+.++. |.+.|+++.|+- +|.+|+++|.|..|+|||.+++..+.....+. ...-
T Consensus 156 v~iWnv~tgeali~l~-hpd~i~S~sfn~----dGs~l~TtckDKkvRv~dpr~~~~v~e~~~he-----------G~k~ 219 (472)
T KOG0303|consen 156 VSIWNVGTGEALITLD-HPDMVYSMSFNR----DGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHE-----------GAKP 219 (472)
T ss_pred EEEEeccCCceeeecC-CCCeEEEEEecc----CCceeeeecccceeEEEcCCCCcEeeeccccc-----------CCCc
Confidence 9999999999998887 999999999997 56999999999999999999987654442221 1223
Q ss_pred EEEEECCCCcEEEEEe---CCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEE-EEeCCCcEEEEEccCCc
Q psy9598 622 LCSSFSPGGLFLATGS---GDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFV-SGSRDGTALIWYYKCSQ 696 (1915)
Q Consensus 622 ~~l~fspdg~~Lasgs---~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~-sgs~DG~I~IWDl~~~~ 696 (1915)
..+.|-.+|.++.+|- .+..+-|||......+.....+...++ |.---|.++...++ +|-.|+.|+.|.+....
T Consensus 220 ~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnG-vl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 220 ARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNG-VLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred ceeEEeccCceeeeccccccccceeccCcccccCcceeEEeccCCc-eEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 4456777887555553 367899999987777777777765544 44344778777665 56689999999987665
|
|
| >KOG0290|consensus | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.3e-15 Score=164.32 Aligned_cols=308 Identities=17% Similarity=0.203 Sum_probs=207.6
Q ss_pred EEEEeCCCCCEEEEEEeC---CCCEEEEEeC----CCcEEEEECC--CCceEEEe-ecCCCCeEEEEeccCccCCC-cEE
Q psy9598 511 LATLRGCSGEISDIAIDN---RNILLAAGTV----DKTIRIWNLQ--TLAPISVL-VGHQGIITGVNFCPLEVNGF-NYL 579 (1915)
Q Consensus 511 ~~~l~gH~~~I~~Lafsp---dg~~LaSgs~----DgtIrVWDl~--tg~~~~~l-~~h~~~V~sl~fsp~~~~d~-~~L 579 (1915)
+..+..+ -.+.++.|+. ...+||.||. .+.|.|-.+. +++.+..- ..|.-+++.+.|.|+..+-. ++|
T Consensus 38 iy~Y~ap-~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlL 116 (364)
T KOG0290|consen 38 IYTYNAP-WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLL 116 (364)
T ss_pred EEEecCC-CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchh
Confidence 3444432 3567788873 2446777774 3556665443 44433322 35888999999999763222 344
Q ss_pred EEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECC-CCcEEEEEeCCCeEEEEEecCCCCCceeEE
Q psy9598 580 ASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSP-GGLFLATGSGDHHVRVYKMDGVDSPLGILE 658 (1915)
Q Consensus 580 ~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fsp-dg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~ 658 (1915)
++++ -.+++|.+......... . ......+...+..+++++.|+. +.++|.+.+-|-+..|||+........-..
T Consensus 117 ATs~--D~LRlWri~~ee~~~~~--~-~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQ 191 (364)
T KOG0290|consen 117 ATSS--DFLRLWRIGDEESRVEL--Q-SVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQ 191 (364)
T ss_pred hccc--CeEEEEeccCcCCceeh--h-hhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeE
Confidence 4443 36999998743211111 0 0111112233457889999987 567899999999999999965433334456
Q ss_pred eccCCCCeeEEEEcCCC-CEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCC-EE
Q psy9598 659 VEEHSDKVDSIQWSHSH-LRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDR-WV 736 (1915)
Q Consensus 659 l~~h~~~V~sl~fspdg-~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~-~L 736 (1915)
+-+|...|..|+|...+ ..|++.|.||.|++||++....-.+.. ...........++|++.+. ++
T Consensus 192 LIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIY-------------E~p~~~~pLlRLswnkqDpnym 258 (364)
T KOG0290|consen 192 LIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIY-------------EDPSPSTPLLRLSWNKQDPNYM 258 (364)
T ss_pred EEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEe-------------cCCCCCCcceeeccCcCCchHH
Confidence 78999999999999865 489999999999999999765322211 1112255677899998764 45
Q ss_pred EEEEecCCeEEEEECCC-CceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCc
Q psy9598 737 ITAINFNFQIKIWDAFN-GDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEG 815 (1915)
Q Consensus 737 ~t~s~~Dg~I~vwD~~t-g~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~ 815 (1915)
++-......|.|.|++. +.++..|.+|.+.|++|+|.|.....|+|||.|..+.|||+...-. ......++.-...+
T Consensus 259 ATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~--~~~~dPilay~a~~ 336 (364)
T KOG0290|consen 259 ATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPR--ENGEDPILAYTAGG 336 (364)
T ss_pred hhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccc--cCCCCchhhhhccc
Confidence 54444356799999985 6789999999999999999999999999999999999999976432 11111122223457
Q ss_pred ceEEEEEcC-CCCEEEEEeCCCeEEE
Q psy9598 816 ALFDGKWSP-DGTTCALTDSYGHLLV 840 (1915)
Q Consensus 816 ~V~~vafSp-dg~~Lasg~~dG~I~I 840 (1915)
.|..++|++ .+..|+++... .+.|
T Consensus 337 EVNqi~Ws~~~~Dwiai~~~k-klei 361 (364)
T KOG0290|consen 337 EVNQIQWSSSQPDWIAICFGK-KLEI 361 (364)
T ss_pred eeeeeeecccCCCEEEEEecC-eeeE
Confidence 899999996 56788877653 4433
|
|
| >KOG1587|consensus | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.8e-15 Score=187.59 Aligned_cols=281 Identities=18% Similarity=0.209 Sum_probs=201.0
Q ss_pred CCcEEEEECCCC-cEEEEEeCCCCCEEEEEEeC-CCCEEEEEeCCCcEEEEECCCCce--EE----EeecCCCCeEEEEe
Q psy9598 497 DLLIKLWRARDG-KLLATLRGCSGEISDIAIDN-RNILLAAGTVDKTIRIWNLQTLAP--IS----VLVGHQGIITGVNF 568 (1915)
Q Consensus 497 Dg~I~IWd~~tg-~~~~~l~gH~~~I~~Lafsp-dg~~LaSgs~DgtIrVWDl~tg~~--~~----~l~~h~~~V~sl~f 568 (1915)
++.+.||++... .+-..+. ....|+|++|+| +..+||.|+.+|.|.+||+..+.. .. ....|..+|+.+.|
T Consensus 221 ~~~~~vW~~~~p~~Pe~~~~-~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW 299 (555)
T KOG1587|consen 221 DGVLLVWSLKNPNTPELVLE-SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVW 299 (555)
T ss_pred CceEEEEecCCCCCceEEEe-cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEE
Confidence 358999999876 4444444 567899999999 467888888999999999987654 22 23468899999999
Q ss_pred ccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCC-CcEEEEEeCCCeEEEEEe
Q psy9598 569 CPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPG-GLFLATGSGDHHVRVYKM 647 (1915)
Q Consensus 569 sp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspd-g~~Lasgs~Dg~I~IwDl 647 (1915)
..... + .-|+++|.||.|+.|+++.-.................-......+++++|.+. -..+++|+..|.|..-.-
T Consensus 300 ~~~~~-~-~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r 377 (555)
T KOG1587|consen 300 LQNEH-N-TEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCR 377 (555)
T ss_pred eccCC-C-CceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEec
Confidence 88652 2 67999999999999987654332111111111101111123467889999884 567899999999877443
Q ss_pred cCCCC-C----ceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccc
Q psy9598 648 DGVDS-P----LGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKI 722 (1915)
Q Consensus 648 ~~~~~-~----~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 722 (1915)
.+... . ..+..+..|.++|.++.++|-+..++..+.|.+|+||...... ........+..
T Consensus 378 ~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~---------------~Pl~~~~~~~~ 442 (555)
T KOG1587|consen 378 KGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIA---------------SPLLSLDSSPD 442 (555)
T ss_pred cCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCC---------------Ccchhhhhccc
Confidence 22222 1 2233566789999999999988866666669999999654221 11122233445
Q ss_pred cEEEEEECCCCCEEEEEEecCCeEEEEECCC--CceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCC
Q psy9598 723 KVTMVAWDASDRWVITAINFNFQIKIWDAFN--GDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILS 796 (1915)
Q Consensus 723 ~V~~va~spdg~~L~t~s~~Dg~I~vwD~~t--g~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s 796 (1915)
.|++++|||....++++...+|.|.|||+.. ..++.+...+....+.+.|++ .+.+|++|...|+|.+|++..
T Consensus 443 ~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~-~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 443 YVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSP-NGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred eeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCC-CCcEEEEecCCCcEEEEEcCc
Confidence 5999999999988888887799999999864 455666665666677777887 899999999999999999964
|
|
| >cd04369 Bromodomain Bromodomain | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.6e-17 Score=163.77 Aligned_cols=96 Identities=38% Similarity=0.626 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHcC--CCCCCCCCCCCCCCCCCccccccCccchhhHHhhhcCCCCCCHHHHHHHHHHHHHHhhhhcCCC
Q psy9598 1534 KNECREVLETLWVC--PDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQNK 1611 (1915)
Q Consensus 1534 ~~~~~~ll~~l~~~--~~s~~F~~pv~~~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~Dv~lif~Na~~yN~~~ 1611 (1915)
...|..++..|..+ +.+.+|..||++..+|+||++|++||||.+|++||..|.|.++.+|..||+|||.||+.||+.+
T Consensus 2 ~~~~~~i~~~l~~~~~~~~~~F~~~~~~~~~~~Y~~~i~~P~~l~~I~~kl~~~~Y~s~~~f~~D~~li~~Na~~~n~~~ 81 (99)
T cd04369 2 KKKLRSLLDALKKLKRDLSEPFLEPVDPKEAPDYYEVIKNPMDLSTIKKKLKNGEYKSLEEFEADVRLIFSNAKTYNGPG 81 (99)
T ss_pred HHHHHHHHHHHHhhcccccHHHhcCCChhcCCCHHHHHhCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 35799999999999 9999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q psy9598 1612 RSKIYIMTTRLSEFAEEHL 1630 (1915)
Q Consensus 1612 ~s~i~~~a~~l~~~f~~~~ 1630 (1915)
|.++.+|..|+..|++.+
T Consensus 82 -~~~~~~a~~l~~~~~~~~ 99 (99)
T cd04369 82 -SPIYKDAKKLEKLFEKLL 99 (99)
T ss_pred -CHHHHHHHHHHHHHHHhC
Confidence 999999999999998753
|
Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine. |
| >KOG1517|consensus | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.9e-15 Score=188.88 Aligned_cols=295 Identities=20% Similarity=0.260 Sum_probs=210.7
Q ss_pred CCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCC---CCCEEEEEEeC--CCCEEEEEeCCCcEEEEECC
Q psy9598 474 GHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGC---SGEISDIAIDN--RNILLAAGTVDKTIRIWNLQ 548 (1915)
Q Consensus 474 gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH---~~~I~~Lafsp--dg~~LaSgs~DgtIrVWDl~ 548 (1915)
|....-..+.|+|-...|+++...-.|+|||...++++..|..+ ...|+.|.+-. |..+|++|+.||.|+||+-.
T Consensus 1062 ~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y 1141 (1387)
T KOG1517|consen 1062 GNNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDY 1141 (1387)
T ss_pred cCCCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccc
Confidence 33445567788988889999887779999999999998887644 34689998865 46689999999999999743
Q ss_pred -C----CceEEEeecC-------CCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCC
Q psy9598 549 -T----LAPISVLVGH-------QGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRP 616 (1915)
Q Consensus 549 -t----g~~~~~l~~h-------~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~ 616 (1915)
+ .+.+..+.+- .+.=.-+.|... ..+|+++|.-..|+|||.........+...
T Consensus 1142 ~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~----~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~----------- 1206 (1387)
T KOG1517|consen 1142 ADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQ----SGHLLVTGDVRSIRIWDAHKEQVVADIPYG----------- 1206 (1387)
T ss_pred ccccCCceeEEeeccccccCccCCCCCeeeehhhh----CCeEEecCCeeEEEEEecccceeEeecccC-----------
Confidence 2 2233322221 111123456542 356666666889999999877654444332
Q ss_pred CCCceEEEEECC-CCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCC--eeEEEEcCCCCE-EEEEeCCCcEEEEEc
Q psy9598 617 GNAHILCSSFSP-GGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDK--VDSIQWSHSHLR-FVSGSRDGTALIWYY 692 (1915)
Q Consensus 617 ~~~~V~~l~fsp-dg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~--V~sl~fspdg~~-L~sgs~DG~I~IWDl 692 (1915)
...-|++++-+- .|+.|++|..||.|++||.+.......+.....|+.. |..+.+.+.|.. |++|+.||.|++||+
T Consensus 1207 s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~Dl 1286 (1387)
T KOG1517|consen 1207 SSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDL 1286 (1387)
T ss_pred CCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEec
Confidence 234455554443 4789999999999999999765555566777889887 999999987765 999999999999999
Q ss_pred cCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCC-------CC
Q psy9598 693 KCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGH-------TN 765 (1915)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH-------~~ 765 (1915)
+...... .... ......++.++++..+.....|++|+. +.|+||++. |+.+..+..+ .+
T Consensus 1287 R~~~~e~-~~~i----------v~~~~yGs~lTal~VH~hapiiAsGs~--q~ikIy~~~-G~~l~~~k~n~~F~~q~~g 1352 (1387)
T KOG1517|consen 1287 RMSSKET-FLTI----------VAHWEYGSALTALTVHEHAPIIASGSA--QLIKIYSLS-GEQLNIIKYNPGFMGQRIG 1352 (1387)
T ss_pred ccCcccc-ccee----------eeccccCccceeeeeccCCCeeeecCc--ceEEEEecC-hhhhcccccCcccccCcCC
Confidence 8742110 0000 000111235899999999998888875 899999984 5555555433 34
Q ss_pred CeEEEEEccCCCCEEEEEecCceEEEEECCCCc
Q psy9598 766 EVFVLESHPFDSRVLLSAGHDGLIIIWDILSSK 798 (1915)
Q Consensus 766 ~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~ 798 (1915)
.+.|++||| ..-+||+|+.|.+|.||......
T Consensus 1353 s~scL~FHP-~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1353 SVSCLAFHP-HRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred Ccceeeecc-hhHhhhhccCCceEEEeecCCcC
Confidence 679999999 77788999999999999876544
|
|
| >cd05492 Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family | Back alignment and domain information |
|---|
Probab=99.69 E-value=8.3e-17 Score=159.50 Aligned_cols=96 Identities=20% Similarity=0.296 Sum_probs=85.2
Q ss_pred HHHHHHHHc-CCCCCCCCCCCC-----CCCCCCccccccCccchhhHHhhhcCCCCCCHHHHHHHHHHHHHHhhhhcCCC
Q psy9598 1538 REVLETLWV-CPDSEPFRKPVD-----KLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQNK 1611 (1915)
Q Consensus 1538 ~~ll~~l~~-~~~s~~F~~pv~-----~~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~Dv~lif~Na~~yN~~~ 1611 (1915)
.-++..+.. .+.+.||..||. ...+|+||++|++||||+||++||++|+|++++||..||.|||+||+.||+++
T Consensus 6 ~f~~~~~k~~lp~~~~~~~~v~~~~~~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~LI~~N~~~yNg~~ 85 (109)
T cd05492 6 KFIVSRMKSWLPPDTTNRAIVLNKRGKATKLPKRRRLIHTHLDVADIQEKINSEKYTSLEEFKADALLLLHNTAIFHGAD 85 (109)
T ss_pred HHHHHHHHhcCcccccccccccccCchhccCCCHHHHhCCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 345566666 566899999995 34699999999999999999999999999999999999999999999999988
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHH
Q psy9598 1612 RSKIYIMTTRLSEFAEEHLRRLT 1634 (1915)
Q Consensus 1612 ~s~i~~~a~~l~~~f~~~~~~~~ 1634 (1915)
|.+|.+|..|-+.....+.+|.
T Consensus 86 -s~~~~~A~~l~~d~~~el~Ei~ 107 (109)
T cd05492 86 -SEQYDAARWLYRDTCHDLRELR 107 (109)
T ss_pred -CHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999988888777763
|
ZMYND11 or BS69 is a ubiquitously expressed nuclear protein that has been shown to associate with chromatin. It interacts with chromatin remodeling factors and might play a role in chromatin remodeling and gene expression. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >KOG1240|consensus | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.9e-15 Score=188.40 Aligned_cols=361 Identities=11% Similarity=0.098 Sum_probs=224.6
Q ss_pred ceeeeEEecCCCCcEEEEEEcCC-CCEEEEEECCCcEEEEECCC-------CcEEEEEeCCCCCEEEEEEeCCCCEEEEE
Q psy9598 465 NLRQHYVNLGHLSAVFCVLFDKL-GEVIVTGADDLLIKLWRARD-------GKLLATLRGCSGEISDIAIDNRNILLAAG 536 (1915)
Q Consensus 465 ~~~~~~~l~gH~~~V~~vafspd-g~~LaTGs~Dg~I~IWd~~t-------g~~~~~l~gH~~~I~~Lafspdg~~LaSg 536 (1915)
.-.++.+|..|...|..++.++. +.+++|||.||+|+||++.. .+...++.-..+.+.++.+.+.+..+|.|
T Consensus 1037 ~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~ 1116 (1431)
T KOG1240|consen 1037 RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVS 1116 (1431)
T ss_pred cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEE
Confidence 34556788899999999998764 59999999999999999753 23344555457789999999999999999
Q ss_pred eCCCcEEEEECCCC--c-----eEEEeecC-CCCeE-EEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCc
Q psy9598 537 TVDKTIRIWNLQTL--A-----PISVLVGH-QGIIT-GVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEP 607 (1915)
Q Consensus 537 s~DgtIrVWDl~tg--~-----~~~~l~~h-~~~V~-sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~ 607 (1915)
+.||.|++.++... . +......+ .+.|. .-+|.... ....|+.+...+.|..||++...........
T Consensus 1117 t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~--~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~-- 1192 (1431)
T KOG1240|consen 1117 TKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIV--QSHVLVYATDLSRIVSWDTRMRHDAWRLKNQ-- 1192 (1431)
T ss_pred cCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccc--cceeEEEEEeccceEEecchhhhhHHhhhcC--
Confidence 99999999998752 1 11111122 23333 33443321 1248888999999999999887665555443
Q ss_pred cccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCC---CEEEEEe--
Q psy9598 608 VMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSH---LRFVSGS-- 682 (1915)
Q Consensus 608 ~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg---~~L~sgs-- 682 (1915)
...+.|++++.+|.++++++|+..|.+.+||++ ...+..-... ++..+|..|+.+|-. ...++++
T Consensus 1193 --------~~hG~vTSi~idp~~~WlviGts~G~l~lWDLR-F~~~i~sw~~-P~~~~i~~v~~~~~~~~~S~~vs~~~~ 1262 (1431)
T KOG1240|consen 1193 --------LRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLR-FRVPILSWEH-PARAPIRHVWLCPTYPQESVSVSAGSS 1262 (1431)
T ss_pred --------ccccceeEEEecCCceEEEEecCCceEEEEEee-cCceeecccC-cccCCcceEEeeccCCCCceEEEeccc
Confidence 334889999999999999999999999999994 2222222222 344677777776543 3444444
Q ss_pred CCCcEEEEEccCCceEEeeecccccCC-CCcccc--ccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceE-E
Q psy9598 683 RDGTALIWYYKCSQWRFIRLDMNTCLP-HTKETS--DETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLV-Q 758 (1915)
Q Consensus 683 ~DG~I~IWDl~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i-~ 758 (1915)
..+.|.+|++.++.+............ ...... ....+.......++.-.+.++++|++ |..|+.||....... .
T Consensus 1263 ~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggs-d~kIR~wD~~~p~~ss~ 1341 (1431)
T KOG1240|consen 1263 SNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGS-DMKIRKWDPTRPEISSY 1341 (1431)
T ss_pred CCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCC-ccceeeccCCCcccccc
Confidence 578899999999976655433211100 000000 01122233344455556678888888 999999998764433 2
Q ss_pred EeeCCCCCeEEEEEccCCCCEEEEEecCceEE-EEECCCCc------cccceeeeeeecCCCCcceEEEEEcCC-CCEEE
Q psy9598 759 VLKGHTNEVFVLESHPFDSRVLLSAGHDGLII-IWDILSSK------QRGYKWFHNIVEGQGEGALFDGKWSPD-GTTCA 830 (1915)
Q Consensus 759 ~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~-IWdl~s~~------~~~~~~~~~~~~~~~~~~V~~vafSpd-g~~La 830 (1915)
...|..........+. +.-++.|+.--... +.....+- ...+..........|+.+|+++++... ..+|+
T Consensus 1342 ~~~~~s~~~~~~~~s~--~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llv 1419 (1431)
T KOG1240|consen 1342 AVPGPSTSYSTNSESY--DLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLV 1419 (1431)
T ss_pred cccCccccccccchhc--cccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEE
Confidence 2223222222222221 12222222110000 01111000 000122222334567789999988653 56899
Q ss_pred EEeCCCeEEEEe
Q psy9598 831 LTDSYGHLLVYG 842 (1915)
Q Consensus 831 sg~~dG~I~Iwd 842 (1915)
+++.||.|.||.
T Consensus 1420 s~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1420 SSSRDGVIKIWK 1431 (1431)
T ss_pred EecCCCeeeecC
Confidence 999999999993
|
|
| >KOG1832|consensus | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.5e-17 Score=199.24 Aligned_cols=394 Identities=12% Similarity=0.095 Sum_probs=263.9
Q ss_pred HhhcccccHHHHHHHHHHhccCChHHHHHHHHHHHHhcC-----------cCcccccccCccccccHHHHHhcCCCCCCC
Q psy9598 299 TERLTRLDQELMLLIIKYLEKGPCHEAAKVLTDLVEAKN-----------LLPERYDWEGATHSQTLAEVASSHPNVTAS 367 (1915)
Q Consensus 299 ~~~i~~l~~e~~~li~~~L~~~~~~~aa~~L~~e~~~~~-----------llp~r~~~~g~~~~~~~~~l~~~~~~i~~~ 367 (1915)
+..++.-..|+|.+|..+|...++...|.+|.+|..... .+.......|...++++..+..+++..++-
T Consensus 848 ~aq~sfp~~elL~li~~HL~ss~L~~~a~vl~~ea~LP~~~As~~s~fTP~~~~~~p~S~~~~p~~~~~In~~~~s~~a~ 927 (1516)
T KOG1832|consen 848 LAQESFPSNELLSLIKKHLASSTLEMPAPVLQQEAPLPKINASKQSTFTPSFSSKQPFSHDALPQSTQRINCCSNSDPAL 927 (1516)
T ss_pred hhhccCCHHHHHHHHHHHHhhcccCCchhhhhccCCCCCcccccccccCccccCCCCCCCCccchhhhhhhccCCCchhh
Confidence 334566668999999999999999999999999983210 011112234444555665555444421000
Q ss_pred hH-----------------------------H---------------------------HHHHHhC-----CCcccccCC
Q psy9598 368 FL-----------------------------P---------------------------KICQRLG-----PLLDKELKP 386 (1915)
Q Consensus 368 ~L-----------------------------~---------------------------~l~~~l~-----pll~~~~~~ 386 (1915)
.+ . .--+.++ +-...+.++
T Consensus 928 ~~~Se~~a~~a~~~~~~a~~q~p~~~~~p~~~~~s~l~~~~~p~rer~s~~f~~k~~l~~~~s~l~a~~~g~s~~gq~~~ 1007 (1516)
T KOG1832|consen 928 ADTSETAAELALKNDLDADAQFPTPISFPRKRKLSELRDSSVPGRERRSSTFADKSGLQTPASALDANQSGSSRLGQMTP 1007 (1516)
T ss_pred cccccccchhccCCCCCccccCCCCCCCCcccCCccccCcccccccccCCCCcccccccChhhhcCCCCCCccccccCCC
Confidence 00 0 0001111 111123345
Q ss_pred CCCCcceecccCccccccchhhhccccccchhHHHhc-CCCcccccCccCccchhhcccCccccc---cCCCeEEEeccc
Q psy9598 387 NFPGLKSLLSGGSQSLLRSEKSLAKSVLSSYDYIARQ-HGTSLLVPNSVKVHNTVNVLRSREYSG---PLSRSLMISSHK 462 (1915)
Q Consensus 387 ~~~~~~tll~~g~~sll~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~v~~l~~r~~tg---~~d~~~~i~~~~ 462 (1915)
..|...+|-+...+++..+|..|..||.+++.+.+++ |.||-+......+.|+...+..|++.. +.++.-.-....
T Consensus 1008 ~~p~~~sLdSIVt~Ylr~QH~~CknPVtTcPPfSLf~pH~CPEpk~~~~ap~N~t~Rl~~rel~~~y~gV~g~~~dr~~I 1087 (1516)
T KOG1832|consen 1008 ANPERLSLDSIVTQYLRHQHRQCKNPVTTCPPFSLFHPHVCPEPKRLLEAPLNMTGRLGTRELQSFYSGVHGNRRDRQFI 1087 (1516)
T ss_pred cCCCCCcHHHHHHHHHHHHHHhhcCCcccCCChhhcCCccCCChHHHhhcchhhhhcccchhhcCcccccccCcccchhh
Confidence 5566778888888999999999999999999999887 666655444555666665555555432 222222222345
Q ss_pred CCceeeeEEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCC--
Q psy9598 463 YSNLRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDK-- 540 (1915)
Q Consensus 463 ~~~~~~~~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~Dg-- 540 (1915)
++.++.+++|..|+...+|++|+-+.++|+.|+..|.|++|++.+|.......+|.+.|+.|.-+.+|.++++.+.-.
T Consensus 1088 FSRFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~P 1167 (1516)
T KOG1832|consen 1088 FSRFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSP 1167 (1516)
T ss_pred HhhcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCc
Confidence 677888889999999999999999999999999999999999999999999999999999999999998877665433
Q ss_pred cEEEEECCC-CceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCC
Q psy9598 541 TIRIWNLQT-LAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNA 619 (1915)
Q Consensus 541 tIrVWDl~t-g~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (1915)
...+|++.+ +.+.+++.+ -.++.|+... ..-+.|+....+.+||+.++..+.++.... .+...
T Consensus 1168 lsaLW~~~s~~~~~Hsf~e----d~~vkFsn~~----q~r~~gt~~d~a~~YDvqT~~~l~tylt~~--------~~~~y 1231 (1516)
T KOG1832|consen 1168 LSALWDASSTGGPRHSFDE----DKAVKFSNSL----QFRALGTEADDALLYDVQTCSPLQTYLTDT--------VTSSY 1231 (1516)
T ss_pred hHHHhccccccCccccccc----cceeehhhhH----HHHHhcccccceEEEecccCcHHHHhcCcc--------hhhhh
Confidence 578999864 556666653 3578888643 333444444568899999987655432221 01112
Q ss_pred ceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEE
Q psy9598 620 HILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRF 699 (1915)
Q Consensus 620 ~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~ 699 (1915)
.-+++.|+|+..+|+-- | .+||++. +..++.+...+..+.+ .|+|+|..++..+. |||+++....+
T Consensus 1232 ~~n~a~FsP~D~LIlnd---G--vLWDvR~---~~aIh~FD~ft~~~~G-~FHP~g~eVIINSE-----IwD~RTF~lLh 1297 (1516)
T KOG1832|consen 1232 SNNLAHFSPCDTLILND---G--VLWDVRI---PEAIHRFDQFTDYGGG-GFHPSGNEVIINSE-----IWDMRTFKLLH 1297 (1516)
T ss_pred hccccccCCCcceEeeC---c--eeeeecc---HHHHhhhhhheecccc-cccCCCceEEeech-----hhhhHHHHHHh
Confidence 23788999999877643 3 2899953 3445555444433333 39999999999877 99999877443
Q ss_pred eeecccccCCCCccccccccccccEEEEEECCCCCEEEEEE
Q psy9598 700 IRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAI 740 (1915)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s 740 (1915)
... ...-+.|.|+..|..+++.-
T Consensus 1298 ~VP------------------~Ldqc~VtFNstG~VmYa~~ 1320 (1516)
T KOG1832|consen 1298 SVP------------------SLDQCAVTFNSTGDVMYAML 1320 (1516)
T ss_pred cCc------------------cccceEEEeccCccchhhhh
Confidence 221 12234577888887766543
|
|
| >KOG1334|consensus | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.5e-16 Score=182.44 Aligned_cols=315 Identities=16% Similarity=0.192 Sum_probs=235.8
Q ss_pred cEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEe-ecCCCCeEEEEeccCccCCCcEEEEEeCCCe
Q psy9598 509 KLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVL-VGHQGIITGVNFCPLEVNGFNYLASTSTDGC 587 (1915)
Q Consensus 509 ~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l-~~h~~~V~sl~fsp~~~~d~~~L~sgs~Dgt 587 (1915)
.+...|.+|.+.|+.|.|+..|..|+|||.|..|.+||+.++.++..+ .||...|....|.|.. +...|++++.||.
T Consensus 133 ~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s--~d~ti~~~s~dgq 210 (559)
T KOG1334|consen 133 RLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFS--GDRTIVTSSRDGQ 210 (559)
T ss_pred hhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCC--CCcCceeccccCc
Confidence 455678899999999999999999999999999999999998887766 4799999999999976 6789999999999
Q ss_pred EEEEecccCccccceeccCccccccccCCCCCceEEEEECCCC-cEEEEEeCCCeEEEEEecCCCCCceeEEeccCCC--
Q psy9598 588 IGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGG-LFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSD-- 664 (1915)
Q Consensus 588 I~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg-~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~-- 664 (1915)
|++=.+...... .....+..|.+.|.-++.-|+. .-|.+++.|+.+.-+|++.......+..-..+..
T Consensus 211 vr~s~i~~t~~~---------e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~ 281 (559)
T KOG1334|consen 211 VRVSEILETGYV---------ENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKER 281 (559)
T ss_pred eeeeeeccccce---------ecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccc
Confidence 998665433221 1123445778999999999975 4588999999999999965433333333333444
Q ss_pred -CeeEEEEcCCCC-EEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEec
Q psy9598 665 -KVDSIQWSHSHL-RFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINF 742 (1915)
Q Consensus 665 -~V~sl~fspdg~-~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~ 742 (1915)
...+|+..|... .|++|+.|..+++||.+.-......-......+. .........|++++|+.++.-|+++.+
T Consensus 282 v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~----hl~~d~~v~ITgl~Ysh~~sElLaSYn- 356 (559)
T KOG1334|consen 282 VGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPH----HLVEDDPVNITGLVYSHDGSELLASYN- 356 (559)
T ss_pred eeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCc----cccccCcccceeEEecCCccceeeeec-
Confidence 567888888765 8999999999999998764422111000111111 112245677999999999888888888
Q ss_pred CCeEEEEECCC--C----------ceEEE-eeCCCC--CeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeee
Q psy9598 743 NFQIKIWDAFN--G----------DLVQV-LKGHTN--EVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHN 807 (1915)
Q Consensus 743 Dg~I~vwD~~t--g----------~~i~~-l~gH~~--~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~ 807 (1915)
|-.|+++.-.- | ..+.. ++||.+ .|.++-|-.....++++|+.=|.|.||+-.+++. +..+.
T Consensus 357 De~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~ei--i~~Me- 433 (559)
T KOG1334|consen 357 DEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEI--IRFME- 433 (559)
T ss_pred ccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHH--HHHhh-
Confidence 88999996432 2 23333 789965 4666665422788999999999999999999887 55443
Q ss_pred eecCCCCcceEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q psy9598 808 IVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGGF 846 (1915)
Q Consensus 808 ~~~~~~~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl~s~ 846 (1915)
+.. ..|.|+.=+|--..||+++-|..|+||.-.+.
T Consensus 434 ---gDr-~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~ 468 (559)
T KOG1334|consen 434 ---GDR-HVVNCLEPHPHLPVLASSGIDHDVKIWTPLTA 468 (559)
T ss_pred ---ccc-ceEeccCCCCCCchhhccCCccceeeecCCcc
Confidence 333 38999999999999999999999999986543
|
|
| >KOG1334|consensus | Back alignment and domain information |
|---|
Probab=99.68 E-value=2e-16 Score=184.45 Aligned_cols=321 Identities=19% Similarity=0.289 Sum_probs=236.3
Q ss_pred CCceeeeEEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEE-eCCCCCEEEEEEeC--CCCEEEEEeCC
Q psy9598 463 YSNLRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATL-RGCSGEISDIAIDN--RNILLAAGTVD 539 (1915)
Q Consensus 463 ~~~~~~~~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l-~gH~~~I~~Lafsp--dg~~LaSgs~D 539 (1915)
...+.+...|.+|.+.|..|.|...|..|++||.|..|.+||+.++.....+ .||...|..-.|-| +...|++++.|
T Consensus 129 vqr~~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~d 208 (559)
T KOG1334|consen 129 VQRLRLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRD 208 (559)
T ss_pred HHHhhhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceecccc
Confidence 3456666789999999999999999999999999999999999999887776 58999999888877 35689999999
Q ss_pred CcEEEEECC-CCce--EEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCC
Q psy9598 540 KTIRIWNLQ-TLAP--ISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRP 616 (1915)
Q Consensus 540 gtIrVWDl~-tg~~--~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~ 616 (1915)
|.|++=.+. ++.+ ...+..|.+.|.-++.-|.. ...|++++.|+.+.-+|++.+.....+.... .-..
T Consensus 209 gqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~s---p~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~------~~~~ 279 (559)
T KOG1334|consen 209 GQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDS---PKPFLSCGEDAVVFHIDLRQDVPAEKFVCRE------ADEK 279 (559)
T ss_pred CceeeeeeccccceecceecccccCccceeeecCCC---CCcccccccccceeeeeeccCCccceeeeec------cCCc
Confidence 999998764 3333 34566799999999998865 4889999999999999998875443333110 0001
Q ss_pred CCCceEEEEECCCCc-EEEEEeCCCeEEEEEecCCCCC---ceeEEec------cCCCCeeEEEEcCCCCEEEEEeCCCc
Q psy9598 617 GNAHILCSSFSPGGL-FLATGSGDHHVRVYKMDGVDSP---LGILEVE------EHSDKVDSIQWSHSHLRFVSGSRDGT 686 (1915)
Q Consensus 617 ~~~~V~~l~fspdg~-~Lasgs~Dg~I~IwDl~~~~~~---~~i~~l~------~h~~~V~sl~fspdg~~L~sgs~DG~ 686 (1915)
.....+.++..|... .+++|+.|..+++||.+..... ..+..+. ...-.|++++|++++.-|+++..|-.
T Consensus 280 ~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~ 359 (559)
T KOG1334|consen 280 ERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDED 359 (559)
T ss_pred cceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccc
Confidence 123578889999654 8999999999999998532211 1111111 23346999999999888888889999
Q ss_pred EEEEEccCCceEEeeecccccCCCCc-ccccccccc--ccEEEEEE-CCCCCEEEEEEecCCeEEEEECCCCceEEEeeC
Q psy9598 687 ALIWYYKCSQWRFIRLDMNTCLPHTK-ETSDETNKK--IKVTMVAW-DASDRWVITAINFNFQIKIWDAFNGDLVQVLKG 762 (1915)
Q Consensus 687 I~IWDl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~V~~va~-spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~g 762 (1915)
|+++.-..+.-. ......+... ......+|. ..|..+-| -|...|+++|+. -|.|.||+-.++++|..+.|
T Consensus 360 IYLF~~~~~~G~----~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSD-CGhIFiW~K~t~eii~~Meg 434 (559)
T KOG1334|consen 360 IYLFNKSMGDGS----EPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSD-CGHIFIWDKKTGEIIRFMEG 434 (559)
T ss_pred eEEeccccccCC----CCCCCcchhhccchhhcccccccccceeeeccCccceEEecCc-cceEEEEecchhHHHHHhhc
Confidence 999843222100 0000000000 011122332 33555554 578889999888 99999999999999999998
Q ss_pred CCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCc
Q psy9598 763 HTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSK 798 (1915)
Q Consensus 763 H~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~ 798 (1915)
....|+||.-|| --.+|||.|-|..|+||.-.+..
T Consensus 435 Dr~VVNCLEpHP-~~PvLAsSGid~DVKIWTP~~~e 469 (559)
T KOG1334|consen 435 DRHVVNCLEPHP-HLPVLASSGIDHDVKIWTPLTAE 469 (559)
T ss_pred ccceEeccCCCC-CCchhhccCCccceeeecCCccc
Confidence 888999999999 66789999999999999875443
|
|
| >KOG1007|consensus | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.5e-15 Score=162.31 Aligned_cols=279 Identities=20% Similarity=0.263 Sum_probs=199.9
Q ss_pred CCCEEEEEEC----CCcEEEEECCCCc---EEEEEeCCCCCEEEEEEeCCC-CEEEEEeCC-------CcEEEEECCC--
Q psy9598 487 LGEVIVTGAD----DLLIKLWRARDGK---LLATLRGCSGEISDIAIDNRN-ILLAAGTVD-------KTIRIWNLQT-- 549 (1915)
Q Consensus 487 dg~~LaTGs~----Dg~I~IWd~~tg~---~~~~l~gH~~~I~~Lafspdg-~~LaSgs~D-------gtIrVWDl~t-- 549 (1915)
+.-.+++|+. |+.|.+..+..+. ....|..|.+.|..|+-+|-. ++|+++..+ ..+.||.+..
T Consensus 25 d~icFlvgTnslK~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~ 104 (370)
T KOG1007|consen 25 DHICFLVGTNSLKEDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPL 104 (370)
T ss_pred cceEEEEeccccCCcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEeccccc
Confidence 3344555543 5778777766543 234677889999999999954 566665442 2478998853
Q ss_pred -------CceEEEee-cCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccc-cceeccCccccccccCCCCCc
Q psy9598 550 -------LAPISVLV-GHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDI-SKTVFHEPVMFNERIRPGNAH 620 (1915)
Q Consensus 550 -------g~~~~~l~-~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 620 (1915)
..++..+. .+-+.|.||.|.|++ ..|++-. |..|.+|++..+..+ ..+.... ...+...
T Consensus 105 ~~S~~~tlE~v~~Ldteavg~i~cvew~Pns----~klasm~-dn~i~l~~l~ess~~vaev~ss~-------s~e~~~~ 172 (370)
T KOG1007|consen 105 GQSNSSTLECVASLDTEAVGKINCVEWEPNS----DKLASMD-DNNIVLWSLDESSKIVAEVLSSE-------SAEMRHS 172 (370)
T ss_pred CccccchhhHhhcCCHHHhCceeeEEEcCCC----CeeEEec-cCceEEEEcccCcchheeecccc-------cccccce
Confidence 33445554 466799999999943 6777666 788999999887652 1111111 1123456
Q ss_pred eEEEEECC--CCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCC-EEEEEeCCCcEEEEEccCCce
Q psy9598 621 ILCSSFSP--GGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHL-RFVSGSRDGTALIWYYKCSQW 697 (1915)
Q Consensus 621 V~~l~fsp--dg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~-~L~sgs~DG~I~IWDl~~~~~ 697 (1915)
.++-+|+| +|+.+++. .|+++..||+++......+ -.+|...|..+.|+|+.. +|++|+.||.|+|||.+..+
T Consensus 173 ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI--~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk- 248 (370)
T KOG1007|consen 173 FTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSI--EDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTK- 248 (370)
T ss_pred ecccccCCCCccceEEEe-CCCcEEEEEccchhhhcch--hhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCC-
Confidence 77889998 67666664 6789999999754433333 357888999999999876 68899999999999988654
Q ss_pred EEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCC-----------------------
Q psy9598 698 RFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNG----------------------- 754 (1915)
Q Consensus 698 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg----------------------- 754 (1915)
.......+|...|++|.|+|....|+.+++.|..|.+|...+-
T Consensus 249 --------------~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer 314 (370)
T KOG1007|consen 249 --------------FPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEER 314 (370)
T ss_pred --------------ccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHh
Confidence 2234566799999999999986555544444999999975321
Q ss_pred ------ceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECC
Q psy9598 755 ------DLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDIL 795 (1915)
Q Consensus 755 ------~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~ 795 (1915)
..+.++..|...|++++|+..+.-+||+-+.||.|.|=.+.
T Consensus 315 ~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 315 VKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred cccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 13456778999999999999888999999999999986653
|
|
| >cd05526 Bromo_polybromo_VI Bromodomain, polybromo repeat VI | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.2e-16 Score=155.47 Aligned_cols=99 Identities=17% Similarity=0.192 Sum_probs=90.4
Q ss_pred hHHHHHHHHHHHHhcCCC------CCCCCCCCCCCCCCCccccCCCcCCHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHh
Q psy9598 117 NWKNECREVLETLWVCPD------SEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSR 190 (1915)
Q Consensus 117 ~~~~~~~~il~~l~~~~~------~~~F~~pvd~~~~pdY~~iIk~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~Lif~N~~ 190 (1915)
.++..+..|+..|++|.+ |.||.+.+. ..|+||.+|++||||.+|++||++|.|.++++|.+||.|||.||+
T Consensus 3 ~vq~~l~~l~~~V~~~~D~~Gr~~s~~f~~LP~--~~~~~~~~ik~Pi~l~~Ik~ki~~~~Y~~ld~~~~D~~lmf~NAr 80 (110)
T cd05526 3 LVQELLATLFVSVMNHQDEEGRCYSDSLAELPE--LAVDGVGPKKIPLTLDIIKRNVDKGRYRRLDKFQEDMFEVLERAR 80 (110)
T ss_pred HHHHHHHHHHHHHHhccCCCCCCchHHHHHCCC--cccCchhhhcCCccHHHHHHHHHcCCcCcHHHHHHHHHHHHHHHH
Confidence 456778899999999875 789999988 447888999999999999999999999999999999999999999
Q ss_pred hhcCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy9598 191 NYNQNKRSKIYIMTTRLSEFAEEHLRRL 218 (1915)
Q Consensus 191 ~yN~~~~s~i~~~a~~l~~~f~~~~~~~ 218 (1915)
+||.++ |.||.+|..|+++|.+...++
T Consensus 81 ~yN~~~-S~iy~dA~eLq~~f~~~rd~~ 107 (110)
T cd05526 81 RLSRTD-SEIYEDAVELQQFFIKIRDEL 107 (110)
T ss_pred HhCccc-CHHHHHHHHHHHHHHHHHHHH
Confidence 999977 999999999999999887765
|
Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine. |
| >KOG1007|consensus | Back alignment and domain information |
|---|
Probab=99.67 E-value=9.2e-15 Score=160.59 Aligned_cols=292 Identities=18% Similarity=0.280 Sum_probs=202.2
Q ss_pred CEEEEEe----CCCcEEEEECCCCce---EEEeecCCCCeEEEEeccCccCCCcEEEEEeCC-------CeEEEEecccC
Q psy9598 531 ILLAAGT----VDKTIRIWNLQTLAP---ISVLVGHQGIITGVNFCPLEVNGFNYLASTSTD-------GCIGFWKYKLD 596 (1915)
Q Consensus 531 ~~LaSgs----~DgtIrVWDl~tg~~---~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~D-------gtI~iWDl~~~ 596 (1915)
-.+++|. .|+.|.+.++..+.. ..+|..|.+.|+.|+-+|. +..+|+++..+ ..+.||.+...
T Consensus 27 icFlvgTnslK~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~---d~~ilaT~yn~~s~s~vl~~aaiw~ipe~ 103 (370)
T KOG1007|consen 27 ICFLVGTNSLKEDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPF---DQRILATVYNDTSDSGVLTGAAIWQIPEP 103 (370)
T ss_pred eEEEEeccccCCcceeEEEEecCccchhhhhhhhcCCcceehhhcCCC---CCceEEEEEeccCCCcceeeEEEEecccc
Confidence 3444454 367788877765332 2356678899999999995 44677776542 24678987654
Q ss_pred ccccceeccCccccccccC-CCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeE---EeccCCCCeeEEEEc
Q psy9598 597 IDISKTVFHEPVMFNERIR-PGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGIL---EVEEHSDKVDSIQWS 672 (1915)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~-~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~---~l~~h~~~V~sl~fs 672 (1915)
...... .+......+. .+-+.|.|+.|.|++..|++-. |..|.+|++.......... .-.+|....++-+|+
T Consensus 104 ~~~S~~---~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~Ws 179 (370)
T KOG1007|consen 104 LGQSNS---STLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWS 179 (370)
T ss_pred cCcccc---chhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccC
Confidence 322111 1111111121 2346899999999999888875 7899999996544321111 112356677888898
Q ss_pred C--CCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEE
Q psy9598 673 H--SHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWD 750 (1915)
Q Consensus 673 p--dg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD 750 (1915)
| +|+.+++ ..|+++..||+++..+.. .....|...|..+.|+|+-.+++++++.||.|+|||
T Consensus 180 pHHdgnqv~t-t~d~tl~~~D~RT~~~~~---------------sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD 243 (370)
T KOG1007|consen 180 PHHDGNQVAT-TSDSTLQFWDLRTMKKNN---------------SIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWD 243 (370)
T ss_pred CCCccceEEE-eCCCcEEEEEccchhhhc---------------chhhhhcceeeeccCCCCceEEEEEcCCCccEEEEe
Confidence 7 5666665 468999999999776332 123457788999999999888777666699999999
Q ss_pred CCC-CceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccc-------------------cceeeee-e-
Q psy9598 751 AFN-GDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQR-------------------GYKWFHN-I- 808 (1915)
Q Consensus 751 ~~t-g~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~-------------------~~~~~~~-~- 808 (1915)
.+. ..++..+.+|...|++|.|+|....+|+|||.|..|.+|...+-... ....+.. .
T Consensus 244 ~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l 323 (370)
T KOG1007|consen 244 TRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQL 323 (370)
T ss_pred ccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhccccccccc
Confidence 985 56899999999999999999988899999999999999976442210 0000100 0
Q ss_pred -ecCCCCcceEEEEEcC-CCCEEEEEeCCCeEEEEeCCC
Q psy9598 809 -VEGQGEGALFDGKWSP-DGTTCALTDSYGHLLVYGLGG 845 (1915)
Q Consensus 809 -~~~~~~~~V~~vafSp-dg~~Lasg~~dG~I~Iwdl~s 845 (1915)
.-..|...|++++||. |.-.||+-+.||.+.|=.+..
T Consensus 324 ~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 324 ETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVPR 362 (370)
T ss_pred ccccccccceEEEeeccCCCeeEEEeccCceEEeecCCh
Confidence 1124567899999987 666788899999998876654
|
|
| >KOG1517|consensus | Back alignment and domain information |
|---|
Probab=99.67 E-value=6.4e-15 Score=184.28 Aligned_cols=304 Identities=13% Similarity=0.141 Sum_probs=209.6
Q ss_pred CEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCC---CCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccC
Q psy9598 520 EISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQ---GIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLD 596 (1915)
Q Consensus 520 ~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~---~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~ 596 (1915)
.-..+.|+|=...++++...-.|+|||.+.++.+..|..+. ..|+.+.+.... +..+|++|+.||.|+||+--..
T Consensus 1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~--D~aLlLtas~dGvIRIwk~y~~ 1143 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQ--DDALLLTASSDGVIRIWKDYAD 1143 (1387)
T ss_pred CCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeeccc--chhheeeeccCceEEEeccccc
Confidence 34567788877789988877899999999999887776543 578899887753 6789999999999999964322
Q ss_pred c-cccceecc-CccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEe-ccCCCCeeEEEEc-
Q psy9598 597 I-DISKTVFH-EPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEV-EEHSDKVDSIQWS- 672 (1915)
Q Consensus 597 ~-~~~~~~~~-~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l-~~h~~~V~sl~fs- 672 (1915)
. ....+... ... .....+..+.-.-+.|.....+|+++|.-..|+|||+.. ...+..+ .+....|+++.-+
T Consensus 1144 ~~~~~eLVTaw~~L--s~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~---E~~~~diP~~s~t~vTaLS~~~ 1218 (1387)
T KOG1517|consen 1144 KWKKPELVTAWSSL--SDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHK---EQVVADIPYGSSTLVTALSADL 1218 (1387)
T ss_pred ccCCceeEEeeccc--cccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEeccc---ceeEeecccCCCccceeecccc
Confidence 1 11111110 000 011111111124467777666777777788999999943 2223322 2344567776643
Q ss_pred CCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCcccccccccccc--EEEEEECCCCCE-EEEEEecCCeEEEE
Q psy9598 673 HSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIK--VTMVAWDASDRW-VITAINFNFQIKIW 749 (1915)
Q Consensus 673 pdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--V~~va~spdg~~-L~t~s~~Dg~I~vw 749 (1915)
+.|+.|++|..||.|++||.+..... ........|... |..+.+.+.|-. |++|+. +|.|++|
T Consensus 1219 ~~gn~i~AGfaDGsvRvyD~R~a~~d-------------s~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~-~G~I~~~ 1284 (1387)
T KOG1517|consen 1219 VHGNIIAAGFADGSVRVYDRRMAPPD-------------SLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQ-DGDIQLL 1284 (1387)
T ss_pred cCCceEEEeecCCceEEeecccCCcc-------------ccceeecccCCcccceeEEeecCCCcceeeecc-CCeEEEE
Confidence 34789999999999999998865411 111222334444 889999987765 888887 9999999
Q ss_pred ECCCCceEE--EeeCCC--C-CeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcC
Q psy9598 750 DAFNGDLVQ--VLKGHT--N-EVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSP 824 (1915)
Q Consensus 750 D~~tg~~i~--~l~gH~--~-~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSp 824 (1915)
|++...... ++..|. + .++++.+|+ ...++|+|+. +.|.||++.......++ ....+-++..+.+.|++|+|
T Consensus 1285 DlR~~~~e~~~~iv~~~~yGs~lTal~VH~-hapiiAsGs~-q~ikIy~~~G~~l~~~k-~n~~F~~q~~gs~scL~FHP 1361 (1387)
T KOG1517|consen 1285 DLRMSSKETFLTIVAHWEYGSALTALTVHE-HAPIIASGSA-QLIKIYSLSGEQLNIIK-YNPGFMGQRIGSVSCLAFHP 1361 (1387)
T ss_pred ecccCcccccceeeeccccCccceeeeecc-CCCeeeecCc-ceEEEEecChhhhcccc-cCcccccCcCCCcceeeecc
Confidence 998743222 233443 3 589999999 8899999998 99999999765542222 22334456668899999999
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCc
Q psy9598 825 DGTTCALTDSYGHLLVYGLGGFK 847 (1915)
Q Consensus 825 dg~~Lasg~~dG~I~Iwdl~s~~ 847 (1915)
-.-+||+|..|..|.||......
T Consensus 1362 ~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1362 HRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred hhHhhhhccCCceEEEeecCCcC
Confidence 99999999999999999876543
|
|
| >KOG1310|consensus | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.5e-16 Score=180.74 Aligned_cols=255 Identities=19% Similarity=0.279 Sum_probs=178.4
Q ss_pred CceeeeEEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEE-eCCCCCEEEEEEeC--CCCEEEEEeCCC
Q psy9598 464 SNLRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATL-RGCSGEISDIAIDN--RNILLAAGTVDK 540 (1915)
Q Consensus 464 ~~~~~~~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l-~gH~~~I~~Lafsp--dg~~LaSgs~Dg 540 (1915)
..+.+...|.||++.|+|+.|+.+|.+|++||+|-.|.|||....++++.+ .||.+.|.|+.|-| ++.+++||+.|.
T Consensus 38 rrL~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk 117 (758)
T KOG1310|consen 38 RRLDLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDK 117 (758)
T ss_pred hhcchhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcc
Confidence 345666789999999999999999999999999999999999998988877 59999999999988 467899999999
Q ss_pred cEEEEECCC----------CceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCcccc
Q psy9598 541 TIRIWNLQT----------LAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMF 610 (1915)
Q Consensus 541 tIrVWDl~t----------g~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~ 610 (1915)
.|+|+|+.. ...++.+..|...|.-|+..|.+ .+.+.+++.||+|+-+|++.......-. ..+..
T Consensus 118 ~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~---PhtfwsasEDGtirQyDiREph~c~p~~-~~~~~- 192 (758)
T KOG1310|consen 118 LIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNG---PHTFWSASEDGTIRQYDIREPHVCNPDE-DCPSI- 192 (758)
T ss_pred eEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCC---CceEEEecCCcceeeecccCCccCCccc-cccHH-
Confidence 999999974 23455677899999999999854 3899999999999999998753221111 00000
Q ss_pred ccccCCCCCceEEEEECCC-CcEEEEEeCCCeEEEEEecCCCCCceeE-E-eccCCCCeeEEE-EcCCCCEEEEEeCCCc
Q psy9598 611 NERIRPGNAHILCSSFSPG-GLFLATGSGDHHVRVYKMDGVDSPLGIL-E-VEEHSDKVDSIQ-WSHSHLRFVSGSRDGT 686 (1915)
Q Consensus 611 ~~~~~~~~~~V~~l~fspd-g~~Lasgs~Dg~I~IwDl~~~~~~~~i~-~-l~~h~~~V~sl~-fspdg~~L~sgs~DG~ 686 (1915)
.....+.--...|+.++|. ..+|++|+.|-..++||.+.......-. . .........|+. |+|.+. ...+|.
T Consensus 193 l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hl----kn~~gn 268 (758)
T KOG1310|consen 193 LVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHL----KNSQGN 268 (758)
T ss_pred HHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccc----cCcccc
Confidence 0111122245789999996 4689999999999999963211100000 0 000011122222 233321 111221
Q ss_pred EEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEE
Q psy9598 687 ALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQ 758 (1915)
Q Consensus 687 I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~ 758 (1915)
+.. ....++-++|+|+|.-|++.-+ .-.|+++|+..++...
T Consensus 269 ~~~------------------------------~~~~~t~vtfnpNGtElLvs~~-gEhVYlfdvn~~~~~~ 309 (758)
T KOG1310|consen 269 LDR------------------------------YITCCTYVTFNPNGTELLVSWG-GEHVYLFDVNEDKSPT 309 (758)
T ss_pred ccc------------------------------ceeeeEEEEECCCCcEEEEeeC-CeEEEEEeecCCCCce
Confidence 111 1224677899999999888877 6789999987765443
|
|
| >KOG0649|consensus | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.9e-14 Score=153.18 Aligned_cols=287 Identities=15% Similarity=0.197 Sum_probs=195.1
Q ss_pred CEEEEEEeCCCCEEEEEeCCCcEEEEECCC---------C-ceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEE
Q psy9598 520 EISDIAIDNRNILLAAGTVDKTIRIWNLQT---------L-APISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIG 589 (1915)
Q Consensus 520 ~I~~Lafspdg~~LaSgs~DgtIrVWDl~t---------g-~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~ 589 (1915)
.|.+-+|+|.+++|++|+.+|+|.|..+.+ | ..+...++|.++|+.++|.. .+|++|+. |.|+
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d------~~Lls~gd-G~V~ 84 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD------DFLLSGGD-GLVY 84 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh------hheeeccC-ceEE
Confidence 456678999999999999999999999864 2 24556689999999999985 56777665 9999
Q ss_pred EEecccCccccce----eccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCC
Q psy9598 590 FWKYKLDIDISKT----VFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDK 665 (1915)
Q Consensus 590 iWDl~~~~~~~~~----~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~ 665 (1915)
-|.++........ ....|.... ...--.|+++.+.|..+-|+.++.|+.++-||+ ........+.+|++.
T Consensus 85 gw~W~E~~es~~~K~lwe~~~P~~~~---~~evPeINam~ldP~enSi~~AgGD~~~y~~dl---E~G~i~r~~rGHtDY 158 (325)
T KOG0649|consen 85 GWEWNEEEESLATKRLWEVKIPMQVD---AVEVPEINAMWLDPSENSILFAGGDGVIYQVDL---EDGRIQREYRGHTDY 158 (325)
T ss_pred EeeehhhhhhccchhhhhhcCccccC---cccCCccceeEeccCCCcEEEecCCeEEEEEEe---cCCEEEEEEcCCcce
Confidence 9987654321000 000111100 111245889999998888888889999999999 455667789999999
Q ss_pred eeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCe
Q psy9598 666 VDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQ 745 (1915)
Q Consensus 666 V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~ 745 (1915)
|.++.--.....+++|+.||+++|||+++++++...-... ............|.+++. +..++++|++ ..
T Consensus 159 vH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk------~~~~lRp~~g~wigala~--~edWlvCGgG--p~ 228 (325)
T KOG0649|consen 159 VHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYK------NPNLLRPDWGKWIGALAV--NEDWLVCGGG--PK 228 (325)
T ss_pred eeeeeecccCcceeecCCCccEEEEeccccceeEEecccc------ChhhcCcccCceeEEEec--cCceEEecCC--Cc
Confidence 9999985556679999999999999999998766432111 011111123345666654 5678888764 68
Q ss_pred EEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCC
Q psy9598 746 IKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPD 825 (1915)
Q Consensus 746 I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpd 825 (1915)
+.+|++++.++..+|.- ...|..+.|-. ..++++|....|.-|.+.. .. ...+.. .+...++..|+..
T Consensus 229 lslwhLrsse~t~vfpi-pa~v~~v~F~~---d~vl~~G~g~~v~~~~l~G-vl------~a~ip~-~s~~c~s~s~~~~ 296 (325)
T KOG0649|consen 229 LSLWHLRSSESTCVFPI-PARVHLVDFVD---DCVLIGGEGNHVQSYTLNG-VL------QANIPV-ESTACYSASWQTS 296 (325)
T ss_pred eeEEeccCCCceEEEec-ccceeEeeeec---ceEEEeccccceeeeeecc-EE------EEeccC-CccceeeecccCC
Confidence 99999999888877752 34466777743 6788888888999998743 11 111222 2233455555443
Q ss_pred C-CEEEEEeCCCeEEEE
Q psy9598 826 G-TTCALTDSYGHLLVY 841 (1915)
Q Consensus 826 g-~~Lasg~~dG~I~Iw 841 (1915)
. ++|..++....+.|+
T Consensus 297 p~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 297 PIKFISIAGFSNKLHIL 313 (325)
T ss_pred ceEEEEecccceeeeee
Confidence 3 344444555556555
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.9e-13 Score=166.94 Aligned_cols=279 Identities=13% Similarity=0.179 Sum_probs=180.0
Q ss_pred EEEECCCcEEEEECCC-Cc--EEEEEeCCCCCEEEEEEeCCCCEEEEEe-CCCcEEEEECC-CCce--EEEeecCCCCeE
Q psy9598 492 VTGADDLLIKLWRARD-GK--LLATLRGCSGEISDIAIDNRNILLAAGT-VDKTIRIWNLQ-TLAP--ISVLVGHQGIIT 564 (1915)
Q Consensus 492 aTGs~Dg~I~IWd~~t-g~--~~~~l~gH~~~I~~Lafspdg~~LaSgs-~DgtIrVWDl~-tg~~--~~~l~~h~~~V~ 564 (1915)
++...++.|.+|++.+ +. ++.++. +.+....|+++|++++|++++ .++.|.+|++. ++.. +.... ..+...
T Consensus 6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~ 83 (330)
T PRK11028 6 IASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPT 83 (330)
T ss_pred EEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCce
Confidence 3446789999999964 43 455554 345678899999999987765 57889999997 3432 22221 334567
Q ss_pred EEEeccCccCCCcEEEEEe-CCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEE-EeCCCeE
Q psy9598 565 GVNFCPLEVNGFNYLASTS-TDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLAT-GSGDHHV 642 (1915)
Q Consensus 565 sl~fsp~~~~d~~~L~sgs-~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Las-gs~Dg~I 642 (1915)
.|+|+|+ +++|++++ .++.|.+|++.....+...... ..+.....+++|+|+|++|++ ...++.|
T Consensus 84 ~i~~~~~----g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~---------~~~~~~~~~~~~~p~g~~l~v~~~~~~~v 150 (330)
T PRK11028 84 HISTDHQ----GRFLFSASYNANCVSVSPLDKDGIPVAPIQI---------IEGLEGCHSANIDPDNRTLWVPCLKEDRI 150 (330)
T ss_pred EEEECCC----CCEEEEEEcCCCeEEEEEECCCCCCCCceee---------ccCCCcccEeEeCCCCCEEEEeeCCCCEE
Confidence 8999984 46666665 4889999999643221111000 012234677889999988855 4456999
Q ss_pred EEEEecCCCCCce----eEEeccCCCCeeEEEEcCCCCEEEEEeC-CCcEEEEEccC--CceEEeeecccccCCCCcccc
Q psy9598 643 RVYKMDGVDSPLG----ILEVEEHSDKVDSIQWSHSHLRFVSGSR-DGTALIWYYKC--SQWRFIRLDMNTCLPHTKETS 715 (1915)
Q Consensus 643 ~IwDl~~~~~~~~----i~~l~~h~~~V~sl~fspdg~~L~sgs~-DG~I~IWDl~~--~~~~~~~~~~~~~~~~~~~~~ 715 (1915)
.+||+........ ...... ......++|+|+|.+|+++.. +++|.+|++.. +...... ... ..+.
T Consensus 151 ~v~d~~~~g~l~~~~~~~~~~~~-g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~-~~~-~~p~----- 222 (330)
T PRK11028 151 RLFTLSDDGHLVAQEPAEVTTVE-GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQ-TLD-MMPA----- 222 (330)
T ss_pred EEEEECCCCcccccCCCceecCC-CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEE-EEe-cCCC-----
Confidence 9999954221110 111111 234678899999999988776 89999999973 3322111 110 0000
Q ss_pred ccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCC---CCeEEEEEccCCCCEEEEEec-CceEEE
Q psy9598 716 DETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHT---NEVFVLESHPFDSRVLLSAGH-DGLIII 791 (1915)
Q Consensus 716 ~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~---~~V~sl~~sp~dg~~LaSgs~-DG~I~I 791 (1915)
. .........+.|+|+|++|+++...++.|.+|++........+.+|. .....+.++| ++++|++++. +++|.|
T Consensus 223 ~-~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~-dg~~l~va~~~~~~v~v 300 (330)
T PRK11028 223 D-FSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDH-SGKYLIAAGQKSHHISV 300 (330)
T ss_pred c-CCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECC-CCCEEEEEEccCCcEEE
Confidence 0 00112344688999999999987658899999986533222222221 2345789999 8888887765 899999
Q ss_pred EECC
Q psy9598 792 WDIL 795 (1915)
Q Consensus 792 Wdl~ 795 (1915)
|++.
T Consensus 301 ~~~~ 304 (330)
T PRK11028 301 YEID 304 (330)
T ss_pred EEEc
Confidence 9885
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.6e-13 Score=167.35 Aligned_cols=281 Identities=15% Similarity=0.143 Sum_probs=179.7
Q ss_pred EEEEeCCCcEEEEECCC-Cc--eEEEeecCCCCeEEEEeccCccCCCcEEEEE-eCCCeEEEEecccCccccceeccCcc
Q psy9598 533 LAAGTVDKTIRIWNLQT-LA--PISVLVGHQGIITGVNFCPLEVNGFNYLAST-STDGCIGFWKYKLDIDISKTVFHEPV 608 (1915)
Q Consensus 533 LaSgs~DgtIrVWDl~t-g~--~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sg-s~DgtI~iWDl~~~~~~~~~~~~~~~ 608 (1915)
+++...++.|.+|++.+ +. .+..+. +.+....++++|+ +++|+++ ..++.|.+|++.....+.... .
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd----~~~lyv~~~~~~~i~~~~~~~~g~l~~~~-~--- 75 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPD----KRHLYVGVRPEFRVLSYRIADDGALTFAA-E--- 75 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCC----CCEEEEEECCCCcEEEEEECCCCceEEee-e---
Confidence 34446789999999964 33 344443 3466788999994 4777665 458889999986321111110 0
Q ss_pred ccccccCCCCCceEEEEECCCCcEEEEEeC-CCeEEEEEecCCCCC-ceeEEeccCCCCeeEEEEcCCCCEEEE-EeCCC
Q psy9598 609 MFNERIRPGNAHILCSSFSPGGLFLATGSG-DHHVRVYKMDGVDSP-LGILEVEEHSDKVDSIQWSHSHLRFVS-GSRDG 685 (1915)
Q Consensus 609 ~~~~~~~~~~~~V~~l~fspdg~~Lasgs~-Dg~I~IwDl~~~~~~-~~i~~l~~h~~~V~sl~fspdg~~L~s-gs~DG 685 (1915)
. ...+....++|+|+|++|++++. ++.|.+|++...... ..+..+. +.....+++|+|+|++|++ ...++
T Consensus 76 -----~-~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~ 148 (330)
T PRK11028 76 -----S-PLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKED 148 (330)
T ss_pred -----e-cCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCC
Confidence 0 01124568999999998887764 889999999532221 1222222 3345677889999998855 45679
Q ss_pred cEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCC--Cc--eEEEee
Q psy9598 686 TALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFN--GD--LVQVLK 761 (1915)
Q Consensus 686 ~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~t--g~--~i~~l~ 761 (1915)
.|.+||+.+........ .. .. ..........++|+|+|++++++...++.|.+|++.. +. .+..+.
T Consensus 149 ~v~v~d~~~~g~l~~~~------~~---~~-~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~ 218 (330)
T PRK11028 149 RIRLFTLSDDGHLVAQE------PA---EV-TTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLD 218 (330)
T ss_pred EEEEEEECCCCcccccC------CC---ce-ecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEe
Confidence 99999997633110000 00 00 0001233567899999999998887689999999973 33 344443
Q ss_pred CC------CCCeEEEEEccCCCCEEEEEe-cCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEEeC
Q psy9598 762 GH------TNEVFVLESHPFDSRVLLSAG-HDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDS 834 (1915)
Q Consensus 762 gH------~~~V~sl~~sp~dg~~LaSgs-~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~ 834 (1915)
.+ ......+.++| ++++|+++. .+++|.+|++...... +........+ .....++|+|||++|+++..
T Consensus 219 ~~p~~~~~~~~~~~i~~~p-dg~~lyv~~~~~~~I~v~~i~~~~~~-~~~~~~~~~~---~~p~~~~~~~dg~~l~va~~ 293 (330)
T PRK11028 219 MMPADFSDTRWAADIHITP-DGRHLYACDRTASLISVFSVSEDGSV-LSFEGHQPTE---TQPRGFNIDHSGKYLIAAGQ 293 (330)
T ss_pred cCCCcCCCCccceeEEECC-CCCEEEEecCCCCeEEEEEEeCCCCe-EEEeEEEecc---ccCCceEECCCCCEEEEEEc
Confidence 22 11234688999 888888875 4789999999654320 1112211111 24557899999999998875
Q ss_pred -CCeEEEEeCC
Q psy9598 835 -YGHLLVYGLG 844 (1915)
Q Consensus 835 -dG~I~Iwdl~ 844 (1915)
++.|.||.+.
T Consensus 294 ~~~~v~v~~~~ 304 (330)
T PRK11028 294 KSHHISVYEID 304 (330)
T ss_pred cCCcEEEEEEc
Confidence 8899999885
|
|
| >KOG4497|consensus | Back alignment and domain information |
|---|
Probab=99.63 E-value=6.6e-15 Score=163.94 Aligned_cols=313 Identities=13% Similarity=0.192 Sum_probs=217.4
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEE-eCCCcEEEEECCCCceEEEeecC
Q psy9598 481 CVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAG-TVDKTIRIWNLQTLAPISVLVGH 559 (1915)
Q Consensus 481 ~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSg-s~DgtIrVWDl~tg~~~~~l~~h 559 (1915)
-++|||+|++||+++.- .+.|-|..|.++.+.+. .-..|..|.|..|.-+++.+ ..++.|.+|++....-...+...
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~-cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg 90 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFL-CLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEG 90 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHH-HHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccC
Confidence 36799999999999876 88899988877655443 24568889999988766655 67889999999988888888888
Q ss_pred CCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCC
Q psy9598 560 QGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGD 639 (1915)
Q Consensus 560 ~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~D 639 (1915)
.+.+.+++|+|++ ..+|.+...+-.|.+|.+.+..+..... ....+..++|+++|++.+..+.-
T Consensus 91 ~agls~~~WSPdg---rhiL~tseF~lriTVWSL~t~~~~~~~~-------------pK~~~kg~~f~~dg~f~ai~sRr 154 (447)
T KOG4497|consen 91 QAGLSSISWSPDG---RHILLTSEFDLRITVWSLNTQKGYLLPH-------------PKTNVKGYAFHPDGQFCAILSRR 154 (447)
T ss_pred CCcceeeeECCCc---ceEeeeecceeEEEEEEeccceeEEecc-------------cccCceeEEECCCCceeeeeecc
Confidence 8999999999953 3777888889999999998775422111 12446889999999998888764
Q ss_pred CeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCcccccccc
Q psy9598 640 HHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETN 719 (1915)
Q Consensus 640 g~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 719 (1915)
...-.+.+........+..+.-.+-..+.|.|+|||..|++ ||---.-.+. ...
T Consensus 155 DCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laV---------wd~~Leykv~-----------------aYe 208 (447)
T KOG4497|consen 155 DCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAV---------WDNVLEYKVY-----------------AYE 208 (447)
T ss_pred cHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEE---------ecchhhheee-----------------eee
Confidence 32222222111222223334444556788999999987764 4321110000 011
Q ss_pred ccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceE------------------------------------------
Q psy9598 720 KKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLV------------------------------------------ 757 (1915)
Q Consensus 720 ~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i------------------------------------------ 757 (1915)
....+..+.|+|.+++|++|+. |+.++|.+--+.+..
T Consensus 209 ~~lG~k~v~wsP~~qflavGsy-D~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~ 287 (447)
T KOG4497|consen 209 RGLGLKFVEWSPCNQFLAVGSY-DQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAH 287 (447)
T ss_pred eccceeEEEeccccceEEeecc-chhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccC
Confidence 2346788999999999999998 998888664322111
Q ss_pred ------------------EEee------CCCCCeEEEEEccCCCCEEEEEec--CceEEEEECCCCccccceeeeeeecC
Q psy9598 758 ------------------QVLK------GHTNEVFVLESHPFDSRVLLSAGH--DGLIIIWDILSSKQRGYKWFHNIVEG 811 (1915)
Q Consensus 758 ------------------~~l~------gH~~~V~sl~~sp~dg~~LaSgs~--DG~I~IWdl~s~~~~~~~~~~~~~~~ 811 (1915)
+.++ ...-.+.-++|++ |..+++|-.. -..+-|||+...+. ...+.
T Consensus 288 ~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~-Ds~y~aTrnd~~PnalW~Wdlq~l~l--~avLi----- 359 (447)
T KOG4497|consen 288 IWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSC-DSTYAATRNDKYPNALWLWDLQNLKL--HAVLI----- 359 (447)
T ss_pred ccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecC-CceEEeeecCCCCceEEEEechhhhh--hhhhh-----
Confidence 0111 0112356688999 8888888754 36799999987665 22221
Q ss_pred CCCcceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc
Q psy9598 812 QGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGGFK 847 (1915)
Q Consensus 812 ~~~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl~s~~ 847 (1915)
...+|....|+|....|+.+....++++|......
T Consensus 360 -Qk~piraf~WdP~~prL~vctg~srLY~W~psg~~ 394 (447)
T KOG4497|consen 360 -QKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPR 394 (447)
T ss_pred -hccceeEEEeCCCCceEEEEcCCceEEEEcCCCce
Confidence 34679999999999999998888899999887643
|
|
| >KOG0303|consensus | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.8e-14 Score=162.82 Aligned_cols=229 Identities=19% Similarity=0.230 Sum_probs=172.1
Q ss_pred EEeCCCCCEEEEEEeC-CCCEEEEEeCCCcEEEEECCCC-------ceEEEeecCCCCeEEEEeccCccCCCcEEEEEeC
Q psy9598 513 TLRGCSGEISDIAIDN-RNILLAAGTVDKTIRIWNLQTL-------APISVLVGHQGIITGVNFCPLEVNGFNYLASTST 584 (1915)
Q Consensus 513 ~l~gH~~~I~~Lafsp-dg~~LaSgs~DgtIrVWDl~tg-------~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~ 584 (1915)
.+.||+++|..++|+| +...|||||.|.+|.||.+-.+ .++..|.||...|.-|+|+|.. .+.|++++.
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA---~NVLlsag~ 152 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTA---PNVLLSAGS 152 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccc---hhhHhhccC
Confidence 4579999999999999 4568999999999999998543 4578899999999999999965 589999999
Q ss_pred CCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCC
Q psy9598 585 DGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSD 664 (1915)
Q Consensus 585 DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~ 664 (1915)
|.+|.+|++.++..+..+ .|...|++++|+.+|.+|++++.|..|+|||.+. ...+..-.+|.+
T Consensus 153 Dn~v~iWnv~tgeali~l-------------~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~---~~~v~e~~~heG 216 (472)
T KOG0303|consen 153 DNTVSIWNVGTGEALITL-------------DHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRR---GTVVSEGVAHEG 216 (472)
T ss_pred CceEEEEeccCCceeeec-------------CCCCeEEEEEeccCCceeeeecccceeEEEcCCC---CcEeeecccccC
Confidence 999999999999754332 2668899999999999999999999999999843 344555566765
Q ss_pred C-eeEEEEcCCCCEEEEEe---CCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEE
Q psy9598 665 K-VDSIQWSHSHLRFVSGS---RDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAI 740 (1915)
Q Consensus 665 ~-V~sl~fspdg~~L~sgs---~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s 740 (1915)
. -..+.|-.+|..+-+|. .+..+-|||....+.- ...........|..--|+++...|+.++
T Consensus 217 ~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP--------------~~~~elDtSnGvl~PFyD~dt~ivYl~G 282 (472)
T KOG0303|consen 217 AKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEP--------------IALQELDTSNGVLLPFYDPDTSIVYLCG 282 (472)
T ss_pred CCcceeEEeccCceeeeccccccccceeccCcccccCc--------------ceeEEeccCCceEEeeecCCCCEEEEEe
Confidence 3 33445777888555553 5678999987654311 1112223456677778899999999988
Q ss_pred ecCCeEEEEECCCCce-EEEeeC--CCCCeEEEEEcc
Q psy9598 741 NFNFQIKIWDAFNGDL-VQVLKG--HTNEVFVLESHP 774 (1915)
Q Consensus 741 ~~Dg~I~vwD~~tg~~-i~~l~g--H~~~V~sl~~sp 774 (1915)
-.|+.|+.|.+....+ ++-|.. ...+-..+.|-|
T Consensus 283 KGD~~IRYyEit~d~P~~hyln~f~S~epQRG~g~mP 319 (472)
T KOG0303|consen 283 KGDSSIRYFEITNEPPFVHYLNTFSSKEPQRGMGFMP 319 (472)
T ss_pred cCCcceEEEEecCCCceeEEecccccCCccccccccc
Confidence 8899999999876542 333321 122344555555
|
|
| >KOG1524|consensus | Back alignment and domain information |
|---|
Probab=99.61 E-value=2e-14 Score=168.58 Aligned_cols=269 Identities=17% Similarity=0.245 Sum_probs=184.8
Q ss_pred CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeE-EEEeccC---ccCCCcEEEEEeCCCeEEEE
Q psy9598 516 GCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIIT-GVNFCPL---EVNGFNYLASTSTDGCIGFW 591 (1915)
Q Consensus 516 gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~-sl~fsp~---~~~d~~~L~sgs~DgtI~iW 591 (1915)
.|...|.|+.|+.....+++++ |..+.+|.--+...+..+.-....|. .+..-+- +-.....|+.++.||.+.+.
T Consensus 12 r~~e~vc~v~w~~~eei~~~~d-Dh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il 90 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSD-DHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVIL 90 (737)
T ss_pred ccceeEEeecccccceEEEecc-CceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEe
Confidence 4666778999988877666665 55555554433222222221111111 1111111 11245689999999999887
Q ss_pred ecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEE
Q psy9598 592 KYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQW 671 (1915)
Q Consensus 592 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~f 671 (1915)
+-... ......+|.+.+.|..|+|+|.-|+++|.||.|++|.-.+ ..-.++.....+|.|++|
T Consensus 91 ~k~~r-------------VE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsG----MLRStl~Q~~~~v~c~~W 153 (737)
T KOG1524|consen 91 NKSAR-------------VERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSG----MLRSTVVQNEESIRCARW 153 (737)
T ss_pred cccch-------------hhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccc----hHHHHHhhcCceeEEEEE
Confidence 53221 1122346788999999999999999999999999998632 222233446678999999
Q ss_pred cCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEEC
Q psy9598 672 SHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDA 751 (1915)
Q Consensus 672 spdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~ 751 (1915)
.|+.+.++-|-. |.+.|=-+... ........|.+-|.++.|++....|++|+. |...+|||.
T Consensus 154 ~p~S~~vl~c~g-~h~~IKpL~~n----------------~k~i~WkAHDGiiL~~~W~~~s~lI~sgGE-D~kfKvWD~ 215 (737)
T KOG1524|consen 154 APNSNSIVFCQG-GHISIKPLAAN----------------SKIIRWRAHDGLVLSLSWSTQSNIIASGGE-DFRFKIWDA 215 (737)
T ss_pred CCCCCceEEecC-CeEEEeecccc----------------cceeEEeccCcEEEEeecCccccceeecCC-ceeEEeecc
Confidence 999876655433 33444322221 122334568899999999999999999998 999999997
Q ss_pred CCCceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEE
Q psy9598 752 FNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCAL 831 (1915)
Q Consensus 752 ~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Las 831 (1915)
.|..+..-..|..+|++++|+| + ..++.|+.. ++++ .....|.|+.++||+||..+++
T Consensus 216 -~G~~Lf~S~~~ey~ITSva~np-d-~~~~v~S~n-t~R~------------------~~p~~GSifnlsWS~DGTQ~a~ 273 (737)
T KOG1524|consen 216 -QGANLFTSAAEEYAITSVAFNP-E-KDYLLWSYN-TARF------------------SSPRVGSIFNLSWSADGTQATC 273 (737)
T ss_pred -cCcccccCChhccceeeeeecc-c-cceeeeeee-eeee------------------cCCCccceEEEEEcCCCceeec
Confidence 4777888889999999999999 5 666666644 4441 1234578999999999999999
Q ss_pred EeCCCeEEEEe
Q psy9598 832 TDSYGHLLVYG 842 (1915)
Q Consensus 832 g~~dG~I~Iwd 842 (1915)
|+..|++.+=.
T Consensus 274 gt~~G~v~~A~ 284 (737)
T KOG1524|consen 274 GTSTGQLIVAY 284 (737)
T ss_pred cccCceEEEee
Confidence 99999986543
|
|
| >KOG1523|consensus | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.4e-13 Score=154.04 Aligned_cols=209 Identities=17% Similarity=0.203 Sum_probs=170.1
Q ss_pred CCcEEEEEEcCCCCEEEEEECCCcEEEEECCCC---cEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCC---
Q psy9598 476 LSAVFCVLFDKLGEVIVTGADDLLIKLWRARDG---KLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQT--- 549 (1915)
Q Consensus 476 ~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg---~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~t--- 549 (1915)
..+|+|.+|++|+..+|++.....|.||..... +..+++..|...|++|.|+|..+.|++|+.|..-+||....
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~ 89 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGT 89 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCe
Confidence 479999999999999999999999999987654 47889999999999999999999999999999999999833
Q ss_pred CceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCC
Q psy9598 550 LAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPG 629 (1915)
Q Consensus 550 g~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspd 629 (1915)
.++...|..|...+++|.|+|.. +.|++||....|.||-+.......... ..-.++...|+|++|+|+
T Consensus 90 WkptlvLlRiNrAAt~V~WsP~e----nkFAVgSgar~isVcy~E~ENdWWVsK--------hikkPirStv~sldWhpn 157 (361)
T KOG1523|consen 90 WKPTLVLLRINRAATCVKWSPKE----NKFAVGSGARLISVCYYEQENDWWVSK--------HIKKPIRSTVTSLDWHPN 157 (361)
T ss_pred eccceeEEEeccceeeEeecCcC----ceEEeccCccEEEEEEEecccceehhh--------hhCCccccceeeeeccCC
Confidence 45667778899999999999955 899999999999999776553221110 111245588999999999
Q ss_pred CcEEEEEeCCCeEEEEEec-----CCC----------CCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccC
Q psy9598 630 GLFLATGSGDHHVRVYKMD-----GVD----------SPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKC 694 (1915)
Q Consensus 630 g~~Lasgs~Dg~I~IwDl~-----~~~----------~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~ 694 (1915)
+-+|++|+.|+..+||..- ... -...+..+....+.|..+.|+|+|..|+-.+.|+++.+-|...
T Consensus 158 nVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~ 237 (361)
T KOG1523|consen 158 NVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAG 237 (361)
T ss_pred cceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCC
Confidence 9999999999999999752 100 0112223335668899999999999999999999999988765
Q ss_pred Cc
Q psy9598 695 SQ 696 (1915)
Q Consensus 695 ~~ 696 (1915)
..
T Consensus 238 p~ 239 (361)
T KOG1523|consen 238 PS 239 (361)
T ss_pred Cc
Confidence 53
|
|
| >KOG0290|consensus | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.2e-13 Score=150.20 Aligned_cols=247 Identities=18% Similarity=0.348 Sum_probs=178.9
Q ss_pred cCCCCcEEEEEEcCCC-----CEEEEEECCCcEEEEECCC--Cc--EEEEE-----eCCCCCEEEEEEeC-CCCEEEEEe
Q psy9598 473 LGHLSAVFCVLFDKLG-----EVIVTGADDLLIKLWRARD--GK--LLATL-----RGCSGEISDIAIDN-RNILLAAGT 537 (1915)
Q Consensus 473 ~gH~~~V~~vafspdg-----~~LaTGs~Dg~I~IWd~~t--g~--~~~~l-----~gH~~~I~~Lafsp-dg~~LaSgs 537 (1915)
..|..+++.+.|.|+. .+|||.+ | .++||.+.. .. +...| ..+.+++++..|+. +-++|.++|
T Consensus 93 fd~~YP~tK~~wiPd~~g~~pdlLATs~-D-~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSS 170 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGVYPDLLATSS-D-FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSS 170 (364)
T ss_pred CCCCCCccceEecCCccccCcchhhccc-C-eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeec
Confidence 4799999999999876 4566654 3 799999873 22 11222 24577899999986 677999999
Q ss_pred CCCcEEEEECCCCce---EEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCcccccccc
Q psy9598 538 VDKTIRIWNLQTLAP---ISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERI 614 (1915)
Q Consensus 538 ~DgtIrVWDl~tg~~---~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~ 614 (1915)
-|-+..|||++++.. ...|-.|...|..|+|.. ++.+.|+++|.||+|++||++...-. ++....+.
T Consensus 171 iDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~---~s~~~FASvgaDGSvRmFDLR~leHS-TIIYE~p~------ 240 (364)
T KOG0290|consen 171 IDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLK---GSRDVFASVGADGSVRMFDLRSLEHS-TIIYEDPS------ 240 (364)
T ss_pred ccCeEEEEEEeeccccceeeEEEecCcceeEEEecc---CccceEEEecCCCcEEEEEecccccc-eEEecCCC------
Confidence 999999999998643 566789999999999997 35689999999999999999875421 22222111
Q ss_pred CCCCCceEEEEECCC-CcEEEEEeCC-CeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCC-CEEEEEeCCCcEEEEE
Q psy9598 615 RPGNAHILCSSFSPG-GLFLATGSGD-HHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSH-LRFVSGSRDGTALIWY 691 (1915)
Q Consensus 615 ~~~~~~V~~l~fspd-g~~Lasgs~D-g~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg-~~L~sgs~DG~I~IWD 691 (1915)
.......++|++. -+++|+-..| ..|.|.|++.. ...+..+.+|.+.|++|+|.|.. ..|++|+.|..+.|||
T Consensus 241 --~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P--~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWD 316 (364)
T KOG0290|consen 241 --PSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVP--CTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWD 316 (364)
T ss_pred --CCCcceeeccCcCCchHHhhhhcCCceEEEEEecCC--CcceehhhcCcccccceEecCCCCceeeecCCcceEEEEe
Confidence 1366788999885 4566665444 47999999643 34567889999999999999864 5899999999999999
Q ss_pred ccCCceEEeeecccccCCCCccccccccccccEEEEEECCC-CCEEEEEEecCCeEEE
Q psy9598 692 YKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDAS-DRWVITAINFNFQIKI 748 (1915)
Q Consensus 692 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spd-g~~L~t~s~~Dg~I~v 748 (1915)
+...-. .+..... ......+.|+.+.|++. ..+|+++. +..+.+
T Consensus 317 l~q~~~----------~~~~dPi-lay~a~~EVNqi~Ws~~~~Dwiai~~--~kklei 361 (364)
T KOG0290|consen 317 LQQMPR----------ENGEDPI-LAYTAGGEVNQIQWSSSQPDWIAICF--GKKLEI 361 (364)
T ss_pred cccccc----------cCCCCch-hhhhccceeeeeeecccCCCEEEEEe--cCeeeE
Confidence 976431 0111111 12226788999999964 55666554 344443
|
|
| >KOG1245|consensus | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.6e-15 Score=207.23 Aligned_cols=96 Identities=39% Similarity=0.622 Sum_probs=92.4
Q ss_pred HHHHHHHHhcCCCCCCCCCCCCCCCCCCccccCCCcCCHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhhcCCCCCHHH
Q psy9598 122 CREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQNKRSKIY 201 (1915)
Q Consensus 122 ~~~il~~l~~~~~~~~F~~pvd~~~~pdY~~iIk~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~Lif~N~~~yN~~~~s~i~ 201 (1915)
|..||.+|+.|..+|||++||+...+||||+|||+||||+||+.|+..|.|.++++|..||.|||.||.+||. . |.|+
T Consensus 1306 ~e~il~e~~~~~~awPFlepVn~~~vp~Y~~IIk~Pmdl~tir~k~~~~~Y~~~eef~~Di~lvf~Nc~~yN~-~-s~i~ 1383 (1404)
T KOG1245|consen 1306 CEDILHELVVHKAAWPFLEPVNPKEVPDYYDIIKKPMDLSTIREKLSKGIYPSPEEFATDIELVFDNCETYNE-D-SEIG 1383 (1404)
T ss_pred HHHHHHHHHHhhhcchhhccCChhhcccHHHHhcChhHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhcc-c-hhhh
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999 4 8999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy9598 202 IMTTRLSEFAEEHLRRLT 219 (1915)
Q Consensus 202 ~~a~~l~~~f~~~~~~~~ 219 (1915)
..+..|.++|++.|....
T Consensus 1384 ~ag~~l~~ff~~~~~~~~ 1401 (1404)
T KOG1245|consen 1384 RAGTCLRRFFHKRWRKKF 1401 (1404)
T ss_pred hhcchHHHHHHHHHHhhc
Confidence 999999999999776543
|
|
| >KOG1524|consensus | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.1e-13 Score=162.42 Aligned_cols=265 Identities=17% Similarity=0.224 Sum_probs=184.3
Q ss_pred CCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCE-EEEEEeC-------CCCEEEEEeCCCcEEEE
Q psy9598 474 GHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEI-SDIAIDN-------RNILLAAGTVDKTIRIW 545 (1915)
Q Consensus 474 gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I-~~Lafsp-------dg~~LaSgs~DgtIrVW 545 (1915)
-|..-|.||.|+.+...+++++++ .+.+|+-.+......+.-...-| +.+..-+ ....|+.++.||.+.|.
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh-~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il 90 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDH-QIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVIL 90 (737)
T ss_pred ccceeEEeecccccceEEEeccCc-eEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEe
Confidence 466677899999887777766555 55555433332222221111111 1111111 23467888889999988
Q ss_pred ECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEE
Q psy9598 546 NLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSS 625 (1915)
Q Consensus 546 Dl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~ 625 (1915)
+ ..++.-..+..|.+.|.|-.|+|+ |.-|++++.||.|++|.-...-. .. +......|+|++
T Consensus 91 ~-k~~rVE~sv~AH~~A~~~gRW~~d----GtgLlt~GEDG~iKiWSrsGMLR--St-----------l~Q~~~~v~c~~ 152 (737)
T KOG1524|consen 91 N-KSARVERSISAHAAAISSGRWSPD----GAGLLTAGEDGVIKIWSRSGMLR--ST-----------VVQNEESIRCAR 152 (737)
T ss_pred c-ccchhhhhhhhhhhhhhhcccCCC----CceeeeecCCceEEEEeccchHH--HH-----------HhhcCceeEEEE
Confidence 7 446777788899999999999994 58999999999999997543321 11 111236799999
Q ss_pred ECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeeccc
Q psy9598 626 FSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMN 705 (1915)
Q Consensus 626 fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~ 705 (1915)
|.|+...++.+.. +.+.|=.+ .....+....+|.+-|.++.|++..+++++|+.|-..+|||-.....
T Consensus 153 W~p~S~~vl~c~g-~h~~IKpL---~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~L-------- 220 (737)
T KOG1524|consen 153 WAPNSNSIVFCQG-GHISIKPL---AANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANL-------- 220 (737)
T ss_pred ECCCCCceEEecC-CeEEEeec---ccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCccc--------
Confidence 9999877666544 34555555 33455677899999999999999999999999999999999764331
Q ss_pred ccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEEec
Q psy9598 706 TCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGH 785 (1915)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~ 785 (1915)
.....|..+|++++|.|+ ..++.++. +++++ -....+.|..++|++ ||..+++|..
T Consensus 221 ---------f~S~~~ey~ITSva~npd-~~~~v~S~--nt~R~-----------~~p~~GSifnlsWS~-DGTQ~a~gt~ 276 (737)
T KOG1524|consen 221 ---------FTSAAEEYAITSVAFNPE-KDYLLWSY--NTARF-----------SSPRVGSIFNLSWSA-DGTQATCGTS 276 (737)
T ss_pred ---------ccCChhccceeeeeeccc-cceeeeee--eeeee-----------cCCCccceEEEEEcC-CCceeecccc
Confidence 223457889999999999 44444442 33441 124557899999999 9999999999
Q ss_pred CceEEEEE
Q psy9598 786 DGLIIIWD 793 (1915)
Q Consensus 786 DG~I~IWd 793 (1915)
.|.|.+=-
T Consensus 277 ~G~v~~A~ 284 (737)
T KOG1524|consen 277 TGQLIVAY 284 (737)
T ss_pred CceEEEee
Confidence 99876643
|
|
| >KOG0771|consensus | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.1e-13 Score=157.28 Aligned_cols=198 Identities=21% Similarity=0.209 Sum_probs=148.0
Q ss_pred EEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEee
Q psy9598 622 LCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIR 701 (1915)
Q Consensus 622 ~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~ 701 (1915)
.+++|+.+|..|++|+.||++|||++ .....+.....|...|.++.|+|||.+|++-+.| ..+||+..++..+...
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~---Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~ 223 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEW---PSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARK 223 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEec---CcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhc
Confidence 78999999999999999999999997 3344566678899999999999999999999999 9999999988532211
Q ss_pred ecccccCCCCccccccccccccEEEEEECCCC---CEEEEEE-ecCCeEEEEECCCCc------eEEEeeCCCCCeEEEE
Q psy9598 702 LDMNTCLPHTKETSDETNKKIKVTMVAWDASD---RWVITAI-NFNFQIKIWDAFNGD------LVQVLKGHTNEVFVLE 771 (1915)
Q Consensus 702 ~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg---~~L~t~s-~~Dg~I~vwD~~tg~------~i~~l~gH~~~V~sl~ 771 (1915)
. .......+..+.|+.++ .+.+++. ...+.|..|++.... ....+..+ ..|++++
T Consensus 224 t--------------~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~-~siSsl~ 288 (398)
T KOG0771|consen 224 T--------------PFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRF-KSISSLA 288 (398)
T ss_pred C--------------CcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhcc-CcceeEE
Confidence 1 01233345556677665 3333322 224556666654321 11122223 3699999
Q ss_pred EccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q psy9598 772 SHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGG 845 (1915)
Q Consensus 772 ~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl~s 845 (1915)
++. +|++++.|+.||.|-|++..+.+. +..+ ...|.+.|+.+.|+||.+++++.+.+....|..+.-
T Consensus 289 VS~-dGkf~AlGT~dGsVai~~~~~lq~--~~~v----k~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 289 VSD-DGKFLALGTMDGSVAIYDAKSLQR--LQYV----KEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred EcC-CCcEEEEeccCCcEEEEEeceeee--eEee----hhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 999 999999999999999999988665 3333 345668999999999999999999998888887764
|
|
| >KOG2110|consensus | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.7e-12 Score=148.22 Aligned_cols=323 Identities=11% Similarity=0.086 Sum_probs=210.8
Q ss_pred CCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCC--CcEEEEECCCCce
Q psy9598 475 HLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVD--KTIRIWNLQTLAP 552 (1915)
Q Consensus 475 H~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~D--gtIrVWDl~tg~~ 552 (1915)
....+..+.|..+...|..|+.|| -++|+................|.-+-|+.. +||..+.+ ..++|.++..+..
T Consensus 4 ~~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSSS--LvaiV~~~qpr~Lkv~~~Kk~~~ 80 (391)
T KOG2110|consen 4 KKPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSSS--LVAIVSIKQPRKLKVVHFKKKTT 80 (391)
T ss_pred CCcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecccc--eeEEEecCCCceEEEEEcccCce
Confidence 345677888999999999999997 578887665443322223345666667655 66655554 3589999888777
Q ss_pred EEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcE
Q psy9598 553 ISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLF 632 (1915)
Q Consensus 553 ~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~ 632 (1915)
+..+. ....|.+|.++- +.|+++-.+. |.|||+.+...+.++... .++...+.+++++..+.+
T Consensus 81 ICe~~-fpt~IL~VrmNr------~RLvV~Lee~-IyIydI~~MklLhTI~t~---------~~n~~gl~AlS~n~~n~y 143 (391)
T KOG2110|consen 81 ICEIF-FPTSILAVRMNR------KRLVVCLEES-IYIYDIKDMKLLHTIETT---------PPNPKGLCALSPNNANCY 143 (391)
T ss_pred EEEEe-cCCceEEEEEcc------ceEEEEEccc-EEEEecccceeehhhhcc---------CCCccceEeeccCCCCce
Confidence 76664 456789999976 5666666554 999999998766555433 133355777778877878
Q ss_pred EEEEe--CCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCc-EEEEEccCCceEEeeecccccCC
Q psy9598 633 LATGS--GDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGT-ALIWYYKCSQWRFIRLDMNTCLP 709 (1915)
Q Consensus 633 Lasgs--~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~-I~IWDl~~~~~~~~~~~~~~~~~ 709 (1915)
|+.-+ ..|.|.|||+ .....+..+..|.+.+.+|+|+++|.+|||+|..|+ ||||.+..++....+..
T Consensus 144 lAyp~s~t~GdV~l~d~---~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRR------ 214 (391)
T KOG2110|consen 144 LAYPGSTTSGDVVLFDT---INLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRR------ 214 (391)
T ss_pred EEecCCCCCceEEEEEc---ccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeC------
Confidence 88633 3689999999 445667778899999999999999999999999998 68999988886543210
Q ss_pred CCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceE
Q psy9598 710 HTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLI 789 (1915)
Q Consensus 710 ~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I 789 (1915)
......|.+++|++++.+|+++++ .++|+||.+.... ......+-....|...-...+.+---.+.-
T Consensus 215 --------G~~~~~IySL~Fs~ds~~L~~sS~-TeTVHiFKL~~~~----~~~~~~p~~~~~~~~~~sk~~~sylps~V~ 281 (391)
T KOG2110|consen 215 --------GTYPVSIYSLSFSPDSQFLAASSN-TETVHIFKLEKVS----NNPPESPTAGTSWFGKVSKAATSYLPSQVS 281 (391)
T ss_pred --------CceeeEEEEEEECCCCCeEEEecC-CCeEEEEEecccc----cCCCCCCCCCCcccchhhhhhhhhcchhhh
Confidence 112457899999999999999998 9999999986533 111111100000100000000000001122
Q ss_pred EEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q psy9598 790 IIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGG 845 (1915)
Q Consensus 790 ~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl~s 845 (1915)
.+|+.... ..... +...+...+..+.-.+...++.+++.||+++.|.+..
T Consensus 282 ~~~~~~R~----FAt~~--l~~s~~~~~~~l~~~~~~~~v~vas~dG~~y~y~l~~ 331 (391)
T KOG2110|consen 282 SVLDQSRK----FATAK--LPESGRKNICSLSSIQKIPRVLVASYDGHLYSYRLPP 331 (391)
T ss_pred hhhhhccc----eeEEE--ccCCCccceEEeeccCCCCEEEEEEcCCeEEEEEcCC
Confidence 23554221 11111 1112222333333335788999999999999999874
|
|
| >KOG1523|consensus | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.7e-13 Score=151.85 Aligned_cols=256 Identities=18% Similarity=0.203 Sum_probs=185.4
Q ss_pred EeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCC---ceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEE
Q psy9598 514 LRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTL---APISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGF 590 (1915)
Q Consensus 514 l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg---~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~i 590 (1915)
+..-..+|+|.+|++|++.+|.+.....|.||..... +..+++..|...|++|.|+|.. +.|++|+.|..-.+
T Consensus 6 ~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~s----nrIvtcs~drnayV 81 (361)
T KOG1523|consen 6 FHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKS----NRIVTCSHDRNAYV 81 (361)
T ss_pred eeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCC----CceeEccCCCCccc
Confidence 3334678999999999999999999999999988654 4688999999999999999955 89999999999999
Q ss_pred EecccC-ccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCC-ceeEEeccCCCCeeE
Q psy9598 591 WKYKLD-IDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSP-LGILEVEEHSDKVDS 668 (1915)
Q Consensus 591 WDl~~~-~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~-~~i~~l~~h~~~V~s 668 (1915)
|....+ .-...+. +..++..++|+.|+|.++.||+|+.-..|.||.+...... ..-+.-..+.+.|.+
T Consensus 82 w~~~~~~~Wkptlv----------LlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~s 151 (361)
T KOG1523|consen 82 WTQPSGGTWKPTLV----------LLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTS 151 (361)
T ss_pred cccCCCCeecccee----------EEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceee
Confidence 988433 2222222 2234578999999999999999999999999998544332 111223457788999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEccCCc--eEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeE
Q psy9598 669 IQWSHSHLRFVSGSRDGTALIWYYKCSQ--WRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQI 746 (1915)
Q Consensus 669 l~fspdg~~L~sgs~DG~I~IWDl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I 746 (1915)
+.|+|++-+|++||.|+.++||..--.. .......-...++............+.|..+.|+|+|..|+-.+. |..+
T Consensus 152 ldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~H-ds~v 230 (361)
T KOG1523|consen 152 LDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGH-DSTV 230 (361)
T ss_pred eeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecC-CCce
Confidence 9999999999999999999999642111 000000011112222233333466789999999999999999998 9999
Q ss_pred EEEECCCCc-eEEEeeCCCCCeEEEEEccCCCCEEEEEecC
Q psy9598 747 KIWDAFNGD-LVQVLKGHTNEVFVLESHPFDSRVLLSAGHD 786 (1915)
Q Consensus 747 ~vwD~~tg~-~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~D 786 (1915)
.+-|..... .+..+....-+..++.|-. ...++.+|.|
T Consensus 231 ~~~da~~p~~~v~~~~~~~lP~ls~~~is--e~~vv~ag~~ 269 (361)
T KOG1523|consen 231 SFVDAAGPSERVQSVATAQLPLLSVSWIS--ENSVVAAGYD 269 (361)
T ss_pred EEeecCCCchhccchhhccCCceeeEeec--CCceeecCCC
Confidence 999986653 3333333335666776654 3445555555
|
|
| >KOG1472|consensus | Back alignment and domain information |
|---|
Probab=99.56 E-value=8.9e-15 Score=183.85 Aligned_cols=107 Identities=34% Similarity=0.523 Sum_probs=99.7
Q ss_pred chhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCccccCCCcCCHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhhcC
Q psy9598 115 PFNWKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQ 194 (1915)
Q Consensus 115 ~~~~~~~~~~il~~l~~~~~~~~F~~pvd~~~~pdY~~iIk~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~Lif~N~~~yN~ 194 (1915)
+..+......+|..|..|.++|||++||+..++||||.+|++||||.||+.+|..++|..+..|..|+.+||+||+.||+
T Consensus 604 ~~~~~s~~~~il~~l~~h~~awPf~~Pv~~~e~pdyy~~I~~pmDl~tM~~~l~~~~y~~~~~f~ad~~~vf~ncr~yn~ 683 (720)
T KOG1472|consen 604 PGKLFSAIQNILDQLQNHGDAWPFLKPVNKKEVPDYYDVIKHPMDLRTMQNRLKDNQYTEVELFMADVVRVFANCRMYNG 683 (720)
T ss_pred cchhhHHHHhHHhhhhcCCccCCccCccccccCCcHHHHhcccccHHHHhhhccccchhhHHHHHHHHHHHHhhhhccCC
Confidence 34455678899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHhh
Q psy9598 195 NKRSKIYIMTTRLSEFAEEHLRRLTVRW 222 (1915)
Q Consensus 195 ~~~s~i~~~a~~l~~~f~~~~~~~~~~~ 222 (1915)
.. +..|+.|..|+.+|..+++......
T Consensus 684 ~~-~~y~k~~~~le~~~~~k~~~~i~~~ 710 (720)
T KOG1472|consen 684 SD-TQYYKCAQALEKFFLFKLNELILRV 710 (720)
T ss_pred cc-chheecccchhhhhcchhhhhhhhh
Confidence 65 9999999999999999998876654
|
|
| >KOG0644|consensus | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.5e-14 Score=177.09 Aligned_cols=272 Identities=16% Similarity=0.222 Sum_probs=194.7
Q ss_pred EEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEE
Q psy9598 510 LLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIG 589 (1915)
Q Consensus 510 ~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~ 589 (1915)
.+..|.||.+.|.|+.|...|.++++|+.|..|+||...++.+++...||.+.|+.++.+.. ..+++++|.|..|+
T Consensus 182 ~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~----n~~iaaaS~D~vIr 257 (1113)
T KOG0644|consen 182 NIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSN----NTMIAAASNDKVIR 257 (1113)
T ss_pred HHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchh----hhhhhhcccCceEE
Confidence 44567799999999999999999999999999999999999999999999999998887652 24455555555555
Q ss_pred EEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEE
Q psy9598 590 FWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSI 669 (1915)
Q Consensus 590 iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl 669 (1915)
+|.+.. ...+..+.+|++.|++|
T Consensus 258 vWrl~~---------------------------------------------------------~~pvsvLrghtgavtai 280 (1113)
T KOG0644|consen 258 VWRLPD---------------------------------------------------------GAPVSVLRGHTGAVTAI 280 (1113)
T ss_pred EEecCC---------------------------------------------------------CchHHHHhccccceeee
Confidence 554332 23344567899999999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEE
Q psy9598 670 QWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIW 749 (1915)
Q Consensus 670 ~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vw 749 (1915)
+|+|-. +.+.||++++||.+-.-... .+. .........+.++.|...+..+++++. |+.-..|
T Consensus 281 afsP~~----sss~dgt~~~wd~r~~~~~y--------~pr----p~~~~~~~~~~s~~~~~~~~~f~Tgs~-d~ea~n~ 343 (1113)
T KOG0644|consen 281 AFSPRA----SSSDDGTCRIWDARLEPRIY--------VPR----PLKFTEKDLVDSILFENNGDRFLTGSR-DGEARNH 343 (1113)
T ss_pred ccCccc----cCCCCCceEecccccccccc--------CCC----CCCcccccceeeeeccccccccccccC-Ccccccc
Confidence 999864 78899999999987111010 000 011122356777888888888888887 8887777
Q ss_pred ECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCC-CCE
Q psy9598 750 DAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPD-GTT 828 (1915)
Q Consensus 750 D~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpd-g~~ 828 (1915)
.+.. +..|...+.-+.++.....+.+++-.+..+++|++.+|.. +..+ ..+...++.+.++|- ...
T Consensus 344 e~~~------l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l--~H~l-----~ghsd~~yvLd~Hpfn~ri 410 (1113)
T KOG0644|consen 344 EFEQ------LAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQL--LHNL-----MGHSDEVYVLDVHPFNPRI 410 (1113)
T ss_pred hhhH------hhhhccceEEEeccccccccceeeeeeeEeeeeecccchh--hhhh-----cccccceeeeeecCCCcHh
Confidence 6532 2233333333333332345777888899999999999877 3333 356678899999994 455
Q ss_pred EEEEeCCCeEEEEeCCCCcccccC--CC----ceeecCCCCeee-ecCCCc
Q psy9598 829 CALTDSYGHLLVYGLGGFKRPQNI--PR----ELFFHTDYRTLN-RPNGLF 872 (1915)
Q Consensus 829 Lasg~~dG~I~Iwdl~s~~~~~~l--~~----~~~F~~d~~~Lv-~~~~~~ 872 (1915)
..+++.||...|||+..|.+++.. +. .-.|++||..++ .+..+.
T Consensus 411 ~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgq 461 (1113)
T KOG0644|consen 411 AMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQ 461 (1113)
T ss_pred hhhccCCCceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCCc
Confidence 668899999999999988765432 21 467999998776 555554
|
|
| >KOG0649|consensus | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.4e-13 Score=145.11 Aligned_cols=231 Identities=15% Similarity=0.178 Sum_probs=162.8
Q ss_pred ceEEEEECCCCcEEEEEeCCCeEEEEEecCC-------CCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEc
Q psy9598 620 HILCSSFSPGGLFLATGSGDHHVRVYKMDGV-------DSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYY 692 (1915)
Q Consensus 620 ~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~-------~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl 692 (1915)
.|..-+++|.+++|++|..+|.|.++.+... .....+....+|.++|+.++|+ ..+|++|+ ||.|+-|..
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W 88 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEW 88 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEeee
Confidence 4566689999999999999999999998532 2234555668999999999998 33566655 599999976
Q ss_pred cCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCCCeEEEEE
Q psy9598 693 KCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLES 772 (1915)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~ 772 (1915)
+....... .................-..|+++.+.|...-|+++++ |+.++.||+.+|+...+++||++.|.++.-
T Consensus 89 ~E~~es~~---~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgG-D~~~y~~dlE~G~i~r~~rGHtDYvH~vv~ 164 (325)
T KOG0649|consen 89 NEEEESLA---TKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGG-DGVIYQVDLEDGRIQREYRGHTDYVHSVVG 164 (325)
T ss_pred hhhhhhcc---chhhhhhcCccccCcccCCccceeEeccCCCcEEEecC-CeEEEEEEecCCEEEEEEcCCcceeeeeee
Confidence 54321000 00000000111111223467899999998888888887 999999999999999999999999999987
Q ss_pred ccCCCCEEEEEecCceEEEEECCCCccccceeeeee-----ecCCCCcceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc
Q psy9598 773 HPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNI-----VEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGGFK 847 (1915)
Q Consensus 773 sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~-----~~~~~~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl~s~~ 847 (1915)
-. ....++||+.||+++|||..++++ +..+... +..+-...|-+++ -+..+|+||+. -.+.+|.+.+.+
T Consensus 165 R~-~~~qilsG~EDGtvRvWd~kt~k~--v~~ie~yk~~~~lRp~~g~wigala--~~edWlvCGgG-p~lslwhLrsse 238 (325)
T KOG0649|consen 165 RN-ANGQILSGAEDGTVRVWDTKTQKH--VSMIEPYKNPNLLRPDWGKWIGALA--VNEDWLVCGGG-PKLSLWHLRSSE 238 (325)
T ss_pred cc-cCcceeecCCCccEEEEeccccce--eEEeccccChhhcCcccCceeEEEe--ccCceEEecCC-CceeEEeccCCC
Confidence 44 455689999999999999999988 5544321 1111112344444 45567887766 589999999988
Q ss_pred ccccCCC-----ceeecCCCC
Q psy9598 848 RPQNIPR-----ELFFHTDYR 863 (1915)
Q Consensus 848 ~~~~l~~-----~~~F~~d~~ 863 (1915)
+...+|- .+.|-.|..
T Consensus 239 ~t~vfpipa~v~~v~F~~d~v 259 (325)
T KOG0649|consen 239 STCVFPIPARVHLVDFVDDCV 259 (325)
T ss_pred ceEEEecccceeEeeeecceE
Confidence 8777654 345655543
|
|
| >KOG1310|consensus | Back alignment and domain information |
|---|
Probab=99.54 E-value=6.4e-14 Score=164.79 Aligned_cols=181 Identities=18% Similarity=0.211 Sum_probs=138.5
Q ss_pred EEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEe-ecCCCCeEEEEeccCccCCCcEEEEEeCCCeE
Q psy9598 510 LLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVL-VGHQGIITGVNFCPLEVNGFNYLASTSTDGCI 588 (1915)
Q Consensus 510 ~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l-~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI 588 (1915)
+.+.|.||++.|+||.|+.+|.+|+|||.|-.|.|||.-..++++.+ .||.+.|+++.|.|.. +..++++|+.|..|
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~t--nnriv~sgAgDk~i 119 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYT--NNRIVLSGAGDKLI 119 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccC--CCeEEEeccCcceE
Confidence 44578999999999999999999999999999999999988888877 4899999999999976 67899999999999
Q ss_pred EEEecccCccccceeccCccccccccCCCCCceEEEEECCCC-cEEEEEeCCCeEEEEEecCCCCCce-------eEEec
Q psy9598 589 GFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGG-LFLATGSGDHHVRVYKMDGVDSPLG-------ILEVE 660 (1915)
Q Consensus 589 ~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg-~~Lasgs~Dg~I~IwDl~~~~~~~~-------i~~l~ 660 (1915)
+++|+.....-.. -+.......-+..|...|..++..|++ ..+.+++.||+|+-||++....... +..+.
T Consensus 120 ~lfdl~~~~~~~~--d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~ 197 (758)
T KOG1310|consen 120 KLFDLDSSKEGGM--DHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYN 197 (758)
T ss_pred EEEeccccccccc--ccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhc
Confidence 9999985322110 011111222344667888889999988 7889999999999999964221111 11111
Q ss_pred cCCCCeeEEEEcCCC-CEEEEEeCCCcEEEEEccC
Q psy9598 661 EHSDKVDSIQWSHSH-LRFVSGSRDGTALIWYYKC 694 (1915)
Q Consensus 661 ~h~~~V~sl~fspdg-~~L~sgs~DG~I~IWDl~~ 694 (1915)
..--...|+.++|.. .+|++|+.|-.+++||.+.
T Consensus 198 ~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr 232 (758)
T KOG1310|consen 198 PQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRR 232 (758)
T ss_pred hhhheeeeeeecCCCCceEEecCCCchhhhhhhhh
Confidence 122345788888875 4889999999999999653
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.5e-12 Score=157.47 Aligned_cols=341 Identities=12% Similarity=0.110 Sum_probs=210.0
Q ss_pred CEE-EEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEE
Q psy9598 489 EVI-VTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVN 567 (1915)
Q Consensus 489 ~~L-aTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~ 567 (1915)
+++ ++-..+|.|.|.|..+.+.+..+..+...-..+.|++||+++++++.||.|.++|+.+++.+..+.... ...+++
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~i~ 84 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRGIA 84 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEEEE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-CcceEE
Confidence 344 455568999999999999999998655544567899999999999999999999999999999987544 457899
Q ss_pred eccCccCCCcEEEEEe-CCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeC-CCeEEEE
Q psy9598 568 FCPLEVNGFNYLASTS-TDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSG-DHHVRVY 645 (1915)
Q Consensus 568 fsp~~~~d~~~L~sgs-~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~-Dg~I~Iw 645 (1915)
++++ ++++++++ ..+.|.++|..+.+.+..+....... ......+..+..++....+++.-. .+.|.+.
T Consensus 85 ~s~D----G~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~-----~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vV 155 (369)
T PF02239_consen 85 VSPD----GKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPV-----DGPESRVAAIVASPGRPEFVVNLKDTGEIWVV 155 (369)
T ss_dssp E--T----TTEEEEEEEETTEEEEEETTT--EEEEEE--EE-T-----TTS---EEEEEE-SSSSEEEEEETTTTEEEEE
T ss_pred EcCC----CCEEEEEecCCCceeEeccccccceeecccccccc-----cccCCCceeEEecCCCCEEEEEEccCCeEEEE
Confidence 9984 47777665 68999999998887655544331100 002356778888888875555544 4788777
Q ss_pred EecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEE-eCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccE
Q psy9598 646 KMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSG-SRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKV 724 (1915)
Q Consensus 646 Dl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sg-s~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V 724 (1915)
|.... ....+. ............|+|++++|+++ .....|-++|..++...... +..................+.+
T Consensus 156 dy~d~-~~~~~~-~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i-~~g~~p~~~~~~~~php~~g~v 232 (369)
T PF02239_consen 156 DYSDP-KNLKVT-TIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALI-DTGKKPHPGPGANFPHPGFGPV 232 (369)
T ss_dssp ETTTS-SCEEEE-EEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEE-E-SSSBEETTEEEEEETTTEEE
T ss_pred Eeccc-ccccee-eecccccccccccCcccceeeecccccceeEEEeeccceEEEEe-eccccccccccccccCCCcceE
Confidence 86433 222222 22344567788999999987765 46678999999988755432 1111000000000001111223
Q ss_pred EEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEE----ecCceEEEEECCCCccc
Q psy9598 725 TMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSA----GHDGLIIIWDILSSKQR 800 (1915)
Q Consensus 725 ~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSg----s~DG~I~IWdl~s~~~~ 800 (1915)
+.. ...+.+.++..+ ...+.+||..+.+.+..+....++ ..+..|| ++.+|.+. ...++|.|+|..+.+.
T Consensus 233 w~~--~~~~~~~~~~ig-~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP-~s~~vwvd~~~~~~~~~v~viD~~tl~~- 306 (369)
T PF02239_consen 233 WAT--SGLGYFAIPLIG-TDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHP-DSRYVWVDTFLNPDADTVQVIDKKTLKV- 306 (369)
T ss_dssp EEE--EBSSSSEEEEEE---TTT-STTTBTSEEEEEE-SSSS---EE--T-T-SEEEEE-TT-SSHT-EEEEECCGTEE-
T ss_pred Eee--ccccceeccccc-CCccccchhhcCeEEEEEECCCCc-ceeecCC-CCccEEeeccCCCCCceEEEEECcCcce-
Confidence 222 223444434444 456778999999999999987777 7788899 88888887 4458999999988754
Q ss_pred cceeeeeeecCCCCcceEEEEEcCCCCEEEEEe--CCCeEEEEeCCCCcccccCC
Q psy9598 801 GYKWFHNIVEGQGEGALFDGKWSPDGTTCALTD--SYGHLLVYGLGGFKRPQNIP 853 (1915)
Q Consensus 801 ~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~--~dG~I~Iwdl~s~~~~~~l~ 853 (1915)
...+. . .....+..+.|++||..+.++. .+|.|.|||..+.+....++
T Consensus 307 -~~~i~---~-~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 307 -VKTIT---P-GPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp -EE-HH---H-HHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred -eEEEe---c-cCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence 33332 1 1113488999999999766554 44579999999999888777
|
... |
| >KOG2110|consensus | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.5e-12 Score=148.63 Aligned_cols=244 Identities=15% Similarity=0.215 Sum_probs=173.5
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCC--eEEEEeccc
Q psy9598 518 SGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDG--CIGFWKYKL 595 (1915)
Q Consensus 518 ~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~Dg--tI~iWDl~~ 595 (1915)
...|..+.|+.+...|..|+.|| .+++.................|.-+-|+. .+++..+.+. .++++++..
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSS------SLvaiV~~~qpr~Lkv~~~Kk 77 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSS------SLVAIVSIKQPRKLKVVHFKK 77 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeeccc------ceeEEEecCCCceEEEEEccc
Confidence 44677888999999999999998 47888765444322222334566667765 5666665544 488888887
Q ss_pred CccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCC
Q psy9598 596 DIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSH 675 (1915)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg 675 (1915)
+..+....+. ..|.++.++.+ .|+++-.+ .|+|||+....-...+.....+...+.++++++.+
T Consensus 78 ~~~ICe~~fp-------------t~IL~VrmNr~--RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n 141 (391)
T KOG2110|consen 78 KTTICEIFFP-------------TSILAVRMNRK--RLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNAN 141 (391)
T ss_pred CceEEEEecC-------------CceEEEEEccc--eEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCC
Confidence 7666666555 56788888654 56665554 49999995433222222222333334444333333
Q ss_pred CEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCc
Q psy9598 676 LRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGD 755 (1915)
Q Consensus 676 ~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~ 755 (1915)
.+|+-- ++...|.|.|||+.+.+
T Consensus 142 ~ylAyp---------------------------------------------------------~s~t~GdV~l~d~~nl~ 164 (391)
T KOG2110|consen 142 CYLAYP---------------------------------------------------------GSTTSGDVVLFDTINLQ 164 (391)
T ss_pred ceEEec---------------------------------------------------------CCCCCceEEEEEcccce
Confidence 333221 11125789999999999
Q ss_pred eEEEeeCCCCCeEEEEEccCCCCEEEEEecCce-EEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEEeC
Q psy9598 756 LVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGL-IIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDS 834 (1915)
Q Consensus 756 ~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~-I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~ 834 (1915)
.+..+.+|.+.+-+|+|++ +|.+|||++..|+ |||+.+.+|+. +..|. .|.....|++++|+||+.+|++++.
T Consensus 165 ~v~~I~aH~~~lAalafs~-~G~llATASeKGTVIRVf~v~~G~k--l~eFR---RG~~~~~IySL~Fs~ds~~L~~sS~ 238 (391)
T KOG2110|consen 165 PVNTINAHKGPLAALAFSP-DGTLLATASEKGTVIRVFSVPEGQK--LYEFR---RGTYPVSIYSLSFSPDSQFLAASSN 238 (391)
T ss_pred eeeEEEecCCceeEEEECC-CCCEEEEeccCceEEEEEEcCCccE--eeeee---CCceeeEEEEEEECCCCCeEEEecC
Confidence 9999999999999999999 9999999999997 58999999888 55554 4555578999999999999999999
Q ss_pred CCeEEEEeCCCCc
Q psy9598 835 YGHLLVYGLGGFK 847 (1915)
Q Consensus 835 dG~I~Iwdl~s~~ 847 (1915)
.++|+||.+....
T Consensus 239 TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 239 TETVHIFKLEKVS 251 (391)
T ss_pred CCeEEEEEecccc
Confidence 9999999998643
|
|
| >KOG0771|consensus | Back alignment and domain information |
|---|
Probab=99.53 E-value=1e-13 Score=161.17 Aligned_cols=205 Identities=19% Similarity=0.199 Sum_probs=157.4
Q ss_pred EEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecC
Q psy9598 480 FCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGH 559 (1915)
Q Consensus 480 ~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h 559 (1915)
.+|+|+.+|..|+||+.||+++||++.+...+.....|.+.|.+|.|+|||.+|++-+.| ..+||++.+|.+++.....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF 226 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence 789999999999999999999999998988888888999999999999999999999999 8999999999877766532
Q ss_pred --CCCeEEEEeccCccCCCcEEEE-EeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEE
Q psy9598 560 --QGIITGVNFCPLEVNGFNYLAS-TSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATG 636 (1915)
Q Consensus 560 --~~~V~sl~fsp~~~~d~~~L~s-gs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasg 636 (1915)
.-....+.|+.+.....-+|++ ...-+.|+.|++.....-..+.. .........|.|++++.+|++++.|
T Consensus 227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~-------~~~~~~~~siSsl~VS~dGkf~AlG 299 (398)
T KOG0771|consen 227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRL-------RKKIKRFKSISSLAVSDDGKFLALG 299 (398)
T ss_pred ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccch-------hhhhhccCcceeEEEcCCCcEEEEe
Confidence 2356677887754321222222 33446677777654332111111 1111223579999999999999999
Q ss_pred eCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccC
Q psy9598 637 SGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKC 694 (1915)
Q Consensus 637 s~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~ 694 (1915)
+.||.|-|++..... .....-..|...|+.|.|+|+.+++++.+.|..+.|..+.-
T Consensus 300 T~dGsVai~~~~~lq--~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 300 TMDGSVAIYDAKSLQ--RLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred ccCCcEEEEEeceee--eeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 999999999984322 22233467999999999999999999999999998886654
|
|
| >KOG4497|consensus | Back alignment and domain information |
|---|
Probab=99.52 E-value=7.5e-13 Score=147.80 Aligned_cols=326 Identities=16% Similarity=0.194 Sum_probs=209.7
Q ss_pred CCcEEEEEEcCCCCEEEEE-ECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCE-EEEEeCCCcEEEEECCCCceE
Q psy9598 476 LSAVFCVLFDKLGEVIVTG-ADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNIL-LAAGTVDKTIRIWNLQTLAPI 553 (1915)
Q Consensus 476 ~~~V~~vafspdg~~LaTG-s~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~-LaSgs~DgtIrVWDl~tg~~~ 553 (1915)
.+.|.-+.|..+.-+++++ ..++.|.+|++...+-...+....+++.+++|||||+. |.+...+-.|.||.+.+.+..
T Consensus 48 ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~ 127 (447)
T KOG4497|consen 48 LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGY 127 (447)
T ss_pred HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeE
Confidence 4677788999888777665 56889999999888888888888899999999999964 556667899999999887655
Q ss_pred EEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEE
Q psy9598 554 SVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFL 633 (1915)
Q Consensus 554 ~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~L 633 (1915)
..-. ....+..++|+|+ +++.+.++.-...-+.++..-+ .-.....+...+-..+.+.|+|||+.|
T Consensus 128 ~~~~-pK~~~kg~~f~~d----g~f~ai~sRrDCkdyv~i~~c~---------~W~ll~~f~~dT~DltgieWsPdg~~l 193 (447)
T KOG4497|consen 128 LLPH-PKTNVKGYAFHPD----GQFCAILSRRDCKDYVQISSCK---------AWILLKEFKLDTIDLTGIEWSPDGNWL 193 (447)
T ss_pred Eecc-cccCceeEEECCC----CceeeeeecccHHHHHHHHhhH---------HHHHHHhcCCCcccccCceECCCCcEE
Confidence 4332 2345689999994 4777777653221111111100 001111122223556789999999877
Q ss_pred EEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEE--------------
Q psy9598 634 ATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRF-------------- 699 (1915)
Q Consensus 634 asgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~-------------- 699 (1915)
|+ ||.- -...+. .....-.+..++|+|.+++|++|+.|+.++|-+--+-+...
T Consensus 194 aV---------wd~~---Leykv~-aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~ 260 (447)
T KOG4497|consen 194 AV---------WDNV---LEYKVY-AYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLH 260 (447)
T ss_pred EE---------ecch---hhheee-eeeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhh
Confidence 64 5430 001111 11123467889999999999999999998875422111000
Q ss_pred ---------eeeccc------c---------------------cCCCCccccccccccccEEEEEECCCCCEEEEEEe-c
Q psy9598 700 ---------IRLDMN------T---------------------CLPHTKETSDETNKKIKVTMVAWDASDRWVITAIN-F 742 (1915)
Q Consensus 700 ---------~~~~~~------~---------------------~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~-~ 742 (1915)
..+.+. + .................+..++|++|..|+++-.. .
T Consensus 261 ~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~ 340 (447)
T KOG4497|consen 261 LLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKY 340 (447)
T ss_pred hhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCC
Confidence 000000 0 00011111223334567888999999999887653 2
Q ss_pred CCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEE
Q psy9598 743 NFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKW 822 (1915)
Q Consensus 743 Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vaf 822 (1915)
-+.+.+||++..++...+. ...+|....|+| ....|+.+.....+++|....... +. ..+.+ -.|..++|
T Consensus 341 PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP-~~prL~vctg~srLY~W~psg~~~--V~-----vP~~G-F~i~~l~W 410 (447)
T KOG4497|consen 341 PNALWLWDLQNLKLHAVLI-QKHPIRAFEWDP-GRPRLVVCTGKSRLYFWAPSGPRV--VG-----VPKKG-FNIQKLQW 410 (447)
T ss_pred CceEEEEechhhhhhhhhh-hccceeEEEeCC-CCceEEEEcCCceEEEEcCCCceE--Ee-----cCCCC-ceeeeEEe
Confidence 3579999998877655553 456799999999 444455555556799998866433 11 11122 57999999
Q ss_pred cCCCCEEEEEeCCCeE
Q psy9598 823 SPDGTTCALTDSYGHL 838 (1915)
Q Consensus 823 Spdg~~Lasg~~dG~I 838 (1915)
..+|..|+.++.|...
T Consensus 411 ~~~g~~i~l~~kDafc 426 (447)
T KOG4497|consen 411 LQPGEFIVLCGKDAFC 426 (447)
T ss_pred cCCCcEEEEEcCCceE
Confidence 9999999999988543
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=6.4e-13 Score=169.31 Aligned_cols=232 Identities=16% Similarity=0.118 Sum_probs=164.5
Q ss_pred CCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCC---CcEEEEECCCCce--EEEeecCCCCeEEEEeccC
Q psy9598 497 DLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVD---KTIRIWNLQTLAP--ISVLVGHQGIITGVNFCPL 571 (1915)
Q Consensus 497 Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~D---gtIrVWDl~tg~~--~~~l~~h~~~V~sl~fsp~ 571 (1915)
+..|.|||..... ...+..|...|.+++|+|||+.|+.++.+ ..|++||+.++.. +..+.+| ..+++|+|+
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPD 258 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPD 258 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCC
Confidence 4689999985544 56677888899999999999999987754 4699999998764 3333333 447899994
Q ss_pred ccCCCcEEEEE-eCCCeEEEEe--cccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEe-CCCeEEEEEe
Q psy9598 572 EVNGFNYLAST-STDGCIGFWK--YKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGS-GDHHVRVYKM 647 (1915)
Q Consensus 572 ~~~d~~~L~sg-s~DgtI~iWD--l~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs-~Dg~I~IwDl 647 (1915)
+..|+++ +.+|.+.||. +.++.. . .+..+...+.+.+|+|+|..|+.++ .+|.+.||++
T Consensus 259 ----G~~La~~~~~~g~~~Iy~~d~~~~~~-~------------~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~ 321 (429)
T PRK01742 259 ----GSRLAFASSKDGVLNIYVMGANGGTP-S------------QLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRM 321 (429)
T ss_pred ----CCEEEEEEecCCcEEEEEEECCCCCe-E------------eeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEE
Confidence 4666665 4688777664 443321 1 1112335577899999999777655 5788899988
Q ss_pred cCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEE
Q psy9598 648 DGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMV 727 (1915)
Q Consensus 648 ~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v 727 (1915)
+........ + .+.. .+++|+|+|.+|+.++.++ +.+||+.++.+...... .....+
T Consensus 322 ~~~~~~~~~--l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~------------------~~~~~~ 377 (429)
T PRK01742 322 SASGGGASL--V-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSST------------------FLDESP 377 (429)
T ss_pred ECCCCCeEE--e-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCC------------------CCCCCc
Confidence 533222221 2 3333 4578999999998888765 55699988764432100 011347
Q ss_pred EECCCCCEEEEEEecCCeEEEEEC--CCCceEEEeeCCCCCeEEEEEcc
Q psy9598 728 AWDASDRWVITAINFNFQIKIWDA--FNGDLVQVLKGHTNEVFVLESHP 774 (1915)
Q Consensus 728 a~spdg~~L~t~s~~Dg~I~vwD~--~tg~~i~~l~gH~~~V~sl~~sp 774 (1915)
+|+|+|.+|++++. ++.+.+|.+ .+|..+..+.+|.+.+..++|+|
T Consensus 378 ~~sPdG~~i~~~s~-~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp 425 (429)
T PRK01742 378 SISPNGIMIIYSST-QGLGKVLQLVSADGRFKARLPGSDGQVKFPAWSP 425 (429)
T ss_pred eECCCCCEEEEEEc-CCCceEEEEEECCCCceEEccCCCCCCCCcccCC
Confidence 89999999999988 888888775 36888999999999899999998
|
|
| >KOG1240|consensus | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.2e-12 Score=167.13 Aligned_cols=272 Identities=17% Similarity=0.210 Sum_probs=184.1
Q ss_pred EECCCCcEEEEEeCCCCCEEEEEEeCCC-CEEEEEeCCCcEEEEECCC-------CceEEEeecCCCCeEEEEeccCccC
Q psy9598 503 WRARDGKLLATLRGCSGEISDIAIDNRN-ILLAAGTVDKTIRIWNLQT-------LAPISVLVGHQGIITGVNFCPLEVN 574 (1915)
Q Consensus 503 Wd~~tg~~~~~l~gH~~~I~~Lafspdg-~~LaSgs~DgtIrVWDl~t-------g~~~~~l~~h~~~V~sl~fsp~~~~ 574 (1915)
|++ .|.++..+.-|...|..++.++.. .+++|||.||+|+||++.. .+...++......+.++.+++
T Consensus 1034 W~p-~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~---- 1108 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCG---- 1108 (1431)
T ss_pred CCc-cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEecc----
Confidence 664 688999999999999999988765 9999999999999999863 123334444567889999988
Q ss_pred CCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCC-Cc-EEEEEeCCCeEEEEEecCCCC
Q psy9598 575 GFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPG-GL-FLATGSGDHHVRVYKMDGVDS 652 (1915)
Q Consensus 575 d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspd-g~-~Lasgs~Dg~I~IwDl~~~~~ 652 (1915)
+++.+|+++.||.|.+.++...... ...... ............|.+-+|... +. .|+.+...+.|..||++....
T Consensus 1109 ~~~~~Av~t~DG~v~~~~id~~~~~-~~~~~~--~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~ 1185 (1431)
T KOG1240|consen 1109 NGDQFAVSTKDGSVRVLRIDHYNVS-KRVATQ--VRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHD 1185 (1431)
T ss_pred CCCeEEEEcCCCeEEEEEccccccc-cceeee--eecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhh
Confidence 4589999999999999998763111 111000 000011111223444444432 33 688888899999999954332
Q ss_pred CceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECC-
Q psy9598 653 PLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDA- 731 (1915)
Q Consensus 653 ~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~sp- 731 (1915)
.. ........+.|++++.+|.+.++++|+..|.+.+||++-+..+.. -..++...+..++.++
T Consensus 1186 ~w-~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~s---------------w~~P~~~~i~~v~~~~~ 1249 (1431)
T KOG1240|consen 1186 AW-RLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILS---------------WEHPARAPIRHVWLCPT 1249 (1431)
T ss_pred HH-hhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeec---------------ccCcccCCcceEEeecc
Confidence 22 223344568899999999999999999999999999986653221 1122334555555554
Q ss_pred --CCCEEEEEEe-cCCeEEEEECCCCceEEEeeCCCC-------------------CeEEEEEccCCCCEEEEEecCceE
Q psy9598 732 --SDRWVITAIN-FNFQIKIWDAFNGDLVQVLKGHTN-------------------EVFVLESHPFDSRVLLSAGHDGLI 789 (1915)
Q Consensus 732 --dg~~L~t~s~-~Dg~I~vwD~~tg~~i~~l~gH~~-------------------~V~sl~~sp~dg~~LaSgs~DG~I 789 (1915)
....+++++. ..+.|.+|++.+|.+..++-...+ .....++.- .+.++++||.|+.|
T Consensus 1250 ~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~-~~~~~ltggsd~kI 1328 (1431)
T KOG1240|consen 1250 YPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCE-KNGFLLTGGSDMKI 1328 (1431)
T ss_pred CCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeeccc-CCceeeecCCccce
Confidence 3445555554 578899999999987776653311 111122222 46689999999999
Q ss_pred EEEECCCCcc
Q psy9598 790 IIWDILSSKQ 799 (1915)
Q Consensus 790 ~IWdl~s~~~ 799 (1915)
+.||......
T Consensus 1329 R~wD~~~p~~ 1338 (1431)
T KOG1240|consen 1329 RKWDPTRPEI 1338 (1431)
T ss_pred eeccCCCccc
Confidence 9999976554
|
|
| >KOG1272|consensus | Back alignment and domain information |
|---|
Probab=99.51 E-value=8e-14 Score=162.11 Aligned_cols=266 Identities=14% Similarity=0.155 Sum_probs=200.8
Q ss_pred cEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEee
Q psy9598 478 AVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLV 557 (1915)
Q Consensus 478 ~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~ 557 (1915)
.-+.+.|+.+|++|+.|+.-|.|-.+|+.++.+...+.. ...|.++.|-.+.+++|++- ...+.|||- .|..++.+.
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD~-~GtElHClk 207 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV-METVRDVTFLHNEQFFAVAQ-KKYVYVYDN-NGTELHCLK 207 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeecccceeeeeeeh-hhhhhhhhhhcchHHHHhhh-hceEEEecC-CCcEEeehh
Confidence 345788999999999999999999999999999988863 45799999999888888875 568999995 477888887
Q ss_pred cCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEe
Q psy9598 558 GHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGS 637 (1915)
Q Consensus 558 ~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs 637 (1915)
.| ..|..+.|.|.. .+|++++..|.++.-|+.+|..+..+.. +.+.+..++-+|-...+-+|.
T Consensus 208 ~~-~~v~rLeFLPyH----fLL~~~~~~G~L~Y~DVS~GklVa~~~t------------~~G~~~vm~qNP~NaVih~Gh 270 (545)
T KOG1272|consen 208 RH-IRVARLEFLPYH----FLLVAASEAGFLKYQDVSTGKLVASIRT------------GAGRTDVMKQNPYNAVIHLGH 270 (545)
T ss_pred hc-Cchhhhcccchh----heeeecccCCceEEEeechhhhhHHHHc------------cCCccchhhcCCccceEEEcC
Confidence 65 468999999976 7889999999999999999976554433 346778888999888999999
Q ss_pred CCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCcccccc
Q psy9598 638 GDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDE 717 (1915)
Q Consensus 638 ~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~ 717 (1915)
.+|+|.+|.. .....+..+..|.++|.+|++.++|.+++|++.|..|+|||++.........
T Consensus 271 snGtVSlWSP---~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~--------------- 332 (545)
T KOG1272|consen 271 SNGTVSLWSP---NSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYR--------------- 332 (545)
T ss_pred CCceEEecCC---CCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceee---------------
Confidence 9999999987 3445566677899999999999999999999999999999998765222110
Q ss_pred ccccccEEEEEECCCCCEEEEEEecCCeEEEEEC-CCC--ceEEEeeCC--CCCeEEEEEccCCCCEEEEEecCc
Q psy9598 718 TNKKIKVTMVAWDASDRWVITAINFNFQIKIWDA-FNG--DLVQVLKGH--TNEVFVLESHPFDSRVLLSAGHDG 787 (1915)
Q Consensus 718 ~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~-~tg--~~i~~l~gH--~~~V~sl~~sp~dg~~LaSgs~DG 787 (1915)
.......++||..|- |+ ++. ...|.||-- ..+ ..-.-+-.| .+.|..|.|+| -..+|-.|..-|
T Consensus 333 --tp~~a~~ls~Sqkgl-LA-~~~-G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP-~EDvLGIGH~~G 401 (545)
T KOG1272|consen 333 --TPHPASNLSLSQKGL-LA-LSY-GDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCP-YEDVLGIGHAGG 401 (545)
T ss_pred --cCCCccccccccccc-ee-eec-CCeeeeehhhhcCCCCCCcchhhhccCcccccceecc-HHHeeeccccCC
Confidence 123445677776553 33 333 457899952 221 111111122 34788888888 555555554333
|
|
| >COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1e-14 Score=180.38 Aligned_cols=173 Identities=25% Similarity=0.370 Sum_probs=144.7
Q ss_pred ChHHHHhhcccccCCHHHHHHHHHHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHhcCCCCCCCcchhhhhccccCCCCCc
Q psy9598 1 LTTLRARFQNRFYRRITSAQFDVRYLAANAEKFNEPHSNIVKYARIITDLLLRIIKEPNPVDVPVVYHELLQNYETSSSE 80 (1915)
Q Consensus 1 L~tI~~kl~~~~Y~~~~ef~~D~~li~~Na~~yN~p~s~I~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (1915)
|.||++||+++.|.++++|+.||+|||.||++||+|+|.|+.+|+.|.+++.+.|..++...+...+..- ...
T Consensus 191 L~~i~kkl~~~~Y~s~eef~~D~~lM~~N~~~yN~~~s~v~~~a~~l~~~~~~~i~~~~~~~~~~~~~~~-------~~~ 263 (371)
T COG5076 191 LLTIQKKLKNGRYKSFEEFVSDLNLMFDNCKLYNGPDSSVYVDAKELEKYFLKLIEEIPEEMLELSIKPG-------REE 263 (371)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhccCCCcchhhhhHHHHHHHHHHHHhccccchhhccCcc-------ccc
Confidence 6899999999999999999999999999999999999999999999999999999987765543221000 000
Q ss_pred ccccccccccccccCCCCcchhhhhhhhccccCCchhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCccccCCCcCCH
Q psy9598 81 EEEEEDSKSRQRRVRPTAVTRAQREAMNQKKLKRPFNWKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDL 160 (1915)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~F~~pvd~~~~pdY~~iIk~Pmdl 160 (1915)
+. . +-..++.....+..+|+|+.++.....|+|+++|..+|++
T Consensus 264 -----------~~-----~---------------------~~~~~i~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 306 (371)
T COG5076 264 -----------RE-----E---------------------RESVLITNSQAHVGAWPFLRPVSDEEVPDYYKDIRDPMDL 306 (371)
T ss_pred -----------cc-----c---------------------chhhcccccccccccccccccCCcccccchhhhhhccccc
Confidence 00 0 0112333446667789999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy9598 161 GTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQNKRSKIYIMTTRLSEFAEEHLRRL 218 (1915)
Q Consensus 161 ~ti~~kl~~~~Y~~~~~f~~D~~Lif~N~~~yN~~~~s~i~~~a~~l~~~f~~~~~~~ 218 (1915)
.|.+-++..+.|...++|..|..++|.||..||..- ..++.-+..+..+|...+...
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 363 (371)
T COG5076 307 STKELKLRNNYYRPEETFVRDAKLFFDNCVMYNGEV-TDYYKNANVLEDFVIKKTRLI 363 (371)
T ss_pred ccchhhhhcccCCCccccccccchhhhcccccchhh-hhhhhhccchhhhHhhhhhhh
Confidence 999999999999999999999999999999999955 888888888888888776654
|
|
| >KOG1245|consensus | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.6e-14 Score=197.38 Aligned_cols=95 Identities=39% Similarity=0.642 Sum_probs=91.8
Q ss_pred HHHHHHHHHcCCCCCCCCCCCCCCCCCCccccccCccchhhHHhhhcCCCCCCHHHHHHHHHHHHHHhhhhcCCCCCHHH
Q psy9598 1537 CREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQNKRSKIY 1616 (1915)
Q Consensus 1537 ~~~ll~~l~~~~~s~~F~~pv~~~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~Dv~lif~Na~~yN~~~~s~i~ 1616 (1915)
|..||..|+.|+.||||++||+..++||||+|||+||||+||+.|+..|.|.++.+|..||.|||.||.+||.+ |.|+
T Consensus 1306 ~e~il~e~~~~~~awPFlepVn~~~vp~Y~~IIk~Pmdl~tir~k~~~~~Y~~~eef~~Di~lvf~Nc~~yN~~--s~i~ 1383 (1404)
T KOG1245|consen 1306 CEDILHELVVHKAAWPFLEPVNPKEVPDYYDIIKKPMDLSTIREKLSKGIYPSPEEFATDIELVFDNCETYNED--SEIG 1383 (1404)
T ss_pred HHHHHHHHHHhhhcchhhccCChhhcccHHHHhcChhHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhccc--hhhh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999985 8999
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy9598 1617 IMTTRLSEFAEEHLRRL 1633 (1915)
Q Consensus 1617 ~~a~~l~~~f~~~~~~~ 1633 (1915)
.....|.++|+..|+..
T Consensus 1384 ~ag~~l~~ff~~~~~~~ 1400 (1404)
T KOG1245|consen 1384 RAGTCLRRFFHKRWRKK 1400 (1404)
T ss_pred hhcchHHHHHHHHHHhh
Confidence 99999999999977654
|
|
| >KOG2139|consensus | Back alignment and domain information |
|---|
Probab=99.49 E-value=7e-12 Score=142.19 Aligned_cols=295 Identities=17% Similarity=0.219 Sum_probs=193.2
Q ss_pred CCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEee-cCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCc
Q psy9598 519 GEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLV-GHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDI 597 (1915)
Q Consensus 519 ~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~-~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~ 597 (1915)
..+..++|++.-..+|++..|-+|+||+-.. .+...++ .....|+|++|-|.+ ..-|+.|+..| |+||......
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPls---aselavgCr~g-IciW~~s~tl 173 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLS---ASELAVGCRAG-ICIWSDSRTL 173 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCC---cceeeeeecce-eEEEEcCccc
Confidence 3567789999777789999999999999876 4444444 345789999999964 46888888866 8999765433
Q ss_pred cccce-eccCccccccccCCCCCceEEEEECCCCcEEEEEeC-CCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCC
Q psy9598 598 DISKT-VFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSG-DHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSH 675 (1915)
Q Consensus 598 ~~~~~-~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~-Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg 675 (1915)
..... .............++...|+++.|.+||..+++++. +..|.|||.+.. ....+ ..-..+.++-+.|||+|
T Consensus 174 n~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg-~~~pL--~~~glgg~slLkwSPdg 250 (445)
T KOG2139|consen 174 NANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTG-QKIPL--IPKGLGGFSLLKWSPDG 250 (445)
T ss_pred ccccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCC-Ccccc--cccCCCceeeEEEcCCC
Confidence 22211 000001111112244588999999999999998775 578999999542 22222 23455678899999999
Q ss_pred CEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCC-C
Q psy9598 676 LRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFN-G 754 (1915)
Q Consensus 676 ~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~t-g 754 (1915)
.+|++++-|+..++|.....- .... ..-..+.|...+|+|+|++|+.++. |.-.+|.+.. +
T Consensus 251 d~lfaAt~davfrlw~e~q~w-t~er---------------w~lgsgrvqtacWspcGsfLLf~~s--gsp~lysl~f~~ 312 (445)
T KOG2139|consen 251 DVLFAATCDAVFRLWQENQSW-TKER---------------WILGSGRVQTACWSPCGSFLLFACS--GSPRLYSLTFDG 312 (445)
T ss_pred CEEEEecccceeeeehhcccc-eecc---------------eeccCCceeeeeecCCCCEEEEEEc--CCceEEEEeecC
Confidence 999999999999999644321 1100 1112347899999999999988876 4444454321 1
Q ss_pred c--------------eEEEe------eC---CCCCeEEEEEccCCCCEEEEEecC--------ceEEEEECCCCccccce
Q psy9598 755 D--------------LVQVL------KG---HTNEVFVLESHPFDSRVLLSAGHD--------GLIIIWDILSSKQRGYK 803 (1915)
Q Consensus 755 ~--------------~i~~l------~g---H~~~V~sl~~sp~dg~~LaSgs~D--------G~I~IWdl~s~~~~~~~ 803 (1915)
+ ++..| .+ -.+.+.+++|.| .|.+||+.-.. +.|.+||....-.. ..
T Consensus 313 ~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDp-sGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~v-el 390 (445)
T KOG2139|consen 313 EDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDP-SGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPV-EL 390 (445)
T ss_pred CCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECC-CCCEEEEEEcCCchhhhhhhhhhhhcccccCce-EE
Confidence 0 11111 11 145789999999 89999886543 34667777654331 11
Q ss_pred eeeeeecCCCCcceEEEEEcC---CCCEEEEEeCCCeEEEEeCC
Q psy9598 804 WFHNIVEGQGEGALFDGKWSP---DGTTCALTDSYGHLLVYGLG 844 (1915)
Q Consensus 804 ~~~~~~~~~~~~~V~~vafSp---dg~~Lasg~~dG~I~Iwdl~ 844 (1915)
.+..++.+.+ ..-++|+| +|.+|.++-+.|.+.-|.+.
T Consensus 391 s~cg~i~ge~---P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 391 SYCGMIGGEY---PAYISFGPLKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred EecccccCCC---CceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence 1122333333 34456665 68888888888888888764
|
|
| >KOG1354|consensus | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.6e-12 Score=144.62 Aligned_cols=275 Identities=13% Similarity=0.180 Sum_probs=189.8
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCc-----eEEEeecCC------------CCeEEEEeccCccCCCcEEE
Q psy9598 518 SGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLA-----PISVLVGHQ------------GIITGVNFCPLEVNGFNYLA 580 (1915)
Q Consensus 518 ~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~-----~~~~l~~h~------------~~V~sl~fsp~~~~d~~~L~ 580 (1915)
..-|.+|.|...|.+||+|..+|.|.++.-.... ....++.|. ..|+.|.|++.+ +...++
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~--n~a~FL 102 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDG--NLAEFL 102 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCC--CccEEE
Confidence 4568999999999999999999999998654321 233455554 358889999865 677888
Q ss_pred EEeCCCeEEEEecccCcccc---------------ceecc--Ccc-------ccccccCCCCCceEEEEECCCCcEEEEE
Q psy9598 581 STSTDGCIGFWKYKLDIDIS---------------KTVFH--EPV-------MFNERIRPGNAHILCSSFSPGGLFLATG 636 (1915)
Q Consensus 581 sgs~DgtI~iWDl~~~~~~~---------------~~~~~--~~~-------~~~~~~~~~~~~V~~l~fspdg~~Lasg 636 (1915)
..+.|.+|++|-+....... .+... .+. .......+|...|++++++.|+..++++
T Consensus 103 lstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA 182 (433)
T KOG1354|consen 103 LSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA 182 (433)
T ss_pred EecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec
Confidence 88899999999876432211 00000 000 0001124677889999999999988876
Q ss_pred eCCCeEEEEEecCCCCCceeEEeccCC-----CCeeEEEEcCC-CCEEEEEeCCCcEEEEEccCCceEEeeecccccCCC
Q psy9598 637 SGDHHVRVYKMDGVDSPLGILEVEEHS-----DKVDSIQWSHS-HLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPH 710 (1915)
Q Consensus 637 s~Dg~I~IwDl~~~~~~~~i~~l~~h~-----~~V~sl~fspd-g~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~ 710 (1915)
.|-.|.+|++.-......+..+..+. .-|++..|+|. .+.|+-++..|+|++.|++...+......+......
T Consensus 183 -DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEeped 261 (433)
T KOG1354|consen 183 -DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPED 261 (433)
T ss_pred -cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccC
Confidence 56789999996555555555555543 45888889986 457888889999999999865422111111011111
Q ss_pred CccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEEC-CCCceEEEeeCCCC------------C---eEEEEEcc
Q psy9598 711 TKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDA-FNGDLVQVLKGHTN------------E---VFVLESHP 774 (1915)
Q Consensus 711 ~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~-~tg~~i~~l~gH~~------------~---V~sl~~sp 774 (1915)
.............|..+.|+.+|+||++-.. -+|+|||+ ...+++.++..|.. . -+.++|+.
T Consensus 262 p~~rsffseiIsSISDvKFs~sGryilsRDy--ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg 339 (433)
T KOG1354|consen 262 PSSRSFFSEIISSISDVKFSHSGRYILSRDY--LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSG 339 (433)
T ss_pred CcchhhHHHHhhhhhceEEccCCcEEEEecc--ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcC
Confidence 1111223334567888999999999998753 68999999 45677777777642 2 25678988
Q ss_pred CCCCEEEEEecCceEEEEECCCCc
Q psy9598 775 FDSRVLLSAGHDGLIIIWDILSSK 798 (1915)
Q Consensus 775 ~dg~~LaSgs~DG~I~IWdl~s~~ 798 (1915)
++.+++|||....++++++..|.
T Consensus 340 -~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 340 -NDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred -CcceEecccccceEEEecCCCCc
Confidence 88899999999999999976554
|
|
| >KOG2315|consensus | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.7e-11 Score=145.25 Aligned_cols=324 Identities=17% Similarity=0.164 Sum_probs=209.4
Q ss_pred CCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEE-----eCC-----CcEEEE
Q psy9598 476 LSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAG-----TVD-----KTIRIW 545 (1915)
Q Consensus 476 ~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSg-----s~D-----gtIrVW 545 (1915)
...++..++|++|+++|.+. +..|+|++..++..+.+...- .+.+|.|+|-|.+|.+- ..+ -.+.+|
T Consensus 34 ~~~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~~lt~~~~--~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~ 110 (566)
T KOG2315|consen 34 SRPCNVFAYSNNGRLFAYSD-NQVVKVFEIATLKVVLCVELK--KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVY 110 (566)
T ss_pred CCcceeEEEcCCCcEEEEEc-CCeEEEEEccCCcEEEEeccc--eeeeeeecccccccccccccccccCCCCCCCceeee
Confidence 34477888999998888765 559999999888655444432 78999999999998763 112 357799
Q ss_pred ECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEE
Q psy9598 546 NLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSS 625 (1915)
Q Consensus 546 Dl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~ 625 (1915)
++.++.....+......-+++.|+.+. .|++--..+.|.||++.....+... -|...|..+.
T Consensus 111 ~vet~~~~s~~q~k~Q~~W~~qfs~dE-----sl~arlv~nev~f~~~~~f~~~~~k-------------l~~~~i~~f~ 172 (566)
T KOG2315|consen 111 NVETGVQRSQIQKKMQNGWVPQFSIDE-----SLAARLVSNEVQFYDLGSFKTIQHK-------------LSVSGITMLS 172 (566)
T ss_pred eeccceehhheehhhhcCcccccccch-----hhhhhhhcceEEEEecCCccceeee-------------eeccceeeEE
Confidence 999966655555433222788888853 3444444567999998764321111 1235678888
Q ss_pred ECCCCc--EEEE-----EeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCE-EE--EEeCCC---------c
Q psy9598 626 FSPGGL--FLAT-----GSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLR-FV--SGSRDG---------T 686 (1915)
Q Consensus 626 fspdg~--~Las-----gs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~-L~--sgs~DG---------~ 686 (1915)
+||.+. +||+ +|.-+.|+||.+.-......+..-.-....-..+.|.+-|.- |+ +..-|. +
T Consensus 173 lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~ 252 (566)
T KOG2315|consen 173 LSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQT 252 (566)
T ss_pred ecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccce
Confidence 888743 4443 456678999988411111111110111222234667777762 22 222232 4
Q ss_pred EEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEE-EecCCeEEEEECCCCceEEEeeCCCC
Q psy9598 687 ALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITA-INFNFQIKIWDAFNGDLVQVLKGHTN 765 (1915)
Q Consensus 687 I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~-s~~Dg~I~vwD~~tg~~i~~l~gH~~ 765 (1915)
+++.++....+.. .....++|.+++|+++|+-++++ |-.-..+.|||++ +.++..+ ..+
T Consensus 253 Lyll~t~g~s~~V-----------------~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df--~eg 312 (566)
T KOG2315|consen 253 LYLLATQGESVSV-----------------PLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF--PEG 312 (566)
T ss_pred EEEEEecCceEEE-----------------ecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeC--CCC
Confidence 5555554222111 12246889999999999765544 3346689999984 6666655 355
Q ss_pred CeEEEEEccCCCCEEEEEec---CceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEEeC------CC
Q psy9598 766 EVFVLESHPFDSRVLLSAGH---DGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDS------YG 836 (1915)
Q Consensus 766 ~V~sl~~sp~dg~~LaSgs~---DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~------dG 836 (1915)
+=+++-|+| .|++|+.+|. -|.|-|||+.+.++ +..+. ...-+-+.|+|||.+|++++. |+
T Consensus 313 pRN~~~fnp-~g~ii~lAGFGNL~G~mEvwDv~n~K~--i~~~~-------a~~tt~~eW~PdGe~flTATTaPRlrvdN 382 (566)
T KOG2315|consen 313 PRNTAFFNP-HGNIILLAGFGNLPGDMEVWDVPNRKL--IAKFK-------AANTTVFEWSPDGEYFLTATTAPRLRVDN 382 (566)
T ss_pred CccceEECC-CCCEEEEeecCCCCCceEEEeccchhh--ccccc-------cCCceEEEEcCCCcEEEEEeccccEEecC
Confidence 667888999 8999888876 48999999999777 55544 123455799999999998864 57
Q ss_pred eEEEEeCCCCcccc
Q psy9598 837 HLLVYGLGGFKRPQ 850 (1915)
Q Consensus 837 ~I~Iwdl~s~~~~~ 850 (1915)
.++||++.+.....
T Consensus 383 g~KiwhytG~~l~~ 396 (566)
T KOG2315|consen 383 GIKIWHYTGSLLHE 396 (566)
T ss_pred CeEEEEecCceeeh
Confidence 78999988765443
|
|
| >KOG0008|consensus | Back alignment and domain information |
|---|
Probab=99.46 E-value=6.3e-14 Score=180.18 Aligned_cols=181 Identities=23% Similarity=0.380 Sum_probs=139.5
Q ss_pred ChHHHHhhcccccCCHHHHHHHHHHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHhcCCCCCCCcchhhhhccccCCCCCc
Q psy9598 1 LTTLRARFQNRFYRRITSAQFDVRYLAANAEKFNEPHSNIVKYARIITDLLLRIIKEPNPVDVPVVYHELLQNYETSSSE 80 (1915)
Q Consensus 1 L~tI~~kl~~~~Y~~~~ef~~D~~li~~Na~~yN~p~s~I~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (1915)
|+|+++.+..+-|...+.|+.|+.||+.|..+||+|-+..+..|+.+...+...++.-... ... +......--.+
T Consensus 1304 lq~~kk~v~kr~y~~r~~fle~~~~~~~ns~~yng~~~~~t~~~q~mls~~~~~~~ekedk----~~~-lEk~Inplld~ 1378 (1563)
T KOG0008|consen 1304 LQTQKKLVRKRLYESREHFLEELPLIVSNSTKYNGPLASLTRQQQSMLSLCFEKLKEKEDK----LWR-LEKAINPLLDD 1378 (1563)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHhhchhhhcCchHHHHHHHHHHHHHHHHhhchhHHH----HHH-HHhhcCcccCc
Confidence 6899999999999999999999999999999999999999999999888776544431100 000 00000000000
Q ss_pred ccccccccccccccCCCCcchhhhhhhhccccCCchhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCccccCCCcCCH
Q psy9598 81 EEEEEDSKSRQRRVRPTAVTRAQREAMNQKKLKRPFNWKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDL 160 (1915)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~F~~pvd~~~~pdY~~iIk~Pmdl 160 (1915)
+ ....+ -....++.+++..+.+|||++||++..+|+||.+||+||||
T Consensus 1379 ~--------------------------------d~v~~-~~~d~~vs~~~~ipes~~f~~~v~~k~~~~yy~kik~pmdl 1425 (1563)
T KOG0008|consen 1379 D--------------------------------DQVAF-FILDNIVSQMKEIPESWPFHEPVNKKRVPDYYKKIKNPMDL 1425 (1563)
T ss_pred c--------------------------------chhhH-hhhhhHHHHHHhcchhcccccccchhhchHHHHHhcChhhH
Confidence 0 00011 23556777888889999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy9598 161 GTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQNKRSKIYIMTTRLSEFAEEHLRRLTV 220 (1915)
Q Consensus 161 ~ti~~kl~~~~Y~~~~~f~~D~~Lif~N~~~yN~~~~s~i~~~a~~l~~~f~~~~~~~~~ 220 (1915)
.||.+++..+.|.+..+|.+||+||+.||..||+.. +.+..-|+++-++....+.+...
T Consensus 1426 ~~i~~n~~~~~y~s~~e~l~dv~~i~~n~~~~ng~e-~~y~~k~~k~~ev~~~~~~e~~~ 1484 (1563)
T KOG0008|consen 1426 ETILKNIPPHKYDSRSEFLDDVNLIYVNSVEYNGAE-SAYTKKARKIGEVGLANLLEYIE 1484 (1563)
T ss_pred HHHhhcCCccccccHHHHhhhhHhhcccceeecCcc-ccccHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999965 87777777776666555544433
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=3e-12 Score=163.10 Aligned_cols=237 Identities=14% Similarity=0.117 Sum_probs=161.7
Q ss_pred CCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCC---CeEEEEecccCccccceeccCccccccccC
Q psy9598 539 DKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTD---GCIGFWKYKLDIDISKTVFHEPVMFNERIR 615 (1915)
Q Consensus 539 DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~D---gtI~iWDl~~~~~~~~~~~~~~~~~~~~~~ 615 (1915)
+..|.|||..... ...+..|...|.+++|+|+ ++.|+.++.+ ..|.+||+.++....... +
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPD----G~~la~~s~~~~~~~i~i~dl~tg~~~~l~~----------~- 246 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPD----GSKLAYVSFENKKSQLVVHDLRSGARKVVAS----------F- 246 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCC----CCEEEEEEecCCCcEEEEEeCCCCceEEEec----------C-
Confidence 4689999987554 5667778889999999994 4777777643 479999998764211111 1
Q ss_pred CCCCceEEEEECCCCcEEEEEe-CCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEe-CCCcEEEEEcc
Q psy9598 616 PGNAHILCSSFSPGGLFLATGS-GDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGS-RDGTALIWYYK 693 (1915)
Q Consensus 616 ~~~~~V~~l~fspdg~~Lasgs-~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs-~DG~I~IWDl~ 693 (1915)
.+...+++|+|+|+.|++++ .+|.+.||.++... ..+..+..+...+.+++|+|+|..|+.++ .+|...||++.
T Consensus 247 --~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~--~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~ 322 (429)
T PRK01742 247 --RGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANG--GTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMS 322 (429)
T ss_pred --CCccCceeECCCCCEEEEEEecCCcEEEEEEECCC--CCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEE
Confidence 12234689999999888765 68877776553211 12344566777788999999999777555 67889999875
Q ss_pred CCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCCCeEEEEEc
Q psy9598 694 CSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESH 773 (1915)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~s 773 (1915)
........ . .+.. .+++|+|+|++|++++. ++ +.+||+.++........+ ....+.|+
T Consensus 323 ~~~~~~~~------------l----~~~~--~~~~~SpDG~~ia~~~~-~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~s 380 (429)
T PRK01742 323 ASGGGASL------------V----GGRG--YSAQISADGKTLVMING-DN-VVKQDLTSGSTEVLSSTF--LDESPSIS 380 (429)
T ss_pred CCCCCeEE------------e----cCCC--CCccCCCCCCEEEEEcC-CC-EEEEECCCCCeEEecCCC--CCCCceEC
Confidence 43211000 0 0111 34689999999988876 54 566999988765433332 24567899
Q ss_pred cCCCCEEEEEecCceEEEEECC--CCccccceeeeeeecCCCCcceEEEEEcCC
Q psy9598 774 PFDSRVLLSAGHDGLIIIWDIL--SSKQRGYKWFHNIVEGQGEGALFDGKWSPD 825 (1915)
Q Consensus 774 p~dg~~LaSgs~DG~I~IWdl~--s~~~~~~~~~~~~~~~~~~~~V~~vafSpd 825 (1915)
| ++.+|++++.+|.+.+|.+. ++.. ...+. .+.+.+...+|||-
T Consensus 381 P-dG~~i~~~s~~g~~~~l~~~~~~G~~--~~~l~-----~~~g~~~~p~wsp~ 426 (429)
T PRK01742 381 P-NGIMIIYSSTQGLGKVLQLVSADGRF--KARLP-----GSDGQVKFPAWSPY 426 (429)
T ss_pred C-CCCEEEEEEcCCCceEEEEEECCCCc--eEEcc-----CCCCCCCCcccCCC
Confidence 9 99999999999999888864 3444 44443 34567888999984
|
|
| >KOG2394|consensus | Back alignment and domain information |
|---|
Probab=99.43 E-value=8.1e-12 Score=147.92 Aligned_cols=245 Identities=12% Similarity=0.127 Sum_probs=163.5
Q ss_pred cEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEE------EEEeCCCCCEEEEEE-----eCCCCEEEEEeCCCcEEEEE
Q psy9598 478 AVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLL------ATLRGCSGEISDIAI-----DNRNILLAAGTVDKTIRIWN 546 (1915)
Q Consensus 478 ~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~------~~l~gH~~~I~~Laf-----spdg~~LaSgs~DgtIrVWD 546 (1915)
.++...++-.|.+|+..-.+ .+.||+...+..+ ..+.+ ...+|-+| .+.+--|+.|-.-|.|.+.|
T Consensus 125 ~~~~~~~~~~gd~lcFnvg~-~lyv~~~~g~~~~~~pi~k~~y~g--t~P~cHdfn~~~a~~~g~dllIGf~tGqvq~id 201 (636)
T KOG2394|consen 125 IVTNTNQSGKGDRLCFNVGR-ELYVYSYRGAADLSKPIDKREYKG--TSPTCHDFNSFTATPKGLDLLIGFTTGQVQLID 201 (636)
T ss_pred ceeeccccCCCCEEEEecCC-eEEEEEccCcchhccchhhhcccC--CCCceecccccccCCCCcceEEeeccCceEEec
Confidence 45555566667777655433 6888887643211 11222 22334444 34566788888889999888
Q ss_pred CCCCceEEEee----cCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceE
Q psy9598 547 LQTLAPISVLV----GHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHIL 622 (1915)
Q Consensus 547 l~tg~~~~~l~----~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~ 622 (1915)
.........+. -....|+||.|.| ++...++.+-.+|.+.+||..-.- . ..-.
T Consensus 202 p~~~~~sklfne~r~i~ktsvT~ikWvp---g~~~~Fl~a~~sGnlyly~~~~~~-------~-------------~t~p 258 (636)
T KOG2394|consen 202 PINFEVSKLFNEERLINKSSVTCIKWVP---GSDSLFLVAHASGNLYLYDKEIVC-------G-------------ATAP 258 (636)
T ss_pred chhhHHHHhhhhcccccccceEEEEEEe---CCCceEEEEEecCceEEeeccccc-------c-------------CCCC
Confidence 76522211111 1336899999999 356788888899999999862110 0 0111
Q ss_pred EEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeee
Q psy9598 623 CSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRL 702 (1915)
Q Consensus 623 ~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~ 702 (1915)
+....+++..++.... .-.... ..+..+.--.+.|..++|+|||.+||+.+.||.++|||+.+..++.
T Consensus 259 ~~~~~k~~~~f~i~t~-------ksk~~r--NPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg--- 326 (636)
T KOG2394|consen 259 SYQALKDGDQFAILTS-------KSKKTR--NPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLG--- 326 (636)
T ss_pred cccccCCCCeeEEeee-------eccccC--CccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHH---
Confidence 1222334444443322 111111 1222233345589999999999999999999999999998766322
Q ss_pred cccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCCCeEEEEEcc
Q psy9598 703 DMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHP 774 (1915)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp 774 (1915)
....--+...||+|||||+||++|+. |-.|.||.+...+.+..-+||.++|..|+|.|
T Consensus 327 -------------~mkSYFGGLLCvcWSPDGKyIvtGGE-DDLVtVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 327 -------------VMKSYFGGLLCVCWSPDGKYIVTGGE-DDLVTVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred -------------HHHhhccceEEEEEcCCccEEEecCC-cceEEEEEeccceEEEeccccccceeeEeecc
Confidence 12224467899999999999999999 99999999999999999999999999999987
|
|
| >KOG1828|consensus | Back alignment and domain information |
|---|
Probab=99.43 E-value=4.1e-14 Score=162.04 Aligned_cols=238 Identities=16% Similarity=0.182 Sum_probs=160.1
Q ss_pred HHHhcCCCccCCCCCCCCCCCCCccccccCCCCCHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhhcCCCCHHHHHHHH
Q psy9598 1382 LEEVMGLSVAEPFLVPVDISQYPAYAYVVEYPVDLTTLRARFQNRFYRRITSAQFDVRYLAANAEKFNEPHSNIVKYARI 1461 (1915)
Q Consensus 1382 ~~~~~~~~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~tI~~rl~~~~Y~~~~~~~~D~~l~~~Na~~yN~~~s~i~~~a~~ 1461 (1915)
+.++.......-|..||.....|+|-+||..|||+.||+.+++.++|..+.+|..|+++|..||..||.+....+..|+.
T Consensus 28 lrkl~sKdp~q~fafplt~~map~y~~iis~Pmd~~t~r~kidd~~yl~L~~m~~d~kl~~~na~~yn~~~Tv~~~aaKr 107 (418)
T KOG1828|consen 28 LRKLPSKDPKQKFAFPLTDKMAPNYLEIISEPMDRITKRSKIDDTRYLVLSQMEFDRKLPDGNATLYNLHPTVPIVAAKR 107 (418)
T ss_pred HHhccccChhhhhccccchhhccchHhhhhcccccccccccCCCccceechhhhhhhcccccchhhhhcCCccccccccc
Confidence 34455667777899999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHhC--------CCC---------CCccch-------h--hhhcccccCCCC-------hhhhhhhhhhhccc
Q psy9598 1462 ITDLLLRIIKE--------PNP---------VDVPVV-------Y--HELLQNYETSSS-------EEEEEEDSKSRQRR 1508 (1915)
Q Consensus 1462 l~~~~~~~~~~--------~~~---------~~~~~~-------~--~~~~~~~~~~~~-------~~~~~~~~~~~~~~ 1508 (1915)
|..+...+.+. +-. +.+-++ + ....+....+++ ++++..+..-.-..
T Consensus 108 L~~v~~~~~qe~~l~f~~~slg~y~~~rn~~~~v~~la~~~~sr~~~~d~~a~~s~ee~~l~v~~~e~~~~~~~~fs~k~ 187 (418)
T KOG1828|consen 108 LCPVRLGMTQERLLSFVNTSLGFYEDKRNKVTPVLYLAYGPYSRYHYDDTFANISKEESDLIVSTYEEDSDLPSDFSHKF 187 (418)
T ss_pred cchhhcchhhHHHHHhhhcccchhhhcccccCceeeeccCCccchhhhhhcCCCcccccccccccccccccccccccccc
Confidence 87775433332 100 000000 0 000000000000 00000000000000
Q ss_pred cCCcchhhhhHHHhhhhhcCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCccccccCccchhhHHhhhcCCCCC
Q psy9598 1509 VRPTAVTRAQREAMNQKKLKRPFNWKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYE 1588 (1915)
Q Consensus 1509 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~s~~F~~pv~~~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~ 1588 (1915)
...... +...-.... .................+........|..+|....+|.|..+|++|+|++|++.|..++.|.
T Consensus 188 ~e~~~e-~~~~lgds~--g~lqtg~~~l~~~q~~kl~~~~p~~~lnyg~tas~aP~YSm~Ik~~~~~~Tygdk~~andy~ 264 (418)
T KOG1828|consen 188 LETCQE-RVVTLGDSV--GDLQTGGQQLQTLQEDKLNRVDPVAYLNYGPTASFAPGYSMTITEVEPPGTYGDKSSANDYE 264 (418)
T ss_pred cccCcc-ceEehhhhh--hhhccccHHHHHHHHHHhcccCchhhhcccchhhhcccccccccccCCCcchhhhhhhhhhh
Confidence 000000 000000000 00001111223334455566677889999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHH
Q psy9598 1589 SPIDFVKDVKRVFHNSRNYNQNKRSKIYIMTTRLSE 1624 (1915)
Q Consensus 1589 s~~ef~~Dv~lif~Na~~yN~~~~s~i~~~a~~l~~ 1624 (1915)
| -+|..|..||+-||++||.+. ..+|..|..+..
T Consensus 265 S-~~f~~D~kl~~l~amT~gehs-k~yyelank~lh 298 (418)
T KOG1828|consen 265 S-LSFTQDRKLIALKAVTNGEHS-KSYYELANKQLH 298 (418)
T ss_pred h-hhhhcccchhhHHHHhcCCcc-hHHHHHHHhhhh
Confidence 9 899999999999999999987 777887777655
|
|
| >KOG2321|consensus | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.6e-11 Score=146.35 Aligned_cols=285 Identities=13% Similarity=0.127 Sum_probs=195.6
Q ss_pred CCCCcEEEEEEcCCCCEE-EEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCce
Q psy9598 474 GHLSAVFCVLFDKLGEVI-VTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAP 552 (1915)
Q Consensus 474 gH~~~V~~vafspdg~~L-aTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~ 552 (1915)
+|....+.|..+|||+|| |||..--.|++||+....+...-.--...|.-.-++.|-..++.-..|.+|-+..-. |..
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~-G~h 127 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKY-GRH 127 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhc-Cee
Confidence 788999999999999985 567778899999997654433221123345555556665556666678877765432 211
Q ss_pred EEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcE
Q psy9598 553 ISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLF 632 (1915)
Q Consensus 553 ~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~ 632 (1915)
..+. -...-..++++-.. .-|++++....|.-+++..|..+..+... .+.+++|..++-..+
T Consensus 128 -y~~R-IP~~GRDm~y~~~s----cDly~~gsg~evYRlNLEqGrfL~P~~~~------------~~~lN~v~in~~hgL 189 (703)
T KOG2321|consen 128 -YRTR-IPKFGRDMKYHKPS----CDLYLVGSGSEVYRLNLEQGRFLNPFETD------------SGELNVVSINEEHGL 189 (703)
T ss_pred -eeee-cCcCCccccccCCC----ccEEEeecCcceEEEEccccccccccccc------------cccceeeeecCccce
Confidence 1111 11122455555422 33455555556777788887654433322 477999999999999
Q ss_pred EEEEeCCCeEEEEEecCCCCCceeE---EeccCCCC-----eeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecc
Q psy9598 633 LATGSGDHHVRVYKMDGVDSPLGIL---EVEEHSDK-----VDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDM 704 (1915)
Q Consensus 633 Lasgs~Dg~I~IwDl~~~~~~~~i~---~l~~h~~~-----V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~ 704 (1915)
|++|+.+|.|-+||.+.......+. .+..|.+. |++|.|+.+|-.+++|+.+|.|.|||+++.+...+
T Consensus 190 la~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~---- 265 (703)
T KOG2321|consen 190 LACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLV---- 265 (703)
T ss_pred EEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceee----
Confidence 9999999999999986433222111 12334443 99999999999999999999999999998774332
Q ss_pred cccCCCCccccccccccccEEEEEECCC--CCEEEEEEecCCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEE
Q psy9598 705 NTCLPHTKETSDETNKKIKVTMVAWDAS--DRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLS 782 (1915)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~V~~va~spd--g~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaS 782 (1915)
...+...+|..+.|.+. +..|++. . ...++|||-.+|+....+.... .++.+|+-| ++.++++
T Consensus 266 -----------kdh~~e~pi~~l~~~~~~~q~~v~S~-D-k~~~kiWd~~~Gk~~asiEpt~-~lND~C~~p-~sGm~f~ 330 (703)
T KOG2321|consen 266 -----------KDHGYELPIKKLDWQDTDQQNKVVSM-D-KRILKIWDECTGKPMASIEPTS-DLNDFCFVP-GSGMFFT 330 (703)
T ss_pred -----------cccCCccceeeecccccCCCceEEec-c-hHHhhhcccccCCceeeccccC-CcCceeeec-CCceEEE
Confidence 22345567888999765 3344444 3 5789999999999998887544 499999999 8889999
Q ss_pred EecCceEEEEECCC
Q psy9598 783 AGHDGLIIIWDILS 796 (1915)
Q Consensus 783 gs~DG~I~IWdl~s 796 (1915)
|-.++.+..|=+..
T Consensus 331 Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 331 ANESSKMHTYYIPS 344 (703)
T ss_pred ecCCCcceeEEccc
Confidence 98888777665544
|
|
| >KOG2139|consensus | Back alignment and domain information |
|---|
Probab=99.40 E-value=1e-10 Score=132.96 Aligned_cols=292 Identities=15% Similarity=0.166 Sum_probs=183.7
Q ss_pred CcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEe-CCCCCEEEEEEeCCC-CEEEEEeCCCcEEEEECCC----C
Q psy9598 477 SAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLR-GCSGEISDIAIDNRN-ILLAAGTVDKTIRIWNLQT----L 550 (1915)
Q Consensus 477 ~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~-gH~~~I~~Lafspdg-~~LaSgs~DgtIrVWDl~t----g 550 (1915)
..+..++|++.-.-+|+++.|-.|+||+-.+ .+...++ .....|+||+|-|.+ .-|+.|+. +-|.||.... +
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~s~tln~~ 176 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNAN 176 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeec-ceeEEEEcCcccccc
Confidence 4566788888666678888999999999766 4444443 235679999999964 46666665 4589998742 1
Q ss_pred ce----------EEEeecCCCCeEEEEeccCccCCCcEEEEEe-CCCeEEEEecccCccccceeccCccccccccCCCCC
Q psy9598 551 AP----------ISVLVGHQGIITGVNFCPLEVNGFNYLASTS-TDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNA 619 (1915)
Q Consensus 551 ~~----------~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs-~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (1915)
.. +....|| ..|+++.|.++ +..|++++ .|..|.|||..++..+..... +.+
T Consensus 177 r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~d----gt~l~tAS~gsssi~iWdpdtg~~~pL~~~------------glg 239 (445)
T KOG2139|consen 177 RNIRMMSTHHLQVLQDPGH-NPVTSMQWNED----GTILVTASFGSSSIMIWDPDTGQKIPLIPK------------GLG 239 (445)
T ss_pred cccccccccchhheeCCCC-ceeeEEEEcCC----CCEEeecccCcceEEEEcCCCCCccccccc------------CCC
Confidence 11 1122344 68999999984 47778777 467899999999865433311 236
Q ss_pred ceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCce--
Q psy9598 620 HILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQW-- 697 (1915)
Q Consensus 620 ~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~-- 697 (1915)
.+.-+.|||||.+|++++-|+..++|.....-..... .-..+.|...+|+|.|.+|+.++. |.-+||.+.....
T Consensus 240 g~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw---~lgsgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~ 315 (445)
T KOG2139|consen 240 GFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERW---ILGSGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDS 315 (445)
T ss_pred ceeeEEEcCCCCEEEEecccceeeeehhcccceecce---eccCCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCc
Confidence 6888999999999999999999999976432222222 223458999999999997655443 3334554432211
Q ss_pred ----------EEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEec-------CCeEEEEECCCCceEEEe
Q psy9598 698 ----------RFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINF-------NFQIKIWDAFNGDLVQVL 760 (1915)
Q Consensus 698 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~-------Dg~I~vwD~~tg~~i~~l 760 (1915)
.....++..+ .......-..+.+.+++|+|.|.+|++.-.. -+.|.+||.+..-.+...
T Consensus 316 ~~~~~~~~k~~lliaDL~e~----ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels 391 (445)
T KOG2139|consen 316 VFLRPQSIKRVLLIADLQEV----TICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELS 391 (445)
T ss_pred cccCcccceeeeeeccchhh----hhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEE
Confidence 0001111100 0011122235778999999999999987641 123666776544333222
Q ss_pred e-CC--CCCeEEEEEccC--CCCEEEEEecCceEEEEECC
Q psy9598 761 K-GH--TNEVFVLESHPF--DSRVLLSAGHDGLIIIWDIL 795 (1915)
Q Consensus 761 ~-gH--~~~V~sl~~sp~--dg~~LaSgs~DG~I~IWdl~ 795 (1915)
. |- ...-..|+|+|. ++.+|..|=..|.|.-|++.
T Consensus 392 ~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 392 YCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred ecccccCCCCceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence 1 11 111344556553 45666666667777776653
|
|
| >KOG2321|consensus | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.7e-11 Score=142.35 Aligned_cols=290 Identities=14% Similarity=0.133 Sum_probs=191.8
Q ss_pred CCCCCEEEEEEeCCCCEE-EEEeCCCcEEEEECCCCceEEEeecCC--CCeEEEEeccCccCCCcEEEEEeCCCeEEEEe
Q psy9598 516 GCSGEISDIAIDNRNILL-AAGTVDKTIRIWNLQTLAPISVLVGHQ--GIITGVNFCPLEVNGFNYLASTSTDGCIGFWK 592 (1915)
Q Consensus 516 gH~~~I~~Lafspdg~~L-aSgs~DgtIrVWDl~tg~~~~~l~~h~--~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWD 592 (1915)
+|....+.|..+|||+|| |+|..--.|+|||+...... +..|. ..|.-+-.+. +...++.-..|.+|-+..
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLK--FERhlDae~V~feiLsD----D~SK~v~L~~DR~IefHa 122 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLK--FERHLDAEVVDFEILSD----DYSKSVFLQNDRTIEFHA 122 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceee--eeecccccceeEEEecc----chhhheEeecCceeeehh
Confidence 467788999999999976 56667889999999865443 33343 3343333333 335566666777776543
Q ss_pred cccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEc
Q psy9598 593 YKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWS 672 (1915)
Q Consensus 593 l~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fs 672 (1915)
.-.. ...++- ...-..++++.-..-|++++....|+-+++ ..+..+..+....+.+++|..+
T Consensus 123 k~G~--------------hy~~RI-P~~GRDm~y~~~scDly~~gsg~evYRlNL---EqGrfL~P~~~~~~~lN~v~in 184 (703)
T KOG2321|consen 123 KYGR--------------HYRTRI-PKFGRDMKYHKPSCDLYLVGSGSEVYRLNL---EQGRFLNPFETDSGELNVVSIN 184 (703)
T ss_pred hcCe--------------eeeeec-CcCCccccccCCCccEEEeecCcceEEEEc---cccccccccccccccceeeeec
Confidence 2111 000000 011233444433333444445456666777 3444455556667899999999
Q ss_pred CCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECC
Q psy9598 673 HSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAF 752 (1915)
Q Consensus 673 pdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~ 752 (1915)
+-..+|++|+.+|.|-.||.++...+... +.....+. .........|+++.|+.+|-.+++|++ +|.|.|||++
T Consensus 185 ~~hgLla~Gt~~g~VEfwDpR~ksrv~~l-~~~~~v~s----~pg~~~~~svTal~F~d~gL~~aVGts-~G~v~iyDLR 258 (703)
T KOG2321|consen 185 EEHGLLACGTEDGVVEFWDPRDKSRVGTL-DAASSVNS----HPGGDAAPSVTALKFRDDGLHVAVGTS-TGSVLIYDLR 258 (703)
T ss_pred CccceEEecccCceEEEecchhhhhheee-ecccccCC----CccccccCcceEEEecCCceeEEeecc-CCcEEEEEcc
Confidence 99999999999999999999877643322 11111111 112223456999999999999999999 9999999999
Q ss_pred CCceEEEee-CCCCCeEEEEEccCCC-CEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEE
Q psy9598 753 NGDLVQVLK-GHTNEVFVLESHPFDS-RVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCA 830 (1915)
Q Consensus 753 tg~~i~~l~-gH~~~V~sl~~sp~dg-~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~La 830 (1915)
+.+++..-. +..-+|..+.|.+.++ ..|+|. ....++|||-.+|+. ...+. ....+.++|+-|++.+|+
T Consensus 259 a~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~--~asiE------pt~~lND~C~~p~sGm~f 329 (703)
T KOG2321|consen 259 ASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKP--MASIE------PTSDLNDFCFVPGSGMFF 329 (703)
T ss_pred cCCceeecccCCccceeeecccccCCCceEEec-chHHhhhcccccCCc--eeecc------ccCCcCceeeecCCceEE
Confidence 988776543 3345789999987433 344444 456899999999988 54443 345589999999999999
Q ss_pred EEeCCCeEEEEeCC
Q psy9598 831 LTDSYGHLLVYGLG 844 (1915)
Q Consensus 831 sg~~dG~I~Iwdl~ 844 (1915)
++-.++.+..|=+.
T Consensus 330 ~Ane~~~m~~yyiP 343 (703)
T KOG2321|consen 330 TANESSKMHTYYIP 343 (703)
T ss_pred EecCCCcceeEEcc
Confidence 99888777665433
|
|
| >KOG2111|consensus | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.2e-10 Score=126.83 Aligned_cols=239 Identities=18% Similarity=0.221 Sum_probs=161.2
Q ss_pred CEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCCCC--eEEEEeccCccCCCcEEE-EEeCC------CeEEE
Q psy9598 520 EISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGI--ITGVNFCPLEVNGFNYLA-STSTD------GCIGF 590 (1915)
Q Consensus 520 ~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~--V~sl~fsp~~~~d~~~L~-sgs~D------gtI~i 590 (1915)
...+++|+.|...+++|..+| .+||+++-.+.......+.+. +.-+-|-. ++|+ .|+.+ ..|.|
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~------N~laLVGGg~~pky~pNkviI 79 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRS------NYLALVGGGSRPKYPPNKVII 79 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhh------ceEEEecCCCCCCCCCceEEE
Confidence 455699999999999988666 899998764433322222222 22223322 3433 34333 47999
Q ss_pred EecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccC--CCCeeE
Q psy9598 591 WKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEH--SDKVDS 668 (1915)
Q Consensus 591 WDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h--~~~V~s 668 (1915)
||=....++..+.+. ..|.++.+.++ .|++. ..+.|.||.... .+..+..+... ...+.+
T Consensus 80 WDD~k~~~i~el~f~-------------~~I~~V~l~r~--riVvv-l~~~I~VytF~~--n~k~l~~~et~~NPkGlC~ 141 (346)
T KOG2111|consen 80 WDDLKERCIIELSFN-------------SEIKAVKLRRD--RIVVV-LENKIYVYTFPD--NPKLLHVIETRSNPKGLCS 141 (346)
T ss_pred EecccCcEEEEEEec-------------cceeeEEEcCC--eEEEE-ecCeEEEEEcCC--ChhheeeeecccCCCceEe
Confidence 995555555555554 67888998876 45544 356899999842 23333333322 223333
Q ss_pred EEEcCCCCEEEE-EeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEE
Q psy9598 669 IQWSHSHLRFVS-GSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIK 747 (1915)
Q Consensus 669 l~fspdg~~L~s-gs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~ 747 (1915)
++-+.+..+||. |-.-|.|+|-|+...... .......|...|.|++++.+|..|++++...-.|+
T Consensus 142 ~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~--------------~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIR 207 (346)
T KOG2111|consen 142 LCPTSNKSLLAFPGFKTGQVQIVDLASTKPN--------------APSIINAHDSDIACVALNLQGTLVATASTKGTLIR 207 (346)
T ss_pred ecCCCCceEEEcCCCccceEEEEEhhhcCcC--------------CceEEEcccCceeEEEEcCCccEEEEeccCcEEEE
Confidence 332223334443 445689999988755410 22334568999999999999999999999444589
Q ss_pred EEECCCCceEEEeeC--CCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCc
Q psy9598 748 IWDAFNGDLVQVLKG--HTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSK 798 (1915)
Q Consensus 748 vwD~~tg~~i~~l~g--H~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~ 798 (1915)
|||..+|.++..++- ....|++|+|+| +..+|+++|..|+|.||.+....
T Consensus 208 IFdt~~g~~l~E~RRG~d~A~iy~iaFSp-~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 208 IFDTEDGTLLQELRRGVDRADIYCIAFSP-NSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred EEEcCCCcEeeeeecCCchheEEEEEeCC-CccEEEEEcCCCeEEEEEeecCC
Confidence 999999999999973 234799999999 99999999999999999987643
|
|
| >KOG1272|consensus | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.6e-12 Score=151.40 Aligned_cols=276 Identities=13% Similarity=0.128 Sum_probs=204.7
Q ss_pred CCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCcc
Q psy9598 519 GEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDID 598 (1915)
Q Consensus 519 ~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~ 598 (1915)
-.-..+.++.+|++|+.|+.-|.|-.+|+.++.+...+.- ...|.++.|... ..+++..+...+.|||-..- .
T Consensus 130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-~Etv~Dv~~LHn-----eq~~AVAQK~y~yvYD~~Gt-E 202 (545)
T KOG1272|consen 130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV-METVRDVTFLHN-----EQFFAVAQKKYVYVYDNNGT-E 202 (545)
T ss_pred cCCeeeeecCCccEEEecCCccceeeeecccceeeeeeeh-hhhhhhhhhhcc-----hHHHHhhhhceEEEecCCCc-E
Confidence 3456789999999999999999999999999998887753 456888899874 34555566788999985432 2
Q ss_pred ccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEE
Q psy9598 599 ISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRF 678 (1915)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L 678 (1915)
+..+.- ...|..+.|-|..-+|++++..|.++.-|+ ..+..+..+....+.+..++-+|-...+
T Consensus 203 lHClk~-------------~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DV---S~GklVa~~~t~~G~~~vm~qNP~NaVi 266 (545)
T KOG1272|consen 203 LHCLKR-------------HIRVARLEFLPYHFLLVAASEAGFLKYQDV---STGKLVASIRTGAGRTDVMKQNPYNAVI 266 (545)
T ss_pred Eeehhh-------------cCchhhhcccchhheeeecccCCceEEEee---chhhhhHHHHccCCccchhhcCCccceE
Confidence 222221 256788999999889999999999999999 4445566667778889999999999899
Q ss_pred EEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEE
Q psy9598 679 VSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQ 758 (1915)
Q Consensus 679 ~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~ 758 (1915)
-+|...|+|.+|.....+. ......|.+.|.+|++.++|.|+++++. |..|+|||++....++
T Consensus 267 h~GhsnGtVSlWSP~skeP----------------LvKiLcH~g~V~siAv~~~G~YMaTtG~-Dr~~kIWDlR~~~ql~ 329 (545)
T KOG1272|consen 267 HLGHSNGTVSLWSPNSKEP----------------LVKILCHRGPVSSIAVDRGGRYMATTGL-DRKVKIWDLRNFYQLH 329 (545)
T ss_pred EEcCCCceEEecCCCCcch----------------HHHHHhcCCCcceEEECCCCcEEeeccc-ccceeEeeeccccccc
Confidence 9999999999997665542 1233458899999999999999999999 9999999999887777
Q ss_pred EeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEEC-CCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEEeCCCe
Q psy9598 759 VLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDI-LSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGH 837 (1915)
Q Consensus 759 ~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl-~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~dG~ 837 (1915)
++.. ..+...+++|. .-++++|....|.||.= ..+....-..+ +.....+.|.++.|.|-...|-+|...|.
T Consensus 330 t~~t-p~~a~~ls~Sq---kglLA~~~G~~v~iw~d~~~~s~~~~~pY---m~H~~~~~V~~l~FcP~EDvLGIGH~~G~ 402 (545)
T KOG1272|consen 330 TYRT-PHPASNLSLSQ---KGLLALSYGDHVQIWKDALKGSGHGETPY---MNHRCGGPVEDLRFCPYEDVLGIGHAGGI 402 (545)
T ss_pred eeec-CCCcccccccc---ccceeeecCCeeeeehhhhcCCCCCCcch---hhhccCcccccceeccHHHeeeccccCCc
Confidence 6654 34567788876 33455555568999943 22221001111 11122358999999998888888877665
Q ss_pred EEEE
Q psy9598 838 LLVY 841 (1915)
Q Consensus 838 I~Iw 841 (1915)
-.|.
T Consensus 403 tsil 406 (545)
T KOG1272|consen 403 TSIL 406 (545)
T ss_pred eeEe
Confidence 4443
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.5e-10 Score=133.15 Aligned_cols=331 Identities=16% Similarity=0.141 Sum_probs=217.6
Q ss_pred eeeEEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCC------
Q psy9598 467 RQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDK------ 540 (1915)
Q Consensus 467 ~~~~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~Dg------ 540 (1915)
..+.++..-.-++..++|||.|.+|++.... .|.+|....+..+..+. ...|..+.|+|.+.+|++-+..+
T Consensus 23 ~~~~~~~~~~~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~~l~~~~--~~~V~~~~fSP~~kYL~tw~~~pi~~pe~ 99 (561)
T COG5354 23 VIHTRFESENWPVAYVSESPLGTYLFSEHAA-GVECWGGPSKAKLVRFR--HPDVKYLDFSPNEKYLVTWSREPIIEPEI 99 (561)
T ss_pred cccccccccCcchhheeecCcchheehhhcc-ceEEccccchhheeeee--cCCceecccCcccceeeeeccCCccChhh
Confidence 3334444466789999999999999988766 59999988877666665 35699999999999999976433
Q ss_pred ---------cEEEEECCCCceEEEeecCCCC--eE-EEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCcc
Q psy9598 541 ---------TIRIWNLQTLAPISVLVGHQGI--IT-GVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPV 608 (1915)
Q Consensus 541 ---------tIrVWDl~tg~~~~~l~~h~~~--V~-sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~ 608 (1915)
.+.|||+.+|..+..+.+-..+ .+ -+.|+-+. .+++-. -...+.|+++ ++.. ....+.
T Consensus 100 e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D----~y~ARv-v~~sl~i~e~-t~n~-~~~p~~--- 169 (561)
T COG5354 100 EISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDD----KYVARV-VGSSLYIHEI-TDNI-EEHPFK--- 169 (561)
T ss_pred ccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecc----hhhhhh-ccCeEEEEec-CCcc-ccCchh---
Confidence 4999999999999998876655 45 56776532 444433 3346889987 3321 111111
Q ss_pred ccccccCCCCCceEEEEECCCCc--EEEE-----EeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEE
Q psy9598 609 MFNERIRPGNAHILCSSFSPGGL--FLAT-----GSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSG 681 (1915)
Q Consensus 609 ~~~~~~~~~~~~V~~l~fspdg~--~Las-----gs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sg 681 (1915)
.+ ....|...+|+|.|+ .|+. ++..+.++||.+. .........+. ...-..+.|.+.|.+|++-
T Consensus 170 ----~l--r~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp-~~s~l~tk~lf--k~~~~qLkW~~~g~~ll~l 240 (561)
T COG5354 170 ----NL--RPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIP-KNSVLVTKNLF--KVSGVQLKWQVLGKYLLVL 240 (561)
T ss_pred ----hc--cccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEcc-CCCeeeeeeeE--eecccEEEEecCCceEEEE
Confidence 00 124578888888643 2332 4667899999984 22222222221 1222456788888876543
Q ss_pred eC-----------CCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEE-ecCCeEEEE
Q psy9598 682 SR-----------DGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAI-NFNFQIKIW 749 (1915)
Q Consensus 682 s~-----------DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s-~~Dg~I~vw 749 (1915)
.. ...+.|+++....+. ......+.|..++|.|.+..+++.+ ..+..+.++
T Consensus 241 ~~t~~ksnKsyfgesnLyl~~~~e~~i~-----------------V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~ 303 (561)
T COG5354 241 VMTHTKSNKSYFGESNLYLLRITERSIP-----------------VEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVF 303 (561)
T ss_pred EEEeeecccceeccceEEEEeecccccc-----------------eeccccccceeeeecccCCceeEEecccccceeec
Confidence 21 133455554422211 1114568899999999887666554 457889999
Q ss_pred ECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEEecC---ceEEEEECCCCccccce-eeeeeecCCCCcceEEEEEcCC
Q psy9598 750 DAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHD---GLIIIWDILSSKQRGYK-WFHNIVEGQGEGALFDGKWSPD 825 (1915)
Q Consensus 750 D~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~D---G~I~IWdl~s~~~~~~~-~~~~~~~~~~~~~V~~vafSpd 825 (1915)
|++.. +...+ ....=+.+.|+| .+++++.+|-| |.|-|||...... .. .+. .....-|.|+||
T Consensus 304 ~lr~N-l~~~~--Pe~~rNT~~fsp-~~r~il~agF~nl~gni~i~~~~~rf~--~~~~~~-------~~n~s~~~wspd 370 (561)
T COG5354 304 DLRGN-LRFYF--PEQKRNTIFFSP-HERYILFAGFDNLQGNIEIFDPAGRFK--VAGAFN-------GLNTSYCDWSPD 370 (561)
T ss_pred ccccc-eEEec--CCcccccccccC-cccEEEEecCCccccceEEeccCCceE--EEEEee-------cCCceEeeccCC
Confidence 98755 44443 334446778999 88999988765 7899999976544 22 222 123455789999
Q ss_pred CCEEEEEe------CCCeEEEEeCCCCccc
Q psy9598 826 GTTCALTD------SYGHLLVYGLGGFKRP 849 (1915)
Q Consensus 826 g~~Lasg~------~dG~I~Iwdl~s~~~~ 849 (1915)
|.++.+.. .|..|.||++.+....
T Consensus 371 ~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f 400 (561)
T COG5354 371 GQFYDTDTTSEKLRVDNSIKLWDVYGAKVF 400 (561)
T ss_pred ceEEEecCCCcccccCcceEEEEecCchhh
Confidence 99988764 4678999999876543
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.9e-10 Score=140.64 Aligned_cols=310 Identities=16% Similarity=0.130 Sum_probs=195.7
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccc
Q psy9598 532 LLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFN 611 (1915)
Q Consensus 532 ~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~ 611 (1915)
++++-..++.|.|.|..+.+.+..+......-..+.|+| +++++++++.||.|.++|+.+.+.+......
T Consensus 8 ~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~----Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G------ 77 (369)
T PF02239_consen 8 FYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSP----DGRYLYVANRDGTVSVIDLATGKVVATIKVG------ 77 (369)
T ss_dssp EEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-----SSEEEEEETTSEEEEEETTSSSEEEEEE-S------
T ss_pred EEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecC----CCCEEEEEcCCCeEEEEECCcccEEEEEecC------
Confidence 345566789999999999999999986555455678888 4589999999999999999999876665544
Q ss_pred cccCCCCCceEEEEECCCCcEEEEEe-CCCeEEEEEecCCCCCceeEEecc-------CCCCeeEEEEcCCCCEEEEEeC
Q psy9598 612 ERIRPGNAHILCSSFSPGGLFLATGS-GDHHVRVYKMDGVDSPLGILEVEE-------HSDKVDSIQWSHSHLRFVSGSR 683 (1915)
Q Consensus 612 ~~~~~~~~~V~~l~fspdg~~Lasgs-~Dg~I~IwDl~~~~~~~~i~~l~~-------h~~~V~sl~fspdg~~L~sgs~ 683 (1915)
....++++|++|+++++++ ..+.|.|+|..+ ...+..+.. ....+.+|..++....++.+-.
T Consensus 78 -------~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~t---le~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lk 147 (369)
T PF02239_consen 78 -------GNPRGIAVSPDGKYVYVANYEPGTVSVIDAET---LEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLK 147 (369)
T ss_dssp -------SEEEEEEE--TTTEEEEEEEETTEEEEEETTT-----EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEET
T ss_pred -------CCcceEEEcCCCCEEEEEecCCCceeEecccc---ccceeecccccccccccCCCceeEEecCCCCEEEEEEc
Confidence 5578899999999988775 589999999843 333433322 2346788888888887776666
Q ss_pred C-CcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEee-
Q psy9598 684 D-GTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLK- 761 (1915)
Q Consensus 684 D-G~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~- 761 (1915)
| +.|.+-|+......... ............|+|+++|++++......|-++|..+++.+..+.
T Consensus 148 d~~~I~vVdy~d~~~~~~~---------------~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~ 212 (369)
T PF02239_consen 148 DTGEIWVVDYSDPKNLKVT---------------TIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDT 212 (369)
T ss_dssp TTTEEEEEETTTSSCEEEE---------------EEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-
T ss_pred cCCeEEEEEecccccccee---------------eecccccccccccCcccceeeecccccceeEEEeeccceEEEEeec
Confidence 5 77766676654321111 111223445689999999998887768899999999998887664
Q ss_pred ---CCCCCeEEEEEccCCC---------CEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEE
Q psy9598 762 ---GHTNEVFVLESHPFDS---------RVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTC 829 (1915)
Q Consensus 762 ---gH~~~V~sl~~sp~dg---------~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~L 829 (1915)
.|..++..+ .||..| ...++.-..+.+.+|+..+.+. +..+. ..+ +. .-+..||++++|
T Consensus 213 g~~p~~~~~~~~-php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkv--v~~I~----~~G-~g-lFi~thP~s~~v 283 (369)
T PF02239_consen 213 GKKPHPGPGANF-PHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKV--VKTIP----TQG-GG-LFIKTHPDSRYV 283 (369)
T ss_dssp SSSBEETTEEEE-EETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSE--EEEEE-----SS-SS---EE--TT-SEE
T ss_pred cccccccccccc-cCCCcceEEeeccccceecccccCCccccchhhcCeE--EEEEE----CCC-Cc-ceeecCCCCccE
Confidence 244444443 344121 2222222223455677766666 55554 222 22 667889999999
Q ss_pred EEE----eCCCeEEEEeCCCCcccccCC-------CceeecCCCCeee---ecCCCccceeecccCCCCC
Q psy9598 830 ALT----DSYGHLLVYGLGGFKRPQNIP-------RELFFHTDYRTLN---RPNGLFEPTYDEVTNLPPH 885 (1915)
Q Consensus 830 asg----~~dG~I~Iwdl~s~~~~~~l~-------~~~~F~~d~~~Lv---~~~~~~~~v~D~~t~~~p~ 885 (1915)
.+. ...+.|.|+|..+.+....+. .++-|+.||+.+- .+..+.+.+||..|.....
T Consensus 284 wvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~ 353 (369)
T PF02239_consen 284 WVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKK 353 (369)
T ss_dssp EEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEE
T ss_pred EeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEE
Confidence 998 455899999999987665552 2789999998664 3334357799988764433
|
... |
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.7e-10 Score=146.86 Aligned_cols=236 Identities=13% Similarity=0.024 Sum_probs=157.7
Q ss_pred CcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeC---CCcEEEEECCCCceEEEeecCCCCeEEEEeccCccC
Q psy9598 498 LLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTV---DKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVN 574 (1915)
Q Consensus 498 g~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~---DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~ 574 (1915)
..|.+||...+.. ..+..+...+.+.+|+|||+.|+..+. +..|.+|++.+|+.... ....+.+.++.|+|++
T Consensus 179 ~~l~~~d~dg~~~-~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l-~~~~~~~~~~~~SPDG-- 254 (429)
T PRK03629 179 YELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV-ASFPRHNGAPAFSPDG-- 254 (429)
T ss_pred eeEEEEcCCCCCC-EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEc-cCCCCCcCCeEECCCC--
Confidence 3799999865544 344556778999999999999886542 45799999988864332 2233445578999954
Q ss_pred CCcEEEEE-eCCC--eEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCC-CeEEEEEecCC
Q psy9598 575 GFNYLAST-STDG--CIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGD-HHVRVYKMDGV 650 (1915)
Q Consensus 575 d~~~L~sg-s~Dg--tI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~D-g~I~IwDl~~~ 650 (1915)
..|+.. +.+| .|.+||+.++.... +..+...+...+|+|+|+.|+.++.+ |...||.++..
T Consensus 255 --~~La~~~~~~g~~~I~~~d~~tg~~~~-------------lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~ 319 (429)
T PRK03629 255 --SKLAFALSKTGSLNLYVMDLASGQIRQ-------------VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNIN 319 (429)
T ss_pred --CEEEEEEcCCCCcEEEEEECCCCCEEE-------------ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECC
Confidence 666544 5455 58888987764211 11122456788999999988776654 55556644221
Q ss_pred CCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCC---CcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEE
Q psy9598 651 DSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRD---GTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMV 727 (1915)
Q Consensus 651 ~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~D---G~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v 727 (1915)
.. ....+..+...+.+.+|+|+|.+|+..+.+ ..|.+||+.++....+.. .......
T Consensus 320 ~g--~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~------------------~~~~~~p 379 (429)
T PRK03629 320 GG--APQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTD------------------TFLDETP 379 (429)
T ss_pred CC--CeEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeCC------------------CCCCCCc
Confidence 11 122333344456678999999998876544 358888988776432110 0112346
Q ss_pred EECCCCCEEEEEEecCC---eEEEEECCCCceEEEeeCCCCCeEEEEEcc
Q psy9598 728 AWDASDRWVITAINFNF---QIKIWDAFNGDLVQVLKGHTNEVFVLESHP 774 (1915)
Q Consensus 728 a~spdg~~L~t~s~~Dg---~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp 774 (1915)
.|+|||++|+.++. ++ .+.++++ +|.....+.+|.+.+...+|+|
T Consensus 380 ~~SpDG~~i~~~s~-~~~~~~l~~~~~-~G~~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 380 SIAPNGTMVIYSSS-QGMGSVLNLVST-DGRFKARLPATDGQVKFPAWSP 427 (429)
T ss_pred eECCCCCEEEEEEc-CCCceEEEEEEC-CCCCeEECccCCCCcCCcccCC
Confidence 79999999999887 54 3677777 5777778888988999999998
|
|
| >KOG2111|consensus | Back alignment and domain information |
|---|
Probab=99.34 E-value=9.4e-10 Score=124.03 Aligned_cols=238 Identities=13% Similarity=0.144 Sum_probs=161.7
Q ss_pred EEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCC--EEEEEEeCCCCEEE-EEeCC------CcEEEEECCC
Q psy9598 479 VFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGE--ISDIAIDNRNILLA-AGTVD------KTIRIWNLQT 549 (1915)
Q Consensus 479 V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~--I~~Lafspdg~~La-Sgs~D------gtIrVWDl~t 549 (1915)
..+++|+.|..-+++|..+| .+||++.-.+...+...+.+. |.-+-| ..++|| .||.+ ..|.|||=..
T Consensus 8 ~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLf--R~N~laLVGGg~~pky~pNkviIWDD~k 84 (346)
T KOG2111|consen 8 TLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLF--RSNYLALVGGGSRPKYPPNKVIIWDDLK 84 (346)
T ss_pred eeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhh--hhceEEEecCCCCCCCCCceEEEEeccc
Confidence 44599999998888887765 899998764443333223322 222222 223443 34433 4799999777
Q ss_pred CceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCc-cccceeccCccccccccCCCCCceEEEEECC
Q psy9598 550 LAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDI-DISKTVFHEPVMFNERIRPGNAHILCSSFSP 628 (1915)
Q Consensus 550 g~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~-~~~~~~~~~~~~~~~~~~~~~~~V~~l~fsp 628 (1915)
..++..+. ...+|.+|.+.+ ..|++.- .+.|.+|...... .+..+... .....+.+++-+.
T Consensus 85 ~~~i~el~-f~~~I~~V~l~r------~riVvvl-~~~I~VytF~~n~k~l~~~et~----------~NPkGlC~~~~~~ 146 (346)
T KOG2111|consen 85 ERCIIELS-FNSEIKAVKLRR------DRIVVVL-ENKIYVYTFPDNPKLLHVIETR----------SNPKGLCSLCPTS 146 (346)
T ss_pred CcEEEEEE-eccceeeEEEcC------CeEEEEe-cCeEEEEEcCCChhheeeeecc----------cCCCceEeecCCC
Confidence 77887775 567899999987 4555554 5679999887432 22111111 1112244444444
Q ss_pred CCcEEEE-EeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCc-EEEEEccCCceEEeeecccc
Q psy9598 629 GGLFLAT-GSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGT-ALIWYYKCSQWRFIRLDMNT 706 (1915)
Q Consensus 629 dg~~Las-gs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~-I~IWDl~~~~~~~~~~~~~~ 706 (1915)
+..+||. |-.-|.|.|-|+..... .....+.+|.+.|.||+++-+|..+||+|..|+ |+|||..++..+.-..
T Consensus 147 ~k~~LafPg~k~GqvQi~dL~~~~~-~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~R---- 221 (346)
T KOG2111|consen 147 NKSLLAFPGFKTGQVQIVDLASTKP-NAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELR---- 221 (346)
T ss_pred CceEEEcCCCccceEEEEEhhhcCc-CCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeee----
Confidence 4445554 44568999999954332 133567899999999999999999999999998 7999999988654221
Q ss_pred cCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCC
Q psy9598 707 CLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFN 753 (1915)
Q Consensus 707 ~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~t 753 (1915)
.......|.+++|||+..+|++++. .|+|+||.+..
T Consensus 222 ----------RG~d~A~iy~iaFSp~~s~LavsSd-KgTlHiF~l~~ 257 (346)
T KOG2111|consen 222 ----------RGVDRADIYCIAFSPNSSWLAVSSD-KGTLHIFSLRD 257 (346)
T ss_pred ----------cCCchheEEEEEeCCCccEEEEEcC-CCeEEEEEeec
Confidence 1224567999999999999999998 99999998864
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.6e-10 Score=142.91 Aligned_cols=235 Identities=14% Similarity=0.127 Sum_probs=152.0
Q ss_pred CcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEe---CCCeEEEEecccCccccceeccCccccccccCC
Q psy9598 540 KTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTS---TDGCIGFWKYKLDIDISKTVFHEPVMFNERIRP 616 (1915)
Q Consensus 540 gtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs---~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~ 616 (1915)
..|.+||...... ..+..+...+.+.+|+|+ ++.|+..+ .+..|.+|++.++.......+
T Consensus 179 ~~l~~~d~dg~~~-~~lt~~~~~~~~p~wSPD----G~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~------------ 241 (429)
T PRK03629 179 YELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPD----GSKLAYVTFESGRSALVIQTLANGAVRQVASF------------ 241 (429)
T ss_pred eeEEEEcCCCCCC-EEeecCCCceeeeEEcCC----CCEEEEEEecCCCcEEEEEECCCCCeEEccCC------------
Confidence 3699999876544 344456778999999995 46776654 245789999887642111111
Q ss_pred CCCceEEEEECCCCcEEEEE-eCCC--eEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCC-CcEEEE--
Q psy9598 617 GNAHILCSSFSPGGLFLATG-SGDH--HVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRD-GTALIW-- 690 (1915)
Q Consensus 617 ~~~~V~~l~fspdg~~Lasg-s~Dg--~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~D-G~I~IW-- 690 (1915)
.+.+..+.|+|||+.|+.. +.+| .|.+||+.+.. +..+..+...+...+|+|+|+.|+.++.+ |...||
T Consensus 242 -~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~----~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~ 316 (429)
T PRK03629 242 -PRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ----IRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKV 316 (429)
T ss_pred -CCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCC----EEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEE
Confidence 1223467999999988765 4444 58888884321 23344455567889999999988776654 555555
Q ss_pred EccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecC--CeEEEEECCCCceEEEeeCCCCCeE
Q psy9598 691 YYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFN--FQIKIWDAFNGDLVQVLKGHTNEVF 768 (1915)
Q Consensus 691 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~D--g~I~vwD~~tg~~i~~l~gH~~~V~ 768 (1915)
++.++....+. .....+...+|+|+|++|+.++..+ ..|.+||+.++... .+... ....
T Consensus 317 d~~~g~~~~lt-----------------~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~-~~~~ 377 (429)
T PRK03629 317 NINGGAPQRIT-----------------WEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT-FLDE 377 (429)
T ss_pred ECCCCCeEEee-----------------cCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCC-CCCC
Confidence 55444322111 1122345688999999998876523 36889999888654 33322 2234
Q ss_pred EEEEccCCCCEEEEEecCce---EEEEECCCCccccceeeeeeecCCCCcceEEEEEcC
Q psy9598 769 VLESHPFDSRVLLSAGHDGL---IIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSP 824 (1915)
Q Consensus 769 sl~~sp~dg~~LaSgs~DG~---I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSp 824 (1915)
...|+| ||.+|+.++.++. +.+|++..... ..+. .+.+.+...+|+|
T Consensus 378 ~p~~Sp-DG~~i~~~s~~~~~~~l~~~~~~G~~~---~~l~-----~~~~~~~~p~Wsp 427 (429)
T PRK03629 378 TPSIAP-NGTMVIYSSSQGMGSVLNLVSTDGRFK---ARLP-----ATDGQVKFPAWSP 427 (429)
T ss_pred CceECC-CCCEEEEEEcCCCceEEEEEECCCCCe---EECc-----cCCCCcCCcccCC
Confidence 678999 9999999888764 67777754333 2222 2456788888987
|
|
| >KOG1912|consensus | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.5e-10 Score=141.78 Aligned_cols=363 Identities=14% Similarity=0.137 Sum_probs=232.0
Q ss_pred CcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCC------------CCEEEEEeCCCcEEE
Q psy9598 477 SAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNR------------NILLAAGTVDKTIRI 544 (1915)
Q Consensus 477 ~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspd------------g~~LaSgs~DgtIrV 544 (1915)
+.-.++.|+|.| +||-|+.. .|.|-|..+.+.+.++..|...|+.+.|.|- .-+||++...|.|.|
T Consensus 16 sN~~A~Dw~~~G-LiAygshs-lV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil 93 (1062)
T KOG1912|consen 16 SNRNAADWSPSG-LIAYGSHS-LVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIIL 93 (1062)
T ss_pred ccccccccCccc-eEEEecCc-eEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEE
Confidence 345678899876 77777755 8999999999999999999999999999773 126778888899999
Q ss_pred EECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccc----------c
Q psy9598 545 WNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNER----------I 614 (1915)
Q Consensus 545 WDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~----------~ 614 (1915)
||+..+..+..+..|..+|..++|.+........|++-....+|.+|+..+|...............-. +
T Consensus 94 ~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~ 173 (1062)
T KOG1912|consen 94 VDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCV 173 (1062)
T ss_pred EEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEE
Confidence 999999999999999999999999997644447788888889999999998876554433210000000 0
Q ss_pred CCCCCceEE-----------------------------------------------------EEECCCCcEEEEEeCCCe
Q psy9598 615 RPGNAHILC-----------------------------------------------------SSFSPGGLFLATGSGDHH 641 (1915)
Q Consensus 615 ~~~~~~V~~-----------------------------------------------------l~fspdg~~Lasgs~Dg~ 641 (1915)
.+..+.+.. ++|+|.-+.++.......
T Consensus 174 l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~pre 253 (1062)
T KOG1912|consen 174 LGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRE 253 (1062)
T ss_pred EccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccc
Confidence 000011111 123333222223333344
Q ss_pred EEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCC--EEEEEeCCCcEEEEEccC----------------CceEEeeec
Q psy9598 642 VRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHL--RFVSGSRDGTALIWYYKC----------------SQWRFIRLD 703 (1915)
Q Consensus 642 I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~--~L~sgs~DG~I~IWDl~~----------------~~~~~~~~~ 703 (1915)
+.|+|+ .-..++....-..+.+.-+.+-|+++ .|+++..||.+.||-.+. +........
T Consensus 254 llv~dl---e~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~ 330 (1062)
T KOG1912|consen 254 LLVFDL---EYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRP 330 (1062)
T ss_pred eEEEcc---hhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEee
Confidence 455554 11222222222344455566666654 789999999999995443 110000000
Q ss_pred ccc-------cCCC----------------------------------------------------CccccccccccccE
Q psy9598 704 MNT-------CLPH----------------------------------------------------TKETSDETNKKIKV 724 (1915)
Q Consensus 704 ~~~-------~~~~----------------------------------------------------~~~~~~~~~~~~~V 724 (1915)
+.. +.+. .........|....
T Consensus 331 m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs 410 (1062)
T KOG1912|consen 331 MEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSSGS 410 (1062)
T ss_pred chhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccccccCceeehhhccccchhhcCCCCCCc
Confidence 000 0000 00000111223333
Q ss_pred EEEEECC-----------CCC-------EEEEEEecCCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEEe--
Q psy9598 725 TMVAWDA-----------SDR-------WVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAG-- 784 (1915)
Q Consensus 725 ~~va~sp-----------dg~-------~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs-- 784 (1915)
+++...| .|+ .++.|.. .|+|.|+|+.++.....+..|.+.|.++.|.. .. .|++.+
T Consensus 411 ~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~-sGTV~vvdvst~~v~~~fsvht~~VkgleW~g-~s-slvSfsys 487 (1062)
T KOG1912|consen 411 TCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTN-SGTVDVVDVSTNAVAASFSVHTSLVKGLEWLG-NS-SLVSFSYS 487 (1062)
T ss_pred eeeecccCcccceeecCCCCCccceeeeeEEeecC-CceEEEEEecchhhhhhhcccccceeeeeecc-ce-eEEEeeec
Confidence 3332222 222 3455666 99999999999999999999999999999986 33 344433
Q ss_pred --------cCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccccc
Q psy9598 785 --------HDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGGFKRPQN 851 (1915)
Q Consensus 785 --------~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl~s~~~~~~ 851 (1915)
.-+.+.|-|+.+|.....+.+ .+....+|..+..|.-|++|+..-.+..+-||++.+..++..
T Consensus 488 ~~n~~sg~vrN~l~vtdLrtGlsk~fR~l----~~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~lr~ 558 (1062)
T KOG1912|consen 488 HVNSASGGVRNDLVVTDLRTGLSKRFRGL----QKPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRMLRL 558 (1062)
T ss_pred cccccccceeeeEEEEEcccccccccccC----CCCCcCcceeeeecccCceEEEEecccchHHHhhccchHHHH
Confidence 234577889998876333322 234557999999999999999999999999999977655443
|
|
| >KOG1409|consensus | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.5e-11 Score=136.11 Aligned_cols=337 Identities=13% Similarity=0.165 Sum_probs=229.0
Q ss_pred eeeeEEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEE-CCCCcEEEEEe-CCCCCEEEEEEeCCCCEEEEEeCCCcEE
Q psy9598 466 LRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWR-ARDGKLLATLR-GCSGEISDIAIDNRNILLAAGTVDKTIR 543 (1915)
Q Consensus 466 ~~~~~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd-~~tg~~~~~l~-gH~~~I~~Lafspdg~~LaSgs~DgtIr 543 (1915)
..+.+.+.||.+.|+....-|-..-+++.+.|.+|+||- ...|+--..+. .-..+++++.+.++...|+.|-.+|++.
T Consensus 14 p~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvt 93 (404)
T KOG1409|consen 14 PELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVT 93 (404)
T ss_pred hhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEE
Confidence 334567889999999999999888899999999999995 34444333332 2356789999999999999999999999
Q ss_pred EEECC----CCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCC
Q psy9598 544 IWNLQ----TLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNA 619 (1915)
Q Consensus 544 VWDl~----tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (1915)
-+.+. ....+.....|.+.|..+.|+-.. ..+++++.|..+..--.+.+..+....+..+.
T Consensus 94 efs~sedfnkm~~~r~~~~h~~~v~~~if~~~~----e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~----------- 158 (404)
T KOG1409|consen 94 EFALSEDFNKMTFLKDYLAHQARVSAIVFSLTH----EWVLSTGKDKQFAWHCTESGNRLGGYNFETPA----------- 158 (404)
T ss_pred EEEhhhhhhhcchhhhhhhhhcceeeEEecCCc----eeEEEeccccceEEEeeccCCcccceEeeccC-----------
Confidence 88764 344556667899999999998744 89999999988766555555444333332111
Q ss_pred ceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEE
Q psy9598 620 HILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRF 699 (1915)
Q Consensus 620 ~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~ 699 (1915)
+++.|.-. +...|...|.|.+..+. ......+..+.+|.+.+.+++|.+....|++|..|..|.+||+....-..
T Consensus 159 --t~~~~d~~--~~fvGd~~gqvt~lr~~-~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~ 233 (404)
T KOG1409|consen 159 --SALQFDAL--YAFVGDHSGQITMLKLE-QNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTA 233 (404)
T ss_pred --CCCceeeE--EEEecccccceEEEEEe-ecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCccee
Confidence 11111111 55566667777776663 34566788899999999999999999999999999999999987654222
Q ss_pred eeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEE---------------------
Q psy9598 700 IRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQ--------------------- 758 (1915)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~--------------------- 758 (1915)
....+|...|..++.-+--+.+++++. ||.|-+|+........
T Consensus 234 ---------------~el~gh~~kV~~l~~~~~t~~l~S~~e-dg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~ 297 (404)
T KOG1409|consen 234 ---------------YELQGHNDKVQALSYAQHTRQLISCGE-DGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFR 297 (404)
T ss_pred ---------------eeeccchhhhhhhhhhhhheeeeeccC-CCeEEEEeccceeecCccccccchhhhhCchHHHHHH
Confidence 123456677777777777778888888 9999999986321100
Q ss_pred --------EeeCC----C-CCeEEEEEccCCCCEEEEEecCceEEEEECCCCcc-----ccceeeeeeecCCCCcceEEE
Q psy9598 759 --------VLKGH----T-NEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQ-----RGYKWFHNIVEGQGEGALFDG 820 (1915)
Q Consensus 759 --------~l~gH----~-~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~-----~~~~~~~~~~~~~~~~~V~~v 820 (1915)
-+..| . ..|...+-+ ......+-|..-.+++-|--.... ..+..++ ..+..|+.+
T Consensus 298 ~m~~~k~~glr~h~crkcg~avc~~c~s--~~~~~p~mg~e~~vR~~~~c~~~i~~~~~t~LA~ph-----ei~tgItam 370 (404)
T KOG1409|consen 298 QMWDRKQLGLRQHHCRKCGKAVCGKCSS--NRSSYPTMGFEFSVRVCDSCYPTIKDEERTPLAIPH-----EIKTGITAM 370 (404)
T ss_pred HHHhhhhhhhhhhhhhhhhhhcCccccc--CccccccccceeEEEEecccchhhhcCCCCcccccc-----ccccceeEE
Confidence 00111 1 122222211 122233333333445444321111 1123232 334578899
Q ss_pred EEcCCCCEEEEEeCCCeEEEEeCCC
Q psy9598 821 KWSPDGTTCALTDSYGHLLVYGLGG 845 (1915)
Q Consensus 821 afSpdg~~Lasg~~dG~I~Iwdl~s 845 (1915)
.+..+-.+|++++.|..|+|||+.+
T Consensus 371 hlqetlglLvTsG~~Rvi~iwd~~~ 395 (404)
T KOG1409|consen 371 HLQETLGLLVTSGTDRVIKIWDVRS 395 (404)
T ss_pred EhhhhccceeecCCceEEEEEechh
Confidence 9999999999999999999999875
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.1e-10 Score=146.51 Aligned_cols=235 Identities=14% Similarity=0.095 Sum_probs=151.8
Q ss_pred CcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeC---CCeEEEEecccCccccceeccCccccccccCC
Q psy9598 540 KTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTST---DGCIGFWKYKLDIDISKTVFHEPVMFNERIRP 616 (1915)
Q Consensus 540 gtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~---DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~ 616 (1915)
..|.|||... .....+..|...+.+.+|+|+ ++.|+.++. ...|.+||+.++...... .
T Consensus 184 ~~l~i~D~~g-~~~~~lt~~~~~v~~p~wSpD----g~~la~~s~~~~~~~l~~~dl~~g~~~~l~-------------~ 245 (433)
T PRK04922 184 YALQVADSDG-YNPQTILRSAEPILSPAWSPD----GKKLAYVSFERGRSAIYVQDLATGQRELVA-------------S 245 (433)
T ss_pred EEEEEECCCC-CCceEeecCCCccccccCCCC----CCEEEEEecCCCCcEEEEEECCCCCEEEec-------------c
Confidence 4699999864 444556667778999999994 477777764 346999999876431111 1
Q ss_pred CCCceEEEEECCCCcEEE-EEeCCC--eEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEe-CCCc--EEEE
Q psy9598 617 GNAHILCSSFSPGGLFLA-TGSGDH--HVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGS-RDGT--ALIW 690 (1915)
Q Consensus 617 ~~~~V~~l~fspdg~~La-sgs~Dg--~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs-~DG~--I~IW 690 (1915)
..+...++.|+|+|+.|+ +.+.+| .|++||+.+.. +..+..+......++|+|+|..|+.++ .+|. |.++
T Consensus 246 ~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~----~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~ 321 (433)
T PRK04922 246 FRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQ----LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRV 321 (433)
T ss_pred CCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCC----eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEE
Confidence 113345789999998775 445555 58888884322 334455555567889999999888766 4555 5555
Q ss_pred EccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCC--eEEEEECCCCceEEEeeCCCCCeE
Q psy9598 691 YYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNF--QIKIWDAFNGDLVQVLKGHTNEVF 768 (1915)
Q Consensus 691 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg--~I~vwD~~tg~~i~~l~gH~~~V~ 768 (1915)
++.+++...+.. .......++|+|+|++|+.++..++ .|.+||+.++... .+. +.....
T Consensus 322 dl~~g~~~~lt~-----------------~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~ 382 (433)
T PRK04922 322 AASGGSAERLTF-----------------QGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDE 382 (433)
T ss_pred ECCCCCeEEeec-----------------CCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCC
Confidence 665555332110 1122345899999999988765232 6999999888765 333 323455
Q ss_pred EEEEccCCCCEEEEEecC---ceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcC
Q psy9598 769 VLESHPFDSRVLLSAGHD---GLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSP 824 (1915)
Q Consensus 769 sl~~sp~dg~~LaSgs~D---G~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSp 824 (1915)
...|+| ++++|+..+.+ +.|.+|++..+.. ..+. .+.+.+...+|+|
T Consensus 383 ~p~~sp-dG~~i~~~s~~~g~~~L~~~~~~g~~~---~~l~-----~~~g~~~~p~wsp 432 (433)
T PRK04922 383 SPSFAP-NGSMVLYATREGGRGVLAAVSTDGRVR---QRLV-----SADGEVREPAWSP 432 (433)
T ss_pred CceECC-CCCEEEEEEecCCceEEEEEECCCCce---EEcc-----cCCCCCCCCccCC
Confidence 678999 88877766653 4678888854332 2221 2335667778876
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=2e-10 Score=146.38 Aligned_cols=239 Identities=15% Similarity=0.114 Sum_probs=158.5
Q ss_pred CcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCC---CcEEEEECCCCceEEEeecCCCCeEEEEeccCccC
Q psy9598 498 LLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVD---KTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVN 574 (1915)
Q Consensus 498 g~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~D---gtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~ 574 (1915)
..|.+||. +|.....+..+...+.+.+|+|||+.|+.++.+ ..|.+||+.++.... +....+.+.+.+|+|++
T Consensus 176 ~~L~~~D~-dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG-- 251 (427)
T PRK02889 176 YQLQISDA-DGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDG-- 251 (427)
T ss_pred cEEEEECC-CCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCC--
Confidence 46777786 455555566788889999999999999887643 459999999887643 33344566789999953
Q ss_pred CCcEE-EEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeC-CCeEEEEEecCCCC
Q psy9598 575 GFNYL-ASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSG-DHHVRVYKMDGVDS 652 (1915)
Q Consensus 575 d~~~L-~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~-Dg~I~IwDl~~~~~ 652 (1915)
..| ++.+.+|...||.+....... ..+..+.......+|+|||+.|+..+. +|...||.+.....
T Consensus 252 --~~la~~~~~~g~~~Iy~~d~~~~~~-----------~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g 318 (427)
T PRK02889 252 --RTLAVALSRDGNSQIYTVNADGSGL-----------RRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGG 318 (427)
T ss_pred --CEEEEEEccCCCceEEEEECCCCCc-----------EECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCC
Confidence 555 467788887777654321100 011122234556789999998876554 46777777642222
Q ss_pred CceeEEeccCCCCeeEEEEcCCCCEEEEEeCCC---cEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEE
Q psy9598 653 PLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDG---TALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAW 729 (1915)
Q Consensus 653 ~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG---~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~ 729 (1915)
......+ +.......+|+|+|++|+.++.++ .|.+||+.++....+. ........+|
T Consensus 319 ~~~~lt~--~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt------------------~~~~~~~p~~ 378 (427)
T PRK02889 319 AAQRVTF--TGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALT------------------DTTRDESPSF 378 (427)
T ss_pred ceEEEec--CCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEcc------------------CCCCccCceE
Confidence 1112222 223345678999999998777654 5999999887643211 0011245789
Q ss_pred CCCCCEEEEEEecCC--eEEEEECCCCceEEEeeCCCCCeEEEEEcc
Q psy9598 730 DASDRWVITAINFNF--QIKIWDAFNGDLVQVLKGHTNEVFVLESHP 774 (1915)
Q Consensus 730 spdg~~L~t~s~~Dg--~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp 774 (1915)
+|+|+.|+.++...| .+.+.++ +|.....+..+.+.+...+|+|
T Consensus 379 spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~g~~~~p~wsp 424 (427)
T PRK02889 379 APNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQGGDVREPSWGP 424 (427)
T ss_pred CCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecCCCCCCCCccCC
Confidence 999999998886344 3566666 5777777777778888888988
|
|
| >KOG3881|consensus | Back alignment and domain information |
|---|
Probab=99.31 E-value=8.8e-11 Score=135.33 Aligned_cols=247 Identities=16% Similarity=0.209 Sum_probs=177.7
Q ss_pred CCCEEEEEEeCCCC--EEEEEeCCCcEEEEECCCCceEEE------eecCCCCeEEEEeccCccCCCcEEEEEeCCCeEE
Q psy9598 518 SGEISDIAIDNRNI--LLAAGTVDKTIRIWNLQTLAPISV------LVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIG 589 (1915)
Q Consensus 518 ~~~I~~Lafspdg~--~LaSgs~DgtIrVWDl~tg~~~~~------l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~ 589 (1915)
...|+.++|.-+++ .|...+.|..+..+.+..+.+... ....+++|-.++... ..|++|-.+|.+.
T Consensus 55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~d------g~Litc~~sG~l~ 128 (412)
T KOG3881|consen 55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLAD------GTLITCVSSGNLQ 128 (412)
T ss_pred hhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhcC------CEEEEEecCCcEE
Confidence 34577777765543 455555666677766665444333 334567777777765 6889999999999
Q ss_pred EEecccCccccceeccCccccccccCCCCCceEEEEECCCCc-EEEEEeCC--CeEEEEEecCCCCCceeEEeccC----
Q psy9598 590 FWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGL-FLATGSGD--HHVRVYKMDGVDSPLGILEVEEH---- 662 (1915)
Q Consensus 590 iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~-~Lasgs~D--g~I~IwDl~~~~~~~~i~~l~~h---- 662 (1915)
+|....+....... ..+.. ...+..+.-++... ++++||.. ..+.|||+... ..+..-..-
T Consensus 129 ~~~~k~~d~hss~l--------~~la~-g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~---~qiw~aKNvpnD~ 196 (412)
T KOG3881|consen 129 VRHDKSGDLHSSKL--------IKLAT-GPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQS---KQIWSAKNVPNDR 196 (412)
T ss_pred EEeccCCccccccc--------eeeec-CCceeeeccCCCCCceEecCchhcccceeeeecccc---eeeeeccCCCCcc
Confidence 99988553210000 00111 14455566666444 55668888 78999999533 333332221
Q ss_pred -----CCCeeEEEEcCC--CCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCE
Q psy9598 663 -----SDKVDSIQWSHS--HLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRW 735 (1915)
Q Consensus 663 -----~~~V~sl~fspd--g~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~ 735 (1915)
.-.++++.|-+. ...|++++.-+.|++||.+.+.... .........|+++...|+|++
T Consensus 197 L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV---------------~~fd~~E~~is~~~l~p~gn~ 261 (412)
T KOG3881|consen 197 LGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPV---------------AQFDFLENPISSTGLTPSGNF 261 (412)
T ss_pred ccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcce---------------eEeccccCcceeeeecCCCcE
Confidence 124677889887 7899999999999999998665222 122234678999999999999
Q ss_pred EEEEEecCCeEEEEECCCCceEEE-eeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCcc
Q psy9598 736 VITAINFNFQIKIWDAFNGDLVQV-LKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQ 799 (1915)
Q Consensus 736 L~t~s~~Dg~I~vwD~~tg~~i~~-l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~ 799 (1915)
|++|.. -|.+..||++.+.++.. +.|-.+.|.+|..|| ...+|++||-|..|+|+|+.+.++
T Consensus 262 Iy~gn~-~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp-~~~~las~GLDRyvRIhD~ktrkl 324 (412)
T KOG3881|consen 262 IYTGNT-KGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHP-THPVLASCGLDRYVRIHDIKTRKL 324 (412)
T ss_pred EEEecc-cchhheecccCceeeccccCCccCCcceEEEcC-CCceEEeeccceeEEEeecccchh
Confidence 999988 99999999999998887 889999999999999 889999999999999999998665
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.1e-10 Score=145.04 Aligned_cols=235 Identities=14% Similarity=0.029 Sum_probs=155.8
Q ss_pred CcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCC---CcEEEEECCCCceEEEeecCCCCeEEEEeccCccC
Q psy9598 498 LLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVD---KTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVN 574 (1915)
Q Consensus 498 g~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~D---gtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~ 574 (1915)
..|.|||.. +.....+..|...|.+.+|+|||+.|+.++.. ..|.+||+.++.... +..+.+...++.|+|++
T Consensus 184 ~~l~i~D~~-g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG-- 259 (433)
T PRK04922 184 YALQVADSD-GYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDG-- 259 (433)
T ss_pred EEEEEECCC-CCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCC--
Confidence 469999985 44445566677889999999999999987743 469999998887543 33445556688999953
Q ss_pred CCcEE-EEEeCCC--eEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeC-CCe--EEEEEec
Q psy9598 575 GFNYL-ASTSTDG--CIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSG-DHH--VRVYKMD 648 (1915)
Q Consensus 575 d~~~L-~sgs~Dg--tI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~-Dg~--I~IwDl~ 648 (1915)
..| ++.+.+| .|.+||+.++.... + ..+.......+|+|+|+.|+.++. +|. |.++++.
T Consensus 260 --~~l~~~~s~~g~~~Iy~~d~~~g~~~~-l------------t~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~ 324 (433)
T PRK04922 260 --RRLALTLSRDGNPEIYVMDLGSRQLTR-L------------TNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAAS 324 (433)
T ss_pred --CEEEEEEeCCCCceEEEEECCCCCeEE-C------------ccCCCCccceEECCCCCEEEEEECCCCCceEEEEECC
Confidence 544 5556665 58889988764211 1 112233456899999998887664 455 5555553
Q ss_pred CCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCC---cEEEEEccCCceEEeeecccccCCCCccccccccccccEE
Q psy9598 649 GVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDG---TALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVT 725 (1915)
Q Consensus 649 ~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG---~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~ 725 (1915)
+. . ...+..+......++|+|+|.+|+..+.++ .|.+||+.++....+. +.....
T Consensus 325 ~g-~---~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt------------------~~~~~~ 382 (433)
T PRK04922 325 GG-S---AERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRTLT------------------PGSLDE 382 (433)
T ss_pred CC-C---eEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEECC------------------CCCCCC
Confidence 22 1 112222333455789999999988765443 5899998877643211 001123
Q ss_pred EEEECCCCCEEEEEEecC--CeEEEEECCCCceEEEeeCCCCCeEEEEEcc
Q psy9598 726 MVAWDASDRWVITAINFN--FQIKIWDAFNGDLVQVLKGHTNEVFVLESHP 774 (1915)
Q Consensus 726 ~va~spdg~~L~t~s~~D--g~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp 774 (1915)
..+|+|+|++|+.++... +.|.++++. +.....+..+.+.+...+|+|
T Consensus 383 ~p~~spdG~~i~~~s~~~g~~~L~~~~~~-g~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 383 SPSFAPNGSMVLYATREGGRGVLAAVSTD-GRVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred CceECCCCCEEEEEEecCCceEEEEEECC-CCceEEcccCCCCCCCCccCC
Confidence 468999999988777522 358888884 555666666667788888887
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=7.8e-10 Score=141.58 Aligned_cols=235 Identities=13% Similarity=0.075 Sum_probs=155.8
Q ss_pred CcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeC---CCcEEEEECCCCceEEEeecCCCCeEEEEeccCccC
Q psy9598 498 LLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTV---DKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVN 574 (1915)
Q Consensus 498 g~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~---DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~ 574 (1915)
..|.+||.. |.....+..|...|.+.+|+|||+.|+..+. +..|.+||+.++... .+..+.+.+.+.+|+|++
T Consensus 182 ~~l~~~d~d-g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG-- 257 (435)
T PRK05137 182 KRLAIMDQD-GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDG-- 257 (435)
T ss_pred eEEEEECCC-CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCC--
Confidence 378899974 4555667778889999999999999888763 468999999988753 455566778899999953
Q ss_pred CCcEEEEEeCCCe--EEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeC-CC--eEEEEEecC
Q psy9598 575 GFNYLASTSTDGC--IGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSG-DH--HVRVYKMDG 649 (1915)
Q Consensus 575 d~~~L~sgs~Dgt--I~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~-Dg--~I~IwDl~~ 649 (1915)
..++++.+.+|. |.+||+.++... . +..+.....+.+|+|+|..|+..+. +| .|++||+.+
T Consensus 258 -~~la~~~~~~g~~~Iy~~d~~~~~~~-~------------Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g 323 (435)
T PRK05137 258 -RKVVMSLSQGGNTDIYTMDLRSGTTT-R------------LTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADG 323 (435)
T ss_pred -CEEEEEEecCCCceEEEEECCCCceE-E------------ccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCC
Confidence 234456666665 666677665321 1 1122344567899999998887664 33 577777643
Q ss_pred CCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCC---CcEEEEEccCCceEEeeecccccCCCCccccccccccccEEE
Q psy9598 650 VDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRD---GTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTM 726 (1915)
Q Consensus 650 ~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~D---G~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~ 726 (1915)
. . ...+..+.+.+....|+|+|..|+..+.+ ..|.+||+.++....+. ....+..
T Consensus 324 ~-~---~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~lt------------------~~~~~~~ 381 (435)
T PRK05137 324 S-N---PRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERILT------------------SGFLVEG 381 (435)
T ss_pred C-C---eEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceEecc------------------CCCCCCC
Confidence 2 1 22233345556778899999998877654 25777777554322110 0112456
Q ss_pred EEECCCCCEEEEEEecC-----CeEEEEECCCCceEEEeeCCCCCeEEEEEcc
Q psy9598 727 VAWDASDRWVITAINFN-----FQIKIWDAFNGDLVQVLKGHTNEVFVLESHP 774 (1915)
Q Consensus 727 va~spdg~~L~t~s~~D-----g~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp 774 (1915)
+.|+|||+.|+..+... ..|+++|+..+.. ..+. ..+.+...+|+|
T Consensus 382 p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~-~~~~~~~p~Wsp 432 (435)
T PRK05137 382 PTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVP-TPGDASDPAWSP 432 (435)
T ss_pred CeECCCCCEEEEEEccCCCCCcceEEEEECCCCce-EEcc-CCCCccCcccCC
Confidence 89999999988766522 3688888865544 4444 344567777877
|
|
| >KOG0974|consensus | Back alignment and domain information |
|---|
Probab=99.27 E-value=4.7e-10 Score=143.23 Aligned_cols=141 Identities=19% Similarity=0.226 Sum_probs=121.7
Q ss_pred cccccCCCeEEEecccCCceeeeEEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEE-EEeCCCCCEEEEE
Q psy9598 447 EYSGPLSRSLMISSHKYSNLRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLA-TLRGCSGEISDIA 525 (1915)
Q Consensus 447 ~~tg~~d~~~~i~~~~~~~~~~~~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~-~l~gH~~~I~~La 525 (1915)
.++|..-+.+++|.....+... .+.||.+.|.++.|+-||+++|+.|+|.+|++|++.+++... +.-||++.|..++
T Consensus 148 i~~gsv~~~iivW~~~~dn~p~--~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~ 225 (967)
T KOG0974|consen 148 IASGSVFGEIIVWKPHEDNKPI--RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACC 225 (967)
T ss_pred EEeccccccEEEEeccccCCcc--eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEE
Confidence 3467788899999877444333 789999999999999999999999999999999999997766 7779999999999
Q ss_pred EeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCCC-CeEEEEeccCccCCCcEEEEEeCCCeEEEEecccC
Q psy9598 526 IDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQG-IITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLD 596 (1915)
Q Consensus 526 fspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~-~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~ 596 (1915)
|.+. .|+|++.|.+.++|+.. +..+..+.+|.+ .|+.++..+. ...+++++.||.+++|++...
T Consensus 226 ~~~n--~i~t~gedctcrvW~~~-~~~l~~y~~h~g~~iw~~~~~~~----~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 226 FLPN--RIITVGEDCTCRVWGVN-GTQLEVYDEHSGKGIWKIAVPIG----VIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred eccc--eeEEeccceEEEEEecc-cceehhhhhhhhcceeEEEEcCC----ceEEEeeccCcchhhhhhhcc
Confidence 9998 99999999999999765 455568888874 7999999884 489999999999999998654
|
|
| >KOG2394|consensus | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.2e-10 Score=138.27 Aligned_cols=193 Identities=17% Similarity=0.257 Sum_probs=142.0
Q ss_pred CCCCEEEEEECCCcEEEEECCCCcEEEEEe----CCCCCEEEEEEeCCC-CEEEEEeCCCcEEEEECCC-----------
Q psy9598 486 KLGEVIVTGADDLLIKLWRARDGKLLATLR----GCSGEISDIAIDNRN-ILLAAGTVDKTIRIWNLQT----------- 549 (1915)
Q Consensus 486 pdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~----gH~~~I~~Lafspdg-~~LaSgs~DgtIrVWDl~t----------- 549 (1915)
+.|--|+.|-..|.|.+.|.........+. -....|+||.|-|.+ ..++++-.+|.+.++|..-
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~ 262 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQA 262 (636)
T ss_pred CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccc
Confidence 567778888888899988876532211111 123689999998854 3555566789999997631
Q ss_pred ---C--------------ceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCcccccc
Q psy9598 550 ---L--------------APISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNE 612 (1915)
Q Consensus 550 ---g--------------~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~ 612 (1915)
+ .++..+.-..+.|+.++|+| ++.+|++.|.||.++|||..+...+..+.
T Consensus 263 ~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~----DG~~LA~VSqDGfLRvF~fdt~eLlg~mk--------- 329 (636)
T KOG2394|consen 263 LKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSP----DGKYLATVSQDGFLRIFDFDTQELLGVMK--------- 329 (636)
T ss_pred cCCCCeeEEeeeeccccCCccceeEeccccccceeEcC----CCceEEEEecCceEEEeeccHHHHHHHHH---------
Confidence 1 12222333446788999998 56999999999999999998775432221
Q ss_pred ccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcC-------------------
Q psy9598 613 RIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSH------------------- 673 (1915)
Q Consensus 613 ~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fsp------------------- 673 (1915)
.--+...|++|||||++|++|+.|-.|.||.+ .....+..-++|.++|..|+|.|
T Consensus 330 ---SYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf---~erRVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~ 403 (636)
T KOG2394|consen 330 ---SYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSF---EERRVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFS 403 (636)
T ss_pred ---hhccceEEEEEcCCccEEEecCCcceEEEEEe---ccceEEEeccccccceeeEeeccccccccccccccccccccc
Confidence 12367899999999999999999999999999 44566777789999999999982
Q ss_pred ------------C----C-------------CEEEEEeCCCcEEEEEccCCce
Q psy9598 674 ------------S----H-------------LRFVSGSRDGTALIWYYKCSQW 697 (1915)
Q Consensus 674 ------------d----g-------------~~L~sgs~DG~I~IWDl~~~~~ 697 (1915)
+ + -+|.+.+.|..+.+||+.....
T Consensus 404 ~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~L 456 (636)
T KOG2394|consen 404 DVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDVL 456 (636)
T ss_pred chhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEEEecchhhc
Confidence 0 1 1577889999999999986553
|
|
| >KOG1354|consensus | Back alignment and domain information |
|---|
Probab=99.26 E-value=2e-10 Score=129.68 Aligned_cols=269 Identities=18% Similarity=0.225 Sum_probs=169.4
Q ss_pred CCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCc-----EEEEEeCCC------------CCEEEEEEeCCCC--EEEEE
Q psy9598 476 LSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGK-----LLATLRGCS------------GEISDIAIDNRNI--LLAAG 536 (1915)
Q Consensus 476 ~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~-----~~~~l~gH~------------~~I~~Lafspdg~--~LaSg 536 (1915)
.+-|.||.|+.+|.+||||..+|.|.+|.-.... ....+..|. ..|+.|.|.++++ .++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 4678999999999999999999999999643221 344555564 3588899988754 55566
Q ss_pred eCCCcEEEEECCCCc-----------------------------------eEEEe-ecCCCCeEEEEeccCccCCCcEEE
Q psy9598 537 TVDKTIRIWNLQTLA-----------------------------------PISVL-VGHQGIITGVNFCPLEVNGFNYLA 580 (1915)
Q Consensus 537 s~DgtIrVWDl~tg~-----------------------------------~~~~l-~~h~~~V~sl~fsp~~~~d~~~L~ 580 (1915)
+.|.+|++|.+.... |...+ .+|+..|++|.++.+ ..+++
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD----~Et~l 180 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSD----KETFL 180 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCc----cceEe
Confidence 779999999875210 01111 257888999999874 36666
Q ss_pred EEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCC-CcEEEEEeCCCeEEEEEecCCCCC---cee
Q psy9598 581 STSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPG-GLFLATGSGDHHVRVYKMDGVDSP---LGI 656 (1915)
Q Consensus 581 sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspd-g~~Lasgs~Dg~I~IwDl~~~~~~---~~i 656 (1915)
++ .|=.|.+|++.-......+.--.|..+.. -..-|++..|+|. .+.++-.+..|+|++.|++...-. ..+
T Consensus 181 SA-DdLRINLWnlei~d~sFnIVDIKP~nmEe----LteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKl 255 (433)
T KOG1354|consen 181 SA-DDLRINLWNLEIIDQSFNIVDIKPANMEE----LTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKL 255 (433)
T ss_pred ec-cceeeeeccccccCCceeEEEccccCHHH----HHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhh
Confidence 55 46789999886543222221112221111 1245788889995 457778888999999999632111 111
Q ss_pred E----------EeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEE
Q psy9598 657 L----------EVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTM 726 (1915)
Q Consensus 657 ~----------~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~ 726 (1915)
. -+.+--..|..|.|+++|+++++-.. -+|+|||+...........+...+.......-.......-..
T Consensus 256 fEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFe 334 (433)
T KOG1354|consen 256 FEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFE 334 (433)
T ss_pred hccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeE
Confidence 1 11222356888999999999987643 689999985433111111111100000000001111122346
Q ss_pred EEECCCCCEEEEEEecCCeEEEEECCCCc
Q psy9598 727 VAWDASDRWVITAINFNFQIKIWDAFNGD 755 (1915)
Q Consensus 727 va~spdg~~L~t~s~~Dg~I~vwD~~tg~ 755 (1915)
++|+.++.++++|+. ...+++|++..|.
T Consensus 335 c~~sg~~~~v~TGsy-~n~frvf~~~~gs 362 (433)
T KOG1354|consen 335 CSWSGNDSYVMTGSY-NNVFRVFNLARGS 362 (433)
T ss_pred EEEcCCcceEecccc-cceEEEecCCCCc
Confidence 899999999999998 8999999976553
|
|
| >KOG0974|consensus | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.3e-09 Score=139.40 Aligned_cols=183 Identities=17% Similarity=0.214 Sum_probs=139.9
Q ss_pred CccccccCCCeEEEecccCCceeeeEEecCCCCc-----EEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCC
Q psy9598 445 SREYSGPLSRSLMISSHKYSNLRQHYVNLGHLSA-----VFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSG 519 (1915)
Q Consensus 445 ~r~~tg~~d~~~~i~~~~~~~~~~~~~l~gH~~~-----V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~ 519 (1915)
.+.+.+..++.+.++++.-..+-. .+ .|... ..-+.++++.-++++|+.-+.|.+|....-+.-..+.||.+
T Consensus 100 k~i~l~~~~ns~~i~d~~~~~~~~--~i-~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG 176 (967)
T KOG0974|consen 100 KKIALVTSRNSLLIRDSKNSSVLS--KI-QSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEG 176 (967)
T ss_pred ceEEEEEcCceEEEEecccCceeh--hc-CCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcceecccCC
Confidence 344556667777777654433221 12 22221 22233577788999999999999999874433336899999
Q ss_pred CEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEE-EeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCcc
Q psy9598 520 EISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPIS-VLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDID 598 (1915)
Q Consensus 520 ~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~-~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~ 598 (1915)
.|.++.|+.||.++++.|.|.+||+|++.+.+... +..+|++.|+.+.|.| +.+++++.|.+.++|+......
T Consensus 177 ~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~------n~i~t~gedctcrvW~~~~~~l 250 (967)
T KOG0974|consen 177 SIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLP------NRIITVGEDCTCRVWGVNGTQL 250 (967)
T ss_pred ceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEecc------ceeEEeccceEEEEEeccccee
Confidence 99999999999999999999999999999988766 7779999999999998 5999999999999997654422
Q ss_pred ccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEec
Q psy9598 599 ISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMD 648 (1915)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~ 648 (1915)
..+. ... ...|..++..++...++|++.||.+++|++.
T Consensus 251 -~~y~--------~h~---g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~ 288 (967)
T KOG0974|consen 251 -EVYD--------EHS---GKGIWKIAVPIGVIIKVTGGNDSTLKLWDLN 288 (967)
T ss_pred -hhhh--------hhh---hcceeEEEEcCCceEEEeeccCcchhhhhhh
Confidence 1111 111 2458899999999999999999999999985
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.23 E-value=4.8e-08 Score=121.12 Aligned_cols=295 Identities=16% Similarity=0.132 Sum_probs=182.6
Q ss_pred EEEEECC----CcEEEEEC--CCCcEE--EEEeCCCCCEEEEEEeCCCCEEEEEeC----CCcEEEEECCCC--ce--EE
Q psy9598 491 IVTGADD----LLIKLWRA--RDGKLL--ATLRGCSGEISDIAIDNRNILLAAGTV----DKTIRIWNLQTL--AP--IS 554 (1915)
Q Consensus 491 LaTGs~D----g~I~IWd~--~tg~~~--~~l~gH~~~I~~Lafspdg~~LaSgs~----DgtIrVWDl~tg--~~--~~ 554 (1915)
+++|+.. +.|.+|.+ .++.+. ..+. .......|++++++++|+++.. ++.|..|.+... .+ +.
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~-~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~ 80 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVA-EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLN 80 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEE-ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeec-CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEee
Confidence 4566666 68888887 555543 2222 3445678999999999999876 568999988653 33 33
Q ss_pred EeecCCCCeEEEEeccCccCCCcEEEEEe-CCCeEEEEecccCcccccee--ccCccccccccCCCCCceEEEEECCCCc
Q psy9598 555 VLVGHQGIITGVNFCPLEVNGFNYLASTS-TDGCIGFWKYKLDIDISKTV--FHEPVMFNERIRPGNAHILCSSFSPGGL 631 (1915)
Q Consensus 555 ~l~~h~~~V~sl~fsp~~~~d~~~L~sgs-~DgtI~iWDl~~~~~~~~~~--~~~~~~~~~~~~~~~~~V~~l~fspdg~ 631 (1915)
...........|+++|+ +.+|+++. .+|+|.++++.....+.... ...........+.......++.|+|+|+
T Consensus 81 ~~~~~g~~p~~i~~~~~----g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~ 156 (345)
T PF10282_consen 81 SVPSGGSSPCHIAVDPD----GRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGR 156 (345)
T ss_dssp EEEESSSCEEEEEECTT----SSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSS
T ss_pred eeccCCCCcEEEEEecC----CCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCC
Confidence 33323445678899884 36666665 68999999998743222221 1000000000112235578999999999
Q ss_pred EEEEEeC-CCeEEEEEecCCCC-CceeEEe-ccCCCCeeEEEEcCCCCEEEEE-eCCCcEEEEEcc--CCceEEeeeccc
Q psy9598 632 FLATGSG-DHHVRVYKMDGVDS-PLGILEV-EEHSDKVDSIQWSHSHLRFVSG-SRDGTALIWYYK--CSQWRFIRLDMN 705 (1915)
Q Consensus 632 ~Lasgs~-Dg~I~IwDl~~~~~-~~~i~~l-~~h~~~V~sl~fspdg~~L~sg-s~DG~I~IWDl~--~~~~~~~~~~~~ 705 (1915)
+|++... ...|.+|+++.... ......+ ......-..++|+|++.++++. -.++.|.+|++. .+.+..... .
T Consensus 157 ~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~--~ 234 (345)
T PF10282_consen 157 FVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQT--I 234 (345)
T ss_dssp EEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEE--E
T ss_pred EEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEE--e
Confidence 8877543 45899999954331 1111222 2334567889999999977655 467889999988 443322211 1
Q ss_pred ccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECC--CCce--EEEeeCCCCCeEEEEEccCCCCEEE
Q psy9598 706 TCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAF--NGDL--VQVLKGHTNEVFVLESHPFDSRVLL 781 (1915)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~--tg~~--i~~l~gH~~~V~sl~~sp~dg~~La 781 (1915)
...+. ..........|+++|+|++|+++....+.|.+|++. +|.+ +..+.........++++| ++++|+
T Consensus 235 ~~~~~------~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~-~g~~l~ 307 (345)
T PF10282_consen 235 STLPE------GFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSP-DGRYLY 307 (345)
T ss_dssp ESCET------TSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-T-TSSEEE
T ss_pred eeccc------cccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeC-CCCEEE
Confidence 11111 011123678899999999999998878899999983 3433 334443344578999999 888888
Q ss_pred EEe-cCceEEEEECC--CCcc
Q psy9598 782 SAG-HDGLIIIWDIL--SSKQ 799 (1915)
Q Consensus 782 Sgs-~DG~I~IWdl~--s~~~ 799 (1915)
+++ .++.|.+|++. +|..
T Consensus 308 Va~~~s~~v~vf~~d~~tG~l 328 (345)
T PF10282_consen 308 VANQDSNTVSVFDIDPDTGKL 328 (345)
T ss_dssp EEETTTTEEEEEEEETTTTEE
T ss_pred EEecCCCeEEEEEEeCCCCcE
Confidence 776 56799999874 4444
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG1827|consensus | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.8e-12 Score=157.96 Aligned_cols=228 Identities=16% Similarity=0.159 Sum_probs=167.3
Q ss_pred HHHHHHHHHHHHhc---CCCccCCCCCCCCCCCCCccccccCCCCCHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhhc
Q psy9598 1373 ATCEKIITGLEEVM---GLSVAEPFLVPVDISQYPAYAYVVEYPVDLTTLRARFQNRFYRRITSAQFDVRYLAANAEKFN 1449 (1915)
Q Consensus 1373 ~~~~~i~~~~~~~~---~~~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~tI~~rl~~~~Y~~~~~~~~D~~l~~~Na~~yN 1449 (1915)
.....|++.+..++ +..+...|.+++++...|+||.+|..||.|..|++|+..+.|++++.|..||.+|+.||++||
T Consensus 55 ~~f~~il~~~~~~~d~~gk~~~d~feklp~~~~~p~yy~~i~~pisl~~ik~kv~k~~y~~~~~f~~D~~lm~ena~~~n 134 (629)
T KOG1827|consen 55 PKFKTILASLLDLKDDEGKQLFDKFEKLPSRKEFPEYYYVIQQPISLDQIKRKVKKGRYKRLSFFQLDFLLMTENARLYN 134 (629)
T ss_pred HHHHHHHHHHHhhccccCcccchhHhhccccccCCCcceeecCcccHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhc
Confidence 45677777777776 788999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCCCCccchhhhhcccccCCCChhhhhhhhhhhccccCCcchhhhhHHHhhhhhcCC
Q psy9598 1450 EPHSNIVKYARIITDLLLRIIKEPNPVDVPVVYHELLQNYETSSSEEEEEEDSKSRQRRVRPTAVTRAQREAMNQKKLKR 1529 (1915)
Q Consensus 1450 ~~~s~i~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1529 (1915)
.++|.|+++|..|...|....... .+ ...+..+.+ .-.++........+-.. ... ...
T Consensus 135 ~~ds~~~~~s~~l~~~~~~~~~~~--~d----------~e~s~~~~~-~l~~~~l~~~~~~~~~i-------~~~--~~~ 192 (629)
T KOG1827|consen 135 RPDSLIYKDSGELEKYFISLEDEK--KD----------GELSMESNE-ELKAGGLHYHELGPVEI-------DGT--KYI 192 (629)
T ss_pred Ccchhhhhhhhhhhcchhhhhccc--cc----------hhhcccccc-ccccCCCCcccCCCccc-------cCc--ccc
Confidence 999999999999999997655420 00 000000000 00000000000000000 000 000
Q ss_pred chhhHHHHHHHHHHHHc----C-CCCCCCCCCCCCCCCCCccccccCccchhhHHhhhcCCCCCCHHHHHHHHHHHHHHh
Q psy9598 1530 PFNWKNECREVLETLWV----C-PDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNS 1604 (1915)
Q Consensus 1530 ~~~~~~~~~~ll~~l~~----~-~~s~~F~~pv~~~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~Dv~lif~Na 1604 (1915)
+.. .-++..--. + -....|...++...+|+||.+++-||.+..+.+++..+.|.....|..|+.++|.|+
T Consensus 193 ~gd-----~vlv~~~~d~~~p~v~~Ier~w~~~dg~k~~~~~w~~rP~~T~H~a~r~F~k~Evfkt~~~~~~~~q~l~g~ 267 (629)
T KOG1827|consen 193 VGD-----YVLVQNPADNLKPIVAQIERLWKLPDGEKWPQGCWIYRPEETVHRADRKFYKQEVFKTSLYRDDLVQRLLGK 267 (629)
T ss_pred cCc-----eeeecCcccccCCceeeecccccCcccccccceeEeeCCccCccccccchhcccceecccccccHHHHhhcc
Confidence 000 011111111 0 115788899999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCCHHHHHHHHHHHHHHH
Q psy9598 1605 RNYNQNKRSKIYIMTTRLSEFAEE 1628 (1915)
Q Consensus 1605 ~~yN~~~~s~i~~~a~~l~~~f~~ 1628 (1915)
..|+... ..|+.++..|.+.+.-
T Consensus 268 c~v~~~~-~yi~~~p~~ls~~dv~ 290 (629)
T KOG1827|consen 268 CYVMKPT-EYISGDPENLSEEDVF 290 (629)
T ss_pred eEEeehh-HhhhcCccccccccee
Confidence 9999988 8999999888775443
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.5e-09 Score=138.32 Aligned_cols=238 Identities=13% Similarity=0.089 Sum_probs=150.4
Q ss_pred CcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCC---CeEEEEecccCccccceeccCccccccccCC
Q psy9598 540 KTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTD---GCIGFWKYKLDIDISKTVFHEPVMFNERIRP 616 (1915)
Q Consensus 540 gtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~D---gtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~ 616 (1915)
..|.+||.. |.....+..+...+.+.+|+|+ ++.|+.++.. ..|.+||+.++...... .
T Consensus 176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPD----G~~la~~s~~~~~~~I~~~dl~~g~~~~l~-------------~ 237 (427)
T PRK02889 176 YQLQISDAD-GQNAQSALSSPEPIISPAWSPD----GTKLAYVSFESKKPVVYVHDLATGRRRVVA-------------N 237 (427)
T ss_pred cEEEEECCC-CCCceEeccCCCCcccceEcCC----CCEEEEEEccCCCcEEEEEECCCCCEEEee-------------c
Confidence 467777774 4555556677888999999994 4777776643 46999999877432111 1
Q ss_pred CCCceEEEEECCCCcEEE-EEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeC-CCcEEEEEcc-
Q psy9598 617 GNAHILCSSFSPGGLFLA-TGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSR-DGTALIWYYK- 693 (1915)
Q Consensus 617 ~~~~V~~l~fspdg~~La-sgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~-DG~I~IWDl~- 693 (1915)
..+.+.+.+|+|+|+.|+ +.+.+|...||.++.... ....+..+...+....|+|+|..|+..+. +|...||.+.
T Consensus 238 ~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~--~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~ 315 (427)
T PRK02889 238 FKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGS--GLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPA 315 (427)
T ss_pred CCCCccceEECCCCCEEEEEEccCCCceEEEEECCCC--CcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEEC
Confidence 123456889999998876 467788877777643221 13344555566677899999998876554 5677777654
Q ss_pred -CCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCC--eEEEEECCCCceEEEeeCCCCCeEEE
Q psy9598 694 -CSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNF--QIKIWDAFNGDLVQVLKGHTNEVFVL 770 (1915)
Q Consensus 694 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg--~I~vwD~~tg~~i~~l~gH~~~V~sl 770 (1915)
++....+. .........+|+|+|++|+.++..++ .|.+||+.++.......+ ......
T Consensus 316 ~~g~~~~lt-----------------~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~--~~~~~p 376 (427)
T PRK02889 316 SGGAAQRVT-----------------FTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTDT--TRDESP 376 (427)
T ss_pred CCCceEEEe-----------------cCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccCC--CCccCc
Confidence 33321111 01112235789999999988775232 699999988875543322 234678
Q ss_pred EEccCCCCEEEEEecCc---eEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCC
Q psy9598 771 ESHPFDSRVLLSAGHDG---LIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPD 825 (1915)
Q Consensus 771 ~~sp~dg~~LaSgs~DG---~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpd 825 (1915)
.|+| ++++|+.++.++ .+.+.++. +.. ...+. .+.+.+...+|+|-
T Consensus 377 ~~sp-dg~~l~~~~~~~g~~~l~~~~~~-g~~--~~~l~-----~~~g~~~~p~wsp~ 425 (427)
T PRK02889 377 SFAP-NGRYILYATQQGGRSVLAAVSSD-GRI--KQRLS-----VQGGDVREPSWGPF 425 (427)
T ss_pred eECC-CCCEEEEEEecCCCEEEEEEECC-CCc--eEEee-----cCCCCCCCCccCCC
Confidence 9999 888887776544 35555553 332 22221 23456777788873
|
|
| >KOG3881|consensus | Back alignment and domain information |
|---|
Probab=99.21 E-value=5.1e-10 Score=129.16 Aligned_cols=275 Identities=11% Similarity=0.075 Sum_probs=193.1
Q ss_pred ecCCCCcEEEEEEcCCC--CEEEEEECCCcEEEEECCCCcEEEE------EeCCCCCEEEEEEeCCCCEEEEEeCCCcEE
Q psy9598 472 NLGHLSAVFCVLFDKLG--EVIVTGADDLLIKLWRARDGKLLAT------LRGCSGEISDIAIDNRNILLAAGTVDKTIR 543 (1915)
Q Consensus 472 l~gH~~~V~~vafspdg--~~LaTGs~Dg~I~IWd~~tg~~~~~------l~gH~~~I~~Lafspdg~~LaSgs~DgtIr 543 (1915)
..+-...|..++|.-++ ..|...+.+..+..+......+... ..+.+++|..++.... .|++|-.+|.+.
T Consensus 51 ~~~~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~dg--~Litc~~sG~l~ 128 (412)
T KOG3881|consen 51 GVDELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLADG--TLITCVSSGNLQ 128 (412)
T ss_pred ccchhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhcCC--EEEEEecCCcEE
Confidence 33456778888886544 4455555676777777766654433 3455677877776433 788888899999
Q ss_pred EEECCCCc----eEEEeecCCCCeEEEEeccCccCCCcEEEEEeCC--CeEEEEecccCccccceeccCccccccccCCC
Q psy9598 544 IWNLQTLA----PISVLVGHQGIITGVNFCPLEVNGFNYLASTSTD--GCIGFWKYKLDIDISKTVFHEPVMFNERIRPG 617 (1915)
Q Consensus 544 VWDl~tg~----~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~D--gtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~ 617 (1915)
+|.+..+. .+..+..+ ..+..+.-++. ....+++|+.. ..+.+||+.....+..........+.-. -
T Consensus 129 ~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~---~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~Lr---V 201 (412)
T KOG3881|consen 129 VRHDKSGDLHSSKLIKLATG-PGLYDVRQTDT---DPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLR---V 201 (412)
T ss_pred EEeccCCccccccceeeecC-CceeeeccCCC---CCceEecCchhcccceeeeecccceeeeeccCCCCccccce---e
Confidence 99987433 23333333 34556666653 34677889988 8899999988754433222111111000 1
Q ss_pred CCceEEEEECCC--CcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCC
Q psy9598 618 NAHILCSSFSPG--GLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCS 695 (1915)
Q Consensus 618 ~~~V~~l~fspd--g~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~ 695 (1915)
...++.+.|.+. ...||+++.-|.|++||..... ..+..+.-...+|+++...|.|+++++|..-|.+..||++.+
T Consensus 202 PvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qR--RPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~ 279 (412)
T KOG3881|consen 202 PVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQR--RPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGG 279 (412)
T ss_pred eeeeccceecCCCCCceEEEEecceeEEEecCcccC--cceeEeccccCcceeeeecCCCcEEEEecccchhheecccCc
Confidence 245778899988 8899999999999999996444 445666667889999999999999999999999999999988
Q ss_pred ceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCCCeEEEEEcc
Q psy9598 696 QWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHP 774 (1915)
Q Consensus 696 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp 774 (1915)
.... ....+..+.|.+|..+|.+.+|++++- |..|+|+|+.+.++++.... ...+++|.+.+
T Consensus 280 kl~g---------------~~~kg~tGsirsih~hp~~~~las~GL-DRyvRIhD~ktrkll~kvYv-Ks~lt~il~~~ 341 (412)
T KOG3881|consen 280 KLLG---------------CGLKGITGSIRSIHCHPTHPVLASCGL-DRYVRIHDIKTRKLLHKVYV-KSRLTFILLRD 341 (412)
T ss_pred eeec---------------cccCCccCCcceEEEcCCCceEEeecc-ceeEEEeecccchhhhhhhh-hccccEEEecC
Confidence 7332 123456788999999999999999998 99999999999776654431 22345555543
|
|
| >KOG2041|consensus | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.1e-09 Score=128.76 Aligned_cols=284 Identities=13% Similarity=0.149 Sum_probs=199.5
Q ss_pred CCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCc---------------EEEEEeCCCCCEEEEEEeCCCCEEEEEeCCC
Q psy9598 476 LSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGK---------------LLATLRGCSGEISDIAIDNRNILLAAGTVDK 540 (1915)
Q Consensus 476 ~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~---------------~~~~l~gH~~~I~~Lafspdg~~LaSgs~Dg 540 (1915)
.....|++|+....|||+||.||.++|..+.+.. .-+++.||.+.|.-+.|+.+.+.|-|...+|
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G 93 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG 93 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCc
Confidence 3567899999999999999999999999876431 2246789999999999999999999999999
Q ss_pred cEEEEECCCCceEEEee--cCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCC
Q psy9598 541 TIRIWNLQTLAPISVLV--GHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGN 618 (1915)
Q Consensus 541 tIrVWDl~tg~~~~~l~--~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~ 618 (1915)
.|.||-+-.|.-...+. ...+.|.+++|.. +|..+.....||.|.+=.+........- +. .
T Consensus 94 lIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~----dG~kIcIvYeDGavIVGsvdGNRIwgKe-Lk------------g 156 (1189)
T KOG2041|consen 94 LIIVWMLYKGSWCEEMINNRNKSVVVSMSWNL----DGTKICIVYEDGAVIVGSVDGNRIWGKE-LK------------G 156 (1189)
T ss_pred eEEEEeeecccHHHHHhhCcCccEEEEEEEcC----CCcEEEEEEccCCEEEEeeccceecchh-cc------------h
Confidence 99999987665332221 2345788999987 5588888888988877665544321111 00 0
Q ss_pred CceEEEEECCCCcEEEEEeCCCeEEEEEecCCCC----CceeE----EeccCCCCeeEEEEc--------CCCCEEEEEe
Q psy9598 619 AHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDS----PLGIL----EVEEHSDKVDSIQWS--------HSHLRFVSGS 682 (1915)
Q Consensus 619 ~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~----~~~i~----~l~~h~~~V~sl~fs--------pdg~~L~sgs 682 (1915)
.....+.|++|...++.+-.+|.+++||..+.-. ..+.. .+......|..+.|. |+...|+++.
T Consensus 157 ~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy 236 (1189)
T KOG2041|consen 157 QLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCY 236 (1189)
T ss_pred heccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEE
Confidence 2234688999999999999999999999753211 11111 112222346666664 4667899999
Q ss_pred CCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEec-------C-CeEEEEECCCC
Q psy9598 683 RDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINF-------N-FQIKIWDAFNG 754 (1915)
Q Consensus 683 ~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~-------D-g~I~vwD~~tg 754 (1915)
..|.+.|-.-.+.. .+ ........+..+.|+++|..|++++.. | +.|.+|. .-|
T Consensus 237 ~nGr~QiMR~eND~---------------~P--vv~dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G 298 (1189)
T KOG2041|consen 237 ANGRMQIMRSENDP---------------EP--VVVDTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYG 298 (1189)
T ss_pred cCceehhhhhcCCC---------------CC--eEEecccEeecceecCCCcEEEEccCcccccCccccceEEEec-cch
Confidence 99988875322211 00 111233678889999999999998861 1 2455554 358
Q ss_pred ceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCC
Q psy9598 755 DLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILS 796 (1915)
Q Consensus 755 ~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s 796 (1915)
..+.+|+.....|++++|-. .|-.++. ..|+.|++=+++-
T Consensus 299 ~i~gtlkvpg~~It~lsWEg-~gLriA~-AvdsfiyfanIRP 338 (1189)
T KOG2041|consen 299 HIVGTLKVPGSCITGLSWEG-TGLRIAI-AVDSFIYFANIRP 338 (1189)
T ss_pred hheEEEecCCceeeeeEEcC-CceEEEE-EecceEEEEeecc
Confidence 88999998899999999986 4444444 4588888877754
|
|
| >KOG1409|consensus | Back alignment and domain information |
|---|
Probab=99.20 E-value=6.5e-10 Score=126.05 Aligned_cols=328 Identities=14% Similarity=0.181 Sum_probs=204.2
Q ss_pred ccccccCCCeEEEecccCCceeeeEE-ecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCC----CcEEEEEeCCCCC
Q psy9598 446 REYSGPLSRSLMISSHKYSNLRQHYV-NLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARD----GKLLATLRGCSGE 520 (1915)
Q Consensus 446 r~~tg~~d~~~~i~~~~~~~~~~~~~-l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~t----g~~~~~l~gH~~~ 520 (1915)
..++.+.++++++|-..... +.... ...-..+++++.+.+....|++|-..|+|.-+.+.. ...++....|.+.
T Consensus 38 gv~~~s~drtvrv~lkrds~-q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~ 116 (404)
T KOG1409|consen 38 GVISVSEDRTVRVWLKRDSG-QYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQAR 116 (404)
T ss_pred CeEEccccceeeeEEecccc-ccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcc
Confidence 34567788888888532221 11111 122357899999999999999999999999997643 3455666789999
Q ss_pred EEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCcccc
Q psy9598 521 ISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDIS 600 (1915)
Q Consensus 521 I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~ 600 (1915)
|..+-|+-...++++.+.|..+.--..+.+.-+..+.- ....+++.| +-.+.+.|...|.|.+..+...
T Consensus 117 v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~-~~~~t~~~~------d~~~~fvGd~~gqvt~lr~~~~---- 185 (404)
T KOG1409|consen 117 VSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNF-ETPASALQF------DALYAFVGDHSGQITMLKLEQN---- 185 (404)
T ss_pred eeeEEecCCceeEEEeccccceEEEeeccCCcccceEe-eccCCCCce------eeEEEEecccccceEEEEEeec----
Confidence 99999999999999999998776555555544332211 011111111 1123444555555554433322
Q ss_pred ceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEE
Q psy9598 601 KTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVS 680 (1915)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~s 680 (1915)
.......+.+|.+.++|++|.+....|++|..|..|.+||+.+ .......+.+|...|..++..+--..|++
T Consensus 186 ------~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg--~~g~~~el~gh~~kV~~l~~~~~t~~l~S 257 (404)
T KOG1409|consen 186 ------GCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGG--RKGTAYELQGHNDKVQALSYAQHTRQLIS 257 (404)
T ss_pred ------CCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccC--Ccceeeeeccchhhhhhhhhhhhheeeee
Confidence 2233445668889999999999999999999999999999943 23445678999999999998888889999
Q ss_pred EeCCCcEEEEEccCCceEEeeecccccC-CCC-c-----------ccccc-----ccccccEEEEEECCCCCEEEEEEec
Q psy9598 681 GSRDGTALIWYYKCSQWRFIRLDMNTCL-PHT-K-----------ETSDE-----TNKKIKVTMVAWDASDRWVITAINF 742 (1915)
Q Consensus 681 gs~DG~I~IWDl~~~~~~~~~~~~~~~~-~~~-~-----------~~~~~-----~~~~~~V~~va~spdg~~L~t~s~~ 742 (1915)
++.||.|.+|++..............+. ... . ..... ......|...+-+....+...+.
T Consensus 258 ~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~~~p~mg~-- 335 (404)
T KOG1409|consen 258 CGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRSSYPTMGF-- 335 (404)
T ss_pred ccCCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCcccccCccccccccc--
Confidence 9999999999987543211100000000 000 0 00000 00111222222222222222222
Q ss_pred CCeEEEEECC-------CCceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCC
Q psy9598 743 NFQIKIWDAF-------NGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILS 796 (1915)
Q Consensus 743 Dg~I~vwD~~-------tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s 796 (1915)
.-.+++-|.- +..++.++..-...|+.+.+.- +-.+|+|+|.|..|+|||+..
T Consensus 336 e~~vR~~~~c~~~i~~~~~t~LA~phei~tgItamhlqe-tlglLvTsG~~Rvi~iwd~~~ 395 (404)
T KOG1409|consen 336 EFSVRVCDSCYPTIKDEERTPLAIPHEIKTGITAMHLQE-TLGLLVTSGTDRVIKIWDVRS 395 (404)
T ss_pred eeEEEEecccchhhhcCCCCccccccccccceeEEEhhh-hccceeecCCceEEEEEechh
Confidence 3345554432 1123444432233588888876 677899999999999999964
|
|
| >KOG1827|consensus | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.1e-11 Score=151.52 Aligned_cols=149 Identities=21% Similarity=0.206 Sum_probs=124.0
Q ss_pred HHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHHHhCCCCCCccchhhhhcccccCCCChhhhhhhhhhhccccCCcc
Q psy9598 1434 AQFDVRYLAANAEKFNEPHSNIVKYARIITDLLLRIIKEPNPVDVPVVYHELLQNYETSSSEEEEEEDSKSRQRRVRPTA 1513 (1915)
Q Consensus 1434 ~~~D~~l~~~Na~~yN~~~s~i~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1513 (1915)
+..|+.||++||..||.|.+.++++|+-+.+...+....+.. +
T Consensus 2 ~~~df~l~~e~~~~~~~p~s~p~k~~~~~~~~~~~~k~~~~~---------------~---------------------- 44 (629)
T KOG1827|consen 2 VVADFPLMTENACSDNEPDSLPGKDAKNLQKTPLHDKTLMGR---------------D---------------------- 44 (629)
T ss_pred chhhhhHHhhccccccCCccccccCcchhhhchhhhhcccCC---------------C----------------------
Confidence 457999999999999999999999999988877544411000 0
Q ss_pred hhhhhHHHhhhhhcCCchhhHHHHHHHHHHHHcCCC------CCCCCCCCCCCCCCCccccccCccchhhHHhhhcCCCC
Q psy9598 1514 VTRAQREAMNQKKLKRPFNWKNECREVLETLWVCPD------SEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNY 1587 (1915)
Q Consensus 1514 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~------s~~F~~pv~~~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y 1587 (1915)
......+....+...+|..+..+.+ ...|.+++++++.|+||.+|.+||.|..|++|+..++|
T Consensus 45 -----------d~p~i~~~~~~~f~~il~~~~~~~d~~gk~~~d~feklp~~~~~p~yy~~i~~pisl~~ik~kv~k~~y 113 (629)
T KOG1827|consen 45 -----------DSPVIDPPLIPKFKTILASLLDLKDDEGKQLFDKFEKLPSRKEFPEYYYVIQQPISLDQIKRKVKKGRY 113 (629)
T ss_pred -----------CccccChHHHHHHHHHHHHHHhhccccCcccchhHhhccccccCCCcceeecCcccHHHHHHHHHhccc
Confidence 0012234455667777777776544 67999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHH
Q psy9598 1588 ESPIDFVKDVKRVFHNSRNYNQNKRSKIYIMTTRLSEFAEEHLR 1631 (1915)
Q Consensus 1588 ~s~~ef~~Dv~lif~Na~~yN~~~~s~i~~~a~~l~~~f~~~~~ 1631 (1915)
.+.+.|..|+.||+.||+.||..+ |.+|++|..|+..|..+..
T Consensus 114 ~~~~~f~~D~~lm~ena~~~n~~d-s~~~~~s~~l~~~~~~~~~ 156 (629)
T KOG1827|consen 114 KRLSFFQLDFLLMTENARLYNRPD-SLIYKDSGELEKYFISLED 156 (629)
T ss_pred ccHHHHHHHHHHHHHHHHHhcCcc-hhhhhhhhhhhcchhhhhc
Confidence 999999999999999999999988 9999999999999987654
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=6e-09 Score=133.47 Aligned_cols=234 Identities=15% Similarity=0.118 Sum_probs=152.0
Q ss_pred CcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeC---CCeEEEEecccCccccceeccCccccccccCC
Q psy9598 540 KTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTST---DGCIGFWKYKLDIDISKTVFHEPVMFNERIRP 616 (1915)
Q Consensus 540 gtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~---DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~ 616 (1915)
..|.+||... .....+..|...+.+.+|+|+ ++.|+.++. +..|.+||+.++.... + ..
T Consensus 182 ~~l~~~d~dg-~~~~~lt~~~~~v~~p~wSpD----G~~lay~s~~~g~~~i~~~dl~~g~~~~-l------------~~ 243 (435)
T PRK05137 182 KRLAIMDQDG-ANVRYLTDGSSLVLTPRFSPN----RQEITYMSYANGRPRVYLLDLETGQREL-V------------GN 243 (435)
T ss_pred eEEEEECCCC-CCcEEEecCCCCeEeeEECCC----CCEEEEEEecCCCCEEEEEECCCCcEEE-e------------ec
Confidence 4788999854 445566678889999999994 477777653 4689999998774311 1 11
Q ss_pred CCCceEEEEECCCCcEEE-EEeCCCe--EEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeC-CC--cEEEE
Q psy9598 617 GNAHILCSSFSPGGLFLA-TGSGDHH--VRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSR-DG--TALIW 690 (1915)
Q Consensus 617 ~~~~V~~l~fspdg~~La-sgs~Dg~--I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~-DG--~I~IW 690 (1915)
+.+.+.+.+|+|+|+.|+ +.+.+|. |.+||+.+. ....+..+.......+|+|+|..|+.++. +| .|.+|
T Consensus 244 ~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~----~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~ 319 (435)
T PRK05137 244 FPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSG----TTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVM 319 (435)
T ss_pred CCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCC----ceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEE
Confidence 224567889999998775 4555555 666677432 23345556666778999999998887663 34 57777
Q ss_pred EccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecC--CeEEEEECCCCceEEEeeCCCCCeE
Q psy9598 691 YYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFN--FQIKIWDAFNGDLVQVLKGHTNEVF 768 (1915)
Q Consensus 691 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~D--g~I~vwD~~tg~~i~~l~gH~~~V~ 768 (1915)
|+.++....+. .....+....|+|+|++|+...... ..|.+||+.++.. ..+. +...+.
T Consensus 320 d~~g~~~~~lt-----------------~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt-~~~~~~ 380 (435)
T PRK05137 320 NADGSNPRRIS-----------------FGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILT-SGFLVE 380 (435)
T ss_pred ECCCCCeEEee-----------------cCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-Eecc-CCCCCC
Confidence 77665433211 0123345678999999998876422 3688899865543 3333 223467
Q ss_pred EEEEccCCCCEEEEEecC------ceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcC
Q psy9598 769 VLESHPFDSRVLLSAGHD------GLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSP 824 (1915)
Q Consensus 769 sl~~sp~dg~~LaSgs~D------G~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSp 824 (1915)
.+.|+| ++++|+..+.+ ..|.++++..+.. ..+. ..+.+...+|+|
T Consensus 381 ~p~~sp-DG~~i~~~~~~~~~~~~~~L~~~dl~g~~~---~~l~------~~~~~~~p~Wsp 432 (435)
T PRK05137 381 GPTWAP-NGRVIMFFRQTPGSGGAPKLYTVDLTGRNE---REVP------TPGDASDPAWSP 432 (435)
T ss_pred CCeECC-CCCEEEEEEccCCCCCcceEEEEECCCCce---EEcc------CCCCccCcccCC
Confidence 889999 88877765543 2577888866543 1221 123456677876
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.4e-08 Score=120.91 Aligned_cols=301 Identities=16% Similarity=0.196 Sum_probs=205.1
Q ss_pred CcEEEEEEcCCCCEEEEEECCC---------------cEEEEECCCCcEEEEEeCCCCC--EE-EEEEeCCCCEEEEEeC
Q psy9598 477 SAVFCVLFDKLGEVIVTGADDL---------------LIKLWRARDGKLLATLRGCSGE--IS-DIAIDNRNILLAAGTV 538 (1915)
Q Consensus 477 ~~V~~vafspdg~~LaTGs~Dg---------------~I~IWd~~tg~~~~~l~gH~~~--I~-~Lafspdg~~LaSgs~ 538 (1915)
..|.-+.|||.+.||.|=+..+ .+.|||+.+|.++..+.+...+ .. -+.|+-+..++|--.
T Consensus 72 ~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv- 150 (561)
T COG5354 72 PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVV- 150 (561)
T ss_pred CCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhc-
Confidence 6799999999999999976543 4999999999999999877666 55 678998887776553
Q ss_pred CCcEEEEECCCCce----EEEeecCCCCeEEEEeccCccCCCcEEEE-----EeCCCeEEEEecccCccccceeccCccc
Q psy9598 539 DKTIRIWNLQTLAP----ISVLVGHQGIITGVNFCPLEVNGFNYLAS-----TSTDGCIGFWKYKLDIDISKTVFHEPVM 609 (1915)
Q Consensus 539 DgtIrVWDl~tg~~----~~~l~~h~~~V~sl~fsp~~~~d~~~L~s-----gs~DgtI~iWDl~~~~~~~~~~~~~~~~ 609 (1915)
...+.|+++ ++.. .+.+. ...|....|+|.+ ++..|+. ++..+++++|.+..+..+.+..+-.
T Consensus 151 ~~sl~i~e~-t~n~~~~p~~~lr--~~gi~dFsisP~~--n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk--- 222 (561)
T COG5354 151 GSSLYIHEI-TDNIEEHPFKNLR--PVGILDFSISPEG--NHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFK--- 222 (561)
T ss_pred cCeEEEEec-CCccccCchhhcc--ccceeeEEecCCC--CCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEe---
Confidence 457999997 3322 22222 3567888999964 3344443 4678899999988665444433321
Q ss_pred cccccCCCCCceEEEEECCCCcEEEEEe-----------CCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEE
Q psy9598 610 FNERIRPGNAHILCSSFSPGGLFLATGS-----------GDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRF 678 (1915)
Q Consensus 610 ~~~~~~~~~~~V~~l~fspdg~~Lasgs-----------~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L 678 (1915)
..-..+.|.+.|.+|++-- ....+.|+++.... +.......++|..++|.|.+..|
T Consensus 223 ---------~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~----i~V~~~~~~pVhdf~W~p~S~~F 289 (561)
T COG5354 223 ---------VSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERS----IPVEKDLKDPVHDFTWEPLSSRF 289 (561)
T ss_pred ---------ecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccc----cceeccccccceeeeecccCCce
Confidence 1223466777776554321 13467888884222 12222568899999999999877
Q ss_pred EEEe--CCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEe--cCCeEEEEECCCC
Q psy9598 679 VSGS--RDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAIN--FNFQIKIWDAFNG 754 (1915)
Q Consensus 679 ~sgs--~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~--~Dg~I~vwD~~tg 754 (1915)
++.+ .+..+.++|++..- +... ....-+.+.|+|.++++++++- .-|.|-+||....
T Consensus 290 ~vi~g~~pa~~s~~~lr~Nl-~~~~------------------Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~r 350 (561)
T COG5354 290 AVISGYMPASVSVFDLRGNL-RFYF------------------PEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGR 350 (561)
T ss_pred eEEecccccceeecccccce-EEec------------------CCcccccccccCcccEEEEecCCccccceEEeccCCc
Confidence 6554 78889999988762 2211 1223345789999999999764 2467999998654
Q ss_pred c-eEEEeeCCCCCeEEEEEccCCCCEEEEEe------cCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCC
Q psy9598 755 D-LVQVLKGHTNEVFVLESHPFDSRVLLSAG------HDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGT 827 (1915)
Q Consensus 755 ~-~i~~l~gH~~~V~sl~~sp~dg~~LaSgs------~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~ 827 (1915)
- ++..+.+.. ..-+.|+| ++.++.+.. .|..|.|||+..... ...+.+.|.|.|+
T Consensus 351 f~~~~~~~~~n--~s~~~wsp-d~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~---------------fel~~~~W~p~~~ 412 (561)
T COG5354 351 FKVAGAFNGLN--TSYCDWSP-DGQFYDTDTTSEKLRVDNSIKLWDVYGAKV---------------FELTNITWDPSGQ 412 (561)
T ss_pred eEEEEEeecCC--ceEeeccC-CceEEEecCCCcccccCcceEEEEecCchh---------------hhhhhccccCCcc
Confidence 3 343665544 35567999 898887764 378899999975443 2456688999888
Q ss_pred EEEEEeCCC
Q psy9598 828 TCALTDSYG 836 (1915)
Q Consensus 828 ~Lasg~~dG 836 (1915)
+..+.+..+
T Consensus 413 ~~ttsSs~~ 421 (561)
T COG5354 413 YVTTSSSCP 421 (561)
T ss_pred cceeeccCC
Confidence 776666543
|
|
| >cd05494 Bromodomain_1 Bromodomain; uncharacterized subfamily | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.7e-11 Score=123.89 Aligned_cols=77 Identities=19% Similarity=0.160 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCCCCC--CCCCCccccCCCcCCHHHHHHHhcCC-------CCCCHHHHHHHHHHHHHH
Q psy9598 118 WKNECREVLETLWVCPDSEPFRKPVDK--LDHPDYDKIVIAPMDLGTIREELRGD-------NYESPIDFVKDVKRVFHN 188 (1915)
Q Consensus 118 ~~~~~~~il~~l~~~~~~~~F~~pvd~--~~~pdY~~iIk~Pmdl~ti~~kl~~~-------~Y~~~~~f~~D~~Lif~N 188 (1915)
....|..+|..+++++.+|||..|||. .++||||+|||+||||+||++||.++ .|..-..+.+++..++.|
T Consensus 4 ~~~~~l~~l~~~~~~~~~~pF~~PVd~~~~~~pdY~~iIK~PMDL~ti~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (114)
T cd05494 4 ALERVLRELKRHRRNEDAWPFLEPVNPPRRGAPDYRDVIKRPMSFGTKVNNIVETGARDLEDLQIVQEDPADKQIDDEGR 83 (114)
T ss_pred HHHHHHHHHHHhhhCCCCCCcCCCCCchhcCCCChhhhcCCCCChHHHHHHHHccccccccccccccccccccccccccc
Confidence 345677778888888899999999997 99999999999999999999999986 455556677888888888
Q ss_pred HhhhcC
Q psy9598 189 SRNYNQ 194 (1915)
Q Consensus 189 ~~~yN~ 194 (1915)
|..+|.
T Consensus 84 ~~~~~~ 89 (114)
T cd05494 84 RSPSNI 89 (114)
T ss_pred cCcccc
Confidence 888886
|
Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine. |
| >KOG1912|consensus | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.6e-08 Score=120.56 Aligned_cols=338 Identities=12% Similarity=0.033 Sum_probs=210.0
Q ss_pred hhhcccCccccccCCCeEEEecccCCceeeeEEecCCCCcEEEEEEcCC------------CCEEEEEECCCcEEEEECC
Q psy9598 439 TVNVLRSREYSGPLSRSLMISSHKYSNLRQHYVNLGHLSAVFCVLFDKL------------GEVIVTGADDLLIKLWRAR 506 (1915)
Q Consensus 439 ~v~~l~~r~~tg~~d~~~~i~~~~~~~~~~~~~l~gH~~~V~~vafspd------------g~~LaTGs~Dg~I~IWd~~ 506 (1915)
.+.+--++.+.-+.+..+.+- +...++.+..+.-|...|+.|.|.|- .-+||++...|.|.|||..
T Consensus 20 A~Dw~~~GLiAygshslV~VV--Ds~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~ 97 (1062)
T KOG1912|consen 20 AADWSPSGLIAYGSHSLVSVV--DSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFV 97 (1062)
T ss_pred ccccCccceEEEecCceEEEE--ehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEeh
Confidence 333444444443334444443 33456667788899999999999862 2357778888999999999
Q ss_pred CCcEEEEEeCCCCCEEEEEEeC---CC-CEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEE
Q psy9598 507 DGKLLATLRGCSGEISDIAIDN---RN-ILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLAST 582 (1915)
Q Consensus 507 tg~~~~~l~gH~~~I~~Lafsp---dg-~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sg 582 (1915)
.+..+..+..|..+|.+++|-+ +. .+|++-....+|.+|+..+|..+...........|+.+.|.. .+.+..-
T Consensus 98 ~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd---~rh~~~l 174 (1062)
T KOG1912|consen 98 LASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFD---SRHFCVL 174 (1062)
T ss_pred hhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCC---cceEEEE
Confidence 9999999999999999999966 23 466666777899999999999888877666677788888864 3444444
Q ss_pred eCCCeEEEEecccCccc----cceeccCc-----------------------ccccc-----ccCCC-------------
Q psy9598 583 STDGCIGFWKYKLDIDI----SKTVFHEP-----------------------VMFNE-----RIRPG------------- 617 (1915)
Q Consensus 583 s~DgtI~iWDl~~~~~~----~~~~~~~~-----------------------~~~~~-----~~~~~------------- 617 (1915)
+..|.|.+.+.-..... ..+....+ ..+.. .+.+|
T Consensus 175 ~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prel 254 (1062)
T KOG1912|consen 175 GSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPREL 254 (1062)
T ss_pred ccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccce
Confidence 44555544433111000 00000000 00000 00111
Q ss_pred -----------------CCceEEEEECCCC--cEEEEEeCCCeEEEEEecCCC----------------CCceeE-----
Q psy9598 618 -----------------NAHILCSSFSPGG--LFLATGSGDHHVRVYKMDGVD----------------SPLGIL----- 657 (1915)
Q Consensus 618 -----------------~~~V~~l~fspdg--~~Lasgs~Dg~I~IwDl~~~~----------------~~~~i~----- 657 (1915)
.+.+.-+.+-|++ ..|+++..||.+.||-..... ....+.
T Consensus 255 lv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~ 334 (1062)
T KOG1912|consen 255 LVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEF 334 (1062)
T ss_pred EEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhc
Confidence 1122233444543 468888899998888643100 000000
Q ss_pred -------------------------------------------------------------------EeccCCCCeeEEE
Q psy9598 658 -------------------------------------------------------------------EVEEHSDKVDSIQ 670 (1915)
Q Consensus 658 -------------------------------------------------------------------~l~~h~~~V~sl~ 670 (1915)
...+|...+.++.
T Consensus 335 rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~ 414 (1062)
T KOG1912|consen 335 RPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVR 414 (1062)
T ss_pred ccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccccccCceeehhhccccchhhcCCCCCCceeee
Confidence 0012333333332
Q ss_pred EcC-----------CCC-------EEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCC
Q psy9598 671 WSH-----------SHL-------RFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDAS 732 (1915)
Q Consensus 671 fsp-----------dg~-------~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spd 732 (1915)
..| .|+ +++.|...|+|.++|+.++... .....|...|.++.|...
T Consensus 415 ~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~----------------~~fsvht~~VkgleW~g~ 478 (1062)
T KOG1912|consen 415 MRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVA----------------ASFSVHTSLVKGLEWLGN 478 (1062)
T ss_pred cccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecchhhh----------------hhhcccccceeeeeeccc
Confidence 221 121 5788999999999998877621 234457788888888877
Q ss_pred CCEEEEEEec--------CCeEEEEECCCCceEE--Eee-CCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCc
Q psy9598 733 DRWVITAINF--------NFQIKIWDAFNGDLVQ--VLK-GHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSK 798 (1915)
Q Consensus 733 g~~L~t~s~~--------Dg~I~vwD~~tg~~i~--~l~-gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~ 798 (1915)
..++-.+.+. -+.+.|-|+++|--.. .++ ....+|..|..+. .++||+..-.|.-+-|||+.+..
T Consensus 479 sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~despI~~irvS~-~~~yLai~Fr~~plEiwd~kt~~ 554 (1062)
T KOG1912|consen 479 SSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKPDESPIRAIRVSS-SGRYLAILFRREPLEIWDLKTLR 554 (1062)
T ss_pred eeEEEeeeccccccccceeeeEEEEEcccccccccccCCCCCcCcceeeeecc-cCceEEEEecccchHHHhhccch
Confidence 7666544431 2347788888885432 223 3456899999998 89999999999999999996644
|
|
| >KOG2315|consensus | Back alignment and domain information |
|---|
Probab=99.14 E-value=9.2e-09 Score=123.92 Aligned_cols=311 Identities=16% Similarity=0.183 Sum_probs=196.8
Q ss_pred cCccccccCCCeEEEecccCCceeeeEEecCCCCcEEEEEEcCCCCEEEEE-----ECC-----CcEEEEECCCCcEEEE
Q psy9598 444 RSREYSGPLSRSLMISSHKYSNLRQHYVNLGHLSAVFCVLFDKLGEVIVTG-----ADD-----LLIKLWRARDGKLLAT 513 (1915)
Q Consensus 444 ~~r~~tg~~d~~~~i~~~~~~~~~~~~~l~gH~~~V~~vafspdg~~LaTG-----s~D-----g~I~IWd~~tg~~~~~ 513 (1915)
.|+...-+....+.|....... ..++.+. ..++++.|||-|.+|.|= ..+ -.+++|++.++.....
T Consensus 45 ~G~lfA~~~~~~v~i~~~~~~~-~~lt~~~---~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~ 120 (566)
T KOG2315|consen 45 NGRLFAYSDNQVVKVFEIATLK-VVLCVEL---KKTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQ 120 (566)
T ss_pred CCcEEEEEcCCeEEEEEccCCc-EEEEecc---ceeeeeeecccccccccccccccccCCCCCCCceeeeeeccceehhh
Confidence 3555554445555554433332 2222322 278999999999999862 122 3577999999766655
Q ss_pred EeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEE-----EeCCCeE
Q psy9598 514 LRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLAS-----TSTDGCI 588 (1915)
Q Consensus 514 l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~s-----gs~DgtI 588 (1915)
+......-.++.|+.|..+.|- -..+.|.+|++.+.+.+. -.-|...|+.+.++|.. ....+++ +|.-+.|
T Consensus 121 ~q~k~Q~~W~~qfs~dEsl~ar-lv~nev~f~~~~~f~~~~-~kl~~~~i~~f~lSpgp--~~~~vAvyvPe~kGaPa~v 196 (566)
T KOG2315|consen 121 IQKKMQNGWVPQFSIDESLAAR-LVSNEVQFYDLGSFKTIQ-HKLSVSGITMLSLSPGP--EPPFVAVYVPEKKGAPASV 196 (566)
T ss_pred eehhhhcCcccccccchhhhhh-hhcceEEEEecCCcccee-eeeeccceeeEEecCCC--CCceEEEEccCCCCCCcEE
Confidence 5432222268999998764432 235679999998744322 22367788999999852 2233333 4556789
Q ss_pred EEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcE-EEEE--eC---------CCeEEEEEecCCCCCcee
Q psy9598 589 GFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLF-LATG--SG---------DHHVRVYKMDGVDSPLGI 656 (1915)
Q Consensus 589 ~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~-Lasg--s~---------Dg~I~IwDl~~~~~~~~i 656 (1915)
+||.+..... +.+......+. ..-..+.|++-|.- |+.+ .. ..+++++++.+ ..+.
T Consensus 197 ri~~~~~~~~------~~~~a~ksFFk---adkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g---~s~~ 264 (566)
T KOG2315|consen 197 RIYKYPEEGQ------HQPVANKSFFK---ADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQG---ESVS 264 (566)
T ss_pred EEeccccccc------cchhhhccccc---cceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecC---ceEE
Confidence 9998762211 11111111111 22345677776653 2222 22 23677777741 1122
Q ss_pred EEeccCCCCeeEEEEcCCCCEEEE--EeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCC
Q psy9598 657 LEVEEHSDKVDSIQWSHSHLRFVS--GSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDR 734 (1915)
Q Consensus 657 ~~l~~h~~~V~sl~fspdg~~L~s--gs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~ 734 (1915)
.. -...++|.++.|+++|+-|++ |-.-..+.|||++..-.. ....++-+++-|+|.|+
T Consensus 265 V~-L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v~-------------------df~egpRN~~~fnp~g~ 324 (566)
T KOG2315|consen 265 VP-LLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPVF-------------------DFPEGPRNTAFFNPHGN 324 (566)
T ss_pred Ee-cCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEeE-------------------eCCCCCccceEECCCCC
Confidence 22 234789999999999987655 456678999988754311 11334567799999999
Q ss_pred EEEEEEe--cCCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEEec------CceEEEEECCCC
Q psy9598 735 WVITAIN--FNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGH------DGLIIIWDILSS 797 (1915)
Q Consensus 735 ~L~t~s~--~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~------DG~I~IWdl~s~ 797 (1915)
+|+.+|- .-|.|-|||+.+.+++..+.... .+-+.|+| ||.+|+|+.. |..++||+....
T Consensus 325 ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~--tt~~eW~P-dGe~flTATTaPRlrvdNg~KiwhytG~ 392 (566)
T KOG2315|consen 325 IILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN--TTVFEWSP-DGEYFLTATTAPRLRVDNGIKIWHYTGS 392 (566)
T ss_pred EEEEeecCCCCCceEEEeccchhhccccccCC--ceEEEEcC-CCcEEEEEeccccEEecCCeEEEEecCc
Confidence 9998874 35789999999999999887655 45678999 9999999875 688999998643
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.2e-09 Score=119.75 Aligned_cols=152 Identities=18% Similarity=0.339 Sum_probs=109.9
Q ss_pred EEEEECCCCcEEEEEeC----------CCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEE--eCCCcEEE
Q psy9598 622 LCSSFSPGGLFLATGSG----------DHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSG--SRDGTALI 689 (1915)
Q Consensus 622 ~~l~fspdg~~Lasgs~----------Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sg--s~DG~I~I 689 (1915)
..+.|++.|.+|++-.. -|...||.++....+.....+. ..++|.+++|+|+|..|++. ..++.|.+
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~-~~~~I~~~~WsP~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELK-KEGPIHDVAWSPNGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeecc-CCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence 46788888877665333 2446677774444444443333 34569999999999987654 46789999
Q ss_pred EEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEe--cCCeEEEEECCCCceEEEeeCCCCCe
Q psy9598 690 WYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAIN--FNFQIKIWDAFNGDLVQVLKGHTNEV 767 (1915)
Q Consensus 690 WDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~--~Dg~I~vwD~~tg~~i~~l~gH~~~V 767 (1915)
||++... +.. -....++.|.|+|+|++|++++. ..|.|.+||+.+.+.+..+. |. .+
T Consensus 88 yd~~~~~-i~~------------------~~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~~-~~ 146 (194)
T PF08662_consen 88 YDVKGKK-IFS------------------FGTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-HS-DA 146 (194)
T ss_pred EcCcccE-eEe------------------ecCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-cC-cE
Confidence 9996222 110 12345678999999999999874 24679999999988887765 33 47
Q ss_pred EEEEEccCCCCEEEEEec------CceEEEEECCC
Q psy9598 768 FVLESHPFDSRVLLSAGH------DGLIIIWDILS 796 (1915)
Q Consensus 768 ~sl~~sp~dg~~LaSgs~------DG~I~IWdl~s 796 (1915)
+.++|+| +|++|+|++. |..++||++..
T Consensus 147 t~~~WsP-dGr~~~ta~t~~r~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 147 TDVEWSP-DGRYLATATTSPRLRVDNGFKIWSFQG 180 (194)
T ss_pred EEEEEcC-CCCEEEEEEeccceeccccEEEEEecC
Confidence 8999999 9999999874 78899999853
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.9e-09 Score=121.58 Aligned_cols=114 Identities=23% Similarity=0.400 Sum_probs=90.0
Q ss_pred ccccEEEEEECCCCCEEEEEE-ecCCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEEec---CceEEEEECC
Q psy9598 720 KKIKVTMVAWDASDRWVITAI-NFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGH---DGLIIIWDIL 795 (1915)
Q Consensus 720 ~~~~V~~va~spdg~~L~t~s-~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~---DG~I~IWdl~ 795 (1915)
..+.|..++|+|+|..+++.. ..++.|.+||+. ++.+..+. ...++.|.|+| +|++|++||. .|.|.+||+.
T Consensus 58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP-~G~~l~~~g~~n~~G~l~~wd~~ 133 (194)
T PF08662_consen 58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSP-DGRFLVLAGFGNLNGDLEFWDVR 133 (194)
T ss_pred CCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECC-CCCEEEEEEccCCCcEEEEEECC
Confidence 345699999999999876553 336799999996 67777664 45688999999 9999999875 4679999999
Q ss_pred CCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEEeC------CCeEEEEeCCCC
Q psy9598 796 SSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDS------YGHLLVYGLGGF 846 (1915)
Q Consensus 796 s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~------dG~I~Iwdl~s~ 846 (1915)
+.+. +..+. +..+..++|||||++|++++. |..+.||++.+.
T Consensus 134 ~~~~--i~~~~-------~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~ 181 (194)
T PF08662_consen 134 KKKK--ISTFE-------HSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGR 181 (194)
T ss_pred CCEE--eeccc-------cCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCe
Confidence 7666 44332 345789999999999999874 678999998644
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.7e-08 Score=124.00 Aligned_cols=300 Identities=10% Similarity=0.015 Sum_probs=183.6
Q ss_pred CCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEE
Q psy9598 488 GEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVN 567 (1915)
Q Consensus 488 g~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~ 567 (1915)
+..|++++.+|.|..+|..+|+.+..+..........+. ++..++.++.++.|..||..+|+.+...... +.+.
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~~~~--- 138 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRAKLS-SEVL--- 138 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeeeeccC-ceee---
Confidence 678899999999999999999998877644332222332 4667888889999999999999988765432 2222
Q ss_pred eccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEe
Q psy9598 568 FCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKM 647 (1915)
Q Consensus 568 fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl 647 (1915)
-+|.. .+..++.++.+|.|..||..++..+.......+... ....... .+. + ..++++..+|.|..+|+
T Consensus 139 ~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~---~~~~~sp----~~~-~-~~v~~~~~~g~v~ald~ 207 (377)
T TIGR03300 139 SPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALT---LRGSASP----VIA-D-GGVLVGFAGGKLVALDL 207 (377)
T ss_pred cCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCcee---ecCCCCC----EEE-C-CEEEEECCCCEEEEEEc
Confidence 12211 235677788899999999999876555443311100 0000011 111 2 36777888888988887
Q ss_pred cCCCCCceeEEecc-----CCC--C---e-eEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccc
Q psy9598 648 DGVDSPLGILEVEE-----HSD--K---V-DSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSD 716 (1915)
Q Consensus 648 ~~~~~~~~i~~l~~-----h~~--~---V-~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~ 716 (1915)
.+.. .+..... ... . + .+..+ .+..+++++.+|.+..||..+++...... .
T Consensus 208 ~tG~---~~W~~~~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~~~g~l~a~d~~tG~~~W~~~-~------------ 269 (377)
T TIGR03300 208 QTGQ---PLWEQRVALPKGRTELERLVDVDGDPVV--DGGQVYAVSYQGRVAALDLRSGRVLWKRD-A------------ 269 (377)
T ss_pred cCCC---EeeeeccccCCCCCchhhhhccCCccEE--ECCEEEEEEcCCEEEEEECCCCcEEEeec-c------------
Confidence 4332 1211110 000 0 0 11111 24578888899999999999887443211 0
Q ss_pred cccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCC-CeEEEEEccCCCCEEEEEecCceEEEEECC
Q psy9598 717 ETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTN-EVFVLESHPFDSRVLLSAGHDGLIIIWDIL 795 (1915)
Q Consensus 717 ~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~-~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~ 795 (1915)
. .....+ ..+..|++++. +|.|..+|..+|+.+........ .+.+... .+..|++++.+|.|++||..
T Consensus 270 -~----~~~~p~--~~~~~vyv~~~-~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i---~g~~l~~~~~~G~l~~~d~~ 338 (377)
T TIGR03300 270 -S----SYQGPA--VDDNRLYVTDA-DGVVVALDRRSGSELWKNDELKYRQLTAPAV---VGGYLVVGDFEGYLHWLSRE 338 (377)
T ss_pred -C----CccCce--EeCCEEEEECC-CCeEEEEECCCCcEEEccccccCCccccCEE---ECCEEEEEeCCCEEEEEECC
Confidence 0 011111 24667777776 99999999999988766532211 1222222 35688899999999999999
Q ss_pred CCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEEeCCCeEEEE
Q psy9598 796 SSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVY 841 (1915)
Q Consensus 796 s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~dG~I~Iw 841 (1915)
+++. +..+. .+...+...-.. -+..|++++.||.|+.|
T Consensus 339 tG~~--~~~~~-----~~~~~~~~sp~~-~~~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 339 DGSF--VARLK-----TDGSGIASPPVV-VGDGLLVQTRDGDLYAF 376 (377)
T ss_pred CCCE--EEEEE-----cCCCccccCCEE-ECCEEEEEeCCceEEEe
Confidence 9987 55444 111112111111 23458889999999876
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.11 E-value=9.7e-08 Score=118.38 Aligned_cols=281 Identities=14% Similarity=0.184 Sum_probs=176.2
Q ss_pred EEEEeCC----CcEEEEEC--CCCceEEEe-ecCCCCeEEEEeccCccCCCcEEEEEeC----CCeEEEEecccCccccc
Q psy9598 533 LAAGTVD----KTIRIWNL--QTLAPISVL-VGHQGIITGVNFCPLEVNGFNYLASTST----DGCIGFWKYKLDIDISK 601 (1915)
Q Consensus 533 LaSgs~D----gtIrVWDl--~tg~~~~~l-~~h~~~V~sl~fsp~~~~d~~~L~sgs~----DgtI~iWDl~~~~~~~~ 601 (1915)
++.|+.. +.|.+|.+ .++.....- .........|+++|. +++|+++.. +|.|..|.+........
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~----~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~ 77 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPD----GRRLYVVNEGSGDSGGVSSYRIDPDTGTLT 77 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TT----SSEEEEEETTSSTTTEEEEEEEETTTTEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeC----CCEEEEEEccccCCCCEEEEEECCCcceeE
Confidence 4555554 68888888 444432211 123455677889884 478888766 57999998876521111
Q ss_pred eeccCccccccccCCCCCceEEEEECCCCcEEEEEe-CCCeEEEEEecCCCCCceeEEec-----------cCCCCeeEE
Q psy9598 602 TVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGS-GDHHVRVYKMDGVDSPLGILEVE-----------EHSDKVDSI 669 (1915)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs-~Dg~I~IwDl~~~~~~~~i~~l~-----------~h~~~V~sl 669 (1915)
.... ..........++++|++.+|+++. .+|.|.+|++............. .......++
T Consensus 78 ~~~~--------~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v 149 (345)
T PF10282_consen 78 LLNS--------VPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQV 149 (345)
T ss_dssp EEEE--------EEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEE
T ss_pred Eeee--------eccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeE
Confidence 1111 111224556799999999988876 48999999996433222221111 123457899
Q ss_pred EEcCCCCEEEEEe-CCCcEEEEEccCCc--eEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeE
Q psy9598 670 QWSHSHLRFVSGS-RDGTALIWYYKCSQ--WRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQI 746 (1915)
Q Consensus 670 ~fspdg~~L~sgs-~DG~I~IWDl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I 746 (1915)
.|+|+|++|++.. ....|.+|++.... +.... .........-..++|+|+++++++....++.|
T Consensus 150 ~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~-------------~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v 216 (345)
T PF10282_consen 150 VFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVD-------------SIKVPPGSGPRHLAFSPDGKYAYVVNELSNTV 216 (345)
T ss_dssp EE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEE-------------EEECSTTSSEEEEEE-TTSSEEEEEETTTTEE
T ss_pred EECCCCCEEEEEecCCCEEEEEEEeCCCceEEEee-------------ccccccCCCCcEEEEcCCcCEEEEecCCCCcE
Confidence 9999999887764 34578999887654 21100 00112445678899999999999999889999
Q ss_pred EEEECC--CCce--EEEeeC----C--CCCeEEEEEccCCCCEEEEEe-cCceEEEEECCC--CccccceeeeeeecCCC
Q psy9598 747 KIWDAF--NGDL--VQVLKG----H--TNEVFVLESHPFDSRVLLSAG-HDGLIIIWDILS--SKQRGYKWFHNIVEGQG 813 (1915)
Q Consensus 747 ~vwD~~--tg~~--i~~l~g----H--~~~V~sl~~sp~dg~~LaSgs-~DG~I~IWdl~s--~~~~~~~~~~~~~~~~~ 813 (1915)
.+|++. ++.+ +..+.. . ......|+++| ++++|+++. ..++|.+|++.. +.. ..+..+ .. .
T Consensus 217 ~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~isp-dg~~lyvsnr~~~sI~vf~~d~~~g~l---~~~~~~-~~-~ 290 (345)
T PF10282_consen 217 SVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISP-DGRFLYVSNRGSNSISVFDLDPATGTL---TLVQTV-PT-G 290 (345)
T ss_dssp EEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-T-TSSEEEEEECTTTEEEEEEECTTTTTE---EEEEEE-EE-S
T ss_pred EEEeecccCCceeEEEEeeeccccccccCCceeEEEec-CCCEEEEEeccCCEEEEEEEecCCCce---EEEEEE-eC-C
Confidence 999988 4432 233221 1 12578899999 888776654 577999999943 333 222211 11 2
Q ss_pred CcceEEEEEcCCCCEEEEEe-CCCeEEEEeCC
Q psy9598 814 EGALFDGKWSPDGTTCALTD-SYGHLLVYGLG 844 (1915)
Q Consensus 814 ~~~V~~vafSpdg~~Lasg~-~dG~I~Iwdl~ 844 (1915)
......++++|+|++|++++ .++.|.+|+++
T Consensus 291 G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 291 GKFPRHFAFSPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp SSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred CCCccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence 23478999999999999887 56789999875
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG2314|consensus | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.2e-08 Score=121.84 Aligned_cols=308 Identities=15% Similarity=0.135 Sum_probs=195.4
Q ss_pred EEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeC-----------CCcEEEEEC
Q psy9598 479 VFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTV-----------DKTIRIWNL 547 (1915)
Q Consensus 479 V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~-----------DgtIrVWDl 547 (1915)
=+-+.|||.|.||+|--.-| |.+|--.+...++.|. |. .|.-+.|||..+||+|-|. ...|+|||+
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI 289 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDI 289 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-CC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEc
Confidence 35688999999999998775 8899988877777775 54 4889999999999999753 257999999
Q ss_pred CCCceEEEeec--CCCCeE-EEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEE
Q psy9598 548 QTLAPISVLVG--HQGIIT-GVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCS 624 (1915)
Q Consensus 548 ~tg~~~~~l~~--h~~~V~-sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l 624 (1915)
.+|.....+.. ....++ -+.||. +..++|.-.. .+|.||+......+....+ .-..|...
T Consensus 290 ~tG~lkrsF~~~~~~~~~WP~frWS~----DdKy~Arm~~-~sisIyEtpsf~lld~Ksl------------ki~gIr~F 352 (698)
T KOG2314|consen 290 ATGLLKRSFPVIKSPYLKWPIFRWSH----DDKYFARMTG-NSISIYETPSFMLLDKKSL------------KISGIRDF 352 (698)
T ss_pred cccchhcceeccCCCccccceEEecc----CCceeEEecc-ceEEEEecCceeeeccccc------------CCccccCc
Confidence 99998887765 222333 356776 4478887776 4588887654322111111 12557888
Q ss_pred EECCCCcEEEEEeC-----CCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeC-------CC---cEEE
Q psy9598 625 SFSPGGLFLATGSG-----DHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSR-------DG---TALI 689 (1915)
Q Consensus 625 ~fspdg~~Lasgs~-----Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~-------DG---~I~I 689 (1915)
+|+|.+++||-=.. -..+.|..+ .....+.+..-|.-.=..|.|..+|.+|+.--. .| .+-|
T Consensus 353 swsP~~~llAYwtpe~~~~parvtL~ev---Ps~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eI 429 (698)
T KOG2314|consen 353 SWSPTSNLLAYWTPETNNIPARVTLMEV---PSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEI 429 (698)
T ss_pred ccCCCcceEEEEcccccCCcceEEEEec---CccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEE
Confidence 99999887764322 123344444 222222222223222234557777887765321 11 1233
Q ss_pred EEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEe--cCCeEEEEECCC----CceEEEeeCC
Q psy9598 690 WYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAIN--FNFQIKIWDAFN----GDLVQVLKGH 763 (1915)
Q Consensus 690 WDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~--~Dg~I~vwD~~t----g~~i~~l~gH 763 (1915)
+.++... ...........|...+|.|.|..+++-+. ...++.+|.+.+ ..++..|..
T Consensus 430 frireKd----------------Ipve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk- 492 (698)
T KOG2314|consen 430 FRIREKD----------------IPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK- 492 (698)
T ss_pred EEeeccC----------------CCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc-
Confidence 3333221 11122234567889999999987765543 234688887763 234444432
Q ss_pred CCCeEEEEEccCCCCEEEEEe---cCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEEeCC
Q psy9598 764 TNEVFVLESHPFDSRVLLSAG---HDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSY 835 (1915)
Q Consensus 764 ~~~V~sl~~sp~dg~~LaSgs---~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~d 835 (1915)
...+.|.|+| .|++++.++ ..|.+.++|..-..+ .. +....+...+.+.|.|.|++++++++.
T Consensus 493 -~~~N~vfwsP-kG~fvvva~l~s~~g~l~F~D~~~a~~--k~-----~~~~eh~~at~veWDPtGRYvvT~ss~ 558 (698)
T KOG2314|consen 493 -KFANTVFWSP-KGRFVVVAALVSRRGDLEFYDTDYADL--KD-----TASPEHFAATEVEWDPTGRYVVTSSSS 558 (698)
T ss_pred -cccceEEEcC-CCcEEEEEEecccccceEEEecchhhh--hh-----ccCccccccccceECCCCCEEEEeeeh
Confidence 3467899999 888887764 578999999875333 11 112234567789999999999998874
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.5e-07 Score=107.46 Aligned_cols=371 Identities=14% Similarity=0.141 Sum_probs=212.2
Q ss_pred EecccCCceeeeEEecCCCCcEEEEEEcCCCCEEEE-----E--ECCCcEEEEECCCCcEEEE-EeCCCCCEEEE-EEeC
Q psy9598 458 ISSHKYSNLRQHYVNLGHLSAVFCVLFDKLGEVIVT-----G--ADDLLIKLWRARDGKLLAT-LRGCSGEISDI-AIDN 528 (1915)
Q Consensus 458 i~~~~~~~~~~~~~l~gH~~~V~~vafspdg~~LaT-----G--s~Dg~I~IWd~~tg~~~~~-l~gH~~~I~~L-afsp 528 (1915)
+|.......+. .++..|.+-|+--.|+|+|+.+|. | ...+.|.+.+...|+..+. +-| ...+.+ -|.|
T Consensus 61 lWe~slk~g~~-~ritS~lGVvnn~kf~pdGrkvaf~rv~~~ss~~taDly~v~~e~Ge~kRiTyfG--r~fT~VaG~~~ 137 (668)
T COG4946 61 LWEYSLKDGKP-LRITSGLGVVNNPKFSPDGRKVAFSRVMLGSSLQTADLYVVPSEDGEAKRITYFG--RRFTRVAGWIP 137 (668)
T ss_pred HHHhhhccCCe-eEEecccceeccccCCCCCcEEEEEEEEecCCCccccEEEEeCCCCcEEEEEEec--cccceeeccCC
Confidence 35444444443 467889999999999999999886 2 2345688888888876543 223 334444 5899
Q ss_pred CCCEEEEEeCCCcE----EEEECCC----------CceEEEeecCCCCeEEEEe----ccCcc----CCCcEEEEEeCCC
Q psy9598 529 RNILLAAGTVDKTI----RIWNLQT----------LAPISVLVGHQGIITGVNF----CPLEV----NGFNYLASTSTDG 586 (1915)
Q Consensus 529 dg~~LaSgs~DgtI----rVWDl~t----------g~~~~~l~~h~~~V~sl~f----sp~~~----~d~~~L~sgs~Dg 586 (1915)
+|..|++...-.-. .+|.+.. |-..+.+... + +.-|.= .|... +....|.+++..|
T Consensus 138 dg~iiV~TD~~tPF~q~~~lYkv~~dg~~~e~LnlGpathiv~~d-g-~ivigRntydLP~WK~YkGGtrGklWis~d~g 215 (668)
T COG4946 138 DGEIIVSTDFHTPFSQWTELYKVNVDGIKTEPLNLGPATHIVIKD-G-IIVIGRNTYDLPHWKGYKGGTRGKLWISSDGG 215 (668)
T ss_pred CCCEEEEeccCCCcccceeeeEEccCCceeeeccCCceeeEEEeC-C-EEEEccCcccCcccccccCCccceEEEEecCC
Confidence 99988876432211 1222211 1111111110 0 111100 01000 0112333333333
Q ss_pred --eEEEEecccCccccceeccCccccccccCCCCCceEE-------------------EEECCCCcEEEEEeCCCeEEEE
Q psy9598 587 --CIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILC-------------------SSFSPGGLFLATGSGDHHVRVY 645 (1915)
Q Consensus 587 --tI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~-------------------l~fspdg~~Lasgs~Dg~I~Iw 645 (1915)
--++.|+.+......+..+ ..-+... ..+-+.+++ -..+.||+.|+.. ..|.|.+|
T Consensus 216 ~tFeK~vdl~~~vS~PmIV~~-RvYFlsD-~eG~GnlYSvdldGkDlrrHTnFtdYY~R~~nsDGkrIvFq-~~GdIyly 292 (668)
T COG4946 216 KTFEKFVDLDGNVSSPMIVGE-RVYFLSD-HEGVGNLYSVDLDGKDLRRHTNFTDYYPRNANSDGKRIVFQ-NAGDIYLY 292 (668)
T ss_pred cceeeeeecCCCcCCceEEcc-eEEEEec-ccCccceEEeccCCchhhhcCCchhccccccCCCCcEEEEe-cCCcEEEe
Confidence 2345555544221111111 0001000 011122333 3345577766653 45789999
Q ss_pred EecCCCCCceeE-EeccC--------CCCeeEEE-Ec-CCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccc
Q psy9598 646 KMDGVDSPLGIL-EVEEH--------SDKVDSIQ-WS-HSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKET 714 (1915)
Q Consensus 646 Dl~~~~~~~~i~-~l~~h--------~~~V~sl~-fs-pdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~ 714 (1915)
|..+.. ...+- .+.-. ..++.-+. |+ .+|.+++..|. |.+.|.+...+-.+
T Consensus 293 dP~td~-lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~~~~i---------------- 354 (668)
T COG4946 293 DPETDS-LEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWDGYSI---------------- 354 (668)
T ss_pred CCCcCc-ceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCCCeeE----------------
Confidence 874322 11111 00000 00111111 22 25667776665 55555543322211
Q ss_pred cccccccccEEEEEECCCCCEEEEEEecCC-eEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEE
Q psy9598 715 SDETNKKIKVTMVAWDASDRWVITAINFNF-QIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWD 793 (1915)
Q Consensus 715 ~~~~~~~~~V~~va~spdg~~L~t~s~~Dg-~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWd 793 (1915)
..++...|.-..+..++.-++.|.. || .|-|+|..+++. ..+...-+.|.++..++ +|.+++.+.+...|.+.|
T Consensus 355 --qv~~~~~VrY~r~~~~~e~~vigt~-dgD~l~iyd~~~~e~-kr~e~~lg~I~av~vs~-dGK~~vvaNdr~el~vid 429 (668)
T COG4946 355 --QVGKKGGVRYRRIQVDPEGDVIGTN-DGDKLGIYDKDGGEV-KRIEKDLGNIEAVKVSP-DGKKVVVANDRFELWVID 429 (668)
T ss_pred --EcCCCCceEEEEEccCCcceEEecc-CCceEEEEecCCceE-EEeeCCccceEEEEEcC-CCcEEEEEcCceEEEEEE
Confidence 2235566777788888888888888 77 899999987654 45556677899999999 999999999999999999
Q ss_pred CCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEEeCCC----eEEEEeCCCCcccccC-CC----ceeecCCCCe
Q psy9598 794 ILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYG----HLLVYGLGGFKRPQNI-PR----ELFFHTDYRT 864 (1915)
Q Consensus 794 l~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~dG----~I~Iwdl~s~~~~~~l-~~----~~~F~~d~~~ 864 (1915)
+.++... .+.....+-|+..+|||++++||.+--+| +|+|||+.+++.+... +. ..+|.+|++.
T Consensus 430 idngnv~-------~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ry 502 (668)
T COG4946 430 IDNGNVR-------LIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRY 502 (668)
T ss_pred ecCCCee-------EecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcE
Confidence 9999872 23334568899999999999999987665 5899999998766433 32 5578888887
Q ss_pred ee
Q psy9598 865 LN 866 (1915)
Q Consensus 865 Lv 866 (1915)
|.
T Consensus 503 LY 504 (668)
T COG4946 503 LY 504 (668)
T ss_pred EE
Confidence 75
|
|
| >KOG4547|consensus | Back alignment and domain information |
|---|
Probab=99.10 E-value=4.4e-09 Score=127.87 Aligned_cols=277 Identities=19% Similarity=0.115 Sum_probs=173.3
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCc
Q psy9598 528 NRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEP 607 (1915)
Q Consensus 528 pdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~ 607 (1915)
|...++|....||.++||++.+++....+. | .+..+..++...|.+..+.........
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~------------p--------~~~~s~t~~~~~w~L~~~~s~~k~~~~-- 60 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFA------------P--------IASLSGTCTYTKWGLSADYSPMKWLSL-- 60 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeec------------c--------chhccCcceeEEEEEEeccchHHHHhH--
Confidence 445688888999999999998877655443 2 112222334444543222110000000
Q ss_pred cccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcE
Q psy9598 608 VMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTA 687 (1915)
Q Consensus 608 ~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I 687 (1915)
.. ...-+.+...|+-|...|.|.+|++.+.. ......-.+|.+.|.++.++.+-..|.|++.|+.+
T Consensus 61 -----------~~--~~~~s~~t~~lvlgt~~g~v~~ys~~~g~-it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v 126 (541)
T KOG4547|consen 61 -----------EK--AKKASLDTSMLVLGTPQGSVLLYSVAGGE-ITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKV 126 (541)
T ss_pred -----------HH--HhhccCCceEEEeecCCccEEEEEecCCe-EEEEEecCCCCCcceeeecccccCceEecCCceeE
Confidence 00 00112244578889999999999984332 22223346799999999999999999999999999
Q ss_pred EEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCCCe
Q psy9598 688 LIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEV 767 (1915)
Q Consensus 688 ~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V 767 (1915)
..|++......... ......+.+++.+|||..+++++ +.|++||+.+++.+..|.||.++|
T Consensus 127 ~~~~~~~~~~~~~~----------------~~~~~~~~sl~is~D~~~l~~as---~~ik~~~~~~kevv~~ftgh~s~v 187 (541)
T KOG4547|consen 127 VYILEKEKVIIRIW----------------KEQKPLVSSLCISPDGKILLTAS---RQIKVLDIETKEVVITFTGHGSPV 187 (541)
T ss_pred EEEecccceeeeee----------------ccCCCccceEEEcCCCCEEEecc---ceEEEEEccCceEEEEecCCCcce
Confidence 99999887744422 22345678899999999999885 599999999999999999999999
Q ss_pred EEEEEccC----CCCEE-EEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEE-cCCCC---EEEEEeCCCeE
Q psy9598 768 FVLESHPF----DSRVL-LSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKW-SPDGT---TCALTDSYGHL 838 (1915)
Q Consensus 768 ~sl~~sp~----dg~~L-aSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vaf-Spdg~---~Lasg~~dG~I 838 (1915)
.++.|.-. .|.++ .+...+.-|.+|-+..... .......+. ...-+|+.=.+ ..|+. .+|+....|.+
T Consensus 188 ~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~~k--kks~~~sl~-~~dipv~~ds~~~ed~~~~l~lAst~~~g~v 264 (541)
T KOG4547|consen 188 RTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKEDK--KKSLSCSLT-VPDIPVTSDSGLLEDGTIPLVLASTLIPGIV 264 (541)
T ss_pred EEEEEEEeccccccceeeeccccccceeEEEEEcccc--cchhheeec-cCCCCeEeccccccccccceEEeeeccCcee
Confidence 99999872 14444 4455677788887765222 111110011 11122222222 22333 45666676766
Q ss_pred EEEeCC----CCcccccCCCceeecCCC
Q psy9598 839 LVYGLG----GFKRPQNIPRELFFHTDY 862 (1915)
Q Consensus 839 ~Iwdl~----s~~~~~~l~~~~~F~~d~ 862 (1915)
.++... ..+.+..++...++..++
T Consensus 265 ~~~~~nl~~l~~~~~~kv~~~~~~~s~g 292 (541)
T KOG4547|consen 265 HLKLSNLIILLHKKIVKVNGYNADSSKG 292 (541)
T ss_pred eeccccHHHHhcCccccccceeeecccc
Confidence 666544 333444444555666655
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.4e-08 Score=129.73 Aligned_cols=233 Identities=16% Similarity=0.073 Sum_probs=149.4
Q ss_pred CcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCC---CcEEEEECCCCceEEEeecCCCCeEEEEeccCccC
Q psy9598 498 LLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVD---KTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVN 574 (1915)
Q Consensus 498 g~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~D---gtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~ 574 (1915)
..|.++|... .....+..+...+.+.+|+|||++|+.++.. ..|++||+.++.... +..+.+.+.+++|+|++
T Consensus 170 ~~l~~~d~~g-~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg-- 245 (417)
T TIGR02800 170 YELQVADYDG-ANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDG-- 245 (417)
T ss_pred ceEEEEcCCC-CCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCC--
Confidence 3688888754 3345555677789999999999999887654 479999999886543 33455667789999943
Q ss_pred CCcEE-EEEeCCC--eEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeC-CC--eEEEEEec
Q psy9598 575 GFNYL-ASTSTDG--CIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSG-DH--HVRVYKMD 648 (1915)
Q Consensus 575 d~~~L-~sgs~Dg--tI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~-Dg--~I~IwDl~ 648 (1915)
..| ++.+.++ .|.+|++.++.... + ..+........|+|+|..|+.++. .+ .|.+|++.
T Consensus 246 --~~l~~~~~~~~~~~i~~~d~~~~~~~~-l------------~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~ 310 (417)
T TIGR02800 246 --SKLAVSLSKDGNPDIYVMDLDGKQLTR-L------------TNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDAD 310 (417)
T ss_pred --CEEEEEECCCCCccEEEEECCCCCEEE-C------------CCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECC
Confidence 544 4555554 58888887653211 1 111123345689999998876654 33 46666764
Q ss_pred CCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCC---cEEEEEccCCceEEeeecccccCCCCccccccccccccEE
Q psy9598 649 GVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDG---TALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVT 725 (1915)
Q Consensus 649 ~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG---~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~ 725 (1915)
+.. ...+..+...+..+.|+|+|.+|+.++.++ .|.+||+.++....+.. .....
T Consensus 311 ~~~----~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~------------------~~~~~ 368 (417)
T TIGR02800 311 GGE----VRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTD------------------TGLDE 368 (417)
T ss_pred CCC----EEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccC------------------CCCCC
Confidence 321 233444556677889999999999888776 78888887755322110 01122
Q ss_pred EEEECCCCCEEEEEEecCC--eEEEEECCCCceEEEeeCCCCCeEEEEE
Q psy9598 726 MVAWDASDRWVITAINFNF--QIKIWDAFNGDLVQVLKGHTNEVFVLES 772 (1915)
Q Consensus 726 ~va~spdg~~L~t~s~~Dg--~I~vwD~~tg~~i~~l~gH~~~V~sl~~ 772 (1915)
..+|+|+|.+|+.++..++ .+++.+. ++.....+..+.+.+..++|
T Consensus 369 ~p~~spdg~~l~~~~~~~~~~~l~~~~~-~g~~~~~~~~~~g~~~~~~w 416 (417)
T TIGR02800 369 SPSFAPNGRMILYATTRGGRGVLGLVST-DGRFRARLPLGNGDVREPAW 416 (417)
T ss_pred CceECCCCCEEEEEEeCCCcEEEEEEEC-CCceeeECCCCCCCcCCCCC
Confidence 3579999999988877333 3555553 45555555544444544444
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG1828|consensus | Back alignment and domain information |
|---|
Probab=99.08 E-value=4.9e-11 Score=137.20 Aligned_cols=206 Identities=14% Similarity=0.095 Sum_probs=135.0
Q ss_pred ChHHHHhhcccccCCHHHHHHHHHHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHhcCCC---CCCCcchhh---------
Q psy9598 1 LTTLRARFQNRFYRRITSAQFDVRYLAANAEKFNEPHSNIVKYARIITDLLLRIIKEPN---PVDVPVVYH--------- 68 (1915)
Q Consensus 1 L~tI~~kl~~~~Y~~~~ef~~D~~li~~Na~~yN~p~s~I~~~A~~l~~~~~~~~~~~~---~~~~~~~~~--------- 68 (1915)
+.||+.|++.++|.++.+|..|+++|..||..||.++-.++..|++|..+...+..+.. ..+....|.
T Consensus 62 ~~t~r~kidd~~yl~L~~m~~d~kl~~~na~~yn~~~Tv~~~aaKrL~~v~~~~~qe~~l~f~~~slg~y~~~rn~~~~v 141 (418)
T KOG1828|consen 62 RITKRSKIDDTRYLVLSQMEFDRKLPDGNATLYNLHPTVPIVAAKRLCPVRLGMTQERLLSFVNTSLGFYEDKRNKVTPV 141 (418)
T ss_pred cccccccCCCccceechhhhhhhcccccchhhhhcCCccccccccccchhhcchhhHHHHHhhhcccchhhhcccccCce
Confidence 46899999999999999999999999999999999999999999999877533222211 000000000
Q ss_pred -----------hhccccCCCCCcccccc---cccccccccCCCCcchhhhhhhhccccC-----CchhHHHHHHHHHHHH
Q psy9598 69 -----------ELLQNYETSSSEEEEEE---DSKSRQRRVRPTAVTRAQREAMNQKKLK-----RPFNWKNECREVLETL 129 (1915)
Q Consensus 69 -----------~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~il~~l 129 (1915)
.-.+...+..-+++.-. ....++....-+ .........+.-..+ ......+.......+|
T Consensus 142 ~~la~~~~sr~~~~d~~a~~s~ee~~l~v~~~e~~~~~~~~fs-~k~~e~~~e~~~~lgds~g~lqtg~~~l~~~q~~kl 220 (418)
T KOG1828|consen 142 LYLAYGPYSRYHYDDTFANISKEESDLIVSTYEEDSDLPSDFS-HKFLETCQERVVTLGDSVGDLQTGGQQLQTLQEDKL 220 (418)
T ss_pred eeeccCCccchhhhhhcCCCccccccccccccccccccccccc-ccccccCccceEehhhhhhhhccccHHHHHHHHHHh
Confidence 00000111111111100 001111111111 000000000000000 0111223344456677
Q ss_pred hcCCCCCCCCCCCCCCCCCCccccCCCcCCHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHH
Q psy9598 130 WVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQNKRSKIYIMTTRLSE 209 (1915)
Q Consensus 130 ~~~~~~~~F~~pvd~~~~pdY~~iIk~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~Lif~N~~~yN~~~~s~i~~~a~~l~~ 209 (1915)
........|..||....+|.|.-+|++|||++|++.|..++.|.| -+|..|+.||+.||++||.+. ..+|.+|+.+..
T Consensus 221 ~~~~p~~~lnyg~tas~aP~YSm~Ik~~~~~~Tygdk~~andy~S-~~f~~D~kl~~l~amT~gehs-k~yyelank~lh 298 (418)
T KOG1828|consen 221 NRVDPVAYLNYGPTASFAPGYSMTITEVEPPGTYGDKSSANDYES-LSFTQDRKLIALKAVTNGEHS-KSYYELANKQLH 298 (418)
T ss_pred cccCchhhhcccchhhhcccccccccccCCCcchhhhhhhhhhhh-hhhhcccchhhHHHHhcCCcc-hHHHHHHHhhhh
Confidence 788889999999999999999999999999999999999999999 899999999999999999966 888888888776
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.9e-07 Score=105.90 Aligned_cols=281 Identities=15% Similarity=0.158 Sum_probs=183.7
Q ss_pred CCcEEEEECCCC--cE-EEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCcc
Q psy9598 497 DLLIKLWRARDG--KL-LATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEV 573 (1915)
Q Consensus 497 Dg~I~IWd~~tg--~~-~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~ 573 (1915)
+.-|.+|++.+. ++ ...+-.+.+.++-|+|++++++|.++-.++. .+.|.+..|.+.
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~------------------~ggvaay~iD~~-- 74 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGE------------------EGGVAAYRIDPD-- 74 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCC------------------cCcEEEEEEcCC--
Confidence 457999998732 22 1223356778899999999999998876643 344555555542
Q ss_pred CCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeC-CCeEEEEEecCCCC
Q psy9598 574 NGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSG-DHHVRVYKMDGVDS 652 (1915)
Q Consensus 574 ~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~-Dg~I~IwDl~~~~~ 652 (1915)
||.+.+.+-... .+ ...+.++++++|++|+++.. -|.|.++-+.....
T Consensus 75 -----------~G~Lt~ln~~~~-------------------~g-~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~ 123 (346)
T COG2706 75 -----------DGRLTFLNRQTL-------------------PG-SPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGS 123 (346)
T ss_pred -----------CCeEEEeecccc-------------------CC-CCCeEEEECCCCCEEEEEEccCceEEEEEcccCCc
Confidence 344444332111 01 22266888889988887755 47888888865444
Q ss_pred CceeEEeccCCCC----------eeEEEEcCCCCEEEEEeC-CCcEEEEEccCCceEEeeecccccCCCCcccccccccc
Q psy9598 653 PLGILEVEEHSDK----------VDSIQWSHSHLRFVSGSR-DGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKK 721 (1915)
Q Consensus 653 ~~~i~~l~~h~~~----------V~sl~fspdg~~L~sgs~-DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 721 (1915)
.........|.+. +.+..|.|++++|++... -..|.+|++..+.+.... .......
T Consensus 124 l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~-------------~~~v~~G 190 (346)
T COG2706 124 LQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPAD-------------PAEVKPG 190 (346)
T ss_pred cccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCcccccc-------------ccccCCC
Confidence 4444444455555 888999999999888763 346889998866532211 1111345
Q ss_pred ccEEEEEECCCCCEEEEEEecCCeEEEEECCCC-ceEEEeeCC---------CCCeEEEEEccCCCCEEEEEec-CceEE
Q psy9598 722 IKVTMVAWDASDRWVITAINFNFQIKIWDAFNG-DLVQVLKGH---------TNEVFVLESHPFDSRVLLSAGH-DGLII 790 (1915)
Q Consensus 722 ~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg-~~i~~l~gH---------~~~V~sl~~sp~dg~~LaSgs~-DG~I~ 790 (1915)
..-..|.|+|++++.++.+..+++|-+|..... ..+..++.+ .....+|.+++ +|++|.++.. ...|.
T Consensus 191 ~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~-dGrFLYasNRg~dsI~ 269 (346)
T COG2706 191 AGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISP-DGRFLYASNRGHDSIA 269 (346)
T ss_pred CCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECC-CCCEEEEecCCCCeEE
Confidence 567789999999999999988999999998763 223333221 23567888999 9999887742 33788
Q ss_pred EEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEEeCC-CeEEEEeCCC
Q psy9598 791 IWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSY-GHLLVYGLGG 845 (1915)
Q Consensus 791 IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~d-G~I~Iwdl~s 845 (1915)
+|.+..... ...+..... .+.....+..|+++|++|+++..+ .+|.||..+.
T Consensus 270 ~f~V~~~~g--~L~~~~~~~-teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~ 322 (346)
T COG2706 270 VFSVDPDGG--KLELVGITP-TEGQFPRDFNINPSGRFLIAANQKSDNITVFERDK 322 (346)
T ss_pred EEEEcCCCC--EEEEEEEec-cCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcC
Confidence 888865433 222222222 122336788999999999988755 4688998764
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.05 E-value=4.6e-07 Score=109.79 Aligned_cols=277 Identities=11% Similarity=0.079 Sum_probs=170.5
Q ss_pred CcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeC----------CCcEEEEECCCCceEEEeecCC-------
Q psy9598 498 LLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTV----------DKTIRIWNLQTLAPISVLVGHQ------- 560 (1915)
Q Consensus 498 g~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~----------DgtIrVWDl~tg~~~~~l~~h~------- 560 (1915)
++|.|.|..+++.+.++.....+-. + ++|||+.|+.+.. +..|.|||+.+++.+..+..-.
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~ 104 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG 104 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence 7999999999999998875443332 4 9999998887765 7899999999999998886422
Q ss_pred CCeEEEEeccCccCCCcEEEEEe-C-CCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeC
Q psy9598 561 GIITGVNFCPLEVNGFNYLASTS-T-DGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSG 638 (1915)
Q Consensus 561 ~~V~sl~fsp~~~~d~~~L~sgs-~-DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~ 638 (1915)
.....++++| ++++|+... . ++.|.+.|+.+++.+..+.... ...-...+.++.+ +-+.
T Consensus 105 ~~~~~~~ls~----dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-------------~~~vy~t~e~~~~--~~~~ 165 (352)
T TIGR02658 105 TYPWMTSLTP----DNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-------------CYHIFPTANDTFF--MHCR 165 (352)
T ss_pred CccceEEECC----CCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-------------CcEEEEecCCccE--EEee
Confidence 2334788888 447777655 4 7899999999987655554321 0111111111111 1223
Q ss_pred CCeEEEEEecCCCCCceeEE---eccCCCCeeEE-EEcC-CCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCcc
Q psy9598 639 DHHVRVYKMDGVDSPLGILE---VEEHSDKVDSI-QWSH-SHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKE 713 (1915)
Q Consensus 639 Dg~I~IwDl~~~~~~~~i~~---l~~h~~~V~sl-~fsp-dg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~ 713 (1915)
||......+..... ..... +.+-..++..= .|++ +|.++++... |+|.+.|+.......... .. .... .
T Consensus 166 Dg~~~~v~~d~~g~-~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~-~~-~~~~--~ 239 (352)
T TIGR02658 166 DGSLAKVGYGTKGN-PKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPA-IE-AFTE--A 239 (352)
T ss_pred cCceEEEEecCCCc-eEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecce-ee-eccc--c
Confidence 34333333321111 00111 11100000000 3445 7877777666 999999976544221100 00 0000 0
Q ss_pred ccccccccccEEEEEECCCCCEEEEEEe---------cCCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCC-EEEEE
Q psy9598 714 TSDETNKKIKVTMVAWDASDRWVITAIN---------FNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSR-VLLSA 783 (1915)
Q Consensus 714 ~~~~~~~~~~V~~va~spdg~~L~t~s~---------~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~-~LaSg 783 (1915)
.....-....+.-++++++++.++++.. ..+.|.++|..+++.+..+.. ...+..|+++| |++ +|++.
T Consensus 240 ~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~-Dgkp~lyvt 317 (352)
T TIGR02658 240 EKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQ-DAKPLLYAL 317 (352)
T ss_pred ccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECC-CCCeEEEEe
Confidence 0000112334445999999999998531 125899999999999998873 23689999999 777 77655
Q ss_pred e-cCceEEEEECCCCccccceee
Q psy9598 784 G-HDGLIIIWDILSSKQRGYKWF 805 (1915)
Q Consensus 784 s-~DG~I~IWdl~s~~~~~~~~~ 805 (1915)
. .++.|.|.|+.+++. +..+
T Consensus 318 n~~s~~VsViD~~t~k~--i~~i 338 (352)
T TIGR02658 318 STGDKTLYIFDAETGKE--LSSV 338 (352)
T ss_pred CCCCCcEEEEECcCCeE--Eeee
Confidence 5 688999999999887 5554
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=99.05 E-value=5.2e-07 Score=123.11 Aligned_cols=369 Identities=15% Similarity=0.154 Sum_probs=219.5
Q ss_pred CCeEEEe----cccCCceeeeEEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECC---------------C------
Q psy9598 453 SRSLMIS----SHKYSNLRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRAR---------------D------ 507 (1915)
Q Consensus 453 d~~~~i~----~~~~~~~~~~~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~---------------t------ 507 (1915)
+|.+.+. +.....+..+-.+ .++|.|++||||+.+||..+.+|+|.+-+.. .
T Consensus 96 ~Gdi~~~~~~~~~~~~~~E~VG~v---d~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsV 172 (928)
T PF04762_consen 96 SGDIILVREDPDPDEDEIEIVGSV---DSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSV 172 (928)
T ss_pred CceEEEEEccCCCCCceeEEEEEE---cCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeee
Confidence 4444444 3333444443333 4789999999999999999999998886521 0
Q ss_pred --CcEEEEEeC------------------------CCCCEEEEEEeCCCCEEEEEeC---C---CcEEEEECCCCceEEE
Q psy9598 508 --GKLLATLRG------------------------CSGEISDIAIDNRNILLAAGTV---D---KTIRIWNLQTLAPISV 555 (1915)
Q Consensus 508 --g~~~~~l~g------------------------H~~~I~~Lafspdg~~LaSgs~---D---gtIrVWDl~tg~~~~~ 555 (1915)
|+.-..|.| +...-..|+|-.||.++|+.+. . ..||||+-+ |....+
T Consensus 173 GWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~st 251 (928)
T PF04762_consen 173 GWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQST 251 (928)
T ss_pred ccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEec
Confidence 111111111 2224467899999999998875 2 579999965 665554
Q ss_pred eecCCCCeEEEEeccCccCCCcEEEEEeC---CCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcE
Q psy9598 556 LVGHQGIITGVNFCPLEVNGFNYLASTST---DGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLF 632 (1915)
Q Consensus 556 l~~h~~~V~sl~fsp~~~~d~~~L~sgs~---DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~ 632 (1915)
-..-.+--.+++|.|.+ ++|++... ...|.||.-++-. ... |...+.+....|..+.|++++..
T Consensus 252 SE~v~gLe~~l~WrPsG----~lIA~~q~~~~~~~VvFfErNGLr---hge------F~l~~~~~~~~v~~l~Wn~ds~i 318 (928)
T PF04762_consen 252 SEPVDGLEGALSWRPSG----NLIASSQRLPDRHDVVFFERNGLR---HGE------FTLRFDPEEEKVIELAWNSDSEI 318 (928)
T ss_pred cccCCCccCCccCCCCC----CEEEEEEEcCCCcEEEEEecCCcE---eee------EecCCCCCCceeeEEEECCCCCE
Confidence 44444455688999954 78887764 3467777533221 111 12222344577899999999999
Q ss_pred EEEEeCCCeEEEEEecCCCCCceeEEec-cCCCCeeEEEEcCCC-CEEEEEeCCCcEEEEEcc----CCc--------eE
Q psy9598 633 LATGSGDHHVRVYKMDGVDSPLGILEVE-EHSDKVDSIQWSHSH-LRFVSGSRDGTALIWYYK----CSQ--------WR 698 (1915)
Q Consensus 633 Lasgs~Dg~I~IwDl~~~~~~~~i~~l~-~h~~~V~sl~fspdg-~~L~sgs~DG~I~IWDl~----~~~--------~~ 698 (1915)
||+...|. |.+|-.. ......-..+. .....+..+.|+|.. ..|...+.+|.+..+++. .+. ..
T Consensus 319 LAv~~~~~-vqLWt~~-NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~v 396 (928)
T PF04762_consen 319 LAVWLEDR-VQLWTRS-NYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTV 396 (928)
T ss_pred EEEEecCC-ceEEEee-CCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEE
Confidence 99987665 9999983 23322223332 223345569999864 457777776777655442 111 00
Q ss_pred Ee-------eecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCce--------EEEee--
Q psy9598 699 FI-------RLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDL--------VQVLK-- 761 (1915)
Q Consensus 699 ~~-------~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~--------i~~l~-- 761 (1915)
.. ...+.......+...........|..++|++++..+++-.. ||.|.+|....... ...+.
T Consensus 397 aVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~-d~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (928)
T PF04762_consen 397 AVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTS-DGSLSIYEWDLKNMWSVKPPKLLSSISLD 475 (928)
T ss_pred EEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEEC-CCCEEEEEecCCCcccccCcchhhhcccc
Confidence 00 00111111111122223345678999999999987777777 99999988543211 11111
Q ss_pred --------CCCCCeEEEEEccCCCCEEEEEecC---ceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEE
Q psy9598 762 --------GHTNEVFVLESHPFDSRVLLSAGHD---GLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCA 830 (1915)
Q Consensus 762 --------gH~~~V~sl~~sp~dg~~LaSgs~D---G~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~La 830 (1915)
.-...+..++|.. +..+++....+ +.|.++++..... ...+... ....+.+..+...++...++
T Consensus 476 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 550 (928)
T PF04762_consen 476 SMDISDSELPLGSLRQLAWLN-DDTLLVLSDSDSNQSKIVLVDIDDSEN--SASVESS--TEVDGVVLIISSSPDSGSLY 550 (928)
T ss_pred cccccccccccccEEEEEEeC-CCEEEEEEecCcccceEEEEEeccCCC--ceeEEEE--eccCceEEEEeeCCCCcEEE
Confidence 1233567788876 55555554443 6788888854432 1111111 12345666666677666677
Q ss_pred EEeCCCeEEEEeCCCC
Q psy9598 831 LTDSYGHLLVYGLGGF 846 (1915)
Q Consensus 831 sg~~dG~I~Iwdl~s~ 846 (1915)
.-..+|.|...+....
T Consensus 551 ~q~~~G~v~~~~~~~~ 566 (928)
T PF04762_consen 551 IQTNDGKVFQLSSDGE 566 (928)
T ss_pred EEECCCEEEEeecCCC
Confidence 7788999987766654
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.7e-08 Score=127.31 Aligned_cols=234 Identities=14% Similarity=0.037 Sum_probs=145.5
Q ss_pred cEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCC---CcEEEEECCCCceEEEeecCCCCeEEEEeccCccCC
Q psy9598 499 LIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVD---KTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNG 575 (1915)
Q Consensus 499 ~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~D---gtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d 575 (1915)
.|.++|...... ..+..+...+.+..|+|||+.|+..+.+ ..|.+||+.++.... +....+.....+|+|++
T Consensus 199 ~l~i~d~dG~~~-~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG--- 273 (448)
T PRK04792 199 QLMIADYDGYNE-QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDG--- 273 (448)
T ss_pred EEEEEeCCCCCc-eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCC---
Confidence 677778654433 4555667789999999999988876543 258899998877533 22223344578999954
Q ss_pred CcEE-EEEeCCCe--EEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeC-CCe--EEEEEecC
Q psy9598 576 FNYL-ASTSTDGC--IGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSG-DHH--VRVYKMDG 649 (1915)
Q Consensus 576 ~~~L-~sgs~Dgt--I~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~-Dg~--I~IwDl~~ 649 (1915)
..| ++.+.+|. |.+||+.++... . +..+.......+|+|+|++|+..+. +|. |.++|+.+
T Consensus 274 -~~La~~~~~~g~~~Iy~~dl~tg~~~-~------------lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~ 339 (448)
T PRK04792 274 -KKLALVLSKDGQPEIYVVDIATKALT-R------------ITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLAS 339 (448)
T ss_pred -CEEEEEEeCCCCeEEEEEECCCCCeE-E------------CccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCC
Confidence 555 45666775 666677665321 1 1112234567899999998876554 444 55555532
Q ss_pred CCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeC-CCc--EEEEEccCCceEEeeecccccCCCCccccccccccccEEE
Q psy9598 650 VDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSR-DGT--ALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTM 726 (1915)
Q Consensus 650 ~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~-DG~--I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~ 726 (1915)
.. ...+ +..+ ......+|+|+|.+|+..+. ++. |.++|+.++....+.. . .....
T Consensus 340 g~-~~~L-t~~g--~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt~-----------------~-~~d~~ 397 (448)
T PRK04792 340 GK-VSRL-TFEG--EQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQVLTS-----------------T-RLDES 397 (448)
T ss_pred CC-EEEE-ecCC--CCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEEccC-----------------C-CCCCC
Confidence 21 1111 2222 23345789999998877654 443 4456666665322110 0 00112
Q ss_pred EEECCCCCEEEEEEecCC--eEEEEECCCCceEEEeeCCCCCeEEEEEcc
Q psy9598 727 VAWDASDRWVITAINFNF--QIKIWDAFNGDLVQVLKGHTNEVFVLESHP 774 (1915)
Q Consensus 727 va~spdg~~L~t~s~~Dg--~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp 774 (1915)
..|+|+|+.|+.+...++ .|++++. +|.....+..+.+.+...+|+|
T Consensus 398 ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 398 PSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred ceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCCCCCcCCCccCC
Confidence 479999999988776444 3777786 6777777777777788888987
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=6.8e-08 Score=123.84 Aligned_cols=234 Identities=14% Similarity=0.091 Sum_probs=145.1
Q ss_pred cEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCC---CeEEEEecccCccccceeccCccccccccCCC
Q psy9598 541 TIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTD---GCIGFWKYKLDIDISKTVFHEPVMFNERIRPG 617 (1915)
Q Consensus 541 tIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~D---gtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~ 617 (1915)
.|.++|...+. ...+..+...+.+..|+|+ ++.|+..+.+ ..|.+|++.++...... ..
T Consensus 180 ~l~~~d~~g~~-~~~l~~~~~~~~~p~wSpD----G~~la~~s~~~~~~~l~~~~l~~g~~~~l~-------------~~ 241 (430)
T PRK00178 180 TLQRSDYDGAR-AVTLLQSREPILSPRWSPD----GKRIAYVSFEQKRPRIFVQNLDTGRREQIT-------------NF 241 (430)
T ss_pred EEEEECCCCCC-ceEEecCCCceeeeeECCC----CCEEEEEEcCCCCCEEEEEECCCCCEEEcc-------------CC
Confidence 47888887554 4555567778999999994 4777666543 36888998876431111 11
Q ss_pred CCceEEEEECCCCcEEEE-EeCCC--eEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeC-CC--cEEEEE
Q psy9598 618 NAHILCSSFSPGGLFLAT-GSGDH--HVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSR-DG--TALIWY 691 (1915)
Q Consensus 618 ~~~V~~l~fspdg~~Las-gs~Dg--~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~-DG--~I~IWD 691 (1915)
.+.+.+.+|+|+|+.|+. ...+| .|.+||+.+.. ...+..+........|+|+|..|+..+. +| .|.+|+
T Consensus 242 ~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~----~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d 317 (430)
T PRK00178 242 EGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQ----LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVN 317 (430)
T ss_pred CCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCC----eEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEE
Confidence 133456899999998874 44454 57778884322 2334455556677889999998776553 34 466667
Q ss_pred ccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCC--eEEEEECCCCceEEEeeCCCCCeEE
Q psy9598 692 YKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNF--QIKIWDAFNGDLVQVLKGHTNEVFV 769 (1915)
Q Consensus 692 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg--~I~vwD~~tg~~i~~l~gH~~~V~s 769 (1915)
+.++....+.. ........+|+|+|.+|+.....++ .|.+||+.++........ .....
T Consensus 318 ~~~g~~~~lt~-----------------~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~--~~~~~ 378 (430)
T PRK00178 318 VNGGRAERVTF-----------------VGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDT--SLDES 378 (430)
T ss_pred CCCCCEEEeec-----------------CCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEccCC--CCCCC
Confidence 76666433211 0111234689999999988775333 588999988765332222 22235
Q ss_pred EEEccCCCCEEEEEecC---ceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcC
Q psy9598 770 LESHPFDSRVLLSAGHD---GLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSP 824 (1915)
Q Consensus 770 l~~sp~dg~~LaSgs~D---G~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSp 824 (1915)
..|+| ++++|+.++.+ +.|.++++..... ..+. .+.+.+...+|+|
T Consensus 379 p~~sp-dg~~i~~~~~~~g~~~l~~~~~~g~~~---~~l~-----~~~g~~~~p~ws~ 427 (430)
T PRK00178 379 PSVAP-NGTMLIYATRQQGRGVLMLVSINGRVR---LPLP-----TAQGEVREPSWSP 427 (430)
T ss_pred ceECC-CCCEEEEEEecCCceEEEEEECCCCce---EECc-----CCCCCcCCCccCC
Confidence 68999 88877766543 3567777753322 1221 2335566777876
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=99.01 E-value=3.2e-07 Score=125.20 Aligned_cols=337 Identities=16% Similarity=0.125 Sum_probs=201.8
Q ss_pred CCCcEEEEEEcCCCCEEEEEECCCcEEEE----ECCCC--cEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECC
Q psy9598 475 HLSAVFCVLFDKLGEVIVTGADDLLIKLW----RARDG--KLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQ 548 (1915)
Q Consensus 475 H~~~V~~vafspdg~~LaTGs~Dg~I~IW----d~~tg--~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~ 548 (1915)
..+.|.++.|-++..-|+.+..+|.|.+. +..+. +.+.. -...|.|++||||+.+|+..+.+++|.+.+ .
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~---vd~GI~a~~WSPD~Ella~vT~~~~l~~mt-~ 149 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGS---VDSGILAASWSPDEELLALVTGEGNLLLMT-R 149 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEE---EcCcEEEEEECCCcCEEEEEeCCCEEEEEe-c
Confidence 45789999999999999999999999999 54443 23333 357899999999999999999999988875 4
Q ss_pred CCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccc--eeccCccccccccCCCCCceEEEEE
Q psy9598 549 TLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISK--TVFHEPVMFNERIRPGNAHILCSSF 626 (1915)
Q Consensus 549 tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~--~~~~~~~~~~~~~~~~~~~V~~l~f 626 (1915)
+..++....-+.... +....++.|+...=.-|.-..++.... .....+..-...+. ....-..++|
T Consensus 150 ~fd~i~E~~l~~~~~-----------~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISW 217 (928)
T PF04762_consen 150 DFDPISEVPLDSDDF-----------GESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISW 217 (928)
T ss_pred cceEEEEeecCcccc-----------CCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEE
Confidence 455555444332111 113344544433222221111111000 00000000011111 3345678999
Q ss_pred CCCCcEEEEEeC---C---CeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeC---CCcEEEEEccCCce
Q psy9598 627 SPGGLFLATGSG---D---HHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSR---DGTALIWYYKCSQW 697 (1915)
Q Consensus 627 spdg~~Lasgs~---D---g~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~---DG~I~IWDl~~~~~ 697 (1915)
-.||.++|+.+. . ..|+||+-.+ ........-.+--.+++|.|.|++|++.-. ...|.+|.-+..+
T Consensus 218 RGDG~yFAVss~~~~~~~~R~iRVy~ReG----~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLr- 292 (928)
T PF04762_consen 218 RGDGEYFAVSSVEPETGSRRVIRVYSREG----ELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLR- 292 (928)
T ss_pred CCCCcEEEEEEEEcCCCceeEEEEECCCc----eEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcE-
Confidence 999999998875 2 4789998632 222222233344567899999999888764 2345555322211
Q ss_pred EEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCc--eEEEeeC-CCCCeEEEEEcc
Q psy9598 698 RFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGD--LVQVLKG-HTNEVFVLESHP 774 (1915)
Q Consensus 698 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~--~i~~l~g-H~~~V~sl~~sp 774 (1915)
+-. ...........|..+.|++++..|++... | .|.+|-..+.. +-+.+.. ....+..+.|+|
T Consensus 293 -hge-----------F~l~~~~~~~~v~~l~Wn~ds~iLAv~~~-~-~vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdp 358 (928)
T PF04762_consen 293 -HGE-----------FTLRFDPEEEKVIELAWNSDSEILAVWLE-D-RVQLWTRSNYHWYLKQEIRFSSSESVNFVKWDP 358 (928)
T ss_pred -eee-----------EecCCCCCCceeeEEEECCCCCEEEEEec-C-CceEEEeeCCEEEEEEEEEccCCCCCCceEECC
Confidence 100 01111234567899999999999999775 4 49999987754 2333332 233455599999
Q ss_pred CCCCEEEEEecCceEEEEEC----CCCccc----------------cceeeeee--------ecCCCCcceEEEEEcCCC
Q psy9598 775 FDSRVLLSAGHDGLIIIWDI----LSSKQR----------------GYKWFHNI--------VEGQGEGALFDGKWSPDG 826 (1915)
Q Consensus 775 ~dg~~LaSgs~DG~I~IWdl----~s~~~~----------------~~~~~~~~--------~~~~~~~~V~~vafSpdg 826 (1915)
.+...|..+..+|.+.++++ ..+... .+..|... ..-.-..+|.+++|++++
T Consensus 359 e~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~ 438 (928)
T PF04762_consen 359 EKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSN 438 (928)
T ss_pred CCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCC
Confidence 77777888877777755443 222110 00000000 001123578888888888
Q ss_pred CEEEEEeCCCeEEEEeCCCC
Q psy9598 827 TTCALTDSYGHLLVYGLGGF 846 (1915)
Q Consensus 827 ~~Lasg~~dG~I~Iwdl~s~ 846 (1915)
..+|+-..||.|.+|.+...
T Consensus 439 ~~~avl~~d~~l~~~~~~~~ 458 (928)
T PF04762_consen 439 SRFAVLTSDGSLSIYEWDLK 458 (928)
T ss_pred CeEEEEECCCCEEEEEecCC
Confidence 88888888888888876543
|
|
| >KOG4190|consensus | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.4e-09 Score=128.09 Aligned_cols=295 Identities=15% Similarity=0.179 Sum_probs=190.1
Q ss_pred EEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECC-------CCceEEEeecCCCCeEEEEeccCccCCCcEEEEE
Q psy9598 510 LLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQ-------TLAPISVLVGHQGIITGVNFCPLEVNGFNYLAST 582 (1915)
Q Consensus 510 ~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~-------tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sg 582 (1915)
.+..+.||+..|..|+--.+.+-+++++.|.+|++|.+. +..|..++..|..+|.++.|..+ .+++ +
T Consensus 727 rL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~----lr~i--~ 800 (1034)
T KOG4190|consen 727 RLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLAD----LRSI--A 800 (1034)
T ss_pred eeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeec----ccee--e
Confidence 345678999999999877777789999999999999985 34577889999999999999873 2444 4
Q ss_pred eCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEE-eCCCeEEEEEecCCCCCceeE--Ee
Q psy9598 583 STDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATG-SGDHHVRVYKMDGVDSPLGIL--EV 659 (1915)
Q Consensus 583 s~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasg-s~Dg~I~IwDl~~~~~~~~i~--~l 659 (1915)
+.||.|.+||.--+..+...... ...+..+.|.|+-- -+...+++| +...+|+++|.+...-...+. ..
T Consensus 801 ScD~giHlWDPFigr~Laq~~da-------pk~~a~~~ikcl~n-v~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna 872 (1034)
T KOG4190|consen 801 SCDGGIHLWDPFIGRLLAQMEDA-------PKEGAGGNIKCLEN-VDRHILIAGCSAESTVKLFDARSCEWTCELKVCNA 872 (1034)
T ss_pred eccCcceeecccccchhHhhhcC-------cccCCCceeEeccc-CcchheeeeccchhhheeeecccccceeeEEeccC
Confidence 55789999997666544332221 01112234444432 233444444 678899999986543222222 22
Q ss_pred ccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEE
Q psy9598 660 EEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITA 739 (1915)
Q Consensus 660 ~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~ 739 (1915)
.+.+..+.+++..+.|+.++++-..|+|.+.|.+++..+..-..+ ......++ .|.++.|+.+
T Consensus 873 ~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpm----------------ecdllqla-apsdq~L~~s 935 (1034)
T KOG4190|consen 873 PGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPM----------------ECDLLQLA-APSDQALAQS 935 (1034)
T ss_pred CCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcc----------------cchhhhhc-CchhHHHHhh
Confidence 455677999999999999999999999999999998743211111 11111111 2556666666
Q ss_pred EecCCeEEE-EECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceE
Q psy9598 740 INFNFQIKI-WDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALF 818 (1915)
Q Consensus 740 s~~Dg~I~v-wD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~ 818 (1915)
.. |.++.| |....|......+....+..-+. .-|.-|+++.....+.||--.. ......++..+....-.|..+
T Consensus 936 al-dHslaVnWhaldgimh~q~kpppepahflq---svgpSLV~a~~Gn~lgVYad~a-~~ha~stitKiR~d~f~G~lT 1010 (1034)
T KOG4190|consen 936 AL-DHSLAVNWHALDGIMHLQDKPPPEPAHFLQ---SVGPSLVTAQNGNILGVYADSA-ELHAESTITKIRPDEFPGTLT 1010 (1034)
T ss_pred cc-cceeEeeehhcCCeeeeccCCCCcchhhhh---ccCceeEEeccCcEEEEEecch-hhhhhhhhccccccccCCccc
Confidence 66 888888 88777766655554433332221 1344577777777777774321 110011222222233446778
Q ss_pred EEEEcCCCCEEEEEeCCCeEEE
Q psy9598 819 DGKWSPDGTTCALTDSYGHLLV 840 (1915)
Q Consensus 819 ~vafSpdg~~Lasg~~dG~I~I 840 (1915)
+++.-|-..-+..|...|.|.+
T Consensus 1011 ala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 1011 ALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred eeeeccccchhhccCCCCceee
Confidence 8888887777888888888865
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=7.7e-08 Score=123.38 Aligned_cols=234 Identities=14% Similarity=0.010 Sum_probs=148.5
Q ss_pred cEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCC---CcEEEEECCCCceEEEeecCCCCeEEEEeccCccCC
Q psy9598 499 LIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVD---KTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNG 575 (1915)
Q Consensus 499 ~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~D---gtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d 575 (1915)
.|.++|...+. ...+..+...+.+.+|+|||+.|+..+.+ ..|.+|++.++.... +....+.+.+..|+|++
T Consensus 180 ~l~~~d~~g~~-~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG--- 254 (430)
T PRK00178 180 TLQRSDYDGAR-AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDG--- 254 (430)
T ss_pred EEEEECCCCCC-ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCC---
Confidence 47788876554 44555677789999999999999876643 369999999886543 33334455678999943
Q ss_pred CcEEE-EEeCCC--eEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeC-CC--eEEEEEecC
Q psy9598 576 FNYLA-STSTDG--CIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSG-DH--HVRVYKMDG 649 (1915)
Q Consensus 576 ~~~L~-sgs~Dg--tI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~-Dg--~I~IwDl~~ 649 (1915)
..|+ +.+.+| .|.+||+.++.... + ..+........|+|+|..|+..+. +| .|+++++.+
T Consensus 255 -~~la~~~~~~g~~~Iy~~d~~~~~~~~-l------------t~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~ 320 (430)
T PRK00178 255 -SKLAFVLSKDGNPEIYVMDLASRQLSR-V------------TNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNG 320 (430)
T ss_pred -CEEEEEEccCCCceEEEEECCCCCeEE-c------------ccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCC
Confidence 5555 555555 57778887764211 1 112233456789999998776654 34 466666633
Q ss_pred CCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCC-C--cEEEEEccCCceEEeeecccccCCCCccccccccccccEEE
Q psy9598 650 VDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRD-G--TALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTM 726 (1915)
Q Consensus 650 ~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~D-G--~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~ 726 (1915)
.. ...+ ...+ .......|+|+|..|+..+.+ | .|.+||+.++....+.. ......
T Consensus 321 g~-~~~l-t~~~--~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~------------------~~~~~~ 378 (430)
T PRK00178 321 GR-AERV-TFVG--NYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTD------------------TSLDES 378 (430)
T ss_pred CC-EEEe-ecCC--CCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEccC------------------CCCCCC
Confidence 22 1112 1222 233457899999998877643 3 47788888776432110 001113
Q ss_pred EEECCCCCEEEEEEecCC--eEEEEECCCCceEEEeeCCCCCeEEEEEcc
Q psy9598 727 VAWDASDRWVITAINFNF--QIKIWDAFNGDLVQVLKGHTNEVFVLESHP 774 (1915)
Q Consensus 727 va~spdg~~L~t~s~~Dg--~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp 774 (1915)
..|+|+|+.|+.++..+| .|.++++. |.....+..+.+.+...+|+|
T Consensus 379 p~~spdg~~i~~~~~~~g~~~l~~~~~~-g~~~~~l~~~~g~~~~p~ws~ 427 (430)
T PRK00178 379 PSVAPNGTMLIYATRQQGRGVLMLVSIN-GRVRLPLPTAQGEVREPSWSP 427 (430)
T ss_pred ceECCCCCEEEEEEecCCceEEEEEECC-CCceEECcCCCCCcCCCccCC
Confidence 579999999998876333 46777774 555555666666777788887
|
|
| >KOG0309|consensus | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.4e-09 Score=130.53 Aligned_cols=288 Identities=18% Similarity=0.205 Sum_probs=189.2
Q ss_pred CCcEEEEEEcCCCCEEEEEECCCcEEEEECC-CCcEEEEEeCCC--CCEEEEEEeCCC---CEEEEEeCCCcEEEEECCC
Q psy9598 476 LSAVFCVLFDKLGEVIVTGADDLLIKLWRAR-DGKLLATLRGCS--GEISDIAIDNRN---ILLAAGTVDKTIRIWNLQT 549 (1915)
Q Consensus 476 ~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~-tg~~~~~l~gH~--~~I~~Lafspdg---~~LaSgs~DgtIrVWDl~t 549 (1915)
.+++.++.++|.|+-+|+++.-|.. |-|+. .+....-|. |. -.|-.+.|++.. ..+++. ....-.||++..
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~gl~-i~dld~p~~ppr~l~-h~tpw~vad~qws~h~a~~~wiVst-s~qkaiiwnlA~ 100 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQGLY-IIDLDDPFTPPRWLH-HITPWQVADVQWSPHPAKPYWIVST-SNQKAIIWNLAK 100 (1081)
T ss_pred cCcccceeeccccchhhhhhhcCeE-EEeccCCCCCceeee-ccCcchhcceecccCCCCceeEEec-Ccchhhhhhhhc
Confidence 4678889999999999999988754 44554 344433333 32 247778888753 244444 455667899853
Q ss_pred ---CceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEE
Q psy9598 550 ---LAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSF 626 (1915)
Q Consensus 550 ---g~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~f 626 (1915)
...-..+.||+..|+.+.|+|.. ...|++++.|..|..||+++.... . ..+..-......+.|
T Consensus 101 ss~~aIef~lhghsraitd~n~~~q~---pdVlatcsvdt~vh~wd~rSp~~p--------~---ys~~~w~s~asqVkw 166 (1081)
T KOG0309|consen 101 SSSNAIEFVLHGHSRAITDINFNPQH---PDVLATCSVDTYVHAWDMRSPHRP--------F---YSTSSWRSAASQVKW 166 (1081)
T ss_pred CCccceEEEEecCccceeccccCCCC---CcceeeccccccceeeeccCCCcc--------e---eeeecccccCceeee
Confidence 34456788999999999999965 489999999999999999876321 1 111112244566788
Q ss_pred CCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCC-CCEEEEEeCCCcEEEEEccCCceEEeeeccc
Q psy9598 627 SPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHS-HLRFVSGSRDGTALIWYYKCSQWRFIRLDMN 705 (1915)
Q Consensus 627 spdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspd-g~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~ 705 (1915)
+-....+.+.+....|++||++.+..+ +..+.+|...|.++.|..- ...+++++.||+|+.||..........
T Consensus 167 nyk~p~vlasshg~~i~vwd~r~gs~p--l~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~---- 240 (1081)
T KOG0309|consen 167 NYKDPNVLASSHGNDIFVWDLRKGSTP--LCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKR---- 240 (1081)
T ss_pred cccCcchhhhccCCceEEEeccCCCcc--eEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccce----
Confidence 876555666667778999999755544 5567889999999988643 347889999999999998654311100
Q ss_pred ccCCCCccccccccccccEEEEEECCCCCEEEE--EEe--------cCCeEEEEECCC-CceEEEeeCCCCCeEEEEEcc
Q psy9598 706 TCLPHTKETSDETNKKIKVTMVAWDASDRWVIT--AIN--------FNFQIKIWDAFN-GDLVQVLKGHTNEVFVLESHP 774 (1915)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t--~s~--------~Dg~I~vwD~~t-g~~i~~l~gH~~~V~sl~~sp 774 (1915)
.......|+.-++.|-|.-.++ ..+ -+.....|+..+ .+++++|.||...|....|-.
T Consensus 241 -----------~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~ 309 (1081)
T KOG0309|consen 241 -----------TVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRK 309 (1081)
T ss_pred -----------eccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhh
Confidence 0112223333334343322111 111 023334455444 468999999999886665542
Q ss_pred C---------CCCEEEEEecCceEEEEECCCC
Q psy9598 775 F---------DSRVLLSAGHDGLIIIWDILSS 797 (1915)
Q Consensus 775 ~---------dg~~LaSgs~DG~I~IWdl~s~ 797 (1915)
. ..-.|+|-+.|.++++|-+.+.
T Consensus 310 r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~~ 341 (1081)
T KOG0309|consen 310 RKECDGDYDSRDFQLVTWSKDQTLRLWPIDSQ 341 (1081)
T ss_pred cccccCCCCccceeEEEeecCCceEeeeccHH
Confidence 1 1236999999999999999653
|
|
| >KOG2041|consensus | Back alignment and domain information |
|---|
Probab=99.00 E-value=2e-08 Score=121.92 Aligned_cols=291 Identities=15% Similarity=0.166 Sum_probs=195.5
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCc---------------eEEEeecCCCCeEEEEeccCccCCCcEEEEE
Q psy9598 518 SGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLA---------------PISVLVGHQGIITGVNFCPLEVNGFNYLAST 582 (1915)
Q Consensus 518 ~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~---------------~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sg 582 (1915)
.....|++|+....+||+|+.||.++|..+.+.. .-+++.||.+.|.-+.|+.. .+.|-+.
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~----~QKLTtS 89 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNEN----NQKLTTS 89 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccc----ccccccc
Confidence 3467899999999999999999999999886421 13467899999999999874 4888999
Q ss_pred eCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccC
Q psy9598 583 STDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEH 662 (1915)
Q Consensus 583 s~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h 662 (1915)
..+|.|.+|-+-.+.....+... ...+.|.+++|+.+|..|.....||.|.|=.+++..-... .+.
T Consensus 90 Dt~GlIiVWmlykgsW~EEMiNn----------RnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgK--eLk-- 155 (1189)
T KOG2041|consen 90 DTSGLIIVWMLYKGSWCEEMINN----------RNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGK--ELK-- 155 (1189)
T ss_pred CCCceEEEEeeecccHHHHHhhC----------cCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecch--hcc--
Confidence 99999999988776543333222 2246789999999999999999999998888754332111 111
Q ss_pred CCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEEC--------CCCC
Q psy9598 663 SDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWD--------ASDR 734 (1915)
Q Consensus 663 ~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~s--------pdg~ 734 (1915)
......+.|++|...++.+-..|.+.++|.+..-......+.... . ..........|..+.|. |+..
T Consensus 156 g~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn--~---tg~~s~~~~kia~i~w~~g~~~~v~pdrP 230 (1189)
T KOG2041|consen 156 GQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVN--G---TGIFSNFPTKIAEIEWNTGPYQPVPPDRP 230 (1189)
T ss_pred hheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEe--e---eeeecCCCccccceeeccCccccCCCCCC
Confidence 122346789999998888889999999997654221111111000 0 01111122234445553 5677
Q ss_pred EEEEEEecCCeEEEEECCCC-ceEEEeeCCCCCeEEEEEccCCCCEEEEEecCc---------eEEEEECCCCcccccee
Q psy9598 735 WVITAINFNFQIKIWDAFNG-DLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDG---------LIIIWDILSSKQRGYKW 804 (1915)
Q Consensus 735 ~L~t~s~~Dg~I~vwD~~tg-~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG---------~I~IWdl~s~~~~~~~~ 804 (1915)
.|+++-. +|.+.|....+. .++..-.| -.|..+.|++ +|.+|+.+|.|. .|.+|... |.. +.+
T Consensus 231 ~lavcy~-nGr~QiMR~eND~~Pvv~dtg--m~~vgakWnh-~G~vLAvcG~~~da~~~~d~n~v~Fysp~-G~i--~gt 303 (1189)
T KOG2041|consen 231 RLAVCYA-NGRMQIMRSENDPEPVVVDTG--MKIVGAKWNH-NGAVLAVCGNDSDADEPTDSNKVHFYSPY-GHI--VGT 303 (1189)
T ss_pred EEEEEEc-CceehhhhhcCCCCCeEEecc--cEeecceecC-CCcEEEEccCcccccCccccceEEEeccc-hhh--eEE
Confidence 7888877 888888755443 33322223 4588899999 999999998753 34444432 222 333
Q ss_pred eeeeecCCCCcceEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q psy9598 805 FHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLG 844 (1915)
Q Consensus 805 ~~~~~~~~~~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl~ 844 (1915)
+. .....|++++|-..|-.+|.+-. +.|++=++.
T Consensus 304 lk-----vpg~~It~lsWEg~gLriA~Avd-sfiyfanIR 337 (1189)
T KOG2041|consen 304 LK-----VPGSCITGLSWEGTGLRIAIAVD-SFIYFANIR 337 (1189)
T ss_pred Ee-----cCCceeeeeEEcCCceEEEEEec-ceEEEEeec
Confidence 33 23357899999988888877654 567666654
|
|
| >KOG1064|consensus | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.2e-09 Score=140.23 Aligned_cols=196 Identities=14% Similarity=0.199 Sum_probs=156.5
Q ss_pred ecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEe-CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCC
Q psy9598 472 NLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLR-GCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTL 550 (1915)
Q Consensus 472 l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~-gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg 550 (1915)
+..|-..|.|+.-+|...+.+||+.||.|++|....+..+..++ +..+.|+.+.|+.+|+.+..+..||.+.+|.+. .
T Consensus 2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-p 2282 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-P 2282 (2439)
T ss_pred eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-C
Confidence 44567889999999999999999999999999999998887775 234889999999999999999999999999987 6
Q ss_pred ceEEEeecCCCCeEEEEeccCccCCCcEEEEEe---CCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEEC
Q psy9598 551 APISVLVGHQGIITGVNFCPLEVNGFNYLASTS---TDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFS 627 (1915)
Q Consensus 551 ~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs---~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs 627 (1915)
++....+.|......+.|.. ..+++++ .++.+.+||..-...... . ...|.+.++|+++.
T Consensus 2283 k~~~s~qchnk~~~Df~Fi~------s~~~tag~s~d~~n~~lwDtl~~~~~s~---------v--~~~H~~gaT~l~~~ 2345 (2439)
T KOG1064|consen 2283 KPYTSWQCHNKALSDFRFIG------SLLATAGRSSDNRNVCLWDTLLPPMNSL---------V--HTCHDGGATVLAYA 2345 (2439)
T ss_pred cceeccccCCccccceeeee------hhhhccccCCCCCcccchhcccCcccce---------e--eeecCCCceEEEEc
Confidence 77788889999999999975 4666654 568999999643321111 1 14678899999999
Q ss_pred CCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceE
Q psy9598 628 PGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWR 698 (1915)
Q Consensus 628 pdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~ 698 (1915)
|...+|++||.+|.|+|||++. ...++.+.. +. ...+|++|+..|.|+||++.....+
T Consensus 2346 P~~qllisggr~G~v~l~D~rq---rql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ll 2403 (2439)
T KOG1064|consen 2346 PKHQLLISGGRKGEVCLFDIRQ---RQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFGLL 2403 (2439)
T ss_pred CcceEEEecCCcCcEEEeehHH---HHHHHHhhh---------hh-hhheeeccCcccceEEEEccccchh
Confidence 9999999999999999999942 222222222 33 5668999999999999998876543
|
|
| >KOG4547|consensus | Back alignment and domain information |
|---|
Probab=98.98 E-value=4.5e-08 Score=119.25 Aligned_cols=189 Identities=14% Similarity=0.184 Sum_probs=149.8
Q ss_pred cCCCCEEEEEECCCcEEEEECCCCcEEEEEeC---CCCCEEEEEEe--------------------CCCCEEEEEeCCCc
Q psy9598 485 DKLGEVIVTGADDLLIKLWRARDGKLLATLRG---CSGEISDIAID--------------------NRNILLAAGTVDKT 541 (1915)
Q Consensus 485 spdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~g---H~~~I~~Lafs--------------------pdg~~LaSgs~Dgt 541 (1915)
.|-+.++|..+.||.++||++.++++...|.. -++..+++.|. .+..+|+-|...|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 35578999999999999999999988776642 24455666662 23457888889999
Q ss_pred EEEEECCCCceEEEee--cCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCC
Q psy9598 542 IRIWNLQTLAPISVLV--GHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNA 619 (1915)
Q Consensus 542 IrVWDl~tg~~~~~l~--~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (1915)
|.+|++..|+....+. +|.+.|+++.++. +...|.+++.|+.+..|+......+.... ....
T Consensus 82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~----~~~ciyS~~ad~~v~~~~~~~~~~~~~~~------------~~~~ 145 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQ----RLGCIYSVGADLKVVYILEKEKVIIRIWK------------EQKP 145 (541)
T ss_pred EEEEEecCCeEEEEEecCCCCCcceeeeccc----ccCceEecCCceeEEEEecccceeeeeec------------cCCC
Confidence 9999999999888776 5999999999987 44899999999999999988775433332 2345
Q ss_pred ceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCC-----CCEEEEE-eCCCcEEEEEcc
Q psy9598 620 HILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHS-----HLRFVSG-SRDGTALIWYYK 693 (1915)
Q Consensus 620 ~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspd-----g~~L~sg-s~DG~I~IWDl~ 693 (1915)
.+.+++++|||..|++|+. .|++||+ .....+..+.||.++|.+++|.-. |.+|+++ ..+..|.+|-+.
T Consensus 146 ~~~sl~is~D~~~l~~as~--~ik~~~~---~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~ 220 (541)
T KOG4547|consen 146 LVSSLCISPDGKILLTASR--QIKVLDI---ETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVE 220 (541)
T ss_pred ccceEEEcCCCCEEEeccc--eEEEEEc---cCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEE
Confidence 6889999999999998875 8999999 566788899999999999999876 6666554 456668888654
Q ss_pred C
Q psy9598 694 C 694 (1915)
Q Consensus 694 ~ 694 (1915)
.
T Consensus 221 ~ 221 (541)
T KOG4547|consen 221 K 221 (541)
T ss_pred c
Confidence 3
|
|
| >KOG1064|consensus | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.1e-09 Score=140.36 Aligned_cols=196 Identities=19% Similarity=0.291 Sum_probs=148.5
Q ss_pred CceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceE
Q psy9598 619 AHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWR 698 (1915)
Q Consensus 619 ~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~ 698 (1915)
..|.++.-+|...+.++|+.||.|++|.... ..........|. ..|+.+.|+.+|+.+..+..||.+.+|.+...-
T Consensus 2209 ~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~-~~~v~~~rt~g~-s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk~-- 2284 (2439)
T KOG1064|consen 2209 ENVRRMTSHPSDPYYLTGSQDGSVRMFEWGH-GQQVVCFRTAGN-SRVTRSRFNHQGNKFGIVDGDGDLSLWQASPKP-- 2284 (2439)
T ss_pred CceeeecCCCCCceEEecCCCceEEEEeccC-CCeEEEeeccCc-chhhhhhhcccCCceeeeccCCceeecccCCcc--
Confidence 4678888889888999999999999999833 222222223333 889999999999999999999999999765221
Q ss_pred EeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEE--ecCCeEEEEECCC---CceEEEeeCCCCCeEEEEEc
Q psy9598 699 FIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAI--NFNFQIKIWDAFN---GDLVQVLKGHTNEVFVLESH 773 (1915)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s--~~Dg~I~vwD~~t---g~~i~~l~gH~~~V~sl~~s 773 (1915)
......|....+.+.|-. ..+++++ ..++.+.+||..- ..+++ ..|.+.++++++.
T Consensus 2285 ---------------~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~ 2345 (2439)
T KOG1064|consen 2285 ---------------YTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYA 2345 (2439)
T ss_pred ---------------eeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEc
Confidence 112223444455555544 4455544 2477899999642 23444 7899999999999
Q ss_pred cCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcccccCC
Q psy9598 774 PFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGGFKRPQNIP 853 (1915)
Q Consensus 774 p~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl~s~~~~~~l~ 853 (1915)
| ...+|+|||.+|.|+|||+...+. ...+. . +. ...+|++|+..|.|.||++.....+.++|
T Consensus 2346 P-~~qllisggr~G~v~l~D~rqrql--~h~~~----------~----~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2346 P-KHQLLISGGRKGEVCLFDIRQRQL--RHTFQ----------A----LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred C-cceEEEecCCcCcEEEeehHHHHH--HHHhh----------h----hh-hhheeeccCcccceEEEEccccchhhcCc
Confidence 9 889999999999999999988777 44444 1 44 56789999999999999999998888888
Q ss_pred Cc
Q psy9598 854 RE 855 (1915)
Q Consensus 854 ~~ 855 (1915)
.+
T Consensus 2408 ~e 2409 (2439)
T KOG1064|consen 2408 SE 2409 (2439)
T ss_pred hh
Confidence 73
|
|
| >KOG4190|consensus | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.5e-09 Score=127.82 Aligned_cols=287 Identities=12% Similarity=0.105 Sum_probs=184.4
Q ss_pred EEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECC-------CCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcE
Q psy9598 470 YVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRAR-------DGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTI 542 (1915)
Q Consensus 470 ~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~-------tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtI 542 (1915)
..+.||...|..++--.+.+-+++++.|.+|++|++. |..+..++..|..+|.++.|-.+.++++++ ||-|
T Consensus 729 ~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~gi 806 (1034)
T KOG4190|consen 729 CNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGI 806 (1034)
T ss_pred ecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcc
Confidence 4678999999999887788889999999999999975 335788899999999999999998888764 7899
Q ss_pred EEEECCCCceEEEeec--CCCCeEEEEeccCccCCCcEEEEE-eCCCeEEEEecccCccccceeccCccccccccCCCCC
Q psy9598 543 RIWNLQTLAPISVLVG--HQGIITGVNFCPLEVNGFNYLAST-STDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNA 619 (1915)
Q Consensus 543 rVWDl~tg~~~~~l~~--h~~~V~sl~fsp~~~~d~~~L~sg-s~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (1915)
.+||.--|.++..+.. ..+.+..|...+.- +..+++.| +...+|+++|.+............ ..+.++
T Consensus 807 HlWDPFigr~Laq~~dapk~~a~~~ikcl~nv--~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcn-------a~~Pna 877 (1034)
T KOG4190|consen 807 HLWDPFIGRLLAQMEDAPKEGAGGNIKCLENV--DRHILIAGCSAESTVKLFDARSCEWTCELKVCN-------APGPNA 877 (1034)
T ss_pred eeecccccchhHhhhcCcccCCCceeEecccC--cchheeeeccchhhheeeecccccceeeEEecc-------CCCCch
Confidence 9999887777663321 22333334333421 23455554 778999999998876544433321 112346
Q ss_pred ceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEE-EEccCCceE
Q psy9598 620 HILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALI-WYYKCSQWR 698 (1915)
Q Consensus 620 ~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~I-WDl~~~~~~ 698 (1915)
.+.|+++.+.|+++++|-.+|+|.+.|.+++ ..+..+.........++ .|....|+....|.++.+ |-.-.+...
T Consensus 878 ~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G---~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldgimh 953 (1034)
T KOG4190|consen 878 LTRAIAVADKGNKLAAALSNGCIAILDARNG---KVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMH 953 (1034)
T ss_pred heeEEEeccCcchhhHHhcCCcEEEEecCCC---ceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCCeee
Confidence 7899999999999999999999999998543 23333333322233332 356667888888888888 865444322
Q ss_pred EeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCC----CceEEEee--CCCCCeEEEEE
Q psy9598 699 FIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFN----GDLVQVLK--GHTNEVFVLES 772 (1915)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~t----g~~i~~l~--gH~~~V~sl~~ 772 (1915)
.. ...+..+. |. +-.-|..|+++.. ...+.||--.. ...+..+. ...+..++++.
T Consensus 954 ~q-----~kpppepa------hf-------lqsvgpSLV~a~~-Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~ 1014 (1034)
T KOG4190|consen 954 LQ-----DKPPPEPA------HF-------LQSVGPSLVTAQN-GNILGVYADSAELHAESTITKIRPDEFPGTLTALAP 1014 (1034)
T ss_pred ec-----cCCCCcch------hh-------hhccCceeEEecc-CcEEEEEecchhhhhhhhhccccccccCCccceeee
Confidence 11 01111000 00 0112445555555 55566664211 11122222 22456778888
Q ss_pred ccCCCCEEEEEecCceEEE
Q psy9598 773 HPFDSRVLLSAGHDGLIII 791 (1915)
Q Consensus 773 sp~dg~~LaSgs~DG~I~I 791 (1915)
-| -..-++.|...|.|.+
T Consensus 1015 LP-LN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 1015 LP-LNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred cc-ccchhhccCCCCceee
Confidence 88 4444566878888765
|
|
| >KOG2314|consensus | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.5e-07 Score=112.58 Aligned_cols=293 Identities=14% Similarity=0.154 Sum_probs=178.6
Q ss_pred eEEEecccCCceeeeEEecCCCCcEEEEEEcCCCCEEEEEEC-----------CCcEEEEECCCCcEEEEEeCC--CCCE
Q psy9598 455 SLMISSHKYSNLRQHYVNLGHLSAVFCVLFDKLGEVIVTGAD-----------DLLIKLWRARDGKLLATLRGC--SGEI 521 (1915)
Q Consensus 455 ~~~i~~~~~~~~~~~~~l~gH~~~V~~vafspdg~~LaTGs~-----------Dg~I~IWd~~tg~~~~~l~gH--~~~I 521 (1915)
.+.+|+. ..+...+++ .| -.|.-+.|||+.+||+|-|. ...|+|||+.||.+.+.|... ...+
T Consensus 232 GI~lWGG--~~f~r~~RF-~H-p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~ 307 (698)
T KOG2314|consen 232 GIALWGG--ESFDRIQRF-YH-PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLK 307 (698)
T ss_pred ceeeecC--ccHHHHHhc-cC-CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccc
Confidence 4556643 233333444 35 45888999999999999764 147999999999999888652 2233
Q ss_pred E-EEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeC-----CCeEEEEeccc
Q psy9598 522 S-DIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTST-----DGCIGFWKYKL 595 (1915)
Q Consensus 522 ~-~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~-----DgtI~iWDl~~ 595 (1915)
. -..||.|++++|--.. .+|.|++..+..++-.-.-....|....|+|.+ ++||.=+- -..+.+-.+-+
T Consensus 308 WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~----~llAYwtpe~~~~parvtL~evPs 382 (698)
T KOG2314|consen 308 WPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTS----NLLAYWTPETNNIPARVTLMEVPS 382 (698)
T ss_pred cceEEeccCCceeEEecc-ceEEEEecCceeeecccccCCccccCcccCCCc----ceEEEEcccccCCcceEEEEecCc
Confidence 3 3589999999998776 469999987644332222234678888999943 44443221 12333333333
Q ss_pred CccccceeccCccccccccCCCCCceEEEEECCCCcEEEEE----------eCCCeEEEEEecCCCCCceeEEeccCCCC
Q psy9598 596 DIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATG----------SGDHHVRVYKMDGVDSPLGILEVEEHSDK 665 (1915)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasg----------s~Dg~I~IwDl~~~~~~~~i~~l~~h~~~ 665 (1915)
++.+.+..+. +..=..+-|-.+|.+|+.- |.-..+-|+.++....+.... .....
T Consensus 383 ~~~iRt~nlf------------nVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~v---elke~ 447 (698)
T KOG2314|consen 383 KREIRTKNLF------------NVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVV---ELKES 447 (698)
T ss_pred cceeeeccce------------eeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceee---ecchh
Confidence 3322222211 1111234455566666542 222245667665444443333 24567
Q ss_pred eeEEEEcCCCCEEEEEeCC---CcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEe-
Q psy9598 666 VDSIQWSHSHLRFVSGSRD---GTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAIN- 741 (1915)
Q Consensus 666 V~sl~fspdg~~L~sgs~D---G~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~- 741 (1915)
|..++|-|.|+.|++-+.. .++.+|-+.+.... ..... .-.....+.|.|+|.|++++++.-
T Consensus 448 vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~------------~~lVk--~~dk~~~N~vfwsPkG~fvvva~l~ 513 (698)
T KOG2314|consen 448 VIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKK------------PSLVK--ELDKKFANTVFWSPKGRFVVVAALV 513 (698)
T ss_pred eeeeeeccCCCeEEEEEccccccceeEEEeecCCCc------------hhhhh--hhcccccceEEEcCCCcEEEEEEec
Confidence 8999999999988765543 56778766632100 00111 112245678999999999988764
Q ss_pred -cCCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEEecC
Q psy9598 742 -FNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHD 786 (1915)
Q Consensus 742 -~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~D 786 (1915)
..|.+.++|+....+..+-.......+.+.|.| .|++++|++.-
T Consensus 514 s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDP-tGRYvvT~ss~ 558 (698)
T KOG2314|consen 514 SRRGDLEFYDTDYADLKDTASPEHFAATEVEWDP-TGRYVVTSSSS 558 (698)
T ss_pred ccccceEEEecchhhhhhccCccccccccceECC-CCCEEEEeeeh
Confidence 278899999875333333222223467889999 99999999854
|
|
| >cd05494 Bromodomain_1 Bromodomain; uncharacterized subfamily | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.6e-10 Score=115.35 Aligned_cols=78 Identities=19% Similarity=0.166 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCCC--CCCCCccccccCccchhhHHhhhcCC-------CCCCHHHHHHHHHHHHHHh
Q psy9598 1534 KNECREVLETLWVCPDSEPFRKPVDK--LDHPDYDKIVIAPMDLGTIREELRGD-------NYESPIDFVKDVKRVFHNS 1604 (1915)
Q Consensus 1534 ~~~~~~ll~~l~~~~~s~~F~~pv~~--~~~pdY~~iIk~Pmdl~tI~~kl~~~-------~Y~s~~ef~~Dv~lif~Na 1604 (1915)
...|.++|..++.++.++||..||++ .++||||++||+||||+||+++|..+ .|..-..+.+++..++.||
T Consensus 5 ~~~~l~~l~~~~~~~~~~pF~~PVd~~~~~~pdY~~iIK~PMDL~ti~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (114)
T cd05494 5 LERVLRELKRHRRNEDAWPFLEPVNPPRRGAPDYRDVIKRPMSFGTKVNNIVETGARDLEDLQIVQEDPADKQIDDEGRR 84 (114)
T ss_pred HHHHHHHHHHhhhCCCCCCcCCCCCchhcCCCChhhhcCCCCChHHHHHHHHcccccccccccccccccccccccccccc
Confidence 35577777777778899999999998 89999999999999999999999987 4555566777888888888
Q ss_pred hhhcCCC
Q psy9598 1605 RNYNQNK 1611 (1915)
Q Consensus 1605 ~~yN~~~ 1611 (1915)
..+|.-.
T Consensus 85 ~~~~~~~ 91 (114)
T cd05494 85 SPSNIYA 91 (114)
T ss_pred Ccccccc
Confidence 8877643
|
Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine. |
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.2e-08 Score=113.71 Aligned_cols=291 Identities=17% Similarity=0.215 Sum_probs=181.8
Q ss_pred CCcEEEEEEcCCCCEEEEEECCCcEEEEECCCC-----cEEEEEeCCCC------------CEEEEEEeCCCC--EEEEE
Q psy9598 476 LSAVFCVLFDKLGEVIVTGADDLLIKLWRARDG-----KLLATLRGCSG------------EISDIAIDNRNI--LLAAG 536 (1915)
Q Consensus 476 ~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg-----~~~~~l~gH~~------------~I~~Lafspdg~--~LaSg 536 (1915)
..-|++|.|...|.||+||...|.|.+|.-... +....|.+|.. .|..|.|..++. .++..
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 467999999999999999999999999975432 23344667743 578888876543 45555
Q ss_pred eCCCcEEEEECCCCceEEEeec---------CCCCeEEEEeccCccCCCcEEE-EEe-CCCeEEEEecccCccccceecc
Q psy9598 537 TVDKTIRIWNLQTLAPISVLVG---------HQGIITGVNFCPLEVNGFNYLA-STS-TDGCIGFWKYKLDIDISKTVFH 605 (1915)
Q Consensus 537 s~DgtIrVWDl~tg~~~~~l~~---------h~~~V~sl~fsp~~~~d~~~L~-sgs-~DgtI~iWDl~~~~~~~~~~~~ 605 (1915)
+.|.+|++|.+.......+... ..+++++.. .+++ -.+ .|..|...-
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~---------~l~lprls~hd~iiaa~p------------- 163 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTK---------ELLLPRLSEHDEIIAAKP------------- 163 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHH---------HhhcccccccceEEEecc-------------
Confidence 6799999999865322111110 011111110 0000 000 111111110
Q ss_pred CccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCC-----CCeeEEEEcCCC-CEEE
Q psy9598 606 EPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHS-----DKVDSIQWSHSH-LRFV 679 (1915)
Q Consensus 606 ~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~-----~~V~sl~fspdg-~~L~ 679 (1915)
. ......|...|.+++|+.+..+++++ .|-.|.+|++.-......+..+..|. .-|++..|+|.. ..|.
T Consensus 164 --~--rvyaNaH~yhiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fm 238 (460)
T COG5170 164 --C--RVYANAHPYHINSISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFM 238 (460)
T ss_pred --c--eeccccceeEeeeeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEE
Confidence 0 00113566779999999998888776 56789999997655555666666664 357888899864 4677
Q ss_pred EEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCC-CceEE
Q psy9598 680 SGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFN-GDLVQ 758 (1915)
Q Consensus 680 sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~t-g~~i~ 758 (1915)
-++..|.|++-|++..........+...................|..+.|+++|++|++-.. .+|+|||+.. ..++.
T Consensus 239 YSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy--ltvkiwDvnm~k~pik 316 (460)
T COG5170 239 YSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY--LTVKIWDVNMAKNPIK 316 (460)
T ss_pred EecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc--ceEEEEecccccCCce
Confidence 77889999999998544211000000000000111122334467888999999999988764 6899999975 45777
Q ss_pred EeeCCCC------------Ce---EEEEEccCCCCEEEEEecCceEEEEECCC
Q psy9598 759 VLKGHTN------------EV---FVLESHPFDSRVLLSAGHDGLIIIWDILS 796 (1915)
Q Consensus 759 ~l~gH~~------------~V---~sl~~sp~dg~~LaSgs~DG~I~IWdl~s 796 (1915)
++.-|.. .| ..+.|+. +...+++|+.....-||-+.+
T Consensus 317 Ti~~h~~l~~~l~d~YEnDaifdkFeisfSg-d~~~v~sgsy~NNfgiyp~~s 368 (460)
T COG5170 317 TIPMHCDLMDELNDVYENDAIFDKFEISFSG-DDKHVLSGSYSNNFGIYPTDS 368 (460)
T ss_pred eechHHHHHHHHHhhhhccceeeeEEEEecC-Ccccccccccccceeeecccc
Confidence 7765532 23 4567887 778888998888877776443
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.3e-07 Score=117.88 Aligned_cols=246 Identities=15% Similarity=0.088 Sum_probs=143.9
Q ss_pred CcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCc-EEEEEeCCC--eEEEEecccCccccceeccCccccccccCC
Q psy9598 540 KTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFN-YLASTSTDG--CIGFWKYKLDIDISKTVFHEPVMFNERIRP 616 (1915)
Q Consensus 540 gtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~-~L~sgs~Dg--tI~iWDl~~~~~~~~~~~~~~~~~~~~~~~ 616 (1915)
+.|.+.|...+... .+..+...+.+-.|+|++ ... ++++...+| .|.+.++.++.......+
T Consensus 165 ~~l~~~d~dG~~~~-~lt~~~~~~~sP~wSPDG--~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~------------ 229 (428)
T PRK01029 165 GELWSVDYDGQNLR-PLTQEHSLSITPTWMHIG--SGFPYLYVSYKLGVPKIFLGSLENPAGKKILAL------------ 229 (428)
T ss_pred ceEEEEcCCCCCce-EcccCCCCcccceEccCC--CceEEEEEEccCCCceEEEEECCCCCceEeecC------------
Confidence 36777787655543 344455566788999964 111 233444444 466667776643211111
Q ss_pred CCCceEEEEECCCCcEEEEEeC-CC----eEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEe-CCCcEEEE
Q psy9598 617 GNAHILCSSFSPGGLFLATGSG-DH----HVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGS-RDGTALIW 690 (1915)
Q Consensus 617 ~~~~V~~l~fspdg~~Lasgs~-Dg----~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs-~DG~I~IW 690 (1915)
.+.....+|||||+.|+..+. +| .+.+|++.............++.+.....+|+|+|..|+..+ .+|...||
T Consensus 230 -~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly 308 (428)
T PRK01029 230 -QGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIY 308 (428)
T ss_pred -CCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEE
Confidence 133456799999988886553 22 344466643211111112222334456789999999877665 56766666
Q ss_pred EccC--CceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecC--CeEEEEECCCCceEEEeeCCCCC
Q psy9598 691 YYKC--SQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFN--FQIKIWDAFNGDLVQVLKGHTNE 766 (1915)
Q Consensus 691 Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~D--g~I~vwD~~tg~~i~~l~gH~~~ 766 (1915)
.+.. .... ..........+...+|+|||+.|+.++..+ ..|.+||+.+++.... ......
T Consensus 309 ~~~~~~~g~~---------------~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~L-t~~~~~ 372 (428)
T PRK01029 309 IMQIDPEGQS---------------PRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQL-TTSPEN 372 (428)
T ss_pred EEECcccccc---------------eEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEc-cCCCCC
Confidence 4421 1100 000111223456789999999998776523 4799999988876543 333445
Q ss_pred eEEEEEccCCCCEEEEEec---CceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCC
Q psy9598 767 VFVLESHPFDSRVLLSAGH---DGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDG 826 (1915)
Q Consensus 767 V~sl~~sp~dg~~LaSgs~---DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg 826 (1915)
+....|+| +++.|+..+. .+.|++||+.++.. .... ...+.+...+|+|-.
T Consensus 373 ~~~p~wSp-DG~~L~f~~~~~g~~~L~~vdl~~g~~--~~Lt------~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 373 KESPSWAI-DSLHLVYSAGNSNESELYLISLITKKT--RKIV------IGSGEKRFPSWGAFP 426 (428)
T ss_pred ccceEECC-CCCEEEEEECCCCCceEEEEECCCCCE--EEee------cCCCcccCceecCCC
Confidence 67889999 8887764432 35788999987765 2211 133456677888753
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.8e-07 Score=117.16 Aligned_cols=244 Identities=12% Similarity=-0.010 Sum_probs=146.7
Q ss_pred CcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEE---EEEeCC--CcEEEEECCCCceEEEeecCCCCeEEEEeccCc
Q psy9598 498 LLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILL---AAGTVD--KTIRIWNLQTLAPISVLVGHQGIITGVNFCPLE 572 (1915)
Q Consensus 498 g~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~L---aSgs~D--gtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~ 572 (1915)
+.|.+.|...+... .+..+...+.+-+|+|||+.+ ++...+ ..|.+.++.+|..... ....+.....+|+|+
T Consensus 165 ~~l~~~d~dG~~~~-~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~l-t~~~g~~~~p~wSPD- 241 (428)
T PRK01029 165 GELWSVDYDGQNLR-PLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKI-LALQGNQLMPTFSPR- 241 (428)
T ss_pred ceEEEEcCCCCCce-EcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEe-ecCCCCccceEECCC-
Confidence 36777777555443 344455667788999999742 244333 3588889887765433 334455567899995
Q ss_pred cCCCcEEEEEeC-CC----eEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEe-CCCeEEEEE
Q psy9598 573 VNGFNYLASTST-DG----CIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGS-GDHHVRVYK 646 (1915)
Q Consensus 573 ~~d~~~L~sgs~-Dg----tI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs-~Dg~I~IwD 646 (1915)
++.|+..+. +| .+.+|++..+..-..... ...........+|+|||+.|+..+ .+|...||.
T Consensus 242 ---G~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~l---------t~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~ 309 (428)
T PRK01029 242 ---KKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRL---------LNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYI 309 (428)
T ss_pred ---CCEEEEEECCCCCcceeEEEeecccCCCCcceEe---------ecCCCCCcCCeEECCCCCEEEEEECCCCCceEEE
Confidence 466665442 23 344466654311000000 001112335679999999877665 466656665
Q ss_pred ecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCC---CcEEEEEccCCceEEeeecccccCCCCcccccccccccc
Q psy9598 647 MDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRD---GTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIK 723 (1915)
Q Consensus 647 l~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~D---G~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 723 (1915)
+...........+..+...+....|+|+|+.|+..+.+ ..|.+||+.+++...+.. ....
T Consensus 310 ~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~-----------------~~~~ 372 (428)
T PRK01029 310 MQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTT-----------------SPEN 372 (428)
T ss_pred EECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccC-----------------CCCC
Confidence 42111111223344455667888999999988876543 368899998877443210 1123
Q ss_pred EEEEEECCCCCEEEEEEec--CCeEEEEECCCCceEEEeeCCCCCeEEEEEcc
Q psy9598 724 VTMVAWDASDRWVITAINF--NFQIKIWDAFNGDLVQVLKGHTNEVFVLESHP 774 (1915)
Q Consensus 724 V~~va~spdg~~L~t~s~~--Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp 774 (1915)
+....|+|||+.|+..... ...|++||+.+++..... ...+.+...+|+|
T Consensus 373 ~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt-~~~g~~~~p~Ws~ 424 (428)
T PRK01029 373 KESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIV-IGSGEKRFPSWGA 424 (428)
T ss_pred ccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee-cCCCcccCceecC
Confidence 4568899999998865532 357889999877654444 3445567788887
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.2e-07 Score=121.33 Aligned_cols=213 Identities=15% Similarity=0.094 Sum_probs=136.6
Q ss_pred CcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCC---CeEEEEecccCccccceeccCccccccccCC
Q psy9598 540 KTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTD---GCIGFWKYKLDIDISKTVFHEPVMFNERIRP 616 (1915)
Q Consensus 540 gtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~D---gtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~ 616 (1915)
..|.++|...+. ...+..+...+.+..|+|+ +++|+.++.. ..|.+||+.++...... .
T Consensus 170 ~~l~~~d~~g~~-~~~l~~~~~~~~~p~~Spd----g~~la~~~~~~~~~~i~v~d~~~g~~~~~~-------------~ 231 (417)
T TIGR02800 170 YELQVADYDGAN-PQTITRSREPILSPAWSPD----GQKLAYVSFESGKPEIYVQDLATGQREKVA-------------S 231 (417)
T ss_pred ceEEEEcCCCCC-CEEeecCCCceecccCCCC----CCEEEEEEcCCCCcEEEEEECCCCCEEEee-------------c
Confidence 368888886443 4555567778899999994 4777776644 47999999876421111 1
Q ss_pred CCCceEEEEECCCCcEEEE-EeCCC--eEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeC-CC--cEEEE
Q psy9598 617 GNAHILCSSFSPGGLFLAT-GSGDH--HVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSR-DG--TALIW 690 (1915)
Q Consensus 617 ~~~~V~~l~fspdg~~Las-gs~Dg--~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~-DG--~I~IW 690 (1915)
+.+.+.+++|+|+|+.|+. .+.++ .|++|++.+.. ...+..+.......+|+++|..|+.++. +| .|.+|
T Consensus 232 ~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~----~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~ 307 (417)
T TIGR02800 232 FPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQ----LTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMM 307 (417)
T ss_pred CCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCC----EEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEE
Confidence 1244567899999987764 44444 58888874321 2334445555567789999998876654 34 46677
Q ss_pred EccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCC---eEEEEECCCCceEEEeeCCCCCe
Q psy9598 691 YYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNF---QIKIWDAFNGDLVQVLKGHTNEV 767 (1915)
Q Consensus 691 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg---~I~vwD~~tg~~i~~l~gH~~~V 767 (1915)
++.++....+. .....+..++|+|+|.+|+.+.. ++ .|.+||+.++... .+..+ ...
T Consensus 308 d~~~~~~~~l~-----------------~~~~~~~~~~~spdg~~i~~~~~-~~~~~~i~~~d~~~~~~~-~l~~~-~~~ 367 (417)
T TIGR02800 308 DADGGEVRRLT-----------------FRGGYNASPSWSPDGDLIAFVHR-EGGGFNIAVMDLDGGGER-VLTDT-GLD 367 (417)
T ss_pred ECCCCCEEEee-----------------cCCCCccCeEECCCCCEEEEEEc-cCCceEEEEEeCCCCCeE-EccCC-CCC
Confidence 77665532211 12234566889999999998876 54 7999999876543 33322 224
Q ss_pred EEEEEccCCCCEEEEEecCc---eEEEEECC
Q psy9598 768 FVLESHPFDSRVLLSAGHDG---LIIIWDIL 795 (1915)
Q Consensus 768 ~sl~~sp~dg~~LaSgs~DG---~I~IWdl~ 795 (1915)
....|+| ++.+|+.++.++ .+.+.+..
T Consensus 368 ~~p~~sp-dg~~l~~~~~~~~~~~l~~~~~~ 397 (417)
T TIGR02800 368 ESPSFAP-NGRMILYATTRGGRGVLGLVSTD 397 (417)
T ss_pred CCceECC-CCCEEEEEEeCCCcEEEEEEECC
Confidence 5568999 888777776654 34555543
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.1e-06 Score=106.56 Aligned_cols=275 Identities=13% Similarity=0.048 Sum_probs=163.1
Q ss_pred CcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEe----------CCCeEEEEecccCccccceeccCccc
Q psy9598 540 KTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTS----------TDGCIGFWKYKLDIDISKTVFHEPVM 609 (1915)
Q Consensus 540 gtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs----------~DgtI~iWDl~~~~~~~~~~~~~~~~ 609 (1915)
++|.|.|..+++.+..+..-..+- .+ ++|++ ..|++++ .+..|.+||..+...+..+.......
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg----~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~ 100 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDG----SFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPR 100 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCc-ee-ECCCC----CEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCch
Confidence 889999999999998887544333 24 88843 5555554 47899999999987766555431100
Q ss_pred cccccCCCCCceEEEEECCCCcEEEEEe-C-CCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcE
Q psy9598 610 FNERIRPGNAHILCSSFSPGGLFLATGS-G-DHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTA 687 (1915)
Q Consensus 610 ~~~~~~~~~~~V~~l~fspdg~~Lasgs-~-Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I 687 (1915)
+. .......++++|+|++|++.. . +..|.++|+.. ...+..+.- .+...-+..+.+. +.+-+.||..
T Consensus 101 ~~-----~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~---~kvv~ei~v-p~~~~vy~t~e~~--~~~~~~Dg~~ 169 (352)
T TIGR02658 101 FL-----VGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEG---KAFVRMMDV-PDCYHIFPTANDT--FFMHCRDGSL 169 (352)
T ss_pred hh-----ccCccceEEECCCCCEEEEecCCCCCEEEEEECCC---CcEEEEEeC-CCCcEEEEecCCc--cEEEeecCce
Confidence 00 113345789999999988766 3 68999999943 233333322 1111122222221 1223345554
Q ss_pred EEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECC-CCCEEEEEEecCCeEEEEECCC-----CceEEEee
Q psy9598 688 LIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDA-SDRWVITAINFNFQIKIWDAFN-----GDLVQVLK 761 (1915)
Q Consensus 688 ~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~sp-dg~~L~t~s~~Dg~I~vwD~~t-----g~~i~~l~ 761 (1915)
....+.......... ....... ...-...+ .|++ +|.+++++. .|.|.+.|+.. ...+..+.
T Consensus 170 ~~v~~d~~g~~~~~~--~~vf~~~----~~~v~~rP----~~~~~dg~~~~vs~--eG~V~~id~~~~~~~~~~~~~~~~ 237 (352)
T TIGR02658 170 AKVGYGTKGNPKIKP--TEVFHPE----DEYLINHP----AYSNKSGRLVWPTY--TGKIFQIDLSSGDAKFLPAIEAFT 237 (352)
T ss_pred EEEEecCCCceEEee--eeeecCC----ccccccCC----ceEcCCCcEEEEec--CCeEEEEecCCCcceecceeeecc
Confidence 443333221111000 0000000 00000111 3345 788887776 49999999543 33333332
Q ss_pred C-------CCCCeEEEEEccCCCCEEEEEec----------CceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcC
Q psy9598 762 G-------HTNEVFVLESHPFDSRVLLSAGH----------DGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSP 824 (1915)
Q Consensus 762 g-------H~~~V~sl~~sp~dg~~LaSgs~----------DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSp 824 (1915)
. ..+.+.-+++++ +++.|+.+.. .+.|.++|..+++. +..+. ....+..++++|
T Consensus 238 ~~~~~~~wrP~g~q~ia~~~-dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kv--i~~i~------vG~~~~~iavS~ 308 (352)
T TIGR02658 238 EAEKADGWRPGGWQQVAYHR-ARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKR--LRKIE------LGHEIDSINVSQ 308 (352)
T ss_pred ccccccccCCCcceeEEEcC-CCCEEEEEecCCccccccCCCCEEEEEECCCCeE--EEEEe------CCCceeeEEECC
Confidence 1 223444599999 7666666421 25799999998887 55554 224688999999
Q ss_pred CCC-EEEEEe-CCCeEEEEeCCCCcccccC
Q psy9598 825 DGT-TCALTD-SYGHLLVYGLGGFKRPQNI 852 (1915)
Q Consensus 825 dg~-~Lasg~-~dG~I~Iwdl~s~~~~~~l 852 (1915)
||+ +|+++. .++.|.|+|+.+++.+.++
T Consensus 309 Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 309 DAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred CCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 999 777666 6788999999999887776
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG0280|consensus | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.3e-07 Score=105.84 Aligned_cols=281 Identities=12% Similarity=0.087 Sum_probs=177.3
Q ss_pred CCcEEEEECCCCceEE--Ee-ecCCCCeEEEEeccCccCCCc-EEEEEeCCCeEEEEecccCccccceeccCcccccccc
Q psy9598 539 DKTIRIWNLQTLAPIS--VL-VGHQGIITGVNFCPLEVNGFN-YLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERI 614 (1915)
Q Consensus 539 DgtIrVWDl~tg~~~~--~l-~~h~~~V~sl~fsp~~~~d~~-~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~ 614 (1915)
-|.+.++++...+.+. ++ ...+..++.+.|+--.. ++. .|+-+-..|.|.++..........+.. .....
T Consensus 45 ~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~-~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~---ls~~k-- 118 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRET-DGDFNLLDAHARGQIQLYRNDEDESSVHLRG---LSSKK-- 118 (339)
T ss_pred ccceEEEeecccccCccceeeeecccccceeeeeeccC-CccceeeeccccceEEEEeeccceeeeeecc---cchhh--
Confidence 3678888887654333 22 22345677788875442 334 677788889999997654432111111 10000
Q ss_pred CCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCC-CEEEEEeCCCcEEEEEcc
Q psy9598 615 RPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSH-LRFVSGSRDGTALIWYYK 693 (1915)
Q Consensus 615 ~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg-~~L~sgs~DG~I~IWDl~ 693 (1915)
-......++.|++.+..++++..+|.+.+-+. +......+..+++|.-.++...|+... +.+++|+.||.+..||++
T Consensus 119 -i~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~-t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R 196 (339)
T KOG0280|consen 119 -ISVVEALSLDISTSGTKIFVSDSRGSISGVYE-TEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIR 196 (339)
T ss_pred -hhheeeeEEEeeccCceEEEEcCCCcEEEEec-ceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEec
Confidence 00113568889999999999999999996655 223445556788999999999987543 588999999999999998
Q ss_pred CC-ceEEeeecccccCCCCccccccccccccEEEEEECCC-CCEEEEEEecCCeEEEEECCC-CceEEEeeCCCCCeEEE
Q psy9598 694 CS-QWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDAS-DRWVITAINFNFQIKIWDAFN-GDLVQVLKGHTNEVFVL 770 (1915)
Q Consensus 694 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spd-g~~L~t~s~~Dg~I~vwD~~t-g~~i~~l~gH~~~V~sl 770 (1915)
.. .++. .....|...|.+|.-+|. ..+|++|+. |-.|++||.++ ++++..-. -.+.|+.+
T Consensus 197 ~p~~~i~---------------~n~kvH~~GV~SI~ss~~~~~~I~TGsY-De~i~~~DtRnm~kPl~~~~-v~GGVWRi 259 (339)
T KOG0280|consen 197 IPKTFIW---------------HNSKVHTSGVVSIYSSPPKPTYIATGSY-DECIRVLDTRNMGKPLFKAK-VGGGVWRI 259 (339)
T ss_pred CCcceee---------------ecceeeecceEEEecCCCCCceEEEecc-ccceeeeehhcccCccccCc-cccceEEE
Confidence 33 2221 112347788888888765 667777777 99999999984 66665433 33789999
Q ss_pred EEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEEe-CCCeEE-EEeCCCC
Q psy9598 771 ESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTD-SYGHLL-VYGLGGF 846 (1915)
Q Consensus 771 ~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~-~dG~I~-Iwdl~s~ 846 (1915)
.++|.....|+.++.-.-.+|-++..+... ..... .....|.+-++...|..-..+||+|+ .|..++ +|--.++
T Consensus 260 ~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e-~~~~~-~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 260 KHHPEIFHRLLAACMHNGAKILDSSDKVLE-FQIVL-PSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred EecchhhhHHHHHHHhcCceEEEecccccc-hheee-eccccccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence 999965444444444344667777655442 11111 12234556667777755556677764 444433 6654443
|
|
| >KOG4532|consensus | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.3e-07 Score=102.46 Aligned_cols=265 Identities=13% Similarity=0.022 Sum_probs=167.5
Q ss_pred CCcEEEEECCCCc--EEEEEeCCCCCEEEEEEeC-----CCCEEEEEeCCCcEEEEECCCCceE-EEeecCCCCeEEEEe
Q psy9598 497 DLLIKLWRARDGK--LLATLRGCSGEISDIAIDN-----RNILLAAGTVDKTIRIWNLQTLAPI-SVLVGHQGIITGVNF 568 (1915)
Q Consensus 497 Dg~I~IWd~~tg~--~~~~l~gH~~~I~~Lafsp-----dg~~LaSgs~DgtIrVWDl~tg~~~-~~l~~h~~~V~sl~f 568 (1915)
...|-+|++.+.. .+... ..|.|.| ...+||.|+.-|...+|.+.+.... .....|...|+-+.=
T Consensus 51 t~sv~i~~~y~N~~~iv~~y-------~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r 123 (344)
T KOG4532|consen 51 TISVPINSHYSNPKGIVEFY-------TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKR 123 (344)
T ss_pred eeeeEeccccCCchhhEEee-------ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhh
Confidence 3456677765443 22222 2234443 3458999999999999999865432 223334433322111
Q ss_pred ccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEec
Q psy9598 569 CPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMD 648 (1915)
Q Consensus 569 sp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~ 648 (1915)
.- ....-+..++.|.++++.++..+..-....+. .-.+.++++++++.++++.+....|..|.++
T Consensus 124 ~c---d~~~~~~i~sndht~k~~~~~~~s~~~~~h~~------------~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id 188 (344)
T KOG4532|consen 124 YC---DLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQ------------NLTQNSLHYSNDPSWGSSVGDSRRVFRYAID 188 (344)
T ss_pred hc---ccccceeeccCCcceeEEEEecCcccceeecc------------ccceeeeEEcCCCceEEEecCCCcceEEEeC
Confidence 00 12245778899999999988766432111111 1237899999999999999999999999996
Q ss_pred CCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEE
Q psy9598 649 GVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVA 728 (1915)
Q Consensus 649 ~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va 728 (1915)
.......-.......+.-.+..|+.....||+++.||++.|||++..... ..........|.+.+..+.
T Consensus 189 ~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tp-----------m~~~sstrp~hnGa~R~c~ 257 (344)
T KOG4532|consen 189 DESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATP-----------MAEISSTRPHHNGAFRVCR 257 (344)
T ss_pred CccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccc-----------hhhhcccCCCCCCceEEEE
Confidence 54332222233444555678889999999999999999999999876521 1112223344889999999
Q ss_pred ECCCCC--EEEEEEecCCeEEEEECCCCceEEEeeC-------CC-CCeEEEEEccCCCCEEEEEecCceEEEEECCCC
Q psy9598 729 WDASDR--WVITAINFNFQIKIWDAFNGDLVQVLKG-------HT-NEVFVLESHPFDSRVLLSAGHDGLIIIWDILSS 797 (1915)
Q Consensus 729 ~spdg~--~L~t~s~~Dg~I~vwD~~tg~~i~~l~g-------H~-~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~ 797 (1915)
|++.|. +|+.+-. =+.+.|.|++++.-...+.. |. ..|+...|+. ++.-+.+.+.+ .+.=|++.+.
T Consensus 258 Fsl~g~lDLLf~sEh-fs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~-~n~s~~v~~e~-~~ae~ni~sr 333 (344)
T KOG4532|consen 258 FSLYGLLDLLFISEH-FSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNN-ENESNDVKNEL-QGAEYNILSR 333 (344)
T ss_pred ecCCCcceEEEEecC-cceEEEEEcccCceeeEEecCccccccccccccccccccC-CCcccccccch-hhheeecccc
Confidence 998664 3444433 67899999999876555432 22 2367777776 44444444433 4556666543
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=3.3e-07 Score=117.39 Aligned_cols=234 Identities=16% Similarity=0.123 Sum_probs=140.6
Q ss_pred cEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeC-CC--eEEEEecccCccccceeccCccccccccCCC
Q psy9598 541 TIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTST-DG--CIGFWKYKLDIDISKTVFHEPVMFNERIRPG 617 (1915)
Q Consensus 541 tIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~-Dg--tI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~ 617 (1915)
.|.++|...... ..+..+...+.+..|+|+ ++.|+..+. ++ .|.+||+.++.......+
T Consensus 199 ~l~i~d~dG~~~-~~l~~~~~~~~~p~wSPD----G~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~------------- 260 (448)
T PRK04792 199 QLMIADYDGYNE-QMLLRSPEPLMSPAWSPD----GRKLAYVSFENRKAEIFVQDIYTQVREKVTSF------------- 260 (448)
T ss_pred EEEEEeCCCCCc-eEeecCCCcccCceECCC----CCEEEEEEecCCCcEEEEEECCCCCeEEecCC-------------
Confidence 677778765443 455566778899999994 466766543 33 588888877642111100
Q ss_pred CCceEEEEECCCCcEEEE-EeCCCe--EEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeC-CCc--EEEEE
Q psy9598 618 NAHILCSSFSPGGLFLAT-GSGDHH--VRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSR-DGT--ALIWY 691 (1915)
Q Consensus 618 ~~~V~~l~fspdg~~Las-gs~Dg~--I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~-DG~--I~IWD 691 (1915)
.+.....+|+|+|+.|+. .+.+|. |.+||+.+. .+..+..+...+...+|+|+|..|+..+. +|. |.++|
T Consensus 261 ~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg----~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~d 336 (448)
T PRK04792 261 PGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATK----ALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVN 336 (448)
T ss_pred CCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCC----CeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEE
Confidence 122346799999997765 455665 666676332 13334455556778899999998776553 444 55556
Q ss_pred ccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCC--eEEEEECCCCceEEEeeCCCCCeEE
Q psy9598 692 YKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNF--QIKIWDAFNGDLVQVLKGHTNEVFV 769 (1915)
Q Consensus 692 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg--~I~vwD~~tg~~i~~l~gH~~~V~s 769 (1915)
+.+++...+.. ........+|+|+|++|+.++..++ .|.++|+.++.... +.... ....
T Consensus 337 l~~g~~~~Lt~-----------------~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~~-~d~~ 397 (448)
T PRK04792 337 LASGKVSRLTF-----------------EGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LTSTR-LDES 397 (448)
T ss_pred CCCCCEEEEec-----------------CCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE-ccCCC-CCCC
Confidence 66665433210 0111234689999999988766344 56667888876533 33221 2234
Q ss_pred EEEccCCCCEEEEEec-Cc--eEEEEECCCCccccceeeeeeecCCCCcceEEEEEcC
Q psy9598 770 LESHPFDSRVLLSAGH-DG--LIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSP 824 (1915)
Q Consensus 770 l~~sp~dg~~LaSgs~-DG--~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSp 824 (1915)
..|+| +++.|+..+. +| .|.++++. +.. ...+. .+.+.+...+|+|
T Consensus 398 ps~sp-dG~~I~~~~~~~g~~~l~~~~~~-G~~--~~~l~-----~~~g~~~~p~Wsp 446 (448)
T PRK04792 398 PSVAP-NGTMVIYSTTYQGKQVLAAVSID-GRF--KARLP-----AGQGEVKSPAWSP 446 (448)
T ss_pred ceECC-CCCEEEEEEecCCceEEEEEECC-CCc--eEECc-----CCCCCcCCCccCC
Confidence 57999 7777665544 44 36777774 333 22222 2335567778887
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.7e-06 Score=107.19 Aligned_cols=271 Identities=13% Similarity=0.034 Sum_probs=163.9
Q ss_pred CCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEE
Q psy9598 487 LGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGV 566 (1915)
Q Consensus 487 dg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl 566 (1915)
++..|++++.+|.|..||..+|+.+...... +.+.+.... .+..++.++.++.|..||..+|+.+..+......+...
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~ 181 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLS-SEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLR 181 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeeccC-ceeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeec
Confidence 4678888999999999999999998876533 233221111 24467777889999999999999887765433221110
Q ss_pred E-eccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCce-EEEEECCCCcEEEEEeCCCeEEE
Q psy9598 567 N-FCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHI-LCSSFSPGGLFLATGSGDHHVRV 644 (1915)
Q Consensus 567 ~-fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V-~~l~fspdg~~Lasgs~Dg~I~I 644 (1915)
. -+|.. .+..++.++.+|.+..+|+.++..+.......+..... .. ....+ .+..+ .+..+++++.+|.+..
T Consensus 182 ~~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~-~~-~~~~~~~~p~~--~~~~vy~~~~~g~l~a 255 (377)
T TIGR03300 182 GSASPVI--ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTE-LE-RLVDVDGDPVV--DGGQVYAVSYQGRVAA 255 (377)
T ss_pred CCCCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCc-hh-hhhccCCccEE--ECCEEEEEEcCCEEEE
Confidence 0 11111 12467888889999999998886554332221100000 00 00000 01111 2457888888999999
Q ss_pred EEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccE
Q psy9598 645 YKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKV 724 (1915)
Q Consensus 645 wDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V 724 (1915)
||..+. ..+.... .. ...... ..+..+++++.+|.|..+|..+++.+....... ...+
T Consensus 256 ~d~~tG---~~~W~~~-~~-~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~---------------~~~~ 313 (377)
T TIGR03300 256 LDLRSG---RVLWKRD-AS-SYQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELK---------------YRQL 313 (377)
T ss_pred EECCCC---cEEEeec-cC-CccCce--EeCCEEEEECCCCeEEEEECCCCcEEEcccccc---------------CCcc
Confidence 998432 2233222 11 111222 245688888899999999998887432110000 0011
Q ss_pred EEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEE
Q psy9598 725 TMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIW 792 (1915)
Q Consensus 725 ~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IW 792 (1915)
.+... .+..|++++. +|.|++||..+|+.+..+..+...+..--... + ..|+.++.||.|+.|
T Consensus 314 ssp~i--~g~~l~~~~~-~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~-~-~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 314 TAPAV--VGGYLVVGDF-EGYLHWLSREDGSFVARLKTDGSGIASPPVVV-G-DGLLVQTRDGDLYAF 376 (377)
T ss_pred ccCEE--ECCEEEEEeC-CCEEEEEECCCCCEEEEEEcCCCccccCCEEE-C-CEEEEEeCCceEEEe
Confidence 11111 3567888877 99999999999999999987765443322222 3 458889999999876
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.3e-06 Score=119.15 Aligned_cols=270 Identities=13% Similarity=0.097 Sum_probs=148.6
Q ss_pred EEEEEcCC-CCEEEEEECCCcEEEEECCCCcEEEEEeC--C------------CCCEEEEEEeCCCCEEEEE-eCCCcEE
Q psy9598 480 FCVLFDKL-GEVIVTGADDLLIKLWRARDGKLLATLRG--C------------SGEISDIAIDNRNILLAAG-TVDKTIR 543 (1915)
Q Consensus 480 ~~vafspd-g~~LaTGs~Dg~I~IWd~~tg~~~~~l~g--H------------~~~I~~Lafspdg~~LaSg-s~DgtIr 543 (1915)
..++++++ |.++++-+..+.|.+||.. |..+..+.+ . -.....|++++++..|+.+ +.++.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 35788874 6677777788899999974 555544432 1 1135789999988765554 4567899
Q ss_pred EEECCCCceEEEeecC-----------------CCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccC
Q psy9598 544 IWNLQTLAPISVLVGH-----------------QGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHE 606 (1915)
Q Consensus 544 VWDl~tg~~~~~l~~h-----------------~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~ 606 (1915)
++|+.++. +.++.+- -...++|+|+|. ++.++++.+.++.|++||..++...
T Consensus 650 ~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~---~g~LyVad~~~~~I~v~d~~~g~v~------- 718 (1057)
T PLN02919 650 EIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPV---NEKVYIAMAGQHQIWEYNISDGVTR------- 718 (1057)
T ss_pred EEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecC---CCeEEEEECCCCeEEEEECCCCeEE-------
Confidence 99987754 3333221 012245666652 2345555566666666665443210
Q ss_pred ccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCC-EEEEEeCCC
Q psy9598 607 PVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHL-RFVSGSRDG 685 (1915)
Q Consensus 607 ~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~-~L~sgs~DG 685 (1915)
.|..+|.... .+|. . .....-.....|+|+|+|. ++++.+.++
T Consensus 719 ------------------~~~G~G~~~~---~~g~----------~-----~~~~~~~~P~GIavspdG~~LYVADs~n~ 762 (1057)
T PLN02919 719 ------------------VFSGDGYERN---LNGS----------S-----GTSTSFAQPSGISLSPDLKELYIADSESS 762 (1057)
T ss_pred ------------------EEecCCcccc---CCCC----------c-----cccccccCccEEEEeCCCCEEEEEECCCC
Confidence 0000000000 0000 0 0000112244566666665 334444556
Q ss_pred cEEEEEccCCceEEeeeccc---ccC-C-CCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEe
Q psy9598 686 TALIWYYKCSQWRFIRLDMN---TCL-P-HTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVL 760 (1915)
Q Consensus 686 ~I~IWDl~~~~~~~~~~~~~---~~~-~-~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l 760 (1915)
.|++||+.++.......... ... . +................++++++|..+++-.. ++.|++||..++......
T Consensus 763 ~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~-N~rIrviD~~tg~v~tia 841 (1057)
T PLN02919 763 SIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSY-NHKIKKLDPATKRVTTLA 841 (1057)
T ss_pred eEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECC-CCEEEEEECCCCeEEEEe
Confidence 67777766544221110000 000 0 00000000001122357899999986555555 999999999877655332
Q ss_pred e-------------CCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCcc
Q psy9598 761 K-------------GHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQ 799 (1915)
Q Consensus 761 ~-------------gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~ 799 (1915)
. ++-.....|++++ +++++++-+.+++|++||+.++..
T Consensus 842 G~G~~G~~dG~~~~a~l~~P~GIavd~-dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 842 GTGKAGFKDGKALKAQLSEPAGLALGE-NGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred ccCCcCCCCCcccccccCCceEEEEeC-CCCEEEEECCCCEEEEEECCCCcc
Confidence 1 1112467899999 889999999999999999988765
|
|
| >KOG0386|consensus | Back alignment and domain information |
|---|
Probab=98.82 E-value=3.4e-09 Score=134.85 Aligned_cols=99 Identities=24% Similarity=0.419 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHcCCC------CCCCCCCCCCCCCCCccccccCccchhhHHhhhcCCCCCCHHHHHHHHHHHHHHhhhhc
Q psy9598 1535 NECREVLETLWVCPD------SEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYN 1608 (1915)
Q Consensus 1535 ~~~~~ll~~l~~~~~------s~~F~~pv~~~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~Dv~lif~Na~~yN 1608 (1915)
+.|..|+....++.+ +..|..++++.++||||.||++||++..|+++|..+.|.+..+...|++++|+||+.||
T Consensus 1027 ~~~~~i~~~~~~~~~~~~r~~~~~~~~~~s~k~~~d~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~na~~~~ 1106 (1157)
T KOG0386|consen 1027 KQALKIASTSIKYKDSAGRELSEVFLKLPSRKEYPDYYEIIKKPVAIDKIKKRIENHKYNSLKELEKDFMLLFNNARTYN 1106 (1157)
T ss_pred HHHHHHHHHHHhcccccccccchhcccCcccccccchHHHhcchhhHHHHhhhccccccchHHHHHHHHHhhcchhhhhc
Confidence 679999988886555 78999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy9598 1609 QNKRSKIYIMTTRLSEFAEEHLRRLT 1634 (1915)
Q Consensus 1609 ~~~~s~i~~~a~~l~~~f~~~~~~~~ 1634 (1915)
.++ |.+|.+|..|+.+|......+.
T Consensus 1107 ~eg-s~~y~d~~~l~~~~~~~~~~~~ 1131 (1157)
T KOG0386|consen 1107 EEG-SRVYEDAIVLQSVFKSARQEIS 1131 (1157)
T ss_pred cCC-ceechhHHHHHHHHhhhHHHHh
Confidence 988 9999999999999999988876
|
|
| >KOG0955|consensus | Back alignment and domain information |
|---|
Probab=98.82 E-value=4.1e-09 Score=139.24 Aligned_cols=109 Identities=27% Similarity=0.358 Sum_probs=100.4
Q ss_pred CchhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCccccCCCcCCHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhhc
Q psy9598 114 RPFNWKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYN 193 (1915)
Q Consensus 114 ~~~~~~~~~~~il~~l~~~~~~~~F~~pvd~~~~pdY~~iIk~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~Lif~N~~~yN 193 (1915)
...++...++.+|..|.+.+-...|..|||..++|||.++|++||||.||+.++..+.|.++++|.+|+.||..||+.||
T Consensus 562 ~l~p~~kLl~~~l~~lq~kD~~gif~~pvd~~e~pdy~~iik~pmd~~t~~~kl~s~~y~tle~ieed~~l~~~nc~~yn 641 (1051)
T KOG0955|consen 562 GLNPFKKLLQKSLDKLQKKDSYGIFAEPVDPSELPDYIDIIKKPMDFFTMRLKLESGAYSTLEPIEEDVNLIVSNCMEYN 641 (1051)
T ss_pred cCchHHHHHHHHHHHhhcccccCceeeccChhhcccHHHHhcCccchhhhhhhccccchhhhhHHHHhHhHhHhHHHHhh
Confidence 35577888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9598 194 QNKRSKIYIMTTRLSEFAEEHLRRLTVRWN 223 (1915)
Q Consensus 194 ~~~~s~i~~~a~~l~~~f~~~~~~~~~~~~ 223 (1915)
. .++.+|..|.+|++.-.+.+........
T Consensus 642 ~-~dtv~~r~av~~~e~~~~~~~~arke~e 670 (1051)
T KOG0955|consen 642 A-KDTVYYRAAVRLRELIKKDFRNARKEPE 670 (1051)
T ss_pred c-cCeehHhhhHHHHhhhhhHHHhcccchh
Confidence 9 5599999999999998888877655443
|
|
| >cd05491 Bromo_TBP7_like Bromodomain; TBP7_like subfamily, limited to fungi | Back alignment and domain information |
|---|
Probab=98.80 E-value=5.7e-09 Score=103.07 Aligned_cols=40 Identities=38% Similarity=0.674 Sum_probs=38.5
Q ss_pred CcCCHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhhcCC
Q psy9598 156 APMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQN 195 (1915)
Q Consensus 156 ~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~Lif~N~~~yN~~ 195 (1915)
.||||+||++||.+|+|.++++|++||+|||.||++||.+
T Consensus 63 y~MDL~tIe~RL~ng~Y~tp~~F~~DiklI~~Nc~~ynd~ 102 (119)
T cd05491 63 YNMDLDTIEERLWNGYYATPKDFLKDIKRIVRDAKTIGDR 102 (119)
T ss_pred eccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCH
Confidence 5799999999999999999999999999999999999974
|
TBP7, or TAT-binding protein homolog 7, is a yeast protein of unknown function that contains AAA-superfamily ATP-ase domains and a bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine. |
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.5e-06 Score=118.93 Aligned_cols=272 Identities=8% Similarity=-0.030 Sum_probs=165.0
Q ss_pred EEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCcccccc--ccCCCCCceEEEEECCCCcEEEEE-eCCC
Q psy9598 564 TGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNE--RIRPGNAHILCSSFSPGGLFLATG-SGDH 640 (1915)
Q Consensus 564 ~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~--~~~~~~~~V~~l~fspdg~~Lasg-s~Dg 640 (1915)
..+++.+. ++.++++-+.++.|.+||..... +..........+.. .....-.....++++++++.|+++ ..++
T Consensus 571 ~gvavd~~---~g~lyVaDs~n~rI~v~d~~G~~-i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~ 646 (1057)
T PLN02919 571 GKLAIDLL---NNRLFISDSNHNRIVVTDLDGNF-IVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENH 646 (1057)
T ss_pred ceEEEECC---CCeEEEEECCCCeEEEEeCCCCE-EEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCc
Confidence 45677653 35677888888999999976432 11111100000000 001112346789999988765554 4567
Q ss_pred eEEEEEecCCCCCceeEEeccC-----------------CCCeeEEEEcC-CCCEEEEEeCCCcEEEEEccCCceEEeee
Q psy9598 641 HVRVYKMDGVDSPLGILEVEEH-----------------SDKVDSIQWSH-SHLRFVSGSRDGTALIWYYKCSQWRFIRL 702 (1915)
Q Consensus 641 ~I~IwDl~~~~~~~~i~~l~~h-----------------~~~V~sl~fsp-dg~~L~sgs~DG~I~IWDl~~~~~~~~~~ 702 (1915)
.|+++|+.+. .+.++.+- -..-..|+|++ ++..+++.+.++.|++||..++.......
T Consensus 647 ~Ir~id~~~~----~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G 722 (1057)
T PLN02919 647 ALREIDFVNE----TVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSG 722 (1057)
T ss_pred eEEEEecCCC----EEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEec
Confidence 8999987432 12222110 12335789999 56677788888999999988775432211
Q ss_pred cccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeC-------------C------
Q psy9598 703 DMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKG-------------H------ 763 (1915)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~g-------------H------ 763 (1915)
. ...... ...............|+|+++|..|+++...++.|++||+.++.......+ +
T Consensus 723 ~-G~~~~~-~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~ 800 (1057)
T PLN02919 723 D-GYERNL-NGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSE 800 (1057)
T ss_pred C-CccccC-CCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhh
Confidence 0 000000 000000112234577999999998887777689999999987653221110 0
Q ss_pred --CCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeec--------CCCCcceEEEEEcCCCCEEEEEe
Q psy9598 764 --TNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVE--------GQGEGALFDGKWSPDGTTCALTD 833 (1915)
Q Consensus 764 --~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~--------~~~~~~V~~vafSpdg~~Lasg~ 833 (1915)
-....+|++++ ++.++++-+.++.|++||..++.. ......-.. .........++++++|+++++-+
T Consensus 801 ~~l~~P~Gvavd~-dG~LYVADs~N~rIrviD~~tg~v--~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt 877 (1057)
T PLN02919 801 VLLQHPLGVLCAK-DGQIYVADSYNHKIKKLDPATKRV--TTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADT 877 (1057)
T ss_pred hhccCCceeeEeC-CCcEEEEECCCCEEEEEECCCCeE--EEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEEC
Confidence 01235788998 888999999999999999987665 211110000 00112567899999999888888
Q ss_pred CCCeEEEEeCCCCcc
Q psy9598 834 SYGHLLVYGLGGFKR 848 (1915)
Q Consensus 834 ~dG~I~Iwdl~s~~~ 848 (1915)
.++.|++|++.++..
T Consensus 878 ~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 878 NNSLIRYLDLNKGEA 892 (1057)
T ss_pred CCCEEEEEECCCCcc
Confidence 999999999988754
|
|
| >KOG0386|consensus | Back alignment and domain information |
|---|
Probab=98.78 E-value=1e-08 Score=130.68 Aligned_cols=100 Identities=24% Similarity=0.409 Sum_probs=93.3
Q ss_pred HHHHHHHHHHhcCCC------CCCCCCCCCCCCCCCccccCCCcCCHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhhc
Q psy9598 120 NECREVLETLWVCPD------SEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYN 193 (1915)
Q Consensus 120 ~~~~~il~~l~~~~~------~~~F~~pvd~~~~pdY~~iIk~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~Lif~N~~~yN 193 (1915)
..|..|+....++.+ +..|...++...+||||+||+.||++..|+++|.++.|.+..+...||.++|.||++||
T Consensus 1027 ~~~~~i~~~~~~~~~~~~r~~~~~~~~~~s~k~~~d~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~na~~~~ 1106 (1157)
T KOG0386|consen 1027 KQALKIASTSIKYKDSAGRELSEVFLKLPSRKEYPDYYEIIKKPVAIDKIKKRIENHKYNSLKELEKDFMLLFNNARTYN 1106 (1157)
T ss_pred HHHHHHHHHHHhcccccccccchhcccCcccccccchHHHhcchhhHHHHhhhccccccchHHHHHHHHHhhcchhhhhc
Confidence 678888888886555 68999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy9598 194 QNKRSKIYIMTTRLSEFAEEHLRRLTV 220 (1915)
Q Consensus 194 ~~~~s~i~~~a~~l~~~f~~~~~~~~~ 220 (1915)
.++ |.||..|..|+.+|......+..
T Consensus 1107 ~eg-s~~y~d~~~l~~~~~~~~~~~~~ 1132 (1157)
T KOG0386|consen 1107 EEG-SRVYEDAIVLQSVFKSARQEISK 1132 (1157)
T ss_pred cCC-ceechhHHHHHHHHhhhHHHHhc
Confidence 987 99999999999999999888765
|
|
| >KOG0280|consensus | Back alignment and domain information |
|---|
Probab=98.77 E-value=3.9e-07 Score=102.16 Aligned_cols=250 Identities=18% Similarity=0.219 Sum_probs=162.8
Q ss_pred CcEEEEEEcC---CCC-EEEEEECCCcEEEEECCCCcEEEEEeCCCC------CEEEEEEeCCCCEEEEEeCCCcEEEEE
Q psy9598 477 SAVFCVLFDK---LGE-VIVTGADDLLIKLWRARDGKLLATLRGCSG------EISDIAIDNRNILLAAGTVDKTIRIWN 546 (1915)
Q Consensus 477 ~~V~~vafsp---dg~-~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~------~I~~Lafspdg~~LaSgs~DgtIrVWD 546 (1915)
+.++.+.|.. +|. .|+-+-.+|.|.++..........|++-.. ...++.|++.+.-++++-.+|.+.+-+
T Consensus 70 s~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~ 149 (339)
T KOG0280|consen 70 STEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVY 149 (339)
T ss_pred cccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEe
Confidence 4455555542 344 455666778888887665554445543322 245778899999999999999999666
Q ss_pred CCCCce--EEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEE
Q psy9598 547 LQTLAP--ISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCS 624 (1915)
Q Consensus 547 l~tg~~--~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l 624 (1915)
...... ++.++.|.-.++...|+... .+++++|+.||.+..||++... ...++ ....|...|.|+
T Consensus 150 ~t~~~le~vq~wk~He~E~Wta~f~~~~---pnlvytGgDD~~l~~~D~R~p~---~~i~~-------n~kvH~~GV~SI 216 (339)
T KOG0280|consen 150 ETEMVLEKVQTWKVHEFEAWTAKFSDKE---PNLVYTGGDDGSLSCWDIRIPK---TFIWH-------NSKVHTSGVVSI 216 (339)
T ss_pred cceeeeeecccccccceeeeeeecccCC---CceEEecCCCceEEEEEecCCc---ceeee-------cceeeecceEEE
Confidence 555443 34788999999999998754 4899999999999999998432 22222 122456788888
Q ss_pred EECC-CCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCC--EEEEEeCCCcEEEEEccCCceEEee
Q psy9598 625 SFSP-GGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHL--RFVSGSRDGTALIWYYKCSQWRFIR 701 (1915)
Q Consensus 625 ~fsp-dg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~--~L~sgs~DG~I~IWDl~~~~~~~~~ 701 (1915)
.-+| .+.+|++|+.|-.|++||.+....+..-. .-.+.|+.|.++|.-. .|+++-. .-++|-+...+...
T Consensus 217 ~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~---~v~GGVWRi~~~p~~~~~lL~~CMh-~G~ki~~~~~~~~e--- 289 (339)
T KOG0280|consen 217 YSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKA---KVGGGVWRIKHHPEIFHRLLAACMH-NGAKILDSSDKVLE--- 289 (339)
T ss_pred ecCCCCCceEEEeccccceeeeehhcccCccccC---ccccceEEEEecchhhhHHHHHHHh-cCceEEEecccccc---
Confidence 8876 57899999999999999997555443322 2347899999998643 3344333 33556555543311
Q ss_pred ecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEE-EEECCCC
Q psy9598 702 LDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIK-IWDAFNG 754 (1915)
Q Consensus 702 ~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~-vwD~~tg 754 (1915)
..........|.+-+..-.|.....+|++++..|..++ +|-.-++
T Consensus 290 --------~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 290 --------FQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred --------hheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence 00111223345555556666555667777766677644 6654443
|
|
| >cd05491 Bromo_TBP7_like Bromodomain; TBP7_like subfamily, limited to fungi | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.3e-08 Score=100.51 Aligned_cols=42 Identities=21% Similarity=0.392 Sum_probs=40.0
Q ss_pred CCCCCHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhhcCCC
Q psy9598 1411 EYPVDLTTLRARFQNRFYRRITSAQFDVRYLAANAEKFNEPH 1452 (1915)
Q Consensus 1411 ~~PmdL~tI~~rl~~~~Y~~~~~~~~D~~l~~~Na~~yN~~~ 1452 (1915)
-+||||+||++||.+|+|.+..+|++|++||+.||++||.++
T Consensus 62 ~y~MDL~tIe~RL~ng~Y~tp~~F~~DiklI~~Nc~~ynd~d 103 (119)
T cd05491 62 FYNMDLDTIEERLWNGYYATPKDFLKDIKRIVRDAKTIGDRE 103 (119)
T ss_pred EeccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCHH
Confidence 369999999999999999999999999999999999999874
|
TBP7, or TAT-binding protein homolog 7, is a yeast protein of unknown function that contains AAA-superfamily ATP-ase domains and a bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine. |
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.1e-05 Score=94.25 Aligned_cols=272 Identities=11% Similarity=0.047 Sum_probs=170.3
Q ss_pred CCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCC---CeEEEEEecCC-CCCceeEEec
Q psy9598 585 DGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGD---HHVRVYKMDGV-DSPLGILEVE 660 (1915)
Q Consensus 585 DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~D---g~I~IwDl~~~-~~~~~i~~l~ 660 (1915)
+.-|.+|++.+......... .....+.++-++|+|++++|.++..+ |.|..|.++.. .....+....
T Consensus 15 s~gI~v~~ld~~~g~l~~~~---------~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~ 85 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQ---------LVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQT 85 (346)
T ss_pred CCceEEEEEeCcccccchhh---------hccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccc
Confidence 46799999985532211111 11234677889999999998887654 78888888643 2222222222
Q ss_pred cCCCCeeEEEEcCCCCEEEEEe-CCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEE
Q psy9598 661 EHSDKVDSIQWSHSHLRFVSGS-RDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITA 739 (1915)
Q Consensus 661 ~h~~~V~sl~fspdg~~L~sgs-~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~ 739 (1915)
.-..+-..|+++++|++|+++. .-|.|.++-++..-.+.............. ........+.+..++|++++|++.
T Consensus 86 ~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p---~~rQ~~~h~H~a~~tP~~~~l~v~ 162 (346)
T COG2706 86 LPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGP---HERQESPHVHSANFTPDGRYLVVP 162 (346)
T ss_pred cCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCC---CccccCCccceeeeCCCCCEEEEe
Confidence 2223337899999999888776 458899998865321111100000000000 011223447889999999999998
Q ss_pred EecCCeEEEEECCCCceEEEee---CCCCCeEEEEEccCCCCEEEEEec-CceEEEEECCCC--ccccceeeeeeec-CC
Q psy9598 740 INFNFQIKIWDAFNGDLVQVLK---GHTNEVFVLESHPFDSRVLLSAGH-DGLIIIWDILSS--KQRGYKWFHNIVE-GQ 812 (1915)
Q Consensus 740 s~~Dg~I~vwD~~tg~~i~~l~---gH~~~V~sl~~sp~dg~~LaSgs~-DG~I~IWdl~s~--~~~~~~~~~~~~~-~~ 812 (1915)
.-.--.|.+|++..|.+...-. .....-..|.||| +++++...+. +++|.+|..... +...++.+..+-. ..
T Consensus 163 DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHp-n~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~ 241 (346)
T COG2706 163 DLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHP-NGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFT 241 (346)
T ss_pred ecCCceEEEEEcccCccccccccccCCCCCcceEEEcC-CCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccC
Confidence 7656689999999776543222 2334567899999 8888877665 899999999873 3222333222111 23
Q ss_pred CCcceEEEEEcCCCCEEEEEeC-CCeEEEEeCCCCcc-c---------ccCCCceeecCCCCeeeecC
Q psy9598 813 GEGALFDGKWSPDGTTCALTDS-YGHLLVYGLGGFKR-P---------QNIPRELFFHTDYRTLNRPN 869 (1915)
Q Consensus 813 ~~~~V~~vafSpdg~~Lasg~~-dG~I~Iwdl~s~~~-~---------~~l~~~~~F~~d~~~Lv~~~ 869 (1915)
+.....++.+++||++|.++.. ...|.+|.+..... + ...|....|.++++.|+...
T Consensus 242 g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~ 309 (346)
T COG2706 242 GTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAAN 309 (346)
T ss_pred CCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEc
Confidence 3456778899999999998853 23677887763211 1 23466778899999998554
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=4e-06 Score=106.19 Aligned_cols=305 Identities=9% Similarity=-0.006 Sum_probs=179.0
Q ss_pred CCEEEEEECCCcEEEEECCCCcEEEEEeCCCC----------CEE-EEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEe
Q psy9598 488 GEVIVTGADDLLIKLWRARDGKLLATLRGCSG----------EIS-DIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVL 556 (1915)
Q Consensus 488 g~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~----------~I~-~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l 556 (1915)
+..|++++.+|.|.-+|..+|+.+........ .+. .+.. ++..|+.++.++.|..+|..+|+.+...
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~ 146 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGEVAWQT 146 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCCCCCcccc
Confidence 66888888899999999999998887643220 010 1111 3456777888999999999999988776
Q ss_pred ecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEE
Q psy9598 557 VGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATG 636 (1915)
Q Consensus 557 ~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasg 636 (1915)
.... .+.+ +|.- .+..++.++.+|.|..+|..++..+.......+... ......++. .+..++.+
T Consensus 147 ~~~~-~~~s---sP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~---~~~~~sP~v------~~~~v~~~ 211 (394)
T PRK11138 147 KVAG-EALS---RPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLT---LRGESAPAT------AFGGAIVG 211 (394)
T ss_pred cCCC-ceec---CCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCccc---ccCCCCCEE------ECCEEEEE
Confidence 5432 2211 1211 125677788899999999999987665544311100 000111111 12346667
Q ss_pred eCCCeEEEEEecCCCCCceeEEeccCC--C---CeeEEEEcC--CCCEEEEEeCCCcEEEEEccCCceEEeeecccccCC
Q psy9598 637 SGDHHVRVYKMDGVDSPLGILEVEEHS--D---KVDSIQWSH--SHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLP 709 (1915)
Q Consensus 637 s~Dg~I~IwDl~~~~~~~~i~~l~~h~--~---~V~sl~fsp--dg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~ 709 (1915)
+.+|.+..+|..+....-.. .+.... . ....+..+| .+..+++++.+|.+..+|+.+++.+... ...
T Consensus 212 ~~~g~v~a~d~~~G~~~W~~-~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~-~~~---- 285 (394)
T PRK11138 212 GDNGRVSAVLMEQGQLIWQQ-RISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKR-EYG---- 285 (394)
T ss_pred cCCCEEEEEEccCChhhhee-ccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEee-cCC----
Confidence 77888888887432211110 000000 0 000111111 2456777888999999999988744321 000
Q ss_pred CCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCC-CeEEEEEccCCCCEEEEEecCce
Q psy9598 710 HTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTN-EVFVLESHPFDSRVLLSAGHDGL 788 (1915)
Q Consensus 710 ~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~-~V~sl~~sp~dg~~LaSgs~DG~ 788 (1915)
. ...+. ..+..|++++. +|.|..+|..+|+.+.....-.. ...+..+ .+..|+.++.||.
T Consensus 286 ----------~---~~~~~--~~~~~vy~~~~-~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v---~~g~l~v~~~~G~ 346 (394)
T PRK11138 286 ----------S---VNDFA--VDGGRIYLVDQ-NDRVYALDTRGGVELWSQSDLLHRLLTAPVL---YNGYLVVGDSEGY 346 (394)
T ss_pred ----------C---ccCcE--EECCEEEEEcC-CCeEEEEECCCCcEEEcccccCCCcccCCEE---ECCEEEEEeCCCE
Confidence 0 00111 23566777776 89999999999987664432111 1222222 2467788999999
Q ss_pred EEEEECCCCccccceeeeeeecCCCCcceEE-EEEcCCCCEEEEEeCCCeEEEEeC
Q psy9598 789 IIIWDILSSKQRGYKWFHNIVEGQGEGALFD-GKWSPDGTTCALTDSYGHLLVYGL 843 (1915)
Q Consensus 789 I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~-vafSpdg~~Lasg~~dG~I~Iwdl 843 (1915)
|.+.|..+|+. +.... + ....+.+ ..+ .+..|++++.+|.|+.+.+
T Consensus 347 l~~ld~~tG~~--~~~~~--~---~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 347 LHWINREDGRF--VAQQK--V---DSSGFLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred EEEEECCCCCE--EEEEE--c---CCCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 99999999987 44433 1 1111221 111 3557888999999988864
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.69 E-value=4.1e-07 Score=101.81 Aligned_cols=259 Identities=19% Similarity=0.254 Sum_probs=170.2
Q ss_pred CceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCC--ceeEEeccCC------------CCeeEEEEcCCCC--EEEEEe
Q psy9598 619 AHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSP--LGILEVEEHS------------DKVDSIQWSHSHL--RFVSGS 682 (1915)
Q Consensus 619 ~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~--~~i~~l~~h~------------~~V~sl~fspdg~--~L~sgs 682 (1915)
..|+++.|...|.+|++|...|.|.+|.-...... ..+..+++|. ..|..|.|..++. .|+..+
T Consensus 27 d~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlst 106 (460)
T COG5170 27 DKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLST 106 (460)
T ss_pred ceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEec
Confidence 56899999999999999999999999986433211 1223355554 3577888876543 678888
Q ss_pred CCCcEEEEEccCCceEEeee---------ccccc-----------CCC-------CccccccccccccEEEEEECCCCCE
Q psy9598 683 RDGTALIWYYKCSQWRFIRL---------DMNTC-----------LPH-------TKETSDETNKKIKVTMVAWDASDRW 735 (1915)
Q Consensus 683 ~DG~I~IWDl~~~~~~~~~~---------~~~~~-----------~~~-------~~~~~~~~~~~~~V~~va~spdg~~ 735 (1915)
.|.+|++|.+.......+.. .+... +.. .+.......|...|++++|..|..+
T Consensus 107 NdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~et 186 (460)
T COG5170 107 NDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKET 186 (460)
T ss_pred CCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchhe
Confidence 99999999887553221110 00000 000 0000112457778999999999999
Q ss_pred EEEEEecCCeEEEEECCCCc---eEEEeeCCC-----CCeEEEEEccCCCCEEEEEecCceEEEEECCCCccc--cceee
Q psy9598 736 VITAINFNFQIKIWDAFNGD---LVQVLKGHT-----NEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQR--GYKWF 805 (1915)
Q Consensus 736 L~t~s~~Dg~I~vwD~~tg~---~i~~l~gH~-----~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~--~~~~~ 805 (1915)
++++. |-.|.+|++.-.. -+.-++.|. ..|++..|||....++.-.+..|.|++-|++....- ....+
T Consensus 187 ~lSaD--dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klf 264 (460)
T COG5170 187 LLSAD--DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLF 264 (460)
T ss_pred eeecc--ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhh
Confidence 88775 6889999986422 233344554 358889999987888888899999999999743220 01112
Q ss_pred eeeecCC-------CCcceEEEEEcCCCCEEEEEeCCCeEEEEeCCCC-cccccCCC---------------------ce
Q psy9598 806 HNIVEGQ-------GEGALFDGKWSPDGTTCALTDSYGHLLVYGLGGF-KRPQNIPR---------------------EL 856 (1915)
Q Consensus 806 ~~~~~~~-------~~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl~s~-~~~~~l~~---------------------~~ 856 (1915)
...+.+. -...|.++.|+++|++|++-+. -+|.|||+... .++.++|. ++
T Consensus 265 e~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFei 343 (460)
T COG5170 265 ELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEI 343 (460)
T ss_pred hhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEE
Confidence 2112221 1247889999999999998887 58999999865 46677754 45
Q ss_pred eecCCCCeeeecC-CCccceeeccc
Q psy9598 857 FFHTDYRTLNRPN-GLFEPTYDEVT 880 (1915)
Q Consensus 857 ~F~~d~~~Lv~~~-~~~~~v~D~~t 880 (1915)
.|+.|...+..++ .+.+++|-+.+
T Consensus 344 sfSgd~~~v~sgsy~NNfgiyp~~s 368 (460)
T COG5170 344 SFSGDDKHVLSGSYSNNFGIYPTDS 368 (460)
T ss_pred EecCCcccccccccccceeeecccc
Confidence 6777776666443 33355664333
|
|
| >KOG0309|consensus | Back alignment and domain information |
|---|
Probab=98.68 E-value=7.9e-08 Score=117.71 Aligned_cols=213 Identities=21% Similarity=0.370 Sum_probs=147.9
Q ss_pred eEEecCCCCcEEEEEEcCC-CCEEEEEECCCcEEEEECCCC-cEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEE
Q psy9598 469 HYVNLGHLSAVFCVLFDKL-GEVIVTGADDLLIKLWRARDG-KLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWN 546 (1915)
Q Consensus 469 ~~~l~gH~~~V~~vafspd-g~~LaTGs~Dg~I~IWd~~tg-~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWD 546 (1915)
-..|.||..+|+.+-|.|. -..|+|++.|..|..||+.+- ..+..+..-...-..++|+.-...+.+.+....|+|||
T Consensus 107 ef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd 186 (1081)
T KOG0309|consen 107 EFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWD 186 (1081)
T ss_pred EEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEe
Confidence 3567899999999999985 467899999999999999876 35555554455667899987555555556678899999
Q ss_pred CCCC-ceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEE
Q psy9598 547 LQTL-APISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSS 625 (1915)
Q Consensus 547 l~tg-~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~ 625 (1915)
+..| .++..+++|...|+++.|.... ...+.+++.||+|++||............. ....|.-..
T Consensus 187 ~r~gs~pl~s~K~~vs~vn~~~fnr~~---~s~~~s~~~d~tvkfw~y~kSt~e~~~~vt-----------t~~piw~~r 252 (1081)
T KOG0309|consen 187 LRKGSTPLCSLKGHVSSVNSIDFNRFK---YSEIMSSSNDGTVKFWDYSKSTTESKRTVT-----------TNFPIWRGR 252 (1081)
T ss_pred ccCCCcceEEecccceeeehHHHhhhh---hhhhcccCCCCceeeecccccccccceecc-----------ccCcceecc
Confidence 9865 5788999999999999998753 367899999999999998765432222111 123334344
Q ss_pred ECCCCc--EEEEEeCCCeEEEEEecC-------CCCCceeEEeccCCCCeeEEEEcCCCC----------EEEEEeCCCc
Q psy9598 626 FSPGGL--FLATGSGDHHVRVYKMDG-------VDSPLGILEVEEHSDKVDSIQWSHSHL----------RFVSGSRDGT 686 (1915)
Q Consensus 626 fspdg~--~Lasgs~Dg~I~IwDl~~-------~~~~~~i~~l~~h~~~V~sl~fspdg~----------~L~sgs~DG~ 686 (1915)
+.|-|. ++.---.+..|.+++.+. ......++.+.||.+.|..+.|-..+. .|++-|.|.+
T Consensus 253 ~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~ 332 (1081)
T KOG0309|consen 253 YLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQT 332 (1081)
T ss_pred ccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCc
Confidence 444222 111111111333333321 124567889999999998887754332 6999999999
Q ss_pred EEEEEccCC
Q psy9598 687 ALIWYYKCS 695 (1915)
Q Consensus 687 I~IWDl~~~ 695 (1915)
+++|-+...
T Consensus 333 lrlWpI~~~ 341 (1081)
T KOG0309|consen 333 LRLWPIDSQ 341 (1081)
T ss_pred eEeeeccHH
Confidence 999977643
|
|
| >KOG4714|consensus | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.6e-07 Score=101.71 Aligned_cols=211 Identities=15% Similarity=0.113 Sum_probs=122.4
Q ss_pred eEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeE
Q psy9598 563 ITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHV 642 (1915)
Q Consensus 563 V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I 642 (1915)
|+.+.|.. ...|+++..++.+..+....+.+.....-.........+..+...-.+-..+--++-+++|+.||.+
T Consensus 39 ~~~~~~v~-----~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~ 113 (319)
T KOG4714|consen 39 LSKVSLSA-----EYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSL 113 (319)
T ss_pred EEEeechh-----hheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceE
Confidence 44445543 3567777777766665544332221111110000000111122222233334456679999999999
Q ss_pred EEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeC-----CCcEEEEEccCCceEEeeecccccCCCCcccccc
Q psy9598 643 RVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSR-----DGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDE 717 (1915)
Q Consensus 643 ~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~-----DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~ 717 (1915)
.+++.+.. ......+......-.+.++...++.+.++.. -+..++|+++..... .+ ..
T Consensus 114 ~v~s~~~~--~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~---------~~------~~ 176 (319)
T KOG4714|consen 114 AVFSTDKD--LALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTL---------IP------SK 176 (319)
T ss_pred EEEechHH--HhhhhhcccccccccccceeecccEEecCCcceEeeccceeeecccccccc---------cc------cc
Confidence 99998531 1111111111222223334445555554432 123445544432211 01 01
Q ss_pred ccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCce-EEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCC
Q psy9598 718 TNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDL-VQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILS 796 (1915)
Q Consensus 718 ~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~-i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s 796 (1915)
.....|.+++-+|..+.+++++..||.+-+||.++... +..+..|..+|+.|-|||.++..|++++.||.+..||..+
T Consensus 177 -~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 177 -KALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred -cccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 11223899999999888887777799999999988743 4456799999999999999999999999999999999875
|
|
| >KOG0882|consensus | Back alignment and domain information |
|---|
Probab=98.65 E-value=7.4e-07 Score=104.66 Aligned_cols=300 Identities=14% Similarity=0.139 Sum_probs=197.8
Q ss_pred CCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCC--C-cEEEEEeCCCCCEEEEEEeCCCCEEEEEeC-CCcEEEEECCC
Q psy9598 474 GHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARD--G-KLLATLRGCSGEISDIAIDNRNILLAAGTV-DKTIRIWNLQT 549 (1915)
Q Consensus 474 gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~t--g-~~~~~l~gH~~~I~~Lafspdg~~LaSgs~-DgtIrVWDl~t 549 (1915)
-|.+.|+.|..+- ..++++++.||.++.|.-.. | +.+..+..|.+.|.+|+.+.++.++.|++. |..++++|+.+
T Consensus 7 mhrd~i~hv~~tk-a~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn 85 (558)
T KOG0882|consen 7 MHRDVITHVFPTK-AKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVEN 85 (558)
T ss_pred cccceeeeEeeeh-hheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeec
Confidence 4778888876654 56999999999999998543 2 455667889999999999999999999887 99999999987
Q ss_pred CceEEEee--cCCCCeEEEEeccCccCCC--cEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEE
Q psy9598 550 LAPISVLV--GHQGIITGVNFCPLEVNGF--NYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSS 625 (1915)
Q Consensus 550 g~~~~~l~--~h~~~V~sl~fsp~~~~d~--~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~ 625 (1915)
...+.-+. .-.+.+. +..++ ++. .+.++.-.+|.|.++|-....+.... ...-|..+|.++.
T Consensus 86 ~DminmiKL~~lPg~a~-wv~sk---Gd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~----------fkklH~sPV~~i~ 151 (558)
T KOG0882|consen 86 FDMINMIKLVDLPGFAE-WVTSK---GDKISLIAVSLFKSGKIFVVDGFGDFCQDGY----------FKKLHFSPVKKIR 151 (558)
T ss_pred cchhhhcccccCCCceE-EecCC---CCeeeeEEeecccCCCcEEECCcCCcCccce----------ecccccCceEEEE
Confidence 55443222 1122221 12222 111 22333346788999987655432111 1124668999999
Q ss_pred ECCCCcEEEEEeCCCeEEEEEecCC-CCC-----------ceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEcc
Q psy9598 626 FSPGGLFLATGSGDHHVRVYKMDGV-DSP-----------LGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYK 693 (1915)
Q Consensus 626 fspdg~~Lasgs~Dg~I~IwDl~~~-~~~-----------~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~ 693 (1915)
+++.+..++++...|.|.-|..... ..+ .-+..+........++.|+|+|..+.+-+.|..|+++++.
T Consensus 152 y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~K 231 (558)
T KOG0882|consen 152 YNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFK 231 (558)
T ss_pred eeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEec
Confidence 9999999999999999999998531 000 0111222345667899999999999999999999999999
Q ss_pred CCceEEeeecccc---cCC---CCccc----------cc-cccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCce
Q psy9598 694 CSQWRFIRLDMNT---CLP---HTKET----------SD-ETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDL 756 (1915)
Q Consensus 694 ~~~~~~~~~~~~~---~~~---~~~~~----------~~-~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~ 756 (1915)
++..+...-...+ ..+ ..... .. .......-+.++|+..|.+|+.++- --|+|.++.++.+
T Consensus 232 tGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~--~gikvin~~tn~v 309 (558)
T KOG0882|consen 232 TGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTI--LGIKVINLDTNTV 309 (558)
T ss_pred cchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecc--eeEEEEEeecCeE
Confidence 9876443211110 000 00000 00 1112234467889999999998875 4589999999888
Q ss_pred EEEeeCCCCCe--------------------------EEEEEccCCCCEEEEEecCceEEEE
Q psy9598 757 VQVLKGHTNEV--------------------------FVLESHPFDSRVLLSAGHDGLIIIW 792 (1915)
Q Consensus 757 i~~l~gH~~~V--------------------------~sl~~sp~dg~~LaSgs~DG~I~IW 792 (1915)
++.+--.. .| -.+.+.+ |..+++++-....+++|
T Consensus 310 ~ri~gk~e-~ir~~~~sl~q~~~k~~~~~~~~~a~~np~~~~~~-dpt~~c~a~kk~rfylf 369 (558)
T KOG0882|consen 310 VRILGKDE-AIRFTRLSLYQGAQKSNLAALEVAASNNPLLEFQK-DPTIVCTAFKKNRFYLF 369 (558)
T ss_pred EEEeccch-hhhhhhHHHHhhhhhccchhhhhhhccCcccccCC-CCeEEEeeeecceEEEE
Confidence 77652111 11 0122334 66777777777888888
|
|
| >KOG1645|consensus | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.9e-06 Score=100.47 Aligned_cols=271 Identities=13% Similarity=0.067 Sum_probs=162.9
Q ss_pred EEEEECCCCcEEEEEeCCCCCEEEEEEeCCCC-EEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcE
Q psy9598 500 IKLWRARDGKLLATLRGCSGEISDIAIDNRNI-LLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNY 578 (1915)
Q Consensus 500 I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~-~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~ 578 (1915)
|++.+..+.+....+.+|...|.+|+|||.+. +|..++.+..|.|.|+.+..++..+..| ..+++++|.-+ +.++
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDld---e~h~ 250 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLD---ERHV 250 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccC---Ccce
Confidence 78888777777777889999999999999877 7888999999999999999999888888 88999999874 4689
Q ss_pred EEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEE------EECCCCcEEEEEeCCCeEEEEEecCCC-
Q psy9598 579 LASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCS------SFSPGGLFLATGSGDHHVRVYKMDGVD- 651 (1915)
Q Consensus 579 L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l------~fspdg~~Lasgs~Dg~I~IwDl~~~~- 651 (1915)
|+.|-.+|.|.|||++............. ...+|..+ ...+.|.+|+..+.+ +..|.+....
T Consensus 251 IYaGl~nG~VlvyD~R~~~~~~~e~~a~~---------t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~ 319 (463)
T KOG1645|consen 251 IYAGLQNGMVLVYDMRQPEGPLMELVANV---------TINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAE 319 (463)
T ss_pred eEEeccCceEEEEEccCCCchHhhhhhhh---------ccCcceeecccCccccccccceEEeeehh--hhhhhhhcccc
Confidence 99999999999999987654221111100 00122222 233345556555543 5567764322
Q ss_pred CCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCC-------cEEE-EEccCCceEEeeecccccCCCCcccccccccccc
Q psy9598 652 SPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDG-------TALI-WYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIK 723 (1915)
Q Consensus 652 ~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG-------~I~I-WDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 723 (1915)
...++..+ +..+.+.++++++..++++...... .|-+ -|...+..+........ +. ....-..
T Consensus 320 ~~p~vlel-e~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~---Gs-----~~~kl~t 390 (463)
T KOG1645|consen 320 CLPCVLEL-EPPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYF---GS-----KQTKLST 390 (463)
T ss_pred CCCccccc-CCCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeeccccc---CC-----ccccccc
Confidence 22222222 2345566666666555444433220 0000 01111111100000000 00 0000000
Q ss_pred EEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECC
Q psy9598 724 VTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDIL 795 (1915)
Q Consensus 724 V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~ 795 (1915)
-..+.-.++.++|+..+...+.+.+||..+++.++++.-. .+|..++....++.-++..-.|..++||...
T Consensus 391 ~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~evvQ~l~~~-epv~Dicp~~~n~~syLa~LTd~~v~Iyk~e 461 (463)
T KOG1645|consen 391 TQAIRAVEDNNYIVVVGDSTNELILQDPHSFEVVQTLALS-EPVLDICPNDTNGSSYLALLTDDRVHIYKNE 461 (463)
T ss_pred ccceeccccccEEEEecCCcceeEEeccchhheeeecccC-cceeecceeecCCcchhhheecceEEEEecC
Confidence 1112223555777766655788999999999999998754 6788887665444434444456688887654
|
|
| >KOG0955|consensus | Back alignment and domain information |
|---|
Probab=98.61 E-value=4e-08 Score=130.09 Aligned_cols=105 Identities=27% Similarity=0.381 Sum_probs=96.7
Q ss_pred chhhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCccccccCccchhhHHhhhcCCCCCCHHHHHHHHHHHHHHhhhhcC
Q psy9598 1530 PFNWKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQ 1609 (1915)
Q Consensus 1530 ~~~~~~~~~~ll~~l~~~~~s~~F~~pv~~~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~Dv~lif~Na~~yN~ 1609 (1915)
...+++.++.+|..|...+....|..|||..++|||.++|++||||.||+.++..+.|.++++|..|+.||..||+.||.
T Consensus 563 l~p~~kLl~~~l~~lq~kD~~gif~~pvd~~e~pdy~~iik~pmd~~t~~~kl~s~~y~tle~ieed~~l~~~nc~~yn~ 642 (1051)
T KOG0955|consen 563 LNPFKKLLQKSLDKLQKKDSYGIFAEPVDPSELPDYIDIIKKPMDFFTMRLKLESGAYSTLEPIEEDVNLIVSNCMEYNA 642 (1051)
T ss_pred CchHHHHHHHHHHHhhcccccCceeeccChhhcccHHHHhcCccchhhhhhhccccchhhhhHHHHhHhHhHhHHHHhhc
Confidence 34566778899999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy9598 1610 NKRSKIYIMTTRLSEFAEEHLRRLTV 1635 (1915)
Q Consensus 1610 ~~~s~i~~~a~~l~~~f~~~~~~~~~ 1635 (1915)
-+ ..+|..|..|++.....+.....
T Consensus 643 ~d-tv~~r~av~~~e~~~~~~~~ark 667 (1051)
T KOG0955|consen 643 KD-TVYYRAAVRLRELIKKDFRNARK 667 (1051)
T ss_pred cC-eehHhhhHHHHhhhhhHHHhccc
Confidence 66 99999999999988777766543
|
|
| >KOG1832|consensus | Back alignment and domain information |
|---|
Probab=98.57 E-value=5.3e-08 Score=120.73 Aligned_cols=224 Identities=16% Similarity=0.154 Sum_probs=152.0
Q ss_pred cEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEe-CCC-
Q psy9598 509 KLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTS-TDG- 586 (1915)
Q Consensus 509 ~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs-~Dg- 586 (1915)
+...+|+.|+...+|++|+.+.++|+.|+..|.|+++++.+|.......+|...|+-|.-+-+ +.++++.+ ...
T Consensus 1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~d----gs~~Ltsss~S~P 1167 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVD----GSTQLTSSSSSSP 1167 (1516)
T ss_pred ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCC----cceeeeeccccCc
Confidence 445677889999999999999999999999999999999999999999999999999887764 34444443 333
Q ss_pred eEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeE-EeccCCCC
Q psy9598 587 CIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGIL-EVEEHSDK 665 (1915)
Q Consensus 587 tI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~-~l~~h~~~ 665 (1915)
-..+|++..-. ...+.| ..-.|+.|+....+-+.|+.-..+.|||+.+........ ...+....
T Consensus 1168 lsaLW~~~s~~-------~~~Hsf--------~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~ 1232 (1516)
T KOG1832|consen 1168 LSALWDASSTG-------GPRHSF--------DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYS 1232 (1516)
T ss_pred hHHHhcccccc-------Cccccc--------cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhh
Confidence 56789876421 111111 234578888776666666666788999996543222211 11122223
Q ss_pred eeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCe
Q psy9598 666 VDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQ 745 (1915)
Q Consensus 666 V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~ 745 (1915)
-++..|+|+..+++- || .+||++..+.++.+-.+. .-..-.|+|.|.-+++-+.
T Consensus 1233 ~n~a~FsP~D~LIln---dG--vLWDvR~~~aIh~FD~ft-----------------~~~~G~FHP~g~eVIINSE---- 1286 (1516)
T KOG1832|consen 1233 NNLAHFSPCDTLILN---DG--VLWDVRIPEAIHRFDQFT-----------------DYGGGGFHPSGNEVIINSE---- 1286 (1516)
T ss_pred ccccccCCCcceEee---Cc--eeeeeccHHHHhhhhhhe-----------------ecccccccCCCceEEeech----
Confidence 367789999887663 44 389998765333221111 1122358999999988765
Q ss_pred EEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEE
Q psy9598 746 IKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLS 782 (1915)
Q Consensus 746 I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaS 782 (1915)
|||++|.++++....-. -..|.|+. .|.++..
T Consensus 1287 --IwD~RTF~lLh~VP~Ld--qc~VtFNs-tG~VmYa 1318 (1516)
T KOG1832|consen 1287 --IWDMRTFKLLHSVPSLD--QCAVTFNS-TGDVMYA 1318 (1516)
T ss_pred --hhhhHHHHHHhcCcccc--ceEEEecc-Cccchhh
Confidence 89999999888765433 35667777 6665543
|
|
| >KOG3914|consensus | Back alignment and domain information |
|---|
Probab=98.57 E-value=7.3e-07 Score=104.41 Aligned_cols=164 Identities=16% Similarity=0.149 Sum_probs=112.9
Q ss_pred eEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEe---CCCcEEEEEccCCce
Q psy9598 621 ILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGS---RDGTALIWYYKCSQW 697 (1915)
Q Consensus 621 V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs---~DG~I~IWDl~~~~~ 697 (1915)
+..+.+++.+.+||++..+....++++..............-...-+++.|..+......+. ....+.+|....+.
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~- 143 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR- 143 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccC-
Confidence 34556788899999998888888888754433222222222222333444444444444433 33344444333222
Q ss_pred EEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEee-CCCCCeEEEEEccCC
Q psy9598 698 RFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLK-GHTNEVFVLESHPFD 776 (1915)
Q Consensus 698 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~-gH~~~V~sl~~sp~d 776 (1915)
.....+|-..++.|+|+||+++|+++.. |..|+|-.+.....+..|. ||..-|..++.-+
T Consensus 144 ----------------~~~~lGhvSml~dVavS~D~~~IitaDR-DEkIRvs~ypa~f~IesfclGH~eFVS~isl~~-- 204 (390)
T KOG3914|consen 144 ----------------CEPILGHVSMLLDVAVSPDDQFIITADR-DEKIRVSRYPATFVIESFCLGHKEFVSTISLTD-- 204 (390)
T ss_pred ----------------cchhhhhhhhhheeeecCCCCEEEEecC-CceEEEEecCcccchhhhccccHhheeeeeecc--
Confidence 1234568889999999999999999998 9999998877666666654 8999999999976
Q ss_pred CCEEEEEecCceEEEEECCCCccccceeee
Q psy9598 777 SRVLLSAGHDGLIIIWDILSSKQRGYKWFH 806 (1915)
Q Consensus 777 g~~LaSgs~DG~I~IWdl~s~~~~~~~~~~ 806 (1915)
+..|++||.|++|++||+.+|+. +.++.
T Consensus 205 ~~~LlS~sGD~tlr~Wd~~sgk~--L~t~d 232 (390)
T KOG3914|consen 205 NYLLLSGSGDKTLRLWDITSGKL--LDTCD 232 (390)
T ss_pred CceeeecCCCCcEEEEecccCCc--ccccc
Confidence 56699999999999999999998 55443
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=98.50 E-value=4.5e-05 Score=90.30 Aligned_cols=146 Identities=16% Similarity=0.208 Sum_probs=115.7
Q ss_pred cCCCCcEEEEEEcCCCCEEEEEECCC-cEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCc
Q psy9598 473 LGHLSAVFCVLFDKLGEVIVTGADDL-LIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLA 551 (1915)
Q Consensus 473 ~gH~~~V~~vafspdg~~LaTGs~Dg-~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~ 551 (1915)
.||.+.|.-..+.-++.-++.|..|| .|-|+|..+++. ..+...-+.|.++..+++|++++.+.....|.+.|+.+|.
T Consensus 356 v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngn 434 (668)
T COG4946 356 VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGN 434 (668)
T ss_pred cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceE-EEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCC
Confidence 48999999999998888999999999 899999977754 4455667889999999999999999988999999999998
Q ss_pred eEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCC----eEEEEecccCccccceeccCccccccccCCCCCceEEEEEC
Q psy9598 552 PISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDG----CIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFS 627 (1915)
Q Consensus 552 ~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~Dg----tI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs 627 (1915)
....-+...+-|+.+.|+|++ .+|+.+--+| .|+++|+.+++...... + .+.=.+-+|.
T Consensus 435 v~~idkS~~~lItdf~~~~ns----r~iAYafP~gy~tq~Iklydm~~~Kiy~vTT---~----------ta~DfsPaFD 497 (668)
T COG4946 435 VRLIDKSEYGLITDFDWHPNS----RWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT---P----------TAYDFSPAFD 497 (668)
T ss_pred eeEecccccceeEEEEEcCCc----eeEEEecCcceeeeeEEEEecCCCeEEEecC---C----------cccccCcccC
Confidence 877667778899999999954 8999887666 68999998875321111 1 1223455778
Q ss_pred CCCcEEEEE
Q psy9598 628 PGGLFLATG 636 (1915)
Q Consensus 628 pdg~~Lasg 636 (1915)
|+|++|..-
T Consensus 498 ~d~ryLYfL 506 (668)
T COG4946 498 PDGRYLYFL 506 (668)
T ss_pred CCCcEEEEE
Confidence 888776544
|
|
| >KOG4532|consensus | Back alignment and domain information |
|---|
Probab=98.44 E-value=2.2e-05 Score=87.18 Aligned_cols=242 Identities=9% Similarity=0.050 Sum_probs=156.0
Q ss_pred CCEEEEEECCCcEEEEECCCCcE-EEEEeCCCCCEEEEEEeC-CCCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEE
Q psy9598 488 GEVIVTGADDLLIKLWRARDGKL-LATLRGCSGEISDIAIDN-RNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITG 565 (1915)
Q Consensus 488 g~~LaTGs~Dg~I~IWd~~tg~~-~~~l~gH~~~I~~Lafsp-dg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~s 565 (1915)
-.+||.||.-|...+|...+... +.....|...|+-+.=.- ...-+..++.|.++++.++..+.....+....-.+++
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns 163 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNS 163 (344)
T ss_pred ccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccceee
Confidence 46899999999999999986643 333344444333221111 1224666788999999988765544333222234789
Q ss_pred EEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEE
Q psy9598 566 VNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVY 645 (1915)
Q Consensus 566 l~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~Iw 645 (1915)
+++++ ++.++++.+....|.+|.+.......... ...+....-.|.+|+.....+|++..||++.||
T Consensus 164 ~~~sn----d~~~~~~Vgds~~Vf~y~id~~sey~~~~---------~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~ 230 (344)
T KOG4532|consen 164 LHYSN----DPSWGSSVGDSRRVFRYAIDDESEYIENI---------YEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIY 230 (344)
T ss_pred eEEcC----CCceEEEecCCCcceEEEeCCccceeeee---------EecccCCCceeeeeccCcceEEEEecCCcEEEE
Confidence 99998 45899999999999999887653211111 111223445788999999999999999999999
Q ss_pred EecCCCCCceeE--EeccCCCCeeEEEEcCCCC--EEEEEeCCCcEEEEEccCCceEEeeecccccCCCCcccccccccc
Q psy9598 646 KMDGVDSPLGIL--EVEEHSDKVDSIQWSHSHL--RFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKK 721 (1915)
Q Consensus 646 Dl~~~~~~~~i~--~l~~h~~~V~sl~fspdg~--~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 721 (1915)
|++....+.... +-..|.+.|..+.|++.|. +|+..-.-+.+.+.|+++..-.......... ......
T Consensus 231 DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~--------~~~~~t 302 (344)
T KOG4532|consen 231 DVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDV--------ERKHNT 302 (344)
T ss_pred EecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccc--------cccccc
Confidence 997655443322 2356899999999998664 4555556678999999987644333211111 111122
Q ss_pred ccEEEEEECCCCCEEEEEEecCCeEEEEECC
Q psy9598 722 IKVTMVAWDASDRWVITAINFNFQIKIWDAF 752 (1915)
Q Consensus 722 ~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~ 752 (1915)
..|...+|+.++.-+.++.. -.+.=|++.
T Consensus 303 q~ifgt~f~~~n~s~~v~~e--~~~ae~ni~ 331 (344)
T KOG4532|consen 303 QHIFGTNFNNENESNDVKNE--LQGAEYNIL 331 (344)
T ss_pred cccccccccCCCcccccccc--hhhheeecc
Confidence 34777778777766666553 234445543
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=0.00021 Score=90.71 Aligned_cols=269 Identities=12% Similarity=0.037 Sum_probs=159.8
Q ss_pred CCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEE-EEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEE-
Q psy9598 488 GEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISD-IAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITG- 565 (1915)
Q Consensus 488 g~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~-Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~s- 565 (1915)
+..|+.++.+|.|..+|..+|+.+....... .+.+ ..+. +..|+.++.++.|..+|..+|+.+..+......+..
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~ssP~v~--~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~ 196 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAG-EALSRPVVS--DGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLR 196 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCCC-ceecCCEEE--CCEEEEECCCCEEEEEEccCCCEeeeecCCCCccccc
Confidence 5677888899999999999999988776433 2222 1222 346667788999999999999998877543211100
Q ss_pred EEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECC--CCcEEEEEeCCCeEE
Q psy9598 566 VNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSP--GGLFLATGSGDHHVR 643 (1915)
Q Consensus 566 l~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fsp--dg~~Lasgs~Dg~I~ 643 (1915)
..-+|.- ....++.++.+|.+..+|..++..........+...... .....+..+| .+..|++++.+|.+.
T Consensus 197 ~~~sP~v--~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~-----~~~~~~~~sP~v~~~~vy~~~~~g~l~ 269 (394)
T PRK11138 197 GESAPAT--AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEI-----DRLVDVDTTPVVVGGVVYALAYNGNLV 269 (394)
T ss_pred CCCCCEE--ECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccch-----hcccccCCCcEEECCEEEEEEcCCeEE
Confidence 0112221 124577788899999999998876554433211100000 0000111112 244677777889999
Q ss_pred EEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCcccccccccccc
Q psy9598 644 VYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIK 723 (1915)
Q Consensus 644 IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 723 (1915)
.+|+.+. ..+.... ......+.. .+..|+.++.+|.+..+|..+++.+....... ...
T Consensus 270 ald~~tG---~~~W~~~--~~~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~---------------~~~ 327 (394)
T PRK11138 270 ALDLRSG---QIVWKRE--YGSVNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWSQSDLL---------------HRL 327 (394)
T ss_pred EEECCCC---CEEEeec--CCCccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEcccccC---------------CCc
Confidence 8888432 2222211 111112222 45678888899999999998886432110000 000
Q ss_pred EEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCCCeEE-EEEccCCCCEEEEEecCceEEEEEC
Q psy9598 724 VTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFV-LESHPFDSRVLLSAGHDGLIIIWDI 794 (1915)
Q Consensus 724 V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~s-l~~sp~dg~~LaSgs~DG~I~IWdl 794 (1915)
..+..+ .+.+|+++.. +|.|.++|..+|+.+.....+...+.+ ..+ .+..|+.++.||.|+.+++
T Consensus 328 ~~sp~v--~~g~l~v~~~-~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~---~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 328 LTAPVL--YNGYLVVGDS-EGYLHWINREDGRFVAQQKVDSSGFLSEPVV---ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred ccCCEE--ECCEEEEEeC-CCEEEEEECCCCCEEEEEEcCCCcceeCCEE---ECCEEEEEeCCceEEEEeC
Confidence 111111 2566777777 999999999999998887654333332 222 2346888899999988764
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.42 E-value=0.00023 Score=84.00 Aligned_cols=220 Identities=13% Similarity=0.020 Sum_probs=139.7
Q ss_pred EEEEcC-CCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEe-CCCCEEEEEeCCCcEEEEECCCCceEEEeec
Q psy9598 481 CVLFDK-LGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAID-NRNILLAAGTVDKTIRIWNLQTLAPISVLVG 558 (1915)
Q Consensus 481 ~vafsp-dg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafs-pdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~ 558 (1915)
+++|.+ +|.++++-...+.|..|+..++.... +.... ...+++. +++.+++ +... .+.++|+.++.....+..
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g~l~v-~~~~-~~~~~d~~~g~~~~~~~~ 78 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDGRLYV-ADSG-GIAVVDPDTGKVTVLADL 78 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTSEEEE-EETT-CEEEEETTTTEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCCEEEE-EEcC-ceEEEecCCCcEEEEeec
Confidence 678997 77777887788999999998876543 22222 7778888 6655544 4444 456669998865444332
Q ss_pred -----CCCCeEEEEeccCccCCCcEEEEEeCC--------CeEEEEecccCccccceeccCccccccccCCCCCceEEEE
Q psy9598 559 -----HQGIITGVNFCPLEVNGFNYLASTSTD--------GCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSS 625 (1915)
Q Consensus 559 -----h~~~V~sl~fsp~~~~d~~~L~sgs~D--------gtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~ 625 (1915)
.....+.+++.+. +++.++.... |.|..++.. +.. ..... .-...+.++
T Consensus 79 ~~~~~~~~~~ND~~vd~~----G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~--~~~~~-----------~~~~pNGi~ 140 (246)
T PF08450_consen 79 PDGGVPFNRPNDVAVDPD----GNLYVTDSGGGGASGIDPGSVYRIDPD-GKV--TVVAD-----------GLGFPNGIA 140 (246)
T ss_dssp ETTCSCTEEEEEEEE-TT----S-EEEEEECCBCTTCGGSEEEEEEETT-SEE--EEEEE-----------EESSEEEEE
T ss_pred cCCCcccCCCceEEEcCC----CCEEEEecCCCccccccccceEEECCC-CeE--EEEec-----------CcccccceE
Confidence 3456789999984 4666665543 446556555 221 11111 114468999
Q ss_pred ECCCCcEEE-EEeCCCeEEEEEecCCCC-C---ceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEe
Q psy9598 626 FSPGGLFLA-TGSGDHHVRVYKMDGVDS-P---LGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFI 700 (1915)
Q Consensus 626 fspdg~~La-sgs~Dg~I~IwDl~~~~~-~---~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~ 700 (1915)
|+|+++.|+ +-+..+.|..|++..... . ..+..+....+....+++..+|++.++....+.|.+++.. ++....
T Consensus 141 ~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~ 219 (246)
T PF08450_consen 141 FSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLRE 219 (246)
T ss_dssp EETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEE
T ss_pred ECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEE
Confidence 999998765 566788899999854332 1 1222233333458899999999988888889999999987 543322
Q ss_pred eecccccCCCCccccccccccccEEEEEE-CCCCCEEEEEE
Q psy9598 701 RLDMNTCLPHTKETSDETNKKIKVTMVAW-DASDRWVITAI 740 (1915)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~~V~~va~-spdg~~L~t~s 740 (1915)
.. .....+++++| .++...|++++
T Consensus 220 i~----------------~p~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 220 IE----------------LPVPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp EE-----------------SSSSEEEEEEESTTSSEEEEEE
T ss_pred Ec----------------CCCCCEEEEEEECCCCCEEEEEe
Confidence 11 01236788999 46767776654
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG3914|consensus | Back alignment and domain information |
|---|
Probab=98.40 E-value=3.7e-06 Score=98.67 Aligned_cols=158 Identities=17% Similarity=0.189 Sum_probs=99.5
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEECCCCce----EEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCc
Q psy9598 522 SDIAIDNRNILLAAGTVDKTIRIWNLQTLAP----ISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDI 597 (1915)
Q Consensus 522 ~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~----~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~ 597 (1915)
..+..++.+++||.+..+....++++..... +.... -...-+++.|..... .......++....+.+|....+.
T Consensus 66 ~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~~~~-sv~v~dkagD~~~~di~s~~~~~ 143 (390)
T KOG3914|consen 66 ALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIREDT-SVLVADKAGDVYSFDILSADSGR 143 (390)
T ss_pred cccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeeeccc-eEEEEeecCCceeeeeecccccC
Confidence 3345567778888887777776777654332 11111 112223333433210 01112222333444444433221
Q ss_pred cccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEE-eccCCCCeeEEEEcCCCC
Q psy9598 598 DISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILE-VEEHSDKVDSIQWSHSHL 676 (1915)
Q Consensus 598 ~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~-l~~h~~~V~sl~fspdg~ 676 (1915)
.....+|-..++.++|+||+.+|+++..|..|+|-..... ..+.. .-||...|..++.-++ .
T Consensus 144 -------------~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~---f~IesfclGH~eFVS~isl~~~-~ 206 (390)
T KOG3914|consen 144 -------------CEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPAT---FVIESFCLGHKEFVSTISLTDN-Y 206 (390)
T ss_pred -------------cchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcc---cchhhhccccHhheeeeeeccC-c
Confidence 2233467788999999999999999999999999877322 22222 3579999999998755 4
Q ss_pred EEEEEeCCCcEEEEEccCCceE
Q psy9598 677 RFVSGSRDGTALIWYYKCSQWR 698 (1915)
Q Consensus 677 ~L~sgs~DG~I~IWDl~~~~~~ 698 (1915)
.|++||.|++|++||+.++...
T Consensus 207 ~LlS~sGD~tlr~Wd~~sgk~L 228 (390)
T KOG3914|consen 207 LLLSGSGDKTLRLWDITSGKLL 228 (390)
T ss_pred eeeecCCCCcEEEEecccCCcc
Confidence 5999999999999999999865
|
|
| >KOG0882|consensus | Back alignment and domain information |
|---|
Probab=98.39 E-value=3.7e-06 Score=98.99 Aligned_cols=261 Identities=15% Similarity=0.085 Sum_probs=168.9
Q ss_pred CCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCC--C-ceEEEeecCCCCeEEEEeccCccCCCcEEEEEeC-CCeEEEEe
Q psy9598 517 CSGEISDIAIDNRNILLAAGTVDKTIRIWNLQT--L-APISVLVGHQGIITGVNFCPLEVNGFNYLASTST-DGCIGFWK 592 (1915)
Q Consensus 517 H~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~t--g-~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~-DgtI~iWD 592 (1915)
|...|+.+..+. ..++.+++.||.++.|--.. | ..+..+..|.+.|.+++.+- ++.++.|++. |..++++|
T Consensus 8 hrd~i~hv~~tk-a~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~----dg~L~~Sv~d~Dhs~KvfD 82 (558)
T KOG0882|consen 8 HRDVITHVFPTK-AKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSY----DGWLFRSVEDPDHSVKVFD 82 (558)
T ss_pred ccceeeeEeeeh-hheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccc----cceeEeeccCcccceeEEE
Confidence 777787776554 45999999999999997643 1 23445667888898888886 4578888777 99999999
Q ss_pred cccCccccceeccCccccccccCCCCCceEEEEECCCC--cEEEEE-eCCCeEEEEEecCCCCCceeEEeccCCCCeeEE
Q psy9598 593 YKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGG--LFLATG-SGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSI 669 (1915)
Q Consensus 593 l~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg--~~Lasg-s~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl 669 (1915)
+..-..+.-+..... + +.+ ++..++.. ..|+++ -.+|.|.|+|-.+. .......-.-|..+|.++
T Consensus 83 vEn~DminmiKL~~l--------P--g~a-~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d-~~q~~~fkklH~sPV~~i 150 (558)
T KOG0882|consen 83 VENFDMINMIKLVDL--------P--GFA-EWVTSKGDKISLIAVSLFKSGKIFVVDGFGD-FCQDGYFKKLHFSPVKKI 150 (558)
T ss_pred eeccchhhhcccccC--------C--Cce-EEecCCCCeeeeEEeecccCCCcEEECCcCC-cCccceecccccCceEEE
Confidence 876543322222111 1 112 12222221 133333 35788999997433 333344456699999999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEEccC-CceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEE
Q psy9598 670 QWSHSHLRFVSGSRDGTALIWYYKC-SQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKI 748 (1915)
Q Consensus 670 ~fspdg~~L~sgs~DG~I~IWDl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~v 748 (1915)
.+.+.+..+++....|.|..|.... .+... ........................++.|+|+|..+.+-+. |..|++
T Consensus 151 ~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr--~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~-DrkVR~ 227 (558)
T KOG0882|consen 151 RYNQAGDSAVSIDISGMVEYWSAEGPFQFPR--TNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNP-DRKVRG 227 (558)
T ss_pred EeeccccceeeccccceeEeecCCCcccCcc--ccccccccccchhhcccccccCccceEEccccCcccccCc-ccEEEE
Confidence 9999999999999999999998763 11100 0011111111122233345567789999999999998887 999999
Q ss_pred EECCCCceEEEeeC--------------------------------CCC-CeEEEEEccCCCCEEEEEecCceEEEEECC
Q psy9598 749 WDAFNGDLVQVLKG--------------------------------HTN-EVFVLESHPFDSRVLLSAGHDGLIIIWDIL 795 (1915)
Q Consensus 749 wD~~tg~~i~~l~g--------------------------------H~~-~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~ 795 (1915)
+++.+|++++.+.. |.. .-+.++|.. .+++|+-|+-=| |+|.++.
T Consensus 228 F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fde-s~~flly~t~~g-ikvin~~ 305 (558)
T KOG0882|consen 228 FVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDE-SGNFLLYGTILG-IKVINLD 305 (558)
T ss_pred EEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcC-CCCEEEeeccee-EEEEEee
Confidence 99999987665431 111 113344555 667777666543 6677777
Q ss_pred CCcc
Q psy9598 796 SSKQ 799 (1915)
Q Consensus 796 s~~~ 799 (1915)
++.+
T Consensus 306 tn~v 309 (558)
T KOG0882|consen 306 TNTV 309 (558)
T ss_pred cCeE
Confidence 6665
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.00011 Score=83.64 Aligned_cols=247 Identities=13% Similarity=0.125 Sum_probs=140.1
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEECCCC--cEEEEEeCC---CCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEE
Q psy9598 481 CVLFDKLGEVIVTGADDLLIKLWRARDG--KLLATLRGC---SGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISV 555 (1915)
Q Consensus 481 ~vafspdg~~LaTGs~Dg~I~IWd~~tg--~~~~~l~gH---~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~ 555 (1915)
.++.+.+|++||.- .|..|-|=...+. ..+.....+ .-.=.-|+||||+.+||.+...|+|+|+|+.. ..+..
T Consensus 2 ~~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~ 79 (282)
T PF15492_consen 2 HLALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFV 79 (282)
T ss_pred ceeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEE
Confidence 36778899888876 5667777766543 233333322 22346799999999999999999999999975 34444
Q ss_pred eec-------CCCCeEEEEeccCccCC--CcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEE
Q psy9598 556 LVG-------HQGIITGVNFCPLEVNG--FNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSF 626 (1915)
Q Consensus 556 l~~-------h~~~V~sl~fsp~~~~d--~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~f 626 (1915)
+.. -...|.++.|.+..... ...|++-...|.++-|-+..+.... +...+.+ .........|.++.+
T Consensus 80 I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~---y~e~hsf-sf~~~yp~Gi~~~vy 155 (282)
T PF15492_consen 80 IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQG---YQENHSF-SFSSHYPHGINSAVY 155 (282)
T ss_pred cCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCc---ceeeEEE-EecccCCCceeEEEE
Confidence 432 22567778887643111 1256667777888777654321100 0000000 001122467999999
Q ss_pred CCCCcEEEEEeCCCeE-EEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCE--EEEEeCCCc------EEEEEccCCce
Q psy9598 627 SPGGLFLATGSGDHHV-RVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLR--FVSGSRDGT------ALIWYYKCSQW 697 (1915)
Q Consensus 627 spdg~~Lasgs~Dg~I-~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~--L~sgs~DG~------I~IWDl~~~~~ 697 (1915)
+|..++|++||....= ..+ .+....+++-.+-.+..+ .++...|+. ..+|.+-+..
T Consensus 156 ~p~h~LLlVgG~~~~~~~~s--------------~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~- 220 (282)
T PF15492_consen 156 HPKHRLLLVGGCEQNQDGMS--------------KASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFK- 220 (282)
T ss_pred cCCCCEEEEeccCCCCCccc--------------cccccCceEEEEcCCCCcEEEccccCccccccccccceeecccee-
Confidence 9998888887653210 000 011111121111111110 112222211 1122211110
Q ss_pred EEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCC
Q psy9598 698 RFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHT 764 (1915)
Q Consensus 698 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~ 764 (1915)
...........|..+.+||||..|++... +|.|.+|++.+..+...+..+.
T Consensus 221 ---------------~fs~~~~~~d~i~kmSlSPdg~~La~ih~-sG~lsLW~iPsL~~~~~W~~~e 271 (282)
T PF15492_consen 221 ---------------FFSRQGQEQDGIFKMSLSPDGSLLACIHF-SGSLSLWEIPSLRLQRSWKQDE 271 (282)
T ss_pred ---------------eeeccccCCCceEEEEECCCCCEEEEEEc-CCeEEEEecCcchhhcccchhh
Confidence 00111234677999999999999999998 9999999999887777765443
|
|
| >KOG1275|consensus | Back alignment and domain information |
|---|
Probab=98.36 E-value=6.6e-06 Score=104.14 Aligned_cols=184 Identities=15% Similarity=0.180 Sum_probs=141.4
Q ss_pred CCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEE
Q psy9598 487 LGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGV 566 (1915)
Q Consensus 487 dg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl 566 (1915)
++..++.|+....+..+|+.+++......-..+.|+-|. .++++|++|...|+|.+-|..+.+.++++..|++.|.++
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDf 223 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMR--YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDF 223 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEE--ecCcEEEeecccceEEeecCCcCceeeeeeccccceeee
Confidence 355677777777899999999988887765565666665 457899999999999999999999999999999999988
Q ss_pred EeccCccCCCcEEEEEeC---------CCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCC-CcEEEEE
Q psy9598 567 NFCPLEVNGFNYLASTST---------DGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPG-GLFLATG 636 (1915)
Q Consensus 567 ~fsp~~~~d~~~L~sgs~---------DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspd-g~~Lasg 636 (1915)
... |++|++||. |.-|++||++....+..+.+.... .-+.|.|. ...++++
T Consensus 224 Dv~------GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-------------~flrf~Psl~t~~~V~ 284 (1118)
T KOG1275|consen 224 DVQ------GNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-------------QFLRFHPSLTTRLAVT 284 (1118)
T ss_pred ecc------CCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-------------hhhhhcccccceEEEE
Confidence 775 478888874 456899999988766655554221 22445553 3467788
Q ss_pred eCCCeEEEEEecCCCCC-ceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEE
Q psy9598 637 SGDHHVRVYKMDGVDSP-LGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWY 691 (1915)
Q Consensus 637 s~Dg~I~IwDl~~~~~~-~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWD 691 (1915)
+..|...+-|..+...+ ..+..+......+.+++++++|..++.|..+|.|.+|.
T Consensus 285 S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 285 SQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred ecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 88899999884332332 34444555566699999999999999999999999996
|
|
| >KOG1920|consensus | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.00026 Score=93.23 Aligned_cols=205 Identities=16% Similarity=0.168 Sum_probs=140.2
Q ss_pred CcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEEC----CC---
Q psy9598 477 SAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNL----QT--- 549 (1915)
Q Consensus 477 ~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl----~t--- 549 (1915)
+.|.++.|..++.-|+.+..+|.|.+-|..+..... .....+.|.+++||||+.+|+..+..++|.+-.- -.
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~ei-vg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~ 147 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEI-VGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKP 147 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccceee-eeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccc
Confidence 689999999999999999999999999988765432 2234678999999999999999988888776432 10
Q ss_pred ----------------CceEEEeecCCC---------------------CeEEEEeccCccCCCcEEEEE-----eCCCe
Q psy9598 550 ----------------LAPISVLVGHQG---------------------IITGVNFCPLEVNGFNYLAST-----STDGC 587 (1915)
Q Consensus 550 ----------------g~~~~~l~~h~~---------------------~V~sl~fsp~~~~d~~~L~sg-----s~Dgt 587 (1915)
|+.-..|.|..+ .=++|.|-- +|.++++. ..-..
T Consensus 148 L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRg----Dg~~fAVs~~~~~~~~Rk 223 (1265)
T KOG1920|consen 148 LDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRG----DGEYFAVSFVESETGTRK 223 (1265)
T ss_pred cccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEcc----CCcEEEEEEEeccCCcee
Confidence 111112222111 123477764 66888873 22378
Q ss_pred EEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEe---CCCeEEEEEecCCCCCceeEEeccCCC
Q psy9598 588 IGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGS---GDHHVRVYKMDGVDSPLGILEVEEHSD 664 (1915)
Q Consensus 588 I~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs---~Dg~I~IwDl~~~~~~~~i~~l~~h~~ 664 (1915)
|+|||-. +.. ... .. +..+.-.+++|-|.|.++++-. .|+.|.+|.-++.........+.....
T Consensus 224 irV~drE-g~L-ns~--se---------~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~ 290 (1265)
T KOG1920|consen 224 IRVYDRE-GAL-NST--SE---------PVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEK 290 (1265)
T ss_pred EEEeccc-chh-hcc--cC---------cccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCccccc
Confidence 9999976 321 111 01 1123346899999999988753 456799998766555544444444455
Q ss_pred CeeEEEEcCCCCEEEE---EeCCCcEEEEEccCCceEE
Q psy9598 665 KVDSIQWSHSHLRFVS---GSRDGTALIWYYKCSQWRF 699 (1915)
Q Consensus 665 ~V~sl~fspdg~~L~s---gs~DG~I~IWDl~~~~~~~ 699 (1915)
.|..++|+.++..|++ +.....|++|-+.+..|-.
T Consensus 291 ~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYL 328 (1265)
T KOG1920|consen 291 EVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYL 328 (1265)
T ss_pred chheeeecCCCCceeeeecccccceEEEEEecCeEEEE
Confidence 5999999999998887 4555559999888877654
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.00026 Score=80.77 Aligned_cols=205 Identities=14% Similarity=0.161 Sum_probs=116.5
Q ss_pred CceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEec-------cCCCCeeEEEEcCCC------CEEEEEeCCC
Q psy9598 619 AHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVE-------EHSDKVDSIQWSHSH------LRFVSGSRDG 685 (1915)
Q Consensus 619 ~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~-------~h~~~V~sl~fspdg------~~L~sgs~DG 685 (1915)
-+-.-++||||+.+||.+...|+|++||+.+.. ++.+. .....|.++.|.... ..|++-...|
T Consensus 44 PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~----lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G 119 (282)
T PF15492_consen 44 PQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSE----LFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRG 119 (282)
T ss_pred chheEEEECCCCcEEEEEcCCCeEEEEecccce----eEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccc
Confidence 445789999999999999999999999995321 22221 123456677775432 2466666777
Q ss_pred cEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCC
Q psy9598 686 TALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTN 765 (1915)
Q Consensus 686 ~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~ 765 (1915)
.++-|-+..+..... ...............|++++++|..+.|++||.....-..+ .+...
T Consensus 120 ~L~Sy~vs~gt~q~y--------~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s-----------~a~~~ 180 (282)
T PF15492_consen 120 QLRSYLVSVGTNQGY--------QENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMS-----------KASSC 180 (282)
T ss_pred eeeeEEEEcccCCcc--------eeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccc-----------ccccc
Confidence 777775532210000 00000111222467899999999999999887633211010 01111
Q ss_pred CeEEEEEccCCCCEE-EEEecCce------EEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEEeCCCeE
Q psy9598 766 EVFVLESHPFDSRVL-LSAGHDGL------IIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHL 838 (1915)
Q Consensus 766 ~V~sl~~sp~dg~~L-aSgs~DG~------I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~dG~I 838 (1915)
.+++-.+-.....+. ++...|+. ..+|.+-+... +. ..++....|..|..||||.+||+...+|.|
T Consensus 181 GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~-----fs--~~~~~~d~i~kmSlSPdg~~La~ih~sG~l 253 (282)
T PF15492_consen 181 GLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKF-----FS--RQGQEQDGIFKMSLSPDGSLLACIHFSGSL 253 (282)
T ss_pred CceEEEEcCCCCcEEEccccCccccccccccceeeccceee-----ee--ccccCCCceEEEEECCCCCEEEEEEcCCeE
Confidence 222222211111222 12222221 23343322111 11 123345789999999999999999999999
Q ss_pred EEEeCCCCcccccCC
Q psy9598 839 LVYGLGGFKRPQNIP 853 (1915)
Q Consensus 839 ~Iwdl~s~~~~~~l~ 853 (1915)
.||++.+-.......
T Consensus 254 sLW~iPsL~~~~~W~ 268 (282)
T PF15492_consen 254 SLWEIPSLRLQRSWK 268 (282)
T ss_pred EEEecCcchhhcccc
Confidence 999999876554443
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.00021 Score=90.65 Aligned_cols=211 Identities=10% Similarity=-0.050 Sum_probs=121.3
Q ss_pred cEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCE-EEEEeC---CCcEEEEECCCCceEEEeecCCCCeEEEEeccCccC
Q psy9598 499 LIKLWRARDGKLLATLRGCSGEISDIAIDNRNIL-LAAGTV---DKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVN 574 (1915)
Q Consensus 499 ~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~-LaSgs~---DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~ 574 (1915)
.|.+=|..... ...+... +.+....|+|||+. ++..+. +..|.++|+.+++...... ..+.+....|+|++
T Consensus 170 ~l~~~d~dg~~-~~~~~~~-~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG-- 244 (419)
T PRK04043 170 NIVLADYTLTY-QKVIVKG-GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDG-- 244 (419)
T ss_pred eEEEECCCCCc-eeEEccC-CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCC--
Confidence 45555553333 3333323 37788999999984 554443 3569999999887655443 55566778899953
Q ss_pred CCcEEEEEeCC--CeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeC-CC--eEEEEEecC
Q psy9598 575 GFNYLASTSTD--GCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSG-DH--HVRVYKMDG 649 (1915)
Q Consensus 575 d~~~L~sgs~D--gtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~-Dg--~I~IwDl~~ 649 (1915)
..++++.+.+ ..|.++|+.++... .+. .+........|+|||+.|+..+. .| .|.++|+.+
T Consensus 245 -~~la~~~~~~g~~~Iy~~dl~~g~~~-~LT------------~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~ 310 (419)
T PRK04043 245 -SKLLLTMAPKGQPDIYLYDTNTKTLT-QIT------------NYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNS 310 (419)
T ss_pred -CEEEEEEccCCCcEEEEEECCCCcEE-Ecc------------cCCCccCccEECCCCCEEEEEECCCCCceEEEEECCC
Confidence 2444555544 45666677665321 111 11122234579999987776653 33 566666643
Q ss_pred CCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCC---------CcEEEEEccCCceEEeeecccccCCCCccccccccc
Q psy9598 650 VDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRD---------GTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNK 720 (1915)
Q Consensus 650 ~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~D---------G~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 720 (1915)
... ..+ ...+. ....|+|+|..|+..+.. ..|.+.|+.++....+.. .
T Consensus 311 g~~-~rl-t~~g~----~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~-----------------~ 367 (419)
T PRK04043 311 GSV-EQV-VFHGK----NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTA-----------------N 367 (419)
T ss_pred CCe-EeC-ccCCC----cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCC-----------------C
Confidence 221 122 11121 124899999988766644 256777777665432110 0
Q ss_pred cccEEEEEECCCCCEEEEEEecCC--eEEEEECC
Q psy9598 721 KIKVTMVAWDASDRWVITAINFNF--QIKIWDAF 752 (1915)
Q Consensus 721 ~~~V~~va~spdg~~L~t~s~~Dg--~I~vwD~~ 752 (1915)
.......|+|||+.|+.+....+ .|.++++.
T Consensus 368 -~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~ 400 (419)
T PRK04043 368 -GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLN 400 (419)
T ss_pred -CCcCCeEECCCCCEEEEEEccCCcEEEEEEecC
Confidence 11224789999999887765233 35566653
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.00019 Score=84.13 Aligned_cols=224 Identities=13% Similarity=0.012 Sum_probs=137.1
Q ss_pred CCCcEEEEECCCCcEEEEEeCC--CCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCcc
Q psy9598 496 DDLLIKLWRARDGKLLATLRGC--SGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEV 573 (1915)
Q Consensus 496 ~Dg~I~IWd~~tg~~~~~l~gH--~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~ 573 (1915)
.+|+|..||..+|+.+....-- .....+. ...++..|++++.++.|..||..+|+.+..+.. .+.+......
T Consensus 1 ~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~~---- 74 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAPVV---- 74 (238)
T ss_dssp -TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGEEE----
T ss_pred CCCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-cccccceeee----
Confidence 3689999999999999887531 1222222 233556777778999999999999999887765 2222111111
Q ss_pred CCCcEEEEEeCCCeEEEEecccCccccce-eccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCC
Q psy9598 574 NGFNYLASTSTDGCIGFWKYKLDIDISKT-VFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDS 652 (1915)
Q Consensus 574 ~d~~~L~sgs~DgtI~iWDl~~~~~~~~~-~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~ 652 (1915)
.+..+++++.++.|..+|..++..+... ....+.. .....+.....+..++++..++.|..+|+.+
T Consensus 75 -~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t--- 141 (238)
T PF13360_consen 75 -DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPA---------GVRSSSSPAVDGDRLYVGTSSGKLVALDPKT--- 141 (238)
T ss_dssp -ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTC---------STB--SEEEEETTEEEEEETCSEEEEEETTT---
T ss_pred -cccccccccceeeeEecccCCcceeeeecccccccc---------ccccccCceEecCEEEEEeccCcEEEEecCC---
Confidence 2356777778889999999999876553 2221100 0111222222377888888899999999843
Q ss_pred CceeEEeccCCCC----------eeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccc
Q psy9598 653 PLGILEVEEHSDK----------VDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKI 722 (1915)
Q Consensus 653 ~~~i~~l~~h~~~----------V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 722 (1915)
...+.....+... +.+-.+..++ .++.++.+|.+..+|+.+++... .....
T Consensus 142 G~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w-~~~~~----------------- 202 (238)
T PF13360_consen 142 GKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLW-SKPIS----------------- 202 (238)
T ss_dssp TEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEE-EECSS-----------------
T ss_pred CcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEE-EecCC-----------------
Confidence 3334433332211 1222233345 77777777854444999887332 11100
Q ss_pred cEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEE
Q psy9598 723 KVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQV 759 (1915)
Q Consensus 723 ~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~ 759 (1915)
.+.. .....+..|++++. ++.|.+||+.+|+.+..
T Consensus 203 ~~~~-~~~~~~~~l~~~~~-~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 203 GIYS-LPSVDGGTLYVTSS-DGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp -ECE-CEECCCTEEEEEET-TTEEEEEETTTTEEEEE
T ss_pred CccC-CceeeCCEEEEEeC-CCEEEEEECCCCCEEeE
Confidence 1111 13467788888885 99999999999987653
|
... |
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.00054 Score=80.90 Aligned_cols=230 Identities=13% Similarity=-0.001 Sum_probs=140.5
Q ss_pred EEEEeC-CCCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccc
Q psy9598 523 DIAIDN-RNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISK 601 (1915)
Q Consensus 523 ~Lafsp-dg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~ 601 (1915)
+++|.+ ++.++++....+.|..|+..++.... +.... ..++++... + ..|+.+...+ +.++|+.++.....
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~---~-g~l~v~~~~~-~~~~d~~~g~~~~~ 75 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRP---D-GRLYVADSGG-IAVVDPDTGKVTVL 75 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECT---T-SEEEEEETTC-EEEEETTTTEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEcc---C-CEEEEEEcCc-eEEEecCCCcEEEE
Confidence 578888 77777777788999999998876543 22222 677777731 2 4555555555 45558877643222
Q ss_pred eeccCccccccccCCCCCceEEEEECCCCcEEEEEeCC--------CeEEEEEecCCCCCceeEEeccCCCCeeEEEEcC
Q psy9598 602 TVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGD--------HHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSH 673 (1915)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~D--------g~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fsp 673 (1915)
..... -.......+.+++.++|++.++.... |.|..++.. . .+..+...-...+.|+|+|
T Consensus 76 ~~~~~-------~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~--~---~~~~~~~~~~~pNGi~~s~ 143 (246)
T PF08450_consen 76 ADLPD-------GGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD--G---KVTVVADGLGFPNGIAFSP 143 (246)
T ss_dssp EEEET-------TCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT--S---EEEEEEEEESSEEEEEEET
T ss_pred eeccC-------CCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC--C---eEEEEecCcccccceEECC
Confidence 11100 00123668899999999977776543 445555542 1 1222333345678999999
Q ss_pred CCCEEE-EEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECC
Q psy9598 674 SHLRFV-SGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAF 752 (1915)
Q Consensus 674 dg~~L~-sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~ 752 (1915)
+++.|+ +-+..+.|..|++........... ............-.++++.+|+..++... .+.|.+++..
T Consensus 144 dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~---------~~~~~~~~~g~pDG~~vD~~G~l~va~~~-~~~I~~~~p~ 213 (246)
T PF08450_consen 144 DGKTLYVADSFNGRIWRFDLDADGGELSNRR---------VFIDFPGGPGYPDGLAVDSDGNLWVADWG-GGRIVVFDPD 213 (246)
T ss_dssp TSSEEEEEETTTTEEEEEEEETTTCCEEEEE---------EEEE-SSSSCEEEEEEEBTTS-EEEEEET-TTEEEEEETT
T ss_pred cchheeecccccceeEEEeccccccceeeee---------eEEEcCCCCcCCCcceEcCCCCEEEEEcC-CCEEEEECCC
Confidence 998765 566778888888864332000000 00001111134677999999987766555 8999999987
Q ss_pred CCceEEEeeCCCCCeEEEEEccCCCC-EEEEE
Q psy9598 753 NGDLVQVLKGHTNEVFVLESHPFDSR-VLLSA 783 (1915)
Q Consensus 753 tg~~i~~l~gH~~~V~sl~~sp~dg~-~LaSg 783 (1915)
|+++..+......+++++|...+.. +++|.
T Consensus 214 -G~~~~~i~~p~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 214 -GKLLREIELPVPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp -SCEEEEEE-SSSSEEEEEEESTTSSEEEEEE
T ss_pred -ccEEEEEcCCCCCEEEEEEECCCCCEEEEEe
Confidence 9999888866668999999532444 44443
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG4714|consensus | Back alignment and domain information |
|---|
Probab=98.23 E-value=9.6e-06 Score=89.74 Aligned_cols=169 Identities=12% Similarity=0.113 Sum_probs=109.3
Q ss_pred eeeeEEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCc-EEEEEeCCCCCEEEEEEeCCCCEEEEEeC-----C
Q psy9598 466 LRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGK-LLATLRGCSGEISDIAIDNRNILLAAGTV-----D 539 (1915)
Q Consensus 466 ~~~~~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~-~~~~l~gH~~~I~~Lafspdg~~LaSgs~-----D 539 (1915)
....+.+.-|.++-.|-+.+-.++.+++|..||.+.+++...-. ....+..-...-.+.+....+++|.++.. -
T Consensus 79 i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~ 158 (319)
T KOG4714|consen 79 IDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQ 158 (319)
T ss_pred cCceeeeeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeec
Confidence 33344555676666666667678899999999999999976521 11111111111222333345556655532 1
Q ss_pred CcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCC
Q psy9598 540 KTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNA 619 (1915)
Q Consensus 540 gtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (1915)
+..++|+++....+..-.-....|++++-+|.. .+.+++|+.||.+.+||++..... ...+..|..
T Consensus 159 d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~q---q~~v~cgt~dg~~~l~d~rn~~~p-----------~S~l~ahk~ 224 (319)
T KOG4714|consen 159 DNFYANTLDPIKTLIPSKKALDAVTALCSHPAQ---QHLVCCGTDDGIVGLWDARNVAMP-----------VSLLKAHKA 224 (319)
T ss_pred cceeeecccccccccccccccccchhhhCCccc---ccEEEEecCCCeEEEEEcccccch-----------HHHHHHhhh
Confidence 345566665322221111122348999999854 588999999999999999876321 123346778
Q ss_pred ceEEEEECC-CCcEEEEEeCCCeEEEEEec
Q psy9598 620 HILCSSFSP-GGLFLATGSGDHHVRVYKMD 648 (1915)
Q Consensus 620 ~V~~l~fsp-dg~~Lasgs~Dg~I~IwDl~ 648 (1915)
.|.-+-|+| ++..|++++.||.+..||..
T Consensus 225 ~i~eV~FHpk~p~~Lft~sedGslw~wdas 254 (319)
T KOG4714|consen 225 EIWEVHFHPKNPEHLFTCSEDGSLWHWDAS 254 (319)
T ss_pred hhhheeccCCCchheeEecCCCcEEEEcCC
Confidence 999999999 57789999999999999974
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00042 Score=81.51 Aligned_cols=250 Identities=13% Similarity=0.068 Sum_probs=145.2
Q ss_pred EEEEcC-CCCEEEEEECCC-cEEEEECCCCcEEEEEeCCCCCEE--EEEEeCCCCEEEEEe-----CCCcEEEEECC-CC
Q psy9598 481 CVLFDK-LGEVIVTGADDL-LIKLWRARDGKLLATLRGCSGEIS--DIAIDNRNILLAAGT-----VDKTIRIWNLQ-TL 550 (1915)
Q Consensus 481 ~vafsp-dg~~LaTGs~Dg-~I~IWd~~tg~~~~~l~gH~~~I~--~Lafspdg~~LaSgs-----~DgtIrVWDl~-tg 550 (1915)
.++.+| .+..+|.+-.-| ...+||..++.....+....+.-. .-+||+||++|++.= ..|.|-|||.. +.
T Consensus 9 ~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~ 88 (305)
T PF07433_consen 9 GVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGY 88 (305)
T ss_pred ceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCc
Confidence 677888 556666776665 467899999998877653332221 358999999999863 35899999998 67
Q ss_pred ceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCC
Q psy9598 551 APISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGG 630 (1915)
Q Consensus 551 ~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg 630 (1915)
..+..+..|.-.-..|.+.|+ +..|+++-. | |.- ...++.. ++... .. +.
T Consensus 89 ~ri~E~~s~GIGPHel~l~pD----G~tLvVANG-G-I~T-hpd~GR~--kLNl~-------------------tM--~p 138 (305)
T PF07433_consen 89 RRIGEFPSHGIGPHELLLMPD----GETLVVANG-G-IET-HPDSGRA--KLNLD-------------------TM--QP 138 (305)
T ss_pred EEEeEecCCCcChhhEEEcCC----CCEEEEEcC-C-Ccc-CcccCce--ecChh-------------------hc--CC
Confidence 778888887777778888884 456666532 1 110 0001100 00000 00 01
Q ss_pred cEEEEEeCCCe-EEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCc-------EEEEEccCCceEEeee
Q psy9598 631 LFLATGSGDHH-VRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGT-------ALIWYYKCSQWRFIRL 702 (1915)
Q Consensus 631 ~~Lasgs~Dg~-I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~-------I~IWDl~~~~~~~~~~ 702 (1915)
++.+.-..+|. +--|.+.. .-|...|..|++..+|..++.+-..|- |-+|+. +....
T Consensus 139 sL~~ld~~sG~ll~q~~Lp~----------~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~--- 203 (305)
T PF07433_consen 139 SLVYLDARSGALLEQVELPP----------DLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--GGALR--- 203 (305)
T ss_pred ceEEEecCCCceeeeeecCc----------cccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC--CCcce---
Confidence 12222122332 23333310 124556667777777654444332221 112211 11000
Q ss_pred cccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEE
Q psy9598 703 DMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLS 782 (1915)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaS 782 (1915)
...............|-+|+++.++.++++++-..+.+.+||..++.++....-.. +..|+..+ ++ +++|
T Consensus 204 ------~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~D--~cGva~~~-~~-f~~s 273 (305)
T PF07433_consen 204 ------LLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLPD--ACGVAPTD-DG-FLVS 273 (305)
T ss_pred ------eccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccCc--eeeeeecC-Cc-eEEe
Confidence 00000111234567899999999999998888878999999999999988765443 56676665 44 6665
Q ss_pred Eec
Q psy9598 783 AGH 785 (1915)
Q Consensus 783 gs~ 785 (1915)
.|.
T Consensus 274 sG~ 276 (305)
T PF07433_consen 274 SGQ 276 (305)
T ss_pred CCC
Confidence 554
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.00093 Score=86.92 Aligned_cols=287 Identities=13% Similarity=0.067 Sum_probs=161.5
Q ss_pred CCEEEEEECCCcEEEEECCCCcEEEEEeCCCC------CEE--EEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecC
Q psy9598 488 GEVIVTGADDLLIKLWRARDGKLLATLRGCSG------EIS--DIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGH 559 (1915)
Q Consensus 488 g~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~------~I~--~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h 559 (1915)
+..|+.++.++.|...|..+|+.+..+..... .+. .+++. ++..++.++.++.|..+|..+|+.+..+...
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~ 139 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNN 139 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence 55677788899999999999998887754322 111 11111 2257778888999999999999998877543
Q ss_pred CCC--eEEEEeccCccCCCcEEEEEe---------CCCeEEEEecccCccccceeccCccccccccC--------CCCCc
Q psy9598 560 QGI--ITGVNFCPLEVNGFNYLASTS---------TDGCIGFWKYKLDIDISKTVFHEPVMFNERIR--------PGNAH 620 (1915)
Q Consensus 560 ~~~--V~sl~fsp~~~~d~~~L~sgs---------~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~--------~~~~~ 620 (1915)
... -..+.-+|.- ....++.++ .+|.|..+|..+++.+.......+........ .....
T Consensus 140 ~~~~~~~~i~ssP~v--~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 217 (488)
T cd00216 140 DQVPPGYTMTGAPTI--VKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGT 217 (488)
T ss_pred CCcCcceEecCCCEE--ECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCC
Confidence 221 0112222321 114455554 36889999999998766655431111000000 00011
Q ss_pred e-EEEEECCCCcEEEEEeCCC------------------eEEEEEecCCCCCceeEEec--cCCC----CeeEEEEc---
Q psy9598 621 I-LCSSFSPGGLFLATGSGDH------------------HVRVYKMDGVDSPLGILEVE--EHSD----KVDSIQWS--- 672 (1915)
Q Consensus 621 V-~~l~fspdg~~Lasgs~Dg------------------~I~IwDl~~~~~~~~i~~l~--~h~~----~V~sl~fs--- 672 (1915)
+ ...++.+.+..+++++.++ .|.-+|+.+. ...-... .|.. ......+.
T Consensus 218 vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG---~~~W~~~~~~~~~~~~~~~s~p~~~~~~ 294 (488)
T cd00216 218 SWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTG---KVKWFYQTTPHDLWDYDGPNQPSLADIK 294 (488)
T ss_pred ccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCC---CEEEEeeCCCCCCcccccCCCCeEEecc
Confidence 1 1345555566788887665 5777776332 2222221 1211 00000111
Q ss_pred -CCCC---EEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEE---------
Q psy9598 673 -HSHL---RFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITA--------- 739 (1915)
Q Consensus 673 -pdg~---~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~--------- 739 (1915)
-+|. .+++++.+|.+...|..+++.+...... ...++.++ ..++++
T Consensus 295 ~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~-------------------~~~~~~~~--~~vyv~~~~~~~~~~ 353 (488)
T cd00216 295 PKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV-------------------EQPMAYDP--GLVYLGAFHIPLGLP 353 (488)
T ss_pred ccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee-------------------ccccccCC--ceEEEccccccccCc
Confidence 2333 5788889999999999999855432110 00011111 111111
Q ss_pred --------EecCCeEEEEECCCCceEEEeeCCC--------CCe--EEEEEccCCCCEEEEEecCceEEEEECCCCcccc
Q psy9598 740 --------INFNFQIKIWDAFNGDLVQVLKGHT--------NEV--FVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRG 801 (1915)
Q Consensus 740 --------s~~Dg~I~vwD~~tg~~i~~l~gH~--------~~V--~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~ 801 (1915)
...+|.|...|+.+|+.+-...... .+. ..+.. .+.+|++++.||.|+.+|..+|+.
T Consensus 354 ~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~---~g~~v~~g~~dG~l~ald~~tG~~-- 428 (488)
T cd00216 354 PQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT---AGNLVFAGAADGYFRAFDATTGKE-- 428 (488)
T ss_pred ccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe---cCCeEEEECCCCeEEEEECCCCce--
Confidence 1125778888888888777665321 111 11222 457888899999999999999998
Q ss_pred ceeee
Q psy9598 802 YKWFH 806 (1915)
Q Consensus 802 ~~~~~ 806 (1915)
+-.+.
T Consensus 429 lW~~~ 433 (488)
T cd00216 429 LWKFR 433 (488)
T ss_pred eeEEE
Confidence 55443
|
The alignment model contains an 8-bladed beta-propeller. |
| >KOG2114|consensus | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.00016 Score=91.99 Aligned_cols=196 Identities=13% Similarity=0.200 Sum_probs=133.6
Q ss_pred cEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCC-EEEEEEeCCCCEEEEEeCCC-----cEEEEECCCC-
Q psy9598 478 AVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGE-ISDIAIDNRNILLAAGTVDK-----TIRIWNLQTL- 550 (1915)
Q Consensus 478 ~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~-I~~Lafspdg~~LaSgs~Dg-----tIrVWDl~tg- 550 (1915)
.|+| |++.+..+|.|+.+|.|.+.+- ..+.++.+..+... |..|....+..+|++.+.|+ .|+||++...
T Consensus 27 ~isc--~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~ 103 (933)
T KOG2114|consen 27 AISC--CSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVD 103 (933)
T ss_pred ceeE--EcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccC
Confidence 5555 5677899999999999988883 45666788888777 56665555557888887765 4999999632
Q ss_pred -----ceE--EEeec-----CCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecc--cCccccceeccCccccccccCC
Q psy9598 551 -----API--SVLVG-----HQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYK--LDIDISKTVFHEPVMFNERIRP 616 (1915)
Q Consensus 551 -----~~~--~~l~~-----h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~--~~~~~~~~~~~~~~~~~~~~~~ 616 (1915)
.++ +.+.+ ...++.+++.+.+ -..+|+|-.+|.|..+.-+ ..... .......
T Consensus 104 ~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~----l~~Iv~Gf~nG~V~~~~GDi~RDrgs----------r~~~~~~ 169 (933)
T KOG2114|consen 104 KNNSPQCLYEHRIFTIKNPTNPSPASSLAVSED----LKTIVCGFTNGLVICYKGDILRDRGS----------RQDYSHR 169 (933)
T ss_pred CCCCcceeeeeeeeccCCCCCCCcceEEEEEcc----ccEEEEEecCcEEEEEcCcchhcccc----------ceeeecc
Confidence 233 12222 2456888888874 4899999999999888422 11111 1112234
Q ss_pred CCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEcc
Q psy9598 617 GNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYK 693 (1915)
Q Consensus 617 ~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~ 693 (1915)
+..+|+.+++..++..++....-..|.+|.+.+.. .....+..|...+.|.+|++....|++|+. ..+.+|+..
T Consensus 170 ~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~--p~~~~ld~~G~~lnCss~~~~t~qfIca~~-e~l~fY~sd 243 (933)
T KOG2114|consen 170 GKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRT--PSLKVLDNNGISLNCSSFSDGTYQFICAGS-EFLYFYDSD 243 (933)
T ss_pred CCCCceeeEEecCCceeEEEEecceeEEEEecCCC--cceeeeccCCccceeeecCCCCccEEEecC-ceEEEEcCC
Confidence 56899999999998873333344579999996332 334457788889999999877665666654 457777654
|
|
| >KOG4649|consensus | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.0029 Score=70.62 Aligned_cols=109 Identities=15% Similarity=0.013 Sum_probs=77.6
Q ss_pred CCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEE-
Q psy9598 488 GEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGV- 566 (1915)
Q Consensus 488 g~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl- 566 (1915)
..+++.||..+.+.--|..+|.++..-. -...|-+-+.- -|.+++.|+..|.+.+.++.+|.....+..-. .|.+-
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~-~vk~~a 99 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILE-TVKVRA 99 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehh-hhccce
Confidence 5688889999999999999998876432 12233332222 46689999999999999999998777665322 22221
Q ss_pred EeccCccCCCcEEEEEeCCCeEEEEecccCcccccee
Q psy9598 567 NFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTV 603 (1915)
Q Consensus 567 ~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~ 603 (1915)
...+ ++.++..|+.|++....|..+..++.+..
T Consensus 100 ~~d~----~~glIycgshd~~~yalD~~~~~cVyksk 132 (354)
T KOG4649|consen 100 QCDF----DGGLIYCGSHDGNFYALDPKTYGCVYKSK 132 (354)
T ss_pred EEcC----CCceEEEecCCCcEEEecccccceEEecc
Confidence 1222 45899999999999999998887665543
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.00042 Score=87.89 Aligned_cols=191 Identities=13% Similarity=0.039 Sum_probs=116.3
Q ss_pred cEEEEEEcCCCCE-EEEEECC---CcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEE-eC--CCcEEEEECCCC
Q psy9598 478 AVFCVLFDKLGEV-IVTGADD---LLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAG-TV--DKTIRIWNLQTL 550 (1915)
Q Consensus 478 ~V~~vafspdg~~-LaTGs~D---g~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSg-s~--DgtIrVWDl~tg 550 (1915)
.+..-.|+|||+. ++..+.. ..|.++|+.+|+...... ..+.+.+..|+|||+.|+.. +. +..|.++|+.++
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g 267 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK 267 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 7888999999985 6644433 469999998887655433 45566778899999876644 33 356888898877
Q ss_pred ceEEEeecCCCCeEEEEeccCccCCCcEEEEEe-CCC--eEEEEecccCccccceeccCccccccccCCCCCceEEEEEC
Q psy9598 551 APISVLVGHQGIITGVNFCPLEVNGFNYLASTS-TDG--CIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFS 627 (1915)
Q Consensus 551 ~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs-~Dg--tI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs 627 (1915)
... .+..+.+......|+|++ +.|+..+ ..| .|.++|+.++... .+.+. + .. ...|+
T Consensus 268 ~~~-~LT~~~~~d~~p~~SPDG----~~I~F~Sdr~g~~~Iy~~dl~~g~~~-rlt~~-----------g-~~--~~~~S 327 (419)
T PRK04043 268 TLT-QITNYPGIDVNGNFVEDD----KRIVFVSDRLGYPNIFMKKLNSGSVE-QVVFH-----------G-KN--NSSVS 327 (419)
T ss_pred cEE-EcccCCCccCccEECCCC----CEEEEEECCCCCceEEEEECCCCCeE-eCccC-----------C-Cc--CceEC
Confidence 643 444444434466899943 5555554 344 4666677655321 11110 1 11 24899
Q ss_pred CCCcEEEEEeCC---------CeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCC-Cc--EEEEEccC
Q psy9598 628 PGGLFLATGSGD---------HHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRD-GT--ALIWYYKC 694 (1915)
Q Consensus 628 pdg~~Lasgs~D---------g~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~D-G~--I~IWDl~~ 694 (1915)
|+|+.|+..+.. ..|.+.|+.+.. ...+... .......|+|+|..|+..+.. |. +.+.++..
T Consensus 328 PDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~----~~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 328 TYKNYIVYSSRETNNEFGKNTFNLYLISTNSDY----IRRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred CCCCEEEEEEcCCCcccCCCCcEEEEEECCCCC----eEECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence 999988876653 257777774332 1222222 223357899999977665543 33 44444443
|
|
| >KOG2114|consensus | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.00018 Score=91.59 Aligned_cols=221 Identities=12% Similarity=0.074 Sum_probs=138.2
Q ss_pred EEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCCCC-eEEEEeccCccCCCcEEEEEeCCC-----eEEEEecccCcc
Q psy9598 525 AIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGI-ITGVNFCPLEVNGFNYLASTSTDG-----CIGFWKYKLDID 598 (1915)
Q Consensus 525 afspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~-V~sl~fsp~~~~d~~~L~sgs~Dg-----tI~iWDl~~~~~ 598 (1915)
+|++.+..+|.|+.+|.|.+.+- +.+.+..++.+... |..+-... +..+|++.+.|+ .|+||++..-..
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~----~~~~L~sv~Ed~~~np~llkiw~lek~~~ 104 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILN----KQNFLFSVGEDEQGNPVLLKIWDLEKVDK 104 (933)
T ss_pred EEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhccc----CceEEEEEeecCCCCceEEEEecccccCC
Confidence 45788889999999998777663 23444677777666 44443332 336888877665 589999875421
Q ss_pred ccc-eeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecC-CCCCceeEEeccCCCCeeEEEEcCCCC
Q psy9598 599 ISK-TVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDG-VDSPLGILEVEEHSDKVDSIQWSHSHL 676 (1915)
Q Consensus 599 ~~~-~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~-~~~~~~i~~l~~h~~~V~sl~fspdg~ 676 (1915)
-.. ........+.........++.+++++.+-..+|+|-.+|.|..+.-+- ...............+|+++++..++.
T Consensus 105 n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~ 184 (933)
T KOG2114|consen 105 NNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGK 184 (933)
T ss_pred CCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCc
Confidence 110 000000011111222456788999999999999999999999985421 112223333444567999999998888
Q ss_pred EEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCce
Q psy9598 677 RFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDL 756 (1915)
Q Consensus 677 ~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~ 756 (1915)
.++-...-..|.+|.+.... +.......++..+.|.++++....+++++ +..|.+|+.....+
T Consensus 185 s~lFv~Tt~~V~~y~l~gr~---------------p~~~~ld~~G~~lnCss~~~~t~qfIca~--~e~l~fY~sd~~~~ 247 (933)
T KOG2114|consen 185 SVLFVATTEQVMLYSLSGRT---------------PSLKVLDNNGISLNCSSFSDGTYQFICAG--SEFLYFYDSDGRGP 247 (933)
T ss_pred eeEEEEecceeEEEEecCCC---------------cceeeeccCCccceeeecCCCCccEEEec--CceEEEEcCCCcce
Confidence 63333344578888776322 11122345777888989887666466655 46799999876555
Q ss_pred EEEee-CCCCCe
Q psy9598 757 VQVLK-GHTNEV 767 (1915)
Q Consensus 757 i~~l~-gH~~~V 767 (1915)
...+. ||....
T Consensus 248 cfaf~~g~kk~~ 259 (933)
T KOG2114|consen 248 CFAFEVGEKKEM 259 (933)
T ss_pred eeeecCCCeEEE
Confidence 55555 555433
|
|
| >KOG1275|consensus | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.8e-05 Score=100.45 Aligned_cols=169 Identities=20% Similarity=0.194 Sum_probs=124.2
Q ss_pred CCceeeeEEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeC----
Q psy9598 463 YSNLRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTV---- 538 (1915)
Q Consensus 463 ~~~~~~~~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~---- 538 (1915)
..+.+..+...--.+.|+-+. .+++++++|...|+|.+-|..+.+.++++..|++.|.++.. .|++|+++|.
T Consensus 164 l~~~~e~r~~~v~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv--~GNlLitCG~S~R~ 239 (1118)
T KOG1275|consen 164 LNTEKETRTTNVSASGVTIMR--YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV--QGNLLITCGYSMRR 239 (1118)
T ss_pred cccceeeeeeeccCCceEEEE--ecCcEEEeecccceEEeecCCcCceeeeeeccccceeeeec--cCCeEEEeeccccc
Confidence 334444444333333454444 45899999999999999999999999999999999977654 5778998874
Q ss_pred -----CCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccc
Q psy9598 539 -----DKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNER 613 (1915)
Q Consensus 539 -----DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~ 613 (1915)
|.-|+|||++..+.+.-+.-+.++ .-+.|+|.- ...+++++..|...+-|..+-.. |......
T Consensus 240 ~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl---~t~~~V~S~sGq~q~vd~~~lsN--------P~~~~~~ 307 (1118)
T KOG1275|consen 240 YNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSL---TTRLAVTSQSGQFQFVDTATLSN--------PPAGVKM 307 (1118)
T ss_pred ccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccc---cceEEEEecccceeeccccccCC--------CccceeE
Confidence 567899999987777666655555 567888864 37889999999999988433211 1111111
Q ss_pred cCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEe
Q psy9598 614 IRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKM 647 (1915)
Q Consensus 614 ~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl 647 (1915)
..+....+..++++++|..++.|..+|.|.+|.-
T Consensus 308 v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 308 VNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred EccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 2233456899999999999999999999999973
|
|
| >KOG2066|consensus | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00013 Score=92.37 Aligned_cols=147 Identities=14% Similarity=0.134 Sum_probs=106.2
Q ss_pred cCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCC-----CCEEEEEeCCCcEEEEECCC--CceEEEee
Q psy9598 485 DKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNR-----NILLAAGTVDKTIRIWNLQT--LAPISVLV 557 (1915)
Q Consensus 485 spdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspd-----g~~LaSgs~DgtIrVWDl~t--g~~~~~l~ 557 (1915)
+-.|.+++|||.||+|.|..+.+.+...++. ...+|.+|+++|+ .+.+++||.-| +.++.-.= ..-...+.
T Consensus 80 ~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~ 157 (846)
T KOG2066|consen 80 ILEGEYVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLS 157 (846)
T ss_pred ccCCceEEEecCCCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeee
Confidence 4569999999999999999999998888776 3468999999997 56899999888 66664321 11112455
Q ss_pred cCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEe
Q psy9598 558 GHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGS 637 (1915)
Q Consensus 558 ~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs 637 (1915)
...|+|.+|.|.- ++++-++.+| |+|||+.++..+..+........... ....+.|.+.. .|+.|-
T Consensus 158 ~~eG~I~~i~W~g------~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~------fpphl~W~~~~-~LVIGW 223 (846)
T KOG2066|consen 158 EGEGPIHSIKWRG------NLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPEL------FPPHLHWQDED-RLVIGW 223 (846)
T ss_pred cCccceEEEEecC------cEEEEecCCC-cEEEeccccceeeccCCCCCCCCccc------CCCceEecCCC-eEEEec
Confidence 6678999999974 7888888888 89999998876655554432222222 23347777765 455554
Q ss_pred CCCeEEEEEec
Q psy9598 638 GDHHVRVYKMD 648 (1915)
Q Consensus 638 ~Dg~I~IwDl~ 648 (1915)
. .+|+|..+.
T Consensus 224 ~-d~v~i~~I~ 233 (846)
T KOG2066|consen 224 G-DSVKICSIK 233 (846)
T ss_pred C-CeEEEEEEe
Confidence 4 478888885
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00065 Score=79.55 Aligned_cols=228 Identities=13% Similarity=0.039 Sum_probs=132.3
Q ss_pred CCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCC
Q psy9598 539 DKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGN 618 (1915)
Q Consensus 539 DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~ 618 (1915)
+|+|..||..+|+.+....--. .+......+.. ++..+++++.++.|..||..++..+....+..+...
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~-~~~~~~~~~~~--~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~-------- 70 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGP-GIGGPVATAVP--DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISG-------- 70 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSS-SCSSEEETEEE--ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGS--------
T ss_pred CCEEEEEECCCCCEEEEEECCC-CCCCccceEEE--eCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccc--------
Confidence 6899999999999988875311 12111211110 236788889999999999999987666655322111
Q ss_pred CceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEe-ccCC---CCeeEEEEcCCCCEEEEEeCCCcEEEEEccC
Q psy9598 619 AHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEV-EEHS---DKVDSIQWSHSHLRFVSGSRDGTALIWYYKC 694 (1915)
Q Consensus 619 ~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l-~~h~---~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~ 694 (1915)
. . ...+..+++++.++.|..+|..+ ...+... .... .....+.....+..++++..+|.|..+|+.+
T Consensus 71 -~---~--~~~~~~v~v~~~~~~l~~~d~~t---G~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t 141 (238)
T PF13360_consen 71 -A---P--VVDGGRVYVGTSDGSLYALDAKT---GKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKT 141 (238)
T ss_dssp -G---E--EEETTEEEEEETTSEEEEEETTT---SCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTT
T ss_pred -e---e--eecccccccccceeeeEecccCC---cceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCC
Confidence 0 1 12344566666788888888633 2333331 1110 1112222333377899999999999999999
Q ss_pred CceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCe-EEEEECCCCceEEEeeCCCCCeEEEEEc
Q psy9598 695 SQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQ-IKIWDAFNGDLVQVLKGHTNEVFVLESH 773 (1915)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~-I~vwD~~tg~~i~~l~gH~~~V~sl~~s 773 (1915)
++.+..... .. .... . .......+..-.+..++ .++++.. ++. +.+ |+.+++.+.... ...+..+ ..
T Consensus 142 G~~~w~~~~-~~-~~~~---~-~~~~~~~~~~~~~~~~~-~v~~~~~-~g~~~~~-d~~tg~~~w~~~--~~~~~~~-~~ 209 (238)
T PF13360_consen 142 GKLLWKYPV-GE-PRGS---S-PISSFSDINGSPVISDG-RVYVSSG-DGRVVAV-DLATGEKLWSKP--ISGIYSL-PS 209 (238)
T ss_dssp TEEEEEEES-ST-T-SS------EEEETTEEEEEECCTT-EEEEECC-TSSEEEE-ETTTTEEEEEEC--SS-ECEC-EE
T ss_pred CcEEEEeec-CC-CCCC---c-ceeeecccccceEEECC-EEEEEcC-CCeEEEE-ECCCCCEEEEec--CCCccCC-ce
Confidence 986543321 10 0000 0 00011122233333345 6666666 675 555 999999765333 2223332 23
Q ss_pred cCCCCEEEEEecCceEEEEECCCCcc
Q psy9598 774 PFDSRVLLSAGHDGLIIIWDILSSKQ 799 (1915)
Q Consensus 774 p~dg~~LaSgs~DG~I~IWdl~s~~~ 799 (1915)
. .+..|+.++.+|.|.+||+.+++.
T Consensus 210 ~-~~~~l~~~~~~~~l~~~d~~tG~~ 234 (238)
T PF13360_consen 210 V-DGGTLYVTSSDGRLYALDLKTGKV 234 (238)
T ss_dssp C-CCTEEEEEETTTEEEEEETTTTEE
T ss_pred e-eCCEEEEEeCCCEEEEEECCCCCE
Confidence 3 567777777999999999999876
|
... |
| >KOG1920|consensus | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.0029 Score=83.87 Aligned_cols=252 Identities=17% Similarity=0.204 Sum_probs=149.8
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEec----
Q psy9598 518 SGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKY---- 593 (1915)
Q Consensus 518 ~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl---- 593 (1915)
.+.|.++.|..++.-|+.+...|.|.+-|..+.... ....-.+.|.+++|+|+. .+++..+..++|.+-..
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aaswS~De----e~l~liT~~~tll~mT~~f~~ 142 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELE-IVGNVDNGISAASWSPDE----ELLALITGRQTLLFMTKDFEP 142 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEccccccee-eeeeccCceEEEeecCCC----cEEEEEeCCcEEEEEeccccc
Confidence 368999999999999999999999999988775432 222245689999999954 88888888888876433
Q ss_pred ccCccc----------cceecc-Cccccc--------------cccCC---CCCceEEEEECCCCcEEEEE-----eCCC
Q psy9598 594 KLDIDI----------SKTVFH-EPVMFN--------------ERIRP---GNAHILCSSFSPGGLFLATG-----SGDH 640 (1915)
Q Consensus 594 ~~~~~~----------~~~~~~-~~~~~~--------------~~~~~---~~~~V~~l~fspdg~~Lasg-----s~Dg 640 (1915)
-..+.+ ...... ....+. ....+ ....=++++|--||.++|+. ....
T Consensus 143 i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~R 222 (1265)
T KOG1920|consen 143 IAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTR 222 (1265)
T ss_pred hhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCce
Confidence 111111 000000 000000 00000 11223458999999998883 3337
Q ss_pred eEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEe---CCCcEEEEEccCCceEEeeecccccCCCCcccccc
Q psy9598 641 HVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGS---RDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDE 717 (1915)
Q Consensus 641 ~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs---~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~ 717 (1915)
.|+|||-.+. .-..-....+.-.+++|-|.|..+++-. .|+.|.+|.-+.-. ........
T Consensus 223 kirV~drEg~----Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~-------------hg~f~l~~ 285 (1265)
T KOG1920|consen 223 KIRVYDREGA----LNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLR-------------HGEFVLPF 285 (1265)
T ss_pred eEEEecccch----hhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCcc-------------ccccccCC
Confidence 9999997411 1111122233456889999999888753 55678887543221 00011111
Q ss_pred ccccccEEEEEECCCCCEEEE---EEecCCeEEEEECCCCce--EEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEE
Q psy9598 718 TNKKIKVTMVAWDASDRWVIT---AINFNFQIKIWDAFNGDL--VQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIW 792 (1915)
Q Consensus 718 ~~~~~~V~~va~spdg~~L~t---~s~~Dg~I~vwD~~tg~~--i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IW 792 (1915)
......|..++|+.++..|++ ... ...|++|-+.+... -+.+....... +.|+|.....|..-..+|.+.++
T Consensus 286 p~de~~ve~L~Wns~sdiLAv~~~~~e-~~~v~lwt~~NyhWYLKq~l~~~~~~~--~~W~p~~~~~L~v~~~sG~~~v~ 362 (1265)
T KOG1920|consen 286 PLDEKEVEELAWNSNSDILAVVTSNLE-NSLVQLWTTGNYHWYLKQELQFSQKAL--LMWDPVTEKTLHVLRESGQRLVR 362 (1265)
T ss_pred cccccchheeeecCCCCceeeeecccc-cceEEEEEecCeEEEEEEEEecccccc--ccccCCCceeEEEEecCCcEEEE
Confidence 122334889999999999887 333 44599999876532 23333332222 77888555555555466666665
Q ss_pred EC
Q psy9598 793 DI 794 (1915)
Q Consensus 793 dl 794 (1915)
++
T Consensus 363 ~~ 364 (1265)
T KOG1920|consen 363 DF 364 (1265)
T ss_pred EE
Confidence 54
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.07 E-value=1.1e-05 Score=65.64 Aligned_cols=38 Identities=21% Similarity=0.423 Sum_probs=35.9
Q ss_pred eeeEEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEE
Q psy9598 467 RQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWR 504 (1915)
Q Consensus 467 ~~~~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd 504 (1915)
++++++.+|.+.|++|+|+|++.+|+||+.|+.|+|||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 45678999999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.06 E-value=1e-05 Score=65.77 Aligned_cols=39 Identities=44% Similarity=0.723 Sum_probs=37.2
Q ss_pred CcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEE
Q psy9598 508 GKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWN 546 (1915)
Q Consensus 508 g~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWD 546 (1915)
|+++.++.+|.+.|++|+|+|++.+|++|+.|++|+|||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467899999999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG1645|consensus | Back alignment and domain information |
|---|
Probab=98.06 E-value=7.9e-05 Score=87.34 Aligned_cols=263 Identities=15% Similarity=0.083 Sum_probs=150.7
Q ss_pred EEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCce
Q psy9598 542 IRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHI 621 (1915)
Q Consensus 542 IrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V 621 (1915)
|++.+..+.+....+.+|...|.+++|+|.. ..+|..++.+..|+|.|+.+...+...... ..+
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~---~GLl~~asl~nkiki~dlet~~~vssy~a~-------------~~~ 238 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFN---EGLLGLASLGNKIKIMDLETSCVVSSYIAY-------------NQI 238 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccc---cceeeeeccCceEEEEecccceeeeheecc-------------CCc
Confidence 6777766666677788899999999999964 358999999999999999988665554443 678
Q ss_pred EEEEECCCC-cEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEc------CCCCEEEEEeCCCcEEEEEccC
Q psy9598 622 LCSSFSPGG-LFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWS------HSHLRFVSGSRDGTALIWYYKC 694 (1915)
Q Consensus 622 ~~l~fspdg-~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fs------pdg~~L~sgs~DG~I~IWDl~~ 694 (1915)
++++|.-+. .+|.+|..+|.|.|||++....+.....-.-...+|..|+.- +.|.+|+..+.+ +..|.+..
T Consensus 239 wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~ 316 (463)
T KOG1645|consen 239 WSCCWDLDERHVIYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVF 316 (463)
T ss_pred eeeeeccCCcceeEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhc
Confidence 999998865 578888899999999997655443332222233455554432 234444444433 34565432
Q ss_pred CceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCC-------eEEEEECCCCceEEEee-CCCC-
Q psy9598 695 SQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNF-------QIKIWDAFNGDLVQVLK-GHTN- 765 (1915)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg-------~I~vwD~~tg~~i~~l~-gH~~- 765 (1915)
.. .+. .........+.+.++...+..+.++++...+- .+---|..+|..+..-+ +|.+
T Consensus 317 s~---------~~~----p~vlele~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs 383 (463)
T KOG1645|consen 317 SA---------ECL----PCVLELEPPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGS 383 (463)
T ss_pred cc---------cCC----CcccccCCCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCC
Confidence 21 000 11112223344555555555455554433111 00011222333333221 2211
Q ss_pred Ce-----EEEEEccCCCCEEE-EEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcC-CCC-EEEEEeCCCe
Q psy9598 766 EV-----FVLESHPFDSRVLL-SAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSP-DGT-TCALTDSYGH 837 (1915)
Q Consensus 766 ~V-----~sl~~sp~dg~~La-Sgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSp-dg~-~Lasg~~dG~ 837 (1915)
.- +...+.+.+.++|+ +|+....+.+||..+... +..+. -..+|.+++... +|. +|++-+ |..
T Consensus 384 ~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~ev--vQ~l~------~~epv~Dicp~~~n~~syLa~LT-d~~ 454 (463)
T KOG1645|consen 384 KQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSFEV--VQTLA------LSEPVLDICPNDTNGSSYLALLT-DDR 454 (463)
T ss_pred cccccccccceeccccccEEEEecCCcceeEEeccchhhe--eeecc------cCcceeecceeecCCcchhhhee-cce
Confidence 00 01112222445444 455667899999999887 66654 236777776543 444 454444 457
Q ss_pred EEEEeCC
Q psy9598 838 LLVYGLG 844 (1915)
Q Consensus 838 I~Iwdl~ 844 (1915)
++||...
T Consensus 455 v~Iyk~e 461 (463)
T KOG1645|consen 455 VHIYKNE 461 (463)
T ss_pred EEEEecC
Confidence 8887654
|
|
| >KOG3617|consensus | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00014 Score=91.20 Aligned_cols=322 Identities=11% Similarity=0.111 Sum_probs=174.6
Q ss_pred EEEEEcCCCCEEEEEEC----CCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEE
Q psy9598 480 FCVLFDKLGEVIVTGAD----DLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISV 555 (1915)
Q Consensus 480 ~~vafspdg~~LaTGs~----Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~ 555 (1915)
+-+.|+|...++|+++- .|.|.||- .+|++..... ..-.+++|+|+|..-.|++|-.-|.+.||...+.+.-..
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv 96 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTV 96 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCCceeeee
Confidence 34568888888887764 57888886 5666443221 112256799999999999999999999999988776666
Q ss_pred eecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCc----
Q psy9598 556 LVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGL---- 631 (1915)
Q Consensus 556 l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~---- 631 (1915)
...|..+|..+.|+++ |..|+++..-|.|.+|.+.....+.....- ...+. ..-...|..+++++.
T Consensus 97 ~~th~a~i~~l~wS~~----G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~-----~hel~-~~ltl~cfRL~~~~Ee~~~ 166 (1416)
T KOG3617|consen 97 VETHPAPIQGLDWSHD----GTVLMTLDNPGSVHLWRYDVIGEIQTSNIM-----QHELN-DQLTLWCFRLSYDREEKFK 166 (1416)
T ss_pred ccCCCCCceeEEecCC----CCeEEEcCCCceeEEEEeeeccccccchhh-----hhHhh-ceeeEEEEecCCChHHhhh
Confidence 7789999999999994 599999999999999987643222221111 01111 112345666677642
Q ss_pred --EEEEEeCCCeEE-EEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccC
Q psy9598 632 --FLATGSGDHHVR-VYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCL 708 (1915)
Q Consensus 632 --~Lasgs~Dg~I~-IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~ 708 (1915)
..++.+.+..+- .++........ -..| .-.|+|..|+.++.+|+|+..|-...+......+..
T Consensus 167 laKaaVtgDe~alD~~fnwk~~~a~r----s~~k-------sgv~~g~~F~~~~~~GtVyyvdq~g~~~~V~k~dS~--- 232 (1416)
T KOG3617|consen 167 LAKAAVTGDESALDEPFNWKESLAER----SDEK-------SGVPKGTEFLFAGKSGTVYYVDQNGRQRTVHKLDSE--- 232 (1416)
T ss_pred hhhhhccCchhhhcccccCccchhhc----cccc-------cCCCCCcEEEEEcCCceEEEEcCCCcEEEEEEccch---
Confidence 123333333322 33331000000 0011 124688889999999998877644332211111110
Q ss_pred CCCccccccccccccEEEEEECCCCCEEEE------------------EEecCCeEEEEECCCCceEEE--ee-CCCCCe
Q psy9598 709 PHTKETSDETNKKIKVTMVAWDASDRWVIT------------------AINFNFQIKIWDAFNGDLVQV--LK-GHTNEV 767 (1915)
Q Consensus 709 ~~~~~~~~~~~~~~~V~~va~spdg~~L~t------------------~s~~Dg~I~vwD~~tg~~i~~--l~-gH~~~V 767 (1915)
......+....|.++.-.-...+++. |+. .|.|-+-.. +|-+... +. .....+
T Consensus 233 ----vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~Ggr-qGgiA~sEs-sGvLr~~eKyg~e~ge~~ 306 (1416)
T KOG3617|consen 233 ----VQMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGR-QGGIACSES-SGVLRKSEKYGLELGEGI 306 (1416)
T ss_pred ----HHHHHhcccceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCc-cCccccccc-cccccCCcchhhhcCCce
Confidence 00000111111222111111111110 000 111111100 0100000 00 123468
Q ss_pred EEEEEccCCCCEEEEEecCceEEEEECCCCccc---cceeeeeeecCCCCcceEEEEEcCCCCEEEEEeC
Q psy9598 768 FVLESHPFDSRVLLSAGHDGLIIIWDILSSKQR---GYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDS 834 (1915)
Q Consensus 768 ~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~---~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~ 834 (1915)
+|++++. .+..|+.|...|.|.+|--...... +...+...-.....+.|..+.|.|--..+|+-+.
T Consensus 307 ~c~cY~~-~~~~l~agt~~gnv~~w~~v~~~f~g~p~~d~w~l~~~~e~~g~I~~i~Wg~~k~~~avn~~ 375 (1416)
T KOG3617|consen 307 LCMCYGE-KEIRLWAGTKEGNVTIWLDVNKGFQGDPTIDVWTLNGKRESLGKISLIRWGPIKSTAAVNTE 375 (1416)
T ss_pred EEEEEec-cceEEEecccCCcEEEeeecCccccCCCCcceEEecCchhhccceEEEEeccccchhhhhhh
Confidence 9999998 7788999999999999954332111 1112221112233478999999996665555444
|
|
| >KOG2695|consensus | Back alignment and domain information |
|---|
Probab=98.05 E-value=6.8e-06 Score=94.04 Aligned_cols=128 Identities=16% Similarity=0.164 Sum_probs=103.0
Q ss_pred CCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCC-----cEEEEEeCCCCCEEEEEEeC-CCCEEEEEeCCCcEEEEECC
Q psy9598 475 HLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDG-----KLLATLRGCSGEISDIAIDN-RNILLAAGTVDKTIRIWNLQ 548 (1915)
Q Consensus 475 H~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg-----~~~~~l~gH~~~I~~Lafsp-dg~~LaSgs~DgtIrVWDl~ 548 (1915)
-.+.|.++.|.-.+.+|+.|+..|.|.+.|+..+ .+.+.|. |.+.|+||..-. ++++|++.+.+|+|.+||++
T Consensus 251 sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R 329 (425)
T KOG2695|consen 251 SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLR 329 (425)
T ss_pred cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchhhhhhhccccceEeeccCcCceeEeeeh
Confidence 4577889999988999999999999999999865 3455554 899999998776 78899999999999999998
Q ss_pred CCce---EEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceecc
Q psy9598 549 TLAP---ISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFH 605 (1915)
Q Consensus 549 tg~~---~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~ 605 (1915)
--++ +..+.||...-.-+-++-.. ....++++++|...+||.++.+..+.+..+.
T Consensus 330 ~~K~~~~V~qYeGHvN~~a~l~~~v~~--eeg~I~s~GdDcytRiWsl~~ghLl~tipf~ 387 (425)
T KOG2695|consen 330 ATKCKKSVMQYEGHVNLSAYLPAHVKE--EEGSIFSVGDDCYTRIWSLDSGHLLCTIPFP 387 (425)
T ss_pred hhhcccceeeeeccccccccccccccc--ccceEEEccCeeEEEEEecccCceeeccCCC
Confidence 7666 88888887654444443322 4468888999999999999999776666554
|
|
| >KOG2695|consensus | Back alignment and domain information |
|---|
Probab=98.05 E-value=8.5e-06 Score=93.28 Aligned_cols=152 Identities=16% Similarity=0.186 Sum_probs=110.0
Q ss_pred EEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCcc
Q psy9598 634 ATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKE 713 (1915)
Q Consensus 634 asgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~ 713 (1915)
++.+.+..|-+-++.+... ..+ ...+.|.++.|...+++++.|+..|.|..+|++... .+...
T Consensus 228 fs~G~sqqv~L~nvetg~~----qsf-~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rn------------qG~~~ 290 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQ----QSF-QSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRN------------QGNGW 290 (425)
T ss_pred ecccccceeEEEEeecccc----ccc-ccchhHHHHHhcccCCeeEecccCCcEEEEEeeecc------------cCCCc
Confidence 4445556677778743221 112 256789999999999999999999999999998762 00111
Q ss_pred ccccccccccEEEEEECC-CCCEEEEEEecCCeEEEEECCCCce---EEEeeCCCCCeEEEE--EccCCCCEEEEEecCc
Q psy9598 714 TSDETNKKIKVTMVAWDA-SDRWVITAINFNFQIKIWDAFNGDL---VQVLKGHTNEVFVLE--SHPFDSRVLLSAGHDG 787 (1915)
Q Consensus 714 ~~~~~~~~~~V~~va~sp-dg~~L~t~s~~Dg~I~vwD~~tg~~---i~~l~gH~~~V~sl~--~sp~dg~~LaSgs~DG 787 (1915)
.....-|...|+++..-. ++.+|++++. +|.|++||++--++ +.++.||.+.-.-+- +++ ....++++|.|.
T Consensus 291 ~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M-~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~-eeg~I~s~GdDc 368 (425)
T KOG2695|consen 291 CAQRLYHDSSVTSLQILQFSQQKLMASDM-TGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKE-EEGSIFSVGDDC 368 (425)
T ss_pred ceEEEEcCcchhhhhhhccccceEeeccC-cCceeEeeehhhhcccceeeeeccccccccccccccc-ccceEEEccCee
Confidence 111223667788877666 7888888877 99999999987777 999999976544443 345 566888899999
Q ss_pred eEEEEECCCCccccceeee
Q psy9598 788 LIIIWDILSSKQRGYKWFH 806 (1915)
Q Consensus 788 ~I~IWdl~s~~~~~~~~~~ 806 (1915)
..+||.+..+.. +.++.
T Consensus 369 ytRiWsl~~ghL--l~tip 385 (425)
T KOG2695|consen 369 YTRIWSLDSGHL--LCTIP 385 (425)
T ss_pred EEEEEecccCce--eeccC
Confidence 999999999887 55443
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.0017 Score=81.01 Aligned_cols=301 Identities=13% Similarity=0.093 Sum_probs=155.4
Q ss_pred cCCCCEEEEEE---------CCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEE
Q psy9598 485 DKLGEVIVTGA---------DDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISV 555 (1915)
Q Consensus 485 spdg~~LaTGs---------~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~ 555 (1915)
|||+++++... ..+.+.|||+.++........ ...+....|||+|+.||... ++.|.++++.++...+.
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~l 78 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQL 78 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEES
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEe
Confidence 57888877642 346799999999876654433 56788999999999999886 67899999887754432
Q ss_pred e-ec-------C---------CCCeEEEEeccCccCCCcEEEEEe-CCCeEEEEecccCccccceeccCccccccccCCC
Q psy9598 556 L-VG-------H---------QGIITGVNFCPLEVNGFNYLASTS-TDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPG 617 (1915)
Q Consensus 556 l-~~-------h---------~~~V~sl~fsp~~~~d~~~L~sgs-~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~ 617 (1915)
- .| - -+.-.++-|+|++ ++|+... .+..|..+.+........ .
T Consensus 79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~----~~la~~~~d~~~v~~~~~~~~~~~~~---------------~ 139 (353)
T PF00930_consen 79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDS----KYLAFLRFDEREVPEYPLPDYSPPDS---------------Q 139 (353)
T ss_dssp ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTS----SEEEEEEEE-TTS-EEEEEEESSSTE---------------S
T ss_pred ccccceeEEcCccceeccccccccccceEECCCC----CEEEEEEECCcCCceEEeeccCCccc---------------c
Confidence 2 12 0 1223567789854 5655544 344444443321100000 0
Q ss_pred CCceEEEEECCCCcEEEEEeCCC--eEEEEEecCCCCCceeEEe---ccCCCCeeEEEEcCCCCEEEEEe--CCC---cE
Q psy9598 618 NAHILCSSFSPGGLFLATGSGDH--HVRVYKMDGVDSPLGILEV---EEHSDKVDSIQWSHSHLRFVSGS--RDG---TA 687 (1915)
Q Consensus 618 ~~~V~~l~fspdg~~Lasgs~Dg--~I~IwDl~~~~~~~~i~~l---~~h~~~V~sl~fspdg~~L~sgs--~DG---~I 687 (1915)
.-.+..+.+-.-| ..+. .+.|+++.+.... .+... ..-...+..+.|.+++..|+..- .+. .+
T Consensus 140 yp~~~~~~YPk~G------~~np~v~l~v~~~~~~~~~-~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l 212 (353)
T PF00930_consen 140 YPEVESIRYPKAG------DPNPRVSLFVVDLASGKTT-ELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDL 212 (353)
T ss_dssp S-EEEEEE--BTT------S---EEEEEEEESSSTCCC-EE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEE
T ss_pred CCcccccccCCCC------CcCCceEEEEEECCCCcEE-EeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEE
Confidence 0122333332222 2222 3556777433321 22211 23455688999999988444433 332 36
Q ss_pred EEEEccCCceEEeeecccccCCCCccccccccccccEEEEEE-CCCCCEEEEEEecCCe--EEEEECCCCceEEEeeCCC
Q psy9598 688 LIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAW-DASDRWVITAINFNFQ--IKIWDAFNGDLVQVLKGHT 764 (1915)
Q Consensus 688 ~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~-spdg~~L~t~s~~Dg~--I~vwD~~tg~~i~~l~gH~ 764 (1915)
.++|..++.+......... . --.....+.| .+++..++..+..+|. |.+++...+. ...+....
T Consensus 213 ~~~d~~tg~~~~~~~e~~~---~---------Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~ 279 (353)
T PF00930_consen 213 VLCDASTGETRVVLEETSD---G---------WVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLTSGD 279 (353)
T ss_dssp EEEEECTTTCEEEEEEESS---S---------SSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS-SS
T ss_pred EEEECCCCceeEEEEecCC---c---------ceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccc-eeccccCc
Confidence 6667776654433311110 0 0011123344 3666665555555774 5556665555 44555455
Q ss_pred CCeEE-EEEccCCCCEEEEEecCc----eEEEEECC-CCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEEeC
Q psy9598 765 NEVFV-LESHPFDSRVLLSAGHDG----LIIIWDIL-SSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDS 834 (1915)
Q Consensus 765 ~~V~s-l~~sp~dg~~LaSgs~DG----~I~IWdl~-s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~ 834 (1915)
-.|.. +.|.+..+.++++|..++ .|+.-++. .+.. ..+. .. .+.-..+.|||+|++++..++
T Consensus 280 ~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~---~~LT---~~--~~~~~~~~~Spdg~y~v~~~s 347 (353)
T PF00930_consen 280 WEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEP---KCLT---CE--DGDHYSASFSPDGKYYVDTYS 347 (353)
T ss_dssp S-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEE---EESS---TT--SSTTEEEEE-TTSSEEEEEEE
T ss_pred eeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCe---Eecc---CC--CCCceEEEECCCCCEEEEEEc
Confidence 56744 567774455556666533 45555565 3332 2222 11 112278999999999887654
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >KOG2066|consensus | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00022 Score=90.27 Aligned_cols=189 Identities=19% Similarity=0.200 Sum_probs=128.0
Q ss_pred CCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCcc
Q psy9598 519 GEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDID 598 (1915)
Q Consensus 519 ~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~ 598 (1915)
..|+|++++ +.+|+-|+.+|.|++.+.+. .+ .+...|+.. + .+|.++++||.||+|.|..+.+...
T Consensus 40 D~is~~av~--~~~~~~GtH~g~v~~~~~~~-~~-~~~~~~s~~--------~--~~Gey~asCS~DGkv~I~sl~~~~~ 105 (846)
T KOG2066|consen 40 DAISCCAVH--DKFFALGTHRGAVYLTTCQG-NP-KTNFDHSSS--------I--LEGEYVASCSDDGKVVIGSLFTDDE 105 (846)
T ss_pred hHHHHHHhh--cceeeeccccceEEEEecCC-cc-ccccccccc--------c--cCCceEEEecCCCcEEEeeccCCcc
Confidence 456677765 56899999999999999763 33 333344433 1 2679999999999999999988877
Q ss_pred ccceeccCccccccccCCCCCceEEEEECCC-----CcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcC
Q psy9598 599 ISKTVFHEPVMFNERIRPGNAHILCSSFSPG-----GLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSH 673 (1915)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~V~~l~fspd-----g~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fsp 673 (1915)
.....+. .++.+++++|+ .+.+++||.-| +.++.-.-.+....+ .+....++|.+|.|.
T Consensus 106 ~~~~df~-------------rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-~l~~~eG~I~~i~W~- 169 (846)
T KOG2066|consen 106 ITQYDFK-------------RPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-VLSEGEGPIHSIKWR- 169 (846)
T ss_pred ceeEecC-------------CcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce-eeecCccceEEEEec-
Confidence 6666666 66889999997 46789999988 777764222222222 466778999999996
Q ss_pred CCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECC
Q psy9598 674 SHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAF 752 (1915)
Q Consensus 674 dg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~ 752 (1915)
|+++|-++.+| |+|||+.+.+.+....... .......--..+.|.++.+.++ |- ..+|+|..++
T Consensus 170 -g~lIAWand~G-v~vyd~~~~~~l~~i~~p~----------~~~R~e~fpphl~W~~~~~LVI-GW--~d~v~i~~I~ 233 (846)
T KOG2066|consen 170 -GNLIAWANDDG-VKVYDTPTRQRLTNIPPPS----------QSVRPELFPPHLHWQDEDRLVI-GW--GDSVKICSIK 233 (846)
T ss_pred -CcEEEEecCCC-cEEEeccccceeeccCCCC----------CCCCcccCCCceEecCCCeEEE-ec--CCeEEEEEEe
Confidence 66777776665 8999998877443221110 1111222334588887665554 32 3478887765
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.0022 Score=76.45 Aligned_cols=280 Identities=13% Similarity=0.146 Sum_probs=156.9
Q ss_pred CcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeC----------CCcEEEEECCCCceEEEeecCCC-C----
Q psy9598 498 LLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTV----------DKTIRIWNLQTLAPISVLVGHQG-I---- 562 (1915)
Q Consensus 498 g~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~----------DgtIrVWDl~tg~~~~~l~~h~~-~---- 562 (1915)
+.|.|+|..+++.+..+.+ +-.-.+.++|+++.+++++. .-.|.+||..+..+...+.--.+ .
T Consensus 17 ~rv~viD~d~~k~lGmi~~--g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~ 94 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDT--GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV 94 (342)
T ss_dssp EEEEEEETTTTEEEEEEEE--ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred ceEEEEECCCCcEEEEeec--ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence 4799999999998888763 23344678999999887542 34699999999988875543222 1
Q ss_pred --eEEEEeccCccCCCcEEEEE--eCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCC-CcEEEEEe
Q psy9598 563 --ITGVNFCPLEVNGFNYLAST--STDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPG-GLFLATGS 637 (1915)
Q Consensus 563 --V~sl~fsp~~~~d~~~L~sg--s~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspd-g~~Lasgs 637 (1915)
...++++. ++++++.. +--.+|.|.|+...+.+..+... + |...-|. ..-+.+-|
T Consensus 95 ~~~~~~~ls~----dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P-----------G-----C~~iyP~~~~~F~~lC 154 (342)
T PF06433_consen 95 PYKNMFALSA----DGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP-----------G-----CWLIYPSGNRGFSMLC 154 (342)
T ss_dssp --GGGEEE-T----TSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT-----------S-----EEEEEEEETTEEEEEE
T ss_pred ccccceEEcc----CCcEEEEEccCCCCeEEEEECCCCceeeeecCC-----------C-----EEEEEecCCCceEEEe
Confidence 11223333 22333332 22344555555555433222221 1 2222332 24577888
Q ss_pred CCCeEEEEEecCCCCCceeEE--eccCCCCe-eEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccc
Q psy9598 638 GDHHVRVYKMDGVDSPLGILE--VEEHSDKV-DSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKET 714 (1915)
Q Consensus 638 ~Dg~I~IwDl~~~~~~~~i~~--l~~h~~~V-~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~ 714 (1915)
.||.+....++.........+ +..-..++ ..-++...+..++--+..|.|+--|+.......... . .... ...
T Consensus 155 ~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~-~-~~~t--~~e 230 (342)
T PF06433_consen 155 GDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKP-W-SLLT--DAE 230 (342)
T ss_dssp TTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEE-E-ESS---HHH
T ss_pred cCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCc-c-cccC--ccc
Confidence 999999988864433221111 11112222 233344555566667889999988887765322110 0 0000 000
Q ss_pred cccccccccEEEEEECCCCCEEEEEEec--CC-------eEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEE-e
Q psy9598 715 SDETNKKIKVTMVAWDASDRWVITAINF--NF-------QIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSA-G 784 (1915)
Q Consensus 715 ~~~~~~~~~V~~va~spdg~~L~t~s~~--Dg-------~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSg-s 784 (1915)
....-..+...-+++++....|++.... +| .|.+||+.+++.+..+... ..+.+|.++..+..+|++. .
T Consensus 231 ~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~-~~~~Si~Vsqd~~P~L~~~~~ 309 (342)
T PF06433_consen 231 KADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE-HPIDSIAVSQDDKPLLYALSA 309 (342)
T ss_dssp HHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEE-EEESEEEEESSSS-EEEEEET
T ss_pred cccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCC-CccceEEEccCCCcEEEEEcC
Confidence 0011122333447777766666654330 11 4899999999999998742 3477899998555577655 4
Q ss_pred cCceEEEEECCCCccccceeee
Q psy9598 785 HDGLIIIWDILSSKQRGYKWFH 806 (1915)
Q Consensus 785 ~DG~I~IWdl~s~~~~~~~~~~ 806 (1915)
.+|.|.|||..+|+. +..+.
T Consensus 310 ~~~~l~v~D~~tGk~--~~~~~ 329 (342)
T PF06433_consen 310 GDGTLDVYDAATGKL--VRSIE 329 (342)
T ss_dssp TTTEEEEEETTT--E--EEEE-
T ss_pred CCCeEEEEeCcCCcE--Eeehh
Confidence 589999999999988 66554
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG4649|consensus | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.0087 Score=66.98 Aligned_cols=104 Identities=14% Similarity=0.082 Sum_probs=73.1
Q ss_pred CCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEE
Q psy9598 487 LGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGV 566 (1915)
Q Consensus 487 dg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl 566 (1915)
-|.+++.|+..|.+.+.++.||..+..+.....--......+++.++..|+.|++....|..+..++...+...+...+-
T Consensus 62 vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP 141 (354)
T KOG4649|consen 62 VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSP 141 (354)
T ss_pred ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccc
Confidence 37889999999999999999998887775433222334557789999999999999999999988888876444333333
Q ss_pred EeccCccCCCcEEEEEeCCCeEEEEecc
Q psy9598 567 NFCPLEVNGFNYLASTSTDGCIGFWKYK 594 (1915)
Q Consensus 567 ~fsp~~~~d~~~L~sgs~DgtI~iWDl~ 594 (1915)
+..| ....|+.+...|.|.--...
T Consensus 142 ~i~~----g~~sly~a~t~G~vlavt~~ 165 (354)
T KOG4649|consen 142 VIAP----GDGSLYAAITAGAVLAVTKN 165 (354)
T ss_pred eecC----CCceEEEEeccceEEEEccC
Confidence 3444 12445555555655444433
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.0022 Score=81.84 Aligned_cols=227 Identities=7% Similarity=-0.060 Sum_probs=127.0
Q ss_pred CCCEEEEEeC-CCcEEEEECCCCceEEEeec-CCCCeEEEEec--cCc-------------cCCCcEEE-EEeCCCeEEE
Q psy9598 529 RNILLAAGTV-DKTIRIWNLQTLAPISVLVG-HQGIITGVNFC--PLE-------------VNGFNYLA-STSTDGCIGF 590 (1915)
Q Consensus 529 dg~~LaSgs~-DgtIrVWDl~tg~~~~~l~~-h~~~V~sl~fs--p~~-------------~~d~~~L~-sgs~DgtI~i 590 (1915)
||++|+.-.. +..|-..++...++-..+.- ....+.+++|- |.. ++++..+. +.-..+.+.+
T Consensus 140 dGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSv 219 (635)
T PRK02888 140 DGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTA 219 (635)
T ss_pred ceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEEE
Confidence 6788887663 55666667766555433321 11222233332 211 01333332 2223455666
Q ss_pred EecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCC----eEEEEEecCCCCCceeEEeccCCCCe
Q psy9598 591 WKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDH----HVRVYKMDGVDSPLGILEVEEHSDKV 666 (1915)
Q Consensus 591 WDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg----~I~IwDl~~~~~~~~i~~l~~h~~~V 666 (1915)
.|..+.....++... +...-+.++++|.++++.+.+. ++...+.. ... .+..+.- ..+
T Consensus 220 ID~etmeV~~qV~Vd-------------gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~--e~d-~~vvfni--~~i 281 (635)
T PRK02888 220 VDAETMEVAWQVMVD-------------GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAA--ERD-WVVVFNI--ARI 281 (635)
T ss_pred EECccceEEEEEEeC-------------CCcccceECCCCCEEEEeccCcccCcceeeeccc--cCc-eEEEEch--HHH
Confidence 666655443333332 2345678899999988876422 22222221 100 0100000 000
Q ss_pred eEEEEcCCCCEEEEEeCCCcEEEEEccC----C-ceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEe
Q psy9598 667 DSIQWSHSHLRFVSGSRDGTALIWYYKC----S-QWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAIN 741 (1915)
Q Consensus 667 ~sl~fspdg~~L~sgs~DG~I~IWDl~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~ 741 (1915)
.++.++|++... .++.|.+.|..+ + ..... ..-......+.++|||+++++++.
T Consensus 282 --ea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~y-----------------IPVGKsPHGV~vSPDGkylyVank 340 (635)
T PRK02888 282 --EEAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRY-----------------VPVPKNPHGVNTSPDGKYFIANGK 340 (635)
T ss_pred --HHhhhCCCEEEE--CCCEEEEEECCccccCCcceEEE-----------------EECCCCccceEECCCCCEEEEeCC
Confidence 023456776665 367899999887 2 21111 112334566899999999999998
Q ss_pred cCCeEEEEECCCCce------------EEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCC
Q psy9598 742 FNFQIKIWDAFNGDL------------VQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILS 796 (1915)
Q Consensus 742 ~Dg~I~vwD~~tg~~------------i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s 796 (1915)
.+.+|.|+|+.+.+. +....--.++ ...+|.+ +|....|..-|..|..|++..
T Consensus 341 lS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGP-LHTaFDg-~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 341 LSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGP-LHTAFDG-RGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCc-ceEEECC-CCCEEEeEeecceeEEEehHH
Confidence 899999999987542 3333332233 4567888 788888888999999999976
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.015 Score=72.81 Aligned_cols=76 Identities=20% Similarity=0.288 Sum_probs=63.2
Q ss_pred CCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEEeCCCeEEEE
Q psy9598 762 GHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVY 841 (1915)
Q Consensus 762 gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~dG~I~Iw 841 (1915)
...+.|.+++++| +...|+.|+.||+|.+||...+.. . +. ...-.++.++|+|+|.+|++|+.-|.|.+|
T Consensus 257 pL~s~v~~ca~sp-~E~kLvlGC~DgSiiLyD~~~~~t--~--~~-----ka~~~P~~iaWHp~gai~~V~s~qGelQ~F 326 (545)
T PF11768_consen 257 PLPSQVICCARSP-SEDKLVLGCEDGSIILYDTTRGVT--L--LA-----KAEFIPTLIAWHPDGAIFVVGSEQGELQCF 326 (545)
T ss_pred ecCCcceEEecCc-ccceEEEEecCCeEEEEEcCCCee--e--ee-----eecccceEEEEcCCCcEEEEEcCCceEEEE
Confidence 5677899999999 889999999999999999977643 1 11 123457889999999999999999999999
Q ss_pred eCCCCc
Q psy9598 842 GLGGFK 847 (1915)
Q Consensus 842 dl~s~~ 847 (1915)
|+.-+-
T Consensus 327 D~ALsp 332 (545)
T PF11768_consen 327 DMALSP 332 (545)
T ss_pred EeecCc
Confidence 998543
|
|
| >KOG3621|consensus | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.002 Score=81.11 Aligned_cols=146 Identities=13% Similarity=0.191 Sum_probs=98.1
Q ss_pred CCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEE-eecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEeccc
Q psy9598 517 CSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISV-LVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKL 595 (1915)
Q Consensus 517 H~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~-l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~ 595 (1915)
|...|.--+++..+.+|+.|+.-|.|.+|+-.++..... ..+..+.+..+..+++. .++|.|+..|.|.++.+..
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e----~lvAagt~~g~V~v~ql~~ 107 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVE----YLVAAGTASGRVSVFQLNK 107 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchh----HhhhhhcCCceEEeehhhc
Confidence 344555556778889999999999999999877654332 22344556666777643 7888899999999998876
Q ss_pred CccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecC-CCCCceeEEeccCCCCeeEEEEc
Q psy9598 596 DIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDG-VDSPLGILEVEEHSDKVDSIQWS 672 (1915)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~-~~~~~~i~~l~~h~~~V~sl~fs 672 (1915)
........+. ..-..|...|+|++|++++..|++|...|.|.+-.++. .........+....+.|..|.+.
T Consensus 108 ~~p~~~~~~t------~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~ 179 (726)
T KOG3621|consen 108 ELPRDLDYVT------PCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL 179 (726)
T ss_pred cCCCcceeec------cccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc
Confidence 4322111111 11113678999999999999999999999999988854 11112222333345566666554
|
|
| >KOG1008|consensus | Back alignment and domain information |
|---|
Probab=97.84 E-value=1.2e-05 Score=98.53 Aligned_cols=201 Identities=14% Similarity=0.220 Sum_probs=129.2
Q ss_pred CCcEEEEEEcCC--CCEEEEEECCCcEEEEECCCCcE--EEEEeCCCCCEEEEEEeC-CCCEEEEEe----CCCcEEEEE
Q psy9598 476 LSAVFCVLFDKL--GEVIVTGADDLLIKLWRARDGKL--LATLRGCSGEISDIAIDN-RNILLAAGT----VDKTIRIWN 546 (1915)
Q Consensus 476 ~~~V~~vafspd--g~~LaTGs~Dg~I~IWd~~tg~~--~~~l~gH~~~I~~Lafsp-dg~~LaSgs----~DgtIrVWD 546 (1915)
...+.|+++.-+ ..++++|..+|.|.+-.+....- .....+|...+++++|++ |.++||+|- .|..+.|||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 345667776543 35788999999999988754322 234567888999999998 556777773 367899999
Q ss_pred CCCC--ceE--EEeec-CCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCce
Q psy9598 547 LQTL--API--SVLVG-HQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHI 621 (1915)
Q Consensus 547 l~tg--~~~--~~l~~-h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V 621 (1915)
+.++ .+. ..+.+ -.....+++|.. +..++++|.....+.++|++..... ...+. +..+
T Consensus 136 i~s~ltvPke~~~fs~~~l~gqns~cwlr----d~klvlaGm~sr~~~ifdlRqs~~~-~~svn------------Tk~v 198 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSSSTLDGQNSVCWLR----DTKLVLAGMTSRSVHIFDLRQSLDS-VSSVN------------TKYV 198 (783)
T ss_pred cccccCCCccccccccccccCcccccccc----Ccchhhcccccchhhhhhhhhhhhh-hhhhh------------hhhc
Confidence 9876 222 12222 334566788875 4488999999999999998743211 11111 1345
Q ss_pred EEEEECC-CCcEEEEEeCCCeEEEEE-ecCCCCCceeEEe--ccCCCCeeEEEEcCCCC-EEEEEe-CCCcEEEEEccC
Q psy9598 622 LCSSFSP-GGLFLATGSGDHHVRVYK-MDGVDSPLGILEV--EEHSDKVDSIQWSHSHL-RFVSGS-RDGTALIWYYKC 694 (1915)
Q Consensus 622 ~~l~fsp-dg~~Lasgs~Dg~I~IwD-l~~~~~~~~i~~l--~~h~~~V~sl~fspdg~-~L~sgs-~DG~I~IWDl~~ 694 (1915)
..+.+.| .++++++-. ||.|.+|| ......+..+..- ......+..++|+|... .+++.+ ..++|+++|+..
T Consensus 199 qG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 199 QGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred ccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 6677888 666776654 99999999 3332222221110 11122489999999643 344444 557899998763
|
|
| >KOG3621|consensus | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0019 Score=81.38 Aligned_cols=117 Identities=18% Similarity=0.216 Sum_probs=91.1
Q ss_pred CCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEE-EeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceE
Q psy9598 475 HLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLAT-LRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPI 553 (1915)
Q Consensus 475 H~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~-l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~ 553 (1915)
|...|.--+++..+.+|+.|+.-|.|.+|+-.++..... ..|..+.+..+.++++..++|+|+..|.|.|+-++.+.+-
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~ 111 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR 111 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence 345555566777899999999999999999887765443 3345566777788999999999999999999988764331
Q ss_pred ---EEe---ecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEeccc
Q psy9598 554 ---SVL---VGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKL 595 (1915)
Q Consensus 554 ---~~l---~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~ 595 (1915)
..- ..|...|++++|++ ++..|++|...|.|.+-.+.+
T Consensus 112 ~~~~~t~~d~~~~~rVTal~Ws~----~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 112 DLDYVTPCDKSHKCRVTALEWSK----NGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred cceeeccccccCCceEEEEEecc----cccEEeecCCCceEEEEEech
Confidence 111 23778999999999 458999999999999887776
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.008 Score=71.02 Aligned_cols=248 Identities=15% Similarity=0.144 Sum_probs=147.2
Q ss_pred EEEEeccCccCCCcEEEEEeCCCe-EEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEe-----
Q psy9598 564 TGVNFCPLEVNGFNYLASTSTDGC-IGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGS----- 637 (1915)
Q Consensus 564 ~sl~fsp~~~~d~~~L~sgs~Dgt-I~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs----- 637 (1915)
..++.+|. ....++.+-.-|+ +.+||..++.....+... -...+.+| .+||+||++|++.-
T Consensus 8 H~~a~~p~---~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~----~gRHFyGH------g~fs~dG~~LytTEnd~~~ 74 (305)
T PF07433_consen 8 HGVAAHPT---RPEAVAFARRPGTFALVFDCRTGQLLQRLWAP----PGRHFYGH------GVFSPDGRLLYTTENDYET 74 (305)
T ss_pred cceeeCCC---CCeEEEEEeCCCcEEEEEEcCCCceeeEEcCC----CCCEEecC------EEEcCCCCEEEEeccccCC
Confidence 35666773 3467777777664 678899888765444322 12223334 68999999999864
Q ss_pred CCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeC-------CCcEEEEEccCCceEEeeecccccCCC
Q psy9598 638 GDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSR-------DGTALIWYYKCSQWRFIRLDMNTCLPH 710 (1915)
Q Consensus 638 ~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~-------DG~I~IWDl~~~~~~~~~~~~~~~~~~ 710 (1915)
..|.|-|||.. .....+.++..|.-.-..|.+.|+|..|+++-. .|..++ ++.+.+.-...++..+-...
T Consensus 75 g~G~IgVyd~~--~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kL-Nl~tM~psL~~ld~~sG~ll 151 (305)
T PF07433_consen 75 GRGVIGVYDAA--RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKL-NLDTMQPSLVYLDARSGALL 151 (305)
T ss_pred CcEEEEEEECc--CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceec-ChhhcCCceEEEecCCCcee
Confidence 35899999994 456778888888888888999999987776531 133333 33333322222211110000
Q ss_pred CccccccccccccEEEEEECCCCCEEEEEEecCC-------eEEEEECCCCceEEEee-------CCCCCeEEEEEccCC
Q psy9598 711 TKETSDETNKKIKVTMVAWDASDRWVITAINFNF-------QIKIWDAFNGDLVQVLK-------GHTNEVFVLESHPFD 776 (1915)
Q Consensus 711 ~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg-------~I~vwD~~tg~~i~~l~-------gH~~~V~sl~~sp~d 776 (1915)
.........+...|..++++.+|..++..-. .| .|-++.. +..+..+. .-.+.|-+|+++. +
T Consensus 152 ~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~-qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~-~ 227 (305)
T PF07433_consen 152 EQVELPPDLHQLSIRHLAVDGDGTVAFAMQY-QGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADR-D 227 (305)
T ss_pred eeeecCccccccceeeEEecCCCcEEEEEec-CCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEEeC-C
Confidence 0001111346778999999999877665443 33 2333332 33233332 2346799999999 7
Q ss_pred CCEE-EEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEEeCCCeEEEEe
Q psy9598 777 SRVL-LSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYG 842 (1915)
Q Consensus 777 g~~L-aSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~dG~I~Iwd 842 (1915)
+.++ +|+-.-|++.+||..++.. +.... ..-+..++-.+++ +++ ++..|.+....
T Consensus 228 g~~ia~tsPrGg~~~~~d~~tg~~--~~~~~-------l~D~cGva~~~~~-f~~-ssG~G~~~~~~ 283 (305)
T PF07433_consen 228 GRLIAVTSPRGGRVAVWDAATGRL--LGSVP-------LPDACGVAPTDDG-FLV-SSGQGQLIRLS 283 (305)
T ss_pred CCEEEEECCCCCEEEEEECCCCCE--eeccc-------cCceeeeeecCCc-eEE-eCCCccEEEcc
Confidence 7655 5555678999999999987 33221 2335556666666 444 44445544333
|
|
| >KOG1897|consensus | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.064 Score=70.35 Aligned_cols=343 Identities=13% Similarity=0.174 Sum_probs=183.0
Q ss_pred CCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEE-eCCCCCEEEEEEeCC------CCEEEEEeCCCcEEEEEC-
Q psy9598 476 LSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATL-RGCSGEISDIAIDNR------NILLAAGTVDKTIRIWNL- 547 (1915)
Q Consensus 476 ~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l-~gH~~~I~~Lafspd------g~~LaSgs~DgtIrVWDl- 547 (1915)
.+.+++.+.+.+...++.++.++.+....+..+.+..+. ......|.|+.++|- .++++.|.++..+.+.-.
T Consensus 487 p~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~ 566 (1096)
T KOG1897|consen 487 PGKITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFL 566 (1096)
T ss_pred CCceEEEEEeecceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEEC
Confidence 355666666666666777777777777777666532222 123568999999974 237888988776655433
Q ss_pred CCCceEEEe-ecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccc--e--ec-cCccccccccCCCCCce
Q psy9598 548 QTLAPISVL-VGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISK--T--VF-HEPVMFNERIRPGNAHI 621 (1915)
Q Consensus 548 ~tg~~~~~l-~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~--~--~~-~~~~~~~~~~~~~~~~V 621 (1915)
.....+... .+-..-..+|-++... .+..+|+++..||.+..|-+........ . .+ ..|..+..........|
T Consensus 567 pd~~~~~~~~l~~~~iPRSIl~~~~e-~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~v 645 (1096)
T KOG1897|consen 567 PDLILITHEQLSGEIIPRSILLTTFE-GDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAV 645 (1096)
T ss_pred CCcceeeeeccCCCccchheeeEEee-ccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEE
Confidence 333322222 1222222344444332 2468999999999998775544322111 1 11 12222222111112222
Q ss_pred EEEE------ECCCC------------------------cEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEE
Q psy9598 622 LCSS------FSPGG------------------------LFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQW 671 (1915)
Q Consensus 622 ~~l~------fspdg------------------------~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~f 671 (1915)
.|++ ++.++ ..|+++ ..+.+.+.-++... ...+.++. -......+++
T Consensus 646 fa~sdrP~viY~~n~kLv~spls~kev~~~c~f~s~a~~d~l~~~-~~~~l~i~tid~iq-kl~irtvp-l~~~prrI~~ 722 (1096)
T KOG1897|consen 646 FALSDRPTVIYSSNGKLVYSPLSLKEVNHMCPFNSDAYPDSLASA-NGGALTIGTIDEIQ-KLHIRTVP-LGESPRRICY 722 (1096)
T ss_pred EEeCCCCEEEEecCCcEEEeccchHHhhhhcccccccCCceEEEe-cCCceEEEEecchh-hcceeeec-CCCChhheEe
Confidence 2221 11111 223333 23456666553211 11222222 2334566777
Q ss_pred cCCCCEEEEEeCCC--------------cEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCC-CCEE
Q psy9598 672 SHSHLRFVSGSRDG--------------TALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDAS-DRWV 736 (1915)
Q Consensus 672 spdg~~L~sgs~DG--------------~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spd-g~~L 736 (1915)
.+....+++.+.-+ .++++|-.+.+.... ...........|.++.|..| +.++
T Consensus 723 q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~------------hef~~~E~~~Si~s~~~~~d~~t~~ 790 (1096)
T KOG1897|consen 723 QESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSS------------HEFERNETALSIISCKFTDDPNTYY 790 (1096)
T ss_pred cccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEee------------ccccccceeeeeeeeeecCCCceEE
Confidence 76555555544321 234444433332111 01111122345666668877 7777
Q ss_pred EEEEe---------cCCeEEEEECCCCceEEEeeCC--CCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceee
Q psy9598 737 ITAIN---------FNFQIKIWDAFNGDLVQVLKGH--TNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWF 805 (1915)
Q Consensus 737 ~t~s~---------~Dg~I~vwD~~tg~~i~~l~gH--~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~ 805 (1915)
++|.+ ..|.|.||.+..+..+..+..| .+.|.++..- +|++||. -...|+||+..+.+. ++.
T Consensus 791 vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~f--ngkllA~--In~~vrLye~t~~~e--Lr~- 863 (1096)
T KOG1897|consen 791 VVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEF--NGKLLAG--INQSVRLYEWTTERE--LRI- 863 (1096)
T ss_pred EEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhh--CCeEEEe--cCcEEEEEEccccce--ehh-
Confidence 77764 3577888877664444444333 3456665543 4666654 456899999988755 332
Q ss_pred eeeecCCCCcceEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q psy9598 806 HNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGG 845 (1915)
Q Consensus 806 ~~~~~~~~~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl~s 845 (1915)
...+..++..+...-.|..||+|+.-+.+.+.....
T Consensus 864 ----e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~ 899 (1096)
T KOG1897|consen 864 ----ECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKG 899 (1096)
T ss_pred ----hhcccCCeEEEEEEecCcEEEEeeccceEEEEEEec
Confidence 224557788888899999999999988887766554
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.011 Score=74.13 Aligned_cols=76 Identities=21% Similarity=0.290 Sum_probs=62.8
Q ss_pred CCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCC
Q psy9598 616 PGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCS 695 (1915)
Q Consensus 616 ~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~ 695 (1915)
+..+.|.|++++|+...|+.|+.||+|.+||.... +..+..+.-..+.++|+|+|..|++|+..|.+.+||+.-.
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~-----~t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRG-----VTLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCC-----eeeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 44578999999999999999999999999998432 2222334456788999999999999999999999998755
Q ss_pred c
Q psy9598 696 Q 696 (1915)
Q Consensus 696 ~ 696 (1915)
.
T Consensus 332 p 332 (545)
T PF11768_consen 332 P 332 (545)
T ss_pred c
Confidence 4
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.016 Score=73.39 Aligned_cols=252 Identities=12% Similarity=0.125 Sum_probs=129.6
Q ss_pred cEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCc
Q psy9598 541 TIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAH 620 (1915)
Q Consensus 541 tIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (1915)
.|.||+.. |..+..+.-..+.|.++.|+.. ..|++...||++++||+.... .+....... ...-....
T Consensus 62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~-----e~LvvV~~dG~v~vy~~~G~~---~fsl~~~i~---~~~v~e~~ 129 (410)
T PF04841_consen 62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTDD-----EELVVVQSDGTVRVYDLFGEF---QFSLGEEIE---EEKVLECR 129 (410)
T ss_pred EEEEECCC-CCEeEEEEECCCCEEEEEECCC-----CeEEEEEcCCEEEEEeCCCce---eechhhhcc---ccCccccc
Confidence 37777754 5555555433488999999863 578888899999999987443 111111110 00011122
Q ss_pred eEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCce---eEEecc-------CCCCeeEEEEcCCCCEEEEEeCCCcEEEE
Q psy9598 621 ILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLG---ILEVEE-------HSDKVDSIQWSHSHLRFVSGSRDGTALIW 690 (1915)
Q Consensus 621 V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~---i~~l~~-------h~~~V~sl~fspdg~~L~sgs~DG~I~IW 690 (1915)
+.+..+..+|-.+++ .++.|.+.. +...+.. ...+.. +........++.+....+....++.+.+-
T Consensus 130 i~~~~~~~~GivvLt--~~~~~~~v~--n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i 205 (410)
T PF04841_consen 130 IFAIWFYKNGIVVLT--GNNRFYVVN--NIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYII 205 (410)
T ss_pred ccccccCCCCEEEEC--CCCeEEEEe--CccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEE
Confidence 333344445633443 333333332 2121111 111111 11100012234444444444444555433
Q ss_pred EccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCC-CCCeEE
Q psy9598 691 YYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGH-TNEVFV 769 (1915)
Q Consensus 691 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH-~~~V~s 769 (1915)
+-.... .....+.+..+++||+|++|+.-.. +|.+.|....-.+.+..+... ......
T Consensus 206 ~~~~~~--------------------~i~~~~~i~~iavSpng~~iAl~t~-~g~l~v~ssDf~~~~~e~~~~~~~~p~~ 264 (410)
T PF04841_consen 206 DENSFK--------------------QIDSDGPIIKIAVSPNGKFIALFTD-SGNLWVVSSDFSEKLCEFDTDSKSPPKQ 264 (410)
T ss_pred Eccccc--------------------cccCCCCeEEEEECCCCCEEEEEEC-CCCEEEEECcccceeEEeecCcCCCCcE
Confidence 211100 0112457999999999999998887 899999987666666666543 334556
Q ss_pred EEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccc
Q psy9598 770 LESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGGFKRP 849 (1915)
Q Consensus 770 l~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl~s~~~~ 849 (1915)
+.|+. +..++++- ...|.+.... .. .+.|.-++..+++.-.|| |+|+.-...+.+
T Consensus 265 ~~WCG-~dav~l~~--~~~l~lvg~~------------------~~---~~~~~~~~~~~l~~E~DG-~riit~~~~~~l 319 (410)
T PF04841_consen 265 MAWCG-NDAVVLSW--EDELLLVGPD------------------GD---SISFWYDGPVILVSEIDG-VRIITSTSHEFL 319 (410)
T ss_pred EEEEC-CCcEEEEe--CCEEEEECCC------------------CC---ceEEeccCceEEeccCCc-eEEEeCCceEEE
Confidence 66654 22222222 2233332211 11 134444555666666666 788877776666
Q ss_pred ccCCC
Q psy9598 850 QNIPR 854 (1915)
Q Consensus 850 ~~l~~ 854 (1915)
..+|.
T Consensus 320 ~~Vp~ 324 (410)
T PF04841_consen 320 QRVPD 324 (410)
T ss_pred EECCH
Confidence 66665
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00091 Score=83.51 Aligned_cols=307 Identities=13% Similarity=0.123 Sum_probs=143.8
Q ss_pred cEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECC---------
Q psy9598 478 AVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQ--------- 548 (1915)
Q Consensus 478 ~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~--------- 548 (1915)
.|++|.|++...-|++|...|.|.||.+...+... ..-...-..+.+.+- ...++.-.|-|+.
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~--~~~~~~~~~~~~~~~------~~~~~~~~l~di~~r~~~~~~~ 74 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYG--NREQPPDLDYNFRRF------SLNNSPGKLTDISDRAPPSLKE 74 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE--------------------S--------GGGSS-SEEE-GGG--TT-SE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCC--ccCCCcccCcccccc------cccCCCcceEEehhhCCccccc
Confidence 58999999998999999999999999875432221 000011111121110 0011111222332
Q ss_pred CCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECC
Q psy9598 549 TLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSP 628 (1915)
Q Consensus 549 tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fsp 628 (1915)
...+...+....+.|++++.+.. .+++.|..+|++.|.|++....+....... ..........|+++.|+.
T Consensus 75 gf~P~~l~~~~~g~vtal~~S~i-----GFvaigy~~G~l~viD~RGPavI~~~~i~~----~~~~~~~~~~vt~ieF~v 145 (395)
T PF08596_consen 75 GFLPLTLLDAKQGPVTALKNSDI-----GFVAIGYESGSLVVIDLRGPAVIYNENIRE----SFLSKSSSSYVTSIEFSV 145 (395)
T ss_dssp EEEEEEEE---S-SEEEEEE-BT-----SEEEEEETTSEEEEEETTTTEEEEEEEGGG------T-SS----EEEEEEEE
T ss_pred ccCchhheeccCCcEeEEecCCC-----cEEEEEecCCcEEEEECCCCeEEeeccccc----cccccccccCeeEEEEEE
Confidence 12355566667899999999864 599999999999999998886655433332 111122346688888863
Q ss_pred -----CC---cEEEEEeCCCeEEEEEecCCCCCceeEEe----ccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCc
Q psy9598 629 -----GG---LFLATGSGDHHVRVYKMDGVDSPLGILEV----EEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQ 696 (1915)
Q Consensus 629 -----dg---~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l----~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~ 696 (1915)
|+ -.|++|+..|.+.+|.+.-.........+ ..+.+.|.. |...+..++.
T Consensus 146 m~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~------------------I~~i~~~~G~ 207 (395)
T PF08596_consen 146 MTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILS------------------IIPINADTGE 207 (395)
T ss_dssp EE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----E------------------EEEEETTT--
T ss_pred EecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEE------------------EEEEECCCCC
Confidence 33 47889999999999988311100000000 011122211 1222333332
Q ss_pred eEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCCCeEEEEEcc--
Q psy9598 697 WRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHP-- 774 (1915)
Q Consensus 697 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp-- 774 (1915)
...... .... .......+ ..+++++ + +..++|+...+.+..+......-.+.++++-+
T Consensus 208 ~a~At~---------~~~~-~l~~g~~i--------~g~vVvv-S-e~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~ 267 (395)
T PF08596_consen 208 SALATI---------SAMQ-GLSKGISI--------PGYVVVV-S-ESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTI 267 (395)
T ss_dssp B-B-BH---------HHHH-GGGGT------------EEEEEE---SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE
T ss_pred cccCch---------hHhh-ccccCCCc--------CcEEEEE-c-ccceEEEeCCCCcccceeeccccccceEEEEeec
Confidence 110000 0000 00011111 1133333 3 67899999988887766552222233344421
Q ss_pred --CCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEEeCCCeEEEEeC
Q psy9598 775 --FDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGL 843 (1915)
Q Consensus 775 --~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl 843 (1915)
..+..|++-..+|.|+++.+-.-+. +..+... .......+....|+++|..++..+.. .+.+|.+
T Consensus 268 ~~~~~~~Lv~l~~~G~i~i~SLP~Lke--i~~~~l~-~~~d~~~~~~ssis~~Gdi~~~~gps-E~~l~sv 334 (395)
T PF08596_consen 268 SRNGGYCLVCLFNNGSIRIYSLPSLKE--IKSVSLP-PPLDSRRLSSSSISRNGDIFYWTGPS-EIQLFSV 334 (395)
T ss_dssp -EEEEEEEEEEETTSEEEEEETTT--E--EEEEE-S-S---HHHHTT-EE-TTS-EEEE-SSS-EEEEEEE
T ss_pred ccCCceEEEEEECCCcEEEEECCCchH--hhcccCC-CccccccccccEECCCCCEEEEeCcc-cEEEEEE
Confidence 1466788889999999999987666 4444411 11122334566778899877766543 4444443
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >KOG3617|consensus | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00067 Score=85.31 Aligned_cols=109 Identities=20% Similarity=0.326 Sum_probs=79.6
Q ss_pred EEEEeccCccCCCcEEEEEe----CCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCC
Q psy9598 564 TGVNFCPLEVNGFNYLASTS----TDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGD 639 (1915)
Q Consensus 564 ~sl~fsp~~~~d~~~L~sgs----~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~D 639 (1915)
+-+.|+|.. .+|++++ ..|+|.||- .+|........ ...+++++|+|..-.|+.|-.-
T Consensus 19 ti~SWHPse----PlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~-------------P~hatSLCWHpe~~vLa~gwe~ 80 (1416)
T KOG3617|consen 19 TISSWHPSE----PLFAVASFSPERGGSVTIFA-DTGEPQRDVTY-------------PVHATSLCWHPEEFVLAQGWEM 80 (1416)
T ss_pred cccccCCCC----ceeEEEEecCCCCceEEEEe-cCCCCCccccc-------------ceehhhhccChHHHHHhhcccc
Confidence 445677755 4666655 457888883 34432111111 1346779999999899999999
Q ss_pred CeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEcc
Q psy9598 640 HHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYK 693 (1915)
Q Consensus 640 g~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~ 693 (1915)
|.+.+|.... ...-.....|..+|..+.||++|..|+++..-|.|.+|.+.
T Consensus 81 g~~~v~~~~~---~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 81 GVSDVQKTNT---TETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred ceeEEEecCC---ceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 9999999732 22233446799999999999999999999999999999765
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.084 Score=69.17 Aligned_cols=308 Identities=12% Similarity=0.064 Sum_probs=164.0
Q ss_pred CCEEEEEECCCcEEEEECCCCcEEEEEeCCC-CCEE---E-------EEEeCCCCEEEEEeCCCcEEEEECCCCceEEEe
Q psy9598 488 GEVIVTGADDLLIKLWRARDGKLLATLRGCS-GEIS---D-------IAIDNRNILLAAGTVDKTIRIWNLQTLAPISVL 556 (1915)
Q Consensus 488 g~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~-~~I~---~-------Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l 556 (1915)
+..|++++.++.|.-+|..+|+.+..+.... ..+. + +++ .+..|+.++.|+.|...|..+|+.+...
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~ 146 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSK 146 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeec
Confidence 5577778888899999999999988765321 1111 1 122 2346777888999999999999988765
Q ss_pred ecCC-CCeEEEEeccCccCCCcEEEEEeC------CCeEEEEecccCccccceeccCccc-------------c------
Q psy9598 557 VGHQ-GIITGVNFCPLEVNGFNYLASTST------DGCIGFWKYKLDIDISKTVFHEPVM-------------F------ 610 (1915)
Q Consensus 557 ~~h~-~~V~sl~fsp~~~~d~~~L~sgs~------DgtI~iWDl~~~~~~~~~~~~~~~~-------------~------ 610 (1915)
.... ..-..+.-+|.- .+ ..+++++. +|.|..+|..+++.+.......... .
T Consensus 147 ~~~~~~~~~~~tssP~v-~~-g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~ 224 (527)
T TIGR03075 147 KNGDYKAGYTITAAPLV-VK-GKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWP 224 (527)
T ss_pred ccccccccccccCCcEE-EC-CEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCC
Confidence 4211 000112222211 12 34555432 6899999999998765544321110 0
Q ss_pred ccccCCCCCce-EEEEECCCCcEEEEEeCC-----C-----------eEEEEEecCCCCCceeEEecc--CC-------C
Q psy9598 611 NERIRPGNAHI-LCSSFSPGGLFLATGSGD-----H-----------HVRVYKMDGVDSPLGILEVEE--HS-------D 664 (1915)
Q Consensus 611 ~~~~~~~~~~V-~~l~fspdg~~Lasgs~D-----g-----------~I~IwDl~~~~~~~~i~~l~~--h~-------~ 664 (1915)
......+.+.+ ..+++.+...+|..+..+ + .|.-.|+++ ....-.++. |. .
T Consensus 225 ~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~T---G~~~W~~Q~~~~D~wD~d~~~ 301 (527)
T TIGR03075 225 GDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDT---GKIKWHYQTTPHDEWDYDGVN 301 (527)
T ss_pred CCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEcccc---CCEEEeeeCCCCCCccccCCC
Confidence 00011111222 245777776677766643 2 333444422 222222222 21 1
Q ss_pred CeeEEEEcCCCC---EEEEEeCCCcEEEEEccCCceEEeee-----------cccccCCCCccc------------cccc
Q psy9598 665 KVDSIQWSHSHL---RFVSGSRDGTALIWYYKCSQWRFIRL-----------DMNTCLPHTKET------------SDET 718 (1915)
Q Consensus 665 ~V~sl~fspdg~---~L~sgs~DG~I~IWDl~~~~~~~~~~-----------~~~~~~~~~~~~------------~~~~ 718 (1915)
...-+.+..+|. .++.+..+|.+.+.|-.+++.+.... ++....+..... ....
T Consensus 302 ~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~P 381 (527)
T TIGR03075 302 EMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKTGRPIEVPEARSADGKKGKPVGVCP 381 (527)
T ss_pred CcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccCCCCCCCccChhhCcCCCCCCCeeEECC
Confidence 111122224665 77899999999999999998642100 000000000000 0000
Q ss_pred cc--cccEEEEEECCCCCEEEEEEec--------------------------------CCeEEEEECCCCceEEEeeCCC
Q psy9598 719 NK--KIKVTMVAWDASDRWVITAINF--------------------------------NFQIKIWDAFNGDLVQVLKGHT 764 (1915)
Q Consensus 719 ~~--~~~V~~va~spdg~~L~t~s~~--------------------------------Dg~I~vwD~~tg~~i~~l~gH~ 764 (1915)
+. ...-..++++|...++++.... -|.|.-||+.+|+.+-......
T Consensus 382 g~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~g~l~AiD~~tGk~~W~~~~~~ 461 (527)
T TIGR03075 382 GFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDDHMGSLIAWDPITGKIVWEHKEDF 461 (527)
T ss_pred CCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCCCCceeEEEEeCCCCceeeEecCCC
Confidence 00 0011235666666555544331 2457778888888777665322
Q ss_pred CCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeee
Q psy9598 765 NEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFH 806 (1915)
Q Consensus 765 ~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~ 806 (1915)
....+... - .+.+++.++.||.++.+|..+|+. +-.+.
T Consensus 462 p~~~~~l~-t-~g~lvf~g~~~G~l~a~D~~TGe~--lw~~~ 499 (527)
T TIGR03075 462 PLWGGVLA-T-AGDLVFYGTLEGYFKAFDAKTGEE--LWKFK 499 (527)
T ss_pred CCCCcceE-E-CCcEEEEECCCCeEEEEECCCCCE--eEEEe
Confidence 11111111 1 356777788899999999999998 55544
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.049 Score=65.23 Aligned_cols=249 Identities=12% Similarity=0.073 Sum_probs=143.1
Q ss_pred EEEcCCCCEEEEEEC----------CCcEEEEECCCCcEEEEEeCCC---C----CEEEEEEeCCCCEEEEEeC--CCcE
Q psy9598 482 VLFDKLGEVIVTGAD----------DLLIKLWRARDGKLLATLRGCS---G----EISDIAIDNRNILLAAGTV--DKTI 542 (1915)
Q Consensus 482 vafspdg~~LaTGs~----------Dg~I~IWd~~tg~~~~~l~gH~---~----~I~~Lafspdg~~LaSgs~--DgtI 542 (1915)
+.++|+|+.+++++. .-.|.+||..|......+.-.. . ....++++.||++++.... -.+|
T Consensus 41 ~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SV 120 (342)
T PF06433_consen 41 VALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSV 120 (342)
T ss_dssp EEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEE
T ss_pred eeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeE
Confidence 567899999887542 3379999999998877553221 1 2234678899998877643 4579
Q ss_pred EEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCce-
Q psy9598 543 RIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHI- 621 (1915)
Q Consensus 543 rVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V- 621 (1915)
.|-|+...+.+..+.-. + |....|.+ ..-|.+-|.||++.-..+.......... . ..+......+
T Consensus 121 tVVDl~~~kvv~ei~~P-G---C~~iyP~~---~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~-t------~~F~~~~dp~f 186 (342)
T PF06433_consen 121 TVVDLAAKKVVGEIDTP-G---CWLIYPSG---NRGFSMLCGDGSLLTVTLDADGKEAQKS-T------KVFDPDDDPLF 186 (342)
T ss_dssp EEEETTTTEEEEEEEGT-S---EEEEEEEE---TTEEEEEETTSCEEEEEETSTSSEEEEE-E------EESSTTTS-B-
T ss_pred EEEECCCCceeeeecCC-C---EEEEEecC---CCceEEEecCCceEEEEECCCCCEeEee-c------cccCCCCcccc
Confidence 99999988888776532 1 33334533 2568899999999999888443222111 0 1111222222
Q ss_pred EEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEecc----------CCCCeeEEEEcCCCCEEEEEeC--------
Q psy9598 622 LCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEE----------HSDKVDSIQWSHSHLRFVSGSR-------- 683 (1915)
Q Consensus 622 ~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~----------h~~~V~sl~fspdg~~L~sgs~-------- 683 (1915)
..-+++..+..++.-+.+|.|+-.|+.+.. ......+.- ..+.-.-+++++...+|++--.
T Consensus 187 ~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~-~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHK 265 (342)
T PF06433_consen 187 EHPAYSRDGGRLYFVSYEGNVYSADLSGDS-AKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHK 265 (342)
T ss_dssp S--EEETTTTEEEEEBTTSEEEEEEETTSS-EEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TT
T ss_pred cccceECCCCeEEEEecCCEEEEEeccCCc-ccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCcc
Confidence 223444455555557788999888884432 222222211 1123345677766555554321
Q ss_pred CCc--EEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCE-EEEEEecCCeEEEEECCCCceEEEe
Q psy9598 684 DGT--ALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRW-VITAINFNFQIKIWDAFNGDLVQVL 760 (1915)
Q Consensus 684 DG~--I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~-L~t~s~~Dg~I~vwD~~tg~~i~~l 760 (1915)
|+. |-++|+.+++.+... .....+.+|..+.+..- |++.+..++.|.|||..+|++++.+
T Consensus 266 dpgteVWv~D~~t~krv~Ri-----------------~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~ 328 (342)
T PF06433_consen 266 DPGTEVWVYDLKTHKRVARI-----------------PLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSI 328 (342)
T ss_dssp S-EEEEEEEETTTTEEEEEE-----------------EEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE
T ss_pred CCceEEEEEECCCCeEEEEE-----------------eCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeeh
Confidence 222 555566666644321 12235668999988774 4444444789999999999999988
Q ss_pred eC
Q psy9598 761 KG 762 (1915)
Q Consensus 761 ~g 762 (1915)
.+
T Consensus 329 ~~ 330 (342)
T PF06433_consen 329 EQ 330 (342)
T ss_dssp --
T ss_pred hc
Confidence 74
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.026 Score=73.61 Aligned_cols=294 Identities=10% Similarity=-0.014 Sum_probs=152.6
Q ss_pred CCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeE-E--EEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccC
Q psy9598 530 NILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIIT-G--VNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHE 606 (1915)
Q Consensus 530 g~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~-s--l~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~ 606 (1915)
+..|+.++.++.|...|..+|+.+..+........ + +.-.+....+...++.++.+|.|..+|..+++.+.......
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~ 140 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTFDGRLVALDAETGKQVWKFGNND 140 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecCCCeEEEEECCCCCEeeeecCCC
Confidence 34566677789999999999988776643322000 0 00000000122678888899999999999998766554432
Q ss_pred ccccccccCCCCCceE-EEEECCCCcEEEEEe---------CCCeEEEEEecCCCCCceeEEeccC--------------
Q psy9598 607 PVMFNERIRPGNAHIL-CSSFSPGGLFLATGS---------GDHHVRVYKMDGVDSPLGILEVEEH-------------- 662 (1915)
Q Consensus 607 ~~~~~~~~~~~~~~V~-~l~fspdg~~Lasgs---------~Dg~I~IwDl~~~~~~~~i~~l~~h-------------- 662 (1915)
... ....+. +..+. +..+++|+ .+|.|..+|..+.. .+......
T Consensus 141 ~~~-------~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~---~~W~~~~~~~~~~~~~~~~~~~ 208 (488)
T cd00216 141 QVP-------PGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGK---LLWRFYTTEPDPNAFPTWGPDR 208 (488)
T ss_pred CcC-------cceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCc---eeeEeeccCCCcCCCCCCCCCc
Confidence 110 000000 01111 13344443 35677777763322 22221110
Q ss_pred -----C-CCe-eEEEEcCCCCEEEEEeCCC------------------cEEEEEccCCceEEeeecccccCCCCcccccc
Q psy9598 663 -----S-DKV-DSIQWSHSHLRFVSGSRDG------------------TALIWYYKCSQWRFIRLDMNTCLPHTKETSDE 717 (1915)
Q Consensus 663 -----~-~~V-~sl~fspdg~~L~sgs~DG------------------~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~ 717 (1915)
. ..| .+.++.+.+.+++.++.++ .|.-+|+.+++.+-......... ...
T Consensus 209 ~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~------~~~ 282 (488)
T cd00216 209 QMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDL------WDY 282 (488)
T ss_pred ceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCC------ccc
Confidence 0 111 1234555566788887665 68888988888654331110000 000
Q ss_pred ccccc-cEEEEEECCCCC---EEEEEEecCCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEE----------
Q psy9598 718 TNKKI-KVTMVAWDASDR---WVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSA---------- 783 (1915)
Q Consensus 718 ~~~~~-~V~~va~spdg~---~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSg---------- 783 (1915)
..... .+..+. .-+|. .+++++. +|.+..+|..+|+.+....... ..++.+| ..++.+
T Consensus 283 ~~~s~p~~~~~~-~~~g~~~~~V~~g~~-~G~l~ald~~tG~~~W~~~~~~---~~~~~~~---~~vyv~~~~~~~~~~~ 354 (488)
T cd00216 283 DGPNQPSLADIK-PKDGKPVPAIVHAPK-NGFFYVLDRTTGKLISARPEVE---QPMAYDP---GLVYLGAFHIPLGLPP 354 (488)
T ss_pred ccCCCCeEEecc-ccCCCeeEEEEEECC-CceEEEEECCCCcEeeEeEeec---cccccCC---ceEEEccccccccCcc
Confidence 00111 111111 12333 4555555 8999999999999887654211 1122333 222221
Q ss_pred --------ecCceEEEEECCCCccccceeeeeeecCCCC----cceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccccc
Q psy9598 784 --------GHDGLIIIWDILSSKQRGYKWFHNIVEGQGE----GALFDGKWSPDGTTCALTDSYGHLLVYGLGGFKRPQN 851 (1915)
Q Consensus 784 --------s~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~----~~V~~vafSpdg~~Lasg~~dG~I~Iwdl~s~~~~~~ 851 (1915)
..+|.|.-.|+.+++. +-..... ..... ...........+..|++++.+|.|+.+|..+|+.+-.
T Consensus 355 ~~~~~~~~~~~G~l~AlD~~tG~~--~W~~~~~-~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW~ 431 (488)
T cd00216 355 QKKKRCKKPGKGGLAALDPKTGKV--VWEKREG-TIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTGKELWK 431 (488)
T ss_pred cccCCCCCCCceEEEEEeCCCCcE--eeEeeCC-ccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCCCceeeE
Confidence 2467888888888877 3333211 00000 1111111112567888899999999999999987655
Q ss_pred C
Q psy9598 852 I 852 (1915)
Q Consensus 852 l 852 (1915)
.
T Consensus 432 ~ 432 (488)
T cd00216 432 F 432 (488)
T ss_pred E
Confidence 4
|
The alignment model contains an 8-bladed beta-propeller. |
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.024 Score=72.82 Aligned_cols=240 Identities=9% Similarity=0.072 Sum_probs=132.3
Q ss_pred CCcEEEEEeC-CCeEEEEecccCccccceeccC---ccccccccCCCCCceEE-----EEECCCCcEEEE-EeCCCeEEE
Q psy9598 575 GFNYLASTST-DGCIGFWKYKLDIDISKTVFHE---PVMFNERIRPGNAHILC-----SSFSPGGLFLAT-GSGDHHVRV 644 (1915)
Q Consensus 575 d~~~L~sgs~-DgtI~iWDl~~~~~~~~~~~~~---~~~~~~~~~~~~~~V~~-----l~fspdg~~Las-gs~Dg~I~I 644 (1915)
+|++|+.-.. ++.|-..+++..++...+.... .+...-...+.+..|.| +=++++|..+.. .-..+.+.+
T Consensus 140 dGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSv 219 (635)
T PRK02888 140 DGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTA 219 (635)
T ss_pred ceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEEE
Confidence 5677777663 4555555555544332222221 11111111244455554 335667765533 333567777
Q ss_pred EEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCC----cEEEEEccCCceEEeeecccccCCCCccccccccc
Q psy9598 645 YKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDG----TALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNK 720 (1915)
Q Consensus 645 wDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG----~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 720 (1915)
.|..+. .....+.- .+....++++++|.++++++.+. ++..-+.....+.... .
T Consensus 220 ID~etm---eV~~qV~V-dgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvf------------------n 277 (635)
T PRK02888 220 VDAETM---EVAWQVMV-DGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVF------------------N 277 (635)
T ss_pred EECccc---eEEEEEEe-CCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEE------------------c
Confidence 777422 22222221 22446678999999988876422 2222221111110000 0
Q ss_pred cccEEEEEECCCCCEEEEEEecCCeEEEEECCC-----CceEEEeeCCCCCeEEEEEccCCCCEEEEEe-cCceEEEEEC
Q psy9598 721 KIKVTMVAWDASDRWVITAINFNFQIKIWDAFN-----GDLVQVLKGHTNEVFVLESHPFDSRVLLSAG-HDGLIIIWDI 794 (1915)
Q Consensus 721 ~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~t-----g~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs-~DG~I~IWdl 794 (1915)
... ...+.++|++...+ ++.|.|+|..+ ...+..+. -......|.++| |+.++++++ .+.+|.|.|+
T Consensus 278 i~~--iea~vkdGK~~~V~---gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSP-DGkylyVanklS~tVSVIDv 350 (635)
T PRK02888 278 IAR--IEEAVKAGKFKTIG---GSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSP-DGKYFIANGKLSPTVTVIDV 350 (635)
T ss_pred hHH--HHHhhhCCCEEEEC---CCEEEEEECCccccCCcceEEEEE-CCCCccceEECC-CCCEEEEeCCCCCcEEEEEC
Confidence 000 01334578877763 67899999988 34555554 334468899999 888776655 5899999999
Q ss_pred CCCccc------cceeeeeeecCCCCcceEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q psy9598 795 LSSKQR------GYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGG 845 (1915)
Q Consensus 795 ~s~~~~------~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl~s 845 (1915)
.+.+.. ....+..-+. .+.+ ....+|.++|....+...|..|..|++..
T Consensus 351 ~k~k~~~~~~~~~~~~vvaeve-vGlG-PLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 351 RKLDDLFDGKIKPRDAVVAEPE-LGLG-PLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred hhhhhhhhccCCccceEEEeec-cCCC-cceEEECCCCCEEEeEeecceeEEEehHH
Confidence 875420 0001110011 1223 34578999999888889999999999986
|
|
| >KOG1008|consensus | Back alignment and domain information |
|---|
Probab=97.49 E-value=5e-05 Score=93.36 Aligned_cols=210 Identities=18% Similarity=0.251 Sum_probs=131.5
Q ss_pred CceEEEEECCCC--cEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCC-CCEEEEEe----CCCcEEEEE
Q psy9598 619 AHILCSSFSPGG--LFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHS-HLRFVSGS----RDGTALIWY 691 (1915)
Q Consensus 619 ~~V~~l~fspdg--~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspd-g~~L~sgs----~DG~I~IWD 691 (1915)
..+.|++++-+. ..+++|..+|.|-+-.++.... .......+|....++++|++- .+.||.|- .|..+.|||
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hd-Ss~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHD-SSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCccc-ccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 456777776543 4788999999999998853322 223345678889999999875 34566653 456799999
Q ss_pred ccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCCCeEEEE
Q psy9598 692 YKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLE 771 (1915)
Q Consensus 692 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~ 771 (1915)
+.+.-.. |........ +......++||..+.+.|++|.. ...+.++|++.. +.......+..|..+.
T Consensus 136 i~s~ltv----------Pke~~~fs~-~~l~gqns~cwlrd~klvlaGm~-sr~~~ifdlRqs-~~~~~svnTk~vqG~t 202 (783)
T KOG1008|consen 136 INSLLTV----------PKESPLFSS-STLDGQNSVCWLRDTKLVLAGMT-SRSVHIFDLRQS-LDSVSSVNTKYVQGIT 202 (783)
T ss_pred cccccCC----------Ccccccccc-ccccCccccccccCcchhhcccc-cchhhhhhhhhh-hhhhhhhhhhhcccce
Confidence 9876311 111111111 23344568999988888888887 789999998721 1111112233466677
Q ss_pred EccCCCCEEEEEecCceEEEEEC-CCCccccceeeeeeecCCCCcceEEEEEcCC--CCEEEEEeCCCeEEEEeCCC
Q psy9598 772 SHPFDSRVLLSAGHDGLIIIWDI-LSSKQRGYKWFHNIVEGQGEGALFDGKWSPD--GTTCALTDSYGHLLVYGLGG 845 (1915)
Q Consensus 772 ~sp~dg~~LaSgs~DG~I~IWdl-~s~~~~~~~~~~~~~~~~~~~~V~~vafSpd--g~~Lasg~~dG~I~Iwdl~s 845 (1915)
+.|..++++++-. ||.|.+||. ..-+. .+..+. .-.......+..++|+|. |.+.+..-..++|+++++..
T Consensus 203 Vdp~~~nY~cs~~-dg~iAiwD~~rnien-pl~~i~-~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 203 VDPFSPNYFCSNS-DGDIAIWDTYRNIEN-PLQIIL-RNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred ecCCCCCceeccc-cCceeeccchhhhcc-HHHHHh-hCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 8887788888766 999999994 22111 011111 000111235899999994 44444445668899998763
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.16 Score=62.03 Aligned_cols=303 Identities=14% Similarity=0.126 Sum_probs=128.8
Q ss_pred ECCCCcEEEEEeCCCCCEEEE-----EEeCCCCEEEEEe-CCC--cEEEEECCCCceEEEeecCCCCeEEEEeccCccCC
Q psy9598 504 RARDGKLLATLRGCSGEISDI-----AIDNRNILLAAGT-VDK--TIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNG 575 (1915)
Q Consensus 504 d~~tg~~~~~l~gH~~~I~~L-----afspdg~~LaSgs-~Dg--tIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d 575 (1915)
|..||..+..|..+.+....+ +|.++|+.|+-++ .|| .+.+.|+.+++..+.-.+-........++|.
T Consensus 16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~---- 91 (386)
T PF14583_consen 16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPD---- 91 (386)
T ss_dssp -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TT----
T ss_pred CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecC----
Confidence 677888888886554433333 5677886555444 454 5677788888766655443333335556663
Q ss_pred CcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEE--CCCCcEEEEEeC---------------
Q psy9598 576 FNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSF--SPGGLFLATGSG--------------- 638 (1915)
Q Consensus 576 ~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~f--spdg~~Lasgs~--------------- 638 (1915)
.+.|+.......|.-.|+.+.+......+. ...+-...| +.++..++..-.
T Consensus 92 ~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p------------~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~ 159 (386)
T PF14583_consen 92 DRALYYVKNGRSLRRVDLDTLEERVVYEVP------------DDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFR 159 (386)
T ss_dssp SSEEEEEETTTEEEEEETTT--EEEEEE--------------TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHH
T ss_pred CCeEEEEECCCeEEEEECCcCcEEEEEECC------------cccccccceeeCCCccEEEEEEEeehhccCccccHHHH
Confidence 366665656667888888887532222222 122222333 334444332110
Q ss_pred -------CCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCC-----cEEEEEccCCceEEeeecccc
Q psy9598 639 -------DHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDG-----TALIWYYKCSQWRFIRLDMNT 706 (1915)
Q Consensus 639 -------Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG-----~I~IWDl~~~~~~~~~~~~~~ 706 (1915)
...|...|+.+ . ....+..-...+..+.|+|....+++=|..| .-+||-+.+.......
T Consensus 160 e~~~a~p~~~i~~idl~t---G-~~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~----- 230 (386)
T PF14583_consen 160 EFYEARPHCRIFTIDLKT---G-ERKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKK----- 230 (386)
T ss_dssp HHHHC---EEEEEEETTT------EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EE-----
T ss_pred HHHhhCCCceEEEEECCC---C-ceeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCccee-----
Confidence 11233333321 1 1223333456678889999877666655443 2477866543211100
Q ss_pred cCCCCccccccccccccEEEEEECCCCCEEEEEEe----cCCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEE
Q psy9598 707 CLPHTKETSDETNKKIKVTMVAWDASDRWVITAIN----FNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLS 782 (1915)
Q Consensus 707 ~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~----~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaS 782 (1915)
.. .......+..=-|.+||..|..-+. .+..|.-+|+.++........ ....-+-.++ ++.++|-
T Consensus 231 -------v~-~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~--p~~~H~~ss~-Dg~L~vG 299 (386)
T PF14583_consen 231 -------VH-RRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEM--PWCSHFMSSP-DGKLFVG 299 (386)
T ss_dssp -------SS----TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE---SEEEEEE-T-TSSEEEE
T ss_pred -------ee-cCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeC--CceeeeEEcC-CCCEEEe
Confidence 00 0112345566679999988765332 133577778888765433222 1233444456 7887765
Q ss_pred EecCc----------------eEEEEECCCCccccceeeee---eecCCCCcceEEEEEcCCCCEEEEE-eCCCeEEEEe
Q psy9598 783 AGHDG----------------LIIIWDILSSKQRGYKWFHN---IVEGQGEGALFDGKWSPDGTTCALT-DSYGHLLVYG 842 (1915)
Q Consensus 783 gs~DG----------------~I~IWdl~s~~~~~~~~~~~---~~~~~~~~~V~~vafSpdg~~Lasg-~~dG~I~Iwd 842 (1915)
=|.|. -|+|+++..+....+..... .+.+.....=....|+|||++|+.. +..|...||-
T Consensus 300 DG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~ 379 (386)
T PF14583_consen 300 DGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYL 379 (386)
T ss_dssp EE-------------------EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEE
T ss_pred cCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEE
Confidence 44442 45556666554311111100 0111111112346777777766554 3455555553
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.087 Score=64.32 Aligned_cols=275 Identities=13% Similarity=0.080 Sum_probs=123.5
Q ss_pred EEcCCCCEEEEEEC-CC--cEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecC
Q psy9598 483 LFDKLGEVIVTGAD-DL--LIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGH 559 (1915)
Q Consensus 483 afspdg~~LaTGs~-Dg--~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h 559 (1915)
+|.++|+.|+.++. || .+.+.|+.+++..+.-.+-........++++++.|+-......|+--|+.+.+....+...
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p 121 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVP 121 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECC
Confidence 46788866665554 55 5666688888766544433233335667788888876666678999999998877666666
Q ss_pred CCCeEEEEeccCccCCCcEEEEEeC---C-------------------CeEEEEecccCccccceeccCccccccccCCC
Q psy9598 560 QGIITGVNFCPLEVNGFNYLASTST---D-------------------GCIGFWKYKLDIDISKTVFHEPVMFNERIRPG 617 (1915)
Q Consensus 560 ~~~V~sl~fsp~~~~d~~~L~sgs~---D-------------------gtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~ 617 (1915)
...+-...|..+. +...++..-. | ..|...|+.++.. ..+...
T Consensus 122 ~~~~g~gt~v~n~--d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~-------------~~v~~~ 186 (386)
T PF14583_consen 122 DDWKGYGTWVANS--DCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGER-------------KVVFED 186 (386)
T ss_dssp TTEEEEEEEEE-T--TSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--E-------------EEEEEE
T ss_pred cccccccceeeCC--CccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCce-------------eEEEec
Confidence 6666667775432 3333332211 0 1112222222211 011112
Q ss_pred CCceEEEEECCCCcEEEEEeCCC-----eEEEEEecCCCCCceeEEeccCCC--CeeEEEEcCCCCEEEEEe-----CCC
Q psy9598 618 NAHILCSSFSPGGLFLATGSGDH-----HVRVYKMDGVDSPLGILEVEEHSD--KVDSIQWSHSHLRFVSGS-----RDG 685 (1915)
Q Consensus 618 ~~~V~~l~fspdg~~Lasgs~Dg-----~I~IwDl~~~~~~~~i~~l~~h~~--~V~sl~fspdg~~L~sgs-----~DG 685 (1915)
...+.-+.|+|....+++=|..| .-+||-++...... ..+..|.. .+..=-|.++|..|+--+ .+.
T Consensus 187 ~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~--~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~ 264 (386)
T PF14583_consen 187 TDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNV--KKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDF 264 (386)
T ss_dssp SS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS-----EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--E
T ss_pred CccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcc--eeeecCCCCcccccccccCCCCEEEEEeecCCCCce
Confidence 34566788898655555443322 23778775433222 22222322 223334888888654322 233
Q ss_pred cEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCC----------------eEEEE
Q psy9598 686 TALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNF----------------QIKIW 749 (1915)
Q Consensus 686 ~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg----------------~I~vw 749 (1915)
.|.-+|+.++...... .......+..+++|.+++.=++ |. .|+++
T Consensus 265 ~i~~~d~~t~~~~~~~------------------~~p~~~H~~ss~Dg~L~vGDG~-d~p~~v~~~~~~~~~~~p~i~~~ 325 (386)
T PF14583_consen 265 WIAGYDPDTGERRRLM------------------EMPWCSHFMSSPDGKLFVGDGG-DAPVDVADAGGYKIENDPWIYLF 325 (386)
T ss_dssp EEEEE-TTT--EEEEE------------------EE-SEEEEEE-TTSSEEEEEE--------------------EEEEE
T ss_pred EEEeeCCCCCCceEEE------------------eCCceeeeEEcCCCCEEEecCC-CCCccccccccceecCCcEEEEe
Confidence 4555566655422110 1112345666788877664443 32 56678
Q ss_pred ECCCCceEEE---------eeCCCC-CeEEEEEccCCCCEE-EEEecCceEEEEEC
Q psy9598 750 DAFNGDLVQV---------LKGHTN-EVFVLESHPFDSRVL-LSAGHDGLIIIWDI 794 (1915)
Q Consensus 750 D~~tg~~i~~---------l~gH~~-~V~sl~~sp~dg~~L-aSgs~DG~I~IWdl 794 (1915)
++..+..... +.+|.. .---..|+| |++.| ++....|...||-+
T Consensus 326 ~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSP-Dgk~VlF~Sd~~G~~~vY~v 380 (386)
T PF14583_consen 326 DVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSP-DGKWVLFRSDMEGPPAVYLV 380 (386)
T ss_dssp ETTTTEEEEEEE-------BTTBSSTT----EE-T-TSSEEEEEE-TTSS-EEEEE
T ss_pred ccccCceeeeeeccCcceeecCCCccCCCCCccCC-CCCEEEEECCCCCCccEEEE
Confidence 8876654321 112111 123467999 66654 45556777666644
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.19 Score=63.94 Aligned_cols=197 Identities=13% Similarity=0.056 Sum_probs=102.1
Q ss_pred EEEcCCCCEEEEEECC----------C-cEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCC
Q psy9598 482 VLFDKLGEVIVTGADD----------L-LIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTL 550 (1915)
Q Consensus 482 vafspdg~~LaTGs~D----------g-~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg 550 (1915)
++.+|.|..||....+ . .|.||+. .|+++.++.--.+.|.++.|+.+.. |+.-..||+++++|+. |
T Consensus 34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~e~-LvvV~~dG~v~vy~~~-G 110 (410)
T PF04841_consen 34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSS-SGKLLSSIPWDSGRIVGMGWTDDEE-LVVVQSDGTVRVYDLF-G 110 (410)
T ss_pred EEEcCCCceEEEEecCcccccccCCCCcEEEEECC-CCCEeEEEEECCCCEEEEEECCCCe-EEEEEcCCEEEEEeCC-C
Confidence 4455555555555433 2 4999996 7778877654448999999998655 5555689999999986 3
Q ss_pred ceEEEee-------cCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEE
Q psy9598 551 APISVLV-------GHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILC 623 (1915)
Q Consensus 551 ~~~~~l~-------~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~ 623 (1915)
.....+. -....|..+.+.. +| .++. ..++.|.+..-.............+.. .............
T Consensus 111 ~~~fsl~~~i~~~~v~e~~i~~~~~~~----~G-ivvL-t~~~~~~~v~n~~~~~~~~~~~~~p~~-~~~~~~~~~~~~i 183 (410)
T PF04841_consen 111 EFQFSLGEEIEEEKVLECRIFAIWFYK----NG-IVVL-TGNNRFYVVNNIDEPVKLRRLPEIPGL-WTKFHWWPSWTVI 183 (410)
T ss_pred ceeechhhhccccCcccccccccccCC----CC-EEEE-CCCCeEEEEeCccccchhhccccCCCc-ccccccccccccc
Confidence 3311111 1111122222221 22 2222 333444333211111000000010110 0001011111011
Q ss_pred EEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCC
Q psy9598 624 SSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCS 695 (1915)
Q Consensus 624 l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~ 695 (1915)
..++.+....+....++.|.+.+-... .. + ...+++..|++||+|++++.-..+|.+.|....-.
T Consensus 184 ~~l~~~~~~~i~~~~g~~i~~i~~~~~---~~---i-~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~ 248 (410)
T PF04841_consen 184 PLLSSDRVVEILLANGETIYIIDENSF---KQ---I-DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFS 248 (410)
T ss_pred eEeecCcceEEEEecCCEEEEEEcccc---cc---c-cCCCCeEEEEECCCCCEEEEEECCCCEEEEECccc
Confidence 334555555555555666664443111 00 1 13468999999999999999999999888865433
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG1897|consensus | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.39 Score=63.41 Aligned_cols=322 Identities=16% Similarity=0.137 Sum_probs=160.6
Q ss_pred EcCCCCEEEEEECCCcEEEEECC-CCcEEE------EEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceE---
Q psy9598 484 FDKLGEVIVTGADDLLIKLWRAR-DGKLLA------TLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPI--- 553 (1915)
Q Consensus 484 fspdg~~LaTGs~Dg~I~IWd~~-tg~~~~------~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~--- 553 (1915)
.+.+|.+.+.|..+|.+...-+. +++... .+-|..+-..||..-++| +|++||.-|.=.+-.+.+-.-.
T Consensus 265 v~~~~~~yLl~d~~G~Lf~l~l~~~~e~~s~~~lkve~lge~siassi~~L~ng-~lFvGS~~gdSqLi~L~~e~d~gsy 343 (1096)
T KOG1897|consen 265 VDLQGSRYLLGDEDGMLFKLLLSHTGETVSGLDLKVEYLGETSIASSINYLDNG-VLFVGSRFGDSQLIKLNTEPDVGSY 343 (1096)
T ss_pred ccCCccEEEEecCCCcEEEEEeecccccccceEEEEEecCCcchhhhhhcccCc-eEEEeccCCceeeEEccccCCCCch
Confidence 46678888888888887665444 443222 223455556677766665 7888887666566666542221
Q ss_pred ----EEeecCCCCeEEEEeccCccCCCcEEEEEe---CCCeEEEEecccCccccceeccCccccccccCCCCCceEEEE-
Q psy9598 554 ----SVLVGHQGIITGVNFCPLEVNGFNYLASTS---TDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSS- 625 (1915)
Q Consensus 554 ----~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs---~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~- 625 (1915)
.++ ..-++|..++...........+++|+ .||++++..-.-+ +...... . .++-..++.+.
T Consensus 344 ~~ilet~-~NLgPI~Dm~Vvd~d~q~q~qivtCsGa~kdgSLRiiRngi~--I~e~A~i-------~-l~Gikg~w~lk~ 412 (1096)
T KOG1897|consen 344 VVILETF-VNLGPIVDMCVVDLDRQGQGQIVTCSGAFKDGSLRIIRNGIG--IDELASI-------D-LPGIKGMWSLKS 412 (1096)
T ss_pred hhhhhhc-ccccceeeEEEEeccccCCceEEEEeCCCCCCcEEEEecccc--cceeeEe-------e-cCCccceeEeec
Confidence 122 23468888877654322345566655 5899999753322 1111100 0 11223455555
Q ss_pred -ECCC-CcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcC-CCCEEEEEeCCCcEEEEEccCCceEEeee
Q psy9598 626 -FSPG-GLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSH-SHLRFVSGSRDGTALIWYYKCSQWRFIRL 702 (1915)
Q Consensus 626 -fspd-g~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fsp-dg~~L~sgs~DG~I~IWDl~~~~~~~~~~ 702 (1915)
+++. ..+|+.+-.+ .-++..+... .......+.......+..|. .|+.|+=.. ...|++++-. +.
T Consensus 413 ~v~~~~d~ylvlsf~~-eTrvl~i~~e---~ee~~~~gf~~~~~Tif~S~i~g~~lvQvT-s~~iRl~ss~-~~------ 480 (1096)
T KOG1897|consen 413 MVDENYDNYLVLSFIS-ETRVLNISEE---VEETEDPGFSTDEQTIFCSTINGNQLVQVT-SNSIRLVSSA-GL------ 480 (1096)
T ss_pred cccccCCcEEEEEecc-ceEEEEEccc---eEEeccccccccCceEEEEccCCceEEEEe-cccEEEEcch-hh------
Confidence 3332 1245544333 3445555211 11111122222222222111 111211111 1123333321 00
Q ss_pred cccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEee-CCCCCeEEEEEccC--CCC-
Q psy9598 703 DMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLK-GHTNEVFVLESHPF--DSR- 778 (1915)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~-gH~~~V~sl~~sp~--dg~- 778 (1915)
...-.....++....+.+...++.+++ ++.+...++..+.+...-+ .-...|.|+.++|. +.+
T Consensus 481 ------------~~~W~~p~~~ti~~~~~n~sqVvvA~~-~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~ 547 (1096)
T KOG1897|consen 481 ------------RSEWRPPGKITIGVVSANASQVVVAGG-GLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNK 547 (1096)
T ss_pred ------------hhcccCCCceEEEEEeecceEEEEecC-ccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCc
Confidence 000012233444455555556777766 6777777776555222211 22457999999974 233
Q ss_pred --EEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q psy9598 779 --VLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLG 844 (1915)
Q Consensus 779 --~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl~ 844 (1915)
+++.|.++..+.+--....-. +......-...-...|.-.+|--|+.+|.++..||.+.-|.+.
T Consensus 548 s~~~aVG~Ws~~~~~l~~~pd~~--~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d 613 (1096)
T KOG1897|consen 548 SRLLAVGLWSDISMILTFLPDLI--LITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLD 613 (1096)
T ss_pred ceEEEEEeecceEEEEEECCCcc--eeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEE
Confidence 888898877666544322222 1111100001112345666777789999999999999766554
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.24 Score=62.49 Aligned_cols=266 Identities=9% Similarity=0.049 Sum_probs=160.9
Q ss_pred EEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEe-CCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcE
Q psy9598 500 IKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGT-VDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNY 578 (1915)
Q Consensus 500 I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs-~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~ 578 (1915)
+.+++..+......+.-+. ....+...+++..+.... ....+.+.+............-...-.++++++.+ ...
T Consensus 13 ~~v~~~~~~~~~~~~~~~~-~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~---~~v 88 (381)
T COG3391 13 VSVINTGTNKVTAAISLGR-GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAG---NKV 88 (381)
T ss_pred eEEEeecccEEEEEeecCC-CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCC---CeE
Confidence 6666666665555554333 456677788875443332 22245555544222111111111333566777643 346
Q ss_pred EEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeC---CCeEEEEEecCCCCCce
Q psy9598 579 LASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSG---DHHVRVYKMDGVDSPLG 655 (1915)
Q Consensus 579 L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~---Dg~I~IwDl~~~~~~~~ 655 (1915)
+++...++.|.+.|..+.......... .....+++++++..+.++.. ++.+.+.|.. ....
T Consensus 89 yv~~~~~~~v~vid~~~~~~~~~~~vG-------------~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~---t~~~ 152 (381)
T COG3391 89 YVTTGDSNTVSVIDTATNTVLGSIPVG-------------LGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAA---TNKV 152 (381)
T ss_pred EEecCCCCeEEEEcCcccceeeEeeec-------------cCCceEEECCCCCEEEEEecccCCceEEEEeCC---CCeE
Confidence 666667789999996665443333322 24567899999987777665 5777777763 2223
Q ss_pred eEEeccCCCCeeEEEEcCCCCEEEEEe-CCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCC
Q psy9598 656 ILEVEEHSDKVDSIQWSHSHLRFVSGS-RDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDR 734 (1915)
Q Consensus 656 i~~l~~h~~~V~sl~fspdg~~L~sgs-~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~ 734 (1915)
+........+ ..++++|+|..++.+. .++.|.+.|........ .. ..........-..+.++++|.
T Consensus 153 ~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~-----------~~~~~~~~~~P~~i~v~~~g~ 219 (381)
T COG3391 153 TATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GS-----------VGSLVGVGTGPAGIAVDPDGN 219 (381)
T ss_pred EEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-cc-----------cccccccCCCCceEEECCCCC
Confidence 3333222234 8899999999666554 78999999976654221 00 000111223345688999999
Q ss_pred EEEEEEecC--CeEEEEECCCCceEEE-eeCCCCCeEEEEEccCCCCEEEEEe-cCceEEEEECCCCcc
Q psy9598 735 WVITAINFN--FQIKIWDAFNGDLVQV-LKGHTNEVFVLESHPFDSRVLLSAG-HDGLIIIWDILSSKQ 799 (1915)
Q Consensus 735 ~L~t~s~~D--g~I~vwD~~tg~~i~~-l~gH~~~V~sl~~sp~dg~~LaSgs-~DG~I~IWdl~s~~~ 799 (1915)
++++....+ +.+.+.|..++..... +..-......+.++| ++..+.+.. ..+.|.+-|..+...
T Consensus 220 ~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p-~g~~~yv~~~~~~~V~vid~~~~~v 287 (381)
T COG3391 220 RVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDP-AGKAAYVANSQGGTVSVIDGATDRV 287 (381)
T ss_pred EEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECC-CCCEEEEEecCCCeEEEEeCCCCce
Confidence 888877634 5899999988877665 221111456788899 888777774 447888888877665
|
|
| >KOG2276|consensus | Back alignment and domain information |
|---|
Probab=97.22 E-value=9e-05 Score=87.33 Aligned_cols=76 Identities=20% Similarity=0.204 Sum_probs=63.7
Q ss_pred CccceeecccCC-CCCcCCCCcccC-CCCCCCCCCCcccccCCCCCCC-----------CCccccc-ccCCCCCceeeec
Q psy9598 871 LFEPTYDEVTNL-PPHLMPPPFLVD-LNGTPYPPEVQRLVPGRENADD-----------TELLPDI-TTNDDGHVEIVEG 936 (1915)
Q Consensus 871 ~~~~v~D~~t~~-~p~~~~~pfl~~-~~G~~ypp~~Q~lv~GR~~s~~-----------~~L~~~~-~~~~d~~~~~ieg 936 (1915)
.+|+|+|++++. .-.|.++||.++ .+|.+| |||.+|+ ..|.... +|-++ ++|++||
T Consensus 95 lvYgHlDVqpA~~~DgW~TdPF~Lt~~~GkL~---------GRG~TDdkGPv~~wi~av~a~~~~g~~lpvn-v~f~~Eg 164 (473)
T KOG2276|consen 95 LVYGHLDVQPANLEDGWNTDPFTLTEDDGKLF---------GRGATDDKGPVLSWIHAVKALQQLGIDLPVN-VVFVFEG 164 (473)
T ss_pred EEEeeeeeeecCCCCCCcCCCeEEEEECCEEe---------ccCcCCCCccchHHHHHHHHHHHhCccccce-EEEEEEe
Confidence 569999999887 556999999999 889999 9999998 2233333 67777 9999999
Q ss_pred ccccCCCchhhccccccCCC
Q psy9598 937 SERNGERPVEVEGQRHYNDH 956 (1915)
Q Consensus 937 ~ee~gs~~~~~~~~~~~~~~ 956 (1915)
-||+||.++.+++.+.++-+
T Consensus 165 mEEsgS~~L~~l~~~~kD~~ 184 (473)
T KOG2276|consen 165 MEESGSEGLDELIEKEKDKF 184 (473)
T ss_pred chhccCccHHHHHHHHhhhh
Confidence 99999999999999988764
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.096 Score=62.90 Aligned_cols=238 Identities=16% Similarity=0.180 Sum_probs=127.9
Q ss_pred CCCCEEEEEECCCcEEEEECC-CCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEe--------
Q psy9598 486 KLGEVIVTGADDLLIKLWRAR-DGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVL-------- 556 (1915)
Q Consensus 486 pdg~~LaTGs~Dg~I~IWd~~-tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l-------- 556 (1915)
..++.|+.|+.+| |.++++. ......... ...|..|...++-+.|++-+ |+.|.++++.........
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~--~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILK--LSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEee--cceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence 4588999999998 8999983 333333332 33499999999877777765 599999999764443311
Q ss_pred ------ecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCC
Q psy9598 557 ------VGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGG 630 (1915)
Q Consensus 557 ------~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg 630 (1915)
......+...+... ...+...|+ +.....|.+|.+........... .+. .-...+.+++|. +
T Consensus 81 ~~~~~~~~~~~~v~~f~~~~-~~~~~~~L~-va~kk~i~i~~~~~~~~~f~~~~------ke~--~lp~~~~~i~~~--~ 148 (275)
T PF00780_consen 81 RSLPTKLPETKGVSFFAVNG-GHEGSRRLC-VAVKKKILIYEWNDPRNSFSKLL------KEI--SLPDPPSSIAFL--G 148 (275)
T ss_pred ccccccccccCCeeEEeecc-ccccceEEE-EEECCEEEEEEEECCccccccee------EEE--EcCCCcEEEEEe--C
Confidence 11223344433111 112334444 44445899988876421110000 000 112667888888 5
Q ss_pred cEEEEEeCCCeEEEEEecCCCCCceeEEecc----------CCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEe
Q psy9598 631 LFLATGSGDHHVRVYKMDGVDSPLGILEVEE----------HSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFI 700 (1915)
Q Consensus 631 ~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~----------h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~ 700 (1915)
+.|+.|..+ ...+.|+.+. ....+..... ...++..+.+. ++.+|++. |....+.|.......
T Consensus 149 ~~i~v~~~~-~f~~idl~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~~--~~~g~fv~~~G~~~r-- 221 (275)
T PF00780_consen 149 NKICVGTSK-GFYLIDLNTG-SPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLCY--DNIGVFVNKNGEPSR-- 221 (275)
T ss_pred CEEEEEeCC-ceEEEecCCC-CceEEeCccCCcchhhhcccCCCceEEEEeC-CceEEEEe--cceEEEEcCCCCcCc--
Confidence 567777655 4678888532 2222222111 11233333333 34555543 222222233221100
Q ss_pred eecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCC
Q psy9598 701 RLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHT 764 (1915)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~ 764 (1915)
.....-......+++ ...||++.+ ++.|.||++.++++++++.++.
T Consensus 222 --------------~~~i~W~~~p~~~~~--~~pyli~~~--~~~iEV~~~~~~~lvQ~i~~~~ 267 (275)
T PF00780_consen 222 --------------KSTIQWSSAPQSVAY--SSPYLIAFS--SNSIEVRSLETGELVQTIPLPN 267 (275)
T ss_pred --------------ccEEEcCCchhEEEE--ECCEEEEEC--CCEEEEEECcCCcEEEEEECCC
Confidence 000111223344554 345777765 4669999999999999987554
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.049 Score=68.02 Aligned_cols=89 Identities=13% Similarity=0.188 Sum_probs=61.8
Q ss_pred EEEEcCCCCEEEEEECCCcEEE---EECC-----CCcEEEEEeC---CC--CCEEEEEEe-----------CCCCEEEEE
Q psy9598 481 CVLFDKLGEVIVTGADDLLIKL---WRAR-----DGKLLATLRG---CS--GEISDIAID-----------NRNILLAAG 536 (1915)
Q Consensus 481 ~vafspdg~~LaTGs~Dg~I~I---Wd~~-----tg~~~~~l~g---H~--~~I~~Lafs-----------pdg~~LaSg 536 (1915)
+++.+|+|.+||.|..+..|.+ |+.. .+.......+ +. ..|+++.|- +|...++.|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 5678899999999988776655 6431 1222222221 21 467777663 346789999
Q ss_pred eCCCcEEEEECCCCceEEEeecCCCCeEEEEecc
Q psy9598 537 TVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCP 570 (1915)
Q Consensus 537 s~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp 570 (1915)
..+|.|++|.. +|..+..-.-|..+|..|.+..
T Consensus 86 ~ssG~vrfyte-~G~LL~~Q~~h~~pV~~ik~~~ 118 (415)
T PF14655_consen 86 TSSGYVRFYTE-NGVLLLSQLLHEEPVLKIKCRS 118 (415)
T ss_pred ecccEEEEEec-cchHHHHHhcCccceEEEEecc
Confidence 99999999996 5777666666899999998865
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.13 Score=65.41 Aligned_cols=235 Identities=14% Similarity=0.150 Sum_probs=112.8
Q ss_pred EeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEec
Q psy9598 514 LRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKY 593 (1915)
Q Consensus 514 l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl 593 (1915)
+.........|.++|+|++++.++ ||...|+.......... +.-...+|.+. +.+++-...++|.++.-
T Consensus 28 lg~~~~~p~~ls~npngr~v~V~g-~geY~iyt~~~~r~k~~-----G~g~~~vw~~~-----n~yAv~~~~~~I~I~kn 96 (443)
T PF04053_consen 28 LGSCEIYPQSLSHNPNGRFVLVCG-DGEYEIYTALAWRNKAF-----GSGLSFVWSSR-----NRYAVLESSSTIKIYKN 96 (443)
T ss_dssp EEE-SS--SEEEE-TTSSEEEEEE-TTEEEEEETTTTEEEEE-----EE-SEEEE-TS-----SEEEEE-TTS-EEEEET
T ss_pred CCCCCcCCeeEEECCCCCEEEEEc-CCEEEEEEccCCccccc-----CceeEEEEecC-----ccEEEEECCCeEEEEEc
Confidence 333445578999999999999855 78888888554444332 23356788873 35666666888999632
Q ss_pred ccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcC
Q psy9598 594 KLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSH 673 (1915)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fsp 673 (1915)
-.......+... ..+..+-. |.+|+..+.+ .|.+||+. +...+..+... .|..|.|++
T Consensus 97 ~~~~~~k~i~~~-------------~~~~~If~---G~LL~~~~~~-~i~~yDw~---~~~~i~~i~v~--~vk~V~Ws~ 154 (443)
T PF04053_consen 97 FKNEVVKSIKLP-------------FSVEKIFG---GNLLGVKSSD-FICFYDWE---TGKLIRRIDVS--AVKYVIWSD 154 (443)
T ss_dssp TEE-TT-----S-------------S-EEEEE----SSSEEEEETT-EEEEE-TT---T--EEEEESS---E-EEEEE-T
T ss_pred CccccceEEcCC-------------cccceEEc---CcEEEEECCC-CEEEEEhh---HcceeeEEecC--CCcEEEEEC
Confidence 222111111111 11222222 7777776654 89999993 34555555432 489999999
Q ss_pred CCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCc-cccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECC
Q psy9598 674 SHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTK-ETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAF 752 (1915)
Q Consensus 674 dg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~ 752 (1915)
+|.+++..+.+ ++.|++........ ....+.. ...........|.+.+|..+ .+|+++ . +.|+.+ .
T Consensus 155 ~g~~val~t~~-~i~il~~~~~~~~~------~~~~g~e~~f~~~~E~~~~IkSg~W~~d-~fiYtT-~--~~lkYl--~ 221 (443)
T PF04053_consen 155 DGELVALVTKD-SIYILKYNLEAVAA------IPEEGVEDAFELIHEISERIKSGCWVED-CFIYTT-S--NHLKYL--V 221 (443)
T ss_dssp TSSEEEEE-S--SEEEEEE-HHHHHH------BTTTB-GGGEEEEEEE-S--SEEEEETT-EEEEE--T--TEEEEE--E
T ss_pred CCCEEEEEeCC-eEEEEEecchhccc------ccccCchhceEEEEEecceeEEEEEEcC-EEEEEc-C--CeEEEE--E
Confidence 99999888765 66676654320000 0000000 00001111456778888766 333333 2 366653 2
Q ss_pred CCceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCC
Q psy9598 753 NGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILS 796 (1915)
Q Consensus 753 tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s 796 (1915)
.|. ..++..-..+++-+.+.+ ..+.|.....|+.|..+.+..
T Consensus 222 ~Ge-~~~i~~ld~~~yllgy~~-~~~~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 222 NGE-TGIIAHLDKPLYLLGYLP-KENRLYLIDRDGNVISYELDL 263 (443)
T ss_dssp TTE-EEEEEE-SS--EEEEEET-TTTEEEEE-TT--EEEEE--H
T ss_pred cCC-cceEEEcCCceEEEEEEc-cCCEEEEEECCCCEEEEEECH
Confidence 332 222222234566666666 556777777788887777654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.034 Score=68.48 Aligned_cols=176 Identities=12% Similarity=0.185 Sum_probs=109.8
Q ss_pred CcEEEEECCCCcEEEEEeCCC-CCEEEEEE---eCC----CCEEEEEeC----------CCcEEEEECCCC----ceEEE
Q psy9598 498 LLIKLWRARDGKLLATLRGCS-GEISDIAI---DNR----NILLAAGTV----------DKTIRIWNLQTL----APISV 555 (1915)
Q Consensus 498 g~I~IWd~~tg~~~~~l~gH~-~~I~~Laf---spd----g~~LaSgs~----------DgtIrVWDl~tg----~~~~~ 555 (1915)
+.|+|.|..+...+.++.-.. ..|++++. ..+ ..+|+.|+. .|.|.++++... ..+..
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 368899998888877664332 23555443 322 468887753 288999999874 12222
Q ss_pred e--ecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCc-cccceeccCccccccccCCCCCceEEEEECCCCcE
Q psy9598 556 L--VGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDI-DISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLF 632 (1915)
Q Consensus 556 l--~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~-~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~ 632 (1915)
+ ....++|++|+-.. ..|+++. ++.|.+|++.... ........ ....+.++... +++
T Consensus 82 i~~~~~~g~V~ai~~~~------~~lv~~~-g~~l~v~~l~~~~~l~~~~~~~-----------~~~~i~sl~~~--~~~ 141 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSFN------GRLVVAV-GNKLYVYDLDNSKTLLKKAFYD-----------SPFYITSLSVF--KNY 141 (321)
T ss_dssp EEEEEESS-EEEEEEET------TEEEEEE-TTEEEEEEEETTSSEEEEEEE------------BSSSEEEEEEE--TTE
T ss_pred EEEEeecCcceEhhhhC------CEEEEee-cCEEEEEEccCcccchhhheec-----------ceEEEEEEecc--ccE
Confidence 2 23568899988763 3444444 4789999998876 22221111 11345555554 559
Q ss_pred EEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEcc
Q psy9598 633 LATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYK 693 (1915)
Q Consensus 633 Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~ 693 (1915)
|++|.....|.++.++..........-......++++.|-.++..++++..+|.+.++...
T Consensus 142 I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 142 ILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp EEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred EEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 9999999999988775322212222223345668888888666799999999999999765
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.25 Score=59.27 Aligned_cols=251 Identities=12% Similarity=0.087 Sum_probs=131.6
Q ss_pred CCCCEEEEEeCCCcEEEEEC-CCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceec-c
Q psy9598 528 NRNILLAAGTVDKTIRIWNL-QTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVF-H 605 (1915)
Q Consensus 528 pdg~~LaSgs~DgtIrVWDl-~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~-~ 605 (1915)
..++.|+.|+.+| |.++++ ......... +...|..+...+.. +.|++-+ |+.|.++++..-........ .
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~----~~llvLs-d~~l~~~~L~~l~~~~~~~~~~ 76 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPEL----NLLLVLS-DGQLYVYDLDSLEPVSTSAPLA 76 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEeccc----CEEEEEc-CCccEEEEchhhcccccccccc
Confidence 4577899999998 899998 333333333 23349999998843 5555554 49999999876543321110 0
Q ss_pred Cccc-cccccCCCCCceEEEE--ECCCCcEEEEEeCCCeEEEEEecCCCC-C-ceeEEeccCCCCeeEEEEcCCCCEEEE
Q psy9598 606 EPVM-FNERIRPGNAHILCSS--FSPGGLFLATGSGDHHVRVYKMDGVDS-P-LGILEVEEHSDKVDSIQWSHSHLRFVS 680 (1915)
Q Consensus 606 ~~~~-~~~~~~~~~~~V~~l~--fspdg~~Lasgs~Dg~I~IwDl~~~~~-~-~~i~~l~~h~~~V~sl~fspdg~~L~s 680 (1915)
.+.. ...........+..++ -...+...++......|.||.+..... . .....+ .....+.+++|. ++.|+.
T Consensus 77 ~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~-~lp~~~~~i~~~--~~~i~v 153 (275)
T PF00780_consen 77 FPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEI-SLPDPPSSIAFL--GNKICV 153 (275)
T ss_pred ccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEE-EcCCCcEEEEEe--CCEEEE
Confidence 0000 0000011122333333 122333334444455999999865322 2 233333 344788999998 557787
Q ss_pred EeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEE--
Q psy9598 681 GSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQ-- 758 (1915)
Q Consensus 681 gs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~-- 758 (1915)
|..++ ..+.|+.++....+....... ............+..+.++ ++.+|++. +..-.+.|. .|....
T Consensus 154 ~~~~~-f~~idl~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~-~~e~Ll~~---~~~g~fv~~-~G~~~r~~ 223 (275)
T PF00780_consen 154 GTSKG-FYLIDLNTGSPSELLDPSDSS----SSFKSRNSSSKPLGIFQLS-DNEFLLCY---DNIGVFVNK-NGEPSRKS 223 (275)
T ss_pred EeCCc-eEEEecCCCCceEEeCccCCc----chhhhcccCCCceEEEEeC-CceEEEEe---cceEEEEcC-CCCcCccc
Confidence 77665 667788876644332110000 0000111122334444443 45666653 333333443 454433
Q ss_pred EeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeee
Q psy9598 759 VLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFH 806 (1915)
Q Consensus 759 ~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~ 806 (1915)
.+.-. ....++++.. .+|+..+. +.|-||++.+++. ++.+.
T Consensus 224 ~i~W~-~~p~~~~~~~---pyli~~~~-~~iEV~~~~~~~l--vQ~i~ 264 (275)
T PF00780_consen 224 TIQWS-SAPQSVAYSS---PYLIAFSS-NSIEVRSLETGEL--VQTIP 264 (275)
T ss_pred EEEcC-CchhEEEEEC---CEEEEECC-CEEEEEECcCCcE--EEEEE
Confidence 33322 2445555543 46666555 5699999999987 55543
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.068 Score=67.04 Aligned_cols=232 Identities=11% Similarity=0.096 Sum_probs=125.6
Q ss_pred ceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCC----------------------c------------------eeEEe
Q psy9598 620 HILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSP----------------------L------------------GILEV 659 (1915)
Q Consensus 620 ~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~----------------------~------------------~i~~l 659 (1915)
.|..++|++...-|++|...|.|.||.+...... . ....+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 5889999999889999999999999987422110 0 11122
Q ss_pred ccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEEC-----CCC-
Q psy9598 660 EEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWD-----ASD- 733 (1915)
Q Consensus 660 ~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~s-----pdg- 733 (1915)
....++|++++.|.-| +++.|..+|.+.|.|++....++... ... ..........|+++.|+ .|+
T Consensus 83 ~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~-i~~-------~~~~~~~~~~vt~ieF~vm~~~~D~y 153 (395)
T PF08596_consen 83 DAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNEN-IRE-------SFLSKSSSSYVTSIEFSVMTLGGDGY 153 (395)
T ss_dssp ---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEE-GGG---------T-SS----EEEEEEEEEE-TTSSS
T ss_pred eccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeecc-ccc-------cccccccccCeeEEEEEEEecCCCcc
Confidence 3346889999997544 89999999999999998877655421 111 11112234456666665 233
Q ss_pred --CEEEEEEecCCeEEEEECCC---Cc----eEEEeeCCCCCeEEEE-EccCC--------------------CCEEEEE
Q psy9598 734 --RWVITAINFNFQIKIWDAFN---GD----LVQVLKGHTNEVFVLE-SHPFD--------------------SRVLLSA 783 (1915)
Q Consensus 734 --~~L~t~s~~Dg~I~vwD~~t---g~----~i~~l~gH~~~V~sl~-~sp~d--------------------g~~LaSg 783 (1915)
-.+++|.+ .|.+.+|.+.- +. .......|.+.|..|. ++..+ ..++++
T Consensus 154 SSi~L~vGTn-~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVv- 231 (395)
T PF08596_consen 154 SSICLLVGTN-SGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVV- 231 (395)
T ss_dssp EEEEEEEEET-TSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEE-
T ss_pred cceEEEEEeC-CCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEE-
Confidence 45777777 89999997641 21 2222234666666665 32111 123444
Q ss_pred ecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEE-----cCCCCEEEEEeCCCeEEEEeCCCCcccccCCC----
Q psy9598 784 GHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKW-----SPDGTTCALTDSYGHLLVYGLGGFKRPQNIPR---- 854 (1915)
Q Consensus 784 s~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vaf-----Spdg~~Lasg~~dG~I~Iwdl~s~~~~~~l~~---- 854 (1915)
..+..|+|+...+.+. ..... ...-....+.+ ...+..|++-..+|.|++|.+..-+.+..+..
T Consensus 232 vSe~~irv~~~~~~k~--~~K~~-----~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~ 304 (395)
T PF08596_consen 232 VSESDIRVFKPPKSKG--AHKSF-----DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPL 304 (395)
T ss_dssp E-SSEEEEE-TT---E--EEEE------SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS--
T ss_pred EcccceEEEeCCCCcc--cceee-----ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCcc
Confidence 4466899999887665 22211 11112223334 23677899999999999999998766543321
Q ss_pred ------ceeecCCCCeeeecC
Q psy9598 855 ------ELFFHTDYRTLNRPN 869 (1915)
Q Consensus 855 ------~~~F~~d~~~Lv~~~ 869 (1915)
...|..+|..+...+
T Consensus 305 d~~~~~~ssis~~Gdi~~~~g 325 (395)
T PF08596_consen 305 DSRRLSSSSISRNGDIFYWTG 325 (395)
T ss_dssp -HHHHTT-EE-TTS-EEEE-S
T ss_pred ccccccccEECCCCCEEEEeC
Confidence 567788888776443
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.082 Score=60.46 Aligned_cols=250 Identities=14% Similarity=0.109 Sum_probs=143.8
Q ss_pred EEEEeccCccCCCcEEEEEeCCCe-EEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCC---
Q psy9598 564 TGVNFCPLEVNGFNYLASTSTDGC-IGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGD--- 639 (1915)
Q Consensus 564 ~sl~fsp~~~~d~~~L~sgs~Dgt-I~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~D--- 639 (1915)
..|+|+|.. ...++.+-.-|+ ..++|..+...+..+... ....+.+| -.|||+|.+|.+.-.|
T Consensus 71 Hgi~~~p~~---~ravafARrPGtf~~vfD~~~~~~pv~~~s~----~~RHfyGH------Gvfs~dG~~LYATEndfd~ 137 (366)
T COG3490 71 HGIAFHPAL---PRAVAFARRPGTFAMVFDPNGAQEPVTLVSQ----EGRHFYGH------GVFSPDGRLLYATENDFDP 137 (366)
T ss_pred CCeecCCCC---cceEEEEecCCceEEEECCCCCcCcEEEecc----cCceeecc------cccCCCCcEEEeecCCCCC
Confidence 457788854 366677766665 467888877654443322 11223333 3699999999876543
Q ss_pred --CeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEE--------EccCCceEEeeecccccCC
Q psy9598 640 --HHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIW--------YYKCSQWRFIRLDMNTCLP 709 (1915)
Q Consensus 640 --g~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IW--------Dl~~~~~~~~~~~~~~~~~ 709 (1915)
|.|-|||.+ .....+..+..|.-.-..+.|.+||..|+.+. |-|..- ++.+.+.....++..+..-
T Consensus 138 ~rGViGvYd~r--~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan--GGIethpdfgR~~lNldsMePSlvlld~atG~l 213 (366)
T COG3490 138 NRGVIGVYDAR--EGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN--GGIETHPDFGRTELNLDSMEPSLVLLDAATGNL 213 (366)
T ss_pred CCceEEEEecc--cccceecccccCCcCcceeEEecCCcEEEEeC--CceecccccCccccchhhcCccEEEEeccccch
Confidence 789999985 55667778888888889999999999888763 444443 2223322222222111111
Q ss_pred CCccccccccccccEEEEEECCCCCEEEEEEecCCe-----EEEEECCCCceEEEeeC-------CCCCeEEEEEccCCC
Q psy9598 710 HTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQ-----IKIWDAFNGDLVQVLKG-------HTNEVFVLESHPFDS 777 (1915)
Q Consensus 710 ~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~-----I~vwD~~tg~~i~~l~g-------H~~~V~sl~~sp~dg 777 (1915)
..+.......+...|..++..+||+.++.+-. .|. .-|=-...|+.+.-+.. -...|-+|+.+..++
T Consensus 214 iekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy-~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~g 292 (366)
T COG3490 214 IEKHTLPASLRQLSIRHLDIGRDGTVWFGCQY-RGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDG 292 (366)
T ss_pred hhhccCchhhhhcceeeeeeCCCCcEEEEEEe-eCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCC
Confidence 11111122235567888999888876655432 221 11111223344433321 234677888887455
Q ss_pred CEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEEeCCCeEEEEe
Q psy9598 778 RVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYG 842 (1915)
Q Consensus 778 ~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~dG~I~Iwd 842 (1915)
-+.+|.-.-+...|||..+|.......+. -++-.-+...-|++++.+|.|.++.
T Consensus 293 lV~lTSP~GN~~vi~da~tG~vv~~a~l~-----------daaGva~~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 293 LVALTSPRGNRAVIWDAATGAVVSEAALP-----------DAAGVAAAKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred eEEEecCCCCeEEEEEcCCCcEEeccccc-----------ccccceeccCceEEecCCceEEecc
Confidence 55555555667789999999872111111 1112233455577777788888873
|
|
| >KOG2079|consensus | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0077 Score=79.05 Aligned_cols=104 Identities=24% Similarity=0.371 Sum_probs=80.4
Q ss_pred CCEEEEEECCCcEEEEECCCC-cEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEE
Q psy9598 488 GEVIVTGADDLLIKLWRARDG-KLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGV 566 (1915)
Q Consensus 488 g~~LaTGs~Dg~I~IWd~~tg-~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl 566 (1915)
+.+|+.|+..|.|...|+... .....=....++|++++|+.+|.+++.|-.+|.|.+||+.++..++.+..|..+++++
T Consensus 99 ~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~v 178 (1206)
T KOG2079|consen 99 VVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGV 178 (1206)
T ss_pred eeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceE
Confidence 668999999999999997542 1112212346789999999999999999999999999999999999998888777777
Q ss_pred EeccCccCCCcEEEEEeCCCeEEEEecc
Q psy9598 567 NFCPLEVNGFNYLASTSTDGCIGFWKYK 594 (1915)
Q Consensus 567 ~fsp~~~~d~~~L~sgs~DgtI~iWDl~ 594 (1915)
-+.--. +++..++++...|. +|.+.
T Consensus 179 i~v~~t-~~nS~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 179 IFVGRT-SQNSKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred EEEEEe-CCCcEEEEccCCCc--eEEEE
Confidence 665433 24457888887776 67654
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.3 Score=62.55 Aligned_cols=250 Identities=13% Similarity=0.113 Sum_probs=125.7
Q ss_pred EEEEEEeCCCCEEEEE-eCCC----cEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCC---------
Q psy9598 521 ISDIAIDNRNILLAAG-TVDK----TIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDG--------- 586 (1915)
Q Consensus 521 I~~Lafspdg~~LaSg-s~Dg----tIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~Dg--------- 586 (1915)
+..++++|+|++||.+ +..| +|+|+|+.+|+.+....... ...++.|.+++ ..|+....+.
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~-~~~~~~W~~d~----~~~~y~~~~~~~~~~~~~~ 200 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP-KFSSVSWSDDG----KGFFYTRFDEDQRTSDSGY 200 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE-ESEEEEECTTS----SEEEEEECSTTTSS-CCGC
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc-ccceEEEeCCC----CEEEEEEeCcccccccCCC
Confidence 3467889999988865 3333 59999999997765321111 11239999843 4554443222
Q ss_pred --eEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCC----CeEEEEEecCCC-CCceeEEe
Q psy9598 587 --CIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGD----HHVRVYKMDGVD-SPLGILEV 659 (1915)
Q Consensus 587 --tI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~D----g~I~IwDl~~~~-~~~~i~~l 659 (1915)
.|.+|.+.+......+.+.... +......+..++++++|+..... ..|.+.++.... .......+
T Consensus 201 ~~~v~~~~~gt~~~~d~lvfe~~~--------~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l 272 (414)
T PF02897_consen 201 PRQVYRHKLGTPQSEDELVFEEPD--------EPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLL 272 (414)
T ss_dssp CEEEEEEETTS-GGG-EEEEC-TT--------CTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEE
T ss_pred CcEEEEEECCCChHhCeeEEeecC--------CCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEE
Confidence 3677777665433223333111 11126678899999987765443 346666664320 11222333
Q ss_pred ccCCCCeeEEEEcCCCCEEEEEe---CCCcEEEEEccCCc---eEEeeecccccCCCCccccccccccccEEEEEECCCC
Q psy9598 660 EEHSDKVDSIQWSHSHLRFVSGS---RDGTALIWYYKCSQ---WRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASD 733 (1915)
Q Consensus 660 ~~h~~~V~sl~fspdg~~L~sgs---~DG~I~IWDl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg 733 (1915)
..+...+....-+..+.+++... ..+.|...++.... +.. ....+...+.-..+...+
T Consensus 273 ~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~----------------~l~~~~~~~~l~~~~~~~ 336 (414)
T PF02897_consen 273 SPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWT----------------VLIPEDEDVSLEDVSLFK 336 (414)
T ss_dssp EESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEE----------------EEE--SSSEEEEEEEEET
T ss_pred eCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEeccccccccccee----------------EEcCCCCceeEEEEEEEC
Confidence 33333443333233333333332 22445555555443 111 111122222222333345
Q ss_pred CEEEEEEecCC--eEEEEECCCCceEEEee-CCCCCeEEEEEccCCCCEEEEEec---CceEEEEECCCCcc
Q psy9598 734 RWVITAINFNF--QIKIWDAFNGDLVQVLK-GHTNEVFVLESHPFDSRVLLSAGH---DGLIIIWDILSSKQ 799 (1915)
Q Consensus 734 ~~L~t~s~~Dg--~I~vwD~~tg~~i~~l~-gH~~~V~sl~~sp~dg~~LaSgs~---DG~I~IWdl~s~~~ 799 (1915)
.+|+.....++ .|++|++..+.....+. .-.+.|..+...+....++++.+. -++|+.||+.+++.
T Consensus 337 ~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~ 408 (414)
T PF02897_consen 337 DYLVLSYRENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGEL 408 (414)
T ss_dssp TEEEEEEEETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred CEEEEEEEECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence 66666555355 58889998344444443 234446666655533444444443 46888899988876
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >KOG2079|consensus | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0078 Score=79.01 Aligned_cols=101 Identities=17% Similarity=0.315 Sum_probs=69.8
Q ss_pred cEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCcee
Q psy9598 577 NYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGI 656 (1915)
Q Consensus 577 ~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i 656 (1915)
..++.|+..|.|-..|+.+.-+. ++ .-....++|+|++|+.+|.+++.|-.+|.|.+||+... ..+
T Consensus 100 ~~ivi~Ts~ghvl~~d~~~nL~~----~~-------~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~---k~l 165 (1206)
T KOG2079|consen 100 VPIVIGTSHGHVLLSDMTGNLGP----LH-------QNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRA---KIL 165 (1206)
T ss_pred eeEEEEcCchhhhhhhhhcccch----hh-------cCCccCCcceeeEecCCCceeccccCCCcEEEEEccCC---cce
Confidence 57888898999988888765221 11 00123488999999999999999999999999999432 333
Q ss_pred EEeccCCCCeeEE---EEcCCCCEEEEEeCCCcEEEEEcc
Q psy9598 657 LEVEEHSDKVDSI---QWSHSHLRFVSGSRDGTALIWYYK 693 (1915)
Q Consensus 657 ~~l~~h~~~V~sl---~fspdg~~L~sgs~DG~I~IWDl~ 693 (1915)
..+..|..+++++ .+..++..++++...|. +|.+.
T Consensus 166 ~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 166 KVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred eeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEEE
Confidence 4444454444443 34456667888888776 67654
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.11 Score=60.71 Aligned_cols=211 Identities=11% Similarity=0.151 Sum_probs=117.0
Q ss_pred EeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEE
Q psy9598 555 VLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLA 634 (1915)
Q Consensus 555 ~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~La 634 (1915)
.+.+-...+.+|+|.|+. +.++++....+.|..++.. +..+....+. +.+..-.+++..++.+++
T Consensus 16 ~l~g~~~e~SGLTy~pd~---~tLfaV~d~~~~i~els~~-G~vlr~i~l~-----------g~~D~EgI~y~g~~~~vl 80 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDT---GTLFAVQDEPGEIYELSLD-GKVLRRIPLD-----------GFGDYEGITYLGNGRYVL 80 (248)
T ss_dssp E-TT--S-EEEEEEETTT---TEEEEEETTTTEEEEEETT---EEEEEE-S-----------S-SSEEEEEE-STTEEEE
T ss_pred ECCCccCCccccEEcCCC---CeEEEEECCCCEEEEEcCC-CCEEEEEeCC-----------CCCCceeEEEECCCEEEE
Confidence 445556679999999943 4677777788888888864 4444444433 235678899988888888
Q ss_pred EEeCCCeEEEEEecCCCCCceeE-----Ee---ccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccC---CceEEeeec
Q psy9598 635 TGSGDHHVRVYKMDGVDSPLGIL-----EV---EEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKC---SQWRFIRLD 703 (1915)
Q Consensus 635 sgs~Dg~I~IwDl~~~~~~~~i~-----~l---~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~---~~~~~~~~~ 703 (1915)
+.-.++.+.++++.......... .+ ..++..+-.|+|.+.+..|+++-...-..||.+.. .........
T Consensus 81 ~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~ 160 (248)
T PF06977_consen 81 SEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDD 160 (248)
T ss_dssp EETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-
T ss_pred EEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccc
Confidence 77779999999984332221111 11 13456689999999988888888777777877664 111110000
Q ss_pred ccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCC---------CCeEEEEEcc
Q psy9598 704 MNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHT---------NEVFVLESHP 774 (1915)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~---------~~V~sl~~sp 774 (1915)
............+.+++++|....|++-+..+..|.++| .+|+.+..+.-.. ...-.|+|.+
T Consensus 161 --------~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~ 231 (248)
T PF06977_consen 161 --------QDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDP 231 (248)
T ss_dssp --------HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-T
T ss_pred --------cccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECC
Confidence 000001223345788999998766666666688999999 6788777665222 2357788888
Q ss_pred CCCCEEEEEecCceEEE
Q psy9598 775 FDSRVLLSAGHDGLIII 791 (1915)
Q Consensus 775 ~dg~~LaSgs~DG~I~I 791 (1915)
+|++.++. .-+..++
T Consensus 232 -~G~LYIvs-EpNlfy~ 246 (248)
T PF06977_consen 232 -DGNLYIVS-EPNLFYR 246 (248)
T ss_dssp -T--EEEEE-TTTEEEE
T ss_pred -CCCEEEEc-CCceEEE
Confidence 77655543 4444444
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.077 Score=62.07 Aligned_cols=212 Identities=10% Similarity=0.051 Sum_probs=113.3
Q ss_pred eEEecCCCCcEEEEEEcCCCC-EEEEEECCCcEEEEECCCCcEEEEEeCC-CCCEEEEEEeCCCCEEEEEeCCCcEEEEE
Q psy9598 469 HYVNLGHLSAVFCVLFDKLGE-VIVTGADDLLIKLWRARDGKLLATLRGC-SGEISDIAIDNRNILLAAGTVDKTIRIWN 546 (1915)
Q Consensus 469 ~~~l~gH~~~V~~vafspdg~-~LaTGs~Dg~I~IWd~~tg~~~~~l~gH-~~~I~~Lafspdg~~LaSgs~DgtIrVWD 546 (1915)
.+.|.|-...|..|+|+|+.. ++++....+.|...+. +|+.+..+... .+..-.|++..++.++++.-.++.+.+.+
T Consensus 14 ~~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~ 92 (248)
T PF06977_consen 14 AKPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFT 92 (248)
T ss_dssp EEE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEE
T ss_pred eeECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEE
Confidence 456777777899999999765 4555555678877886 68888877533 35678899988887777766689999998
Q ss_pred CCCCc---eE---EEee-----cCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccC
Q psy9598 547 LQTLA---PI---SVLV-----GHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIR 615 (1915)
Q Consensus 547 l~tg~---~~---~~l~-----~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~ 615 (1915)
+.... .. ..+. .+...+-.|+|.+.. +.|+.+....-..+|.+................... ..
T Consensus 93 ~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~----~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~-~~ 167 (248)
T PF06977_consen 93 IDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKT----NRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDD-DK 167 (248)
T ss_dssp E----TT--EEEEEEEE---S---SS--EEEEEETTT----TEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH--HT
T ss_pred EeccccccchhhceEEecccccCCCcceEEEEEcCCC----CEEEEEeCCCChhhEEEccccCccceeecccccccc-cc
Confidence 83311 11 1121 244568999999954 566667777777777766411000000000000000 11
Q ss_pred CCCCceEEEEECCC-CcEEEEEeCCCeEEEEEecCCCCCceeEEeccC-------CCCeeEEEEcCCCCEEEEEeCCCcE
Q psy9598 616 PGNAHILCSSFSPG-GLFLATGSGDHHVRVYKMDGVDSPLGILEVEEH-------SDKVDSIQWSHSHLRFVSGSRDGTA 687 (1915)
Q Consensus 616 ~~~~~V~~l~fspd-g~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h-------~~~V~sl~fspdg~~L~sgs~DG~I 687 (1915)
.....+.+++++|. |.+++....+..|.++|.. ........+... -..--.|+|.++|++++++ .-+..
T Consensus 168 ~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~--G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs-EpNlf 244 (248)
T PF06977_consen 168 LFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQ--GRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS-EPNLF 244 (248)
T ss_dssp --SS---EEEEETTTTEEEEEETTTTEEEEE-TT----EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE-TTTEE
T ss_pred ceeccccceEEcCCCCeEEEEECCCCeEEEECCC--CCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc-CCceE
Confidence 22345788999985 5667777778888888853 223333344331 1346789999999755554 44444
Q ss_pred EE
Q psy9598 688 LI 689 (1915)
Q Consensus 688 ~I 689 (1915)
.+
T Consensus 245 y~ 246 (248)
T PF06977_consen 245 YR 246 (248)
T ss_dssp EE
T ss_pred EE
Confidence 33
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.071 Score=67.76 Aligned_cols=224 Identities=13% Similarity=0.076 Sum_probs=112.7
Q ss_pred cCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEe
Q psy9598 558 GHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGS 637 (1915)
Q Consensus 558 ~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs 637 (1915)
........+.++|.+ +.++. +.||...++...... ... .+....++|.+.+. +|+-.
T Consensus 30 ~~~~~p~~ls~npng----r~v~V-~g~geY~iyt~~~~r---~k~--------------~G~g~~~vw~~~n~-yAv~~ 86 (443)
T PF04053_consen 30 SCEIYPQSLSHNPNG----RFVLV-CGDGEYEIYTALAWR---NKA--------------FGSGLSFVWSSRNR-YAVLE 86 (443)
T ss_dssp E-SS--SEEEE-TTS----SEEEE-EETTEEEEEETTTTE---EEE--------------EEE-SEEEE-TSSE-EEEE-
T ss_pred CCCcCCeeEEECCCC----CEEEE-EcCCEEEEEEccCCc---ccc--------------cCceeEEEEecCcc-EEEEE
Confidence 344457899999943 66666 667777777622211 110 13445688988655 66666
Q ss_pred CCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCcccccc
Q psy9598 638 GDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDE 717 (1915)
Q Consensus 638 ~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~ 717 (1915)
..+.|.|+.--.......+ .+ ...+..|- . |.+|+..+.+ .|.+||+.+++.+...
T Consensus 87 ~~~~I~I~kn~~~~~~k~i-~~---~~~~~~If-~--G~LL~~~~~~-~i~~yDw~~~~~i~~i---------------- 142 (443)
T PF04053_consen 87 SSSTIKIYKNFKNEVVKSI-KL---PFSVEKIF-G--GNLLGVKSSD-FICFYDWETGKLIRRI---------------- 142 (443)
T ss_dssp TTS-EEEEETTEE-TT---------SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEE----------------
T ss_pred CCCeEEEEEcCccccceEE-cC---CcccceEE-c--CcEEEEECCC-CEEEEEhhHcceeeEE----------------
Confidence 6888999632111111111 11 11344442 2 7777776555 8999999988755422
Q ss_pred ccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCC-----------ceEEEeeCCCCCeEEEEEccCCCCEEEEEecC
Q psy9598 718 TNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNG-----------DLVQVLKGHTNEVFVLESHPFDSRVLLSAGHD 786 (1915)
Q Consensus 718 ~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg-----------~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~D 786 (1915)
....|..|.|+++|.+++..+. ..+.|++.... ..+..+..-...|.+.+|.. + .++-....
T Consensus 143 --~v~~vk~V~Ws~~g~~val~t~--~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~-d--~fiYtT~~ 215 (443)
T PF04053_consen 143 --DVSAVKYVIWSDDGELVALVTK--DSIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVE-D--CFIYTTSN 215 (443)
T ss_dssp --SS-E-EEEEE-TTSSEEEEE-S---SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEET-T--EEEEE-TT
T ss_pred --ecCCCcEEEEECCCCEEEEEeC--CeEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEc-C--EEEEEcCC
Confidence 1224789999999999999874 56777765322 03333333245677888865 3 44433333
Q ss_pred ceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q psy9598 787 GLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGGF 846 (1915)
Q Consensus 787 G~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl~s~ 846 (1915)
.|+. +..|....+..+ ..+++=+...+..+.|.+.+.++.|..+.+...
T Consensus 216 -~lkY--l~~Ge~~~i~~l--------d~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~~ 264 (443)
T PF04053_consen 216 -HLKY--LVNGETGIIAHL--------DKPLYLLGYLPKENRLYLIDRDGNVISYELDLS 264 (443)
T ss_dssp -EEEE--EETTEEEEEEE---------SS--EEEEEETTTTEEEEE-TT--EEEEE--HH
T ss_pred -eEEE--EEcCCcceEEEc--------CCceEEEEEEccCCEEEEEECCCCEEEEEECHH
Confidence 6665 334443112222 245666777787788888899999888887753
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.077 Score=70.76 Aligned_cols=150 Identities=13% Similarity=0.117 Sum_probs=101.2
Q ss_pred CCCEEEEE-eCCCcEEEEECCCCceEEEeecCCCC-eEEEEeccCcc---CCCcEEEEEeCCCeEEEEecccCcccccee
Q psy9598 529 RNILLAAG-TVDKTIRIWNLQTLAPISVLVGHQGI-ITGVNFCPLEV---NGFNYLASTSTDGCIGFWKYKLDIDISKTV 603 (1915)
Q Consensus 529 dg~~LaSg-s~DgtIrVWDl~tg~~~~~l~~h~~~-V~sl~fsp~~~---~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~ 603 (1915)
+.++|+.. .....|+-.|+.+|+.+..+..|... |..+ .|... -...-.+.|-.+..|..||.+-... .+.
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~--~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~--k~v 567 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDI--APDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGN--KLV 567 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEe--cccccccccCCCceEEEECCCceEEeccCCCCC--cee
Confidence 34454443 35678999999999999999887654 5544 34210 0123456677778899999986431 111
Q ss_pred ccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeC
Q psy9598 604 FHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSR 683 (1915)
Q Consensus 604 ~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~ 683 (1915)
.... ..........|++-+.+| +||+|+.+|.|++||-.+ ...-..+.+...+|.+|..+.||.+|++.+.
T Consensus 568 ~~~~-----k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g---~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~ 638 (794)
T PF08553_consen 568 DSQS-----KQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLG---KRAKTALPGLGDPIIGIDVTADGKWILATCK 638 (794)
T ss_pred eccc-----cccccCCCceEEEecCCc-eEEEEeCCCcEEeecccc---hhhhhcCCCCCCCeeEEEecCCCcEEEEeec
Confidence 1111 112344668899888888 799999999999999532 1233346677899999999999998876654
Q ss_pred CCcEEEEEc
Q psy9598 684 DGTALIWYY 692 (1915)
Q Consensus 684 DG~I~IWDl 692 (1915)
..|.|++.
T Consensus 639 -tyLlLi~t 646 (794)
T PF08553_consen 639 -TYLLLIDT 646 (794)
T ss_pred -ceEEEEEE
Confidence 56667765
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.68 Score=60.85 Aligned_cols=68 Identities=7% Similarity=-0.125 Sum_probs=45.9
Q ss_pred CCEEEEEeCCCcEEEEECCCCceEEEeecCC-CCeEE----------EEeccCccCCCcEEEEEeCCCeEEEEecccCcc
Q psy9598 530 NILLAAGTVDKTIRIWNLQTLAPISVLVGHQ-GIITG----------VNFCPLEVNGFNYLASTSTDGCIGFWKYKLDID 598 (1915)
Q Consensus 530 g~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~-~~V~s----------l~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~ 598 (1915)
+..|+.++.++.|.-.|..+|+.+..+.... ..+.. +++. +..++.++.|+.|.-.|..+++.
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~------~~~v~v~t~dg~l~ALDa~TGk~ 142 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALY------DGKVFFGTLDARLVALDAKTGKV 142 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEE------CCEEEEEcCCCEEEEEECCCCCE
Confidence 4466667778889889999998887764321 11111 1221 25677888999999999999987
Q ss_pred cccee
Q psy9598 599 ISKTV 603 (1915)
Q Consensus 599 ~~~~~ 603 (1915)
+....
T Consensus 143 ~W~~~ 147 (527)
T TIGR03075 143 VWSKK 147 (527)
T ss_pred Eeecc
Confidence 65544
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.25 Score=61.68 Aligned_cols=266 Identities=14% Similarity=0.128 Sum_probs=139.4
Q ss_pred CCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEE-EEeCC----------------CCCEEEEEEeCCCCEEEEEeC
Q psy9598 476 LSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLA-TLRGC----------------SGEISDIAIDNRNILLAAGTV 538 (1915)
Q Consensus 476 ~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~-~l~gH----------------~~~I~~Lafspdg~~LaSgs~ 538 (1915)
...+....|||+|++||... ++.|.++++.++...+ +..|- -+.-..+.|||||++||....
T Consensus 42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~ 120 (353)
T PF00930_consen 42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF 120 (353)
T ss_dssp ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEE
Confidence 56788899999999999886 5699999988885443 22220 012246889999999988764
Q ss_pred C-CcEEEEECCCCceEEEeecCCC---CeEEEEeccCccCCCcEEEEEeCCC--eEEEEecccCccccceeccCcccccc
Q psy9598 539 D-KTIRIWNLQTLAPISVLVGHQG---IITGVNFCPLEVNGFNYLASTSTDG--CIGFWKYKLDIDISKTVFHEPVMFNE 612 (1915)
Q Consensus 539 D-gtIrVWDl~tg~~~~~l~~h~~---~V~sl~fsp~~~~d~~~L~sgs~Dg--tI~iWDl~~~~~~~~~~~~~~~~~~~ 612 (1915)
| ..|..+.+. ....... .+..+.+-- .|..+. .+.++|+.++... .+..+ .
T Consensus 121 d~~~v~~~~~~------~~~~~~~~yp~~~~~~YPk----------~G~~np~v~l~v~~~~~~~~~---~~~~~----~ 177 (353)
T PF00930_consen 121 DEREVPEYPLP------DYSPPDSQYPEVESIRYPK----------AGDPNPRVSLFVVDLASGKTT---ELDPP----N 177 (353)
T ss_dssp E-TTS-EEEEE------EESSSTESS-EEEEEE--B----------TTS---EEEEEEEESSSTCCC---EE-------H
T ss_pred CCcCCceEEee------ccCCccccCCcccccccCC----------CCCcCCceEEEEEECCCCcEE---Eeeec----c
Confidence 4 444444321 1111111 234444421 122222 3556777766532 11100 0
Q ss_pred ccCCCCCceEEEEECCCCcEEEEE--eCCC---eEEEEEecCCCCCceeEEeccCCCCe---eEEEEc-CCCC-EEEEEe
Q psy9598 613 RIRPGNAHILCSSFSPGGLFLATG--SGDH---HVRVYKMDGVDSPLGILEVEEHSDKV---DSIQWS-HSHL-RFVSGS 682 (1915)
Q Consensus 613 ~~~~~~~~V~~l~fspdg~~Lasg--s~Dg---~I~IwDl~~~~~~~~i~~l~~h~~~V---~sl~fs-pdg~-~L~sgs 682 (1915)
........+..+.|.+++..|++. ..+. .+.++|+.... ...+. .....+.| ..+.|. +++. +|....
T Consensus 178 ~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~-~~~~~-~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~ 255 (353)
T PF00930_consen 178 SLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGE-TRVVL-EETSDGWVDVYDPPHFLGPDGNEFLWISE 255 (353)
T ss_dssp HHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTT-CEEEE-EEESSSSSSSSSEEEE-TTTSSEEEEEEE
T ss_pred ccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCc-eeEEE-EecCCcceeeecccccccCCCCEEEEEEE
Confidence 112234678999999999844433 3332 45566664322 22222 22223332 355554 5554 555556
Q ss_pred CCCcEEEEEccCCceEEeeecccccCCCCccccccccccccE-EEEEECCCCCEEEEEEecCC----eEEEEECCCCceE
Q psy9598 683 RDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKV-TMVAWDASDRWVITAINFNF----QIKIWDAFNGDLV 757 (1915)
Q Consensus 683 ~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V-~~va~spdg~~L~t~s~~Dg----~I~vwD~~tg~~i 757 (1915)
.+|.-+||-+....-.. ...+...-.| ..+.|++++..|+..+..++ .|+.-++..+..+
T Consensus 256 ~~G~~hly~~~~~~~~~---------------~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~ 320 (353)
T PF00930_consen 256 RDGYRHLYLYDLDGGKP---------------RQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEP 320 (353)
T ss_dssp TTSSEEEEEEETTSSEE---------------EESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEE
T ss_pred cCCCcEEEEEcccccce---------------eccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCe
Confidence 88876666544322110 1122233445 34788899888876665322 5766777634555
Q ss_pred EEeeCCCCCeEEEEEccCCCCEEEEE
Q psy9598 758 QVLKGHTNEVFVLESHPFDSRVLLSA 783 (1915)
Q Consensus 758 ~~l~gH~~~V~sl~~sp~dg~~LaSg 783 (1915)
..|....+....+.|+| ++++++..
T Consensus 321 ~~LT~~~~~~~~~~~Sp-dg~y~v~~ 345 (353)
T PF00930_consen 321 KCLTCEDGDHYSASFSP-DGKYYVDT 345 (353)
T ss_dssp EESSTTSSTTEEEEE-T-TSSEEEEE
T ss_pred EeccCCCCCceEEEECC-CCCEEEEE
Confidence 66665544447899999 77766543
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.38 Score=60.67 Aligned_cols=264 Identities=11% Similarity=0.027 Sum_probs=159.7
Q ss_pred cEEEEEEcCCCCEEEEEE-CCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCE-EEEEeCCCcEEEEECCCCceEEE
Q psy9598 478 AVFCVLFDKLGEVIVTGA-DDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNIL-LAAGTVDKTIRIWNLQTLAPISV 555 (1915)
Q Consensus 478 ~V~~vafspdg~~LaTGs-~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~-LaSgs~DgtIrVWDl~tg~~~~~ 555 (1915)
....+++.++|..+.... ....+.+.+............-...-..+++++.+.. .++...++.|.+.|+.+...++.
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~ 111 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGS 111 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeE
Confidence 445667777774444332 2224555555421111111111133457788888874 45555568999999888777766
Q ss_pred eecCCCCeEEEEeccCccCCCcEEEEE-e--CCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcE
Q psy9598 556 LVGHQGIITGVNFCPLEVNGFNYLAST-S--TDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLF 632 (1915)
Q Consensus 556 l~~h~~~V~sl~fsp~~~~d~~~L~sg-s--~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~ 632 (1915)
+.--. ....+++.+.+ ..++.+ + .++++.+.|..+...+...... ..+ ..++++|+|..
T Consensus 112 ~~vG~-~P~~~~~~~~~----~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG------------~~P-~~~a~~p~g~~ 173 (381)
T COG3391 112 IPVGL-GPVGLAVDPDG----KYVYVANAGNGNNTVSVIDAATNKVTATIPVG------------NTP-TGVAVDPDGNK 173 (381)
T ss_pred eeecc-CCceEEECCCC----CEEEEEecccCCceEEEEeCCCCeEEEEEecC------------CCc-ceEEECCCCCe
Confidence 54322 55788998853 444444 3 3688888888777654442211 122 78999999996
Q ss_pred EEEEe-CCCeEEEEEecCCCCCc-eeEEeccCCCCeeEEEEcCCCCEEEEEeCC---CcEEEEEccCCceEEeeeccccc
Q psy9598 633 LATGS-GDHHVRVYKMDGVDSPL-GILEVEEHSDKVDSIQWSHSHLRFVSGSRD---GTALIWYYKCSQWRFIRLDMNTC 707 (1915)
Q Consensus 633 Lasgs-~Dg~I~IwDl~~~~~~~-~i~~l~~h~~~V~sl~fspdg~~L~sgs~D---G~I~IWDl~~~~~~~~~~~~~~~ 707 (1915)
+++.. .++.|.++|........ .......-...-..+.++++|.++++.... +.+.+.|..++........
T Consensus 174 vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~---- 249 (381)
T COG3391 174 VYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLP---- 249 (381)
T ss_pred EEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccc----
Confidence 66655 78899999974322110 000011122334567899999966655443 5888888877664332110
Q ss_pred CCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCC---CeEEEEEcc
Q psy9598 708 LPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTN---EVFVLESHP 774 (1915)
Q Consensus 708 ~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~---~V~sl~~sp 774 (1915)
.... ....+.++|+|.++.+.....+.+.+.|..+......+..... .+..+++.+
T Consensus 250 ----------~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~ 308 (381)
T COG3391 250 ----------VGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISP 308 (381)
T ss_pred ----------cccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceecccee
Confidence 0111 3445889999999999876568999999988887777654433 355555555
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.59 Score=59.79 Aligned_cols=246 Identities=13% Similarity=0.056 Sum_probs=122.5
Q ss_pred cEEEEEEcCCCCEEEEE-ECCC----cEEEEECCCCcEEEEE-eCCCCCEEEEEEeCCCCEEEEEeCCC-----------
Q psy9598 478 AVFCVLFDKLGEVIVTG-ADDL----LIKLWRARDGKLLATL-RGCSGEISDIAIDNRNILLAAGTVDK----------- 540 (1915)
Q Consensus 478 ~V~~vafspdg~~LaTG-s~Dg----~I~IWd~~tg~~~~~l-~gH~~~I~~Lafspdg~~LaSgs~Dg----------- 540 (1915)
.+..+++||+|++||.+ +..| .|+|+|+.+|+.+... .+. ....+.|.++++.|+....+.
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~--~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~ 202 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP--KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPR 202 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE--ESEEEEECTTSSEEEEEECSTTTSS-CCGCCE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc--ccceEEEeCCCCEEEEEEeCcccccccCCCCc
Confidence 34467889999999866 3334 5999999999876532 321 123499999988776665433
Q ss_pred cEEEEECCCCceE--EEeecCCCC--eEEEEeccCccCCCcEEEEEe-CC---CeEEEEecccCc---cccceeccCccc
Q psy9598 541 TIRIWNLQTLAPI--SVLVGHQGI--ITGVNFCPLEVNGFNYLASTS-TD---GCIGFWKYKLDI---DISKTVFHEPVM 609 (1915)
Q Consensus 541 tIrVWDl~tg~~~--~~l~~h~~~--V~sl~fsp~~~~d~~~L~sgs-~D---gtI~iWDl~~~~---~~~~~~~~~~~~ 609 (1915)
.|++|.+.+...- ..+...... ...+..++ ++.+|+..+ .. ..|.+.++..+. ......
T Consensus 203 ~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~----d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l------ 272 (414)
T PF02897_consen 203 QVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSK----DGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLL------ 272 (414)
T ss_dssp EEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-T----TSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEE------
T ss_pred EEEEEECCCChHhCeeEEeecCCCcEEEEEEecC----cccEEEEEEEccccCCeEEEEeccccCCCcCCcEEE------
Confidence 3888888876532 444443333 45677776 346655433 22 235666665531 000110
Q ss_pred cccccCCCCCce-EEEEECCCCcEEEEEe---CCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEE-EEeCC
Q psy9598 610 FNERIRPGNAHI-LCSSFSPGGLFLATGS---GDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFV-SGSRD 684 (1915)
Q Consensus 610 ~~~~~~~~~~~V-~~l~fspdg~~Lasgs---~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~-sgs~D 684 (1915)
......+ ..+... ++.+++... .++.|...++...........+..|...+.-..+...+.+|+ +...+
T Consensus 273 -----~~~~~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~ 346 (414)
T PF02897_consen 273 -----SPREDGVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYREN 346 (414)
T ss_dssp -----EESSSS-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEET
T ss_pred -----eCCCCceEEEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEEC
Confidence 0111222 223333 444444332 235666666643322112224555555433333333444444 44444
Q ss_pred Cc--EEEEEcc-CCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEe---cCCeEEEEECCCCceE
Q psy9598 685 GT--ALIWYYK-CSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAIN---FNFQIKIWDAFNGDLV 757 (1915)
Q Consensus 685 G~--I~IWDl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~---~Dg~I~vwD~~tg~~i 757 (1915)
+. |++|++. +.....+.+ ...+.|..+...+++..+....+ .-++|+.||+.+++..
T Consensus 347 ~~~~l~v~~~~~~~~~~~~~~----------------p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 347 GSSRLRVYDLDDGKESREIPL----------------PEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELT 409 (414)
T ss_dssp TEEEEEEEETT-TEEEEEEES----------------SSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred CccEEEEEECCCCcEEeeecC----------------CcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence 43 6777777 322221111 11233455555555555444332 1346888888887654
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=96.79 E-value=2.6 Score=57.33 Aligned_cols=206 Identities=9% Similarity=0.005 Sum_probs=115.6
Q ss_pred CCEEEEEECCCcEEEEECCCCcEEEEEeCCCCC--------EEEEEEe----------------CCCCEEEEEeCCCcEE
Q psy9598 488 GEVIVTGADDLLIKLWRARDGKLLATLRGCSGE--------ISDIAID----------------NRNILLAAGTVDKTIR 543 (1915)
Q Consensus 488 g~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~--------I~~Lafs----------------pdg~~LaSgs~DgtIr 543 (1915)
+..|+.++.++.|.-.|..||+.+..+.-.... ...+++. ..+..|+.++.|+.|.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 567888888999999999999999887532211 1122221 1344788888999999
Q ss_pred EEECCCCceEEEeecCCCCeE-------------EEEeccCccCCCcEEEEEeC----------CCeEEEEecccCcccc
Q psy9598 544 IWNLQTLAPISVLVGHQGIIT-------------GVNFCPLEVNGFNYLASTST----------DGCIGFWKYKLDIDIS 600 (1915)
Q Consensus 544 VWDl~tg~~~~~l~~h~~~V~-------------sl~fsp~~~~d~~~L~sgs~----------DgtI~iWDl~~~~~~~ 600 (1915)
-.|..+|+.+..+.. .+.|. .+.-.|.- .+..+++|+. +|.|+-+|..+++.+.
T Consensus 274 ALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V--~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W 350 (764)
T TIGR03074 274 ALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLV--AGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVW 350 (764)
T ss_pred EEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEE--ECCEEEEEecccccccccCCCcEEEEEECCCCcEee
Confidence 999999998877632 22211 11112211 1245666643 6899999999998776
Q ss_pred ceeccCcccc-----ccccCCCCCce-EEEEECCCCcEEEEEeCCC------------------eEEEEEecCCCCCcee
Q psy9598 601 KTVFHEPVMF-----NERIRPGNAHI-LCSSFSPGGLFLATGSGDH------------------HVRVYKMDGVDSPLGI 656 (1915)
Q Consensus 601 ~~~~~~~~~~-----~~~~~~~~~~V-~~l~fspdg~~Lasgs~Dg------------------~I~IwDl~~~~~~~~i 656 (1915)
......+... ...+..+...+ ..+++.+...+++.+..+. .|.-.|+. +....
T Consensus 351 ~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~---TGk~~ 427 (764)
T TIGR03074 351 AWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDAT---TGKER 427 (764)
T ss_pred EEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCC---CCceE
Confidence 6554321110 01111111122 3456666655555543322 23333332 11222
Q ss_pred EEecc--CC-------CCeeEEEEcC-CCC---EEEEEeCCCcEEEEEccCCceEE
Q psy9598 657 LEVEE--HS-------DKVDSIQWSH-SHL---RFVSGSRDGTALIWYYKCSQWRF 699 (1915)
Q Consensus 657 ~~l~~--h~-------~~V~sl~fsp-dg~---~L~sgs~DG~I~IWDl~~~~~~~ 699 (1915)
-.++. |. ....-+.+.. +|. .++.++.+|.+.+.|-.+++.+.
T Consensus 428 W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~ 483 (764)
T TIGR03074 428 WVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIV 483 (764)
T ss_pred EEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEe
Confidence 22221 11 0011112222 553 78899999999999999988654
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.17 Score=62.30 Aligned_cols=222 Identities=10% Similarity=0.074 Sum_probs=117.9
Q ss_pred eEEEEecccCccccceeccCccccccccCCCCCceEEE---EECCC----CcEEEEEeC----------CCeEEEEEecC
Q psy9598 587 CIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCS---SFSPG----GLFLATGSG----------DHHVRVYKMDG 649 (1915)
Q Consensus 587 tI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l---~fspd----g~~Lasgs~----------Dg~I~IwDl~~ 649 (1915)
.|++.|..+...+....+.. ...+.|+ .|..+ ..+|++|+. .|.|.+|++..
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~-----------~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~ 71 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEP-----------NEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISE 71 (321)
T ss_dssp EEEEEETTTSSEEEEEEEET-----------TEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECS
T ss_pred EEEEEeCCCCeEEEEEECCC-----------CceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEc
Confidence 56777776665544444331 1233333 33332 467777754 28999999954
Q ss_pred C-C--CCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCc-eEEeeecccccCCCCccccccccccccEE
Q psy9598 650 V-D--SPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQ-WRFIRLDMNTCLPHTKETSDETNKKIKVT 725 (1915)
Q Consensus 650 ~-~--~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~V~ 725 (1915)
. . ............++|++|+-. +| +|+++. ++.|.+|++.... +..... ......++
T Consensus 72 ~~~~~~~l~~i~~~~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~~l~~~~~---------------~~~~~~i~ 133 (321)
T PF03178_consen 72 SPENNFKLKLIHSTEVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSKTLLKKAF---------------YDSPFYIT 133 (321)
T ss_dssp S-----EEEEEEEEEESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTSSEEEEEE---------------E-BSSSEE
T ss_pred ccccceEEEEEEEEeecCcceEhhhh-CC-EEEEee-cCEEEEEEccCcccchhhhe---------------ecceEEEE
Confidence 2 1 111222234557889999865 34 444443 4899999998877 333211 11122455
Q ss_pred EEEECCCCCEEEEEEecCCeEEEEECCC-CceEEEee--CCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCcc--c
Q psy9598 726 MVAWDASDRWVITAINFNFQIKIWDAFN-GDLVQVLK--GHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQ--R 800 (1915)
Q Consensus 726 ~va~spdg~~L~t~s~~Dg~I~vwD~~t-g~~i~~l~--gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~--~ 800 (1915)
++... +.+|++|.. -..|.++.... ...+..+. .....++++.|-+ ++..++.+..+|.|.++....... .
T Consensus 134 sl~~~--~~~I~vgD~-~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~-d~~~~i~~D~~gnl~~l~~~~~~~~~~ 209 (321)
T PF03178_consen 134 SLSVF--KNYILVGDA-MKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLV-DEDTIIVGDKDGNLFVLRYNPEIPNSR 209 (321)
T ss_dssp EEEEE--TTEEEEEES-SSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE--SSSEEEEEETTSEEEEEEE-SS-SSTT
T ss_pred EEecc--ccEEEEEEc-ccCEEEEEEEccCCEEEEEEecCCCccEEEEEEec-CCcEEEEEcCCCeEEEEEECCCCcccc
Confidence 55544 568888877 55566553332 22222222 2344688888886 446999999999999998863211 0
Q ss_pred cce-eeeeeecCCCCcceEEE---EEcC--CC------CEEEEEeCCCeEEEE
Q psy9598 801 GYK-WFHNIVEGQGEGALFDG---KWSP--DG------TTCALTDSYGHLLVY 841 (1915)
Q Consensus 801 ~~~-~~~~~~~~~~~~~V~~v---afSp--dg------~~Lasg~~dG~I~Iw 841 (1915)
... .+......+....|+++ ++.| .+ ..++.++.+|.|.+.
T Consensus 210 ~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 210 DGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp TTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred cccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 000 11111112233456665 5455 22 248888889988733
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >KOG4640|consensus | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.0064 Score=75.89 Aligned_cols=93 Identities=15% Similarity=0.117 Sum_probs=78.1
Q ss_pred CcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEE-EEEEeCCCCEEEEEeCCCcEEEEECCCCceEEE
Q psy9598 477 SAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEIS-DIAIDNRNILLAAGTVDKTIRIWNLQTLAPISV 555 (1915)
Q Consensus 477 ~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~-~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~ 555 (1915)
..|.-+.|+|.-.+||++..+|.|.+..+. .+.+.++.-|...++ +++|.|||++||.|-.||+|++.|+.++..+..
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~ 99 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS 99 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence 567789999999999999999999999987 888889988888888 999999999999999999999999999877655
Q ss_pred e-ecCCCCeEEEEecc
Q psy9598 556 L-VGHQGIITGVNFCP 570 (1915)
Q Consensus 556 l-~~h~~~V~sl~fsp 570 (1915)
. ..-...|.++-|.+
T Consensus 100 ~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 100 FLFSVETDISKGIWDR 115 (665)
T ss_pred cccccccchheeeccc
Confidence 3 12334566666653
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.13 Score=65.07 Aligned_cols=168 Identities=18% Similarity=0.115 Sum_probs=97.6
Q ss_pred CcEEEEEeCCCCCEEEEEEeCCCCEEEEEe---CC-CcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEe
Q psy9598 508 GKLLATLRGCSGEISDIAIDNRNILLAAGT---VD-KTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTS 583 (1915)
Q Consensus 508 g~~~~~l~gH~~~I~~Lafspdg~~LaSgs---~D-gtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs 583 (1915)
|.....+..-...+..-+|++++..|+-.+ .. ..|.++++.++.....+. ..+.-...+|+|++ ..++++..
T Consensus 182 g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG---~~l~f~~~ 257 (425)
T COG0823 182 GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDG---SKLAFSSS 257 (425)
T ss_pred CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCC---CEEEEEEC
Confidence 444445554556677788999988766543 22 469999999887654443 23333566899954 46677777
Q ss_pred CCCeEEEE--ecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeC-CCe--EEEEEecCCCCCceeEE
Q psy9598 584 TDGCIGFW--KYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSG-DHH--VRVYKMDGVDSPLGILE 658 (1915)
Q Consensus 584 ~DgtI~iW--Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~-Dg~--I~IwDl~~~~~~~~i~~ 658 (1915)
.||...|| |+.+.... .+ ....+.-..=+|+|+|+.|+..+. .|. |.++++.+.. ....+
T Consensus 258 rdg~~~iy~~dl~~~~~~-~L------------t~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~--~~riT 322 (425)
T COG0823 258 RDGSPDIYLMDLDGKNLP-RL------------TNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQ--VTRLT 322 (425)
T ss_pred CCCCccEEEEcCCCCcce-ec------------ccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCc--eeEee
Confidence 88876655 55544311 11 111122235689999998876654 454 4444543322 22222
Q ss_pred eccCCCCeeEEEEcCCCCEEEEEeCC-Cc--EEEEEccCCc
Q psy9598 659 VEEHSDKVDSIQWSHSHLRFVSGSRD-GT--ALIWYYKCSQ 696 (1915)
Q Consensus 659 l~~h~~~V~sl~fspdg~~L~sgs~D-G~--I~IWDl~~~~ 696 (1915)
..+.. -..-.|+|+|.+|+..+.. |. |.+.|+.++.
T Consensus 323 ~~~~~--~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~ 361 (425)
T COG0823 323 FSGGG--NSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGG 361 (425)
T ss_pred ccCCC--CcCccCCCCCCEEEEEeccCCceeeEEeccCCCC
Confidence 32222 2266799999998877643 44 5555554443
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.39 Score=60.98 Aligned_cols=202 Identities=17% Similarity=0.157 Sum_probs=109.7
Q ss_pred cEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEE---eCC-CeEEEEecccCccccceeccCccccccccCC
Q psy9598 541 TIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLAST---STD-GCIGFWKYKLDIDISKTVFHEPVMFNERIRP 616 (1915)
Q Consensus 541 tIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sg---s~D-gtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~ 616 (1915)
.+.+-|.. |.....+......+..-.|+|++ ..++.. ... ..+.++++.++.......+.
T Consensus 174 ~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~----~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~----------- 237 (425)
T COG0823 174 ELALGDYD-GYNQQKLTDSGSLILTPAWSPDG----KKLAYVSFELGGCPRIYYLDLNTGKRPVILNFN----------- 237 (425)
T ss_pred eEEEEccC-CcceeEecccCcceeccccCcCC----CceEEEEEecCCCceEEEEeccCCccceeeccC-----------
Confidence 34444443 55555555555567777888854 333322 222 46889999888654333322
Q ss_pred CCCceEEEEECCCCcEEEEE-eCCCe--EEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEE-eCCCcEEEE--
Q psy9598 617 GNAHILCSSFSPGGLFLATG-SGDHH--VRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSG-SRDGTALIW-- 690 (1915)
Q Consensus 617 ~~~~V~~l~fspdg~~Lasg-s~Dg~--I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sg-s~DG~I~IW-- 690 (1915)
+.-..-+|+|||+.|+.. ..||. |.++|+.+.. ...+....+.-..=.|+|+|+.++-. +..|.-.||
T Consensus 238 --g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~----~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~ 311 (425)
T COG0823 238 --GNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKN----LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLY 311 (425)
T ss_pred --CccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCc----ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEE
Confidence 333456899999876654 45665 4555654333 12232222323355699999977654 455665555
Q ss_pred EccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCe--EEEEECCCCceEEEeeCCCCCeE
Q psy9598 691 YYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQ--IKIWDAFNGDLVQVLKGHTNEVF 768 (1915)
Q Consensus 691 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~--I~vwD~~tg~~i~~l~gH~~~V~ 768 (1915)
++.......+.. ....-..-.|+|+|.+|+..+..+|. |.+.|+.++..+..+. +.....
T Consensus 312 ~~~g~~~~riT~-----------------~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt-~~~~~e 373 (425)
T COG0823 312 DLEGSQVTRLTF-----------------SGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILT-STYLNE 373 (425)
T ss_pred CCCCCceeEeec-----------------cCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEcc-ccccCC
Confidence 444443222111 11111156799999999988753444 6666766655444443 222233
Q ss_pred EEEEccCCCCEEEEE
Q psy9598 769 VLESHPFDSRVLLSA 783 (1915)
Q Consensus 769 sl~~sp~dg~~LaSg 783 (1915)
.-+|.+ ++..++..
T Consensus 374 ~ps~~~-ng~~i~~~ 387 (425)
T COG0823 374 SPSWAP-NGRMIMFS 387 (425)
T ss_pred CCCcCC-CCceEEEe
Confidence 344566 55555443
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.13 Score=51.63 Aligned_cols=104 Identities=13% Similarity=0.266 Sum_probs=73.3
Q ss_pred EEEEEEcC---CC-CEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEE
Q psy9598 479 VFCVLFDK---LG-EVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPIS 554 (1915)
Q Consensus 479 V~~vafsp---dg-~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~ 554 (1915)
|+++++.. +| .-|++||.|..|+||+- ..++..+. -++.|++|+-... ..++.|..+|+|-||+-. ..+.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~-e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~--~RlW 75 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEIT-ETDKVTSLCSLGG-GRFAYALANGTVGVYDRS--QRLW 75 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEe-cccceEEEEEcCC-CEEEEEecCCEEEEEeCc--ceee
Confidence 66776653 32 67999999999999994 36777766 3467888877666 568888999999999752 3334
Q ss_pred EeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEE
Q psy9598 555 VLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIG 589 (1915)
Q Consensus 555 ~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~ 589 (1915)
.+.. ...++++++....-++..-|++|-.+|.|-
T Consensus 76 RiKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 76 RIKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 4443 234777777765434456789999888764
|
|
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.38 E-value=2.9 Score=48.64 Aligned_cols=312 Identities=14% Similarity=0.060 Sum_probs=0.0
Q ss_pred EEEEEECCCcEEEEECCCCcEEEEEeCCC-CCEEEEEEeCCCCEEEEEeCCCcEEEEECC--CCceEEEeecCCCCeEEE
Q psy9598 490 VIVTGADDLLIKLWRARDGKLLATLRGCS-GEISDIAIDNRNILLAAGTVDKTIRIWNLQ--TLAPISVLVGHQGIITGV 566 (1915)
Q Consensus 490 ~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~-~~I~~Lafspdg~~LaSgs~DgtIrVWDl~--tg~~~~~l~~h~~~V~sl 566 (1915)
.+++|+.+|.- ..-..-..+-||- ..|..+.....-.++..|-.=-.+-+|+.. +.-.+...-.-.+.+..+
T Consensus 18 v~It~s~~gva-----~d~~v~~~~vghfg~~vsavdv~~~ya~v~qG~~l~i~ditn~~~~t~~~l~~~i~~~~l~~Dv 92 (370)
T COG5276 18 VLITGSDDGVA-----VDVHVGYAYVGHFGKGVSAVDVRGAYAYVGQGFILAILDITNVSLQTHDVLLSVINARDLFADV 92 (370)
T ss_pred EEEecccccee-----eccccceEEeeeccCCcccccccccccccccCceEeeccccCcccccCcceEEEEehhhhhhee
Q ss_pred EeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEE
Q psy9598 567 NFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYK 646 (1915)
Q Consensus 567 ~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwD 646 (1915)
.++. ++.+.+..+.-++|.|+.+........+- ...-+.-.|.-.|++..++..+.-+.+.|
T Consensus 93 ~vse------~yvyvad~ssGL~IvDIS~P~sP~~~~~l------------nt~gyaygv~vsGn~aYVadlddgfLivd 154 (370)
T COG5276 93 RVSE------EYVYVADWSSGLRIVDISTPDSPTLIGFL------------NTDGYAYGVYVSGNYAYVADLDDGFLIVD 154 (370)
T ss_pred Eecc------cEEEEEcCCCceEEEeccCCCCcceeccc------------cCCceEEEEEecCCEEEEeeccCcEEEEE
Q ss_pred ecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEE
Q psy9598 647 MDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTM 726 (1915)
Q Consensus 647 l~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~ 726 (1915)
+.....+............-..++.| |++...+..|+-+.|-|+.... .+...........+.+
T Consensus 155 vsdpssP~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~--------------sPvli~~~n~g~g~~s 218 (370)
T COG5276 155 VSDPSSPQLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPH--------------SPVLIGSYNTGPGTYS 218 (370)
T ss_pred CCCCCCceeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCC--------------CCeEEEEEecCCceEE
Q ss_pred EEECCCCCEEEEEEecCCeEEEEECCCCceEEEee-CCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceee
Q psy9598 727 VAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLK-GHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWF 805 (1915)
Q Consensus 727 va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~-gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~ 805 (1915)
+..+++-.+++.. +--+.+-|..+......+. -....+.++.--+..+.+...+..+.-+-+-|+.+... ....
T Consensus 219 v~vsdnr~y~vvy---~egvlivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~s--pfl~ 293 (370)
T COG5276 219 VSVSDNRAYLVVY---DEGVLIVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPPS--PFLS 293 (370)
T ss_pred EEecCCeeEEEEc---ccceEEEecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEeccCCCC--Cchh
Q ss_pred eeeecCCCCcc-------------------------------------eEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q psy9598 806 HNIVEGQGEGA-------------------------------------LFDGKWSPDGTTCALTDSYGHLLVYGLGG 845 (1915)
Q Consensus 806 ~~~~~~~~~~~-------------------------------------V~~vafSpdg~~Lasg~~dG~I~Iwdl~s 845 (1915)
........... +.+++.+-+.+.+.+.+.+|-+.||+..+
T Consensus 294 ss~~t~g~~a~gi~ay~~y~yiadkn~g~vV~~s~~s~m~~~~g~~ti~~s~~v~~~~q~~y~~d~~~gl~i~~~~~ 370 (370)
T COG5276 294 SSLDTAGYQAAGIRAYGNYNYIADKNTGAVVDASPPSMMDKRPGRPTIGQSCDVSVDTQIIYSTDYNGGLSIIEYLG 370 (370)
T ss_pred ccccCCCccccceEEecCeeEeccCCceEEEeCCChhhcccccCcceEeeecceEEEeeEEEEeecCCCEEEEEecC
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.0077 Score=46.80 Aligned_cols=39 Identities=36% Similarity=0.729 Sum_probs=35.3
Q ss_pred CcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEE
Q psy9598 508 GKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWN 546 (1915)
Q Consensus 508 g~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWD 546 (1915)
+.++..+.+|...|.++.|++.+.++++|+.|+.|++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 456777888999999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.051 Score=72.39 Aligned_cols=135 Identities=12% Similarity=0.084 Sum_probs=90.0
Q ss_pred ECCCcEEEEECCCCcEEEEEeCCCCC-EEEEEEeC-----CCCEEEEEeCCCcEEEEECCCCc-eEEEeec----CCCCe
Q psy9598 495 ADDLLIKLWRARDGKLLATLRGCSGE-ISDIAIDN-----RNILLAAGTVDKTIRIWNLQTLA-PISVLVG----HQGII 563 (1915)
Q Consensus 495 s~Dg~I~IWd~~tg~~~~~l~gH~~~-I~~Lafsp-----dg~~LaSgs~DgtIrVWDl~tg~-~~~~l~~----h~~~V 563 (1915)
.....|.-.|+..|+.+..+..|... |.+++-.. ++.-.+.|-.+..|..||.+-.. .+..-.. .....
T Consensus 501 ~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~F 580 (794)
T PF08553_consen 501 NNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNF 580 (794)
T ss_pred CCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCc
Confidence 34578899999999999999887754 66665321 12345567778899999997532 2211112 23345
Q ss_pred EEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEE
Q psy9598 564 TGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVR 643 (1915)
Q Consensus 564 ~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~ 643 (1915)
+|++-+. ..+||+|+.+|.|++||-- +.. . ...+.+-..+|.+|..+.||++|++.+.. .|.
T Consensus 581 s~~aTt~-----~G~iavgs~~G~IRLyd~~-g~~-A----------KT~lp~lG~pI~~iDvt~DGkwilaTc~t-yLl 642 (794)
T PF08553_consen 581 SCFATTE-----DGYIAVGSNKGDIRLYDRL-GKR-A----------KTALPGLGDPIIGIDVTADGKWILATCKT-YLL 642 (794)
T ss_pred eEEEecC-----CceEEEEeCCCcEEeeccc-chh-h----------hhcCCCCCCCeeEEEecCCCcEEEEeecc-eEE
Confidence 6665544 4699999999999999832 211 1 11122335889999999999998877654 566
Q ss_pred EEEe
Q psy9598 644 VYKM 647 (1915)
Q Consensus 644 IwDl 647 (1915)
|++.
T Consensus 643 Li~t 646 (794)
T PF08553_consen 643 LIDT 646 (794)
T ss_pred EEEE
Confidence 6665
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.0079 Score=46.74 Aligned_cols=37 Identities=32% Similarity=0.444 Sum_probs=33.2
Q ss_pred eeEEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEE
Q psy9598 468 QHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWR 504 (1915)
Q Consensus 468 ~~~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd 504 (1915)
....+.+|...|+++.|++.+.++++|+.|+.|++|+
T Consensus 4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 3456678999999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >KOG3630|consensus | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.044 Score=72.49 Aligned_cols=147 Identities=14% Similarity=0.014 Sum_probs=92.1
Q ss_pred CCEEEEEEeCCCCEEEEEe--CCCcEEEEECCCCceE-----EEe------ecCCCCeEEEEeccCccCCCcEEEEEeCC
Q psy9598 519 GEISDIAIDNRNILLAAGT--VDKTIRIWNLQTLAPI-----SVL------VGHQGIITGVNFCPLEVNGFNYLASTSTD 585 (1915)
Q Consensus 519 ~~I~~Lafspdg~~LaSgs--~DgtIrVWDl~tg~~~-----~~l------~~h~~~V~sl~fsp~~~~d~~~L~sgs~D 585 (1915)
-.|..+.+++|+...++.. .+-.|.+||+.+.... ..| ......+.++.|+|.-+ ...+.+..|
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp---~n~av~l~d 177 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVP---LNSAVDLSD 177 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCcc---chhhhhccc
Confidence 3566777778876555443 3447899999753221 111 12234567888998653 566777888
Q ss_pred CeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEecc-CCC
Q psy9598 586 GCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEE-HSD 664 (1915)
Q Consensus 586 gtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~-h~~ 664 (1915)
+.|++..+....... ...+-...++|++|+|.|..+++|-..|++.-|-... .....+..... ...
T Consensus 178 lsl~V~~~~~~~~~v------------~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~l-eik~~ip~Pp~~e~y 244 (1405)
T KOG3630|consen 178 LSLRVKSTKQLAQNV------------TSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSL-EIKSEIPEPPVEENY 244 (1405)
T ss_pred cchhhhhhhhhhhhh------------cccCcccceeeEEeccccceeeEecCCCeEEEeeccc-ceeecccCCCcCCCc
Confidence 888887654321100 0012336789999999999999999999999887632 11111111111 147
Q ss_pred CeeEEEEcCCCCEEEEE
Q psy9598 665 KVDSIQWSHSHLRFVSG 681 (1915)
Q Consensus 665 ~V~sl~fspdg~~L~sg 681 (1915)
.|.+|+|-....+|++-
T Consensus 245 rvl~v~Wl~t~eflvvy 261 (1405)
T KOG3630|consen 245 RVLSVTWLSTQEFLVVY 261 (1405)
T ss_pred ceeEEEEecceeEEEEe
Confidence 79999998777666654
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.91 Score=52.99 Aligned_cols=176 Identities=10% Similarity=0.067 Sum_probs=114.9
Q ss_pred EeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecC-CCCeEEEEeccCccCCCcEEEEEeCCCeEEEEe
Q psy9598 514 LRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGH-QGIITGVNFCPLEVNGFNYLASTSTDGCIGFWK 592 (1915)
Q Consensus 514 l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h-~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWD 592 (1915)
+.|-...|.+|.|+|+.+.|++......-.||=...|..+.++.-. -...-.|.|.- ++.+.++--.++.+.++.
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig----~n~fvi~dER~~~l~~~~ 156 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIG----GNQFVIVDERDRALYLFT 156 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEec----CCEEEEEehhcceEEEEE
Confidence 3455666999999999999999998888888888889988876421 23345666664 557777777889998888
Q ss_pred cccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCC-------CC
Q psy9598 593 YKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHS-------DK 665 (1915)
Q Consensus 593 l~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~-------~~ 665 (1915)
+............ ... .......+...-.++|+|....|+.+-.-.-+.||.+........+.....+. ..
T Consensus 157 vd~~t~~~~~~~~-~i~-L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~D 234 (316)
T COG3204 157 VDADTTVISAKVQ-KIP-LGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLD 234 (316)
T ss_pred EcCCccEEeccce-EEe-ccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeec
Confidence 7766432222110 011 11111225667889999998888888888888888875433233222222222 34
Q ss_pred eeEEEEcCC-CCEEEEEeCCCcEEEEEccCC
Q psy9598 666 VDSIQWSHS-HLRFVSGSRDGTALIWYYKCS 695 (1915)
Q Consensus 666 V~sl~fspd-g~~L~sgs~DG~I~IWDl~~~ 695 (1915)
|.++.|++. +.+|+-+..++.+.-.|....
T Consensus 235 vSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 235 VSGLEFNAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred cccceecCCCCcEEEEecCCceEEEEecCCC
Confidence 677778764 456666667777777666544
|
|
| >KOG2444|consensus | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.0067 Score=67.48 Aligned_cols=144 Identities=12% Similarity=0.104 Sum_probs=78.8
Q ss_pred EEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCC
Q psy9598 632 FLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHT 711 (1915)
Q Consensus 632 ~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~ 711 (1915)
.|...+.+|.|+-++++... .....-..|... . ....-+..+++|+.+|.|.+|........
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k--~s~rse~~~~e~-~--~v~~~~~~~~vG~~dg~v~~~n~n~~g~~------------- 93 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHK--ESCRSERFIDEG-Q--RVVTASAKLMVGTSDGAVYVFNWNLEGAH------------- 93 (238)
T ss_pred hhccccCCcccccchhhhhh--hhhhhhhhhhcc-e--eecccCceEEeecccceEEEecCCccchH-------------
Confidence 34455677777777763211 000111111111 1 11223457999999999999976521100
Q ss_pred ccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCC-CCeEEEEEccCCCCEEEEE--ecCce
Q psy9598 712 KETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHT-NEVFVLESHPFDSRVLLSA--GHDGL 788 (1915)
Q Consensus 712 ~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~-~~V~sl~~sp~dg~~LaSg--s~DG~ 788 (1915)
............+.|.-..++.+..+++. +|.|+.|++.-++.+.....|. .++..+..+. .+.+|+.+ |.|..
T Consensus 94 -~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~-dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~-sd~~i~~a~~S~d~~ 170 (238)
T KOG2444|consen 94 -SDRVCSGEESIDLGIPNGRDSSLGCVGAQ-DGRIRACNIKPNKVLGYVGQHNFESGEELIVVG-SDEFLKIADTSHDRV 170 (238)
T ss_pred -HHhhhcccccceeccccccccceeEEecc-CCceeeeccccCceeeeeccccCCCcceeEEec-CCceEEeeccccchh
Confidence 00001111222333333344556666666 9999999999888888887777 4444444444 45556555 66666
Q ss_pred EEEEECCC
Q psy9598 789 IIIWDILS 796 (1915)
Q Consensus 789 I~IWdl~s 796 (1915)
++.|++..
T Consensus 171 ~k~W~ve~ 178 (238)
T KOG2444|consen 171 LKKWNVEK 178 (238)
T ss_pred hhhcchhh
Confidence 66666643
|
|
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=96.03 E-value=6.8 Score=49.50 Aligned_cols=306 Identities=12% Similarity=0.084 Sum_probs=149.9
Q ss_pred CCEEEEEeCCCcEEEEECCCCc--eEEEe--ecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccce--e
Q psy9598 530 NILLAAGTVDKTIRIWNLQTLA--PISVL--VGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKT--V 603 (1915)
Q Consensus 530 g~~LaSgs~DgtIrVWDl~tg~--~~~~l--~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~--~ 603 (1915)
...|++||..|.++||+..... ....+ ..-..+|..|..-....+.....++.=.-..+.+|.+......... .
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~~ 116 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGNQ 116 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCcE
Confidence 4589999999999999985433 11111 1234677777765532222333444455667888877332211000 0
Q ss_pred ccCccccccccCCCCCceEEEEECC-C-CcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEE
Q psy9598 604 FHEPVMFNERIRPGNAHILCSSFSP-G-GLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSG 681 (1915)
Q Consensus 604 ~~~~~~~~~~~~~~~~~V~~l~fsp-d-g~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sg 681 (1915)
......+...+........+..|-. . ..+|.+-+.||.+.+|+-+. ......+.. .--...|+|++....|+++
T Consensus 117 ~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~---~~f~~~lp~-~llPgPl~Y~~~tDsfvt~ 192 (418)
T PF14727_consen 117 YQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQES---FAFSRFLPD-FLLPGPLCYCPRTDSFVTA 192 (418)
T ss_pred EEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCc---EEEEEEcCC-CCCCcCeEEeecCCEEEEe
Confidence 0000011111111111122222222 1 35788889999999998632 111112222 2223456788888899999
Q ss_pred eCCCcEEEEEccCCceEEeeec-----ccccCCCCccc----cccccccccEEEEEECCCCCEEEEEEecCCeEEEEECC
Q psy9598 682 SRDGTALIWYYKCSQWRFIRLD-----MNTCLPHTKET----SDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAF 752 (1915)
Q Consensus 682 s~DG~I~IWDl~~~~~~~~~~~-----~~~~~~~~~~~----~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~ 752 (1915)
+.+..+..|.+..-........ ........... .........|..+.++.....|++-+ ..++.+.+.
T Consensus 193 sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~IvvLg--er~Lf~l~~- 269 (418)
T PF14727_consen 193 SSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSSSESDIVVLG--ERSLFCLKD- 269 (418)
T ss_pred cCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcCCCCceEEEEe--cceEEEEcC-
Confidence 9999999987643211000000 00000000000 00111222344444544444444444 467777765
Q ss_pred CCceEEEeeCCCCCeEEEE-E------ccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCC
Q psy9598 753 NGDLVQVLKGHTNEVFVLE-S------HPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPD 825 (1915)
Q Consensus 753 tg~~i~~l~gH~~~V~sl~-~------sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpd 825 (1915)
+|.+....+- .....+++ | .+.....++.++.++++.||.=.+ +.+-.. + ....-+|.-..|..-
T Consensus 270 ~G~l~~~krL-d~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~-----L~WsA~-l-~~~PVal~v~~~~~~ 341 (418)
T PF14727_consen 270 NGSLRFQKRL-DYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTT-----LVWSAQ-L-PHVPVALSVANFNGL 341 (418)
T ss_pred CCeEEEEEec-CCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCe-----EEEecC-C-CCCCEEEEecccCCC
Confidence 4654444332 22222222 1 121123588899999999986432 222110 0 011112233334444
Q ss_pred CCEEEEEeCCCeEEEEeCCCCcccc
Q psy9598 826 GTTCALTDSYGHLLVYGLGGFKRPQ 850 (1915)
Q Consensus 826 g~~Lasg~~dG~I~Iwdl~s~~~~~ 850 (1915)
...|++-+.+|+|.+-=+++.-...
T Consensus 342 ~G~IV~Ls~~G~L~v~YLGTdPs~~ 366 (418)
T PF14727_consen 342 KGLIVSLSDEGQLSVSYLGTDPSLF 366 (418)
T ss_pred CceEEEEcCCCcEEEEEeCCCCccc
Confidence 5678888889999888777654333
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=96.01 E-value=1.4 Score=54.59 Aligned_cols=241 Identities=7% Similarity=0.008 Sum_probs=103.7
Q ss_pred CCCEEEEEE-CCCcEEEEECCC----CcEEEEEeC---CC----CCEEEEEEeCCCCEEEEEeC------CCcEEEEECC
Q psy9598 487 LGEVIVTGA-DDLLIKLWRARD----GKLLATLRG---CS----GEISDIAIDNRNILLAAGTV------DKTIRIWNLQ 548 (1915)
Q Consensus 487 dg~~LaTGs-~Dg~I~IWd~~t----g~~~~~l~g---H~----~~I~~Lafspdg~~LaSgs~------DgtIrVWDl~ 548 (1915)
..++|+..+ ..+.|.|+|+.+ -++.+++.. +. +.-..+..-|+|.+++|+-. -|-+.+.|-.
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 457777777 568999999874 355666542 11 12233444578888888633 2468888888
Q ss_pred CCceEEEeecCC---CCeEEEEeccCccCCCcEEEEEe--------------------CCCeEEEEecccCccccceecc
Q psy9598 549 TLAPISVLVGHQ---GIITGVNFCPLEVNGFNYLASTS--------------------TDGCIGFWKYKLDIDISKTVFH 605 (1915)
Q Consensus 549 tg~~~~~l~~h~---~~V~sl~fsp~~~~d~~~L~sgs--------------------~DgtI~iWDl~~~~~~~~~~~~ 605 (1915)
+........... ..-..+-|.|.. +.++|.. ...++.+||+.+.+.++.+.+.
T Consensus 166 tf~v~g~We~~~~~~~~gYDfw~qpr~----nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg 241 (461)
T PF05694_consen 166 TFEVKGRWEKDRGPQPFGYDFWYQPRH----NVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLG 241 (461)
T ss_dssp T--EEEE--SB-TT------EEEETTT----TEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-
T ss_pred cccccceeccCCCCCCCCCCeEEcCCC----CEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecC
Confidence 877776665322 233456666633 6666654 2458999999998877766654
Q ss_pred CccccccccCCCCCceEEEEECCC--CcEEEEE-eCCCeEEEEEecCCCC--CceeEEecc-----------------CC
Q psy9598 606 EPVMFNERIRPGNAHILCSSFSPG--GLFLATG-SGDHHVRVYKMDGVDS--PLGILEVEE-----------------HS 663 (1915)
Q Consensus 606 ~~~~~~~~~~~~~~~V~~l~fspd--g~~Lasg-s~Dg~I~IwDl~~~~~--~~~i~~l~~-----------------h~ 663 (1915)
.. ......+.|..+ ..+=++| -..++|..|--..... ...+..+.. -.
T Consensus 242 ~~----------g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P 311 (461)
T PF05694_consen 242 EE----------GQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVP 311 (461)
T ss_dssp TT----------EEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE-
T ss_pred CC----------CCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCC
Confidence 21 122344555433 3332222 2333444443311111 112222211 13
Q ss_pred CCeeEEEEcCCCCEEEEEe-CCCcEEEEEccCCceEEeee--cccccCCC-CccccccccccccEEEEEECCCCCEEEEE
Q psy9598 664 DKVDSIQWSHSHLRFVSGS-RDGTALIWYYKCSQWRFIRL--DMNTCLPH-TKETSDETNKKIKVTMVAWDASDRWVITA 739 (1915)
Q Consensus 664 ~~V~sl~fspdg~~L~sgs-~DG~I~IWDl~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~V~~va~spdg~~L~t~ 739 (1915)
.-|+.|.+|.|.++|+.++ .+|.|+.||+.....-...- .+...... ...........+...+|..|.||+.|+++
T Consensus 312 ~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvT 391 (461)
T PF05694_consen 312 PLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVT 391 (461)
T ss_dssp -----EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE
T ss_pred CceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEE
Confidence 4578999999999887555 78999999998654222111 11111100 00111112234556889999999999988
Q ss_pred Ee
Q psy9598 740 IN 741 (1915)
Q Consensus 740 s~ 741 (1915)
.+
T Consensus 392 nS 393 (461)
T PF05694_consen 392 NS 393 (461)
T ss_dssp --
T ss_pred ee
Confidence 65
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.89 E-value=1.3 Score=53.90 Aligned_cols=231 Identities=11% Similarity=-0.019 Sum_probs=123.4
Q ss_pred EEeCCCC-EEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCcccccee
Q psy9598 525 AIDNRNI-LLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTV 603 (1915)
Q Consensus 525 afspdg~-~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~ 603 (1915)
.|.++.. ++.+--..+.|.-|+..++.... +. +.+.+.++.... .+..|+++.. | +.+++..++.....+.
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~-~~-~p~~~~~~~~~d----~~g~Lv~~~~-g-~~~~~~~~~~~~t~~~ 102 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKKRV-FP-SPGGFSSGALID----AGGRLIACEH-G-VRLLDPDTGGKITLLA 102 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCceEE-EE-CCCCcccceeec----CCCeEEEEcc-c-cEEEeccCCceeEEec
Confidence 4556655 44555567788888887664322 22 223334444333 2234444443 3 4556654443211111
Q ss_pred ccCccccccccCCCCCceEEEEECCCCcEEEEEeC---------CCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCC
Q psy9598 604 FHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSG---------DHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHS 674 (1915)
Q Consensus 604 ~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~---------Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspd 674 (1915)
.. .. .......+.+.+.|+|.+-++... -..-.||-++. ....+..+..|-..-++|+|||+
T Consensus 103 ~~--~~-----~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p--~g~~~~l~~~~~~~~NGla~SpD 173 (307)
T COG3386 103 EP--ED-----GLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP--DGGVVRLLDDDLTIPNGLAFSPD 173 (307)
T ss_pred cc--cC-----CCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC--CCCEEEeecCcEEecCceEECCC
Confidence 00 00 001134566778888876555433 01124555531 12233334455556678999999
Q ss_pred CCEEEEEeCC-CcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCC-eEEEEECC
Q psy9598 675 HLRFVSGSRD-GTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNF-QIKIWDAF 752 (1915)
Q Consensus 675 g~~L~sgs~D-G~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg-~I~vwD~~ 752 (1915)
++.|+.+... +.|.-|++..... ...............+..-.++.+.+|.+.+++.. +| .|.+|+..
T Consensus 174 g~tly~aDT~~~~i~r~~~d~~~g---------~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~-~g~~v~~~~pd 243 (307)
T COG3386 174 GKTLYVADTPANRIHRYDLDPATG---------PIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVW-GGGRVVRFNPD 243 (307)
T ss_pred CCEEEEEeCCCCeEEEEecCcccC---------ccCCcceEEEccCCCCCCCceEEeCCCCEEEeccc-CCceEEEECCC
Confidence 9877776544 7777776653110 00000001111112344455778888888866555 44 89999988
Q ss_pred CCceEEEeeCCCCCeEEEEEccCCCCEEEEE
Q psy9598 753 NGDLVQVLKGHTNEVFVLESHPFDSRVLLSA 783 (1915)
Q Consensus 753 tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSg 783 (1915)
|+++..+..+...+++++|--.+.+.|+..
T Consensus 244 -G~l~~~i~lP~~~~t~~~FgG~~~~~L~iT 273 (307)
T COG3386 244 -GKLLGEIKLPVKRPTNPAFGGPDLNTLYIT 273 (307)
T ss_pred -CcEEEEEECCCCCCccceEeCCCcCEEEEE
Confidence 999999988777788888865344444333
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.27 Score=49.43 Aligned_cols=105 Identities=16% Similarity=0.155 Sum_probs=69.2
Q ss_pred CeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCe
Q psy9598 562 IITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHH 641 (1915)
Q Consensus 562 ~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~ 641 (1915)
.|++++++.....+.+.|++||.|..|++|+-..- +..+. ....|++++-... ..++.|..+|+
T Consensus 1 ~V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e~--~~Ei~-------------e~~~v~~L~~~~~-~~F~Y~l~NGT 64 (111)
T PF14783_consen 1 NVTALCLFDFDGDGENELLVGSDDFEIRVFKGDEI--VAEIT-------------ETDKVTSLCSLGG-GRFAYALANGT 64 (111)
T ss_pred CeeEEEEEecCCCCcceEEEecCCcEEEEEeCCcE--EEEEe-------------cccceEEEEEcCC-CEEEEEecCCE
Confidence 37888888765445689999999999999974321 11221 1266777777766 46888999999
Q ss_pred EEEEEecCCCCCceeEEeccCCCCeeEEEEc-CCC---CEEEEEeCCCcEE
Q psy9598 642 VRVYKMDGVDSPLGILEVEEHSDKVDSIQWS-HSH---LRFVSGSRDGTAL 688 (1915)
Q Consensus 642 I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fs-pdg---~~L~sgs~DG~I~ 688 (1915)
|-+|+-. ..+....... .+.++++. .++ ..|++|-.+|.|-
T Consensus 65 VGvY~~~-----~RlWRiKSK~-~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 65 VGVYDRS-----QRLWRIKSKN-QVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred EEEEeCc-----ceeeeeccCC-CeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 9999751 2233333333 35666543 332 2688998888764
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=95.80 E-value=2.8 Score=51.81 Aligned_cols=79 Identities=18% Similarity=0.124 Sum_probs=46.7
Q ss_pred EEEeeCCCCCeEEEEEcc------CCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEE
Q psy9598 757 VQVLKGHTNEVFVLESHP------FDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCA 830 (1915)
Q Consensus 757 i~~l~gH~~~V~sl~~sp------~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~La 830 (1915)
+..+..| ..+..+.|.. ..+.+|++.-..+.|....+..+.. +.....++ ......+.++++.|||.+++
T Consensus 246 ~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~-~~~~~r~~~v~~~pDG~Lyv 321 (331)
T PF07995_consen 246 VFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGS--VTEEEEFL-GGFGGRPRDVAQGPDGALYV 321 (331)
T ss_dssp SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEE--EEEEEEEC-TTSSS-EEEEEEETTSEEEE
T ss_pred ceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCC--ccceEEcc-ccCCCCceEEEEcCCCeEEE
Confidence 3444444 4466666653 1345666655567787777764433 22222222 33345799999999999999
Q ss_pred EEeCCCeEE
Q psy9598 831 LTDSYGHLL 839 (1915)
Q Consensus 831 sg~~dG~I~ 839 (1915)
+.+.+|.|+
T Consensus 322 ~~d~~G~iy 330 (331)
T PF07995_consen 322 SDDSDGKIY 330 (331)
T ss_dssp EE-TTTTEE
T ss_pred EECCCCeEe
Confidence 999888875
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=95.75 E-value=1.7 Score=51.23 Aligned_cols=219 Identities=16% Similarity=0.154 Sum_probs=126.3
Q ss_pred CcEEEEEEcCCCCEEEEEECCCcEEEEECC------CC-cEEEEEeC-----CCCCEEEEEEeCCCCE------------
Q psy9598 477 SAVFCVLFDKLGEVIVTGADDLLIKLWRAR------DG-KLLATLRG-----CSGEISDIAIDNRNIL------------ 532 (1915)
Q Consensus 477 ~~V~~vafspdg~~LaTGs~Dg~I~IWd~~------tg-~~~~~l~g-----H~~~I~~Lafspdg~~------------ 532 (1915)
-.-+.|+|+|.+.+-++....+...+||.. .. .++-++.+ ..+..+.+.|+....+
T Consensus 23 ~N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~ 102 (336)
T TIGR03118 23 RNAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSR 102 (336)
T ss_pred cccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCccccee
Confidence 345789999999988888888999999986 12 23444442 2346788888754333
Q ss_pred EEEEeCCCcEEEEECCCCce-----EEEee-cCCCCe-EEEEeccCccCCCcEEEEE-eCCCeEEEEecccCccccceec
Q psy9598 533 LAAGTVDKTIRIWNLQTLAP-----ISVLV-GHQGII-TGVNFCPLEVNGFNYLAST-STDGCIGFWKYKLDIDISKTVF 604 (1915)
Q Consensus 533 LaSgs~DgtIrVWDl~tg~~-----~~~l~-~h~~~V-~sl~fsp~~~~d~~~L~sg-s~DgtI~iWDl~~~~~~~~~~~ 604 (1915)
++.++.||+|.-|...-+.. ...+. +..+.| ..+++.... .+.+|+.+ -..+.|-+||-.-......-.+
T Consensus 103 Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~--~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F 180 (336)
T TIGR03118 103 FLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTG--GGDYLYAANFRQGRIDVFKGSFRPPPLPGSF 180 (336)
T ss_pred EEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecC--CCceEEEeccCCCceEEecCccccccCCCCc
Confidence 56678899999998643222 12222 112333 356666432 23444444 4678999998544322111111
Q ss_pred cCcc------ccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcC-----
Q psy9598 605 HEPV------MFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSH----- 673 (1915)
Q Consensus 605 ~~~~------~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fsp----- 673 (1915)
..+. .+........-.|+-..-.+++..=+.|..-|.|-+||+.+. ......-.+.-..-+.|+..|
T Consensus 181 ~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~--l~~r~as~g~LNaPWG~a~APa~FG~ 258 (336)
T TIGR03118 181 IDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQ--LLRRVASSGRLNAPWGLAIAPESFGS 258 (336)
T ss_pred cCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCCc--EEEEeccCCcccCCceeeeChhhhCC
Confidence 1110 001111112222333333444444555666789999998431 111112234445567777755
Q ss_pred -CCCEEEEEeCCCcEEEEEccCCceEE
Q psy9598 674 -SHLRFVSGSRDGTALIWYYKCSQWRF 699 (1915)
Q Consensus 674 -dg~~L~sgs~DG~I~IWDl~~~~~~~ 699 (1915)
.|.+|+---.||+|..||..++.++-
T Consensus 259 ~sg~lLVGNFGDG~InaFD~~sG~~~g 285 (336)
T TIGR03118 259 LSGALLVGNFGDGTINAYDPQSGAQLG 285 (336)
T ss_pred CCCCeEEeecCCceeEEecCCCCceee
Confidence 46788888899999999998887554
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=95.69 E-value=11 Score=51.58 Aligned_cols=113 Identities=7% Similarity=-0.049 Sum_probs=67.4
Q ss_pred CcEEEEEEcCCCCEEEEEECC-----CcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCC------CcEEEE
Q psy9598 477 SAVFCVLFDKLGEVIVTGADD-----LLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVD------KTIRIW 545 (1915)
Q Consensus 477 ~~V~~vafspdg~~LaTGs~D-----g~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~D------gtIrVW 545 (1915)
-.+..+.+||+|++|+.+.+. ..|+|-|+.+|..+...-.... ..++|++|+..|+.+..+ ..|.+|
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h 204 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRH 204 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence 456678899999999876443 3688999998864432221222 569999998866655432 368888
Q ss_pred ECCCC--ceEEEeecCCCCeEEEEeccCccCCCcEEEEEeC---CCeEEEEecc
Q psy9598 546 NLQTL--APISVLVGHQGIITGVNFCPLEVNGFNYLASTST---DGCIGFWKYK 594 (1915)
Q Consensus 546 Dl~tg--~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~---DgtI~iWDl~ 594 (1915)
++.++ .-...+........-..+.+ .++.+++..+. ++.+.+|+..
T Consensus 205 ~lgt~~~~d~lv~~e~~~~~~~~~~~s---~d~~~l~i~~~~~~~~~~~l~~~~ 255 (686)
T PRK10115 205 TIGTPASQDELVYEEKDDTFYVSLHKT---TSKHYVVIHLASATTSEVLLLDAE 255 (686)
T ss_pred ECCCChhHCeEEEeeCCCCEEEEEEEc---CCCCEEEEEEECCccccEEEEECc
Confidence 88887 33444443333333222222 13344444433 3467788753
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=95.62 E-value=1 Score=55.62 Aligned_cols=200 Identities=12% Similarity=0.015 Sum_probs=96.5
Q ss_pred EEEcCCCCEEEEEEC------CCcEEEEECCCCcEEEEEeCC---CCCEEEEEEeCCCCEEEEEeC--------------
Q psy9598 482 VLFDKLGEVIVTGAD------DLLIKLWRARDGKLLATLRGC---SGEISDIAIDNRNILLAAGTV-------------- 538 (1915)
Q Consensus 482 vafspdg~~LaTGs~------Dg~I~IWd~~tg~~~~~l~gH---~~~I~~Lafspdg~~LaSgs~-------------- 538 (1915)
+-.-|+|.+++|+-. -|-+.+.|-.+.......... ..--.++.|.|..+.++|...
T Consensus 135 ~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d 214 (461)
T PF05694_consen 135 VHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPED 214 (461)
T ss_dssp EEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTT
T ss_pred eeecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhH
Confidence 334478988888632 257889998888888777532 233567888898888888643
Q ss_pred ------CCcEEEEECCCCceEEEeecCC--CCeEEEEeccCccCCCcEEEEEeCCCeEEEEec-ccCccccceeccCccc
Q psy9598 539 ------DKTIRIWNLQTLAPISVLVGHQ--GIITGVNFCPLEVNGFNYLASTSTDGCIGFWKY-KLDIDISKTVFHEPVM 609 (1915)
Q Consensus 539 ------DgtIrVWDl~tg~~~~~l~~h~--~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl-~~~~~~~~~~~~~~~~ 609 (1915)
..++.|||+.+.+.++++.--. ..+..|.|..+. ....-++.+.-.++|..|-- ..+..........+..
T Consensus 215 ~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P-~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~ 293 (461)
T PF05694_consen 215 LEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDP-DANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAK 293 (461)
T ss_dssp HHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SST-T--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--E
T ss_pred hhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCC-CccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCc
Confidence 3589999999999999886432 245678887643 22233444444555544432 3332211111111111
Q ss_pred ---------cccccCCCCCceEEEEECCCCcEEEEEe-CCCeEEEEEecCCCCCceeEEecc----------------CC
Q psy9598 610 ---------FNERIRPGNAHILCSSFSPGGLFLATGS-GDHHVRVYKMDGVDSPLGILEVEE----------------HS 663 (1915)
Q Consensus 610 ---------~~~~~~~~~~~V~~l~fspdg~~Lasgs-~Dg~I~IwDl~~~~~~~~i~~l~~----------------h~ 663 (1915)
....+..-..-|+.|.+|.|.++|.+.+ ..|.|+.||+.....+..+..+.- -.
T Consensus 294 ~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~ 373 (461)
T PF05694_consen 294 KVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLR 373 (461)
T ss_dssp E--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------
T ss_pred ccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccC
Confidence 0111111235588999999999887765 489999999976666655544321 11
Q ss_pred CCeeEEEEcCCCCEEEEEe
Q psy9598 664 DKVDSIQWSHSHLRFVSGS 682 (1915)
Q Consensus 664 ~~V~sl~fspdg~~L~sgs 682 (1915)
+...-|++|-||++|+..+
T Consensus 374 GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 374 GGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp S----EEE-TTSSEEEEE-
T ss_pred CCCCeEEEccCCeEEEEEe
Confidence 2235566777777766553
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=95.50 E-value=2.2 Score=53.61 Aligned_cols=72 Identities=18% Similarity=0.312 Sum_probs=47.6
Q ss_pred EEEEeCCCCEEEEEeCCCcEEE---EECCC-C----ceEEEeec---CC--CCeEEEEeccCcc-------CCCcEEEEE
Q psy9598 523 DIAIDNRNILLAAGTVDKTIRI---WNLQT-L----APISVLVG---HQ--GIITGVNFCPLEV-------NGFNYLAST 582 (1915)
Q Consensus 523 ~Lafspdg~~LaSgs~DgtIrV---WDl~t-g----~~~~~l~~---h~--~~V~sl~fsp~~~-------~d~~~L~sg 582 (1915)
+++.+|++.+||.|..+..|.+ |+... + .......+ +. ..|+++.|.|... .+...++.|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 4677899999999877776655 64411 1 11222211 21 4788888877621 145789999
Q ss_pred eCCCeEEEEecc
Q psy9598 583 STDGCIGFWKYK 594 (1915)
Q Consensus 583 s~DgtI~iWDl~ 594 (1915)
..+|.|+||...
T Consensus 86 ~ssG~vrfyte~ 97 (415)
T PF14655_consen 86 TSSGYVRFYTEN 97 (415)
T ss_pred ecccEEEEEecc
Confidence 999999999864
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.7 Score=61.19 Aligned_cols=194 Identities=12% Similarity=0.046 Sum_probs=105.0
Q ss_pred CCCCcEEEEEEcCCCCEEEEEE------CCC--cEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCC------
Q psy9598 474 GHLSAVFCVLFDKLGEVIVTGA------DDL--LIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVD------ 539 (1915)
Q Consensus 474 gH~~~V~~vafspdg~~LaTGs------~Dg--~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~D------ 539 (1915)
|....+...+++|+|..+|... .|+ .|.+++. .+.....+.+. ..++-.|+|+|..|++.+..
T Consensus 347 g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v 423 (591)
T PRK13616 347 GQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRV 423 (591)
T ss_pred ccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcceeeecCC--CCCCceECCCCCceEEEecCcceEEE
Confidence 4445788999999999988765 244 4555554 33332223333 37889999998877776532
Q ss_pred ------CcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEE---ecccCccccceeccCcccc
Q psy9598 540 ------KTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFW---KYKLDIDISKTVFHEPVMF 610 (1915)
Q Consensus 540 ------gtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iW---Dl~~~~~~~~~~~~~~~~~ 610 (1915)
+.|.+.++..+.... ...+.|..+.|+|++ ..|+... +|.|.+- ....+. ..+..+...
T Consensus 424 ~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG----~RiA~i~-~g~v~Va~Vvr~~~G~----~~l~~~~~l 491 (591)
T PRK13616 424 IRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDG----VRAAMII-GGKVYLAVVEQTEDGQ----YALTNPREV 491 (591)
T ss_pred eccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCC----CEEEEEE-CCEEEEEEEEeCCCCc----eeecccEEe
Confidence 222222333332222 234679999999954 6665554 4666662 222221 111111111
Q ss_pred ccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEE
Q psy9598 611 NERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTAL 688 (1915)
Q Consensus 611 ~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~ 688 (1915)
.. .-...+..+.|..++.++ ++..++...+|.+.-.........-......+.+|+-+++ .++.+..+|.+.
T Consensus 492 ~~---~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~ 563 (591)
T PRK13616 492 GP---GLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARAVLQ 563 (591)
T ss_pred ec---ccCCccccceEecCCEEE-EEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCCceEE
Confidence 11 112335788999999854 5555555556655322211111111123566777776653 466666666433
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.39 Score=63.65 Aligned_cols=194 Identities=9% Similarity=-0.041 Sum_probs=98.5
Q ss_pred CCCEEEEEECC------CcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCC-----cEEEEECCCCce--E
Q psy9598 487 LGEVIVTGADD------LLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDK-----TIRIWNLQTLAP--I 553 (1915)
Q Consensus 487 dg~~LaTGs~D------g~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~Dg-----tIrVWDl~tg~~--~ 553 (1915)
++.+++.||.+ ..|..||..+......-.-....-......-+|.+.+.||.++ +|.+||..+..- +
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~ 382 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKML 382 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEEC
Confidence 46777777754 3477888777643221110111111112233577778887654 478899876432 1
Q ss_pred EEeecCCCCeEEEEeccCccCCCcEEEEEeCCC-----------------------eEEEEecccCccccceeccCcccc
Q psy9598 554 SVLVGHQGIITGVNFCPLEVNGFNYLASTSTDG-----------------------CIGFWKYKLDIDISKTVFHEPVMF 610 (1915)
Q Consensus 554 ~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~Dg-----------------------tI~iWDl~~~~~~~~~~~~~~~~~ 610 (1915)
..+.........+++ ++.+.+.|+.++ +|..||..+..........
T Consensus 383 ~~mp~~r~~~~~~~~------~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~----- 451 (557)
T PHA02713 383 PDMPIALSSYGMCVL------DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFW----- 451 (557)
T ss_pred CCCCcccccccEEEE------CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCC-----
Confidence 111111111112222 346777777553 3556666655321111000
Q ss_pred ccccCCCCCceEEEEECCCCcEEEEEeCCC------eEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCC
Q psy9598 611 NERIRPGNAHILCSSFSPGGLFLATGSGDH------HVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRD 684 (1915)
Q Consensus 611 ~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg------~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~D 684 (1915)
. .........-+|...++||.++ .|..||.........+..+.........+.+ +|...++|+.+
T Consensus 452 -----~--~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~ 522 (557)
T PHA02713 452 -----T--GTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYE 522 (557)
T ss_pred -----c--ccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeec
Confidence 0 0111111223566667776542 4667887431234444444333333333333 67888999988
Q ss_pred C--cEEEEEccCCceEEe
Q psy9598 685 G--TALIWYYKCSQWRFI 700 (1915)
Q Consensus 685 G--~I~IWDl~~~~~~~~ 700 (1915)
| ++-.||..+.+|...
T Consensus 523 ~~~~~e~yd~~~~~W~~~ 540 (557)
T PHA02713 523 SYMLQDTFNVYTYEWNHI 540 (557)
T ss_pred ceeehhhcCcccccccch
Confidence 8 788899999888653
|
|
| >KOG2444|consensus | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.023 Score=63.44 Aligned_cols=142 Identities=16% Similarity=0.120 Sum_probs=75.5
Q ss_pred EEEEEeCCCcEEEEECCCCceEE-EeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCcccc
Q psy9598 532 LLAAGTVDKTIRIWNLQTLAPIS-VLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMF 610 (1915)
Q Consensus 532 ~LaSgs~DgtIrVWDl~tg~~~~-~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~ 610 (1915)
.|..-+.||.|+-+++...+... .-.-|... ..+ + .....|++|+.+|.|.+|.+..........
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~-~~v---~---~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~------- 97 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKESCRSERFIDEG-QRV---V---TASAKLMVGTSDGAVYVFNWNLEGAHSDRV------- 97 (238)
T ss_pred hhccccCCcccccchhhhhhhhhhhhhhhhcc-eee---c---ccCceEEeecccceEEEecCCccchHHHhh-------
Confidence 34445668888877765322111 00011111 111 1 133689999999999999876322111111
Q ss_pred ccccCCCCCceEEE-EECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCC-CCeeEEEEcCCCCEEEEE--eCCCc
Q psy9598 611 NERIRPGNAHILCS-SFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHS-DKVDSIQWSHSHLRFVSG--SRDGT 686 (1915)
Q Consensus 611 ~~~~~~~~~~V~~l-~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~-~~V~sl~fspdg~~L~sg--s~DG~ 686 (1915)
......|.|+ ....++.+..+++.+|.|+.|++. ....+.....|+ .++..+..+..+..++++ |.|..
T Consensus 98 ----~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~---p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~ 170 (238)
T KOG2444|consen 98 ----CSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIK---PNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRV 170 (238)
T ss_pred ----hcccccceeccccccccceeEEeccCCceeeeccc---cCceeeeeccccCCCcceeEEecCCceEEeeccccchh
Confidence 1111223332 223355688899999999999983 223333334455 344444455555555555 66666
Q ss_pred EEEEEccC
Q psy9598 687 ALIWYYKC 694 (1915)
Q Consensus 687 I~IWDl~~ 694 (1915)
++.|++..
T Consensus 171 ~k~W~ve~ 178 (238)
T KOG2444|consen 171 LKKWNVEK 178 (238)
T ss_pred hhhcchhh
Confidence 66666543
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.33 E-value=1.7 Score=50.83 Aligned_cols=186 Identities=11% Similarity=0.101 Sum_probs=119.2
Q ss_pred EecccCCceeeeEEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCC-CCCEEEEEEeCCCCEEEEE
Q psy9598 458 ISSHKYSNLRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGC-SGEISDIAIDNRNILLAAG 536 (1915)
Q Consensus 458 i~~~~~~~~~~~~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH-~~~I~~Lafspdg~~LaSg 536 (1915)
+|...|.-......+.|-...|.++.|+|+.+.|++......-.||=..+|.++.++.-. -+..-.|.+..+|++.++-
T Consensus 67 ~~l~~y~~~i~akpi~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~d 146 (316)
T COG3204 67 RYLLEYRARIDAKPILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVD 146 (316)
T ss_pred hccCCceEEEeccccccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEe
Confidence 333334333333345676777999999999999999999888899988899999887421 1233567888888888888
Q ss_pred eCCCcEEEEECCCCceEEE-------ee--cC-CCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccC
Q psy9598 537 TVDKTIRIWNLQTLAPISV-------LV--GH-QGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHE 606 (1915)
Q Consensus 537 s~DgtIrVWDl~tg~~~~~-------l~--~h-~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~ 606 (1915)
=.++.+.++.+.....+.. +. .+ ....-.++|.|.. ..|+.+-.-.-+.||.+...... +..+.
T Consensus 147 ER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~----~~l~~aKEr~P~~I~~~~~~~~~--l~~~~ 220 (316)
T COG3204 147 ERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVD----HRLFVAKERNPIGIFEVTQSPSS--LSVHA 220 (316)
T ss_pred hhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCC----ceEEEEEccCCcEEEEEecCCcc--ccccc
Confidence 7888888888765432211 11 12 4567899999944 77777777777788776643211 11110
Q ss_pred ccccccccCCCCCceEEEEECCC-CcEEEEEeCCCeEEEEEecC
Q psy9598 607 PVMFNERIRPGNAHILCSSFSPG-GLFLATGSGDHHVRVYKMDG 649 (1915)
Q Consensus 607 ~~~~~~~~~~~~~~V~~l~fspd-g~~Lasgs~Dg~I~IwDl~~ 649 (1915)
.........-.-..|.++.|++. +.+|+-+..++.|.-.|..+
T Consensus 221 ~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G 264 (316)
T COG3204 221 SLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSG 264 (316)
T ss_pred ccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCC
Confidence 00000000000134677888874 56677777788888888743
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=95.20 E-value=1.6 Score=57.77 Aligned_cols=165 Identities=18% Similarity=0.197 Sum_probs=87.9
Q ss_pred CCCCCEEEEEEeCCCCEEEEEe------CCC--cEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCC-C
Q psy9598 516 GCSGEISDIAIDNRNILLAAGT------VDK--TIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTD-G 586 (1915)
Q Consensus 516 gH~~~I~~Lafspdg~~LaSgs------~Dg--tIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~D-g 586 (1915)
+....+.+.+++++|..+|... .|+ .|.+++. .+.....+.+. ..+.-.|+|++ ..|++.+.. .
T Consensus 347 g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~~~lt~g~--~~t~PsWspDG----~~lw~v~dg~~ 419 (591)
T PRK13616 347 GQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVAVQVLEGH--SLTRPSWSLDA----DAVWVVVDGNT 419 (591)
T ss_pred ccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcceeeecCC--CCCCceECCCC----CceEEEecCcc
Confidence 3334678999999999887665 244 4555554 23333333332 37888999953 566665433 2
Q ss_pred eEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCC-cee---EEe-cc
Q psy9598 587 CIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSP-LGI---LEV-EE 661 (1915)
Q Consensus 587 tI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~-~~i---~~l-~~ 661 (1915)
.+++.+-.....+......... ... ...+.|..+.|||||..|+... +|.|.|--+...... ..+ ..+ .+
T Consensus 420 ~~~v~~~~~~gql~~~~vd~ge-~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~ 494 (591)
T PRK13616 420 VVRVIRDPATGQLARTPVDASA-VAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPG 494 (591)
T ss_pred eEEEeccCCCceEEEEeccCch-hhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecc
Confidence 2222222111111111111000 000 1235699999999999888765 477777433221111 111 112 22
Q ss_pred CCCCeeEEEEcCCCCEEEEEeCCCcEEEEEcc
Q psy9598 662 HSDKVDSIQWSHSHLRFVSGSRDGTALIWYYK 693 (1915)
Q Consensus 662 h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~ 693 (1915)
....+.++.|..++.+ +++..++...+|.+.
T Consensus 495 l~~~~~~l~W~~~~~L-~V~~~~~~~~v~~v~ 525 (591)
T PRK13616 495 LGDTAVSLDWRTGDSL-VVGRSDPEHPVWYVN 525 (591)
T ss_pred cCCccccceEecCCEE-EEEecCCCCceEEEe
Confidence 3344688999998885 455666666667543
|
|
| >KOG2395|consensus | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.58 Score=57.95 Aligned_cols=141 Identities=12% Similarity=0.099 Sum_probs=91.2
Q ss_pred EEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCc-------EEEEEeCCCeEEEEEecCC
Q psy9598 578 YLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGL-------FLATGSGDHHVRVYKMDGV 650 (1915)
Q Consensus 578 ~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~-------~Lasgs~Dg~I~IwDl~~~ 650 (1915)
+|.++..-..|.-.|+..|..+....++ ..|.-+.+.|++. .-++|-.+..|.-||.+-.
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~-------------~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~ 414 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFE-------------DDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQ 414 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeecc-------------CCcceeeccCCcchhcccccccEEeecCCceEEeccccc
Confidence 3444555566777788888766555554 2255556666543 2356778889999998632
Q ss_pred CCCceeEEeccC----CCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEE
Q psy9598 651 DSPLGILEVEEH----SDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTM 726 (1915)
Q Consensus 651 ~~~~~i~~l~~h----~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~ 726 (1915)
.. ..+....+| .....|++-..+| ++|+||.+|.|++||- .+. .......+....|..
T Consensus 415 ~~-~kl~~~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~---------------~AKTAlPgLG~~I~h 476 (644)
T KOG2395|consen 415 GK-NKLAVVQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGR---------------RAKTALPGLGDAIKH 476 (644)
T ss_pred Cc-ceeeeeeccccccccccceeeecCCc-eEEEeecCCcEEeehh-hhh---------------hhhhcccccCCceee
Confidence 22 123333333 2345666655555 8999999999999985 222 112234456788999
Q ss_pred EEECCCCCEEEEEEecCCeEEEEEC
Q psy9598 727 VAWDASDRWVITAINFNFQIKIWDA 751 (1915)
Q Consensus 727 va~spdg~~L~t~s~~Dg~I~vwD~ 751 (1915)
|..+.+|.+|+++| +..+.+.++
T Consensus 477 VdvtadGKwil~Tc--~tyLlLi~t 499 (644)
T KOG2395|consen 477 VDVTADGKWILATC--KTYLLLIDT 499 (644)
T ss_pred EEeeccCcEEEEec--ccEEEEEEE
Confidence 99999999999887 566766664
|
|
| >KOG2395|consensus | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.46 Score=58.77 Aligned_cols=149 Identities=11% Similarity=0.096 Sum_probs=97.9
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccC---CCcEEEEEeCCCeEEEEecccCccccceeccCcc
Q psy9598 532 LLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVN---GFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPV 608 (1915)
Q Consensus 532 ~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~---d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~ 608 (1915)
+|.++..-..|+-.|+..|+.+....-|.. |+-+.+.|+... ....-+.|-.|..|+-||.+-... ..+......
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~-~kl~~~q~k 425 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGK-NKLAVVQSK 425 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCc-ceeeeeecc
Confidence 344555566788899999999998887766 777888875411 011223455677889999874321 111111111
Q ss_pred ccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEE
Q psy9598 609 MFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTAL 688 (1915)
Q Consensus 609 ~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~ 688 (1915)
.+ .......|++-..+| +||+|+.+|.|++||--+ ...-..+.+...+|..|..+.+|.+|++.+ +.++.
T Consensus 426 qy-----~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~---~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLl 495 (644)
T KOG2395|consen 426 QY-----STKNNFSCFATTESG-YIVVGSLKGDIRLYDRIG---RRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLL 495 (644)
T ss_pred cc-----ccccccceeeecCCc-eEEEeecCCcEEeehhhh---hhhhhcccccCCceeeEEeeccCcEEEEec-ccEEE
Confidence 11 223556777777777 799999999999999622 122234678889999999999999877655 45565
Q ss_pred EEEc
Q psy9598 689 IWYY 692 (1915)
Q Consensus 689 IWDl 692 (1915)
+-++
T Consensus 496 Li~t 499 (644)
T KOG2395|consen 496 LIDT 499 (644)
T ss_pred EEEE
Confidence 5554
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.10 E-value=2.3 Score=51.59 Aligned_cols=103 Identities=13% Similarity=0.040 Sum_probs=64.4
Q ss_pred ccEEEEEECCCCCEEEEEEecCCeEEEEECCC--C----ce-EEEeeCCCCCeEEEEEccCCCCEEEEEecCc-eEEEEE
Q psy9598 722 IKVTMVAWDASDRWVITAINFNFQIKIWDAFN--G----DL-VQVLKGHTNEVFVLESHPFDSRVLLSAGHDG-LIIIWD 793 (1915)
Q Consensus 722 ~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~t--g----~~-i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG-~I~IWd 793 (1915)
..-+.|+||||++.++.+.+..+.|+.|++.. + .. ...+..+.+..-.++... +|.+.+++...| .|.+|+
T Consensus 163 ~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDa-dG~lw~~a~~~g~~v~~~~ 241 (307)
T COG3386 163 TIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDA-DGNLWVAAVWGGGRVVRFN 241 (307)
T ss_pred EecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeC-CCCEEEecccCCceEEEEC
Confidence 34567999999999999988678898888752 2 11 112222344455566666 777776555554 899999
Q ss_pred CCCCccccceeeeeeecCCCCcceEEEEE-cCCCCEEEEEe
Q psy9598 794 ILSSKQRGYKWFHNIVEGQGEGALFDGKW-SPDGTTCALTD 833 (1915)
Q Consensus 794 l~s~~~~~~~~~~~~~~~~~~~~V~~vaf-Spdg~~Lasg~ 833 (1915)
.. ++. +..+. -....+++++| .++.+.|.+++
T Consensus 242 pd-G~l--~~~i~-----lP~~~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 242 PD-GKL--LGEIK-----LPVKRPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred CC-CcE--EEEEE-----CCCCCCccceEeCCCcCEEEEEe
Confidence 88 766 44443 11245667777 34555554443
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.02 E-value=1.1 Score=59.49 Aligned_cols=226 Identities=9% Similarity=0.077 Sum_probs=106.1
Q ss_pred cEEEEECCCCcEEE--EEeCCCCCEEEEEEeCCCCEEEEEeCC------CcEEEEECCCCceE--EEeecCCCCeEEEEe
Q psy9598 499 LIKLWRARDGKLLA--TLRGCSGEISDIAIDNRNILLAAGTVD------KTIRIWNLQTLAPI--SVLVGHQGIITGVNF 568 (1915)
Q Consensus 499 ~I~IWd~~tg~~~~--~l~gH~~~I~~Lafspdg~~LaSgs~D------gtIrVWDl~tg~~~--~~l~~h~~~V~sl~f 568 (1915)
.+..||..++.... .+...... .+++. -++.+++.||.+ ..+..||..+..-. ..+....... +++.
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~-~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~-~~~~ 349 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIIN-YASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRF-SLAV 349 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccc-eEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhce-eEEE
Confidence 56677877664322 22111111 12222 356677777753 34677887665321 1111111111 2222
Q ss_pred ccCccCCCcEEEEEeCCC-----eEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCC---
Q psy9598 569 CPLEVNGFNYLASTSTDG-----CIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDH--- 640 (1915)
Q Consensus 569 sp~~~~d~~~L~sgs~Dg-----tI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg--- 640 (1915)
. ++.+.+.||.++ ++..||..+.......... . .. .....++ -+|...+.||.++
T Consensus 350 ~-----~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp--~----~r----~~~~~~~--~~g~IYviGG~~~~~~ 412 (557)
T PHA02713 350 I-----DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMP--I----AL----SSYGMCV--LDQYIYIIGGRTEHID 412 (557)
T ss_pred E-----CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCC--c----cc----ccccEEE--ECCEEEEEeCCCcccc
Confidence 2 346777777654 4778887765321111111 0 00 1111122 2677777777653
Q ss_pred --------------------eEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCC------cEEEEEccC
Q psy9598 641 --------------------HVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDG------TALIWYYKC 694 (1915)
Q Consensus 641 --------------------~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG------~I~IWDl~~ 694 (1915)
.|..||... .....+..+....... +++ .-+|...+.|+.++ .+..||..+
T Consensus 413 ~~~~~~~~~~~~~~~~~~~~~ve~YDP~t-d~W~~v~~m~~~r~~~-~~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~ 489 (557)
T PHA02713 413 YTSVHHMNSIDMEEDTHSSNKVIRYDTVN-NIWETLPNFWTGTIRP-GVV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNT 489 (557)
T ss_pred cccccccccccccccccccceEEEECCCC-CeEeecCCCCcccccC-cEE-EECCEEEEEeCCCCCCccceeEEEecCCC
Confidence 366677632 2222222111111111 122 23566777777542 467899988
Q ss_pred -CceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCC--eEEEEECCCCceEEEeeCCC
Q psy9598 695 -SQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNF--QIKIWDAFNGDLVQVLKGHT 764 (1915)
Q Consensus 695 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg--~I~vwD~~tg~~i~~l~gH~ 764 (1915)
.+|..... + + ........+++ +|...++||. +| .+-.||..+.+-...-..|.
T Consensus 490 ~~~W~~~~~-m----~---------~~r~~~~~~~~--~~~iyv~Gg~-~~~~~~e~yd~~~~~W~~~~~~~~ 545 (557)
T PHA02713 490 YNGWELITT-T----E---------SRLSALHTILH--DNTIMMLHCY-ESYMLQDTFNVYTYEWNHICHQHS 545 (557)
T ss_pred CCCeeEccc-c----C---------cccccceeEEE--CCEEEEEeee-cceeehhhcCcccccccchhhhcC
Confidence 68865321 1 0 01112222332 5566666665 66 67778877766554444444
|
|
| >KOG4499|consensus | Back alignment and domain information |
|---|
Probab=95.01 E-value=2.6 Score=47.40 Aligned_cols=148 Identities=9% Similarity=0.098 Sum_probs=85.5
Q ss_pred CceEEEEECCCCcEEEEEeC----------CCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEE-EEEeCCCcE
Q psy9598 619 AHILCSSFSPGGLFLATGSG----------DHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRF-VSGSRDGTA 687 (1915)
Q Consensus 619 ~~V~~l~fspdg~~Lasgs~----------Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L-~sgs~DG~I 687 (1915)
...+....+|+|+++ .|.. .|.++.|-.. .. +..+...-+--+.|+|+.+...| ++-+.+-.|
T Consensus 109 nR~NDgkvdP~Gryy-~GtMad~~~~le~~~g~Ly~~~~~--h~---v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V 182 (310)
T KOG4499|consen 109 NRLNDGKVDPDGRYY-GGTMADFGDDLEPIGGELYSWLAG--HQ---VELIWNCVGISNGLAWDSDAKKFYYIDSLNYEV 182 (310)
T ss_pred cccccCccCCCCcee-eeeeccccccccccccEEEEeccC--CC---ceeeehhccCCccccccccCcEEEEEccCceEE
Confidence 445566778999874 3322 2445555441 11 11111222334567888776655 455677778
Q ss_pred EEEE--ccCCceEEe--eecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCC
Q psy9598 688 LIWY--YKCSQWRFI--RLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGH 763 (1915)
Q Consensus 688 ~IWD--l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH 763 (1915)
.-|| +.++..... ..++.... .. ....--.++++..|.+.+++-+ .++|...|..+|+.+..+.-.
T Consensus 183 ~a~dyd~~tG~~snr~~i~dlrk~~----~~-----e~~~PDGm~ID~eG~L~Va~~n-g~~V~~~dp~tGK~L~eiklP 252 (310)
T KOG4499|consen 183 DAYDYDCPTGDLSNRKVIFDLRKSQ----PF-----ESLEPDGMTIDTEGNLYVATFN-GGTVQKVDPTTGKILLEIKLP 252 (310)
T ss_pred eeeecCCCcccccCcceeEEeccCC----Cc-----CCCCCCcceEccCCcEEEEEec-CcEEEEECCCCCcEEEEEEcC
Confidence 7788 555542110 01111000 00 0111122445667777777776 899999999999999999988
Q ss_pred CCCeEEEEEccCCCCEEEE
Q psy9598 764 TNEVFVLESHPFDSRVLLS 782 (1915)
Q Consensus 764 ~~~V~sl~~sp~dg~~LaS 782 (1915)
...|+++||-..+-.+|++
T Consensus 253 t~qitsccFgGkn~d~~yv 271 (310)
T KOG4499|consen 253 TPQITSCCFGGKNLDILYV 271 (310)
T ss_pred CCceEEEEecCCCccEEEE
Confidence 9999999997533344443
|
|
| >KOG4441|consensus | Back alignment and domain information |
|---|
Probab=94.95 E-value=1.7 Score=57.54 Aligned_cols=224 Identities=14% Similarity=0.102 Sum_probs=112.9
Q ss_pred CeEEEecccCCceeeeEEecCCCCcEEEEEEcCCCCEEEEEECC------CcEEEEECCCCcEEEEEeCCCCCEEEEEEe
Q psy9598 454 RSLMISSHKYSNLRQHYVNLGHLSAVFCVLFDKLGEVIVTGADD------LLIKLWRARDGKLLATLRGCSGEISDIAID 527 (1915)
Q Consensus 454 ~~~~i~~~~~~~~~~~~~l~gH~~~V~~vafspdg~~LaTGs~D------g~I~IWd~~tg~~~~~l~gH~~~I~~Lafs 527 (1915)
..+...+.....+.....+.. ...-.++++. +|.+.++||.| .++..||..+.+-...-.-.......-...
T Consensus 301 ~~ve~yd~~~~~w~~~a~m~~-~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~ 378 (571)
T KOG4441|consen 301 RSVECYDPKTNEWSSLAPMPS-PRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAV 378 (571)
T ss_pred ceeEEecCCcCcEeecCCCCc-ccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEE
Confidence 344333333333333333332 2334445554 35788889888 357788887766333111111111111112
Q ss_pred CCCCEEEEEeCCC-----cEEEEECCCCc--eEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCC------eEEEEecc
Q psy9598 528 NRNILLAAGTVDK-----TIRIWNLQTLA--PISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDG------CIGFWKYK 594 (1915)
Q Consensus 528 pdg~~LaSgs~Dg-----tIrVWDl~tg~--~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~Dg------tI~iWDl~ 594 (1915)
-+|.+.|+||.|| +|-.||..+.+ .+..+.. ...+.+.... ++.+.++||.++ +|..||..
T Consensus 379 l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~---~r~~~gv~~~---~g~iYi~GG~~~~~~~l~sve~YDP~ 452 (571)
T KOG4441|consen 379 LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLT---RRSGHGVAVL---GGKLYIIGGGDGSSNCLNSVECYDPE 452 (571)
T ss_pred ECCEEEEEeccccccccccEEEecCCCCcccccCCCCc---ceeeeEEEEE---CCEEEEEcCcCCCccccceEEEEcCC
Confidence 3677888999886 46677776533 2222211 2222222221 357778887654 45677776
Q ss_pred cCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCe-----EEEEEecCCCCCceeEEeccCCCCeeEE
Q psy9598 595 LDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHH-----VRVYKMDGVDSPLGILEVEEHSDKVDSI 669 (1915)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~-----I~IwDl~~~~~~~~i~~l~~h~~~V~sl 669 (1915)
++......... ... .... + -.-++.+.++||.|+. |..||... .....+..+......+..+
T Consensus 453 t~~W~~~~~M~------~~R----~~~g-~-a~~~~~iYvvGG~~~~~~~~~VE~ydp~~-~~W~~v~~m~~~rs~~g~~ 519 (571)
T KOG4441|consen 453 TNTWTLIAPMN------TRR----SGFG-V-AVLNGKIYVVGGFDGTSALSSVERYDPET-NQWTMVAPMTSPRSAVGVV 519 (571)
T ss_pred CCceeecCCcc------ccc----ccce-E-EEECCEEEEECCccCCCccceEEEEcCCC-CceeEcccCccccccccEE
Confidence 66432221111 000 1111 1 1225677888887763 66677632 2233332222233333333
Q ss_pred EEcCCCCEEEEEeCCC-----cEEEEEccCCceEEe
Q psy9598 670 QWSHSHLRFVSGSRDG-----TALIWYYKCSQWRFI 700 (1915)
Q Consensus 670 ~fspdg~~L~sgs~DG-----~I~IWDl~~~~~~~~ 700 (1915)
.+ ++...++|+.|| +|..||..+.+|...
T Consensus 520 ~~--~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~~~ 553 (571)
T KOG4441|consen 520 VL--GGKLYAVGGFDGNNNLNTVECYDPETDTWTEV 553 (571)
T ss_pred EE--CCEEEEEecccCccccceeEEcCCCCCceeeC
Confidence 32 566788888886 477888888887653
|
|
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=94.94 E-value=4.3 Score=47.93 Aligned_cols=228 Identities=13% Similarity=0.145 Sum_probs=128.4
Q ss_pred CceEEEEECCCCcEEEEEeCCCeEEEEEec-----CCCCCceeEEecc-----CCCCeeEEEEcCCCC------------
Q psy9598 619 AHILCSSFSPGGLFLATGSGDHHVRVYKMD-----GVDSPLGILEVEE-----HSDKVDSIQWSHSHL------------ 676 (1915)
Q Consensus 619 ~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~-----~~~~~~~i~~l~~-----h~~~V~sl~fspdg~------------ 676 (1915)
..-+.|+|+|.+.+-++....+...+||.. ..... .+..+.. .....+.+.|+....
T Consensus 23 ~N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~-L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a 101 (336)
T TIGR03118 23 RNAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDP-LVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPS 101 (336)
T ss_pred cccceeEecCCCCEEEecCCcceEEeecCCcccccCCccc-eEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccce
Confidence 345789999999888888888999999985 21212 2233332 224577777764332
Q ss_pred EEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEEC--CCCCEEEEEEecCCeEEEEECCCC
Q psy9598 677 RFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWD--ASDRWVITAINFNFQIKIWDAFNG 754 (1915)
Q Consensus 677 ~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~s--pdg~~L~t~s~~Dg~I~vwD~~tg 754 (1915)
.|+.++.||+|.-|...-.....+ .. ...............+++. ..+.+|+++.-..++|.|||-.-.
T Consensus 102 ~Fif~tEdGTisaW~p~v~~t~~~--------~~-~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~ 172 (336)
T TIGR03118 102 RFLFVTEDGTLSGWAPALGTTRMT--------RA-EIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFR 172 (336)
T ss_pred eEEEEeCCceEEeecCcCCccccc--------cc-EEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccc
Confidence 477888999999997432221000 00 0000000011222334443 457888888777899999986422
Q ss_pred ceEEEeeCCCCCeEEEEEccC-----CCCEEE-------------EEecCceEEEEECCCCccccceeeeeeecCCCCcc
Q psy9598 755 DLVQVLKGHTNEVFVLESHPF-----DSRVLL-------------SAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGA 816 (1915)
Q Consensus 755 ~~i~~l~gH~~~V~sl~~sp~-----dg~~La-------------Sgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~ 816 (1915)
.+..-.....+-.-..|.|. .+.+++ .|-.-|.|-+||+. +.. ++.+. .+..-..
T Consensus 173 -~~~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l--~~r~a---s~g~LNa 245 (336)
T TIGR03118 173 -PPPLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQL--LRRVA---SSGRLNA 245 (336)
T ss_pred -cccCCCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcE--EEEec---cCCcccC
Confidence 22110000010000001110 223332 33345789999985 333 34332 3334456
Q ss_pred eEEEEEcC------CCCEEEEEeCCCeEEEEeCCCCcccccCCCceeecCCCCeeeec
Q psy9598 817 LFDGKWSP------DGTTCALTDSYGHLLVYGLGGFKRPQNIPRELFFHTDYRTLNRP 868 (1915)
Q Consensus 817 V~~vafSp------dg~~Lasg~~dG~I~Iwdl~s~~~~~~l~~~~~F~~d~~~Lv~~ 868 (1915)
.+.|+..| .|.+|+---.||+|..||..++..+..+.. +++.+++.+
T Consensus 246 PWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~-----~~G~pi~i~ 298 (336)
T TIGR03118 246 PWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLD-----PDNHPVKVD 298 (336)
T ss_pred CceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecC-----CCCCeEEec
Confidence 77788766 467777767899999999998887766555 666666654
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=94.79 E-value=8.5 Score=46.59 Aligned_cols=162 Identities=20% Similarity=0.210 Sum_probs=81.0
Q ss_pred EeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEec
Q psy9598 514 LRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKY 593 (1915)
Q Consensus 514 l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl 593 (1915)
...-.+.|..+..+++|.+|++++.-..+.-||--...-...-......|.++.|.|++ .+.+ ....|.|++=+.
T Consensus 140 ~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~----~lw~-~~~Gg~~~~s~~ 214 (302)
T PF14870_consen 140 VSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDG----NLWM-LARGGQIQFSDD 214 (302)
T ss_dssp E-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-----EEE-EETTTEEEEEE-
T ss_pred ccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCC----CEEE-EeCCcEEEEccC
Confidence 44556789999999999999988766666788864322222223356789999999853 4434 458888888762
Q ss_pred ccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcC
Q psy9598 594 KLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSH 673 (1915)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fsp 673 (1915)
.... -....+. .......-.+..++|.+++...++|+. |.+ +...++..+.........-...+..|.|..
T Consensus 215 ~~~~----~~w~~~~---~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~ 285 (302)
T PF14870_consen 215 PDDG----ETWSEPI---IPIKTNGYGILDLAYRPPNEIWAVGGS-GTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVN 285 (302)
T ss_dssp TTEE----EEE---B----TTSS--S-EEEEEESSSS-EEEEEST-T-E-EEESSTTSS-EE-GGGTTSSS---EEEEEE
T ss_pred CCCc----ccccccc---CCcccCceeeEEEEecCCCCEEEEeCC-ccE-EEeCCCCccceECccccCCCCceEEEEEcC
Confidence 1110 0111000 011122345899999998877776655 444 344444444444333334456688888876
Q ss_pred CCCEEEEEeCCCcEEEE
Q psy9598 674 SHLRFVSGSRDGTALIW 690 (1915)
Q Consensus 674 dg~~L~sgs~DG~I~IW 690 (1915)
...-|+ .+.+|.|.-|
T Consensus 286 ~~~gf~-lG~~G~ll~~ 301 (302)
T PF14870_consen 286 PDKGFV-LGQDGVLLRY 301 (302)
T ss_dssp TTEEEE-E-STTEEEEE
T ss_pred CCceEE-ECCCcEEEEe
Confidence 654444 4577877655
|
|
| >cd05493 Bromo_ALL-1 Bromodomain, ALL-1 like proteins | Back alignment and domain information |
|---|
Probab=94.78 E-value=0.036 Score=57.07 Aligned_cols=68 Identities=21% Similarity=0.366 Sum_probs=55.6
Q ss_pred ccchhhHHhhhcCCCCCCHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy9598 1572 PMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQNKRSKIYIMTTRLSEFAEEHLRRLTVRWNSH 1640 (1915)
Q Consensus 1572 Pmdl~tI~~kl~~~~Y~s~~ef~~Dv~lif~Na~~yN~~~~s~i~~~a~~l~~~f~~~~~~~~~~~~~~ 1640 (1915)
|.||.-|++||+.|.|.|+.+|.+||-.|++-+.+-...- ..+-+....+..+|-++|..+..++...
T Consensus 59 p~dL~~V~kkl~~G~Y~sv~~F~~DvvkIiqa~l~~e~~~-pe~~ka~s~~Ksf~ik~me~vf~Wf~~~ 126 (131)
T cd05493 59 PLDLEAVGKKLEAGFYTSVLDFSDDIVKIIQAALNSEGGQ-PEIKKANSMAKSFFIKLMESVFPWFNSE 126 (131)
T ss_pred cccHHHHHHHHhccceehHHHHHHHHHHHHHHHHhhccCC-ccccCcchHHHHHHHHHHHHhccccccc
Confidence 8999999999999999999999999999999887755433 4444455667788888998888877644
|
ALL-1 is a vertebrate homologue of Drosophila trithorax and is often affected in chromosomal rearrangements that are linked to acute leukemias, such as acute lymphocytic leukemia (ALL). Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine. |
| >KOG4640|consensus | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.12 Score=65.01 Aligned_cols=96 Identities=18% Similarity=0.201 Sum_probs=78.2
Q ss_pred ccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCCCeE-EEEEccCCCCEEEEEecCceEEEEECCCCc
Q psy9598 720 KKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVF-VLESHPFDSRVLLSAGHDGLIIIWDILSSK 798 (1915)
Q Consensus 720 ~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~-sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~ 798 (1915)
....|..+.|+|.-..||++.. +|.|-+.-+. .+.+.++..|...++ +++|.| ||++||.|-.||+|+|.|+.++.
T Consensus 19 l~~~i~~~ewnP~~dLiA~~t~-~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~-DGkllaVg~kdG~I~L~Dve~~~ 95 (665)
T KOG4640|consen 19 LPINIKRIEWNPKMDLIATRTE-KGELLIHRLN-WQRLWTIPIPGENVTASLCWRP-DGKLLAVGFKDGTIRLHDVEKGG 95 (665)
T ss_pred cccceEEEEEcCccchhheecc-CCcEEEEEec-cceeEeccCCCCccceeeeecC-CCCEEEEEecCCeEEEEEccCCC
Confidence 4456788999999999999988 9999999887 888889987888787 999999 99999999999999999999987
Q ss_pred cccceeeeeeecCCCCcceEEEEEcC
Q psy9598 799 QRGYKWFHNIVEGQGEGALFDGKWSP 824 (1915)
Q Consensus 799 ~~~~~~~~~~~~~~~~~~V~~vafSp 824 (1915)
. +..+. ......|.++-|++
T Consensus 96 ~--l~~~~----~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 96 R--LVSFL----FSVETDISKGIWDR 115 (665)
T ss_pred c--eeccc----cccccchheeeccc
Confidence 7 44421 11235677777763
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.65 E-value=12 Score=43.75 Aligned_cols=241 Identities=13% Similarity=0.097 Sum_probs=122.2
Q ss_pred EEEEeCCC-CEEEEEeCCCc-EEEEECCCCceEEEeecCCCC--eEEEEeccCccCCCcEEEEEeCC-----CeEEEEec
Q psy9598 523 DIAIDNRN-ILLAAGTVDKT-IRIWNLQTLAPISVLVGHQGI--ITGVNFCPLEVNGFNYLASTSTD-----GCIGFWKY 593 (1915)
Q Consensus 523 ~Lafspdg-~~LaSgs~Dgt-IrVWDl~tg~~~~~l~~h~~~--V~sl~fsp~~~~d~~~L~sgs~D-----gtI~iWDl 593 (1915)
.|+|+|.. .-++.+-.-|+ ..|+|..+.+...++....+. --.-.|+| ++.+|+..-.| |.|-|||.
T Consensus 72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~----dG~~LYATEndfd~~rGViGvYd~ 147 (366)
T COG3490 72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSP----DGRLLYATENDFDPNRGVIGVYDA 147 (366)
T ss_pred CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCC----CCcEEEeecCCCCCCCceEEEEec
Confidence 45666643 23444444444 467888877766555432221 11235888 45788876544 78999998
Q ss_pred ccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEE-Ee-------cCCC-----------CCc
Q psy9598 594 KLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVY-KM-------DGVD-----------SPL 654 (1915)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~Iw-Dl-------~~~~-----------~~~ 654 (1915)
+.+-. ....+..|.-....+.+.+||+.|+.+.. -|..- |. +... ...
T Consensus 148 r~~fq-----------rvgE~~t~GiGpHev~lm~DGrtlvvanG--GIethpdfgR~~lNldsMePSlvlld~atG~li 214 (366)
T COG3490 148 REGFQ-----------RVGEFSTHGIGPHEVTLMADGRTLVVANG--GIETHPDFGRTELNLDSMEPSLVLLDAATGNLI 214 (366)
T ss_pred ccccc-----------eecccccCCcCcceeEEecCCcEEEEeCC--ceecccccCccccchhhcCccEEEEeccccchh
Confidence 74311 11122233344567889999998887643 33333 21 1111 001
Q ss_pred eeEEec--cCCCCeeEEEEcCCCCEEEEEeCCCcEE-----EEEccCCceEEeeecccccCCCCccccccccccccEEEE
Q psy9598 655 GILEVE--EHSDKVDSIQWSHSHLRFVSGSRDGTAL-----IWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMV 727 (1915)
Q Consensus 655 ~i~~l~--~h~~~V~sl~fspdg~~L~sgs~DG~I~-----IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v 727 (1915)
...++. -+...|..++..++|..++.+-.-|--. |=-...++.. ................|-+|
T Consensus 215 ekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l---------~~~~~pee~~~~~anYigsi 285 (366)
T COG3490 215 EKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPL---------EFLDLPEEQTAAFANYIGSI 285 (366)
T ss_pred hhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcC---------cccCCCHHHHHHHHhhhhhe
Confidence 111111 2334466666666665443332211100 0000000000 00000011122344668889
Q ss_pred EECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEEC
Q psy9598 728 AWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDI 794 (1915)
Q Consensus 728 a~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl 794 (1915)
+.+.+..+++.++-..+...+||..+|..+..-.-.. +..|+. ...-++..+.+|.|.++.-
T Consensus 286 A~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l~d--aaGva~---~~~gf~vssg~G~~~~~s~ 347 (366)
T COG3490 286 AANRRDGLVALTSPRGNRAVIWDAATGAVVSEAALPD--AAGVAA---AKGGFAVSSGQGRIIFYSR 347 (366)
T ss_pred eecccCCeEEEecCCCCeEEEEEcCCCcEEecccccc--ccccee---ccCceEEecCCceEEeccc
Confidence 9988888888877757788999999998876533111 222222 2233555566888887743
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1915 | ||||
| 3q2e_A | 123 | Crystal Structure Of The Second Bromodomain Of Huma | 4e-28 | ||
| 3q2e_A | 123 | Crystal Structure Of The Second Bromodomain Of Huma | 4e-28 | ||
| 3mb3_A | 135 | Crystal Structure Of The Second Bromodomain Of Plec | 5e-27 | ||
| 3mb3_A | 135 | Crystal Structure Of The Second Bromodomain Of Plec | 5e-27 | ||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 6e-18 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 1e-16 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 2e-05 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 2e-16 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 1e-05 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 2e-16 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 1e-05 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 2e-16 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 1e-05 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 3e-16 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 1e-05 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 3e-16 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 1e-05 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 3e-16 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 1e-05 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 3e-16 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 1e-05 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 3e-16 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 1e-05 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 3e-16 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 1e-05 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 3e-16 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 1e-05 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 4e-16 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 1e-05 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 4e-16 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 7e-06 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 5e-16 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 8e-06 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 7e-16 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 2e-05 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 8e-16 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 2e-05 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 8e-16 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 2e-05 | ||
| 1vyh_C | 410 | Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | 1e-15 | ||
| 2ovp_B | 445 | Structure Of The Skp1-Fbw7 Complex Length = 445 | 1e-12 | ||
| 1erj_A | 393 | Crystal Structure Of The C-Terminal Wd40 Domain Of | 5e-12 | ||
| 1erj_A | 393 | Crystal Structure Of The C-Terminal Wd40 Domain Of | 8e-06 | ||
| 3i3j_A | 124 | Crystal Structure Of The Bromodomain Of Human Ep300 | 2e-11 | ||
| 3i3j_A | 124 | Crystal Structure Of The Bromodomain Of Human Ep300 | 2e-11 | ||
| 3mks_B | 464 | Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH | 9e-11 | ||
| 1p22_A | 435 | Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex | 9e-11 | ||
| 1jsp_B | 121 | Nmr Structure Of Cbp Bromodomain In Complex With P5 | 1e-10 | ||
| 1jsp_B | 121 | Nmr Structure Of Cbp Bromodomain In Complex With P5 | 1e-10 | ||
| 3dwy_A | 119 | Crystal Structure Of The Bromodomain Of Human Crebb | 1e-10 | ||
| 3dwy_A | 119 | Crystal Structure Of The Bromodomain Of Human Crebb | 1e-10 | ||
| 1nex_B | 464 | Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp | 4e-10 | ||
| 3zey_7 | 318 | High-resolution Cryo-electron Microscopy Structure | 8e-10 | ||
| 3uv4_A | 158 | Crystal Structure Of The Second Bromodomain Of Huma | 9e-09 | ||
| 3uv4_A | 158 | Crystal Structure Of The Second Bromodomain Of Huma | 9e-09 | ||
| 3jvj_A | 131 | Crystal Structure Of The Bromodomain 1 In Mouse Brd | 1e-08 | ||
| 3jvj_A | 131 | Crystal Structure Of The Bromodomain 1 In Mouse Brd | 1e-08 | ||
| 4don_A | 145 | Brd4 Bromodomain 1 Complex With A Fragment 3,4-dihy | 2e-08 | ||
| 4don_A | 145 | Brd4 Bromodomain 1 Complex With A Fragment 3,4-dihy | 2e-08 | ||
| 2oss_A | 127 | Crystal Structure Of The Bromo Domain 1 In Human Br | 2e-08 | ||
| 2oss_A | 127 | Crystal Structure Of The Bromo Domain 1 In Human Br | 2e-08 | ||
| 4hbw_A | 127 | Crystal Structure Of The First Bromodomain Of Human | 2e-08 | ||
| 4hbw_A | 127 | Crystal Structure Of The First Bromodomain Of Human | 2e-08 | ||
| 3aad_A | 292 | Structure Of The Histone Chaperone Cia/asf1-double | 2e-08 | ||
| 3aad_A | 292 | Structure Of The Histone Chaperone Cia/asf1-double | 2e-08 | ||
| 3uv5_A | 265 | Crystal Structure Of The Tandem Bromodomains Of Hum | 2e-08 | ||
| 3uv5_A | 265 | Crystal Structure Of The Tandem Bromodomains Of Hum | 2e-08 | ||
| 1eqf_A | 280 | Crystal Structure Of The Double Bromodomain Module | 2e-08 | ||
| 1eqf_A | 280 | Crystal Structure Of The Double Bromodomain Module | 2e-08 | ||
| 4a9e_A | 154 | N-Terminal Bromodomain Of Human Brd2 With 3-Methyl- | 3e-08 | ||
| 4a9e_A | 154 | N-Terminal Bromodomain Of Human Brd2 With 3-Methyl- | 3e-08 | ||
| 3hmh_A | 155 | Crystal Structure Of The Second Bromodomain Of Huma | 4e-08 | ||
| 3hmh_A | 155 | Crystal Structure Of The Second Bromodomain Of Huma | 4e-08 | ||
| 2ydw_A | 153 | Crystal Structure Of The First Bromodomain Of Human | 5e-08 | ||
| 2ydw_A | 153 | Crystal Structure Of The First Bromodomain Of Human | 5e-08 | ||
| 2ri7_A | 174 | Crystal Structure Of Phd Finger-Linker-Bromodomain | 7e-08 | ||
| 2ri7_A | 174 | Crystal Structure Of Phd Finger-Linker-Bromodomain | 7e-08 | ||
| 3qzv_A | 174 | Crystal Structure Of Bptf Phd-Linker-Bromo In Compl | 7e-08 | ||
| 3qzv_A | 174 | Crystal Structure Of Bptf Phd-Linker-Bromo In Compl | 7e-08 | ||
| 3qzt_A | 115 | Crystal Structure Of Bptf Bromo In Complex With His | 8e-08 | ||
| 3qzt_A | 115 | Crystal Structure Of Bptf Bromo In Complex With His | 8e-08 | ||
| 3uv2_A | 126 | Crystal Structure Of The Bromodomain Of Human Nucle | 8e-08 | ||
| 3uv2_A | 126 | Crystal Structure Of The Bromodomain Of Human Nucle | 8e-08 | ||
| 3nxb_A | 116 | Crystal Structure Of The Bromodomain Of Human Cecr2 | 9e-08 | ||
| 3nxb_A | 116 | Crystal Structure Of The Bromodomain Of Human Cecr2 | 9e-08 | ||
| 2wp2_A | 120 | Structure Of Brdt Bromodomain Bd1 Bound To A Diacet | 9e-08 | ||
| 2wp2_A | 120 | Structure Of Brdt Bromodomain Bd1 Bound To A Diacet | 9e-08 | ||
| 3tlp_A | 150 | Crystal Structure Of The Fourth Bromodomain Of Huma | 1e-07 | ||
| 3tlp_A | 150 | Crystal Structure Of The Fourth Bromodomain Of Huma | 1e-07 | ||
| 2l5e_A | 128 | Complex Between Bd1 Of Brd3 And Gata-1 C-Tail Lengt | 1e-07 | ||
| 2l5e_A | 128 | Complex Between Bd1 Of Brd3 And Gata-1 C-Tail Lengt | 1e-07 | ||
| 3qzs_A | 115 | Crystal Structure Of Bptf Bromo In Complex With His | 1e-07 | ||
| 3qzs_A | 115 | Crystal Structure Of Bptf Bromo In Complex With His | 1e-07 | ||
| 2nxb_A | 123 | Crystal Structure Of Human Bromodomain Containing P | 2e-07 | ||
| 2nxb_A | 123 | Crystal Structure Of Human Bromodomain Containing P | 2e-07 | ||
| 2yw5_A | 138 | Solution Structure Of The Bromodomain From Human Br | 2e-07 | ||
| 2yw5_A | 138 | Solution Structure Of The Bromodomain From Human Br | 2e-07 | ||
| 2yyn_A | 135 | Crystal Sturcture Of Human Bromodomain Protein Leng | 3e-07 | ||
| 2yyn_A | 135 | Crystal Sturcture Of Human Bromodomain Protein Leng | 3e-07 | ||
| 1e6i_A | 121 | Bromodomain From Gcn5 Complexed With Acetylated H4 | 3e-07 | ||
| 1e6i_A | 121 | Bromodomain From Gcn5 Complexed With Acetylated H4 | 3e-07 | ||
| 3o33_A | 184 | Crystal Structure Of Trim24 Phd-Bromo In The Free S | 4e-07 | ||
| 3o33_A | 184 | Crystal Structure Of Trim24 Phd-Bromo In The Free S | 4e-07 | ||
| 3shf_A | 1256 | Crystal Structure Of The R265s Mutant Of Full-Lengt | 6e-07 | ||
| 3shf_A | 1256 | Crystal Structure Of The R265s Mutant Of Full-Lengt | 2e-05 | ||
| 3sfz_A | 1249 | Crystal Structure Of Full-Length Murine Apaf-1 Leng | 6e-07 | ||
| 3sfz_A | 1249 | Crystal Structure Of Full-Length Murine Apaf-1 Leng | 2e-05 | ||
| 3rfh_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 6e-07 | ||
| 3rfh_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 2e-05 | ||
| 3izb_a | 319 | Localization Of The Small Subunit Ribosomal Protein | 6e-07 | ||
| 3izb_a | 319 | Localization Of The Small Subunit Ribosomal Protein | 2e-05 | ||
| 3jyv_R | 313 | Structure Of The 40s Rrna And Proteins And PE TRNA | 6e-07 | ||
| 3jyv_R | 313 | Structure Of The 40s Rrna And Proteins And PE TRNA | 2e-05 | ||
| 3rfg_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 6e-07 | ||
| 3rfg_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 2e-05 | ||
| 1trj_A | 314 | Homology Model Of Yeast Rack1 Protein Fitted Into 1 | 6e-07 | ||
| 1trj_A | 314 | Homology Model Of Yeast Rack1 Protein Fitted Into 1 | 2e-05 | ||
| 1f68_A | 103 | Nmr Solution Structure Of The Bromodomain From Huma | 7e-07 | ||
| 1f68_A | 103 | Nmr Solution Structure Of The Bromodomain From Huma | 7e-07 | ||
| 2rfj_A | 119 | Crystal Structure Of The Bromo Domain 1 In Human Br | 9e-07 | ||
| 2rfj_A | 119 | Crystal Structure Of The Bromo Domain 1 In Human Br | 9e-07 | ||
| 3dm0_A | 694 | Maltose Binding Protein Fusion With Rack1 From A. T | 1e-06 | ||
| 3frx_A | 319 | Crystal Structure Of The Yeast Orthologue Of Rack1, | 1e-06 | ||
| 3frx_A | 319 | Crystal Structure Of The Yeast Orthologue Of Rack1, | 4e-05 | ||
| 2f6j_A | 174 | Crystal Structure Of Phd Finger-Linker-Bromodomain | 1e-06 | ||
| 2f6j_A | 174 | Crystal Structure Of Phd Finger-Linker-Bromodomain | 1e-06 | ||
| 3d7c_A | 112 | Crystal Structure Of The Bromodomain Of Human Gcn5, | 1e-06 | ||
| 3d7c_A | 112 | Crystal Structure Of The Bromodomain Of Human Gcn5, | 1e-06 | ||
| 3iza_B | 1263 | Structure Of An Apoptosome-Procaspase-9 Card Comple | 2e-06 | ||
| 3iza_B | 1263 | Structure Of An Apoptosome-Procaspase-9 Card Comple | 1e-05 | ||
| 3acp_A | 417 | Crystal Structure Of Yeast Rpn14, A Chaperone Of Th | 5e-06 | ||
| 3vl1_A | 420 | Crystal Structure Of Yeast Rpn14 Length = 420 | 5e-06 | ||
| 3gg3_A | 119 | Crystal Structure Of The Bromodomain Of Human Pcaf | 8e-06 | ||
| 3gg3_A | 119 | Crystal Structure Of The Bromodomain Of Human Pcaf | 8e-06 | ||
| 3aqa_A | 128 | Crystal Structure Of The Human Brd2 Bd1 Bromodomain | 8e-06 | ||
| 3aqa_A | 128 | Crystal Structure Of The Human Brd2 Bd1 Bromodomain | 8e-06 | ||
| 1n72_A | 118 | Structure And Ligand Of A Histone Acetyltransferase | 8e-06 | ||
| 1n72_A | 118 | Structure And Ligand Of A Histone Acetyltransferase | 8e-06 | ||
| 2e7o_A | 112 | Solution Structure Of The Bromodomain From Human Br | 1e-05 | ||
| 2e7o_A | 112 | Solution Structure Of The Bromodomain From Human Br | 1e-05 | ||
| 1x0j_A | 122 | Crystal Structure Analysis Of The N-Terminal Bromod | 1e-05 | ||
| 1x0j_A | 122 | Crystal Structure Analysis Of The N-Terminal Bromod | 1e-05 | ||
| 3g0l_A | 117 | Crystal Structure Of Human Bromodomain Adjacent To | 1e-05 | ||
| 3g0l_A | 117 | Crystal Structure Of Human Bromodomain Adjacent To | 1e-05 | ||
| 2aq5_A | 402 | Crystal Structure Of Murine Coronin-1 Length = 402 | 2e-05 | ||
| 4ggd_A | 431 | Structural Analysis Of Human Cdc20 Supports Multisi | 2e-05 | ||
| 3fm0_A | 345 | Crystal Structure Of Wd40 Protein Ciao1 Length = 34 | 2e-05 | ||
| 2pbi_B | 354 | The Multifunctional Nature Of Gbeta5RGS9 REVEALED F | 3e-05 | ||
| 2b4e_A | 402 | Crystal Structure Of Murine Coronin-1: Monoclinic F | 3e-05 | ||
| 4gga_A | 420 | Structural Analysis Of Human Cdc20 Supports Multi-S | 3e-05 | ||
| 3u5m_A | 207 | Crystal Structure Of Trim33 Phd-Bromo In The Free S | 7e-05 | ||
| 3u5m_A | 207 | Crystal Structure Of Trim33 Phd-Bromo In The Free S | 7e-05 | ||
| 2wp1_A | 126 | Structure Of Brdt Bromodomain 2 Bound To An Acetyla | 8e-05 | ||
| 2wp1_A | 126 | Structure Of Brdt Bromodomain 2 Bound To An Acetyla | 8e-05 | ||
| 4aez_A | 401 | Crystal Structure Of Mitotic Checkpoint Complex Len | 9e-05 | ||
| 2xzm_R | 343 | Crystal Structure Of The Eukaryotic 40s Ribosomal S | 1e-04 | ||
| 2xzm_R | 343 | Crystal Structure Of The Eukaryotic 40s Ribosomal S | 2e-04 | ||
| 2e7n_A | 117 | Solution Structure Of The Second Bromodomain From H | 1e-04 | ||
| 2e7n_A | 117 | Solution Structure Of The Second Bromodomain From H | 1e-04 | ||
| 2oo1_A | 113 | Crystal Structure Of The Bromo Domain 2 Of Human Br | 1e-04 | ||
| 2oo1_A | 113 | Crystal Structure Of The Bromo Domain 2 Of Human Br | 1e-04 | ||
| 2r10_A | 361 | Structure Of An Acetylated Rsc4 Tandem Bromodomain | 2e-04 | ||
| 2r10_A | 361 | Structure Of An Acetylated Rsc4 Tandem Bromodomain | 2e-04 | ||
| 2r0v_A | 346 | Structure Of The Rsc4 Tandem Bromodomain Acetylated | 2e-04 | ||
| 2r0v_A | 346 | Structure Of The Rsc4 Tandem Bromodomain Acetylated | 2e-04 | ||
| 2bcj_B | 340 | Crystal Structure Of G Protein-coupled Receptor Kin | 2e-04 | ||
| 1gg2_B | 340 | G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet | 2e-04 | ||
| 3sn6_B | 351 | Crystal Structure Of The Beta2 Adrenergic Receptor- | 2e-04 | ||
| 3oni_A | 114 | Crystal Structure Of The Second Bromodomain Of Huma | 2e-04 | ||
| 3oni_A | 114 | Crystal Structure Of The Second Bromodomain Of Huma | 2e-04 | ||
| 2dvv_A | 112 | Crystal Structure Of The Second Bromodomain Of The | 2e-04 | ||
| 2dvv_A | 112 | Crystal Structure Of The Second Bromodomain Of The | 2e-04 | ||
| 2g4a_A | 116 | Solution Structure Of A Bromodomain From Ring3 Prot | 3e-04 | ||
| 2g4a_A | 116 | Solution Structure Of A Bromodomain From Ring3 Prot | 3e-04 | ||
| 3ow8_A | 321 | Crystal Structure Of The Wd Repeat-Containing Prote | 3e-04 | ||
| 4ggc_A | 318 | Structural Analysis Of Human Cdc20 Supports Multi-S | 3e-04 | ||
| 2i8n_A | 114 | Solution Structure Of The Second Bromodomain Of Brd | 4e-04 | ||
| 2i8n_A | 114 | Solution Structure Of The Second Bromodomain Of Brd | 4e-04 | ||
| 3lxj_A | 136 | Crystal Structure Of The Bromodomain Of Human Aaa D | 4e-04 | ||
| 3lxj_A | 136 | Crystal Structure Of The Bromodomain Of Human Aaa D | 4e-04 | ||
| 2hes_X | 330 | Cytosolic Iron-sulphur Assembly Protein- 1 Length = | 4e-04 | ||
| 2hes_X | 330 | Cytosolic Iron-sulphur Assembly Protein- 1 Length = | 6e-04 | ||
| 1a0r_B | 340 | Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA- | 5e-04 | ||
| 1got_B | 340 | Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer | 5e-04 | ||
| 2zkq_a | 317 | Structure Of A Mammalian Ribosomal 40s Subunit With | 6e-04 | ||
| 4aow_A | 340 | Crystal Structure Of The Human Rack1 Protein At A R | 6e-04 | ||
| 3jvl_A | 120 | Crystal Structure Of Bromodomain 2 Of Mouse Brd4 Le | 6e-04 | ||
| 3jvl_A | 120 | Crystal Structure Of Bromodomain 2 Of Mouse Brd4 Le | 6e-04 | ||
| 2ktb_B | 121 | Solution Structure Of The Second Bromodomain Of Hum | 7e-04 | ||
| 2ktb_B | 121 | Solution Structure Of The Second Bromodomain Of Hum | 7e-04 | ||
| 3ljw_A | 120 | Crystal Structure Of The Second Bromodomain Of Huma | 7e-04 | ||
| 3ljw_A | 120 | Crystal Structure Of The Second Bromodomain Of Huma | 7e-04 | ||
| 3hmf_A | 116 | Crystal Structure Of The Second Bromodomain Of Huma | 8e-04 | ||
| 3hmf_A | 116 | Crystal Structure Of The Second Bromodomain Of Huma | 8e-04 |
| >pdb|3Q2E|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Bromodomain And Wd Repeat-Containing Protein 1 Isoform A (Wdr9) Length = 123 | Back alignment and structure |
|
| >pdb|3Q2E|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Bromodomain And Wd Repeat-Containing Protein 1 Isoform A (Wdr9) Length = 123 | Back alignment and structure |
|
| >pdb|3MB3|A Chain A, Crystal Structure Of The Second Bromodomain Of Pleckstrin Homology Domain Interacting Protein (Phip) Length = 135 | Back alignment and structure |
|
| >pdb|3MB3|A Chain A, Crystal Structure Of The Second Bromodomain Of Pleckstrin Homology Domain Interacting Protein (Phip) Length = 135 | Back alignment and structure |
|
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | Back alignment and structure |
|
| >pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445 | Back alignment and structure |
|
| >pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393 | Back alignment and structure |
|
| >pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393 | Back alignment and structure |
|
| >pdb|3I3J|A Chain A, Crystal Structure Of The Bromodomain Of Human Ep300 Length = 124 | Back alignment and structure |
|
| >pdb|3I3J|A Chain A, Crystal Structure Of The Bromodomain Of Human Ep300 Length = 124 | Back alignment and structure |
|
| >pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464 | Back alignment and structure |
|
| >pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435 | Back alignment and structure |
|
| >pdb|1JSP|B Chain B, Nmr Structure Of Cbp Bromodomain In Complex With P53 Peptide Length = 121 | Back alignment and structure |
|
| >pdb|1JSP|B Chain B, Nmr Structure Of Cbp Bromodomain In Complex With P53 Peptide Length = 121 | Back alignment and structure |
|
| >pdb|3DWY|A Chain A, Crystal Structure Of The Bromodomain Of Human Crebbp Length = 119 | Back alignment and structure |
|
| >pdb|3DWY|A Chain A, Crystal Structure Of The Bromodomain Of Human Crebbp Length = 119 | Back alignment and structure |
|
| >pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464 | Back alignment and structure |
|
| >pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318 | Back alignment and structure |
|
| >pdb|3UV4|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Transcription Initiation Factor Tfiid Subunit 1 (Taf1) Length = 158 | Back alignment and structure |
|
| >pdb|3UV4|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Transcription Initiation Factor Tfiid Subunit 1 (Taf1) Length = 158 | Back alignment and structure |
|
| >pdb|3JVJ|A Chain A, Crystal Structure Of The Bromodomain 1 In Mouse Brd4 Length = 131 | Back alignment and structure |
|
| >pdb|3JVJ|A Chain A, Crystal Structure Of The Bromodomain 1 In Mouse Brd4 Length = 131 | Back alignment and structure |
|
| >pdb|4DON|A Chain A, Brd4 Bromodomain 1 Complex With A Fragment 3,4-dihydro-3-methyl-2(1h)- Quinazolinon Length = 145 | Back alignment and structure |
|
| >pdb|4DON|A Chain A, Brd4 Bromodomain 1 Complex With A Fragment 3,4-dihydro-3-methyl-2(1h)- Quinazolinon Length = 145 | Back alignment and structure |
|
| >pdb|2OSS|A Chain A, Crystal Structure Of The Bromo Domain 1 In Human Bromodomain Containing Protein 4 (Brd4) Length = 127 | Back alignment and structure |
|
| >pdb|2OSS|A Chain A, Crystal Structure Of The Bromo Domain 1 In Human Bromodomain Containing Protein 4 (Brd4) Length = 127 | Back alignment and structure |
|
| >pdb|4HBW|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4 In Complex With A Quinazoline Ligand Length = 127 | Back alignment and structure |
|
| >pdb|4HBW|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4 In Complex With A Quinazoline Ligand Length = 127 | Back alignment and structure |
|
| >pdb|3AAD|A Chain A, Structure Of The Histone Chaperone Cia/asf1-double Bromodomain Complex Linking Histone Modifications And Site-specific Histone Eviction Length = 292 | Back alignment and structure |
|
| >pdb|3AAD|A Chain A, Structure Of The Histone Chaperone Cia/asf1-double Bromodomain Complex Linking Histone Modifications And Site-specific Histone Eviction Length = 292 | Back alignment and structure |
|
| >pdb|3UV5|A Chain A, Crystal Structure Of The Tandem Bromodomains Of Human Transcription Initiation Factor Tfiid Subunit 1 (Taf1) Length = 265 | Back alignment and structure |
|
| >pdb|3UV5|A Chain A, Crystal Structure Of The Tandem Bromodomains Of Human Transcription Initiation Factor Tfiid Subunit 1 (Taf1) Length = 265 | Back alignment and structure |
|
| >pdb|1EQF|A Chain A, Crystal Structure Of The Double Bromodomain Module From Human Tafii250 Length = 280 | Back alignment and structure |
|
| >pdb|1EQF|A Chain A, Crystal Structure Of The Double Bromodomain Module From Human Tafii250 Length = 280 | Back alignment and structure |
|
| >pdb|4A9E|A Chain A, N-Terminal Bromodomain Of Human Brd2 With 3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One Length = 154 | Back alignment and structure |
|
| >pdb|4A9E|A Chain A, N-Terminal Bromodomain Of Human Brd2 With 3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One Length = 154 | Back alignment and structure |
|
| >pdb|3HMH|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Tbp-Associated Factor Rna Polymerase 1-Like (Taf1l) Length = 155 | Back alignment and structure |
|
| >pdb|3HMH|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Tbp-Associated Factor Rna Polymerase 1-Like (Taf1l) Length = 155 | Back alignment and structure |
|
| >pdb|2YDW|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd2 With The Inhibitor Gw841819x Length = 153 | Back alignment and structure |
|
| >pdb|2YDW|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd2 With The Inhibitor Gw841819x Length = 153 | Back alignment and structure |
|
| >pdb|2RI7|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain Y17e Mutant From Human Bptf In The H3(1-9)k4me2 Bound State Length = 174 | Back alignment and structure |
|
| >pdb|2RI7|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain Y17e Mutant From Human Bptf In The H3(1-9)k4me2 Bound State Length = 174 | Back alignment and structure |
|
| >pdb|3QZV|A Chain A, Crystal Structure Of Bptf Phd-Linker-Bromo In Complex With Histone H4k12ac Peptide Length = 174 | Back alignment and structure |
|
| >pdb|3QZV|A Chain A, Crystal Structure Of Bptf Phd-Linker-Bromo In Complex With Histone H4k12ac Peptide Length = 174 | Back alignment and structure |
|
| >pdb|3QZT|A Chain A, Crystal Structure Of Bptf Bromo In Complex With Histone H4k16ac - Form Ii Length = 115 | Back alignment and structure |
|
| >pdb|3QZT|A Chain A, Crystal Structure Of Bptf Bromo In Complex With Histone H4k16ac - Form Ii Length = 115 | Back alignment and structure |
|
| >pdb|3UV2|A Chain A, Crystal Structure Of The Bromodomain Of Human Nucleosome-Remodeling Factor Subunit Bptf Length = 126 | Back alignment and structure |
|
| >pdb|3UV2|A Chain A, Crystal Structure Of The Bromodomain Of Human Nucleosome-Remodeling Factor Subunit Bptf Length = 126 | Back alignment and structure |
|
| >pdb|3NXB|A Chain A, Crystal Structure Of The Bromodomain Of Human Cecr2 Length = 116 | Back alignment and structure |
|
| >pdb|3NXB|A Chain A, Crystal Structure Of The Bromodomain Of Human Cecr2 Length = 116 | Back alignment and structure |
|
| >pdb|2WP2|A Chain A, Structure Of Brdt Bromodomain Bd1 Bound To A Diacetylated Histone H4 Peptide. Length = 120 | Back alignment and structure |
|
| >pdb|2WP2|A Chain A, Structure Of Brdt Bromodomain Bd1 Bound To A Diacetylated Histone H4 Peptide. Length = 120 | Back alignment and structure |
|
| >pdb|3TLP|A Chain A, Crystal Structure Of The Fourth Bromodomain Of Human Poly-Bromodomain Containing Protein 1 (Pb1) Length = 150 | Back alignment and structure |
|
| >pdb|3TLP|A Chain A, Crystal Structure Of The Fourth Bromodomain Of Human Poly-Bromodomain Containing Protein 1 (Pb1) Length = 150 | Back alignment and structure |
|
| >pdb|2L5E|A Chain A, Complex Between Bd1 Of Brd3 And Gata-1 C-Tail Length = 128 | Back alignment and structure |
|
| >pdb|2L5E|A Chain A, Complex Between Bd1 Of Brd3 And Gata-1 C-Tail Length = 128 | Back alignment and structure |
|
| >pdb|3QZS|A Chain A, Crystal Structure Of Bptf Bromo In Complex With Histone H4k16ac - Form I Length = 115 | Back alignment and structure |
|
| >pdb|3QZS|A Chain A, Crystal Structure Of Bptf Bromo In Complex With Histone H4k16ac - Form I Length = 115 | Back alignment and structure |
|
| >pdb|2NXB|A Chain A, Crystal Structure Of Human Bromodomain Containing Protein 3 (Brd3) Length = 123 | Back alignment and structure |
|
| >pdb|2NXB|A Chain A, Crystal Structure Of Human Bromodomain Containing Protein 3 (Brd3) Length = 123 | Back alignment and structure |
|
| >pdb|2YW5|A Chain A, Solution Structure Of The Bromodomain From Human Bromodomain Containing Protein 3 Length = 138 | Back alignment and structure |
|
| >pdb|2YW5|A Chain A, Solution Structure Of The Bromodomain From Human Bromodomain Containing Protein 3 Length = 138 | Back alignment and structure |
|
| >pdb|2YYN|A Chain A, Crystal Sturcture Of Human Bromodomain Protein Length = 135 | Back alignment and structure |
|
| >pdb|2YYN|A Chain A, Crystal Sturcture Of Human Bromodomain Protein Length = 135 | Back alignment and structure |
|
| >pdb|1E6I|A Chain A, Bromodomain From Gcn5 Complexed With Acetylated H4 Peptide Length = 121 | Back alignment and structure |
|
| >pdb|1E6I|A Chain A, Bromodomain From Gcn5 Complexed With Acetylated H4 Peptide Length = 121 | Back alignment and structure |
|
| >pdb|3O33|A Chain A, Crystal Structure Of Trim24 Phd-Bromo In The Free State Length = 184 | Back alignment and structure |
|
| >pdb|3O33|A Chain A, Crystal Structure Of Trim24 Phd-Bromo In The Free State Length = 184 | Back alignment and structure |
|
| >pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256 | Back alignment and structure |
|
| >pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256 | Back alignment and structure |
|
| >pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249 | Back alignment and structure |
|
| >pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249 | Back alignment and structure |
|
| >pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319 | Back alignment and structure |
|
| >pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319 | Back alignment and structure |
|
| >pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319 | Back alignment and structure |
|
| >pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319 | Back alignment and structure |
|
| >pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313 | Back alignment and structure |
|
| >pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313 | Back alignment and structure |
|
| >pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319 | Back alignment and structure |
|
| >pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319 | Back alignment and structure |
|
| >pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314 | Back alignment and structure |
|
| >pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314 | Back alignment and structure |
|
| >pdb|1F68|A Chain A, Nmr Solution Structure Of The Bromodomain From Human Gcn5 Length = 103 | Back alignment and structure |
|
| >pdb|1F68|A Chain A, Nmr Solution Structure Of The Bromodomain From Human Gcn5 Length = 103 | Back alignment and structure |
|
| >pdb|2RFJ|A Chain A, Crystal Structure Of The Bromo Domain 1 In Human Bromodomain Containing Protein, Testis Specific (Brdt) Length = 119 | Back alignment and structure |
|
| >pdb|2RFJ|A Chain A, Crystal Structure Of The Bromo Domain 1 In Human Bromodomain Containing Protein, Testis Specific (Brdt) Length = 119 | Back alignment and structure |
|
| >pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694 | Back alignment and structure |
|
| >pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319 | Back alignment and structure |
|
| >pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319 | Back alignment and structure |
|
| >pdb|2F6J|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain Fragment Of Human Bptf In The H3(1-15)k4me3 Bound State Length = 174 | Back alignment and structure |
|
| >pdb|2F6J|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain Fragment Of Human Bptf In The H3(1-15)k4me3 Bound State Length = 174 | Back alignment and structure |
|
| >pdb|3D7C|A Chain A, Crystal Structure Of The Bromodomain Of Human Gcn5, The General Control Of Amino-Acid Synthesis Protein 5-Like 2 Length = 112 | Back alignment and structure |
|
| >pdb|3D7C|A Chain A, Crystal Structure Of The Bromodomain Of Human Gcn5, The General Control Of Amino-Acid Synthesis Protein 5-Like 2 Length = 112 | Back alignment and structure |
|
| >pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s Reg Particle Of The Proteasome Length = 417 | Back alignment and structure |
|
| >pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14 Length = 420 | Back alignment and structure |
|
| >pdb|3GG3|A Chain A, Crystal Structure Of The Bromodomain Of Human Pcaf Length = 119 | Back alignment and structure |
|
| >pdb|3GG3|A Chain A, Crystal Structure Of The Bromodomain Of Human Pcaf Length = 119 | Back alignment and structure |
|
| >pdb|3AQA|A Chain A, Crystal Structure Of The Human Brd2 Bd1 Bromodomain In Complex With A Brd2-Interactive Compound, Bic1 Length = 128 | Back alignment and structure |
|
| >pdb|3AQA|A Chain A, Crystal Structure Of The Human Brd2 Bd1 Bromodomain In Complex With A Brd2-Interactive Compound, Bic1 Length = 128 | Back alignment and structure |
|
| >pdb|1N72|A Chain A, Structure And Ligand Of A Histone Acetyltransferase Bromodomain Length = 118 | Back alignment and structure |
|
| >pdb|1N72|A Chain A, Structure And Ligand Of A Histone Acetyltransferase Bromodomain Length = 118 | Back alignment and structure |
|
| >pdb|2E7O|A Chain A, Solution Structure Of The Bromodomain From Human Bromodomain Adjacent To Zinc Finger Domain 2b Length = 112 | Back alignment and structure |
|
| >pdb|2E7O|A Chain A, Solution Structure Of The Bromodomain From Human Bromodomain Adjacent To Zinc Finger Domain 2b Length = 112 | Back alignment and structure |
|
| >pdb|1X0J|A Chain A, Crystal Structure Analysis Of The N-Terminal Bromodomain Of Human Brd2 Length = 122 | Back alignment and structure |
|
| >pdb|1X0J|A Chain A, Crystal Structure Analysis Of The N-Terminal Bromodomain Of Human Brd2 Length = 122 | Back alignment and structure |
|
| >pdb|3G0L|A Chain A, Crystal Structure Of Human Bromodomain Adjacent To Zinc Finger Domain 2b (Baz2b) Length = 117 | Back alignment and structure |
|
| >pdb|3G0L|A Chain A, Crystal Structure Of Human Bromodomain Adjacent To Zinc Finger Domain 2b (Baz2b) Length = 117 | Back alignment and structure |
|
| >pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402 | Back alignment and structure |
|
| >pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431 | Back alignment and structure |
|
| >pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345 | Back alignment and structure |
|
| >pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354 | Back alignment and structure |
|
| >pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form Length = 402 | Back alignment and structure |
|
| >pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420 | Back alignment and structure |
|
| >pdb|3U5M|A Chain A, Crystal Structure Of Trim33 Phd-Bromo In The Free State Length = 207 | Back alignment and structure |
|
| >pdb|3U5M|A Chain A, Crystal Structure Of Trim33 Phd-Bromo In The Free State Length = 207 | Back alignment and structure |
|
| >pdb|2WP1|A Chain A, Structure Of Brdt Bromodomain 2 Bound To An Acetylated Histone H3 Peptide Length = 126 | Back alignment and structure |
|
| >pdb|2WP1|A Chain A, Structure Of Brdt Bromodomain 2 Bound To An Acetylated Histone H3 Peptide Length = 126 | Back alignment and structure |
|
| >pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex Length = 401 | Back alignment and structure |
|
| >pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343 | Back alignment and structure |
|
| >pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343 | Back alignment and structure |
|
| >pdb|2E7N|A Chain A, Solution Structure Of The Second Bromodomain From Human Bromodomain-Containing Protein 3 Length = 117 | Back alignment and structure |
|
| >pdb|2E7N|A Chain A, Solution Structure Of The Second Bromodomain From Human Bromodomain-Containing Protein 3 Length = 117 | Back alignment and structure |
|
| >pdb|2OO1|A Chain A, Crystal Structure Of The Bromo Domain 2 Of Human Bromodomain Containing Protein 3 (Brd3) Length = 113 | Back alignment and structure |
|
| >pdb|2OO1|A Chain A, Crystal Structure Of The Bromo Domain 2 Of Human Bromodomain Containing Protein 3 (Brd3) Length = 113 | Back alignment and structure |
|
| >pdb|2R10|A Chain A, Structure Of An Acetylated Rsc4 Tandem Bromodomain Histone Chimera Length = 361 | Back alignment and structure |
|
| >pdb|2R10|A Chain A, Structure Of An Acetylated Rsc4 Tandem Bromodomain Histone Chimera Length = 361 | Back alignment and structure |
|
| >pdb|2R0V|A Chain A, Structure Of The Rsc4 Tandem Bromodomain Acetylated At K25 Length = 346 | Back alignment and structure |
|
| >pdb|2R0V|A Chain A, Structure Of The Rsc4 Tandem Bromodomain Acetylated At K25 Length = 346 | Back alignment and structure |
|
| >pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340 | Back alignment and structure |
|
| >pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351 | Back alignment and structure |
|
| >pdb|3ONI|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Brd2 In Complex With The Inhibitor Jq1 Length = 114 | Back alignment and structure |
|
| >pdb|3ONI|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Brd2 In Complex With The Inhibitor Jq1 Length = 114 | Back alignment and structure |
|
| >pdb|2DVV|A Chain A, Crystal Structure Of The Second Bromodomain Of The Human Brd2 Protein Length = 112 | Back alignment and structure |
|
| >pdb|2DVV|A Chain A, Crystal Structure Of The Second Bromodomain Of The Human Brd2 Protein Length = 112 | Back alignment and structure |
|
| >pdb|2G4A|A Chain A, Solution Structure Of A Bromodomain From Ring3 Protein Length = 116 | Back alignment and structure |
|
| >pdb|2G4A|A Chain A, Solution Structure Of A Bromodomain From Ring3 Protein Length = 116 | Back alignment and structure |
|
| >pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321 | Back alignment and structure |
|
| >pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318 | Back alignment and structure |
|
| >pdb|2I8N|A Chain A, Solution Structure Of The Second Bromodomain Of Brd4 Length = 114 | Back alignment and structure |
|
| >pdb|2I8N|A Chain A, Solution Structure Of The Second Bromodomain Of Brd4 Length = 114 | Back alignment and structure |
|
| >pdb|3LXJ|A Chain A, Crystal Structure Of The Bromodomain Of Human Aaa Domain Containing 2b (Atad2b) Length = 136 | Back alignment and structure |
|
| >pdb|3LXJ|A Chain A, Crystal Structure Of The Bromodomain Of Human Aaa Domain Containing 2b (Atad2b) Length = 136 | Back alignment and structure |
|
| >pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330 | Back alignment and structure |
|
| >pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330 | Back alignment and structure |
|
| >pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340 | Back alignment and structure |
|
| >pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317 | Back alignment and structure |
|
| >pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340 | Back alignment and structure |
|
| >pdb|3JVL|A Chain A, Crystal Structure Of Bromodomain 2 Of Mouse Brd4 Length = 120 | Back alignment and structure |
|
| >pdb|3JVL|A Chain A, Crystal Structure Of Bromodomain 2 Of Mouse Brd4 Length = 120 | Back alignment and structure |
|
| >pdb|2KTB|B Chain B, Solution Structure Of The Second Bromodomain Of Human Polybr Complex With An Acetylated Peptide From Histone 3 Length = 121 | Back alignment and structure |
|
| >pdb|2KTB|B Chain B, Solution Structure Of The Second Bromodomain Of Human Polybr Complex With An Acetylated Peptide From Histone 3 Length = 121 | Back alignment and structure |
|
| >pdb|3LJW|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Polybromo Length = 120 | Back alignment and structure |
|
| >pdb|3LJW|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Polybromo Length = 120 | Back alignment and structure |
|
| >pdb|3HMF|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Poly-Bromodomain Containing Protein 1 (Pb1) Length = 116 | Back alignment and structure |
|
| >pdb|3HMF|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Poly-Bromodomain Containing Protein 1 (Pb1) Length = 116 | Back alignment and structure |
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1915 | |||
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 3uv5_A | 265 | Transcription initiation factor TFIID subunit 1; t | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 3aad_A | 292 | Transcription initiation factor TFIID subunit 1; p | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 2r0y_A | 311 | Chromatin structure-remodeling complex protein RSC | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 2r10_A | 361 | Chromatin structure-remodeling complex protein RSC | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 100.0 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 100.0 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 99.98 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 99.98 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.98 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 99.98 | |
| 3uv5_A | 265 | Transcription initiation factor TFIID subunit 1; t | 99.97 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.97 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.97 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.97 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.97 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 99.97 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.97 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.97 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.97 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.97 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 99.97 | |
| 3aad_A | 292 | Transcription initiation factor TFIID subunit 1; p | 99.97 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.97 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.97 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.97 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.97 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 99.97 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.97 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.96 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.96 | |
| 2r0y_A | 311 | Chromatin structure-remodeling complex protein RSC | 99.96 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.96 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.96 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.96 | |
| 2r10_A | 361 | Chromatin structure-remodeling complex protein RSC | 99.96 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.96 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.96 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.96 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.95 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.95 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.95 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.95 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.95 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.95 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.95 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.94 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.94 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.94 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.94 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.94 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.94 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.94 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.93 | |
| 3q2e_A | 123 | Bromodomain and WD repeat-containing protein 1; st | 99.92 | |
| 3g0l_A | 117 | Hwalp4, bromodomain adjacent to zinc finger domain | 99.91 | |
| 3mb3_A | 135 | PH-interacting protein; PHIP, pleckstrin homology | 99.91 | |
| 3d7c_A | 112 | General control of amino acid synthesis protein 5; | 99.91 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.91 | |
| 2d9e_A | 121 | Peregrin; four-helix bundle, transcription activat | 99.91 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.91 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.91 | |
| 2i7k_A | 117 | Bromodomain-containing protein 7; helix, LEFT-hand | 99.9 | |
| 1e6i_A | 121 | Transcriptional activator GCN5; gene regulation, b | 99.9 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.9 | |
| 4alg_A | 154 | Bromodomain-containing protein 2; signaling protei | 99.9 | |
| 3q2e_A | 123 | Bromodomain and WD repeat-containing protein 1; st | 99.9 | |
| 3nxb_A | 116 | CAT eye syndrome critical region protein 2; struct | 99.9 | |
| 2dat_A | 123 | Possible global transcription activator SNF2L2; br | 99.9 | |
| 2oss_A | 127 | HUNK1 protein, bromodomain-containing protein 4; B | 99.9 | |
| 3p1f_A | 119 | CREB-binding protein; structural genomics consorti | 99.9 | |
| 3mb3_A | 135 | PH-interacting protein; PHIP, pleckstrin homology | 99.9 | |
| 3mb4_A | 124 | Protein polybromo-1; PB1, polybromo 1 isoform 1, B | 99.9 | |
| 2grc_A | 129 | Probable global transcription activator SNF2L4; br | 99.9 | |
| 2ouo_A | 130 | HUNK1 protein, bromodomain-containing protein 4; B | 99.9 | |
| 2yyn_A | 135 | Transcription intermediary factor 1-alpha; bromo d | 99.89 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.89 | |
| 3hme_A | 123 | Bromodomain-containing protein 9; BRD9, bromodomai | 99.89 | |
| 3rcw_A | 135 | Bromodomain-containing protein 1; transcription, s | 99.89 | |
| 3ljw_A | 120 | Protein polybromo-1; alpha helix, alternative spli | 99.89 | |
| 3d7c_A | 112 | General control of amino acid synthesis protein 5; | 99.89 | |
| 3mqm_A | 126 | Probable histone-lysine N-methyltransferase ASH1L; | 99.89 | |
| 3g0l_A | 117 | Hwalp4, bromodomain adjacent to zinc finger domain | 99.89 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.89 | |
| 3k2j_A | 130 | Protein polybromo-1; PB1, polybromo 1 isoform 1, B | 99.89 | |
| 3fkm_X | 166 | Signaling protein; bromodomain, malaria, structura | 99.89 | |
| 3iu5_A | 116 | Protein polybromo-1; PB1, polybromo 1 isoform 1, B | 99.89 | |
| 3jvl_A | 120 | Bromodomain-containing protein 4; alpha helical, N | 99.88 | |
| 2d9e_A | 121 | Peregrin; four-helix bundle, transcription activat | 99.88 | |
| 2grc_A | 129 | Probable global transcription activator SNF2L4; br | 99.88 | |
| 2dat_A | 123 | Possible global transcription activator SNF2L2; br | 99.88 | |
| 2i7k_A | 117 | Bromodomain-containing protein 7; helix, LEFT-hand | 99.88 | |
| 3nxb_A | 116 | CAT eye syndrome critical region protein 2; struct | 99.88 | |
| 1e6i_A | 121 | Transcriptional activator GCN5; gene regulation, b | 99.88 | |
| 4alg_A | 154 | Bromodomain-containing protein 2; signaling protei | 99.87 | |
| 3ljw_A | 120 | Protein polybromo-1; alpha helix, alternative spli | 99.87 | |
| 3uv4_A | 158 | Second bromodomain of human transcription initiat | 99.87 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.87 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.87 | |
| 3mb4_A | 124 | Protein polybromo-1; PB1, polybromo 1 isoform 1, B | 99.87 | |
| 3k2j_A | 130 | Protein polybromo-1; PB1, polybromo 1 isoform 1, B | 99.87 | |
| 3p1f_A | 119 | CREB-binding protein; structural genomics consorti | 99.87 | |
| 2oss_A | 127 | HUNK1 protein, bromodomain-containing protein 4; B | 99.87 | |
| 3mqm_A | 126 | Probable histone-lysine N-methyltransferase ASH1L; | 99.87 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.87 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.87 | |
| 3fkm_X | 166 | Signaling protein; bromodomain, malaria, structura | 99.87 | |
| 3iu5_A | 116 | Protein polybromo-1; PB1, polybromo 1 isoform 1, B | 99.87 | |
| 2yyn_A | 135 | Transcription intermediary factor 1-alpha; bromo d | 99.86 | |
| 3rcw_A | 135 | Bromodomain-containing protein 1; transcription, s | 99.86 | |
| 2ouo_A | 130 | HUNK1 protein, bromodomain-containing protein 4; B | 99.86 | |
| 3hme_A | 123 | Bromodomain-containing protein 9; BRD9, bromodomai | 99.86 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.86 | |
| 3jvl_A | 120 | Bromodomain-containing protein 4; alpha helical, N | 99.85 | |
| 2ri7_A | 174 | Nucleosome-remodeling factor subunit BPTF; zinc fi | 99.85 | |
| 3tlp_A | 150 | Protein polybromo-1; PB1, polybromo 1 isoform 1, B | 99.85 | |
| 3dai_A | 130 | ATPase family AAA domain-containing protein 2; anc | 99.85 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.85 | |
| 3uv4_A | 158 | Second bromodomain of human transcription initiat | 99.84 | |
| 3o36_A | 184 | Transcription intermediary factor 1-alpha; TRIM24, | 99.84 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.84 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.84 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.83 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.83 | |
| 2dkw_A | 131 | Hypothetical protein KIAA1240; bromodomain-like, f | 99.83 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.83 | |
| 3tlp_A | 150 | Protein polybromo-1; PB1, polybromo 1 isoform 1, B | 99.83 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.83 | |
| 2ro1_A | 189 | Transcription intermediary factor 1-beta; KAP, TIF | 99.83 | |
| 3u5n_A | 207 | E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, b | 99.82 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.82 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.82 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.82 | |
| 2ri7_A | 174 | Nucleosome-remodeling factor subunit BPTF; zinc fi | 99.82 | |
| 3dai_A | 130 | ATPase family AAA domain-containing protein 2; anc | 99.82 | |
| 3o36_A | 184 | Transcription intermediary factor 1-alpha; TRIM24, | 99.8 | |
| 2dkw_A | 131 | Hypothetical protein KIAA1240; bromodomain-like, f | 99.8 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.8 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.79 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.79 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.79 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.79 | |
| 3u5n_A | 207 | E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, b | 99.78 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.78 | |
| 2ro1_A | 189 | Transcription intermediary factor 1-beta; KAP, TIF | 99.78 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.77 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.76 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.75 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.75 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.75 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.74 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.73 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.73 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.72 | |
| 3iu6_A | 147 | Protein polybromo-1; PB1, polybromo 1 isoform 1, B | 99.71 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.7 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.7 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.69 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.66 | |
| 3iu6_A | 147 | Protein polybromo-1; PB1, polybromo 1 isoform 1, B | 99.66 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.65 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.65 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.63 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.59 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.57 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.56 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.55 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.55 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.54 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.54 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.53 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.53 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.52 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.52 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.51 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.51 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.49 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.47 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.45 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.43 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.42 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.42 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.42 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.39 | |
| 3lqh_A | 183 | Histone-lysine N-methyltransferase MLL; PHD finger | 99.39 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.38 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.37 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.36 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.35 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.35 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.35 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.32 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.31 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.3 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.27 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.26 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.25 | |
| 3lqh_A | 183 | Histone-lysine N-methyltransferase MLL; PHD finger | 99.24 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.23 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.23 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.21 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.21 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.2 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.19 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 99.17 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 99.16 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 99.14 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.11 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.1 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.08 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.08 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.06 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.03 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.01 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.0 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 98.97 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 98.95 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 98.94 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 98.94 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 98.94 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 98.93 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 98.92 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 98.91 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 98.9 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 98.85 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 98.84 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 98.84 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 98.83 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 98.8 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 98.77 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.72 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 98.67 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 98.66 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 98.64 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 98.63 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.63 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 98.62 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.6 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 98.57 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.57 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.47 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.45 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 98.43 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.41 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.26 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.2 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.17 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.15 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 98.14 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 98.07 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 98.07 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 98.07 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.03 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.02 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.0 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 97.97 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 97.95 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 97.94 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 97.92 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 97.9 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 97.89 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 97.89 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 97.88 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 97.86 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 97.86 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 97.84 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 97.79 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 97.79 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 97.77 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 97.76 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 97.76 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 97.76 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 97.75 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 97.73 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 97.73 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 97.72 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 97.7 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 97.63 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 97.6 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 97.58 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 97.56 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 97.56 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 97.54 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 97.53 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 97.53 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 97.48 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 97.46 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 97.39 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 97.3 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 97.28 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 97.23 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 97.18 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 97.18 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 97.15 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 97.12 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 97.02 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 96.83 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 96.79 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 96.76 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 96.67 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 96.58 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 96.55 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 96.5 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 96.49 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 96.46 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 96.41 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 96.26 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 96.2 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 96.19 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 96.13 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 96.12 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 95.92 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 95.89 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 95.81 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 95.8 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 95.78 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 95.7 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 95.68 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 95.65 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 95.59 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 95.34 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 95.31 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 95.18 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 95.1 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 94.75 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 94.75 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 94.67 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 94.54 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 94.43 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 94.34 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 94.19 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 93.81 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 93.57 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 92.86 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 92.66 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 92.35 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 92.17 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 92.02 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 91.28 | |
| 3b7f_A | 394 | Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop | 90.88 | |
| 3kci_A | 389 | Probable E3 ubiquitin-protein ligase HERC2; WD40, | 90.62 | |
| 2jns_A | 90 | Bromodomain-containing protein 4; ET-domain, struc | 89.51 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 89.25 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 88.47 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 88.21 | |
| 3q6k_A | 381 | 43.2 kDa salivary protein; beta propeller, binding | 86.24 | |
| 3qhy_B | 282 | Beta-lactamase inhibitory protein II; enyzme-inhib | 85.68 | |
| 3b7f_A | 394 | Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop | 85.42 | |
| 4gq2_M | 950 | Nucleoporin NUP120; beta propeller alpha helical, | 85.25 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 84.36 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 81.59 | |
| 2xtc_A | 90 | F-box-like/WD repeat-containing protein TBL1X; tra | 81.39 | |
| 4hvt_A | 711 | Ritya.17583.B, post-proline cleaving enzyme; ssgci | 80.84 | |
| 4hvt_A | 711 | Ritya.17583.B, post-proline cleaving enzyme; ssgci | 80.77 |
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-42 Score=455.11 Aligned_cols=401 Identities=15% Similarity=0.141 Sum_probs=316.8
Q ss_pred CCCeEEEecccCCceeeeEEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCC--cEEEEEeCCCCCEEEEEEeCC
Q psy9598 452 LSRSLMISSHKYSNLRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDG--KLLATLRGCSGEISDIAIDNR 529 (1915)
Q Consensus 452 ~d~~~~i~~~~~~~~~~~~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg--~~~~~l~gH~~~I~~Lafspd 529 (1915)
.++.+.+|... .......|.||.+.|+|++|+|+|++||+|+.||+|+|||+.++ .+..++.+|.+.|.+|+|+|+
T Consensus 37 ~~~~v~l~~~~--~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~d 114 (611)
T 1nr0_A 37 NGTSVYTVPVG--SLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSE 114 (611)
T ss_dssp ETTEEEEEETT--CSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTT
T ss_pred CCCEEEEecCC--CcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCC
Confidence 35688888654 33455688999999999999999999999999999999999754 456788999999999999999
Q ss_pred CCEEEEEeCC----CcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceecc
Q psy9598 530 NILLAAGTVD----KTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFH 605 (1915)
Q Consensus 530 g~~LaSgs~D----gtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~ 605 (1915)
+++|++++.+ +.|++|| ++..+..+.+|...|++++|+|++ ...|++|+.|++|++||..++...
T Consensus 115 g~~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~v~~v~f~p~~---~~~l~s~s~D~~v~lwd~~~~~~~------ 183 (611)
T 1nr0_A 115 SKRIAAVGEGRERFGHVFLFD--TGTSNGNLTGQARAMNSVDFKPSR---PFRIISGSDDNTVAIFEGPPFKFK------ 183 (611)
T ss_dssp SCEEEEEECCSSCSEEEEETT--TCCBCBCCCCCSSCEEEEEECSSS---SCEEEEEETTSCEEEEETTTBEEE------
T ss_pred CCEEEEEECCCCceeEEEEee--CCCCcceecCCCCCceEEEECCCC---CeEEEEEeCCCeEEEEECCCCeEe------
Confidence 9999999865 3677776 567778899999999999999953 247999999999999997765322
Q ss_pred CccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEec-------cCCCCeeEEEEcCCCCEE
Q psy9598 606 EPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVE-------EHSDKVDSIQWSHSHLRF 678 (1915)
Q Consensus 606 ~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~-------~h~~~V~sl~fspdg~~L 678 (1915)
..+.+|...|.+++|+|+|.+|++|+.|++|+|||+.. ...+..+. +|.+.|.+++|+|+|.+|
T Consensus 184 ------~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~---g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l 254 (611)
T 1nr0_A 184 ------STFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVD---GTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKI 254 (611)
T ss_dssp ------EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT---CCEEEECBCTTSSSCSSSSCEEEEEECTTSSEE
T ss_pred ------eeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCC---CcEeeeeccccccccccCCCEEEEEECCCCCEE
Confidence 22346788999999999999999999999999999843 33444452 799999999999999999
Q ss_pred EEEeCCCcEEEEEccCCceEEeeecccccC---------------------------CCCccccccccccccEEEEEECC
Q psy9598 679 VSGSRDGTALIWYYKCSQWRFIRLDMNTCL---------------------------PHTKETSDETNKKIKVTMVAWDA 731 (1915)
Q Consensus 679 ~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~V~~va~sp 731 (1915)
++|+.|++|+|||+.++++........... ..........+|...|++++|+|
T Consensus 255 ~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~sp 334 (611)
T 1nr0_A 255 ASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSA 334 (611)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECT
T ss_pred EEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeC
Confidence 999999999999999887654321100000 00001122346888999999999
Q ss_pred CCCEEEEEEecCCeEEEEECCCCceEEEe-eC------------------------------------------------
Q psy9598 732 SDRWVITAINFNFQIKIWDAFNGDLVQVL-KG------------------------------------------------ 762 (1915)
Q Consensus 732 dg~~L~t~s~~Dg~I~vwD~~tg~~i~~l-~g------------------------------------------------ 762 (1915)
+|.+|++++. |+.|++||+.++.+...+ .+
T Consensus 335 dg~~l~s~s~-D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~ 413 (611)
T 1nr0_A 335 DGKTLFSADA-EGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQ 413 (611)
T ss_dssp TSSEEEEEET-TSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSC
T ss_pred CCCEEEEEeC-CCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCC
Confidence 9999999998 999999999876554332 11
Q ss_pred ---------------------------------CCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeee
Q psy9598 763 ---------------------------------HTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIV 809 (1915)
Q Consensus 763 ---------------------------------H~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~ 809 (1915)
|...+.+++|+| ++.+|++|+.||+|+|||+.++.. . .+. .
T Consensus 414 ~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~sp-dg~~lasgs~D~~v~lwd~~~~~~--~-~~~--~ 487 (611)
T 1nr0_A 414 PLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSN-DKQFVAVGGQDSKVHVYKLSGASV--S-EVK--T 487 (611)
T ss_dssp EEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECT-TSCEEEEEETTSEEEEEEEETTEE--E-EEE--E
T ss_pred CcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeC-CCCEEEEeCCCCeEEEEEccCCce--e-eee--c
Confidence 234467889999 999999999999999999977543 1 111 1
Q ss_pred cCCCCcceEEEEEcCCCCEEEEEeCCCeEEEEeCCC-Cccccc--C------CCceeecCCCCeeeecC-CCccceeecc
Q psy9598 810 EGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGG-FKRPQN--I------PRELFFHTDYRTLNRPN-GLFEPTYDEV 879 (1915)
Q Consensus 810 ~~~~~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl~s-~~~~~~--l------~~~~~F~~d~~~Lv~~~-~~~~~v~D~~ 879 (1915)
..|.+.|.+++|+|||.+||+++.|+.|++|++.+ ++.... . ...+.|++|++.|+..+ .+.+.+||+.
T Consensus 488 -~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~ 566 (611)
T 1nr0_A 488 -IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMN 566 (611)
T ss_dssp -EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred -cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECC
Confidence 24668899999999999999999999999999987 544332 1 12688999999998554 4557899987
Q ss_pred cCC
Q psy9598 880 TNL 882 (1915)
Q Consensus 880 t~~ 882 (1915)
++.
T Consensus 567 ~~~ 569 (611)
T 1nr0_A 567 KPS 569 (611)
T ss_dssp CTT
T ss_pred Ccc
Confidence 653
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-41 Score=448.09 Aligned_cols=414 Identities=13% Similarity=0.120 Sum_probs=325.4
Q ss_pred CccccccCCCeEEEecccCCceeeeEEecCCCCcEEEEEEcCCCCEEEEEECC----CcEEEEECCCCcEEEEEeCCCCC
Q psy9598 445 SREYSGPLSRSLMISSHKYSNLRQHYVNLGHLSAVFCVLFDKLGEVIVTGADD----LLIKLWRARDGKLLATLRGCSGE 520 (1915)
Q Consensus 445 ~r~~tg~~d~~~~i~~~~~~~~~~~~~l~gH~~~V~~vafspdg~~LaTGs~D----g~I~IWd~~tg~~~~~l~gH~~~ 520 (1915)
...++|+.++++.+|+...........+.+|.+.|++|+|+|+|++||+++.+ +.|++|| ++..+.++.+|...
T Consensus 72 ~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~ 149 (611)
T 1nr0_A 72 YYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD--TGTSNGNLTGQARA 149 (611)
T ss_dssp SEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETT--TCCBCBCCCCCSSC
T ss_pred cEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEee--CCCCcceecCCCCC
Confidence 34668899999999987544444556788999999999999999999999875 3677777 57777889999999
Q ss_pred EEEEEEeCCCC-EEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccc
Q psy9598 521 ISDIAIDNRNI-LLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDI 599 (1915)
Q Consensus 521 I~~Lafspdg~-~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~ 599 (1915)
|++++|+|++. +|++|+.|++|++||..+++++..+.+|.+.|++++|+|+ +.+|++|+.||+|++||+.++..+
T Consensus 150 v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspd----g~~las~s~D~~i~lwd~~~g~~~ 225 (611)
T 1nr0_A 150 MNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPD----GSLFASTGGDGTIVLYNGVDGTKT 225 (611)
T ss_dssp EEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTT----SSEEEEEETTSCEEEEETTTCCEE
T ss_pred ceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCC----CCEEEEEECCCcEEEEECCCCcEe
Confidence 99999999986 6999999999999999999999999999999999999994 589999999999999999887643
Q ss_pred cceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCC---------------------------
Q psy9598 600 SKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDS--------------------------- 652 (1915)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~--------------------------- 652 (1915)
..+... .....+|...|.+++|+|+|.+|++|+.|++|+|||+.....
T Consensus 226 ~~~~~~-----~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~ 300 (611)
T 1nr0_A 226 GVFEDD-----SLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSI 300 (611)
T ss_dssp EECBCT-----TSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEE
T ss_pred eeeccc-----cccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEE
Confidence 322110 011226788999999999999999999999999999853211
Q ss_pred -------------CceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeeccc--------------
Q psy9598 653 -------------PLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMN-------------- 705 (1915)
Q Consensus 653 -------------~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~-------------- 705 (1915)
......+.+|...|.+++|+|+|.+|++|+.||+|++||+.++..........
T Consensus 301 s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~ 380 (611)
T 1nr0_A 301 SANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD 380 (611)
T ss_dssp ETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSC
T ss_pred eCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCc
Confidence 01223456899999999999999999999999999999998876543210000
Q ss_pred ----------------cc-----------CCCCccc-------------------------cccccccccEEEEEECCCC
Q psy9598 706 ----------------TC-----------LPHTKET-------------------------SDETNKKIKVTMVAWDASD 733 (1915)
Q Consensus 706 ----------------~~-----------~~~~~~~-------------------------~~~~~~~~~V~~va~spdg 733 (1915)
.. ....... .....+...+.+++|+|+|
T Consensus 381 l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg 460 (611)
T 1nr0_A 381 LFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDK 460 (611)
T ss_dssp EEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTS
T ss_pred EEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCC
Confidence 00 0000000 0000123567899999999
Q ss_pred CEEEEEEecCCeEEEEECCCCce--EEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCC-Cccccceeeeeeec
Q psy9598 734 RWVITAINFNFQIKIWDAFNGDL--VQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILS-SKQRGYKWFHNIVE 810 (1915)
Q Consensus 734 ~~L~t~s~~Dg~I~vwD~~tg~~--i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s-~~~~~~~~~~~~~~ 810 (1915)
++|++++. |+.|++||+.++.+ +.. .+|...|++|+|+| ++.+|++++.|++|++|++.+ ++. ... ...
T Consensus 461 ~~lasgs~-D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fsp-dg~~las~s~d~~v~~w~~~~~~~~--~~~---~~~ 532 (611)
T 1nr0_A 461 QFVAVGGQ-DSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSN-NGAFLVATDQSRKVIPYSVANNFEL--AHT---NSW 532 (611)
T ss_dssp CEEEEEET-TSEEEEEEEETTEEEEEEE-EECSSCEEEEEECT-TSSEEEEEETTSCEEEEEGGGTTEE--SCC---CCC
T ss_pred CEEEEeCC-CCeEEEEEccCCceeeeec-cCCCCceEEEEECC-CCCEEEEEcCCCCEEEEEcCCCCce--eee---eee
Confidence 99999998 99999999987654 334 68999999999999 999999999999999999987 433 211 012
Q ss_pred CCCCcceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcc-c-ccCC-------CceeecCCCCeee-ecCCCccceeec
Q psy9598 811 GQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGGFKR-P-QNIP-------RELFFHTDYRTLN-RPNGLFEPTYDE 878 (1915)
Q Consensus 811 ~~~~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl~s~~~-~-~~l~-------~~~~F~~d~~~Lv-~~~~~~~~v~D~ 878 (1915)
+.|.+.|.+++|+|||++||+|+.||.|+||++.++.. . ..+. ..+.|++|+. |+ ....+.+.+||+
T Consensus 533 ~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~~ 609 (611)
T 1nr0_A 533 TFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT-IVSAGQDSNIKFWNV 609 (611)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTE-EEEEETTSCEEEEEC
T ss_pred eecccceeEEEECCCCCEEEEEECCCcEEEEECCCcccccchhhccCcccCeeEEEEcCCCE-EEEecCCCCEEEEec
Confidence 33678999999999999999999999999999987652 2 2222 2578999998 55 445566789985
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-39 Score=424.08 Aligned_cols=377 Identities=24% Similarity=0.361 Sum_probs=323.7
Q ss_pred ccccccCCCeEEEecccCCceeeeEEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEE
Q psy9598 446 REYSGPLSRSLMISSHKYSNLRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIA 525 (1915)
Q Consensus 446 r~~tg~~d~~~~i~~~~~~~~~~~~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~La 525 (1915)
..++|+.++.+.+|+.. ......+.+|...|++++|+|+|.+|++|+.||.|++|+. +++++..+.+|...|++++
T Consensus 194 ~l~~~~~d~~v~~w~~~---~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~-~~~~~~~~~~~~~~v~~v~ 269 (577)
T 2ymu_A 194 TIASASDDKTVKLWNRN---GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVNGVA 269 (577)
T ss_dssp CEEEEETTSEEEEECTT---SCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECT-TSCEEEEECCCSSCEEEEE
T ss_pred EEEEEcCCCEEEEEeCC---CcEEEEEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEEecCCCCEEEEE
Confidence 35678889999999743 3456678999999999999999999999999999999996 6788999999999999999
Q ss_pred EeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceecc
Q psy9598 526 IDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFH 605 (1915)
Q Consensus 526 fspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~ 605 (1915)
|+|++.+|++++.|++|++|+. ++..+..+.+|...|++++|+|+ +.+|++++.||+|++||+.....
T Consensus 270 ~~~d~~~l~~~~~d~~i~~w~~-~~~~~~~~~~h~~~v~~~~~~~~----~~~l~t~~~d~~i~~w~~~~~~~------- 337 (577)
T 2ymu_A 270 FRPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPD----GQTIASASDDKTVKLWNRNGQHL------- 337 (577)
T ss_dssp ECTTSSEEEEEETTSCEEEEET-TSCEEEEECCCSSCEEEEEECTT----SSEEEEEETTSCEEEEETTSCEE-------
T ss_pred EcCCCCEEEEEeCCCEEEEEeC-CCcEEEEEecCCCCeEEEEECCC----CCEEEEEeCCCeEEEEeCCCCee-------
Confidence 9999999999999999999996 46788899999999999999994 58999999999999999765421
Q ss_pred CccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCC
Q psy9598 606 EPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDG 685 (1915)
Q Consensus 606 ~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG 685 (1915)
..+..|...|.+++|+|+|.+|++|+.||.|++|+.. ...+..+.+|...|.+++|+|+|.+|++++.||
T Consensus 338 ------~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~----~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~ 407 (577)
T 2ymu_A 338 ------QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN----GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDK 407 (577)
T ss_dssp ------EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT----CCEEEEEECCSSCEEEEEECTTSSCEEEEETTS
T ss_pred ------EEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCC----CCEEEEecCCCCCeEEEEECCCCCEEEEEeCCC
Confidence 1223567889999999999999999999999999962 345677889999999999999999999999999
Q ss_pred cEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCC
Q psy9598 686 TALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTN 765 (1915)
Q Consensus 686 ~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~ 765 (1915)
.|++||... +... ....|...|++++|+|++.+|++++. |+.|++||. +++++..+.+|..
T Consensus 408 ~v~~~~~~~-~~~~----------------~~~~~~~~v~~~~~s~d~~~l~~~~~-d~~v~~w~~-~~~~~~~~~~~~~ 468 (577)
T 2ymu_A 408 TVKLWNRNG-QLLQ----------------TLTGHSSSVWGVAFSPDDQTIASASD-DKTVKLWNR-NGQLLQTLTGHSS 468 (577)
T ss_dssp EEEEECTTC-CEEE----------------EEECCSSCEEEEEECTTSSEEEEEET-TSEEEEEET-TSCEEEEEECCSS
T ss_pred EEEEEeCCC-CEEE----------------EecCCCCCeEEEEECCCCCEEEEEcC-CCEEEEEEC-CCCEEEEEcCCCC
Confidence 999999643 3221 12346778999999999999999998 999999996 6788999999999
Q ss_pred CeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q psy9598 766 EVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGG 845 (1915)
Q Consensus 766 ~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl~s 845 (1915)
.|++++|+| ++.+|++++.||+|+|||. +++. +..+. .|.+.|++++|+|||++||+++.||.|+||++.
T Consensus 469 ~v~~~~~sp-d~~~las~~~d~~i~iw~~-~~~~--~~~~~-----~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~- 538 (577)
T 2ymu_A 469 SVRGVAFSP-DGQTIASASDDKTVKLWNR-NGQL--LQTLT-----GHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN- 538 (577)
T ss_dssp CEEEEEECT-TSCEEEEEETTSEEEEEET-TSCE--EEEEE-----CCSSCEEEEEECTTSSCEEEEETTSEEEEECTT-
T ss_pred CEEEEEEcC-CCCEEEEEeCCCEEEEEcC-CCCE--EEEEe-----CCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCC-
Confidence 999999999 9999999999999999996 4555 55554 466899999999999999999999999999974
Q ss_pred CcccccCCC------ceeecCCCCeeeecC-CCccceee
Q psy9598 846 FKRPQNIPR------ELFFHTDYRTLNRPN-GLFEPTYD 877 (1915)
Q Consensus 846 ~~~~~~l~~------~~~F~~d~~~Lv~~~-~~~~~v~D 877 (1915)
++++..+.. .+.|++|++.|+..+ .+.+.+||
T Consensus 539 ~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 539 GQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp SCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 555554433 588999999988544 34466886
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-39 Score=427.76 Aligned_cols=403 Identities=23% Similarity=0.375 Sum_probs=322.1
Q ss_pred eeeEEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEE
Q psy9598 467 RQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWN 546 (1915)
Q Consensus 467 ~~~~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWD 546 (1915)
+..++|.||.+.|+||+|+|||++||||+.|++|+|||. +++++.+|.+|.+.|++|+|+|++++||+|+.|++|+|||
T Consensus 7 ~e~~~L~GH~~~V~~~a~spdg~~las~~~d~~v~iWd~-~~~~~~~l~gh~~~V~~l~fspdg~~las~~~d~~i~vWd 85 (577)
T 2ymu_A 7 KERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 85 (577)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred EEeeEECCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEC-CCCEEEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence 345679999999999999999999999999999999995 8899999999999999999999999999999999999999
Q ss_pred CCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccce---------ecc------------
Q psy9598 547 LQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKT---------VFH------------ 605 (1915)
Q Consensus 547 l~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~---------~~~------------ 605 (1915)
+ ++.++..+.+|.+.|.+++|+|+ +.+|++++.|+.+++|+.......... .+.
T Consensus 86 ~-~~~~~~~~~~~~~~v~~~~~s~d----~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 160 (577)
T 2ymu_A 86 R-NGQLLQTLTGHSSSVRGVAFSPD----GQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDD 160 (577)
T ss_dssp T-TSCEEEEECCCSSCEEEEEECTT----SSEEEEEETTSCEEEEETTCCEEEEECCCSSCEEEEEECTTSSCEEEEETT
T ss_pred C-CCCEEEEEECCCCCEEEEEECCC----CCEEEEEcCCCceeecccccceeeeccCCCCceeeeeeecCCccceecccc
Confidence 6 57889999999999999999994 589999999999999997543211100 000
Q ss_pred -------CccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEE
Q psy9598 606 -------EPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRF 678 (1915)
Q Consensus 606 -------~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L 678 (1915)
...........+...|.++.|+|++.+|++|+.||.|++|+.. ...+..+.+|...|.+++|+|++.+|
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~~----~~~~~~~~~~~~~v~~~~~s~dg~~l 236 (577)
T 2ymu_A 161 KTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN----GQLLQTLTGHSSSVRGVAFSPDGQTI 236 (577)
T ss_dssp SEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT----SCEEEEEECCSSCEEEEEECTTSSCE
T ss_pred cceeccccceeeeeeccCCCcceeeeeecCCCCEEEEEcCCCEEEEEeCC----CcEEEEEecCCCCEEEEEECCCCCEE
Confidence 0001112234567889999999999999999999999999962 34567788999999999999999999
Q ss_pred EEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEE
Q psy9598 679 VSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQ 758 (1915)
Q Consensus 679 ~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~ 758 (1915)
++++.||.|++||..... .. ....|...|.+++|+|++.+|++++. |+.|++|+. +++++.
T Consensus 237 ~~~~~d~~i~~w~~~~~~-~~----------------~~~~~~~~v~~v~~~~d~~~l~~~~~-d~~i~~w~~-~~~~~~ 297 (577)
T 2ymu_A 237 ASASDDKTVKLWNRNGQL-LQ----------------TLTGHSSSVNGVAFRPDGQTIASASD-DKTVKLWNR-NGQLLQ 297 (577)
T ss_dssp EEEETTSCEEEECTTSCE-EE----------------EECCCSSCEEEEEECTTSSEEEEEET-TSCEEEEET-TSCEEE
T ss_pred EEEeCCCEEEEEeCCCCE-EE----------------EEecCCCCEEEEEEcCCCCEEEEEeC-CCEEEEEeC-CCcEEE
Confidence 999999999999865322 11 12346778999999999999999998 999999996 578889
Q ss_pred EeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEEeCCCeE
Q psy9598 759 VLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHL 838 (1915)
Q Consensus 759 ~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~dG~I 838 (1915)
.+.+|...|++++|+| ++.+|++++.||+|++||+..... ..+. .+...|.+++|+|+|.+||+++.+|.|
T Consensus 298 ~~~~h~~~v~~~~~~~-~~~~l~t~~~d~~i~~w~~~~~~~---~~~~-----~~~~~v~~~~~s~~g~~l~~~~~dg~v 368 (577)
T 2ymu_A 298 TLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWNRNGQHL---QTLT-----GHSSSVWGVAFSPDGQTIASASDDKTV 368 (577)
T ss_dssp EECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTSCEE---EEEC-----CCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred EEecCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeCCCCee---EEEe-----CCCCCEEEEEECCCCCEEEEEeCCCEE
Confidence 9999999999999999 999999999999999999865433 2222 456789999999999999999999999
Q ss_pred EEEeCCCCcccccCC------CceeecCCCCeeeec-CCCccceeecccCCCCCcCCCCcccCCCCCCCCCCCcccccC
Q psy9598 839 LVYGLGGFKRPQNIP------RELFFHTDYRTLNRP-NGLFEPTYDEVTNLPPHLMPPPFLVDLNGTPYPPEVQRLVPG 910 (1915)
Q Consensus 839 ~Iwdl~s~~~~~~l~------~~~~F~~d~~~Lv~~-~~~~~~v~D~~t~~~p~~~~~pfl~~~~G~~ypp~~Q~lv~G 910 (1915)
++|+... ..+..+. ..+.|++|++.|+.. ..+.+.+||.... ....+..+ .-.+.+..|+|+.+.|+.|
T Consensus 369 ~~~~~~~-~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~~-~~~~~~~~-~~~v~~~~~s~d~~~l~~~ 444 (577)
T 2ymu_A 369 KLWNRNG-QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQ-LLQTLTGH-SSSVWGVAFSPDDQTIASA 444 (577)
T ss_dssp EEEETTC-CEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTCC-EEEEEECC-SSCEEEEEECTTSSEEEEE
T ss_pred EEEcCCC-CEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCC-EEEEecCC-CCCeEEEEECCCCCEEEEE
Confidence 9999653 3333332 267899999988854 3455779985322 11111000 0012223556777777654
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-39 Score=462.67 Aligned_cols=431 Identities=19% Similarity=0.272 Sum_probs=354.4
Q ss_pred CccccccCCCeEEEecccCCceeeeEEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEE
Q psy9598 445 SREYSGPLSRSLMISSHKYSNLRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDI 524 (1915)
Q Consensus 445 ~r~~tg~~d~~~~i~~~~~~~~~~~~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~L 524 (1915)
...++|+.++.+.+|+... ......+.+|.+.|+|++|+|+|++||+|+.||.|+|||+.+++++.++.+|...|.++
T Consensus 628 ~~l~s~~~d~~i~vw~~~~--~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~ 705 (1249)
T 3sfz_A 628 QRIASCGADKTLQVFKAET--GEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCC 705 (1249)
T ss_dssp SEEEEEETTSCEEEEETTT--CCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred CEEEEEeCCCeEEEEECCC--CCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEE
Confidence 3456788999999997644 34566889999999999999999999999999999999999999999999999999999
Q ss_pred EEeC--CCCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccce
Q psy9598 525 AIDN--RNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKT 602 (1915)
Q Consensus 525 afsp--dg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~ 602 (1915)
+|++ ++.+|++|+.|++|++||+.++.++..+.+|.+.|++++|+|+ +.+|++|+.||+|++||+.++......
T Consensus 706 ~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~----~~~l~s~s~dg~v~vwd~~~~~~~~~~ 781 (1249)
T 3sfz_A 706 HFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPD----DELLASCSADGTLRLWDVRSANERKSI 781 (1249)
T ss_dssp EECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSS----TTEEEEEESSSEEEEEEGGGTEEEEEE
T ss_pred EEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecC----CCEEEEEECCCeEEEEeCCCCccccee
Confidence 9999 5669999999999999999999999999999999999999994 489999999999999999776432211
Q ss_pred eccC----------------------------------------------------------------------------
Q psy9598 603 VFHE---------------------------------------------------------------------------- 606 (1915)
Q Consensus 603 ~~~~---------------------------------------------------------------------------- 606 (1915)
....
T Consensus 782 ~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d 861 (1249)
T 3sfz_A 782 NVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQ 861 (1249)
T ss_dssp ECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSS
T ss_pred cccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCC
Confidence 1000
Q ss_pred ---------ccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCC---------------------------
Q psy9598 607 ---------PVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGV--------------------------- 650 (1915)
Q Consensus 607 ---------~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~--------------------------- 650 (1915)
.......+.+|...|.+++|+|+|.+|++|+.||.|++|++...
T Consensus 862 g~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 941 (1249)
T 3sfz_A 862 YCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVD 941 (1249)
T ss_dssp SCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEE
T ss_pred CeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEec
Confidence 00001123567788999999999999999999999999985310
Q ss_pred -------------------------------------------------CCCceeEEeccCCCCeeEEEEcCCCCEEEEE
Q psy9598 651 -------------------------------------------------DSPLGILEVEEHSDKVDSIQWSHSHLRFVSG 681 (1915)
Q Consensus 651 -------------------------------------------------~~~~~i~~l~~h~~~V~sl~fspdg~~L~sg 681 (1915)
.....+..+.+|...|.+++|+|+|.+|++|
T Consensus 942 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~ 1021 (1249)
T 3sfz_A 942 NIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISS 1021 (1249)
T ss_dssp SSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEE
T ss_pred CCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEE
Confidence 0122334456799999999999999999999
Q ss_pred eCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEee
Q psy9598 682 SRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLK 761 (1915)
Q Consensus 682 s~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~ 761 (1915)
+.||.|++||+.++.... ...+...|.+++|++++ .+++++. ||.|++||+.+++++..+.
T Consensus 1022 ~~dg~i~vwd~~~~~~~~-----------------~~~~~~~v~~~~~~~~~-~l~~~~~-dg~v~vwd~~~~~~~~~~~ 1082 (1249)
T 3sfz_A 1022 SEDSVIQVWNWQTGDYVF-----------------LQAHQETVKDFRLLQDS-RLLSWSF-DGTVKVWNVITGRIERDFT 1082 (1249)
T ss_dssp CSSSBEEEEETTTTEEEC-----------------CBCCSSCEEEEEECSSS-EEEEEES-SSEEEEEETTTTCCCEEEE
T ss_pred cCCCEEEEEECCCCceEE-----------------EecCCCcEEEEEEcCCC-cEEEEEC-CCcEEEEECCCCceeEEEc
Confidence 999999999999876432 22467889999999966 4566776 9999999999999999999
Q ss_pred CCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEEeCCCeEEEE
Q psy9598 762 GHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVY 841 (1915)
Q Consensus 762 gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~dG~I~Iw 841 (1915)
+|.+.|++++|+| ++.+|++|+.||+|+|||+.++.+ +..+. .|.+.|++++|+|+|.+||+|+.||.|+||
T Consensus 1083 ~~~~~v~~~~~s~-d~~~l~s~s~d~~v~iwd~~~~~~--~~~l~-----~h~~~v~~~~~s~dg~~lat~~~dg~i~vw 1154 (1249)
T 3sfz_A 1083 CHQGTVLSCAISS-DATKFSSTSADKTAKIWSFDLLSP--LHELK-----GHNGCVRCSAFSLDGILLATGDDNGEIRIW 1154 (1249)
T ss_dssp CCSSCCCCEEECS-SSSSCEEECCSSCCCEECSSSSSC--SBCCC-----CCSSCEEEEEECSSSSEEEEEETTSCCCEE
T ss_pred ccCCcEEEEEECC-CCCEEEEEcCCCcEEEEECCCcce--eeeec-----cCCCcEEEEEECCCCCEEEEEeCCCEEEEE
Confidence 9999999999999 999999999999999999999887 55444 567899999999999999999999999999
Q ss_pred eCCCCcccccC---------------CCceeecCCCCeeeecCCCccceeecccCCCCCcCCCCcccCCCCCCCCCCCcc
Q psy9598 842 GLGGFKRPQNI---------------PRELFFHTDYRTLNRPNGLFEPTYDEVTNLPPHLMPPPFLVDLNGTPYPPEVQR 906 (1915)
Q Consensus 842 dl~s~~~~~~l---------------~~~~~F~~d~~~Lv~~~~~~~~v~D~~t~~~p~~~~~pfl~~~~G~~ypp~~Q~ 906 (1915)
++.++..+..+ ...+.|++|+..++... +.+.+||..++........+ ...+....++|++..
T Consensus 1155 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~-g~v~vwd~~~g~~~~~~~~~-~~~i~~~~~s~dg~~ 1232 (1249)
T 3sfz_A 1155 NVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG-GYLKWWNVATGDSSQTFYTN-GTNLKKIHVSPDFRT 1232 (1249)
T ss_dssp ESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEES-SSEEEBCSSSCBCCCCCCCS-SCCCCCCEECSSSCC
T ss_pred ECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEECC-CeEEEEECCCCceeeeeecc-CCcccEEEECCCCCE
Confidence 99998877655 23688999999998665 66789999887654432211 112445566777777
Q ss_pred cccC
Q psy9598 907 LVPG 910 (1915)
Q Consensus 907 lv~G 910 (1915)
|+.|
T Consensus 1233 l~~~ 1236 (1249)
T 3sfz_A 1233 YVTV 1236 (1249)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 7654
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-39 Score=406.34 Aligned_cols=288 Identities=24% Similarity=0.429 Sum_probs=263.8
Q ss_pred EEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCC
Q psy9598 470 YVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQT 549 (1915)
Q Consensus 470 ~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~t 549 (1915)
..+.||.++|+|++|+|++.+||+|+.||+|+|||+.++.++.++.+|.+.|++|+|++++.+|++|+.|++|+|||+.+
T Consensus 102 ~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~ 181 (410)
T 1vyh_C 102 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQG 181 (410)
T ss_dssp CEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTS
T ss_pred EeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCC
Q psy9598 550 LAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPG 629 (1915)
Q Consensus 550 g~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspd 629 (1915)
+.++..+.+|...|++++|+|+ +.+|++|+.|++|++||+.++..+.. +.+|...|.++.|+++
T Consensus 182 ~~~~~~~~~h~~~V~~v~~~p~----~~~l~s~s~D~~i~~wd~~~~~~~~~------------~~~h~~~v~~~~~~~~ 245 (410)
T 1vyh_C 182 FECIRTMHGHDHNVSSVSIMPN----GDHIVSASRDKTIKMWEVQTGYCVKT------------FTGHREWVRMVRPNQD 245 (410)
T ss_dssp SCEEECCCCCSSCEEEEEECSS----SSEEEEEETTSEEEEEETTTCCEEEE------------EECCSSCEEEEEECTT
T ss_pred CceeEEEcCCCCCEEEEEEeCC----CCEEEEEeCCCeEEEEECCCCcEEEE------------EeCCCccEEEEEECCC
Confidence 9999999999999999999994 48999999999999999988764332 2356788999999999
Q ss_pred CcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCC--------------------CCEEEEEeCCCcEEE
Q psy9598 630 GLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHS--------------------HLRFVSGSRDGTALI 689 (1915)
Q Consensus 630 g~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspd--------------------g~~L~sgs~DG~I~I 689 (1915)
|.+|++|+.||.|++||+. .......+.+|...|.+++|+|+ |.+|++|+.||+|++
T Consensus 246 g~~l~s~s~D~~v~vwd~~---~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~i 322 (410)
T 1vyh_C 246 GTLIASCSNDQTVRVWVVA---TKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKM 322 (410)
T ss_dssp SSEEEEEETTSCEEEEETT---TCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEE
T ss_pred CCEEEEEcCCCeEEEEECC---CCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEE
Confidence 9999999999999999994 34567778899999999999996 678999999999999
Q ss_pred EEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCCCeEE
Q psy9598 690 WYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFV 769 (1915)
Q Consensus 690 WDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~s 769 (1915)
||+.++.+... ..+|...|.+++|+|+|.+|++++. ||.|+|||+.+++++..+.+|...|++
T Consensus 323 wd~~~~~~~~~----------------~~~h~~~v~~v~~~~~g~~l~s~s~-D~~i~vwd~~~~~~~~~~~~h~~~v~~ 385 (410)
T 1vyh_C 323 WDVSTGMCLMT----------------LVGHDNWVRGVLFHSGGKFILSCAD-DKTLRVWDYKNKRCMKTLNAHEHFVTS 385 (410)
T ss_dssp EETTTTEEEEE----------------EECCSSCEEEEEECSSSSCEEEEET-TTEEEEECCTTSCCCEEEECCSSCEEE
T ss_pred EECCCCceEEE----------------EECCCCcEEEEEEcCCCCEEEEEeC-CCeEEEEECCCCceEEEEcCCCCcEEE
Confidence 99998875432 2346778999999999999999998 999999999999999999999999999
Q ss_pred EEEccCCCCEEEEEecCceEEEEEC
Q psy9598 770 LESHPFDSRVLLSAGHDGLIIIWDI 794 (1915)
Q Consensus 770 l~~sp~dg~~LaSgs~DG~I~IWdl 794 (1915)
++|+| ++.+|+||+.||+|+||++
T Consensus 386 l~~~~-~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 386 LDFHK-TAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp EEECS-SSSCEEEEETTSEEEEEC-
T ss_pred EEEcC-CCCEEEEEeCCCcEEEEeC
Confidence 99999 9999999999999999986
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-38 Score=385.72 Aligned_cols=292 Identities=20% Similarity=0.360 Sum_probs=261.1
Q ss_pred eeeeEEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEE
Q psy9598 466 LRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIW 545 (1915)
Q Consensus 466 ~~~~~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVW 545 (1915)
+....+|.||.+.|++++|+|+|++|++|+.||+|+|||+.++..+..+.+|...|.+++|+|++.+|++|+.|+.|+||
T Consensus 45 ~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw 124 (340)
T 1got_B 45 MRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIY 124 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEE
T ss_pred chhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 34456899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCC----ceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCce
Q psy9598 546 NLQTL----APISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHI 621 (1915)
Q Consensus 546 Dl~tg----~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V 621 (1915)
++.++ .....+.+|.+.|.++.|++. ..|++++.||+|++||+.++..+.. +.+|...|
T Consensus 125 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-----~~l~s~s~d~~i~~wd~~~~~~~~~------------~~~h~~~v 187 (340)
T 1got_B 125 NLKTREGNVRVSRELAGHTGYLSCCRFLDD-----NQIVTSSGDTTCALWDIETGQQTTT------------FTGHTGDV 187 (340)
T ss_dssp ETTTCSBSCEEEEEEECCSSCEEEEEEEET-----TEEEEEETTSCEEEEETTTTEEEEE------------ECCCSSCE
T ss_pred ECccCCCcceeEEEecCCCccEEEEEECCC-----CcEEEEECCCcEEEEECCCCcEEEE------------EcCCCCce
Confidence 99875 356678899999999999884 3599999999999999988754322 33567899
Q ss_pred EEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEee
Q psy9598 622 LCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIR 701 (1915)
Q Consensus 622 ~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~ 701 (1915)
.+++|+|++.+|++|+.||.|++||+. ....+..+.+|...|.+++|+|++.+|++|+.||+|+|||++++......
T Consensus 188 ~~~~~~~~~~~l~sg~~d~~v~~wd~~---~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~ 264 (340)
T 1got_B 188 MSLSLAPDTRLFVSGACDASAKLWDVR---EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTY 264 (340)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETT---TCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred EEEEECCCCCEEEEEeCCCcEEEEECC---CCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEE
Confidence 999999999999999999999999994 44567788999999999999999999999999999999999987644321
Q ss_pred ecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEE
Q psy9598 702 LDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLL 781 (1915)
Q Consensus 702 ~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~La 781 (1915)
. ...+...|.+++|+|+|.+|++++. ||.|++||+.++..+..+.+|.+.|++++|+| ++.+|+
T Consensus 265 ~--------------~~~~~~~v~~~~~s~~g~~l~~g~~-d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~-dg~~l~ 328 (340)
T 1got_B 265 S--------------HDNIICGITSVSFSKSGRLLLAGYD-DFNCNVWDALKADRAGVLAGHDNRVSCLGVTD-DGMAVA 328 (340)
T ss_dssp C--------------CTTCCSCEEEEEECTTSSEEEEEET-TSEEEEEETTTCCEEEEEECCSSCEEEEEECT-TSSCEE
T ss_pred c--------------cCCcccceEEEEECCCCCEEEEECC-CCeEEEEEcccCcEeeEeecCCCcEEEEEEcC-CCCEEE
Confidence 1 1123456999999999999999998 99999999999999999999999999999999 999999
Q ss_pred EEecCceEEEEE
Q psy9598 782 SAGHDGLIIIWD 793 (1915)
Q Consensus 782 Sgs~DG~I~IWd 793 (1915)
||+.||+|+|||
T Consensus 329 s~s~D~~i~iWd 340 (340)
T 1got_B 329 TGSWDSFLKIWN 340 (340)
T ss_dssp EEETTSCEEEEC
T ss_pred EEcCCccEEecC
Confidence 999999999996
|
| >3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-40 Score=387.57 Aligned_cols=228 Identities=24% Similarity=0.400 Sum_probs=192.2
Q ss_pred HHHHHHHHHHHHhcCCCccCCCCCCCCCCCCCccccccCCCCCHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhhcCCC
Q psy9598 1373 ATCEKIITGLEEVMGLSVAEPFLVPVDISQYPAYAYVVEYPVDLTTLRARFQNRFYRRITSAQFDVRYLAANAEKFNEPH 1452 (1915)
Q Consensus 1373 ~~~~~i~~~~~~~~~~~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~tI~~rl~~~~Y~~~~~~~~D~~l~~~Na~~yN~~~ 1452 (1915)
+....+..+|..+..+..+++|..||++..+|+||.+|++||||+||++||++|.|+++++|.+||+|||+||.+||+++
T Consensus 14 ~l~~~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~ 93 (265)
T 3uv5_A 14 TLSSILESIINDMRDLPNTYPFHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYNGPK 93 (265)
T ss_dssp HHHHHHHHHHHHHHTSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHcCCCchhhhCCCChhhcCCHHHHhCCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHhhhhhcCCCC
Confidence 33455666777778899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCCCCccchhhhhcccccCCCChhhhhhhhhhhccccCCcchhhhhHHHhhhhhcCCchh
Q psy9598 1453 SNIVKYARIITDLLLRIIKEPNPVDVPVVYHELLQNYETSSSEEEEEEDSKSRQRRVRPTAVTRAQREAMNQKKLKRPFN 1532 (1915)
Q Consensus 1453 s~i~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1532 (1915)
|.|+++|+.|.++|.+.+++... ..... + +...+... ......
T Consensus 94 s~i~~~A~~l~~~~~~~~~~~~~-----~~~~~-------------e-------k~i~p~~d------------d~~~~~ 136 (265)
T 3uv5_A 94 HSLTQISQSMLDLCDEKLKEKED-----KLARL-------------E-------KAINPLLD------------DDDQVA 136 (265)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTHH-----HHHHH-------------H-------HHHSTTTT------------CHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHhh-----hhhhh-------------h-------hhhhhccc------------cchhhH
Confidence 99999999999999998886210 00000 0 00000000 000123
Q ss_pred hHHHHHHHHHH-HHcCCCCCCCCCCCCCCCCCCccccccCccchhhHHhhhcCCCCCCHHHHHHHHHHHHHHhhhhcCCC
Q psy9598 1533 WKNECREVLET-LWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQNK 1611 (1915)
Q Consensus 1533 ~~~~~~~ll~~-l~~~~~s~~F~~pv~~~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~Dv~lif~Na~~yN~~~ 1611 (1915)
|...|..++.. |+.+++++||+.||+...+||||++|++||||+||++||.+|.|.++++|..||+|||.||++||+++
T Consensus 137 ~~~il~~i~~~~l~~~~~~~~F~~pv~~~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~lif~Na~~yN~~~ 216 (265)
T 3uv5_A 137 FSFILDNIVTQKMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPE 216 (265)
T ss_dssp HHHHHHHHHHHTTTTSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHHHHHhhhhhHHHhCCCChhHhCcHHHHhCCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 44556666654 77899999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy9598 1612 RSKIYIMTTRLSEFAEEHLRRLTVRWN 1638 (1915)
Q Consensus 1612 ~s~i~~~a~~l~~~f~~~~~~~~~~~~ 1638 (1915)
|.||.+|..|+++|+++++++...+.
T Consensus 217 -s~~~~~A~~l~~~~~~~~~~~~~~~~ 242 (265)
T 3uv5_A 217 -SQYTKTAQEIVNVCYQTLTEYDEHLT 242 (265)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred -CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999887644
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-37 Score=380.98 Aligned_cols=289 Identities=22% Similarity=0.337 Sum_probs=258.8
Q ss_pred eEEecCCCCcEEEEEEcCC----CCEEEEEECCCcEEEEECCCCcE--EEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcE
Q psy9598 469 HYVNLGHLSAVFCVLFDKL----GEVIVTGADDLLIKLWRARDGKL--LATLRGCSGEISDIAIDNRNILLAAGTVDKTI 542 (1915)
Q Consensus 469 ~~~l~gH~~~V~~vafspd----g~~LaTGs~Dg~I~IWd~~tg~~--~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtI 542 (1915)
...+.+|.+.|+||+|+++ +.+||||+.|++|+||++.++.. ...+.+|...|.+++|++++.+|++|+.|++|
T Consensus 25 ~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i 104 (321)
T 3ow8_A 25 FKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHI 104 (321)
T ss_dssp EEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEE
T ss_pred eeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcE
Confidence 3567899999999999874 67999999999999999987754 45789999999999999999999999999999
Q ss_pred EEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceE
Q psy9598 543 RIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHIL 622 (1915)
Q Consensus 543 rVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~ 622 (1915)
+|||+.++.++..+..|...+.+++|+|+ +.+|++|+.||.|++|++.++.....+ ..+...|.
T Consensus 105 ~lWd~~~~~~~~~~~~~~~~~~~~~~spd----g~~l~~g~~dg~v~i~~~~~~~~~~~~------------~~~~~~v~ 168 (321)
T 3ow8_A 105 RLWDLENGKQIKSIDAGPVDAWTLAFSPD----SQYLATGTHVGKVNIFGVESGKKEYSL------------DTRGKFIL 168 (321)
T ss_dssp EEEETTTTEEEEEEECCTTCCCCEEECTT----SSEEEEECTTSEEEEEETTTCSEEEEE------------ECSSSCEE
T ss_pred EEEECCCCCEEEEEeCCCccEEEEEECCC----CCEEEEEcCCCcEEEEEcCCCceeEEe------------cCCCceEE
Confidence 99999999999999999999999999994 589999999999999999887543222 23457799
Q ss_pred EEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeee
Q psy9598 623 CSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRL 702 (1915)
Q Consensus 623 ~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~ 702 (1915)
+++|+|+|.+|++|+.||.|+|||+. ....+..+.+|...|.+++|+|++.+|++|+.||+|+|||+.++.....
T Consensus 169 ~~~~spdg~~lasg~~dg~i~iwd~~---~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~-- 243 (321)
T 3ow8_A 169 SIAYSPDGKYLASGAIDGIINIFDIA---TGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGT-- 243 (321)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETT---TTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEE--
T ss_pred EEEECCCCCEEEEEcCCCeEEEEECC---CCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEE--
Confidence 99999999999999999999999994 4466778899999999999999999999999999999999988764332
Q ss_pred cccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEE
Q psy9598 703 DMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLS 782 (1915)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaS 782 (1915)
..+|...|.+++|+|++.+|++++. |+.|+|||+.++.++..+.+|...|++++|+| ++.+|++
T Consensus 244 --------------~~~h~~~v~~~~~sp~~~~l~s~s~-D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~-~g~~l~s 307 (321)
T 3ow8_A 244 --------------LSGHASWVLNVAFCPDDTHFVSSSS-DKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNG-NGSKIVS 307 (321)
T ss_dssp --------------ECCCSSCEEEEEECTTSSEEEEEET-TSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEE
T ss_pred --------------EcCCCCceEEEEECCCCCEEEEEeC-CCcEEEEeCCCCEEEEEEcCCCCcEEEEEECC-CCCEEEE
Confidence 2347788999999999999999998 99999999999999999999999999999999 9999999
Q ss_pred EecCceEEEEEC
Q psy9598 783 AGHDGLIIIWDI 794 (1915)
Q Consensus 783 gs~DG~I~IWdl 794 (1915)
|+.||+|+|||+
T Consensus 308 ~~~d~~i~vwd~ 319 (321)
T 3ow8_A 308 VGDDQEIHIYDC 319 (321)
T ss_dssp EETTCCEEEEEC
T ss_pred EeCCCeEEEEeC
Confidence 999999999996
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-38 Score=394.28 Aligned_cols=312 Identities=21% Similarity=0.284 Sum_probs=267.3
Q ss_pred ceeeeEEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEE
Q psy9598 465 NLRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRI 544 (1915)
Q Consensus 465 ~~~~~~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrV 544 (1915)
.+...++|.||.+.|+||+|+|+|.+||||+.||+|+|||+.++..+..+.+|...|.+++|+|+|.+|++|+.|+.|+|
T Consensus 55 ~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~i 134 (380)
T 3iz6_a 55 DLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSI 134 (380)
T ss_dssp CCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEE
T ss_pred eeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEE
Confidence 45566789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCCCc-------eEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCC
Q psy9598 545 WNLQTLA-------PISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPG 617 (1915)
Q Consensus 545 WDl~tg~-------~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~ 617 (1915)
|++.+.. ....+.+|.+.|.++.|+|. +...|++|+.|++|++||+.++..+..+... ...+|
T Consensus 135 w~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~---~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~-------~~~~h 204 (380)
T 3iz6_a 135 FNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPD---QETRLITGSGDQTCVLWDVTTGQRISIFGSE-------FPSGH 204 (380)
T ss_dssp EECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSS---SSSCEEEECTTSCEEEECTTTCCEEEEECCC-------SSSSC
T ss_pred EECCCCccccCCccceeeccCCCcceEEEEEecC---CCCEEEEECCCCcEEEEEcCCCcEEEEeecc-------cCCCC
Confidence 9997532 34567899999999999984 3468999999999999999988654332211 12357
Q ss_pred CCceEEEEECC-CCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCc
Q psy9598 618 NAHILCSSFSP-GGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQ 696 (1915)
Q Consensus 618 ~~~V~~l~fsp-dg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~ 696 (1915)
...|.+++|++ ++.+|++|+.||.|++||++.. ...+..+.+|.+.|.+|+|+|++.+|++|+.||+|+|||++++.
T Consensus 205 ~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~--~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~ 282 (380)
T 3iz6_a 205 TADVLSLSINSLNANMFISGSCDTTVRLWDLRIT--SRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGH 282 (380)
T ss_dssp CSCEEEEEECSSSCCEEEEEETTSCEEEEETTTT--CCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTE
T ss_pred ccCeEEEEeecCCCCEEEEEECCCeEEEEECCCC--CcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCc
Confidence 78999999987 8899999999999999998532 24466788999999999999999999999999999999999987
Q ss_pred eEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEe----eCCCCCeEEEEE
Q psy9598 697 WRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVL----KGHTNEVFVLES 772 (1915)
Q Consensus 697 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l----~gH~~~V~sl~~ 772 (1915)
......... .....+...|++++|+|+|.+|++++. ||.|++||+.+++.+..+ .+|.+.|++++|
T Consensus 283 ~~~~~~~~~---------~~~~~~~~~v~~~~~s~~g~~l~~g~~-dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~ 352 (380)
T 3iz6_a 283 QLQVYNREP---------DRNDNELPIVTSVAFSISGRLLFAGYS-NGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGL 352 (380)
T ss_dssp EEEEECCCC---------SSSCCSSCSCSEEEECSSSSEEEEECT-TSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEE
T ss_pred EEEEecccc---------cccccccCceEEEEECCCCCEEEEEEC-CCCEEEEECCCCceEEEEecccCCCCCceEEEEE
Confidence 654332111 011123345889999999999999988 999999999999988887 689999999999
Q ss_pred ccCCCCEEEEEecCceEEEEECCCCcc
Q psy9598 773 HPFDSRVLLSAGHDGLIIIWDILSSKQ 799 (1915)
Q Consensus 773 sp~dg~~LaSgs~DG~I~IWdl~s~~~ 799 (1915)
+| ++.+|+|||.||+|+||++...+.
T Consensus 353 s~-dg~~l~sgs~D~~i~iW~~~~~~~ 378 (380)
T 3iz6_a 353 SS-DGSALCTGSWDKNLKIWAFSGHRK 378 (380)
T ss_dssp CS-SSSEEEEECTTSCEEEEECCSSSS
T ss_pred CC-CCCEEEEeeCCCCEEEEecCCCcc
Confidence 99 999999999999999999976543
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-37 Score=446.35 Aligned_cols=417 Identities=20% Similarity=0.271 Sum_probs=330.2
Q ss_pred eEEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECC
Q psy9598 469 HYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQ 548 (1915)
Q Consensus 469 ~~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~ 548 (1915)
...+.+|.+.|+|++|+|+|++||+|+.||+|+|||+.++..+.++.+|.+.|++++|+|++.+||+|+.||+|+|||+.
T Consensus 608 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~ 687 (1249)
T 3sfz_A 608 RLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSA 687 (1249)
T ss_dssp SEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred eEEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECC
Confidence 35778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECC
Q psy9598 549 TLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSP 628 (1915)
Q Consensus 549 tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fsp 628 (1915)
+++++..+.+|...|++++|+|.. +..++++|+.||+|++||+.++.....+ .+|...|.+++|+|
T Consensus 688 ~~~~~~~~~~~~~~v~~~~~~~~~--~~~~l~sg~~d~~v~vwd~~~~~~~~~~------------~~h~~~v~~~~~sp 753 (1249)
T 3sfz_A 688 TGKLVHTYDEHSEQVNCCHFTNKS--NHLLLATGSNDFFLKLWDLNQKECRNTM------------FGHTNSVNHCRFSP 753 (1249)
T ss_dssp TCCEEEEEECCSSCEEEEEECSSS--SCCEEEEEETTSCEEEEETTSSSEEEEE------------CCCSSCEEEEEECS
T ss_pred CCceEEEEcCCCCcEEEEEEecCC--CceEEEEEeCCCeEEEEECCCcchhhee------------cCCCCCEEEEEEec
Confidence 999999999999999999999954 5579999999999999999887543322 24456666777777
Q ss_pred CCcEEEEEeCCCeEEEEEecCC----------------------------------------------------------
Q psy9598 629 GGLFLATGSGDHHVRVYKMDGV---------------------------------------------------------- 650 (1915)
Q Consensus 629 dg~~Lasgs~Dg~I~IwDl~~~---------------------------------------------------------- 650 (1915)
++.+|++|+.||.|++||+...
T Consensus 754 ~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~ 833 (1249)
T 3sfz_A 754 DDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLA 833 (1249)
T ss_dssp STTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEE
T ss_pred CCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCcee
Confidence 7666777777777777765321
Q ss_pred ------------------------------------CCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccC
Q psy9598 651 ------------------------------------DSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKC 694 (1915)
Q Consensus 651 ------------------------------------~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~ 694 (1915)
.....+..+.+|.+.|.+++|+|+|.+|++++.||.|++|++..
T Consensus 834 ~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~ 913 (1249)
T 3sfz_A 834 EIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKK 913 (1249)
T ss_dssp EEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHH
T ss_pred EEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccc
Confidence 11223445678999999999999999999999999999999753
Q ss_pred Cce----------------------------------------E--------Eeeeccc----------cc-----CCCC
Q psy9598 695 SQW----------------------------------------R--------FIRLDMN----------TC-----LPHT 711 (1915)
Q Consensus 695 ~~~----------------------------------------~--------~~~~~~~----------~~-----~~~~ 711 (1915)
... . ....... .. ....
T Consensus 914 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~ 993 (1249)
T 3sfz_A 914 VCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNN 993 (1249)
T ss_dssp HHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTT
T ss_pred cceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCC
Confidence 100 0 0000000 00 0011
Q ss_pred ccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEE
Q psy9598 712 KETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIII 791 (1915)
Q Consensus 712 ~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~I 791 (1915)
........|...|++++|+|+|.+|++++. ||.|++||+.++..+. +.+|...|.+++|+| + ..+++++.||+|++
T Consensus 994 ~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~-dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~-~-~~l~~~~~dg~v~v 1069 (1249)
T 3sfz_A 994 RVFSSGVGHKKAVRHIQFTADGKTLISSSE-DSVIQVWNWQTGDYVF-LQAHQETVKDFRLLQ-D-SRLLSWSFDGTVKV 1069 (1249)
T ss_dssp SCEEECCCCSSCCCCEEECSSSSCEEEECS-SSBEEEEETTTTEEEC-CBCCSSCEEEEEECS-S-SEEEEEESSSEEEE
T ss_pred ceeeecccCCCceEEEEECCCCCEEEEEcC-CCEEEEEECCCCceEE-EecCCCcEEEEEEcC-C-CcEEEEECCCcEEE
Confidence 112234467888999999999999999998 9999999999988764 568999999999999 4 46889999999999
Q ss_pred EECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcccccCCC------ceeecCCCCee
Q psy9598 792 WDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGGFKRPQNIPR------ELFFHTDYRTL 865 (1915)
Q Consensus 792 Wdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl~s~~~~~~l~~------~~~F~~d~~~L 865 (1915)
||+.++.. ...+. .|.+.|.+++|+|+|.+|++++.||.|+||++.++.+...+.. .+.|++|++.+
T Consensus 1070 wd~~~~~~--~~~~~-----~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~~l 1142 (1249)
T 3sfz_A 1070 WNVITGRI--ERDFT-----CHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILL 1142 (1249)
T ss_dssp EETTTTCC--CEEEE-----CCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCCCCCSSCEEEEEECSSSSEE
T ss_pred EECCCCce--eEEEc-----ccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeeeeccCCCcEEEEEECCCCCEE
Confidence 99999988 66655 5678899999999999999999999999999999888777654 57899999988
Q ss_pred eecC-CCccceeecccCCCCCcCCCCc--------ccCCCCCCCCCCCcccccC
Q psy9598 866 NRPN-GLFEPTYDEVTNLPPHLMPPPF--------LVDLNGTPYPPEVQRLVPG 910 (1915)
Q Consensus 866 v~~~-~~~~~v~D~~t~~~p~~~~~pf--------l~~~~G~~ypp~~Q~lv~G 910 (1915)
+..+ .+.+.+||..++.......+.. .-.+.+..|+|+++.|+.|
T Consensus 1143 at~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~ 1196 (1249)
T 3sfz_A 1143 ATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSA 1196 (1249)
T ss_dssp EEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEE
T ss_pred EEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEEC
Confidence 8543 4557799999876655432111 1113344566777777654
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-37 Score=381.07 Aligned_cols=319 Identities=19% Similarity=0.260 Sum_probs=255.0
Q ss_pred ceeeeEEecCCCC-cEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEE---EEeCCCCCEEEEEEeCCCCEEEEEeCCC
Q psy9598 465 NLRQHYVNLGHLS-AVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLA---TLRGCSGEISDIAIDNRNILLAAGTVDK 540 (1915)
Q Consensus 465 ~~~~~~~l~gH~~-~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~---~l~gH~~~I~~Lafspdg~~LaSgs~Dg 540 (1915)
.+.+..+|.+|.. .|++|+|+|+|.+||+|+.||+|+|||+.++.... ...+|...|.+|+|+|++.+||+|+.|+
T Consensus 4 ~~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~ 83 (345)
T 3fm0_A 4 SLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDA 83 (345)
T ss_dssp CEEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTS
T ss_pred cEEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCC
Confidence 4567788999998 99999999999999999999999999998886432 2368999999999999999999999999
Q ss_pred cEEEEECCCC--ceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCC
Q psy9598 541 TIRIWNLQTL--APISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGN 618 (1915)
Q Consensus 541 tIrVWDl~tg--~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~ 618 (1915)
+|+||++.++ .++..+.+|.+.|++++|+|+ +.+|++|+.|++|++||+..+.... ....+..|.
T Consensus 84 ~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~----~~~l~s~s~D~~v~iwd~~~~~~~~---------~~~~~~~h~ 150 (345)
T 3fm0_A 84 TTCIWKKNQDDFECVTTLEGHENEVKSVAWAPS----GNLLATCSRDKSVWVWEVDEEDEYE---------CVSVLNSHT 150 (345)
T ss_dssp CEEEEEECCC-EEEEEEECCCSSCEEEEEECTT----SSEEEEEETTSCEEEEEECTTSCEE---------EEEEECCCC
T ss_pred cEEEEEccCCCeEEEEEccCCCCCceEEEEeCC----CCEEEEEECCCeEEEEECCCCCCeE---------EEEEecCcC
Confidence 9999999876 457889999999999999994 5899999999999999998763211 112334677
Q ss_pred CceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceE
Q psy9598 619 AHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWR 698 (1915)
Q Consensus 619 ~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~ 698 (1915)
..|.+++|+|++.+|++|+.|+.|++|++.. ........+.+|...|.+|+|+|+|.+|++|+.||+|+||++......
T Consensus 151 ~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~-~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~ 229 (345)
T 3fm0_A 151 QDVKHVVWHPSQELLASASYDDTVKLYREEE-DDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNE 229 (345)
T ss_dssp SCEEEEEECSSSSCEEEEETTSCEEEEEEET-TEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCT
T ss_pred CCeEEEEECCCCCEEEEEeCCCcEEEEEecC-CCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCC
Confidence 8999999999999999999999999999843 223455678999999999999999999999999999999997533210
Q ss_pred EeeecccccCCCCccc-cccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCc---------eEEEeeCCCCCeE
Q psy9598 699 FIRLDMNTCLPHTKET-SDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGD---------LVQVLKGHTNEVF 768 (1915)
Q Consensus 699 ~~~~~~~~~~~~~~~~-~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~---------~i~~l~gH~~~V~ 768 (1915)
.... ........... .....|...|.+++|++++..|++++. |+.|++|+...+. ....+.+|...|+
T Consensus 230 ~~~~-~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~-d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 307 (345)
T 3fm0_A 230 QGVA-CSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACG-DDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVN 307 (345)
T ss_dssp TCCC-CC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEET-TSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEE
T ss_pred ccce-eeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeC-CCeEEEEEeCCCCCcceeeEEEEeeecccccCcEe
Confidence 0000 00000000000 111236778999999999999999998 9999999986542 1233468999999
Q ss_pred EEEEccCCCCEEEEEecCceEEEEECCCCcc
Q psy9598 769 VLESHPFDSRVLLSAGHDGLIIIWDILSSKQ 799 (1915)
Q Consensus 769 sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~ 799 (1915)
+|+|+|.+..+|||||.||+|+||++.+.+.
T Consensus 308 ~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~ 338 (345)
T 3fm0_A 308 CVAWNPKEPGLLASCSDDGEVAFWKYQRPEG 338 (345)
T ss_dssp EEEECSSSTTEEEEEETTSCEEEEEECC---
T ss_pred EeEEeCCCceEEEEcCCCCcEEEEEecCCCC
Confidence 9999994346999999999999999988765
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-37 Score=378.66 Aligned_cols=292 Identities=22% Similarity=0.339 Sum_probs=259.2
Q ss_pred eeeEEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEE
Q psy9598 467 RQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWN 546 (1915)
Q Consensus 467 ~~~~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWD 546 (1915)
.....|.||.+.|+||+|+|++.+||||+.||+|+|||..++.....+..|...|.+++|+|+|.+|++|+.|+.|++|+
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~ 134 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYP 134 (354)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEE
T ss_pred EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEE
Confidence 44568899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC------ceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCc
Q psy9598 547 LQTL------APISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAH 620 (1915)
Q Consensus 547 l~tg------~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (1915)
+... .....+.+|.+.|.+++|+|. +..|++|+.||+|++||+.++..+.. +.+|...
T Consensus 135 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~----~~~l~t~s~D~~v~lwd~~~~~~~~~------------~~~h~~~ 198 (354)
T 2pbi_B 135 LTFDKNENMAAKKKSVAMHTNYLSACSFTNS----DMQILTASGDGTCALWDVESGQLLQS------------FHGHGAD 198 (354)
T ss_dssp CCCCTTCCSGGGCEEEEECSSCEEEEEECSS----SSEEEEEETTSEEEEEETTTCCEEEE------------EECCSSC
T ss_pred EeccccccccccceeeeccCCcEEEEEEeCC----CCEEEEEeCCCcEEEEeCCCCeEEEE------------EcCCCCC
Confidence 8653 346677889999999999994 48999999999999999988764332 2356788
Q ss_pred eEEEEECC--CCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceE
Q psy9598 621 ILCSSFSP--GGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWR 698 (1915)
Q Consensus 621 V~~l~fsp--dg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~ 698 (1915)
|.+++|+| +|.+|++|+.||.|++||+. ....+..+.+|...|.+++|+|++.+|++|+.||+|++||++.....
T Consensus 199 v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~---~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~ 275 (354)
T 2pbi_B 199 VLCLDLAPSETGNTFVSGGCDKKAMVWDMR---SGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREV 275 (354)
T ss_dssp EEEEEECCCSSCCEEEEEETTSCEEEEETT---TCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE
T ss_pred eEEEEEEeCCCCCEEEEEeCCCeEEEEECC---CCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEE
Confidence 99999987 57899999999999999994 34567788999999999999999999999999999999999887643
Q ss_pred EeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCC
Q psy9598 699 FIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSR 778 (1915)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~ 778 (1915)
.... ...+...+.+++|+|+|.+|++++. |+.|+|||+.++..+..+.+|.+.|++++|+| ++.
T Consensus 276 ~~~~--------------~~~~~~~~~~~~~s~~g~~l~~g~~-d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~sp-dg~ 339 (354)
T 2pbi_B 276 AIYS--------------KESIIFGASSVDFSLSGRLLFAGYN-DYTINVWDVLKGSRVSILFGHENRVSTLRVSP-DGT 339 (354)
T ss_dssp EEEC--------------CTTCCSCEEEEEECTTSSEEEEEET-TSCEEEEETTTCSEEEEECCCSSCEEEEEECT-TSS
T ss_pred EEEc--------------CCCcccceeEEEEeCCCCEEEEEEC-CCcEEEEECCCCceEEEEECCCCcEEEEEECC-CCC
Confidence 3221 1113346889999999999999998 99999999999999999999999999999999 999
Q ss_pred EEEEEecCceEEEEE
Q psy9598 779 VLLSAGHDGLIIIWD 793 (1915)
Q Consensus 779 ~LaSgs~DG~I~IWd 793 (1915)
+|+||+.||+|+||+
T Consensus 340 ~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 340 AFCSGSWDHTLRVWA 354 (354)
T ss_dssp CEEEEETTSEEEEEC
T ss_pred EEEEEcCCCCEEecC
Confidence 999999999999996
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-37 Score=369.89 Aligned_cols=296 Identities=15% Similarity=0.241 Sum_probs=256.2
Q ss_pred eeeeEEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEE
Q psy9598 466 LRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIW 545 (1915)
Q Consensus 466 ~~~~~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVW 545 (1915)
+.+.++|.+|.+.|++|+|+|+|.+|++|+.||+|+|||+.++..+..+.+|...|.+++|++++++|++|+.|++|+||
T Consensus 3 l~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vw 82 (304)
T 2ynn_A 3 LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVF 82 (304)
T ss_dssp CCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEE
T ss_pred ceeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEE
Confidence 45567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEE
Q psy9598 546 NLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSS 625 (1915)
Q Consensus 546 Dl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~ 625 (1915)
|+.++.++..+.+|.+.|++++|+|. +.+|++|+.||+|++||+.++... ...+.+|...|.|++
T Consensus 83 d~~~~~~~~~~~~h~~~v~~~~~~~~----~~~l~sgs~D~~v~lWd~~~~~~~-----------~~~~~~h~~~v~~v~ 147 (304)
T 2ynn_A 83 NYNTGEKVVDFEAHPDYIRSIAVHPT----KPYVLSGSDDLTVKLWNWENNWAL-----------EQTFEGHEHFVMCVA 147 (304)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECSS----SSEEEEEETTSCEEEEEGGGTTEE-----------EEEECCCCSCEEEEE
T ss_pred ECCCCcEEEEEeCCCCcEEEEEEcCC----CCEEEEECCCCeEEEEECCCCcch-----------hhhhcccCCcEEEEE
Confidence 99999999999999999999999995 489999999999999999876321 122346778999999
Q ss_pred ECC-CCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcC--CCCEEEEEeCCCcEEEEEccCCceEEeee
Q psy9598 626 FSP-GGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSH--SHLRFVSGSRDGTALIWYYKCSQWRFIRL 702 (1915)
Q Consensus 626 fsp-dg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fsp--dg~~L~sgs~DG~I~IWDl~~~~~~~~~~ 702 (1915)
|+| ++.+|++|+.||+|+|||+..... ......+|...|..++|++ ++.+|++|+.||+|+|||+.++.+...
T Consensus 148 ~~p~~~~~l~sgs~D~~v~iwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~-- 223 (304)
T 2ynn_A 148 FNPKDPSTFASGCLDRTVKVWSLGQSTP--NFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVAT-- 223 (304)
T ss_dssp ECTTCTTEEEEEETTSEEEEEETTCSSC--SEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEE--
T ss_pred ECCCCCCEEEEEeCCCeEEEEECCCCCc--cceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCcccee--
Confidence 999 678999999999999999953322 2223346778899999987 678999999999999999998875432
Q ss_pred cccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCC-EEE
Q psy9598 703 DMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSR-VLL 781 (1915)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~-~La 781 (1915)
..+|...|.+++|+|++.+|++++. ||.|+|||+.+++++..+..|...+++++|+|.++. +|+
T Consensus 224 --------------~~~h~~~v~~~~~~p~~~~l~s~s~-Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 288 (304)
T 2ynn_A 224 --------------LEGHMSNVSFAVFHPTLPIIISGSE-DGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIA 288 (304)
T ss_dssp --------------EECCSSCEEEEEECSSSSEEEEEET-TSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEE
T ss_pred --------------eCCCCCCEEEEEECCCCCEEEEEcC-CCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEE
Confidence 2347788999999999999999998 999999999999999999999999999999994433 477
Q ss_pred EEecCceEEEEECCC
Q psy9598 782 SAGHDGLIIIWDILS 796 (1915)
Q Consensus 782 Sgs~DG~I~IWdl~s 796 (1915)
+|+.| .+.+|++..
T Consensus 289 sg~~~-g~~~~~~~~ 302 (304)
T 2ynn_A 289 SGFDN-GFTVLSLGN 302 (304)
T ss_dssp EEETT-EEEEEECC-
T ss_pred EecCC-ceEEEEecc
Confidence 76655 567887754
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-37 Score=386.78 Aligned_cols=289 Identities=18% Similarity=0.285 Sum_probs=259.7
Q ss_pred EEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEE
Q psy9598 511 LATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGF 590 (1915)
Q Consensus 511 ~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~i 590 (1915)
...+.+|.+.|++++|+|++.+|++|+.||+|+|||+.++.....+.+|.+.|++++|+|+ +.+|++|+.||+|++
T Consensus 101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~----~~~l~sgs~D~~i~i 176 (410)
T 1vyh_C 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHS----GKLLASCSADMTIKL 176 (410)
T ss_dssp SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTT----SSEEEEEETTSCCCE
T ss_pred eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCC----CCEEEEEeCCCeEEE
Confidence 3457899999999999999999999999999999999999999999999999999999984 489999999999999
Q ss_pred EecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEE
Q psy9598 591 WKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQ 670 (1915)
Q Consensus 591 WDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~ 670 (1915)
||+.++..+. .+.+|...|.+++|+|++.+|++|+.|++|++||+. ...++..+.+|...|.+++
T Consensus 177 wd~~~~~~~~------------~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~---~~~~~~~~~~h~~~v~~~~ 241 (410)
T 1vyh_C 177 WDFQGFECIR------------TMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQ---TGYCVKTFTGHREWVRMVR 241 (410)
T ss_dssp EETTSSCEEE------------CCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETT---TCCEEEEEECCSSCEEEEE
T ss_pred EeCCCCceeE------------EEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC---CCcEEEEEeCCCccEEEEE
Confidence 9998765332 234677899999999999999999999999999994 4456778899999999999
Q ss_pred EcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCC------------------
Q psy9598 671 WSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDAS------------------ 732 (1915)
Q Consensus 671 fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spd------------------ 732 (1915)
|+++|.+|++|+.||+|++||+.++.+... ...|...|.+++|+|+
T Consensus 242 ~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~----------------~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (410)
T 1vyh_C 242 PNQDGTLIASCSNDQTVRVWVVATKECKAE----------------LREHRHVVECISWAPESSYSSISEATGSETKKSG 305 (410)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTCCEEEE----------------ECCCSSCEEEEEECCSCGGGGGGGCCSCC-----
T ss_pred ECCCCCEEEEEcCCCeEEEEECCCCceeeE----------------ecCCCceEEEEEEcCcccccchhhhccccccccC
Confidence 999999999999999999999988775432 2346778999999996
Q ss_pred --CCEEEEEEecCCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeec
Q psy9598 733 --DRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVE 810 (1915)
Q Consensus 733 --g~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~ 810 (1915)
|.+|++++. |+.|++||+.++.++..+.+|.+.|++++|+| ++.+|++|+.||+|+|||+.++++ +..+.
T Consensus 306 ~~g~~l~sgs~-D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~-~g~~l~s~s~D~~i~vwd~~~~~~--~~~~~---- 377 (410)
T 1vyh_C 306 KPGPFLLSGSR-DKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHS-GGKFILSCADDKTLRVWDYKNKRC--MKTLN---- 377 (410)
T ss_dssp --CCEEEEEET-TSEEEEEETTTTEEEEEEECCSSCEEEEEECS-SSSCEEEEETTTEEEEECCTTSCC--CEEEE----
T ss_pred CCCCEEEEEeC-CCeEEEEECCCCceEEEEECCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCce--EEEEc----
Confidence 678888888 99999999999999999999999999999999 999999999999999999998887 66654
Q ss_pred CCCCcceEEEEEcCCCCEEEEEeCCCeEEEEeC
Q psy9598 811 GQGEGALFDGKWSPDGTTCALTDSYGHLLVYGL 843 (1915)
Q Consensus 811 ~~~~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl 843 (1915)
.|...|++++|+|++.+||+|+.||.|+||++
T Consensus 378 -~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 378 -AHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp -CCSSCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred -CCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence 56789999999999999999999999999986
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-37 Score=385.44 Aligned_cols=340 Identities=16% Similarity=0.241 Sum_probs=279.1
Q ss_pred EecCCCCcEEEEEEcCCCC-EEEEEECCCcEEEEEC----CCCc------EEEEEeC----------CCCCEEEEEEeCC
Q psy9598 471 VNLGHLSAVFCVLFDKLGE-VIVTGADDLLIKLWRA----RDGK------LLATLRG----------CSGEISDIAIDNR 529 (1915)
Q Consensus 471 ~l~gH~~~V~~vafspdg~-~LaTGs~Dg~I~IWd~----~tg~------~~~~l~g----------H~~~I~~Lafspd 529 (1915)
....|.+.|+|++|+|+|. +||+|+.||.|+||++ .++. ....+.. |.+.|++|+|+|+
T Consensus 40 ~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 119 (425)
T 1r5m_A 40 KEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHD 119 (425)
T ss_dssp EEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTT
T ss_pred eeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCC
Confidence 3456779999999999999 9999999999999999 8888 5666654 7889999999999
Q ss_pred CCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccc
Q psy9598 530 NILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVM 609 (1915)
Q Consensus 530 g~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~ 609 (1915)
+.+|++|+.||.|+||| .++..+..+.+|...|.+++|+|+ +.+|++++.||.|++||+.++..+..+.......
T Consensus 120 ~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~----~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 194 (425)
T 1r5m_A 120 GNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKD----GTHIISMDVENVTILWNVISGTVMQHFELKETGG 194 (425)
T ss_dssp SSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTT----SSEEEEEETTCCEEEEETTTTEEEEEECCC----
T ss_pred CCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCC----CCEEEEEecCCeEEEEECCCCcEEEEeeccccCc
Confidence 99999999999999999 678889999999999999999994 4899999999999999998876554443321100
Q ss_pred ---cccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCc
Q psy9598 610 ---FNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGT 686 (1915)
Q Consensus 610 ---~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~ 686 (1915)
...........+.+++|++++ .+++|+.+|.|++||+.. ...+..+.+|...|.+++|+|++.+|++++.||.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~---~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~ 270 (425)
T 1r5m_A 195 SSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITE---KTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGT 270 (425)
T ss_dssp -----------CCCBSCCEEEETT-EEEEECGGGCEEEEETTC---SSCSEEECCCSSCEEEEEEETTTTEEEEEETTSC
T ss_pred cceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCC---CceeeeeccCCCceEEEEECCCCCEEEEEcCCCE
Confidence 000111122238889999986 588899999999999943 3455667899999999999999999999999999
Q ss_pred EEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCCC
Q psy9598 687 ALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNE 766 (1915)
Q Consensus 687 I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~ 766 (1915)
|++||+.++..... ...+...|.+++|+|++ +|++++. |+.|++||+.+++++..+.+|...
T Consensus 271 i~i~d~~~~~~~~~----------------~~~~~~~i~~~~~~~~~-~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~ 332 (425)
T 1r5m_A 271 LRIWHGGNGNSQNC----------------FYGHSQSIVSASWVGDD-KVISCSM-DGSVRLWSLKQNTLLALSIVDGVP 332 (425)
T ss_dssp EEEECSSSBSCSEE----------------ECCCSSCEEEEEEETTT-EEEEEET-TSEEEEEETTTTEEEEEEECTTCC
T ss_pred EEEEECCCCccceE----------------ecCCCccEEEEEECCCC-EEEEEeC-CCcEEEEECCCCcEeEecccCCcc
Confidence 99999987653321 22467789999999999 8888887 999999999999999999999999
Q ss_pred eEEEEEccCCCCEEEEEecCceEEEEECCCCc--------------------cccceeeeeeecCCCCc-ceEEEEEcCC
Q psy9598 767 VFVLESHPFDSRVLLSAGHDGLIIIWDILSSK--------------------QRGYKWFHNIVEGQGEG-ALFDGKWSPD 825 (1915)
Q Consensus 767 V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~--------------------~~~~~~~~~~~~~~~~~-~V~~vafSpd 825 (1915)
|.+++|+| ++.+|++|+.||.|+|||+.++. . +..+. ++..+ .|.+++|+|+
T Consensus 333 i~~~~~s~-~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~v~~~~~s~~ 405 (425)
T 1r5m_A 333 IFAGRISQ-DGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPL--YASYQ----SSQDNDYIFDLSWNCA 405 (425)
T ss_dssp EEEEEECT-TSSEEEEEETTSCEEEEECHHHHC--------------CEECCE--EEEEC----CTTCCCCEEEEEECTT
T ss_pred EEEEEEcC-CCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchh--hhhhc----CcccCCceEEEEccCC
Confidence 99999999 99999999999999999998776 2 23222 22223 9999999999
Q ss_pred CCEEEEEeCCCeEEEEeCC
Q psy9598 826 GTTCALTDSYGHLLVYGLG 844 (1915)
Q Consensus 826 g~~Lasg~~dG~I~Iwdl~ 844 (1915)
|.+|++++.||.|+||++.
T Consensus 406 ~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 406 GNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp SSEEEEEESSSCCEEEECC
T ss_pred CceEEEEecCceEEEEeec
Confidence 9999999999999999986
|
| >3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-39 Score=378.75 Aligned_cols=225 Identities=24% Similarity=0.410 Sum_probs=187.1
Q ss_pred HHHHHHHHHhcCCCccCCCCCCCCCCCCCccccccCCCCCHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhhcCCCCHH
Q psy9598 1376 EKIITGLEEVMGLSVAEPFLVPVDISQYPAYAYVVEYPVDLTTLRARFQNRFYRRITSAQFDVRYLAANAEKFNEPHSNI 1455 (1915)
Q Consensus 1376 ~~i~~~~~~~~~~~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~tI~~rl~~~~Y~~~~~~~~D~~l~~~Na~~yN~~~s~i 1455 (1915)
..+...|+.|..+..+++|+.||++..+|+||.+|++||||+||++||+++.|.++.+|.+||+|||+||.+||+++|.|
T Consensus 50 ~~~~~il~~l~~~~~a~~F~~pV~~~~~pdY~~iIk~PmDL~tIk~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~i 129 (292)
T 3aad_A 50 SILESIINDMRDLPNTYPFHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYNGPKHSL 129 (292)
T ss_dssp HHHHHHHHHHSSSTTCGGGSSSCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHTCSSSHH
T ss_pred HHHHHHHHHHHhCCcchhhcCCCCchhcccHHHHcCCcCCHHHHHHHhhCCCcCCHHHHHHHHHHHHHHHHHHcCCchHH
Confidence 34456677788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCccchhhhhcccccCCCChhhhhhhhhhhccccCCcchhhhhHHHhhhhhcCCchhhHH
Q psy9598 1456 VKYARIITDLLLRIIKEPNPVDVPVVYHELLQNYETSSSEEEEEEDSKSRQRRVRPTAVTRAQREAMNQKKLKRPFNWKN 1535 (1915)
Q Consensus 1456 ~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1535 (1915)
+.+|..|.++|.+.++.... .+.. ......+...... ...+..
T Consensus 130 ~~~A~~L~~~~~~~~~~~~~--------~~~~-----------------~e~~i~Pl~dd~~------------~~~~~~ 172 (292)
T 3aad_A 130 TQISQSMLDLCDEKLKEKED--------KLAR-----------------LEKAINPLLDDDD------------QVAFSF 172 (292)
T ss_dssp HHHHTHHHHTTTTTGGGSHH--------HHHH-----------------HHHTTSSSTTCHH------------HHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchh--------hhhh-----------------hhhccccccccch------------hHHHHH
Confidence 99999999999877765210 0000 0000000000000 012223
Q ss_pred HHHHHHH-HHHcCCCCCCCCCCCCCCCCCCccccccCccchhhHHhhhcCCCCCCHHHHHHHHHHHHHHhhhhcCCCCCH
Q psy9598 1536 ECREVLE-TLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQNKRSK 1614 (1915)
Q Consensus 1536 ~~~~ll~-~l~~~~~s~~F~~pv~~~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~Dv~lif~Na~~yN~~~~s~ 1614 (1915)
.+.+++. .|+.++.++||+.|||...+||||+||++||||+||++||.+|.|.++++|..||+|||.||++||+++ |.
T Consensus 173 ~l~~i~~~~l~~~~~s~~F~~pvd~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~Li~~Na~~yN~~~-s~ 251 (292)
T 3aad_A 173 ILDNIVTQKMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPE-SQ 251 (292)
T ss_dssp HHHHHHHHTGGGSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHCTT-SH
T ss_pred HHHHHhhhhhhcCcchhHHHhcccccccccHHHHcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCC-CH
Confidence 3445443 477899999999999999999999999999999999999999999999999999999999999999988 99
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q psy9598 1615 IYIMTTRLSEFAEEHLRRLTVRWN 1638 (1915)
Q Consensus 1615 i~~~a~~l~~~f~~~~~~~~~~~~ 1638 (1915)
||.+|..|+++|+++++.+...+.
T Consensus 252 i~~~A~~L~~~~~~~~~~~~~~l~ 275 (292)
T 3aad_A 252 YTKTAQEIVNVCYQTLTEYDEHLT 275 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999876554
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-36 Score=365.63 Aligned_cols=293 Identities=17% Similarity=0.287 Sum_probs=254.0
Q ss_pred ceeeeEEecCCCCcEEEEEEcCCC-CEEEEEECCCcEEEEECCC-----CcEEEEEeCCCCCEEEEEEeCCCCEEEEEeC
Q psy9598 465 NLRQHYVNLGHLSAVFCVLFDKLG-EVIVTGADDLLIKLWRARD-----GKLLATLRGCSGEISDIAIDNRNILLAAGTV 538 (1915)
Q Consensus 465 ~~~~~~~l~gH~~~V~~vafspdg-~~LaTGs~Dg~I~IWd~~t-----g~~~~~l~gH~~~I~~Lafspdg~~LaSgs~ 538 (1915)
.+.+..+|.||.+.|++|+|+|++ .+|+||+.|++|++|++.+ +.++.++.+|...|.+++|++++.+|++|+.
T Consensus 6 ~~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~ 85 (319)
T 3frx_A 6 VLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASW 85 (319)
T ss_dssp EEEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred EEEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeC
Confidence 356667899999999999999965 8999999999999999864 3467889999999999999999999999999
Q ss_pred CCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCC
Q psy9598 539 DKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGN 618 (1915)
Q Consensus 539 DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~ 618 (1915)
|++|+|||+.+++++..+.+|...|.+++|+|. +.+|++|+.||+|++||+.... + ..+.+|.
T Consensus 86 D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~----~~~l~s~s~D~~i~vwd~~~~~-~------------~~~~~h~ 148 (319)
T 3frx_A 86 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKK----ASMIISGSRDKTIKVWTIKGQC-L------------ATLLGHN 148 (319)
T ss_dssp TSEEEEEETTTTEEEEEEECCSSCEEEEEECTT----SCEEEEEETTSCEEEEETTSCE-E------------EEECCCS
T ss_pred CCEEEEEECCCCCeeEEEccCCCcEEEEEEcCC----CCEEEEEeCCCeEEEEECCCCe-E------------EEEeccC
Confidence 999999999999999999999999999999994 4899999999999999986431 1 1234677
Q ss_pred CceEEEEECCC------CcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEc
Q psy9598 619 AHILCSSFSPG------GLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYY 692 (1915)
Q Consensus 619 ~~V~~l~fspd------g~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl 692 (1915)
..|.++.|+|. +..|++|+.|+.|++||+. .......+.+|...|.+++|+|+|.+|++|+.||+|+|||+
T Consensus 149 ~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~---~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~ 225 (319)
T 3frx_A 149 DWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN---QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNL 225 (319)
T ss_dssp SCEEEEEECCC------CCEEEEEETTSCEEEEETT---TTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEET
T ss_pred CcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECC---cchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence 88999999985 4589999999999999993 34556778899999999999999999999999999999999
Q ss_pred cCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeC--------CC
Q psy9598 693 KCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKG--------HT 764 (1915)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~g--------H~ 764 (1915)
.+++...... ....|.+++|+|++.+|++++ ++.+++|++..+..+..+.. |.
T Consensus 226 ~~~~~~~~~~-----------------~~~~v~~~~~sp~~~~la~~~--~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~ 286 (319)
T 3frx_A 226 AAKKAMYTLS-----------------AQDEVFSLAFSPNRYWLAAAT--ATGIKVFSLDPQYLVDDLRPEFAGYSKAAE 286 (319)
T ss_dssp TTTEEEEEEE-----------------CCSCEEEEEECSSSSEEEEEE--TTEEEEEEETTEEEEEEECCCCTTCCGGGC
T ss_pred CCCcEEEEec-----------------CCCcEEEEEEcCCCCEEEEEc--CCCcEEEEeCcCeeeeccCccccccccCcC
Confidence 9887544221 234689999999999998876 46699999998877776643 45
Q ss_pred CCeEEEEEccCCCCEEEEEecCceEEEEECCCC
Q psy9598 765 NEVFVLESHPFDSRVLLSAGHDGLIIIWDILSS 797 (1915)
Q Consensus 765 ~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~ 797 (1915)
..|.+++|+| ++++|++|+.||.|+|||+.++
T Consensus 287 ~~v~~~~~sp-dg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 287 PHAVSLAWSA-DGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp CCEEEEEECT-TSSEEEEEETTSCEEEEEEEEC
T ss_pred cceeEEEECC-CCCEEEEeecCceEEEEEEeec
Confidence 6799999999 9999999999999999998764
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-36 Score=394.86 Aligned_cols=398 Identities=14% Similarity=0.164 Sum_probs=309.1
Q ss_pred CCeEEEecccCC--ceeeeEEecCCCCc-EEEEEEcC--CCCEEEEEECCCcEEEEECCCC--------cEEEEEeCCCC
Q psy9598 453 SRSLMISSHKYS--NLRQHYVNLGHLSA-VFCVLFDK--LGEVIVTGADDLLIKLWRARDG--------KLLATLRGCSG 519 (1915)
Q Consensus 453 d~~~~i~~~~~~--~~~~~~~l~gH~~~-V~~vafsp--dg~~LaTGs~Dg~I~IWd~~tg--------~~~~~l~gH~~ 519 (1915)
++.+.+|+.... .......+.+|.+. |+|++|+| +|++||+|+.||.|+|||+.++ .++..+.+|..
T Consensus 38 ~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~ 117 (615)
T 1pgu_A 38 GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAG 117 (615)
T ss_dssp TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSS
T ss_pred CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccc
Confidence 778899876532 12566789999999 99999999 9999999999999999999855 77888999999
Q ss_pred CEEEEEEeCCCCEEEEEeCC----CcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEeccc
Q psy9598 520 EISDIAIDNRNILLAAGTVD----KTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKL 595 (1915)
Q Consensus 520 ~I~~Lafspdg~~LaSgs~D----gtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~ 595 (1915)
.|.+++|+|++.+|++++.+ +.|++|| ++..+..+.+|...|++++|+|.+ ..+|++++.||.|++||+.+
T Consensus 118 ~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~~~---~~~l~~~~~d~~v~vwd~~~ 192 (615)
T 1pgu_A 118 PISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRINACHLKQSR---PMRSMTVGDDGSVVFYQGPP 192 (615)
T ss_dssp CEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEEEEEECSSS---SCEEEEEETTTEEEEEETTT
T ss_pred cEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCccEEEEEECCCC---CcEEEEEeCCCcEEEEeCCC
Confidence 99999999999999999987 6888888 678899999999999999999953 23899999999999999887
Q ss_pred CccccceeccCccccccccCCCCC---ceEEEEECCC-CcEEEEEeCCCeEEEEEecCCCCCceeEEe-c---cCCCCee
Q psy9598 596 DIDISKTVFHEPVMFNERIRPGNA---HILCSSFSPG-GLFLATGSGDHHVRVYKMDGVDSPLGILEV-E---EHSDKVD 667 (1915)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~~~~~~---~V~~l~fspd-g~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l-~---~h~~~V~ 667 (1915)
+..+..+ ..|.. .|.+++|+|+ +.+|++|+.||.|++||+. ....+..+ . +|...|.
T Consensus 193 ~~~~~~~------------~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~---~~~~~~~~~~~~~~~~~~v~ 257 (615)
T 1pgu_A 193 FKFSASD------------RTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGK---SGEFLKYIEDDQEPVQGGIF 257 (615)
T ss_dssp BEEEEEE------------CSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETT---TCCEEEECCBTTBCCCSCEE
T ss_pred cceeeee------------cccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECC---CCCEeEEecccccccCCceE
Confidence 6543322 23456 8999999999 9999999999999999984 34556666 5 8999999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccC--------------------C---------CCcccccc-
Q psy9598 668 SIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCL--------------------P---------HTKETSDE- 717 (1915)
Q Consensus 668 sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~--------------------~---------~~~~~~~~- 717 (1915)
+++|+ ++.+|++++.||.|++||+.+++............ . ........
T Consensus 258 ~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~ 336 (615)
T 1pgu_A 258 ALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTIS 336 (615)
T ss_dssp EEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEEC
T ss_pred EEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEe
Confidence 99999 99999999999999999998776543322110000 0 00000000
Q ss_pred --------------------------------ccccccEEEEEECCC---------------------------------
Q psy9598 718 --------------------------------TNKKIKVTMVAWDAS--------------------------------- 732 (1915)
Q Consensus 718 --------------------------------~~~~~~V~~va~spd--------------------------------- 732 (1915)
..|...|.+++| ++
T Consensus 337 ~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s 415 (615)
T 1pgu_A 337 GHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITKHEFGSQPKVASAN 415 (615)
T ss_dssp CCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEEEECSSCEEEEEEC
T ss_pred CCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEE-CCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEc
Confidence 112233333333 22
Q ss_pred ----------------------------------------CCEEEEEEecCCeEEEEECCCCceE-EEeeCCCCCeEEEE
Q psy9598 733 ----------------------------------------DRWVITAINFNFQIKIWDAFNGDLV-QVLKGHTNEVFVLE 771 (1915)
Q Consensus 733 ----------------------------------------g~~L~t~s~~Dg~I~vwD~~tg~~i-~~l~gH~~~V~sl~ 771 (1915)
+.+|++++..|+.|++||+.++... ..+.+|...|++++
T Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~ 495 (615)
T 1pgu_A 416 NDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYIS 495 (615)
T ss_dssp SSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEE
T ss_pred CCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEE
Confidence 3333333311566777776665554 66678999999999
Q ss_pred EccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcC----------CCCEEEEEeCCCeEEEE
Q psy9598 772 SHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSP----------DGTTCALTDSYGHLLVY 841 (1915)
Q Consensus 772 ~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSp----------dg~~Lasg~~dG~I~Iw 841 (1915)
|+| ++.+|++|+.||.|+|||+.+++. +..+. +.|...|++++|+| ++.+||+++.||.|+||
T Consensus 496 ~s~-~g~~l~~~~~dg~i~iw~~~~~~~--~~~~~----~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw 568 (615)
T 1pgu_A 496 ISP-SETYIAAGDVMGKILLYDLQSREV--KTSRW----AFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIY 568 (615)
T ss_dssp ECT-TSSEEEEEETTSCEEEEETTTTEE--EECCS----CCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEE
T ss_pred ECC-CCCEEEEcCCCCeEEEeeCCCCcc--eeEee----cCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEE
Confidence 999 999999999999999999998877 44432 22678999999999 99999999999999999
Q ss_pred eCCCC-cccccCCC------ceeecCCCCeee-ecCCCccceeeccc
Q psy9598 842 GLGGF-KRPQNIPR------ELFFHTDYRTLN-RPNGLFEPTYDEVT 880 (1915)
Q Consensus 842 dl~s~-~~~~~l~~------~~~F~~d~~~Lv-~~~~~~~~v~D~~t 880 (1915)
++.++ ..+..+.. .+.|++++. |+ ....+.+.+||+.+
T Consensus 569 ~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 569 SVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp ESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETTSCEEEEEEC-
T ss_pred ECCCCceechhhhcCccceEEEEEcCCCC-eEEecCCceEEEEeeec
Confidence 99987 56555543 588999999 66 44455677999764
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-36 Score=370.21 Aligned_cols=295 Identities=20% Similarity=0.335 Sum_probs=248.8
Q ss_pred eeeeEEecCCCCcEEEEEE-----cC-CCCEEEEEECCCcEEEEECCC-------CcEEEEEeCCCCCEEEEEEeCCCCE
Q psy9598 466 LRQHYVNLGHLSAVFCVLF-----DK-LGEVIVTGADDLLIKLWRARD-------GKLLATLRGCSGEISDIAIDNRNIL 532 (1915)
Q Consensus 466 ~~~~~~l~gH~~~V~~vaf-----sp-dg~~LaTGs~Dg~I~IWd~~t-------g~~~~~l~gH~~~I~~Lafspdg~~ 532 (1915)
+.+...|.||.+.|+||+| ++ ++.+||||+.|++|+|||+.+ +.+...+.+|...|++++|+|++.+
T Consensus 11 ~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~ 90 (343)
T 2xzm_R 11 VVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCF 90 (343)
T ss_dssp EEEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTE
T ss_pred eeeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCE
Confidence 4556789999999999999 76 999999999999999999874 3567889999999999999999999
Q ss_pred EEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCcccccc
Q psy9598 533 LAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNE 612 (1915)
Q Consensus 533 LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~ 612 (1915)
|++|+.|++|+|||+.++.++..+.+|.+.|++++|+|+ +.+|++|+.|++|++||+..... .. ..
T Consensus 91 l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~----~~~l~s~~~d~~i~~wd~~~~~~---~~-------~~ 156 (343)
T 2xzm_R 91 AISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPD----NRQILSAGAEREIKLWNILGECK---FS-------SA 156 (343)
T ss_dssp EEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSS----TTEEEEEETTSCEEEEESSSCEE---EE-------CC
T ss_pred EEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCC----CCEEEEEcCCCEEEEEeccCCce---ee-------ee
Confidence 999999999999999999999999999999999999994 48999999999999999873311 00 01
Q ss_pred ccCCCCCceEEEEECCCC----------cEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEe
Q psy9598 613 RIRPGNAHILCSSFSPGG----------LFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGS 682 (1915)
Q Consensus 613 ~~~~~~~~V~~l~fspdg----------~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs 682 (1915)
....|...|.+++|+|++ .+|++|+.||.|++||.. ......+.+|...|.+++|+|+|.+|++|+
T Consensus 157 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~----~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs 232 (343)
T 2xzm_R 157 EKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN----FQIRYTFKAHESNVNHLSISPNGKYIATGG 232 (343)
T ss_dssp TTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT----TEEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred cccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC----CceeEEEcCccccceEEEECCCCCEEEEEc
Confidence 123567889999999987 789999999999999952 345567889999999999999999999999
Q ss_pred CCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEE--Ee
Q psy9598 683 RDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQ--VL 760 (1915)
Q Consensus 683 ~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~--~l 760 (1915)
.||.|+|||+....... ....+...|.+++|+|++.+|+++ . |+.|++|++.++.... .+
T Consensus 233 ~dg~v~iwd~~~~~~~~----------------~~~~~~~~v~~v~~sp~~~~la~~-~-d~~v~iw~~~~~~~~~~~~~ 294 (343)
T 2xzm_R 233 KDKKLLIWDILNLTYPQ----------------REFDAGSTINQIAFNPKLQWVAVG-T-DQGVKIFNLMTQSKAPVCTI 294 (343)
T ss_dssp TTCEEEEEESSCCSSCS----------------EEEECSSCEEEEEECSSSCEEEEE-E-SSCEEEEESSSCCSCSEEEC
T ss_pred CCCeEEEEECCCCcccc----------------eeecCCCcEEEEEECCCCCEEEEE-C-CCCEEEEEeCCCCCCceEEe
Confidence 99999999985432110 001123469999999999887654 4 8889999998876543 44
Q ss_pred e-----------CCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCC
Q psy9598 761 K-----------GHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSS 797 (1915)
Q Consensus 761 ~-----------gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~ 797 (1915)
. +|...|++++|+| ++.+|++|+.||+|+||++.++
T Consensus 295 ~~~~~~~~~~~~~~~~~v~~~~~sp-~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 295 EAEPITKAEGQKGKNPQCTSLAWNA-LGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp CCCSGGGBTTBCCSCCCEEEEEECS-SSCCEEEEETTSEEEEEEEEEE
T ss_pred ecCcchhhhhhcCCCCceEEEEECC-CCCeEEEecCCceEEEEEEEcc
Confidence 3 7888999999999 9999999999999999998654
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-36 Score=367.14 Aligned_cols=292 Identities=20% Similarity=0.311 Sum_probs=254.9
Q ss_pred cEEEEEeCCCCCEEEEEEeCC----CCEEEEEeCCCcEEEEECCCCce--EEEeecCCCCeEEEEeccCccCCCcEEEEE
Q psy9598 509 KLLATLRGCSGEISDIAIDNR----NILLAAGTVDKTIRIWNLQTLAP--ISVLVGHQGIITGVNFCPLEVNGFNYLAST 582 (1915)
Q Consensus 509 ~~~~~l~gH~~~I~~Lafspd----g~~LaSgs~DgtIrVWDl~tg~~--~~~l~~h~~~V~sl~fsp~~~~d~~~L~sg 582 (1915)
.+...+.+|.+.|++|+|+++ +.+|+||+.|++|+||++.++.. ...+.+|...|.+++|++. +.+|++|
T Consensus 23 ~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~----~~~l~s~ 98 (321)
T 3ow8_A 23 ILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHT----LPIAASS 98 (321)
T ss_dssp EEEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSS----SSEEEEE
T ss_pred heeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCC----CCEEEEE
Confidence 345567899999999999874 67999999999999999987654 4568899999999999984 4899999
Q ss_pred eCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccC
Q psy9598 583 STDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEH 662 (1915)
Q Consensus 583 s~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h 662 (1915)
+.|++|++||+.++..+..+. .+...+.+++|+|++.+|++|+.+|.|++|++. .......+..|
T Consensus 99 s~D~~i~lWd~~~~~~~~~~~------------~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~---~~~~~~~~~~~ 163 (321)
T 3ow8_A 99 SLDAHIRLWDLENGKQIKSID------------AGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVE---SGKKEYSLDTR 163 (321)
T ss_dssp ETTSEEEEEETTTTEEEEEEE------------CCTTCCCCEEECTTSSEEEEECTTSEEEEEETT---TCSEEEEEECS
T ss_pred eCCCcEEEEECCCCCEEEEEe------------CCCccEEEEEECCCCCEEEEEcCCCcEEEEEcC---CCceeEEecCC
Confidence 999999999998876443332 345678899999999999999999999999994 34556778889
Q ss_pred CCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEec
Q psy9598 663 SDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINF 742 (1915)
Q Consensus 663 ~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~ 742 (1915)
...|.+++|+|+|.+|++|+.||.|++||+.+++.... ...|...|.+++|+|++.+|++++.
T Consensus 164 ~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~----------------~~~h~~~v~~l~~spd~~~l~s~s~- 226 (321)
T 3ow8_A 164 GKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHT----------------LEGHAMPIRSLTFSPDSQLLVTASD- 226 (321)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE----------------ECCCSSCCCEEEECTTSCEEEEECT-
T ss_pred CceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEE----------------EcccCCceeEEEEcCCCCEEEEEcC-
Confidence 99999999999999999999999999999998875432 2246678999999999999999998
Q ss_pred CCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEE
Q psy9598 743 NFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKW 822 (1915)
Q Consensus 743 Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vaf 822 (1915)
|+.|+|||+.++.++..+.+|...|++++|+| ++.+|++|+.||+|+|||+.++.+ +..+. .|.+.|.+++|
T Consensus 227 dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp-~~~~l~s~s~D~~v~iwd~~~~~~--~~~~~-----~h~~~v~~v~~ 298 (321)
T 3ow8_A 227 DGYIKIYDVQHANLAGTLSGHASWVLNVAFCP-DDTHFVSSSSDKSVKVWDVGTRTC--VHTFF-----DHQDQVWGVKY 298 (321)
T ss_dssp TSCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEE--EEEEC-----CCSSCEEEEEE
T ss_pred CCeEEEEECCCcceeEEEcCCCCceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCEE--EEEEc-----CCCCcEEEEEE
Confidence 99999999999999999999999999999999 999999999999999999999887 66554 46789999999
Q ss_pred cCCCCEEEEEeCCCeEEEEeCC
Q psy9598 823 SPDGTTCALTDSYGHLLVYGLG 844 (1915)
Q Consensus 823 Spdg~~Lasg~~dG~I~Iwdl~ 844 (1915)
+|+|.+|++++.||.|+|||+.
T Consensus 299 s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 299 NGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp CTTSSEEEEEETTCCEEEEECC
T ss_pred CCCCCEEEEEeCCCeEEEEeCC
Confidence 9999999999999999999963
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-35 Score=363.63 Aligned_cols=294 Identities=16% Similarity=0.215 Sum_probs=257.9
Q ss_pred CcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCe
Q psy9598 508 GKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGC 587 (1915)
Q Consensus 508 g~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~Dgt 587 (1915)
.....++.+|.+.|++++|+|++.+|++|+.||+|+|||+.++..+..+..|...|.+++|+|+ +.+|++|+.|+.
T Consensus 45 ~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~----~~~l~s~~~d~~ 120 (340)
T 1got_B 45 MRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS----GNYVACGGLDNI 120 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTT----SSEEEEEETTCE
T ss_pred chhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCC----CCEEEEEeCCCe
Confidence 3567789999999999999999999999999999999999999999999999999999999994 489999999999
Q ss_pred EEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCee
Q psy9598 588 IGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVD 667 (1915)
Q Consensus 588 I~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~ 667 (1915)
|++|++.+..... .....+.+|...|.++.|++++. |++|+.||.|++||+. ....+..+.+|.+.|.
T Consensus 121 v~iw~~~~~~~~~--------~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~---~~~~~~~~~~h~~~v~ 188 (340)
T 1got_B 121 CSIYNLKTREGNV--------RVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIE---TGQQTTTFTGHTGDVM 188 (340)
T ss_dssp EEEEETTTCSBSC--------EEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETT---TTEEEEEECCCSSCEE
T ss_pred EEEEECccCCCcc--------eeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECC---CCcEEEEEcCCCCceE
Confidence 9999997753211 11223456788999999998875 8899999999999993 4456778899999999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEE
Q psy9598 668 SIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIK 747 (1915)
Q Consensus 668 sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~ 747 (1915)
+++|+|++.+|++|+.||+|++||+.++..... ...|...|++++|+|++.+|++++. ||.|+
T Consensus 189 ~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~----------------~~~h~~~v~~v~~~p~~~~l~s~s~-d~~v~ 251 (340)
T 1got_B 189 SLSLAPDTRLFVSGACDASAKLWDVREGMCRQT----------------FTGHESDINAICFFPNGNAFATGSD-DATCR 251 (340)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTCSEEEE----------------ECCCSSCEEEEEECTTSSEEEEEET-TSCEE
T ss_pred EEEECCCCCEEEEEeCCCcEEEEECCCCeeEEE----------------EcCCcCCEEEEEEcCCCCEEEEEcC-CCcEE
Confidence 999999999999999999999999998765432 2346778999999999999999998 99999
Q ss_pred EEECCCCceEEEeeC--CCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCC
Q psy9598 748 IWDAFNGDLVQVLKG--HTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPD 825 (1915)
Q Consensus 748 vwD~~tg~~i~~l~g--H~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpd 825 (1915)
+||+.++..+..+.. +...|++++|+| ++.+|++|+.||.|+|||+.++.. +..+. .|.+.|.+++|+|+
T Consensus 252 iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~g~~d~~i~vwd~~~~~~--~~~~~-----~h~~~v~~~~~s~d 323 (340)
T 1got_B 252 LFDLRADQELMTYSHDNIICGITSVSFSK-SGRLLLAGYDDFNCNVWDALKADR--AGVLA-----GHDNRVSCLGVTDD 323 (340)
T ss_dssp EEETTTTEEEEEECCTTCCSCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCE--EEEEE-----CCSSCEEEEEECTT
T ss_pred EEECCCCcEEEEEccCCcccceEEEEECC-CCCEEEEECCCCeEEEEEcccCcE--eeEee-----cCCCcEEEEEEcCC
Confidence 999999988877753 335799999999 999999999999999999988877 55554 56789999999999
Q ss_pred CCEEEEEeCCCeEEEEe
Q psy9598 826 GTTCALTDSYGHLLVYG 842 (1915)
Q Consensus 826 g~~Lasg~~dG~I~Iwd 842 (1915)
|.+||+|+.||.|+||+
T Consensus 324 g~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 324 GMAVATGSWDSFLKIWN 340 (340)
T ss_dssp SSCEEEEETTSCEEEEC
T ss_pred CCEEEEEcCCccEEecC
Confidence 99999999999999996
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-36 Score=413.26 Aligned_cols=362 Identities=11% Similarity=0.089 Sum_probs=267.6
Q ss_pred EecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCC
Q psy9598 471 VNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTL 550 (1915)
Q Consensus 471 ~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg 550 (1915)
...||.+.|+||+|+|+|.+||+|+.||+|+||+..++.++..+ .|...|.+|+|+| |.+|++|+.|++|+|||+.++
T Consensus 12 ~~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~-~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~ 89 (902)
T 2oaj_A 12 NKYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKL-EDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQ 89 (902)
T ss_dssp EEEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEEC-SSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTC
T ss_pred cccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEc-CCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCC
Confidence 34599999999999999999999999999999999888777665 4888999999999 889999999999999999999
Q ss_pred ceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCC-
Q psy9598 551 APISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPG- 629 (1915)
Q Consensus 551 ~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspd- 629 (1915)
+++..+. |.+.|++++|+|+ +.+|++|+.||+|++||+.++... .............+..|.+.|.+++|+|+
T Consensus 90 ~~~~~~~-~~~~V~~v~~sp~----g~~l~sgs~dg~V~lwd~~~~~~~-~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~ 163 (902)
T 2oaj_A 90 KVLTTVF-VPGKITSIDTDAS----LDWMLIGLQNGSMIVYDIDRDQLS-SFKLDNLQKSSFFPAARLSPIVSIQWNPRD 163 (902)
T ss_dssp SEEEEEE-CSSCEEEEECCTT----CSEEEEEETTSCEEEEETTTTEEE-EEEECCHHHHHTCSSSCCCCCCEEEEETTE
T ss_pred cEEEEEc-CCCCEEEEEECCC----CCEEEEEcCCCcEEEEECCCCccc-cceeccccccccccccCCCCeEEEEEccCC
Confidence 9998886 7789999999994 589999999999999999877532 11110000000223567889999999996
Q ss_pred CcEEEEEeCCCeEEEEEecCCCCCceeEEeccC------------------CCCeeEEEEcCCCCEEEEEeCCCcEEEEE
Q psy9598 630 GLFLATGSGDHHVRVYKMDGVDSPLGILEVEEH------------------SDKVDSIQWSHSHLRFVSGSRDGTALIWY 691 (1915)
Q Consensus 630 g~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h------------------~~~V~sl~fspdg~~L~sgs~DG~I~IWD 691 (1915)
+..|++|+.||.| |||+.. ...+..+..| ...|.+++|+|+|.+|++|+.||+|+|||
T Consensus 164 ~~~l~~g~~dg~v-lWd~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd 239 (902)
T 2oaj_A 164 IGTVLISYEYVTL-TYSLVE---NEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWD 239 (902)
T ss_dssp EEEEEEECSSCEE-EEETTT---TEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEE
T ss_pred CCEEEEEeCCCcE-EEECCC---CceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Confidence 5789999999999 999943 3344445444 57899999999999999999999999999
Q ss_pred ccCCceEEeeec----ccc------------c------------CCC--Cccccc-c-----------------------
Q psy9598 692 YKCSQWRFIRLD----MNT------------C------------LPH--TKETSD-E----------------------- 717 (1915)
Q Consensus 692 l~~~~~~~~~~~----~~~------------~------------~~~--~~~~~~-~----------------------- 717 (1915)
+.+++.+..... ... . .+. ...... .
T Consensus 240 ~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~ 319 (902)
T 2oaj_A 240 ANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSIT 319 (902)
T ss_dssp TTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGC
T ss_pred CCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCcccc
Confidence 988876542100 000 0 000 000000 0
Q ss_pred -------------------ccccccEEEEEECC----------CCCEEEEEEecCCeEEEEECCCCceEEE---------
Q psy9598 718 -------------------TNKKIKVTMVAWDA----------SDRWVITAINFNFQIKIWDAFNGDLVQV--------- 759 (1915)
Q Consensus 718 -------------------~~~~~~V~~va~sp----------dg~~L~t~s~~Dg~I~vwD~~tg~~i~~--------- 759 (1915)
..+...|..+++.+ +...+++++. ||.|++||+.+|.....
T Consensus 320 s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~-dg~l~~~~~~~g~~~~~~~~~~~~l~ 398 (902)
T 2oaj_A 320 SYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILG-NGEIETMLYPSGIFTDKASLFPQNLS 398 (902)
T ss_dssp CHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEET-TSCEEEEETTTCCEECCGGGSCGGGT
T ss_pred chhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcC-CCcEEEEECCCCCcccccccCCCccc
Confidence 01123344555443 2335666665 88899999877643321
Q ss_pred --------------------------------eeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeee
Q psy9598 760 --------------------------------LKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHN 807 (1915)
Q Consensus 760 --------------------------------l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~ 807 (1915)
+.||...+.+++|+| ++++|+||+.||+|++||+.++.......+..
T Consensus 399 ~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~sp-dg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~ 477 (902)
T 2oaj_A 399 WLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAE-YGTAFITGHSNGSVRIYDASHGDIQDNASFEV 477 (902)
T ss_dssp TBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCS-EEEEEEEEETTSEEEEEESSCCTTTTTBCEEE
T ss_pred ccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccc-cCcEEEEecCCCcEEEEECCCccccCCceEEe
Confidence 234444455556677 88999999999999999999885421122221
Q ss_pred ee----cCCCCcceEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q psy9598 808 IV----EGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGGF 846 (1915)
Q Consensus 808 ~~----~~~~~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl~s~ 846 (1915)
.+ ...|...|++++|+|||++||+|+.||+|+||++.++
T Consensus 478 ~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~ 520 (902)
T 2oaj_A 478 NLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVN 520 (902)
T ss_dssp EHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEEC
T ss_pred echhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCc
Confidence 11 1145678999999999999999999999999999876
|
| >2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-38 Score=371.78 Aligned_cols=239 Identities=21% Similarity=0.292 Sum_probs=180.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCccCCCCCCCCCCCCCccccccCCCCCHHHHHHHhcCCCCCCHHHHHHHHHHHHHh
Q psy9598 1365 EWPQGDRDATCEKIITGLEEVMGLSVAEPFLVPVDISQYPAYAYVVEYPVDLTTLRARFQNRFYRRITSAQFDVRYLAAN 1444 (1915)
Q Consensus 1365 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~tI~~rl~~~~Y~~~~~~~~D~~l~~~N 1444 (1915)
+|........+..++..+.. .++.++++|+.||++..+|+||+||++||||+||++|| ..+|.++++|.+||+|||.|
T Consensus 23 ~~~~p~~~~~~~~~L~~~~~-~~r~~~~~F~~p~~~~~~PdY~~iIk~PmDL~tI~~kl-~~y~~s~~~f~~D~~li~~N 100 (311)
T 2r0y_A 23 DWHIPKFNRFISFTLDVLID-KYKDIFKDFIKLPSRKFHPQYYYKIQQPMSINEIKSRD-YEYEDGPSNFLLDVELLTKN 100 (311)
T ss_dssp CCCCTTHHHHHHHHHHHHHH-HSHHHHGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHSC-CCSTTHHHHHHHHHHHHHHH
T ss_pred hhhchHHHHHHHHHHHHHHH-cCCchhHHhcCCCCcccCCChHHHcCCCCCHHHHHHHH-hcccCCHHHHHHHHHHHHHH
Confidence 44444445555566665554 57789999999999999999999999999999999999 34444899999999999999
Q ss_pred hhhhcCCCCHHHHHHHHHHHHHHHHHhCCCCCCccchhhhhcccccCCCChhhhhhhhhhhccccCCcchhhhhHHHhhh
Q psy9598 1445 AEKFNEPHSNIVKYARIITDLLLRIIKEPNPVDVPVVYHELLQNYETSSSEEEEEEDSKSRQRRVRPTAVTRAQREAMNQ 1524 (1915)
Q Consensus 1445 a~~yN~~~s~i~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1524 (1915)
|++||+++|.|+++|+.|.++|.+.+..... ....... . + +.+ .+........
T Consensus 101 a~~yN~~~s~i~~~A~~l~~~~~~~~~k~k~---------~~~~~~i-~---~---~~k-----------~~l~~~~~~l 153 (311)
T 2r0y_A 101 CQAYNEYDSLIVKNSMQVVMLIEFEVLKAKN---------LKRNYLI-N---S---EVK-----------AKLLHYLNKL 153 (311)
T ss_dssp HHHHSCTTSHHHHHHHHHHHHHHHHHHHHHT---------GGGCCBC-C---H---HHH-----------HHHHHHHHHH
T ss_pred HHHccCCCCHHHHHHHHHHHHHHHHHhhccc---------CCCCCCC-C---h---HHH-----------HHHHHHHHHH
Confidence 9999999999999999999999887764210 0000000 0 0 000 0000000000
Q ss_pred hhcCCchhhHHHHHHHHHHHH-------cCCCCCCCCCCCCCCCCCCccccccCccchhhHHhhhcCCCCCCHHHHHHHH
Q psy9598 1525 KKLKRPFNWKNECREVLETLW-------VCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDV 1597 (1915)
Q Consensus 1525 ~~~~~~~~~~~~~~~ll~~l~-------~~~~s~~F~~pv~~~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~Dv 1597 (1915)
.... ...+..++.... .++.++||+.||++.++||||+||++||||+||++||++|.|.++++|..||
T Consensus 154 -~~~~----~~~i~~~l~~~r~~k~~~~~~~~s~~F~~pvd~~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv 228 (311)
T 2r0y_A 154 -VDAT----EKKINQALLGASSPKNLDDKVKLSEPFMELVDKDELPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDM 228 (311)
T ss_dssp -HHCC----HHHHHHHHHGGGSCSSCCCSSCTTGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHHTCCCBHHHHHHHH
T ss_pred -Hhhh----HHHHHHHHhccccccccccCCccHHHHhCCCChhhcccHHHHhCCccCHHHHHHHHHcCCCCCHHHHHHHH
Confidence 0000 011122221111 3567999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHH-HHHHhh
Q psy9598 1598 KRVFHNSRNYNQNKRSKIYIMTTRLSEFAEEHLRR-LTVRWN 1638 (1915)
Q Consensus 1598 ~lif~Na~~yN~~~~s~i~~~a~~l~~~f~~~~~~-~~~~~~ 1638 (1915)
+|||+||++||+++ |.||.+|..|+++|++++++ +...+.
T Consensus 229 ~Lif~N~~~yN~~~-s~i~~~A~~L~~~f~~~~~~~~~p~~~ 269 (311)
T 2r0y_A 229 LLVFQNAHIFNDPS-ALIYKDATTLTNYFNYLIQKEFFPELQ 269 (311)
T ss_dssp HHHHHHHHHHSCTT-SHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHhCCCC-CHHHHHHHHHHHHHHHHHHHhcCCcch
Confidence 99999999999987 99999999999999999998 344433
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-36 Score=412.75 Aligned_cols=416 Identities=13% Similarity=0.056 Sum_probs=299.2
Q ss_pred ccccccCCCeEEEecccCCceeeeEEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEE
Q psy9598 446 REYSGPLSRSLMISSHKYSNLRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIA 525 (1915)
Q Consensus 446 r~~tg~~d~~~~i~~~~~~~~~~~~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~La 525 (1915)
..++|+.++.+.+|+... ...... ..|...|++|+|+| |++||+|+.|++|+|||+.+++++.++. |.+.|++++
T Consensus 31 ~lAsgs~Dg~I~lw~~~~--~~~~~~-~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~-~~~~V~~v~ 105 (902)
T 2oaj_A 31 LLAIATVTGEVHIYGQQQ--VEVVIK-LEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVF-VPGKITSID 105 (902)
T ss_dssp EEEEEETTSEEEEECSTT--CEEEEE-CSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEE-CSSCEEEEE
T ss_pred EEEEEeCCCEEEEEeCCC--cEEEEE-cCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEc-CCCCEEEEE
Confidence 456788999999997543 333333 46889999999999 8899999999999999999999999987 778999999
Q ss_pred EeCCCCEEEEEeCCCcEEEEECCCCceE-----------EEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecc
Q psy9598 526 IDNRNILLAAGTVDKTIRIWNLQTLAPI-----------SVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYK 594 (1915)
Q Consensus 526 fspdg~~LaSgs~DgtIrVWDl~tg~~~-----------~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~ 594 (1915)
|+|++.+|++|+.||+|++||+.++.+. ..+.+|.+.|++|+|+|. +...|++|+.||+| +||+.
T Consensus 106 ~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~---~~~~l~~g~~dg~v-lWd~~ 181 (902)
T 2oaj_A 106 TDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPR---DIGTVLISYEYVTL-TYSLV 181 (902)
T ss_dssp CCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETT---EEEEEEEECSSCEE-EEETT
T ss_pred ECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccC---CCCEEEEEeCCCcE-EEECC
Confidence 9999999999999999999999988764 234679999999999994 34789999999999 99999
Q ss_pred cCccccceeccCccccc------cccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeE--Ee---cc--
Q psy9598 595 LDIDISKTVFHEPVMFN------ERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGIL--EV---EE-- 661 (1915)
Q Consensus 595 ~~~~~~~~~~~~~~~~~------~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~--~l---~~-- 661 (1915)
++..+..+..+.+.... .....|...|.+++|+|+|.+|++|+.||.|+|||+... ..+. .+ ..
T Consensus 182 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g---~~~~~r~l~~~~~~~ 258 (902)
T 2oaj_A 182 ENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSG---HMIMARTVFETEINV 258 (902)
T ss_dssp TTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTC---CEEEEECSSCSCTTS
T ss_pred CCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC---cEEEEEeecccccCC
Confidence 88655444322100000 112234578999999999999999999999999999542 2222 12 11
Q ss_pred -----------CCCCeeEEEEcC----CC-CEEEEEeCC-----CcEEEEEccC------------------CceEEee-
Q psy9598 662 -----------HSDKVDSIQWSH----SH-LRFVSGSRD-----GTALIWYYKC------------------SQWRFIR- 701 (1915)
Q Consensus 662 -----------h~~~V~sl~fsp----dg-~~L~sgs~D-----G~I~IWDl~~------------------~~~~~~~- 701 (1915)
|...|.+++|++ ++ .+|++|+.| +.+.+|++.. .......
T Consensus 259 ~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 338 (902)
T 2oaj_A 259 PQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFP 338 (902)
T ss_dssp CCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEEC
T ss_pred CCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEe
Confidence 345799999954 33 466777665 3788887420 0000000
Q ss_pred -----------ecc---------c-----------cc------CCCCcc------cc-----------------------
Q psy9598 702 -----------LDM---------N-----------TC------LPHTKE------TS----------------------- 715 (1915)
Q Consensus 702 -----------~~~---------~-----------~~------~~~~~~------~~----------------------- 715 (1915)
... . .. ..+... ..
T Consensus 339 ~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~ 418 (902)
T 2oaj_A 339 LPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWL 418 (902)
T ss_dssp CSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHH
T ss_pred cCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHH
Confidence 000 0 00 000000 00
Q ss_pred -----------ccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceE----EE--ee-----CCCCCeEEEEEc
Q psy9598 716 -----------DETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLV----QV--LK-----GHTNEVFVLESH 773 (1915)
Q Consensus 716 -----------~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i----~~--l~-----gH~~~V~sl~~s 773 (1915)
...+|...+.+++|+|++++|++++. |++|++||+.++.+. .. +. +|...|++|+|+
T Consensus 419 ~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~-DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafs 497 (902)
T 2oaj_A 419 GALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHS-NGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFA 497 (902)
T ss_dssp HHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEET-TSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEE
T ss_pred HHHhcccCCCCcccCCcCCCCcccccccCcEEEEecC-CCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEec
Confidence 01122333444566789999999998 999999999887531 11 11 899999999999
Q ss_pred cCCCCEEEEEecCceEEEEECCCCcccc----------------------------------------ceeeeeeecCCC
Q psy9598 774 PFDSRVLLSAGHDGLIIIWDILSSKQRG----------------------------------------YKWFHNIVEGQG 813 (1915)
Q Consensus 774 p~dg~~LaSgs~DG~I~IWdl~s~~~~~----------------------------------------~~~~~~~~~~~~ 813 (1915)
| ++.+||+|+.||+|+||++.+++..+ ...+ ..+ ..|
T Consensus 498 p-dg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~l-~~h 574 (902)
T 2oaj_A 498 A-ETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPS-TAV-HAN 574 (902)
T ss_dssp T-TTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEE-EEE-CCC
T ss_pred C-CCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCcccee-EEE-EcC
Confidence 9 99999999999999999998763100 0001 112 237
Q ss_pred CcceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccc-----ccC-------CCceeec-----CCC---CeeeecC-CCc
Q psy9598 814 EGALFDGKWSPDGTTCALTDSYGHLLVYGLGGFKRP-----QNI-------PRELFFH-----TDY---RTLNRPN-GLF 872 (1915)
Q Consensus 814 ~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl~s~~~~-----~~l-------~~~~~F~-----~d~---~~Lv~~~-~~~ 872 (1915)
.+.|++++||||| +||+|+.||+|+|||+.+...+ ..+ ...+.|+ +|+ +.|+..+ .+.
T Consensus 575 ~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~t 653 (902)
T 2oaj_A 575 KGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGE 653 (902)
T ss_dssp SCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSE
T ss_pred CCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCc
Confidence 7899999999999 9999999999999999876543 122 2368899 886 6666443 455
Q ss_pred cceeec
Q psy9598 873 EPTYDE 878 (1915)
Q Consensus 873 ~~v~D~ 878 (1915)
+.+||+
T Consensus 654 v~~wd~ 659 (902)
T 2oaj_A 654 VITYKI 659 (902)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 789998
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-35 Score=353.72 Aligned_cols=298 Identities=24% Similarity=0.406 Sum_probs=256.8
Q ss_pred CceeeeEEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEE
Q psy9598 464 SNLRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIR 543 (1915)
Q Consensus 464 ~~~~~~~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIr 543 (1915)
..+.+..++.||...|++++|+|+|++||+|+.||.|+||++.++.....+.+|...|.+++|+|++++|++|+.|+.|+
T Consensus 11 ~~~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~ 90 (312)
T 4ery_A 11 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLK 90 (312)
T ss_dssp CCCEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred CCceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEE
Confidence 34566778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEE
Q psy9598 544 IWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILC 623 (1915)
Q Consensus 544 VWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~ 623 (1915)
|||+.++.++..+.+|...|.+++|+|. +.+|++|+.||+|++||+.++..+.. +..|...|.+
T Consensus 91 vwd~~~~~~~~~~~~~~~~v~~~~~~~~----~~~l~s~~~d~~i~iwd~~~~~~~~~------------~~~~~~~v~~ 154 (312)
T 4ery_A 91 IWDVSSGKCLKTLKGHSNYVFCCNFNPQ----SNLIVSGSFDESVRIWDVKTGKCLKT------------LPAHSDPVSA 154 (312)
T ss_dssp EEETTTCCEEEEEECCSSCEEEEEECSS----SSEEEEEETTSCEEEEETTTCCEEEE------------ECCCSSCEEE
T ss_pred EEECCCCcEEEEEcCCCCCEEEEEEcCC----CCEEEEEeCCCcEEEEECCCCEEEEE------------ecCCCCcEEE
Confidence 9999999999999999999999999994 48999999999999999987754322 2346688999
Q ss_pred EEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEe-ccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeee
Q psy9598 624 SSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEV-EEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRL 702 (1915)
Q Consensus 624 l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l-~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~ 702 (1915)
++|+|++.+|++|+.||.|++||+.. ...+..+ ..+...+.+++|+|++.+|++++.||.|++||+.++.......
T Consensus 155 ~~~~~~~~~l~~~~~d~~i~~wd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 231 (312)
T 4ery_A 155 VHFNRDGSLIVSSSYDGLCRIWDTAS---GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 231 (312)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTT---CCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEC
T ss_pred EEEcCCCCEEEEEeCCCcEEEEECCC---CceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEE
Confidence 99999999999999999999999943 2333333 4567789999999999999999999999999999887544321
Q ss_pred cccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEE
Q psy9598 703 DMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLS 782 (1915)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaS 782 (1915)
... .....+......+++.+|++++. ||.|++||+.+++++..+.+|...|.+++|+| ++.+|++
T Consensus 232 ~~~-------------~~~~~~~~~~~~~~~~~l~sg~~-dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~s 296 (312)
T 4ery_A 232 GHK-------------NEKYCIFANFSVTGGKWIVSGSE-DNLVYIWNLQTKEIVQKLQGHTDVVISTACHP-TENIIAS 296 (312)
T ss_dssp SSC-------------CSSSCCCEEEECSSSCEEEECCT-TSCEEEEETTTCCEEEEECCCSSCEEEEEECS-SSSEEEE
T ss_pred ecC-------------CceEEEEEEEEeCCCcEEEEECC-CCEEEEEECCCchhhhhhhccCCcEEEEeecC-cCCceEE
Confidence 100 01112223334467888888887 99999999999999999999999999999999 9999999
Q ss_pred Ee--cCceEEEEECC
Q psy9598 783 AG--HDGLIIIWDIL 795 (1915)
Q Consensus 783 gs--~DG~I~IWdl~ 795 (1915)
++ .||+|+||+..
T Consensus 297 ~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 297 AALENDKTIKLWKSD 311 (312)
T ss_dssp EECTTTCCEEEEECC
T ss_pred EEccCCccEEEecCC
Confidence 87 69999999864
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-35 Score=373.58 Aligned_cols=299 Identities=25% Similarity=0.374 Sum_probs=248.5
Q ss_pred cCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCC------------------CEEEEEEeCCCCEEE
Q psy9598 473 LGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSG------------------EISDIAIDNRNILLA 534 (1915)
Q Consensus 473 ~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~------------------~I~~Lafspdg~~La 534 (1915)
.+|.+.|+|++|+|+|++||+|+ ++.|+||++.++..+..+.+|.. .|++++|+|+|++||
T Consensus 61 ~~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~ 139 (393)
T 1erj_A 61 LDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA 139 (393)
T ss_dssp EECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEE
T ss_pred cCCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEE
Confidence 37999999999999999999987 67999999999999988876643 399999999999999
Q ss_pred EEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCcccccccc
Q psy9598 535 AGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERI 614 (1915)
Q Consensus 535 Sgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~ 614 (1915)
+|+.|++|+|||+.+++.+..+.+|...|++++|+|+ +.+|++|+.|++|++||+.++.....+.
T Consensus 140 s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~----~~~l~s~s~d~~v~iwd~~~~~~~~~~~----------- 204 (393)
T 1erj_A 140 TGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPS----GDKLVSGSGDRTVRIWDLRTGQCSLTLS----------- 204 (393)
T ss_dssp EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTT----SSEEEEEETTSEEEEEETTTTEEEEEEE-----------
T ss_pred EEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCC----CCEEEEecCCCcEEEEECCCCeeEEEEE-----------
Confidence 9999999999999999999999999999999999994 4899999999999999998876433322
Q ss_pred CCCCCceEEEEECC-CCcEEEEEeCCCeEEEEEecCCCCCceeEEe-------ccCCCCeeEEEEcCCCCEEEEEeCCCc
Q psy9598 615 RPGNAHILCSSFSP-GGLFLATGSGDHHVRVYKMDGVDSPLGILEV-------EEHSDKVDSIQWSHSHLRFVSGSRDGT 686 (1915)
Q Consensus 615 ~~~~~~V~~l~fsp-dg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l-------~~h~~~V~sl~fspdg~~L~sgs~DG~ 686 (1915)
+...+.+++|+| ++.+|++|+.||.|+|||+... ..+..+ .+|...|.+++|+|+|.+|++|+.||+
T Consensus 205 --~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~---~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~ 279 (393)
T 1erj_A 205 --IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETG---FLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRS 279 (393)
T ss_dssp --CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTC---CEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred --cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCC---cEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCE
Confidence 236789999999 8999999999999999998432 333333 579999999999999999999999999
Q ss_pred EEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCCC
Q psy9598 687 ALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNE 766 (1915)
Q Consensus 687 I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~ 766 (1915)
|++||+.+........ ............+|...|.+++|++++.+|++++. |+.|++||+.++.++..+.+|.+.
T Consensus 280 v~~wd~~~~~~~~~~~----~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~-D~~v~iwd~~~~~~~~~l~~h~~~ 354 (393)
T 1erj_A 280 VKLWNLQNANNKSDSK----TPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSK-DRGVLFWDKKSGNPLLMLQGHRNS 354 (393)
T ss_dssp EEEEEC-------------------CEEEEEECCSSCEEEEEECGGGCEEEEEET-TSEEEEEETTTCCEEEEEECCSSC
T ss_pred EEEEECCCCCCccccc----CCCCCcceEEEecccCcEEEEEECCCCCEEEEEeC-CCeEEEEECCCCeEEEEECCCCCC
Confidence 9999998654221100 00001111233467788999999999999999998 999999999999999999999999
Q ss_pred eEEEEEccC-----CCCEEEEEecCceEEEEECCCC
Q psy9598 767 VFVLESHPF-----DSRVLLSAGHDGLIIIWDILSS 797 (1915)
Q Consensus 767 V~sl~~sp~-----dg~~LaSgs~DG~I~IWdl~s~ 797 (1915)
|.+++|++. ++.+|+||+.||+|+||++...
T Consensus 355 v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 355 VISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp EEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred EEEEEecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence 999999862 5789999999999999998643
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-35 Score=363.80 Aligned_cols=316 Identities=20% Similarity=0.255 Sum_probs=255.2
Q ss_pred CcEEEEEeCCCC-CEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEE---EeecCCCCeEEEEeccCccCCCcEEEEEe
Q psy9598 508 GKLLATLRGCSG-EISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPIS---VLVGHQGIITGVNFCPLEVNGFNYLASTS 583 (1915)
Q Consensus 508 g~~~~~l~gH~~-~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~---~l~~h~~~V~sl~fsp~~~~d~~~L~sgs 583 (1915)
..++.++.+|.. .|.+|+|+|+|.+||+|+.|++|+|||+.++.... ...+|...|++++|+|+ +.+|++|+
T Consensus 5 ~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~----g~~l~s~s 80 (345)
T 3fm0_A 5 LVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPC----GNYLASAS 80 (345)
T ss_dssp EEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTT----SSEEEEEE
T ss_pred EEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCC----CCEEEEEE
Confidence 357788999988 99999999999999999999999999998876432 23689999999999994 58999999
Q ss_pred CCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCC
Q psy9598 584 TDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHS 663 (1915)
Q Consensus 584 ~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~ 663 (1915)
.|++|++|++..+... ....+.+|...|.+++|+|+|.+|++|+.|+.|+|||+........+..+.+|.
T Consensus 81 ~D~~v~iw~~~~~~~~----------~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~ 150 (345)
T 3fm0_A 81 FDATTCIWKKNQDDFE----------CVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHT 150 (345)
T ss_dssp TTSCEEEEEECCC-EE----------EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCC
T ss_pred CCCcEEEEEccCCCeE----------EEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcC
Confidence 9999999998765321 112344678999999999999999999999999999996555455667788999
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecC
Q psy9598 664 DKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFN 743 (1915)
Q Consensus 664 ~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~D 743 (1915)
..|.+++|+|++.+|++|+.||+|++||+..+.+.... ...+|...|++++|+|+|.+|++++. |
T Consensus 151 ~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~--------------~~~~h~~~v~~l~~sp~g~~l~s~s~-D 215 (345)
T 3fm0_A 151 QDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCA--------------TLEGHESTVWSLAFDPSGQRLASCSD-D 215 (345)
T ss_dssp SCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEE--------------EECCCSSCEEEEEECTTSSEEEEEET-T
T ss_pred CCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEE--------------EecCCCCceEEEEECCCCCEEEEEeC-C
Confidence 99999999999999999999999999999877643211 13357788999999999999999998 9
Q ss_pred CeEEEEECCC---------------CceEEEeeC-CCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCcccc--ceee
Q psy9598 744 FQIKIWDAFN---------------GDLVQVLKG-HTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRG--YKWF 805 (1915)
Q Consensus 744 g~I~vwD~~t---------------g~~i~~l~g-H~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~--~~~~ 805 (1915)
++|+||+... ..++..+.+ |...|++++|+| ++.+|++++.|+.|+||++..+.... ...+
T Consensus 216 ~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~-~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~ 294 (345)
T 3fm0_A 216 RTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQ-LTGALATACGDDAIRVFQEDPNSDPQQPTFSL 294 (345)
T ss_dssp SCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECT-TTCCEEEEETTSCEEEEEECTTSCTTSCCEEE
T ss_pred CeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEec-CCCEEEEEeCCCeEEEEEeCCCCCcceeeEEE
Confidence 9999999632 134556665 889999999999 88999999999999999997654211 1112
Q ss_pred eeeecCCCCcceEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCcccccCC
Q psy9598 806 HNIVEGQGEGALFDGKWSPDG-TTCALTDSYGHLLVYGLGGFKRPQNIP 853 (1915)
Q Consensus 806 ~~~~~~~~~~~V~~vafSpdg-~~Lasg~~dG~I~Iwdl~s~~~~~~l~ 853 (1915)
.......|.+.|.+++|+|++ .+||+|+.||.|+||++.+.+.+...+
T Consensus 295 ~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~~~~ 343 (345)
T 3fm0_A 295 TAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGLHHHH 343 (345)
T ss_dssp EEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC--------
T ss_pred EeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCccccc
Confidence 222234567899999999998 599999999999999999887665443
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-36 Score=371.89 Aligned_cols=324 Identities=16% Similarity=0.149 Sum_probs=237.3
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeC------CCcEEEEECCCCce--
Q psy9598 481 CVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTV------DKTIRIWNLQTLAP-- 552 (1915)
Q Consensus 481 ~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~------DgtIrVWDl~tg~~-- 552 (1915)
.+.+.+++.+ +.++.+.....|++.... ..+|...|++|+|+|||++||+|+. |+.|++|+..++.+
T Consensus 10 g~d~g~~~~~-~~~~g~~~~~~w~~p~~~----p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~ 84 (357)
T 4g56_B 10 GVDLGTENLY-FQSNGSSKGSAWGRPVTA----PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNE 84 (357)
T ss_dssp -----------------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CG
T ss_pred CCCCCccceE-EecCCCccccccCCCCCC----cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcce
Confidence 3455555545 444556788999975433 3579999999999999999999997 77899999887654
Q ss_pred --EEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCC
Q psy9598 553 --ISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGG 630 (1915)
Q Consensus 553 --~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg 630 (1915)
.....+|...|++++|+|+ ..+++++.||+|+|||+.++.......+ ...+|...|.+++|+|+|
T Consensus 85 ~~~~~~~~~~~~V~~~~~s~d-----~~~l~~s~dg~v~lWd~~~~~~~~~~~~--------~~~~h~~~V~~v~~spdg 151 (357)
T 4g56_B 85 SLCTAGVQTEAGVTDVAWVSE-----KGILVASDSGAVELWEILEKESLLVNKF--------AKYEHDDIVKTLSVFSDG 151 (357)
T ss_dssp GGCSEEEECSSCEEEEEEETT-----TEEEEEETTSCEEEC--------CCCCE--------EECCCSSCEEEEEECSSS
T ss_pred eEecccCCCCCCEEEEEEcCC-----CCEEEEECCCEEEEeeccccceeEEEee--------ccCCCCCCEEEEEECCCC
Confidence 3344578999999999994 3567788999999999988754332221 233678899999999999
Q ss_pred cEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCC-EEEEEeCCCcEEEEEccCCceEEeeecccccCC
Q psy9598 631 LFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHL-RFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLP 709 (1915)
Q Consensus 631 ~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~-~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~ 709 (1915)
.+|++|+.||.|+|||+ .....+..+.+|...|.+|+|++++. +|++++.||+|+|||+++++....
T Consensus 152 ~~l~sgs~dg~v~iwd~---~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~--------- 219 (357)
T 4g56_B 152 TQAVSGGKDFSVKVWDL---SQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATR--------- 219 (357)
T ss_dssp SEEEEEETTSCEEEEET---TTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCB---------
T ss_pred CEEEEEeCCCeEEEEEC---CCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeee---------
Confidence 99999999999999998 34567778899999999999999875 789999999999999987763221
Q ss_pred CCccccccccccccEEEEEECCCC-CEEEEEEecCCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEEecCce
Q psy9598 710 HTKETSDETNKKIKVTMVAWDASD-RWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGL 788 (1915)
Q Consensus 710 ~~~~~~~~~~~~~~V~~va~spdg-~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~ 788 (1915)
.....+...+.+++|+|++ .+|++++. |+.|++||+.+++++..+.+|...|++|+|+|.++.+|++|+.||+
T Consensus 220 -----~~~~~~~~~v~~v~~sp~~~~~la~g~~-d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~ 293 (357)
T 4g56_B 220 -----IDFCASDTIPTSVTWHPEKDDTFACGDE-TGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCT 293 (357)
T ss_dssp -----CCCTTCCSCEEEEEECTTSTTEEEEEES-SSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSC
T ss_pred -----eeeccccccccchhhhhcccceEEEeec-ccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCE
Confidence 1123356779999999985 56666666 9999999999999999999999999999999944578999999999
Q ss_pred EEEEECCCCccccceeeeeeecCCCCcceEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCcc
Q psy9598 789 IIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSP-DGTTCALTDSYGHLLVYGLGGFKR 848 (1915)
Q Consensus 789 I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSp-dg~~Lasg~~dG~I~Iwdl~s~~~ 848 (1915)
|+|||+.+++. +..+ .|.+.|++++|+| ++.+||+|+.||.|++|++.+...
T Consensus 294 i~iwd~~~~~~--~~~~------~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~ 346 (357)
T 4g56_B 294 VAVLDADFSEV--FRDL------SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEGR 346 (357)
T ss_dssp EEEECTTSCEE--EEEC------CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC----
T ss_pred EEEEECCCCcE--eEEC------CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCc
Confidence 99999998876 4332 4678999999998 899999999999999999976543
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-35 Score=356.45 Aligned_cols=294 Identities=21% Similarity=0.281 Sum_probs=252.4
Q ss_pred cEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeE
Q psy9598 509 KLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCI 588 (1915)
Q Consensus 509 ~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI 588 (1915)
.+..+|.+|.+.|++|+|+|++.+|++|+.||+|+|||+.++..+..+.+|...|.+++|+|+ +++|++|+.|++|
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~----~~~l~s~s~d~~i 79 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIAR----KNWIIVGSDDFRI 79 (304)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGG----GTEEEEEETTSEE
T ss_pred eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCC----CCEEEEECCCCEE
Confidence 456789999999999999999999999999999999999999999999999999999999995 4899999999999
Q ss_pred EEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeE
Q psy9598 589 GFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDS 668 (1915)
Q Consensus 589 ~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~s 668 (1915)
++||+.++..+.. +..|...|.+++|+|++.+|++|+.||+|++||+... ......+.+|...|.+
T Consensus 80 ~vwd~~~~~~~~~------------~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~--~~~~~~~~~h~~~v~~ 145 (304)
T 2ynn_A 80 RVFNYNTGEKVVD------------FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN--WALEQTFEGHEHFVMC 145 (304)
T ss_dssp EEEETTTCCEEEE------------EECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGT--TEEEEEECCCCSCEEE
T ss_pred EEEECCCCcEEEE------------EeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCC--cchhhhhcccCCcEEE
Confidence 9999988764332 2356789999999999999999999999999999532 2344567899999999
Q ss_pred EEEcC-CCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECC--CCCEEEEEEecCCe
Q psy9598 669 IQWSH-SHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDA--SDRWVITAINFNFQ 745 (1915)
Q Consensus 669 l~fsp-dg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~sp--dg~~L~t~s~~Dg~ 745 (1915)
++|+| ++.+|++|+.||+|++||+......... ...+...+..++|++ ++.+|++++. |+.
T Consensus 146 v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~---------------~~~~~~~v~~~~~~~~~~~~~l~s~s~-D~~ 209 (304)
T 2ynn_A 146 VAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTL---------------TTGQERGVNYVDYYPLPDKPYMITASD-DLT 209 (304)
T ss_dssp EEECTTCTTEEEEEETTSEEEEEETTCSSCSEEE---------------ECCCTTCEEEEEECCSTTCCEEEEEET-TSE
T ss_pred EEECCCCCCEEEEEeCCCeEEEEECCCCCcccee---------------ccCCcCcEEEEEEEEcCCCCEEEEEcC-CCe
Confidence 99999 6789999999999999999765522211 123456788889886 6789999988 999
Q ss_pred EEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCC
Q psy9598 746 IKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPD 825 (1915)
Q Consensus 746 I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpd 825 (1915)
|++||+.+++++..+.+|...|.+++|+| ++.+|+||+.||+|+|||+.+++. +..+. .+...+++++|+|+
T Consensus 210 i~iWd~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~s~s~Dg~i~iWd~~~~~~--~~~~~-----~~~~~~~~~~~~~~ 281 (304)
T 2ynn_A 210 IKIWDYQTKSCVATLEGHMSNVSFAVFHP-TLPIIISGSEDGTLKIWNSSTYKV--EKTLN-----VGLERSWCIATHPT 281 (304)
T ss_dssp EEEEETTTTEEEEEEECCSSCEEEEEECS-SSSEEEEEETTSCEEEEETTTCCE--EEEEC-----CSSSSEEEEEECTT
T ss_pred EEEEeCCCCccceeeCCCCCCEEEEEECC-CCCEEEEEcCCCeEEEEECCCCce--eeecc-----CCCccEEEEEECCC
Confidence 99999999999999999999999999999 899999999999999999999887 65554 45678999999998
Q ss_pred CC--EEEEEeCCCeEEEEeCCC
Q psy9598 826 GT--TCALTDSYGHLLVYGLGG 845 (1915)
Q Consensus 826 g~--~Lasg~~dG~I~Iwdl~s 845 (1915)
+. +||+|+.+ .+.+|++..
T Consensus 282 ~~~~~~asg~~~-g~~~~~~~~ 302 (304)
T 2ynn_A 282 GRKNYIASGFDN-GFTVLSLGN 302 (304)
T ss_dssp CGGGCEEEEETT-EEEEEECC-
T ss_pred CCceEEEEecCC-ceEEEEecc
Confidence 75 46766654 577887764
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-36 Score=376.36 Aligned_cols=318 Identities=17% Similarity=0.223 Sum_probs=266.4
Q ss_pred cEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcE
Q psy9598 499 LIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNY 578 (1915)
Q Consensus 499 ~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~ 578 (1915)
.+.+|+..+..+..+|.||.+.|++|+|+|++.+|+||+.||+|+|||+.++..+..+.+|...|.+++|+|+ +.+
T Consensus 47 ~~~~~~~~~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~----g~~ 122 (380)
T 3iz6_a 47 TAVSFNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPN----GQS 122 (380)
T ss_dssp GCCCCCCCCCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTT----SSE
T ss_pred cccccccceeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCC----CCE
Confidence 3456777778888999999999999999999999999999999999999999999999999999999999994 589
Q ss_pred EEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCC-CcEEEEEeCCCeEEEEEecCCCCCceeE
Q psy9598 579 LASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPG-GLFLATGSGDHHVRVYKMDGVDSPLGIL 657 (1915)
Q Consensus 579 L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspd-g~~Lasgs~Dg~I~IwDl~~~~~~~~i~ 657 (1915)
|++|+.|++|++|++.+..... ........+.+|.+.|.++.|+|+ +..|++|+.|++|++||+.. ...+.
T Consensus 123 las~~~d~~v~iw~~~~~~~~~-----~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~---~~~~~ 194 (380)
T 3iz6_a 123 VACGGLDSACSIFNLSSQADRD-----GNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTT---GQRIS 194 (380)
T ss_dssp EEECCSSSCCEEEECCCCSSCC-----CSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTT---CCEEE
T ss_pred EEEeeCCCcEEEEECCCCcccc-----CCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCC---CcEEE
Confidence 9999999999999997643110 111122345678899999999997 45799999999999999943 33444
Q ss_pred Ee-----ccCCCCeeEEEEcC-CCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECC
Q psy9598 658 EV-----EEHSDKVDSIQWSH-SHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDA 731 (1915)
Q Consensus 658 ~l-----~~h~~~V~sl~fsp-dg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~sp 731 (1915)
.+ .+|...|.+++|++ ++.+|++|+.||+|++||++.... ......+|...|++++|+|
T Consensus 195 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~---------------~~~~~~~h~~~v~~v~~~p 259 (380)
T 3iz6_a 195 IFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSR---------------AVRTYHGHEGDINSVKFFP 259 (380)
T ss_dssp EECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCC---------------CCEEECCCSSCCCEEEECT
T ss_pred EeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCc---------------ceEEECCcCCCeEEEEEec
Confidence 44 67999999999987 789999999999999999974321 1112345788899999999
Q ss_pred CCCEEEEEEecCCeEEEEECCCCceEEEeeCCCC-------CeEEEEEccCCCCEEEEEecCceEEEEECCCCcccccee
Q psy9598 732 SDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTN-------EVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKW 804 (1915)
Q Consensus 732 dg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~-------~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~ 804 (1915)
++.+|++++. ||+|+|||+.++.++..+..|.. .|++++|+| ++.+|++|+.||.|+|||+.++.. +..
T Consensus 260 ~~~~l~s~s~-D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~g~~dg~i~vwd~~~~~~--~~~ 335 (380)
T 3iz6_a 260 DGQRFGTGSD-DGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSI-SGRLLFAGYSNGDCYVWDTLLAEM--VLN 335 (380)
T ss_dssp TSSEEEEECS-SSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECS-SSSEEEEECTTSCEEEEETTTCCE--EEE
T ss_pred CCCeEEEEcC-CCeEEEEECCCCcEEEEecccccccccccCceEEEEECC-CCCEEEEEECCCCEEEEECCCCce--EEE
Confidence 9999999998 99999999999999988876533 489999999 999999999999999999988776 444
Q ss_pred eeeeecCCCCcceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcc
Q psy9598 805 FHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGGFKR 848 (1915)
Q Consensus 805 ~~~~~~~~~~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl~s~~~ 848 (1915)
+.. +...|.+.|.+++|+|+|.+|++|+.||.|+||++.+.+.
T Consensus 336 ~~~-~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~~ 378 (380)
T 3iz6_a 336 LGT-LQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHRK 378 (380)
T ss_dssp ECC-SCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSSSS
T ss_pred Eec-ccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCCcc
Confidence 422 2235678999999999999999999999999999987643
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-35 Score=401.13 Aligned_cols=375 Identities=14% Similarity=0.221 Sum_probs=308.2
Q ss_pred eeeeEEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEE
Q psy9598 466 LRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIW 545 (1915)
Q Consensus 466 ~~~~~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVW 545 (1915)
+...+.|.+|.+.|+|++|+|+|.+||+|+.||.|+|||+.++..+..+.+|.+.|++++|+|++.+|++|+.||.|+||
T Consensus 3 l~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw 82 (814)
T 3mkq_A 3 LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVF 82 (814)
T ss_dssp CCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEE
T ss_pred cccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEE
Confidence 45567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEE
Q psy9598 546 NLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSS 625 (1915)
Q Consensus 546 Dl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~ 625 (1915)
|+.++..+..+.+|.+.|++++|+|+ +.+|++|+.||+|++||+.++.... ..+..|...|.+++
T Consensus 83 ~~~~~~~~~~~~~~~~~v~~~~~s~~----~~~l~~~~~dg~i~vw~~~~~~~~~-----------~~~~~~~~~v~~~~ 147 (814)
T 3mkq_A 83 NYNTGEKVVDFEAHPDYIRSIAVHPT----KPYVLSGSDDLTVKLWNWENNWALE-----------QTFEGHEHFVMCVA 147 (814)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECSS----SSEEEEEETTSEEEEEEGGGTSEEE-----------EEEECCSSCEEEEE
T ss_pred ECCCCcEEEEEecCCCCEEEEEEeCC----CCEEEEEcCCCEEEEEECCCCceEE-----------EEEcCCCCcEEEEE
Confidence 99999999999999999999999995 4899999999999999998762211 12335678899999
Q ss_pred ECC-CCcEEEEEeCCCeEEEEEecCCCCCceeEEecc-CCCCeeEEEEcC--CCCEEEEEeCCCcEEEEEccCCceEEee
Q psy9598 626 FSP-GGLFLATGSGDHHVRVYKMDGVDSPLGILEVEE-HSDKVDSIQWSH--SHLRFVSGSRDGTALIWYYKCSQWRFIR 701 (1915)
Q Consensus 626 fsp-dg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~-h~~~V~sl~fsp--dg~~L~sgs~DG~I~IWDl~~~~~~~~~ 701 (1915)
|+| ++..|++|+.||.|++||+... .....+.. |...|.+++|+| ++.+|++|+.||.|++||+.++......
T Consensus 148 ~~p~~~~~l~~~~~dg~v~vwd~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~ 224 (814)
T 3mkq_A 148 FNPKDPSTFASGCLDRTVKVWSLGQS---TPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL 224 (814)
T ss_dssp EETTEEEEEEEEETTSEEEEEETTCS---SCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEE
T ss_pred EEcCCCCEEEEEeCCCeEEEEECCCC---cceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEE
Confidence 999 8899999999999999999432 22333444 448999999999 9999999999999999999887644321
Q ss_pred ecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCC-EE
Q psy9598 702 LDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSR-VL 780 (1915)
Q Consensus 702 ~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~-~L 780 (1915)
..|...|.+++|+|++.+|++++. ||.|++||+.++..+..+..|...|++++|+| ++. ++
T Consensus 225 ----------------~~~~~~v~~~~~~~~~~~l~~~~~-dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~ 286 (814)
T 3mkq_A 225 ----------------EGHMSNVSFAVFHPTLPIIISGSE-DGTLKIWNSSTYKVEKTLNVGLERSWCIATHP-TGRKNY 286 (814)
T ss_dssp ----------------ECCSSCEEEEEECSSSSEEEEEET-TSCEEEEETTTCSEEEEECCSSSSEEEEEECT-TCGGGE
T ss_pred ----------------cCCCCCEEEEEEcCCCCEEEEEeC-CCeEEEEECCCCcEEEEeecCCCcEEEEEEcc-CCCceE
Confidence 236678999999999999999998 99999999999999999999999999999999 654 33
Q ss_pred EEEecCceEEEEECCCCccccceeee--------------------e------------------eecCCCCcceEEEEE
Q psy9598 781 LSAGHDGLIIIWDILSSKQRGYKWFH--------------------N------------------IVEGQGEGALFDGKW 822 (1915)
Q Consensus 781 aSgs~DG~I~IWdl~s~~~~~~~~~~--------------------~------------------~~~~~~~~~V~~vaf 822 (1915)
++++.++.+.+|++..+.. ...+. . .....+...+.+++|
T Consensus 287 ~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (814)
T 3mkq_A 287 IASGFDNGFTVLSLGNDEP--TLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAH 364 (814)
T ss_dssp EEEEETTEEEEEECSCCSC--CEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEE
T ss_pred EEEEeCCCEEEEEcCCCCc--eeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEE
Confidence 5555577888999865433 11110 0 000123346789999
Q ss_pred cCCCCEEEEEeCCCeEEEEeCCCCcccc-cCCCceeecCCCCeeeec-CCCccceeecc
Q psy9598 823 SPDGTTCALTDSYGHLLVYGLGGFKRPQ-NIPRELFFHTDYRTLNRP-NGLFEPTYDEV 879 (1915)
Q Consensus 823 Spdg~~Lasg~~dG~I~Iwdl~s~~~~~-~l~~~~~F~~d~~~Lv~~-~~~~~~v~D~~ 879 (1915)
+|+|++|++++ +|.+.||++....... .-...+.|++|++.++.. ..+.+.+|+..
T Consensus 365 spdg~~la~~~-~~~~~i~~~~~~~~~~~~~i~~~~~spdg~~la~~~~~g~v~l~~~~ 422 (814)
T 3mkq_A 365 SPNGRFVTVVG-DGEYVIYTALAWRNKAFGKCQDFVWGPDSNSYALIDETGQIKYYKNF 422 (814)
T ss_dssp CTTSSEEEEEE-TTEEEEEETTTTEEEEEEECSEEEECTTSSCEEEECTTCCEEEEETT
T ss_pred CCCCCEEEEec-CCEEEEEECccccccCCCceEEEEEeCCCCeEEEEeCCCcEEEEECC
Confidence 99999999998 8999999986543221 223368899999988754 44556788643
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-35 Score=359.96 Aligned_cols=323 Identities=12% Similarity=0.154 Sum_probs=276.2
Q ss_pred CCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCce--
Q psy9598 475 HLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAP-- 552 (1915)
Q Consensus 475 H~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~-- 552 (1915)
|.+.|++++|+|+|++|+++..++.+.+|............+|...|++++|+|++.+|++++ ||.|+|||+.++..
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~ 86 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKS 86 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCS
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCcee
Confidence 457899999999999999998888888877666555555568999999999999999999999 99999999987653
Q ss_pred -EEEee--cCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCC
Q psy9598 553 -ISVLV--GHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPG 629 (1915)
Q Consensus 553 -~~~l~--~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspd 629 (1915)
+..+. +|...|.+++|+|+ +.+|++++.||.|++||+.++...... .+..|...|.+++|+|+
T Consensus 87 ~~~~~~~~~~~~~v~~~~~~~~----~~~l~~~~~d~~i~~~d~~~~~~~~~~----------~~~~~~~~i~~~~~~~~ 152 (337)
T 1gxr_A 87 PVSQLDCLNRDNYIRSCKLLPD----GCTLIVGGEASTLSIWDLAAPTPRIKA----------ELTSSAPACYALAISPD 152 (337)
T ss_dssp CSEEEECSCTTSBEEEEEECTT----SSEEEEEESSSEEEEEECCCC--EEEE----------EEECSSSCEEEEEECTT
T ss_pred eeecccccCCCCcEEEEEEcCC----CCEEEEEcCCCcEEEEECCCCCcceee----------ecccCCCceEEEEECCC
Confidence 33443 79999999999994 489999999999999999876421111 22346678999999999
Q ss_pred CcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCC
Q psy9598 630 GLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLP 709 (1915)
Q Consensus 630 g~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~ 709 (1915)
+.+|++|+.||.|++||+. ....+..+.+|...|.+++|+|++.+|++++.||.|++||+.++......
T Consensus 153 ~~~l~~~~~dg~v~~~d~~---~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~-------- 221 (337)
T 1gxr_A 153 SKVCFSCCSDGNIAVWDLH---NQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQH-------- 221 (337)
T ss_dssp SSEEEEEETTSCEEEEETT---TTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE--------
T ss_pred CCEEEEEeCCCcEEEEeCC---CCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeee--------
Confidence 9999999999999999994 34567778889999999999999999999999999999999987744321
Q ss_pred CCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceE
Q psy9598 710 HTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLI 789 (1915)
Q Consensus 710 ~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I 789 (1915)
.+...+.+++|+|++.+|++++. ++.|++||+.++.. ..+.+|...|.+++|+| ++.+|++++.||.|
T Consensus 222 ---------~~~~~v~~~~~s~~~~~l~~~~~-~~~i~~~~~~~~~~-~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i 289 (337)
T 1gxr_A 222 ---------DFTSQIFSLGYCPTGEWLAVGME-SSNVEVLHVNKPDK-YQLHLHESCVLSLKFAY-CGKWFVSTGKDNLL 289 (337)
T ss_dssp ---------ECSSCEEEEEECTTSSEEEEEET-TSCEEEEETTSSCE-EEECCCSSCEEEEEECT-TSSEEEEEETTSEE
T ss_pred ---------cCCCceEEEEECCCCCEEEEEcC-CCcEEEEECCCCCe-EEEcCCccceeEEEECC-CCCEEEEecCCCcE
Confidence 24567899999999999999988 99999999988775 46778999999999999 99999999999999
Q ss_pred EEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEEeCCCeEEEEeC
Q psy9598 790 IIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGL 843 (1915)
Q Consensus 790 ~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl 843 (1915)
++|++.++.. +... .+...|.+++|+|++.+|++++.||.|++|++
T Consensus 290 ~~~~~~~~~~--~~~~------~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 290 NAWRTPYGAS--IFQS------KESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp EEEETTTCCE--EEEE------ECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred EEEECCCCeE--EEEe------cCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 9999998877 4322 35678999999999999999999999999986
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-35 Score=358.84 Aligned_cols=307 Identities=21% Similarity=0.289 Sum_probs=239.3
Q ss_pred ceeeeEEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCC--cEEEEE-eC-CCCCEEEEEEeCCCCEEEEEeCCC
Q psy9598 465 NLRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDG--KLLATL-RG-CSGEISDIAIDNRNILLAAGTVDK 540 (1915)
Q Consensus 465 ~~~~~~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg--~~~~~l-~g-H~~~I~~Lafspdg~~LaSgs~Dg 540 (1915)
.+.+...|.||.+.|++++|+++ +||+|+.||+|+||++.++ .++..+ .+ |...|.+|+|+|++.+||+|+.|+
T Consensus 3 ~~~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~ 80 (330)
T 2hes_X 3 SINLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDS 80 (330)
T ss_dssp CCEEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTS
T ss_pred ccccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCC
Confidence 34567789999999999999987 9999999999999999875 556666 45 999999999999999999999999
Q ss_pred cEEEEECCC-------CceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccc
Q psy9598 541 TIRIWNLQT-------LAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNER 613 (1915)
Q Consensus 541 tIrVWDl~t-------g~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~ 613 (1915)
+|+|||+.. ..++..+.+|.+.|++++|+|+ +.+|++|+.|++|++||+....... .....
T Consensus 81 ~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~----g~~las~s~D~~v~iwd~~~~~~~~--------~~~~~ 148 (330)
T 2hes_X 81 TVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSND----GYYLATCSRDKSVWIWETDESGEEY--------ECISV 148 (330)
T ss_dssp CEEEEEC-------CCCEEEEEEC----CEEEEEECTT----SCEEEEEETTSCEEEEECCTTCCCC--------EEEEE
T ss_pred cEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCC----CCEEEEEeCCCEEEEEeccCCCCCe--------EEEEE
Confidence 999999853 4567888999999999999994 5899999999999999995432110 11123
Q ss_pred cCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCC--CCEEEEEeCCCcEEEEE
Q psy9598 614 IRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHS--HLRFVSGSRDGTALIWY 691 (1915)
Q Consensus 614 ~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspd--g~~L~sgs~DG~I~IWD 691 (1915)
+..|...|.+++|+|++.+|++|+.|++|+|||+... ....+..+.+|.+.|.+++|+|+ +.+|++|+.||+|+|||
T Consensus 149 ~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~ 227 (330)
T 2hes_X 149 LQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDD-DWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWK 227 (330)
T ss_dssp ECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETT-EEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEE
T ss_pred eccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCC-CeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEE
Confidence 4467889999999999999999999999999998432 22466788999999999999998 67899999999999999
Q ss_pred ccCCceEEeeecccccCCCCcccccc-ccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCc--eEEE-eeCCCC-C
Q psy9598 692 YKCSQWRFIRLDMNTCLPHTKETSDE-TNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGD--LVQV-LKGHTN-E 766 (1915)
Q Consensus 692 l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~--~i~~-l~gH~~-~ 766 (1915)
+..+.... .......... ..|...|.+++|++++ +|++++. ||.|+||+..++. .+.. +.+|.. .
T Consensus 228 ~~~~~~~~--------~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~-dg~v~iw~~~~~~~~~~~~~~~~h~~~~ 297 (330)
T 2hes_X 228 YMGDDEDD--------QQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGA-DGVLAVYEEVDGEWKVFAKRALCHGVYE 297 (330)
T ss_dssp EEEECTTS--------CEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEET-TSCEEEEEEETTEEEEEEEESCTTTTSC
T ss_pred ecCCCccc--------cceeEEeeecccccccceEEEEEcCCC-EEEEEeC-CCEEEEEEcCCCceEEEeccccccccce
Confidence 87542000 0000000011 2267889999999665 7788887 9999999998774 3333 467887 8
Q ss_pred eEEEEEccC-CCCEEEEEecCceEEEEECCC
Q psy9598 767 VFVLESHPF-DSRVLLSAGHDGLIIIWDILS 796 (1915)
Q Consensus 767 V~sl~~sp~-dg~~LaSgs~DG~I~IWdl~s 796 (1915)
|++++|+|. ++.+|+||+.||+|+||++..
T Consensus 298 v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 298 INVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp EEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred EEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 999999995 578999999999999999864
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-35 Score=371.41 Aligned_cols=326 Identities=24% Similarity=0.432 Sum_probs=283.0
Q ss_pred eeEEecCCCCcE-EEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEE
Q psy9598 468 QHYVNLGHLSAV-FCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWN 546 (1915)
Q Consensus 468 ~~~~l~gH~~~V-~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWD 546 (1915)
....+.||.+.| +|+.+ +|++|++|+.||+|+|||+.+++++.++.+|.+.|.+++|+ +.+|++|+.||+|++||
T Consensus 110 ~~~~l~~h~~~v~~~~~~--~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd 185 (445)
T 2ovr_B 110 SPKVLKGHDDHVITCLQF--CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWN 185 (445)
T ss_dssp CCEEEECSTTSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEE
T ss_pred eeEEecccCCCcEEEEEE--cCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEE
Confidence 345788999875 66555 58999999999999999999999999999999999999998 56999999999999999
Q ss_pred CCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEE
Q psy9598 547 LQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSF 626 (1915)
Q Consensus 547 l~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~f 626 (1915)
+.++.++..+.+|...|.++.|++ ..|++|+.||+|++||+.++..+..+ ..|...|.+++|
T Consensus 186 ~~~~~~~~~~~~h~~~v~~~~~~~------~~l~s~s~dg~i~~wd~~~~~~~~~~------------~~~~~~v~~~~~ 247 (445)
T 2ovr_B 186 AETGECIHTLYGHTSTVRCMHLHE------KRVVSGSRDATLRVWDIETGQCLHVL------------MGHVAAVRCVQY 247 (445)
T ss_dssp TTTTEEEEEECCCSSCEEEEEEET------TEEEEEETTSEEEEEESSSCCEEEEE------------ECCSSCEEEEEE
T ss_pred CCcCcEEEEECCCCCcEEEEEecC------CEEEEEeCCCEEEEEECCCCcEEEEE------------cCCcccEEEEEE
Confidence 999999999999999999999975 68999999999999999887543322 346788999999
Q ss_pred CCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccc
Q psy9598 627 SPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNT 706 (1915)
Q Consensus 627 spdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~ 706 (1915)
++.+|++|+.||.|++||+. ....+..+.+|...|.+++| ++.+|++|+.||.|++||+.+++.....
T Consensus 248 --~~~~l~~~~~dg~i~iwd~~---~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~----- 315 (445)
T 2ovr_B 248 --DGRRVVSGAYDFMVKVWDPE---TETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTL----- 315 (445)
T ss_dssp --CSSCEEEEETTSCEEEEEGG---GTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEE-----
T ss_pred --CCCEEEEEcCCCEEEEEECC---CCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEE-----
Confidence 78899999999999999984 34567788899999999999 7889999999999999999988754322
Q ss_pred cCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeC---CCCCeEEEEEccCCCCEEEEE
Q psy9598 707 CLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKG---HTNEVFVLESHPFDSRVLLSA 783 (1915)
Q Consensus 707 ~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~g---H~~~V~sl~~sp~dg~~LaSg 783 (1915)
..+...+.++.+ ++.+|++++. ||.|++||+.+++++..+.+ |...|++++|++ .+|++|
T Consensus 316 -----------~~~~~~v~~~~~--~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~s~ 378 (445)
T 2ovr_B 316 -----------TGHQSLTSGMEL--KDNILVSGNA-DSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK---NFVITS 378 (445)
T ss_dssp -----------CCCCSCEEEEEE--ETTEEEEEET-TSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECS---SEEEEE
T ss_pred -----------cCCcccEEEEEE--eCCEEEEEeC-CCeEEEEECCCCcEEEEEccCCCCCCCEEEEEECC---CEEEEE
Confidence 235566777777 4678998888 99999999999999999987 888999999964 899999
Q ss_pred ecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEEeCCCe----EEEEeCCCC
Q psy9598 784 GHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGH----LLVYGLGGF 846 (1915)
Q Consensus 784 s~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~dG~----I~Iwdl~s~ 846 (1915)
+.||.|+|||+.+++. +..+.......+.+.|++++|+|+|.+||+|+.||. |.|||+...
T Consensus 379 ~~dg~v~iwd~~~~~~--~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 379 SDDGTVKLWDLKTGEF--IRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVD 443 (445)
T ss_dssp ETTSEEEEEETTTCCE--EEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred eCCCeEEEEECCCCce--eeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCCC
Confidence 9999999999999987 666644344566789999999999999999999998 999998753
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-37 Score=384.28 Aligned_cols=343 Identities=11% Similarity=0.218 Sum_probs=279.6
Q ss_pred CCCcEEEEEEcCCCC-EEEEE----------ECCCcEEEEECCCCc---EEEEEeCCCCCEEEEEEeCCCCEEEEEeCCC
Q psy9598 475 HLSAVFCVLFDKLGE-VIVTG----------ADDLLIKLWRARDGK---LLATLRGCSGEISDIAIDNRNILLAAGTVDK 540 (1915)
Q Consensus 475 H~~~V~~vafspdg~-~LaTG----------s~Dg~I~IWd~~tg~---~~~~l~gH~~~I~~Lafspdg~~LaSgs~Dg 540 (1915)
|...|+|++|+|+|. +||+| +.||.|+||++.++. ++..+ .|...|++++|+|++.+|++|+.||
T Consensus 11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg 89 (416)
T 2pm9_A 11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKIIAGALDNG 89 (416)
T ss_dssp EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEESSS
T ss_pred hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEccCC
Confidence 345788999999987 99999 899999999999875 44444 5889999999999999999999999
Q ss_pred cEEEEECCC----CceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCC
Q psy9598 541 TIRIWNLQT----LAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRP 616 (1915)
Q Consensus 541 tIrVWDl~t----g~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~ 616 (1915)
.|+|||+.+ ...+..+.+|...|++++|+|+ ++.+|++|+.||+|++||+.++....... ..........
T Consensus 90 ~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~~l~s~~~dg~v~iwd~~~~~~~~~~~---~~~~~~~~~~ 163 (416)
T 2pm9_A 90 SLELYSTNEANNAINSMARFSNHSSSVKTVKFNAK---QDNVLASGGNNGEIFIWDMNKCTESPSNY---TPLTPGQSMS 163 (416)
T ss_dssp CEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSS---STTBEEEECSSSCEEBCBTTTTSSCTTTC---CCBCCCCSCC
T ss_pred eEEEeecccccccccchhhccCCccceEEEEEcCC---CCCEEEEEcCCCeEEEEECCCCccccccc---cccccccccC
Confidence 999999987 4588899999999999999994 25899999999999999998875211000 0000112345
Q ss_pred CCCceEEEEECCC-CcEEEEEeCCCeEEEEEecCCCCCceeEEeccC------CCCeeEEEEcCCC-CEEEEEeCCC---
Q psy9598 617 GNAHILCSSFSPG-GLFLATGSGDHHVRVYKMDGVDSPLGILEVEEH------SDKVDSIQWSHSH-LRFVSGSRDG--- 685 (1915)
Q Consensus 617 ~~~~V~~l~fspd-g~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h------~~~V~sl~fspdg-~~L~sgs~DG--- 685 (1915)
|...|.+++|+|+ +.+|++|+.||.|++||+.. ...+..+..| ...|.+++|+|++ .+|++++.||
T Consensus 164 ~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~ 240 (416)
T 2pm9_A 164 SVDEVISLAWNQSLAHVFASAGSSNFASIWDLKA---KKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDP 240 (416)
T ss_dssp SSCCCCEEEECSSCTTEEEEESSSSCEEEEETTT---TEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSC
T ss_pred CCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCC---CCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCc
Confidence 7788999999999 78999999999999999943 3455556555 7899999999997 6899999999
Q ss_pred cEEEEEccCCceEEeeecccccCCCCccccccc-cccccEEEEEECC-CCCEEEEEEecCCeEEEEECCCCceEEEeeCC
Q psy9598 686 TALIWYYKCSQWRFIRLDMNTCLPHTKETSDET-NKKIKVTMVAWDA-SDRWVITAINFNFQIKIWDAFNGDLVQVLKGH 763 (1915)
Q Consensus 686 ~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~V~~va~sp-dg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH 763 (1915)
.|++||++++... ..... .|...|.+++|+| ++.+|++++. ||.|++||+.+++++..+.+|
T Consensus 241 ~i~~~d~~~~~~~---------------~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~-dg~v~~wd~~~~~~~~~~~~~ 304 (416)
T 2pm9_A 241 SILIWDLRNANTP---------------LQTLNQGHQKGILSLDWCHQDEHLLLSSGR-DNTVLLWNPESAEQLSQFPAR 304 (416)
T ss_dssp CCCEEETTSTTSC---------------SBCCCSCCSSCEEEEEECSSCSSCEEEEES-SSEEEEECSSSCCEEEEEECS
T ss_pred eEEEEeCCCCCCC---------------cEEeecCccCceeEEEeCCCCCCeEEEEeC-CCCEEEeeCCCCccceeecCC
Confidence 9999999875311 11122 5778899999999 8999999998 999999999999999999999
Q ss_pred CCCeEEEEEccCCC-CEEEEEecCceEEEEECCCCccccceeeee------------e------------------ecCC
Q psy9598 764 TNEVFVLESHPFDS-RVLLSAGHDGLIIIWDILSSKQRGYKWFHN------------I------------------VEGQ 812 (1915)
Q Consensus 764 ~~~V~sl~~sp~dg-~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~------------~------------------~~~~ 812 (1915)
...|++++|+| ++ .+|++++.||.|+||++.+... ...... + ....
T Consensus 305 ~~~v~~~~~s~-~~~~~l~s~~~d~~i~iw~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (416)
T 2pm9_A 305 GNWCFKTKFAP-EAPDLFACASFDNKIEVQTLQNLTN--TLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTW 381 (416)
T ss_dssp SSCCCCEEECT-TCTTEEEECCSSSEEEEEESCCCCC--SSCC----------------------CCSCCCSSCCCCCST
T ss_pred CCceEEEEECC-CCCCEEEEEecCCcEEEEEccCCCC--CcccccccccccCCcccccccccccccccccccccccCCcc
Confidence 99999999999 66 8999999999999999988764 111100 0 0001
Q ss_pred CCcceEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q psy9598 813 GEGALFDGKWSPDGTTCALTDSYGHLLVYGLGGF 846 (1915)
Q Consensus 813 ~~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl~s~ 846 (1915)
+...+.+++|+|+|++||+++.||.|+||++.+.
T Consensus 382 ~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 382 YGEPSPAAHWAFGGKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp TCCCSCCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred ccCCccceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence 3456778999999999999999999999998764
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-34 Score=353.52 Aligned_cols=305 Identities=21% Similarity=0.315 Sum_probs=255.8
Q ss_pred EEEecccCCceeeeEEecCCCCcEEEEEEcCC-CCEEEEEECCCcEEEEECCCC-----cEEEEEeCCCCCEEEEEEeCC
Q psy9598 456 LMISSHKYSNLRQHYVNLGHLSAVFCVLFDKL-GEVIVTGADDLLIKLWRARDG-----KLLATLRGCSGEISDIAIDNR 529 (1915)
Q Consensus 456 ~~i~~~~~~~~~~~~~l~gH~~~V~~vafspd-g~~LaTGs~Dg~I~IWd~~tg-----~~~~~l~gH~~~I~~Lafspd 529 (1915)
+.++......+.+..+|.||.+.|+||+|+|+ +++|||||.||+|+|||+.++ .+..++.+|...|++++|+|+
T Consensus 18 ~~~~~~~~~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~d 97 (340)
T 4aow_A 18 LYFQSMMTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSD 97 (340)
T ss_dssp --------CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTT
T ss_pred EEEEEccCCceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCC
Confidence 33444556677788899999999999999997 689999999999999998764 367789999999999999999
Q ss_pred CCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccc
Q psy9598 530 NILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVM 609 (1915)
Q Consensus 530 g~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~ 609 (1915)
+.+|++|+.|+.|++|+...+........+...+..+.+++. +.+|++|+.|+.+++||+......
T Consensus 98 g~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~s~s~d~~~~~~d~~~~~~~---------- 163 (340)
T 4aow_A 98 GQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSD----NRQIVSGSRDKTIKLWNTLGVCKY---------- 163 (340)
T ss_dssp SSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTT----SSCEEEEETTSCEEEECTTSCEEE----------
T ss_pred CCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeec----CccceeecCCCeEEEEEeCCCceE----------
Confidence 999999999999999999999999999999999999999984 489999999999999998754321
Q ss_pred cccccCCCCCceEEEEECCCC--cEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcE
Q psy9598 610 FNERIRPGNAHILCSSFSPGG--LFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTA 687 (1915)
Q Consensus 610 ~~~~~~~~~~~V~~l~fspdg--~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I 687 (1915)
......|...+.+++|++++ .++++|+.|+.|++||+. ....+..+.+|.+.|.+|+|+|++.+|++|+.||.|
T Consensus 164 -~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~---~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i 239 (340)
T 4aow_A 164 -TVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLA---NCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQA 239 (340)
T ss_dssp -EECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETT---TTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEE
T ss_pred -EEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECC---CCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeE
Confidence 11233567889999999865 578899999999999993 455677889999999999999999999999999999
Q ss_pred EEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEee------
Q psy9598 688 LIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLK------ 761 (1915)
Q Consensus 688 ~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~------ 761 (1915)
++||+.+....... .+...|.+++|+|++.+++ ++. |+.|+|||+.++.++..+.
T Consensus 240 ~iwd~~~~~~~~~~-----------------~~~~~v~~~~~~~~~~~~~-~~~-d~~i~iwd~~~~~~~~~~~~~~~~~ 300 (340)
T 4aow_A 240 MLWDLNEGKHLYTL-----------------DGGDIINALCFSPNRYWLC-AAT-GPSIKIWDLEGKIIVDELKQEVIST 300 (340)
T ss_dssp EEEETTTTEEEEEE-----------------ECSSCEEEEEECSSSSEEE-EEE-TTEEEEEETTTTEEEEEECCC----
T ss_pred EEEEeccCceeeee-----------------cCCceEEeeecCCCCceee-ccC-CCEEEEEECCCCeEEEeccccceee
Confidence 99999987754422 1335689999999886654 555 9999999999887776654
Q ss_pred ---CCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCc
Q psy9598 762 ---GHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSK 798 (1915)
Q Consensus 762 ---gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~ 798 (1915)
+|...|++|+|+| ++.+|+||+.||+|+|||+.+|.
T Consensus 301 ~~~~h~~~v~~l~~s~-dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 301 SSKAEPPQCTSLAWSA-DGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp ---CCCCCEEEEEECT-TSSEEEEEETTSCEEEEEEEC--
T ss_pred eccCCCCCEEEEEECC-CCCEEEEEeCCCEEEEEeCCCcC
Confidence 6888999999999 99999999999999999998875
|
| >2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-37 Score=375.54 Aligned_cols=239 Identities=21% Similarity=0.287 Sum_probs=180.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCccCCCCCCCCCCCCCccccccCCCCCHHHHHHHhcCCCCCCHHHHHHHHHHHHHh
Q psy9598 1365 EWPQGDRDATCEKIITGLEEVMGLSVAEPFLVPVDISQYPAYAYVVEYPVDLTTLRARFQNRFYRRITSAQFDVRYLAAN 1444 (1915)
Q Consensus 1365 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~tI~~rl~~~~Y~~~~~~~~D~~l~~~N 1444 (1915)
+|.-..-...|..++..+.. .++.++++|+.||+...+||||+||++||||+||++|| ..+|.++++|.+||+|||+|
T Consensus 73 ~~~~~~~~~~~~~~l~~l~~-~~~~~~~~F~~p~~~~~~PdY~~iIk~Pmdl~tI~~kl-~~y~~~~~~f~~D~~li~~N 150 (361)
T 2r10_A 73 DWHIPKFNRFISFTLDVLID-KYKDIFKDFIKLPSRKFHPQYYYKIQQPMSINEIKSRD-YEYEDGPSNFLLDVELLTKN 150 (361)
T ss_dssp CCCCTTHHHHHHHHHHHHHH-HTHHHHGGGSSCCCTTTCTTHHHHCSSCCCHHHHHTSC-CCSTTHHHHHHHHHHHHHHH
T ss_pred hhcchHHHHHHHHHHHHHHH-cCCcccHHhcCCCCcccCCChHhhcCCCcCHHHHHHHh-hccCCCHHHHHHHHHHHHHH
Confidence 45444456677777776654 35678999999999999999999999999999999999 34444899999999999999
Q ss_pred hhhhcCCCCHHHHHHHHHHHHHHHHHhCCCCCCccchhhhhcccccCCCChhhhhhhhhhhccccCCcchhhhhHHHhhh
Q psy9598 1445 AEKFNEPHSNIVKYARIITDLLLRIIKEPNPVDVPVVYHELLQNYETSSSEEEEEEDSKSRQRRVRPTAVTRAQREAMNQ 1524 (1915)
Q Consensus 1445 a~~yN~~~s~i~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1524 (1915)
|.+||+++|.|+++|..|.++|.+.+...... ...... . . + .+ .+........
T Consensus 151 a~~yN~~~s~i~~~a~~l~~~~~~~~~k~k~~---------~~~~~i-~-~---~--~k-----------~~l~~~~~~l 203 (361)
T 2r10_A 151 CQAYNEYDSLIVKNSMQVVMLIEFEVLKAKNL---------KRNYLI-N-S---E--VK-----------AKLLHYLNKL 203 (361)
T ss_dssp HHHHBCSSSHHHHHHHHHHHHHHHHHHHHHTT---------TTCCBC-C-H---H--HH-----------HHHHHHHHHH
T ss_pred HhhcCCCCCHHHHHHHHHHHHHHHHHhhcccc---------CCcCcC-C-H---H--HH-----------HHHHHHHHHh
Confidence 99999999999999999999998877642100 000000 0 0 0 00 0000000000
Q ss_pred hhcCCchhhHHHHHHHHHHH-------HcCCCCCCCCCCCCCCCCCCccccccCccchhhHHhhhcCCCCCCHHHHHHHH
Q psy9598 1525 KKLKRPFNWKNECREVLETL-------WVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDV 1597 (1915)
Q Consensus 1525 ~~~~~~~~~~~~~~~ll~~l-------~~~~~s~~F~~pv~~~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~Dv 1597 (1915)
.... ...+..++... ..++.++||+.|||..++||||+||++||||+||++||++|.|.++++|..||
T Consensus 204 -~~~~----~~~i~~~~~~~r~~~~~~~~~~~s~~F~~pvd~~~~PdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv 278 (361)
T 2r10_A 204 -VDAT----EKKINQALLGASSPKNLDDKVKLSEPFMELVDKDELPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDM 278 (361)
T ss_dssp -HHCC----HHHHHHHHHGGGCCSSCCCSSCTTGGGSSCCCTTTCTHHHHHCSSCCCHHHHHHHHHHTCCCBHHHHHHHH
T ss_pred -hccc----hHHHHHHHhccccccccccCCcchhcccCCCChhhcccHHHHhcCcccHHHHHHHHhcCCCCCHHHHHHHH
Confidence 0000 00111111111 13577999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHH-HHHHhh
Q psy9598 1598 KRVFHNSRNYNQNKRSKIYIMTTRLSEFAEEHLRR-LTVRWN 1638 (1915)
Q Consensus 1598 ~lif~Na~~yN~~~~s~i~~~a~~l~~~f~~~~~~-~~~~~~ 1638 (1915)
+|||+||++||+++ |.||.+|..|+++|+.++++ +...+.
T Consensus 279 ~Lif~N~~~yN~~~-s~i~~~A~~L~~~f~~~~~~~~~p~~~ 319 (361)
T 2r10_A 279 LLVFQNAHIFNDPS-ALIYKDATTLTNYFNYLIQKEFFPELQ 319 (361)
T ss_dssp HHHHHHHHHHSCTT-SHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHHHhcCCcch
Confidence 99999999999987 99999999999999999998 344443
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-34 Score=357.98 Aligned_cols=296 Identities=16% Similarity=0.205 Sum_probs=257.3
Q ss_pred cEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeE
Q psy9598 509 KLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCI 588 (1915)
Q Consensus 509 ~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI 588 (1915)
....+|.||.+.|++|+|+|++.+||||+.||+|+|||+.++.....+..|...|.+++|+|+ +.+|++|+.|+.|
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~----g~~lasg~~d~~i 130 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPS----GCAIACGGLDNKC 130 (354)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTT----SSEEEEESTTSEE
T ss_pred EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCC----CCEEEEeeCCCCE
Confidence 466789999999999999999999999999999999999999999999999999999999994 5899999999999
Q ss_pred EEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeE
Q psy9598 589 GFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDS 668 (1915)
Q Consensus 589 ~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~s 668 (1915)
++|++......... .....+..|...|.+++|+|++..|++|+.||+|++||+. ....+..+.+|...|.+
T Consensus 131 ~v~~~~~~~~~~~~------~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~---~~~~~~~~~~h~~~v~~ 201 (354)
T 2pbi_B 131 SVYPLTFDKNENMA------AKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVE---SGQLLQSFHGHGADVLC 201 (354)
T ss_dssp EEEECCCCTTCCSG------GGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETT---TCCEEEEEECCSSCEEE
T ss_pred EEEEEecccccccc------ccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCC---CCeEEEEEcCCCCCeEE
Confidence 99998754321110 1122334678899999999999999999999999999994 44567788999999999
Q ss_pred EEEcC--CCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeE
Q psy9598 669 IQWSH--SHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQI 746 (1915)
Q Consensus 669 l~fsp--dg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I 746 (1915)
++|+| +|.+|++|+.||+|++||++++++... ...|...|++++|+|++.+|++++. |++|
T Consensus 202 ~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~----------------~~~h~~~v~~v~~~p~~~~l~s~s~-D~~v 264 (354)
T 2pbi_B 202 LDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQA----------------FETHESDVNSVRYYPSGDAFASGSD-DATC 264 (354)
T ss_dssp EEECCCSSCCEEEEEETTSCEEEEETTTCCEEEE----------------ECCCSSCEEEEEECTTSSEEEEEET-TSCE
T ss_pred EEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEE----------------ecCCCCCeEEEEEeCCCCEEEEEeC-CCeE
Confidence 99987 478999999999999999998875432 2347788999999999999999998 9999
Q ss_pred EEEECCCCceEEEeeCC--CCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcC
Q psy9598 747 KIWDAFNGDLVQVLKGH--TNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSP 824 (1915)
Q Consensus 747 ~vwD~~tg~~i~~l~gH--~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSp 824 (1915)
++||+.++..+..+..+ ...+.+++|+| ++.+|++|+.||+|+|||+.++.. +..+. .|.+.|.+++|+|
T Consensus 265 ~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~-~g~~l~~g~~d~~i~vwd~~~~~~--~~~l~-----~h~~~v~~l~~sp 336 (354)
T 2pbi_B 265 RLYDLRADREVAIYSKESIIFGASSVDFSL-SGRLLFAGYNDYTINVWDVLKGSR--VSILF-----GHENRVSTLRVSP 336 (354)
T ss_dssp EEEETTTTEEEEEECCTTCCSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCSE--EEEEC-----CCSSCEEEEEECT
T ss_pred EEEECCCCcEEEEEcCCCcccceeEEEEeC-CCCEEEEEECCCcEEEEECCCCce--EEEEE-----CCCCcEEEEEECC
Confidence 99999999888777644 34789999999 999999999999999999988876 54443 5678999999999
Q ss_pred CCCEEEEEeCCCeEEEEe
Q psy9598 825 DGTTCALTDSYGHLLVYG 842 (1915)
Q Consensus 825 dg~~Lasg~~dG~I~Iwd 842 (1915)
+|.+||+|+.||.|+||+
T Consensus 337 dg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 337 DGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp TSSCEEEEETTSEEEEEC
T ss_pred CCCEEEEEcCCCCEEecC
Confidence 999999999999999995
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-35 Score=400.88 Aligned_cols=386 Identities=18% Similarity=0.190 Sum_probs=313.5
Q ss_pred ccccccCCCeEEEecccCCceeeeEEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEE
Q psy9598 446 REYSGPLSRSLMISSHKYSNLRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIA 525 (1915)
Q Consensus 446 r~~tg~~d~~~~i~~~~~~~~~~~~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~La 525 (1915)
..++|+.++.+.+|+... ......+.+|.+.|++++|+|+|.+||+|+.||.|+|||+.++..+.++.+|.+.|++++
T Consensus 27 ~la~~~~~g~v~iwd~~~--~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~ 104 (814)
T 3mkq_A 27 WVLTTLYSGRVEIWNYET--QVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIA 104 (814)
T ss_dssp EEEEEETTSEEEEEETTT--TEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEE
T ss_pred EEEEEeCCCEEEEEECCC--CceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEE
Confidence 345677889999997543 456678889999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCEEEEEeCCCcEEEEECCCC-ceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceec
Q psy9598 526 IDNRNILLAAGTVDKTIRIWNLQTL-APISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVF 604 (1915)
Q Consensus 526 fspdg~~LaSgs~DgtIrVWDl~tg-~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~ 604 (1915)
|+|++.+|++|+.||+|+|||+.++ .....+.+|...|.+++|+|. ++..|++++.||+|++||+.++........
T Consensus 105 ~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~---~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~ 181 (814)
T 3mkq_A 105 VHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPK---DPSTFASGCLDRTVKVWSLGQSTPNFTLTT 181 (814)
T ss_dssp ECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETT---EEEEEEEEETTSEEEEEETTCSSCSEEEEC
T ss_pred EeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcC---CCCEEEEEeCCCeEEEEECCCCcceeEEec
Confidence 9999999999999999999999987 677888999999999999992 348999999999999999987654332221
Q ss_pred cCccccccccCCCCCceEEEEECC--CCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEe
Q psy9598 605 HEPVMFNERIRPGNAHILCSSFSP--GGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGS 682 (1915)
Q Consensus 605 ~~~~~~~~~~~~~~~~V~~l~fsp--dg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs 682 (1915)
.+...+.+++|+| ++.+|++|+.||.|++||+. ....+..+.+|...|.+++|+|++.+|++|+
T Consensus 182 -----------~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 247 (814)
T 3mkq_A 182 -----------GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQ---TKSCVATLEGHMSNVSFAVFHPTLPIIISGS 247 (814)
T ss_dssp -----------CCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETT---TTEEEEEEECCSSCEEEEEECSSSSEEEEEE
T ss_pred -----------CCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECC---CCcEEEEEcCCCCCEEEEEEcCCCCEEEEEe
Confidence 2336789999999 99999999999999999983 3456777889999999999999999999999
Q ss_pred CCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEE-EEEEecCCeEEEEECCCCceEE---
Q psy9598 683 RDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWV-ITAINFNFQIKIWDAFNGDLVQ--- 758 (1915)
Q Consensus 683 ~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L-~t~s~~Dg~I~vwD~~tg~~i~--- 758 (1915)
.||.|++||+.++...... ..+...+.+++|+|++..+ ++++. ++.+.+|++..+....
T Consensus 248 ~dg~v~vwd~~~~~~~~~~----------------~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 310 (814)
T 3mkq_A 248 EDGTLKIWNSSTYKVEKTL----------------NVGLERSWCIATHPTGRKNYIASGF-DNGFTVLSLGNDEPTLSLD 310 (814)
T ss_dssp TTSCEEEEETTTCSEEEEE----------------CCSSSSEEEEEECTTCGGGEEEEEE-TTEEEEEECSCCSCCEEEC
T ss_pred CCCeEEEEECCCCcEEEEe----------------ecCCCcEEEEEEccCCCceEEEEEe-CCCEEEEEcCCCCceeEEC
Confidence 9999999999887644322 2345689999999999743 44455 7889999876432211
Q ss_pred ----------------------------------------EeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCc
Q psy9598 759 ----------------------------------------VLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSK 798 (1915)
Q Consensus 759 ----------------------------------------~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~ 798 (1915)
.+..|...+.+++|+| ++.+|++++ ||.+.||++....
T Consensus 311 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~la~~~-~~~~~i~~~~~~~ 388 (814)
T 3mkq_A 311 PVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSP-NGRFVTVVG-DGEYVIYTALAWR 388 (814)
T ss_dssp SSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECT-TSSEEEEEE-TTEEEEEETTTTE
T ss_pred CCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECC-CCCEEEEec-CCEEEEEECcccc
Confidence 1123455688999999 999999998 8999999985433
Q ss_pred cccceeeeeeecCCCCcceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcccccCCCceeecCCC----CeeeecCCCccc
Q psy9598 799 QRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGGFKRPQNIPRELFFHTDY----RTLNRPNGLFEP 874 (1915)
Q Consensus 799 ~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl~s~~~~~~l~~~~~F~~d~----~~Lv~~~~~~~~ 874 (1915)
. .+.+.|.+++|+|+|++||+++.+|.|.+|+.-.+.. .....+.|++++ ..+.....+.+.
T Consensus 389 ~------------~~~~~i~~~~~spdg~~la~~~~~g~v~l~~~~~~~~--~~v~~~~~s~dg~~~~~l~~~~~d~~v~ 454 (814)
T 3mkq_A 389 N------------KAFGKCQDFVWGPDSNSYALIDETGQIKYYKNFKEVT--SWSVPMHSAIDRLFSGALLGVKSDGFVY 454 (814)
T ss_dssp E------------EEEEECSEEEECTTSSCEEEECTTCCEEEEETTEECT--TCCCCCSSCCCEEECSSSEEEEETTEEE
T ss_pred c------------cCCCceEEEEEeCCCCeEEEEeCCCcEEEEECCCCcc--ceEEcCCcCccceecceEEEEecCCEEE
Confidence 2 1236788999999999999999999999997543321 223456788987 444445556677
Q ss_pred eeecccCCC
Q psy9598 875 TYDEVTNLP 883 (1915)
Q Consensus 875 v~D~~t~~~ 883 (1915)
+||+.++..
T Consensus 455 ~~d~~~~~~ 463 (814)
T 3mkq_A 455 FFDWDNGTL 463 (814)
T ss_dssp EECTTTCCE
T ss_pred EEECCcCcE
Confidence 999877643
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-34 Score=351.94 Aligned_cols=306 Identities=17% Similarity=0.259 Sum_probs=267.6
Q ss_pred eeeEEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEE
Q psy9598 467 RQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWN 546 (1915)
Q Consensus 467 ~~~~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWD 546 (1915)
.....|.||.+.|+||+|+|+|.+||+|+.||.|+|||+.+++.+..+.+|...|++++|+|++.+|++|+.||.|+|||
T Consensus 23 ~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 102 (369)
T 3zwl_B 23 MKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWD 102 (369)
T ss_dssp EEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEE
T ss_pred cccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence 33457889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCC-----CeEEEEecccCccccceeccCccccccccCCCCC--
Q psy9598 547 LQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTD-----GCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNA-- 619 (1915)
Q Consensus 547 l~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~D-----gtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~-- 619 (1915)
+.++.++..+. |...|.+++|+|. +.+|++++.+ |.|.+||+.............. .....+..+..
T Consensus 103 ~~~~~~~~~~~-~~~~v~~~~~~~~----~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 176 (369)
T 3zwl_B 103 VSNGQCVATWK-SPVPVKRVEFSPC----GNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSE-EPIHKIITHEGLD 176 (369)
T ss_dssp TTTCCEEEEEE-CSSCEEEEEECTT----SSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECS-SCSEEEECCTTCC
T ss_pred CCCCcEEEEee-cCCCeEEEEEccC----CCEEEEecCCccCCCCEEEEEEecCCccceeeccccc-ceeeeccCCcCcc
Confidence 99999999888 8899999999994 4899999999 9999999988765433322211 11112223334
Q ss_pred ceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEE
Q psy9598 620 HILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRF 699 (1915)
Q Consensus 620 ~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~ 699 (1915)
.+.+++|+|++.+|++|+.||.|++||+... ...+..+..|...|.+++|+|++.+|++++.||.|++||+.++....
T Consensus 177 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~ 254 (369)
T 3zwl_B 177 AATVAGWSTKGKYIIAGHKDGKISKYDVSNN--YEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLK 254 (369)
T ss_dssp CEEEEEECGGGCEEEEEETTSEEEEEETTTT--TEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred ceeEEEEcCCCCEEEEEcCCCEEEEEECCCC--cEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceee
Confidence 8999999999999999999999999999431 45667788899999999999999999999999999999999887554
Q ss_pred eeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCC--------------eEEEEECCCCceEEEeeCCCC
Q psy9598 700 IRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNF--------------QIKIWDAFNGDLVQVLKGHTN 765 (1915)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg--------------~I~vwD~~tg~~i~~l~gH~~ 765 (1915)
... +...+.+++|+|++.++++++. ++ .|++||+.+++.+..+.+|..
T Consensus 255 ~~~-----------------~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~ 316 (369)
T 3zwl_B 255 KYE-----------------TDCPLNTAVITPLKEFIILGGG-QEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFG 316 (369)
T ss_dssp EEE-----------------CSSCEEEEEECSSSSEEEEEEC-CC-------------CEEEEEETTTCCEEEEEECCSS
T ss_pred eec-----------------CCCCceeEEecCCCceEEEeec-CCCceEEEEecCCCcceeEEEecCCCcchhheecccC
Confidence 321 4567899999999999999998 66 899999999999999999999
Q ss_pred CeEEEEEccCCCCEEEEEecCceEEEEECCCCcc
Q psy9598 766 EVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQ 799 (1915)
Q Consensus 766 ~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~ 799 (1915)
.|++++|+| ++.+|++|+.||.|+||++..+..
T Consensus 317 ~v~~~~~s~-~~~~l~s~~~dg~v~iw~~~~~~~ 349 (369)
T 3zwl_B 317 PLNTVAISP-QGTSYASGGEDGFIRLHHFEKSYF 349 (369)
T ss_dssp CEEEEEECT-TSSEEEEEETTSEEEEEEECHHHH
T ss_pred cEEEEEECC-CCCEEEEEcCCCeEEEEECccccc
Confidence 999999999 999999999999999999987554
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-35 Score=361.19 Aligned_cols=305 Identities=15% Similarity=0.155 Sum_probs=236.8
Q ss_pred EEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCC-----------CceEEEeecCCCCeEEEEe
Q psy9598 500 IKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQT-----------LAPISVLVGHQGIITGVNF 568 (1915)
Q Consensus 500 I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~t-----------g~~~~~l~~h~~~V~sl~f 568 (1915)
.+.|++....+ ..|...|.+++|+|||++|++++ |+++++||... .........|...|++++|
T Consensus 16 ~r~w~~~~~~~----~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 90 (344)
T 4gqb_B 16 AREWNLPPNAP----ACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTW 90 (344)
T ss_dssp -------CCSC----SSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEE
T ss_pred ccccCCCCCCc----ccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEE
Confidence 45677654432 35778899999999999999888 77888887321 1111222346678999999
Q ss_pred ccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEec
Q psy9598 569 CPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMD 648 (1915)
Q Consensus 569 sp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~ 648 (1915)
+|+ ..|++|+.||+|+|||+.++..+..... ...+|...|++++|+|+|.+|++|+.||+|+|||+
T Consensus 91 s~d-----~~l~~~s~dg~v~lWd~~~~~~~~~~~~--------~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~- 156 (344)
T 4gqb_B 91 VGE-----RGILVASDSGAVELWELDENETLIVSKF--------CKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDL- 156 (344)
T ss_dssp ETT-----TEEEEEETTSEEEEEEECTTSSCEEEEE--------EEECCSSCEEEEEECTTSSEEEEEETTSCEEEEET-
T ss_pred eCC-----CeEEEEECCCEEEEEeccCCCceeEeec--------cccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEEC-
Confidence 984 4789999999999999998865433322 23467899999999999999999999999999999
Q ss_pred CCCCCceeEEeccCCCCeeEEEEcCCCC-EEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEE
Q psy9598 649 GVDSPLGILEVEEHSDKVDSIQWSHSHL-RFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMV 727 (1915)
Q Consensus 649 ~~~~~~~i~~l~~h~~~V~sl~fspdg~-~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v 727 (1915)
.....+..+.+|.+.|.+++|++++. +|++|+.||+|+|||+++++..... ....+...+.++
T Consensus 157 --~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~--------------~~~~~~~~~~~~ 220 (344)
T 4gqb_B 157 --AQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQI--------------GCSAPGYLPTSL 220 (344)
T ss_dssp --TTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEEC--------------C----CCCEEEE
T ss_pred --CCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeee--------------ecceeeccceee
Confidence 34567888999999999999999985 7899999999999999988744321 112345578999
Q ss_pred EECCCC-CEEEEEEecCCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeee
Q psy9598 728 AWDASD-RWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFH 806 (1915)
Q Consensus 728 a~spdg-~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~ 806 (1915)
+|+|++ .+|++++. ||.|+|||+.+++++..+.+|...|++|+|+|....+|+||+.||+|+|||+.+++. +. +
T Consensus 221 ~~~p~~~~~l~sg~~-dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~--~~-~- 295 (344)
T 4gqb_B 221 AWHPQQSEVFVFGDE-NGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSEL--FR-S- 295 (344)
T ss_dssp EECSSCTTEEEEEET-TSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEE--EE-E-
T ss_pred eecCCCCcceEEecc-CCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcE--EE-E-
Confidence 999965 56667776 999999999999999999999999999999993347899999999999999988765 22 2
Q ss_pred eeecCCCCcceEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCcc
Q psy9598 807 NIVEGQGEGALFDGKWSPDGT-TCALTDSYGHLLVYGLGGFKR 848 (1915)
Q Consensus 807 ~~~~~~~~~~V~~vafSpdg~-~Lasg~~dG~I~Iwdl~s~~~ 848 (1915)
..|.+.|++++|+|++. +|++|+.||.|++|++.+...
T Consensus 296 ----~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~~ 334 (344)
T 4gqb_B 296 ----QAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEPL 334 (344)
T ss_dssp ----CCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC---
T ss_pred ----cCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCCC
Confidence 25678999999999986 677899999999999987543
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-34 Score=381.84 Aligned_cols=362 Identities=12% Similarity=0.088 Sum_probs=288.0
Q ss_pred CeEEEecccCCceeeeEEecCCCCcEEEEEEcCCCC-EEEEEECCCcEEEEECCCCcEEEEEeCCCC---CEEEEEEeCC
Q psy9598 454 RSLMISSHKYSNLRQHYVNLGHLSAVFCVLFDKLGE-VIVTGADDLLIKLWRARDGKLLATLRGCSG---EISDIAIDNR 529 (1915)
Q Consensus 454 ~~~~i~~~~~~~~~~~~~l~gH~~~V~~vafspdg~-~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~---~I~~Lafspd 529 (1915)
+.+.+|+ .-.....+.+|...|++++|+|++. +|++|+.||.|+|||+.+++++..+.+|.. .|++++|+|+
T Consensus 142 ~~v~~~d----~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 217 (615)
T 1pgu_A 142 GVFISWD----SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPD 217 (615)
T ss_dssp EEEEETT----TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECST
T ss_pred cEEEEEE----CCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCC
Confidence 4666665 2345678899999999999999998 899999999999999999999999999999 9999999999
Q ss_pred -CCEEEEEeCCCcEEEEECCCCceEEEe-e---cCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceec
Q psy9598 530 -NILLAAGTVDKTIRIWNLQTLAPISVL-V---GHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVF 604 (1915)
Q Consensus 530 -g~~LaSgs~DgtIrVWDl~tg~~~~~l-~---~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~ 604 (1915)
+.+|++|+.||.|+|||+.+++.+..+ . +|...|.+++|+ ++ .+|++++.||.|++||+.++..+..+..
T Consensus 218 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~----~~l~~~~~d~~i~~wd~~~~~~~~~~~~ 292 (615)
T 1pgu_A 218 SGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DS----QKFATVGADATIRVWDVTTSKCVQKWTL 292 (615)
T ss_dssp TCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SS----SEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred CCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CC----CEEEEEcCCCcEEEEECCCCcEEEEEcC
Confidence 999999999999999999999999999 6 899999999998 54 8999999999999999998765444433
Q ss_pred cCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEE-------------
Q psy9598 605 HEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQW------------- 671 (1915)
Q Consensus 605 ~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~f------------- 671 (1915)
.. ......+.++.|+ ++.+|++|+.+|.|++||+.. ...+..+.+|...|.+++|
T Consensus 293 ~~--------~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~---~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~ 360 (615)
T 1pgu_A 293 DK--------QQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGH---DEVLKTISGHNKGITALTVNPLISGSYDGRIM 360 (615)
T ss_dssp CT--------TCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTE---EEEEEEECCCSSCEEEEETTTTEEEETTSCEE
T ss_pred CC--------CcccCceeEEEeC-CCCeEEEEECCCCEEEEECCC---CcEEEEEeCCCCCEEEEEecCcEEECCCCeEE
Confidence 21 1223567888886 888999999999999999842 3344455555555554444
Q ss_pred -------------------cCCCCEEEEEeCCCcEEEEEccCCce----------------------------------E
Q psy9598 672 -------------------SHSHLRFVSGSRDGTALIWYYKCSQW----------------------------------R 698 (1915)
Q Consensus 672 -------------------spdg~~L~sgs~DG~I~IWDl~~~~~----------------------------------~ 698 (1915)
.+++..|++++.||.|++|++.++.. .
T Consensus 361 ~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (615)
T 1pgu_A 361 EWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDII 440 (615)
T ss_dssp ETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEE
T ss_pred EEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCcee
Confidence 03366777777788887777653210 0
Q ss_pred Eeee------------------cc-cccCC-----CCccc-cccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCC
Q psy9598 699 FIRL------------------DM-NTCLP-----HTKET-SDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFN 753 (1915)
Q Consensus 699 ~~~~------------------~~-~~~~~-----~~~~~-~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~t 753 (1915)
.... .. ...+. ..... .....|...|++++|+|++.+|++++. ||.|++||+.+
T Consensus 441 ~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-dg~i~iw~~~~ 519 (615)
T 1pgu_A 441 KSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDV-MGKILLYDLQS 519 (615)
T ss_dssp EEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEET-TSCEEEEETTT
T ss_pred eecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCC-CCeEEEeeCCC
Confidence 0000 00 00000 00000 234557889999999999999999998 99999999999
Q ss_pred CceEEEeeC-CCCCeEEEEEccC---------CCCEEEEEecCceEEEEECCCC-ccccceeeeeeecCCCCcceEEEEE
Q psy9598 754 GDLVQVLKG-HTNEVFVLESHPF---------DSRVLLSAGHDGLIIIWDILSS-KQRGYKWFHNIVEGQGEGALFDGKW 822 (1915)
Q Consensus 754 g~~i~~l~g-H~~~V~sl~~sp~---------dg~~LaSgs~DG~I~IWdl~s~-~~~~~~~~~~~~~~~~~~~V~~vaf 822 (1915)
++++..+.+ |...|++++|+|. ++.+|++|+.||.|+|||+.++ .. +..+. .|.+.|.+++|
T Consensus 520 ~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~--~~~~~-----~h~~~v~~l~~ 592 (615)
T 1pgu_A 520 REVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKI--IKALN-----AHKDGVNNLLW 592 (615)
T ss_dssp TEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCC--EEETT-----SSTTCEEEEEE
T ss_pred CcceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCcee--chhhh-----cCccceEEEEE
Confidence 999999998 9999999999994 7899999999999999999987 44 33332 56789999999
Q ss_pred cCCCCEEEEEeCCCeEEEEeCCC
Q psy9598 823 SPDGTTCALTDSYGHLLVYGLGG 845 (1915)
Q Consensus 823 Spdg~~Lasg~~dG~I~Iwdl~s 845 (1915)
+|+|. |++++.||.|+||++..
T Consensus 593 s~~~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 593 ETPST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp EETTE-EEEEETTSCEEEEEEC-
T ss_pred cCCCC-eEEecCCceEEEEeeec
Confidence 99999 99999999999999875
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-35 Score=363.18 Aligned_cols=291 Identities=12% Similarity=0.191 Sum_probs=231.9
Q ss_pred ecCCCCcEEEEEEcCCCCEEEEEEC------CCcEEEEECCCCcEE----EEEeCCCCCEEEEEEeCCCCEEEEEeCCCc
Q psy9598 472 NLGHLSAVFCVLFDKLGEVIVTGAD------DLLIKLWRARDGKLL----ATLRGCSGEISDIAIDNRNILLAAGTVDKT 541 (1915)
Q Consensus 472 l~gH~~~V~~vafspdg~~LaTGs~------Dg~I~IWd~~tg~~~----~~l~gH~~~I~~Lafspdg~~LaSgs~Dgt 541 (1915)
..+|...|+||+|||||++||+|+. |+.|++|+..++... ....+|...|++|+|+|++. |++++.||+
T Consensus 38 p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~ 116 (357)
T 4g56_B 38 PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG-ILVASDSGA 116 (357)
T ss_dssp --CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE-EEEEETTSC
T ss_pred cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC-EEEEECCCE
Confidence 4589999999999999999999997 778999998877543 34457999999999999986 556788999
Q ss_pred EEEEECCCCceEE----EeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCC
Q psy9598 542 IRIWNLQTLAPIS----VLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPG 617 (1915)
Q Consensus 542 IrVWDl~tg~~~~----~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~ 617 (1915)
|+|||+.+++... ...+|.+.|++|+|+|+ +.+|++|+.||+|++||+.++..+.. +..|
T Consensus 117 v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spd----g~~l~sgs~dg~v~iwd~~~~~~~~~------------~~~h 180 (357)
T 4g56_B 117 VELWEILEKESLLVNKFAKYEHDDIVKTLSVFSD----GTQAVSGGKDFSVKVWDLSQKAVLKS------------YNAH 180 (357)
T ss_dssp EEEC--------CCCCEEECCCSSCEEEEEECSS----SSEEEEEETTSCEEEEETTTTEEEEE------------ECCC
T ss_pred EEEeeccccceeEEEeeccCCCCCCEEEEEECCC----CCEEEEEeCCCeEEEEECCCCcEEEE------------EcCC
Confidence 9999998876543 44589999999999994 58999999999999999988754332 2356
Q ss_pred CCceEEEEECCCCc-EEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCC-CEEEEEeCCCcEEEEEccCC
Q psy9598 618 NAHILCSSFSPGGL-FLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSH-LRFVSGSRDGTALIWYYKCS 695 (1915)
Q Consensus 618 ~~~V~~l~fspdg~-~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg-~~L~sgs~DG~I~IWDl~~~ 695 (1915)
...|.+++|++++. +|++++.||.|+|||+.... ......+..|...|.+|+|+|++ .+|++|+.|+.|++||+.++
T Consensus 181 ~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~-~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~ 259 (357)
T 4g56_B 181 SSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPK-PATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNP 259 (357)
T ss_dssp SSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSS-CBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCG
T ss_pred CCCEEEEEEccCCCceeeeeccCCceEEEECCCCc-eeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCC
Confidence 78999999999875 78999999999999995432 23333455678889999999974 68899999999999999877
Q ss_pred ceEEeeecccccCCCCccccccccccccEEEEEECCCCC-EEEEEEecCCeEEEEECCCCceEEEeeCCCCCeEEEEEcc
Q psy9598 696 QWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDR-WVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHP 774 (1915)
Q Consensus 696 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~-~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp 774 (1915)
.... ....+...|++++|+|++. +|++++. |++|+|||+.+++++..+ +|.+.|++|+|+|
T Consensus 260 ~~~~----------------~~~~~~~~v~~l~~sp~~~~~lasgs~-D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP 321 (357)
T 4g56_B 260 DSAQ----------------TSAVHSQNITGLAYSYHSSPFLASISE-DCTVAVLDADFSEVFRDL-SHRDFVTGVAWSP 321 (357)
T ss_dssp GGCE----------------EECCCSSCEEEEEECSSSSCCEEEEET-TSCEEEECTTSCEEEEEC-CCSSCEEEEEECS
T ss_pred cEeE----------------EEeccceeEEEEEEcCCCCCEEEEEeC-CCEEEEEECCCCcEeEEC-CCCCCEEEEEEeC
Confidence 6332 1234677899999999984 6777776 999999999999887765 8999999999999
Q ss_pred CCCCEEEEEecCceEEEEECCCCc
Q psy9598 775 FDSRVLLSAGHDGLIIIWDILSSK 798 (1915)
Q Consensus 775 ~dg~~LaSgs~DG~I~IWdl~s~~ 798 (1915)
.++.+|+|||.||+|+||++.+..
T Consensus 322 ~d~~~l~s~s~Dg~v~iW~~~~~~ 345 (357)
T 4g56_B 322 LDHSKFTTVGWDHKVLHHHLPSEG 345 (357)
T ss_dssp SSTTEEEEEETTSCEEEEECC---
T ss_pred CCCCEEEEEcCCCeEEEEECCCCC
Confidence 789999999999999999997643
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-34 Score=343.53 Aligned_cols=295 Identities=20% Similarity=0.348 Sum_probs=257.1
Q ss_pred CcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCe
Q psy9598 508 GKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGC 587 (1915)
Q Consensus 508 g~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~Dgt 587 (1915)
..+..++.+|...|++++|+|++.+|++|+.||.|+||++.++.....+.+|...|.+++|+|+ +.+|++|+.||.
T Consensus 13 ~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~----~~~l~s~~~d~~ 88 (312)
T 4ery_A 13 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD----SNLLVSASDDKT 88 (312)
T ss_dssp CEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTT----SSEEEEEETTSE
T ss_pred ceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCC----CCEEEEECCCCE
Confidence 4567789999999999999999999999999999999999999999999999999999999994 489999999999
Q ss_pred EEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCee
Q psy9598 588 IGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVD 667 (1915)
Q Consensus 588 I~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~ 667 (1915)
|++||+.++..+.. +..|...|.+++|+|++.+|++|+.||.|++||+. ....+..+..|...|.
T Consensus 89 i~vwd~~~~~~~~~------------~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~---~~~~~~~~~~~~~~v~ 153 (312)
T 4ery_A 89 LKIWDVSSGKCLKT------------LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK---TGKCLKTLPAHSDPVS 153 (312)
T ss_dssp EEEEETTTCCEEEE------------EECCSSCEEEEEECSSSSEEEEEETTSCEEEEETT---TCCEEEEECCCSSCEE
T ss_pred EEEEECCCCcEEEE------------EcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC---CCEEEEEecCCCCcEE
Confidence 99999988754332 23567889999999999999999999999999994 3456778889999999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEE
Q psy9598 668 SIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIK 747 (1915)
Q Consensus 668 sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~ 747 (1915)
+++|++++.+|++|+.||.|++||+.+++..... ...+...+.+++|+|++.+|++++. ||.|+
T Consensus 154 ~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~l~~~~~-d~~i~ 217 (312)
T 4ery_A 154 AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL---------------IDDDNPPVSFVKFSPNGKYILAATL-DNTLK 217 (312)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTCCEEEEE---------------CCSSCCCEEEEEECTTSSEEEEEET-TTEEE
T ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEE---------------eccCCCceEEEEECCCCCEEEEEcC-CCeEE
Confidence 9999999999999999999999999987754322 1124567899999999999999998 99999
Q ss_pred EEECCCCceEEEeeCCCCCeEE--EEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCC
Q psy9598 748 IWDAFNGDLVQVLKGHTNEVFV--LESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPD 825 (1915)
Q Consensus 748 vwD~~tg~~i~~l~gH~~~V~s--l~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpd 825 (1915)
+||+.+++++..+.+|...+.+ ..+++.++.+|++|+.||.|+|||+.++.. +..+. .|...|.+++|+|+
T Consensus 218 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~--~~~~~-----~h~~~v~~~~~~p~ 290 (312)
T 4ery_A 218 LWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI--VQKLQ-----GHTDVVISTACHPT 290 (312)
T ss_dssp EEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCE--EEEEC-----CCSSCEEEEEECSS
T ss_pred EEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchh--hhhhh-----ccCCcEEEEeecCc
Confidence 9999999999999998765432 345544789999999999999999998877 55554 56789999999999
Q ss_pred CCEEEEEe--CCCeEEEEeCC
Q psy9598 826 GTTCALTD--SYGHLLVYGLG 844 (1915)
Q Consensus 826 g~~Lasg~--~dG~I~Iwdl~ 844 (1915)
+.+|++++ .||.|+||...
T Consensus 291 ~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 291 ENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp SSEEEEEECTTTCCEEEEECC
T ss_pred CCceEEEEccCCccEEEecCC
Confidence 99999987 69999999875
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-35 Score=358.37 Aligned_cols=288 Identities=15% Similarity=0.201 Sum_probs=228.1
Q ss_pred cCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCC-----------CcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCc
Q psy9598 473 LGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARD-----------GKLLATLRGCSGEISDIAIDNRNILLAAGTVDKT 541 (1915)
Q Consensus 473 ~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~t-----------g~~~~~l~gH~~~I~~Lafspdg~~LaSgs~Dgt 541 (1915)
.+|...|.+++|+|||++|++|+ |+++++||... .........|...|++|+|++++ .|++|+.||+
T Consensus 27 ~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~ 104 (344)
T 4gqb_B 27 ACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGA 104 (344)
T ss_dssp SSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSE
T ss_pred ccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCE
Confidence 35778899999999999999888 66888887321 01111222356789999999986 6889999999
Q ss_pred EEEEECCCCceEEE----eecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCC
Q psy9598 542 IRIWNLQTLAPISV----LVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPG 617 (1915)
Q Consensus 542 IrVWDl~tg~~~~~----l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~ 617 (1915)
|+|||+.+++.+.. +.+|.+.|++|+|+|+ +.+|++|+.||+|++||+.++..+.. +.+|
T Consensus 105 v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spd----g~~l~sgs~d~~i~iwd~~~~~~~~~------------~~~h 168 (344)
T 4gqb_B 105 VELWELDENETLIVSKFCKYEHDDIVSTVSVLSS----GTQAVSGSKDICIKVWDLAQQVVLSS------------YRAH 168 (344)
T ss_dssp EEEEEECTTSSCEEEEEEEECCSSCEEEEEECTT----SSEEEEEETTSCEEEEETTTTEEEEE------------ECCC
T ss_pred EEEEeccCCCceeEeeccccCCCCCEEEEEECCC----CCEEEEEeCCCeEEEEECCCCcEEEE------------EcCc
Confidence 99999999876543 4589999999999994 58999999999999999988754332 3467
Q ss_pred CCceEEEEECCCCc-EEEEEeCCCeEEEEEecCCCCCceeEE--eccCCCCeeEEEEcCC-CCEEEEEeCCCcEEEEEcc
Q psy9598 618 NAHILCSSFSPGGL-FLATGSGDHHVRVYKMDGVDSPLGILE--VEEHSDKVDSIQWSHS-HLRFVSGSRDGTALIWYYK 693 (1915)
Q Consensus 618 ~~~V~~l~fspdg~-~Lasgs~Dg~I~IwDl~~~~~~~~i~~--l~~h~~~V~sl~fspd-g~~L~sgs~DG~I~IWDl~ 693 (1915)
...|.+++|++++. +|++|+.||+|+|||+... ..+.. ...|...+.+++|+|+ +.+|++|+.||+|+|||++
T Consensus 169 ~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~ 245 (344)
T 4gqb_B 169 AAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCP---KPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTK 245 (344)
T ss_dssp SSCEEEEEECSSCTTEEEEEETTSCEEEEETTSS---SCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESC
T ss_pred CCceEEEEecCCCCCceeeecccccccccccccc---ceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECC
Confidence 88999999999884 7899999999999999533 33333 3456678999999985 5688999999999999999
Q ss_pred CCceEEeeecccccCCCCccccccccccccEEEEEECCCCC-EEEEEEecCCeEEEEECCCCceEEEeeCCCCCeEEEEE
Q psy9598 694 CSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDR-WVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLES 772 (1915)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~-~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~ 772 (1915)
+++.+.. ..+|...|++++|+|++. +|++++. |++|+|||+.+++++ .+.+|.+.|++|+|
T Consensus 246 ~~~~~~~----------------~~~h~~~v~~v~fsp~g~~~lasgs~-D~~i~vwd~~~~~~~-~~~~H~~~V~~v~~ 307 (344)
T 4gqb_B 246 STSCVLS----------------SAVHSQCVTGLVFSPHSVPFLASLSE-DCSLAVLDSSLSELF-RSQAHRDFVRDATW 307 (344)
T ss_dssp C--CCEE----------------EECCSSCEEEEEECSSSSCCEEEEET-TSCEEEECTTCCEEE-EECCCSSCEEEEEE
T ss_pred CCcEEEE----------------EcCCCCCEEEEEEccCCCeEEEEEeC-CCeEEEEECCCCcEE-EEcCCCCCEEEEEE
Confidence 8764332 235778899999999984 6777777 999999999988765 57899999999999
Q ss_pred ccCCCCEEEEEecCceEEEEECCCCcc
Q psy9598 773 HPFDSRVLLSAGHDGLIIIWDILSSKQ 799 (1915)
Q Consensus 773 sp~dg~~LaSgs~DG~I~IWdl~s~~~ 799 (1915)
+|.+..+|+|||.||+|++|++.+...
T Consensus 308 sp~~~~llas~s~D~~v~~w~v~~~~~ 334 (344)
T 4gqb_B 308 SPLNHSLLTTVGWDHQVVHHVVPTEPL 334 (344)
T ss_dssp CSSSTTEEEEEETTSCEEEEECCC---
T ss_pred eCCCCeEEEEEcCCCeEEEEECCCCCC
Confidence 994456888999999999999976543
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-34 Score=347.40 Aligned_cols=296 Identities=18% Similarity=0.242 Sum_probs=250.8
Q ss_pred cEEEEEeCCCCCEEEEEEeCCC-CEEEEEeCCCcEEEEECCC-----CceEEEeecCCCCeEEEEeccCccCCCcEEEEE
Q psy9598 509 KLLATLRGCSGEISDIAIDNRN-ILLAAGTVDKTIRIWNLQT-----LAPISVLVGHQGIITGVNFCPLEVNGFNYLAST 582 (1915)
Q Consensus 509 ~~~~~l~gH~~~I~~Lafspdg-~~LaSgs~DgtIrVWDl~t-----g~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sg 582 (1915)
.+..+|.||.+.|++|+|++++ .+|+||+.|++|++|++.+ +.++..+.+|...|++++|+|+ +.+|++|
T Consensus 8 ~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~d----g~~l~s~ 83 (319)
T 3frx_A 8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTAD----GAYALSA 83 (319)
T ss_dssp EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTT----SSEEEEE
T ss_pred EEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCC----CCEEEEE
Confidence 4567899999999999999965 8999999999999999864 3457789999999999999994 5899999
Q ss_pred eCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccC
Q psy9598 583 STDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEH 662 (1915)
Q Consensus 583 s~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h 662 (1915)
+.||+|++||+.++..+.. +.+|...|.+++|+|++.+|++|+.|++|+|||+. ...+..+.+|
T Consensus 84 s~D~~v~~wd~~~~~~~~~------------~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~----~~~~~~~~~h 147 (319)
T 3frx_A 84 SWDKTLRLWDVATGETYQR------------FVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK----GQCLATLLGH 147 (319)
T ss_dssp ETTSEEEEEETTTTEEEEE------------EECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT----SCEEEEECCC
T ss_pred eCCCEEEEEECCCCCeeEE------------EccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC----CCeEEEEecc
Confidence 9999999999988754322 33577899999999999999999999999999984 3467788899
Q ss_pred CCCeeEEEEcCC------CCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEE
Q psy9598 663 SDKVDSIQWSHS------HLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWV 736 (1915)
Q Consensus 663 ~~~V~sl~fspd------g~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L 736 (1915)
...|.+++|+|. +..|++|+.||.|++||+.+.+.... ..+|...|.+++|+|+|.+|
T Consensus 148 ~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~----------------~~~h~~~v~~~~~sp~g~~l 211 (319)
T 3frx_A 148 NDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEAD----------------FIGHNSNINTLTASPDGTLI 211 (319)
T ss_dssp SSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEE----------------ECCCCSCEEEEEECTTSSEE
T ss_pred CCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhhee----------------ecCCCCcEEEEEEcCCCCEE
Confidence 999999999985 44899999999999999987764321 23577889999999999999
Q ss_pred EEEEecCCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeec---CCC
Q psy9598 737 ITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVE---GQG 813 (1915)
Q Consensus 737 ~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~---~~~ 813 (1915)
++++. ||.|+|||+.+++++..+..| ..|.+++|+| ++.+|++++.+ .|++|++..... +..+..... ..+
T Consensus 212 ~s~~~-dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~sp-~~~~la~~~~~-~i~v~~~~~~~~--~~~~~~~~~~~~~~~ 285 (319)
T 3frx_A 212 ASAGK-DGEIMLWNLAAKKAMYTLSAQ-DEVFSLAFSP-NRYWLAAATAT-GIKVFSLDPQYL--VDDLRPEFAGYSKAA 285 (319)
T ss_dssp EEEET-TCEEEEEETTTTEEEEEEECC-SCEEEEEECS-SSSEEEEEETT-EEEEEEETTEEE--EEEECCCCTTCCGGG
T ss_pred EEEeC-CCeEEEEECCCCcEEEEecCC-CcEEEEEEcC-CCCEEEEEcCC-CcEEEEeCcCee--eeccCccccccccCc
Confidence 99998 999999999999999999865 5799999999 89988888755 599999987655 333321111 123
Q ss_pred CcceEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q psy9598 814 EGALFDGKWSPDGTTCALTDSYGHLLVYGLGGF 846 (1915)
Q Consensus 814 ~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl~s~ 846 (1915)
...+.+++|+|||++|++|+.||.|+||++.++
T Consensus 286 ~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 286 EPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp CCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred CcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence 467899999999999999999999999998764
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-33 Score=346.36 Aligned_cols=308 Identities=20% Similarity=0.291 Sum_probs=238.1
Q ss_pred CCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCC--ceEEEe-ec-CCCCeEEEEeccCccCCCcEEEE
Q psy9598 506 RDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTL--APISVL-VG-HQGIITGVNFCPLEVNGFNYLAS 581 (1915)
Q Consensus 506 ~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg--~~~~~l-~~-h~~~V~sl~fsp~~~~d~~~L~s 581 (1915)
.+.+++.++.+|.+.|.+++|+++ +||+|+.|++|+|||+.++ ..+..+ .+ |.+.|++|+|+|+ +.+|++
T Consensus 2 ~~~~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~----~~~las 75 (330)
T 2hes_X 2 ASINLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPH----TSLLAA 75 (330)
T ss_dssp -CCEEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTT----SSEEEE
T ss_pred cccccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCC----CCEEEE
Confidence 356788899999999999999988 9999999999999999875 445556 44 9999999999994 489999
Q ss_pred EeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCC-CCCceeEEec
Q psy9598 582 TSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGV-DSPLGILEVE 660 (1915)
Q Consensus 582 gs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~-~~~~~i~~l~ 660 (1915)
|+.|++|++||+....... ........+.+|...|.+++|+|+|.+|++|+.|++|+|||+... .....+..+.
T Consensus 76 ~s~D~~v~iw~~~~~~~~~-----~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~ 150 (330)
T 2hes_X 76 GSFDSTVSIWAKEESADRT-----FEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQ 150 (330)
T ss_dssp EETTSCEEEEEC------------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEEC
T ss_pred EeCCCcEEEEEcccCcCcc-----ccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEec
Confidence 9999999999986432100 001112334578899999999999999999999999999999432 3345667789
Q ss_pred cCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCC--CCEEEE
Q psy9598 661 EHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDAS--DRWVIT 738 (1915)
Q Consensus 661 ~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spd--g~~L~t 738 (1915)
+|...|.+|+|+|++.+|++|+.||+|+|||+.++.+... ....+|...|.+++|+|+ +.+|++
T Consensus 151 ~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~--------------~~~~~h~~~v~~~~~~~~~~~~~l~s 216 (330)
T 2hes_X 151 EHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECV--------------AVLNGHEGTVWSSDFDKTEGVFRLCS 216 (330)
T ss_dssp CCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEE--------------EEECCCSSCEEEEEECCSSSSCEEEE
T ss_pred cCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEE--------------EEccCCCCcEEEEEecCCCCeeEEEE
Confidence 9999999999999999999999999999999876642211 123457789999999998 678888
Q ss_pred EEecCCeEEEEECCCC--------ceEEEeeC-CCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeee
Q psy9598 739 AINFNFQIKIWDAFNG--------DLVQVLKG-HTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIV 809 (1915)
Q Consensus 739 ~s~~Dg~I~vwD~~tg--------~~i~~l~g-H~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~ 809 (1915)
++. |++|++||+.++ .++..+.+ |...|++++|++ + .+|++|+.||+|+||++.++.. ..+....
T Consensus 217 ~s~-D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~-~-~~l~s~~~dg~v~iw~~~~~~~---~~~~~~~ 290 (330)
T 2hes_X 217 GSD-DSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGF-N-GLIASVGADGVLAVYEEVDGEW---KVFAKRA 290 (330)
T ss_dssp EET-TSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECT-T-SCEEEEETTSCEEEEEEETTEE---EEEEEES
T ss_pred EeC-CCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcC-C-CEEEEEeCCCEEEEEEcCCCce---EEEeccc
Confidence 888 999999998754 45556665 999999999997 4 4899999999999999976642 1111111
Q ss_pred cCCCCc-ceEEEEEcC--CCCEEEEEeCCCeEEEEeCCC
Q psy9598 810 EGQGEG-ALFDGKWSP--DGTTCALTDSYGHLLVYGLGG 845 (1915)
Q Consensus 810 ~~~~~~-~V~~vafSp--dg~~Lasg~~dG~I~Iwdl~s 845 (1915)
. .|.. .|.+++|+| ++.+||+|+.||.|+||++..
T Consensus 291 ~-~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 291 L-CHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp C-TTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred c-ccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 2 3344 899999999 799999999999999999864
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-33 Score=382.35 Aligned_cols=293 Identities=22% Similarity=0.326 Sum_probs=250.6
Q ss_pred eeeEEecCCCCcEEEEEEcCCC-CEEEEEECCCcEEEEECCC-----CcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCC
Q psy9598 467 RQHYVNLGHLSAVFCVLFDKLG-EVIVTGADDLLIKLWRARD-----GKLLATLRGCSGEISDIAIDNRNILLAAGTVDK 540 (1915)
Q Consensus 467 ~~~~~l~gH~~~V~~vafspdg-~~LaTGs~Dg~I~IWd~~t-----g~~~~~l~gH~~~I~~Lafspdg~~LaSgs~Dg 540 (1915)
.+...|.+|.+.|+||+|++++ .+|+||+.||+|+||++.+ +.....+.+|...|++++|++++++|+||+.||
T Consensus 373 ~~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg 452 (694)
T 3dm0_A 373 VLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDG 452 (694)
T ss_dssp EEEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred chhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCC
Confidence 4455788999999999999864 7999999999999999875 346778999999999999999999999999999
Q ss_pred cEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCc
Q psy9598 541 TIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAH 620 (1915)
Q Consensus 541 tIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (1915)
+|+|||+.++.++..+.+|...|++++|+|+ +.+|++|+.|++|++||+...... . ......+|...
T Consensus 453 ~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~----~~~l~s~s~D~~i~iwd~~~~~~~---~------~~~~~~~h~~~ 519 (694)
T 3dm0_A 453 ELRLWDLAAGVSTRRFVGHTKDVLSVAFSLD----NRQIVSASRDRTIKLWNTLGECKY---T------ISEGGEGHRDW 519 (694)
T ss_dssp EEEEEETTTTEEEEEEECCSSCEEEEEECTT----SSCEEEEETTSCEEEECTTSCEEE---E------ECSSTTSCSSC
T ss_pred cEEEEECCCCcceeEEeCCCCCEEEEEEeCC----CCEEEEEeCCCEEEEEECCCCcce---e------eccCCCCCCCc
Confidence 9999999999999999999999999999994 489999999999999997643211 1 11122357788
Q ss_pred eEEEEECCCC--cEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceE
Q psy9598 621 ILCSSFSPGG--LFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWR 698 (1915)
Q Consensus 621 V~~l~fspdg--~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~ 698 (1915)
|.|++|+|++ ..|++|+.||+|+|||+. .......+.+|.+.|.+|+|+|+|.+|++|+.||+|+|||+.++..+
T Consensus 520 v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~---~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~ 596 (694)
T 3dm0_A 520 VSCVRFSPNTLQPTIVSASWDKTVKVWNLS---NCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKL 596 (694)
T ss_dssp EEEEEECSCSSSCEEEEEETTSCEEEEETT---TCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEE
T ss_pred EEEEEEeCCCCcceEEEEeCCCeEEEEECC---CCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceE
Confidence 9999999987 589999999999999994 34566778999999999999999999999999999999999988744
Q ss_pred EeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCC--------------
Q psy9598 699 FIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHT-------------- 764 (1915)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~-------------- 764 (1915)
... .+...|.+++|+|++.+|++++ ++.|+|||+.++.++..+..|.
T Consensus 597 ~~~-----------------~~~~~v~~~~~sp~~~~l~~~~--~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 657 (694)
T 3dm0_A 597 YSL-----------------EANSVIHALCFSPNRYWLCAAT--EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAA 657 (694)
T ss_dssp ECC-----------------BCSSCEEEEEECSSSSEEEEEE--TTEEEEEETTTTEEEEEECCCCC-------------
T ss_pred EEe-----------------cCCCcEEEEEEcCCCcEEEEEc--CCCEEEEECCCCCChhhhcccccccccccccccccc
Confidence 311 1235689999999998887765 6789999999999888776432
Q ss_pred -----CCeEEEEEccCCCCEEEEEecCceEEEEECC
Q psy9598 765 -----NEVFVLESHPFDSRVLLSAGHDGLIIIWDIL 795 (1915)
Q Consensus 765 -----~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~ 795 (1915)
..|++++|+| ++.+|+||+.||+|+||++.
T Consensus 658 ~~~~~~~~~~l~~sp-dg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 658 TKRKVIYCTSLNWSA-DGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp ---CCCCEEEEEECT-TSSEEEEEETTSEEEEEEC-
T ss_pred CCceeEEeeeEEEcC-CCCEEEEEcCCCeEEEEecc
Confidence 1378999999 99999999999999999985
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-33 Score=359.52 Aligned_cols=335 Identities=21% Similarity=0.349 Sum_probs=275.9
Q ss_pred eEEecCCCCcE-EEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEEC
Q psy9598 469 HYVNLGHLSAV-FCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNL 547 (1915)
Q Consensus 469 ~~~l~gH~~~V-~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl 547 (1915)
...+.||...| +|+.|+ +.+|++|+.||+|+|||+.+++++..+.+|.+.|++++|++++ +|++|+.||+|+|||+
T Consensus 114 ~~~l~~h~~~v~~~~~~~--~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~ 190 (464)
T 3v7d_B 114 RTTLRGHMTSVITCLQFE--DNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDI 190 (464)
T ss_dssp EEEEECCSSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEET
T ss_pred eEEEcCCCCCcEEEEEEC--CCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEEC
Confidence 44788999884 677775 7799999999999999999999999999999999999999988 9999999999999999
Q ss_pred CCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceecc-----------CccccccccCC
Q psy9598 548 QTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFH-----------EPVMFNERIRP 616 (1915)
Q Consensus 548 ~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~-----------~~~~~~~~~~~ 616 (1915)
.++.++..+.+|.+.|.+++|++.. ++.+|++|+.||+|++||+.++......... ........+.+
T Consensus 191 ~~~~~~~~~~~h~~~v~~l~~~~~~--~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (464)
T 3v7d_B 191 KKGCCTHVFEGHNSTVRCLDIVEYK--NIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRG 268 (464)
T ss_dssp TTTEEEEEECCCSSCEEEEEEEESS--SCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECC
T ss_pred CCCcEEEEECCCCCccEEEEEecCC--CCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccC
Confidence 9999999999999999999999743 5689999999999999999887543221111 00112334556
Q ss_pred CCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCc
Q psy9598 617 GNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQ 696 (1915)
Q Consensus 617 ~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~ 696 (1915)
|...|.++ ++++.+|++|+.||.|++||+. ....+..+.+|...|.+++|+|++.+|++|+.||.|++||+.+++
T Consensus 269 ~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~ 343 (464)
T 3v7d_B 269 HMASVRTV--SGHGNIVVSGSYDNTLIVWDVA---QMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGE 343 (464)
T ss_dssp CSSCEEEE--EEETTEEEEEETTSCEEEEETT---TTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTE
T ss_pred ccceEEEE--cCCCCEEEEEeCCCeEEEEECC---CCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Confidence 77778776 5678899999999999999993 456677889999999999999999999999999999999999887
Q ss_pred eEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCCCeEEEEEccCC
Q psy9598 697 WRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFD 776 (1915)
Q Consensus 697 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~d 776 (1915)
.... ...|...|.+++|+ +.+|++++. ||.|++||+.++.....+. |...+..++|++ +
T Consensus 344 ~~~~----------------~~~h~~~v~~~~~~--~~~l~s~s~-dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~-~ 402 (464)
T 3v7d_B 344 LMYT----------------LQGHTALVGLLRLS--DKFLVSAAA-DGSIRGWDANDYSRKFSYH-HTNLSAITTFYV-S 402 (464)
T ss_dssp EEEE----------------ECCCSSCEEEEEEC--SSEEEEEET-TSEEEEEETTTCCEEEEEE-CTTCCCEEEEEE-C
T ss_pred EEEE----------------EeCCCCcEEEEEEc--CCEEEEEeC-CCcEEEEECCCCceeeeec-CCCCccEEEEEe-C
Confidence 5432 23467789999997 588999988 9999999999988776664 666788889999 8
Q ss_pred CCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEEeCCCeEEEEe
Q psy9598 777 SRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYG 842 (1915)
Q Consensus 777 g~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~dG~I~Iwd 842 (1915)
+.+|++|+ ||.|+|||+.+++. +..+. ..+.+.|.+++|+ +..++++++.+|.+.+|-
T Consensus 403 ~~~l~~~~-dg~i~iwd~~~g~~--~~~~~----~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~~ 460 (464)
T 3v7d_B 403 DNILVSGS-ENQFNIYNLRSGKL--VHANI----LKDADQIWSVNFK-GKTLVAAVEKDGQSFLEI 460 (464)
T ss_dssp SSEEEEEE-TTEEEEEETTTCCE--EESCT----TTTCSEEEEEEEE-TTEEEEEEEETTEEEEEE
T ss_pred CCEEEEec-CCeEEEEECCCCcE--Eehhh----ccCCCcEEEEEec-CCEEEEEEEeCCeEEEEE
Confidence 99999988 99999999999887 43321 2456889999997 445566667777666554
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-34 Score=362.98 Aligned_cols=331 Identities=14% Similarity=0.090 Sum_probs=267.8
Q ss_pred CcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEe
Q psy9598 477 SAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVL 556 (1915)
Q Consensus 477 ~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l 556 (1915)
..+++++|+|+|++|++|+.||.|++||+.++.....+.+| ..+....|++++.+|++|+.||.|+|||+.++.....+
T Consensus 57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 135 (420)
T 3vl1_A 57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREID 135 (420)
T ss_dssp BCCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEET
T ss_pred ccccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeec
Confidence 34558999999999999999999999999888776666666 44555678999999999999999999999999999988
Q ss_pred ecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEE
Q psy9598 557 VGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATG 636 (1915)
Q Consensus 557 ~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasg 636 (1915)
.+|.+.|++++|+|+ +.+|++|+.||+|++||+.++..+.. +..|...|.+++|+|++.+|++|
T Consensus 136 ~~h~~~v~~~~~~~~----~~~l~s~s~d~~i~iwd~~~~~~~~~------------~~~h~~~v~~~~~~~~~~~l~s~ 199 (420)
T 3vl1_A 136 QAHVSEITKLKFFPS----GEALISSSQDMQLKIWSVKDGSNPRT------------LIGHRATVTDIAIIDRGRNVLSA 199 (420)
T ss_dssp TSSSSCEEEEEECTT----SSEEEEEETTSEEEEEETTTCCCCEE------------EECCSSCEEEEEEETTTTEEEEE
T ss_pred ccccCccEEEEECCC----CCEEEEEeCCCeEEEEeCCCCcCceE------------EcCCCCcEEEEEEcCCCCEEEEE
Confidence 999999999999994 48999999999999999988754332 23567899999999999999999
Q ss_pred eCCCeEEEEEecCCCCCceeEEecc---CCCC---------------------eeEEEEcCCCCEEEEEeCCCcEEEEEc
Q psy9598 637 SGDHHVRVYKMDGVDSPLGILEVEE---HSDK---------------------VDSIQWSHSHLRFVSGSRDGTALIWYY 692 (1915)
Q Consensus 637 s~Dg~I~IwDl~~~~~~~~i~~l~~---h~~~---------------------V~sl~fspdg~~L~sgs~DG~I~IWDl 692 (1915)
+.||.|++||+.. ...+..+.. |... |.+++|+|++.+|++|+.||.|++||+
T Consensus 200 ~~d~~v~iwd~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~ 276 (420)
T 3vl1_A 200 SLDGTIRLWECGT---GTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNV 276 (420)
T ss_dssp ETTSCEEEEETTT---TEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEET
T ss_pred cCCCcEEEeECCC---CceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEEC
Confidence 9999999999943 344444543 3344 444555789999999999999999999
Q ss_pred cCCceEEeeecccccCCCCccccccccccccEEEEEECCCCC-EEEEEEecCCeEEEEECCCCce-EEEeeC-CCCCeEE
Q psy9598 693 KCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDR-WVITAINFNFQIKIWDAFNGDL-VQVLKG-HTNEVFV 769 (1915)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~-~L~t~s~~Dg~I~vwD~~tg~~-i~~l~g-H~~~V~s 769 (1915)
.++...... ...+...|.+++|+|++. +|++++. ||.|++||+.++.. +..+.+ |...|.+
T Consensus 277 ~~~~~~~~~---------------~~~~~~~v~~~~~~~~~~~~l~~g~~-dg~i~vwd~~~~~~~~~~~~~~~~~~v~~ 340 (420)
T 3vl1_A 277 FSKEQTIQL---------------PSKFTCSCNSLTVDGNNANYIYAGYE-NGMLAQWDLRSPECPVGEFLINEGTPINN 340 (420)
T ss_dssp TTCCEEEEE---------------CCTTSSCEEEEEECSSCTTEEEEEET-TSEEEEEETTCTTSCSEEEEESTTSCEEE
T ss_pred CCCceeEEc---------------ccccCCCceeEEEeCCCCCEEEEEeC-CCeEEEEEcCCCcCchhhhhccCCCCceE
Confidence 987744322 123667899999999999 8888887 99999999998754 777776 6778888
Q ss_pred EEEccCCCCEEEEEecCceEEEEECCCCcccc-ceeee-eeecCCCCcceEEEEEcCCCC---EEEEEeCCCeEEEEeCC
Q psy9598 770 LESHPFDSRVLLSAGHDGLIIIWDILSSKQRG-YKWFH-NIVEGQGEGALFDGKWSPDGT---TCALTDSYGHLLVYGLG 844 (1915)
Q Consensus 770 l~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~-~~~~~-~~~~~~~~~~V~~vafSpdg~---~Lasg~~dG~I~Iwdl~ 844 (1915)
+.+ + ++.+|++|+.||.|+||++....... +..+. ......+.+.|.+++|+|++. .|++++.+|.+.+|++.
T Consensus 341 ~~~-~-~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~ 418 (420)
T 3vl1_A 341 VYF-A-AGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLS 418 (420)
T ss_dssp EEE-E-TTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESC
T ss_pred EEe-C-CCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEecc
Confidence 855 4 57899999999999999998743310 10000 011234668899999999999 78888889999999986
Q ss_pred C
Q psy9598 845 G 845 (1915)
Q Consensus 845 s 845 (1915)
.
T Consensus 419 ~ 419 (420)
T 3vl1_A 419 N 419 (420)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-33 Score=354.11 Aligned_cols=313 Identities=13% Similarity=0.139 Sum_probs=259.5
Q ss_pred eeeeEEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCc------EEEEEeCCCCCEEEEEEeCC----C---CE
Q psy9598 466 LRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGK------LLATLRGCSGEISDIAIDNR----N---IL 532 (1915)
Q Consensus 466 ~~~~~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~------~~~~l~gH~~~I~~Lafspd----g---~~ 532 (1915)
+.....+.+|.+.|+||+|+| .+||+|+.||.|+||++.++. ++..+.+|...|++++|+++ + .+
T Consensus 6 ~~~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~ 83 (397)
T 1sq9_A 6 IATANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCL 83 (397)
T ss_dssp EEEEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEE
T ss_pred hhhhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccE
Confidence 445678899999999999998 799999999999999999988 78889999999999999999 9 99
Q ss_pred EEEEeCCCcEEEEECCCCce-----EEEeecC-----CCCeEEEEec----cCccCCCcE-EEEEeCCCeEEEEeccc--
Q psy9598 533 LAAGTVDKTIRIWNLQTLAP-----ISVLVGH-----QGIITGVNFC----PLEVNGFNY-LASTSTDGCIGFWKYKL-- 595 (1915)
Q Consensus 533 LaSgs~DgtIrVWDl~tg~~-----~~~l~~h-----~~~V~sl~fs----p~~~~d~~~-L~sgs~DgtI~iWDl~~-- 595 (1915)
|++|+.||.|+||++.++.. +..+.+| ...|++++|+ |. +.+ |++|+.||.|++||+.+
T Consensus 84 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~----~~~~l~~~~~dg~i~iwd~~~~~ 159 (397)
T 1sq9_A 84 VATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRL----LSHRLVATDVKGTTYIWKFHPFA 159 (397)
T ss_dssp EEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC--------CEEEEEEETTSCEEEEEEESSS
T ss_pred EEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCC----CceEEEEEeCCCcEEEEeCCccc
Confidence 99999999999999999887 8889989 5999999999 74 478 99999999999999988
Q ss_pred ----Ccccc-----ceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEecc---C-
Q psy9598 596 ----DIDIS-----KTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEE---H- 662 (1915)
Q Consensus 596 ----~~~~~-----~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~---h- 662 (1915)
+..+. .+... ......|...|.+++|+|++ +|++|+.||.|++||+. ....+..+.. |
T Consensus 160 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~---~~~~~~~~~~~~~h~ 230 (397)
T 1sq9_A 160 DESNSLTLNWSPTLELQGT-----VESPMTPSQFATSVDISERG-LIATGFNNGTVQISELS---TLRPLYNFESQHSMI 230 (397)
T ss_dssp SHHHHTTTCCCCEEEEEEE-----ECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETT---TTEEEEEEECCC---
T ss_pred cccccceeeccCcceeeee-----eccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECC---CCceeEEEecccccc
Confidence 54333 11100 00113467889999999999 99999999999999994 3456677777 8
Q ss_pred --CCCeeEEEEcCCCCEEEEEeCC---CcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEE
Q psy9598 663 --SDKVDSIQWSHSHLRFVSGSRD---GTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVI 737 (1915)
Q Consensus 663 --~~~V~sl~fspdg~~L~sgs~D---G~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~ 737 (1915)
...|.+++|+|++.+|++++.| |.|++||+.+++......... ...........|...|.+++|+|++.+|+
T Consensus 231 ~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 307 (397)
T 1sq9_A 231 NNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPT---HSSQASLGEFAHSSWVMSLSFNDSGETLC 307 (397)
T ss_dssp CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC-----------CCBSBSSCEEEEEECSSSSEEE
T ss_pred ccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCc---ccccccccccccCCcEEEEEECCCCCEEE
Confidence 9999999999999999999999 999999999887554321100 00000011122678899999999999999
Q ss_pred EEEecCCeEEEEECCCCceEEEee------CC---------------CCCeEEEEEccCCC----------CEEEEEecC
Q psy9598 738 TAINFNFQIKIWDAFNGDLVQVLK------GH---------------TNEVFVLESHPFDS----------RVLLSAGHD 786 (1915)
Q Consensus 738 t~s~~Dg~I~vwD~~tg~~i~~l~------gH---------------~~~V~sl~~sp~dg----------~~LaSgs~D 786 (1915)
+++. ||.|+|||+.+++++..+. +| ...|++++|+| ++ .+|++|+.|
T Consensus 308 ~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~-~g~~~~~~~~~~~~l~s~~~d 385 (397)
T 1sq9_A 308 SAGW-DGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLK-KGWRSGMGADLNESLCCVCLD 385 (397)
T ss_dssp EEET-TSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEEC-TTTSBSTTCTTSCEEEEEETT
T ss_pred EEeC-CCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEecc-ccccccccccccceEEEecCC
Confidence 9998 9999999999999999999 88 99999999999 76 799999999
Q ss_pred ceEEEEECCCCc
Q psy9598 787 GLIIIWDILSSK 798 (1915)
Q Consensus 787 G~I~IWdl~s~~ 798 (1915)
|.|+||++.+++
T Consensus 386 g~i~iw~~~~g~ 397 (397)
T 1sq9_A 386 RSIRWFREAGGK 397 (397)
T ss_dssp TEEEEEEEEC--
T ss_pred CcEEEEEcCCCC
Confidence 999999998763
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-33 Score=339.03 Aligned_cols=303 Identities=20% Similarity=0.260 Sum_probs=249.1
Q ss_pred CCCCcEEEEEeCCCCCEEEEEEeCC-CCEEEEEeCCCcEEEEECCCCc-----eEEEeecCCCCeEEEEeccCccCCCcE
Q psy9598 505 ARDGKLLATLRGCSGEISDIAIDNR-NILLAAGTVDKTIRIWNLQTLA-----PISVLVGHQGIITGVNFCPLEVNGFNY 578 (1915)
Q Consensus 505 ~~tg~~~~~l~gH~~~I~~Lafspd-g~~LaSgs~DgtIrVWDl~tg~-----~~~~l~~h~~~V~sl~fsp~~~~d~~~ 578 (1915)
..+..+..+|.||.+.|++|+|+|+ +.+|||||.|++|+|||+.++. +...+.+|...|++++|+|+ +.+
T Consensus 25 ~~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~d----g~~ 100 (340)
T 4aow_A 25 TEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSD----GQF 100 (340)
T ss_dssp -CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTT----SSE
T ss_pred CCceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCC----CCE
Confidence 3445677789999999999999997 6899999999999999997643 56788999999999999994 589
Q ss_pred EEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEE
Q psy9598 579 LASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILE 658 (1915)
Q Consensus 579 L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~ 658 (1915)
|++|+.||.|++|+........... .+...+.++.+++++.+|++|+.|+.+++||+.. .......
T Consensus 101 l~s~~~d~~i~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~--~~~~~~~ 166 (340)
T 4aow_A 101 ALSGSWDGTLRLWDLTTGTTTRRFV------------GHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLG--VCKYTVQ 166 (340)
T ss_dssp EEEEETTSEEEEEETTTTEEEEEEE------------CCSSCEEEEEECTTSSCEEEEETTSCEEEECTTS--CEEEEEC
T ss_pred EEEEcccccceEEeecccceeeeec------------CCCCceeEEEEeecCccceeecCCCeEEEEEeCC--CceEEEE
Confidence 9999999999999988764322222 3346788999999999999999999999999842 2233445
Q ss_pred eccCCCCeeEEEEcCCC--CEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEE
Q psy9598 659 VEEHSDKVDSIQWSHSH--LRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWV 736 (1915)
Q Consensus 659 l~~h~~~V~sl~fspdg--~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L 736 (1915)
..+|...|.+++|++++ .++++++.|+.|++||+.++..... ..+|...|++++|+|++.+|
T Consensus 167 ~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~----------------~~~h~~~v~~~~~s~~~~~l 230 (340)
T 4aow_A 167 DESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTN----------------HIGHTGYLNTVTVSPDGSLC 230 (340)
T ss_dssp SSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEE----------------ECCCSSCEEEEEECTTSSEE
T ss_pred eccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeE----------------ecCCCCcEEEEEECCCCCEE
Confidence 67899999999999875 4788999999999999998775432 23467789999999999999
Q ss_pred EEEEecCCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeee----ecCC
Q psy9598 737 ITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNI----VEGQ 812 (1915)
Q Consensus 737 ~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~----~~~~ 812 (1915)
++++. ||.|++||+.++.++..+.++ ..|.+++|+| ++. +++++.||.|+|||+.++.. +..+... ....
T Consensus 231 ~s~s~-Dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~-~~~-~~~~~~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~ 304 (340)
T 4aow_A 231 ASGGK-DGQAMLWDLNEGKHLYTLDGG-DIINALCFSP-NRY-WLCAATGPSIKIWDLEGKII--VDELKQEVISTSSKA 304 (340)
T ss_dssp EEEET-TCEEEEEETTTTEEEEEEECS-SCEEEEEECS-SSS-EEEEEETTEEEEEETTTTEE--EEEECCC-------C
T ss_pred EEEeC-CCeEEEEEeccCceeeeecCC-ceEEeeecCC-CCc-eeeccCCCEEEEEECCCCeE--EEeccccceeeeccC
Confidence 99998 999999999999999998866 4799999999 654 56677899999999988765 4333211 1224
Q ss_pred CCcceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc
Q psy9598 813 GEGALFDGKWSPDGTTCALTDSYGHLLVYGLGGFK 847 (1915)
Q Consensus 813 ~~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl~s~~ 847 (1915)
+...|++++|+|||++||+|+.||.|+||++.+|.
T Consensus 305 h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 305 EPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp CCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred CCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 56789999999999999999999999999999875
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-33 Score=344.05 Aligned_cols=297 Identities=17% Similarity=0.284 Sum_probs=239.5
Q ss_pred cEEEEEeCCCCCEEEEEE-----eC-CCCEEEEEeCCCcEEEEECCC-------CceEEEeecCCCCeEEEEeccCccCC
Q psy9598 509 KLLATLRGCSGEISDIAI-----DN-RNILLAAGTVDKTIRIWNLQT-------LAPISVLVGHQGIITGVNFCPLEVNG 575 (1915)
Q Consensus 509 ~~~~~l~gH~~~I~~Laf-----sp-dg~~LaSgs~DgtIrVWDl~t-------g~~~~~l~~h~~~V~sl~fsp~~~~d 575 (1915)
.+..+|.||.+.|++|+| ++ ++.+||||+.|++|+|||+.+ +.+...+.+|...|++++|+|.
T Consensus 12 ~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~---- 87 (343)
T 2xzm_R 12 VKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQE---- 87 (343)
T ss_dssp EEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSS----
T ss_pred eeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCC----
Confidence 456789999999999999 76 899999999999999999974 3467788999999999999994
Q ss_pred CcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCce
Q psy9598 576 FNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLG 655 (1915)
Q Consensus 576 ~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~ 655 (1915)
+.+|++|+.||+|++||+.++..+.. +.+|...|.+++|+|++.+|++|+.|+.|++||+.. ..
T Consensus 88 ~~~l~s~s~D~~v~lwd~~~~~~~~~------------~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~----~~ 151 (343)
T 2xzm_R 88 NCFAISSSWDKTLRLWDLRTGTTYKR------------FVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILG----EC 151 (343)
T ss_dssp TTEEEEEETTSEEEEEETTSSCEEEE------------EECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSS----CE
T ss_pred CCEEEEEcCCCcEEEEECCCCcEEEE------------EcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccC----Cc
Confidence 48999999999999999988754322 235678999999999999999999999999999842 12
Q ss_pred eEEe---ccCCCCeeEEEEcCCC----------CEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccc
Q psy9598 656 ILEV---EEHSDKVDSIQWSHSH----------LRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKI 722 (1915)
Q Consensus 656 i~~l---~~h~~~V~sl~fspdg----------~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 722 (1915)
.... .+|...|.+++|+|++ .+|++|+.||+|++||.. ..... ....|..
T Consensus 152 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~----------------~~~~h~~ 214 (343)
T 2xzm_R 152 KFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN-FQIRY----------------TFKAHES 214 (343)
T ss_dssp EEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT-TEEEE----------------EEECCSS
T ss_pred eeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC-CceeE----------------EEcCccc
Confidence 2222 3789999999999987 789999999999999943 22111 1234677
Q ss_pred cEEEEEECCCCCEEEEEEecCCeEEEEECCC-CceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCcccc
Q psy9598 723 KVTMVAWDASDRWVITAINFNFQIKIWDAFN-GDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRG 801 (1915)
Q Consensus 723 ~V~~va~spdg~~L~t~s~~Dg~I~vwD~~t-g~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~ 801 (1915)
.|.+++|+|+|.+|++++. ||.|++||+.+ ......+ .+...|.+++|+| ++.+|+ ++.|+.|+||++.++....
T Consensus 215 ~v~~~~~s~~g~~l~sgs~-dg~v~iwd~~~~~~~~~~~-~~~~~v~~v~~sp-~~~~la-~~~d~~v~iw~~~~~~~~~ 290 (343)
T 2xzm_R 215 NVNHLSISPNGKYIATGGK-DKKLLIWDILNLTYPQREF-DAGSTINQIAFNP-KLQWVA-VGTDQGVKIFNLMTQSKAP 290 (343)
T ss_dssp CEEEEEECTTSSEEEEEET-TCEEEEEESSCCSSCSEEE-ECSSCEEEEEECS-SSCEEE-EEESSCEEEEESSSCCSCS
T ss_pred cceEEEECCCCCEEEEEcC-CCeEEEEECCCCcccceee-cCCCcEEEEEECC-CCCEEE-EECCCCEEEEEeCCCCCCc
Confidence 8999999999999999998 99999999944 4444444 3556799999999 787765 5568899999998876522
Q ss_pred ceeeeeee------cCCCCcceEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q psy9598 802 YKWFHNIV------EGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGGF 846 (1915)
Q Consensus 802 ~~~~~~~~------~~~~~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl~s~ 846 (1915)
+..+.... ...+...|.+++|+|+|.+||+|+.||.|+||++.++
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 291 VCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp EEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred eEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence 11222000 0134568999999999999999999999999998765
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-33 Score=350.42 Aligned_cols=292 Identities=18% Similarity=0.262 Sum_probs=242.6
Q ss_pred CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCCC------------------CeEEEEeccCccCCCc
Q psy9598 516 GCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQG------------------IITGVNFCPLEVNGFN 577 (1915)
Q Consensus 516 gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~------------------~V~sl~fsp~~~~d~~ 577 (1915)
+|.+.|+|++|+|+|.+||+|+ +++|+||++.++..+..+.+|.. .|++++|+|+ +.
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d----g~ 136 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPD----GK 136 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTT----SS
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCC----CC
Confidence 6999999999999999999987 78999999999999888876542 3999999994 58
Q ss_pred EEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeE
Q psy9598 578 YLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGIL 657 (1915)
Q Consensus 578 ~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~ 657 (1915)
+|++|+.||+|++||+.++..+. .+.+|...|.+++|+|++.+|++|+.|++|++||+.. .....
T Consensus 137 ~l~s~~~d~~i~iwd~~~~~~~~------------~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~---~~~~~ 201 (393)
T 1erj_A 137 FLATGAEDRLIRIWDIENRKIVM------------ILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRT---GQCSL 201 (393)
T ss_dssp EEEEEETTSCEEEEETTTTEEEE------------EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT---TEEEE
T ss_pred EEEEEcCCCeEEEEECCCCcEEE------------EEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCC---CeeEE
Confidence 99999999999999998764322 2346778999999999999999999999999999943 33333
Q ss_pred EeccCCCCeeEEEEcC-CCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEE
Q psy9598 658 EVEEHSDKVDSIQWSH-SHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWV 736 (1915)
Q Consensus 658 ~l~~h~~~V~sl~fsp-dg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L 736 (1915)
.+ .+...|.+++|+| ++.+|++|+.||.|++||+.++........ ......+|...|.+++|+|+|.+|
T Consensus 202 ~~-~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~---------~~~~~~~h~~~v~~v~~~~~g~~l 271 (393)
T 1erj_A 202 TL-SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDS---------ENESGTGHKDSVYSVVFTRDGQSV 271 (393)
T ss_dssp EE-ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC---------------CCCSSCEEEEEECTTSSEE
T ss_pred EE-EcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecc---------cccCCCCCCCCEEEEEECCCCCEE
Confidence 33 3667899999999 899999999999999999998875432210 011124578899999999999999
Q ss_pred EEEEecCCeEEEEECCC------------CceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCcccccee
Q psy9598 737 ITAINFNFQIKIWDAFN------------GDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKW 804 (1915)
Q Consensus 737 ~t~s~~Dg~I~vwD~~t------------g~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~ 804 (1915)
++++. |+.|++||+.+ +.+...+.+|...|.+++|+| ++.+|++|+.||.|+|||+.++.. +..
T Consensus 272 ~s~s~-d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~sgs~D~~v~iwd~~~~~~--~~~ 347 (393)
T 1erj_A 272 VSGSL-DRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQ-NDEYILSGSKDRGVLFWDKKSGNP--LLM 347 (393)
T ss_dssp EEEET-TSEEEEEEC---------------CEEEEEECCSSCEEEEEECG-GGCEEEEEETTSEEEEEETTTCCE--EEE
T ss_pred EEEeC-CCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECC-CCCEEEEEeCCCeEEEEECCCCeE--EEE
Confidence 99998 99999999875 346678889999999999999 999999999999999999999887 555
Q ss_pred eeeeecCCCCcceEEEEEcC------CCCEEEEEeCCCeEEEEeCCCC
Q psy9598 805 FHNIVEGQGEGALFDGKWSP------DGTTCALTDSYGHLLVYGLGGF 846 (1915)
Q Consensus 805 ~~~~~~~~~~~~V~~vafSp------dg~~Lasg~~dG~I~Iwdl~s~ 846 (1915)
+. .|.+.|.+++|++ ++.+||+|+.||.|+||++...
T Consensus 348 l~-----~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 348 LQ-----GHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp EE-----CCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred EC-----CCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence 54 5678999999986 6899999999999999998643
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-32 Score=343.72 Aligned_cols=309 Identities=14% Similarity=0.146 Sum_probs=246.8
Q ss_pred ceeeeEEecCCCCcEEEEEEcCCC-CEEEEEECCCcEEEEECCCCcEEEEEe--CCCCCEEEEEEeC-CCCEEEEEeCCC
Q psy9598 465 NLRQHYVNLGHLSAVFCVLFDKLG-EVIVTGADDLLIKLWRARDGKLLATLR--GCSGEISDIAIDN-RNILLAAGTVDK 540 (1915)
Q Consensus 465 ~~~~~~~l~gH~~~V~~vafspdg-~~LaTGs~Dg~I~IWd~~tg~~~~~l~--gH~~~I~~Lafsp-dg~~LaSgs~Dg 540 (1915)
.+.+...+.+|.+.|+|++|+|+| .+||+|+.||.|+|||+.++.....+. +|.+.|++++|+| ++.+|++|+.|+
T Consensus 62 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~ 141 (383)
T 3ei3_B 62 SYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRG 141 (383)
T ss_dssp TCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTT
T ss_pred ccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCC
Confidence 456677889999999999999999 999999999999999999988877775 7999999999999 789999999999
Q ss_pred cEEEEECCCCceEEEeecC---CCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCC
Q psy9598 541 TIRIWNLQTLAPISVLVGH---QGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPG 617 (1915)
Q Consensus 541 tIrVWDl~tg~~~~~l~~h---~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~ 617 (1915)
.|+|||+.+ ..+..+..| ...|.+++|+|+ +.+|++|+.||.|++||+. +..+. .+..|
T Consensus 142 ~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~----~~~l~~~~~d~~i~i~d~~-~~~~~------------~~~~h 203 (383)
T 3ei3_B 142 ATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVS----RQMLATGDSTGRLLLLGLD-GHEIF------------KEKLH 203 (383)
T ss_dssp EEEEEETTS-CEEEEEECCCCSSCCEEEEEEETT----TTEEEEEETTSEEEEEETT-SCEEE------------EEECS
T ss_pred EEEEEECCC-CceEEEeccCCCCCCeEEEEECCC----CCEEEEECCCCCEEEEECC-CCEEE------------EeccC
Confidence 999999985 556666544 488999999994 4899999999999999984 32211 22356
Q ss_pred CCceEEEEECCCCc-EEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcC-CCCEEEEEeCCCcEEEEEccCC
Q psy9598 618 NAHILCSSFSPGGL-FLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSH-SHLRFVSGSRDGTALIWYYKCS 695 (1915)
Q Consensus 618 ~~~V~~l~fspdg~-~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fsp-dg~~L~sgs~DG~I~IWDl~~~ 695 (1915)
...|.+++|+|++. +|++|+.||.|++||+.............+|...|.+++|+| ++.+|++++.||.|+|||+.++
T Consensus 204 ~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~ 283 (383)
T 3ei3_B 204 KAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDW 283 (383)
T ss_dssp SSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBT
T ss_pred CCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCC
Confidence 78999999999999 999999999999999965333222333337999999999999 9999999999999999999987
Q ss_pred ceEEeeecccccCCC-CccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeC--CCCCeEEEEE
Q psy9598 696 QWRFIRLDMNTCLPH-TKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKG--HTNEVFVLES 772 (1915)
Q Consensus 696 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~g--H~~~V~sl~~ 772 (1915)
............... .............+..++|+|++.+ +++. ||.|+|||+.+++++..+.+ |...+.+++|
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~-d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~ 360 (383)
T 3ei3_B 284 SKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLND-KRTIDIYDANSGGLVHQLRDPNAAGIISLNKF 360 (383)
T ss_dssp TSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTC-CCCEEEEETTTCCEEEEECBTTBCSCCCEEEE
T ss_pred ccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCC-CCeEEEEecCCCceeeeecCCCCCceEEEEEE
Confidence 643322211110000 0000111112345666778888877 5555 99999999999999999987 5677888899
Q ss_pred ccCCCCEEEEEecCceEEEEECCC
Q psy9598 773 HPFDSRVLLSAGHDGLIIIWDILS 796 (1915)
Q Consensus 773 sp~dg~~LaSgs~DG~I~IWdl~s 796 (1915)
+| ++.+|++|+ ||.|+|||+.+
T Consensus 361 s~-~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 361 SP-TGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp CT-TSSEEEEEE-TTEEEEEECC-
T ss_pred ec-CccEEEEec-CCcEEEEecCC
Confidence 99 999999997 99999999864
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-33 Score=345.77 Aligned_cols=341 Identities=15% Similarity=0.193 Sum_probs=245.1
Q ss_pred eeEEecCCCCcEEEEEEcC-CCCEEEEEECCCcEEEEECCCCcEEEEEe-------------CCCCCEEEEEEeC-CCCE
Q psy9598 468 QHYVNLGHLSAVFCVLFDK-LGEVIVTGADDLLIKLWRARDGKLLATLR-------------GCSGEISDIAIDN-RNIL 532 (1915)
Q Consensus 468 ~~~~l~gH~~~V~~vafsp-dg~~LaTGs~Dg~I~IWd~~tg~~~~~l~-------------gH~~~I~~Lafsp-dg~~ 532 (1915)
....+.+|.+.|+||+|+| ++.+||+|+.||.|+|||+.++.....+. +|...|++++|+| ++.+
T Consensus 35 ~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 114 (408)
T 4a11_B 35 DRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGM 114 (408)
T ss_dssp TEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTC
T ss_pred ceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcE
Confidence 3457789999999999999 99999999999999999999876544432 6999999999999 7889
Q ss_pred EEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCcccccc
Q psy9598 533 LAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNE 612 (1915)
Q Consensus 533 LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~ 612 (1915)
|++|+.||.|++||+.++..+..+. +...+.++.|++.. .++.+|++|+.||.|++||+.++..+..
T Consensus 115 l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~d~~~~~~~~~----------- 181 (408)
T 4a11_B 115 FTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVS-TKHCLVAVGTRGPKVQLCDLKSGSCSHI----------- 181 (408)
T ss_dssp EEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSC-SSCCEEEEEESSSSEEEEESSSSCCCEE-----------
T ss_pred EEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCC-CCCcEEEEEcCCCeEEEEeCCCcceeee-----------
Confidence 9999999999999999999888876 78889999999965 3556999999999999999987754332
Q ss_pred ccCCCCCceEEEEECCCCc-EEEEEeCCCeEEEEEecCCCCCcee-------------EEeccCCCCeeEEEEcCCCCEE
Q psy9598 613 RIRPGNAHILCSSFSPGGL-FLATGSGDHHVRVYKMDGVDSPLGI-------------LEVEEHSDKVDSIQWSHSHLRF 678 (1915)
Q Consensus 613 ~~~~~~~~V~~l~fspdg~-~Lasgs~Dg~I~IwDl~~~~~~~~i-------------~~l~~h~~~V~sl~fspdg~~L 678 (1915)
+..|...|.+++|+|++. +|++|+.||.|++||+......... ....+|...|.+++|+|++.+|
T Consensus 182 -~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 260 (408)
T 4a11_B 182 -LQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHL 260 (408)
T ss_dssp -ECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEE
T ss_pred -ecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEE
Confidence 235678899999999998 5899999999999999643321111 1125789999999999999999
Q ss_pred EEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEE
Q psy9598 679 VSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQ 758 (1915)
Q Consensus 679 ~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~ 758 (1915)
++|+.||.|++||+.++.......... .......+........+..+++++. ++.|++||+.+++++.
T Consensus 261 ~~~~~dg~i~vwd~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~v~d~~~~~~~~ 328 (408)
T 4a11_B 261 LTVGTDNRMRLWNSSNGENTLVNYGKV-----------CNNSKKGLKFTVSCGCSSEFVFVPY-GSTIAVYTVYSGEQIT 328 (408)
T ss_dssp EEEETTSCEEEEETTTCCBCCCCCCCC-----------CCCCSSCCCCEECCSSSSCEEEEEE-TTEEEEEETTTCCEEE
T ss_pred EEecCCCeEEEEECCCCccceeccccc-----------cccccccceeEEecCCCceEEEEec-CCEEEEEECcCCccee
Confidence 999999999999999876432111000 0001111122222334455666666 9999999999999999
Q ss_pred EeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcC-CCCEEEEEeCCCe
Q psy9598 759 VLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSP-DGTTCALTDSYGH 837 (1915)
Q Consensus 759 ~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSp-dg~~Lasg~~dG~ 837 (1915)
.+.+|.+.|++++|+| ++.+|++|+.||.|+||++.+++. +..... ......+.+ ....+++++.+|.
T Consensus 329 ~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~iw~~~~~~~--~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~ 397 (408)
T 4a11_B 329 MLKGHYKTVDCCVFQS-NFQELYSGSRDCNILAWVPSLYEP--VPDDDE--------TTTKSQLNPAFEDAWSSSDEEGG 397 (408)
T ss_dssp EECCCSSCEEEEEEET-TTTEEEEEETTSCEEEEEECC------------------------------------------
T ss_pred eeccCCCeEEEEEEcC-CCCEEEEECCCCeEEEEeCCCCCc--cCCCCc--------eEeccccccccceeecccCccCc
Confidence 9999999999999999 999999999999999999998877 433221 111122333 3445566778899
Q ss_pred EEEEeCCC
Q psy9598 838 LLVYGLGG 845 (1915)
Q Consensus 838 I~Iwdl~s 845 (1915)
+.+|+...
T Consensus 398 ~~~W~~~~ 405 (408)
T 4a11_B 398 TSAWSHPQ 405 (408)
T ss_dssp --------
T ss_pred eeecCCcc
Confidence 99998653
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-33 Score=343.89 Aligned_cols=298 Identities=15% Similarity=0.182 Sum_probs=252.4
Q ss_pred ecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCc--EEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCC
Q psy9598 472 NLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGK--LLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQT 549 (1915)
Q Consensus 472 l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~--~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~t 549 (1915)
+..|.++|+|++|+|+|.+||+|+.||.|+|||+.++. .+..+.+|...|++|+|+|++.+|++|+.||.|+|||+.+
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 83 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKG 83 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEET
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCC
Confidence 44699999999999999999999999999999999987 8899999999999999999999999999999999999998
Q ss_pred CceEEE--eecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEEC
Q psy9598 550 LAPISV--LVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFS 627 (1915)
Q Consensus 550 g~~~~~--l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs 627 (1915)
+..... +..|...|.+++|+|+ +.+|++|+.||.|++||+..+...... .....+|...|.+++|+
T Consensus 84 ~~~~~~~~~~~~~~~v~~~~~~~~----~~~l~~~~~d~~v~i~d~~~~~~~~~~--------~~~~~~~~~~i~~~~~~ 151 (372)
T 1k8k_C 84 RTWKPTLVILRINRAARCVRWAPN----EKKFAVGSGSRVISICYFEQENDWWVC--------KHIKKPIRSTVLSLDWH 151 (372)
T ss_dssp TEEEEEEECCCCSSCEEEEEECTT----SSEEEEEETTSSEEEEEEETTTTEEEE--------EEECTTCCSCEEEEEEC
T ss_pred CeeeeeEEeecCCCceeEEEECCC----CCEEEEEeCCCEEEEEEecCCCcceee--------eeeecccCCCeeEEEEc
Confidence 875544 4679999999999994 489999999999999999876531111 11123567889999999
Q ss_pred CCCcEEEEEeCCCeEEEEEecC---------------CCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEc
Q psy9598 628 PGGLFLATGSGDHHVRVYKMDG---------------VDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYY 692 (1915)
Q Consensus 628 pdg~~Lasgs~Dg~I~IwDl~~---------------~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl 692 (1915)
|++.+|++|+.||.|++||+.. ......+..+.+|...|.+++|+|++.+|++++.||.|++||+
T Consensus 152 ~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~ 231 (372)
T 1k8k_C 152 PNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADA 231 (372)
T ss_dssp TTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEG
T ss_pred CCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEEC
Confidence 9999999999999999999732 1234567778899999999999999999999999999999999
Q ss_pred cCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCC--Cce--------------
Q psy9598 693 KCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFN--GDL-------------- 756 (1915)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~t--g~~-------------- 756 (1915)
.+++..... ..+...|.+++|+|++.+|+++ . |+.|++|++.+ +..
T Consensus 232 ~~~~~~~~~----------------~~~~~~v~~~~~~~~~~~l~~~-~-d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~ 293 (372)
T 1k8k_C 232 DKKMAVATL----------------ASETLPLLAVTFITESSLVAAG-H-DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQ 293 (372)
T ss_dssp GGTTEEEEE----------------ECSSCCEEEEEEEETTEEEEEE-T-TSSCEEEEEETTTTEEEECCCCCCC-----
T ss_pred CCCceeEEE----------------ccCCCCeEEEEEecCCCEEEEE-e-CCeEEEEEccCcCceEEEeeccCccccchh
Confidence 988754322 2356689999999999988777 5 99999999987 421
Q ss_pred ------------------E------EEe-eCCCCCeEEEEEccCCC---CEEEEEecCceEEEEECCCCcc
Q psy9598 757 ------------------V------QVL-KGHTNEVFVLESHPFDS---RVLLSAGHDGLIIIWDILSSKQ 799 (1915)
Q Consensus 757 ------------------i------~~l-~gH~~~V~sl~~sp~dg---~~LaSgs~DG~I~IWdl~s~~~ 799 (1915)
. ..+ .+|...|++++|++.++ .+|+||+.||.|+||++.+++.
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~~ 364 (372)
T 1k8k_C 294 RGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLES 364 (372)
T ss_dssp ---CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHHH
T ss_pred hhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChhH
Confidence 0 233 49999999999886577 9999999999999999977554
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-32 Score=344.53 Aligned_cols=310 Identities=15% Similarity=0.150 Sum_probs=264.5
Q ss_pred ccccccCCCeEEEecc----cCCce----eeeEEecC----------CCCcEEEEEEcCCCCEEEEEECCCcEEEEECCC
Q psy9598 446 REYSGPLSRSLMISSH----KYSNL----RQHYVNLG----------HLSAVFCVLFDKLGEVIVTGADDLLIKLWRARD 507 (1915)
Q Consensus 446 r~~tg~~d~~~~i~~~----~~~~~----~~~~~l~g----------H~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~t 507 (1915)
..++|+.++.+.+|.. ..... .....+.. |.+.|+|++|+|+|.+|++|+.||.|+||+ .+
T Consensus 60 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~ 138 (425)
T 1r5m_A 60 ILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWN-KT 138 (425)
T ss_dssp EEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEEEEETTSCEEEEE-TT
T ss_pred EEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CC
Confidence 3567888999999977 43331 02223333 788999999999999999999999999999 78
Q ss_pred CcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCCCC---------------eEEEEeccCc
Q psy9598 508 GKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGI---------------ITGVNFCPLE 572 (1915)
Q Consensus 508 g~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~---------------V~sl~fsp~~ 572 (1915)
+..+..+.+|...|.+++|+|++.+|++++.|+.|++||+.++..+..+..|... |.+++|++.
T Consensus 139 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 217 (425)
T 1r5m_A 139 GALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDD- 217 (425)
T ss_dssp SCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEET-
T ss_pred CCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCC-
Confidence 8999999999999999999999999999999999999999999999999888877 999999984
Q ss_pred cCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCC
Q psy9598 573 VNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDS 652 (1915)
Q Consensus 573 ~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~ 652 (1915)
..+++++.+|.|++||+.++..+.. +..|...|.+++|+|++.+|++|+.||.|++||+..
T Consensus 218 ----~~~~~~~~~g~i~~~d~~~~~~~~~------------~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~--- 278 (425)
T 1r5m_A 218 ----DKFVIPGPKGAIFVYQITEKTPTGK------------LIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGN--- 278 (425)
T ss_dssp ----TEEEEECGGGCEEEEETTCSSCSEE------------ECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSS---
T ss_pred ----CEEEEEcCCCeEEEEEcCCCceeee------------eccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCC---
Confidence 4699999999999999988754322 224668899999999999999999999999999843
Q ss_pred CceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCC
Q psy9598 653 PLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDAS 732 (1915)
Q Consensus 653 ~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spd 732 (1915)
...+..+.+|...|.+++|+|++ +|++++.||.|++||+.++...... ..+...|.+++|+|+
T Consensus 279 ~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~----------------~~~~~~i~~~~~s~~ 341 (425)
T 1r5m_A 279 GNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALS----------------IVDGVPIFAGRISQD 341 (425)
T ss_dssp BSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEE----------------ECTTCCEEEEEECTT
T ss_pred CccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEec----------------ccCCccEEEEEEcCC
Confidence 34566678899999999999999 9999999999999999887754322 235678999999999
Q ss_pred CCEEEEEEecCCeEEEEECCCCc--------------------eEEEeeCCCC--CeEEEEEccCCCCEEEEEecCceEE
Q psy9598 733 DRWVITAINFNFQIKIWDAFNGD--------------------LVQVLKGHTN--EVFVLESHPFDSRVLLSAGHDGLII 790 (1915)
Q Consensus 733 g~~L~t~s~~Dg~I~vwD~~tg~--------------------~i~~l~gH~~--~V~sl~~sp~dg~~LaSgs~DG~I~ 790 (1915)
+.+|++++. ||.|++||+.++. ++..+.+|.. .|++++|+| ++.+|++|+.||.|+
T Consensus 342 ~~~l~~~~~-dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~ 419 (425)
T 1r5m_A 342 GQKYAVAFM-DGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNC-AGNKISVAYSLQEGS 419 (425)
T ss_dssp SSEEEEEET-TSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECT-TSSEEEEEESSSCCE
T ss_pred CCEEEEEEC-CCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccC-CCceEEEEecCceEE
Confidence 999999998 9999999999888 8999999976 999999999 999999999999999
Q ss_pred EEECC
Q psy9598 791 IWDIL 795 (1915)
Q Consensus 791 IWdl~ 795 (1915)
||++.
T Consensus 420 iw~~~ 424 (425)
T 1r5m_A 420 VVAIP 424 (425)
T ss_dssp EEECC
T ss_pred EEeec
Confidence 99985
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-32 Score=327.44 Aligned_cols=290 Identities=19% Similarity=0.233 Sum_probs=253.2
Q ss_pred CCceeeeEEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcE
Q psy9598 463 YSNLRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTI 542 (1915)
Q Consensus 463 ~~~~~~~~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtI 542 (1915)
+..+++...|.+|.+.|+||+| +++.+|++|+.||.|+|||+.++.....+.+|...|.+++|+|++.+|++|+.||.|
T Consensus 5 ~~~~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 83 (313)
T 3odt_A 5 FTGYQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMI 83 (313)
T ss_dssp CCCCEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCE
T ss_pred cccHHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeE
Confidence 4456778899999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCCC---ceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCC
Q psy9598 543 RIWNLQTL---APISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNA 619 (1915)
Q Consensus 543 rVWDl~tg---~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (1915)
++|++... ..+..+.+|...|.++.|.. .+|++++.||.|++|| .+... ..+..|..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~------~~l~~~~~d~~i~~~d--~~~~~------------~~~~~~~~ 143 (313)
T 3odt_A 84 NGVPLFATSGEDPLYTLIGHQGNVCSLSFQD------GVVISGSWDKTAKVWK--EGSLV------------YNLQAHNA 143 (313)
T ss_dssp EEEETTCCTTSCC-CEECCCSSCEEEEEEET------TEEEEEETTSEEEEEE--TTEEE------------EEEECCSS
T ss_pred EEEEeeecCCCCcccchhhcccCEEEEEecC------CEEEEEeCCCCEEEEc--CCcEE------------EecccCCC
Confidence 99998654 66788899999999999953 7999999999999999 22211 12235678
Q ss_pred ceEEEEECC-CCcEEEEEeCCCeEEEEEecCCCCCceeEEecc-CCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCce
Q psy9598 620 HILCSSFSP-GGLFLATGSGDHHVRVYKMDGVDSPLGILEVEE-HSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQW 697 (1915)
Q Consensus 620 ~V~~l~fsp-dg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~-h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~ 697 (1915)
.+.+++|++ ++.+|++|+.||.|++||. ...+..+.. |...|.+++|++++. |++|+.||.|++||+.+++.
T Consensus 144 ~v~~~~~~~~~~~~l~~~~~d~~i~i~d~-----~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~ 217 (313)
T 3odt_A 144 SVWDAKVVSFSENKFLTASADKTIKLWQN-----DKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDV 217 (313)
T ss_dssp CEEEEEEEETTTTEEEEEETTSCEEEEET-----TEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCE
T ss_pred ceeEEEEccCCCCEEEEEECCCCEEEEec-----CceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhh
Confidence 899999998 8999999999999999994 234555666 999999999999998 99999999999999998775
Q ss_pred EEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCC
Q psy9598 698 RFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDS 777 (1915)
Q Consensus 698 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg 777 (1915)
.... ..|...|.+++|+|++ .|++++. ||.|++||+.+++++..+..|...|++++|+| ++
T Consensus 218 ~~~~----------------~~~~~~i~~~~~~~~~-~l~~~~~-dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~-~~ 278 (313)
T 3odt_A 218 LRTY----------------EGHESFVYCIKLLPNG-DIVSCGE-DRTVRIWSKENGSLKQVITLPAISIWSVDCMS-NG 278 (313)
T ss_dssp EEEE----------------ECCSSCEEEEEECTTS-CEEEEET-TSEEEEECTTTCCEEEEEECSSSCEEEEEECT-TS
T ss_pred hhhh----------------hcCCceEEEEEEecCC-CEEEEec-CCEEEEEECCCCceeEEEeccCceEEEEEEcc-CC
Confidence 4322 2467789999999999 5777777 99999999999999999999999999999999 77
Q ss_pred CEEEEEecCceEEEEECCCCcc
Q psy9598 778 RVLLSAGHDGLIIIWDILSSKQ 799 (1915)
Q Consensus 778 ~~LaSgs~DG~I~IWdl~s~~~ 799 (1915)
. +++|+.||.|+||++.++..
T Consensus 279 ~-~~~~~~dg~i~iw~~~~~~~ 299 (313)
T 3odt_A 279 D-IIVGSSDNLVRIFSQEKSRW 299 (313)
T ss_dssp C-EEEEETTSCEEEEESCGGGC
T ss_pred C-EEEEeCCCcEEEEeCCCCce
Confidence 7 66799999999999998776
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-33 Score=358.76 Aligned_cols=312 Identities=13% Similarity=0.122 Sum_probs=234.8
Q ss_pred eEEecCCCCcEEEEEEcC-CCCEEEEEECCCcEEEEECCCCc--EEEEEeCCCCCEEEEEEeC-CCCEEEEEeCCCcEEE
Q psy9598 469 HYVNLGHLSAVFCVLFDK-LGEVIVTGADDLLIKLWRARDGK--LLATLRGCSGEISDIAIDN-RNILLAAGTVDKTIRI 544 (1915)
Q Consensus 469 ~~~l~gH~~~V~~vafsp-dg~~LaTGs~Dg~I~IWd~~tg~--~~~~l~gH~~~I~~Lafsp-dg~~LaSgs~DgtIrV 544 (1915)
...+.+|...|+||+|+| ++.+||+|+.||+|+|||+.++. .+..+.+|.+.|++|+|+| ++.+|+||+.||+|+|
T Consensus 112 ~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~i 191 (435)
T 4e54_B 112 LQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRL 191 (435)
T ss_dssp CCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEE
T ss_pred cccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEE
Confidence 345668999999999999 56799999999999999998775 4455679999999999998 6889999999999999
Q ss_pred EECCCCceEEEeecC--CCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceE
Q psy9598 545 WNLQTLAPISVLVGH--QGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHIL 622 (1915)
Q Consensus 545 WDl~tg~~~~~l~~h--~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~ 622 (1915)
||+.++........| ...+.+++|+|+ +.+|++|+.||+|++||+.+.. + ..+..|...|.
T Consensus 192 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~g~~dg~i~~wd~~~~~-~------------~~~~~h~~~v~ 254 (435)
T 4e54_B 192 QDFKGNILRVFASSDTINIWFCSLDVSAS----SRMVVTGDNVGNVILLNMDGKE-L------------WNLRMHKKKVT 254 (435)
T ss_dssp EETTSCEEEEEECCSSCSCCCCCEEEETT----TTEEEEECSSSBEEEEESSSCB-C------------CCSBCCSSCEE
T ss_pred eeccCCceeEEeccCCCCccEEEEEECCC----CCEEEEEeCCCcEeeeccCcce-e------------EEEecccceEE
Confidence 999876544444333 346789999984 5899999999999999986432 1 12346778999
Q ss_pred EEEECCCCc-EEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEee
Q psy9598 623 CSSFSPGGL-FLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIR 701 (1915)
Q Consensus 623 ~l~fspdg~-~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~ 701 (1915)
+++|+|++. +|++|+.||.|+|||+........+....+|...|.+|+|+|+|.+|++|+.||+|+|||+.++......
T Consensus 255 ~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~ 334 (435)
T 4e54_B 255 HVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGL 334 (435)
T ss_dssp EEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEE
T ss_pred eeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEE
Confidence 999999876 7889999999999999765544455556789999999999999999999999999999999987755433
Q ss_pred ecccccCCCC-ccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEee-CCCCCeEEE-EEccCCCC
Q psy9598 702 LDMNTCLPHT-KETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLK-GHTNEVFVL-ESHPFDSR 778 (1915)
Q Consensus 702 ~~~~~~~~~~-~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~-gH~~~V~sl-~~sp~dg~ 778 (1915)
.......... ............+..+++++++..+++++..++.|++||+.+++++..+. +|...|.++ +|+| ++.
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fsp-dg~ 413 (435)
T 4e54_B 335 IPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNP-MGD 413 (435)
T ss_dssp CCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECT-TSS
T ss_pred ecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECC-CCC
Confidence 2111100000 00000011122233344444444444444435689999999999998875 788888887 6999 999
Q ss_pred EEEEEecCceEEEEECCCCcc
Q psy9598 779 VLLSAGHDGLIIIWDILSSKQ 799 (1915)
Q Consensus 779 ~LaSgs~DG~I~IWdl~s~~~ 799 (1915)
+|++|+ |++|+||++.+++.
T Consensus 414 ~lasg~-d~~i~iW~~~~gk~ 433 (435)
T 4e54_B 414 TLASAM-GYHILIWSQQEART 433 (435)
T ss_dssp CEEEEC-SSEEEECCCC----
T ss_pred EEEEEc-CCcEEEEECCcCee
Confidence 998876 88999999998765
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-31 Score=330.83 Aligned_cols=298 Identities=14% Similarity=0.173 Sum_probs=258.5
Q ss_pred cEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeE
Q psy9598 509 KLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCI 588 (1915)
Q Consensus 509 ~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI 588 (1915)
.....+.+|.+.|++|+|+|++.+|++|+.||.|+|||+.++..+..+.+|.+.|++++|+|+ +.+|++++.||+|
T Consensus 23 ~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~----~~~l~s~~~dg~i 98 (369)
T 3zwl_B 23 MKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCF----TKYCVTGSADYSI 98 (369)
T ss_dssp EEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTT----SSEEEEEETTTEE
T ss_pred cccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCC----CCEEEEEeCCCeE
Confidence 345678999999999999999999999999999999999999999999999999999999994 4899999999999
Q ss_pred EEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCC-----CeEEEEEecCCCCC--------ce
Q psy9598 589 GFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGD-----HHVRVYKMDGVDSP--------LG 655 (1915)
Q Consensus 589 ~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~D-----g~I~IwDl~~~~~~--------~~ 655 (1915)
++||+.++..+.... +...|.+++|+|++.+|++++.+ |.|.+||+...... ..
T Consensus 99 ~iwd~~~~~~~~~~~-------------~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~ 165 (369)
T 3zwl_B 99 KLWDVSNGQCVATWK-------------SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEP 165 (369)
T ss_dssp EEEETTTCCEEEEEE-------------CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSC
T ss_pred EEEECCCCcEEEEee-------------cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccce
Confidence 999999876544332 34789999999999999999999 99999999654321 13
Q ss_pred eEEeccCCC--CeeEEEEcCCCCEEEEEeCCCcEEEEEccC-CceEEeeecccccCCCCccccccccccccEEEEEECCC
Q psy9598 656 ILEVEEHSD--KVDSIQWSHSHLRFVSGSRDGTALIWYYKC-SQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDAS 732 (1915)
Q Consensus 656 i~~l~~h~~--~V~sl~fspdg~~L~sgs~DG~I~IWDl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spd 732 (1915)
+..+..|.+ .|.+++|+|++.+|++|+.||.|++||+.+ ...... ...+...|.+++|+|+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~----------------~~~~~~~v~~~~~~~~ 229 (369)
T 3zwl_B 166 IHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDS----------------IDLHEKSISDMQFSPD 229 (369)
T ss_dssp SEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEE----------------EECCSSCEEEEEECTT
T ss_pred eeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEE----------------EecCCCceeEEEECCC
Confidence 334556666 999999999999999999999999999987 332221 2236678999999999
Q ss_pred CCEEEEEEecCCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEEecCc--------------eEEEEECCCCc
Q psy9598 733 DRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDG--------------LIIIWDILSSK 798 (1915)
Q Consensus 733 g~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG--------------~I~IWdl~s~~ 798 (1915)
+.+|++++. ||.|++||+.++.++..+. +...+.+++|+| ++.+|++++.++ .|++||+.++.
T Consensus 230 ~~~l~~~~~-d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~ 306 (369)
T 3zwl_B 230 LTYFITSSR-DTNSFLVDVSTLQVLKKYE-TDCPLNTAVITP-LKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEE 306 (369)
T ss_dssp SSEEEEEET-TSEEEEEETTTCCEEEEEE-CSSCEEEEEECS-SSSEEEEEECCC-------------CEEEEEETTTCC
T ss_pred CCEEEEecC-CceEEEEECCCCceeeeec-CCCCceeEEecC-CCceEEEeecCCCceEEEEecCCCcceeEEEecCCCc
Confidence 999999988 9999999999999999988 778899999999 999999999988 89999999988
Q ss_pred cccceeeeeeecCCCCcceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccc
Q psy9598 799 QRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGGFKRP 849 (1915)
Q Consensus 799 ~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl~s~~~~ 849 (1915)
. +..+. .|.+.|.+++|+|+|.+|++++.||.|+||++..+...
T Consensus 307 ~--~~~~~-----~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~ 350 (369)
T 3zwl_B 307 E--IGRVQ-----GHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSYFD 350 (369)
T ss_dssp E--EEEEE-----CCSSCEEEEEECTTSSEEEEEETTSEEEEEEECHHHHT
T ss_pred c--hhhee-----cccCcEEEEEECCCCCEEEEEcCCCeEEEEECccccch
Confidence 7 55554 46789999999999999999999999999999876543
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-32 Score=328.42 Aligned_cols=284 Identities=14% Similarity=0.210 Sum_probs=245.5
Q ss_pred EEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcE---EEEEe--CCCCCEEEEEEeCCCCEEEEEeCCCcEEE
Q psy9598 470 YVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKL---LATLR--GCSGEISDIAIDNRNILLAAGTVDKTIRI 544 (1915)
Q Consensus 470 ~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~---~~~l~--gH~~~I~~Lafspdg~~LaSgs~DgtIrV 544 (1915)
..+.+|...|++++|+|++++|++|+ ||.|+||++.++.. +..+. +|...|.+++|+|++.+|++|+.|+.|++
T Consensus 45 ~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 123 (337)
T 1gxr_A 45 INTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSI 123 (337)
T ss_dssp EEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEE
T ss_pred ceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEE
Confidence 34458999999999999999999999 99999999987752 33333 89999999999999999999999999999
Q ss_pred EECCCCc--eEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceE
Q psy9598 545 WNLQTLA--PISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHIL 622 (1915)
Q Consensus 545 WDl~tg~--~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~ 622 (1915)
||+.++. ....+.+|...|.+++|+|. +.+|++++.||.|++||+.++..+.. +..|...|.
T Consensus 124 ~d~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~l~~~~~dg~v~~~d~~~~~~~~~------------~~~~~~~i~ 187 (337)
T 1gxr_A 124 WDLAAPTPRIKAELTSSAPACYALAISPD----SKVCFSCCSDGNIAVWDLHNQTLVRQ------------FQGHTDGAS 187 (337)
T ss_dssp EECCCC--EEEEEEECSSSCEEEEEECTT----SSEEEEEETTSCEEEEETTTTEEEEE------------ECCCSSCEE
T ss_pred EECCCCCcceeeecccCCCceEEEEECCC----CCEEEEEeCCCcEEEEeCCCCceeee------------eecccCceE
Confidence 9999887 66778899999999999994 48999999999999999987653322 234668899
Q ss_pred EEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeee
Q psy9598 623 CSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRL 702 (1915)
Q Consensus 623 ~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~ 702 (1915)
+++|+|++.+|++++.||.|++||+.. ...+.. ..|...|.+++|+|++.+|++++.||.|++||+.+.....
T Consensus 188 ~~~~~~~~~~l~~~~~dg~i~~~d~~~---~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~--- 260 (337)
T 1gxr_A 188 CIDISNDGTKLWTGGLDNTVRSWDLRE---GRQLQQ-HDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ--- 260 (337)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEETTT---TEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEE---
T ss_pred EEEECCCCCEEEEEecCCcEEEEECCC---CceEee-ecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEE---
Confidence 999999999999999999999999943 233333 3578899999999999999999999999999998776322
Q ss_pred cccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEE
Q psy9598 703 DMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLS 782 (1915)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaS 782 (1915)
...+...|.+++|+|++.+|++++. ||.|++||+.+++.+..+ .|...|++++|+| ++.+|++
T Consensus 261 --------------~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~~~~~~~~~~~~~-~~~~~v~~~~~s~-~~~~l~~ 323 (337)
T 1gxr_A 261 --------------LHLHESCVLSLKFAYCGKWFVSTGK-DNLLNAWRTPYGASIFQS-KESSSVLSCDISV-DDKYIVT 323 (337)
T ss_dssp --------------ECCCSSCEEEEEECTTSSEEEEEET-TSEEEEEETTTCCEEEEE-ECSSCEEEEEECT-TSCEEEE
T ss_pred --------------EcCCccceeEEEECCCCCEEEEecC-CCcEEEEECCCCeEEEEe-cCCCcEEEEEECC-CCCEEEE
Confidence 2246678999999999999999998 999999999999888554 5888999999999 9999999
Q ss_pred EecCceEEEEEC
Q psy9598 783 AGHDGLIIIWDI 794 (1915)
Q Consensus 783 gs~DG~I~IWdl 794 (1915)
++.||.|++|++
T Consensus 324 ~~~dg~i~iw~~ 335 (337)
T 1gxr_A 324 GSGDKKATVYEV 335 (337)
T ss_dssp EETTSCEEEEEE
T ss_pred ecCCCeEEEEEE
Confidence 999999999997
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-32 Score=337.80 Aligned_cols=300 Identities=17% Similarity=0.243 Sum_probs=247.0
Q ss_pred EEECCCCcEEEEEeCCCCCEEEEEEeCCC-CEEEEEeCCCcEEEEECCCCceEEEee--cCCCCeEEEEeccCccCCCcE
Q psy9598 502 LWRARDGKLLATLRGCSGEISDIAIDNRN-ILLAAGTVDKTIRIWNLQTLAPISVLV--GHQGIITGVNFCPLEVNGFNY 578 (1915)
Q Consensus 502 IWd~~tg~~~~~l~gH~~~I~~Lafspdg-~~LaSgs~DgtIrVWDl~tg~~~~~l~--~h~~~V~sl~fsp~~~~d~~~ 578 (1915)
+|++.+..+...+.+|...|++|+|+|++ .+||+|+.||.|+|||+.++.....+. +|.+.|++++|+|. ++.+
T Consensus 57 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~~ 133 (383)
T 3ei3_B 57 IRSLKSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQF---NTNQ 133 (383)
T ss_dssp HHHHTTCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETT---EEEE
T ss_pred cccccccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCC---CCCE
Confidence 44556677888899999999999999999 999999999999999999988887775 69999999999993 3489
Q ss_pred EEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEE
Q psy9598 579 LASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILE 658 (1915)
Q Consensus 579 L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~ 658 (1915)
|++++.||+|++||+.+.. +..+. ....+...|.+++|+|++.+|++|+.||.|++||+. ...+..
T Consensus 134 l~s~~~d~~i~iwd~~~~~-~~~~~---------~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~----~~~~~~ 199 (383)
T 3ei3_B 134 LFVSSIRGATTLRDFSGSV-IQVFA---------KTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD----GHEIFK 199 (383)
T ss_dssp EEEEETTTEEEEEETTSCE-EEEEE---------CCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT----SCEEEE
T ss_pred EEEEeCCCEEEEEECCCCc-eEEEe---------ccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC----CCEEEE
Confidence 9999999999999998532 11111 112345789999999999999999999999999983 346778
Q ss_pred eccCCCCeeEEEEcCCCC-EEEEEeCCCcEEEEEccCCc----eEEeeecccccCCCCccccccccccccEEEEEECC-C
Q psy9598 659 VEEHSDKVDSIQWSHSHL-RFVSGSRDGTALIWYYKCSQ----WRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDA-S 732 (1915)
Q Consensus 659 l~~h~~~V~sl~fspdg~-~L~sgs~DG~I~IWDl~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~sp-d 732 (1915)
+.+|...|.+++|+|++. +|++|+.||.|++||+.+.. +.. ...+...|.+++|+| +
T Consensus 200 ~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-----------------~~~~~~~v~~~~~s~~~ 262 (383)
T 3ei3_B 200 EKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIA-----------------EMPHEKPVNAAYFNPTD 262 (383)
T ss_dssp EECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEE-----------------EEECSSCEEEEEECTTT
T ss_pred eccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEE-----------------EecCCCceEEEEEcCCC
Confidence 889999999999999999 99999999999999998733 211 113678899999999 9
Q ss_pred CCEEEEEEecCCeEEEEECCCCceEEEeeCCC-----------------CCeEEEEEccCCCCEEEEEecCceEEEEECC
Q psy9598 733 DRWVITAINFNFQIKIWDAFNGDLVQVLKGHT-----------------NEVFVLESHPFDSRVLLSAGHDGLIIIWDIL 795 (1915)
Q Consensus 733 g~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~-----------------~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~ 795 (1915)
+.+|++++. |+.|++||+.++..+..+.+|. +.+..++|+| ++.+ +|+.||.|+|||+.
T Consensus 263 ~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~-dg~~--s~s~d~~i~iwd~~ 338 (383)
T 3ei3_B 263 STKLLTTDQ-RNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYP-DDQL--LLNDKRTIDIYDAN 338 (383)
T ss_dssp SCEEEEEES-SSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBC-CTTT--CTTCCCCEEEEETT
T ss_pred CCEEEEEcC-CCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecC-Cccc--ccCCCCeEEEEecC
Confidence 999999998 9999999999998877777653 2344466666 5555 77899999999999
Q ss_pred CCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q psy9598 796 SSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGG 845 (1915)
Q Consensus 796 s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl~s 845 (1915)
+++. +..+. ...+.+.+..++|+|+|.+||+|+ ||.|+||++.+
T Consensus 339 ~~~~--~~~l~---~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 339 SGGL--VHQLR---DPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp TCCE--EEEEC---BTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred CCce--eeeec---CCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 9887 55543 112346677789999999999997 89999999875
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-31 Score=339.62 Aligned_cols=285 Identities=21% Similarity=0.324 Sum_probs=244.3
Q ss_pred cEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEe--CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEE
Q psy9598 478 AVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLR--GCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISV 555 (1915)
Q Consensus 478 ~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~--gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~ 555 (1915)
-+++|+||++ ++||+|. |++|+|||+.+|+++..+. +|...|++|+|+|+|.+||+|+.||+|+|||+.+++++..
T Consensus 107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~ 184 (420)
T 4gga_A 107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRN 184 (420)
T ss_dssp TCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred cceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEE
Confidence 3567999975 5788776 8999999999999887665 6778899999999999999999999999999999999999
Q ss_pred eecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEE
Q psy9598 556 LVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLAT 635 (1915)
Q Consensus 556 l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Las 635 (1915)
+.+|...|.++.|++ .+|++|+.|+.+++||....... ...+..|...+.++.|+++|.+|++
T Consensus 185 ~~~h~~~v~~~s~~~------~~l~sgs~d~~i~~~d~~~~~~~-----------~~~~~~h~~~~~~~~~~~~g~~l~s 247 (420)
T 4gga_A 185 MTSHSARVGSLSWNS------YILSSGSRSGHIHHHDVRVAEHH-----------VATLSGHSQEVCGLRWAPDGRHLAS 247 (420)
T ss_dssp ECCCSSCEEEEEEET------TEEEEEETTSEEEEEETTSSSCE-----------EEEEECCSSCEEEEEECTTSSEEEE
T ss_pred EeCCCCceEEEeeCC------CEEEEEeCCCceeEeeeccccee-----------eEEecccccceeeeeecCCCCeeee
Confidence 999999999999875 79999999999999998765321 1223467788999999999999999
Q ss_pred EeCCCeEEEEEecCCC-CCceeEEeccCCCCeeEEEEcCCCC-EEEE--EeCCCcEEEEEccCCceEEeeecccccCCCC
Q psy9598 636 GSGDHHVRVYKMDGVD-SPLGILEVEEHSDKVDSIQWSHSHL-RFVS--GSRDGTALIWYYKCSQWRFIRLDMNTCLPHT 711 (1915)
Q Consensus 636 gs~Dg~I~IwDl~~~~-~~~~i~~l~~h~~~V~sl~fspdg~-~L~s--gs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~ 711 (1915)
++.||.|+||++.... ....+.....|...|.+++|+|.+. .|++ |+.||+|+|||+.++.+....
T Consensus 248 ~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~---------- 317 (420)
T 4gga_A 248 GGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV---------- 317 (420)
T ss_dssp EETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEE----------
T ss_pred eeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceee----------
Confidence 9999999999986433 2334566788999999999999765 4444 457999999999988755432
Q ss_pred ccccccccccccEEEEEECCCCCEEEEEEe-cCCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEE
Q psy9598 712 KETSDETNKKIKVTMVAWDASDRWVITAIN-FNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLII 790 (1915)
Q Consensus 712 ~~~~~~~~~~~~V~~va~spdg~~L~t~s~-~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~ 790 (1915)
.....+.++.|++++..++++++ .|+.|+|||+.+++++..+.+|.+.|++|+|+| ++.+|||||.||+|+
T Consensus 318 -------~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~sp-dg~~l~S~s~D~tvr 389 (420)
T 4gga_A 318 -------DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSP-DGATVASAAADETLR 389 (420)
T ss_dssp -------ECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSCEEEEETTTEEE
T ss_pred -------ccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcC-CCCEEEEEecCCeEE
Confidence 13456889999999999988763 489999999999999999999999999999999 999999999999999
Q ss_pred EEECCCCcc
Q psy9598 791 IWDILSSKQ 799 (1915)
Q Consensus 791 IWdl~s~~~ 799 (1915)
|||+....+
T Consensus 390 iWdv~~~~~ 398 (420)
T 4gga_A 390 LWRCFELDP 398 (420)
T ss_dssp EECCSCSSC
T ss_pred EEECCCCCc
Confidence 999987655
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-32 Score=332.94 Aligned_cols=305 Identities=16% Similarity=0.194 Sum_probs=243.8
Q ss_pred eEEecCCCCcEEEEEEcCCCCEE-EEEEC---CCcEEEEECCCCcEEEEE-eCCCCCEEEEEEeCC---CCEEEEEeCCC
Q psy9598 469 HYVNLGHLSAVFCVLFDKLGEVI-VTGAD---DLLIKLWRARDGKLLATL-RGCSGEISDIAIDNR---NILLAAGTVDK 540 (1915)
Q Consensus 469 ~~~l~gH~~~V~~vafspdg~~L-aTGs~---Dg~I~IWd~~tg~~~~~l-~gH~~~I~~Lafspd---g~~LaSgs~Dg 540 (1915)
...+.+|.+.|++|+|+|++..| ++|+. ||.|+||++.++...... .+|...|++++|+|+ +.+|++|+.||
T Consensus 11 ~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg 90 (357)
T 3i2n_A 11 AHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGG 90 (357)
T ss_dssp EEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTS
T ss_pred hhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCC
Confidence 34567899999999999999655 56665 899999999999876543 379999999999998 69999999999
Q ss_pred cEEEEECCCCc-eEEEeecCCCCeEEEEeccC--ccCCCcEEEEEeCCCeEEEEecccCc-cccceeccCccccccccCC
Q psy9598 541 TIRIWNLQTLA-PISVLVGHQGIITGVNFCPL--EVNGFNYLASTSTDGCIGFWKYKLDI-DISKTVFHEPVMFNERIRP 616 (1915)
Q Consensus 541 tIrVWDl~tg~-~~~~l~~h~~~V~sl~fsp~--~~~d~~~L~sgs~DgtI~iWDl~~~~-~~~~~~~~~~~~~~~~~~~ 616 (1915)
.|++||+.++. ++..+.+|...|.++.|.+. -..++.+|++|+.||.|++||+.++. .+..+..+ ...
T Consensus 91 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~--------~~~ 162 (357)
T 3i2n_A 91 NLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPV--------QGE 162 (357)
T ss_dssp CEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCC--------TTS
T ss_pred eEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceecccc--------CCC
Confidence 99999999988 89999999999999976541 11256899999999999999998875 22222111 011
Q ss_pred CCCceEEEE----ECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcC---CCCEEEEEeCCCcEEE
Q psy9598 617 GNAHILCSS----FSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSH---SHLRFVSGSRDGTALI 689 (1915)
Q Consensus 617 ~~~~V~~l~----fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fsp---dg~~L~sgs~DG~I~I 689 (1915)
+...+.+++ |++++.+|++|+.||.|++||+... . ......|...|.+++|+| ++.+|++|+.||.|++
T Consensus 163 ~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~---~-~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i 238 (357)
T 3i2n_A 163 NKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNM---A-LRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHV 238 (357)
T ss_dssp CCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTT---E-EEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEE
T ss_pred CCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccC---c-eeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEE
Confidence 134788888 7899999999999999999999432 2 234567899999999999 8999999999999999
Q ss_pred EEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCC-EEEEEEecCCeEEEEECCCC--------------
Q psy9598 690 WYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDR-WVITAINFNFQIKIWDAFNG-------------- 754 (1915)
Q Consensus 690 WDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~-~L~t~s~~Dg~I~vwD~~tg-------------- 754 (1915)
||+.++...... .......|...|++++|+|++. +|++++. ||.|++||+.++
T Consensus 239 ~d~~~~~~~~~~-----------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~g~~~~ 306 (357)
T 3i2n_A 239 FDMRTQHPTKGF-----------ASVSEKAHKSTVWQVRHLPQNRELFLTAGG-AGGLHLWKYEYPIQRSKKDSEGIEMG 306 (357)
T ss_dssp EEEEEEETTTEE-----------EEEEEECCSSCEEEEEEETTEEEEEEEEET-TSEEEEEEEECCSCC--CCTTSCCCC
T ss_pred EeCcCCCcccce-----------eeeccCCCcCCEEEEEECCCCCcEEEEEeC-CCcEEEeecCCCcccccccCCCCccc
Confidence 999865421100 0001225778999999999999 6777777 999999998754
Q ss_pred -----ceEEEeeCCCCCeEEEEEccCCCCEEE-EEecCceEEEEECCCCc
Q psy9598 755 -----DLVQVLKGHTNEVFVLESHPFDSRVLL-SAGHDGLIIIWDILSSK 798 (1915)
Q Consensus 755 -----~~i~~l~gH~~~V~sl~~sp~dg~~La-Sgs~DG~I~IWdl~s~~ 798 (1915)
.++..+.+|...|++++|+| ++.+|+ +|+.||.|+|||+.+..
T Consensus 307 ~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~s~~~d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 307 VAGSVSLLQNVTLSTQPISSLDWSP-DKRGLCVCSSFDQTVRVLIVTKLN 355 (357)
T ss_dssp CCCEEEEEEEEECCSSCEEEEEECS-SSTTEEEEEETTSEEEEEEECC--
T ss_pred cccccceeeccccCCCCeeEEEEcC-CCCeEEEEecCCCcEEEEECCCcc
Confidence 46788899999999999999 777777 89999999999997654
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-32 Score=338.67 Aligned_cols=308 Identities=17% Similarity=0.229 Sum_probs=247.5
Q ss_pred EEecCCCCcEEEEEEcCC----CCEEEEEECCCcEEEEECCCCcEEEEEeC-----CCCCEEEEEEeCC----CCEEEEE
Q psy9598 470 YVNLGHLSAVFCVLFDKL----GEVIVTGADDLLIKLWRARDGKLLATLRG-----CSGEISDIAIDNR----NILLAAG 536 (1915)
Q Consensus 470 ~~l~gH~~~V~~vafspd----g~~LaTGs~Dg~I~IWd~~tg~~~~~l~g-----H~~~I~~Lafspd----g~~LaSg 536 (1915)
..+.||.+.|+||+|+|+ ..++++++.++.|+||++.++..+..+.. |...|++++|+++ +.+|++|
T Consensus 12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~ 91 (366)
T 3k26_A 12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVA 91 (366)
T ss_dssp EEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEE
T ss_pred EeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEe
Confidence 345699999999999984 55677777777999999998887776654 5678999999999 6799999
Q ss_pred eCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCC
Q psy9598 537 TVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRP 616 (1915)
Q Consensus 537 s~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~ 616 (1915)
+.||.|+|||+.++..+..+.+|...|++++|+|. ++.+|++|+.||+|++||+.++..+..+. .+..
T Consensus 92 ~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---------~~~~ 159 (366)
T 3k26_A 92 GSRGIIRIINPITMQCIKHYVGHGNAINELKFHPR---DPNLLLSVSKDHALRLWNIQTDTLVAIFG---------GVEG 159 (366)
T ss_dssp ETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSS---CTTEEEEEETTSCEEEEETTTTEEEEEEC---------STTS
T ss_pred cCCCEEEEEEchhceEeeeecCCCCcEEEEEECCC---CCCEEEEEeCCCeEEEEEeecCeEEEEec---------cccc
Confidence 99999999999999999999999999999999982 34899999999999999998775432221 1235
Q ss_pred CCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCC-------------------------ceeEEeccCCCCeeEEEE
Q psy9598 617 GNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSP-------------------------LGILEVEEHSDKVDSIQW 671 (1915)
Q Consensus 617 ~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~-------------------------~~i~~l~~h~~~V~sl~f 671 (1915)
|...|.+++|+|++.+|++|+.||.|++||+...... .......+|...|.+++|
T Consensus 160 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 239 (366)
T 3k26_A 160 HRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRW 239 (366)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEE
T ss_pred ccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEE
Confidence 6789999999999999999999999999998532100 012233459999999999
Q ss_pred cCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCC--CCEEEEEEecCCeEEEE
Q psy9598 672 SHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDAS--DRWVITAINFNFQIKIW 749 (1915)
Q Consensus 672 spdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spd--g~~L~t~s~~Dg~I~vw 749 (1915)
+ +.+|++++.||.|++||+.+......... ..............+...|++++|+|+ +.+|++++. ||.|++|
T Consensus 240 ~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~-dg~i~vw 314 (366)
T 3k26_A 240 L--GDLILSKSCENAIVCWKPGKMEDDIDKIK--PSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQ-VGKLYVW 314 (366)
T ss_dssp E--TTEEEEECSSSEEEEEEESSTTCCGGGCC--TTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECT-TSCEEEE
T ss_pred c--CCEEEEEecCCEEEEEeCCCccccccccc--cCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEec-CCcEEEE
Confidence 8 77999999999999999987653111000 000000112233456677889999999 999999988 9999999
Q ss_pred ECCCCc----eEEEeeCC--CCCeEEEEEccCCCCEEEEEecCceEEEEECC
Q psy9598 750 DAFNGD----LVQVLKGH--TNEVFVLESHPFDSRVLLSAGHDGLIIIWDIL 795 (1915)
Q Consensus 750 D~~tg~----~i~~l~gH--~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~ 795 (1915)
|+.+++ .+..+.+| ...|++++|+| ++.+|++|+.||.|+|||+.
T Consensus 315 d~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 315 DLEVEDPHKAKCTTLTHHKCGAAIRQTSFSR-DSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp ECCSSSGGGCEEEEECCTTCCSCEEEEEECT-TSSEEEEEETTSEEEEEEC-
T ss_pred ECCCCCCccccceEEcccccCCceEEEEeCC-CCCeEEEEeCCCEEEEEEec
Confidence 999876 44578888 78999999999 99999999999999999985
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-33 Score=363.76 Aligned_cols=310 Identities=11% Similarity=0.062 Sum_probs=228.6
Q ss_pred CEEEEEECCCcEEEEECCCCcE----EEEEeCCCCCEEEEEEeCC------CCEEEEEeCCCcEEEEECCCCce------
Q psy9598 489 EVIVTGADDLLIKLWRARDGKL----LATLRGCSGEISDIAIDNR------NILLAAGTVDKTIRIWNLQTLAP------ 552 (1915)
Q Consensus 489 ~~LaTGs~Dg~I~IWd~~tg~~----~~~l~gH~~~I~~Lafspd------g~~LaSgs~DgtIrVWDl~tg~~------ 552 (1915)
.+|++|+.|++|+||++.++++ ..++.+|.+.|.+|+|+|+ +.+||+|+.||+|+|||+.++..
T Consensus 174 ~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~ 253 (524)
T 2j04_B 174 EMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFK 253 (524)
T ss_dssp --------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEE
T ss_pred hhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccce
Confidence 3444466889999999988764 3457788999999999996 57999999999999999987642
Q ss_pred -----EEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEE--E
Q psy9598 553 -----ISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCS--S 625 (1915)
Q Consensus 553 -----~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l--~ 625 (1915)
...+.+|...|++++|++. ..|++|+.||+|++||+.++.... ..+..|...|.++ +
T Consensus 254 ~~~~p~~~l~~h~~~v~sv~~s~~-----~~lasgs~DgtV~lWD~~~~~~~~-----------~~~~~H~~~V~sv~~~ 317 (524)
T 2j04_B 254 MCEKPSLTLSLADSLITTFDFLSP-----TTVVCGFKNGFVAEFDLTDPEVPS-----------FYDQVHDSYILSVSTA 317 (524)
T ss_dssp CCCSCSEEECCTTTCEEEEEESSS-----SEEEEEETTSEEEEEETTBCSSCS-----------EEEECSSSCEEEEEEE
T ss_pred eecCceEEEEcCCCCEEEEEecCC-----CeEEEEeCCCEEEEEECCCCCCce-----------EEeecccccEEEEEEE
Confidence 3478899999999999972 489999999999999998753211 1133577899999 5
Q ss_pred ECCCC-cEEEEEeCCCeEEEEEecCCCCCceeEEeccCCC--CeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeee
Q psy9598 626 FSPGG-LFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSD--KVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRL 702 (1915)
Q Consensus 626 fspdg-~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~--~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~ 702 (1915)
|+++| .+||+|+.||+|+|||++. ...+..+.+|.. .|.+|+|+|++..|++++.|++|+|||++++.+...
T Consensus 318 ~s~~g~~~laS~S~D~tvklWD~~~---~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~-- 392 (524)
T 2j04_B 318 YSDFEDTVVSTVAVDGYFYIFNPKD---IATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHP-- 392 (524)
T ss_dssp CCTTSCCEEEEEETTSEEEEECGGG---HHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEE--
T ss_pred cCCCCCeEEEEeccCCeEEEEECCC---CCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECccccccee--
Confidence 78888 8999999999999999953 233334556653 588999999999999999999999999988763221
Q ss_pred cccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeC-----CCCCeEEEEEccCCC
Q psy9598 703 DMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKG-----HTNEVFVLESHPFDS 777 (1915)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~g-----H~~~V~sl~~sp~dg 777 (1915)
..+|...|++|+|+|+|.+|++|+. ||+|++||+..+ ++..+.. +...|++++|+| ++
T Consensus 393 --------------l~gH~~~V~sva~Sp~g~~l~Sgs~-Dgtv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp-~g 455 (524)
T 2j04_B 393 --------------LVSRETTITAIGVSRLHPMVLAGSA-DGSLIITNAARR-LLHGIKNSSATQKSLRLWKWDYSI-KD 455 (524)
T ss_dssp --------------EEECSSCEEEEECCSSCCBCEEEET-TTEEECCBSCSS-TTTCC------CCCCEEEECBCCS-SS
T ss_pred --------------eecCCCceEEEEeCCCCCeEEEEEC-CCEEEEEechHh-hccccccCccceeeeEEEEeccCC-CC
Confidence 2347889999999999999999988 999999998654 2222211 112478999999 77
Q ss_pred CEEEEEecCceEEEEECC-CCccccceeeeeeecCCCCcceEEEEEcCCC---CEEEEEeCCCeEEEEeCCCC
Q psy9598 778 RVLLSAGHDGLIIIWDIL-SSKQRGYKWFHNIVEGQGEGALFDGKWSPDG---TTCALTDSYGHLLVYGLGGF 846 (1915)
Q Consensus 778 ~~LaSgs~DG~I~IWdl~-s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg---~~Lasg~~dG~I~Iwdl~s~ 846 (1915)
..+ .... .+.+|+.. ++.+ +..+. .|.+.|.+|+|+|++ ..||+|+.+|.|+||++...
T Consensus 456 ~~~-~~~~--~~~~~~~~~~g~~--~~~l~-----gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~~ 518 (524)
T 2j04_B 456 DKY-RIDS--SYEVYPLTVNDVS--KAKID-----AHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSLE 518 (524)
T ss_dssp CEE-EECC--CCCCCC--------------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSCC
T ss_pred CeE-EccC--CceecccccCCcc--eeeec-----CCCceEEEEECCCCCCccHHHHhhccCceEEEEEcccc
Confidence 744 2222 23344332 2333 33332 466899999999995 49999999999999998754
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-33 Score=352.63 Aligned_cols=318 Identities=12% Similarity=0.137 Sum_probs=261.2
Q ss_pred cCCCeEEEecccCCceeeeEEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCC----CcEEEEEeCCCCCEEEEEE
Q psy9598 451 PLSRSLMISSHKYSNLRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARD----GKLLATLRGCSGEISDIAI 526 (1915)
Q Consensus 451 ~~d~~~~i~~~~~~~~~~~~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~t----g~~~~~l~gH~~~I~~Laf 526 (1915)
+.++.+.+|+.............+|...|+|++|+|++.+|++|+.||.|+||++.+ ...+..+.+|...|++|+|
T Consensus 42 ~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~ 121 (416)
T 2pm9_A 42 STDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKF 121 (416)
T ss_dssp CCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEE
T ss_pred CCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEE
Confidence 788899999876543221222347999999999999999999999999999999988 4588999999999999999
Q ss_pred eCC-CCEEEEEeCCCcEEEEECCCCc------eEE---EeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccC
Q psy9598 527 DNR-NILLAAGTVDKTIRIWNLQTLA------PIS---VLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLD 596 (1915)
Q Consensus 527 spd-g~~LaSgs~DgtIrVWDl~tg~------~~~---~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~ 596 (1915)
+|+ +.+|++|+.|+.|+|||+.++. ... .+.+|...|.+++|+|. ++.+|++++.||.|++||+.++
T Consensus 122 ~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~l~~~~~dg~v~iwd~~~~ 198 (416)
T 2pm9_A 122 NAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQS---LAHVFASAGSSNFASIWDLKAK 198 (416)
T ss_dssp CSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSS---CTTEEEEESSSSCEEEEETTTT
T ss_pred cCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCC---CCcEEEEEcCCCCEEEEECCCC
Confidence 998 8999999999999999999876 333 34679999999999994 2589999999999999999987
Q ss_pred ccccceeccCccccccccCCCCCceEEEEECCCC-cEEEEEeCCC---eEEEEEecCCCCCceeEEec-cCCCCeeEEEE
Q psy9598 597 IDISKTVFHEPVMFNERIRPGNAHILCSSFSPGG-LFLATGSGDH---HVRVYKMDGVDSPLGILEVE-EHSDKVDSIQW 671 (1915)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg-~~Lasgs~Dg---~I~IwDl~~~~~~~~i~~l~-~h~~~V~sl~f 671 (1915)
..+..+.... ...+|...|.+++|+|++ .+|++|+.|+ .|++||+.... ..+..+. +|...|.+++|
T Consensus 199 ~~~~~~~~~~------~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~--~~~~~~~~~~~~~v~~~~~ 270 (416)
T 2pm9_A 199 KEVIHLSYTS------PNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNAN--TPLQTLNQGHQKGILSLDW 270 (416)
T ss_dssp EEEEEECCCC------CSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTT--SCSBCCCSCCSSCEEEEEE
T ss_pred CcceEEeccc------cccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCC--CCcEEeecCccCceeEEEe
Confidence 6544433221 112346889999999997 6899999999 99999995432 3344566 89999999999
Q ss_pred cC-CCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCC-CEEEEEEecCCeEEEE
Q psy9598 672 SH-SHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASD-RWVITAINFNFQIKIW 749 (1915)
Q Consensus 672 sp-dg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg-~~L~t~s~~Dg~I~vw 749 (1915)
+| ++.+|++++.||.|++||+.+++..... ..|...|.+++|+|++ .+|++++. |+.|+||
T Consensus 271 s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~----------------~~~~~~v~~~~~s~~~~~~l~s~~~-d~~i~iw 333 (416)
T 2pm9_A 271 CHQDEHLLLSSGRDNTVLLWNPESAEQLSQF----------------PARGNWCFKTKFAPEAPDLFACASF-DNKIEVQ 333 (416)
T ss_dssp CSSCSSCEEEEESSSEEEEECSSSCCEEEEE----------------ECSSSCCCCEEECTTCTTEEEECCS-SSEEEEE
T ss_pred CCCCCCeEEEEeCCCCEEEeeCCCCccceee----------------cCCCCceEEEEECCCCCCEEEEEec-CCcEEEE
Confidence 99 8999999999999999999987754322 2366788999999999 78888887 9999999
Q ss_pred ECCCCceEEEee-----------------------------------CCCCCeEEEEEccCCCCEEEEEecCceEEEEEC
Q psy9598 750 DAFNGDLVQVLK-----------------------------------GHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDI 794 (1915)
Q Consensus 750 D~~tg~~i~~l~-----------------------------------gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl 794 (1915)
++.++....... .|...|.+++|+| ++.+|++|+.||+|+||++
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~la~~~~d~~v~~w~~ 412 (416)
T 2pm9_A 334 TLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAF-GGKLVQITPDGKGVSITNP 412 (416)
T ss_dssp ESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEET-TTEEECBCTTSSCBCCBCC
T ss_pred EccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEee-CCeEEEEeCCCCeEEEEEe
Confidence 998765322211 1677888999999 9999999999999999999
Q ss_pred CCC
Q psy9598 795 LSS 797 (1915)
Q Consensus 795 ~s~ 797 (1915)
.+.
T Consensus 413 ~~~ 415 (416)
T 2pm9_A 413 KIS 415 (416)
T ss_dssp CCC
T ss_pred ccC
Confidence 764
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-32 Score=346.91 Aligned_cols=342 Identities=10% Similarity=0.086 Sum_probs=252.9
Q ss_pred eeeEEe-cCCCCcEEEEEEcC-CCCEEEEEECCCcEEEEECCC---Cc---EEEEEeCCCCCEEEEEEeCCCCEEEEEeC
Q psy9598 467 RQHYVN-LGHLSAVFCVLFDK-LGEVIVTGADDLLIKLWRARD---GK---LLATLRGCSGEISDIAIDNRNILLAAGTV 538 (1915)
Q Consensus 467 ~~~~~l-~gH~~~V~~vafsp-dg~~LaTGs~Dg~I~IWd~~t---g~---~~~~l~gH~~~I~~Lafspdg~~LaSgs~ 538 (1915)
+++..+ .+|.+.|+||+|+| +|.+||||+.||+|+|||+.+ +. ....+ +|.+.|++|+|++++.+|++|+.
T Consensus 53 ~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~ 131 (437)
T 3gre_A 53 KLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAVSSK 131 (437)
T ss_dssp CEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEEEET
T ss_pred eEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEEEeC
Confidence 445567 89999999999999 999999999999999999876 43 23333 59999999999999999999999
Q ss_pred CCcEEEEECC---CCceEEEeecC------------CCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCcccccee
Q psy9598 539 DKTIRIWNLQ---TLAPISVLVGH------------QGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTV 603 (1915)
Q Consensus 539 DgtIrVWDl~---tg~~~~~l~~h------------~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~ 603 (1915)
||+|+|||+. ++..+..+.+| ...+.++.+... .++.+|++|+.||+|++||+.++..+..+.
T Consensus 132 dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 209 (437)
T 3gre_A 132 DGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVN--EEKSLLVALTNLSRVIIFDIRTLERLQIIE 209 (437)
T ss_dssp TSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEEC--SSCEEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred CCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEc--CCCCEEEEEeCCCeEEEEeCCCCeeeEEEc
Confidence 9999999994 66666555443 344555553321 156899999999999999999876544433
Q ss_pred ccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEec-cCCCCeeEEEEcC----CCCEE
Q psy9598 604 FHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVE-EHSDKVDSIQWSH----SHLRF 678 (1915)
Q Consensus 604 ~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~-~h~~~V~sl~fsp----dg~~L 678 (1915)
.. .|...|.+++|+|++.+|++|+.||.|++||+. ....+..+. .|...|.+++|+| ++.+|
T Consensus 210 ~~----------~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~---~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l 276 (437)
T 3gre_A 210 NS----------PRHGAVSSICIDEECCVLILGTTRGIIDIWDIR---FNVLIRSWSFGDHAPITHVEVCQFYGKNSVIV 276 (437)
T ss_dssp CC----------GGGCCEEEEEECTTSCEEEEEETTSCEEEEETT---TTEEEEEEBCTTCEEEEEEEECTTTCTTEEEE
T ss_pred cC----------CCCCceEEEEECCCCCEEEEEcCCCeEEEEEcC---CccEEEEEecCCCCceEEEEeccccCCCccEE
Confidence 21 156789999999999999999999999999994 345555554 7888999996664 57799
Q ss_pred EEEeCCCcEEEEEccCCceEEeeecccccCCCCcc--------ccccc--cccccEEEEEECCCCCEEEEEEecCCeEEE
Q psy9598 679 VSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKE--------TSDET--NKKIKVTMVAWDASDRWVITAINFNFQIKI 748 (1915)
Q Consensus 679 ~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~--------~~~~~--~~~~~V~~va~spdg~~L~t~s~~Dg~I~v 748 (1915)
++|+.||.|+|||+.++.+................ ..... .+...|++++|+ ++.+|++++. ||.|++
T Consensus 277 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~-d~~i~~ 354 (437)
T 3gre_A 277 VGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEA-TSSIVM 354 (437)
T ss_dssp EEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGG-GTEEEE
T ss_pred EEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCC-CCeEEE
Confidence 99999999999999988876654432211110000 00112 277889999999 7888888888 999999
Q ss_pred EECCCCceEEEeeCCCC---CeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCC
Q psy9598 749 WDAFNGDLVQVLKGHTN---EVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPD 825 (1915)
Q Consensus 749 wD~~tg~~i~~l~gH~~---~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpd 825 (1915)
||+.+++++..+.+|.. .+..+.+++ ...+++.. |+...... ...+ ..|...|.+++|+++
T Consensus 355 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--------~~~~~~~~--~~~~-----~~h~~~I~~i~~~~~ 418 (437)
T 3gre_A 355 FSLNELSSSKAVISPSRFSDVFIPTQVTA-NLTMLLRK--------MKRTSTHS--VDDS-----LYHHDIINSISTCEV 418 (437)
T ss_dssp EETTCGGGCEEEECC--CCCEEEEEEEET-TEEEEEEE--------CC--------------------CCCEEEEEEEES
T ss_pred EECCCcccceEEecccccCceEEEEEeec-ceEEEEEe--------cccccccc--cCcc-----cccccceeeEeeecc
Confidence 99999999999998754 344444554 33333333 22222222 2111 246789999999998
Q ss_pred --CCEEEEEeCCCeEEEEe
Q psy9598 826 --GTTCALTDSYGHLLVYG 842 (1915)
Q Consensus 826 --g~~Lasg~~dG~I~Iwd 842 (1915)
+.+|++|+.||.|+||.
T Consensus 419 ~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 419 DETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp SSSEEEEEEETTSCEEEEC
T ss_pred CCceEEEEEcCCceEEEeC
Confidence 88999999999999995
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-33 Score=347.00 Aligned_cols=295 Identities=15% Similarity=0.156 Sum_probs=229.9
Q ss_pred ecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCC--cEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCC
Q psy9598 472 NLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDG--KLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQT 549 (1915)
Q Consensus 472 l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg--~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~t 549 (1915)
+..|.++|+|++|+|+|++||+|+.||.|+||++.++ .++..+.+|...|++++|+|++.+|++|+.|++|+|||+.+
T Consensus 7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~ 86 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRP 86 (377)
T ss_dssp EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC----
T ss_pred EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCC
Confidence 3446789999999999999999999999999999998 78888999999999999999999999999999999999998
Q ss_pred Cc---eEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCC-CCCceEEEE
Q psy9598 550 LA---PISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRP-GNAHILCSS 625 (1915)
Q Consensus 550 g~---~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~-~~~~V~~l~ 625 (1915)
+. +...+.+|...|++++|+|+ +.+|++|+.||+|++||+.++...... ..+.. |...|.+++
T Consensus 87 ~~~~~~~~~~~~~~~~v~~~~~~~~----~~~l~~~~~d~~i~iwd~~~~~~~~~~---------~~~~~~h~~~v~~~~ 153 (377)
T 3dwl_C 87 DGTWKQTLVLLRLNRAATFVRWSPN----EDKFAVGSGARVISVCYFEQENDWWVS---------KHLKRPLRSTILSLD 153 (377)
T ss_dssp --CCCCEEECCCCSSCEEEEECCTT----SSCCEEEESSSCEEECCC-----CCCC---------EEECSSCCSCEEEEE
T ss_pred CCceeeeeEecccCCceEEEEECCC----CCEEEEEecCCeEEEEEECCcccceee---------eEeecccCCCeEEEE
Confidence 77 77888899999999999994 489999999999999999877521111 11223 678999999
Q ss_pred ECCCCcEEEEEeCCCeEEEEEecCCC---------------CCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEE
Q psy9598 626 FSPGGLFLATGSGDHHVRVYKMDGVD---------------SPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIW 690 (1915)
Q Consensus 626 fspdg~~Lasgs~Dg~I~IwDl~~~~---------------~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IW 690 (1915)
|+|++.+|++|+.||.|++||+.... ....+..+ +|...|.+++|+|++.+|++|+.||.|+||
T Consensus 154 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw 232 (377)
T 3dwl_C 154 WHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIA 232 (377)
T ss_dssp ECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-C
T ss_pred EcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEE
Confidence 99999999999999999999984211 12334445 899999999999999999999999999999
Q ss_pred EccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCc--e------------
Q psy9598 691 YYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGD--L------------ 756 (1915)
Q Consensus 691 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~--~------------ 756 (1915)
|+.++..... .......|...|.+++|+|++.+|++++. ++.+ +|+..... .
T Consensus 233 d~~~~~~~~~------------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 298 (377)
T 3dwl_C 233 YPSAPEQPPR------------ALITVKLSQLPLRSLLWANESAIVAAGYN-YSPI-LLQGNESGWAHTRDLDAGTSKTS 298 (377)
T ss_dssp EECSTTSCEE------------ECCCEECSSSCEEEEEEEETTEEEEEESS-SSEE-EECCCC---CCSBCCCSCCCCCC
T ss_pred ECCCCCCcce------------eeEeecCCCCceEEEEEcCCCCEEEEEcC-CcEE-EEEeCCCceEEEeeecccccccc
Confidence 9988763110 01223457788999999999999888764 5555 77654211 0
Q ss_pred -------------E---------EEe----------------eCCCCCeEEEEEccCCCC---EEEEEecCceEEEEEC
Q psy9598 757 -------------V---------QVL----------------KGHTNEVFVLESHPFDSR---VLLSAGHDGLIIIWDI 794 (1915)
Q Consensus 757 -------------i---------~~l----------------~gH~~~V~sl~~sp~dg~---~LaSgs~DG~I~IWdl 794 (1915)
. ..+ .+|.+.|++|++.+.++. .|+|||.||.|+|||+
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 299 FTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp BSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred cccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 0 111 139999999998763444 7999999999999986
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-31 Score=334.34 Aligned_cols=311 Identities=15% Similarity=0.148 Sum_probs=251.6
Q ss_pred EEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCc------eEEEeecCCCCeEEEEeccCccCCC---cEEE
Q psy9598 510 LLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLA------PISVLVGHQGIITGVNFCPLEVNGF---NYLA 580 (1915)
Q Consensus 510 ~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~------~~~~l~~h~~~V~sl~fsp~~~~d~---~~L~ 580 (1915)
....+.+|.+.|++|+|+| .+|++|+.||+|+||++.++. .+..+.+|...|++++|+|....++ .+|+
T Consensus 8 ~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~ 85 (397)
T 1sq9_A 8 TANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVA 85 (397)
T ss_dssp EEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEE
T ss_pred hhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEE
Confidence 4556789999999999998 799999999999999999988 7889999999999999999411126 8999
Q ss_pred EEeCCCeEEEEecccCccccceeccCccccccccCCC-----CCceEEEEEC----CCCcE-EEEEeCCCeEEEEEecC-
Q psy9598 581 STSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPG-----NAHILCSSFS----PGGLF-LATGSGDHHVRVYKMDG- 649 (1915)
Q Consensus 581 sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~-----~~~V~~l~fs----pdg~~-Lasgs~Dg~I~IwDl~~- 649 (1915)
+++.||.|++|++.++....... ...+..| ...|.+++|+ |++.+ |++|+.||.|++||+..
T Consensus 86 s~~~dg~i~iw~~~~~~~~~~~~-------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 158 (397)
T 1sq9_A 86 TTSFSGDLLFYRITREDETKKVI-------FEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPF 158 (397)
T ss_dssp EEETTSCEEEEEEEECTTTCCEE-------EEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESS
T ss_pred EEcCCCCEEEEEccCCccccccc-------ceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcc
Confidence 99999999999998875411110 1112233 4889999999 99999 99999999999999965
Q ss_pred -----CCCCc--eeEEe-------ccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCcccc
Q psy9598 650 -----VDSPL--GILEV-------EEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETS 715 (1915)
Q Consensus 650 -----~~~~~--~i~~l-------~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~ 715 (1915)
..... ....+ ..|...|.+++|+|++ +|++|+.||.|++||+.++........
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~------------ 225 (397)
T 1sq9_A 159 ADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFES------------ 225 (397)
T ss_dssp SSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEEC------------
T ss_pred ccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEec------------
Confidence 22211 11134 4589999999999999 999999999999999998765432211
Q ss_pred ccccc---cccEEEEEECCCCCEEEEEEecC---CeEEEEECCCCceEEEeeC-------------CCCCeEEEEEccCC
Q psy9598 716 DETNK---KIKVTMVAWDASDRWVITAINFN---FQIKIWDAFNGDLVQVLKG-------------HTNEVFVLESHPFD 776 (1915)
Q Consensus 716 ~~~~~---~~~V~~va~spdg~~L~t~s~~D---g~I~vwD~~tg~~i~~l~g-------------H~~~V~sl~~sp~d 776 (1915)
...| ...|.+++|+|++.+|++++. | |.|++||+.+++++..+.+ |...|++++|+| +
T Consensus 226 -~~~h~~~~~~i~~i~~~~~~~~l~~~~~-d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~ 302 (397)
T 1sq9_A 226 -QHSMINNSNSIRSVKFSPQGSLLAIAHD-SNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFND-S 302 (397)
T ss_dssp -CC---CCCCCEEEEEECSSTTEEEEEEE-ETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECS-S
T ss_pred -cccccccCCccceEEECCCCCEEEEEec-CCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECC-C
Confidence 0124 678999999999999999998 8 9999999999999999999 999999999999 9
Q ss_pred CCEEEEEecCceEEEEECCCCccccceeeeeeecC-CC---------------CcceEEEEEcCCC----------CEEE
Q psy9598 777 SRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEG-QG---------------EGALFDGKWSPDG----------TTCA 830 (1915)
Q Consensus 777 g~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~-~~---------------~~~V~~vafSpdg----------~~La 830 (1915)
+.+|++|+.||.|+|||+.+++. +..+...... .+ ...|.+++|+|+| .+|+
T Consensus 303 ~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~ 380 (397)
T 1sq9_A 303 GETLCSAGWDGKLRFWDVKTKER--ITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLC 380 (397)
T ss_dssp SSEEEEEETTSEEEEEETTTTEE--EEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEE
T ss_pred CCEEEEEeCCCeEEEEEcCCCce--eEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEE
Confidence 99999999999999999998877 5555411110 22 6889999999999 7999
Q ss_pred EEeCCCeEEEEeCCCCc
Q psy9598 831 LTDSYGHLLVYGLGGFK 847 (1915)
Q Consensus 831 sg~~dG~I~Iwdl~s~~ 847 (1915)
+++.||.|+||++.+++
T Consensus 381 s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 381 CVCLDRSIRWFREAGGK 397 (397)
T ss_dssp EEETTTEEEEEEEEC--
T ss_pred EecCCCcEEEEEcCCCC
Confidence 99999999999998763
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-31 Score=317.74 Aligned_cols=294 Identities=18% Similarity=0.200 Sum_probs=250.9
Q ss_pred CcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCe
Q psy9598 508 GKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGC 587 (1915)
Q Consensus 508 g~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~Dgt 587 (1915)
.+++.++.+|.+.|++|+| +++.+|++|+.||.|+|||+.++.....+..|...|.+++|+|+ +.+|++|+.||.
T Consensus 8 ~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~l~~~~~dg~ 82 (313)
T 3odt_A 8 YQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSE----KELLLFGGKDTM 82 (313)
T ss_dssp CEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETT----TTEEEEEETTSC
T ss_pred HHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCC----CCEEEEecCCCe
Confidence 3788899999999999999 99999999999999999999999999999999999999999994 589999999999
Q ss_pred EEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCee
Q psy9598 588 IGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVD 667 (1915)
Q Consensus 588 I~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~ 667 (1915)
|++|++....... ....+..|...|.+++| ++.+|++|+.||.|++||. ...+..+..|...|.
T Consensus 83 i~~~~~~~~~~~~---------~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d~-----~~~~~~~~~~~~~v~ 146 (313)
T 3odt_A 83 INGVPLFATSGED---------PLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWKE-----GSLVYNLQAHNASVW 146 (313)
T ss_dssp EEEEETTCCTTSC---------C-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEET-----TEEEEEEECCSSCEE
T ss_pred EEEEEeeecCCCC---------cccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEcC-----CcEEEecccCCCcee
Confidence 9999987653211 11223467789999999 5779999999999999992 355677889999999
Q ss_pred EEEEcC-CCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeE
Q psy9598 668 SIQWSH-SHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQI 746 (1915)
Q Consensus 668 sl~fsp-dg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I 746 (1915)
+++|++ ++.+|++++.||.|++||.... .... ...+...|.+++|++++. +++++. ||.|
T Consensus 147 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~--~~~~---------------~~~~~~~i~~~~~~~~~~-~~~~~~-dg~i 207 (313)
T 3odt_A 147 DAKVVSFSENKFLTASADKTIKLWQNDKV--IKTF---------------SGIHNDVVRHLAVVDDGH-FISCSN-DGLI 207 (313)
T ss_dssp EEEEEETTTTEEEEEETTSCEEEEETTEE--EEEE---------------CSSCSSCEEEEEEEETTE-EEEEET-TSEE
T ss_pred EEEEccCCCCEEEEEECCCCEEEEecCce--EEEE---------------eccCcccEEEEEEcCCCe-EEEccC-CCeE
Confidence 999988 8999999999999999993321 1111 112667899999999998 777777 9999
Q ss_pred EEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCC
Q psy9598 747 KIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDG 826 (1915)
Q Consensus 747 ~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg 826 (1915)
++||+.+++++..+.+|.+.|++++|+| ++ .|++|+.||.|+|||+.+++. +..+. .+...|.+++|+|+|
T Consensus 208 ~i~d~~~~~~~~~~~~~~~~i~~~~~~~-~~-~l~~~~~dg~v~iwd~~~~~~--~~~~~-----~~~~~i~~~~~~~~~ 278 (313)
T 3odt_A 208 KLVDMHTGDVLRTYEGHESFVYCIKLLP-NG-DIVSCGEDRTVRIWSKENGSL--KQVIT-----LPAISIWSVDCMSNG 278 (313)
T ss_dssp EEEETTTCCEEEEEECCSSCEEEEEECT-TS-CEEEEETTSEEEEECTTTCCE--EEEEE-----CSSSCEEEEEECTTS
T ss_pred EEEECCchhhhhhhhcCCceEEEEEEec-CC-CEEEEecCCEEEEEECCCCce--eEEEe-----ccCceEEEEEEccCC
Confidence 9999999999999999999999999999 76 589999999999999999887 55554 456789999999999
Q ss_pred CEEEEEeCCCeEEEEeCCCCccccc
Q psy9598 827 TTCALTDSYGHLLVYGLGGFKRPQN 851 (1915)
Q Consensus 827 ~~Lasg~~dG~I~Iwdl~s~~~~~~ 851 (1915)
. |++++.||.|+||++.++.....
T Consensus 279 ~-~~~~~~dg~i~iw~~~~~~~~~~ 302 (313)
T 3odt_A 279 D-IIVGSSDNLVRIFSQEKSRWASE 302 (313)
T ss_dssp C-EEEEETTSCEEEEESCGGGCCC-
T ss_pred C-EEEEeCCCcEEEEeCCCCceeeh
Confidence 8 66799999999999998766543
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-31 Score=326.45 Aligned_cols=310 Identities=18% Similarity=0.234 Sum_probs=236.7
Q ss_pred EEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCC----cEEEEEeCCCCCEEEEEEeC--CCCEEEEEeCCCcEE
Q psy9598 470 YVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDG----KLLATLRGCSGEISDIAIDN--RNILLAAGTVDKTIR 543 (1915)
Q Consensus 470 ~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg----~~~~~l~gH~~~I~~Lafsp--dg~~LaSgs~DgtIr 543 (1915)
..+.||.+.|+||+|+|+|.+||+|+.||.|+|||+.++ .++..+.+|...|++|+|++ ++.+|++|+.||+|+
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~ 84 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK 84 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence 357899999999999999999999999999999999877 57788899999999999999 699999999999999
Q ss_pred EEECCCC---------ceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccc-cccc
Q psy9598 544 IWNLQTL---------APISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVM-FNER 613 (1915)
Q Consensus 544 VWDl~tg---------~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~-~~~~ 613 (1915)
|||+.++ .++..+.+|.+.|.+++|+|.. .+.+|++|+.||.|++||+.++..+.......... ....
T Consensus 85 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 162 (351)
T 3f3f_A 85 LWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAH--LGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIP 162 (351)
T ss_dssp EEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGG--GCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCC
T ss_pred EEecCCCcccccccCcceeeeecccCCceeEEEEcCCC--CCcEEEEecCCCcEEEecCCChHHhccccccccccccccc
Confidence 9999887 5688889999999999999951 15899999999999999999887665544321111 1112
Q ss_pred cCCCCCceEEEEECCC---CcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCC----CEEEEEeCCCc
Q psy9598 614 IRPGNAHILCSSFSPG---GLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSH----LRFVSGSRDGT 686 (1915)
Q Consensus 614 ~~~~~~~V~~l~fspd---g~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg----~~L~sgs~DG~ 686 (1915)
...+...+.+++|+|+ +.+|++|+.++.+.+|+. .......+..+.+|...|.+++|+|++ .+|++|+.||.
T Consensus 163 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~ 241 (351)
T 3f3f_A 163 PANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRG-KDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGR 241 (351)
T ss_dssp CSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEEC-TTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSC
T ss_pred cCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEcc-CCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCe
Confidence 2356788999999997 899999999999977776 333444567788999999999999998 89999999999
Q ss_pred EEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEe---cCCeEEEEECCCCceEEEeeCC
Q psy9598 687 ALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAIN---FNFQIKIWDAFNGDLVQVLKGH 763 (1915)
Q Consensus 687 I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~---~Dg~I~vwD~~tg~~i~~l~gH 763 (1915)
|++||+..+....... .....+....+++....+..+.. ....+.+|+..++.++..+.+|
T Consensus 242 i~iwd~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 305 (351)
T 3f3f_A 242 IRIFKITEKLSPLASE----------------ESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDH 305 (351)
T ss_dssp EEEEEEEECC-------------------------------------------------------CCSEEEEEEEEECTT
T ss_pred EEEEeCCCCcCccccC----------------CcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecc
Confidence 9999998765322110 01111222222222222222221 1456677777778889999999
Q ss_pred CCCeEEEEEccCCCCEEEEEecCceEEEEECCCCcc
Q psy9598 764 TNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQ 799 (1915)
Q Consensus 764 ~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~ 799 (1915)
...|++++|+| ++.+|++|+.||.|+||++.++..
T Consensus 306 ~~~v~~~~~s~-~~~~l~s~~~dg~v~iw~~~~~~~ 340 (351)
T 3f3f_A 306 NGEVWSVSWNL-TGTILSSAGDDGKVRLWKATYSNE 340 (351)
T ss_dssp SSCEEEEEECS-SSCCEEEEETTSCEEEEEECTTSC
T ss_pred cccEEEEEEcC-CCCEEEEecCCCcEEEEecCcCcc
Confidence 99999999999 999999999999999999998776
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-31 Score=318.36 Aligned_cols=283 Identities=21% Similarity=0.327 Sum_probs=240.8
Q ss_pred EEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEe--CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEe
Q psy9598 479 VFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLR--GCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVL 556 (1915)
Q Consensus 479 V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~--gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l 556 (1915)
+++|+||+++ +||+|. |++|+|||+.+|+++..+. +|...|++|+|+|++++||+|+.||+|+|||+.+++++..+
T Consensus 28 ~~~l~WS~~~-~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~ 105 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM 105 (318)
T ss_dssp CBCEEECTTS-EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred ceEEEECCCC-EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEe
Confidence 4679999876 777765 8999999999999888775 67788999999999999999999999999999999999999
Q ss_pred ecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEE
Q psy9598 557 VGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATG 636 (1915)
Q Consensus 557 ~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasg 636 (1915)
.+|...+.++.+.+ ..|++|+.++.+++|+........ ..+..|...+.++.|++++.+|++|
T Consensus 106 ~~h~~~~~~~~~~~------~~l~s~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~l~s~ 168 (318)
T 4ggc_A 106 TSHSARVGSLSWNS------YILSSGSRSGHIHHHDVRVAEHHV-----------ATLSGHSQEVCGLRWAPDGRHLASG 168 (318)
T ss_dssp ECCSSCEEEEEEET------TEEEEEETTSEEEEEETTSSSCEE-----------EEEECCSSCEEEEEECTTSSEEEEE
T ss_pred cCccceEEEeecCC------CEEEEEecCCceEeeecCCCceeE-----------EEEcCccCceEEEEEcCCCCEEEEE
Confidence 99999998887765 799999999999999987654211 1233567889999999999999999
Q ss_pred eCCCeEEEEEecCCCC-CceeEEeccCCCCeeEEEEcCCCCEE---EEEeCCCcEEEEEccCCceEEeeecccccCCCCc
Q psy9598 637 SGDHHVRVYKMDGVDS-PLGILEVEEHSDKVDSIQWSHSHLRF---VSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTK 712 (1915)
Q Consensus 637 s~Dg~I~IwDl~~~~~-~~~i~~l~~h~~~V~sl~fspdg~~L---~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~ 712 (1915)
+.||.|+|||+..... .........|.+.|.++++++.+..+ ++++.+++|++||.........
T Consensus 169 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~------------ 236 (318)
T 4ggc_A 169 GNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSA------------ 236 (318)
T ss_dssp ETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEE------------
T ss_pred ecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccc------------
Confidence 9999999999964332 23345567788999999999987633 4667889999999987764432
Q ss_pred cccccccccccEEEEEECCCCCEEEEEEe-cCCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEE
Q psy9598 713 ETSDETNKKIKVTMVAWDASDRWVITAIN-FNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIII 791 (1915)
Q Consensus 713 ~~~~~~~~~~~V~~va~spdg~~L~t~s~-~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~I 791 (1915)
..+...+..++|++++..+++++. .|+.|+|||+.+++++..+.+|.+.|++|+|+| ++.+|+|||.||+|+|
T Consensus 237 -----~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~sp-dg~~l~S~s~D~~v~i 310 (318)
T 4ggc_A 237 -----VDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSP-DGATVASAAADETLRL 310 (318)
T ss_dssp -----EECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSCEEEEETTTEEEE
T ss_pred -----ccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcC-CCCEEEEEecCCeEEE
Confidence 124567899999999999887753 489999999999999999999999999999999 9999999999999999
Q ss_pred EECCCCc
Q psy9598 792 WDILSSK 798 (1915)
Q Consensus 792 Wdl~s~~ 798 (1915)
||+....
T Consensus 311 Wd~~~~d 317 (318)
T 4ggc_A 311 WRCFELD 317 (318)
T ss_dssp ECCSCCC
T ss_pred EECCCCC
Confidence 9997643
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-32 Score=348.07 Aligned_cols=299 Identities=18% Similarity=0.200 Sum_probs=235.0
Q ss_pred EEEEeCCCCCEEEEEEeC-CCCEEEEEeCCCcEEEEECCCCce--EEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCe
Q psy9598 511 LATLRGCSGEISDIAIDN-RNILLAAGTVDKTIRIWNLQTLAP--ISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGC 587 (1915)
Q Consensus 511 ~~~l~gH~~~I~~Lafsp-dg~~LaSgs~DgtIrVWDl~tg~~--~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~Dgt 587 (1915)
.....+|...|+||+|+| ++.+||+|+.||+|+|||+.++.. +..+.+|.+.|++|+|+|. ++.+|++|+.||+
T Consensus 112 ~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~---~~~~l~s~s~D~~ 188 (435)
T 4e54_B 112 LQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPL---NTNQFYASSMEGT 188 (435)
T ss_dssp CCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSS---CTTEEEEECSSSC
T ss_pred cccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCC---CCCEEEEEeCCCE
Confidence 344567889999999999 567999999999999999987754 4455689999999999983 4589999999999
Q ss_pred EEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCee
Q psy9598 588 IGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVD 667 (1915)
Q Consensus 588 I~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~ 667 (1915)
|++||+.++...... ....+...+.+++|+|++.+|++|+.||.|++||+.+ ..+..+.+|...|.
T Consensus 189 v~iwd~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~----~~~~~~~~h~~~v~ 254 (435)
T 4e54_B 189 TRLQDFKGNILRVFA----------SSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG----KELWNLRMHKKKVT 254 (435)
T ss_dssp EEEEETTSCEEEEEE----------CCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS----CBCCCSBCCSSCEE
T ss_pred EEEeeccCCceeEEe----------ccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc----ceeEEEecccceEE
Confidence 999999765321111 1113345678999999999999999999999999853 34556789999999
Q ss_pred EEEEcCCCC-EEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeE
Q psy9598 668 SIQWSHSHL-RFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQI 746 (1915)
Q Consensus 668 sl~fspdg~-~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I 746 (1915)
+|+|+|++. +|++|+.||+|+|||+++..... .......|...|++++|+|+|.+|++++. ||.|
T Consensus 255 ~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~-------------~~~~~~~h~~~v~~~~~spdg~~l~s~~~-D~~i 320 (435)
T 4e54_B 255 HVALNPCCDWFLATASVDQTVKIWDLRQVRGKA-------------SFLYSLPHRHPVNAACFSPDGARLLTTDQ-KSEI 320 (435)
T ss_dssp EEEECTTCSSEEEEEETTSBCCEEETTTCCSSS-------------CCSBCCBCSSCEEECCBCTTSSEEEEEES-SSCE
T ss_pred eeeecCCCceEEEEecCcceeeEEecccccccc-------------eEEEeeeccccccceeECCCCCeeEEEcC-CCEE
Confidence 999999986 78899999999999998765211 11223457889999999999999999998 9999
Q ss_pred EEEECCCCceEEEeeCCCC------CeEEEEEccCCCCEEEEEe------------cCceEEEEECCCCccccceeeeee
Q psy9598 747 KIWDAFNGDLVQVLKGHTN------EVFVLESHPFDSRVLLSAG------------HDGLIIIWDILSSKQRGYKWFHNI 808 (1915)
Q Consensus 747 ~vwD~~tg~~i~~l~gH~~------~V~sl~~sp~dg~~LaSgs------------~DG~I~IWdl~s~~~~~~~~~~~~ 808 (1915)
+|||+.++.+...+.+|.. .+..+.|+| ++.++++++ .++.|+|||+.++.. +..+.
T Consensus 321 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~--~~~l~-- 395 (435)
T 4e54_B 321 RVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHP-RYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKM--MCQLY-- 395 (435)
T ss_dssp EEEESSSSSSEEEECCCCCCCCSSSCCCBCEECS-SSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCE--EEEEC--
T ss_pred EEEECCCCccceEEecccccccccceeEEEEEcC-CCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcE--EEEEe--
Confidence 9999999999888877753 234456777 566666554 345799999999887 44432
Q ss_pred ecCCCCcceEEE-EEcCCCCEEEEEeCCCeEEEEeCCCCcc
Q psy9598 809 VEGQGEGALFDG-KWSPDGTTCALTDSYGHLLVYGLGGFKR 848 (1915)
Q Consensus 809 ~~~~~~~~V~~v-afSpdg~~Lasg~~dG~I~Iwdl~s~~~ 848 (1915)
..+...|.++ +|+|+|.+||+|+ |+.|+||++..++.
T Consensus 396 --~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk~ 433 (435)
T 4e54_B 396 --DPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEART 433 (435)
T ss_dssp --CSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC----
T ss_pred --CCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCee
Confidence 3456678776 6999999999876 78999999998764
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-31 Score=337.70 Aligned_cols=303 Identities=16% Similarity=0.261 Sum_probs=257.8
Q ss_pred cCccccccCCCeEEEecccCCceeeeEEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEE
Q psy9598 444 RSREYSGPLSRSLMISSHKYSNLRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISD 523 (1915)
Q Consensus 444 ~~r~~tg~~d~~~~i~~~~~~~~~~~~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~ 523 (1915)
....++|+.++.+.+|+... ......+.+|.+.|++++|++++ +|++|+.||+|+|||+.++.++..+.+|.+.|.+
T Consensus 132 ~~~l~sgs~dg~i~vwd~~~--~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~ 208 (464)
T 3v7d_B 132 DNYVITGADDKMIRVYDSIN--KKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRC 208 (464)
T ss_dssp TTEEEEEETTSCEEEEETTT--TEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEE
T ss_pred CCEEEEEcCCCcEEEEECCC--CcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEE
Confidence 45677899999999997543 45667889999999999999988 9999999999999999999999999999999999
Q ss_pred EEEe--CCCCEEEEEeCCCcEEEEECCCCc-----------------------eEEEeecCCCCeEEEEeccCccCCCcE
Q psy9598 524 IAID--NRNILLAAGTVDKTIRIWNLQTLA-----------------------PISVLVGHQGIITGVNFCPLEVNGFNY 578 (1915)
Q Consensus 524 Lafs--pdg~~LaSgs~DgtIrVWDl~tg~-----------------------~~~~l~~h~~~V~sl~fsp~~~~d~~~ 578 (1915)
++|+ +++.+|++|+.||+|++||+.++. .+..+.+|...|.++... +.+
T Consensus 209 l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~------~~~ 282 (464)
T 3v7d_B 209 LDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGH------GNI 282 (464)
T ss_dssp EEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEE------TTE
T ss_pred EEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCC------CCE
Confidence 9998 578899999999999999998765 256778899999988543 389
Q ss_pred EEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEE
Q psy9598 579 LASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILE 658 (1915)
Q Consensus 579 L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~ 658 (1915)
|++|+.||.|++||+.++..+.. +.+|...|.+++|+|++.+|++|+.||.|++||+. ....+..
T Consensus 283 l~~~~~d~~i~vwd~~~~~~~~~------------~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~---~~~~~~~ 347 (464)
T 3v7d_B 283 VVSGSYDNTLIVWDVAQMKCLYI------------LSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLE---NGELMYT 347 (464)
T ss_dssp EEEEETTSCEEEEETTTTEEEEE------------ECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETT---TTEEEEE
T ss_pred EEEEeCCCeEEEEECCCCcEEEE------------ecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC---CCcEEEE
Confidence 99999999999999987754322 23567889999999999999999999999999994 4567788
Q ss_pred eccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEE
Q psy9598 659 VEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVIT 738 (1915)
Q Consensus 659 l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t 738 (1915)
+.+|...|.+++|+ +.+|++|+.||.|++||+.+....... .+...+..++|++++.+|++
T Consensus 348 ~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~l~~ 408 (464)
T 3v7d_B 348 LQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSY-----------------HHTNLSAITTFYVSDNILVS 408 (464)
T ss_dssp ECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEE-----------------ECTTCCCEEEEEECSSEEEE
T ss_pred EeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeee-----------------cCCCCccEEEEEeCCCEEEE
Confidence 89999999999997 579999999999999999887643321 13445677899999999888
Q ss_pred EEecCCeEEEEECCCCceEEE-eeCCCCCeEEEEEccCCCCEEEEEecCceEEEEE
Q psy9598 739 AINFNFQIKIWDAFNGDLVQV-LKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWD 793 (1915)
Q Consensus 739 ~s~~Dg~I~vwD~~tg~~i~~-l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWd 793 (1915)
++ ||.|++||+.+++++.. +.+|...|++++|+. ..++++++.||.+.+|-
T Consensus 409 ~~--dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~~--~~l~~~~~~~g~~~i~~ 460 (464)
T 3v7d_B 409 GS--ENQFNIYNLRSGKLVHANILKDADQIWSVNFKG--KTLVAAVEKDGQSFLEI 460 (464)
T ss_dssp EE--TTEEEEEETTTCCEEESCTTTTCSEEEEEEEET--TEEEEEEEETTEEEEEE
T ss_pred ec--CCeEEEEECCCCcEEehhhccCCCcEEEEEecC--CEEEEEEEeCCeEEEEE
Confidence 76 89999999999999986 678999999999974 56666777788776654
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-31 Score=336.47 Aligned_cols=306 Identities=21% Similarity=0.375 Sum_probs=265.7
Q ss_pred ccCccccccCCCeEEEecccCCceeeeEEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEE
Q psy9598 443 LRSREYSGPLSRSLMISSHKYSNLRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEIS 522 (1915)
Q Consensus 443 l~~r~~tg~~d~~~~i~~~~~~~~~~~~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~ 522 (1915)
.....++|+.++.+.+|+... ......+.+|.+.|++++|+ +.+|++|+.||+|+|||+.+++++.++.+|...|.
T Consensus 128 ~g~~l~sg~~dg~i~vwd~~~--~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~ 203 (445)
T 2ovr_B 128 CGNRIVSGSDDNTLKVWSAVT--GKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVR 203 (445)
T ss_dssp ETTEEEEEETTSCEEEEETTT--CCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE
T ss_pred cCCEEEEEECCCcEEEEECCC--CcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEE
Confidence 345667899999999997643 45667899999999999998 67999999999999999999999999999999999
Q ss_pred EEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccce
Q psy9598 523 DIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKT 602 (1915)
Q Consensus 523 ~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~ 602 (1915)
+++|+ +.+|++|+.||+|++||+.++.++..+.+|...|.+++|. +.+|++|+.||.|++||+.++..+..
T Consensus 204 ~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~------~~~l~~~~~dg~i~iwd~~~~~~~~~- 274 (445)
T 2ovr_B 204 CMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYD------GRRVVSGAYDFMVKVWDPETETCLHT- 274 (445)
T ss_dssp EEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEEC------SSCEEEEETTSCEEEEEGGGTEEEEE-
T ss_pred EEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEEC------CCEEEEEcCCCEEEEEECCCCcEeEE-
Confidence 99996 5689999999999999999999999999999999999993 37899999999999999987754322
Q ss_pred eccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEe
Q psy9598 603 VFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGS 682 (1915)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs 682 (1915)
+..|...|.+++| ++.+|++|+.||.|++||+. ....+..+.+|...+.++.++ +.+|++|+
T Consensus 275 -----------~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~---~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~ 336 (445)
T 2ovr_B 275 -----------LQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVE---TGNCIHTLTGHQSLTSGMELK--DNILVSGN 336 (445)
T ss_dssp -----------ECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETT---TCCEEEEECCCCSCEEEEEEE--TTEEEEEE
T ss_pred -----------ecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECC---CCCEEEEEcCCcccEEEEEEe--CCEEEEEe
Confidence 2356688999999 78899999999999999994 445677888999999998875 66999999
Q ss_pred CCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEe--
Q psy9598 683 RDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVL-- 760 (1915)
Q Consensus 683 ~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l-- 760 (1915)
.||.|++||+.+++...... ....+...|.+++|+ +.+|++++. ||.|++||+.+++.+..+
T Consensus 337 ~dg~i~vwd~~~~~~~~~~~-------------~~~~~~~~v~~~~~~--~~~l~s~~~-dg~v~iwd~~~~~~~~~~~~ 400 (445)
T 2ovr_B 337 ADSTVKIWDIKTGQCLQTLQ-------------GPNKHQSAVTCLQFN--KNFVITSSD-DGTVKLWDLKTGEFIRNLVT 400 (445)
T ss_dssp TTSCEEEEETTTCCEEEEEC-------------STTSCSSCEEEEEEC--SSEEEEEET-TSEEEEEETTTCCEEEEEEE
T ss_pred CCCeEEEEECCCCcEEEEEc-------------cCCCCCCCEEEEEEC--CCEEEEEeC-CCeEEEEECCCCceeeeeec
Confidence 99999999998887544321 112366789999995 678999988 999999999999999988
Q ss_pred ---eCCCCCeEEEEEccCCCCEEEEEecCce----EEEEECCC
Q psy9598 761 ---KGHTNEVFVLESHPFDSRVLLSAGHDGL----IIIWDILS 796 (1915)
Q Consensus 761 ---~gH~~~V~sl~~sp~dg~~LaSgs~DG~----I~IWdl~s 796 (1915)
.+|.+.|++++|+| ++.+|++|+.||+ |.|||+..
T Consensus 401 ~~~~~~~~~v~~~~~s~-~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 401 LESGGSGGVVWRIRASN-TKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp CTTGGGTCEEEEEEECS-SEEEEEEECSSSSSCCEEEEEECCC
T ss_pred cccCCCCceEEEEEecC-CEEEEEEcccCCCCccEEEEEECCC
Confidence 47889999999999 9999999999998 99999965
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-31 Score=327.44 Aligned_cols=318 Identities=16% Similarity=0.125 Sum_probs=251.1
Q ss_pred EeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCc--eEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEE
Q psy9598 514 LRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLA--PISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFW 591 (1915)
Q Consensus 514 l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~--~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iW 591 (1915)
+..|.+.|++++|+|++.+|++|+.|+.|+|||+.++. .+..+.+|...|++++|+|+ +.+|++++.||.|++|
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~----~~~l~~~~~dg~i~vw 79 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPD----SNRIVTCGTDRNAYVW 79 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETT----TTEEEEEETTSCEEEE
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCC----CCEEEEEcCCCeEEEE
Confidence 45699999999999999999999999999999999987 88899999999999999994 4899999999999999
Q ss_pred ecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeE-EeccCCCCeeEEE
Q psy9598 592 KYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGIL-EVEEHSDKVDSIQ 670 (1915)
Q Consensus 592 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~-~l~~h~~~V~sl~ 670 (1915)
|+.++....... +..|...|.+++|+|++.+|++|+.||.|++||+.......... ...+|...|.+++
T Consensus 80 d~~~~~~~~~~~----------~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~ 149 (372)
T 1k8k_C 80 TLKGRTWKPTLV----------ILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLD 149 (372)
T ss_dssp EEETTEEEEEEE----------CCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEE
T ss_pred ECCCCeeeeeEE----------eecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEE
Confidence 997764322221 23466889999999999999999999999999996543322222 3367899999999
Q ss_pred EcCCCCEEEEEeCCCcEEEEEccCCceEEeee--cccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEE
Q psy9598 671 WSHSHLRFVSGSRDGTALIWYYKCSQWRFIRL--DMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKI 748 (1915)
Q Consensus 671 fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~v 748 (1915)
|+|++.+|++|+.||.|++||+.......... .................+...|.+++|+|++.+|++++. ||.|++
T Consensus 150 ~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~i 228 (372)
T 1k8k_C 150 WHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSH-DSTVCL 228 (372)
T ss_dssp ECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEET-TTEEEE
T ss_pred EcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeC-CCEEEE
Confidence 99999999999999999999975322100000 000000011112223357788999999999999999998 999999
Q ss_pred EECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCC--Cccccceee---------------------
Q psy9598 749 WDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILS--SKQRGYKWF--------------------- 805 (1915)
Q Consensus 749 wD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s--~~~~~~~~~--------------------- 805 (1915)
||+.+++++..+.+|...|++++|+| ++.+|++| .||.|++|++.+ +....+..+
T Consensus 229 ~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (372)
T 1k8k_C 229 ADADKKMAVATLASETLPLLAVTFIT-ESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLD 306 (372)
T ss_dssp EEGGGTTEEEEEECSSCCEEEEEEEE-TTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCC
T ss_pred EECCCCceeEEEccCCCCeEEEEEec-CCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcc
Confidence 99999999999999999999999999 88877777 999999999987 421000000
Q ss_pred -----e------eeecCCCCcceEEEEEc-CCC---CEEEEEeCCCeEEEEeCCCCcc
Q psy9598 806 -----H------NIVEGQGEGALFDGKWS-PDG---TTCALTDSYGHLLVYGLGGFKR 848 (1915)
Q Consensus 806 -----~------~~~~~~~~~~V~~vafS-pdg---~~Lasg~~dG~I~Iwdl~s~~~ 848 (1915)
. ..+...|.+.|++++|+ ++| .+|++|+.||.|+||++.+++.
T Consensus 307 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~~ 364 (372)
T 1k8k_C 307 KKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLES 364 (372)
T ss_dssp CCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHHH
T ss_pred cccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChhH
Confidence 0 11223567899999976 677 9999999999999999987543
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-31 Score=333.47 Aligned_cols=291 Identities=17% Similarity=0.308 Sum_probs=245.0
Q ss_pred EecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeC-CCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCC
Q psy9598 471 VNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRG-CSGEISDIAIDNRNILLAAGTVDKTIRIWNLQT 549 (1915)
Q Consensus 471 ~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~g-H~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~t 549 (1915)
...+|...+++.++++++..|++|+.||.|+||++.++.....+.. |...|++++|+|++.+|++|+.||.|+|||+.+
T Consensus 86 ~~~~~~~~~~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~ 165 (401)
T 4aez_A 86 DAPGIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVES 165 (401)
T ss_dssp ECTTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred eCCCCcCCceEEEEeecCCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcC
Confidence 4557877655544444456788899999999999999999888876 889999999999999999999999999999999
Q ss_pred CceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCC
Q psy9598 550 LAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPG 629 (1915)
Q Consensus 550 g~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspd 629 (1915)
+..+..+.+|...|.+++|++ .+|++|+.||.|++||+...... ...+..|...|.+++|+|+
T Consensus 166 ~~~~~~~~~~~~~v~~~~~~~------~~l~~~~~dg~i~i~d~~~~~~~-----------~~~~~~~~~~v~~~~~~~~ 228 (401)
T 4aez_A 166 QTKLRTMAGHQARVGCLSWNR------HVLSSGSRSGAIHHHDVRIANHQ-----------IGTLQGHSSEVCGLAWRSD 228 (401)
T ss_dssp CCEEEEECCCSSCEEEEEEET------TEEEEEETTSEEEEEETTSSSCE-----------EEEEECCSSCEEEEEECTT
T ss_pred CeEEEEecCCCCceEEEEECC------CEEEEEcCCCCEEEEecccCcce-----------eeEEcCCCCCeeEEEEcCC
Confidence 999999999999999999965 79999999999999999854321 1123357789999999999
Q ss_pred CcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCC-EEEEEe--CCCcEEEEEccCCceEEeeecccc
Q psy9598 630 GLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHL-RFVSGS--RDGTALIWYYKCSQWRFIRLDMNT 706 (1915)
Q Consensus 630 g~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~-~L~sgs--~DG~I~IWDl~~~~~~~~~~~~~~ 706 (1915)
+.+|++|+.||.|++||+. ....+..+.+|...|.+++|+|++. +|++|+ .||.|++||+.++......
T Consensus 229 ~~~l~s~~~d~~v~iwd~~---~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~----- 300 (401)
T 4aez_A 229 GLQLASGGNDNVVQIWDAR---SSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTV----- 300 (401)
T ss_dssp SSEEEEEETTSCEEEEETT---CSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEE-----
T ss_pred CCEEEEEeCCCeEEEccCC---CCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEE-----
Confidence 9999999999999999994 3556777889999999999999775 555654 7999999999988754422
Q ss_pred cCCCCccccccccccccEEEEEECCCCCEEEEEE-ecCCeEEEEECCCCceEE--EeeCCCCCeEEEEEccCCCCEEEEE
Q psy9598 707 CLPHTKETSDETNKKIKVTMVAWDASDRWVITAI-NFNFQIKIWDAFNGDLVQ--VLKGHTNEVFVLESHPFDSRVLLSA 783 (1915)
Q Consensus 707 ~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s-~~Dg~I~vwD~~tg~~i~--~l~gH~~~V~sl~~sp~dg~~LaSg 783 (1915)
.+...|.+++|++++.+|++++ ..||.|+|||+.++.... .+.+|.+.|++++|+| ++.+|++|
T Consensus 301 ------------~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~-dg~~l~s~ 367 (401)
T 4aez_A 301 ------------DAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSP-DGRILSTA 367 (401)
T ss_dssp ------------ECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECT-TSSEEEEE
T ss_pred ------------eCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECC-CCCEEEEE
Confidence 1345799999999999999965 239999999999876554 4679999999999999 99999999
Q ss_pred ecCceEEEEECCCCcc
Q psy9598 784 GHDGLIIIWDILSSKQ 799 (1915)
Q Consensus 784 s~DG~I~IWdl~s~~~ 799 (1915)
+.||.|+||++.+++.
T Consensus 368 ~~dg~i~iw~~~~~~~ 383 (401)
T 4aez_A 368 ASDENLKFWRVYDGDH 383 (401)
T ss_dssp CTTSEEEEEECCC---
T ss_pred eCCCcEEEEECCCCcc
Confidence 9999999999998876
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-32 Score=354.55 Aligned_cols=315 Identities=13% Similarity=0.092 Sum_probs=233.3
Q ss_pred cccccCCCeEEEecccCCcee--eeEEecCCCCcEEEEEEcCC------CCEEEEEECCCcEEEEECCCCcE--------
Q psy9598 447 EYSGPLSRSLMISSHKYSNLR--QHYVNLGHLSAVFCVLFDKL------GEVIVTGADDLLIKLWRARDGKL-------- 510 (1915)
Q Consensus 447 ~~tg~~d~~~~i~~~~~~~~~--~~~~l~gH~~~V~~vafspd------g~~LaTGs~Dg~I~IWd~~tg~~-------- 510 (1915)
.++|+.++++.+|........ ...++.+|.+.|++|+|+|+ +.+||+|+.||+|+|||+.++..
T Consensus 176 laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~ 255 (524)
T 2j04_B 176 FDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMC 255 (524)
T ss_dssp ------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECC
T ss_pred hccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceee
Confidence 367889999999986554432 23457789999999999996 57999999999999999987642
Q ss_pred ---EEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCC-ceEEEeecCCCCeEEE--EeccCccCCC-cEEEEEe
Q psy9598 511 ---LATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTL-APISVLVGHQGIITGV--NFCPLEVNGF-NYLASTS 583 (1915)
Q Consensus 511 ---~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg-~~~~~l~~h~~~V~sl--~fsp~~~~d~-~~L~sgs 583 (1915)
..++.+|...|++++|++++ .||+|+.||+|+|||+.++ .+...+.+|.+.|++| +|+| ++ .+|++||
T Consensus 256 ~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~----~g~~~laS~S 330 (524)
T 2j04_B 256 EKPSLTLSLADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSD----FEDTVVSTVA 330 (524)
T ss_dssp CSCSEEECCTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCT----TSCCEEEEEE
T ss_pred cCceEEEEcCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCC----CCCeEEEEec
Confidence 24788999999999999864 8999999999999999976 4566789999999999 4565 44 7999999
Q ss_pred CCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCC
Q psy9598 584 TDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHS 663 (1915)
Q Consensus 584 ~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~ 663 (1915)
.||+|+|||++++..+..+..+. ....|.+++|+|++..|++|+.|++|+|||++. ..++..+.+|.
T Consensus 331 ~D~tvklWD~~~~~~~~~~~~~~----------~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~---~~~~~~l~gH~ 397 (524)
T 2j04_B 331 VDGYFYIFNPKDIATTKTTVSRF----------RGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRA---AFAVHPLVSRE 397 (524)
T ss_dssp TTSEEEEECGGGHHHHCEEEEEC----------SCCSCCCEEEETTTTEEEEECSSSEEEEEETTC---TTCCEEEEECS
T ss_pred cCCeEEEEECCCCCccccccccc----------ccCcccceEeCCCcCeEEEeCCCCcEEEEECcc---cccceeeecCC
Confidence 99999999998876543332220 113478999999999999999999999999943 34456678999
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecC
Q psy9598 664 DKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFN 743 (1915)
Q Consensus 664 ~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~D 743 (1915)
+.|++|+|+|+|.+|++|+.||+|+|||+....+ ..... .........|.+++|+|++..+.. .
T Consensus 398 ~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~-----------~~~~~-~~~~~~~~~v~~v~~sp~g~~~~~--~-- 461 (524)
T 2j04_B 398 TTITAIGVSRLHPMVLAGSADGSLIITNAARRLL-----------HGIKN-SSATQKSLRLWKWDYSIKDDKYRI--D-- 461 (524)
T ss_dssp SCEEEEECCSSCCBCEEEETTTEEECCBSCSSTT-----------TCC-------CCCCEEEECBCCSSSCEEEE--C--
T ss_pred CceEEEEeCCCCCeEEEEECCCEEEEEechHhhc-----------ccccc-CccceeeeEEEEeccCCCCCeEEc--c--
Confidence 9999999999999999999999999999754310 00000 000112235789999999985522 2
Q ss_pred CeEEEEECC-CCceEEEeeCCCCCeEEEEEccCC---CCEEEEEecCceEEEEECCC
Q psy9598 744 FQIKIWDAF-NGDLVQVLKGHTNEVFVLESHPFD---SRVLLSAGHDGLIIIWDILS 796 (1915)
Q Consensus 744 g~I~vwD~~-tg~~i~~l~gH~~~V~sl~~sp~d---g~~LaSgs~DG~I~IWdl~s 796 (1915)
..+.+|+.. ++.++..+.+|...|++|+|+| + +.+||+|+.||.|+||++..
T Consensus 462 ~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp-~~~~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 462 SSYEVYPLTVNDVSKAKIDAHGINITCTKWNE-TSAGGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp CCCCCCC-------------CCCSCCCEEECC-STTTTTEEEEECTTSEEEEEECSC
T ss_pred CCceecccccCCcceeeecCCCceEEEEECCC-CCCccHHHHhhccCceEEEEEccc
Confidence 234444443 5778889999999999999999 6 45999999999999999864
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-31 Score=329.33 Aligned_cols=311 Identities=13% Similarity=0.120 Sum_probs=246.9
Q ss_pred EEeCCCCCEEEEEEeCC----CCEEEEEeCCCcEEEEECCCCceEEEeec-----CCCCeEEEEeccCccCCCcEEEEEe
Q psy9598 513 TLRGCSGEISDIAIDNR----NILLAAGTVDKTIRIWNLQTLAPISVLVG-----HQGIITGVNFCPLEVNGFNYLASTS 583 (1915)
Q Consensus 513 ~l~gH~~~I~~Lafspd----g~~LaSgs~DgtIrVWDl~tg~~~~~l~~-----h~~~V~sl~fsp~~~~d~~~L~sgs 583 (1915)
...+|.+.|++|+|+|+ ...+++++.++.|+|||+.++..+..+.. |...|++++|+|....++.+|++|+
T Consensus 13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~ 92 (366)
T 3k26_A 13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAG 92 (366)
T ss_dssp EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEE
T ss_pred eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEec
Confidence 34589999999999984 45666677778999999998888777764 5578999999997533368999999
Q ss_pred CCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECC-CCcEEEEEeCCCeEEEEEecCCCCCceeEEe---
Q psy9598 584 TDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSP-GGLFLATGSGDHHVRVYKMDGVDSPLGILEV--- 659 (1915)
Q Consensus 584 ~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fsp-dg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l--- 659 (1915)
.||.|++||+.++..+.. +..|...|.+++|+| ++.+|++|+.||.|++||+.. ...+..+
T Consensus 93 ~dg~i~v~d~~~~~~~~~------------~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~---~~~~~~~~~~ 157 (366)
T 3k26_A 93 SRGIIRIINPITMQCIKH------------YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT---DTLVAIFGGV 157 (366)
T ss_dssp TTCEEEEECTTTCCEEEE------------EESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTT---TEEEEEECST
T ss_pred CCCEEEEEEchhceEeee------------ecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeec---CeEEEEeccc
Confidence 999999999987754332 235678999999999 899999999999999999943 3455555
Q ss_pred ccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccC------------CCCccccccccccccEEEE
Q psy9598 660 EEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCL------------PHTKETSDETNKKIKVTMV 727 (1915)
Q Consensus 660 ~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~V~~v 727 (1915)
.+|...|.+++|+|++.+|++|+.||.|++||+.++............. ...........+...|.++
T Consensus 158 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 237 (366)
T 3k26_A 158 EGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCV 237 (366)
T ss_dssp TSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEE
T ss_pred ccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEE
Confidence 6899999999999999999999999999999998765322110000000 0000111223378889999
Q ss_pred EECCCCCEEEEEEecCCeEEEEECCCCce--------------EEEeeCCCCCeEEEEEccCC--CCEEEEEecCceEEE
Q psy9598 728 AWDASDRWVITAINFNFQIKIWDAFNGDL--------------VQVLKGHTNEVFVLESHPFD--SRVLLSAGHDGLIII 791 (1915)
Q Consensus 728 a~spdg~~L~t~s~~Dg~I~vwD~~tg~~--------------i~~l~gH~~~V~sl~~sp~d--g~~LaSgs~DG~I~I 791 (1915)
+|+ +.+|++++. ||.|++||+.++.. +..+.+|...|++++|+| + +.+|++|+.||.|+|
T Consensus 238 ~~~--~~~l~~~~~-d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~~~l~~~~~dg~i~v 313 (366)
T 3k26_A 238 RWL--GDLILSKSC-ENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSM-DFWQKMLALGNQVGKLYV 313 (366)
T ss_dssp EEE--TTEEEEECS-SSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEE-CTTSSEEEEECTTSCEEE
T ss_pred EEc--CCEEEEEec-CCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcC-CCCCcEEEEEecCCcEEE
Confidence 998 778998888 99999999987744 888899999999999999 7 999999999999999
Q ss_pred EECCCCccccceeeeeeecCC-CCcceEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q psy9598 792 WDILSSKQRGYKWFHNIVEGQ-GEGALFDGKWSPDGTTCALTDSYGHLLVYGLG 844 (1915)
Q Consensus 792 Wdl~s~~~~~~~~~~~~~~~~-~~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl~ 844 (1915)
||+.++.. .......+.++ +.+.|.+++|+|+|.+|++++.||.|+||++.
T Consensus 314 wd~~~~~~--~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 314 WDLEVEDP--HKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp EECCSSSG--GGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred EECCCCCC--ccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 99999876 33222222222 25899999999999999999999999999985
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-31 Score=359.38 Aligned_cols=297 Identities=21% Similarity=0.268 Sum_probs=241.0
Q ss_pred EEEEeCCCCCEEEEEEeCCC-CEEEEEeCCCcEEEEECCC-----CceEEEeecCCCCeEEEEeccCccCCCcEEEEEeC
Q psy9598 511 LATLRGCSGEISDIAIDNRN-ILLAAGTVDKTIRIWNLQT-----LAPISVLVGHQGIITGVNFCPLEVNGFNYLASTST 584 (1915)
Q Consensus 511 ~~~l~gH~~~I~~Lafspdg-~~LaSgs~DgtIrVWDl~t-----g~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~ 584 (1915)
...+.+|.+.|++|+|++++ .+|+|||.|++|+||++.+ +.....+.+|...|++++|+|+ +.+|++|+.
T Consensus 375 ~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~----g~~l~sgs~ 450 (694)
T 3dm0_A 375 KGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSD----GQFALSGSW 450 (694)
T ss_dssp EEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTT----SSEEEEEET
T ss_pred hhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCC----CCEEEEEeC
Confidence 44688999999999999874 7999999999999999975 3456788999999999999994 589999999
Q ss_pred CCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCC
Q psy9598 585 DGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSD 664 (1915)
Q Consensus 585 DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~ 664 (1915)
||+|++||+.++..... +.+|...|.+++|+|++.+|++|+.|++|+|||+.+...........+|..
T Consensus 451 Dg~v~vwd~~~~~~~~~------------~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~ 518 (694)
T 3dm0_A 451 DGELRLWDLAAGVSTRR------------FVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRD 518 (694)
T ss_dssp TSEEEEEETTTTEEEEE------------EECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSS
T ss_pred CCcEEEEECCCCcceeE------------EeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCC
Confidence 99999999988754322 336778999999999999999999999999999742211111111257899
Q ss_pred CeeEEEEcCCC--CEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEec
Q psy9598 665 KVDSIQWSHSH--LRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINF 742 (1915)
Q Consensus 665 ~V~sl~fspdg--~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~ 742 (1915)
.|.+++|+|++ ..|++|+.||+|+|||+.+...... ..+|...|++++|+|++.+|++++.
T Consensus 519 ~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~----------------~~~h~~~v~~v~~spdg~~l~sg~~- 581 (694)
T 3dm0_A 519 WVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRST----------------LAGHTGYVSTVAVSPDGSLCASGGK- 581 (694)
T ss_dssp CEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEE----------------ECCCSSCEEEEEECTTSSEEEEEET-
T ss_pred cEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEE----------------EcCCCCCEEEEEEeCCCCEEEEEeC-
Confidence 99999999987 5899999999999999988764432 2347788999999999999999998
Q ss_pred CCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecC-----------
Q psy9598 743 NFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEG----------- 811 (1915)
Q Consensus 743 Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~----------- 811 (1915)
||.|+|||+.+++++..+..+ ..|.+++|+| ++.+|++++ |+.|+|||+.++.. +..+......
T Consensus 582 Dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~sp-~~~~l~~~~-~~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 656 (694)
T 3dm0_A 582 DGVVLLWDLAEGKKLYSLEAN-SVIHALCFSP-NRYWLCAAT-EHGIKIWDLESKSI--VEDLKVDLKAEAEKADNSGPA 656 (694)
T ss_dssp TSBCEEEETTTTEEEECCBCS-SCEEEEEECS-SSSEEEEEE-TTEEEEEETTTTEE--EEEECCCCC------------
T ss_pred CCeEEEEECCCCceEEEecCC-CcEEEEEEcC-CCcEEEEEc-CCCEEEEECCCCCC--hhhhccccccccccccccccc
Confidence 999999999999999888654 5799999999 877776665 66799999998876 4443211100
Q ss_pred ---CCCcceEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q psy9598 812 ---QGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGG 845 (1915)
Q Consensus 812 ---~~~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl~s 845 (1915)
.+...+++++|||+|.+|++|+.||.|+||++..
T Consensus 657 ~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~~ 693 (694)
T 3dm0_A 657 ATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIGR 693 (694)
T ss_dssp ----CCCCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred cCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEeccC
Confidence 0112478899999999999999999999999863
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-31 Score=336.28 Aligned_cols=329 Identities=14% Similarity=0.151 Sum_probs=257.0
Q ss_pred CCcEEEEECCCCcEEEEEeCCCCCEEEEEEeC-CCCEEEEEeCCCcEEEEECCCCceEEEee-------------cCCCC
Q psy9598 497 DLLIKLWRARDGKLLATLRGCSGEISDIAIDN-RNILLAAGTVDKTIRIWNLQTLAPISVLV-------------GHQGI 562 (1915)
Q Consensus 497 Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafsp-dg~~LaSgs~DgtIrVWDl~tg~~~~~l~-------------~h~~~ 562 (1915)
++.++||++.++.....+.+|.+.|++|+|+| ++.+||+|+.||.|+|||+.++.....+. +|...
T Consensus 22 ~~~~~v~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (408)
T 4a11_B 22 ESTRRVLGLELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYS 101 (408)
T ss_dssp HHHHHHHTEEECTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSC
T ss_pred cCcceeeccccCcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCc
Confidence 45688899888888899999999999999999 99999999999999999999876654443 59999
Q ss_pred eEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCC---CcEEEEEeCC
Q psy9598 563 ITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPG---GLFLATGSGD 639 (1915)
Q Consensus 563 V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspd---g~~Lasgs~D 639 (1915)
|++++|+|. ++.+|++++.||.|++||+.++....... +...+.++.|++. +.+|++|+.+
T Consensus 102 v~~~~~~~~---~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (408)
T 4a11_B 102 VETVQWYPH---DTGMFTSSSFDKTLKVWDTNTLQTADVFN-------------FEETVYSHHMSPVSTKHCLVAVGTRG 165 (408)
T ss_dssp EEEEEECTT---CTTCEEEEETTSEEEEEETTTTEEEEEEE-------------CSSCEEEEEECSSCSSCCEEEEEESS
T ss_pred EEEEEEccC---CCcEEEEEeCCCeEEEeeCCCCccceecc-------------CCCceeeeEeecCCCCCcEEEEEcCC
Confidence 999999993 35799999999999999999876443332 2367889999985 4599999999
Q ss_pred CeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCC-EEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccc
Q psy9598 640 HHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHL-RFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDET 718 (1915)
Q Consensus 640 g~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~-~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~ 718 (1915)
|.|++||+.. ...+..+.+|...|.+++|+|++. +|++|+.||.|++||+++........................
T Consensus 166 ~~v~~~d~~~---~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (408)
T 4a11_B 166 PKVQLCDLKS---GSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANT 242 (408)
T ss_dssp SSEEEEESSS---SCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSC
T ss_pred CeEEEEeCCC---cceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccc
Confidence 9999999943 345667889999999999999998 589999999999999987652222211111111122223345
Q ss_pred cccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCC----CeEEEEEccCCCCEEEEEecCceEEEEEC
Q psy9598 719 NKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTN----EVFVLESHPFDSRVLLSAGHDGLIIIWDI 794 (1915)
Q Consensus 719 ~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~----~V~sl~~sp~dg~~LaSgs~DG~I~IWdl 794 (1915)
.+...|.+++|+|++.+|++++. ||.|++||+.++..+..+.++.. ....+.+....+..+++++.||.|++||+
T Consensus 243 ~~~~~v~~~~~~~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~ 321 (408)
T 4a11_B 243 AHNGKVNGLCFTSDGLHLLTVGT-DNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTV 321 (408)
T ss_dssp SCSSCEEEEEECTTSSEEEEEET-TSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEET
T ss_pred cccCceeEEEEcCCCCEEEEecC-CCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEEC
Confidence 68889999999999999999998 99999999999887665543321 11112222224566778888999999999
Q ss_pred CCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcccccC
Q psy9598 795 LSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGGFKRPQNI 852 (1915)
Q Consensus 795 ~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl~s~~~~~~l 852 (1915)
.++.. +..+. .|.+.|.+++|+|+|.+|++++.||.|+||++.+++.+...
T Consensus 322 ~~~~~--~~~~~-----~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~ 372 (408)
T 4a11_B 322 YSGEQ--ITMLK-----GHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDD 372 (408)
T ss_dssp TTCCE--EEEEC-----CCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC-------
T ss_pred cCCcc--eeeec-----cCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCC
Confidence 99887 65554 56789999999999999999999999999999998776544
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-31 Score=319.61 Aligned_cols=257 Identities=22% Similarity=0.322 Sum_probs=214.7
Q ss_pred EEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCC--CcEEEEEeCCCCCEEEEEEeCC--CCEEEEEeCCCcEEEE
Q psy9598 470 YVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARD--GKLLATLRGCSGEISDIAIDNR--NILLAAGTVDKTIRIW 545 (1915)
Q Consensus 470 ~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~t--g~~~~~l~gH~~~I~~Lafspd--g~~LaSgs~DgtIrVW 545 (1915)
..+.||.+.|++++|+|+|++||||+.|++|+||++.+ +.++.++.+|.+.|++|+|+++ +.+||||+.|++|+||
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW 82 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW 82 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence 46789999999999999999999999999999999974 4678899999999999999864 8999999999999999
Q ss_pred ECCCCc--eEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEE
Q psy9598 546 NLQTLA--PISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILC 623 (1915)
Q Consensus 546 Dl~tg~--~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~ 623 (1915)
|+.++. .+..+.+|...|.+++|+|.. .+.+|++|+.||+|++||+..+..... ..+..|...|.+
T Consensus 83 d~~~~~~~~~~~~~~h~~~v~~v~~~p~~--~g~~l~s~s~d~~v~~wd~~~~~~~~~----------~~~~~h~~~v~~ 150 (297)
T 2pm7_B 83 KEENGRWSQIAVHAVHSASVNSVQWAPHE--YGPMLLVASSDGKVSVVEFKENGTTSP----------IIIDAHAIGVNS 150 (297)
T ss_dssp EBSSSCBCCCEEECCCSSCEEEEEECCGG--GCSEEEEEETTSEEEEEEBCSSSCBCC----------EEEECCSSCEEE
T ss_pred EcCCCceEEEEEeecCCCceeEEEeCcCC--CCcEEEEEECCCcEEEEEecCCCceee----------eeeecccCccce
Confidence 999874 567788999999999999952 257999999999999999987532111 123367788999
Q ss_pred EEECCC-------------CcEEEEEeCCCeEEEEEecCCCC-CceeEEeccCCCCeeEEEEcCCC---CEEEEEeCCCc
Q psy9598 624 SSFSPG-------------GLFLATGSGDHHVRVYKMDGVDS-PLGILEVEEHSDKVDSIQWSHSH---LRFVSGSRDGT 686 (1915)
Q Consensus 624 l~fspd-------------g~~Lasgs~Dg~I~IwDl~~~~~-~~~i~~l~~h~~~V~sl~fspdg---~~L~sgs~DG~ 686 (1915)
++|+|+ +.+|++|+.|+.|+|||+..... ......+.+|...|.+|+|+|++ .+|++|+.||+
T Consensus 151 ~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~ 230 (297)
T 2pm7_B 151 ASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRT 230 (297)
T ss_dssp EEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSC
T ss_pred EeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCc
Confidence 999997 57999999999999999964332 12456788999999999999985 79999999999
Q ss_pred EEEEEccCCc--eEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECC
Q psy9598 687 ALIWYYKCSQ--WRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAF 752 (1915)
Q Consensus 687 I~IWDl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~ 752 (1915)
|+|||+.... +.... .....+...|.+++|+|+|.+|++++. |+.|+||+..
T Consensus 231 v~iWd~~~~~~~~~~~~-------------~~~~~~~~~v~~~~~s~~g~~las~~~-D~~v~lw~~~ 284 (297)
T 2pm7_B 231 CIIWTQDNEQGPWKKTL-------------LKEEKFPDVLWRASWSLSGNVLALSGG-DNKVTLWKEN 284 (297)
T ss_dssp EEEEEESSTTSCCEEEE-------------SSSSCCSSCEEEEEECSSSCCEEEEET-TSCEEEEEEC
T ss_pred EEEEEeCCCCCccceee-------------eecccCCCcEEEEEECCCCCEEEEEcC-CCcEEEEEEC
Confidence 9999987643 11100 011235678999999999999999998 9999999975
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-31 Score=333.16 Aligned_cols=326 Identities=13% Similarity=0.116 Sum_probs=259.7
Q ss_pred cCccccccCCCeEEEecccCCceeeeEEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEE
Q psy9598 444 RSREYSGPLSRSLMISSHKYSNLRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISD 523 (1915)
Q Consensus 444 ~~r~~tg~~d~~~~i~~~~~~~~~~~~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~ 523 (1915)
....++|+.++.+.+|+.... .....+.+| ..+.+.+|+++|.+||+|+.||.|+|||+.++.++..+.+|.+.|++
T Consensus 68 g~~l~~~~~d~~v~i~d~~~~--~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~ 144 (420)
T 3vl1_A 68 GSHLYKARLDGHDFLFNTIIR--DGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITK 144 (420)
T ss_dssp ETTEEEEEETTEEEEEECCSE--ETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEE
T ss_pred CCeEEEEEcCCcEEEEEeccc--ceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEE
Confidence 345677888999999975433 333345566 55666678999999999999999999999999999998999999999
Q ss_pred EEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCcccccee
Q psy9598 524 IAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTV 603 (1915)
Q Consensus 524 Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~ 603 (1915)
|+|+|++.+|++|+.|++|+|||+.++..+..+.+|.+.|++++|+|+ +.+|++|+.||+|++||+.++..+..+.
T Consensus 145 ~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~----~~~l~s~~~d~~v~iwd~~~~~~~~~~~ 220 (420)
T 3vl1_A 145 LKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDR----GRNVLSASLDGTIRLWECGTGTTIHTFN 220 (420)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETT----TTEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred EEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCC----CCEEEEEcCCCcEEEeECCCCceeEEee
Confidence 999999999999999999999999999999999999999999999994 4899999999999999999886655443
Q ss_pred ccCccc----c--------ccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEE-eccCCCCeeEEE
Q psy9598 604 FHEPVM----F--------NERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILE-VEEHSDKVDSIQ 670 (1915)
Q Consensus 604 ~~~~~~----~--------~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~-l~~h~~~V~sl~ 670 (1915)
.+.... . ......+...+.+++|+|+|.+|++|+.||.|++||+... ..+.. ...|...|.+++
T Consensus 221 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~~v~~~~ 297 (420)
T 3vl1_A 221 RKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSK---EQTIQLPSKFTCSCNSLT 297 (420)
T ss_dssp BTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTC---CEEEEECCTTSSCEEEEE
T ss_pred cCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCC---ceeEEcccccCCCceeEE
Confidence 321000 0 0001123356677778999999999999999999999532 33333 356889999999
Q ss_pred EcCCCC-EEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEE
Q psy9598 671 WSHSHL-RFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIW 749 (1915)
Q Consensus 671 fspdg~-~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vw 749 (1915)
|+|++. +|++|+.||.|++||+.++..... .....+...|.++.| +++.+|++++. ||.|++|
T Consensus 298 ~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~--------------~~~~~~~~~v~~~~~-~~~~~l~s~~~-d~~v~iw 361 (420)
T 3vl1_A 298 VDGNNANYIYAGYENGMLAQWDLRSPECPVG--------------EFLINEGTPINNVYF-AAGALFVSSGF-DTSIKLD 361 (420)
T ss_dssp ECSSCTTEEEEEETTSEEEEEETTCTTSCSE--------------EEEESTTSCEEEEEE-ETTEEEEEETT-TEEEEEE
T ss_pred EeCCCCCEEEEEeCCCeEEEEEcCCCcCchh--------------hhhccCCCCceEEEe-CCCCEEEEecC-CccEEEE
Confidence 999999 999999999999999987652110 001124567888865 47788888887 9999999
Q ss_pred ECCCC---------ceEEEeeCCCCCeEEEEEccCCCC---EEEEEecCceEEEEECCC
Q psy9598 750 DAFNG---------DLVQVLKGHTNEVFVLESHPFDSR---VLLSAGHDGLIIIWDILS 796 (1915)
Q Consensus 750 D~~tg---------~~i~~l~gH~~~V~sl~~sp~dg~---~LaSgs~DG~I~IWdl~s 796 (1915)
++... .....+.+|.+.|.+++|+| ++. .|+++|.+|.+.+|++..
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 362 IISDPESERPAIEFETPTFLVSNDDAVSQFCYVS-DDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp EECCTTCCSCEECTTSCEEECCSSCCCCEEEEEC-CSSSSCEEEEEETTTEEEEEESCC
T ss_pred eccCCCCCccceeccCccEEccCCcceEEEEEcc-CCCCcceEEEEcCCceEEEEeccC
Confidence 98763 23345678999999999999 777 788888899999999864
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-30 Score=318.97 Aligned_cols=294 Identities=13% Similarity=0.104 Sum_probs=243.8
Q ss_pred eEEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCc---EEEEEeCCCCCEEEEEEeCCCC-EEEEEeCCCcEEE
Q psy9598 469 HYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGK---LLATLRGCSGEISDIAIDNRNI-LLAAGTVDKTIRI 544 (1915)
Q Consensus 469 ~~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~---~~~~l~gH~~~I~~Lafspdg~-~LaSgs~DgtIrV 544 (1915)
.....+|.+.|+|++|+|++.+|++|+.||.|+||++.++. ....+.+|...|++++|++++. +|++|+.||.|++
T Consensus 4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~ 83 (342)
T 1yfq_A 4 VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILK 83 (342)
T ss_dssp EECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEE
T ss_pred eecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEE
Confidence 34456999999999999999999999999999999998887 3455668999999999999999 9999999999999
Q ss_pred EEC-CCCceEEEeec--CCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEeccc---------CccccceeccCcccccc
Q psy9598 545 WNL-QTLAPISVLVG--HQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKL---------DIDISKTVFHEPVMFNE 612 (1915)
Q Consensus 545 WDl-~tg~~~~~l~~--h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~---------~~~~~~~~~~~~~~~~~ 612 (1915)
||+ .++.. ..+.+ |...|++++|+| . .+|++++.||.|++||+.+ +..+..+
T Consensus 84 wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~----~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~---------- 147 (342)
T 1yfq_A 84 VDLIGSPSF-QALTNNEANLGICRICKYG-D----DKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNT---------- 147 (342)
T ss_dssp ECSSSSSSE-EECBSCCCCSCEEEEEEET-T----TEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSS----------
T ss_pred EEeccCCce-EeccccCCCCceEEEEeCC-C----CEEEEEcCCCeEEEEcccccccccccccCCeeeEE----------
Confidence 999 87754 77888 999999999998 5 7999999999999999986 3322211
Q ss_pred ccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcC-CCCEEEEEeCCCcEEEEE
Q psy9598 613 RIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSH-SHLRFVSGSRDGTALIWY 691 (1915)
Q Consensus 613 ~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fsp-dg~~L~sgs~DG~I~IWD 691 (1915)
.+...|.+++|++++ |++|+.+|.|++||+..............|...|.+++|+| ++.+|++|+.||.|+||+
T Consensus 148 ---~~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~ 222 (342)
T 1yfq_A 148 ---KVKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEF 222 (342)
T ss_dssp ---SSCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEE
T ss_pred ---eeCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEE
Confidence 255789999999987 99999999999999964122223334567889999999999 999999999999999999
Q ss_pred ccCC------ceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCC-C
Q psy9598 692 YKCS------QWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGH-T 764 (1915)
Q Consensus 692 l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH-~ 764 (1915)
+... ........ .........+...|.+++|+|++.+|++++. ||.|++||+.+++++..+.+| .
T Consensus 223 ~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~h~ 294 (342)
T 1yfq_A 223 FDDQGDDYNSSKRFAFRC-------HRLNLKDTNLAYPVNSIEFSPRHKFLYTAGS-DGIISCWNLQTRKKIKNFAKFNE 294 (342)
T ss_dssp CCTTCCSTTCTTCEEEEC-------CCCCTTCCSSCCCEEEEEECTTTCCEEEEET-TSCEEEEETTTTEEEEECCCCSS
T ss_pred EcCCCcccccccceeeec-------ccccccccccceeEEEEEEcCCCCEEEEecC-CceEEEEcCccHhHhhhhhcccC
Confidence 9875 32211110 0000011235568999999999999999998 999999999999999999998 9
Q ss_pred CCeEEEEEccCCCCEEEEEecCce-EEEEEC
Q psy9598 765 NEVFVLESHPFDSRVLLSAGHDGL-IIIWDI 794 (1915)
Q Consensus 765 ~~V~sl~~sp~dg~~LaSgs~DG~-I~IWdl 794 (1915)
..|++++ | ++.+|++|+.||+ .+.|..
T Consensus 295 ~~v~~~~--~-~~~~l~s~s~Dg~~~~~~~~ 322 (342)
T 1yfq_A 295 DSVVKIA--C-SDNILCLATSDDTFKTNAAI 322 (342)
T ss_dssp SEEEEEE--E-CSSEEEEEEECTHHHHCSSS
T ss_pred CCceEec--C-CCCeEEEEecCCcccccccc
Confidence 9999999 7 8999999999998 555553
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-31 Score=334.41 Aligned_cols=281 Identities=22% Similarity=0.427 Sum_probs=242.3
Q ss_pred EecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCC
Q psy9598 471 VNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTL 550 (1915)
Q Consensus 471 ~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg 550 (1915)
...+|...|+|++| ++.+|++|+.||.|+|||+.+++.+..+.+|.+.|++++| ++.+|++|+.||+|+|||+.++
T Consensus 128 ~~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~ 203 (435)
T 1p22_A 128 CRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTG 203 (435)
T ss_dssp CCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSC
T ss_pred cccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCC
Confidence 34578889999988 6999999999999999999999999999999999999999 7889999999999999999999
Q ss_pred ceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCC
Q psy9598 551 APISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGG 630 (1915)
Q Consensus 551 ~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg 630 (1915)
..+..+.+|...|.+++|++ .+|++|+.||+|++||+.++..... ...+.+|...|.+++| ++
T Consensus 204 ~~~~~~~~h~~~v~~l~~~~------~~l~s~s~dg~i~vwd~~~~~~~~~---------~~~~~~~~~~v~~~~~--~~ 266 (435)
T 1p22_A 204 EMLNTLIHHCEAVLHLRFNN------GMMVTCSKDRSIAVWDMASPTDITL---------RRVLVGHRAAVNVVDF--DD 266 (435)
T ss_dssp CEEEEECCCCSCEEEEECCT------TEEEEEETTSCEEEEECSSSSCCEE---------EEEECCCSSCEEEEEE--ET
T ss_pred cEEEEEcCCCCcEEEEEEcC------CEEEEeeCCCcEEEEeCCCCCCcee---------eeEecCCCCcEEEEEe--CC
Confidence 99999999999999999976 6999999999999999987754321 1223467789999999 78
Q ss_pred cEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCC
Q psy9598 631 LFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPH 710 (1915)
Q Consensus 631 ~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~ 710 (1915)
.+|++|+.||.|++||+. ....+..+.+|...|.+++|+ +.+|++|+.||.|++||+.++.....
T Consensus 267 ~~l~s~~~dg~i~vwd~~---~~~~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~---------- 331 (435)
T 1p22_A 267 KYIVSASGDRTIKVWNTS---TCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRV---------- 331 (435)
T ss_dssp TEEEEEETTSEEEEEETT---TCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEE----------
T ss_pred CEEEEEeCCCeEEEEECC---cCcEEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEE----------
Confidence 899999999999999994 446677888999999999994 67999999999999999998875432
Q ss_pred CccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCc---------eEEEeeCCCCCeEEEEEccCCCCEEE
Q psy9598 711 TKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGD---------LVQVLKGHTNEVFVLESHPFDSRVLL 781 (1915)
Q Consensus 711 ~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~---------~i~~l~gH~~~V~sl~~sp~dg~~La 781 (1915)
...|...|.+++| ++.+|++++. ||.|++||+.++. ++..+.+|.+.|++++| ++.+|+
T Consensus 332 ------~~~h~~~v~~~~~--~~~~l~sg~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~ 399 (435)
T 1p22_A 332 ------LEGHEELVRCIRF--DNKRIVSGAY-DGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF---DEFQIV 399 (435)
T ss_dssp ------ECCCSSCEEEEEC--CSSEEEEEET-TSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE---CSSCEE
T ss_pred ------EeCCcCcEEEEEe--cCCEEEEEeC-CCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe---CCCEEE
Confidence 2246778999998 7889999988 9999999987766 89999999999999999 457899
Q ss_pred EEecCceEEEEECCCCcc
Q psy9598 782 SAGHDGLIIIWDILSSKQ 799 (1915)
Q Consensus 782 Sgs~DG~I~IWdl~s~~~ 799 (1915)
+|+.||+|+|||+.+...
T Consensus 400 s~s~Dg~i~iwd~~~~~~ 417 (435)
T 1p22_A 400 SSSHDDTILIWDFLNDPA 417 (435)
T ss_dssp ECCSSSEEEEEC------
T ss_pred EEeCCCEEEEEECCCCCC
Confidence 999999999999987665
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.98 E-value=7.2e-31 Score=322.46 Aligned_cols=302 Identities=16% Similarity=0.212 Sum_probs=238.4
Q ss_pred EEEEeCCCCCEEEEEEeCCCCEE-EEEeC---CCcEEEEECCCCceEEEe-ecCCCCeEEEEeccCccCCCcEEEEEeCC
Q psy9598 511 LATLRGCSGEISDIAIDNRNILL-AAGTV---DKTIRIWNLQTLAPISVL-VGHQGIITGVNFCPLEVNGFNYLASTSTD 585 (1915)
Q Consensus 511 ~~~l~gH~~~I~~Lafspdg~~L-aSgs~---DgtIrVWDl~tg~~~~~l-~~h~~~V~sl~fsp~~~~d~~~L~sgs~D 585 (1915)
...+.+|...|++|+|+|++..| ++|+. |+.|+|||+.++...... .+|...|++++|+|.. .++.+|++|+.|
T Consensus 11 ~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~l~~~~~d 89 (357)
T 3i2n_A 11 AHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATS-LQQRYLATGDFG 89 (357)
T ss_dssp EEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCC-TTTCCEEEEETT
T ss_pred hhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCC-CCCceEEEecCC
Confidence 34567899999999999998655 56665 899999999998876543 3799999999999952 125899999999
Q ss_pred CeEEEEecccCc-cccceeccCccccccccCCCCCceEEEE------ECCCCcEEEEEeCCCeEEEEEecCCCCCceeEE
Q psy9598 586 GCIGFWKYKLDI-DISKTVFHEPVMFNERIRPGNAHILCSS------FSPGGLFLATGSGDHHVRVYKMDGVDSPLGILE 658 (1915)
Q Consensus 586 gtI~iWDl~~~~-~~~~~~~~~~~~~~~~~~~~~~~V~~l~------fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~ 658 (1915)
|.|++||+.++. .+ ..+..|...|.++. |++++.+|++|+.||.|++||+..... .+..
T Consensus 90 g~i~iwd~~~~~~~~------------~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~--~~~~ 155 (357)
T 3i2n_A 90 GNLHIWNLEAPEMPV------------YSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDD--PVAN 155 (357)
T ss_dssp SCEEEECTTSCSSCS------------EEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSS--CSEE
T ss_pred CeEEEEeCCCCCccE------------EEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCC--ccee
Confidence 999999998775 22 12335778899995 578999999999999999999954332 3444
Q ss_pred eccCCC----CeeEEE----EcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEEC
Q psy9598 659 VEEHSD----KVDSIQ----WSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWD 730 (1915)
Q Consensus 659 l~~h~~----~V~sl~----fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~s 730 (1915)
+..|.+ .|.+++ |++++.+|++|+.||.|++||+.++..... ..+...|.+++|+
T Consensus 156 ~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-----------------~~~~~~v~~~~~~ 218 (357)
T 3i2n_A 156 MEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-----------------TNIKNGVCSLEFD 218 (357)
T ss_dssp ECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-----------------EECSSCEEEEEES
T ss_pred ccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-----------------cCCCCceEEEEcC
Confidence 544444 899998 788999999999999999999998774321 2356789999999
Q ss_pred C---CCCEEEEEEecCCeEEEEECCCCceEEEee-----CCCCCeEEEEEccCCCC-EEEEEecCceEEEEECCCCcccc
Q psy9598 731 A---SDRWVITAINFNFQIKIWDAFNGDLVQVLK-----GHTNEVFVLESHPFDSR-VLLSAGHDGLIIIWDILSSKQRG 801 (1915)
Q Consensus 731 p---dg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~-----gH~~~V~sl~~sp~dg~-~LaSgs~DG~I~IWdl~s~~~~~ 801 (1915)
| ++.+|++++. ||.|++||+.++..+..+. +|...|++++|+| ++. +|++|+.||.|+|||+..+....
T Consensus 219 ~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~ 296 (357)
T 3i2n_A 219 RKDISMNKLVATSL-EGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLP-QNRELFLTAGGAGGLHLWKYEYPIQRS 296 (357)
T ss_dssp CSSSSCCEEEEEES-TTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEET-TEEEEEEEEETTSEEEEEEEECCSCC-
T ss_pred CCCCCCCEEEEECC-CCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECC-CCCcEEEEEeCCCcEEEeecCCCcccc
Confidence 9 9999999988 9999999998876655444 9999999999999 777 89999999999999998754410
Q ss_pred --------------ceeeeeeecCCCCcceEEEEEcCCCCEEE-EEeCCCeEEEEeCCCCcc
Q psy9598 802 --------------YKWFHNIVEGQGEGALFDGKWSPDGTTCA-LTDSYGHLLVYGLGGFKR 848 (1915)
Q Consensus 802 --------------~~~~~~~~~~~~~~~V~~vafSpdg~~La-sg~~dG~I~Iwdl~s~~~ 848 (1915)
...+. ....|.+.|.+++|+|+|.+|+ +++.||.|+||++.+...
T Consensus 297 ~~~~~g~~~~~~~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~~ 356 (357)
T 3i2n_A 297 KKDSEGIEMGVAGSVSLLQ--NVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLNK 356 (357)
T ss_dssp -CCTTSCCCCCCCEEEEEE--EEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC---
T ss_pred cccCCCCccccccccceee--ccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCccc
Confidence 01111 1124568999999999999998 799999999999987543
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=99.98 E-value=2.3e-31 Score=323.83 Aligned_cols=258 Identities=21% Similarity=0.302 Sum_probs=208.7
Q ss_pred EecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCc--EEEEEeCCCCCEEEEEEeC--CCCEEEEEeCCCcEEEEE
Q psy9598 471 VNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGK--LLATLRGCSGEISDIAIDN--RNILLAAGTVDKTIRIWN 546 (1915)
Q Consensus 471 ~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~--~~~~l~gH~~~I~~Lafsp--dg~~LaSgs~DgtIrVWD 546 (1915)
.+.||.+.|++|+|+|+|++||||+.|++|+|||+.++. ++.++.+|.+.|++|+|++ ++.+|+||+.|++|+|||
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd 87 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR 87 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence 567999999999999999999999999999999998875 5678999999999999986 489999999999999999
Q ss_pred CCCC--ceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEE
Q psy9598 547 LQTL--APISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCS 624 (1915)
Q Consensus 547 l~tg--~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l 624 (1915)
+.++ ..+..+.+|...|++++|+|.. .+.+|++|+.||+|++||+..+.... ....+..|...|.++
T Consensus 88 ~~~~~~~~~~~~~~h~~~V~~v~~~p~~--~g~~lasgs~D~~i~lwd~~~~~~~~---------~~~~~~~h~~~v~~~ 156 (316)
T 3bg1_A 88 EENGTWEKSHEHAGHDSSVNSVCWAPHD--YGLILACGSSDGAISLLTYTGEGQWE---------VKKINNAHTIGCNAV 156 (316)
T ss_dssp CSSSCCCEEEEECCCSSCCCEEEECCTT--TCSCEEEECSSSCEEEEEECSSSCEE---------ECCBTTSSSSCBCCC
T ss_pred CCCCcceEEEEccCCCCceEEEEECCCC--CCcEEEEEcCCCCEEEEecCCCCCcc---------eeeeeccccCCcceE
Confidence 9987 4677888999999999999953 35899999999999999997653110 011233567788999
Q ss_pred EECCC-----------------CcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCC----CEEEEEeC
Q psy9598 625 SFSPG-----------------GLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSH----LRFVSGSR 683 (1915)
Q Consensus 625 ~fspd-----------------g~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg----~~L~sgs~ 683 (1915)
+|+|+ +.+|++|+.|+.|+|||+........+..+.+|...|.+++|+|++ .+|++|+.
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~ 236 (316)
T 3bg1_A 157 SWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQ 236 (316)
T ss_dssp EECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEET
T ss_pred EEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcC
Confidence 99997 4689999999999999995333334566788999999999999986 78999999
Q ss_pred CCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECC
Q psy9598 684 DGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAF 752 (1915)
Q Consensus 684 DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~ 752 (1915)
||+|+||++.+..... ........+...|.+++|+|++.+|++++. |+.|+||+..
T Consensus 237 D~~v~iw~~~~~~~~~------------~~~~~~~~~~~~v~~v~~sp~g~~las~~~-D~~v~lw~~~ 292 (316)
T 3bg1_A 237 DGRVFIWTCDDASSNT------------WSPKLLHKFNDVVWHVSWSITANILAVSGG-DNKVTLWKES 292 (316)
T ss_dssp TCEEEEEECSSTTCCC------------CBCCEEEECSSCEEEEEECTTTCCEEEEES-SSCEEEEEEC
T ss_pred CCeEEEEEccCccccc------------hhhhhhhcCCCcEEEEEEcCCCCEEEEEcC-CCeEEEEEEC
Confidence 9999999987632000 000011235678999999999999999998 9999999975
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.98 E-value=9e-31 Score=324.13 Aligned_cols=264 Identities=22% Similarity=0.300 Sum_probs=223.1
Q ss_pred eEEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECC--CCcEEEEEeCCCCCEEEEEEeCC--CCEEEEEeCCCcEEE
Q psy9598 469 HYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRAR--DGKLLATLRGCSGEISDIAIDNR--NILLAAGTVDKTIRI 544 (1915)
Q Consensus 469 ~~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~--tg~~~~~l~gH~~~I~~Lafspd--g~~LaSgs~DgtIrV 544 (1915)
...+.||.+.|+|++|+|+|.+||+|+.||.|+||++. ++..+..+.+|.+.|++|+|+++ +.+|++|+.||.|+|
T Consensus 4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~i 83 (379)
T 3jrp_A 4 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI 83 (379)
T ss_dssp -CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEE
T ss_pred cEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEE
Confidence 45678999999999999999999999999999999998 66788899999999999999987 999999999999999
Q ss_pred EECCCCc--eEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceE
Q psy9598 545 WNLQTLA--PISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHIL 622 (1915)
Q Consensus 545 WDl~tg~--~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~ 622 (1915)
||+.++. .+..+.+|...|++++|+|.. .+.+|++++.||.|++||+.......... +..|...|.
T Consensus 84 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~l~~~~~d~~i~v~d~~~~~~~~~~~----------~~~~~~~v~ 151 (379)
T 3jrp_A 84 WKEENGRWSQIAVHAVHSASVNSVQWAPHE--YGPLLLVASSDGKVSVVEFKENGTTSPII----------IDAHAIGVN 151 (379)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEEECCGG--GCSEEEEEETTSEEEEEECCTTSCCCEEE----------EECCTTCEE
T ss_pred EEcCCCceeEeeeecCCCcceEEEEeCCCC--CCCEEEEecCCCcEEEEecCCCCceeeEE----------ecCCCCceE
Confidence 9999987 778888999999999999951 15899999999999999998774332222 235678899
Q ss_pred EEEECC-------------CCcEEEEEeCCCeEEEEEecCCCC-CceeEEeccCCCCeeEEEEcCC---CCEEEEEeCCC
Q psy9598 623 CSSFSP-------------GGLFLATGSGDHHVRVYKMDGVDS-PLGILEVEEHSDKVDSIQWSHS---HLRFVSGSRDG 685 (1915)
Q Consensus 623 ~l~fsp-------------dg~~Lasgs~Dg~I~IwDl~~~~~-~~~i~~l~~h~~~V~sl~fspd---g~~L~sgs~DG 685 (1915)
+++|+| ++.+|++|+.||.|++||+..... ...+..+.+|...|.+++|+|+ +.+|++++.||
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg 231 (379)
T 3jrp_A 152 SASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDR 231 (379)
T ss_dssp EEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTS
T ss_pred EEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCC
Confidence 999999 699999999999999999964432 2345578899999999999999 89999999999
Q ss_pred cEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCce
Q psy9598 686 TALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDL 756 (1915)
Q Consensus 686 ~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~ 756 (1915)
.|+|||+.++..... ........+...|++++|+|++.+|++++. ||.|++|++..+..
T Consensus 232 ~i~iwd~~~~~~~~~-----------~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-dg~i~iw~~~~~~~ 290 (379)
T 3jrp_A 232 TCIIWTQDNEQGPWK-----------KTLLKEEKFPDVLWRASWSLSGNVLALSGG-DNKVTLWKENLEGK 290 (379)
T ss_dssp CEEEEEESSTTSCCE-----------EEESSSSCCSSCEEEEEECSSSCCEEEEES-SSSEEEEEEEETTE
T ss_pred EEEEEeCCCCCccce-----------eeeeccccCCCcEEEEEEcCCCCEEEEecC-CCcEEEEeCCCCCc
Confidence 999999987641110 011122346778999999999999999998 99999999875543
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.98 E-value=1.5e-31 Score=332.66 Aligned_cols=313 Identities=13% Similarity=0.082 Sum_probs=234.0
Q ss_pred EeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCC--ceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEE
Q psy9598 514 LRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTL--APISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFW 591 (1915)
Q Consensus 514 l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg--~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iW 591 (1915)
+..|.+.|++++|+|++.+||+|+.|+.|+|||+.++ .++..+.+|.+.|++++|+|+ +.+|++|+.||+|++|
T Consensus 7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~----~~~l~s~s~d~~v~vw 82 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPK----SNRIVTCSQDRNAYVY 82 (377)
T ss_dssp EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTT----TCCEEEEETTSSEEEC
T ss_pred EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCC----CCEEEEEeCCCeEEEE
Confidence 4457789999999999999999999999999999988 778889999999999999994 4899999999999999
Q ss_pred ecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEecc-CCCCeeEEE
Q psy9598 592 KYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEE-HSDKVDSIQ 670 (1915)
Q Consensus 592 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~-h~~~V~sl~ 670 (1915)
|+.++.... ....+..|...|.+++|+|++.+|++|+.||.|++||+...........+.+ |...|.+++
T Consensus 83 d~~~~~~~~---------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~ 153 (377)
T 3dwl_C 83 EKRPDGTWK---------QTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLD 153 (377)
T ss_dssp ------CCC---------CEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEE
T ss_pred EcCCCCcee---------eeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEE
Confidence 998875111 1122345778999999999999999999999999999965443334566777 999999999
Q ss_pred EcCCCCEEEEEeCCCcEEEEEccCCceEEeeecc--cccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEE
Q psy9598 671 WSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDM--NTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKI 748 (1915)
Q Consensus 671 fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~v 748 (1915)
|+|++.+|++|+.||.|++||+............ ....+........ .|...|.+++|+|++.+|++++. ||.|++
T Consensus 154 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~-d~~i~i 231 (377)
T 3dwl_C 154 WHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGH-DSSVTI 231 (377)
T ss_dssp ECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEET-TTEEC-
T ss_pred EcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeC-CCcEEE
Confidence 9999999999999999999999754321100000 0000001111222 68889999999999999999998 999999
Q ss_pred EECCCCce----EEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccc----------------------
Q psy9598 749 WDAFNGDL----VQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGY---------------------- 802 (1915)
Q Consensus 749 wD~~tg~~----i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~---------------------- 802 (1915)
||+.++.. +..+.+|...|++++|+| ++.+|++|+.++.+ +|+.........
T Consensus 232 wd~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (377)
T 3dwl_C 232 AYPSAPEQPPRALITVKLSQLPLRSLLWAN-ESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGR 309 (377)
T ss_dssp CEECSTTSCEEECCCEECSSSCEEEEEEEE-TTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCC
T ss_pred EECCCCCCcceeeEeecCCCCceEEEEEcC-CCCEEEEEcCCcEE-EEEeCCCceEEEeeeccccccccccccccccccc
Confidence 99999988 888999999999999999 89999988877666 666642210000
Q ss_pred ------------eeeee-----------eecCCCCcceEEEEEcCC-CC---EEEEEeCCCeEEEEeC
Q psy9598 803 ------------KWFHN-----------IVEGQGEGALFDGKWSPD-GT---TCALTDSYGHLLVYGL 843 (1915)
Q Consensus 803 ------------~~~~~-----------~~~~~~~~~V~~vafSpd-g~---~Lasg~~dG~I~Iwdl 843 (1915)
..|.. .+...|.+.|+++++.+. +. .|++|+.||.|+||++
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 310 EEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp CC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred ccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 00100 011236788999997664 33 6999999999999986
|
| >3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3e-32 Score=318.31 Aligned_cols=185 Identities=24% Similarity=0.404 Sum_probs=155.1
Q ss_pred ChHHHHhhcccccCCHHHHHHHHHHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHhcCCCCCCCcchhhhhccccCCCCCc
Q psy9598 1 LTTLRARFQNRFYRRITSAQFDVRYLAANAEKFNEPHSNIVKYARIITDLLLRIIKEPNPVDVPVVYHELLQNYETSSSE 80 (1915)
Q Consensus 1 L~tI~~kl~~~~Y~~~~ef~~D~~li~~Na~~yN~p~s~I~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (1915)
|+||++||+++.|.++++|++||+|||+||++||+++|.|+.+|+.|.+++.+.+++.... ......
T Consensus 57 L~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~s~i~~~A~~l~~~~~~~~~~~~~~-----~~~~ek-------- 123 (265)
T 3uv5_A 57 LQTLRENVRKRLYPSREEFREHLELIVKNSATYNGPKHSLTQISQSMLDLCDEKLKEKEDK-----LARLEK-------- 123 (265)
T ss_dssp HHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHTHHH-----HHHHHH--------
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHHHHHHHHHHHhhh-----hhhhhh--------
Confidence 6899999999999999999999999999999999999999999999999999877763210 000000
Q ss_pred ccccccccccccccCCCCcchhhhhhhhccccCCchhHHHHHHHHHHH-HhcCCCCCCCCCCCCCCCCCCccccCCCcCC
Q psy9598 81 EEEEEDSKSRQRRVRPTAVTRAQREAMNQKKLKRPFNWKNECREVLET-LWVCPDSEPFRKPVDKLDHPDYDKIVIAPMD 159 (1915)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~-l~~~~~~~~F~~pvd~~~~pdY~~iIk~Pmd 159 (1915)
...|..... ....+...|..++.. |++++.++||++|||...+||||+||++|||
T Consensus 124 ------------~i~p~~dd~------------~~~~~~~il~~i~~~~l~~~~~~~~F~~pv~~~~~pdY~~iIk~Pmd 179 (265)
T 3uv5_A 124 ------------AINPLLDDD------------DQVAFSFILDNIVTQKMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMD 179 (265)
T ss_dssp ------------HHSTTTTCH------------HHHHHHHHHHHHHHHTTTTSTTCGGGTSCCCTTTSTTHHHHCSSCCC
T ss_pred ------------hhhhccccc------------hhhHHHHHHHHHHHHHHHhhhhhHHHhCCCChhHhCcHHHHhCCccc
Confidence 000000000 012345556666654 8889999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9598 160 LGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQNKRSKIYIMTTRLSEFAEEHLRRLTVRWN 223 (1915)
Q Consensus 160 l~ti~~kl~~~~Y~~~~~f~~D~~Lif~N~~~yN~~~~s~i~~~a~~l~~~f~~~~~~~~~~~~ 223 (1915)
|+||++||.+|.|.++++|..||+|||.||++||+++ |.||.+|..|+++|++.|+++...+.
T Consensus 180 l~tI~~kl~~~~Y~~~~~f~~D~~lif~Na~~yN~~~-s~~~~~A~~l~~~~~~~~~~~~~~~~ 242 (265)
T 3uv5_A 180 LETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPE-SQYTKTAQEIVNVCYQTLTEYDEHLT 242 (265)
T ss_dssp HHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999977 99999999999999999999987764
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-30 Score=323.87 Aligned_cols=287 Identities=13% Similarity=0.081 Sum_probs=222.1
Q ss_pred CCcEEEEEEcCCCCEEEEEECCC-------cEEEEECCCCc----------EEEEEeCCCCCEEEEEEeCCCCEEEEEe-
Q psy9598 476 LSAVFCVLFDKLGEVIVTGADDL-------LIKLWRARDGK----------LLATLRGCSGEISDIAIDNRNILLAAGT- 537 (1915)
Q Consensus 476 ~~~V~~vafspdg~~LaTGs~Dg-------~I~IWd~~tg~----------~~~~l~gH~~~I~~Lafspdg~~LaSgs- 537 (1915)
..+|+||+|+|+|++||+||.|. .|+||++..+. ....|.+|...|++++++. ..+++|+
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~--~~~~~g~~ 91 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASK--GIILVGCN 91 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEET--TEEEEECC
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCC--CEEEEEEC
Confidence 36899999999999999998654 49999987653 1235678999999888764 4666654
Q ss_pred ----------CCCcEEEEECCCCceEE----Ee-----ecCCCCeEEEEeccCccCCCcEEEE--EeCCCeEEEEecccC
Q psy9598 538 ----------VDKTIRIWNLQTLAPIS----VL-----VGHQGIITGVNFCPLEVNGFNYLAS--TSTDGCIGFWKYKLD 596 (1915)
Q Consensus 538 ----------~DgtIrVWDl~tg~~~~----~l-----~~h~~~V~sl~fsp~~~~d~~~L~s--gs~DgtI~iWDl~~~ 596 (1915)
.|++|++|++.++.... .. ..+...+.+++|+|+ +.+|++ ++.|++|+|||+.++
T Consensus 92 ~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpD----g~~la~as~~~d~~i~iwd~~~~ 167 (365)
T 4h5i_A 92 ENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISRE----GTVAAIASSKVPAIMRIIDPSDL 167 (365)
T ss_dssp CCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTT----SSCEEEEESCSSCEEEEEETTTT
T ss_pred CCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCC----CCEEEEEECCCCCEEEEeECCCC
Confidence 47789999987653221 11 124456899999995 477654 457899999999887
Q ss_pred ccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCC
Q psy9598 597 IDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHL 676 (1915)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~ 676 (1915)
..+..+ .|...|.+++|+|+|.+|++++.++ +.+|+... ..........+|...|.+++|+|++.
T Consensus 168 ~~~~~~-------------~~~~~V~~v~fspdg~~l~s~s~~~-~~~~~~~~-~~~~~~~~~~~~~~~v~~v~fspdg~ 232 (365)
T 4h5i_A 168 TEKFEI-------------ETRGEVKDLHFSTDGKVVAYITGSS-LEVISTVT-GSCIARKTDFDKNWSLSKINFIADDT 232 (365)
T ss_dssp EEEEEE-------------ECSSCCCEEEECTTSSEEEEECSSC-EEEEETTT-CCEEEEECCCCTTEEEEEEEEEETTE
T ss_pred cEEEEe-------------CCCCceEEEEEccCCceEEecccee-EEEEEecc-CcceeeeecCCCCCCEEEEEEcCCCC
Confidence 643332 1346799999999999999998665 55555422 22222234567889999999999999
Q ss_pred EEEEEeCCC----cEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECC
Q psy9598 677 RFVSGSRDG----TALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAF 752 (1915)
Q Consensus 677 ~L~sgs~DG----~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~ 752 (1915)
+|++++.|+ .+++|++.......... .....+...|++++|+|+|++|++|+. |++|+|||+.
T Consensus 233 ~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~------------~~~~~~~~~V~~~~~Spdg~~lasgs~-D~~V~iwd~~ 299 (365)
T 4h5i_A 233 VLIAASLKKGKGIVLTKISIKSGNTSVLRS------------KQVTNRFKGITSMDVDMKGELAVLASN-DNSIALVKLK 299 (365)
T ss_dssp EEEEEEESSSCCEEEEEEEEETTEEEEEEE------------EEEESSCSCEEEEEECTTSCEEEEEET-TSCEEEEETT
T ss_pred EEEEEecCCcceeEEeecccccceecceee------------eeecCCCCCeEeEEECCCCCceEEEcC-CCEEEEEECC
Confidence 999999887 68889887665332111 123346778999999999999999998 9999999999
Q ss_pred CCceEEEe-eCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCC
Q psy9598 753 NGDLVQVL-KGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSS 797 (1915)
Q Consensus 753 tg~~i~~l-~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~ 797 (1915)
+++++..+ .+|...|++|+|+| ++.+|||||.|++|+||++...
T Consensus 300 ~~~~~~~~~~gH~~~V~~v~fSp-dg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 300 DLSMSKIFKQAHSFAITEVTISP-DSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp TTEEEEEETTSSSSCEEEEEECT-TSCEEEEEETTSEEEEEECCTT
T ss_pred CCcEEEEecCcccCCEEEEEECC-CCCEEEEEeCCCeEEEEEcCCC
Confidence 99999875 79999999999999 9999999999999999999654
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.9e-30 Score=316.73 Aligned_cols=311 Identities=12% Similarity=0.197 Sum_probs=244.3
Q ss_pred cCCceeeeEEecCCCCcEEEEEEcCC---CCEEEEEECCCcEEEEECCC-CcEE-EEEeCCCCCEEEEEEeCCCCEEEEE
Q psy9598 462 KYSNLRQHYVNLGHLSAVFCVLFDKL---GEVIVTGADDLLIKLWRARD-GKLL-ATLRGCSGEISDIAIDNRNILLAAG 536 (1915)
Q Consensus 462 ~~~~~~~~~~l~gH~~~V~~vafspd---g~~LaTGs~Dg~I~IWd~~t-g~~~-~~l~gH~~~I~~Lafspdg~~LaSg 536 (1915)
....+.....+.+|.+.|+||+|+|+ |.+|++|+.||.|+|||+.+ +..+ ..+.+|.+.|++|+|+|++.+|++|
T Consensus 25 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 104 (368)
T 3mmy_A 25 NHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTA 104 (368)
T ss_dssp SSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEE
T ss_pred CCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEE
Confidence 34456667788999999999999999 69999999999999999997 5555 7889999999999999999999999
Q ss_pred eCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCC
Q psy9598 537 TVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRP 616 (1915)
Q Consensus 537 s~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~ 616 (1915)
+.||.|+|||+.++..+. +.+|...|++++|++.. ++.+|++|+.||.|++||+.++..+..+..+
T Consensus 105 ~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~----------- 170 (368)
T 3mmy_A 105 SCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAP--NYSCVMTGSWDKTLKFWDTRSSNPMMVLQLP----------- 170 (368)
T ss_dssp ETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECS--SCEEEEEEETTSEEEEECSSCSSCSEEEECS-----------
T ss_pred cCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCC--CCCEEEEccCCCcEEEEECCCCcEEEEEecC-----------
Confidence 999999999999988766 56799999999994322 5589999999999999999988655444332
Q ss_pred CCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCE----EEEEeCCCcEEEEEc
Q psy9598 617 GNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLR----FVSGSRDGTALIWYY 692 (1915)
Q Consensus 617 ~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~----L~sgs~DG~I~IWDl 692 (1915)
..+.++.+.+ ..+++++.++.+.+|++..... ........+...+.++++.+++.. |++|+.||.|++|++
T Consensus 171 --~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~ 245 (368)
T 3mmy_A 171 --ERCYCADVIY--PMAVVATAERGLIVYQLENQPS-EFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYI 245 (368)
T ss_dssp --SCEEEEEEET--TEEEEEEGGGCEEEEECSSSCE-EEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEES
T ss_pred --CCceEEEecC--CeeEEEeCCCcEEEEEeccccc-hhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEec
Confidence 4566666664 4788999999999999954321 111122334556677777665554 999999999999999
Q ss_pred cCCce---EEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCCCeEE
Q psy9598 693 KCSQW---RFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFV 769 (1915)
Q Consensus 693 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~s 769 (1915)
..... ........ ..........+...|++++|+|++.+|++++. ||.|+|||+.+++++..+.+|...|++
T Consensus 246 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~ 320 (368)
T 3mmy_A 246 NPPNPAKDNFTFKCHR----SNGTNTSAPQDIYAVNGIAFHPVHGTLATVGS-DGRFSFWDKDARTKLKTSEQLDQPISA 320 (368)
T ss_dssp SCSCHHHHSEEEECSE----EC----CCCEEECCEEEEEECTTTCCEEEEET-TSCEEEEETTTTEEEEECCCCSSCEEE
T ss_pred CCCCccccceeeeeee----cccccccccccccceEEEEEecCCCEEEEEcc-CCeEEEEECCCCcEEEEecCCCCCceE
Confidence 87631 11110000 00001112234457999999999999999998 999999999999999999999999999
Q ss_pred EEEccCCCCEEEEEecCceEEEEECCCC
Q psy9598 770 LESHPFDSRVLLSAGHDGLIIIWDILSS 797 (1915)
Q Consensus 770 l~~sp~dg~~LaSgs~DG~I~IWdl~s~ 797 (1915)
++|+| ++.+|++|+.|+..+.|++...
T Consensus 321 ~~~s~-~g~~l~~~s~d~~~~~~~~~~~ 347 (368)
T 3mmy_A 321 CCFNH-NGNIFAYASSYDWSKGHEFYNP 347 (368)
T ss_dssp EEECT-TSSCEEEEECCCSTTCGGGCCT
T ss_pred EEECC-CCCeEEEEecccccccccccCC
Confidence 99999 9999999999987766665543
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-29 Score=314.02 Aligned_cols=293 Identities=13% Similarity=0.069 Sum_probs=225.3
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCC-------cEEEEECCCCce----------EEEeecCCCCeEEEEeccCccCCCcEEE
Q psy9598 518 SGEISDIAIDNRNILLAAGTVDK-------TIRIWNLQTLAP----------ISVLVGHQGIITGVNFCPLEVNGFNYLA 580 (1915)
Q Consensus 518 ~~~I~~Lafspdg~~LaSgs~Dg-------tIrVWDl~tg~~----------~~~l~~h~~~V~sl~fsp~~~~d~~~L~ 580 (1915)
..+|+|++|+|++++||+|+.+. .|+||++..+.. ...+.+|...|.++++.. ..++
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~------~~~~ 87 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASK------GIIL 87 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEET------TEEE
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCC------CEEE
Confidence 45899999999999999998643 599999875432 234678888999998865 4555
Q ss_pred EE-----------eCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEe--CCCeEEEEEe
Q psy9598 581 ST-----------STDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGS--GDHHVRVYKM 647 (1915)
Q Consensus 581 sg-----------s~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs--~Dg~I~IwDl 647 (1915)
+| +.|++|++|++............ . .......+...+.+++|||||++|++++ .|++|+|||+
T Consensus 88 ~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~ 164 (365)
T 4h5i_A 88 VGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTS--V-DFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDP 164 (365)
T ss_dssp EECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEE--E-CSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEET
T ss_pred EEECCCccEEEEecCCCcEEEEEecCCCceEEEeee--e-ceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeEC
Confidence 54 45788999998765432211111 0 0111223446789999999999987544 6899999998
Q ss_pred cCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEE
Q psy9598 648 DGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMV 727 (1915)
Q Consensus 648 ~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v 727 (1915)
. ....+..+ .|.+.|.+|+|+|+|.+|++++.+ .+.+|+..++...... ....+...|.++
T Consensus 165 ~---~~~~~~~~-~~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~--------------~~~~~~~~v~~v 225 (365)
T 4h5i_A 165 S---DLTEKFEI-ETRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARK--------------TDFDKNWSLSKI 225 (365)
T ss_dssp T---TTEEEEEE-ECSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEE--------------CCCCTTEEEEEE
T ss_pred C---CCcEEEEe-CCCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeee--------------ecCCCCCCEEEE
Confidence 4 34455555 478889999999999999999855 5666766666543211 123467789999
Q ss_pred EECCCCCEEEEEEecCC----eEEEEECCCCce----EEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCcc
Q psy9598 728 AWDASDRWVITAINFNF----QIKIWDAFNGDL----VQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQ 799 (1915)
Q Consensus 728 a~spdg~~L~t~s~~Dg----~I~vwD~~tg~~----i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~ 799 (1915)
+|+|++.++++++. ++ .+++|++..+.. ...+.+|...|++|+|+| ++.+||+|+.||+|+|||+.++++
T Consensus 226 ~fspdg~~l~~~s~-d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Sp-dg~~lasgs~D~~V~iwd~~~~~~ 303 (365)
T 4h5i_A 226 NFIADDTVLIAASL-KKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDM-KGELAVLASNDNSIALVKLKDLSM 303 (365)
T ss_dssp EEEETTEEEEEEEE-SSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECT-TSCEEEEEETTSCEEEEETTTTEE
T ss_pred EEcCCCCEEEEEec-CCcceeEEeecccccceecceeeeeecCCCCCeEeEEECC-CCCceEEEcCCCEEEEEECCCCcE
Confidence 99999999999987 66 688999876643 456789999999999999 999999999999999999999887
Q ss_pred ccceeeeeeecCCCCcceEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q psy9598 800 RGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGGF 846 (1915)
Q Consensus 800 ~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl~s~ 846 (1915)
+..+. ..|.+.|++++|||||++||+|+.|++|+||++...
T Consensus 304 --~~~~~----~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 304 --SKIFK----QAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp --EEEET----TSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred --EEEec----CcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 55432 356789999999999999999999999999999643
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.9e-30 Score=325.46 Aligned_cols=305 Identities=15% Similarity=0.216 Sum_probs=229.9
Q ss_pred CCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCc-----------EEEEEeCCC------------CCEEEEEEeCCC
Q psy9598 474 GHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGK-----------LLATLRGCS------------GEISDIAIDNRN 530 (1915)
Q Consensus 474 gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~-----------~~~~l~gH~------------~~I~~Lafspdg 530 (1915)
.|.+.|+||+|+|+|.+||+|+.||.|+||++.++. ++..+.+|. +.|++|+|+|++
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 468999999999999999999999999999999887 688899998 889999999998
Q ss_pred --CEEEEEeCCCcEEEEECCCCceE---------------------------------------EE-eecCCCCeEEEEe
Q psy9598 531 --ILLAAGTVDKTIRIWNLQTLAPI---------------------------------------SV-LVGHQGIITGVNF 568 (1915)
Q Consensus 531 --~~LaSgs~DgtIrVWDl~tg~~~---------------------------------------~~-l~~h~~~V~sl~f 568 (1915)
.+|++|+.|++|+|||+.++... .. +.+|...|++++|
T Consensus 106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 185 (447)
T 3dw8_B 106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI 185 (447)
T ss_dssp SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence 89999999999999999764432 12 3689999999999
Q ss_pred ccCccCCCcEEEEEeCCCeEEEEecccCc-cccceeccCccccccccCCCCCceEEEEECCCC-cEEEEEeCCCeEEEEE
Q psy9598 569 CPLEVNGFNYLASTSTDGCIGFWKYKLDI-DISKTVFHEPVMFNERIRPGNAHILCSSFSPGG-LFLATGSGDHHVRVYK 646 (1915)
Q Consensus 569 sp~~~~d~~~L~sgs~DgtI~iWDl~~~~-~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg-~~Lasgs~Dg~I~IwD 646 (1915)
+|+ +.+|++| .||+|++||+.... .+..+... ...+..|...|.+++|+|++ .+|++|+.||.|++||
T Consensus 186 ~~~----~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~-----~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd 255 (447)
T 3dw8_B 186 NSD----YETYLSA-DDLRINLWHLEITDRSFNIVDIK-----PANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCD 255 (447)
T ss_dssp CTT----SSEEEEE-CSSEEEEEETTEEEEEEEEEECC-----CSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEE
T ss_pred cCC----CCEEEEe-CCCeEEEEECCCCCceeeeeecc-----cccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEE
Confidence 994 4899998 79999999998432 22111111 11244677899999999998 9999999999999999
Q ss_pred ecCCCC-CceeEEeccCCC------------CeeEEEEcCCCCEEEEEeCCCcEEEEEccC-CceEEeeecccccCCCCc
Q psy9598 647 MDGVDS-PLGILEVEEHSD------------KVDSIQWSHSHLRFVSGSRDGTALIWYYKC-SQWRFIRLDMNTCLPHTK 712 (1915)
Q Consensus 647 l~~~~~-~~~i~~l~~h~~------------~V~sl~fspdg~~L~sgs~DG~I~IWDl~~-~~~~~~~~~~~~~~~~~~ 712 (1915)
+..... ...+..+.+|.. .|.+++|+|+|.+|++++. |.|+|||+.+ +............. ...
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~-~~l 333 (447)
T 3dw8_B 256 MRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLR-SKL 333 (447)
T ss_dssp TTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGT-TTH
T ss_pred CcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecccccc-ccc
Confidence 954331 112466777775 9999999999999999999 9999999986 44222111000000 000
Q ss_pred cccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCC-----------------------------
Q psy9598 713 ETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGH----------------------------- 763 (1915)
Q Consensus 713 ~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH----------------------------- 763 (1915)
...........+..++|+|++.+|++++. ||.|+|||+.+++.+. +.+|
T Consensus 334 ~~~~~~~~i~~~~~~~~s~~~~~l~s~s~-dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (447)
T 3dw8_B 334 CSLYENDCIFDKFECCWNGSDSVVMTGSY-NNFFRMFDRNTKRDIT-LEASRENNKPRTVLKPRKVCASGKRKKDEISVD 411 (447)
T ss_dssp HHHHHTSGGGCCCCEEECTTSSEEEEECS-TTEEEEEETTTCCEEE-EECCSTTCCTTCBCCCCCEECSSCCCTTCEEGG
T ss_pred cccccccccccceEEEECCCCCEEEEecc-CCEEEEEEcCCCccee-eeecccccccccccCCccccccCCccccccccc
Confidence 00000001112345999999999999988 9999999999988763 3322
Q ss_pred ----CCCeEEEEEccCCCCEEEEEecCceEEEEEC
Q psy9598 764 ----TNEVFVLESHPFDSRVLLSAGHDGLIIIWDI 794 (1915)
Q Consensus 764 ----~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl 794 (1915)
...|..++|+| ++.+||+|+.++ ++||..
T Consensus 412 ~~~~~~~i~~~~~~p-~~~~la~~~~~~-~~~~~~ 444 (447)
T 3dw8_B 412 SLDFNKKILHTAWHP-KENIIAVATTNN-LYIFQD 444 (447)
T ss_dssp GCCTTSCCCEEEECS-SSSEEEEECSSC-EEEEEC
T ss_pred ccccCCceeEEEECC-CCCEEEEEecce-eeeecc
Confidence 35688999999 999999998775 778764
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1e-29 Score=306.31 Aligned_cols=258 Identities=22% Similarity=0.303 Sum_probs=211.5
Q ss_pred EEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCC--CceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEE
Q psy9598 512 ATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQT--LAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIG 589 (1915)
Q Consensus 512 ~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~t--g~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~ 589 (1915)
..+.+|.+.|++++|+++|++||+|+.|++|+|||+.+ +.++.++.+|.+.|++++|++.. ++.+|++|+.||+|+
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~--~g~~l~s~s~D~~v~ 80 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK--FGTILASCSYDGKVM 80 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGG--GCSEEEEEETTTEEE
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCC--cCCEEEEEcCCCEEE
Confidence 46789999999999999999999999999999999974 46788999999999999998632 358999999999999
Q ss_pred EEecccCccccceeccCccccccccCCCCCceEEEEECCC--CcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCee
Q psy9598 590 FWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPG--GLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVD 667 (1915)
Q Consensus 590 iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspd--g~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~ 667 (1915)
+||+.++..... ..+..|...|.+++|+|+ |.+|++|+.||.|++||+..... .....+.+|...|.
T Consensus 81 iWd~~~~~~~~~----------~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~-~~~~~~~~h~~~v~ 149 (297)
T 2pm7_B 81 IWKEENGRWSQI----------AVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGT-TSPIIIDAHAIGVN 149 (297)
T ss_dssp EEEBSSSCBCCC----------EEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSC-BCCEEEECCSSCEE
T ss_pred EEEcCCCceEEE----------EEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCc-eeeeeeecccCccc
Confidence 999987632111 122356788999999997 88999999999999999954322 22356789999999
Q ss_pred EEEEcCC-------------CCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCC-
Q psy9598 668 SIQWSHS-------------HLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASD- 733 (1915)
Q Consensus 668 sl~fspd-------------g~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg- 733 (1915)
+++|+|+ +.+|++|+.||+|+|||+.++..... ......+|...|.+++|+|++
T Consensus 150 ~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~------------~~~~l~~H~~~V~~v~~sp~~~ 217 (297)
T 2pm7_B 150 SASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYV------------LESTLEGHSDWVRDVAWSPTVL 217 (297)
T ss_dssp EEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEE------------EEEEECCCSSCEEEEEECCCCS
T ss_pred eEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEE------------EEEEecCCCCceEEEEECCCCC
Confidence 9999997 56999999999999999987652110 011234578899999999995
Q ss_pred --CEEEEEEecCCeEEEEECCCCc---eEEEe--eCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCC
Q psy9598 734 --RWVITAINFNFQIKIWDAFNGD---LVQVL--KGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILS 796 (1915)
Q Consensus 734 --~~L~t~s~~Dg~I~vwD~~tg~---~i~~l--~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s 796 (1915)
.+|++++. |++|+|||+.++. ....+ .+|...|++++|+| ++.+|++|+.||+|+||+...
T Consensus 218 ~~~~las~s~-D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 218 LRSYMASVSQ-DRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSL-SGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp SSEEEEEEET-TSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECS-SSCCEEEEETTSCEEEEEECT
T ss_pred CceEEEEEEC-CCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECC-CCCEEEEEcCCCcEEEEEECC
Confidence 78888887 9999999997743 22333 57888999999999 999999999999999999863
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.5e-29 Score=316.32 Aligned_cols=297 Identities=19% Similarity=0.282 Sum_probs=238.5
Q ss_pred EEEEeCCCCC--EEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeec-CCCCeEEEEeccCccCCCcEEEEEeCCCe
Q psy9598 511 LATLRGCSGE--ISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVG-HQGIITGVNFCPLEVNGFNYLASTSTDGC 587 (1915)
Q Consensus 511 ~~~l~gH~~~--I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~-h~~~V~sl~fsp~~~~d~~~L~sgs~Dgt 587 (1915)
+....+|... +.+++|++ ..|++++.|+.|+|||+.++.....+.. |...|++++|+|+ +.+|++|+.||.
T Consensus 84 ~~~~~~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~----~~~l~~~~~dg~ 157 (401)
T 4aez_A 84 VLDAPGIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHD----GSFLSVGLGNGL 157 (401)
T ss_dssp EEECTTCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTT----SSEEEEEETTSC
T ss_pred eeeCCCCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCC----CCEEEEECCCCe
Confidence 3344566655 45566665 4578888999999999999998887776 8899999999994 589999999999
Q ss_pred EEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCee
Q psy9598 588 IGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVD 667 (1915)
Q Consensus 588 I~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~ 667 (1915)
|++||+.++..+.. +..|...|.+++| ++.+|++|+.||.|++||+.. ....+..+.+|.+.|.
T Consensus 158 i~iwd~~~~~~~~~------------~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~--~~~~~~~~~~~~~~v~ 221 (401)
T 4aez_A 158 VDIYDVESQTKLRT------------MAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRI--ANHQIGTLQGHSSEVC 221 (401)
T ss_dssp EEEEETTTCCEEEE------------ECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTS--SSCEEEEEECCSSCEE
T ss_pred EEEEECcCCeEEEE------------ecCCCCceEEEEE--CCCEEEEEcCCCCEEEEeccc--CcceeeEEcCCCCCee
Confidence 99999987754332 2356789999999 567999999999999999953 2345677889999999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEe--cCCe
Q psy9598 668 SIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAIN--FNFQ 745 (1915)
Q Consensus 668 sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~--~Dg~ 745 (1915)
+++|+|++.+|++|+.||.|++||+.++..... ...+...|.+++|+|++..++++++ .|+.
T Consensus 222 ~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~----------------~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~ 285 (401)
T 4aez_A 222 GLAWRSDGLQLASGGNDNVVQIWDARSSIPKFT----------------KTNHNAAVKAVAWCPWQSNLLATGGGTMDKQ 285 (401)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTCSSEEEE----------------ECCCSSCCCEEEECTTSTTEEEEECCTTTCE
T ss_pred EEEEcCCCCEEEEEeCCCeEEEccCCCCCccEE----------------ecCCcceEEEEEECCCCCCEEEEecCCCCCE
Confidence 999999999999999999999999998764432 2236778999999998765555442 4999
Q ss_pred EEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEE--ecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEc
Q psy9598 746 IKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSA--GHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWS 823 (1915)
Q Consensus 746 I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSg--s~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafS 823 (1915)
|++||+.++.++..+. |...|.+++|+| ++.+|+++ +.||.|+||++.++.. ...+. ...|.+.|.+++|+
T Consensus 286 i~i~d~~~~~~~~~~~-~~~~v~~~~~s~-~~~~l~~~~g~~dg~i~v~~~~~~~~--~~~~~---~~~h~~~v~~~~~s 358 (401)
T 4aez_A 286 IHFWNAATGARVNTVD-AGSQVTSLIWSP-HSKEIMSTHGFPDNNLSIWSYSSSGL--TKQVD---IPAHDTRVLYSALS 358 (401)
T ss_dssp EEEEETTTCCEEEEEE-CSSCEEEEEECS-SSSEEEEEECTTTCEEEEEEEETTEE--EEEEE---EECCSSCCCEEEEC
T ss_pred EEEEECCCCCEEEEEe-CCCcEEEEEECC-CCCeEEEEeecCCCcEEEEecCCccc--eeEEE---ecCCCCCEEEEEEC
Confidence 9999999999999886 567899999999 88999885 4899999999988765 22221 12466889999999
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCCcccccC
Q psy9598 824 PDGTTCALTDSYGHLLVYGLGGFKRPQNI 852 (1915)
Q Consensus 824 pdg~~Lasg~~dG~I~Iwdl~s~~~~~~l 852 (1915)
|+|.+|++++.||.|+||++.+++.+...
T Consensus 359 ~dg~~l~s~~~dg~i~iw~~~~~~~~~~~ 387 (401)
T 4aez_A 359 PDGRILSTAASDENLKFWRVYDGDHVKRP 387 (401)
T ss_dssp TTSSEEEEECTTSEEEEEECCC-------
T ss_pred CCCCEEEEEeCCCcEEEEECCCCcccccc
Confidence 99999999999999999999988766543
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.5e-30 Score=325.76 Aligned_cols=313 Identities=15% Similarity=0.205 Sum_probs=233.9
Q ss_pred CCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCc-----------eEEEeecCC------------CCeEEEEeccCcc
Q psy9598 517 CSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLA-----------PISVLVGHQ------------GIITGVNFCPLEV 573 (1915)
Q Consensus 517 H~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~-----------~~~~l~~h~------------~~V~sl~fsp~~~ 573 (1915)
|.+.|++|+|+|+|.+||+|+.||.|+|||+.++. ++..+.+|. +.|++++|+|.+
T Consensus 27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~- 105 (447)
T 3dw8_B 27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK- 105 (447)
T ss_dssp GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC-
T ss_pred ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC-
Confidence 57899999999999999999999999999999877 578899998 889999999943
Q ss_pred CCCcEEEEEeCCCeEEEEecccCccccc-------------------eeccC--c-------cccccccCCCCCceEEEE
Q psy9598 574 NGFNYLASTSTDGCIGFWKYKLDIDISK-------------------TVFHE--P-------VMFNERIRPGNAHILCSS 625 (1915)
Q Consensus 574 ~d~~~L~sgs~DgtI~iWDl~~~~~~~~-------------------~~~~~--~-------~~~~~~~~~~~~~V~~l~ 625 (1915)
+..+|++++.||+|++||+.++..... +.+.. + ........+|...|.+++
T Consensus 106 -~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 184 (447)
T 3dw8_B 106 -NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSIS 184 (447)
T ss_dssp -SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEE
T ss_pred -CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEE
Confidence 226899999999999999976432100 00000 0 000011357889999999
Q ss_pred ECCCCcEEEEEeCCCeEEEEEecCCCCCceeE-----EeccCCCCeeEEEEcCCC-CEEEEEeCCCcEEEEEccCCce--
Q psy9598 626 FSPGGLFLATGSGDHHVRVYKMDGVDSPLGIL-----EVEEHSDKVDSIQWSHSH-LRFVSGSRDGTALIWYYKCSQW-- 697 (1915)
Q Consensus 626 fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~-----~l~~h~~~V~sl~fspdg-~~L~sgs~DG~I~IWDl~~~~~-- 697 (1915)
|+|++.+|++| .||.|+|||+........+. .+.+|...|.+++|+|++ .+|++|+.||.|++||++++..
T Consensus 185 ~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~ 263 (447)
T 3dw8_B 185 INSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCD 263 (447)
T ss_dssp ECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSC
T ss_pred EcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcccc
Confidence 99999999998 79999999994222111111 356899999999999998 9999999999999999998763
Q ss_pred --EEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCC-CceEEEeeCCCCC--------
Q psy9598 698 --RFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFN-GDLVQVLKGHTNE-------- 766 (1915)
Q Consensus 698 --~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~t-g~~i~~l~gH~~~-------- 766 (1915)
........ ..........+...|.+++|+|+|.+|++++. +.|+|||+.+ +.++..+.+|...
T Consensus 264 ~~~~~~~~~~----~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~--~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~ 337 (447)
T 3dw8_B 264 RHSKLFEEPE----DPSNRSFFSEIISSISDVKFSHSGRYMMTRDY--LSVKVWDLNMENRPVETYQVHEYLRSKLCSLY 337 (447)
T ss_dssp TTCEEECCC---------CCHHHHHTTCEEEEEECTTSSEEEEEES--SEEEEEETTCCSSCSCCEESCGGGTTTHHHHH
T ss_pred ceeeEeccCC----CccccccccccCceEEEEEECCCCCEEEEeeC--CeEEEEeCCCCccccceeeccccccccccccc
Confidence 11110000 00000111223458999999999999998764 9999999997 8999999998642
Q ss_pred -------eEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeee----------------------------ecC
Q psy9598 767 -------VFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNI----------------------------VEG 811 (1915)
Q Consensus 767 -------V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~----------------------------~~~ 811 (1915)
++.++|+| ++.+|++|+.||.|+|||+.+++. +. +... ...
T Consensus 338 ~~~~i~~~~~~~~s~-~~~~l~s~s~dg~v~iwd~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (447)
T 3dw8_B 338 ENDCIFDKFECCWNG-SDSVVMTGSYNNFFRMFDRNTKRD--IT-LEASRENNKPRTVLKPRKVCASGKRKKDEISVDSL 413 (447)
T ss_dssp HTSGGGCCCCEEECT-TSSEEEEECSTTEEEEEETTTCCE--EE-EECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGC
T ss_pred cccccccceEEEECC-CCCEEEEeccCCEEEEEEcCCCcc--ee-eeecccccccccccCCccccccCCccccccccccc
Confidence 33499999 999999999999999999998765 21 1100 011
Q ss_pred CCCcceEEEEEcCCCCEEEEEeCCCeEEEEeC
Q psy9598 812 QGEGALFDGKWSPDGTTCALTDSYGHLLVYGL 843 (1915)
Q Consensus 812 ~~~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl 843 (1915)
.....|.+++|+|+|.+||+++.++ +++|.-
T Consensus 414 ~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~ 444 (447)
T 3dw8_B 414 DFNKKILHTAWHPKENIIAVATTNN-LYIFQD 444 (447)
T ss_dssp CTTSCCCEEEECSSSSEEEEECSSC-EEEEEC
T ss_pred ccCCceeEEEECCCCCEEEEEecce-eeeecc
Confidence 2235789999999999999998875 777753
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-28 Score=311.87 Aligned_cols=288 Identities=18% Similarity=0.298 Sum_probs=235.6
Q ss_pred CEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEee--cCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCc
Q psy9598 520 EISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLV--GHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDI 597 (1915)
Q Consensus 520 ~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~--~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~ 597 (1915)
.++.|+||+++ +||+|. |++|+|||+.+|+++..+. +|...|++|+|+|+ +.+|++|+.||+|++||+.++.
T Consensus 107 y~~~l~wS~~n-~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspd----g~~lasgs~Dg~v~iWd~~~~~ 180 (420)
T 4gga_A 107 YLNLVDWSSGN-VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKE----GNYLAVGTSSAEVQLWDVQQQK 180 (420)
T ss_dssp TCBCEEECTTS-EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTT----SSEEEEEETTSCEEEEETTTTE
T ss_pred cceeEEECCCC-EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCC----CCEEEEEECCCeEEEEEcCCCc
Confidence 46789999764 777775 9999999999999887665 67788999999994 5899999999999999998876
Q ss_pred cccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCE
Q psy9598 598 DISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLR 677 (1915)
Q Consensus 598 ~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~ 677 (1915)
.+.. +.+|...+.+++++ +.+|++|+.|+.+++||... ....+..+.+|...+..+.|++++.+
T Consensus 181 ~~~~------------~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~--~~~~~~~~~~h~~~~~~~~~~~~g~~ 244 (420)
T 4gga_A 181 RLRN------------MTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRV--AEHHVATLSGHSQEVCGLRWAPDGRH 244 (420)
T ss_dssp EEEE------------ECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTS--SSCEEEEEECCSSCEEEEEECTTSSE
T ss_pred EEEE------------EeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecc--cceeeEEecccccceeeeeecCCCCe
Confidence 4332 23566788888774 67999999999999999843 34556778899999999999999999
Q ss_pred EEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEE-EE-EecCCeEEEEECCCCc
Q psy9598 678 FVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVI-TA-INFNFQIKIWDAFNGD 755 (1915)
Q Consensus 678 L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~-t~-s~~Dg~I~vwD~~tg~ 755 (1915)
|++++.||.|+||++.++.... ........+...|.+++|+|.+..++ ++ ++.|++|++||+.++.
T Consensus 245 l~s~~~D~~v~i~~~~~~~~~~------------~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~ 312 (420)
T 4gga_A 245 LASGGNDNLVNVWPSAPGEGGW------------VPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGA 312 (420)
T ss_dssp EEEEETTSCEEEEESSCCSSCS------------CCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTE
T ss_pred eeeeeccccceEEeeccccccc------------eeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccc
Confidence 9999999999999998765211 11122345778899999999766544 43 3358999999999999
Q ss_pred eEEEeeCCCCCeEEEEEccCCCCEEEEEe--cCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEEe
Q psy9598 756 LVQVLKGHTNEVFVLESHPFDSRVLLSAG--HDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTD 833 (1915)
Q Consensus 756 ~i~~l~gH~~~V~sl~~sp~dg~~LaSgs--~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~ 833 (1915)
++..+..|. .|.++.|++ ++..|++++ .||.|+|||+.++++ +..+. .|.+.|++++|+|||.+||+|+
T Consensus 313 ~~~~~~~~~-~v~~~~~~~-~~~~lv~~sg~~d~~I~iwd~~~~~~--v~~l~-----gH~~~V~~l~~spdg~~l~S~s 383 (420)
T 4gga_A 313 CLSAVDAHS-QVCSILWSP-HYKELISGHGFAQNQLVIWKYPTMAK--VAELK-----GHTSRVLSLTMSPDGATVASAA 383 (420)
T ss_dssp EEEEEECSS-CEEEEEEET-TTTEEEEEECTTTCCEEEEETTTCCE--EEEEC-----CCSSCEEEEEECTTSSCEEEEE
T ss_pred cceeecccc-ceeeeeecC-CCCeEEEEEecCCCEEEEEECCCCcE--EEEEc-----CCCCCEEEEEEcCCCCEEEEEe
Confidence 999998765 588999999 777777664 699999999999888 66654 5778999999999999999999
Q ss_pred CCCeEEEEeCCCCcccc
Q psy9598 834 SYGHLLVYGLGGFKRPQ 850 (1915)
Q Consensus 834 ~dG~I~Iwdl~s~~~~~ 850 (1915)
.||+|+||++....+..
T Consensus 384 ~D~tvriWdv~~~~~~~ 400 (420)
T 4gga_A 384 ADETLRLWRCFELDPAR 400 (420)
T ss_dssp TTTEEEEECCSCSSCC-
T ss_pred cCCeEEEEECCCCCccc
Confidence 99999999997655443
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-29 Score=313.23 Aligned_cols=265 Identities=22% Similarity=0.316 Sum_probs=218.2
Q ss_pred CcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECC--CCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCC
Q psy9598 508 GKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQ--TLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTD 585 (1915)
Q Consensus 508 g~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~--tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~D 585 (1915)
|.++..+.+|.+.|++|+|+|++.+||+|+.||.|+|||+. ++..+..+.+|.+.|++++|++.. ++.+|++|+.|
T Consensus 1 G~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~~~l~s~~~d 78 (379)
T 3jrp_A 1 GSMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK--FGTILASCSYD 78 (379)
T ss_dssp ----CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGG--GCSEEEEEETT
T ss_pred CCccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCC--CCCEEEEeccC
Confidence 45677889999999999999999999999999999999998 667788899999999999998742 35899999999
Q ss_pred CeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCC--CcEEEEEeCCCeEEEEEecCCCCCceeEEeccCC
Q psy9598 586 GCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPG--GLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHS 663 (1915)
Q Consensus 586 gtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspd--g~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~ 663 (1915)
|.|++||+.++..... ..+..|...|.+++|+|+ +.+|++|+.||.|++||+.... ......+.+|.
T Consensus 79 g~v~iwd~~~~~~~~~----------~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~ 147 (379)
T 3jrp_A 79 GKVLIWKEENGRWSQI----------AVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENG-TTSPIIIDAHA 147 (379)
T ss_dssp SCEEEEEEETTEEEEE----------EEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTS-CCCEEEEECCT
T ss_pred CEEEEEEcCCCceeEe----------eeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCC-ceeeEEecCCC
Confidence 9999999987642111 123356788999999999 9999999999999999995432 33445678899
Q ss_pred CCeeEEEEcC-------------CCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEEC
Q psy9598 664 DKVDSIQWSH-------------SHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWD 730 (1915)
Q Consensus 664 ~~V~sl~fsp-------------dg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~s 730 (1915)
..|.+++|+| ++.+|++|+.||.|++||+.++...... ......|...|.+++|+
T Consensus 148 ~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~------------~~~~~~h~~~v~~~~~s 215 (379)
T 3jrp_A 148 IGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVL------------ESTLEGHSDWVRDVAWS 215 (379)
T ss_dssp TCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEE------------EEEECCCSSCEEEEEEC
T ss_pred CceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceee------------EEEEecccCcEeEEEEC
Confidence 9999999999 6999999999999999999876522111 11233577889999999
Q ss_pred CC---CCEEEEEEecCCeEEEEECCCCc---eEEEe--eCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCcc
Q psy9598 731 AS---DRWVITAINFNFQIKIWDAFNGD---LVQVL--KGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQ 799 (1915)
Q Consensus 731 pd---g~~L~t~s~~Dg~I~vwD~~tg~---~i~~l--~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~ 799 (1915)
|+ +.+|++++. ||.|+|||+.++. ....+ ..|...|++++|+| ++.+|++++.||.|+||++..+..
T Consensus 216 p~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~dg~i~iw~~~~~~~ 290 (379)
T 3jrp_A 216 PTVLLRSYLASVSQ-DRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSL-SGNVLALSGGDNKVTLWKENLEGK 290 (379)
T ss_dssp CCCSSSEEEEEEET-TSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECS-SSCCEEEEESSSSEEEEEEEETTE
T ss_pred CCCCCCCeEEEEeC-CCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcC-CCCEEEEecCCCcEEEEeCCCCCc
Confidence 99 888988888 9999999998864 22333 34889999999999 999999999999999999986544
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=99.97 E-value=7.3e-30 Score=310.57 Aligned_cols=256 Identities=20% Similarity=0.274 Sum_probs=205.4
Q ss_pred EEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCc--eEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEE
Q psy9598 513 TLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLA--PISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGF 590 (1915)
Q Consensus 513 ~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~--~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~i 590 (1915)
.+.+|.+.|++++|+++|++||+|+.|++|+|||+.++. ++..+.+|.+.|++++|++.. ++.+|++|+.|++|++
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~--~~~~l~s~s~D~~v~i 85 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPM--YGNILASCSYDRKVII 85 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGG--GSSCEEEEETTSCEEE
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCC--CCCEEEEEECCCEEEE
Confidence 467999999999999999999999999999999998875 467899999999999998631 3589999999999999
Q ss_pred EecccCccccceeccCccccccccCCCCCceEEEEECCC--CcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeE
Q psy9598 591 WKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPG--GLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDS 668 (1915)
Q Consensus 591 WDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspd--g~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~s 668 (1915)
||+.++..... ..+..|...|.+++|+|+ |.+|++|+.||.|++||+...........+.+|...|.+
T Consensus 86 Wd~~~~~~~~~----------~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~ 155 (316)
T 3bg1_A 86 WREENGTWEKS----------HEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNA 155 (316)
T ss_dssp ECCSSSCCCEE----------EEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCC
T ss_pred EECCCCcceEE----------EEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcce
Confidence 99987632111 123467789999999998 789999999999999999543222223456789999999
Q ss_pred EEEcCC-----------------CCEEEEEeCCCcEEEEEccCCc-eEEeeecccccCCCCccccccccccccEEEEEEC
Q psy9598 669 IQWSHS-----------------HLRFVSGSRDGTALIWYYKCSQ-WRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWD 730 (1915)
Q Consensus 669 l~fspd-----------------g~~L~sgs~DG~I~IWDl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~s 730 (1915)
++|+|+ +.+|++|+.||+|+|||+.... +.. .....+|...|.+++|+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~--------------~~~l~~h~~~V~~v~~s 221 (316)
T 3bg1_A 156 VSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKE--------------EQKLEAHSDWVRDVAWA 221 (316)
T ss_dssp CEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEE--------------EECCBCCSSCEEEEECC
T ss_pred EEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccce--------------eeecccCCCceEEEEec
Confidence 999997 4689999999999999987542 111 11234578899999999
Q ss_pred CCC----CEEEEEEecCCeEEEEECCCC---c-eEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCC
Q psy9598 731 ASD----RWVITAINFNFQIKIWDAFNG---D-LVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILS 796 (1915)
Q Consensus 731 pdg----~~L~t~s~~Dg~I~vwD~~tg---~-~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s 796 (1915)
|++ .+|++++. |++|+||++.+. . ....+.+|...|++++|+| ++.+|++|+.||+|+||+...
T Consensus 222 p~~~~~~~~las~s~-D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp-~g~~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 222 PSIGLPTSTIASCSQ-DGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSI-TANILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp CCSSCSCCEEEEEET-TCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECT-TTCCEEEEESSSCEEEEEECT
T ss_pred CCCCCCCceEEEEcC-CCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcC-CCCEEEEEcCCCeEEEEEECC
Confidence 987 78888888 999999998763 1 2345567899999999999 999999999999999999853
|
| >3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.9e-31 Score=311.27 Aligned_cols=185 Identities=24% Similarity=0.419 Sum_probs=152.2
Q ss_pred ChHHHHhhcccccCCHHHHHHHHHHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHhcCCCCCCCcchhhhhccccCCCCCc
Q psy9598 1 LTTLRARFQNRFYRRITSAQFDVRYLAANAEKFNEPHSNIVKYARIITDLLLRIIKEPNPVDVPVVYHELLQNYETSSSE 80 (1915)
Q Consensus 1 L~tI~~kl~~~~Y~~~~ef~~D~~li~~Na~~yN~p~s~I~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (1915)
|+||++||+++.|.++++|++||+|||+||++||+++|.|+.+|..|.+++.+.+++... .+...
T Consensus 90 L~tIk~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~i~~~A~~L~~~~~~~~~~~~~--------~~~~~------- 154 (292)
T 3aad_A 90 LQTLRENVRKRLYPSREEFREHLELIVKNSATYNGPKHSLTQISQSMLDLCDEKLKEKED--------KLARL------- 154 (292)
T ss_dssp HHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHTCSSSHHHHHHTHHHHTTTTTGGGSHH--------HHHHH-------
T ss_pred HHHHHHHhhCCCcCCHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHhhhhcchh--------hhhhh-------
Confidence 689999999999999999999999999999999999999999999999998887765421 01000
Q ss_pred ccccccccccccccCCCCcchhhhhhhhccccCCchhHHHHHHHHH-HHHhcCCCCCCCCCCCCCCCCCCccccCCCcCC
Q psy9598 81 EEEEEDSKSRQRRVRPTAVTRAQREAMNQKKLKRPFNWKNECREVL-ETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMD 159 (1915)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il-~~l~~~~~~~~F~~pvd~~~~pdY~~iIk~Pmd 159 (1915)
.+...|...... ...+...+..++ ..|++++.++||++|||...+||||+||++|||
T Consensus 155 ----------e~~i~Pl~dd~~------------~~~~~~~l~~i~~~~l~~~~~s~~F~~pvd~~~~pdY~~iIk~Pmd 212 (292)
T 3aad_A 155 ----------EKAINPLLDDDD------------QVAFSFILDNIVTQKMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMD 212 (292)
T ss_dssp ----------HHTTSSSTTCHH------------HHHHHHHHHHHHHHTGGGSTTCGGGTSCCCTTTSTTHHHHCSSCCC
T ss_pred ----------hhccccccccch------------hHHHHHHHHHHhhhhhhcCcchhHHHhcccccccccHHHHcCCcCC
Confidence 000000000000 012333445544 458899999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9598 160 LGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQNKRSKIYIMTTRLSEFAEEHLRRLTVRWN 223 (1915)
Q Consensus 160 l~ti~~kl~~~~Y~~~~~f~~D~~Lif~N~~~yN~~~~s~i~~~a~~l~~~f~~~~~~~~~~~~ 223 (1915)
|+||++||.++.|.++++|..||+|||.||++||+++ |.||.+|..|++.|++.++.+...+.
T Consensus 213 L~tI~~kl~~~~Y~s~~~f~~D~~Li~~Na~~yN~~~-s~i~~~A~~L~~~~~~~~~~~~~~l~ 275 (292)
T 3aad_A 213 LETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPE-SQYTKTAQEIVNVCYQTLTEYDEHLT 275 (292)
T ss_dssp HHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHCTT-SHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999976 99999999999999999999887764
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.97 E-value=6.6e-29 Score=303.56 Aligned_cols=286 Identities=16% Similarity=0.087 Sum_probs=236.4
Q ss_pred EEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCc---eEEEeecCCCCeEEEEeccCccCCCc-EEEEEeCCCe
Q psy9598 512 ATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLA---PISVLVGHQGIITGVNFCPLEVNGFN-YLASTSTDGC 587 (1915)
Q Consensus 512 ~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~---~~~~l~~h~~~V~sl~fsp~~~~d~~-~L~sgs~Dgt 587 (1915)
....+|.+.|++++|+|++.+|++|+.|+.|+||++.++. ....+.+|...|++++|+|. +. +|++|+.||.
T Consensus 5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~~l~~~~~dg~ 80 (342)
T 1yfq_A 5 QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDN----TDLQIYVGTVQGE 80 (342)
T ss_dssp ECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEES----SSEEEEEEETTSC
T ss_pred ecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCC----CCcEEEEEcCCCe
Confidence 3446899999999999999999999999999999998877 34556689999999999994 48 9999999999
Q ss_pred EEEEec-ccCccccceeccCccccccccCC--CCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCC------CceeEE
Q psy9598 588 IGFWKY-KLDIDISKTVFHEPVMFNERIRP--GNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDS------PLGILE 658 (1915)
Q Consensus 588 I~iWDl-~~~~~~~~~~~~~~~~~~~~~~~--~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~------~~~i~~ 658 (1915)
|++||+ .++.. ..+.. |...|.+++|+| +.+|++|+.||.|++||+..... ...+..
T Consensus 81 i~~wd~~~~~~~-------------~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 146 (342)
T 1yfq_A 81 ILKVDLIGSPSF-------------QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNN 146 (342)
T ss_dssp EEEECSSSSSSE-------------EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSS
T ss_pred EEEEEeccCCce-------------EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeE
Confidence 999999 76632 12234 778999999999 99999999999999999853100 122223
Q ss_pred eccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccC-CceEEeeecccccCCCCccccccccccccEEEEEECC-CCCEE
Q psy9598 659 VEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKC-SQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDA-SDRWV 736 (1915)
Q Consensus 659 l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~sp-dg~~L 736 (1915)
+. |...|.+++|++++ |++++.||.|++||+.+ +.... ......+...|.+++|+| ++.+|
T Consensus 147 ~~-~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~--------------~~~~~~~~~~i~~i~~~~~~~~~l 209 (342)
T 1yfq_A 147 TK-VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNG--------------TIEESGLKYQIRDVALLPKEQEGY 209 (342)
T ss_dssp SS-SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCC--------------EEEECSCSSCEEEEEECSGGGCEE
T ss_pred Ee-eCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccc--------------eeeecCCCCceeEEEECCCCCCEE
Confidence 33 88999999999887 99999999999999987 44211 011223566899999999 99999
Q ss_pred EEEEecCCeEEEEECCCC------ceEEEeeCCCC---------CeEEEEEccCCCCEEEEEecCceEEEEECCCCcccc
Q psy9598 737 ITAINFNFQIKIWDAFNG------DLVQVLKGHTN---------EVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRG 801 (1915)
Q Consensus 737 ~t~s~~Dg~I~vwD~~tg------~~i~~l~gH~~---------~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~ 801 (1915)
++++. ||.|++|++... ..+..+.+|.. .|++++|+| ++.+|++|+.||.|+|||+.+++.
T Consensus 210 ~~~~~-dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~-- 285 (342)
T 1yfq_A 210 ACSSI-DGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSP-RHKFLYTAGSDGIISCWNLQTRKK-- 285 (342)
T ss_dssp EEEET-TSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECT-TTCCEEEEETTSCEEEEETTTTEE--
T ss_pred EEEec-CCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcC-CCCEEEEecCCceEEEEcCccHhH--
Confidence 99998 999999999887 88889998865 999999999 999999999999999999998877
Q ss_pred ceeeeeeecCCCCcceEEEEEcCCCCEEEEEeCCCe-EEEEe
Q psy9598 802 YKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGH-LLVYG 842 (1915)
Q Consensus 802 ~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~dG~-I~Iwd 842 (1915)
+..+. ++|.+.|.+++ |+|.+|++++.||. ...|.
T Consensus 286 ~~~~~----~~h~~~v~~~~--~~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 286 IKNFA----KFNEDSVVKIA--CSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp EEECC----CCSSSEEEEEE--ECSSEEEEEEECTHHHHCSS
T ss_pred hhhhh----cccCCCceEec--CCCCeEEEEecCCccccccc
Confidence 55443 33378899999 99999999999998 44444
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-30 Score=328.89 Aligned_cols=272 Identities=12% Similarity=0.086 Sum_probs=211.4
Q ss_pred CCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEE
Q psy9598 475 HLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPIS 554 (1915)
Q Consensus 475 H~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~ 554 (1915)
-...|.+|+|+|||++||||+.|++|+ |...++ .+.||...|.+++|+|+| .++++.+|+.... .+.
T Consensus 14 ~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~---~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~-~~~ 80 (588)
T 2j04_A 14 FEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAK---DINCNSKNLFHVKEFPLE-------FENKLDFELAQQN-GLL 80 (588)
T ss_dssp CSSSSCCEEECTTSCEEEECSSSEEEE--EECCCS---CCSSBGGGTEEEEEECCC-------CCCTTTTSCCCSS-CSS
T ss_pred hhccEEEEEECCCCCEEEEEcCCceee--cccccc---eecCCCccEEEEEECCCC-------CcceEEEEeCCCc-eEe
Confidence 357899999999999999999999999 766665 447999999999999998 4666666654322 222
Q ss_pred EeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEE
Q psy9598 555 VLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLA 634 (1915)
Q Consensus 555 ~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~La 634 (1915)
.+ .|...|.+++|+| ++.+|++++.||+|++||..+ .+..+. +.. .-....|.+++|||+|++|+
T Consensus 81 ~~-~~~~~V~~vawSP----dG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~-------~~~~~sv~svafSPDG~~LA 145 (588)
T 2j04_A 81 NS-QPVCYPRVCKPSP----IDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKG-------NLSSRTYHCFEWNPIESSIV 145 (588)
T ss_dssp TT-SCSCCEEEEEECS----SSSCEEEEETTSCEEEEETTE--EEEECC-CSS-------CSTTTCEEEEEECSSSSCEE
T ss_pred ec-CCCCcEEEEEECC----CCCEEEEEeCCCcEEEEeCCc--eeeecc-CCC-------ccccccEEEEEEcCCCCEEE
Confidence 22 5688999999999 459999999999999999543 111111 100 00013599999999999999
Q ss_pred EEeCCCeEEEEEecCCCC--C--ceeEEe----ccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccc
Q psy9598 635 TGSGDHHVRVYKMDGVDS--P--LGILEV----EEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNT 706 (1915)
Q Consensus 635 sgs~Dg~I~IwDl~~~~~--~--~~i~~l----~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~ 706 (1915)
+|+.||+|+|||+.+... + ..+..+ .+|.+.|.+|+|+|+| |++++.|++|++||+..+....
T Consensus 146 sgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~------- 216 (588)
T 2j04_A 146 VGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQP------- 216 (588)
T ss_dssp EEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCC-------
T ss_pred EEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCcccc-------
Confidence 999999999999964321 1 134555 6788899999999999 8899999999999987765210
Q ss_pred cCCCCcccccc-ccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCCCeEEEEE--ccCCCCEEEEE
Q psy9598 707 CLPHTKETSDE-TNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLES--HPFDSRVLLSA 783 (1915)
Q Consensus 707 ~~~~~~~~~~~-~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~--sp~dg~~LaSg 783 (1915)
..... ..|...|.+++|+ |..|++++ ++.|++||+.++.......+|.+.|+.++| +| ++..|+++
T Consensus 217 ------~~~tL~~~h~~~V~svaFs--g~~LASa~--~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~-d~~~La~a 285 (588)
T 2j04_A 217 ------VSRMIQNASRRKITDLKIV--DYKVVLTC--PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEK-ESTILLMS 285 (588)
T ss_dssp ------CEEEEECCCSSCCCCEEEE--TTEEEEEC--SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCS-SCEEEEEC
T ss_pred ------ceeeecccccCcEEEEEEE--CCEEEEEe--CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCC-CCCEEEEE
Confidence 00001 2366789999999 68888775 699999999988875555589999999999 99 88999999
Q ss_pred ecCceEEEEECC
Q psy9598 784 GHDGLIIIWDIL 795 (1915)
Q Consensus 784 s~DG~I~IWdl~ 795 (1915)
+.||+ ++|...
T Consensus 286 ~edG~-klw~~d 296 (588)
T 2j04_A 286 NKTSY-KVLLED 296 (588)
T ss_dssp SSCEE-EEEESS
T ss_pred cCCCC-EEEeec
Confidence 99999 999975
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.5e-28 Score=293.59 Aligned_cols=283 Identities=18% Similarity=0.289 Sum_probs=228.6
Q ss_pred EEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEee--cCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCcc
Q psy9598 521 ISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLV--GHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDID 598 (1915)
Q Consensus 521 I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~--~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~ 598 (1915)
+++|+||+++ +||+|. |++|+|||+.+++++..+. +|...|++|+|+|. +++|++|+.||+|++||+.++..
T Consensus 28 ~~~l~WS~~~-~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~----~~~l~sgs~Dg~v~iw~~~~~~~ 101 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKE----GNYLAVGTSSAEVQLWDVQQQKR 101 (318)
T ss_dssp CBCEEECTTS-EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTT----SSEEEEEETTSEEEEEETTTTEE
T ss_pred ceEEEECCCC-EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCC----CCEEEEEECCCcEEEeecCCcee
Confidence 5789999886 777765 9999999999999888775 67788999999994 58999999999999999998865
Q ss_pred ccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEE
Q psy9598 599 ISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRF 678 (1915)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L 678 (1915)
+.... +|...+.++++ ++..|++|+.++.+++|+... ....+..+.+|...+.++.|++++.+|
T Consensus 102 ~~~~~------------~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l 165 (318)
T 4ggc_A 102 LRNMT------------SHSARVGSLSW--NSYILSSGSRSGHIHHHDVRV--AEHHVATLSGHSQEVCGLRWAPDGRHL 165 (318)
T ss_dssp EEEEE------------CCSSCEEEEEE--ETTEEEEEETTSEEEEEETTS--SSCEEEEEECCSSCEEEEEECTTSSEE
T ss_pred EEEec------------CccceEEEeec--CCCEEEEEecCCceEeeecCC--CceeEEEEcCccCceEEEEEcCCCCEE
Confidence 43332 44566665554 567999999999999999743 345567788999999999999999999
Q ss_pred EEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEE--EEecCCeEEEEECCCCce
Q psy9598 679 VSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVIT--AINFNFQIKIWDAFNGDL 756 (1915)
Q Consensus 679 ~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t--~s~~Dg~I~vwD~~tg~~ 756 (1915)
++++.||+|+|||+.+++... ........+...|.++++++++..++. ++..++.|++||...+..
T Consensus 166 ~s~~~d~~i~iwd~~~~~~~~------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~ 233 (318)
T 4ggc_A 166 ASGGNDNLVNVWPSAPGEGGW------------VPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGAC 233 (318)
T ss_dssp EEEETTSCEEEEESSCBTTBS------------CCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCE
T ss_pred EEEecCcceeEEECCCCcccc------------cceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccc
Confidence 999999999999998765211 111223346678999999998765442 333488999999998887
Q ss_pred EEEeeCCCCCeEEEEEccCCCCEEEEEe--cCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEEeC
Q psy9598 757 VQVLKGHTNEVFVLESHPFDSRVLLSAG--HDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDS 834 (1915)
Q Consensus 757 i~~l~gH~~~V~sl~~sp~dg~~LaSgs--~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~ 834 (1915)
..... |...+..+.|+| ++..+++++ .||.|+|||+.++++ +..+. .|.+.|++++|+|||.+||+|+.
T Consensus 234 ~~~~~-~~~~v~~~~~~~-~~~~~~~~sg~~d~~i~iwd~~~~~~--~~~l~-----gH~~~V~~l~~spdg~~l~S~s~ 304 (318)
T 4ggc_A 234 LSAVD-AHSQVCSILWSP-HYKELISGHGFAQNQLVIWKYPTMAK--VAELK-----GHTSRVLSLTMSPDGATVASAAA 304 (318)
T ss_dssp EEEEE-CSSCEEEEEEET-TTTEEEEEECTTTCCEEEEETTTCCE--EEEEC-----CCSSCEEEEEECTTSSCEEEEET
T ss_pred ccccc-ceeeeeeeeecc-cccceEEEEEcCCCEEEEEECCCCcE--EEEEc-----CCCCCEEEEEEcCCCCEEEEEec
Confidence 76654 666799999999 777666554 799999999999888 66654 57789999999999999999999
Q ss_pred CCeEEEEeCCCC
Q psy9598 835 YGHLLVYGLGGF 846 (1915)
Q Consensus 835 dG~I~Iwdl~s~ 846 (1915)
||+|+||++...
T Consensus 305 D~~v~iWd~~~~ 316 (318)
T 4ggc_A 305 DETLRLWRCFEL 316 (318)
T ss_dssp TTEEEEECCSCC
T ss_pred CCeEEEEECCCC
Confidence 999999998764
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-28 Score=313.36 Aligned_cols=283 Identities=20% Similarity=0.332 Sum_probs=233.9
Q ss_pred eCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecc
Q psy9598 515 RGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYK 594 (1915)
Q Consensus 515 ~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~ 594 (1915)
.+|...|+|++| ++.+|++|+.||+|+|||+.++..+..+.+|.+.|++++|.. .+|++|+.||+|++||+.
T Consensus 130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~------~~l~sg~~dg~i~vwd~~ 201 (435)
T 1p22_A 130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDE------RVIITGSSDSTVRVWDVN 201 (435)
T ss_dssp CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECCS------SEEEEEETTSCEEEEESS
T ss_pred cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEECC------CEEEEEcCCCeEEEEECC
Confidence 457778998887 788999999999999999999999999999999999999943 799999999999999998
Q ss_pred cCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCC
Q psy9598 595 LDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHS 674 (1915)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspd 674 (1915)
++..+.. +..|...|.+++|++ .+|++|+.||.|++||+...........+.+|...|.+++| +
T Consensus 202 ~~~~~~~------------~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~ 265 (435)
T 1p22_A 202 TGEMLNT------------LIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--D 265 (435)
T ss_dssp SCCEEEE------------ECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--E
T ss_pred CCcEEEE------------EcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--C
Confidence 8754332 235678899999974 59999999999999999654444444678899999999999 6
Q ss_pred CCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCC
Q psy9598 675 HLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNG 754 (1915)
Q Consensus 675 g~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg 754 (1915)
+.+|++|+.||.|++||+.++...... ..|...|.+++| ++.+|++++. ||.|++||+.++
T Consensus 266 ~~~l~s~~~dg~i~vwd~~~~~~~~~~----------------~~~~~~v~~~~~--~~~~l~~g~~-dg~i~iwd~~~~ 326 (435)
T 1p22_A 266 DKYIVSASGDRTIKVWNTSTCEFVRTL----------------NGHKRGIACLQY--RDRLVVSGSS-DNTIRLWDIECG 326 (435)
T ss_dssp TTEEEEEETTSEEEEEETTTCCEEEEE----------------ECCSSCEEEEEE--ETTEEEEEET-TSCEEEEETTTC
T ss_pred CCEEEEEeCCCeEEEEECCcCcEEEEE----------------cCCCCcEEEEEe--CCCEEEEEeC-CCeEEEEECCCC
Confidence 889999999999999999988754422 236677889988 4789999988 999999999999
Q ss_pred ceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccc-------cceeeeeeecCCCCcceEEEEEcCCCC
Q psy9598 755 DLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQR-------GYKWFHNIVEGQGEGALFDGKWSPDGT 827 (1915)
Q Consensus 755 ~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~-------~~~~~~~~~~~~~~~~V~~vafSpdg~ 827 (1915)
.++..+.+|...|.+++| ++.+|++|+.||.|+|||+.++... .+..+ ..|.+.|.+++| ++.
T Consensus 327 ~~~~~~~~h~~~v~~~~~---~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~-----~~h~~~v~~l~~--~~~ 396 (435)
T 1p22_A 327 ACLRVLEGHEELVRCIRF---DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTL-----VEHSGRVFRLQF--DEF 396 (435)
T ss_dssp CEEEEECCCSSCEEEEEC---CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEE-----CCCSSCCCCEEE--CSS
T ss_pred CEEEEEeCCcCcEEEEEe---cCCEEEEEeCCCcEEEEECCCCCCccccccchheeec-----cCCCCCeEEEEe--CCC
Confidence 999999999999999998 4689999999999999999766510 02222 256789999999 789
Q ss_pred EEEEEeCCCeEEEEeCCCCcccc
Q psy9598 828 TCALTDSYGHLLVYGLGGFKRPQ 850 (1915)
Q Consensus 828 ~Lasg~~dG~I~Iwdl~s~~~~~ 850 (1915)
+|++|+.||.|+||++.+.....
T Consensus 397 ~l~s~s~Dg~i~iwd~~~~~~~~ 419 (435)
T 1p22_A 397 QIVSSSHDDTILIWDFLNDPAAQ 419 (435)
T ss_dssp CEEECCSSSEEEEEC--------
T ss_pred EEEEEeCCCEEEEEECCCCCCcc
Confidence 99999999999999998765443
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-29 Score=320.87 Aligned_cols=310 Identities=16% Similarity=0.192 Sum_probs=240.3
Q ss_pred EcCCCCEEEEEECCCcEEEEECCCCcEEEEE-eCCCCCEEEEEEeC-CCCEEEEEeCCCcEEEEECCC---Cc---eEEE
Q psy9598 484 FDKLGEVIVTGADDLLIKLWRARDGKLLATL-RGCSGEISDIAIDN-RNILLAAGTVDKTIRIWNLQT---LA---PISV 555 (1915)
Q Consensus 484 fspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l-~gH~~~I~~Lafsp-dg~~LaSgs~DgtIrVWDl~t---g~---~~~~ 555 (1915)
|+|++..+++++ +|+ .+++++..+ .+|.+.|++|+|+| ++.+||+|+.||+|+|||+.+ +. +...
T Consensus 35 f~~~~~~~~~~~------~w~-~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~ 107 (437)
T 3gre_A 35 FGPIQEIVRSPN------MGN-LRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLT 107 (437)
T ss_dssp GCCCCCCCCCCC------GGG-CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEE
T ss_pred cCCccccccccc------ccc-ccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeee
Confidence 678888877765 488 578899999 89999999999999 999999999999999999976 43 2333
Q ss_pred eecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecc---cCccccceeccCccccccccCC--CCCceEEEE--ECC
Q psy9598 556 LVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYK---LDIDISKTVFHEPVMFNERIRP--GNAHILCSS--FSP 628 (1915)
Q Consensus 556 l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~---~~~~~~~~~~~~~~~~~~~~~~--~~~~V~~l~--fsp 628 (1915)
+ +|.+.|++++|+|. +.+|++|+.||+|++||+. .+........+. .....+.+ +...+.++. +++
T Consensus 108 ~-~h~~~v~~~~~~~~----~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~--i~~~~~~~~~~~~~~~~~~~~~~~ 180 (437)
T 3gre_A 108 Y-DCSSTVTQITMIPN----FDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCEC--IRKINLKNFGKNEYAVRMRAFVNE 180 (437)
T ss_dssp E-ECSSCEEEEEECTT----SSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEE--EEEEEGGGGSSCCCEEEEEEEECS
T ss_pred c-cCCCCEEEEEEeCC----CCEEEEEeCCCEEEEEEeccccCCceeeccccce--eEEEEccCcccccCceEEEEEEcC
Confidence 3 59999999999984 4899999999999999995 443332222220 00111112 557788888 678
Q ss_pred CCcEEEEEeCCCeEEEEEecCCCCCceeEEecc--CCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccc
Q psy9598 629 GGLFLATGSGDHHVRVYKMDGVDSPLGILEVEE--HSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNT 706 (1915)
Q Consensus 629 dg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~--h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~ 706 (1915)
++.+|++|+.||.|++||+. ....+..+.+ |.+.|.+++|+|++.+|++|+.||.|++||++++.......
T Consensus 181 ~~~~l~~~~~d~~i~iwd~~---~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---- 253 (437)
T 3gre_A 181 EKSLLVALTNLSRVIIFDIR---TLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWS---- 253 (437)
T ss_dssp SCEEEEEEETTSEEEEEETT---TCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEB----
T ss_pred CCCEEEEEeCCCeEEEEeCC---CCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEe----
Confidence 99999999999999999994 3455666777 89999999999999999999999999999999876543211
Q ss_pred cCCCCccccccccccccEEEEEECC----CCCEEEEEEecCCeEEEEECCCCceEEEeeCC-------------------
Q psy9598 707 CLPHTKETSDETNKKIKVTMVAWDA----SDRWVITAINFNFQIKIWDAFNGDLVQVLKGH------------------- 763 (1915)
Q Consensus 707 ~~~~~~~~~~~~~~~~~V~~va~sp----dg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH------------------- 763 (1915)
..+...|.+++|+| ++.+|++++. ||.|+|||+.+++++..+.+|
T Consensus 254 -----------~~~~~~v~~~~~~~~~s~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 321 (437)
T 3gre_A 254 -----------FGDHAPITHVEVCQFYGKNSVIVVGGSS-KTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEEL 321 (437)
T ss_dssp -----------CTTCEEEEEEEECTTTCTTEEEEEEEST-TEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGC
T ss_pred -----------cCCCCceEEEEeccccCCCccEEEEEcC-CCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccc
Confidence 13556899996664 5778888887 999999999999998888755
Q ss_pred -------CCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEE
Q psy9598 764 -------TNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALT 832 (1915)
Q Consensus 764 -------~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg 832 (1915)
...|++++|++ +.+|++|+.||.|++||+.+++. +..+... ......+..+.+++...+++..
T Consensus 322 ~~~~~~~~~~v~~l~~~~--~~~l~s~~~d~~i~~wd~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 391 (437)
T 3gre_A 322 NFCGIRSLNALSTISVSN--DKILLTDEATSSIVMFSLNELSS--SKAVISP--SRFSDVFIPTQVTANLTMLLRK 391 (437)
T ss_dssp CCCCCCSGGGGCCEEEET--TEEEEEEGGGTEEEEEETTCGGG--CEEEECC----CCCEEEEEEEETTEEEEEEE
T ss_pred eecccccCCceEEEEECC--ceEEEecCCCCeEEEEECCCccc--ceEEecc--cccCceEEEEEeecceEEEEEe
Confidence 44577888883 58999999999999999999887 5555411 1123456667777776666655
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=9.9e-29 Score=304.14 Aligned_cols=297 Identities=16% Similarity=0.142 Sum_probs=238.1
Q ss_pred EEECCCCcEEEEEeCCCCCEEEEEEeCC---CCEEEEEeCCCcEEEEECCC-CceE-EEeecCCCCeEEEEeccCccCCC
Q psy9598 502 LWRARDGKLLATLRGCSGEISDIAIDNR---NILLAAGTVDKTIRIWNLQT-LAPI-SVLVGHQGIITGVNFCPLEVNGF 576 (1915)
Q Consensus 502 IWd~~tg~~~~~l~gH~~~I~~Lafspd---g~~LaSgs~DgtIrVWDl~t-g~~~-~~l~~h~~~V~sl~fsp~~~~d~ 576 (1915)
.|+......+..+.+|.+.|++|+|+|+ |.+|++|+.||.|+|||+.+ +..+ ..+.+|.+.|++++|+|+ +
T Consensus 23 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~----~ 98 (368)
T 3mmy_A 23 TDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDD----G 98 (368)
T ss_dssp CCSSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTT----S
T ss_pred cCCCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcC----C
Confidence 3456667788889999999999999999 59999999999999999997 5555 788899999999999994 5
Q ss_pred cEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEE--CCCCcEEEEEeCCCeEEEEEecCCCCCc
Q psy9598 577 NYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSF--SPGGLFLATGSGDHHVRVYKMDGVDSPL 654 (1915)
Q Consensus 577 ~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~f--spdg~~Lasgs~Dg~I~IwDl~~~~~~~ 654 (1915)
.+|++|+.||.|++||+.++.... ...|...|.+++| ++++.+|++|+.||.|++||+.. ..
T Consensus 99 ~~l~s~~~dg~v~iwd~~~~~~~~-------------~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~---~~ 162 (368)
T 3mmy_A 99 SKVFTASCDKTAKMWDLSSNQAIQ-------------IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRS---SN 162 (368)
T ss_dssp SEEEEEETTSEEEEEETTTTEEEE-------------EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSC---SS
T ss_pred CEEEEEcCCCcEEEEEcCCCCcee-------------eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCC---Cc
Confidence 899999999999999998875322 1236688999999 99999999999999999999953 33
Q ss_pred eeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCC
Q psy9598 655 GILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDR 734 (1915)
Q Consensus 655 ~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~ 734 (1915)
.+..+..|. .+.++.+. +..+++++.++.+.+|++.......... .......+.++++.++..
T Consensus 163 ~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~ 225 (368)
T 3mmy_A 163 PMMVLQLPE-RCYCADVI--YPMAVVATAERGLIVYQLENQPSEFRRI--------------ESPLKHQHRCVAIFKDKQ 225 (368)
T ss_dssp CSEEEECSS-CEEEEEEE--TTEEEEEEGGGCEEEEECSSSCEEEEEC--------------CCSCSSCEEEEEEEECTT
T ss_pred EEEEEecCC-CceEEEec--CCeeEEEeCCCcEEEEEeccccchhhhc--------------cccccCCCceEEEcccCC
Confidence 445555553 56666665 4589999999999999998765332211 111223445555544443
Q ss_pred E----EEEEEecCCeEEEEECCCC---ceEEEeeCCCC------------CeEEEEEccCCCCEEEEEecCceEEEEECC
Q psy9598 735 W----VITAINFNFQIKIWDAFNG---DLVQVLKGHTN------------EVFVLESHPFDSRVLLSAGHDGLIIIWDIL 795 (1915)
Q Consensus 735 ~----L~t~s~~Dg~I~vwD~~tg---~~i~~l~gH~~------------~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~ 795 (1915)
. +++++. ||.|++|++... ..+..+.+|.. .|++++|+| ++.+|++|+.||.|+|||+.
T Consensus 226 ~~~~~~~~~~~-dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~s~~~dg~i~iwd~~ 303 (368)
T 3mmy_A 226 NKPTGFALGSI-EGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHP-VHGTLATVGSDGRFSFWDKD 303 (368)
T ss_dssp SCEEEEEEEET-TSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECT-TTCCEEEEETTSCEEEEETT
T ss_pred CCCCeEEEecC-CCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEec-CCCEEEEEccCCeEEEEECC
Confidence 3 788877 999999999987 67888888876 799999999 99999999999999999999
Q ss_pred CCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q psy9598 796 SSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLG 844 (1915)
Q Consensus 796 s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl~ 844 (1915)
++.+ +..+. .+.+.|.+++|+|+|.+||+++.||....|++-
T Consensus 304 ~~~~--~~~~~-----~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~ 345 (368)
T 3mmy_A 304 ARTK--LKTSE-----QLDQPISACCFNHNGNIFAYASSYDWSKGHEFY 345 (368)
T ss_dssp TTEE--EEECC-----CCSSCEEEEEECTTSSCEEEEECCCSTTCGGGC
T ss_pred CCcE--EEEec-----CCCCCceEEEECCCCCeEEEEeccccccccccc
Confidence 8877 55544 567899999999999999999999865555543
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.9e-29 Score=341.76 Aligned_cols=263 Identities=22% Similarity=0.310 Sum_probs=219.7
Q ss_pred eEEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECC--CCcEEEEEeCCCCCEEEEEEeCC--CCEEEEEeCCCcEEE
Q psy9598 469 HYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRAR--DGKLLATLRGCSGEISDIAIDNR--NILLAAGTVDKTIRI 544 (1915)
Q Consensus 469 ~~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~--tg~~~~~l~gH~~~I~~Lafspd--g~~LaSgs~DgtIrV 544 (1915)
..++.||.+.|+|++|+|+|.+|++|+.||.|+|||+. ++..+.++.+|.+.|++|+|+++ +.+|++|+.||+|+|
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~v 81 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI 81 (753)
T ss_dssp ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEE
T ss_pred eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEE
Confidence 34688999999999999999999999999999999998 56788899999999999999988 999999999999999
Q ss_pred EECCCCc--eEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceE
Q psy9598 545 WNLQTLA--PISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHIL 622 (1915)
Q Consensus 545 WDl~tg~--~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~ 622 (1915)
||+.++. .+..+.+|...|++++|+|.. ++.+|++|+.||+|++||+.++....... +..|...|.
T Consensus 82 wd~~~~~~~~~~~~~~h~~~V~~v~~sp~~--~~~~l~sgs~dg~I~vwdl~~~~~~~~~~----------~~~~~~~v~ 149 (753)
T 3jro_A 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHE--YGPLLLVASSDGKVSVVEFKENGTTSPII----------IDAHAIGVN 149 (753)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEEECCGG--GCSEEEEEETTSEEEEEECCSSSCCCCEE----------EECCSSCEE
T ss_pred EECCCCcccccccccCCCCCeEEEEECCCC--CCCEEEEEeCCCcEEEEEeecCCCcceeE----------eecCCCceE
Confidence 9999987 778888999999999999951 25899999999999999998874332222 235678899
Q ss_pred EEEECC-------------CCcEEEEEeCCCeEEEEEecCCCCC-ceeEEeccCCCCeeEEEEcCC---CCEEEEEeCCC
Q psy9598 623 CSSFSP-------------GGLFLATGSGDHHVRVYKMDGVDSP-LGILEVEEHSDKVDSIQWSHS---HLRFVSGSRDG 685 (1915)
Q Consensus 623 ~l~fsp-------------dg~~Lasgs~Dg~I~IwDl~~~~~~-~~i~~l~~h~~~V~sl~fspd---g~~L~sgs~DG 685 (1915)
+++|+| ++.+|++|+.||.|++||+...... ..+..+.+|.+.|.+++|+|+ +.+|++|+.||
T Consensus 150 ~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg 229 (753)
T 3jro_A 150 SASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDR 229 (753)
T ss_dssp EEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSS
T ss_pred EEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCC
Confidence 999999 5899999999999999999654322 455677899999999999999 89999999999
Q ss_pred cEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCc
Q psy9598 686 TALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGD 755 (1915)
Q Consensus 686 ~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~ 755 (1915)
.|++||+.++.... .........+...|++++|+|+|.+|++++. ||.|+||++.++.
T Consensus 230 ~I~iwd~~~~~~~~-----------~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~-Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 230 TCIIWTQDNEQGPW-----------KKTLLKEEKFPDVLWRASWSLSGNVLALSGG-DNKVTLWKENLEG 287 (753)
T ss_dssp CEEEEEESSSSSCC-----------BCCBSSSSCCSSCCCCEEECTTTCCEEEECS-SSCEECCBCCSSS
T ss_pred EEEEecCCCCCCcc-----------eeEEeccCCCCCceEEEEEcCCCCEEEEEcC-CCEEEEEecCCCC
Confidence 99999998764110 0111223446778999999999999999998 9999999998643
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.96 E-value=5.7e-29 Score=312.98 Aligned_cols=289 Identities=15% Similarity=0.156 Sum_probs=235.2
Q ss_pred cEEEEEEcCCCCEEE-EEECCCcEEEEECCCC----cEEEEEeCCCCCEEEEEEeC-CCCEEEEEeCCCcEEEEECCCC-
Q psy9598 478 AVFCVLFDKLGEVIV-TGADDLLIKLWRARDG----KLLATLRGCSGEISDIAIDN-RNILLAAGTVDKTIRIWNLQTL- 550 (1915)
Q Consensus 478 ~V~~vafspdg~~La-TGs~Dg~I~IWd~~tg----~~~~~l~gH~~~I~~Lafsp-dg~~LaSgs~DgtIrVWDl~tg- 550 (1915)
...+++++|+...++ +|+.||.|+||++... ..+..+.+|.+.|++|+|+| ++.+|++|+.||+|+|||+.++
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~ 115 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGG 115 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTC
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCC
Confidence 344688998765444 5788999999999664 23456789999999999999 9999999999999999999987
Q ss_pred ------ceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEE
Q psy9598 551 ------APISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCS 624 (1915)
Q Consensus 551 ------~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l 624 (1915)
.++..+.+|...|++++|+|.+ ..+|++|+.||+|++||+.++..+..+. ...|...|.++
T Consensus 116 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~----------~~~~~~~v~~~ 182 (402)
T 2aq5_A 116 LVLPLREPVITLEGHTKRVGIVAWHPTA---QNVLLSAGCDNVILVWDVGTGAAVLTLG----------PDVHPDTIYSV 182 (402)
T ss_dssp CSSCBCSCSEEEECCSSCEEEEEECSSB---TTEEEEEETTSCEEEEETTTTEEEEEEC----------TTTCCSCEEEE
T ss_pred CccccCCceEEecCCCCeEEEEEECcCC---CCEEEEEcCCCEEEEEECCCCCccEEEe----------cCCCCCceEEE
Confidence 6788999999999999999943 3699999999999999998875433221 03467889999
Q ss_pred EECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEe-ccCCCC-eeEEEEcCCCCEEEEE---eCCCcEEEEEccCCceEE
Q psy9598 625 SFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEV-EEHSDK-VDSIQWSHSHLRFVSG---SRDGTALIWYYKCSQWRF 699 (1915)
Q Consensus 625 ~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l-~~h~~~-V~sl~fspdg~~L~sg---s~DG~I~IWDl~~~~~~~ 699 (1915)
+|+|+|.+|++|+.||.|++||+. ....+..+ .+|.+. +.+++|++++.+|++| +.||.|++||+.+.....
T Consensus 183 ~~~~~~~~l~~~~~d~~i~iwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~ 259 (402)
T 2aq5_A 183 DWSRDGALICTSCRDKRVRVIEPR---KGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPL 259 (402)
T ss_dssp EECTTSSCEEEEETTSEEEEEETT---TTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCS
T ss_pred EECCCCCEEEEEecCCcEEEEeCC---CCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCc
Confidence 999999999999999999999994 34456666 688776 8999999999999999 799999999998765211
Q ss_pred eeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCce-EEEeeC--CCCCeEEEEEccCC
Q psy9598 700 IRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDL-VQVLKG--HTNEVFVLESHPFD 776 (1915)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~-i~~l~g--H~~~V~sl~~sp~d 776 (1915)
. .....+...+.+++|+|++.+|++++..||.|++||+.+++. +..+.. |...|.+++|+| +
T Consensus 260 ~--------------~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp-~ 324 (402)
T 2aq5_A 260 S--------------LQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMP-K 324 (402)
T ss_dssp E--------------EEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECC-G
T ss_pred e--------------EEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEec-c
Confidence 0 011224567899999999999987775599999999998874 555554 458999999999 8
Q ss_pred CCEEEEEecCceEEEEECCCCcc
Q psy9598 777 SRVLLSAGHDGLIIIWDILSSKQ 799 (1915)
Q Consensus 777 g~~LaSgs~DG~I~IWdl~s~~~ 799 (1915)
+.++++ .++.+++|++.++..
T Consensus 325 ~~~~~s--~~~~~~~~~l~~~~~ 345 (402)
T 2aq5_A 325 RGLEVN--KCEIARFYKLHERKC 345 (402)
T ss_dssp GGSCGG--GTEEEEEEEEETTEE
T ss_pred ccccee--cceeEEEEEcCCCcE
Confidence 777664 577999999987654
|
| >2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1e-29 Score=301.08 Aligned_cols=177 Identities=24% Similarity=0.311 Sum_probs=139.3
Q ss_pred ChHHHHhhcccccC-CHHHHHHHHHHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHhcCCCCCCCcchhhhhccccCCCCC
Q psy9598 1 LTTLRARFQNRFYR-RITSAQFDVRYLAANAEKFNEPHSNIVKYARIITDLLLRIIKEPNPVDVPVVYHELLQNYETSSS 79 (1915)
Q Consensus 1 L~tI~~kl~~~~Y~-~~~ef~~D~~li~~Na~~yN~p~s~I~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (1915)
|+||++|| +.|. ++++|++||+|||+||++||+++|.|+++|..|++++.+.+..... ....
T Consensus 73 L~tI~~kl--~~y~~s~~~f~~D~~li~~Na~~yN~~~s~i~~~A~~l~~~~~~~~~k~k~---------~~~~------ 135 (311)
T 2r0y_A 73 INEIKSRD--YEYEDGPSNFLLDVELLTKNCQAYNEYDSLIVKNSMQVVMLIEFEVLKAKN---------LKRN------ 135 (311)
T ss_dssp HHHHHHSC--CCSTTHHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHT---------GGGC------
T ss_pred HHHHHHHH--hcccCCHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHhhccc---------CCCC------
Confidence 68999999 3454 8999999999999999999999999999999999999886654210 0000
Q ss_pred cccccccccccccccCCCCcchhhhhhhhccccCCchhHHHHHHHHH-----------HHH-------hcCCCCCCCCCC
Q psy9598 80 EEEEEEDSKSRQRRVRPTAVTRAQREAMNQKKLKRPFNWKNECREVL-----------ETL-------WVCPDSEPFRKP 141 (1915)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il-----------~~l-------~~~~~~~~F~~p 141 (1915)
.......+ ..+...|..++ ... ..|+.++||++|
T Consensus 136 -----------------~~i~~~~k-----------~~l~~~~~~l~~~~~~~i~~~l~~~r~~k~~~~~~~~s~~F~~p 187 (311)
T 2r0y_A 136 -----------------YLINSEVK-----------AKLLHYLNKLVDATEKKINQALLGASSPKNLDDKVKLSEPFMEL 187 (311)
T ss_dssp -----------------CBCCHHHH-----------HHHHHHHHHHHHCCHHHHHHHHHGGGSCSSCCCSSCTTGGGSSC
T ss_pred -----------------CCCChHHH-----------HHHHHHHHHHHhhhHHHHHHHHhccccccccccCCccHHHHhCC
Confidence 00000000 00111122221 111 146789999999
Q ss_pred CCCCCCCCccccCCCcCCHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHH-HH
Q psy9598 142 VDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQNKRSKIYIMTTRLSEFAEEHLRRL-TV 220 (1915)
Q Consensus 142 vd~~~~pdY~~iIk~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~Lif~N~~~yN~~~~s~i~~~a~~l~~~f~~~~~~~-~~ 220 (1915)
||...+||||+||++||||+||++||+++.|.++++|.+||+|||+||++||+++ |.||.+|..|+++|+++|++. ..
T Consensus 188 vd~~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~N~~~yN~~~-s~i~~~A~~L~~~f~~~~~~~~~p 266 (311)
T 2r0y_A 188 VDKDELPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPS-ALIYKDATTLTNYFNYLIQKEFFP 266 (311)
T ss_dssp CCTTTCHHHHHHCSSCCCHHHHHHHHHHTCCCBHHHHHHHHHHHHHHHHHHSCTT-SHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred CChhhcccHHHHhCCccCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999999999999999999999976 999999999999999999983 44
Q ss_pred hhh
Q psy9598 221 RWN 223 (1915)
Q Consensus 221 ~~~ 223 (1915)
.+.
T Consensus 267 ~~~ 269 (311)
T 2r0y_A 267 ELQ 269 (311)
T ss_dssp HHH
T ss_pred cch
Confidence 443
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.1e-29 Score=316.44 Aligned_cols=325 Identities=11% Similarity=0.054 Sum_probs=242.5
Q ss_pred CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEeccc
Q psy9598 516 GCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKL 595 (1915)
Q Consensus 516 gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~ 595 (1915)
.-...|.+|+|+|||++|||++.|++|+ |...++.+ .+|...|++++|+|+ + .++.+.+|+...
T Consensus 13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l---~gh~~~v~~V~FsPd----g-------~~~~~~~~~~~~ 76 (588)
T 2j04_A 13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKDI---NCNSKNLFHVKEFPL----E-------FENKLDFELAQQ 76 (588)
T ss_dssp CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSCC---SSBGGGTEEEEEECC----C-------CCCTTTTSCCCS
T ss_pred HhhccEEEEEECCCCCEEEEEcCCceee--ccccccee---cCCCccEEEEEECCC----C-------CcceEEEEeCCC
Confidence 3467899999999999999999999999 76666544 799999999999994 2 445544444322
Q ss_pred CccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCC-----CeeEEE
Q psy9598 596 DIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSD-----KVDSIQ 670 (1915)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~-----~V~sl~ 670 (1915)
. ..+.+ .+...|.+++|||+|..||+++.||.|+||+..+ .+..+. |.. .|.+++
T Consensus 77 ~---~~~~~-----------~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~-----~l~~l~-~~~~~~~~sv~sva 136 (588)
T 2j04_A 77 N---GLLNS-----------QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK-----MLTNLD-SKGNLSSRTYHCFE 136 (588)
T ss_dssp S---CSSTT-----------SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE-----EEEECC-CSSCSTTTCEEEEE
T ss_pred c---eEeec-----------CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc-----eeeecc-CCCccccccEEEEE
Confidence 1 11111 2357899999999999999999999999999622 455556 665 499999
Q ss_pred EcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEE
Q psy9598 671 WSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWD 750 (1915)
Q Consensus 671 fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD 750 (1915)
|||+|++|++|+.||+|+|||+.++...... ............+|...|.+++|+|+| +++++. |+.|++||
T Consensus 137 fSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~-----~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~-D~tVrlWd 208 (588)
T 2j04_A 137 WNPIESSIVVGNEDGELQFFSIRKNSENTPE-----FYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALS-NNSVFSMT 208 (588)
T ss_dssp ECSSSSCEEEEETTSEEEEEECCCCTTTCCC-----CEEEEEEECSCTTCCCCEEEEEEETTE--EEEEET-TCCEEEEC
T ss_pred EcCCCCEEEEEcCCCEEEEEECCCCcccccc-----ceeeeeeecccccccccEEEEEEcCCc--EEEEeC-CCeEEEEE
Confidence 9999999999999999999999876420000 000000011123477899999999999 777777 99999999
Q ss_pred CCCCce---EEEe-eCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEE--cC
Q psy9598 751 AFNGDL---VQVL-KGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKW--SP 824 (1915)
Q Consensus 751 ~~tg~~---i~~l-~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vaf--Sp 824 (1915)
+..+.. ..++ .+|...|.+|+|+ +.+||+++ +|+|++||+.++.. .. + ..+|.+.|.+++| +|
T Consensus 209 ~~~~~~~~~~~tL~~~h~~~V~svaFs---g~~LASa~-~~tIkLWd~~~~~~--~~-~----~~gh~~~V~~va~~~s~ 277 (588)
T 2j04_A 209 VSASSHQPVSRMIQNASRRKITDLKIV---DYKVVLTC-PGYVHKIDLKNYSI--SS-L----KTGSLENFHIIPLNHEK 277 (588)
T ss_dssp CCSSSSCCCEEEEECCCSSCCCCEEEE---TTEEEEEC-SSEEEEEETTTTEE--EE-E----ECSCCSCCCEEEETTCS
T ss_pred CCCCccccceeeecccccCcEEEEEEE---CCEEEEEe-CCeEEEEECCCCeE--EE-E----EcCCCceEEEEEeeeCC
Confidence 988773 4567 4888999999998 48899887 69999999987665 22 1 1147789999999 99
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCcccccCCCceeecCCCCeeeecCCCccceeecccCCCCCcCCCCcccCCCCCCCCCCC
Q psy9598 825 DGTTCALTDSYGHLLVYGLGGFKRPQNIPRELFFHTDYRTLNRPNGLFEPTYDEVTNLPPHLMPPPFLVDLNGTPYPPEV 904 (1915)
Q Consensus 825 dg~~Lasg~~dG~I~Iwdl~s~~~~~~l~~~~~F~~d~~~Lv~~~~~~~~v~D~~t~~~p~~~~~pfl~~~~G~~ypp~~ 904 (1915)
|+..|++++.+|. +||.+. .+.|++|+..++.. ...+.+|+...+... .....|. +.|..++|++
T Consensus 278 d~~~La~a~edG~-klw~~d----------~~~~spd~~l~a~~-d~~v~lW~~~g~~l~-~~~~~~~--I~~va~SPdG 342 (588)
T 2j04_A 278 ESTILLMSNKTSY-KVLLED----------ELHVTADNIIAPYL-EKKFKKWSTIWNEFN-NYETTLV--IHGISLSPDG 342 (588)
T ss_dssp SCEEEEECSSCEE-EEEESS----------SEEEECCCSSHHHH-HHHHHHTTTTTTSSS-SSCCEEE--EEEEEECTTS
T ss_pred CCCEEEEEcCCCC-EEEeec----------cEEECCCceEEEEc-CCEEEEEECCCCcee-eeccceE--EEEEEECCCC
Confidence 9999999999999 999988 25699999888754 444568876544311 1111211 4456778888
Q ss_pred cccccC
Q psy9598 905 QRLVPG 910 (1915)
Q Consensus 905 Q~lv~G 910 (1915)
+.++.+
T Consensus 343 ~~lA~~ 348 (588)
T 2j04_A 343 YSIAIV 348 (588)
T ss_dssp SEEEEE
T ss_pred CEEEEE
Confidence 888765
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.96 E-value=9.4e-27 Score=290.77 Aligned_cols=335 Identities=10% Similarity=0.026 Sum_probs=254.7
Q ss_pred CCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEE-EEEeCCCcEEEEECCCCceEEEeecCCCCeEEE
Q psy9598 488 GEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILL-AAGTVDKTIRIWNLQTLAPISVLVGHQGIITGV 566 (1915)
Q Consensus 488 g~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~L-aSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl 566 (1915)
+.++++++.|+.|++||+.+++++..+.+|. .+.+++|+|++.+| ++++.|++|++||+.+++.+..+..|. .|.++
T Consensus 2 ~~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~ 79 (391)
T 1l0q_A 2 TFAYIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGV 79 (391)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEE
T ss_pred CEEEEEcCCCCEEEEEECCCCeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-Cccce
Confidence 3468889999999999999999999998775 48999999999977 677789999999999999998887665 89999
Q ss_pred EeccCccCCCcEE-EEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEE-EEEeCCCeEEE
Q psy9598 567 NFCPLEVNGFNYL-ASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFL-ATGSGDHHVRV 644 (1915)
Q Consensus 567 ~fsp~~~~d~~~L-~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~L-asgs~Dg~I~I 644 (1915)
+|+|++ .+| ++++.++.|++||+.++..+.... +...+.+++|+|+|..| ++++.++.|++
T Consensus 80 ~~spdg----~~l~~~~~~~~~v~v~d~~~~~~~~~~~-------------~~~~~~~~~~s~dg~~l~~~~~~~~~v~~ 142 (391)
T 1l0q_A 80 AVSPDG----KQVYVTNMASSTLSVIDTTSNTVAGTVK-------------TGKSPLGLALSPDGKKLYVTNNGDKTVSV 142 (391)
T ss_dssp EECTTS----SEEEEEETTTTEEEEEETTTTEEEEEEE-------------CSSSEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred EECCCC----CEEEEEECCCCEEEEEECCCCeEEEEEe-------------CCCCcceEEECCCCCEEEEEeCCCCEEEE
Confidence 999953 555 566678999999999875433322 12568999999999977 68888999999
Q ss_pred EEecCCCCCceeEEeccCCCCeeEEEEcCCCCEE-EEEeCCCcEEEEEccCCceEEeeecccccCCCCcccccccccccc
Q psy9598 645 YKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRF-VSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIK 723 (1915)
Q Consensus 645 wDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L-~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 723 (1915)
||+. ....+..+..| ..+.+++|+|++.+| ++++.+|.|++||+.++...... .+...
T Consensus 143 ~d~~---~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~-----------------~~~~~ 201 (391)
T 1l0q_A 143 INTV---TKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTV-----------------KVEAA 201 (391)
T ss_dssp EETT---TTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE-----------------ECSSE
T ss_pred EECC---CCcEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEE-----------------ecCCC
Confidence 9984 33444455444 567999999999877 67788999999999987654322 13346
Q ss_pred EEEEEECCCCCEEEEEEe--cCCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEE-EEEecCceEEEEECCCCccc
Q psy9598 724 VTMVAWDASDRWVITAIN--FNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVL-LSAGHDGLIIIWDILSSKQR 800 (1915)
Q Consensus 724 V~~va~spdg~~L~t~s~--~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~L-aSgs~DG~I~IWdl~s~~~~ 800 (1915)
+.+++|+|++.+|++++. .++.|++||+.+++.+..+..|.. +.+++|+| ++.+| ++++.|+.|++||+.+++.
T Consensus 202 ~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~s~-dg~~l~~s~~~d~~v~v~d~~~~~~- 278 (391)
T 1l0q_A 202 PSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPD-PAGIAVTP-DGKKVYVALSFXNTVSVIDTATNTI- 278 (391)
T ss_dssp EEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSS-EEEEEECT-TSSEEEEEETTTTEEEEEETTTTEE-
T ss_pred ccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCCC-ccEEEEcc-CCCEEEEEcCCCCEEEEEECCCCcE-
Confidence 789999999999999884 489999999999999999988764 78999999 77766 6778899999999998876
Q ss_pred cceeeeeeecCCCCc----------ceEEEEEcCCC----------CEEEEEeCCCeEEEEeCCCCcccccCCCceeecC
Q psy9598 801 GYKWFHNIVEGQGEG----------ALFDGKWSPDG----------TTCALTDSYGHLLVYGLGGFKRPQNIPRELFFHT 860 (1915)
Q Consensus 801 ~~~~~~~~~~~~~~~----------~V~~vafSpdg----------~~Lasg~~dG~I~Iwdl~s~~~~~~l~~~~~F~~ 860 (1915)
+..+.......+.+ .+....|+.+. ..|...+.+..+++|++.++...........|++
T Consensus 279 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~~~~~~~~~~~~~~ 357 (391)
T 1l0q_A 279 -TATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGSSSKKQNPTHTYSE 357 (391)
T ss_dssp -EEEEECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSSSCEECSSSCEECCSS
T ss_pred -EEEEECCcCCCccceeeecccccccccccccccccccccccccceEEEEeCCCCceEEEEECCCCcccCcCCCeEEeCC
Confidence 44443110000000 01112222221 3455566788899999988765433334567888
Q ss_pred CCCeee
Q psy9598 861 DYRTLN 866 (1915)
Q Consensus 861 d~~~Lv 866 (1915)
+|...+
T Consensus 358 ~g~y~~ 363 (391)
T 1l0q_A 358 TGIYTV 363 (391)
T ss_dssp CEEEEE
T ss_pred CceEEE
Confidence 887665
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.96 E-value=6.2e-28 Score=293.54 Aligned_cols=311 Identities=14% Similarity=0.149 Sum_probs=219.0
Q ss_pred EEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCC----ceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCe
Q psy9598 512 ATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTL----APISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGC 587 (1915)
Q Consensus 512 ~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg----~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~Dgt 587 (1915)
..+.+|.+.|++|+|+|++.+||+|+.||+|+|||+.++ ..+..+.+|...|++++|+|.. ++.+|++|+.||+
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--d~~~l~s~~~dg~ 82 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPE--YGRIIASASYDKT 82 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGG--GCSEEEEEETTSC
T ss_pred ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCC--CCCEEEEEcCCCe
Confidence 356899999999999999999999999999999999876 4677788999999999999841 3589999999999
Q ss_pred EEEEecccCccccceeccCccccccccCCCCCceEEEEECCC--CcEEEEEeCCCeEEEEEecCCCCCceeE--------
Q psy9598 588 IGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPG--GLFLATGSGDHHVRVYKMDGVDSPLGIL-------- 657 (1915)
Q Consensus 588 I~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspd--g~~Lasgs~Dg~I~IwDl~~~~~~~~i~-------- 657 (1915)
|++||+.++...... ........+..|...|.+++|+|+ +.+|++|+.||.|++||+........+.
T Consensus 83 v~vwd~~~~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~ 159 (351)
T 3f3f_A 83 VKLWEEDPDQEECSG---RRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVL 159 (351)
T ss_dssp EEEEEECTTSCTTSS---CSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESC
T ss_pred EEEEecCCCcccccc---cCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccccccc
Confidence 999999876432110 001122334467889999999999 9999999999999999996543222211
Q ss_pred --EeccCCCCeeEEEEcCC---CCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCC
Q psy9598 658 --EVEEHSDKVDSIQWSHS---HLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDAS 732 (1915)
Q Consensus 658 --~l~~h~~~V~sl~fspd---g~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spd 732 (1915)
...+|...|.+++|+|+ +.+|++++.++.+.+|+...+..... .....|...|++++|+|+
T Consensus 160 ~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~h~~~i~~~~~~p~ 225 (351)
T 3f3f_A 160 SIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVA--------------AKLPGHKSLIRSISWAPS 225 (351)
T ss_dssp SCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEE--------------EECCCCCSCEEEEEECCC
T ss_pred ccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeee--------------eecCCCCcceeEEEECCC
Confidence 11268889999999997 89999999999998887776653221 123347789999999999
Q ss_pred C----CEEEEEEecCCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEEe----cCceEEEEECCCCcccccee
Q psy9598 733 D----RWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAG----HDGLIIIWDILSSKQRGYKW 804 (1915)
Q Consensus 733 g----~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs----~DG~I~IWdl~s~~~~~~~~ 804 (1915)
+ .+|++++. ||.|++||+.++........+...+....+++ ....++++. ..+.+.+|+...... +..
T Consensus 226 ~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 301 (351)
T 3f3f_A 226 IGRWYQLIATGCK-DGRIRIFKITEKLSPLASEESLTNSNMFDNSA-DVDMDAQGRSDSNTEEKAELQSNLQVEL--LSE 301 (351)
T ss_dssp SSCSSEEEEEEET-TSCEEEEEEEECC----------------------------------------CCSEEEEE--EEE
T ss_pred CCCcceEEEEEcC-CCeEEEEeCCCCcCccccCCcccceeccCCCc-ccccccccccccccceeeeecccccccE--EEE
Confidence 8 78888887 99999999988766555544444444444444 333344433 334455555444333 333
Q ss_pred eeeeecCCCCcceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcccc
Q psy9598 805 FHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGGFKRPQ 850 (1915)
Q Consensus 805 ~~~~~~~~~~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl~s~~~~~ 850 (1915)
+. .|.+.|++++|+|+|.+||+++.||.|+||++.++....
T Consensus 302 ~~-----~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~ 342 (351)
T 3f3f_A 302 HD-----DHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFK 342 (351)
T ss_dssp EC-----TTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEE
T ss_pred Ee-----cccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchh
Confidence 32 466889999999999999999999999999999876543
|
| >2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.6e-29 Score=303.77 Aligned_cols=177 Identities=23% Similarity=0.321 Sum_probs=139.1
Q ss_pred ChHHHHhhcccccC-CHHHHHHHHHHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHhcCCCCCCCcchhhhhccccCCCCC
Q psy9598 1 LTTLRARFQNRFYR-RITSAQFDVRYLAANAEKFNEPHSNIVKYARIITDLLLRIIKEPNPVDVPVVYHELLQNYETSSS 79 (1915)
Q Consensus 1 L~tI~~kl~~~~Y~-~~~ef~~D~~li~~Na~~yN~p~s~I~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (1915)
|+||++|| +.|. ++++|++||+|||+||++||+++|.|+++|..|.++|.+.+...... ..
T Consensus 123 l~tI~~kl--~~y~~~~~~f~~D~~li~~Na~~yN~~~s~i~~~a~~l~~~~~~~~~k~k~~---------~~------- 184 (361)
T 2r10_A 123 INEIKSRD--YEYEDGPSNFLLDVELLTKNCQAYNEYDSLIVKNSMQVVMLIEFEVLKAKNL---------KR------- 184 (361)
T ss_dssp HHHHHTSC--CCSTTHHHHHHHHHHHHHHHHHHHBCSSSHHHHHHHHHHHHHHHHHHHHHTT---------TT-------
T ss_pred HHHHHHHh--hccCCCHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhcccc---------CC-------
Confidence 68999999 3344 89999999999999999999999999999999999998866532100 00
Q ss_pred cccccccccccccccCCCCcchhhhhhhhccccCCchhHHHHHHHHHH--------HH----------hcCCCCCCCCCC
Q psy9598 80 EEEEEEDSKSRQRRVRPTAVTRAQREAMNQKKLKRPFNWKNECREVLE--------TL----------WVCPDSEPFRKP 141 (1915)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~--------~l----------~~~~~~~~F~~p 141 (1915)
+..+....+ ..+...|..|+. .+ ..|+.++||++|
T Consensus 185 ----------------~~~i~~~~k-----------~~l~~~~~~l~~~~~~~i~~~~~~~r~~~~~~~~~~~s~~F~~p 237 (361)
T 2r10_A 185 ----------------NYLINSEVK-----------AKLLHYLNKLVDATEKKINQALLGASSPKNLDDKVKLSEPFMEL 237 (361)
T ss_dssp ----------------CCBCCHHHH-----------HHHHHHHHHHHHCCHHHHHHHHHGGGCCSSCCCSSCTTGGGSSC
T ss_pred ----------------cCcCCHHHH-----------HHHHHHHHHhhccchHHHHHHHhccccccccccCCcchhcccCC
Confidence 000000000 001112222221 11 146789999999
Q ss_pred CCCCCCCCccccCCCcCCHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHH-HH
Q psy9598 142 VDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQNKRSKIYIMTTRLSEFAEEHLRRL-TV 220 (1915)
Q Consensus 142 vd~~~~pdY~~iIk~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~Lif~N~~~yN~~~~s~i~~~a~~l~~~f~~~~~~~-~~ 220 (1915)
||...+||||+||++||||+||++||+++.|.++++|..||+|||.||++||+++ |.||.+|..|+++|+++|++. ..
T Consensus 238 vd~~~~PdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~N~~~yN~~~-s~i~~~A~~L~~~f~~~~~~~~~p 316 (361)
T 2r10_A 238 VDKDELPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPS-ALIYKDATTLTNYFNYLIQKEFFP 316 (361)
T ss_dssp CCTTTCTHHHHHCSSCCCHHHHHHHHHHTCCCBHHHHHHHHHHHHHHHHHHSCTT-SHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred CChhhcccHHHHhcCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999999999999999999999976 999999999999999999983 44
Q ss_pred hhh
Q psy9598 221 RWN 223 (1915)
Q Consensus 221 ~~~ 223 (1915)
.+.
T Consensus 317 ~~~ 319 (361)
T 2r10_A 317 ELQ 319 (361)
T ss_dssp HHH
T ss_pred cch
Confidence 443
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.8e-27 Score=299.56 Aligned_cols=300 Identities=11% Similarity=0.061 Sum_probs=234.5
Q ss_pred CcEEEEEEcCCCCEEEEEECCCcEEEEECCCCc---EEEEEeCC------------------------------------
Q psy9598 477 SAVFCVLFDKLGEVIVTGADDLLIKLWRARDGK---LLATLRGC------------------------------------ 517 (1915)
Q Consensus 477 ~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~---~~~~l~gH------------------------------------ 517 (1915)
.+|.||+|+++|++|++++ ++.|++||+.+|+ .+.++..+
T Consensus 5 ~p~~~v~~s~dg~~l~~~~-~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAII-KNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEEEEE-TTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEEe-CCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 5789999999999777664 7799999999998 77666543
Q ss_pred ------------------CCCEEEEEEeCCCCEE-EEEeCCCcEEEEECC--CCceEEEee--cCCCCeEEEEeccCccC
Q psy9598 518 ------------------SGEISDIAIDNRNILL-AAGTVDKTIRIWNLQ--TLAPISVLV--GHQGIITGVNFCPLEVN 574 (1915)
Q Consensus 518 ------------------~~~I~~Lafspdg~~L-aSgs~DgtIrVWDl~--tg~~~~~l~--~h~~~V~sl~fsp~~~~ 574 (1915)
.+.|++++|+|++.+| ++|+.||+|+|||+. ++.++..+. .|...|++++|+|+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--- 160 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAED--- 160 (450)
T ss_dssp ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTT---
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCC---
Confidence 3379999999999996 899999999999999 888888886 56789999999994
Q ss_pred CCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCC---CcEEEEEeCCCeEEEEEecCCC
Q psy9598 575 GFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPG---GLFLATGSGDHHVRVYKMDGVD 651 (1915)
Q Consensus 575 d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspd---g~~Lasgs~Dg~I~IwDl~~~~ 651 (1915)
+.+|++|+.+|.|.+|++.++..... ....+.+|...|.+++|+|+ +.+|++|+.|+.|+|||+..
T Consensus 161 -~~~l~~~~~~g~v~~~~~~~~~~~~~--------~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~-- 229 (450)
T 2vdu_B 161 -DTTVIIADKFGDVYSIDINSIPEEKF--------TQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQ-- 229 (450)
T ss_dssp -SSEEEEEETTSEEEEEETTSCCCSSC--------CCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESC--
T ss_pred -CCEEEEEeCCCcEEEEecCCcccccc--------cceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCC--
Confidence 48999999999999999987653220 01123356788999999999 99999999999999999943
Q ss_pred CCceeEE-eccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccc---c-CCCC-----cccccccccc
Q psy9598 652 SPLGILE-VEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNT---C-LPHT-----KETSDETNKK 721 (1915)
Q Consensus 652 ~~~~i~~-l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~---~-~~~~-----~~~~~~~~~~ 721 (1915)
...+.. +.+|...|.+++|+ ++.+|++|+.||+|+|||+.++++......... . .... ..........
T Consensus 230 -~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (450)
T 2vdu_B 230 -CFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIE 307 (450)
T ss_dssp -TTCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBC
T ss_pred -CceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccce
Confidence 333444 56899999999999 999999999999999999999886554321100 0 0000 0000111345
Q ss_pred ccEEEEEECCCCCEEEEEEecCCeEEEEEC--CCC---ceEEEeeCCCCCeEEEEEccCCCCEEEEEec-------CceE
Q psy9598 722 IKVTMVAWDASDRWVITAINFNFQIKIWDA--FNG---DLVQVLKGHTNEVFVLESHPFDSRVLLSAGH-------DGLI 789 (1915)
Q Consensus 722 ~~V~~va~spdg~~L~t~s~~Dg~I~vwD~--~tg---~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~-------DG~I 789 (1915)
..|.+++|+|++.+|++++..++.|+||++ .++ .++..+.+| +.|.+++|+| ++ ++++++. +..|
T Consensus 308 ~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~-~~-~~v~~~~~~~~~~~~~~i 384 (450)
T 2vdu_B 308 FAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHN-DE-FQVTLDNKESSGVQKNFA 384 (450)
T ss_dssp CCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEET-TE-EEEEECCTTCCSSCCCSE
T ss_pred EEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecC-Cc-EEEEEecccCCCCCCcce
Confidence 678999999999999999944999999999 566 778888888 8899999999 54 4554433 4568
Q ss_pred EEEECCC
Q psy9598 790 IIWDILS 796 (1915)
Q Consensus 790 ~IWdl~s 796 (1915)
.||.+..
T Consensus 385 ~v~~~~~ 391 (450)
T 2vdu_B 385 KFIEYNL 391 (450)
T ss_dssp EEEEEET
T ss_pred EEEEEEc
Confidence 8887754
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.96 E-value=2.4e-27 Score=301.45 Aligned_cols=261 Identities=16% Similarity=0.285 Sum_probs=215.7
Q ss_pred EEEeCCCCCEEEEEEeCC-CCEEEEEeCCCcEEEEECCC----------CceEEEeecCCCCeEEEEeccCccCCCcEEE
Q psy9598 512 ATLRGCSGEISDIAIDNR-NILLAAGTVDKTIRIWNLQT----------LAPISVLVGHQGIITGVNFCPLEVNGFNYLA 580 (1915)
Q Consensus 512 ~~l~gH~~~I~~Lafspd-g~~LaSgs~DgtIrVWDl~t----------g~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~ 580 (1915)
..+.+|.+.|++|+|+|+ +.+||+|+.||.|+||++.+ +.++..+.+|...|++|+|+|.+ ..+|+
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~---~~~l~ 198 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNL---NGYLL 198 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTS---TTEEE
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCC---CCeEE
Confidence 455679999999999997 78999999999999999986 67888999999999999999954 23999
Q ss_pred EEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECC-CCcEEEEEeCCCeEEEEEecCCCCCceeEEe
Q psy9598 581 STSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSP-GGLFLATGSGDHHVRVYKMDGVDSPLGILEV 659 (1915)
Q Consensus 581 sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fsp-dg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l 659 (1915)
+|+.||+|++|++..+....... .....+..|...|.+++|+| ++.+|++|+.||.|++||++.......+..+
T Consensus 199 s~~~dg~i~vwd~~~~~~~~~~~-----~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~ 273 (430)
T 2xyi_A 199 SASDDHTICLWDINATPKEHRVI-----DAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTV 273 (430)
T ss_dssp EECTTSCEEEEETTSCCBGGGEE-----ECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEE
T ss_pred EEeCCCeEEEEeCCCCCCCCcee-----ccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEe
Confidence 99999999999998753221111 11223446788999999999 6789999999999999999755434566677
Q ss_pred ccCCCCeeEEEEcCCCC-EEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCE-EE
Q psy9598 660 EEHSDKVDSIQWSHSHL-RFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRW-VI 737 (1915)
Q Consensus 660 ~~h~~~V~sl~fspdg~-~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~-L~ 737 (1915)
..|...|.+|+|+|++. +|++|+.||.|+|||++.... .......|...|++++|+|++.+ |+
T Consensus 274 ~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~---------------~~~~~~~h~~~v~~i~~sp~~~~~l~ 338 (430)
T 2xyi_A 274 DAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL---------------KLHSFESHKDEIFQVQWSPHNETILA 338 (430)
T ss_dssp ECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS---------------CSEEEECCSSCEEEEEECSSCTTEEE
T ss_pred ecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCC---------------CeEEeecCCCCEEEEEECCCCCCEEE
Confidence 89999999999999987 688999999999999986431 11122346788999999999964 66
Q ss_pred EEEecCCeEEEEECCC--------------CceEEEeeCCCCCeEEEEEccCCCC-EEEEEecCceEEEEECCCC
Q psy9598 738 TAINFNFQIKIWDAFN--------------GDLVQVLKGHTNEVFVLESHPFDSR-VLLSAGHDGLIIIWDILSS 797 (1915)
Q Consensus 738 t~s~~Dg~I~vwD~~t--------------g~~i~~l~gH~~~V~sl~~sp~dg~-~LaSgs~DG~I~IWdl~s~ 797 (1915)
+++. ||.|+|||+.. ..++..+.+|...|++++|+| ++. +|++++.||.|+||++...
T Consensus 339 s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p-~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 339 SSGT-DRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNP-NEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp EEET-TSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECS-SSTTEEEEEETTSEEEEEEECHH
T ss_pred EEeC-CCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECC-CCCCEEEEEECCCCEEEeEcccc
Confidence 6666 99999999986 477888899999999999999 666 9999999999999999754
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.4e-26 Score=289.92 Aligned_cols=323 Identities=9% Similarity=0.058 Sum_probs=251.6
Q ss_pred CCCcEEEEE---EcCCCCEEEEE--------------ECCC--cEEEEECCCC--cEEEEEeCCCCCEEEEEEeCCCCEE
Q psy9598 475 HLSAVFCVL---FDKLGEVIVTG--------------ADDL--LIKLWRARDG--KLLATLRGCSGEISDIAIDNRNILL 533 (1915)
Q Consensus 475 H~~~V~~va---fspdg~~LaTG--------------s~Dg--~I~IWd~~tg--~~~~~l~gH~~~I~~Lafspdg~~L 533 (1915)
+...++.++ |+|++..+++. +.++ .|.+||..++ ..+..+..+. .+.+++|+|++.++
T Consensus 59 ~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~ 137 (433)
T 3bws_A 59 KNIALVEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGITHRFISRFKTGF-QPKSVRFIDNTRLA 137 (433)
T ss_dssp TTEEEEEEEEECCCTTCCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCSEEEEEEEECSS-CBCCCEESSSSEEE
T ss_pred cCCccEEEEEeeccCCCcEEEEEEccccCcceeeecccCCCceEEEEECCCCCcceEEEEEcCCC-CceEEEEeCCCeEE
Confidence 345566677 77766665543 3333 4444455445 5666676554 46699999988888
Q ss_pred EEEeCCCcEEEEECCCCceEE-----EeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCcc
Q psy9598 534 AAGTVDKTIRIWNLQTLAPIS-----VLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPV 608 (1915)
Q Consensus 534 aSgs~DgtIrVWDl~tg~~~~-----~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~ 608 (1915)
++++.++.|++||+.+++.+. .+.+|.+.|++++|++. +.++++++.|+.|++||+.++..+..+.
T Consensus 138 ~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~~~s~~~d~~v~~~d~~~~~~~~~~~----- 208 (433)
T 3bws_A 138 IPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEH----NELWVSQMQANAVHVFDLKTLAYKATVD----- 208 (433)
T ss_dssp EEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGG----TEEEEEEGGGTEEEEEETTTCCEEEEEE-----
T ss_pred EEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCC----CEEEEEECCCCEEEEEECCCceEEEEEc-----
Confidence 888889999999999999887 34578999999999884 5899999999999999998775433322
Q ss_pred ccccccCCCCCceEEEEECCCCcEEEE-EeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEe-----
Q psy9598 609 MFNERIRPGNAHILCSSFSPGGLFLAT-GSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGS----- 682 (1915)
Q Consensus 609 ~~~~~~~~~~~~V~~l~fspdg~~Las-gs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs----- 682 (1915)
.+...+.+++|+|++..|++ ++.++.|++||+.. ...+..+.. ...+.+++|+|+|.+|++++
T Consensus 209 -------~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~---~~~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~ 277 (433)
T 3bws_A 209 -------LTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKT---KLEIRKTDK-IGLPRGLLLSKDGKELYIAQFSASN 277 (433)
T ss_dssp -------CSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTT---TEEEEECCC-CSEEEEEEECTTSSEEEEEEEESCT
T ss_pred -------CCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCC---CcEEEEecC-CCCceEEEEcCCCCEEEEEECCCCc
Confidence 34578999999999998854 55799999999843 334444444 45699999999999999888
Q ss_pred ---CCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEE
Q psy9598 683 ---RDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQV 759 (1915)
Q Consensus 683 ---~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~ 759 (1915)
.||.|++||+.+++..... .+...+.+++|+|++.++++++..++.|++||+.+++.+..
T Consensus 278 ~~~~dg~i~~~d~~~~~~~~~~-----------------~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~ 340 (433)
T 3bws_A 278 QESGGGRLGIYSMDKEKLIDTI-----------------GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKS 340 (433)
T ss_dssp TCSCCEEEEEEETTTTEEEEEE-----------------EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred cccCCCeEEEEECCCCcEEeec-----------------cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEE
Confidence 5899999999887644321 13446788999999988877765599999999999998888
Q ss_pred eeCCCCCeEEEEEccCCCCEEEEEec---------------CceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcC
Q psy9598 760 LKGHTNEVFVLESHPFDSRVLLSAGH---------------DGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSP 824 (1915)
Q Consensus 760 l~gH~~~V~sl~~sp~dg~~LaSgs~---------------DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSp 824 (1915)
+. |...+.+++|+| ++.+|++++. ||.|++||+.+++. +..+. +...+.+++|+|
T Consensus 341 ~~-~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~--~~~~~------~~~~~~~~~~s~ 410 (433)
T 3bws_A 341 IP-VFDKPNTIALSP-DGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTV--KEFWE------AGNQPTGLDVSP 410 (433)
T ss_dssp EE-CSSSEEEEEECT-TSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEE--EEEEE------CSSSEEEEEECT
T ss_pred ec-CCCCCCeEEEcC-CCCEEEEEecCCCccccccccccccceEEEEEECCCCcE--EEEec------CCCCCceEEEcC
Confidence 86 677899999999 8888888776 57999999998877 55544 245789999999
Q ss_pred CCCEEEEEeC-CCeEEEEeCCC
Q psy9598 825 DGTTCALTDS-YGHLLVYGLGG 845 (1915)
Q Consensus 825 dg~~Lasg~~-dG~I~Iwdl~s 845 (1915)
+|.+|++++. +|.|+||++..
T Consensus 411 dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 411 DNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp TSCEEEEEETTTTEEEEEEETT
T ss_pred CCCEEEEEECCCCeEEEEEecC
Confidence 9999998875 99999999864
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.95 E-value=7.9e-27 Score=288.76 Aligned_cols=314 Identities=12% Similarity=0.062 Sum_probs=214.2
Q ss_pred EEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEE
Q psy9598 502 LWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLAS 581 (1915)
Q Consensus 502 IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~s 581 (1915)
||++.+...+.++.+|...|++|+|+|+|++|++|+.++ ++||++.++..+.....+ .+..+++.+.. ..++++
T Consensus 3 i~s~~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~--~~~~~~~~~~~---~~~~~~ 76 (355)
T 3vu4_A 3 LGSMITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMR--HLSKVRMLHRT---NYVAFV 76 (355)
T ss_dssp ----------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECS--CCCEEEECTTS---SEEEEE
T ss_pred cccccccCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecC--CeEEEEEcCCC---CEEEEE
Confidence 577778888888899999999999999999999998775 789999987766554333 47778887743 234467
Q ss_pred EeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEecc
Q psy9598 582 TSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEE 661 (1915)
Q Consensus 582 gs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~ 661 (1915)
|+.|++|++||+.++..+..+.+ ...|.+++|++++ ++++ .++.|+|||+.... ..+..+..
T Consensus 77 ~~~d~~v~iWd~~~~~~~~~~~~-------------~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~--~~~~~~~~ 138 (355)
T 3vu4_A 77 TGVKEVVHIWDDVKKQDVSRIKV-------------DAPVKDLFLSREF--IVVS-YGDVISVFKFGNPW--KRITDDIR 138 (355)
T ss_dssp CSSTTEEEEEETTTTEEEEEEEC-------------SSCEEEEEECSSE--EEEE-ETTEEEEEESSTTC--CBSSCCEE
T ss_pred ECCccEEEEEECCCCcEEEEEEC-------------CCceEEEEEcCCE--EEEE-EcCEEEEEECCCCc--eeeEEecc
Confidence 88899999999998865544332 3679999999874 3333 47899999995431 22222222
Q ss_pred CCCCeeEEEEcCCCCEEEE--EeCCCcEEEEEccCCceEEeeecccccCCCCcc-ccccccccccEEEEEECCCCCEEEE
Q psy9598 662 HSDKVDSIQWSHSHLRFVS--GSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKE-TSDETNKKIKVTMVAWDASDRWVIT 738 (1915)
Q Consensus 662 h~~~V~sl~fspdg~~L~s--gs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~V~~va~spdg~~L~t 738 (1915)
....+++++ .++++ |+.||.|++||+.++......... ........ .....+|...|++++|+|+|.+|++
T Consensus 139 ---~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~-~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s 212 (355)
T 3vu4_A 139 ---FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQG-VQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVAT 212 (355)
T ss_dssp ---EEEEEEEET--TEEEEEESSCTTCEEEEECCC-------------------CCEEECCCSSCEEEEEECTTSSEEEE
T ss_pred ---CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCcccccccc-ccccccCcccEEEEccCCceEEEEECCCCCEEEE
Confidence 444556676 55665 689999999999875411100000 00000001 2334568899999999999999999
Q ss_pred EEecCCe-EEEEECCCCceEEEee-C-CCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeee--------
Q psy9598 739 AINFNFQ-IKIWDAFNGDLVQVLK-G-HTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHN-------- 807 (1915)
Q Consensus 739 ~s~~Dg~-I~vwD~~tg~~i~~l~-g-H~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~-------- 807 (1915)
++. |++ |+|||+.+++++..+. + |...|++++|+| ++.+|++|+.||+|+|||+..+.......+..
T Consensus 213 ~s~-d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~-~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~ 290 (355)
T 3vu4_A 213 CSQ-DGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWST-DGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQ 290 (355)
T ss_dssp EET-TCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECT-TSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCC
T ss_pred EeC-CCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECC-CCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccc
Confidence 998 998 9999999999999998 6 999999999999 99999999999999999998764311111100
Q ss_pred --------eecCCCCcceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc
Q psy9598 808 --------IVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGGFK 847 (1915)
Q Consensus 808 --------~~~~~~~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl~s~~ 847 (1915)
.+..........++|++||.+|++++.||.+.+|++..+.
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~ 338 (355)
T 3vu4_A 291 SEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFDD 338 (355)
T ss_dssp CSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEET
T ss_pred cccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCC
Confidence 0111112334679999999999999999999999987654
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.9e-26 Score=285.29 Aligned_cols=286 Identities=11% Similarity=0.145 Sum_probs=216.9
Q ss_pred EEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEE-EEEeCCCcEEEEECC
Q psy9598 470 YVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILL-AAGTVDKTIRIWNLQ 548 (1915)
Q Consensus 470 ~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~L-aSgs~DgtIrVWDl~ 548 (1915)
..+.+|.+.|+||+|+|+|.+||+|+.+| ++||++.++..+.....+ .+..+++.+++.++ ++|+.|++|+|||+.
T Consensus 13 ~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~ 89 (355)
T 3vu4_A 13 VPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMR--HLSKVRMLHRTNYVAFVTGVKEVVHIWDDV 89 (355)
T ss_dssp ------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECS--CCCEEEECTTSSEEEEECSSTTEEEEEETT
T ss_pred cccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecC--CeEEEEEcCCCCEEEEEECCccEEEEEECC
Confidence 35678999999999999999999998775 789999988777665433 57888898888877 567788999999999
Q ss_pred CCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccC-ccccceeccCccccccccCCCCCceEEEEEC
Q psy9598 549 TLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLD-IDISKTVFHEPVMFNERIRPGNAHILCSSFS 627 (1915)
Q Consensus 549 tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~-~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs 627 (1915)
+++++..+. |...|.++.|++ ..++++ .++.|++||+.++ ..+..+.. ....++++
T Consensus 90 ~~~~~~~~~-~~~~v~~v~~~~------~~~~~~-~~~~i~i~d~~~~~~~~~~~~~---------------~~~~~~~s 146 (355)
T 3vu4_A 90 KKQDVSRIK-VDAPVKDLFLSR------EFIVVS-YGDVISVFKFGNPWKRITDDIR---------------FGGVCEFS 146 (355)
T ss_dssp TTEEEEEEE-CSSCEEEEEECS------SEEEEE-ETTEEEEEESSTTCCBSSCCEE---------------EEEEEEEE
T ss_pred CCcEEEEEE-CCCceEEEEEcC------CEEEEE-EcCEEEEEECCCCceeeEEecc---------------CCceEEEE
Confidence 999999887 677999999987 344444 4789999999877 43322211 23345566
Q ss_pred CCCcEEEE--EeCCCeEEEEEecCCCCC------------c-eeEEeccCCCCeeEEEEcCCCCEEEEEeCCCc-EEEEE
Q psy9598 628 PGGLFLAT--GSGDHHVRVYKMDGVDSP------------L-GILEVEEHSDKVDSIQWSHSHLRFVSGSRDGT-ALIWY 691 (1915)
Q Consensus 628 pdg~~Las--gs~Dg~I~IwDl~~~~~~------------~-~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~-I~IWD 691 (1915)
+ .++++ |+.+|.|++||+...... . .+..+.+|.+.|.+++|+|+|.+|++|+.||+ |+|||
T Consensus 147 ~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd 224 (355)
T 3vu4_A 147 N--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFK 224 (355)
T ss_dssp T--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEE
T ss_pred c--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEE
Confidence 6 45555 688999999999542200 1 15678999999999999999999999999998 99999
Q ss_pred ccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCce--EEEee--------
Q psy9598 692 YKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDL--VQVLK-------- 761 (1915)
Q Consensus 692 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~--i~~l~-------- 761 (1915)
+.+++...... ...|...|.+++|+|+|.+|++++. |++|+|||+..+.. ...+.
T Consensus 225 ~~~~~~~~~~~--------------~g~h~~~v~~~~~s~~~~~l~s~s~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~ 289 (355)
T 3vu4_A 225 TEDGVLVREFR--------------RGLDRADVVDMKWSTDGSKLAVVSD-KWTLHVFEIFNDQDNKRHALKGWINMKYF 289 (355)
T ss_dssp TTTCCEEEEEE--------------CTTCCSCEEEEEECTTSCEEEEEET-TCEEEEEESSCCSCCCSEETTTTEECCCC
T ss_pred CCCCcEEEEEE--------------cCCCCCcEEEEEECCCCCEEEEEEC-CCEEEEEEccCCCCcccccccceeecccc
Confidence 99887554221 0126788999999999999999998 99999999976531 11111
Q ss_pred -------------CCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCcc
Q psy9598 762 -------------GHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQ 799 (1915)
Q Consensus 762 -------------gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~ 799 (1915)
.+......++|++ ++.+|++++.||.+++|++..+..
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~a~~~-d~~~l~~~~~dg~~~~~~~~~~~~ 339 (355)
T 3vu4_A 290 QSEWSLCNFKLSVDKHVRGCKIAWIS-ESSLVVVWPHTRMIETFKVVFDDE 339 (355)
T ss_dssp CCSSCSEEEECCCCTTCCCCEEEESS-SSEEEEEETTTTEEEEEEEEEETT
T ss_pred ccccceeEEEeccCCCCCceEEEEeC-CCCEEEEEeCCCeEEEEEEEcCCC
Confidence 1122346789999 999999999999999999876554
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.95 E-value=3.9e-27 Score=296.21 Aligned_cols=276 Identities=14% Similarity=0.191 Sum_probs=224.9
Q ss_pred ccccCCCeEEEecccCCce--eeeEEecCCCCcEEEEEEcC-CCCEEEEEECCCcEEEEECCCC-------cEEEEEeCC
Q psy9598 448 YSGPLSRSLMISSHKYSNL--RQHYVNLGHLSAVFCVLFDK-LGEVIVTGADDLLIKLWRARDG-------KLLATLRGC 517 (1915)
Q Consensus 448 ~tg~~d~~~~i~~~~~~~~--~~~~~l~gH~~~V~~vafsp-dg~~LaTGs~Dg~I~IWd~~tg-------~~~~~l~gH 517 (1915)
++|+.++.+.+|....... .....+.+|.+.|++++|+| ++.+||+|+.||.|+||++.++ ..+..+.+|
T Consensus 51 ~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h 130 (402)
T 2aq5_A 51 CEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGH 130 (402)
T ss_dssp BCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECC
T ss_pred EEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCC
Confidence 3567889999997643321 23456789999999999999 9999999999999999999988 678899999
Q ss_pred CCCEEEEEEeCCC-CEEEEEeCCCcEEEEECCCCceEEEe--ecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecc
Q psy9598 518 SGEISDIAIDNRN-ILLAAGTVDKTIRIWNLQTLAPISVL--VGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYK 594 (1915)
Q Consensus 518 ~~~I~~Lafspdg-~~LaSgs~DgtIrVWDl~tg~~~~~l--~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~ 594 (1915)
...|++|+|+|++ .+|++|+.||+|+|||+.++.++..+ .+|.+.|++++|+|+ +.+|++|+.||.|++||+.
T Consensus 131 ~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~l~~~~~d~~i~iwd~~ 206 (402)
T 2aq5_A 131 TKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRD----GALICTSCRDKRVRVIEPR 206 (402)
T ss_dssp SSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTT----SSCEEEEETTSEEEEEETT
T ss_pred CCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCC----CCEEEEEecCCcEEEEeCC
Confidence 9999999999998 69999999999999999999999999 889999999999994 5899999999999999998
Q ss_pred cCccccceeccCccccccccCCCCC-ceEEEEECCCCcEEEEE---eCCCeEEEEEecCCCCCceeEEeccCCCCeeEEE
Q psy9598 595 LDIDISKTVFHEPVMFNERIRPGNA-HILCSSFSPGGLFLATG---SGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQ 670 (1915)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~~~~~-~V~~l~fspdg~~Lasg---s~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~ 670 (1915)
++..+..+. ..|.+ .+.+++|+|++.+|++| +.|+.|++||+.......... ...|...|.+++
T Consensus 207 ~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~v~~~~ 274 (402)
T 2aq5_A 207 KGTVVAEKD-----------RPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQ-ELDTSSGVLLPF 274 (402)
T ss_dssp TTEEEEEEE-----------CSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEE-ECCCCSSCEEEE
T ss_pred CCceeeeec-----------cCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEE-eccCCCceeEEE
Confidence 875433321 12333 38899999999999999 799999999996544333333 235778899999
Q ss_pred EcCCCCEEEE-EeCCCcEEEEEccCCce-EEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEE
Q psy9598 671 WSHSHLRFVS-GSRDGTALIWYYKCSQW-RFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKI 748 (1915)
Q Consensus 671 fspdg~~L~s-gs~DG~I~IWDl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~v 748 (1915)
|+|++.+|++ |+.||.|++||+.++.. ..... ...+...|.+++|+|++.++++ . ++.+++
T Consensus 275 ~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~--------------~~~~~~~v~~~~~sp~~~~~~s--~-~~~~~~ 337 (402)
T 2aq5_A 275 FDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLS--------------MFSSKESQRGMGYMPKRGLEVN--K-CEIARF 337 (402)
T ss_dssp EETTTTEEEEEETTCSCEEEEEECSSTTCEEEEE--------------EECCSSCCSEEEECCGGGSCGG--G-TEEEEE
T ss_pred EcCCCCEEEEEEcCCCeEEEEEecCCCcceEeec--------------ccccCCcccceEEeccccccee--c-ceeEEE
Confidence 9999998864 55799999999988762 11110 1114577899999999998765 3 779999
Q ss_pred EECCCCce
Q psy9598 749 WDAFNGDL 756 (1915)
Q Consensus 749 wD~~tg~~ 756 (1915)
|++.++.+
T Consensus 338 ~~l~~~~~ 345 (402)
T 2aq5_A 338 YKLHERKC 345 (402)
T ss_dssp EEEETTEE
T ss_pred EEcCCCcE
Confidence 99987653
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.3e-26 Score=292.53 Aligned_cols=289 Identities=11% Similarity=0.003 Sum_probs=226.3
Q ss_pred CCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCc---eEEEeec-------------------------------------
Q psy9598 519 GEISDIAIDNRNILLAAGTVDKTIRIWNLQTLA---PISVLVG------------------------------------- 558 (1915)
Q Consensus 519 ~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~---~~~~l~~------------------------------------- 558 (1915)
.+|.+|+|+++|++|++++ ++.|++||+.+|+ .+..+..
T Consensus 5 ~p~~~v~~s~dg~~l~~~~-~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAII-KNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEEEEE-TTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEEe-CCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 4789999999999777664 7899999999998 6666553
Q ss_pred -----------------CCCCeEEEEeccCccCCCcEE-EEEeCCCeEEEEecc--cCccccceeccCccccccccCCCC
Q psy9598 559 -----------------HQGIITGVNFCPLEVNGFNYL-ASTSTDGCIGFWKYK--LDIDISKTVFHEPVMFNERIRPGN 618 (1915)
Q Consensus 559 -----------------h~~~V~sl~fsp~~~~d~~~L-~sgs~DgtI~iWDl~--~~~~~~~~~~~~~~~~~~~~~~~~ 618 (1915)
|.+.|++++|+|+ +.+| ++|+.||+|++||+. ++..+..+... .+.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d----~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~----------~~~ 149 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSD----ESRLIACADSDKSLLVFDVDKTSKNVLKLRKRF----------CFS 149 (450)
T ss_dssp ----------------CCCCCEEEEEECTT----SSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEE----------ECS
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCC----CCEEEEEECCCCeEEEEECcCCCCceeeeeecc----------cCC
Confidence 3337999999995 4675 899999999999998 66544333211 345
Q ss_pred CceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCc-eeEEeccCCCCeeEEEEcCC---CCEEEEEeCCCcEEEEEccC
Q psy9598 619 AHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPL-GILEVEEHSDKVDSIQWSHS---HLRFVSGSRDGTALIWYYKC 694 (1915)
Q Consensus 619 ~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~-~i~~l~~h~~~V~sl~fspd---g~~L~sgs~DG~I~IWDl~~ 694 (1915)
..|.+++|+|+|.+|++|+.+|.|++|++....... .+..+.+|...|.+|+|+|+ +.+|++|+.|+.|+|||+.+
T Consensus 150 ~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~ 229 (450)
T 2vdu_B 150 KRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQ 229 (450)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESC
T ss_pred CCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCC
Confidence 789999999999999999999999999985544332 34466789999999999999 99999999999999999988
Q ss_pred CceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCC-----------
Q psy9598 695 SQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGH----------- 763 (1915)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH----------- 763 (1915)
+...... ..+|...|.+++|+ ++.+|++++. |+.|+|||+.+++++..+..+
T Consensus 230 ~~~~~~~---------------~~~h~~~v~~~~~s-d~~~l~s~~~-d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 292 (450)
T 2vdu_B 230 CFIVDKW---------------LFGHKHFVSSICCG-KDYLLLSAGG-DDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQH 292 (450)
T ss_dssp TTCEEEE---------------CCCCSSCEEEEEEC-STTEEEEEES-SSEEEEEETTTCCEEEEEECHHHHGGGCCTTS
T ss_pred Cceeeee---------------ecCCCCceEEEEEC-CCCEEEEEeC-CCeEEEEECCCCcEeeeecchhhhhhhhhhcc
Confidence 7644321 23477889999999 9999999998 999999999999999888733
Q ss_pred --------------CCCeEEEEEccCCCCEEEEEe-cCceEEEEEC--CCCccccceeeeeeecCCCCcceEEEEEcCCC
Q psy9598 764 --------------TNEVFVLESHPFDSRVLLSAG-HDGLIIIWDI--LSSKQRGYKWFHNIVEGQGEGALFDGKWSPDG 826 (1915)
Q Consensus 764 --------------~~~V~sl~~sp~dg~~LaSgs-~DG~I~IWdl--~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg 826 (1915)
...|.+|+|+| ++.+|++++ .|+.|+||++ .++.. +..+. .+.+ ++.|.+++|+|++
T Consensus 293 ~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~~d~~i~iw~~~~~~~~~--l~~~~-~~~~--~~~v~~~~~~~~~ 366 (450)
T 2vdu_B 293 LAPPRFQNENNDIIEFAVSKIIKSK-NLPFVAFFVEATKCIIILEMSEKQKGD--LALKQ-IITF--PYNVISLSAHNDE 366 (450)
T ss_dssp BC----------CBCCCEEEEEECS-SSSEEEEEETTCSEEEEEEECSSSTTC--EEEEE-EEEC--SSCEEEEEEETTE
T ss_pred cccccccccccccceEEEEEEEEeC-CCCEEEEEECCCCeEEEEEeccCCCCc--eeecc-Eecc--CCceEEEEecCCc
Confidence 35789999999 999999998 8999999999 44422 22222 1222 2789999999965
Q ss_pred CEEEEEeC------CCeEEEEeCCC
Q psy9598 827 TTCALTDS------YGHLLVYGLGG 845 (1915)
Q Consensus 827 ~~Lasg~~------dG~I~Iwdl~s 845 (1915)
.++++++. +..|.||.+..
T Consensus 367 ~~v~~~~~~~~~~~~~~i~v~~~~~ 391 (450)
T 2vdu_B 367 FQVTLDNKESSGVQKNFAKFIEYNL 391 (450)
T ss_dssp EEEEECCTTCCSSCCCSEEEEEEET
T ss_pred EEEEEecccCCCCCCcceEEEEEEc
Confidence 44444332 44578887653
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.4e-26 Score=289.89 Aligned_cols=306 Identities=14% Similarity=0.085 Sum_probs=244.2
Q ss_pred ccCCCeEEEecccC--CceeeeEEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEE-----EEeCCCCCEE
Q psy9598 450 GPLSRSLMISSHKY--SNLRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLA-----TLRGCSGEIS 522 (1915)
Q Consensus 450 g~~d~~~~i~~~~~--~~~~~~~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~-----~l~gH~~~I~ 522 (1915)
|+.++...+|..+. ..+.....+..| ..+.+++|+|++.++++++.++.|++||+.+++.+. .+.+|.+.|.
T Consensus 95 ~~~~~~~~l~~~d~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~ 173 (433)
T 3bws_A 95 KPEELNEKLIALDKEGITHRFISRFKTG-FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVE 173 (433)
T ss_dssp SGGGGTTCEEECCBTTCSEEEEEEEECS-SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEE
T ss_pred ccCCCceEEEEECCCCCcceEEEEEcCC-CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCcee
Confidence 33444333443333 455666667666 446699999988888888889999999999999887 4458999999
Q ss_pred EEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEE-EEEeCCCeEEEEecccCccccc
Q psy9598 523 DIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYL-ASTSTDGCIGFWKYKLDIDISK 601 (1915)
Q Consensus 523 ~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L-~sgs~DgtI~iWDl~~~~~~~~ 601 (1915)
+++|++++.++++++.|+.|++||+.++..+..+..|...+.+++|+|++ ..| ++++.|+.|++||+.++..+..
T Consensus 174 ~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~i~~~d~~~~~~~~~ 249 (433)
T 3bws_A 174 TISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIR----DLVYCSNWISEDISVIDRKTKLEIRK 249 (433)
T ss_dssp EEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTT----TEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred EEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCC----CEEEEEecCCCcEEEEECCCCcEEEE
Confidence 99999999999999999999999999999999999999999999999943 555 5666899999999987754322
Q ss_pred eeccCccccccccCCCCCceEEEEECCCCcEEEEEe--------CCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcC
Q psy9598 602 TVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGS--------GDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSH 673 (1915)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs--------~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fsp 673 (1915)
+. +...+.+++|+|+|.+|++++ .||.|++||+... .. .....|...+.+++|+|
T Consensus 250 ~~-------------~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~---~~-~~~~~~~~~~~~~~~~~ 312 (433)
T 3bws_A 250 TD-------------KIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKE---KL-IDTIGPPGNKRHIVSGN 312 (433)
T ss_dssp CC-------------CCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTT---EE-EEEEEEEECEEEEEECS
T ss_pred ec-------------CCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCC---cE-EeeccCCCCcceEEECC
Confidence 21 125589999999999999888 5889999998432 22 23335667899999999
Q ss_pred CCCE-EEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEec----------
Q psy9598 674 SHLR-FVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINF---------- 742 (1915)
Q Consensus 674 dg~~-L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~---------- 742 (1915)
++.. +++++.|+.|++||+.+++..... .+...+.+++|+|+|.+|++++..
T Consensus 313 ~g~~l~~~~~~~~~v~v~d~~~~~~~~~~-----------------~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~ 375 (433)
T 3bws_A 313 TENKIYVSDMCCSKIEVYDLKEKKVQKSI-----------------PVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLK 375 (433)
T ss_dssp STTEEEEEETTTTEEEEEETTTTEEEEEE-----------------ECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTS
T ss_pred CCCEEEEEecCCCEEEEEECCCCcEEEEe-----------------cCCCCCCeEEEcCCCCEEEEEecCCCcccccccc
Confidence 9975 566789999999999987644321 134568899999999999988763
Q ss_pred ----CCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEEec-CceEEEEECCC
Q psy9598 743 ----NFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGH-DGLIIIWDILS 796 (1915)
Q Consensus 743 ----Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~-DG~I~IWdl~s 796 (1915)
||.|++||+.+++.+..+.++ ..+.+++|+| ++.+|++++. ||.|+||++..
T Consensus 376 ~g~~dg~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~-dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 376 KGLVLGKVYVIDTTTDTVKEFWEAG-NQPTGLDVSP-DNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp CCSSCCEEEEEETTTTEEEEEEECS-SSEEEEEECT-TSCEEEEEETTTTEEEEEEETT
T ss_pred ccccceEEEEEECCCCcEEEEecCC-CCCceEEEcC-CCCEEEEEECCCCeEEEEEecC
Confidence 469999999999999988874 4689999999 8998888775 99999999863
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.7e-27 Score=322.38 Aligned_cols=262 Identities=22% Similarity=0.297 Sum_probs=215.3
Q ss_pred EEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECC--CCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeE
Q psy9598 511 LATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQ--TLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCI 588 (1915)
Q Consensus 511 ~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~--tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI 588 (1915)
+.++.||.+.|++++|+|++.+|++|+.||+|+|||+. ++..+..+.+|.+.|++++|+|.. ++.+|++|+.||+|
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~--~~~~l~s~s~Dg~I 79 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK--FGTILASCSYDGKV 79 (753)
T ss_dssp ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTT--SCSEEEEEETTSCE
T ss_pred eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCC--CCCEEEEEeCCCeE
Confidence 45678999999999999999999999999999999998 567788899999999999999852 36899999999999
Q ss_pred EEEecccCccccceeccCccccccccCCCCCceEEEEECCC--CcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCe
Q psy9598 589 GFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPG--GLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKV 666 (1915)
Q Consensus 589 ~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspd--g~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V 666 (1915)
++||+.++.... ...+..|...|.+++|+|+ +.+|++|+.||.|++||+.... ......+.+|...|
T Consensus 80 ~vwd~~~~~~~~----------~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~-~~~~~~~~~~~~~v 148 (753)
T 3jro_A 80 LIWKEENGRWSQ----------IAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENG-TTSPIIIDAHAIGV 148 (753)
T ss_dssp EEEEEETTEEEE----------EEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSS-CCCCEEEECCSSCE
T ss_pred EEEECCCCcccc----------cccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCC-CcceeEeecCCCce
Confidence 999998764211 1223457789999999999 9999999999999999995432 23445678899999
Q ss_pred eEEEEcC-------------CCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCC-
Q psy9598 667 DSIQWSH-------------SHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDAS- 732 (1915)
Q Consensus 667 ~sl~fsp-------------dg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spd- 732 (1915)
.+++|+| ++.+|++|+.||.|++||++++..... .......|...|++++|+|+
T Consensus 149 ~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~------------~~~~~~~h~~~V~~l~~sp~~ 216 (753)
T 3jro_A 149 NSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYV------------LESTLEGHSDWVRDVAWSPTV 216 (753)
T ss_dssp EEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEE------------EEEEECCCSSCEEEEEECCCC
T ss_pred EEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccce------------eeeeecCCCCcEEEEEeccCC
Confidence 9999999 589999999999999999987642211 11123457789999999999
Q ss_pred --CCEEEEEEecCCeEEEEECCCCc-----eEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCcc
Q psy9598 733 --DRWVITAINFNFQIKIWDAFNGD-----LVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQ 799 (1915)
Q Consensus 733 --g~~L~t~s~~Dg~I~vwD~~tg~-----~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~ 799 (1915)
+.+|++++. ||.|++||+.++. .+....+|.+.|++++|+| ++.+|++|+.||.|+||++.++..
T Consensus 217 ~~~~~l~s~s~-Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp-dg~~l~s~s~Dg~I~vwd~~~~~~ 288 (753)
T 3jro_A 217 LLRSYLASVSQ-DRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSL-SGNVLALSGGDNKVTLWKENLEGK 288 (753)
T ss_dssp SSSEEEEEEES-SSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECT-TTCCEEEECSSSCEECCBCCSSSC
T ss_pred CCCCEEEEEec-CCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcC-CCCEEEEEcCCCEEEEEecCCCCC
Confidence 889999888 9999999998864 3344456889999999999 999999999999999999986543
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.95 E-value=6.3e-25 Score=274.18 Aligned_cols=330 Identities=10% Similarity=0.024 Sum_probs=249.7
Q ss_pred cccccCCCeEEEecccCCceeeeEEecCCCCcEEEEEEcCCCCEE-EEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEE
Q psy9598 447 EYSGPLSRSLMISSHKYSNLRQHYVNLGHLSAVFCVLFDKLGEVI-VTGADDLLIKLWRARDGKLLATLRGCSGEISDIA 525 (1915)
Q Consensus 447 ~~tg~~d~~~~i~~~~~~~~~~~~~l~gH~~~V~~vafspdg~~L-aTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~La 525 (1915)
.++++.++.+.+|+... .+....+.+|. .+.+++|+|+|++| ++++.|+.|++||+.+++++..+..|. .|.+++
T Consensus 5 ~vs~~~d~~v~v~d~~~--~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~ 80 (391)
T 1l0q_A 5 YIANSESDNISVIDVTS--NKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVA 80 (391)
T ss_dssp EEEETTTTEEEEEETTT--TEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEE
T ss_pred EEEcCCCCEEEEEECCC--CeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceE
Confidence 35677889999997643 34555677774 58999999999987 667789999999999999999988665 899999
Q ss_pred EeCCCCEEEEE-eCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEE-EEEeCCCeEEEEecccCcccccee
Q psy9598 526 IDNRNILLAAG-TVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYL-ASTSTDGCIGFWKYKLDIDISKTV 603 (1915)
Q Consensus 526 fspdg~~LaSg-s~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L-~sgs~DgtI~iWDl~~~~~~~~~~ 603 (1915)
|+|++++|+++ +.++.|++||+.+++.+..+..| ..+.+++|+|++ ..| ++++.++.|++||+.++..+..+.
T Consensus 81 ~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg----~~l~~~~~~~~~v~~~d~~~~~~~~~~~ 155 (391)
T 1l0q_A 81 VSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDG----KKLYVTNNGDKTVSVINTVTKAVINTVS 155 (391)
T ss_dssp ECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTS----SEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred ECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCC----CEEEEEeCCCCEEEEEECCCCcEEEEEe
Confidence 99999987554 56799999999999988888755 468999999943 555 788889999999998875443332
Q ss_pred ccCccccccccCCCCCceEEEEECCCCcEE-EEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEe
Q psy9598 604 FHEPVMFNERIRPGNAHILCSSFSPGGLFL-ATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGS 682 (1915)
Q Consensus 604 ~~~~~~~~~~~~~~~~~V~~l~fspdg~~L-asgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs 682 (1915)
. ...+.+++|+|+|..| ++++.++.|++||+.. ...+..+ .+...+.+++|+|+|.+|++++
T Consensus 156 ~-------------~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~---~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~ 218 (391)
T 1l0q_A 156 V-------------GRSPKGIAVTPDGTKVYVANFDSMSISVIDTVT---NSVIDTV-KVEAAPSGIAVNPEGTKAYVTN 218 (391)
T ss_dssp C-------------CSSEEEEEECTTSSEEEEEETTTTEEEEEETTT---TEEEEEE-ECSSEEEEEEECTTSSEEEEEE
T ss_pred c-------------CCCcceEEECCCCCEEEEEeCCCCEEEEEECCC---CeEEEEE-ecCCCccceEECCCCCEEEEEe
Confidence 2 2457899999999877 6778899999999843 2333333 4567899999999999999888
Q ss_pred ---CCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEE
Q psy9598 683 ---RDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQV 759 (1915)
Q Consensus 683 ---~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~ 759 (1915)
.++.|++||+.+++...... ....+.+++|+|+|.+|++++..|+.|++||+.+++++..
T Consensus 219 ~~~~~~~v~~~d~~~~~~~~~~~-----------------~~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~ 281 (391)
T 1l0q_A 219 VDKYFNTVSMIDTGTNKITARIP-----------------VGPDPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITAT 281 (391)
T ss_dssp ECSSCCEEEEEETTTTEEEEEEE-----------------CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred cCcCCCcEEEEECCCCeEEEEEe-----------------cCCCccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEE
Confidence 68999999998876443221 1224688999999999976665599999999999999999
Q ss_pred eeCCCCCeE---EEE------------EccC-C------C--CEEEEEecCceEEEEECCCCccccceeeeeeecCCCCc
Q psy9598 760 LKGHTNEVF---VLE------------SHPF-D------S--RVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEG 815 (1915)
Q Consensus 760 l~gH~~~V~---sl~------------~sp~-d------g--~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~ 815 (1915)
+..|..+.. .+. |+.. . . -.|...+.|..+++|++..+.. . ....
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~~--~---------~~~~ 350 (391)
T 1l0q_A 282 MAVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGSS--S---------KKQN 350 (391)
T ss_dssp EECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSSSCE--E---------CSSS
T ss_pred EECCcCCCccceeeecccccccccccccccccccccccccceEEEEeCCCCceEEEEECCCCcc--c---------CcCC
Confidence 887765421 112 2210 0 1 2355666788999999987654 1 0111
Q ss_pred ceEEEEEcCCCCEEEEE
Q psy9598 816 ALFDGKWSPDGTTCALT 832 (1915)
Q Consensus 816 ~V~~vafSpdg~~Lasg 832 (1915)
....|+++|.+.+..
T Consensus 351 --~~~~~~~~g~y~~~~ 365 (391)
T 1l0q_A 351 --PTHTYSETGIYTVRL 365 (391)
T ss_dssp --CEECCSSCEEEEEEE
T ss_pred --CeEEeCCCceEEEEE
Confidence 235788999887654
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.94 E-value=7.5e-26 Score=287.61 Aligned_cols=267 Identities=18% Similarity=0.279 Sum_probs=213.7
Q ss_pred EEecCCCCcEEEEEEcCC-CCEEEEEECCCcEEEEECCC----------CcEEEEEeCCCCCEEEEEEeCCCC-EEEEEe
Q psy9598 470 YVNLGHLSAVFCVLFDKL-GEVIVTGADDLLIKLWRARD----------GKLLATLRGCSGEISDIAIDNRNI-LLAAGT 537 (1915)
Q Consensus 470 ~~l~gH~~~V~~vafspd-g~~LaTGs~Dg~I~IWd~~t----------g~~~~~l~gH~~~I~~Lafspdg~-~LaSgs 537 (1915)
..+.+|.+.|++|+|+|+ +.+||+|+.||.|+||++.+ +..+..+.+|...|++|+|+|++. +|++|+
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 201 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS 201 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence 456689999999999997 78999999999999999987 678889999999999999999988 999999
Q ss_pred CCCcEEEEECCCCce-------EEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCcccc
Q psy9598 538 VDKTIRIWNLQTLAP-------ISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMF 610 (1915)
Q Consensus 538 ~DgtIrVWDl~tg~~-------~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~ 610 (1915)
.||+|+||++.++.. ...+.+|...|.+++|+|. ++.+|++++.||.|++||++++.....
T Consensus 202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~---~~~~l~s~~~dg~i~i~d~~~~~~~~~--------- 269 (430)
T 2xyi_A 202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLL---HESLFGSVADDQKLMIWDTRNNNTSKP--------- 269 (430)
T ss_dssp TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSS---CTTEEEEEETTSEEEEEETTCSCSSSC---------
T ss_pred CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCC---CCCEEEEEeCCCeEEEEECCCCCCCcc---------
Confidence 999999999987432 4567789999999999994 358999999999999999987631111
Q ss_pred ccccCCCCCceEEEEECCCCc-EEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCC-EEEEEeCCCcEE
Q psy9598 611 NERIRPGNAHILCSSFSPGGL-FLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHL-RFVSGSRDGTAL 688 (1915)
Q Consensus 611 ~~~~~~~~~~V~~l~fspdg~-~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~-~L~sgs~DG~I~ 688 (1915)
...+..|...|.+++|+|++. +|++|+.||.|+|||++... ..+..+.+|...|.+|+|+|++. +|++|+.||.|+
T Consensus 270 ~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~--~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~ 347 (430)
T 2xyi_A 270 SHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK--LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLH 347 (430)
T ss_dssp SEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT--SCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCE
T ss_pred eeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCC--CCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEE
Confidence 112235678899999999987 68899999999999996432 45667788999999999999985 699999999999
Q ss_pred EEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCC-EEEEEEecCCeEEEEECCC
Q psy9598 689 IWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDR-WVITAINFNFQIKIWDAFN 753 (1915)
Q Consensus 689 IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~-~L~t~s~~Dg~I~vwD~~t 753 (1915)
|||+............. ...........+|...|.+++|+|++. +|++++. ||.|+||++..
T Consensus 348 iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~-dg~i~iw~~~~ 410 (430)
T 2xyi_A 348 VWDLSKIGEEQSTEDAE--DGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSE-DNIMQVWQMAE 410 (430)
T ss_dssp EEEGGGTTCCCCHHHHH--HCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEET-TSEEEEEEECH
T ss_pred EEeCCCCccccCccccc--cCCcceEEEcCCCCCCceEEEECCCCCCEEEEEEC-CCCEEEeEccc
Confidence 99998632110000000 000012223455778899999999999 6777766 99999999864
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.2e-26 Score=281.63 Aligned_cols=275 Identities=14% Similarity=0.039 Sum_probs=209.7
Q ss_pred EEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECC---------CCce
Q psy9598 482 VLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQ---------TLAP 552 (1915)
Q Consensus 482 vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~---------tg~~ 552 (1915)
..+.+++.+|++|+.||+|+|||+.+++.+..+. ...|.++.|+|+ |++|+.|++|++|+.. ++..
T Consensus 42 ~~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~ 116 (343)
T 3lrv_A 42 KSMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKV 116 (343)
T ss_dssp SSSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCE
T ss_pred hhhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcce
Confidence 3445678999999999999999999999888886 567888899988 9999999999999665 5554
Q ss_pred EEEee-cCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCc
Q psy9598 553 ISVLV-GHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGL 631 (1915)
Q Consensus 553 ~~~l~-~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~ 631 (1915)
+..+. +|.+.|.+++|+|.. ++.+|++|+.||+|++||+.++....... ..+...|.+++|+|+|.
T Consensus 117 ~~~~~~~~~~~v~~~~~~~~~--~~~~l~s~s~dg~i~~wd~~~~~~~~~~~-----------~~~~~~i~~~~~~pdg~ 183 (343)
T 3lrv_A 117 LREIEVDSANEIIYMYGHNEV--NTEYFIWADNRGTIGFQSYEDDSQYIVHS-----------AKSDVEYSSGVLHKDSL 183 (343)
T ss_dssp EEEEECCCSSCEEEEECCC-----CCEEEEEETTCCEEEEESSSSCEEEEEC-----------CCSSCCCCEEEECTTSC
T ss_pred eEEeecCCCCCEEEEEcCCCC--CCCEEEEEeCCCcEEEEECCCCcEEEEEe-----------cCCCCceEEEEECCCCC
Confidence 55544 677899999999921 24899999999999999999876422111 12345699999999999
Q ss_pred EEEEEeCCCeEEEEEecCCCCCcee-EEecc-CCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCC
Q psy9598 632 FLATGSGDHHVRVYKMDGVDSPLGI-LEVEE-HSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLP 709 (1915)
Q Consensus 632 ~Lasgs~Dg~I~IwDl~~~~~~~~i-~~l~~-h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~ 709 (1915)
+|++|+.||.|+|||+... ..+ ..+.+ |.+.|.+|+|+|+|.+|++++ |+.|+|||+++........
T Consensus 184 ~lasg~~dg~i~iwd~~~~---~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~------- 252 (343)
T 3lrv_A 184 LLALYSPDGILDVYNLSSP---DQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYP------- 252 (343)
T ss_dssp EEEEECTTSCEEEEESSCT---TSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSC-------
T ss_pred EEEEEcCCCEEEEEECCCC---CCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeec-------
Confidence 9999999999999999543 233 45666 999999999999999999999 5599999998876321110
Q ss_pred CCccccccccccccE--EEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCCCeEEEEEccC--CCCEEEEEec
Q psy9598 710 HTKETSDETNKKIKV--TMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPF--DSRVLLSAGH 785 (1915)
Q Consensus 710 ~~~~~~~~~~~~~~V--~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~--dg~~LaSgs~ 785 (1915)
....+...+ .+++|+|+|.+|++++..|+.|+||++.+....... ..+..++|++. +...|++++.
T Consensus 253 ------~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~ 322 (343)
T 3lrv_A 253 ------TYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCG 322 (343)
T ss_dssp ------CCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE----EEEEECCC----CCCCEEEEEEE
T ss_pred ------ccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe----cCceeEecCccccccceeEEEec
Confidence 000111222 579999999999998766899999998765443333 45667777752 5568999999
Q ss_pred CceEEEEECC
Q psy9598 786 DGLIIIWDIL 795 (1915)
Q Consensus 786 DG~I~IWdl~ 795 (1915)
||.+.++-..
T Consensus 323 d~~~~~~~~~ 332 (343)
T 3lrv_A 323 DGGIAAILKT 332 (343)
T ss_dssp TTEEEEEEEC
T ss_pred CCceEEEEec
Confidence 9999887543
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=6.3e-25 Score=286.66 Aligned_cols=356 Identities=12% Similarity=0.052 Sum_probs=267.6
Q ss_pred EEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEEC--CCCceEEEeecCC
Q psy9598 483 LFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNL--QTLAPISVLVGHQ 560 (1915)
Q Consensus 483 afspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl--~tg~~~~~l~~h~ 560 (1915)
+|+|++.++++++.|++|.+||..+++++.++..+.. +.+++|+|+|++|++++.|++|.+||+ .+++++..+. +.
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~-~g 221 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK-IG 221 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE-CC
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe-cC
Confidence 3789999999999999999999999999999984333 899999999999999999999999999 8899988887 45
Q ss_pred CCeEEEEecc----CccCCCcEEEEEe-CCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCc-EEE
Q psy9598 561 GIITGVNFCP----LEVNGFNYLASTS-TDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGL-FLA 634 (1915)
Q Consensus 561 ~~V~sl~fsp----~~~~d~~~L~sgs-~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~-~La 634 (1915)
..+.+++|+| ++ ++|++++ .+++|.+||..++..+..+...........+ .....+.++.++|++. +++
T Consensus 222 ~~p~~va~sp~~~~dg----~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~-~~~~~v~~i~~s~~~~~~~v 296 (543)
T 1nir_A 222 IEARSVESSKFKGYED----RYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTY-HPEPRVAAIIASHEHPEFIV 296 (543)
T ss_dssp SEEEEEEECCSTTCTT----TEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCE-ESCCCEEEEEECSSSSEEEE
T ss_pred CCcceEEeCCCcCCCC----CEEEEEEccCCeEEEEeccccccceeecccCcccCcccc-ccCCceEEEEECCCCCEEEE
Confidence 5679999998 54 7888877 5899999999888765554432100000000 0123688999999765 566
Q ss_pred EEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEe-CCCcEEEEEccCCceEEeeecccccCCCCcc
Q psy9598 635 TGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGS-RDGTALIWYYKCSQWRFIRLDMNTCLPHTKE 713 (1915)
Q Consensus 635 sgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs-~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~ 713 (1915)
++..++.|.+||+..... ..+..+ .+...+.+++|+|+|++|++++ .+++|.+||+.++++..... ..
T Consensus 297 s~~~~g~i~vvd~~~~~~-l~~~~i-~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~-~g-------- 365 (543)
T 1nir_A 297 NVKETGKVLLVNYKDIDN-LTVTSI-GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVD-VG-------- 365 (543)
T ss_dssp EETTTTEEEEEECTTSSS-CEEEEE-ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEE-CS--------
T ss_pred EECCCCeEEEEEecCCCc-ceeEEe-ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeec-cC--------
Confidence 777889999999954322 222233 3567788999999999876554 68999999999988654321 00
Q ss_pred ccccccccccEEEEEECCCCCEEE-EEEecCCeEEEEECCC-------CceEEEeeCCCCCeEEEEEccCCCCEEEEEe-
Q psy9598 714 TSDETNKKIKVTMVAWDASDRWVI-TAINFNFQIKIWDAFN-------GDLVQVLKGHTNEVFVLESHPFDSRVLLSAG- 784 (1915)
Q Consensus 714 ~~~~~~~~~~V~~va~spdg~~L~-t~s~~Dg~I~vwD~~t-------g~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs- 784 (1915)
...|......+ ++|++..++ ++...|++|.|||+.+ ++++.++.+|.+.+..|++|| ++++|++++
T Consensus 366 ---~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~p-dg~~l~v~~~ 440 (543)
T 1nir_A 366 ---KTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHP-KSSHLYVDTT 440 (543)
T ss_dssp ---SSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCT-TCCEEEECCT
T ss_pred ---CCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCC-CCCcEEEecC
Confidence 11122222223 467744444 4432389999999998 899999999999999999999 999999987
Q ss_pred ------cCceEEEEECCCCccccc-eeeeeee----cCCCCcceEEEEEcCCCCEEEEEe-----CCCeEEEEeCCCCcc
Q psy9598 785 ------HDGLIIIWDILSSKQRGY-KWFHNIV----EGQGEGALFDGKWSPDGTTCALTD-----SYGHLLVYGLGGFKR 848 (1915)
Q Consensus 785 ------~DG~I~IWdl~s~~~~~~-~~~~~~~----~~~~~~~V~~vafSpdg~~Lasg~-----~dG~I~Iwdl~s~~~ 848 (1915)
.+++|.|||+.+++. . ..+. +- ...+...+..+.|+|+|+.|+++. .++.|.|||..++++
T Consensus 441 ~~~~~~~~~~v~v~d~~~~~~--~~~~~~-v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~ 517 (543)
T 1nir_A 441 FNPDARISQSVAVFDLKNLDA--KYQVLP-IAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKL 517 (543)
T ss_dssp TCSSHHHHTCEEEEETTCTTS--CCEEEC-HHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEE
T ss_pred CCCCcccCceEEEEECCCCCC--CeEEee-chhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceE
Confidence 378999999999887 4 2221 10 023356899999999999998773 379999999999999
Q ss_pred cccCCCceeecCCCCe
Q psy9598 849 PQNIPRELFFHTDYRT 864 (1915)
Q Consensus 849 ~~~l~~~~~F~~d~~~ 864 (1915)
...++..-.+.|+|.+
T Consensus 518 ~~~i~~~~~~~p~g~~ 533 (543)
T 1nir_A 518 KAVVKDPRLITPTGKF 533 (543)
T ss_dssp EEEECCTTCCSEEEEE
T ss_pred EEeecCCCccCCCeee
Confidence 9888875555565554
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-25 Score=282.51 Aligned_cols=264 Identities=14% Similarity=0.090 Sum_probs=173.7
Q ss_pred cCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECC--------C
Q psy9598 558 GHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSP--------G 629 (1915)
Q Consensus 558 ~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fsp--------d 629 (1915)
.|...+....+.+ ++.+|++|+.|++|++||+.++....... ...+.+|...|++++|+| +
T Consensus 87 ~~~~~~~~~~~~~----~~~~las~~~d~~v~lw~~~~~~~~~~~~-------~~~~~gH~~~v~~v~~~p~~~~~~~~d 155 (393)
T 4gq1_A 87 LHDGDGNVNSSPV----YSLFLACVCQDNTVRLIITKNETIITQHV-------LGGKSGHHNFVNDIDIADVYSADNRLA 155 (393)
T ss_dssp ----------CCE----EEEEEEEEETTSCEEEEEEETTEEEEEEE-------ECTTTSCSSCEEEEEEEEEECTTCSEE
T ss_pred ccCCCcceeecCC----CCCEEEEEeCCCcEEEEECCCCccceeee-------ecccCCCCCceEEEEEccccccccCCC
Confidence 3444444455555 34899999999999999998775432221 224567899999999998 7
Q ss_pred CcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCC-EEEEEeCCCcEEEEEccCCceEEeeecccccC
Q psy9598 630 GLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHL-RFVSGSRDGTALIWYYKCSQWRFIRLDMNTCL 708 (1915)
Q Consensus 630 g~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~-~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~ 708 (1915)
|.+||+|+.|++|+|||+. ....+..+.+|...|.+++|+|++. +|++|+.||+|++||+.+++............
T Consensus 156 ~~~las~s~D~tv~~Wd~~---~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~ 232 (393)
T 4gq1_A 156 EQVIASVGDDCTLIIWRLT---DEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVK 232 (393)
T ss_dssp EEEEEEEETTSEEEEEEEE---TTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CS
T ss_pred CCEEEEEECCCeEEEEECC---CCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcc
Confidence 8999999999999999994 3345666778999999999999875 79999999999999999876433221110000
Q ss_pred ---------CCCccccccccccccEEEEEEC-CCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCCCeEEEEEc-----
Q psy9598 709 ---------PHTKETSDETNKKIKVTMVAWD-ASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESH----- 773 (1915)
Q Consensus 709 ---------~~~~~~~~~~~~~~~V~~va~s-pdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~s----- 773 (1915)
..........++...+.++.|+ +++..|++++. |+.+++||+.++.....+.+|...+..+.+.
T Consensus 233 ~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~-d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 311 (393)
T 4gq1_A 233 NPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCK-SGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQG 311 (393)
T ss_dssp CCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECT-TSEEEEEEC-------------------CCSCSEEE
T ss_pred cceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeC-CCCEEEEECccCCCCceEeeecCccccEEEcccccc
Confidence 0000112234567788899986 79999999988 9999999999888777777776655544333
Q ss_pred -------------cC-CCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEEeCCCeEE
Q psy9598 774 -------------PF-DSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLL 839 (1915)
Q Consensus 774 -------------p~-dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~dG~I~ 839 (1915)
|. ++.++++|+.||+|+|||+.++.. ...+. .+..+|.+++|||||++||+++.+| +.
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~--~~~~~-----~~~~~V~svafspdG~~LA~as~~G-v~ 383 (393)
T 4gq1_A 312 ISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDS--NSIPI-----QLGMPIVDFCWHQDGSHLAIATEGS-VL 383 (393)
T ss_dssp ECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTC--CEEEE-----ECSSCEEEEEECTTSSEEEEEESSE-EE
T ss_pred ccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcE--EEEec-----CCCCcEEEEEEcCCCCEEEEEeCCC-eE
Confidence 22 344677888999999999999887 44443 4567999999999999999998765 55
Q ss_pred EEeCC
Q psy9598 840 VYGLG 844 (1915)
Q Consensus 840 Iwdl~ 844 (1915)
+|.+.
T Consensus 384 lvrL~ 388 (393)
T 4gq1_A 384 LTRLM 388 (393)
T ss_dssp EEEEG
T ss_pred EEEEe
Confidence 55544
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.94 E-value=4.9e-26 Score=285.79 Aligned_cols=276 Identities=13% Similarity=0.071 Sum_probs=189.9
Q ss_pred ecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEE-----EEeCCCCCEEEEEEeC--------CCCEEEEEeC
Q psy9598 472 NLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLA-----TLRGCSGEISDIAIDN--------RNILLAAGTV 538 (1915)
Q Consensus 472 l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~-----~l~gH~~~I~~Lafsp--------dg~~LaSgs~ 538 (1915)
..+|...+....+++++.+||+|+.|++|+|||+.++.... .+.||.+.|++|+|+| ++++|||||.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~ 164 (393)
T 4gq1_A 85 ENLHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGD 164 (393)
T ss_dssp CC----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEET
T ss_pred ccccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEEC
Confidence 34566666667777888899999999999999999886543 4679999999999998 7899999999
Q ss_pred CCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceecc-------------
Q psy9598 539 DKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFH------------- 605 (1915)
Q Consensus 539 DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~------------- 605 (1915)
|++|+|||+.++.++..+.+|...|.+++|+|.. ..+|++|+.||+|++||+.++.........
T Consensus 165 D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~---~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~ 241 (393)
T 4gq1_A 165 DCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSN---PNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNT 241 (393)
T ss_dssp TSEEEEEEEETTEEEEEEEECSSCEEEEEEETTE---EEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEES
T ss_pred CCeEEEEECCCCceeeeecCCCCCcEEEEECCCC---CceEEecCCCCEEEEEECCCCcccccccccCCcccceEEeccc
Confidence 9999999999999998899999999999999943 468999999999999999887643322111
Q ss_pred CccccccccCCCCCceEEEEEC-CCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCC
Q psy9598 606 EPVMFNERIRPGNAHILCSSFS-PGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRD 684 (1915)
Q Consensus 606 ~~~~~~~~~~~~~~~V~~l~fs-pdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~D 684 (1915)
.+........+|...+.++.|+ ++|..|++++.|+.|++||+... .....+..|...+..+.+.+++..+...
T Consensus 242 ~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~--- 315 (393)
T 4gq1_A 242 LPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFAN---NDYNEISDSTMKLGPKNLLPNVQGISLF--- 315 (393)
T ss_dssp GGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC----------------------CCSCSEEEECSS---
T ss_pred ccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccC---CCCceEeeecCccccEEEcccccccccc---
Confidence 0111112234677888999987 79999999999999999999432 2334455677677776666653321110
Q ss_pred CcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCC
Q psy9598 685 GTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHT 764 (1915)
Q Consensus 685 G~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~ 764 (1915)
...+..+.+.+.+..++++++.||.|+|||+.++.++..+.+|.
T Consensus 316 ------------------------------------~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~ 359 (393)
T 4gq1_A 316 ------------------------------------PSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLG 359 (393)
T ss_dssp ------------------------------------CCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECS
T ss_pred ------------------------------------CcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCC
Confidence 11112233334455555555559999999999999999999999
Q ss_pred CCeEEEEEccCCCCEEEEEecCceEEEEEC
Q psy9598 765 NEVFVLESHPFDSRVLLSAGHDGLIIIWDI 794 (1915)
Q Consensus 765 ~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl 794 (1915)
..|.+|+|+| +|++||+++.+| |.+|.+
T Consensus 360 ~~V~svafsp-dG~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 360 MPIVDFCWHQ-DGSHLAIATEGS-VLLTRL 387 (393)
T ss_dssp SCEEEEEECT-TSSEEEEEESSE-EEEEEE
T ss_pred CcEEEEEEcC-CCCEEEEEeCCC-eEEEEE
Confidence 9999999999 999999998776 556655
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-25 Score=276.80 Aligned_cols=278 Identities=8% Similarity=-0.001 Sum_probs=211.4
Q ss_pred EEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceec
Q psy9598 525 AIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVF 604 (1915)
Q Consensus 525 afspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~ 604 (1915)
.+.+++.+|++|+.||+|+|||+.+++.+..+. ...|.++.|+| . +++|+.|++|++|+......+. ..
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~------~-~~s~s~D~~i~~w~~~~~~~~~--~~ 111 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHP------A-IISRGPCNRLLLLYPGNQITIL--DS 111 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCC------S-EEEECSTTEEEEEETTTEEEEE--ET
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCC------c-eEEecCCCeEEEEEccCceEEe--ec
Confidence 345678899999999999999999999988886 56788888988 2 9999999999999877532111 11
Q ss_pred cCccccccccCCCCCceEEEEECC--CCcEEEEEeCCCeEEEEEecCCCCCceeEEe-ccCCCCeeEEEEcCCCCEEEEE
Q psy9598 605 HEPVMFNERIRPGNAHILCSSFSP--GGLFLATGSGDHHVRVYKMDGVDSPLGILEV-EEHSDKVDSIQWSHSHLRFVSG 681 (1915)
Q Consensus 605 ~~~~~~~~~~~~~~~~V~~l~fsp--dg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l-~~h~~~V~sl~fspdg~~L~sg 681 (1915)
............|...|.+++|+| ++.+|++|+.||.|++||+... ..+... ..|...|.+++|+|+|.+|++|
T Consensus 112 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~---~~~~~~~~~~~~~i~~~~~~pdg~~lasg 188 (343)
T 3lrv_A 112 KTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDD---SQYIVHSAKSDVEYSSGVLHKDSLLLALY 188 (343)
T ss_dssp TTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSS---CEEEEECCCSSCCCCEEEECTTSCEEEEE
T ss_pred CCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCC---cEEEEEecCCCCceEEEEECCCCCEEEEE
Confidence 111111122235667899999999 9999999999999999999532 333333 3456689999999999999999
Q ss_pred eCCCcEEEEEccCCceEEeeecccccCCCCccccccc-cccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEe
Q psy9598 682 SRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDET-NKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVL 760 (1915)
Q Consensus 682 s~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l 760 (1915)
+.||.|+|||++++..... ... .|...|++++|+|+|.+|++++. +.|++||++++..+..+
T Consensus 189 ~~dg~i~iwd~~~~~~~~~---------------~~~~~h~~~v~~l~fs~~g~~l~s~~~--~~v~iwd~~~~~~~~~~ 251 (343)
T 3lrv_A 189 SPDGILDVYNLSSPDQASS---------------RFPVDEEAKIKEVKFADNGYWMVVECD--QTVVCFDLRKDVGTLAY 251 (343)
T ss_dssp CTTSCEEEEESSCTTSCCE---------------ECCCCTTSCEEEEEECTTSSEEEEEES--SBEEEEETTSSTTCBSS
T ss_pred cCCCEEEEEECCCCCCCcc---------------EEeccCCCCEEEEEEeCCCCEEEEEeC--CeEEEEEcCCCCcceee
Confidence 9999999999998763210 112 36789999999999999999984 49999999998876665
Q ss_pred eC---CCCCeE--EEEEccCCCCEEEEEec-CceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcC---CCCEEEE
Q psy9598 761 KG---HTNEVF--VLESHPFDSRVLLSAGH-DGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSP---DGTTCAL 831 (1915)
Q Consensus 761 ~g---H~~~V~--sl~~sp~dg~~LaSgs~-DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSp---dg~~Las 831 (1915)
.. |...+. +++|+| ++.+|++|+. |+.|+||++..... . +. ..++..++|++ ++..|++
T Consensus 252 ~~~~~~~~~~~~~~~~~~~-~g~~l~~~s~~d~~i~v~~~~~~~~--~--~~-------~~~~~~~~~~~~~~~~~~l~~ 319 (343)
T 3lrv_A 252 PTYTIPEFKTGTVTYDIDD-SGKNMIAYSNESNSLTIYKFDKKTK--N--WT-------KDEESALCLQSDTADFTDMDV 319 (343)
T ss_dssp CCCBC-----CCEEEEECT-TSSEEEEEETTTTEEEEEEECTTTC--S--EE-------EEEEEECCC----CCCCEEEE
T ss_pred cccccccccccceEEEECC-CCCEEEEecCCCCcEEEEEEccccc--c--eE-------ecCceeEecCccccccceeEE
Confidence 54 444444 699999 9999999998 99999999976654 2 11 04577888988 8999999
Q ss_pred EeCCCeEEEEeCCC
Q psy9598 832 TDSYGHLLVYGLGG 845 (1915)
Q Consensus 832 g~~dG~I~Iwdl~s 845 (1915)
++.||.+.++-...
T Consensus 320 ~~~d~~~~~~~~~~ 333 (343)
T 3lrv_A 320 VCGDGGIAAILKTN 333 (343)
T ss_dssp EEETTEEEEEEECS
T ss_pred EecCCceEEEEecC
Confidence 99999998885443
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.94 E-value=5.3e-24 Score=253.79 Aligned_cols=301 Identities=15% Similarity=0.129 Sum_probs=214.0
Q ss_pred CceeeeEEecCCCCc----EEEEEEcCCCC---EEEEEECCCcEEEEECCCC---cEEEEEeCCCCCEEEEEEeCCCCEE
Q psy9598 464 SNLRQHYVNLGHLSA----VFCVLFDKLGE---VIVTGADDLLIKLWRARDG---KLLATLRGCSGEISDIAIDNRNILL 533 (1915)
Q Consensus 464 ~~~~~~~~l~gH~~~----V~~vafspdg~---~LaTGs~Dg~I~IWd~~tg---~~~~~l~gH~~~I~~Lafspdg~~L 533 (1915)
.+++++..|..-.+. |.++-|-.-|- .|++++.. .|++|+..++ ++++++.+|..+|..|.|.||..-|
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 101 (356)
T 2w18_A 23 GNLQLVSELKNPSGSCSVDVSAMFWERAGCKEPCIITACED-VVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNL 101 (356)
T ss_dssp -CEEEEEEECCCCSSCEEEEEEEEEC----CEEEEEEEESS-EEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSC
T ss_pred ceeeeeehhcCCCCCeEEEEeeeeeccCCCCccEEEEeccc-eEEEcccCCCccceeeEEEeccCceeEEEEEcCcccce
Confidence 345555566543332 34444544333 57777765 9999999999 8999999999999999999985433
Q ss_pred EEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccc
Q psy9598 534 AAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNER 613 (1915)
Q Consensus 534 aSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~ 613 (1915)
+... .=.-+...|.+|+|+|+...-+.++++++.+ +.+|++.
T Consensus 102 ~~~~-----------------~~~~~~~~v~sla~spd~~~~~~~l~s~g~~--~~v~~l~------------------- 143 (356)
T 2w18_A 102 VCVA-----------------LGNLEIREIRALFCSSDDESEKQVLLKSGNI--KAVLGLT------------------- 143 (356)
T ss_dssp EEEE-----------------ECSSSEEEEEEECC------CCEEEEEEEEE--EEEEEET-------------------
T ss_pred eeee-----------------eccccccceEEEEECCCccccccEEEeCCCe--EEEEecC-------------------
Confidence 3211 1112566889999999522225889998844 7777643
Q ss_pred cCCCCCceEEEEECCCCcEEEEEe--CCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcC---CCCEEEEEeCCCcEE
Q psy9598 614 IRPGNAHILCSSFSPGGLFLATGS--GDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSH---SHLRFVSGSRDGTAL 688 (1915)
Q Consensus 614 ~~~~~~~V~~l~fspdg~~Lasgs--~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fsp---dg~~L~sgs~DG~I~ 688 (1915)
+|+++.+++ .|+.|++|++.. ....+..+.+|...+..++|++ ++.+|++|+.|++|+
T Consensus 144 ---------------~g~lv~ss~~g~d~~V~~~~~s~--dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIk 206 (356)
T 2w18_A 144 ---------------KRRLVSSSGTLSDQQVEVMTFAE--DGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIV 206 (356)
T ss_dssp ---------------TTEEEEEESSSTTCEEEEEEECT--TSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEE
T ss_pred ---------------CCcEEEecccCCCCcEEEEEECC--CCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEE
Confidence 333444433 588999999832 2345667778999999999999 779999999999999
Q ss_pred EEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEE-----------EEecCCeEEEEECCCCceE
Q psy9598 689 IWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVIT-----------AINFNFQIKIWDAFNGDLV 757 (1915)
Q Consensus 689 IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t-----------~s~~Dg~I~vwD~~tg~~i 757 (1915)
|||+.+++++..... ...+...+.+++|+|+|.++++ +++.|++|++||..++.++
T Consensus 207 IWDl~TGk~l~tL~g-------------~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l 273 (356)
T 2w18_A 207 IWNLKTGQLLKKMHI-------------DDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSV 273 (356)
T ss_dssp EEETTTCCEEEEEEC-------------CC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEE
T ss_pred EEECCCCcEEEEEcC-------------CCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEE
Confidence 999999987664321 0112346788899999988743 2334999999999999988
Q ss_pred EEe-----eCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCc-ceEEEEEcCCCCEEEE
Q psy9598 758 QVL-----KGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEG-ALFDGKWSPDGTTCAL 831 (1915)
Q Consensus 758 ~~l-----~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~-~V~~vafSpdg~~Las 831 (1915)
.++ .+|...+.+..+ ++.++++|+.||+|+|||+.++++ +..+. .|.. .+..++|||||++||+
T Consensus 274 ~v~~~~~p~Gh~~~~lsg~~---sg~~lASgS~DgTIkIWDl~tGk~--l~tL~-----gH~~~vvs~vafSPDG~~LaS 343 (356)
T 2w18_A 274 GVMLYCLPPGQAGRFLEGDV---KDHCAAAILTSGTIAIWDLLLGQC--TALLP-----PVSDQHWSFVKWSGTDSHLLA 343 (356)
T ss_dssp EEEEECCCTTCCCCEEEEEE---ETTEEEEEETTSCEEEEETTTCSE--EEEEC-----CC--CCCCEEEECSSSSEEEE
T ss_pred EEEEeeccCCCcceeEcccc---CCCEEEEEcCCCcEEEEECCCCcE--EEEec-----CCCCCeEEEEEECCCCCEEEE
Confidence 776 478776555444 368999999999999999999998 66654 3334 4456899999999999
Q ss_pred EeCCCeEEEEeC
Q psy9598 832 TDSYGHLLVYGL 843 (1915)
Q Consensus 832 g~~dG~I~Iwdl 843 (1915)
|+.|++|+||++
T Consensus 344 GS~D~TIklWd~ 355 (356)
T 2w18_A 344 GQKDGNIFVYHY 355 (356)
T ss_dssp ECTTSCEEEEEE
T ss_pred EECCCcEEEecC
Confidence 999999999985
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=6.1e-24 Score=300.07 Aligned_cols=369 Identities=14% Similarity=0.079 Sum_probs=275.7
Q ss_pred CeEEEecccCCceeeeEEecCCCCcEEEEEEcCCCCEEEEEECC------CcEEEEECCCCcEEEEEeCCCCCE------
Q psy9598 454 RSLMISSHKYSNLRQHYVNLGHLSAVFCVLFDKLGEVIVTGADD------LLIKLWRARDGKLLATLRGCSGEI------ 521 (1915)
Q Consensus 454 ~~~~i~~~~~~~~~~~~~l~gH~~~V~~vafspdg~~LaTGs~D------g~I~IWd~~tg~~~~~l~gH~~~I------ 521 (1915)
+.+.+|...... .+.|.+|...|.+++|||||++||+++.+ ..|.+|++.++. ...+.+|...+
T Consensus 33 ~~l~~~~~~gg~---~~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~-~~~lt~~~~~~~~~~~~ 108 (1045)
T 1k32_A 33 DDLWEHDLKSGS---TRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE-IKRITYFSGKSTGRRMF 108 (1045)
T ss_dssp TEEEEEETTTCC---EEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE-EEECCCCCEEEETTEEC
T ss_pred CcEEEEECCCCc---EEEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCC-eEEcccCCCcccccccc
Confidence 456666543332 35678999999999999999999988654 379999998876 57788899888
Q ss_pred -EEEEEeCCCCEEEEEeCC------CcEEEEECCCCceE-----------------------------------------
Q psy9598 522 -SDIAIDNRNILLAAGTVD------KTIRIWNLQTLAPI----------------------------------------- 553 (1915)
Q Consensus 522 -~~Lafspdg~~LaSgs~D------gtIrVWDl~tg~~~----------------------------------------- 553 (1915)
.+++|+|||+++++++.+ ..|.+|++.++...
T Consensus 109 ~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw 188 (1045)
T 1k32_A 109 TDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIW 188 (1045)
T ss_dssp SEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEE
T ss_pred cccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEE
Confidence 999999999988887754 35778887655422
Q ss_pred --------EEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCc-cccceeccCccccccccCCCCCceEEE
Q psy9598 554 --------SVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDI-DISKTVFHEPVMFNERIRPGNAHILCS 624 (1915)
Q Consensus 554 --------~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~-~~~~~~~~~~~~~~~~~~~~~~~V~~l 624 (1915)
..+.+|.+.+.++.|++ + .++++++.+|++.+|.+.... ....+ ..+ ..+.++
T Consensus 189 ~~~~~~~~~~l~~~~~~v~~~~~s~----d-~l~~~~~~dg~~~l~~~~~~g~~~~~l------------~~~-~~~~~~ 250 (1045)
T 1k32_A 189 IEVNSGAFKKIVDMSTHVSSPVIVG----H-RIYFITDIDGFGQIYSTDLDGKDLRKH------------TSF-TDYYPR 250 (1045)
T ss_dssp EEEETTEEEEEECCSSCCEEEEEET----T-EEEEEECTTSSCEEEEEETTSCSCEEC------------CCC-CSSCEE
T ss_pred EECCCCCeEECcCCCCcccceEEeC----C-EEEEEEeccCceEEEEEeCCCCcceEe------------cCC-CCccee
Confidence 12345677788888876 2 577778888999999876422 11111 112 235667
Q ss_pred EECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEecc-----------CCCCeeEEEEc-CCCCEEEEEeCCCcEEEEEc
Q psy9598 625 SFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEE-----------HSDKVDSIQWS-HSHLRFVSGSRDGTALIWYY 692 (1915)
Q Consensus 625 ~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~-----------h~~~V~sl~fs-pdg~~L~sgs~DG~I~IWDl 692 (1915)
+|+|+|.+|+++ .++.|.+|++.. ..+..+.+ |...+.+++|+ |+|.+|++++ ++.|.+|++
T Consensus 251 ~~SpDG~~la~~-~~~~i~~~d~~~----~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~ 324 (1045)
T 1k32_A 251 HLNTDGRRILFS-KGGSIYIFNPDT----EKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDV 324 (1045)
T ss_dssp EEEESSSCEEEE-ETTEEEEECTTT----CCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECT
T ss_pred eEcCCCCEEEEE-eCCEEEEecCCc----eEeeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcC
Confidence 999999999887 489999999821 22233433 44579999999 9999999887 889999998
Q ss_pred cCCceEEeeecccccCCCCccccccccccc-cEEEEEECCCCCEEEEEEecCCeEE-EEECCCCceEEEeeCCCCCeEEE
Q psy9598 693 KCSQWRFIRLDMNTCLPHTKETSDETNKKI-KVTMVAWDASDRWVITAINFNFQIK-IWDAFNGDLVQVLKGHTNEVFVL 770 (1915)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~V~~va~spdg~~L~t~s~~Dg~I~-vwD~~tg~~i~~l~gH~~~V~sl 770 (1915)
..+.... ...+.. .+..++|+ +|..|++++. ++.|. +|++.++..... .+|...+..+
T Consensus 325 ~~~~~~~-----------------~~~~~~~~~~~~~~s-dg~~l~~~s~-~~~l~~~~d~~~~~~~~l-~~~~~~~~~~ 384 (1045)
T 1k32_A 325 SGTYVLK-----------------VPEPLRIRYVRRGGD-TKVAFIHGTR-EGDFLGIYDYRTGKAEKF-EENLGNVFAM 384 (1045)
T ss_dssp TSSBEEE-----------------CSCCSCEEEEEECSS-SEEEEEEEET-TEEEEEEEETTTCCEEEC-CCCCCSEEEE
T ss_pred CCCceEE-----------------ccCCCcceEEeeeEc-CCCeEEEEEC-CCceEEEEECCCCCceEe-cCCccceeee
Confidence 7765322 112334 78899999 9999999887 88899 999988766544 4888899999
Q ss_pred EEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEEeCCC----------eEEE
Q psy9598 771 ESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYG----------HLLV 840 (1915)
Q Consensus 771 ~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~dG----------~I~I 840 (1915)
+|+| ++++|++++.++.|++||+.+++. ...+. .+.+.+.+++|||||++||+++.++ .|++
T Consensus 385 ~~Sp-DG~~la~~~~~~~v~~~d~~tg~~--~~~~~-----~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l 456 (1045)
T 1k32_A 385 GVDR-NGKFAVVANDRFEIMTVDLETGKP--TVIER-----SREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHV 456 (1045)
T ss_dssp EECT-TSSEEEEEETTSEEEEEETTTCCE--EEEEE-----CSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEE
T ss_pred EECC-CCCEEEEECCCCeEEEEECCCCce--EEecc-----CCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEE
Confidence 9999 999999999999999999998876 33332 3567889999999999999887654 8999
Q ss_pred EeCCCCcccccCCC------ceeecCCCCeeeecC-CCccceeecc
Q psy9598 841 YGLGGFKRPQNIPR------ELFFHTDYRTLNRPN-GLFEPTYDEV 879 (1915)
Q Consensus 841 wdl~s~~~~~~l~~------~~~F~~d~~~Lv~~~-~~~~~v~D~~ 879 (1915)
|++.+++ ...+.. .+.|++|++.|+..+ .....+|+..
T Consensus 457 ~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~ 501 (1045)
T 1k32_A 457 YDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRV 501 (1045)
T ss_dssp EETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSS
T ss_pred EECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchh
Confidence 9999876 333322 467999999887433 2334456544
|
| >3q2e_A Bromodomain and WD repeat-containing protein 1; structural genomics consortium, SGC, cell cycle progression, signal transduction, apoptosis; 1.74A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=4e-25 Score=226.96 Aligned_cols=112 Identities=46% Similarity=0.913 Sum_probs=104.1
Q ss_pred CchhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCccccCCCcCCHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhhc
Q psy9598 114 RPFNWKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYN 193 (1915)
Q Consensus 114 ~~~~~~~~~~~il~~l~~~~~~~~F~~pvd~~~~pdY~~iIk~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~Lif~N~~~yN 193 (1915)
....|++.|..||+.|++++.++||++||+...+||||+||++||||+||++||+++.|.++++|..||+|||.||+.||
T Consensus 7 ~~~~~~~~c~~il~~l~~~~~s~~F~~pv~~~~~pdY~~~I~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN 86 (123)
T 3q2e_A 7 VESNWKKQCKELVNLIFQCEDSEPFRQPVDLVEYPDYRDIIDTPMDFGTVRETLDAGNYDSPLEFCKDIRLIFSNAKAYT 86 (123)
T ss_dssp ---CHHHHHHHHHHHHHTSGGGGGGSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHHHhCCCcHhhcCCCChhhcCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 34679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy9598 194 QNKRSKIYIMTTRLSEFAEEHLRRLTVRWNSH 225 (1915)
Q Consensus 194 ~~~~s~i~~~a~~l~~~f~~~~~~~~~~~~~~ 225 (1915)
++++|.||.+|..|+++|+++|+.+...++..
T Consensus 87 ~~~~s~i~~~A~~L~~~f~~~~~~~~~~~~~~ 118 (123)
T 3q2e_A 87 PNKRSKIYSMTLRLSALFEEKMKKISSDFKIG 118 (123)
T ss_dssp CCTTSHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 96459999999999999999999999998643
|
| >3g0l_A Hwalp4, bromodomain adjacent to zinc finger domain protei; BAZB2, KIAA1 WALP4, structural genomics consortium, SGC, transcription; 2.03A {Homo sapiens} PDB: 3q2f_A* 2e7o_A | Back alignment and structure |
|---|
Probab=99.91 E-value=8e-25 Score=223.06 Aligned_cols=107 Identities=27% Similarity=0.405 Sum_probs=101.6
Q ss_pred CCchhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCccccCCCcCCHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhh
Q psy9598 113 KRPFNWKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNY 192 (1915)
Q Consensus 113 ~~~~~~~~~~~~il~~l~~~~~~~~F~~pvd~~~~pdY~~iIk~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~Lif~N~~~y 192 (1915)
+......+.|..||+.|++++.++||.+|||...+||||++|++||||+||++||+++.|.++++|..||+|||.||+.|
T Consensus 9 ~~~~~~~~~c~~il~~l~~~~~s~~F~~pv~~~~~pdY~~~I~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~y 88 (117)
T 3g0l_A 9 RDDSKDLALCSMILTEMETHEDAWPFLLPVNLKLVPGYKKVIKKPMDFSTIREKLSSGQYPNLETFALDVRLVFDNCETF 88 (117)
T ss_dssp CCCTTHHHHHHHHHHHHHTSTTCGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhCCCchhhcCcCChhhcCChHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 34456778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy9598 193 NQNKRSKIYIMTTRLSEFAEEHLRRLTV 220 (1915)
Q Consensus 193 N~~~~s~i~~~a~~l~~~f~~~~~~~~~ 220 (1915)
|+++ |.+|.+|..|+++|+++|+++..
T Consensus 89 N~~~-s~~~~~A~~L~~~f~~~~~~~~~ 115 (117)
T 3g0l_A 89 NEDD-SDIGRAGHNMRKYFEKKWTDTFK 115 (117)
T ss_dssp SCSS-SHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCC-CHHHHHHHHHHHHHHHHHHHHHc
Confidence 9977 99999999999999999999864
|
| >3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain interacting protein, DCAF14 DDB1 and CUL4 associated factor 14, SGC; 2.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=4.7e-25 Score=230.53 Aligned_cols=113 Identities=47% Similarity=0.872 Sum_probs=107.1
Q ss_pred CCchhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCccccCCCcCCHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhh
Q psy9598 113 KRPFNWKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNY 192 (1915)
Q Consensus 113 ~~~~~~~~~~~~il~~l~~~~~~~~F~~pvd~~~~pdY~~iIk~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~Lif~N~~~y 192 (1915)
.....|++.|..||+.|++++.++||.+|||...+||||+||++||||+||++||+++.|.++++|..||+|||.||++|
T Consensus 17 ~~~~~l~~~~~~il~~l~~~~~s~~F~~pv~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~y 96 (135)
T 3mb3_A 17 YDIQAWKKQCEELLNLIFQCEDSEPFRQPVDLLEYPDYRDIIDTPMDFATVRETLEAGNYESPMELCKDVRLIFSNSKAY 96 (135)
T ss_dssp CCSSTHHHHHHHHHHHHHHSGGGGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHhCCCChhhcCCCChhhCCCHHHHhCCCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy9598 193 NQNKRSKIYIMTTRLSEFAEEHLRRLTVRWNSH 225 (1915)
Q Consensus 193 N~~~~s~i~~~a~~l~~~f~~~~~~~~~~~~~~ 225 (1915)
|++++|.||.+|..|+++|+++|+.+...++..
T Consensus 97 N~~~~s~i~~~A~~L~~~f~~~~~~~~~~~~~~ 129 (135)
T 3mb3_A 97 TPSKRSRIYSMSLRLSAFFEEHISSVLSDYKSA 129 (135)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 997349999999999999999999999998643
|
| >3d7c_A General control of amino acid synthesis protein 5; GCN5, bromodomain, structural genomics consortium, SGC, HOST-virus interaction, nucleus; 2.06A {Homo sapiens} SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A* 1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A | Back alignment and structure |
|---|
Probab=99.91 E-value=6.8e-25 Score=221.55 Aligned_cols=105 Identities=30% Similarity=0.467 Sum_probs=100.9
Q ss_pred CchhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCccccCCCcCCHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhhc
Q psy9598 114 RPFNWKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYN 193 (1915)
Q Consensus 114 ~~~~~~~~~~~il~~l~~~~~~~~F~~pvd~~~~pdY~~iIk~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~Lif~N~~~yN 193 (1915)
.+..|...|..||+.|++++.++||++|||..++||||+||++||||+||++||++|.|.++++|.+||+|||.||++||
T Consensus 4 ~~~~l~~~~~~il~~l~~~~~~~~F~~pvd~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN 83 (112)
T 3d7c_A 4 DPDQLYTTLKNLLAQIKSHPSAWPFMEPVKKSEAPDYYEVIRFPIDLKTMTERLRSRYYVTRKLFVADLQRVIANCREYN 83 (112)
T ss_dssp SHHHHHHHHHHHHHHHHHSGGGGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHHHcCCCchhhcCCCCcccccCHHHHccCCcCHHHHHHHHcCCCCcCHHHHHHHHHHHHHHHHHHC
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy9598 194 QNKRSKIYIMTTRLSEFAEEHLRRLT 219 (1915)
Q Consensus 194 ~~~~s~i~~~a~~l~~~f~~~~~~~~ 219 (1915)
+++ |.+|.+|..|++.|+++|+++.
T Consensus 84 ~~~-s~~~~~A~~L~~~f~~~~~~~~ 108 (112)
T 3d7c_A 84 PPD-SEYCRCASALEKFFYFKLKEGG 108 (112)
T ss_dssp CTT-SHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCC-CHHHHHHHHHHHHHHHHHHHCC
Confidence 977 9999999999999999998763
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.91 E-value=5.8e-23 Score=259.71 Aligned_cols=301 Identities=14% Similarity=0.074 Sum_probs=231.8
Q ss_pred CCcEEEEEEcCCCC-EEEEEE----CCC----cEEEEEC--CCCcEE--EEEeCCCCCEEEEEEeC--------------
Q psy9598 476 LSAVFCVLFDKLGE-VIVTGA----DDL----LIKLWRA--RDGKLL--ATLRGCSGEISDIAIDN-------------- 528 (1915)
Q Consensus 476 ~~~V~~vafspdg~-~LaTGs----~Dg----~I~IWd~--~tg~~~--~~l~gH~~~I~~Lafsp-------------- 528 (1915)
...|...+|++.|. ++++|+ .+| .|+|||+ .+++++ ..+.+|...+..+++++
T Consensus 62 ~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~ 141 (415)
T 2hqs_A 62 AQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGA 141 (415)
T ss_dssp GGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCC
T ss_pred ccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCc
Confidence 35677888888774 666886 467 8999999 999887 55889999888888775
Q ss_pred CCCEEEEEeCC------CcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCC---eEEEEecccCccc
Q psy9598 529 RNILLAAGTVD------KTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDG---CIGFWKYKLDIDI 599 (1915)
Q Consensus 529 dg~~LaSgs~D------gtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~Dg---tI~iWDl~~~~~~ 599 (1915)
.+..|+.++.+ +.|++||+.. .....+.+|...|.+++|+|+ +..|++++.++ .|++||+.++...
T Consensus 142 ~~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~~~v~~~~~Spd----g~~la~~s~~~~~~~i~~~d~~tg~~~ 216 (415)
T 2hqs_A 142 FRTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQPLMSPAWSPD----GSKLAYVTFESGRSALVIQTLANGAVR 216 (415)
T ss_dssp TTCEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEESSCEEEEEECTT----SSEEEEEECTTSSCEEEEEETTTCCEE
T ss_pred CCCEEEEEEecCCCCccceEEEEcCCC-CCCEEEeCCCCcceeeEEcCC----CCEEEEEEecCCCcEEEEEECCCCcEE
Confidence 15566666654 7999999974 556778889999999999994 58999999875 9999999887532
Q ss_pred cceeccCccccccccCCCCCceEEEEECCCCcEEE-EEeCCCe--EEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCC
Q psy9598 600 SKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLA-TGSGDHH--VRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHL 676 (1915)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~La-sgs~Dg~--I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~ 676 (1915)
. +..+...+.+++|+|+|+.|+ +++.++. |++||+.+. ....+..|...+.+++|+|+|.
T Consensus 217 ~-------------l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~----~~~~l~~~~~~~~~~~~spdg~ 279 (415)
T 2hqs_A 217 Q-------------VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASG----QIRQVTDGRSNNTEPTWFPDSQ 279 (415)
T ss_dssp E-------------EECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC----CEEECCCCSSCEEEEEECTTSS
T ss_pred E-------------eecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCC----CEEeCcCCCCcccceEECCCCC
Confidence 1 112346789999999999887 6666654 889998432 2356778889999999999999
Q ss_pred EEEEEeC-CC--cEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecC--CeEEEEEC
Q psy9598 677 RFVSGSR-DG--TALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFN--FQIKIWDA 751 (1915)
Q Consensus 677 ~L~sgs~-DG--~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~D--g~I~vwD~ 751 (1915)
+|++++. +| .|.+||+.++.... ...+...+.+++|+|+|++|++++..+ +.|++||+
T Consensus 280 ~l~~~s~~~g~~~i~~~d~~~~~~~~-----------------l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~ 342 (415)
T 2hqs_A 280 NLAFTSDQAGRPQVYKVNINGGAPQR-----------------ITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDL 342 (415)
T ss_dssp EEEEEECTTSSCEEEEEETTSSCCEE-----------------CCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEET
T ss_pred EEEEEECCCCCcEEEEEECCCCCEEE-----------------EecCCCcccCeEECCCCCEEEEEECcCCceEEEEEEC
Confidence 9988886 45 57777877665221 112345688999999999999988732 58999999
Q ss_pred CCCceEEEeeCCCCCeEEEEEccCCCCEEEEEecCc---eEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCC
Q psy9598 752 FNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDG---LIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDG 826 (1915)
Q Consensus 752 ~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG---~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg 826 (1915)
.++++. .+..|. .+.+++|+| ++.+|++++.++ .|++||+..+.. ..+. .+.+.|.+++|+|--
T Consensus 343 ~~~~~~-~l~~~~-~~~~~~~sp-dg~~l~~~s~~~~~~~l~~~d~~g~~~---~~l~-----~~~~~v~~~~~~~~~ 409 (415)
T 2hqs_A 343 ATGGVQ-VLSSTF-LDETPSLAP-NGTMVIYSSSQGMGSVLNLVSTDGRFK---ARLP-----ATDGQVKFPAWSPYL 409 (415)
T ss_dssp TTCCEE-ECCCSS-SCEEEEECT-TSSEEEEEEEETTEEEEEEEETTSCCE---EECC-----CSSSEEEEEEECCCC
T ss_pred CCCCEE-EecCCC-CcCCeEEcC-CCCEEEEEEcCCCccEEEEEECCCCcE---EEee-----CCCCCCcCCcccccc
Confidence 988874 455664 899999999 999999888877 899999975433 3332 456889999999964
|
| >2d9e_A Peregrin; four-helix bundle, transcription activator, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.2e-24 Score=220.11 Aligned_cols=108 Identities=26% Similarity=0.328 Sum_probs=103.0
Q ss_pred chhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCccccCCCcCCHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhhcC
Q psy9598 115 PFNWKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQ 194 (1915)
Q Consensus 115 ~~~~~~~~~~il~~l~~~~~~~~F~~pvd~~~~pdY~~iIk~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~Lif~N~~~yN~ 194 (1915)
..+|...|..||+.|++++.++||++|||...+||||+||++||||+||++||+++.|.++++|.+||+|||.||++||+
T Consensus 5 ~~pl~~~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~ 84 (121)
T 2d9e_A 5 SSGFLILLRKTLEQLQEKDTGNIFSEPVPLSEVPDYLDHIKKPMDFFTMKQNLEAYRYLNFDDFEEDFNLIVSNCLKYNA 84 (121)
T ss_dssp CCHHHHHHHHHHHHHHHHCSSCSSSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSC
T ss_pred ccHHHHHHHHHHHHHHcCCccHhhCCcCCccccCCHHHHcCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9598 195 NKRSKIYIMTTRLSEFAEEHLRRLTVRWN 223 (1915)
Q Consensus 195 ~~~s~i~~~a~~l~~~f~~~~~~~~~~~~ 223 (1915)
++ |.+|.+|..|++.|++.|+++....+
T Consensus 85 ~~-s~~~~~A~~L~~~~~~~l~~~~~~~~ 112 (121)
T 2d9e_A 85 KD-TIFYRAAVRLREQGGAVLRQARRQAE 112 (121)
T ss_dssp TT-SHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CC-CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76 99999999999999999999877654
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.1e-22 Score=276.91 Aligned_cols=340 Identities=9% Similarity=0.012 Sum_probs=243.0
Q ss_pred CCcEEEEEEcCCCCEEEEEEC-CC-----cEEEEECCCCcEEEEEeCCCC------------------------CEEEEE
Q psy9598 476 LSAVFCVLFDKLGEVIVTGAD-DL-----LIKLWRARDGKLLATLRGCSG------------------------EISDIA 525 (1915)
Q Consensus 476 ~~~V~~vafspdg~~LaTGs~-Dg-----~I~IWd~~tg~~~~~l~gH~~------------------------~I~~La 525 (1915)
...|.+++|||||++|++++. |+ .|.+||+.+++....+.+|.. .|.+++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 467999999999999999998 88 899999999998877765543 388999
Q ss_pred EeCCCCEEEEEeCCCcEEEEECCCCc--eEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCcccccee
Q psy9598 526 IDNRNILLAAGTVDKTIRIWNLQTLA--PISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTV 603 (1915)
Q Consensus 526 fspdg~~LaSgs~DgtIrVWDl~tg~--~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~ 603 (1915)
|||||++|++++. +.|++||+.++. .+..+..|...+.+++|+|+ +++|++++ ++.|.+||+.++.......
T Consensus 116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPD----G~~la~~~-~~~i~~~d~~~g~~~~~~~ 189 (741)
T 2ecf_A 116 WSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPK----GGFVSFIR-GRNLWVIDLASGRQMQLTA 189 (741)
T ss_dssp ECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTT----SSEEEEEE-TTEEEEEETTTTEEEECCC
T ss_pred ECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCC----CCEEEEEe-CCcEEEEecCCCCEEEecc
Confidence 9999999999986 999999999883 44567778889999999994 58888887 4689999998765322111
Q ss_pred ccCcccccc----ccCCCCCceEEEEECCCCcEEEEEeCCC---------------------------------eEEEEE
Q psy9598 604 FHEPVMFNE----RIRPGNAHILCSSFSPGGLFLATGSGDH---------------------------------HVRVYK 646 (1915)
Q Consensus 604 ~~~~~~~~~----~~~~~~~~V~~l~fspdg~~Lasgs~Dg---------------------------------~I~IwD 646 (1915)
......... ........+.+++|||||++|++++.|+ .|.+||
T Consensus 190 ~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d 269 (741)
T 2ecf_A 190 DGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVIS 269 (741)
T ss_dssp CCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEEC
T ss_pred CCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEE
Confidence 110000000 0000011247799999999999987765 788888
Q ss_pred ecC-CCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeC-----CCcEEEEEccCCceEEeeecccccCCCCccccccccc
Q psy9598 647 MDG-VDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSR-----DGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNK 720 (1915)
Q Consensus 647 l~~-~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~-----DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 720 (1915)
+.+ .. ...+.....|...+.+++| |+|.+|++++. ++.|.+||+.++.+..+...... ..
T Consensus 270 ~~~~~~-~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~------------~~ 335 (741)
T 2ecf_A 270 PAEQAQ-TQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSP------------TW 335 (741)
T ss_dssp SSTTCC-CEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECS------------SC
T ss_pred CCCCCc-eEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCC------------Cc
Confidence 854 22 1111111257788999999 99999987764 57799999998876543321100 00
Q ss_pred cccEEEEEECCCCCEEEEEEecCCeEEEEECC-CCceEEEeeCCCCCeEEE-EEccCCCCEEE-EEecCc--eEEEEECC
Q psy9598 721 KIKVTMVAWDASDRWVITAINFNFQIKIWDAF-NGDLVQVLKGHTNEVFVL-ESHPFDSRVLL-SAGHDG--LIIIWDIL 795 (1915)
Q Consensus 721 ~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~-tg~~i~~l~gH~~~V~sl-~~sp~dg~~La-Sgs~DG--~I~IWdl~ 795 (1915)
...+..++|+|+|++++++.. +|.++||.+. ++. +..+..|...|..+ .|+| +++.|+ +++.++ .++||++.
T Consensus 336 ~~~~~~~~~spdg~~~~~~~~-~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~-dg~~l~~~~~~~~~~~~~l~~~~ 412 (741)
T 2ecf_A 336 VPLHNSLRFLDDGSILWSSER-TGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDE-KAGLAYFRAGIESARESQIYAVP 412 (741)
T ss_dssp CCCCSCCEECTTSCEEEEECT-TSSCEEEEECSSSC-EEESCCSSSCEEEEEEEET-TTTEEEEEECSSCTTCBEEEEEE
T ss_pred CCcCCceEECCCCeEEEEecC-CCccEEEEEcCCCC-eeeeeecceEEEeEeEEeC-CCCEEEEEEeCCCCceEEEEEEE
Confidence 013356899999997777665 8877777664 455 78888888889887 5999 777665 555555 89999986
Q ss_pred C-CccccceeeeeeecCCCCcceEEEEEcCCCCEEEEEeCC----CeEEEEeCCCC
Q psy9598 796 S-SKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSY----GHLLVYGLGGF 846 (1915)
Q Consensus 796 s-~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~d----G~I~Iwdl~s~ 846 (1915)
. +.. ...+. ....+.+++|||||++|++...+ +.+.+|++.++
T Consensus 413 ~~g~~--~~~l~------~~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~~ 460 (741)
T 2ecf_A 413 LQGGQ--PQRLS------KAPGMHSASFARNASVYVDSWSNNSTPPQIELFRANGE 460 (741)
T ss_dssp TTCCC--CEECC------CSCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETTSC
T ss_pred cCCCC--eeecc------cCCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcCCC
Confidence 4 433 33332 24567899999999999887554 46889987643
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1e-22 Score=242.70 Aligned_cols=272 Identities=12% Similarity=0.003 Sum_probs=190.2
Q ss_pred ccCCCeEEEeccc-CCceeeeEEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeC
Q psy9598 450 GPLSRSLMISSHK-YSNLRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDN 528 (1915)
Q Consensus 450 g~~d~~~~i~~~~-~~~~~~~~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafsp 528 (1915)
.+....+.+|... ...+...+++.+|..+|..|+|.||-.-|++..-. .-|...|.+|+|+|
T Consensus 59 ~~~~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-----------------~~~~~~v~sla~sp 121 (356)
T 2w18_A 59 TACEDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALG-----------------NLEIREIRALFCSS 121 (356)
T ss_dssp EEESSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEEC-----------------SSSEEEEEEECC--
T ss_pred EeccceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeec-----------------cccccceEEEEECC
Confidence 3445678888653 34568889999999999999999976544433211 22456799999999
Q ss_pred C----CCEEEEEeCCCcEEEEECCCCceEEE-eecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCcccccee
Q psy9598 529 R----NILLAAGTVDKTIRIWNLQTLAPISV-LVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTV 603 (1915)
Q Consensus 529 d----g~~LaSgs~DgtIrVWDl~tg~~~~~-l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~ 603 (1915)
+ ++++++++.+ +.||++.+++.+.+ ..+|...|..++|+|++ +.+. ...
T Consensus 122 d~~~~~~~l~s~g~~--~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG----~~~~--------------------s~~ 175 (356)
T 2w18_A 122 DDESEKQVLLKSGNI--KAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDG----GGKE--------------------NQF 175 (356)
T ss_dssp ----CCEEEEEEEEE--EEEEEETTTEEEEEESSSTTCEEEEEEECTTS----CEEE--------------------EEE
T ss_pred CccccccEEEeCCCe--EEEEecCCCcEEEecccCCCCcEEEEEECCCC----ceee--------------------eec
Confidence 9 9999998844 88897766555544 24455555555554421 2222 111
Q ss_pred ccCccccccccCCCCCceEEEEECC---CCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCC---CCeeEEEEcCCCCE
Q psy9598 604 FHEPVMFNERIRPGNAHILCSSFSP---GGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHS---DKVDSIQWSHSHLR 677 (1915)
Q Consensus 604 ~~~~~~~~~~~~~~~~~V~~l~fsp---dg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~---~~V~sl~fspdg~~ 677 (1915)
.|...+..++|++ ++.+|++|+.|++|+|||+ .+...+.++.+|. ..|.+++|+|+|.+
T Consensus 176 ------------~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl---~TGk~l~tL~g~~~~v~~v~~vafSpdG~~ 240 (356)
T 2w18_A 176 ------------LMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNL---KTGQLLKKMHIDDSYQASVCHKAYSEMGLL 240 (356)
T ss_dssp ------------ECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEET---TTCCEEEEEECCC---CCCEEEEEEETTEE
T ss_pred ------------cCCCceeeEEeeccCCCCceEEEecCCCcEEEEEC---CCCcEEEEEcCCCcceeeeEEEEECCCCCE
Confidence 2345567778888 7799999999999999999 4456677777654 36778899999987
Q ss_pred E------------EEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCe
Q psy9598 678 F------------VSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQ 745 (1915)
Q Consensus 678 L------------~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~ 745 (1915)
+ ++|+.|++|++||..++..+....-. . ..+|...+.+..++ +.++++++. |++
T Consensus 241 lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~---~--------p~Gh~~~~lsg~~s--g~~lASgS~-DgT 306 (356)
T 2w18_A 241 FIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYC---L--------PPGQAGRFLEGDVK--DHCAAAILT-SGT 306 (356)
T ss_dssp EEEEC------------CCEEEEEEETTTTEEEEEEEEC---C--------CTTCCCCEEEEEEE--TTEEEEEET-TSC
T ss_pred EEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEee---c--------cCCCcceeEccccC--CCEEEEEcC-CCc
Confidence 6 56889999999999988765422100 0 11233334444444 778888877 999
Q ss_pred EEEEECCCCceEEEeeCCCCCeE-EEEEccCCCCEEEEEecCceEEEEEC
Q psy9598 746 IKIWDAFNGDLVQVLKGHTNEVF-VLESHPFDSRVLLSAGHDGLIIIWDI 794 (1915)
Q Consensus 746 I~vwD~~tg~~i~~l~gH~~~V~-sl~~sp~dg~~LaSgs~DG~I~IWdl 794 (1915)
|+|||+.+++++.+|.+|...+. +++|+| ++.+|+||+.|++|+|||+
T Consensus 307 IkIWDl~tGk~l~tL~gH~~~vvs~vafSP-DG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 307 IAIWDLLLGQCTALLPPVSDQHWSFVKWSG-TDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EEEEETTTCSEEEEECCC--CCCCEEEECS-SSSEEEEECTTSCEEEEEE
T ss_pred EEEEECCCCcEEEEecCCCCCeEEEEEECC-CCCEEEEEECCCcEEEecC
Confidence 99999999999999999987665 589999 9999999999999999996
|
| >2i7k_A Bromodomain-containing protein 7; helix, LEFT-handed four-helix bundle, transcription; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.7e-24 Score=217.61 Aligned_cols=105 Identities=21% Similarity=0.338 Sum_probs=100.6
Q ss_pred chhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCccccCCCcCCHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhhcC
Q psy9598 115 PFNWKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQ 194 (1915)
Q Consensus 115 ~~~~~~~~~~il~~l~~~~~~~~F~~pvd~~~~pdY~~iIk~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~Lif~N~~~yN~ 194 (1915)
..++...|..||+.|++++.+++|..|||...+||||+||++||||+||++||++|.|.++++|.+||+|||.||++||+
T Consensus 6 ~~~l~~~l~~il~~L~~~~~~~~F~~PVd~~~~pdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~Na~~yN~ 85 (117)
T 2i7k_A 6 QTPLQEALNQLMRQLQRKDPSAFFSFPVTDFIAPGYSMIIKHPMDFSTMKEKIKNNDYQSIEELKDNFKLMCTNAMIYNK 85 (117)
T ss_dssp HHHHHHHHHHHHHHHHTSSGGGTSSSCCCTTTSSSHHHHCSCCCCHHHHHHHHTTTSCCSHHHHHHHHHHHHHHHHHTSC
T ss_pred hHHHHHHHHHHHHHHHhCcccHHhcCCCCccccCCHHHHhCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy9598 195 NKRSKIYIMTTRLSEFAEEHLRRLTV 220 (1915)
Q Consensus 195 ~~~s~i~~~a~~l~~~f~~~~~~~~~ 220 (1915)
++ |.+|.+|..|++.|+++++....
T Consensus 86 ~~-s~i~~~A~~L~~~f~~~~~~~~~ 110 (117)
T 2i7k_A 86 PE-TIYYKAAKKLLHSGMKILSQERL 110 (117)
T ss_dssp SS-SSHHHHHHHHHHHHHHHHHHHTC
T ss_pred CC-CHHHHHHHHHHHHHHHHHHHHHH
Confidence 77 99999999999999999988654
|
| >1e6i_A Transcriptional activator GCN5; gene regulation, bromodomain, histone binding, N-acetyl lysine; HET: ALY; 1.87A {Saccharomyces cerevisiae} SCOP: a.29.2.1 | Back alignment and structure |
|---|
Probab=99.90 E-value=1.8e-24 Score=220.96 Aligned_cols=102 Identities=29% Similarity=0.547 Sum_probs=98.0
Q ss_pred hHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCccccCCCcCCHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhhcCCC
Q psy9598 117 NWKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQNK 196 (1915)
Q Consensus 117 ~~~~~~~~il~~l~~~~~~~~F~~pvd~~~~pdY~~iIk~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~Lif~N~~~yN~~~ 196 (1915)
++...|..||+.|++++.++||.+|||...+||||+||++||||+||++||++|.|.++++|.+||+|||.||++||+++
T Consensus 13 ~~~~~~~~il~~l~~~~~a~~F~~pvd~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~ 92 (121)
T 1e6i_A 13 PHDAAIQNILTELQNHAAAWPFLQPVNKEEVPDYYDFIKEPMDLSTMEIKLESNKYQKMEDFIYDARLVFNNCRMYNGEN 92 (121)
T ss_dssp TTHHHHHHHHHHHHHSTTCGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHHcCCCchhhCCCCChhhCcCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999977
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHH
Q psy9598 197 RSKIYIMTTRLSEFAEEHLRRLT 219 (1915)
Q Consensus 197 ~s~i~~~a~~l~~~f~~~~~~~~ 219 (1915)
|.+|.+|..|+++|+++++.+.
T Consensus 93 -s~i~~~A~~L~~~f~~~~~~~p 114 (121)
T 1e6i_A 93 -TSYYKYANRLEKFFNNKVKEIP 114 (121)
T ss_dssp -SHHHHHHHHHHHHHHHHHHTSG
T ss_pred -CHHHHHHHHHHHHHHHHHHHcc
Confidence 9999999999999999999873
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.4e-22 Score=264.54 Aligned_cols=321 Identities=15% Similarity=0.108 Sum_probs=242.9
Q ss_pred EeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEec--ccCcccccee
Q psy9598 526 IDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKY--KLDIDISKTV 603 (1915)
Q Consensus 526 fspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl--~~~~~~~~~~ 603 (1915)
|+|++.++++++.|++|.+||..+++++.++..+.. +.+++|+| ++++|++++.|++|.+||+ .++..+..+.
T Consensus 145 ~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~sp----dg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~ 219 (543)
T 1nir_A 145 LDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSA----SGRYLLVIGRDARIDMIDLWAKEPTKVAEIK 219 (543)
T ss_dssp CCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECT----TSCEEEEEETTSEEEEEETTSSSCEEEEEEE
T ss_pred cCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECC----CCCEEEEECCCCeEEEEECcCCCCcEEEEEe
Confidence 788999999999999999999999999999984333 88999999 4599999999999999999 6654333222
Q ss_pred ccCccccccccCCCCCceEEEEECC----CCcEEEEEeC-CCeEEEEEecCCCCCceeEEecc----------CCC-Cee
Q psy9598 604 FHEPVMFNERIRPGNAHILCSSFSP----GGLFLATGSG-DHHVRVYKMDGVDSPLGILEVEE----------HSD-KVD 667 (1915)
Q Consensus 604 ~~~~~~~~~~~~~~~~~V~~l~fsp----dg~~Lasgs~-Dg~I~IwDl~~~~~~~~i~~l~~----------h~~-~V~ 667 (1915)
+...+..++|+| +|++|++++. +++|.|||..+ ...+..+.. |.. .+.
T Consensus 220 -------------~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t---~~~~~~i~~~g~~~~~~~~~~~~~v~ 283 (543)
T 1nir_A 220 -------------IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGET---LEPKQIVSTRGMTVDTQTYHPEPRVA 283 (543)
T ss_dssp -------------CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTT---CCEEEEEECCEECSSSCCEESCCCEE
T ss_pred -------------cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccc---cccceeecccCcccCccccccCCceE
Confidence 125678999999 9999998884 89999999843 334444432 223 789
Q ss_pred EEEEcCCCCE-EEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeE
Q psy9598 668 SIQWSHSHLR-FVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQI 746 (1915)
Q Consensus 668 sl~fspdg~~-L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I 746 (1915)
++.+++++.. ++++..+|.|.+||+.+....... ...+...+..++|+|+|++|++++..+++|
T Consensus 284 ~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~---------------~i~~~~~~~~~~~spdg~~l~va~~~~~~v 348 (543)
T 1nir_A 284 AIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVT---------------SIGAAPFLHDGGWDSSHRYFMTAANNSNKV 348 (543)
T ss_dssp EEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEE---------------EEECCSSCCCEEECTTSCEEEEEEGGGTEE
T ss_pred EEEECCCCCEEEEEECCCCeEEEEEecCCCcceeE---------------EeccCcCccCceECCCCCEEEEEecCCCeE
Confidence 9999997764 566778899999999876532210 001233456789999999998887668999
Q ss_pred EEEECCCCceEEEeeC----CCCCeEEEEEccCCCCEEEEEe-cCceEEEEECCC-------CccccceeeeeeecCCCC
Q psy9598 747 KIWDAFNGDLVQVLKG----HTNEVFVLESHPFDSRVLLSAG-HDGLIIIWDILS-------SKQRGYKWFHNIVEGQGE 814 (1915)
Q Consensus 747 ~vwD~~tg~~i~~l~g----H~~~V~sl~~sp~dg~~LaSgs-~DG~I~IWdl~s-------~~~~~~~~~~~~~~~~~~ 814 (1915)
.+||+.+++++..+.. |.+....+ ++|..+.+++|++ .|++|.|||+.+ .++ +..+. .+.
T Consensus 349 ~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~--v~~l~-----~~g 420 (543)
T 1nir_A 349 AVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKK--VAELQ-----GQG 420 (543)
T ss_dssp EEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSE--EEEEE-----CSC
T ss_pred EEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeE--EEEEE-----cCC
Confidence 9999999999998874 65544443 5773477777776 689999999988 444 55544 233
Q ss_pred cceEEEEEcCCCCEEEEEe-------CCCeEEEEeCCCCccc-ccC--------------CCceeecCCCCeeeec----
Q psy9598 815 GALFDGKWSPDGTTCALTD-------SYGHLLVYGLGGFKRP-QNI--------------PRELFFHTDYRTLNRP---- 868 (1915)
Q Consensus 815 ~~V~~vafSpdg~~Lasg~-------~dG~I~Iwdl~s~~~~-~~l--------------~~~~~F~~d~~~Lv~~---- 868 (1915)
+.+..++|+|+|++|++++ .+++|.|||+.+++.. ..+ +.++.|++|++.+...
T Consensus 421 ~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~ 500 (543)
T 1nir_A 421 GGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNG 500 (543)
T ss_dssp SCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECC
T ss_pred CCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecC
Confidence 5678899999999999987 3679999999998876 333 1278899999988743
Q ss_pred --CCCccceeecccCCCCCcCCCC
Q psy9598 869 --NGLFEPTYDEVTNLPPHLMPPP 890 (1915)
Q Consensus 869 --~~~~~~v~D~~t~~~p~~~~~p 890 (1915)
..+-+.|||..|.......+++
T Consensus 501 ~~~~~~i~v~D~~t~~~~~~i~~~ 524 (543)
T 1nir_A 501 KNDSSALVVVDDKTLKLKAVVKDP 524 (543)
T ss_dssp TTSCCEEEEEETTTTEEEEEECCT
T ss_pred CCCCCeEEEEECCCceEEEeecCC
Confidence 1355779999998666555444
|
| >4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor, histone, epigenetic reader; HET: 1GH; 1.60A {Homo sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A* 4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A* 2ydw_A* 2yw5_A | Back alignment and structure |
|---|
Probab=99.90 E-value=2e-24 Score=229.58 Aligned_cols=108 Identities=28% Similarity=0.517 Sum_probs=101.2
Q ss_pred CCchhHHHHHHHHHHHHhcCCCCCCCCCCCCCC--CCCCccccCCCcCCHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHh
Q psy9598 113 KRPFNWKNECREVLETLWVCPDSEPFRKPVDKL--DHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSR 190 (1915)
Q Consensus 113 ~~~~~~~~~~~~il~~l~~~~~~~~F~~pvd~~--~~pdY~~iIk~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~Lif~N~~ 190 (1915)
+....++..|..||+.|++++.++||++|||.. ++||||+||++||||+||++||+++.|.++++|..||+|||.||+
T Consensus 28 r~t~~l~~~~~~il~~l~~~~~a~~F~~PVd~~~~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~Na~ 107 (154)
T 4alg_A 28 RVTNQLQYLHKVVMKALWKHQFAWPFRQPVDAVKLGLPDYHKIIKQPMDMGTIKRRLENNYYWAASECMQDFNTMFTNCY 107 (154)
T ss_dssp CCBHHHHHHHHTHHHHHHTSTTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHhCcCchhhcCCCChhhccCCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 445678888999999999999999999999955 899999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q psy9598 191 NYNQNKRSKIYIMTTRLSEFAEEHLRRLTVR 221 (1915)
Q Consensus 191 ~yN~~~~s~i~~~a~~l~~~f~~~~~~~~~~ 221 (1915)
+||+++ +.||.+|..|+++|+++|+.+...
T Consensus 108 ~YN~~~-s~i~~~A~~L~~~f~~~~~~l~~~ 137 (154)
T 4alg_A 108 IYNKPT-DDIVLMAQTLEKIFLQKVASMPQE 137 (154)
T ss_dssp HHSCTT-SHHHHHHHHHHHHHHHHHTTSCSS
T ss_pred HHCCCC-CHHHHHHHHHHHHHHHHHHHCCch
Confidence 999976 999999999999999999987544
|
| >3q2e_A Bromodomain and WD repeat-containing protein 1; structural genomics consortium, SGC, cell cycle progression, signal transduction, apoptosis; 1.74A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=3.2e-24 Score=220.22 Aligned_cols=114 Identities=45% Similarity=0.903 Sum_probs=104.1
Q ss_pred CchhhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCccccccCccchhhHHhhhcCCCCCCHHHHHHHHHHHHHHhhhhc
Q psy9598 1529 RPFNWKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYN 1608 (1915)
Q Consensus 1529 ~~~~~~~~~~~ll~~l~~~~~s~~F~~pv~~~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~Dv~lif~Na~~yN 1608 (1915)
....|+++|..||+.|++++.++||+.||+..++||||++|++||||+||++||.+|.|.++++|..||+|||.||+.||
T Consensus 7 ~~~~~~~~c~~il~~l~~~~~s~~F~~pv~~~~~pdY~~~I~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN 86 (123)
T 3q2e_A 7 VESNWKKQCKELVNLIFQCEDSEPFRQPVDLVEYPDYRDIIDTPMDFGTVRETLDAGNYDSPLEFCKDIRLIFSNAKAYT 86 (123)
T ss_dssp ---CHHHHHHHHHHHHHTSGGGGGGSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHHHhCCCcHhhcCCCChhhcCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 55789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy9598 1609 QNKRSKIYIMTTRLSEFAEEHLRRLTVRWNSHKN 1642 (1915)
Q Consensus 1609 ~~~~s~i~~~a~~l~~~f~~~~~~~~~~~~~~~~ 1642 (1915)
++++|.||.+|..|+++|+++++++...++...+
T Consensus 87 ~~~~s~i~~~A~~L~~~f~~~~~~~~~~~~~~~~ 120 (123)
T 3q2e_A 87 PNKRSKIYSMTLRLSALFEEKMKKISSDFKIGQK 120 (123)
T ss_dssp CCTTSHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8734999999999999999999999998875543
|
| >3nxb_A CAT eye syndrome critical region protein 2; structural genomics consortium, SGC, CECR2, CAT eye syndrome chromosome region candidate 2, bromodomain; 1.83A {Homo sapiens} SCOP: a.29.2.0 | Back alignment and structure |
|---|
Probab=99.90 E-value=2.6e-24 Score=218.95 Aligned_cols=102 Identities=30% Similarity=0.474 Sum_probs=97.5
Q ss_pred chhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCccccCCCcCCHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhhcC
Q psy9598 115 PFNWKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQ 194 (1915)
Q Consensus 115 ~~~~~~~~~~il~~l~~~~~~~~F~~pvd~~~~pdY~~iIk~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~Lif~N~~~yN~ 194 (1915)
..++.+.|..||+.|++++.++||.+|||...+||||+||++||||+||++||+++.|.++++|..||+|||.||++||+
T Consensus 14 ~~~~~~~~~~il~~l~~~~~s~~F~~pv~~~~~pdY~~~I~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~ 93 (116)
T 3nxb_A 14 LDDDFTAMYKVLDVVKAHKDSWPFLEPVDESYAPNYYQIIKAPMDISSMEKKLNGGLYCTKEEFVNDMKTMFRNCRKYNG 93 (116)
T ss_dssp -CCHHHHHHHHHHHHHHSTTCGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHhCCCcHhhcCcCChhhccChHHHcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 34688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Q psy9598 195 NKRSKIYIMTTRLSEFAEEHLRR 217 (1915)
Q Consensus 195 ~~~s~i~~~a~~l~~~f~~~~~~ 217 (1915)
++ |.||.+|..|+++|++.|.+
T Consensus 94 ~~-s~~~~~A~~L~~~f~~~~~k 115 (116)
T 3nxb_A 94 ES-SEYTKMSDNLERCFHRAMMK 115 (116)
T ss_dssp TT-CHHHHHHHHHHHHHHHHHHC
T ss_pred CC-CHHHHHHHHHHHHHHHHHhh
Confidence 77 99999999999999999864
|
| >2dat_A Possible global transcription activator SNF2L2; bromodomain, all alpha protein, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.1e-24 Score=221.42 Aligned_cols=105 Identities=24% Similarity=0.368 Sum_probs=99.5
Q ss_pred CchhHHHHHHHHHHHHhcCC------CCCCCCCCCCCCCCCCccccCCCcCCHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Q psy9598 114 RPFNWKNECREVLETLWVCP------DSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFH 187 (1915)
Q Consensus 114 ~~~~~~~~~~~il~~l~~~~------~~~~F~~pvd~~~~pdY~~iIk~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~Lif~ 187 (1915)
.+..+.+.|..||+.|++++ .++||++||+..++||||+||++||||+||++||+++.|.++++|.+||+|||.
T Consensus 10 ~~~~l~~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~ 89 (123)
T 2dat_A 10 NPPKLTKQMNAIIDTVINYKDSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLGDLEKDVMLLCH 89 (123)
T ss_dssp CCHHHHHHHHHHHHHHHHCBCSSSCBSGGGGTSCCCTTTSCHHHHHCSSCCCHHHHHHHHTTTCCCSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhhcccCCeeeHHhcCCCCcccCCCHHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence 45789999999999999986 489999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy9598 188 NSRNYNQNKRSKIYIMTTRLSEFAEEHLRRLT 219 (1915)
Q Consensus 188 N~~~yN~~~~s~i~~~a~~l~~~f~~~~~~~~ 219 (1915)
||++||+++ |.||.+|..|+++|+++++++.
T Consensus 90 Na~~yN~~~-s~i~~~A~~L~~~f~~~~~~~p 120 (123)
T 2dat_A 90 NAQTFNLEG-SQIYEDSIVLQSVFKSARQSGP 120 (123)
T ss_dssp HHHHHSCTT-SHHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHCCCC-CHHHHHHHHHHHHHHHHHHHcC
Confidence 999999977 9999999999999999998764
|
| >2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.35A {Homo sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A* 3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A* 3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A* 2nxb_A ... | Back alignment and structure |
|---|
Probab=99.90 E-value=3.7e-24 Score=220.34 Aligned_cols=105 Identities=32% Similarity=0.573 Sum_probs=99.0
Q ss_pred CCchhHHHHHHHHHHHHhcCCCCCCCCCCCCC--CCCCCccccCCCcCCHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHh
Q psy9598 113 KRPFNWKNECREVLETLWVCPDSEPFRKPVDK--LDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSR 190 (1915)
Q Consensus 113 ~~~~~~~~~~~~il~~l~~~~~~~~F~~pvd~--~~~pdY~~iIk~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~Lif~N~~ 190 (1915)
+....++..|..||+.|++++.++||.+|||. .++||||+||++||||+||++||++|.|.++++|.+||+|||.||+
T Consensus 17 r~~~~l~~~~~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~ 96 (127)
T 2oss_A 17 RQTNQLQYLLRVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWNAQECIQDFNTMFTNCY 96 (127)
T ss_dssp CCCHHHHHHHHTHHHHHHTSTTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHhCccchhhcCCCChhhccCccHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 34567888899999999999999999999994 5899999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy9598 191 NYNQNKRSKIYIMTTRLSEFAEEHLRRL 218 (1915)
Q Consensus 191 ~yN~~~~s~i~~~a~~l~~~f~~~~~~~ 218 (1915)
+||+++ |.||.+|..|+++|+++|+++
T Consensus 97 ~yN~~~-s~i~~~A~~L~~~f~~~~~~l 123 (127)
T 2oss_A 97 IYNKPG-DDIVLMAEALEKLFLQKINEL 123 (127)
T ss_dssp HHSCTT-CHHHHHHHHHHHHHHHHHTTC
T ss_pred HHCCCC-CHHHHHHHHHHHHHHHHHHHC
Confidence 999977 999999999999999999876
|
| >3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP, crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST, bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens} SCOP: a.29.2.1 PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A* 1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A | Back alignment and structure |
|---|
Probab=99.90 E-value=5.9e-24 Score=217.31 Aligned_cols=109 Identities=35% Similarity=0.610 Sum_probs=102.1
Q ss_pred cCCchhHHHHHHHHHHHHhc-CCCCCCCCCCCCCC--CCCCccccCCCcCCHHHHHHHhcCCCCCCHHHHHHHHHHHHHH
Q psy9598 112 LKRPFNWKNECREVLETLWV-CPDSEPFRKPVDKL--DHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHN 188 (1915)
Q Consensus 112 ~~~~~~~~~~~~~il~~l~~-~~~~~~F~~pvd~~--~~pdY~~iIk~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~Lif~N 188 (1915)
...+.++++.|..+|..|++ ++.++||.+|||.. ++||||+||++||||+||++||+++.|.++++|..||+|||.|
T Consensus 6 ~~~~~el~~~l~~~l~~l~~~~~~s~~F~~pv~~~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~N 85 (119)
T 3p1f_A 6 IFKPEELRQALMPTLEALYRQDPESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQEPWQYVDDVWLMFNN 85 (119)
T ss_dssp CCCHHHHHHHHHHHHHHHHTCTTTTGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHhCCCCchhcCCCCchhccCCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 34567899999999999988 78999999999965 8999999999999999999999999999999999999999999
Q ss_pred HhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q psy9598 189 SRNYNQNKRSKIYIMTTRLSEFAEEHLRRLTVR 221 (1915)
Q Consensus 189 ~~~yN~~~~s~i~~~a~~l~~~f~~~~~~~~~~ 221 (1915)
|++||+++ |.||.+|..|+++|++.++.+...
T Consensus 86 a~~yN~~~-s~i~~~A~~L~~~f~~~~~~~~~~ 117 (119)
T 3p1f_A 86 AWLYNRKT-SRVYKFCSKLAEVFEQEIDPVMQS 117 (119)
T ss_dssp HHHHSCTT-SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCC-CHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999976 999999999999999999998765
|
| >3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain interacting protein, DCAF14 DDB1 and CUL4 associated factor 14, SGC; 2.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=5.3e-24 Score=222.59 Aligned_cols=116 Identities=46% Similarity=0.838 Sum_probs=108.6
Q ss_pred cCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCccccccCccchhhHHhhhcCCCCCCHHHHHHHHHHHHHHhhh
Q psy9598 1527 LKRPFNWKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRN 1606 (1915)
Q Consensus 1527 ~~~~~~~~~~~~~ll~~l~~~~~s~~F~~pv~~~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~Dv~lif~Na~~ 1606 (1915)
......|++.|..||+.|+.++.++||+.||+..++||||++|++||||+||++||.+|.|.++++|..||+|||.||+.
T Consensus 16 ~~~~~~l~~~~~~il~~l~~~~~s~~F~~pv~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~ 95 (135)
T 3mb3_A 16 SYDIQAWKKQCEELLNLIFQCEDSEPFRQPVDLLEYPDYRDIIDTPMDFATVRETLEAGNYESPMELCKDVRLIFSNSKA 95 (135)
T ss_dssp -CCSSTHHHHHHHHHHHHHHSGGGGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHHhCCCChhhcCCCChhhCCCHHHHhCCCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHH
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy9598 1607 YNQNKRSKIYIMTTRLSEFAEEHLRRLTVRWNSHKN 1642 (1915)
Q Consensus 1607 yN~~~~s~i~~~a~~l~~~f~~~~~~~~~~~~~~~~ 1642 (1915)
||++++|.||.+|..|+++|+++|..+...++...+
T Consensus 96 yN~~~~s~i~~~A~~L~~~f~~~~~~~~~~~~~~~r 131 (135)
T 3mb3_A 96 YTPSKRSRIYSMSLRLSAFFEEHISSVLSDYKSALR 131 (135)
T ss_dssp HSCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999733999999999999999999999998875544
|
| >3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 1.66A {Homo sapiens} PDB: 3g0j_A 2yqd_A | Back alignment and structure |
|---|
Probab=99.90 E-value=3.6e-24 Score=220.21 Aligned_cols=108 Identities=27% Similarity=0.322 Sum_probs=100.4
Q ss_pred ccCCchhHHHHHHHHHHHHhc------CCCCCCCCCCCCCCCCCCccccCCCcCCHHHHHHHhcCCCCCCHHHHHHHHHH
Q psy9598 111 KLKRPFNWKNECREVLETLWV------CPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKR 184 (1915)
Q Consensus 111 ~~~~~~~~~~~~~~il~~l~~------~~~~~~F~~pvd~~~~pdY~~iIk~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~L 184 (1915)
+.+...+|++.|..||+.|++ ++.++||.+||+..++||||+||++||||+||++||+++.|.++++|..||+|
T Consensus 9 ~~k~~~~l~~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~l 88 (124)
T 3mb4_A 9 KSKYMTPMQQKLNEVYEAVKNYTDKRGRRLSAIFLRLPSRSELPDYYLTIKKPMDMEKIRSHMMANKYQDIDSMVEDFVM 88 (124)
T ss_dssp -CCCCCHHHHHHHHHHHHHHHCBCTTSCBGGGGGSCCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHH
T ss_pred ccccChHHHHHHHHHHHHHHhHhcccCCcccHHhhcCCCccccCCHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 344567899999999999998 44579999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy9598 185 VFHNSRNYNQNKRSKIYIMTTRLSEFAEEHLRRLT 219 (1915)
Q Consensus 185 if~N~~~yN~~~~s~i~~~a~~l~~~f~~~~~~~~ 219 (1915)
||.||++||+++ |.||.+|..|+++|++.|+++.
T Consensus 89 i~~Na~~yN~~~-s~i~~~A~~L~~~f~~~~~~l~ 122 (124)
T 3mb4_A 89 MFNNACTYNEPE-SLIYKDALVLHKVLLETRRDLE 122 (124)
T ss_dssp HHHHHHHHSCTT-SHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999977 9999999999999999999874
|
| >2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1, chromatin remodelling, acely-lysine binding, protein-protein interactions; 1.50A {Homo sapiens} PDB: 3uvd_A 2h60_A | Back alignment and structure |
|---|
Probab=99.90 E-value=6.1e-24 Score=219.61 Aligned_cols=110 Identities=22% Similarity=0.350 Sum_probs=103.1
Q ss_pred CCchhHHHHHHHHHHHHhcCC-------CCCCCCCCCCCCCCCCccccCCCcCCHHHHHHHhcCCCCCCHHHHHHHHHHH
Q psy9598 113 KRPFNWKNECREVLETLWVCP-------DSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRV 185 (1915)
Q Consensus 113 ~~~~~~~~~~~~il~~l~~~~-------~~~~F~~pvd~~~~pdY~~iIk~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~Li 185 (1915)
..+..|.+.|..||+.|++++ .++||++||+...+||||+||++||||+||++||.++.|.++++|.+||+||
T Consensus 7 ~~~~~l~~~~~~il~~l~~~~d~~~~~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~Li 86 (129)
T 2grc_A 7 PNPPNLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLL 86 (129)
T ss_dssp CCCHHHHHHHHHHHHHHHHCBCTTTCCBGGGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHhcccccccCeeeHHhcCCCCcccCCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 456789999999999999876 4799999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9598 186 FHNSRNYNQNKRSKIYIMTTRLSEFAEEHLRRLTVRWN 223 (1915)
Q Consensus 186 f~N~~~yN~~~~s~i~~~a~~l~~~f~~~~~~~~~~~~ 223 (1915)
|.||++||+++ |.||.+|..|+++|+++|+++...-.
T Consensus 87 ~~Na~~yN~~~-s~i~~~A~~L~~~f~~~~~~l~~~~~ 123 (129)
T 2grc_A 87 CQNAQTFNLEG-SLIYEDSIVLQSVFTSVRQKIEKEDD 123 (129)
T ss_dssp HHHHHHHSCTT-SHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCC-CHHHHHHHHHHHHHHHHHHHccCCCc
Confidence 99999999977 99999999999999999999876543
|
| >2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.89A {Homo sapiens} PDB: 2yem_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=4.6e-24 Score=220.61 Aligned_cols=107 Identities=27% Similarity=0.492 Sum_probs=97.6
Q ss_pred cCCchhHHHHHHHHHHHHhcCCC---CCCCCCCCCC--CCCCCccccCCCcCCHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q psy9598 112 LKRPFNWKNECREVLETLWVCPD---SEPFRKPVDK--LDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVF 186 (1915)
Q Consensus 112 ~~~~~~~~~~~~~il~~l~~~~~---~~~F~~pvd~--~~~pdY~~iIk~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~Lif 186 (1915)
.++..+..+.|..||+.|+++++ +|||++|||. .++||||+||++||||+||++||+++.|.++++|.+||+|||
T Consensus 17 ~~~~~~~l~~c~~il~~L~~~~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~li~ 96 (130)
T 2ouo_A 17 SSKVSEQLKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLEAREYRDAQEFGADVRLMF 96 (130)
T ss_dssp --CHHHHHHHHHHHHHHHTSGGGHHHHGGGSSCCCTTSTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHHhCCcchhHHHhcCCCChhhccCCcHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 34455677899999999999875 8999999995 469999999999999999999999999999999999999999
Q ss_pred HHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy9598 187 HNSRNYNQNKRSKIYIMTTRLSEFAEEHLRRLT 219 (1915)
Q Consensus 187 ~N~~~yN~~~~s~i~~~a~~l~~~f~~~~~~~~ 219 (1915)
.||++||+++ |.||.+|..|+++|+++|+.+.
T Consensus 97 ~Na~~yN~~~-s~i~~~A~~L~~~f~~~~~~lp 128 (130)
T 2ouo_A 97 SNCYKYNPPD-HEVVAMARKLQDVFEMRFAKMP 128 (130)
T ss_dssp HHHHHHSCTT-SHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHCC
Confidence 9999999977 9999999999999999998764
|
| >2yyn_A Transcription intermediary factor 1-alpha; bromo domain, structural genomics, NPPSFA; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=9e-24 Score=219.90 Aligned_cols=108 Identities=32% Similarity=0.496 Sum_probs=101.2
Q ss_pred CchhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCccccCCCcCCHHHHHHHhcC--CCCCCHHHHHHHHHHHHHHHhh
Q psy9598 114 RPFNWKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRG--DNYESPIDFVKDVKRVFHNSRN 191 (1915)
Q Consensus 114 ~~~~~~~~~~~il~~l~~~~~~~~F~~pvd~~~~pdY~~iIk~Pmdl~ti~~kl~~--~~Y~~~~~f~~D~~Lif~N~~~ 191 (1915)
..+..++.|..||..|++|+.++||++||+. .+||||+||++||||+||++||++ +.|.++++|.+||+|||.||++
T Consensus 17 m~p~~~~~c~~il~~L~~~~~s~~F~~Pv~~-~~pdY~~iIk~PmDL~tI~~kL~~~~~~Y~s~~ef~~Dv~Lif~Na~~ 95 (135)
T 2yyn_A 17 LTPIDKRKCERLLLFLYCHEMSLAFQDPVPL-TVPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIFQNCAE 95 (135)
T ss_dssp CCHHHHHHHHHHHHHHHTSGGGGGGSSCCCT-TSTTHHHHCSSCCCHHHHHHHHHSSSCCCSSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhCccchhhcCCCcc-cCCCHHHHcCCCCCHHHHHHHHhccccCCCCHHHHHHHHHHHHHHHHH
Confidence 4456778999999999999999999999998 799999999999999999999998 5899999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9598 192 YNQNKRSKIYIMTTRLSEFAEEHLRRLTVRWN 223 (1915)
Q Consensus 192 yN~~~~s~i~~~a~~l~~~f~~~~~~~~~~~~ 223 (1915)
||+++ |.||.+|..|+++|+++|+++...+.
T Consensus 96 yN~~~-s~i~~~A~~L~~~f~~~~~~~~~~~~ 126 (135)
T 2yyn_A 96 FNEPD-SEVANAGIKLENYFEELLKNLYPEKR 126 (135)
T ss_dssp HSCTT-SHHHHHHHHHHHHHHHHHHHHSSSCC
T ss_pred HCCCC-CHHHHHHHHHHHHHHHHHHHhccccC
Confidence 99977 99999999999999999999977654
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.1e-21 Score=277.11 Aligned_cols=369 Identities=11% Similarity=-0.024 Sum_probs=275.7
Q ss_pred eEEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCC-CcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEEC
Q psy9598 469 HYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARD-GKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNL 547 (1915)
Q Consensus 469 ~~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~t-g~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl 547 (1915)
...+.+|...|.+++|+++ .++++++.||.+.||.+.. +.....+.+|. .+.+++|+|+|++|++++ ++.|.+|++
T Consensus 196 ~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~~-~~~i~~~d~ 272 (1045)
T 1k32_A 196 FKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFSK-GGSIYIFNP 272 (1045)
T ss_dssp EEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEEEE-TTEEEEECT
T ss_pred eEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEEEe-CCEEEEecC
Confidence 3456899999999999988 6777888899999998653 44455666665 467789999999998885 899999999
Q ss_pred CCCceEEEeec-----------CCCCeEEEEec-cCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccC
Q psy9598 548 QTLAPISVLVG-----------HQGIITGVNFC-PLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIR 615 (1915)
Q Consensus 548 ~tg~~~~~l~~-----------h~~~V~sl~fs-p~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~ 615 (1915)
... .+..+.+ |...|.+++|+ |+ +.+|++++ ++.|.+|++.++.... +.
T Consensus 273 ~~~-~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pd----G~~la~~~-~~~i~~~~~~~~~~~~-------------~~ 333 (1045)
T 1k32_A 273 DTE-KIEKIEIGDLESPEDRIISIPSKFAEDFSPLD----GDLIAFVS-RGQAFIQDVSGTYVLK-------------VP 333 (1045)
T ss_dssp TTC-CEEECCCCCCCBCCSEEEECGGGGEEEEEECG----GGCEEEEE-TTEEEEECTTSSBEEE-------------CS
T ss_pred Cce-EeeeeccCcccccccccccccccceeeecCCC----CCEEEEEE-cCEEEEEcCCCCceEE-------------cc
Confidence 544 4445554 34579999999 95 47888887 8899999987664211 12
Q ss_pred CCCC-ceEEEEECCCCcEEEEEeCCCeEE-EEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEcc
Q psy9598 616 PGNA-HILCSSFSPGGLFLATGSGDHHVR-VYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYK 693 (1915)
Q Consensus 616 ~~~~-~V~~l~fspdg~~Lasgs~Dg~I~-IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~ 693 (1915)
.+.. .+.+++|+ +|..|++++.++.|. +|++.+. ....+.+|...+.+++|+|+|.+|++++.++.|++||+.
T Consensus 334 ~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~----~~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~ 408 (1045)
T 1k32_A 334 EPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTG----KAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLE 408 (1045)
T ss_dssp CCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTC----CEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred CCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCC----CceEecCCccceeeeEECCCCCEEEEECCCCeEEEEECC
Confidence 3344 78999999 999999999888888 8888432 123344788899999999999999999999999999999
Q ss_pred CCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecC---------CeEEEEECCCCceEEEeeCCC
Q psy9598 694 CSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFN---------FQIKIWDAFNGDLVQVLKGHT 764 (1915)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~D---------g~I~vwD~~tg~~i~~l~gH~ 764 (1915)
+++..... ..+...+.+++|+|||++|++++..+ +.|++||+.+++ +..+..|.
T Consensus 409 tg~~~~~~----------------~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~ 471 (1045)
T 1k32_A 409 TGKPTVIE----------------RSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTEN 471 (1045)
T ss_dssp TCCEEEEE----------------ECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSS
T ss_pred CCceEEec----------------cCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCC
Confidence 88754422 12455678899999999998887622 489999999887 77788898
Q ss_pred CCeEEEEEccCCCCEEEEEecCceEEEEECCCCcccc---cee----------------------------ee----ee-
Q psy9598 765 NEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRG---YKW----------------------------FH----NI- 808 (1915)
Q Consensus 765 ~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~---~~~----------------------------~~----~~- 808 (1915)
..+.+++|+| ++.+|++++.++...+|+........ ... +. ..
T Consensus 472 ~~~~~~~~sp-dG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~ 550 (1045)
T 1k32_A 472 SHDYAPAFDA-DSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSS 550 (1045)
T ss_dssp SBEEEEEECT-TSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCE
T ss_pred cccCCceEcC-CCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceE
Confidence 8999999999 99999999998888888764322100 000 00 00
Q ss_pred ecCCCCcceEEEEEcCCCCEEEE-------------EeCCCeEEEEeCCCCccccc--CCCceeecCCCCeeeecCCCcc
Q psy9598 809 VEGQGEGALFDGKWSPDGTTCAL-------------TDSYGHLLVYGLGGFKRPQN--IPRELFFHTDYRTLNRPNGLFE 873 (1915)
Q Consensus 809 ~~~~~~~~V~~vafSpdg~~Las-------------g~~dG~I~Iwdl~s~~~~~~--l~~~~~F~~d~~~Lv~~~~~~~ 873 (1915)
....+.+.+.+++|+|||.++++ .+..+.|++||+.+++.... -...+.|++|++.|+......+
T Consensus 551 ~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~v~~~~~S~DG~~l~~~~~~~i 630 (1045)
T 1k32_A 551 PINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKNNLTDLRLSADRKTVMVRKDDGK 630 (1045)
T ss_dssp ECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEEEEEEEEEECTTSCEEEEEETTSC
T ss_pred EcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCCcEEEeecCcceEEECCCCCEEEEEcCCcE
Confidence 00113367889999999987875 12345789999988764321 1336789999999886655567
Q ss_pred ceeecccCC
Q psy9598 874 PTYDEVTNL 882 (1915)
Q Consensus 874 ~v~D~~t~~ 882 (1915)
.+||+.+..
T Consensus 631 ~~~d~~~~~ 639 (1045)
T 1k32_A 631 IYTFPLEKP 639 (1045)
T ss_dssp EEEEESSCT
T ss_pred EEEeCccCc
Confidence 799986653
|
| >3hme_A Bromodomain-containing protein 9; BRD9, bromodomain containing 9 isoform 1, LAVS3040, rhabdomyosarcoma antigen MU-RMS-40.8; 2.23A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.6e-23 Score=214.58 Aligned_cols=104 Identities=21% Similarity=0.342 Sum_probs=99.3
Q ss_pred chhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCccccCCCcCCHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhhcC
Q psy9598 115 PFNWKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQ 194 (1915)
Q Consensus 115 ~~~~~~~~~~il~~l~~~~~~~~F~~pvd~~~~pdY~~iIk~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~Lif~N~~~yN~ 194 (1915)
..++++.|..||+.|++++.++||..|||...+||||+||++||||+||++||++|.|.++++|..||+|||.||++||+
T Consensus 11 ~~p~~~~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~ 90 (123)
T 3hme_A 11 STPIQQLLEHFLRQLQRKDPHGFFAFPVTDAIAPGYSMIIKHPMDFGTMKDKIVANEYKSVTEFKADFKLMCDNAMTYNR 90 (123)
T ss_dssp CCHHHHHHHHHHHHHHTTCTTCSSSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSC
T ss_pred CCHHHHHHHHHHHHHHhCCccHhhcCCCChhhccCHHHHCCCCCCHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHH
Q psy9598 195 NKRSKIYIMTTRLSEFAEEHLRRLT 219 (1915)
Q Consensus 195 ~~~s~i~~~a~~l~~~f~~~~~~~~ 219 (1915)
++ |.+|.+|..|++.|++.|.+..
T Consensus 91 ~~-s~~~~~A~~L~~~~~~~~~~~~ 114 (123)
T 3hme_A 91 PD-TVYYKLAKKILHAGFKMMSKER 114 (123)
T ss_dssp TT-SHHHHHHHHHHHHHHHHTCHHH
T ss_pred CC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 77 9999999999999999987653
|
| >3rcw_A Bromodomain-containing protein 1; transcription, structural genomics, structural consortium, SGC; 2.21A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.8e-23 Score=217.12 Aligned_cols=108 Identities=25% Similarity=0.363 Sum_probs=103.0
Q ss_pred chhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCccccCCCcCCHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhhcC
Q psy9598 115 PFNWKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQ 194 (1915)
Q Consensus 115 ~~~~~~~~~~il~~l~~~~~~~~F~~pvd~~~~pdY~~iIk~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~Lif~N~~~yN~ 194 (1915)
..++...|..||+.|++++.++||.+|||...+||||+||++||||+||++||++|.|.++++|..||+|||.||++||+
T Consensus 11 ~~~l~~~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~ 90 (135)
T 3rcw_A 11 LTPLTVLLRSVLDQLQDKDPARIFAQPVSLKEVPDYLDHIKHPMDFATMRKRLEAQGYKNLHEFEEDFDLIIDNCMKYNA 90 (135)
T ss_dssp CCHHHHHHHHHHHHHHHTCTTCSSSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSC
T ss_pred chHHHHHHHHHHHHHHhCCcchhhcCCCChhhcCCHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9598 195 NKRSKIYIMTTRLSEFAEEHLRRLTVRWN 223 (1915)
Q Consensus 195 ~~~s~i~~~a~~l~~~f~~~~~~~~~~~~ 223 (1915)
++ |.+|.+|..|++.|++.|+.+.....
T Consensus 91 ~~-s~~~~~A~~L~~~~~~~~~~~~~~~~ 118 (135)
T 3rcw_A 91 RD-TVFYRAAVRLRDQGGVVLRQARREVD 118 (135)
T ss_dssp TT-SHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CC-CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76 99999999999999999999876654
|
| >3ljw_A Protein polybromo-1; alpha helix, alternative splicing, bromodomain, chromatin RE DNA-binding, nucleus, phosphoprotein, transcription; 1.50A {Homo sapiens} PDB: 2ktb_B* 3hmf_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1.2e-23 Score=214.86 Aligned_cols=106 Identities=25% Similarity=0.417 Sum_probs=101.3
Q ss_pred chhHHHHHHHHHHHHhcCCC------CCCCCCCCCCCCCCCccccCCCcCCHHHHHHHhcCCCCCCHHHHHHHHHHHHHH
Q psy9598 115 PFNWKNECREVLETLWVCPD------SEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHN 188 (1915)
Q Consensus 115 ~~~~~~~~~~il~~l~~~~~------~~~F~~pvd~~~~pdY~~iIk~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~Lif~N 188 (1915)
+..|+..|..||+.|+++.+ +++|.+||+...+||||+||++||||+||++||.++.|.++++|..||+|||.|
T Consensus 6 p~~l~~~~~~ll~~l~~~~d~~g~~~s~~F~~~~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~N 85 (120)
T 3ljw_A 6 PAYLKEILEQLLEAIVVATNPSGRLISELFQKLPSKVQYPDYYAIIKEPIDLKTIAQRIQNGSYKSIHAMAKDIDLLAKN 85 (120)
T ss_dssp HHHHHHHHHHHHHHHHHCBCTTSCBTTGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCcCCCcccHHhcCCCCcccCCChHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHH
Confidence 56789999999999999877 999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q psy9598 189 SRNYNQNKRSKIYIMTTRLSEFAEEHLRRLTVR 221 (1915)
Q Consensus 189 ~~~yN~~~~s~i~~~a~~l~~~f~~~~~~~~~~ 221 (1915)
|++||+++ |.||.+|..|+++|+++|+++...
T Consensus 86 a~~yN~~~-s~~~~~A~~L~~~f~~~~~~i~~~ 117 (120)
T 3ljw_A 86 AKTYNEPG-SQVFKDANSIKKIFYMKKAEIEHH 117 (120)
T ss_dssp HHHHSCTT-SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCC-CHHHHHHHHHHHHHHHHHHHhhhc
Confidence 99999977 999999999999999999998654
|
| >3d7c_A General control of amino acid synthesis protein 5; GCN5, bromodomain, structural genomics consortium, SGC, HOST-virus interaction, nucleus; 2.06A {Homo sapiens} SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A* 1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1.5e-23 Score=211.77 Aligned_cols=105 Identities=30% Similarity=0.467 Sum_probs=100.8
Q ss_pred CchhhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCccccccCccchhhHHhhhcCCCCCCHHHHHHHHHHHHHHhhhhc
Q psy9598 1529 RPFNWKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYN 1608 (1915)
Q Consensus 1529 ~~~~~~~~~~~ll~~l~~~~~s~~F~~pv~~~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~Dv~lif~Na~~yN 1608 (1915)
.+..|...|..||+.|++++.++||+.||++.++||||++|++||||+||++||++|.|.++++|..||+|||.||++||
T Consensus 4 ~~~~l~~~~~~il~~l~~~~~~~~F~~pvd~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN 83 (112)
T 3d7c_A 4 DPDQLYTTLKNLLAQIKSHPSAWPFMEPVKKSEAPDYYEVIRFPIDLKTMTERLRSRYYVTRKLFVADLQRVIANCREYN 83 (112)
T ss_dssp SHHHHHHHHHHHHHHHHHSGGGGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHHHcCCCchhhcCCCCcccccCHHHHccCCcCHHHHHHHHcCCCCcCHHHHHHHHHHHHHHHHHHC
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy9598 1609 QNKRSKIYIMTTRLSEFAEEHLRRLT 1634 (1915)
Q Consensus 1609 ~~~~s~i~~~a~~l~~~f~~~~~~~~ 1634 (1915)
+++ |.+|.+|..|+++|+++++++.
T Consensus 84 ~~~-s~~~~~A~~L~~~f~~~~~~~~ 108 (112)
T 3d7c_A 84 PPD-SEYCRCASALEKFFYFKLKEGG 108 (112)
T ss_dssp CTT-SHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCC-CHHHHHHHHHHHHHHHHHHHCC
Confidence 988 9999999999999999998753
|
| >3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent small and homeotic disks prote homolog, lysine N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.5e-23 Score=216.32 Aligned_cols=107 Identities=21% Similarity=0.276 Sum_probs=101.6
Q ss_pred hhHHHHHHHHHHHHhcCCC------CCCCCCCCCCCCCCCccccCCCcCCHHHHHHHhcCCCCCCHHHHHHHHHHHHHHH
Q psy9598 116 FNWKNECREVLETLWVCPD------SEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNS 189 (1915)
Q Consensus 116 ~~~~~~~~~il~~l~~~~~------~~~F~~pvd~~~~pdY~~iIk~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~Lif~N~ 189 (1915)
..+++.|..|++.|+++.+ ++||.+||+...+||||++|++||||+||++||+++.|.++++|..||+|||.||
T Consensus 8 ~~l~~~~~~i~~~l~~~~d~~g~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na 87 (126)
T 3mqm_A 8 ARLAQIFKEICDGIISYKDSSRQALAAPLLNLPPKKKNADYYEKISDPLDLITIEKQILTGYYKTVEAFDADMLKVFRNA 87 (126)
T ss_dssp HHHHHHHHHHHHHHHHCBCTTCCBTTGGGSSCCCGGGCTTHHHHCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcCCCChhHHhcCCCCcccCCCHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 4688899999999998765 8999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9598 190 RNYNQNKRSKIYIMTTRLSEFAEEHLRRLTVRWN 223 (1915)
Q Consensus 190 ~~yN~~~~s~i~~~a~~l~~~f~~~~~~~~~~~~ 223 (1915)
++||+++ |.+|.+|..|+++|++.++++...+.
T Consensus 88 ~~yN~~~-s~~~~~A~~L~~~f~~~~~~~~~~l~ 120 (126)
T 3mqm_A 88 EKYYGRK-SPVGRDVCRLRKAYYNARHEASAQID 120 (126)
T ss_dssp HHHHCTT-SHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999977 99999999999999999999988764
|
| >3g0l_A Hwalp4, bromodomain adjacent to zinc finger domain protei; BAZB2, KIAA1 WALP4, structural genomics consortium, SGC, transcription; 2.03A {Homo sapiens} PDB: 3q2f_A* 2e7o_A | Back alignment and structure |
|---|
Probab=99.89 E-value=3.2e-23 Score=211.26 Aligned_cols=105 Identities=28% Similarity=0.405 Sum_probs=100.3
Q ss_pred chhhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCccccccCccchhhHHhhhcCCCCCCHHHHHHHHHHHHHHhhhhcC
Q psy9598 1530 PFNWKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQ 1609 (1915)
Q Consensus 1530 ~~~~~~~~~~ll~~l~~~~~s~~F~~pv~~~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~Dv~lif~Na~~yN~ 1609 (1915)
.....+.|..||..|++++.++||+.||+...+||||++|++||||+||++||++|.|.++++|..||+|||.||+.||+
T Consensus 11 ~~~~~~~c~~il~~l~~~~~s~~F~~pv~~~~~pdY~~~I~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~ 90 (117)
T 3g0l_A 11 DSKDLALCSMILTEMETHEDAWPFLLPVNLKLVPGYKKVIKKPMDFSTIREKLSSGQYPNLETFALDVRLVFDNCETFNE 90 (117)
T ss_dssp CTTHHHHHHHHHHHHHTSTTCGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHHHHHHHhCCCchhhcCcCChhhcCChHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 34566889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy9598 1610 NKRSKIYIMTTRLSEFAEEHLRRLTV 1635 (1915)
Q Consensus 1610 ~~~s~i~~~a~~l~~~f~~~~~~~~~ 1635 (1915)
++ |.+|.+|..|+++|+++|+++..
T Consensus 91 ~~-s~~~~~A~~L~~~f~~~~~~~~~ 115 (117)
T 3g0l_A 91 DD-SDIGRAGHNMRKYFEKKWTDTFK 115 (117)
T ss_dssp SS-SHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CC-CHHHHHHHHHHHHHHHHHHHHHc
Confidence 88 99999999999999999999863
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1.2e-21 Score=247.51 Aligned_cols=279 Identities=11% Similarity=-0.010 Sum_probs=218.0
Q ss_pred CeEEEecc--cCCceeeeEEecCCCCcEEEEEEcC--------------CCCEEEEEECC------CcEEEEECCCCcEE
Q psy9598 454 RSLMISSH--KYSNLRQHYVNLGHLSAVFCVLFDK--------------LGEVIVTGADD------LLIKLWRARDGKLL 511 (1915)
Q Consensus 454 ~~~~i~~~--~~~~~~~~~~l~gH~~~V~~vafsp--------------dg~~LaTGs~D------g~I~IWd~~tg~~~ 511 (1915)
..+.+|+. ..........+.+|...|.++++++ .+..|+.++.+ +.|++||+.. ...
T Consensus 93 ~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~ 171 (415)
T 2hqs_A 93 VAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDG-YNQ 171 (415)
T ss_dssp EEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTS-CSC
T ss_pred EEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCC-CCC
Confidence 38899987 5555444467899999999888875 25666666654 7999999974 456
Q ss_pred EEEeCCCCCEEEEEEeCCCCEEEEEeCCC---cEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEE-EEeCCCe
Q psy9598 512 ATLRGCSGEISDIAIDNRNILLAAGTVDK---TIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLA-STSTDGC 587 (1915)
Q Consensus 512 ~~l~gH~~~I~~Lafspdg~~LaSgs~Dg---tIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~-sgs~Dgt 587 (1915)
..+.+|...|.+++|+|+|++|++++.++ .|++||+.++++. .+..|.+.+.+++|+|+ +..|+ +++.+|.
T Consensus 172 ~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spd----g~~la~~~~~~g~ 246 (415)
T 2hqs_A 172 FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPD----GSKLAFALSKTGS 246 (415)
T ss_dssp EEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTT----SSEEEEEECTTSS
T ss_pred EEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCC----CCEEEEEEecCCC
Confidence 77888999999999999999999999875 9999999998875 56778889999999994 46666 6666654
Q ss_pred --EEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeC-CC--eEEEEEecCCCCCceeEEeccC
Q psy9598 588 --IGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSG-DH--HVRVYKMDGVDSPLGILEVEEH 662 (1915)
Q Consensus 588 --I~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~-Dg--~I~IwDl~~~~~~~~i~~l~~h 662 (1915)
|.+||+.++... .+..+...+.+++|+|+|.+|++++. ++ .|.+||+.+.. ...+..|
T Consensus 247 ~~i~~~d~~~~~~~-------------~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~----~~~l~~~ 309 (415)
T 2hqs_A 247 LNLYVMDLASGQIR-------------QVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA----PQRITWE 309 (415)
T ss_dssp CEEEEEETTTCCEE-------------ECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC----CEECCCS
T ss_pred ceEEEEECCCCCEE-------------eCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCC----EEEEecC
Confidence 999998876421 12234577999999999999988876 45 56677774322 3345567
Q ss_pred CCCeeEEEEcCCCCEEEEEeCC---CcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEE
Q psy9598 663 SDKVDSIQWSHSHLRFVSGSRD---GTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITA 739 (1915)
Q Consensus 663 ~~~V~sl~fspdg~~L~sgs~D---G~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~ 739 (1915)
...+.+++|+|+|.+|++++.+ +.|.+||+.++....+ ..+ ..+.+++|+|+|++|+++
T Consensus 310 ~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~l-----------------~~~-~~~~~~~~spdg~~l~~~ 371 (415)
T 2hqs_A 310 GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVL-----------------SST-FLDETPSLAPNGTMVIYS 371 (415)
T ss_dssp SSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEEC-----------------CCS-SSCEEEEECTTSSEEEEE
T ss_pred CCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEEe-----------------cCC-CCcCCeEEcCCCCEEEEE
Confidence 7789999999999999988864 5899999998774321 112 267889999999999998
Q ss_pred EecCC--eEEEEECCCCceEEEeeCCCCCeEEEEEcc
Q psy9598 740 INFNF--QIKIWDAFNGDLVQVLKGHTNEVFVLESHP 774 (1915)
Q Consensus 740 s~~Dg--~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp 774 (1915)
+..++ .|++||+. +..+..+.+|.+.|.+++|+|
T Consensus 372 s~~~~~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~~ 407 (415)
T 2hqs_A 372 SSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSP 407 (415)
T ss_dssp EEETTEEEEEEEETT-SCCEEECCCSSSEEEEEEECC
T ss_pred EcCCCccEEEEEECC-CCcEEEeeCCCCCCcCCcccc
Confidence 87333 89999986 667888999999999999999
|
| >3k2j_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo01D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.5e-23 Score=214.64 Aligned_cols=106 Identities=26% Similarity=0.447 Sum_probs=100.5
Q ss_pred chhHHHHHHHHHHHHhcCCC------CCCCCCCCCCCCCCCccccCCCcCCHHHHHHHhcCCCCCCHHHHHHHHHHHHHH
Q psy9598 115 PFNWKNECREVLETLWVCPD------SEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHN 188 (1915)
Q Consensus 115 ~~~~~~~~~~il~~l~~~~~------~~~F~~pvd~~~~pdY~~iIk~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~Lif~N 188 (1915)
...+..+|..|++.|.++.+ ++||++||+...+||||+||++||||+||++||+++.|.++++|..||+|||.|
T Consensus 15 ~~kl~~~~~~l~~~l~~~~d~~g~~~s~~F~~pv~~~~~PdY~~iIk~PMdL~tI~~kL~~~~Y~s~~ef~~Dv~Lif~N 94 (130)
T 3k2j_A 15 TENLYFQSMQLYDTVRSCRNNQGQLIAEPFYHLPSKKKYPDYYQQIKMPISLQQIRTKLKNQEYETLDHLECDLNLMFEN 94 (130)
T ss_dssp HHHHHHHHHHHHHHHHTCBCSSSCBTTGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhcccCCCccHhhcCCCChhhCccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 45788999999999998765 899999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q psy9598 189 SRNYNQNKRSKIYIMTTRLSEFAEEHLRRLTVR 221 (1915)
Q Consensus 189 ~~~yN~~~~s~i~~~a~~l~~~f~~~~~~~~~~ 221 (1915)
|++||+++ |.||.+|..|+++|+++|+++...
T Consensus 95 a~~yN~~~-s~i~~~A~~L~~~f~~~~~~l~~~ 126 (130)
T 3k2j_A 95 AKRYNVPN-SAIYKRVLKLQQVMQAKKKELARR 126 (130)
T ss_dssp HHHHSCTT-SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCC-CHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999977 999999999999999999998765
|
| >3fkm_X Signaling protein; bromodomain, malaria, structural genomics, structural genomi consortium, SGC; 2.50A {Plasmodium falciparum 3D7} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.8e-23 Score=223.61 Aligned_cols=104 Identities=27% Similarity=0.475 Sum_probs=97.7
Q ss_pred chhHHHHHHHHHHHHhcCCCCCCCCCCCC--CCCCCCccccCCCcCCHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhh
Q psy9598 115 PFNWKNECREVLETLWVCPDSEPFRKPVD--KLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNY 192 (1915)
Q Consensus 115 ~~~~~~~~~~il~~l~~~~~~~~F~~pvd--~~~~pdY~~iIk~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~Lif~N~~~y 192 (1915)
...|++.|..||..|++++.++||..||| ..++||||+||++||||+||++||.++.|.++++|..||+|||.||++|
T Consensus 19 ~~~~~~~~~~il~~L~~~~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~Dv~Lif~Na~~y 98 (166)
T 3fkm_X 19 NKQWYLLANQLILSLSKYEGGHIFEKLVDAKKQNCPDYYDVIKNPMSFSCIKTKLKKGQYAYPSEFVKDVQLIFDNCSLY 98 (166)
T ss_dssp THHHHHHHHHHHHHHTTSTTGGGGSSCCC-----CCCGGGCCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHHHHhCCCChhhcCCCChhhccCCCHHHhcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 46799999999999999999999999999 4579999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy9598 193 NQNKRSKIYIMTTRLSEFAEEHLRRLT 219 (1915)
Q Consensus 193 N~~~~s~i~~~a~~l~~~f~~~~~~~~ 219 (1915)
|+++ |.||.+|..|+++|+++|+.+.
T Consensus 99 N~~~-s~i~~~A~~L~~~f~~~l~~~~ 124 (166)
T 3fkm_X 99 NTSN-SVVAITGKNIETYFNNQLIVMG 124 (166)
T ss_dssp SCTT-SHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCC-CHHHHHHHHHHHHHHHHHHHcc
Confidence 9977 9999999999999999998865
|
| >3iu5_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.9e-23 Score=212.33 Aligned_cols=104 Identities=22% Similarity=0.390 Sum_probs=98.3
Q ss_pred hhHHHHHHHHHHHHhcCCC------CCCCCCCCCCCCCCCccccCCCcCCHHHHHHHhcCCCCCCHHHHHHHHHHHHHHH
Q psy9598 116 FNWKNECREVLETLWVCPD------SEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNS 189 (1915)
Q Consensus 116 ~~~~~~~~~il~~l~~~~~------~~~F~~pvd~~~~pdY~~iIk~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~Lif~N~ 189 (1915)
......|..||+.|+++.+ ++||.+||+...+||||+||++||||+||++||+++.|.++++|..||+|||.||
T Consensus 4 ~~~~~~c~~il~~l~~~~d~~g~~~s~~F~~p~~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na 83 (116)
T 3iu5_A 4 VDPIAVCHELYNTIRDYKDEQGRLLCELFIRAPKRRNQPDYYEVVSQPIDLMKIQQKLKMEEYDDVNLLTADFQLLFNNA 83 (116)
T ss_dssp CCHHHHHHHHHHHHHHCBCTTCCBGGGGGSSCCCGGGCHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccCCCeeeHHhcCCCCcccCCCHHHHhCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 3567889999999998854 8999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy9598 190 RNYNQNKRSKIYIMTTRLSEFAEEHLRRLTV 220 (1915)
Q Consensus 190 ~~yN~~~~s~i~~~a~~l~~~f~~~~~~~~~ 220 (1915)
++||+++ |.+|.+|..|+++|++.++++..
T Consensus 84 ~~yN~~~-s~~~~~A~~L~~~f~~~~~~l~~ 113 (116)
T 3iu5_A 84 KSYYKPD-SPEYKAACKLWDLYLRTRNEFVQ 113 (116)
T ss_dssp HHHSCTT-SHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHCCCC-CHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999977 99999999999999999998864
|
| >3jvl_A Bromodomain-containing protein 4; alpha helical, N-acetyl lysine binding domain, signaling protein; 1.20A {Mus musculus} PDB: 3jvm_A 2dww_A 2i8n_A 3oni_A* 2dvv_A* 2e3k_A* 2g4a_A 3s92_A* 2oo1_A* 2e7n_A 2wp1_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.1e-23 Score=215.76 Aligned_cols=106 Identities=26% Similarity=0.468 Sum_probs=98.8
Q ss_pred CchhHHHHHHHHHHHHhcCCC---CCCCCCCCCCCC--CCCccccCCCcCCHHHHHHHhcCCCCCCHHHHHHHHHHHHHH
Q psy9598 114 RPFNWKNECREVLETLWVCPD---SEPFRKPVDKLD--HPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHN 188 (1915)
Q Consensus 114 ~~~~~~~~~~~il~~l~~~~~---~~~F~~pvd~~~--~pdY~~iIk~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~Lif~N 188 (1915)
...+..+.|..||..|++++. +|||.+|||... +||||+||++||||+||++||+++.|.++++|..||+|||.|
T Consensus 6 ~~~~~l~~c~~il~~l~~~~~~~~a~~F~~pvd~~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~N 85 (120)
T 3jvl_A 6 KISEQLKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLESREYRDAQEFGADVRLMFSN 85 (120)
T ss_dssp SSCHHHHHHHHHHHHHTSGGGHHHHGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhCcCccccchhcCCCCchhcCCCCHHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHH
Confidence 345678999999999999888 899999999655 999999999999999999999999999999999999999999
Q ss_pred HhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy9598 189 SRNYNQNKRSKIYIMTTRLSEFAEEHLRRLTV 220 (1915)
Q Consensus 189 ~~~yN~~~~s~i~~~a~~l~~~f~~~~~~~~~ 220 (1915)
|++||+++ |.||.+|..|+++|+++|+++..
T Consensus 86 a~~yN~~~-s~~~~~A~~L~~~f~~~~~~~p~ 116 (120)
T 3jvl_A 86 CYKYNPPD-HEVVAMARKLQDVFEMRFAKMPD 116 (120)
T ss_dssp HHHHSCTT-SHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHCCCC-CHHHHHHHHHHHHHHHHHHHCcC
Confidence 99999977 99999999999999999987743
|
| >2d9e_A Peregrin; four-helix bundle, transcription activator, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=5.2e-23 Score=209.93 Aligned_cols=107 Identities=26% Similarity=0.330 Sum_probs=102.0
Q ss_pred hhhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCccccccCccchhhHHhhhcCCCCCCHHHHHHHHHHHHHHhhhhcCC
Q psy9598 1531 FNWKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQN 1610 (1915)
Q Consensus 1531 ~~~~~~~~~ll~~l~~~~~s~~F~~pv~~~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~Dv~lif~Na~~yN~~ 1610 (1915)
..|...|..||+.|++++.++||+.||+..++||||++|++||||+||++||++|.|.++++|..||+|||.||+.||++
T Consensus 6 ~pl~~~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~ 85 (121)
T 2d9e_A 6 SGFLILLRKTLEQLQEKDTGNIFSEPVPLSEVPDYLDHIKKPMDFFTMKQNLEAYRYLNFDDFEEDFNLIVSNCLKYNAK 85 (121)
T ss_dssp CHHHHHHHHHHHHHHHHCSSCSSSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCT
T ss_pred cHHHHHHHHHHHHHHcCCccHhhCCcCCccccCCHHHHcCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 45778999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy9598 1611 KRSKIYIMTTRLSEFAEEHLRRLTVRWN 1638 (1915)
Q Consensus 1611 ~~s~i~~~a~~l~~~f~~~~~~~~~~~~ 1638 (1915)
+ |.+|.+|..|++.|+.+++++....+
T Consensus 86 ~-s~~~~~A~~L~~~~~~~l~~~~~~~~ 112 (121)
T 2d9e_A 86 D-TIFYRAAVRLREQGGAVLRQARRQAE 112 (121)
T ss_dssp T-SHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8 99999999999999999999876544
|
| >2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1, chromatin remodelling, acely-lysine binding, protein-protein interactions; 1.50A {Homo sapiens} PDB: 3uvd_A 2h60_A | Back alignment and structure |
|---|
Probab=99.88 E-value=3.5e-23 Score=213.97 Aligned_cols=109 Identities=22% Similarity=0.356 Sum_probs=103.0
Q ss_pred cCCchhhHHHHHHHHHHHHcCC-------CCCCCCCCCCCCCCCCccccccCccchhhHHhhhcCCCCCCHHHHHHHHHH
Q psy9598 1527 LKRPFNWKNECREVLETLWVCP-------DSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKR 1599 (1915)
Q Consensus 1527 ~~~~~~~~~~~~~ll~~l~~~~-------~s~~F~~pv~~~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~Dv~l 1599 (1915)
...++.|.+.|..||+.|++++ .++||+.||+...+||||+||++||||+||++||.+|.|.++.+|..||+|
T Consensus 6 ~~~~~~l~~~~~~il~~l~~~~d~~~~~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~L 85 (129)
T 2grc_A 6 SPNPPNLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVML 85 (129)
T ss_dssp CCCCHHHHHHHHHHHHHHHHCBCTTTCCBGGGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHhcccccccCeeeHHhcCCCCcccCCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 4567889999999999999876 379999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy9598 1600 VFHNSRNYNQNKRSKIYIMTTRLSEFAEEHLRRLTVR 1636 (1915)
Q Consensus 1600 if~Na~~yN~~~~s~i~~~a~~l~~~f~~~~~~~~~~ 1636 (1915)
||+||++||+++ |.+|.+|..|+++|+++++++...
T Consensus 86 i~~Na~~yN~~~-s~i~~~A~~L~~~f~~~~~~l~~~ 121 (129)
T 2grc_A 86 LCQNAQTFNLEG-SLIYEDSIVLQSVFTSVRQKIEKE 121 (129)
T ss_dssp HHHHHHHHSCTT-SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHHHccCC
Confidence 999999999988 999999999999999999998853
|
| >2dat_A Possible global transcription activator SNF2L2; bromodomain, all alpha protein, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.5e-23 Score=213.35 Aligned_cols=106 Identities=24% Similarity=0.363 Sum_probs=100.5
Q ss_pred CCchhhHHHHHHHHHHHHcCC------CCCCCCCCCCCCCCCCccccccCccchhhHHhhhcCCCCCCHHHHHHHHHHHH
Q psy9598 1528 KRPFNWKNECREVLETLWVCP------DSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVF 1601 (1915)
Q Consensus 1528 ~~~~~~~~~~~~ll~~l~~~~------~s~~F~~pv~~~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~Dv~lif 1601 (1915)
..+..+.+.|..||+.|++++ .++||+.||+..++||||++|++||||+||++||+++.|.++++|..||+|||
T Consensus 9 ~~~~~l~~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~ 88 (123)
T 2dat_A 9 PNPPKLTKQMNAIIDTVINYKDSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLGDLEKDVMLLC 88 (123)
T ss_dssp CCCHHHHHHHHHHHHHHHHCBCSSSCBSGGGGTSCCCTTTSCHHHHHCSSCCCHHHHHHHHTTTCCCSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhhcccCCeeeHHhcCCCCcccCCCHHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 456789999999999999986 48999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy9598 1602 HNSRNYNQNKRSKIYIMTTRLSEFAEEHLRRLT 1634 (1915)
Q Consensus 1602 ~Na~~yN~~~~s~i~~~a~~l~~~f~~~~~~~~ 1634 (1915)
.||++||+++ |.||.+|..|+++|++++++++
T Consensus 89 ~Na~~yN~~~-s~i~~~A~~L~~~f~~~~~~~p 120 (123)
T 2dat_A 89 HNAQTFNLEG-SQIYEDSIVLQSVFKSARQSGP 120 (123)
T ss_dssp HHHHHHSCTT-SHHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHCCCC-CHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999988 9999999999999999998765
|
| >2i7k_A Bromodomain-containing protein 7; helix, LEFT-handed four-helix bundle, transcription; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=6.5e-23 Score=207.46 Aligned_cols=103 Identities=21% Similarity=0.340 Sum_probs=99.2
Q ss_pred hhhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCccccccCccchhhHHhhhcCCCCCCHHHHHHHHHHHHHHhhhhcCC
Q psy9598 1531 FNWKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQN 1610 (1915)
Q Consensus 1531 ~~~~~~~~~ll~~l~~~~~s~~F~~pv~~~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~Dv~lif~Na~~yN~~ 1610 (1915)
..+...|..||+.|++++.++||..||++.++||||+||++||||+||++||++|.|.++++|..||+|||.||++||++
T Consensus 7 ~~l~~~l~~il~~L~~~~~~~~F~~PVd~~~~pdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~Na~~yN~~ 86 (117)
T 2i7k_A 7 TPLQEALNQLMRQLQRKDPSAFFSFPVTDFIAPGYSMIIKHPMDFSTMKEKIKNNDYQSIEELKDNFKLMCTNAMIYNKP 86 (117)
T ss_dssp HHHHHHHHHHHHHHHTSSGGGTSSSCCCTTTSSSHHHHCSCCCCHHHHHHHHTTTSCCSHHHHHHHHHHHHHHHHHTSCS
T ss_pred HHHHHHHHHHHHHHHhCcccHHhcCCCCccccCCHHHHhCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 45778999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHH
Q psy9598 1611 KRSKIYIMTTRLSEFAEEHLRRLT 1634 (1915)
Q Consensus 1611 ~~s~i~~~a~~l~~~f~~~~~~~~ 1634 (1915)
+ |.+|.+|..|++.|++++....
T Consensus 87 ~-s~i~~~A~~L~~~f~~~~~~~~ 109 (117)
T 2i7k_A 87 E-TIYYKAAKKLLHSGMKILSQER 109 (117)
T ss_dssp S-SSHHHHHHHHHHHHHHHHHHHT
T ss_pred C-CHHHHHHHHHHHHHHHHHHHHH
Confidence 8 9999999999999999998765
|
| >3nxb_A CAT eye syndrome critical region protein 2; structural genomics consortium, SGC, CECR2, CAT eye syndrome chromosome region candidate 2, bromodomain; 1.83A {Homo sapiens} SCOP: a.29.2.0 | Back alignment and structure |
|---|
Probab=99.88 E-value=5.6e-23 Score=209.11 Aligned_cols=102 Identities=30% Similarity=0.474 Sum_probs=97.4
Q ss_pred chhhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCccccccCccchhhHHhhhcCCCCCCHHHHHHHHHHHHHHhhhhcC
Q psy9598 1530 PFNWKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQ 1609 (1915)
Q Consensus 1530 ~~~~~~~~~~ll~~l~~~~~s~~F~~pv~~~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~Dv~lif~Na~~yN~ 1609 (1915)
...+.+.|..||..|++++.++||..||+...+||||++|++||||+||++||++|.|.++++|..||+|||.||+.||+
T Consensus 14 ~~~~~~~~~~il~~l~~~~~s~~F~~pv~~~~~pdY~~~I~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~ 93 (116)
T 3nxb_A 14 LDDDFTAMYKVLDVVKAHKDSWPFLEPVDESYAPNYYQIIKAPMDISSMEKKLNGGLYCTKEEFVNDMKTMFRNCRKYNG 93 (116)
T ss_dssp -CCHHHHHHHHHHHHHHSTTCGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHhCCCcHhhcCcCChhhccChHHHcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 34578899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Q psy9598 1610 NKRSKIYIMTTRLSEFAEEHLRR 1632 (1915)
Q Consensus 1610 ~~~s~i~~~a~~l~~~f~~~~~~ 1632 (1915)
++ |.+|.+|..|+++|+++|.+
T Consensus 94 ~~-s~~~~~A~~L~~~f~~~~~k 115 (116)
T 3nxb_A 94 ES-SEYTKMSDNLERCFHRAMMK 115 (116)
T ss_dssp TT-CHHHHHHHHHHHHHHHHHHC
T ss_pred CC-CHHHHHHHHHHHHHHHHHhh
Confidence 88 99999999999999998863
|
| >1e6i_A Transcriptional activator GCN5; gene regulation, bromodomain, histone binding, N-acetyl lysine; HET: ALY; 1.87A {Saccharomyces cerevisiae} SCOP: a.29.2.1 | Back alignment and structure |
|---|
Probab=99.88 E-value=5.8e-23 Score=209.83 Aligned_cols=102 Identities=29% Similarity=0.547 Sum_probs=98.1
Q ss_pred hhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCccccccCccchhhHHhhhcCCCCCCHHHHHHHHHHHHHHhhhhcCCC
Q psy9598 1532 NWKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQNK 1611 (1915)
Q Consensus 1532 ~~~~~~~~ll~~l~~~~~s~~F~~pv~~~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~Dv~lif~Na~~yN~~~ 1611 (1915)
.+...|..||+.|++++.++||+.||+..++||||++|++||||+||++||++|.|.++++|..||+|||+||++||+++
T Consensus 13 ~~~~~~~~il~~l~~~~~a~~F~~pvd~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~ 92 (121)
T 1e6i_A 13 PHDAAIQNILTELQNHAAAWPFLQPVNKEEVPDYYDFIKEPMDLSTMEIKLESNKYQKMEDFIYDARLVFNNCRMYNGEN 92 (121)
T ss_dssp TTHHHHHHHHHHHHHSTTCGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHHcCCCchhhCCCCChhhCcCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHH
Q psy9598 1612 RSKIYIMTTRLSEFAEEHLRRLT 1634 (1915)
Q Consensus 1612 ~s~i~~~a~~l~~~f~~~~~~~~ 1634 (1915)
|.+|.+|..|+++|+++++.++
T Consensus 93 -s~i~~~A~~L~~~f~~~~~~~p 114 (121)
T 1e6i_A 93 -TSYYKYANRLEKFFNNKVKEIP 114 (121)
T ss_dssp -SHHHHHHHHHHHHHHHHHHTSG
T ss_pred -CHHHHHHHHHHHHHHHHHHHcc
Confidence 9999999999999999999874
|
| >4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor, histone, epigenetic reader; HET: 1GH; 1.60A {Homo sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A* 4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A* 2ydw_A* 2yw5_A | Back alignment and structure |
|---|
Probab=99.87 E-value=4.5e-23 Score=219.20 Aligned_cols=108 Identities=28% Similarity=0.517 Sum_probs=101.2
Q ss_pred CCchhhHHHHHHHHHHHHcCCCCCCCCCCCCCC--CCCCccccccCccchhhHHhhhcCCCCCCHHHHHHHHHHHHHHhh
Q psy9598 1528 KRPFNWKNECREVLETLWVCPDSEPFRKPVDKL--DHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSR 1605 (1915)
Q Consensus 1528 ~~~~~~~~~~~~ll~~l~~~~~s~~F~~pv~~~--~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~Dv~lif~Na~ 1605 (1915)
.....++..|..||+.|++++.++||+.||+.. ++||||+||++||||+||++||+++.|.++++|..||+|||.||+
T Consensus 28 r~t~~l~~~~~~il~~l~~~~~a~~F~~PVd~~~~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~Na~ 107 (154)
T 4alg_A 28 RVTNQLQYLHKVVMKALWKHQFAWPFRQPVDAVKLGLPDYHKIIKQPMDMGTIKRRLENNYYWAASECMQDFNTMFTNCY 107 (154)
T ss_dssp CCBHHHHHHHHTHHHHHHTSTTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHhCcCchhhcCCCChhhccCCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 345678888999999999999999999999966 799999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy9598 1606 NYNQNKRSKIYIMTTRLSEFAEEHLRRLTVR 1636 (1915)
Q Consensus 1606 ~yN~~~~s~i~~~a~~l~~~f~~~~~~~~~~ 1636 (1915)
+||+++ |.||.+|..|+++|+++++++...
T Consensus 108 ~YN~~~-s~i~~~A~~L~~~f~~~~~~l~~~ 137 (154)
T 4alg_A 108 IYNKPT-DDIVLMAQTLEKIFLQKVASMPQE 137 (154)
T ss_dssp HHSCTT-SHHHHHHHHHHHHHHHHHTTSCSS
T ss_pred HHCCCC-CHHHHHHHHHHHHHHHHHHHCCch
Confidence 999988 999999999999999999987643
|
| >3ljw_A Protein polybromo-1; alpha helix, alternative splicing, bromodomain, chromatin RE DNA-binding, nucleus, phosphoprotein, transcription; 1.50A {Homo sapiens} PDB: 2ktb_B* 3hmf_A | Back alignment and structure |
|---|
Probab=99.87 E-value=8.1e-23 Score=208.84 Aligned_cols=107 Identities=25% Similarity=0.412 Sum_probs=102.2
Q ss_pred CchhhHHHHHHHHHHHHcCCC------CCCCCCCCCCCCCCCccccccCccchhhHHhhhcCCCCCCHHHHHHHHHHHHH
Q psy9598 1529 RPFNWKNECREVLETLWVCPD------SEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFH 1602 (1915)
Q Consensus 1529 ~~~~~~~~~~~ll~~l~~~~~------s~~F~~pv~~~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~Dv~lif~ 1602 (1915)
.+..|++.|..||+.|+++++ ++||..||+..++||||++|++||||+||++||.+|.|.++++|..||+|||.
T Consensus 5 ~p~~l~~~~~~ll~~l~~~~d~~g~~~s~~F~~~~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~ 84 (120)
T 3ljw_A 5 SPAYLKEILEQLLEAIVVATNPSGRLISELFQKLPSKVQYPDYYAIIKEPIDLKTIAQRIQNGSYKSIHAMAKDIDLLAK 84 (120)
T ss_dssp CHHHHHHHHHHHHHHHHHCBCTTSCBTTGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhccCcCCCcccHHhcCCCCcccCCChHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHH
Confidence 467899999999999999877 99999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy9598 1603 NSRNYNQNKRSKIYIMTTRLSEFAEEHLRRLTVR 1636 (1915)
Q Consensus 1603 Na~~yN~~~~s~i~~~a~~l~~~f~~~~~~~~~~ 1636 (1915)
||+.||+++ |.+|.+|..|+++|+++++++...
T Consensus 85 Na~~yN~~~-s~~~~~A~~L~~~f~~~~~~i~~~ 117 (120)
T 3ljw_A 85 NAKTYNEPG-SQVFKDANSIKKIFYMKKAEIEHH 117 (120)
T ss_dssp HHHHHSCTT-SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCC-CHHHHHHHHHHHHHHHHHHHhhhc
Confidence 999999988 999999999999999999998753
|
| >3uv4_A Second bromodomain of human transcription initiat TFIID subunit 1 (TAF1); structural genomics consortium, SGC; 1.89A {Homo sapiens} PDB: 3hmh_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1.5e-22 Score=215.59 Aligned_cols=105 Identities=29% Similarity=0.482 Sum_probs=95.7
Q ss_pred HHHHHHHHHHH-HhcCCCCCCCCCCCCCCCCCCccccCCCcCCHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhhcCCC
Q psy9598 118 WKNECREVLET-LWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQNK 196 (1915)
Q Consensus 118 ~~~~~~~il~~-l~~~~~~~~F~~pvd~~~~pdY~~iIk~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~Lif~N~~~yN~~~ 196 (1915)
+...+..|+.. |++++.++||..|||...+||||+||++||||+||++||+++.|.++++|..||+|||.||++||+++
T Consensus 30 l~~iL~~i~~~kl~~~~~s~~F~~PVd~~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~Na~~yN~~~ 109 (158)
T 3uv4_A 30 FSFILDNIVTQKMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPE 109 (158)
T ss_dssp HHHHHHHHHHHTTTTSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHcCCCchhhcCcCChhhcccHHHHcCCccCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 44445555543 67789999999999999999999999999999999999999999999999999999999999999977
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9598 197 RSKIYIMTTRLSEFAEEHLRRLTVRWN 223 (1915)
Q Consensus 197 ~s~i~~~a~~l~~~f~~~~~~~~~~~~ 223 (1915)
|.||.+|..|+++|++.|+++...+.
T Consensus 110 -s~i~~~A~~L~~~~~~~l~e~~~~l~ 135 (158)
T 3uv4_A 110 -SQYTKTAQEIVNVCYQTLTEYDEHLT 135 (158)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred -CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988775
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.87 E-value=1.2e-21 Score=265.58 Aligned_cols=328 Identities=11% Similarity=-0.006 Sum_probs=226.3
Q ss_pred cEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCC---CEEEEEEeCCCCEEEEEeCC---------CcEEEE
Q psy9598 478 AVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSG---EISDIAIDNRNILLAAGTVD---------KTIRIW 545 (1915)
Q Consensus 478 ~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~---~I~~Lafspdg~~LaSgs~D---------gtIrVW 545 (1915)
.+.+++|+|||+++++ +.||+|++||+.+++....+.+|.. .|.+++|||||++|++++.+ +.|.+|
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~ 96 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS 96 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEE
Confidence 3668899999998877 7899999999999998888887775 49999999999999999874 788899
Q ss_pred ECCCCceEEEee---cCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccc-ccccc-----CC
Q psy9598 546 NLQTLAPISVLV---GHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVM-FNERI-----RP 616 (1915)
Q Consensus 546 Dl~tg~~~~~l~---~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~-~~~~~-----~~ 616 (1915)
|+.++.. ..+. +|...+.+++|+|+ ++.|++++. +.|.+||+.++............. +.... ..
T Consensus 97 d~~~~~~-~~l~~~~~~~~~~~~~~~SPd----G~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee 170 (723)
T 1xfd_A 97 KIPHGDP-QSLDPPEVSNAKLQYAGWGPK----GQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEE 170 (723)
T ss_dssp ESSSCCC-EECCCTTCCSCCCSBCCBCSS----TTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHT
T ss_pred ECCCCce-EeccCCccccccccccEECCC----CCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEE
Confidence 9999876 3333 34556899999994 488888886 799999998875432221110000 00000 00
Q ss_pred CCCceEEEEECCCCcEEEEEeCCC----------------------------------eEEEEEecCCCCCceeEEecc-
Q psy9598 617 GNAHILCSSFSPGGLFLATGSGDH----------------------------------HVRVYKMDGVDSPLGILEVEE- 661 (1915)
Q Consensus 617 ~~~~V~~l~fspdg~~Lasgs~Dg----------------------------------~I~IwDl~~~~~~~~i~~l~~- 661 (1915)
-...+.+++|||||+.|++++.++ .|++||+.+.. ....+..
T Consensus 171 ~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~---~~~~l~~~ 247 (723)
T 1xfd_A 171 ILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPT---HDLEMMPP 247 (723)
T ss_dssp TSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSC---CCEECCCC
T ss_pred eccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCc---eeEEeeCC
Confidence 012347899999999999887553 78999985432 2233333
Q ss_pred -----CCCCeeEEEEcCCCCEEEEEeC----CCcEEEEEccCCceEEeeecccccCCCCccccccccccccE----EEEE
Q psy9598 662 -----HSDKVDSIQWSHSHLRFVSGSR----DGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKV----TMVA 728 (1915)
Q Consensus 662 -----h~~~V~sl~fspdg~~L~sgs~----DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V----~~va 728 (1915)
|...+.+++|+|+|++|++++. ++.|.+||+.++++....... +...+ ..++
T Consensus 248 ~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~---------------~~~~~~~~~~~~~ 312 (723)
T 1xfd_A 248 DDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDE---------------SEAWLHRQNEEPV 312 (723)
T ss_dssp CCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEE---------------CSSCCCCCCCCCE
T ss_pred ccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEec---------------cCCEEeccCCCce
Confidence 3667999999999998877653 357999999988755432110 01111 3579
Q ss_pred ECCCCCEEEEE-EecCC------eEEEEE-CCCCc--eEEEeeCCCCCeEE-EEEccCCCCEEEEEecC---ceEEEEEC
Q psy9598 729 WDASDRWVITA-INFNF------QIKIWD-AFNGD--LVQVLKGHTNEVFV-LESHPFDSRVLLSAGHD---GLIIIWDI 794 (1915)
Q Consensus 729 ~spdg~~L~t~-s~~Dg------~I~vwD-~~tg~--~i~~l~gH~~~V~s-l~~sp~dg~~LaSgs~D---G~I~IWdl 794 (1915)
|+|+|+.|+.+ +..++ .|++|| ..++. ++..+..+...+.. ++|+| +++.|+..+.+ +.+.||++
T Consensus 313 ~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~l~~~ 391 (723)
T 1xfd_A 313 FSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDE-KGNKIYFLSTEDLPRRRQLYSA 391 (723)
T ss_dssp ECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEET-TTTEEEEEESSSCTTCCEEEEE
T ss_pred EcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcC-CCCEEEEEEcCCCCcceEEEEE
Confidence 99999988765 44466 577788 34444 15555544444554 69999 88888766655 78999998
Q ss_pred CCCccccceeeeeeecCC--CCcceEEEEEcCCCCEEEEEeCC
Q psy9598 795 LSSKQRGYKWFHNIVEGQ--GEGALFDGKWSPDGTTCALTDSY 835 (1915)
Q Consensus 795 ~s~~~~~~~~~~~~~~~~--~~~~V~~vafSpdg~~Lasg~~d 835 (1915)
..........+. .. +.+.+..++|+|||++|++....
T Consensus 392 ~~~~~~~~~~l~----~~~~~~~~~~~~~~spdg~~l~~~~~~ 430 (723)
T 1xfd_A 392 NTVGNFNRQCLS----CDLVENCTYFSASFSHSMDFFLLKCEG 430 (723)
T ss_dssp CSSTTCCCBCSS----TTSSSSCCCCEEEECTTSSEEEEECCS
T ss_pred eCCCCCCcceec----ccccCCCCeEEEEECCCCCEEEEEccC
Confidence 754310011111 11 34568899999999998876543
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=8.6e-21 Score=256.64 Aligned_cols=333 Identities=13% Similarity=0.073 Sum_probs=227.3
Q ss_pred EEEEEEcCCCCEEEEEECCCcEEEEECCCCcEE-EEEeCCC-----------------CCEEEEEEeCCCCEEEEEeCCC
Q psy9598 479 VFCVLFDKLGEVIVTGADDLLIKLWRARDGKLL-ATLRGCS-----------------GEISDIAIDNRNILLAAGTVDK 540 (1915)
Q Consensus 479 V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~-~~l~gH~-----------------~~I~~Lafspdg~~LaSgs~Dg 540 (1915)
+..+.|+ |..+++++.+| | +||+.+|+.+ ..+..|. ..|.+++|+|| ..|+.+. ++
T Consensus 28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~-~~ 101 (706)
T 2z3z_A 28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFT-QG 101 (706)
T ss_dssp CTTCEEE--TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEEE-TT
T ss_pred CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEEE-CC
Confidence 4457777 66778888888 8 9999999874 4444333 56999999999 6665554 59
Q ss_pred cEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEeccc-----CccccceeccCcccccc--c
Q psy9598 541 TIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKL-----DIDISKTVFHEPVMFNE--R 613 (1915)
Q Consensus 541 tIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~-----~~~~~~~~~~~~~~~~~--~ 613 (1915)
.|++||+.++.... +..+...+.+++|+|+ ++.|+++ .++.|.+|++.+ +................ .
T Consensus 102 ~i~~~d~~~~~~~~-l~~~~~~~~~~~~Spd----G~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~ 175 (706)
T 2z3z_A 102 GLVGFDMLARKVTY-LFDTNEETASLDFSPV----GDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAV 175 (706)
T ss_dssp EEEEEETTTTEEEE-EECCTTCCTTCEECTT----SSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCC
T ss_pred EEEEEECCCCceEE-ccCCcccccCCcCCCC----CCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccch
Confidence 99999999887654 4456778999999994 4788885 689999999987 54322111110000000 0
Q ss_pred cCCCCCceEEEEECCCCcEEEEEe---------------------------------CCCeEEEEEecCCCCCceeEEec
Q psy9598 614 IRPGNAHILCSSFSPGGLFLATGS---------------------------------GDHHVRVYKMDGVDSPLGILEVE 660 (1915)
Q Consensus 614 ~~~~~~~V~~l~fspdg~~Lasgs---------------------------------~Dg~I~IwDl~~~~~~~~i~~l~ 660 (1915)
...+...+.+++|+|||++|++++ .++.|++||+.+.. ...+....
T Consensus 176 ~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~-~~~~~~~~ 254 (706)
T 2z3z_A 176 HQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGK-TVYLQTGE 254 (706)
T ss_dssp GGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTE-EEECCCCS
T ss_pred hhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCc-eEeeccCC
Confidence 001112357899999999999987 44689999984322 11111122
Q ss_pred cCCCCeeEEEEcCCCCEEEEEeCCC-----cEEEEEccCC-ceEEeeecccccCCCCccccccccccccEEEEEECC--C
Q psy9598 661 EHSDKVDSIQWSHSHLRFVSGSRDG-----TALIWYYKCS-QWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDA--S 732 (1915)
Q Consensus 661 ~h~~~V~sl~fspdg~~L~sgs~DG-----~I~IWDl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~sp--d 732 (1915)
.|...+.+++|+|+|++|++++.++ .|.+||+.++ ....+..... ......+.+++|+| +
T Consensus 255 ~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~------------~~~~~~~~~~~~sp~~d 322 (706)
T 2z3z_A 255 PKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETD------------KHYVEPLHPLTFLPGSN 322 (706)
T ss_dssp CTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEEC------------SSCCCCCSCCEECTTCS
T ss_pred CCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccC------------CCeECccCCceeecCCC
Confidence 5677899999999999999988776 8999999988 4322211000 00111235689999 9
Q ss_pred CCEEEEEEecCCeEEEEECC-CCceEEEeeCCCCCeEE-EEEccCCCCEEEEEe-cCc----eEEEEECCCCccccceee
Q psy9598 733 DRWVITAINFNFQIKIWDAF-NGDLVQVLKGHTNEVFV-LESHPFDSRVLLSAG-HDG----LIIIWDILSSKQRGYKWF 805 (1915)
Q Consensus 733 g~~L~t~s~~Dg~I~vwD~~-tg~~i~~l~gH~~~V~s-l~~sp~dg~~LaSgs-~DG----~I~IWdl~s~~~~~~~~~ 805 (1915)
|.+|+++.. ++.++||.+. ++..+..+..|...|.. ++|+| ++..|+.++ .++ .|.+||+.++.. ..+
T Consensus 323 g~~l~~~~~-~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~sp-dg~~l~~~~~~~~~~~~~l~~~d~~~~~~---~~l 397 (706)
T 2z3z_A 323 NQFIWQSRR-DGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDP-KGTRLYFESTEASPLERHFYCIDIKGGKT---KDL 397 (706)
T ss_dssp SEEEEEECT-TSSCEEEEEETTSCEEEECCCSSSCEEEEEEECT-TSSEEEEEESSSCTTCBEEEEEETTCCCC---EES
T ss_pred CEEEEEEcc-CCccEEEEEECCCCEEEecCCCCeEEEeeeEEcC-CCCEEEEEecCCCCceEEEEEEEcCCCCc---eec
Confidence 998887766 8888999876 67788888888888877 79999 777665554 444 677777776553 111
Q ss_pred eeeecCCCCcceEEEEEcCCCCEEEEEeCC----CeEEEEeCCCCc
Q psy9598 806 HNIVEGQGEGALFDGKWSPDGTTCALTDSY----GHLLVYGLGGFK 847 (1915)
Q Consensus 806 ~~~~~~~~~~~V~~vafSpdg~~Lasg~~d----G~I~Iwdl~s~~ 847 (1915)
.+...+.+++|||||++|+++..+ +.|++|++.+++
T Consensus 398 ------~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 398 ------TPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp ------CCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred ------cCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 134568899999999999887554 569999998876
|
| >3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 1.66A {Homo sapiens} PDB: 3g0j_A 2yqd_A | Back alignment and structure |
|---|
Probab=99.87 E-value=8.5e-23 Score=209.98 Aligned_cols=106 Identities=27% Similarity=0.361 Sum_probs=99.6
Q ss_pred CCchhhHHHHHHHHHHHHcCCC------CCCCCCCCCCCCCCCccccccCccchhhHHhhhcCCCCCCHHHHHHHHHHHH
Q psy9598 1528 KRPFNWKNECREVLETLWVCPD------SEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVF 1601 (1915)
Q Consensus 1528 ~~~~~~~~~~~~ll~~l~~~~~------s~~F~~pv~~~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~Dv~lif 1601 (1915)
.....|++.|..||+.|+++.+ ++||..||+..++||||++|++||||+||++||++|.|.++++|..||+|||
T Consensus 11 k~~~~l~~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~ 90 (124)
T 3mb4_A 11 KYMTPMQQKLNEVYEAVKNYTDKRGRRLSAIFLRLPSRSELPDYYLTIKKPMDMEKIRSHMMANKYQDIDSMVEDFVMMF 90 (124)
T ss_dssp CCCCHHHHHHHHHHHHHHHCBCTTSCBGGGGGSCCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHH
T ss_pred ccChHHHHHHHHHHHHHHhHhcccCCcccHHhhcCCCccccCCHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 4456789999999999998544 6999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy9598 1602 HNSRNYNQNKRSKIYIMTTRLSEFAEEHLRRLT 1634 (1915)
Q Consensus 1602 ~Na~~yN~~~~s~i~~~a~~l~~~f~~~~~~~~ 1634 (1915)
.||++||+++ |.||.+|..|+++|+++|+++.
T Consensus 91 ~Na~~yN~~~-s~i~~~A~~L~~~f~~~~~~l~ 122 (124)
T 3mb4_A 91 NNACTYNEPE-SLIYKDALVLHKVLLETRRDLE 122 (124)
T ss_dssp HHHHHHSCTT-SHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHCCCC-CHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999988 9999999999999999998864
|
| >3k2j_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo01D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.4e-22 Score=208.96 Aligned_cols=106 Identities=26% Similarity=0.447 Sum_probs=100.8
Q ss_pred chhhHHHHHHHHHHHHcCCC------CCCCCCCCCCCCCCCccccccCccchhhHHhhhcCCCCCCHHHHHHHHHHHHHH
Q psy9598 1530 PFNWKNECREVLETLWVCPD------SEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHN 1603 (1915)
Q Consensus 1530 ~~~~~~~~~~ll~~l~~~~~------s~~F~~pv~~~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~Dv~lif~N 1603 (1915)
...+..+|++|++.|.++.+ ++||+.||+...+||||++|++||||+||++||+++.|.++++|..||+|||.|
T Consensus 15 ~~kl~~~~~~l~~~l~~~~d~~g~~~s~~F~~pv~~~~~PdY~~iIk~PMdL~tI~~kL~~~~Y~s~~ef~~Dv~Lif~N 94 (130)
T 3k2j_A 15 TENLYFQSMQLYDTVRSCRNNQGQLIAEPFYHLPSKKKYPDYYQQIKMPISLQQIRTKLKNQEYETLDHLECDLNLMFEN 94 (130)
T ss_dssp HHHHHHHHHHHHHHHHTCBCSSSCBTTGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhcccCCCccHhhcCCCChhhCccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 45788999999999998766 999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy9598 1604 SRNYNQNKRSKIYIMTTRLSEFAEEHLRRLTVR 1636 (1915)
Q Consensus 1604 a~~yN~~~~s~i~~~a~~l~~~f~~~~~~~~~~ 1636 (1915)
|++||+++ |.||.+|..|+++|+++|+++...
T Consensus 95 a~~yN~~~-s~i~~~A~~L~~~f~~~~~~l~~~ 126 (130)
T 3k2j_A 95 AKRYNVPN-SAIYKRVLKLQQVMQAKKKELARR 126 (130)
T ss_dssp HHHHSCTT-SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCC-CHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999988 999999999999999999998753
|
| >3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP, crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST, bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens} SCOP: a.29.2.1 PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A* 1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1.8e-22 Score=206.37 Aligned_cols=108 Identities=35% Similarity=0.607 Sum_probs=101.7
Q ss_pred CCchhhHHHHHHHHHHHHc-CCCCCCCCCCCCCC--CCCCccccccCccchhhHHhhhcCCCCCCHHHHHHHHHHHHHHh
Q psy9598 1528 KRPFNWKNECREVLETLWV-CPDSEPFRKPVDKL--DHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNS 1604 (1915)
Q Consensus 1528 ~~~~~~~~~~~~ll~~l~~-~~~s~~F~~pv~~~--~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~Dv~lif~Na 1604 (1915)
..+.++.+.|..+|..|++ ++.++||+.||+.. ++||||++|++||||+||++||++|.|.++++|..||+|||.||
T Consensus 7 ~~~~el~~~l~~~l~~l~~~~~~s~~F~~pv~~~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na 86 (119)
T 3p1f_A 7 FKPEELRQALMPTLEALYRQDPESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQEPWQYVDDVWLMFNNA 86 (119)
T ss_dssp CCHHHHHHHHHHHHHHHHTCTTTTGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCCchhcCCCCchhccCCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 4567889999999999988 67999999999966 89999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy9598 1605 RNYNQNKRSKIYIMTTRLSEFAEEHLRRLTVR 1636 (1915)
Q Consensus 1605 ~~yN~~~~s~i~~~a~~l~~~f~~~~~~~~~~ 1636 (1915)
+.||+++ |.+|.+|..|+++|++.++++...
T Consensus 87 ~~yN~~~-s~i~~~A~~L~~~f~~~~~~~~~~ 117 (119)
T 3p1f_A 87 WLYNRKT-SRVYKFCSKLAEVFEQEIDPVMQS 117 (119)
T ss_dssp HHHSCTT-SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCC-CHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999987 999999999999999999998753
|
| >2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.35A {Homo sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A* 3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A* 3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A* 2nxb_A ... | Back alignment and structure |
|---|
Probab=99.87 E-value=1.4e-22 Score=208.60 Aligned_cols=106 Identities=32% Similarity=0.568 Sum_probs=99.2
Q ss_pred CCchhhHHHHHHHHHHHHcCCCCCCCCCCCCC--CCCCCccccccCccchhhHHhhhcCCCCCCHHHHHHHHHHHHHHhh
Q psy9598 1528 KRPFNWKNECREVLETLWVCPDSEPFRKPVDK--LDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSR 1605 (1915)
Q Consensus 1528 ~~~~~~~~~~~~ll~~l~~~~~s~~F~~pv~~--~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~Dv~lif~Na~ 1605 (1915)
.....++..|..||+.|++++.++||+.|||. .++||||+||++||||+||++||++|.|.++++|..||+|||+||+
T Consensus 17 r~~~~l~~~~~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~ 96 (127)
T 2oss_A 17 RQTNQLQYLLRVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWNAQECIQDFNTMFTNCY 96 (127)
T ss_dssp CCCHHHHHHHHTHHHHHHTSTTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHhCccchhhcCCCChhhccCccHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 34566788899999999999999999999995 5899999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy9598 1606 NYNQNKRSKIYIMTTRLSEFAEEHLRRLT 1634 (1915)
Q Consensus 1606 ~yN~~~~s~i~~~a~~l~~~f~~~~~~~~ 1634 (1915)
+||+++ |.||.+|..|+++|+++++++.
T Consensus 97 ~yN~~~-s~i~~~A~~L~~~f~~~~~~lp 124 (127)
T 2oss_A 97 IYNKPG-DDIVLMAEALEKLFLQKINELP 124 (127)
T ss_dssp HHSCTT-CHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHCCCC-CHHHHHHHHHHHHHHHHHHHCC
Confidence 999988 9999999999999999998764
|
| >3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent small and homeotic disks prote homolog, lysine N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.4e-22 Score=209.25 Aligned_cols=107 Identities=21% Similarity=0.276 Sum_probs=101.6
Q ss_pred hhhHHHHHHHHHHHHcCCC------CCCCCCCCCCCCCCCccccccCccchhhHHhhhcCCCCCCHHHHHHHHHHHHHHh
Q psy9598 1531 FNWKNECREVLETLWVCPD------SEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNS 1604 (1915)
Q Consensus 1531 ~~~~~~~~~ll~~l~~~~~------s~~F~~pv~~~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~Dv~lif~Na 1604 (1915)
..+++.|..|++.|+++.+ ++||+.||++..+||||++|++||||+||++||.+|.|.++++|..||+|||.||
T Consensus 8 ~~l~~~~~~i~~~l~~~~d~~g~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na 87 (126)
T 3mqm_A 8 ARLAQIFKEICDGIISYKDSSRQALAAPLLNLPPKKKNADYYEKISDPLDLITIEKQILTGYYKTVEAFDADMLKVFRNA 87 (126)
T ss_dssp HHHHHHHHHHHHHHHHCBCTTCCBTTGGGSSCCCGGGCTTHHHHCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcCCCChhHHhcCCCCcccCCCHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 4677899999999998765 8999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy9598 1605 RNYNQNKRSKIYIMTTRLSEFAEEHLRRLTVRWN 1638 (1915)
Q Consensus 1605 ~~yN~~~~s~i~~~a~~l~~~f~~~~~~~~~~~~ 1638 (1915)
++||+++ |.+|.+|..|+++|+++++++...+.
T Consensus 88 ~~yN~~~-s~~~~~A~~L~~~f~~~~~~~~~~l~ 120 (126)
T 3mqm_A 88 EKYYGRK-SPVGRDVCRLRKAYYNARHEASAQID 120 (126)
T ss_dssp HHHHCTT-SHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988 99999999999999999999987654
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.87 E-value=4.9e-20 Score=224.20 Aligned_cols=281 Identities=12% Similarity=0.060 Sum_probs=203.7
Q ss_pred EEEcCCCCE-EEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeC-CCcEEEEECCCCce-EEEeec
Q psy9598 482 VLFDKLGEV-IVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTV-DKTIRIWNLQTLAP-ISVLVG 558 (1915)
Q Consensus 482 vafspdg~~-LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~-DgtIrVWDl~tg~~-~~~l~~ 558 (1915)
..|++++.+ +++++.++.|.+||+.+++.+..+..+...+ +++|+|+|++|++++. ++.|.+||+.++.. ...+..
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~ 81 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQE 81 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEE
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEeccc
Confidence 346665555 6777889999999999999999888777777 9999999997766665 88999999999988 777777
Q ss_pred CCCCeEEEEeccCccCCCcEEEEEeCCC---eEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEE
Q psy9598 559 HQGIITGVNFCPLEVNGFNYLASTSTDG---CIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLAT 635 (1915)
Q Consensus 559 h~~~V~sl~fsp~~~~d~~~L~sgs~Dg---tI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Las 635 (1915)
+...+.+++|+|+ +.+|+++..++ .|.+||+.++..+..+.. ...+.+++|+|+|++|++
T Consensus 82 ~~~~~~~~~~s~d----g~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~-------------~~~~~~~~~spdg~~l~~ 144 (331)
T 3u4y_A 82 GQSSMADVDITPD----DQFAVTVTGLNHPFNMQSYSFLKNKFISTIPI-------------PYDAVGIAISPNGNGLIL 144 (331)
T ss_dssp CSSCCCCEEECTT----SSEEEECCCSSSSCEEEEEETTTTEEEEEEEC-------------CTTEEEEEECTTSSCEEE
T ss_pred CCCCccceEECCC----CCEEEEecCCCCcccEEEEECCCCCeEEEEEC-------------CCCccceEECCCCCEEEE
Confidence 7777666999994 47888555553 999999988764333221 244689999999986555
Q ss_pred E-eCCCe-EEEEEecCCCCCcee-EEeccCCCCeeEEEEcCCCCEEEE-EeCCCcEEEEEccCCce---EEeeecccccC
Q psy9598 636 G-SGDHH-VRVYKMDGVDSPLGI-LEVEEHSDKVDSIQWSHSHLRFVS-GSRDGTALIWYYKCSQW---RFIRLDMNTCL 708 (1915)
Q Consensus 636 g-s~Dg~-I~IwDl~~~~~~~~i-~~l~~h~~~V~sl~fspdg~~L~s-gs~DG~I~IWDl~~~~~---~~~~~~~~~~~ 708 (1915)
+ ..++. |.+|++......... .....+...+.+++|+|+|++|++ +..++.|.+||+.+++. ....
T Consensus 145 ~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~------- 217 (331)
T 3u4y_A 145 IDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAV------- 217 (331)
T ss_dssp EEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEE-------
T ss_pred EecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeec-------
Confidence 4 55588 999999643221111 112234556899999999996554 55789999999988774 2211
Q ss_pred CCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCce--EEEeeCC----CC---CeEEEEEccCCCCE
Q psy9598 709 PHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDL--VQVLKGH----TN---EVFVLESHPFDSRV 779 (1915)
Q Consensus 709 ~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~--i~~l~gH----~~---~V~sl~~sp~dg~~ 779 (1915)
.....+..++|+|+|++|+++...++.|.+||+.+++. +..+..+ .. .+..++|+| ++.+
T Consensus 218 ----------~~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~ 286 (331)
T 3u4y_A 218 ----------GTNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNK-TETK 286 (331)
T ss_dssp ----------ECSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECT-TSSE
T ss_pred ----------cCCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECC-CCCE
Confidence 01244567999999998888765578899999999887 4444433 22 235589999 8887
Q ss_pred EEEE-ecCceEEEEECCCCc
Q psy9598 780 LLSA-GHDGLIIIWDILSSK 798 (1915)
Q Consensus 780 LaSg-s~DG~I~IWdl~s~~ 798 (1915)
|+++ ..++.|.|||+....
T Consensus 287 l~v~~~~~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 287 LFISANISRELKVFTISGKV 306 (331)
T ss_dssp EEEEETTTTEEEEEETTSCE
T ss_pred EEEecCCCCcEEEEEecCCc
Confidence 7555 456799999997654
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.87 E-value=5.1e-20 Score=224.30 Aligned_cols=305 Identities=10% Similarity=0.094 Sum_probs=204.5
Q ss_pred EEEEEECCCcEEEEECC-CCc--EEEEEeCCCCCEEEEEEeCCCCEEEEEeCC-CcEEEEECC--CCce--EEEeecCCC
Q psy9598 490 VIVTGADDLLIKLWRAR-DGK--LLATLRGCSGEISDIAIDNRNILLAAGTVD-KTIRIWNLQ--TLAP--ISVLVGHQG 561 (1915)
Q Consensus 490 ~LaTGs~Dg~I~IWd~~-tg~--~~~~l~gH~~~I~~Lafspdg~~LaSgs~D-gtIrVWDl~--tg~~--~~~l~~h~~ 561 (1915)
++++++.|+.|.+|++. ++. .+..+ .|...+.+++|+|+|++|++++.+ +.|.+|++. ++.. +..+..+.
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~- 84 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG- 84 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeeeE-ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-
Confidence 34444779999999995 443 33333 477889999999999999988876 999999997 5553 34454444
Q ss_pred CeEEEEeccCccCCCcEEEEEe-CCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEe-CC
Q psy9598 562 IITGVNFCPLEVNGFNYLASTS-TDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGS-GD 639 (1915)
Q Consensus 562 ~V~sl~fsp~~~~d~~~L~sgs-~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs-~D 639 (1915)
.+.+++|+|+ +.+|++++ .++.|.+||+..+....... .+ .....+.+++|+|+|.+|++++ .+
T Consensus 85 ~~~~~~~s~d----g~~l~~~~~~~~~i~~~d~~~~~~~~~~~---------~~-~~~~~~~~~~~s~dg~~l~~~~~~~ 150 (343)
T 1ri6_A 85 SLTHISTDHQ----GQFVFVGSYNAGNVSVTRLEDGLPVGVVD---------VV-EGLDGCHSANISPDNRTLWVPALKQ 150 (343)
T ss_dssp CCSEEEECTT----SSEEEEEETTTTEEEEEEEETTEEEEEEE---------EE-CCCTTBCCCEECTTSSEEEEEEGGG
T ss_pred CCcEEEEcCC----CCEEEEEecCCCeEEEEECCCCccccccc---------cc-cCCCCceEEEECCCCCEEEEecCCC
Confidence 7899999994 46665555 58999999995221100100 01 1224578899999999888877 89
Q ss_pred CeEEEEEecCCCCCceeE--Eecc-CCCCeeEEEEcCCCCEEEEEe-CCCcEEEEEccC--CceEEeeecccccCCCCcc
Q psy9598 640 HHVRVYKMDGVDSPLGIL--EVEE-HSDKVDSIQWSHSHLRFVSGS-RDGTALIWYYKC--SQWRFIRLDMNTCLPHTKE 713 (1915)
Q Consensus 640 g~I~IwDl~~~~~~~~i~--~l~~-h~~~V~sl~fspdg~~L~sgs-~DG~I~IWDl~~--~~~~~~~~~~~~~~~~~~~ 713 (1915)
+.|.+||+........+. .+.. ....+.+++|+|+|.+|++++ .++.|.+|++.. +........ ...+
T Consensus 151 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~--~~~~---- 224 (343)
T 1ri6_A 151 DRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTL--DMMP---- 224 (343)
T ss_dssp TEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEE--ECSC----
T ss_pred CEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeec--cccC----
Confidence 999999995422222222 2222 345788999999999776554 889999999953 432211100 0000
Q ss_pred ccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECC--C--CceEEEeeCCCCCeEEEEEccCCCCEEEEEe-cCce
Q psy9598 714 TSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAF--N--GDLVQVLKGHTNEVFVLESHPFDSRVLLSAG-HDGL 788 (1915)
Q Consensus 714 ~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~--t--g~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs-~DG~ 788 (1915)
........+..++|+|+|.+|+++...++.|.+|++. + ...+..+..+.. +.+++|+| ++++|++++ .++.
T Consensus 225 --~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~-dg~~l~~~~~~~~~ 300 (343)
T 1ri6_A 225 --ENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDH-SGKYLIAAGQKSHH 300 (343)
T ss_dssp --TTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECT-TSSEEEEECTTTCE
T ss_pred --ccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECC-CCCEEEEecCCCCe
Confidence 0011234677899999999998777558999999998 3 345556665555 88999999 888888777 6899
Q ss_pred EEEEECC--CCccccceeeeeeecCCCCcceEEEEEcCCC
Q psy9598 789 IIIWDIL--SSKQRGYKWFHNIVEGQGEGALFDGKWSPDG 826 (1915)
Q Consensus 789 I~IWdl~--s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg 826 (1915)
|.||++. ++....+..+. ......+++|.++.
T Consensus 301 v~v~~~d~~~g~~~~~~~~~------~g~~p~~i~~~~~~ 334 (343)
T 1ri6_A 301 ISVYEIVGEQGLLHEKGRYA------VGQGPMWVVVNAHE 334 (343)
T ss_dssp EEEEEEETTTTEEEEEEEEE------CSSSCCEEEEEEEC
T ss_pred EEEEEEcCCCceeeEccccc------cCCCCeeEEEEccc
Confidence 9999554 55432122222 11345566776643
|
| >3fkm_X Signaling protein; bromodomain, malaria, structural genomics, structural genomi consortium, SGC; 2.50A {Plasmodium falciparum 3D7} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.8e-22 Score=215.78 Aligned_cols=107 Identities=25% Similarity=0.458 Sum_probs=99.4
Q ss_pred cCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCC--CCCCCccccccCccchhhHHhhhcCCCCCCHHHHHHHHHHHHHHh
Q psy9598 1527 LKRPFNWKNECREVLETLWVCPDSEPFRKPVDK--LDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNS 1604 (1915)
Q Consensus 1527 ~~~~~~~~~~~~~ll~~l~~~~~s~~F~~pv~~--~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~Dv~lif~Na 1604 (1915)
......|+..|..||..|++++.++||+.||+. .++||||+||++||||+||++||.++.|.++.+|..||+|||.||
T Consensus 16 ~p~~~~~~~~~~~il~~L~~~~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~Dv~Lif~Na 95 (166)
T 3fkm_X 16 FQGNKQWYLLANQLILSLSKYEGGHIFEKLVDAKKQNCPDYYDVIKNPMSFSCIKTKLKKGQYAYPSEFVKDVQLIFDNC 95 (166)
T ss_dssp -CTTHHHHHHHHHHHHHHTTSTTGGGGSSCCC-----CCCGGGCCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHHhCCCChhhcCCCChhhccCCCHHHhcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHH
Confidence 355678999999999999999999999999994 479999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy9598 1605 RNYNQNKRSKIYIMTTRLSEFAEEHLRRLT 1634 (1915)
Q Consensus 1605 ~~yN~~~~s~i~~~a~~l~~~f~~~~~~~~ 1634 (1915)
++||+++ |.||.+|..|+++|+++|.++.
T Consensus 96 ~~yN~~~-s~i~~~A~~L~~~f~~~l~~~~ 124 (166)
T 3fkm_X 96 SLYNTSN-SVVAITGKNIETYFNNQLIVMG 124 (166)
T ss_dssp HHSSCTT-SHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHCCCC-CHHHHHHHHHHHHHHHHHHHcc
Confidence 9999988 9999999999999999998865
|
| >3iu5_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.4e-22 Score=205.92 Aligned_cols=105 Identities=22% Similarity=0.387 Sum_probs=99.1
Q ss_pred chhhHHHHHHHHHHHHcCCC------CCCCCCCCCCCCCCCccccccCccchhhHHhhhcCCCCCCHHHHHHHHHHHHHH
Q psy9598 1530 PFNWKNECREVLETLWVCPD------SEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHN 1603 (1915)
Q Consensus 1530 ~~~~~~~~~~ll~~l~~~~~------s~~F~~pv~~~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~Dv~lif~N 1603 (1915)
.....+.|..||+.|+++++ ++||..||+..++||||++|++||||+||++||++|.|.++++|..||+|||.|
T Consensus 3 ~~~~~~~c~~il~~l~~~~d~~g~~~s~~F~~p~~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~N 82 (116)
T 3iu5_A 3 TVDPIAVCHELYNTIRDYKDEQGRLLCELFIRAPKRRNQPDYYEVVSQPIDLMKIQQKLKMEEYDDVNLLTADFQLLFNN 82 (116)
T ss_dssp SCCHHHHHHHHHHHHHHCBCTTCCBGGGGGSSCCCGGGCHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhhccCCCeeeHHhcCCCCcccCCCHHHHhCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 34567889999999998855 899999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy9598 1604 SRNYNQNKRSKIYIMTTRLSEFAEEHLRRLTV 1635 (1915)
Q Consensus 1604 a~~yN~~~~s~i~~~a~~l~~~f~~~~~~~~~ 1635 (1915)
|++||+++ |.+|.+|..|+++|+++++++..
T Consensus 83 a~~yN~~~-s~~~~~A~~L~~~f~~~~~~l~~ 113 (116)
T 3iu5_A 83 AKSYYKPD-SPEYKAACKLWDLYLRTRNEFVQ 113 (116)
T ss_dssp HHHHSCTT-SHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHCCCC-CHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999988 99999999999999999999863
|
| >2yyn_A Transcription intermediary factor 1-alpha; bromo domain, structural genomics, NPPSFA; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.5e-22 Score=207.95 Aligned_cols=107 Identities=34% Similarity=0.520 Sum_probs=100.6
Q ss_pred CCchhhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCccccccCccchhhHHhhhcC--CCCCCHHHHHHHHHHHHHHhh
Q psy9598 1528 KRPFNWKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRG--DNYESPIDFVKDVKRVFHNSR 1605 (1915)
Q Consensus 1528 ~~~~~~~~~~~~ll~~l~~~~~s~~F~~pv~~~~~pdY~~iIk~Pmdl~tI~~kl~~--~~Y~s~~ef~~Dv~lif~Na~ 1605 (1915)
.+.+...+.|..||..|++++.++||+.||+. ++||||+||++||||+||++||++ +.|.++++|..||+|||.||+
T Consensus 16 ~m~p~~~~~c~~il~~L~~~~~s~~F~~Pv~~-~~pdY~~iIk~PmDL~tI~~kL~~~~~~Y~s~~ef~~Dv~Lif~Na~ 94 (135)
T 2yyn_A 16 KLTPIDKRKCERLLLFLYCHEMSLAFQDPVPL-TVPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIFQNCA 94 (135)
T ss_dssp CCCHHHHHHHHHHHHHHHTSGGGGGGSSCCCT-TSTTHHHHCSSCCCHHHHHHHHHSSSCCCSSHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhCccchhhcCCCcc-cCCCHHHHcCCCCCHHHHHHHHhccccCCCCHHHHHHHHHHHHHHHH
Confidence 45566778999999999999999999999998 799999999999999999999998 589999999999999999999
Q ss_pred hhcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy9598 1606 NYNQNKRSKIYIMTTRLSEFAEEHLRRLTVR 1636 (1915)
Q Consensus 1606 ~yN~~~~s~i~~~a~~l~~~f~~~~~~~~~~ 1636 (1915)
+||.++ |.||.+|..|+++|+++++++...
T Consensus 95 ~yN~~~-s~i~~~A~~L~~~f~~~~~~~~~~ 124 (135)
T 2yyn_A 95 EFNEPD-SEVANAGIKLENYFEELLKNLYPE 124 (135)
T ss_dssp HHSCTT-SHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred HHCCCC-CHHHHHHHHHHHHHHHHHHHhccc
Confidence 999988 999999999999999999998754
|
| >3rcw_A Bromodomain-containing protein 1; transcription, structural genomics, structural consortium, SGC; 2.21A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=5.9e-22 Score=207.10 Aligned_cols=106 Identities=25% Similarity=0.370 Sum_probs=101.5
Q ss_pred hhhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCccccccCccchhhHHhhhcCCCCCCHHHHHHHHHHHHHHhhhhcCC
Q psy9598 1531 FNWKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQN 1610 (1915)
Q Consensus 1531 ~~~~~~~~~ll~~l~~~~~s~~F~~pv~~~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~Dv~lif~Na~~yN~~ 1610 (1915)
..+...|..||+.|++++.++||..||+..++||||++|++||||+||++||++|.|.++++|..||+|||.||+.||++
T Consensus 12 ~~l~~~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~ 91 (135)
T 3rcw_A 12 TPLTVLLRSVLDQLQDKDPARIFAQPVSLKEVPDYLDHIKHPMDFATMRKRLEAQGYKNLHEFEEDFDLIIDNCMKYNAR 91 (135)
T ss_dssp CHHHHHHHHHHHHHHHTCTTCSSSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCT
T ss_pred hHHHHHHHHHHHHHHhCCcchhhcCCCChhhcCCHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 45889999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9598 1611 KRSKIYIMTTRLSEFAEEHLRRLTVRW 1637 (1915)
Q Consensus 1611 ~~s~i~~~a~~l~~~f~~~~~~~~~~~ 1637 (1915)
+ |.+|.+|..|++.|++.++.+....
T Consensus 92 ~-s~~~~~A~~L~~~~~~~~~~~~~~~ 117 (135)
T 3rcw_A 92 D-TVFYRAAVRLRDQGGVVLRQARREV 117 (135)
T ss_dssp T-SHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8 9999999999999999999887654
|
| >2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.89A {Homo sapiens} PDB: 2yem_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=2.2e-22 Score=208.03 Aligned_cols=102 Identities=27% Similarity=0.506 Sum_probs=95.3
Q ss_pred hhHHHHHHHHHHHHcCCC---CCCCCCCCCCC--CCCCccccccCccchhhHHhhhcCCCCCCHHHHHHHHHHHHHHhhh
Q psy9598 1532 NWKNECREVLETLWVCPD---SEPFRKPVDKL--DHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRN 1606 (1915)
Q Consensus 1532 ~~~~~~~~ll~~l~~~~~---s~~F~~pv~~~--~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~Dv~lif~Na~~ 1606 (1915)
...+.|..||+.|+.+++ ++||+.|||.. ++||||+||++||||+||++||.+|.|.++++|..||+|||.||++
T Consensus 22 ~~l~~c~~il~~L~~~~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~ 101 (130)
T 2ouo_A 22 EQLKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLEAREYRDAQEFGADVRLMFSNCYK 101 (130)
T ss_dssp HHHHHHHHHHHHHTSGGGHHHHGGGSSCCCTTSTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcchhHHHhcCCCChhhccCCcHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 445789999999999875 89999999964 6999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy9598 1607 YNQNKRSKIYIMTTRLSEFAEEHLRRLT 1634 (1915)
Q Consensus 1607 yN~~~~s~i~~~a~~l~~~f~~~~~~~~ 1634 (1915)
||+++ |.||.+|..|+++|+++|+++.
T Consensus 102 yN~~~-s~i~~~A~~L~~~f~~~~~~lp 128 (130)
T 2ouo_A 102 YNPPD-HEVVAMARKLQDVFEMRFAKMP 128 (130)
T ss_dssp HSCTT-SHHHHHHHHHHHHHHHHHHTSC
T ss_pred HcCCC-CHHHHHHHHHHHHHHHHHHHCC
Confidence 99988 9999999999999999998764
|
| >3hme_A Bromodomain-containing protein 9; BRD9, bromodomain containing 9 isoform 1, LAVS3040, rhabdomyosarcoma antigen MU-RMS-40.8; 2.23A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=5.4e-22 Score=203.28 Aligned_cols=103 Identities=21% Similarity=0.344 Sum_probs=98.6
Q ss_pred hhhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCccccccCccchhhHHhhhcCCCCCCHHHHHHHHHHHHHHhhhhcCC
Q psy9598 1531 FNWKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQN 1610 (1915)
Q Consensus 1531 ~~~~~~~~~ll~~l~~~~~s~~F~~pv~~~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~Dv~lif~Na~~yN~~ 1610 (1915)
..+...|..||+.|++++.++||..||+...+||||++|++||||+||++||.+|.|.++++|..||+|||.||+.||++
T Consensus 12 ~p~~~~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~ 91 (123)
T 3hme_A 12 TPIQQLLEHFLRQLQRKDPHGFFAFPVTDAIAPGYSMIIKHPMDFGTMKDKIVANEYKSVTEFKADFKLMCDNAMTYNRP 91 (123)
T ss_dssp CHHHHHHHHHHHHHHTTCTTCSSSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCT
T ss_pred CHHHHHHHHHHHHHHhCCccHhhcCCCChhhccCHHHHCCCCCCHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHH
Q psy9598 1611 KRSKIYIMTTRLSEFAEEHLRRLT 1634 (1915)
Q Consensus 1611 ~~s~i~~~a~~l~~~f~~~~~~~~ 1634 (1915)
+ |.+|.+|..|++.|++.|.+..
T Consensus 92 ~-s~~~~~A~~L~~~~~~~~~~~~ 114 (123)
T 3hme_A 92 D-TVYYKLAKKILHAGFKMMSKER 114 (123)
T ss_dssp T-SHHHHHHHHHHHHHHHHTCHHH
T ss_pred C-CHHHHHHHHHHHHHHHHHHHHH
Confidence 8 9999999999999999987654
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.86 E-value=4.4e-20 Score=251.02 Aligned_cols=306 Identities=11% Similarity=0.089 Sum_probs=224.9
Q ss_pred CCCEEEEEEeCCCCEEEEEeC-CC-----cEEEEECCCCceEEEeecCCCC------------------------eEEEE
Q psy9598 518 SGEISDIAIDNRNILLAAGTV-DK-----TIRIWNLQTLAPISVLVGHQGI------------------------ITGVN 567 (1915)
Q Consensus 518 ~~~I~~Lafspdg~~LaSgs~-Dg-----tIrVWDl~tg~~~~~l~~h~~~------------------------V~sl~ 567 (1915)
...|.+++|+|||++|++++. |+ .|++||+.+++....+..+... |.+++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 456999999999999999998 88 8999999999888777655433 88999
Q ss_pred eccCccCCCcEEEEEeCCCeEEEEecccCc--cccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEE
Q psy9598 568 FCPLEVNGFNYLASTSTDGCIGFWKYKLDI--DISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVY 645 (1915)
Q Consensus 568 fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~--~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~Iw 645 (1915)
|+|+ +++|++++. +.|.+||+.++. ... .+..+...+.+++|||+|++|++++. +.|++|
T Consensus 116 ~SpD----g~~l~~~~~-~~i~~~d~~~~~~~~~~------------~l~~~~~~~~~~~~SPDG~~la~~~~-~~i~~~ 177 (741)
T 2ecf_A 116 WSPD----AQRLLFPLG-GELYLYDLKQEGKAAVR------------QLTHGEGFATDAKLSPKGGFVSFIRG-RNLWVI 177 (741)
T ss_dssp ECTT----SSEEEEEET-TEEEEEESSSCSTTSCC------------BCCCSSSCEEEEEECTTSSEEEEEET-TEEEEE
T ss_pred ECCC----CCEEEEEeC-CcEEEEECCCCCcceEE------------EcccCCcccccccCCCCCCEEEEEeC-CcEEEE
Confidence 9994 588888886 999999998762 111 12234467999999999999998874 699999
Q ss_pred EecCCCCCceeEEeccCCCC----------------eeEEEEcCCCCEEEEEeCCC------------------------
Q psy9598 646 KMDGVDSPLGILEVEEHSDK----------------VDSIQWSHSHLRFVSGSRDG------------------------ 685 (1915)
Q Consensus 646 Dl~~~~~~~~i~~l~~h~~~----------------V~sl~fspdg~~L~sgs~DG------------------------ 685 (1915)
|+.+. ........+... +.+++|+|+|++|++++.|+
T Consensus 178 d~~~g---~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~ 254 (741)
T 2ecf_A 178 DLASG---RQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYP 254 (741)
T ss_dssp ETTTT---EEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECC
T ss_pred ecCCC---CEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecC
Confidence 98532 222222222222 47899999999999988776
Q ss_pred ---------cEEEEEccC-CceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEe----cCCeEEEEEC
Q psy9598 686 ---------TALIWYYKC-SQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAIN----FNFQIKIWDA 751 (1915)
Q Consensus 686 ---------~I~IWDl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~----~Dg~I~vwD~ 751 (1915)
.|.+||+.+ +....+.. ...+...+..++| |||++|++++. .+..|++||+
T Consensus 255 ~~g~~~~~~~l~~~d~~~~~~~~~~~~--------------~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~ 319 (741)
T 2ecf_A 255 AAGDANVQVKLGVISPAEQAQTQWIDL--------------GKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTL 319 (741)
T ss_dssp BTTSCCCEEEEEEECSSTTCCCEEECC--------------CSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEET
T ss_pred CCCCCCCeeEEEEEECCCCCceEEecC--------------CCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEEC
Confidence 788888877 65332110 0135677899999 99999998764 2468999999
Q ss_pred CCCceEEEeeCCCC----CeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEE-EEcCCC
Q psy9598 752 FNGDLVQVLKGHTN----EVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDG-KWSPDG 826 (1915)
Q Consensus 752 ~tg~~i~~l~gH~~----~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~v-afSpdg 826 (1915)
.++++...+..|.. .+.+++|+| +++++++++.||.+.||.+..... ...+. .+...|.++ +|+|||
T Consensus 320 ~~g~~~~~~~~~~~~~~~~~~~~~~sp-dg~~~~~~~~~g~~~l~~~~~~~~--~~~l~-----~~~~~v~~~~~~s~dg 391 (741)
T 2ecf_A 320 ASNQQRVLAHETSPTWVPLHNSLRFLD-DGSILWSSERTGFQHLYRIDSKGK--AAALT-----HGNWSVDELLAVDEKA 391 (741)
T ss_dssp TTCCEEEEEEEECSSCCCCCSCCEECT-TSCEEEEECTTSSCEEEEECSSSC--EEESC-----CSSSCEEEEEEEETTT
T ss_pred CCCceEEEEEcCCCCcCCcCCceEECC-CCeEEEEecCCCccEEEEEcCCCC--eeeee-----ecceEEEeEeEEeCCC
Confidence 99998888776653 456889999 888999999999888887753211 22221 234567777 599999
Q ss_pred CEEEEEe-CCC--eEEEEeCCC-CcccccCCC-----ceeecCCCCeeee
Q psy9598 827 TTCALTD-SYG--HLLVYGLGG-FKRPQNIPR-----ELFFHTDYRTLNR 867 (1915)
Q Consensus 827 ~~Lasg~-~dG--~I~Iwdl~s-~~~~~~l~~-----~~~F~~d~~~Lv~ 867 (1915)
+.|++++ .++ .+.||.+.. +.....+.. .+.|++|++.++.
T Consensus 392 ~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~~~~~~~~~~spdg~~l~~ 441 (741)
T 2ecf_A 392 GLAYFRAGIESARESQIYAVPLQGGQPQRLSKAPGMHSASFARNASVYVD 441 (741)
T ss_dssp TEEEEEECSSCTTCBEEEEEETTCCCCEECCCSCSEEEEEECTTSSEEEE
T ss_pred CEEEEEEeCCCCceEEEEEEEcCCCCeeecccCCCceEEEECCCCCEEEE
Confidence 9876554 444 889998864 443444432 5789999998873
|
| >3jvl_A Bromodomain-containing protein 4; alpha helical, N-acetyl lysine binding domain, signaling protein; 1.20A {Mus musculus} PDB: 3jvm_A 2dww_A 2i8n_A 3oni_A* 2dvv_A* 2e3k_A* 2g4a_A 3s92_A* 2oo1_A* 2e7n_A 2wp1_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=2.3e-22 Score=205.81 Aligned_cols=104 Identities=27% Similarity=0.478 Sum_probs=97.9
Q ss_pred chhhHHHHHHHHHHHHcCCC---CCCCCCCCCCCC--CCCccccccCccchhhHHhhhcCCCCCCHHHHHHHHHHHHHHh
Q psy9598 1530 PFNWKNECREVLETLWVCPD---SEPFRKPVDKLD--HPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNS 1604 (1915)
Q Consensus 1530 ~~~~~~~~~~ll~~l~~~~~---s~~F~~pv~~~~--~pdY~~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~Dv~lif~Na 1604 (1915)
.....+.|..||..|+.++. ++||+.||+... +||||++|++||||+||++||++|.|.++++|..||+|||.||
T Consensus 7 ~~~~l~~c~~il~~l~~~~~~~~a~~F~~pvd~~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na 86 (120)
T 3jvl_A 7 ISEQLKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLESREYRDAQEFGADVRLMFSNC 86 (120)
T ss_dssp SCHHHHHHHHHHHHHTSGGGHHHHGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCcCccccchhcCCCCchhcCCCCHHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHH
Confidence 34567889999999999887 899999999776 9999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy9598 1605 RNYNQNKRSKIYIMTTRLSEFAEEHLRRLT 1634 (1915)
Q Consensus 1605 ~~yN~~~~s~i~~~a~~l~~~f~~~~~~~~ 1634 (1915)
++||+++ |.+|.+|..|+++|+++++++.
T Consensus 87 ~~yN~~~-s~~~~~A~~L~~~f~~~~~~~p 115 (120)
T 3jvl_A 87 YKYNPPD-HEVVAMARKLQDVFEMRFAKMP 115 (120)
T ss_dssp HHHSCTT-SHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHCCCC-CHHHHHHHHHHHHHHHHHHHCc
Confidence 9999988 9999999999999999998875
|
| >2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=3.5e-22 Score=219.41 Aligned_cols=105 Identities=31% Similarity=0.500 Sum_probs=99.3
Q ss_pred CchhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCccccCCCcCCHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhhc
Q psy9598 114 RPFNWKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYN 193 (1915)
Q Consensus 114 ~~~~~~~~~~~il~~l~~~~~~~~F~~pvd~~~~pdY~~iIk~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~Lif~N~~~yN 193 (1915)
.....++.|..||+.|++++.++||++|||...+||||+||++||||+||++||+++.|.++++|.+||+|||.||++||
T Consensus 69 l~~~~~~~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~~I~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN 148 (174)
T 2ri7_A 69 LTEKDYEGLKRVLRSLQAHKMAWPFLEPVDPNDAPDYYGVIKEPMDLATMEERVQRRYYEKLTEFVADMTKIFDNCRYYN 148 (174)
T ss_dssp CCHHHHHHHHHHHHHHHTSGGGTTTSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCCBHHHHHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHHHhhhhhhhhhcCCCcccCCchHHHhCCcCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 34567788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy9598 194 QNKRSKIYIMTTRLSEFAEEHLRRLT 219 (1915)
Q Consensus 194 ~~~~s~i~~~a~~l~~~f~~~~~~~~ 219 (1915)
+++ |.||.+|..|+++|+++|+.++
T Consensus 149 ~~~-s~~~~~A~~L~~~f~~~~~~~~ 173 (174)
T 2ri7_A 149 PSD-SPFYQCAEVLESFFVQKLKGFK 173 (174)
T ss_dssp CTT-SHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCC-CHHHHHHHHHHHHHHHHHHhcc
Confidence 976 9999999999999999987653
|
| >3tlp_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.13A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=7.3e-22 Score=210.29 Aligned_cols=104 Identities=28% Similarity=0.483 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHhcCCC-------CCCCCCCCCCCCCCCccccCCCcCCHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhh
Q psy9598 119 KNECREVLETLWVCPD-------SEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRN 191 (1915)
Q Consensus 119 ~~~~~~il~~l~~~~~-------~~~F~~pvd~~~~pdY~~iIk~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~Lif~N~~~ 191 (1915)
+++|+.||+.|++... ++||+.||+...+||||+||++||||+||++||+++.|.++++|..||+|||.||++
T Consensus 26 ~~~~k~ll~~l~~~~~~~~~~~~~~~F~~~~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~ 105 (150)
T 3tlp_A 26 KQRMKILFNVVLEAREPGSGRRLCDLFMVKPSKKDYPDYYKIILEPMDLKIIEHNIRNDKYAGEEGMIEDMKLMFRNARH 105 (150)
T ss_dssp HHHHHHHHHHHHHCBCTTTCCBGGGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCcccHHhcCCCchhhCcCHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 5778888888887655 899999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9598 192 YNQNKRSKIYIMTTRLSEFAEEHLRRLTVRWN 223 (1915)
Q Consensus 192 yN~~~~s~i~~~a~~l~~~f~~~~~~~~~~~~ 223 (1915)
||+++ |.||.+|..|+++|+++|+++.....
T Consensus 106 yN~~~-s~i~~~A~~L~~~f~~~~~~l~~~pd 136 (150)
T 3tlp_A 106 YNEEG-SQVYNDAHILEKLLKEKRKELGPLPD 136 (150)
T ss_dssp HSCTT-SHHHHHHHHHHHHHHHHHHHHCCC--
T ss_pred HCCCC-CHHHHHHHHHHHHHHHHHHHccCCCC
Confidence 99976 99999999999999999999876554
|
| >3dai_A ATPase family AAA domain-containing protein 2; ancca, AAA+ nuclear coregulator cancer-associated Pro2000 protein, two AAA DOMA containing protein; 1.95A {Homo sapiens} PDB: 3lxj_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.5e-21 Score=202.18 Aligned_cols=99 Identities=23% Similarity=0.359 Sum_probs=93.5
Q ss_pred hHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCccccCCCcCCHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhhcCCC
Q psy9598 117 NWKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQNK 196 (1915)
Q Consensus 117 ~~~~~~~~il~~l~~~~~~~~F~~pvd~~~~pdY~~iIk~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~Lif~N~~~yN~~~ 196 (1915)
.++..|..+|..|++++.++||..|||...+||||+||++||||+||++||++|.|.++++|..||+|||.||++||+++
T Consensus 10 ~l~~~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~ 89 (130)
T 3dai_A 10 ELRIFLRNVTHRLAIDKRFRVFTKPVDPDEVPDYVTVIKQPMDLSSVISKIDLHKYLTVKDYLRDIDLICSNALEYNPDR 89 (130)
T ss_dssp HHHHHHHHHHHHHHTSGGGGGGSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHCCSS
T ss_pred HHHHHHHHHHHHHHcCCccHhhcCCCChhhcCCHHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 57888999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred CCHH----HHHHHHHHHHHHHHHH
Q psy9598 197 RSKI----YIMTTRLSEFAEEHLR 216 (1915)
Q Consensus 197 ~s~i----~~~a~~l~~~f~~~~~ 216 (1915)
|++ +.+|..|+..|...++
T Consensus 90 -s~~~~~i~~~A~~L~~~~~~~i~ 112 (130)
T 3dai_A 90 -DPGDRLIRHRACALRDTAYAIIK 112 (130)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -ChhHHHHHHHHHHHHHHHHHHHH
Confidence 766 7888999988888886
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.85 E-value=9.3e-20 Score=216.10 Aligned_cols=257 Identities=14% Similarity=0.085 Sum_probs=195.3
Q ss_pred EEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCC-CceEEEeecCC-CCeEEEEecc
Q psy9598 493 TGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQT-LAPISVLVGHQ-GIITGVNFCP 570 (1915)
Q Consensus 493 TGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~t-g~~~~~l~~h~-~~V~sl~fsp 570 (1915)
+++.|+.|++||+.+++... +..|...|.+++|+|+|++|++++ ++.|++||+.+ +.....+.+|. ..|.+++|+|
T Consensus 17 ~~~~~~~i~~~d~~~~~~~~-~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp 94 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMRV-VWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISP 94 (297)
T ss_dssp -CCCCEEEEEEETTTTEEEE-EEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECT
T ss_pred CCCcceeEEEEeCCCCceee-eccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECC
Confidence 34678999999999888764 556889999999999999999987 78999999999 88877776664 7889999999
Q ss_pred CccCCCcEEEEEe--CCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEE-EEeCCCeEEEEEe
Q psy9598 571 LEVNGFNYLASTS--TDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLA-TGSGDHHVRVYKM 647 (1915)
Q Consensus 571 ~~~~d~~~L~sgs--~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~La-sgs~Dg~I~IwDl 647 (1915)
+ +.+|++++ .++.+.||.+......... + .+...+.+++|+|+|.+|+ +++.++.+.||++
T Consensus 95 d----g~~l~~~~~~~~~~~~l~~~~~~~~~~~~-----------~-~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~ 158 (297)
T 2ojh_A 95 D----GALYAISDKVEFGKSAIYLLPSTGGTPRL-----------M-TKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSM 158 (297)
T ss_dssp T----SSEEEEEECTTTSSCEEEEEETTCCCCEE-----------C-CSSSSEEEEEECTTSSEEEEEEEETTEEEEEEE
T ss_pred C----CCEEEEEEeCCCCcceEEEEECCCCceEE-----------e-ecCCCccceEECCCCCEEEEEECCCCceEEEEE
Confidence 4 48888888 4456666655432111111 1 1123488899999999877 7888999999998
Q ss_pred cCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEe-CCCcEEEEEccC-CceEEeeecccccCCCCccccccccccccEE
Q psy9598 648 DGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGS-RDGTALIWYYKC-SQWRFIRLDMNTCLPHTKETSDETNKKIKVT 725 (1915)
Q Consensus 648 ~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs-~DG~I~IWDl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~ 725 (1915)
+... .....+..|...+.+++|+|+|.+|++++ .++.+.||++.. +.... ....+...+.
T Consensus 159 ~~~~--~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~----------------~~~~~~~~~~ 220 (297)
T 2ojh_A 159 DIDS--GVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVE----------------RITDSAYGDW 220 (297)
T ss_dssp ETTT--CCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEE----------------ECCCCSEEEE
T ss_pred ECCC--CcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcE----------------EEecCCcccC
Confidence 5322 23455677888999999999999887766 599999998863 22111 1122446788
Q ss_pred EEEECCCCCEEEEEEecC-----------CeEEEEECCCCce--EEEeeCCCCCeEEEEEccCCCCEEEEEecCc
Q psy9598 726 MVAWDASDRWVITAINFN-----------FQIKIWDAFNGDL--VQVLKGHTNEVFVLESHPFDSRVLLSAGHDG 787 (1915)
Q Consensus 726 ~va~spdg~~L~t~s~~D-----------g~I~vwD~~tg~~--i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG 787 (1915)
+++|+|+|.+|++++. + +.|++||+.+++. +..+.+|...|.+++|+| ++.+|++++.+.
T Consensus 221 ~~~~s~dg~~l~~~~~-~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~ 293 (297)
T 2ojh_A 221 FPHPSPSGDKVVFVSY-DADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSP-DGDEFAYVRYFP 293 (297)
T ss_dssp EEEECTTSSEEEEEEE-ETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCT-TSSEEEEEEECC
T ss_pred CeEECCCCCEEEEEEc-CCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECC-CCCEEEEEEecc
Confidence 9999999999998876 4 5799999998876 444558888999999999 889888887653
|
| >3uv4_A Second bromodomain of human transcription initiat TFIID subunit 1 (TAF1); structural genomics consortium, SGC; 1.89A {Homo sapiens} PDB: 3hmh_A | Back alignment and structure |
|---|
Probab=99.84 E-value=3.1e-21 Score=205.40 Aligned_cols=104 Identities=29% Similarity=0.475 Sum_probs=93.5
Q ss_pred HHHHHHHHHH-HHcCCCCCCCCCCCCCCCCCCccccccCccchhhHHhhhcCCCCCCHHHHHHHHHHHHHHhhhhcCCCC
Q psy9598 1534 KNECREVLET-LWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQNKR 1612 (1915)
Q Consensus 1534 ~~~~~~ll~~-l~~~~~s~~F~~pv~~~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~Dv~lif~Na~~yN~~~~ 1612 (1915)
...+..|+.. |+.++.++||+.||++..+||||+||++||||+||++||.++.|.++++|..||+|||.||++||+++
T Consensus 31 ~~iL~~i~~~kl~~~~~s~~F~~PVd~~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~Na~~yN~~~- 109 (158)
T 3uv4_A 31 SFILDNIVTQKMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPE- 109 (158)
T ss_dssp HHHHHHHHHHTTTTSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHCTT-
T ss_pred HHHHHHHHHHHHHcCCCchhhcCcCChhhcccHHHHcCCccCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCC-
Confidence 3344444433 55688999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy9598 1613 SKIYIMTTRLSEFAEEHLRRLTVRWN 1638 (1915)
Q Consensus 1613 s~i~~~a~~l~~~f~~~~~~~~~~~~ 1638 (1915)
|.||.+|..|+++|++.++++...+.
T Consensus 110 s~i~~~A~~L~~~~~~~l~e~~~~l~ 135 (158)
T 3uv4_A 110 SQYTKTAQEIVNVCYQTLTEYDEHLT 135 (158)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999887654
|
| >3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A | Back alignment and structure |
|---|
Probab=99.84 E-value=3e-21 Score=213.52 Aligned_cols=105 Identities=34% Similarity=0.534 Sum_probs=98.9
Q ss_pred CCchhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCccccCCCcCCHHHHHHHhcC--CCCCCHHHHHHHHHHHHHHHh
Q psy9598 113 KRPFNWKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRG--DNYESPIDFVKDVKRVFHNSR 190 (1915)
Q Consensus 113 ~~~~~~~~~~~~il~~l~~~~~~~~F~~pvd~~~~pdY~~iIk~Pmdl~ti~~kl~~--~~Y~~~~~f~~D~~Lif~N~~ 190 (1915)
.....+++.|+.||..|++++.+++|.+||+. ++||||+||++||||+||++||++ +.|.++++|.+||+|||.||+
T Consensus 77 ~l~~~~~~~c~~il~~l~~~~~s~~F~~Pv~~-~~pdY~~iIk~PmdL~tI~~kl~~~~~~Y~s~~ef~~Dv~li~~Na~ 155 (184)
T 3o36_A 77 KLTPIDKRKCERLLLFLYCHEMSLAFQDPVPL-TVPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIFQNCA 155 (184)
T ss_dssp CCCHHHHHHHHHHHHHHHHSTTCHHHHSCCCT-TSTTHHHHCSSCCCHHHHHHHHHSTTCSCCSHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHhchhhhhhcccccc-CCCchhhhcCCCCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHH
Confidence 35567899999999999999999999999995 589999999999999999999998 789999999999999999999
Q ss_pred hhcCCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy9598 191 NYNQNKRSKIYIMTTRLSEFAEEHLRRLT 219 (1915)
Q Consensus 191 ~yN~~~~s~i~~~a~~l~~~f~~~~~~~~ 219 (1915)
+||+++ |.||.+|..|+++|+++|++++
T Consensus 156 ~yN~~~-s~v~~~a~~L~~~f~~~~~~~~ 183 (184)
T 3o36_A 156 EFNEPD-SEVANAGIKLENYFEELLKNLY 183 (184)
T ss_dssp HHSCTT-CHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHCCCC-CHHHHHHHHHHHHHHHHHHHhC
Confidence 999976 9999999999999999999874
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.7e-18 Score=212.13 Aligned_cols=272 Identities=9% Similarity=-0.038 Sum_probs=209.1
Q ss_pred CCcEEEEEEcCCCCEEEEEEC-------CCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEE-EEeCCCcEEEEEC
Q psy9598 476 LSAVFCVLFDKLGEVIVTGAD-------DLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLA-AGTVDKTIRIWNL 547 (1915)
Q Consensus 476 ~~~V~~vafspdg~~LaTGs~-------Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~La-Sgs~DgtIrVWDl 547 (1915)
...+.+++|+|+|++|++++. ++.|.+||+.+++.+..+... ..+.+++|+++|++|+ ++..++.|.+||+
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~ 118 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND-LKPFGATINNTTQTLWFGNTVNSAVTAIDA 118 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES-SCCCSEEEETTTTEEEEEETTTTEEEEEET
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC-CCcceEEECCCCCEEEEEecCCCEEEEEeC
Confidence 357889999999999998874 568999999999998888743 4578899999999555 4455799999999
Q ss_pred CCCceEEEeecCCCC---------eEEEEeccCccCCCcEEEEEe--CCCeEEEEecccCccccceeccCccccccccCC
Q psy9598 548 QTLAPISVLVGHQGI---------ITGVNFCPLEVNGFNYLASTS--TDGCIGFWKYKLDIDISKTVFHEPVMFNERIRP 616 (1915)
Q Consensus 548 ~tg~~~~~l~~h~~~---------V~sl~fsp~~~~d~~~L~sgs--~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~ 616 (1915)
.+++.+..+..+... +.+++|+|++ .+|++++ .++.|.+||+.++.....+..
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg----~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~------------ 182 (353)
T 3vgz_A 119 KTGEVKGRLVLDDRKRTEEVRPLQPRELVADDAT----NTVYISGIGKESVIWVVDGGNIKLKTAIQN------------ 182 (353)
T ss_dssp TTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTT----TEEEEEEESSSCEEEEEETTTTEEEEEECC------------
T ss_pred CCCeeEEEEecCCCccccccCCCCCceEEECCCC----CEEEEEecCCCceEEEEcCCCCceEEEecC------------
Confidence 999998888765432 7899999953 5566555 588999999987754333221
Q ss_pred CCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEec----cCCCCeeEEEEcCCCCEEEEEeC-CCcEEEEE
Q psy9598 617 GNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVE----EHSDKVDSIQWSHSHLRFVSGSR-DGTALIWY 691 (1915)
Q Consensus 617 ~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~----~h~~~V~sl~fspdg~~L~sgs~-DG~I~IWD 691 (1915)
+...+.+++|+|+|.+|++++.++.|.+||+.. ...+..+. ++...+.+++|+|+|.+|++++. ++.|.+||
T Consensus 183 ~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~---~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d 259 (353)
T 3vgz_A 183 TGKMSTGLALDSEGKRLYTTNADGELITIDTAD---NKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVD 259 (353)
T ss_dssp CCTTCCCCEEETTTTEEEEECTTSEEEEEETTT---TEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEE
T ss_pred CCCccceEEECCCCCEEEEEcCCCeEEEEECCC---CeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEE
Confidence 123467889999999999999999999999843 23333333 25567889999999997776665 59999999
Q ss_pred ccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCCCeEEEE
Q psy9598 692 YKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLE 771 (1915)
Q Consensus 692 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~ 771 (1915)
+.+++....... .. ...++|+++|.+++++...++.|.+||+.+++.+..+..+. .+.+++
T Consensus 260 ~~~~~~~~~~~~---------------~~---~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~ 320 (353)
T 3vgz_A 260 TRNGNILAKVAA---------------PE---SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPT-HPNSLA 320 (353)
T ss_dssp TTTCCEEEEEEC---------------SS---CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCS-EEEEEE
T ss_pred CCCCcEEEEEEc---------------CC---CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCC-CCCeEE
Confidence 988875442210 01 13589999999888887658999999999999998887654 689999
Q ss_pred EccCCCCEEEEEecCc
Q psy9598 772 SHPFDSRVLLSAGHDG 787 (1915)
Q Consensus 772 ~sp~dg~~LaSgs~DG 787 (1915)
|+| ++++|++++.++
T Consensus 321 ~s~-dg~~l~v~~~~~ 335 (353)
T 3vgz_A 321 LSA-DGKTLYVSVKQK 335 (353)
T ss_dssp ECT-TSCEEEEEEECC
T ss_pred EcC-CCCEEEEEEccc
Confidence 999 888776666553
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.84 E-value=9e-19 Score=213.06 Aligned_cols=288 Identities=10% Similarity=0.029 Sum_probs=200.9
Q ss_pred EEeCCCC-EEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEe-CCCeEEEEecccCcc-ccc
Q psy9598 525 AIDNRNI-LLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTS-TDGCIGFWKYKLDID-ISK 601 (1915)
Q Consensus 525 afspdg~-~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs-~DgtI~iWDl~~~~~-~~~ 601 (1915)
.|..++. .+++++.++.|.+||+.+++.+..+..+...+ +++|+|++ .+|++++ .++.|.+||+.++.. ...
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg----~~l~~~~~~~~~i~~~d~~~~~~~~~~ 78 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDC----SNVVVTSDFCQTLVQIETQLEPPKVVA 78 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSS----CEEEEEESTTCEEEEEECSSSSCEEEE
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCC----CEEEEEeCCCCeEEEEECCCCceeEEe
Confidence 4555544 46777889999999999999988888777777 99999953 6555555 489999999988754 222
Q ss_pred eeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCC---eEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEE
Q psy9598 602 TVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDH---HVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRF 678 (1915)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg---~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L 678 (1915)
.. .+.....+++|+|+|++|+++..++ .|.+||+.. ...+..+. +...+.+++|+|+|++|
T Consensus 79 ~~------------~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~---~~~~~~~~-~~~~~~~~~~spdg~~l 142 (331)
T 3u4y_A 79 IQ------------EGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLK---NKFISTIP-IPYDAVGIAISPNGNGL 142 (331)
T ss_dssp EE------------ECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTT---TEEEEEEE-CCTTEEEEEECTTSSCE
T ss_pred cc------------cCCCCccceEECCCCCEEEEecCCCCcccEEEEECCC---CCeEEEEE-CCCCccceEECCCCCEE
Confidence 21 1223344499999999999666553 899999843 23344443 34457899999999855
Q ss_pred E-EEeCCCc-EEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCce
Q psy9598 679 V-SGSRDGT-ALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDL 756 (1915)
Q Consensus 679 ~-sgs~DG~-I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~ 756 (1915)
+ ++..++. |.+|++.......... .. .......+..++|+|+|++|++++..++.|.+||+.+++.
T Consensus 143 ~~~~~~~~~~i~~~~~~~~g~~~~~~--~~----------~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~ 210 (331)
T 3u4y_A 143 ILIDRSSANTVRRFKIDADGVLFDTG--QE----------FISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPEN 210 (331)
T ss_dssp EEEEETTTTEEEEEEECTTCCEEEEE--EE----------EECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTS
T ss_pred EEEecCCCceEEEEEECCCCcEeecC--Cc----------cccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcc
Confidence 5 4456688 9999987544221110 00 0012344688999999998888776689999999999998
Q ss_pred ---EEEeeCCCCCeEEEEEccCCCCEEEEE-ecCceEEEEECCCCccccceeeeeee--cCCCCcceEEEEEcCCCCEEE
Q psy9598 757 ---VQVLKGHTNEVFVLESHPFDSRVLLSA-GHDGLIIIWDILSSKQRGYKWFHNIV--EGQGEGALFDGKWSPDGTTCA 830 (1915)
Q Consensus 757 ---i~~l~gH~~~V~sl~~sp~dg~~LaSg-s~DG~I~IWdl~s~~~~~~~~~~~~~--~~~~~~~V~~vafSpdg~~La 830 (1915)
+..+..+ ..+..++|+| ++++|+++ ..++.|.+||+.+++...+..+...+ .......+.+++|+|||++|+
T Consensus 211 ~~~~~~~~~~-~~~~~~~~sp-dg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~ 288 (331)
T 3u4y_A 211 ITLLNAVGTN-NLPGTIVVSR-DGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLF 288 (331)
T ss_dssp CEEEEEEECS-SCCCCEEECT-TSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEE
T ss_pred cceeeeccCC-CCCceEEECC-CCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEE
Confidence 8777755 5678899999 88866555 45889999999987663233222111 111112235689999999887
Q ss_pred EEeC-CCeEEEEeCCCCc
Q psy9598 831 LTDS-YGHLLVYGLGGFK 847 (1915)
Q Consensus 831 sg~~-dG~I~Iwdl~s~~ 847 (1915)
+++. ++.|.||++....
T Consensus 289 v~~~~~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 289 ISANISRELKVFTISGKV 306 (331)
T ss_dssp EEETTTTEEEEEETTSCE
T ss_pred EecCCCCcEEEEEecCCc
Confidence 6654 5699999998754
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=3.9e-19 Score=240.38 Aligned_cols=284 Identities=13% Similarity=0.087 Sum_probs=208.4
Q ss_pred CcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCC-----Cc
Q psy9598 477 SAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQT-----LA 551 (1915)
Q Consensus 477 ~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~t-----g~ 551 (1915)
..|.+++|||+ .+|+.++ ++.|++||+.++++.. +..|...+.+++|+|||++||++ .++.|++|++.+ +.
T Consensus 82 ~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~ 157 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLFT-QGGLVGFDMLARKVTY-LFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSR 157 (706)
T ss_dssp CCCEEEEETTT-TEEEEEE-TTEEEEEETTTTEEEE-EECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCC
T ss_pred cCceeEEECCC-CeEEEEE-CCEEEEEECCCCceEE-ccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCC
Confidence 57999999999 6666554 5899999999887654 44577789999999999999985 589999999998 87
Q ss_pred eEEEeecCCCC--------------eEEEEeccCccCCCcEEEEEe---------------------------------C
Q psy9598 552 PISVLVGHQGI--------------ITGVNFCPLEVNGFNYLASTS---------------------------------T 584 (1915)
Q Consensus 552 ~~~~l~~h~~~--------------V~sl~fsp~~~~d~~~L~sgs---------------------------------~ 584 (1915)
.......+... +.++.|+|+ +++|++++ .
T Consensus 158 ~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpD----g~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~ 233 (706)
T 2z3z_A 158 AIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPK----GSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSH 233 (706)
T ss_dssp CEESCSCCBTTEEESSCCGGGCTTCCCSEEECTT----SSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCC
T ss_pred cEEeccCCCCCeEcccchhhhhcCCCceEEECCC----CCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCC
Confidence 76655544443 489999994 58888887 4
Q ss_pred CCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCC-----eEEEEEecCCCCCceeEEe
Q psy9598 585 DGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDH-----HVRVYKMDGVDSPLGILEV 659 (1915)
Q Consensus 585 DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg-----~I~IwDl~~~~~~~~i~~l 659 (1915)
++.|.+||+.++....... ...+...+.+++|+|+|++|++++.++ .|.+||+.+......+..
T Consensus 234 ~~~l~~~d~~~~~~~~~~~----------~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~- 302 (706)
T 2z3z_A 234 HVTVGIYHLATGKTVYLQT----------GEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFV- 302 (706)
T ss_dssp EEEEEEEETTTTEEEECCC----------CSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEE-
T ss_pred eeEEEEEECCCCceEeecc----------CCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEE-
Confidence 5789999998764321110 113456789999999999999988775 899999854311111211
Q ss_pred ccCCC---CeeEEEEcC--CCCEEEEEeCCCcEEEEEcc-CCceEEeeecccccCCCCccccccccccccEEE-EEECCC
Q psy9598 660 EEHSD---KVDSIQWSH--SHLRFVSGSRDGTALIWYYK-CSQWRFIRLDMNTCLPHTKETSDETNKKIKVTM-VAWDAS 732 (1915)
Q Consensus 660 ~~h~~---~V~sl~fsp--dg~~L~sgs~DG~I~IWDl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~-va~spd 732 (1915)
..+.. .+.+++|+| +|.+|++++.||.++||.+. .+..... ...+...+.. ++|+|+
T Consensus 303 ~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~----------------l~~~~~~v~~~~~~spd 366 (706)
T 2z3z_A 303 ETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQ----------------VTKGEWEVTNFAGFDPK 366 (706)
T ss_dssp EECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEE----------------CCCSSSCEEEEEEECTT
T ss_pred ccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEe----------------cCCCCeEEEeeeEEcCC
Confidence 12222 346789999 99999999999999999876 3332111 1123445655 799999
Q ss_pred CCEEEEEEecCC----eEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEEecC----ceEEEEECCCCc
Q psy9598 733 DRWVITAINFNF----QIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHD----GLIIIWDILSSK 798 (1915)
Q Consensus 733 g~~L~t~s~~Dg----~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~D----G~I~IWdl~s~~ 798 (1915)
|..|++++..++ .|+.||+.++. +..+. |...+.+++|+| ++++|+.++.+ +.|++||+.+++
T Consensus 367 g~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l~-~~~~~~~~~~sp-dg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 367 GTRLYFESTEASPLERHFYCIDIKGGK-TKDLT-PESGMHRTQLSP-DGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp SSEEEEEESSSCTTCBEEEEEETTCCC-CEESC-CSSSEEEEEECT-TSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred CCEEEEEecCCCCceEEEEEEEcCCCC-ceecc-CCCceEEEEECC-CCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 999988877454 78888888776 33443 677799999999 88887766543 569999998765
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.8e-19 Score=212.04 Aligned_cols=259 Identities=17% Similarity=0.190 Sum_probs=192.7
Q ss_pred EEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEeccc-CccccceeccCccccccc
Q psy9598 535 AGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKL-DIDISKTVFHEPVMFNER 613 (1915)
Q Consensus 535 Sgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~-~~~~~~~~~~~~~~~~~~ 613 (1915)
+++.|++|++||+.++... .+..|...|.+++|+|+ +.+|++++ ++.|.+||+.+ +........
T Consensus 17 ~~~~~~~i~~~d~~~~~~~-~~~~~~~~v~~~~~spd----g~~l~~~~-~~~i~~~d~~~~~~~~~~~~~--------- 81 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMR-VVWQTPELFEAPNWSPD----GKYLLLNS-EGLLYRLSLAGDPSPEKVDTG--------- 81 (297)
T ss_dssp -CCCCEEEEEEETTTTEEE-EEEEESSCCEEEEECTT----SSEEEEEE-TTEEEEEESSSCCSCEECCCT---------
T ss_pred CCCcceeEEEEeCCCCcee-eeccCCcceEeeEECCC----CCEEEEEc-CCeEEEEeCCCCCCceEeccc---------
Confidence 3467899999999988766 45568999999999994 47888876 78999999988 643211110
Q ss_pred cCCCCCceEEEEECCCCcEEEEEe--CCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEE-EEeCCCcEEEE
Q psy9598 614 IRPGNAHILCSSFSPGGLFLATGS--GDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFV-SGSRDGTALIW 690 (1915)
Q Consensus 614 ~~~~~~~V~~l~fspdg~~Lasgs--~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~-sgs~DG~I~IW 690 (1915)
.+...+.+++|+|+|.+|++++ .++.+.||.++..... ...+..+ ..+.+++|+|+|.+|+ +++.++.+.||
T Consensus 82 --~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~ 156 (297)
T 2ojh_A 82 --FATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT--PRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIY 156 (297)
T ss_dssp --TCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC--CEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEE
T ss_pred --cccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc--eEEeecC-CCccceEECCCCCEEEEEECCCCceEEE
Confidence 1235678899999999999998 4456677766422221 2333333 3489999999999877 78899999999
Q ss_pred EccC--CceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECC-CCceEEEeeCCCCCe
Q psy9598 691 YYKC--SQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAF-NGDLVQVLKGHTNEV 767 (1915)
Q Consensus 691 Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~-tg~~i~~l~gH~~~V 767 (1915)
++.. +... ....+...+.+++|+|+|.+|++++..++.+.||++. .+..+..+..|...+
T Consensus 157 ~~~~~~~~~~-----------------~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 219 (297)
T 2ojh_A 157 SMDIDSGVET-----------------RLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGD 219 (297)
T ss_dssp EEETTTCCEE-----------------ECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEE
T ss_pred EEECCCCcce-----------------EcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCccc
Confidence 8653 2211 1123456789999999999998877558899999886 566778888888899
Q ss_pred EEEEEccCCCCEEEEEecC-----------ceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEEeCCC
Q psy9598 768 FVLESHPFDSRVLLSAGHD-----------GLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYG 836 (1915)
Q Consensus 768 ~sl~~sp~dg~~LaSgs~D-----------G~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~dG 836 (1915)
.+++|+| ++.+|++++.+ +.|++||+.++....+..+. .+.+.+.+++|+|+|.+|++++.+.
T Consensus 220 ~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~-----~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 220 WFPHPSP-SGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLF-----GGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEEEECT-TSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEE-----ESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred CCeEECC-CCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccC-----CCCcccccceECCCCCEEEEEEecc
Confidence 9999999 99998888766 57999999887652222221 2456788999999999998887653
|
| >2dkw_A Hypothetical protein KIAA1240; bromodomain-like, five-helix, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=6.7e-21 Score=196.28 Aligned_cols=96 Identities=27% Similarity=0.380 Sum_probs=90.2
Q ss_pred hhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCccccCCCcCCHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhhcCC
Q psy9598 116 FNWKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQN 195 (1915)
Q Consensus 116 ~~~~~~~~~il~~l~~~~~~~~F~~pvd~~~~pdY~~iIk~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~Lif~N~~~yN~~ 195 (1915)
.+|+..|..||+.|++++.++||.+| +||||+||++||||+||++||.++.|.++++|..||+|||.||++||++
T Consensus 11 ~~L~~~~~~il~~l~~~~~~~~F~~P-----~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~~f~~D~~Li~~Na~~yN~~ 85 (131)
T 2dkw_A 11 RELRLFLRDVTKRLATDKRFNIFSKP-----VSDYLEVIKEPMDLSTVITKIDKHNYLTAKDFLKDIDLICSNALEYNPD 85 (131)
T ss_dssp HHHHHHHHHHHHHHHHSGGGCTTSSC-----CSSCTTSCSSCCCHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHHHHhCccchhhcCc-----CccHHhHcCCCcCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 46889999999999999999999999 8999999999999999999999999999999999999999999999997
Q ss_pred CCCH----HHHHHHHHHHHHHHHHHH
Q psy9598 196 KRSK----IYIMTTRLSEFAEEHLRR 217 (1915)
Q Consensus 196 ~~s~----i~~~a~~l~~~f~~~~~~ 217 (1915)
+ |+ |+.+|..|++.|...++.
T Consensus 86 ~-s~~~~~i~~~A~~L~~~~~~~l~~ 110 (131)
T 2dkw_A 86 K-DPGDKIIRHRACTLKDTAHAIIAA 110 (131)
T ss_dssp S-STTHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-ChhHHHHHHHHHHHHHHHHHHHHH
Confidence 7 74 679999999999988853
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.83 E-value=7.8e-19 Score=213.23 Aligned_cols=294 Identities=12% Similarity=0.038 Sum_probs=209.3
Q ss_pred CEEEEEECCCcEEEEECCCCcEEEEEeCCC-C-CEEEEEEeCCCCEE-EEEeCCCcEEEEECCCCceEEEeec-C----C
Q psy9598 489 EVIVTGADDLLIKLWRARDGKLLATLRGCS-G-EISDIAIDNRNILL-AAGTVDKTIRIWNLQTLAPISVLVG-H----Q 560 (1915)
Q Consensus 489 ~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~-~-~I~~Lafspdg~~L-aSgs~DgtIrVWDl~tg~~~~~l~~-h----~ 560 (1915)
.+|++++.++.|.+||+.+++.+..+.... . .+.+++|+|+|++| ++++.++.|.+||+.+++.+..+.. + .
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~ 81 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV 81 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence 478999999999999999999988886332 2 48899999999766 4555678999999999998877653 2 2
Q ss_pred CCeEEEEeccCccCCCcEEEEEe------------CCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECC
Q psy9598 561 GIITGVNFCPLEVNGFNYLASTS------------TDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSP 628 (1915)
Q Consensus 561 ~~V~sl~fsp~~~~d~~~L~sgs------------~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fsp 628 (1915)
..+.+++|+|+ +.+|++++ .++.|.+||+.++.....+.. ...+.+++|+|
T Consensus 82 ~~~~~~~~s~d----g~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-------------~~~~~~~~~s~ 144 (337)
T 1pby_B 82 KSLFGAALSPD----GKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-------------PRQITMLAWAR 144 (337)
T ss_dssp ECTTCEEECTT----SSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-------------CSSCCCEEECT
T ss_pred ccccceEECCC----CCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-------------CCCcceeEECC
Confidence 26778999984 47787776 579999999987654322221 13467889999
Q ss_pred CCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEE--EEccCCceEEeeecccc
Q psy9598 629 GGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALI--WYYKCSQWRFIRLDMNT 706 (1915)
Q Consensus 629 dg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~I--WDl~~~~~~~~~~~~~~ 706 (1915)
+|++|+++ ++.|.+||+.+ ...+..+..+.. ...+.|+|+|..|+.++..+.... |.....
T Consensus 145 dg~~l~~~--~~~i~~~d~~~---~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~----------- 207 (337)
T 1pby_B 145 DGSKLYGL--GRDLHVMDPEA---GTLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARK----------- 207 (337)
T ss_dssp TSSCEEEE--SSSEEEEETTT---TEEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBT-----------
T ss_pred CCCEEEEe--CCeEEEEECCC---CcEeeeeecccc-CCCceeCCCccEEeeeccCCCceeeeeecccc-----------
Confidence 99988888 68999999843 233333433321 112368899887766655444332 211100
Q ss_pred cCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceE-EEeeCCCCCeEEEEEccCCCCEEEEEec
Q psy9598 707 CLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLV-QVLKGHTNEVFVLESHPFDSRVLLSAGH 785 (1915)
Q Consensus 707 ~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i-~~l~gH~~~V~sl~~sp~dg~~LaSgs~ 785 (1915)
.++..... .. ...|.+||+.+++.. ..+..|...+.+++|+| ++.+|+++
T Consensus 208 ------------------------~~~~~~~~-~~-~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~-- 258 (337)
T 1pby_B 208 ------------------------DIDPADPT-AY-RTGLLTMDLETGEMAMREVRIMDVFYFSTAVNP-AKTRAFGA-- 258 (337)
T ss_dssp ------------------------TSCTTSGG-GE-EEEEEEEETTTCCEEEEEEEECSSCEEEEEECT-TSSEEEEE--
T ss_pred ------------------------cccccccc-cc-ccceEEEeCCCCCceEeecCCCCCceeeEEECC-CCCEEEEe--
Confidence 00000000 00 236889999988774 23446667789999999 89988888
Q ss_pred CceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcccccCC
Q psy9598 786 DGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGGFKRPQNIP 853 (1915)
Q Consensus 786 DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl~s~~~~~~l~ 853 (1915)
++.|.+||+.+++. +..+. ....+.+++|+|+|++|++++.++.|.+|++.+++.+..++
T Consensus 259 ~~~v~~~d~~~~~~--~~~~~------~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~ 318 (337)
T 1pby_B 259 YNVLESFDLEKNAS--IKRVP------LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVD 318 (337)
T ss_dssp ESEEEEEETTTTEE--EEEEE------CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEE
T ss_pred CCeEEEEECCCCcC--cceec------CCCceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEE
Confidence 79999999998776 44443 22457899999999999999999999999999887665554
|
| >3tlp_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.13A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=4.9e-21 Score=203.95 Aligned_cols=101 Identities=29% Similarity=0.514 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHHcCCC-------CCCCCCCCCCCCCCCccccccCccchhhHHhhhcCCCCCCHHHHHHHHHHHHHHhhh
Q psy9598 1534 KNECREVLETLWVCPD-------SEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRN 1606 (1915)
Q Consensus 1534 ~~~~~~ll~~l~~~~~-------s~~F~~pv~~~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~Dv~lif~Na~~ 1606 (1915)
+++|..||..|+++.+ ++||+.||+..++||||+||++||||+||++||++|.|.++++|..||+|||.||+.
T Consensus 26 ~~~~k~ll~~l~~~~~~~~~~~~~~~F~~~~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~ 105 (150)
T 3tlp_A 26 KQRMKILFNVVLEAREPGSGRRLCDLFMVKPSKKDYPDYYKIILEPMDLKIIEHNIRNDKYAGEEGMIEDMKLMFRNARH 105 (150)
T ss_dssp HHHHHHHHHHHHHCBCTTTCCBGGGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCcccHHhcCCCchhhCcCHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 5679999999998665 899999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy9598 1607 YNQNKRSKIYIMTTRLSEFAEEHLRRLTV 1635 (1915)
Q Consensus 1607 yN~~~~s~i~~~a~~l~~~f~~~~~~~~~ 1635 (1915)
||+++ |.||.+|..|+++|+++|+++..
T Consensus 106 yN~~~-s~i~~~A~~L~~~f~~~~~~l~~ 133 (150)
T 3tlp_A 106 YNEEG-SQVYNDAHILEKLLKEKRKELGP 133 (150)
T ss_dssp HSCTT-SHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HCCCC-CHHHHHHHHHHHHHHHHHHHccC
Confidence 99987 99999999999999999999874
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.83 E-value=3.3e-19 Score=241.66 Aligned_cols=314 Identities=14% Similarity=0.090 Sum_probs=215.6
Q ss_pred CEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCCC---CeEEEEeccCccCCCcEEEEEeCC---------Ce
Q psy9598 520 EISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQG---IITGVNFCPLEVNGFNYLASTSTD---------GC 587 (1915)
Q Consensus 520 ~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~---~V~sl~fsp~~~~d~~~L~sgs~D---------gt 587 (1915)
.+.+++|+|||+++++ +.||+|++||+.+++....+.+|.. .|.+++|+|+ +++|++++.+ +.
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpD----g~~l~~~~~~~~~~~~~~~~~ 92 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPD----REYALFSYNVEPIYQHSYTGY 92 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTT----SSEEEEEESCCCCSSSCCCSE
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCC----CCEEEEEecCccceeecceee
Confidence 4678999999998776 7899999999999999888887765 4999999994 5889988764 78
Q ss_pred EEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCC--
Q psy9598 588 IGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDK-- 665 (1915)
Q Consensus 588 I~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~-- 665 (1915)
|.+||+.++.. ..+.. ...+...+.+++|||+|+.|++++. +.|++|++.+.. .......+...
T Consensus 93 i~~~d~~~~~~-~~l~~---------~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~---~~~~~~~~~~~~~ 158 (723)
T 1xfd_A 93 YVLSKIPHGDP-QSLDP---------PEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQ---AIRVVSTGKEGVI 158 (723)
T ss_dssp EEEEESSSCCC-EECCC---------TTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSC---CEEEECCCBTTTE
T ss_pred EEEEECCCCce-EeccC---------CccccccccccEECCCCCEEEEEEC-CeEEEEECCCCc---eEEEecCCCCCce
Confidence 88999988753 11111 1123345788999999999999886 799999985432 22222333332
Q ss_pred ----------------eeEEEEcCCCCEEEEEeCCC----------------------------------cEEEEEccCC
Q psy9598 666 ----------------VDSIQWSHSHLRFVSGSRDG----------------------------------TALIWYYKCS 695 (1915)
Q Consensus 666 ----------------V~sl~fspdg~~L~sgs~DG----------------------------------~I~IWDl~~~ 695 (1915)
+.+++|+|+|++|++++.|+ .|.+||+.++
T Consensus 159 ~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~ 238 (723)
T 1xfd_A 159 YNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGP 238 (723)
T ss_dssp EEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSS
T ss_pred ECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCC
Confidence 37899999999999887653 6778887766
Q ss_pred ceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEec---CCeEEEEECCCCceEEEeeC-CCCCeE---
Q psy9598 696 QWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINF---NFQIKIWDAFNGDLVQVLKG-HTNEVF--- 768 (1915)
Q Consensus 696 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~---Dg~I~vwD~~tg~~i~~l~g-H~~~V~--- 768 (1915)
...... .. ......+...+..++|+|||++|+++... +..|++||+.++++...+.. |.+.+.
T Consensus 239 ~~~~~l-------~~---~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~ 308 (723)
T 1xfd_A 239 THDLEM-------MP---PDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQN 308 (723)
T ss_dssp CCCEEC-------CC---CCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCC
T ss_pred ceeEEe-------eC---CccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccC
Confidence 521110 00 00111235678999999999988776541 35799999999998777654 344443
Q ss_pred -EEEEccCCCCEEEE--EecCc------eEEEEE-CCCCccccceeeeeeecCCCCcceEE-EEEcCCCCEEEEEeCC--
Q psy9598 769 -VLESHPFDSRVLLS--AGHDG------LIIIWD-ILSSKQRGYKWFHNIVEGQGEGALFD-GKWSPDGTTCALTDSY-- 835 (1915)
Q Consensus 769 -sl~~sp~dg~~LaS--gs~DG------~I~IWd-l~s~~~~~~~~~~~~~~~~~~~~V~~-vafSpdg~~Lasg~~d-- 835 (1915)
.++|+| +++.|+. +..+| .|.+|| ..++.......+. .+...+.. ++|+|||+.|++++.+
T Consensus 309 ~~~~~sp-dg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~-----~~~~~~~~~~~~spdg~~l~~~~~~~~ 382 (723)
T 1xfd_A 309 EEPVFSK-DGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSIT-----SGDWDVTKILAYDEKGNKIYFLSTEDL 382 (723)
T ss_dssp CCCEECT-TSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSC-----CSSSCEEEEEEEETTTTEEEEEESSSC
T ss_pred CCceEcC-CCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEee-----cCCeEEEeeeEEcCCCCEEEEEEcCCC
Confidence 789999 8876554 45677 577777 4444400011111 12334444 6999999999877655
Q ss_pred -CeEEEEeCCCCc--ccccC---------CCceeecCCCCeeeec
Q psy9598 836 -GHLLVYGLGGFK--RPQNI---------PRELFFHTDYRTLNRP 868 (1915)
Q Consensus 836 -G~I~Iwdl~s~~--~~~~l---------~~~~~F~~d~~~Lv~~ 868 (1915)
+.+.||.+.... ....+ ...+.|++|++.++..
T Consensus 383 ~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~ 427 (723)
T 1xfd_A 383 PRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLK 427 (723)
T ss_dssp TTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEE
T ss_pred CcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEE
Confidence 788999886422 22222 1257899999887743
|
| >2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=4.3e-21 Score=211.34 Aligned_cols=104 Identities=20% Similarity=0.280 Sum_probs=96.0
Q ss_pred CchhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCccccCC--CcCCHHHHHHHhcCC---CCCCHHHHHHHHHHHHHH
Q psy9598 114 RPFNWKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVI--APMDLGTIREELRGD---NYESPIDFVKDVKRVFHN 188 (1915)
Q Consensus 114 ~~~~~~~~~~~il~~l~~~~~~~~F~~pvd~~~~pdY~~iIk--~Pmdl~ti~~kl~~~---~Y~~~~~f~~D~~Lif~N 188 (1915)
..+..++.|..||..|++|+.+|||++||+ |+||+||+ +||||+||++||+++ .|.++++|++||+|||+|
T Consensus 73 m~~~~~~~c~~iL~~l~~~~~s~pF~~pV~----~~Yy~iIk~~~PMDL~tIk~kL~~~~~~~Y~s~~eF~~Dv~Lif~N 148 (189)
T 2ro1_A 73 LSPANQRKCERVLLALFCHEPCRPLHQLAT----DSTFSLDQPGGTLDLTLIRARLQEKLSPPYSSPQEFAQDVGRMFKQ 148 (189)
T ss_dssp SCHHHHHHHHHHHHHHHHSTTHHHHHSCSC----CTTCSSSCSSCCCCHHHHHHHHHTSSSSCCSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcccCccchhhcCCCC----hhhhccccCCCcccHHHHHHHHhcCCCcccCCHHHHHHHHHHHHHH
Confidence 344556789999999999999999999999 78999998 899999999999999 999999999999999999
Q ss_pred HhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9598 189 SRNYNQNKRSKIYIMTTRLSEFAEEHLRRLTVRWN 223 (1915)
Q Consensus 189 ~~~yN~~~~s~i~~~a~~l~~~f~~~~~~~~~~~~ 223 (1915)
|++||+ + +.+|.+|..|+++|+++|+++....+
T Consensus 149 ~~~yN~-~-s~~~~~a~~L~~~Fe~~~~~~~~~~~ 181 (189)
T 2ro1_A 149 FNKLTE-D-KADVQSIIGLQRFFETRMNEAFGDTK 181 (189)
T ss_dssp HHHHCC-S-SCSSHHHHHHHHHHHHHHHHHTTTSC
T ss_pred HHHHCC-C-CHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 999995 5 88999999999999999999977643
|
| >3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1e-20 Score=212.80 Aligned_cols=108 Identities=28% Similarity=0.480 Sum_probs=101.2
Q ss_pred cCCchhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCccccCCCcCCHHHHHHHhcC---CCCCCHHHHHHHHHHHHHH
Q psy9598 112 LKRPFNWKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRG---DNYESPIDFVKDVKRVFHN 188 (1915)
Q Consensus 112 ~~~~~~~~~~~~~il~~l~~~~~~~~F~~pvd~~~~pdY~~iIk~Pmdl~ti~~kl~~---~~Y~~~~~f~~D~~Lif~N 188 (1915)
....+.+++.|+.||..|++++.++||++||+. .+||||+||++||||+||++||++ +.|.++++|.+||+|||.|
T Consensus 76 ~~ls~~~~~~c~~il~~l~~~~~s~~F~~Pv~~-~~pdY~~iIk~PmdL~tI~~kl~~~~~~~Y~s~~~f~~Dv~li~~N 154 (207)
T 3u5n_A 76 QGLSPVDQRKCERLLLYLYCHELSIEFQEPVPA-SIPNYYKIIKKPMDLSTVKKKLQKKHSQHYQIPDDFVADVRLIFKN 154 (207)
T ss_dssp CSSCHHHHHHHHHHHHHHHTSTTCGGGSSCCCT-TSTTHHHHCSSCCCHHHHHHHHSTTSTTCCSSHHHHHHHHHHHHHH
T ss_pred hcccHHHHHHHHHHHHHHHhccchhhhhccCCh-hhccHhHHhCCccCHHHHHHHHhcccCCCcCCHHHHHHHHHHHHHH
Confidence 345567889999999999999999999999997 799999999999999999999997 7999999999999999999
Q ss_pred HhhhcC-----------------CCCCHHHHHHHHHHHHHHHHHHHHHHh
Q psy9598 189 SRNYNQ-----------------NKRSKIYIMTTRLSEFAEEHLRRLTVR 221 (1915)
Q Consensus 189 ~~~yN~-----------------~~~s~i~~~a~~l~~~f~~~~~~~~~~ 221 (1915)
|++||+ ++ +.|+++|..|+.+|+++|+++...
T Consensus 155 a~~yN~~~s~v~~~A~~l~~~~~~~-s~i~~~a~~L~~~fe~~~~~~~p~ 203 (207)
T 3u5n_A 155 CERFNEMMKVVQVYADTQEINLKAD-SEVAQAGKAVALYFEDKLTEIYSD 203 (207)
T ss_dssp HHHHHHHHHHHC----------CCC-CHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHCCCcchHHHHHHHHHhccccc-CHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999998 66 999999999999999999998664
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.82 E-value=3e-18 Score=208.55 Aligned_cols=292 Identities=12% Similarity=0.097 Sum_probs=198.5
Q ss_pred cCCCeEEEecccC-CceeeeEEecCCCCcEEEEEEcCCCCEEEEEECC-CcEEEEECC--CCc--EEEEEeCCCCCEEEE
Q psy9598 451 PLSRSLMISSHKY-SNLRQHYVNLGHLSAVFCVLFDKLGEVIVTGADD-LLIKLWRAR--DGK--LLATLRGCSGEISDI 524 (1915)
Q Consensus 451 ~~d~~~~i~~~~~-~~~~~~~~l~gH~~~V~~vafspdg~~LaTGs~D-g~I~IWd~~--tg~--~~~~l~gH~~~I~~L 524 (1915)
+.++.+.+|+... ..+..... ..|...+.+++|+|+|++|++++.+ +.|.+|++. ++. .+..+..+. .+.++
T Consensus 12 ~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 89 (343)
T 1ri6_A 12 PESQQIHVWNLNHEGALTLTQV-VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHI 89 (343)
T ss_dssp GGGTEEEEEEECTTSCEEEEEE-EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEE
T ss_pred CCCCeEEEEEECCCCcEEEeee-EecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEE
Confidence 5678888886642 23333333 4678899999999999999999887 999999997 565 445555444 78999
Q ss_pred EEeCCCCEEEEEeC-CCcEEEEECC---CCceEEEeecCCCCeEEEEeccCccCCCcEEEEEe-CCCeEEEEeccc-Ccc
Q psy9598 525 AIDNRNILLAAGTV-DKTIRIWNLQ---TLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTS-TDGCIGFWKYKL-DID 598 (1915)
Q Consensus 525 afspdg~~LaSgs~-DgtIrVWDl~---tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs-~DgtI~iWDl~~-~~~ 598 (1915)
+|+|++++|++++. ++.|.+||+. ++..+..+..+ ..+.+++|+|+ +.+|++++ .++.|.+||+.+ +..
T Consensus 90 ~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~d----g~~l~~~~~~~~~v~~~d~~~~~~~ 164 (343)
T 1ri6_A 90 STDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISPD----NRTLWVPALKQDRICLFTVSDDGHL 164 (343)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECTT----SSEEEEEEGGGTEEEEEEECTTSCE
T ss_pred EEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEECCC----CCEEEEecCCCCEEEEEEecCCCce
Confidence 99999998877665 8899999994 34455555444 45889999994 46667666 899999999986 432
Q ss_pred ccce--eccCccccccccCCCCCceEEEEECCCCcEEEEEe-CCCeEEEEEecCCCC-CceeEEec----cC--CCCeeE
Q psy9598 599 ISKT--VFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGS-GDHHVRVYKMDGVDS-PLGILEVE----EH--SDKVDS 668 (1915)
Q Consensus 599 ~~~~--~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs-~Dg~I~IwDl~~~~~-~~~i~~l~----~h--~~~V~s 668 (1915)
.... ... ......+.+++|+|+|.+|++++ .++.|.+|++..... ......+. ++ ...+.+
T Consensus 165 ~~~~~~~~~---------~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 235 (343)
T 1ri6_A 165 VAQDPAEVT---------TVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAAD 235 (343)
T ss_dssp EEEEEEEEE---------CSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEE
T ss_pred eeecccccc---------cCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccc
Confidence 1111 111 11224678899999999776554 789999999953221 11122221 11 235678
Q ss_pred EEEcCCCCEEE-EEeCCCcEEEEEcc--CCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCe
Q psy9598 669 IQWSHSHLRFV-SGSRDGTALIWYYK--CSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQ 745 (1915)
Q Consensus 669 l~fspdg~~L~-sgs~DG~I~IWDl~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~ 745 (1915)
++|+|+|.+|+ ++..++.|.+||+. ++....... .. ....+..++|+|+|.+|++++..++.
T Consensus 236 i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~--------------~~-~~~~~~~~~~s~dg~~l~~~~~~~~~ 300 (343)
T 1ri6_A 236 IHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGF--------------QP-TETQPRGFNVDHSGKYLIAAGQKSHH 300 (343)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEE--------------EE-CSSSCCCEEECTTSSEEEEECTTTCE
T ss_pred eEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeee--------------ec-CCCccceEEECCCCCEEEEecCCCCe
Confidence 99999998777 45579999999998 333222110 00 11226779999999999998865899
Q ss_pred EEEE--ECCCCce--EEEeeCCCCCeEEEEEcc
Q psy9598 746 IKIW--DAFNGDL--VQVLKGHTNEVFVLESHP 774 (1915)
Q Consensus 746 I~vw--D~~tg~~--i~~l~gH~~~V~sl~~sp 774 (1915)
|.+| |..++.. +..+... ....+++|.+
T Consensus 301 v~v~~~d~~~g~~~~~~~~~~g-~~p~~i~~~~ 332 (343)
T 1ri6_A 301 ISVYEIVGEQGLLHEKGRYAVG-QGPMWVVVNA 332 (343)
T ss_dssp EEEEEEETTTTEEEEEEEEECS-SSCCEEEEEE
T ss_pred EEEEEEcCCCceeeEccccccC-CCCeeEEEEc
Confidence 9999 5556643 3444432 3345666666
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=5.4e-18 Score=207.65 Aligned_cols=286 Identities=10% Similarity=-0.004 Sum_probs=213.3
Q ss_pred CCCEEEEEEeCCCCEEEEEeC-------CCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEE
Q psy9598 518 SGEISDIAIDNRNILLAAGTV-------DKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGF 590 (1915)
Q Consensus 518 ~~~I~~Lafspdg~~LaSgs~-------DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~i 590 (1915)
...+..++|+|++++|++++. ++.|.+||+.+++.+..+... ..+.+++|+|++ ..+++++..++.|.+
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg---~~l~v~~~~~~~v~~ 115 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND-LKPFGATINNTT---QTLWFGNTVNSAVTA 115 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES-SCCCSEEEETTT---TEEEEEETTTTEEEE
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC-CCcceEEECCCC---CEEEEEecCCCEEEE
Confidence 356889999999998888874 568999999999988887643 457889999943 235566667899999
Q ss_pred EecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEe--CCCeEEEEEecCCCCCceeEEeccCCCCeeE
Q psy9598 591 WKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGS--GDHHVRVYKMDGVDSPLGILEVEEHSDKVDS 668 (1915)
Q Consensus 591 WDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs--~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~s 668 (1915)
||+.++..+..+........ .......+.+++|+|+|.+|++++ .++.|.+||+. ....+..+..+...+.+
T Consensus 116 ~d~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~---~~~~~~~~~~~~~~~~~ 189 (353)
T 3vgz_A 116 IDAKTGEVKGRLVLDDRKRT---EEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGG---NIKLKTAIQNTGKMSTG 189 (353)
T ss_dssp EETTTCCEEEEEESCCCCCC---SSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETT---TTEEEEEECCCCTTCCC
T ss_pred EeCCCCeeEEEEecCCCccc---cccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCC---CCceEEEecCCCCccce
Confidence 99998875544433211000 000112378899999999877776 47899999984 33445555556667889
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEE
Q psy9598 669 IQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKI 748 (1915)
Q Consensus 669 l~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~v 748 (1915)
++|+|+|.+|++++.++.|.+||+.+++....... ...++...+..++|+|+|.+|++++..++.|.+
T Consensus 190 ~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~------------~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~ 257 (353)
T 3vgz_A 190 LALDSEGKRLYTTNADGELITIDTADNKILSRKKL------------LDDGKEHFFINISLDTARQRAFITDSKAAEVLV 257 (353)
T ss_dssp CEEETTTTEEEEECTTSEEEEEETTTTEEEEEEEC------------CCSSSCCCEEEEEEETTTTEEEEEESSSSEEEE
T ss_pred EEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEc------------CCCCCCcccceEEECCCCCEEEEEeCCCCEEEE
Confidence 99999999999999999999999998875432211 011234567889999999999888875699999
Q ss_pred EECCCCceEEEeeCCCCCeEEEEEccCCCCEEE-EEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCC
Q psy9598 749 WDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLL-SAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGT 827 (1915)
Q Consensus 749 wD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~La-Sgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~ 827 (1915)
||+.+++.+..+..+.. .+++|+| ++++|+ ++..++.|.+||+.+++. +..+. ....+.+++|+|||+
T Consensus 258 ~d~~~~~~~~~~~~~~~--~~~~~s~-dg~~l~v~~~~~~~v~~~d~~~~~~--~~~~~------~~~~~~~~~~s~dg~ 326 (353)
T 3vgz_A 258 VDTRNGNILAKVAAPES--LAVLFNP-ARNEAYVTHRQAGKVSVIDAKSYKV--VKTFD------TPTHPNSLALSADGK 326 (353)
T ss_dssp EETTTCCEEEEEECSSC--CCEEEET-TTTEEEEEETTTTEEEEEETTTTEE--EEEEE------CCSEEEEEEECTTSC
T ss_pred EECCCCcEEEEEEcCCC--ceEEECC-CCCEEEEEECCCCeEEEEECCCCeE--EEEEe------cCCCCCeEEEcCCCC
Confidence 99999999888875543 5689999 777554 455799999999998876 54443 234678999999999
Q ss_pred EEEEEeCCC
Q psy9598 828 TCALTDSYG 836 (1915)
Q Consensus 828 ~Lasg~~dG 836 (1915)
+|+++...+
T Consensus 327 ~l~v~~~~~ 335 (353)
T 3vgz_A 327 TLYVSVKQK 335 (353)
T ss_dssp EEEEEEECC
T ss_pred EEEEEEccc
Confidence 888776653
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.82 E-value=5e-18 Score=208.35 Aligned_cols=295 Identities=11% Similarity=0.101 Sum_probs=195.8
Q ss_pred EEEEEEC----CCcEEEEEC--CCCcEEE-EEeCCCCCEEEEEEeCCCCEEEEEeC---CCcEEEEECCCCc--eEEEee
Q psy9598 490 VIVTGAD----DLLIKLWRA--RDGKLLA-TLRGCSGEISDIAIDNRNILLAAGTV---DKTIRIWNLQTLA--PISVLV 557 (1915)
Q Consensus 490 ~LaTGs~----Dg~I~IWd~--~tg~~~~-~l~gH~~~I~~Lafspdg~~LaSgs~---DgtIrVWDl~tg~--~~~~l~ 557 (1915)
.|++|+. ++.|.+|.+ .++.+.. ....+...+..|+|+|+|+ |++++. ++.|.+|++.++. .+..+.
T Consensus 4 ~~~vg~y~~~~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~ 82 (347)
T 3hfq_A 4 RILFGTYTKKTSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVV 82 (347)
T ss_dssp EEEEEECCSSSCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEeccCCCCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeee
Confidence 4555543 445666655 4666543 3344567788999999999 555543 6899999997766 444555
Q ss_pred cCCCCeEEEEeccCccCCCcEEEEEe-CCCeEEEEecccCcccccee-ccCccccccccCCCCCceEEEEECCCCcEEEE
Q psy9598 558 GHQGIITGVNFCPLEVNGFNYLASTS-TDGCIGFWKYKLDIDISKTV-FHEPVMFNERIRPGNAHILCSSFSPGGLFLAT 635 (1915)
Q Consensus 558 ~h~~~V~sl~fsp~~~~d~~~L~sgs-~DgtI~iWDl~~~~~~~~~~-~~~~~~~~~~~~~~~~~V~~l~fspdg~~Las 635 (1915)
.+...+..++|+|+ +.+|++++ .+++|.+|++.......... +..... ..........+.+++|+|+|+++++
T Consensus 83 ~~~~~p~~~a~spd----g~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~-~p~~~~~~~~~~~~~~spdg~l~v~ 157 (347)
T 3hfq_A 83 APGTPPAYVAVDEA----RQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGH-GPRPEQDGSHIHYTDLTPDNRLAVI 157 (347)
T ss_dssp EESCCCSEEEEETT----TTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCC-CSSTTCSSCCEEEEEECTTSCEEEE
T ss_pred cCCCCCEEEEECCC----CCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCC-CCCccccCCCceEEEECCCCcEEEE
Confidence 67788999999994 47777777 78999999996432211111 100000 0001112346889999999997777
Q ss_pred EeCCCeEEEEEecCCCCCceeEEeccC-CCCeeEEEEcCCCCEEEE-EeCCCcEEEEEccC--CceEEeeecccccCCCC
Q psy9598 636 GSGDHHVRVYKMDGVDSPLGILEVEEH-SDKVDSIQWSHSHLRFVS-GSRDGTALIWYYKC--SQWRFIRLDMNTCLPHT 711 (1915)
Q Consensus 636 gs~Dg~I~IwDl~~~~~~~~i~~l~~h-~~~V~sl~fspdg~~L~s-gs~DG~I~IWDl~~--~~~~~~~~~~~~~~~~~ 711 (1915)
+..++.|.+|++........+..+..+ ...+..++|+|+|++|++ +..++.|.+|++.. +.+..... .. ..+.
T Consensus 158 ~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~-~~-~~~~- 234 (347)
T 3hfq_A 158 DLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGI-VK-TIPA- 234 (347)
T ss_dssp ETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEE-EE-SSCT-
T ss_pred eCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeee-ee-ecCC-
Confidence 777899999999622222222222222 336788999999996655 56789999999885 44322110 00 0000
Q ss_pred ccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECC---CCceEEEeeCCCCCeEEEEEccCCCCEEEEEec-Cc
Q psy9598 712 KETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAF---NGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGH-DG 787 (1915)
Q Consensus 712 ~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~---tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~-DG 787 (1915)
.......+..++|+|+|++|+++...++.|.+|++. ....+..+..|...+..++|+| ++++|++++. ++
T Consensus 235 -----~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~sp-dg~~l~v~~~~~~ 308 (347)
T 3hfq_A 235 -----DYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDP-TEAFVVVVNQNTD 308 (347)
T ss_dssp -----TCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECT-TSSEEEEEETTTT
T ss_pred -----CCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECC-CCCEEEEEEcCCC
Confidence 011224688999999999997776658999999987 3356667777777789999999 8988887775 48
Q ss_pred eEEEEEC--CCCcc
Q psy9598 788 LIIIWDI--LSSKQ 799 (1915)
Q Consensus 788 ~I~IWdl--~s~~~ 799 (1915)
.|.||++ .+++.
T Consensus 309 ~v~v~~~d~~tg~l 322 (347)
T 3hfq_A 309 NATLYARDLTSGKL 322 (347)
T ss_dssp EEEEEEECTTTCCE
T ss_pred cEEEEEEeCCCCeE
Confidence 9999955 45554
|
| >2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=7.1e-21 Score=209.02 Aligned_cols=105 Identities=31% Similarity=0.497 Sum_probs=99.5
Q ss_pred CCchhhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCccccccCccchhhHHhhhcCCCCCCHHHHHHHHHHHHHHhhhh
Q psy9598 1528 KRPFNWKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNY 1607 (1915)
Q Consensus 1528 ~~~~~~~~~~~~ll~~l~~~~~s~~F~~pv~~~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~Dv~lif~Na~~y 1607 (1915)
.......+.|..||..|++++.++||+.||+...+||||++|++||||+||++||++|.|.++++|..||+|||.||++|
T Consensus 68 ~l~~~~~~~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~~I~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~y 147 (174)
T 2ri7_A 68 PLTEKDYEGLKRVLRSLQAHKMAWPFLEPVDPNDAPDYYGVIKEPMDLATMEERVQRRYYEKLTEFVADMTKIFDNCRYY 147 (174)
T ss_dssp BCCHHHHHHHHHHHHHHHTSGGGTTTSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCCBHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhhhhhhhhhcCCCcccCCchHHHhCCcCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 34556778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy9598 1608 NQNKRSKIYIMTTRLSEFAEEHLRRL 1633 (1915)
Q Consensus 1608 N~~~~s~i~~~a~~l~~~f~~~~~~~ 1633 (1915)
|+++ |.+|.+|..|+++|+++++.+
T Consensus 148 N~~~-s~~~~~A~~L~~~f~~~~~~~ 172 (174)
T 2ri7_A 148 NPSD-SPFYQCAEVLESFFVQKLKGF 172 (174)
T ss_dssp SCTT-SHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCC-CHHHHHHHHHHHHHHHHHHhc
Confidence 9988 999999999999999998765
|
| >3dai_A ATPase family AAA domain-containing protein 2; ancca, AAA+ nuclear coregulator cancer-associated Pro2000 protein, two AAA DOMA containing protein; 1.95A {Homo sapiens} PDB: 3lxj_A | Back alignment and structure |
|---|
Probab=99.82 E-value=2.1e-20 Score=193.71 Aligned_cols=100 Identities=23% Similarity=0.345 Sum_probs=93.8
Q ss_pred hhhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCccccccCccchhhHHhhhcCCCCCCHHHHHHHHHHHHHHhhhhcCC
Q psy9598 1531 FNWKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQN 1610 (1915)
Q Consensus 1531 ~~~~~~~~~ll~~l~~~~~s~~F~~pv~~~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~Dv~lif~Na~~yN~~ 1610 (1915)
..++..|..+|+.|+.++.++||..||+..++||||++|++||||+||++||.+|.|.++++|..||+|||.||+.||++
T Consensus 9 ~~l~~~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~ 88 (130)
T 3dai_A 9 RELRIFLRNVTHRLAIDKRFRVFTKPVDPDEVPDYVTVIKQPMDLSSVISKIDLHKYLTVKDYLRDIDLICSNALEYNPD 88 (130)
T ss_dssp HHHHHHHHHHHHHHHTSGGGGGGSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHHHHcCCccHhhcCCCChhhcCCHHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 35778899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCHH----HHHHHHHHHHHHHHHH
Q psy9598 1611 KRSKI----YIMTTRLSEFAEEHLR 1631 (1915)
Q Consensus 1611 ~~s~i----~~~a~~l~~~f~~~~~ 1631 (1915)
+ |++ |.+|..|++.+...++
T Consensus 89 ~-s~~~~~i~~~A~~L~~~~~~~i~ 112 (130)
T 3dai_A 89 R-DPGDRLIRHRACALRDTAYAIIK 112 (130)
T ss_dssp S-SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-ChhHHHHHHHHHHHHHHHHHHHH
Confidence 7 755 7888999988888886
|
| >3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A | Back alignment and structure |
|---|
Probab=99.80 E-value=4.1e-20 Score=204.41 Aligned_cols=105 Identities=34% Similarity=0.534 Sum_probs=99.2
Q ss_pred CCchhhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCccccccCccchhhHHhhhcC--CCCCCHHHHHHHHHHHHHHhh
Q psy9598 1528 KRPFNWKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRG--DNYESPIDFVKDVKRVFHNSR 1605 (1915)
Q Consensus 1528 ~~~~~~~~~~~~ll~~l~~~~~s~~F~~pv~~~~~pdY~~iIk~Pmdl~tI~~kl~~--~~Y~s~~ef~~Dv~lif~Na~ 1605 (1915)
...+.+++.|+.||..|+.++.++||+.||+. ++|+||+||++||||+||++||++ +.|.++++|..||+|||.||+
T Consensus 77 ~l~~~~~~~c~~il~~l~~~~~s~~F~~Pv~~-~~pdY~~iIk~PmdL~tI~~kl~~~~~~Y~s~~ef~~Dv~li~~Na~ 155 (184)
T 3o36_A 77 KLTPIDKRKCERLLLFLYCHEMSLAFQDPVPL-TVPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIFQNCA 155 (184)
T ss_dssp CCCHHHHHHHHHHHHHHHHSTTCHHHHSCCCT-TSTTHHHHCSSCCCHHHHHHHHHSTTCSCCSHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHhchhhhhhcccccc-CCCchhhhcCCCCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHH
Confidence 45678889999999999999999999999995 589999999999999999999998 789999999999999999999
Q ss_pred hhcCCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy9598 1606 NYNQNKRSKIYIMTTRLSEFAEEHLRRLT 1634 (1915)
Q Consensus 1606 ~yN~~~~s~i~~~a~~l~~~f~~~~~~~~ 1634 (1915)
+||+++ |.||.+|..|+++|+++++++.
T Consensus 156 ~yN~~~-s~v~~~a~~L~~~f~~~~~~~~ 183 (184)
T 3o36_A 156 EFNEPD-SEVANAGIKLENYFEELLKNLY 183 (184)
T ss_dssp HHSCTT-CHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHCCCC-CHHHHHHHHHHHHHHHHHHHhC
Confidence 999987 9999999999999999998864
|
| >2dkw_A Hypothetical protein KIAA1240; bromodomain-like, five-helix, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=4.1e-20 Score=190.44 Aligned_cols=96 Identities=27% Similarity=0.375 Sum_probs=90.3
Q ss_pred hhhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCccccccCccchhhHHhhhcCCCCCCHHHHHHHHHHHHHHhhhhcCC
Q psy9598 1531 FNWKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQN 1610 (1915)
Q Consensus 1531 ~~~~~~~~~ll~~l~~~~~s~~F~~pv~~~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~Dv~lif~Na~~yN~~ 1610 (1915)
..|+..|..||+.|++++.++||..| +||||+||++||||+||++||.+|.|.++++|..||+|||.||++||++
T Consensus 11 ~~L~~~~~~il~~l~~~~~~~~F~~P-----~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~~f~~D~~Li~~Na~~yN~~ 85 (131)
T 2dkw_A 11 RELRLFLRDVTKRLATDKRFNIFSKP-----VSDYLEVIKEPMDLSTVITKIDKHNYLTAKDFLKDIDLICSNALEYNPD 85 (131)
T ss_dssp HHHHHHHHHHHHHHHHSGGGCTTSSC-----CSSCTTSCSSCCCHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHHHHhCccchhhcCc-----CccHHhHcCCCcCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 46788999999999999999999998 8999999999999999999999999999999999999999999999998
Q ss_pred CCC----HHHHHHHHHHHHHHHHHHH
Q psy9598 1611 KRS----KIYIMTTRLSEFAEEHLRR 1632 (1915)
Q Consensus 1611 ~~s----~i~~~a~~l~~~f~~~~~~ 1632 (1915)
+ | .||.+|..|++.|...++.
T Consensus 86 ~-s~~~~~i~~~A~~L~~~~~~~l~~ 110 (131)
T 2dkw_A 86 K-DPGDKIIRHRACTLKDTAHAIIAA 110 (131)
T ss_dssp S-STTHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-ChhHHHHHHHHHHHHHHHHHHHHH
Confidence 8 7 4789999999999988853
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=7.4e-19 Score=238.21 Aligned_cols=342 Identities=11% Similarity=-0.014 Sum_probs=222.5
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCC---CEEEEEEeCCCCEEEEEeC---------CCcEEEEECC
Q psy9598 481 CVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSG---EISDIAIDNRNILLAAGTV---------DKTIRIWNLQ 548 (1915)
Q Consensus 481 ~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~---~I~~Lafspdg~~LaSgs~---------DgtIrVWDl~ 548 (1915)
+++|+|+|.+++++ .|+.|++||+.+++....+.+|.. .|.+++|||||++|++++. ++.|++||+.
T Consensus 20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~ 98 (719)
T 1z68_A 20 FPNWISGQEYLHQS-ADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS 98 (719)
T ss_dssp CCEESSSSEEEEEC-TTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred ccEECCCCeEEEEc-CCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence 68999999665554 699999999999998887776644 4899999999999999876 7899999999
Q ss_pred CCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCC---------C
Q psy9598 549 TLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGN---------A 619 (1915)
Q Consensus 549 tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~---------~ 619 (1915)
+++.+... .....+.+++|+|+ ++.|++++ ++.|++|++.++........... ...+.++. .
T Consensus 99 ~g~~~~~~-~l~~~~~~~~~SPD----G~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~---~~v~~g~~~~v~~ee~~~ 169 (719)
T 1z68_A 99 NGEFVRGN-ELPRPIQYLCWSPV----GSKLAYVY-QNNIYLKQRPGDPPFQITFNGRE---NKIFNGIPDWVYEEEMLA 169 (719)
T ss_dssp TTEECCSS-CCCSSBCCEEECSS----TTCEEEEE-TTEEEEESSTTSCCEECCCCCBT---TTEEESSCCHHHHHHTTC
T ss_pred CCccccce-ecCcccccceECCC----CCEEEEEE-CCeEEEEeCCCCCcEEEecCCCc---CCeEcccccceeeeeccc
Confidence 98762111 11356889999995 47888875 78999999988754321111000 00001111 1
Q ss_pred ceEEEEECCCCcEEEEEeCCC----------------------------------eEEEEEecCCCCC--cee---EEec
Q psy9598 620 HILCSSFSPGGLFLATGSGDH----------------------------------HVRVYKMDGVDSP--LGI---LEVE 660 (1915)
Q Consensus 620 ~V~~l~fspdg~~Lasgs~Dg----------------------------------~I~IwDl~~~~~~--~~i---~~l~ 660 (1915)
...+++|||||++|++++.|. .|++||+.+.... ..+ ..+.
T Consensus 170 ~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~ 249 (719)
T 1z68_A 170 TKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIA 249 (719)
T ss_dssp SSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHH
T ss_pred CcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCC
Confidence 125899999999999987652 7889998532210 011 1234
Q ss_pred cCCCCeeEEEEcCCCCEEEEEeCC----CcEEEEE----ccCCceEEeeecccccCCCCccccccccccccEE-----EE
Q psy9598 661 EHSDKVDSIQWSHSHLRFVSGSRD----GTALIWY----YKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVT-----MV 727 (1915)
Q Consensus 661 ~h~~~V~sl~fspdg~~L~sgs~D----G~I~IWD----l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~-----~v 727 (1915)
+|...+.+++|+|++.+++++... ..|.+|| +.++++..+.. .....+...+. .+
T Consensus 250 ~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~------------~~~~~~~~~~~~~~~~~~ 317 (719)
T 1z68_A 250 SSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQE------------HIEESRTGWAGGFFVSTP 317 (719)
T ss_dssp TSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGE------------EEEECSSSCSSSSSCCCC
T ss_pred CCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEe------------cccccCCceEccccCCcc
Confidence 688889999999998777764433 2488888 66554321110 00011222333 67
Q ss_pred EECCCCCEEEEE-EecCC--eEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEEec-----CceEEEEECCC--C
Q psy9598 728 AWDASDRWVITA-INFNF--QIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGH-----DGLIIIWDILS--S 797 (1915)
Q Consensus 728 a~spdg~~L~t~-s~~Dg--~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~-----DG~I~IWdl~s--~ 797 (1915)
+|+|+|+.|+.. +..+| .|++||+.++. ...+..+...|..+.++ ++..|+..+. ++.+.||.+.. +
T Consensus 318 ~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~~~--d~~~i~~~~~~~~~~~~~~~l~~~~~~~g 394 (719)
T 1z68_A 318 VFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSGKWEAINIFRV--TQDSLFYSSNEFEEYPGRRNIYRISIGSY 394 (719)
T ss_dssp EECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSCSSSCEEEEEEE--CSSEEEEEESCGGGCTTCBEEEEEECSSS
T ss_pred EECCCCCeEEEEEEccCCceEEEEEECCCCc-eEecccCceEEEEEEEE--eCCEEEEEEecCCCCCceEEEEEEeCCCC
Confidence 899999976653 32244 67888887776 45666666678887777 4454554444 48899998764 3
Q ss_pred ccccceeeeeeecCCCCcceEEEEEcCCCCEEEEEe-CC--CeEEEEeCCCCccc
Q psy9598 798 KQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTD-SY--GHLLVYGLGGFKRP 849 (1915)
Q Consensus 798 ~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~-~d--G~I~Iwdl~s~~~~ 849 (1915)
... ...+...+ ..+...+..+.|+|||++|+..+ .. ..+.+|++.++++.
T Consensus 395 ~~~-~~~l~~~~-~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~~~ 447 (719)
T 1z68_A 395 PPS-KKCVTCHL-RKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQEI 447 (719)
T ss_dssp SCC-EEESSTTT-TTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSCCEE
T ss_pred CCC-ceeccCcc-CCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCCCEE
Confidence 210 11111000 11345678899999999877543 22 46889998877643
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.79 E-value=2.2e-16 Score=194.96 Aligned_cols=313 Identities=11% Similarity=0.032 Sum_probs=203.4
Q ss_pred CCCCEEEEEEC----CCcEEEEEC--CCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCC----CcEEEEECCC--Cce-
Q psy9598 486 KLGEVIVTGAD----DLLIKLWRA--RDGKLLATLRGCSGEISDIAIDNRNILLAAGTVD----KTIRIWNLQT--LAP- 552 (1915)
Q Consensus 486 pdg~~LaTGs~----Dg~I~IWd~--~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~D----gtIrVWDl~t--g~~- 552 (1915)
+...++++|+. ++.|.+|.+ .++.+......|...+..|+|+|+|++|++++.+ +.|.+|++.. +..
T Consensus 11 ~~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~ 90 (361)
T 3scy_A 11 DSELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLH 90 (361)
T ss_dssp GGEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEE
T ss_pred CCceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEE
Confidence 33456666653 568888865 5666544332277788899999999999999876 7999998865 443
Q ss_pred -EEEeecCCCCeEEEEeccCccCCCcEEEEE-eCCCeEEEEecccCccccceecc--CccccccccCCCCCceEEEEECC
Q psy9598 553 -ISVLVGHQGIITGVNFCPLEVNGFNYLAST-STDGCIGFWKYKLDIDISKTVFH--EPVMFNERIRPGNAHILCSSFSP 628 (1915)
Q Consensus 553 -~~~l~~h~~~V~sl~fsp~~~~d~~~L~sg-s~DgtI~iWDl~~~~~~~~~~~~--~~~~~~~~~~~~~~~V~~l~fsp 628 (1915)
+..+..+...+..+++ + +.+|+++ ..+++|.+|++.....+...... ...........+...+.+++|+|
T Consensus 91 ~~~~~~~~~~~p~~~~~--d----g~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~sp 164 (361)
T 3scy_A 91 LLNTQKTMGADPCYLTT--N----GKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITP 164 (361)
T ss_dssp EEEEEECSSSCEEEEEE--C----SSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECT
T ss_pred EeeEeccCCCCcEEEEE--C----CCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECC
Confidence 3344445566777777 2 2455554 47899999999765432222110 00000000112234578999999
Q ss_pred CCcEEEEEe-CCCeEEEEEecCCCC------Cce----eEEeccCCCCeeEEEEcCCCCEEEEEe-CCCcEEEEEccCCc
Q psy9598 629 GGLFLATGS-GDHHVRVYKMDGVDS------PLG----ILEVEEHSDKVDSIQWSHSHLRFVSGS-RDGTALIWYYKCSQ 696 (1915)
Q Consensus 629 dg~~Lasgs-~Dg~I~IwDl~~~~~------~~~----i~~l~~h~~~V~sl~fspdg~~L~sgs-~DG~I~IWDl~~~~ 696 (1915)
+|++|++++ .++.|.+|++..... ... ......+...+.+++|+|+|++|++++ .++.|.+|++.++.
T Consensus 165 dg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~ 244 (361)
T 3scy_A 165 DGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGM 244 (361)
T ss_dssp TSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTE
T ss_pred CCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCc
Confidence 999666554 588999999964332 111 111233455678999999999887777 68999999998775
Q ss_pred eEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEec-CCeEEEEECC--CCc--eEEEeeCCCCCeEEEE
Q psy9598 697 WRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINF-NFQIKIWDAF--NGD--LVQVLKGHTNEVFVLE 771 (1915)
Q Consensus 697 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~-Dg~I~vwD~~--tg~--~i~~l~gH~~~V~sl~ 771 (1915)
+...... .....+......++|+|+|++|+++... ++.|.+|++. ++. .+..+.. ...+.+++
T Consensus 245 ~~~~~~~-----------~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~ 312 (361)
T 3scy_A 245 LDEIQTV-----------AADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFI 312 (361)
T ss_dssp EEEEEEE-----------ESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEE
T ss_pred eEEeEEE-----------ecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEE
Confidence 4322110 0011123345789999999999988874 5899999985 455 4445554 55688999
Q ss_pred EccCCCCEEEEEe-cCceEEEEECC--CCccccceeeeeeecCCCCcceEEEEEc
Q psy9598 772 SHPFDSRVLLSAG-HDGLIIIWDIL--SSKQRGYKWFHNIVEGQGEGALFDGKWS 823 (1915)
Q Consensus 772 ~sp~dg~~LaSgs-~DG~I~IWdl~--s~~~~~~~~~~~~~~~~~~~~V~~vafS 823 (1915)
|+| ++++|++++ .++.|.+|.+. +++. .... ...+...+.|++|.
T Consensus 313 ~sp-dg~~l~~~~~~~~~v~v~~~d~~~g~~--~~~~----~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 313 ITP-NGKYLLVACRDTNVIQIFERDQATGLL--TDIK----KDIKVDKPVCLKFV 360 (361)
T ss_dssp ECT-TSCEEEEEETTTTEEEEEEECTTTCCE--EECS----CCEECSSEEEEEEE
T ss_pred ECC-CCCEEEEEECCCCCEEEEEEECCCCcE--eecc----eeeeCCCCeEEEEc
Confidence 999 999888877 67899997554 5544 1111 11123467888875
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.79 E-value=4.9e-18 Score=224.29 Aligned_cols=269 Identities=9% Similarity=0.009 Sum_probs=196.7
Q ss_pred CCCEEEEEEeCCCCEEEEEeC-CCcEEEEECCCCceEEEeecCC-CCeEEEEeccCccCCCcEEEEEeC---CCeEEEEe
Q psy9598 518 SGEISDIAIDNRNILLAAGTV-DKTIRIWNLQTLAPISVLVGHQ-GIITGVNFCPLEVNGFNYLASTST---DGCIGFWK 592 (1915)
Q Consensus 518 ~~~I~~Lafspdg~~LaSgs~-DgtIrVWDl~tg~~~~~l~~h~-~~V~sl~fsp~~~~d~~~L~sgs~---DgtI~iWD 592 (1915)
..+|.+++|+|||+.||+++. ||+++||++.++.... +..|. ..|.+++|+| + .++++++. +....+|.
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~-lt~~~~~~~~~~~~sp----d-~~l~~~~~~~g~~~~~l~~ 94 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVK-LNREPINSVLDPHYGV----G-RVILVRDVSKGAEQHALFK 94 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEE-CCSSCCSEECEECTTC----S-EEEEEEECSTTSCCEEEEE
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEe-eecccccccccccCCC----C-eEEEEeccCCCCcceEEEE
Confidence 457999999999999999887 9999999997666544 44454 6899999998 3 67777765 45567776
Q ss_pred ccc--CccccceeccCccccccccCCCCCceEEEEECCCCc--EEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeE
Q psy9598 593 YKL--DIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGL--FLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDS 668 (1915)
Q Consensus 593 l~~--~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~--~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~s 668 (1915)
+.. ......+ . .. ..+...+|+|+|+ .+++++. +.+.|||+.+. . ...+..+.. .+
T Consensus 95 ~~~~~~g~~~~l--~----------~~-~~~~~~~~s~dg~~~~~~s~~~-~~~~l~d~~~g---~-~~~l~~~~~--~~ 154 (582)
T 3o4h_A 95 VNTSRPGEEQRL--E----------AV-KPMRILSGVDTGEAVVFTGATE-DRVALYALDGG---G-LRELARLPG--FG 154 (582)
T ss_dssp EETTSTTCCEEC--T----------TS-CSBEEEEEEECSSCEEEEEECS-SCEEEEEEETT---E-EEEEEEESS--CE
T ss_pred EeccCCCccccc--c----------CC-CCceeeeeCCCCCeEEEEecCC-CCceEEEccCC---c-EEEeecCCC--ce
Confidence 654 2111111 0 11 1233567777775 3444444 45559999543 2 222223333 88
Q ss_pred EEEcCCCCEEEEEeCC----CcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCC
Q psy9598 669 IQWSHSHLRFVSGSRD----GTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNF 744 (1915)
Q Consensus 669 l~fspdg~~L~sgs~D----G~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg 744 (1915)
++|+|+|++|++++.+ +.|++||+.+++...+ ..+...+..++|+|||++|+++.. ++
T Consensus 155 ~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~l-----------------~~~~~~~~~~~~SpDG~~l~~~~~-~~ 216 (582)
T 3o4h_A 155 FVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVF-----------------DSGEGSFSSASISPGMKVTAGLET-AR 216 (582)
T ss_dssp EEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEEE-----------------CCSSCEEEEEEECTTSCEEEEEEC-SS
T ss_pred EEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceEe-----------------ecCCCccccceECCCCCEEEEccC-CC
Confidence 9999999999988877 7899999988774421 234566799999999999996665 88
Q ss_pred --eEEEEECCCCceEEEeeCCCCCeEEEE--------EccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCC
Q psy9598 745 --QIKIWDAFNGDLVQVLKGHTNEVFVLE--------SHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGE 814 (1915)
Q Consensus 745 --~I~vwD~~tg~~i~~l~gH~~~V~sl~--------~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~ 814 (1915)
.|++||+.+++.. .+.+|...+..++ |+| ++.++++++.||+++||++ ++. .. ...
T Consensus 217 ~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~sp-dg~~~~~~~~~g~~~l~~~--g~~--~~--------~~~ 282 (582)
T 3o4h_A 217 EARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLP-DGRLAVVARREGRSAVFID--GER--VE--------APQ 282 (582)
T ss_dssp CEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECT-TSCEEEEEEETTEEEEEET--TEE--EC--------CCS
T ss_pred eeEEEEEcCCCCcEE-EccCCCcChhhhhhccccceeEcC-CCcEEEEEEcCCcEEEEEE--CCe--ec--------cCC
Confidence 8999999999888 8888888777777 999 8899999999999999999 554 22 123
Q ss_pred cceEEEEEcCCCCEEEEEeCCCe---EEEEeCCC
Q psy9598 815 GALFDGKWSPDGTTCALTDSYGH---LLVYGLGG 845 (1915)
Q Consensus 815 ~~V~~vafSpdg~~Lasg~~dG~---I~Iwdl~s 845 (1915)
+.|.+++|+ +|.++++++.+.. |++|++.+
T Consensus 283 ~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 283 GNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSGE 315 (582)
T ss_dssp SEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCC
T ss_pred CceEEEEec-CCEEEEEEcCCCCCCeEEEEcCCC
Confidence 568899999 9999998887754 77777664
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.79 E-value=3.5e-18 Score=225.65 Aligned_cols=278 Identities=7% Similarity=-0.068 Sum_probs=194.7
Q ss_pred CCcEEEEEEcCCCCEEEEEEC-CCcEEEEECCCCcEEEEEeCCC-CCEEEEEEeCCCCEEEEEeC---CCcEEEEECCC-
Q psy9598 476 LSAVFCVLFDKLGEVIVTGAD-DLLIKLWRARDGKLLATLRGCS-GEISDIAIDNRNILLAAGTV---DKTIRIWNLQT- 549 (1915)
Q Consensus 476 ~~~V~~vafspdg~~LaTGs~-Dg~I~IWd~~tg~~~~~l~gH~-~~I~~Lafspdg~~LaSgs~---DgtIrVWDl~t- 549 (1915)
..+|++++|+|||++||+++. ||++.||++.++.... +..|. ..|.+++|+|| ++|++++. +....||.+..
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~-lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~ 98 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVK-LNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTS 98 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEE-CCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETT
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEe-eecccccccccccCCCC-eEEEEeccCCCCcceEEEEEecc
Confidence 457999999999999999887 9999999996666544 54454 68999999999 78887775 45566655432
Q ss_pred --CceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEEC
Q psy9598 550 --LAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFS 627 (1915)
Q Consensus 550 --g~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs 627 (1915)
+... .+..+. .+..++|+|++ ++.++++++.++. .+||+.++....... +.. .+++|+
T Consensus 99 ~~g~~~-~l~~~~-~~~~~~~s~dg--~~~~~~s~~~~~~-~l~d~~~g~~~~l~~-------------~~~--~~~~~s 158 (582)
T 3o4h_A 99 RPGEEQ-RLEAVK-PMRILSGVDTG--EAVVFTGATEDRV-ALYALDGGGLRELAR-------------LPG--FGFVSD 158 (582)
T ss_dssp STTCCE-ECTTSC-SBEEEEEEECS--SCEEEEEECSSCE-EEEEEETTEEEEEEE-------------ESS--CEEEEE
T ss_pred CCCccc-cccCCC-CceeeeeCCCC--CeEEEEecCCCCc-eEEEccCCcEEEeec-------------CCC--ceEEEC
Confidence 3333 443322 34466888854 3345555555554 499998774321111 111 688999
Q ss_pred CCCcEEEEEeCC----CeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCC--cEEEEEccCCceEEee
Q psy9598 628 PGGLFLATGSGD----HHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDG--TALIWYYKCSQWRFIR 701 (1915)
Q Consensus 628 pdg~~Lasgs~D----g~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG--~I~IWDl~~~~~~~~~ 701 (1915)
|||++|++++.+ +.|++||+.+.. ...+..|.+.+.+++|+|||+.|+++..+| .|++||+.+++.. ..
T Consensus 159 pDG~~la~~~~~~~~~~~i~~~d~~~g~----~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~ 233 (582)
T 3o4h_A 159 IRGDLIAGLGFFGGGRVSLFTSNLSSGG----LRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DL 233 (582)
T ss_dssp EETTEEEEEEEEETTEEEEEEEETTTCC----CEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-EC
T ss_pred CCCCEEEEEEEcCCCCeEEEEEcCCCCC----ceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-Ec
Confidence 999999988877 789999985332 235678889999999999999999888899 8999999988754 21
Q ss_pred ecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEE
Q psy9598 702 LDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLL 781 (1915)
Q Consensus 702 ~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~La 781 (1915)
..... .... .........+|+|||..+++++. ++.+++|++ |+++. .+.+.|.+++|+ ++.+++
T Consensus 234 ~~~~~------~~~~--~~~~~~~~~~~spdg~~~~~~~~-~g~~~l~~~--g~~~~---~~~~~v~~~~~s--dg~~l~ 297 (582)
T 3o4h_A 234 ELPSK------DFSS--YRPTAITWLGYLPDGRLAVVARR-EGRSAVFID--GERVE---APQGNHGRVVLW--RGKLVT 297 (582)
T ss_dssp CCSCS------HHHH--HCCSEEEEEEECTTSCEEEEEEE-TTEEEEEET--TEEEC---CCSSEEEEEEEE--TTEEEE
T ss_pred cCCCc------Chhh--hhhccccceeEcCCCcEEEEEEc-CCcEEEEEE--CCeec---cCCCceEEEEec--CCEEEE
Confidence 10000 0000 00112334559999977777777 999999999 76554 344678899998 688888
Q ss_pred EEecCc---eEEEEECCC
Q psy9598 782 SAGHDG---LIIIWDILS 796 (1915)
Q Consensus 782 Sgs~DG---~I~IWdl~s 796 (1915)
+++.+. .|.+|+..+
T Consensus 298 ~~s~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 298 SHTSLSTPPRIVSLPSGE 315 (582)
T ss_dssp EEEETTEEEEEEEETTCC
T ss_pred EEcCCCCCCeEEEEcCCC
Confidence 888774 466776653
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.79 E-value=2.4e-17 Score=201.32 Aligned_cols=284 Identities=6% Similarity=-0.080 Sum_probs=194.6
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCC-CCEEEEEEeCCCCEEE-EEeCCCcEEEEECCCCceEEEeec
Q psy9598 481 CVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCS-GEISDIAIDNRNILLA-AGTVDKTIRIWNLQTLAPISVLVG 558 (1915)
Q Consensus 481 ~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~-~~I~~Lafspdg~~La-Sgs~DgtIrVWDl~tg~~~~~l~~ 558 (1915)
.+++++++.++++++.++.|.+||+.+++.+..+..+. ..+..++|+|+|++++ +++.++.|.+||+.+++.+..+..
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~ 83 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL 83 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc
Confidence 46788899999999999999999999999998887553 2578999999998664 555789999999999998877763
Q ss_pred CC------CCeEEEEeccCccCCCcEEEEEeCC------------CeEEEEecccCccccceeccCccccccccCCCCCc
Q psy9598 559 HQ------GIITGVNFCPLEVNGFNYLASTSTD------------GCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAH 620 (1915)
Q Consensus 559 h~------~~V~sl~fsp~~~~d~~~L~sgs~D------------gtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (1915)
+. ..+.+++|+|+ +.+|++++.+ +.|.+||+.++......... .+...
T Consensus 84 ~~~~~~~~~~~~~~~~spd----g~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~----------~~~~~ 149 (349)
T 1jmx_B 84 SSVPGEVGRSMYSFAISPD----GKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTF----------PMPRQ 149 (349)
T ss_dssp CCSTTEEEECSSCEEECTT----SSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEE----------ECCSS
T ss_pred ccccccccccccceEECCC----CCEEEEEcccccccccccccCCCeEEEEECCCccccceeeec----------cCCCc
Confidence 32 23789999994 4788888865 89999999875432211110 11235
Q ss_pred eEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCC-C-----------------------CeeEEEEcCCCC
Q psy9598 621 ILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHS-D-----------------------KVDSIQWSHSHL 676 (1915)
Q Consensus 621 V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~-~-----------------------~V~sl~fspdg~ 676 (1915)
+.+++|+|+|. |++++. .|.+||+.+. ..+..+..+. . ...++++++++.
T Consensus 150 ~~~~~~s~dg~-l~~~~~--~i~~~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 223 (349)
T 1jmx_B 150 VYLMRAADDGS-LYVAGP--DIYKMDVKTG---KYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDK 223 (349)
T ss_dssp CCCEEECTTSC-EEEESS--SEEEECTTTC---CEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC----
T ss_pred ccceeECCCCc-EEEccC--cEEEEeCCCC---ceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCc
Confidence 78899999999 665544 4999998432 2333332221 0 234456665442
Q ss_pred EEEEEe-CCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECC-CCCEEEEEEecCCeEEEEECCCC
Q psy9598 677 RFVSGS-RDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDA-SDRWVITAINFNFQIKIWDAFNG 754 (1915)
Q Consensus 677 ~L~sgs-~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~sp-dg~~L~t~s~~Dg~I~vwD~~tg 754 (1915)
...... ....+..+++.++....... ......+..++|+| +|.+|+++ ++.|.+||+.++
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~sp~dg~~l~~~---~~~v~~~d~~~~ 285 (349)
T 1jmx_B 224 QDPATADLLYGYLSVDLKTGKTHTQEF---------------ADLTELYFTGLRSPKDPNQIYGV---LNRLAKYDLKQR 285 (349)
T ss_dssp ---CCCEEEEEEEEEETTTCCEEEEEE---------------EECSSCEEEEEECSSCTTEEEEE---ESEEEEEETTTT
T ss_pred CCccccccceeEEEEeccCCcEEeccc---------------ccCCCcceeeEecCCCCCEEEEE---cCeEEEEECccC
Confidence 110000 00111224444443222111 01334578899999 99999888 579999999999
Q ss_pred ceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeee
Q psy9598 755 DLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFH 806 (1915)
Q Consensus 755 ~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~ 806 (1915)
+.+..+..+ ..+.+++|+| ++.+|++++.++.|.+||+.+++. +..+.
T Consensus 286 ~~~~~~~~~-~~~~~~~~s~-dg~~l~~~~~~~~v~v~d~~~~~~--~~~~~ 333 (349)
T 1jmx_B 286 KLIKAANLD-HTYYCVAFDK-KGDKLYLGGTFNDLAVFNPDTLEK--VKNIK 333 (349)
T ss_dssp EEEEEEECS-SCCCEEEECS-SSSCEEEESBSSEEEEEETTTTEE--EEEEE
T ss_pred eEEEEEcCC-CCccceEECC-CCCEEEEecCCCeEEEEeccccce--eeeee
Confidence 988887643 3477899999 888888888899999999998876 55443
|
| >3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=2.2e-19 Score=202.10 Aligned_cols=106 Identities=28% Similarity=0.495 Sum_probs=100.2
Q ss_pred CCchhhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCccccccCccchhhHHhhhcC---CCCCCHHHHHHHHHHHHHHh
Q psy9598 1528 KRPFNWKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRG---DNYESPIDFVKDVKRVFHNS 1604 (1915)
Q Consensus 1528 ~~~~~~~~~~~~ll~~l~~~~~s~~F~~pv~~~~~pdY~~iIk~Pmdl~tI~~kl~~---~~Y~s~~ef~~Dv~lif~Na 1604 (1915)
.+.+.+++.|+.||..|++++.++||+.||+. ++|+||+||++||||+||++||++ |.|.++++|..||+|||.||
T Consensus 77 ~ls~~~~~~c~~il~~l~~~~~s~~F~~Pv~~-~~pdY~~iIk~PmdL~tI~~kl~~~~~~~Y~s~~~f~~Dv~li~~Na 155 (207)
T 3u5n_A 77 GLSPVDQRKCERLLLYLYCHELSIEFQEPVPA-SIPNYYKIIKKPMDLSTVKKKLQKKHSQHYQIPDDFVADVRLIFKNC 155 (207)
T ss_dssp SSCHHHHHHHHHHHHHHHTSTTCGGGSSCCCT-TSTTHHHHCSSCCCHHHHHHHHSTTSTTCCSSHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHhccchhhhhccCCh-hhccHhHHhCCccCHHHHHHHHhcccCCCcCCHHHHHHHHHHHHHHH
Confidence 45677889999999999999999999999987 799999999999999999999997 79999999999999999999
Q ss_pred hhhcC-----------------CCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy9598 1605 RNYNQ-----------------NKRSKIYIMTTRLSEFAEEHLRRLTV 1635 (1915)
Q Consensus 1605 ~~yN~-----------------~~~s~i~~~a~~l~~~f~~~~~~~~~ 1635 (1915)
++||+ ++ |.|+.+|..|+++|+++|+++..
T Consensus 156 ~~yN~~~s~v~~~A~~l~~~~~~~-s~i~~~a~~L~~~fe~~~~~~~p 202 (207)
T 3u5n_A 156 ERFNEMMKVVQVYADTQEINLKAD-SEVAQAGKAVALYFEDKLTEIYS 202 (207)
T ss_dssp HHHHHHHHHHC----------CCC-CHHHHHHHHHHHHHHHHHHHHST
T ss_pred HHHCCCcchHHHHHHHHHhccccc-CHHHHHHHHHHHHHHHHHHHhCC
Confidence 99998 66 99999999999999999999864
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.5e-17 Score=202.14 Aligned_cols=280 Identities=12% Similarity=0.074 Sum_probs=188.2
Q ss_pred cCCCeEEEecccCCceeee-EEecCCCCcEEEEEEcCCCCEEEEEEC---CCcEEEEECCCCc--EEEEEeCCCCCEEEE
Q psy9598 451 PLSRSLMISSHKYSNLRQH-YVNLGHLSAVFCVLFDKLGEVIVTGAD---DLLIKLWRARDGK--LLATLRGCSGEISDI 524 (1915)
Q Consensus 451 ~~d~~~~i~~~~~~~~~~~-~~l~gH~~~V~~vafspdg~~LaTGs~---Dg~I~IWd~~tg~--~~~~l~gH~~~I~~L 524 (1915)
+.++.+.+|..+...-.+. ..+..|...+.+++|+|+|+ |++++. ++.|.+|++.++. .+..+..|...+.+|
T Consensus 13 ~~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~ 91 (347)
T 3hfq_A 13 KTSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYV 91 (347)
T ss_dssp SSCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEE
T ss_pred CCCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEE
Confidence 3455667776654332222 23445667888999999999 555544 6899999998776 455556677889999
Q ss_pred EEeCCCCEEEEEe-CCCcEEEEECC-CCc--eEEEeec---------CCCCeEEEEeccCccCCCcEEEEEeCCCeEEEE
Q psy9598 525 AIDNRNILLAAGT-VDKTIRIWNLQ-TLA--PISVLVG---------HQGIITGVNFCPLEVNGFNYLASTSTDGCIGFW 591 (1915)
Q Consensus 525 afspdg~~LaSgs-~DgtIrVWDl~-tg~--~~~~l~~---------h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iW 591 (1915)
+|+|+|++|++++ .++.|.+|++. ++. .+..+.. +...+.+++|+|++ .+++++..++.|.+|
T Consensus 92 a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg----~l~v~~~~~~~v~~~ 167 (347)
T 3hfq_A 92 AVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDN----RLAVIDLGSDKVYVY 167 (347)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTS----CEEEEETTTTEEEEE
T ss_pred EECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCC----cEEEEeCCCCEEEEE
Confidence 9999999888888 68999999996 333 2333321 12348899999954 577777788999999
Q ss_pred ecc-cCccccceeccCccccccccCCCCCceEEEEECCCCcEEEE-EeCCCeEEEEEecCC-CCCceeEEeccCC-----
Q psy9598 592 KYK-LDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLAT-GSGDHHVRVYKMDGV-DSPLGILEVEEHS----- 663 (1915)
Q Consensus 592 Dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Las-gs~Dg~I~IwDl~~~-~~~~~i~~l~~h~----- 663 (1915)
++. ++.......+. ......+..++|+|+|++|++ +..++.|.+|++... .....+..+....
T Consensus 168 ~~~~~g~~~~~~~~~---------~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~ 238 (347)
T 3hfq_A 168 NVSDAGQLSEQSVLT---------MEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTA 238 (347)
T ss_dssp EECTTSCEEEEEEEE---------CCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCS
T ss_pred EECCCCcEEEeeeEE---------cCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCC
Confidence 998 33211111000 111235678999999996655 567889999999642 1112222333222
Q ss_pred -CCeeEEEEcCCCCEE-EEEeCCCcEEEEEccCC-ceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEE
Q psy9598 664 -DKVDSIQWSHSHLRF-VSGSRDGTALIWYYKCS-QWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAI 740 (1915)
Q Consensus 664 -~~V~sl~fspdg~~L-~sgs~DG~I~IWDl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s 740 (1915)
..+.+++|+|+|++| +++..++.|.+|++... ...... ....+...+..++|+|+|++|++++
T Consensus 239 ~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~--------------~~~~~~~~~~~~~~spdg~~l~v~~ 304 (347)
T 3hfq_A 239 HNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQ--------------QISTEGDFPRDFDLDPTEAFVVVVN 304 (347)
T ss_dssp CCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEE--------------EEECSSSCCCEEEECTTSSEEEEEE
T ss_pred CCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeE--------------EEecCCCCcCeEEECCCCCEEEEEE
Confidence 358899999999977 55667899999998632 211111 0111234467899999999999988
Q ss_pred ecCCeEEEE--ECCCCceEE
Q psy9598 741 NFNFQIKIW--DAFNGDLVQ 758 (1915)
Q Consensus 741 ~~Dg~I~vw--D~~tg~~i~ 758 (1915)
..++.|.+| |..+|++..
T Consensus 305 ~~~~~v~v~~~d~~tg~l~~ 324 (347)
T 3hfq_A 305 QNTDNATLYARDLTSGKLSL 324 (347)
T ss_dssp TTTTEEEEEEECTTTCCEEE
T ss_pred cCCCcEEEEEEeCCCCeEEe
Confidence 756899999 555676553
|
| >2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.4e-19 Score=199.32 Aligned_cols=102 Identities=21% Similarity=0.295 Sum_probs=94.3
Q ss_pred CchhhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCcccccc--CccchhhHHhhhcCC---CCCCHHHHHHHHHHHHHH
Q psy9598 1529 RPFNWKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVI--APMDLGTIREELRGD---NYESPIDFVKDVKRVFHN 1603 (1915)
Q Consensus 1529 ~~~~~~~~~~~ll~~l~~~~~s~~F~~pv~~~~~pdY~~iIk--~Pmdl~tI~~kl~~~---~Y~s~~ef~~Dv~lif~N 1603 (1915)
+.+..++.|..||..|+.++.++||++||+ |+||+||+ +||||+||++||+++ .|.++++|+.||+|||+|
T Consensus 73 m~~~~~~~c~~iL~~l~~~~~s~pF~~pV~----~~Yy~iIk~~~PMDL~tIk~kL~~~~~~~Y~s~~eF~~Dv~Lif~N 148 (189)
T 2ro1_A 73 LSPANQRKCERVLLALFCHEPCRPLHQLAT----DSTFSLDQPGGTLDLTLIRARLQEKLSPPYSSPQEFAQDVGRMFKQ 148 (189)
T ss_dssp SCHHHHHHHHHHHHHHHHSTTHHHHHSCSC----CTTCSSSCSSCCCCHHHHHHHHHTSSSSCCSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcccCccchhhcCCCC----hhhhccccCCCcccHHHHHHHHhcCCCcccCCHHHHHHHHHHHHHH
Confidence 344456789999999999999999999998 78999998 899999999999999 999999999999999999
Q ss_pred hhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy9598 1604 SRNYNQNKRSKIYIMTTRLSEFAEEHLRRLTVR 1636 (1915)
Q Consensus 1604 a~~yN~~~~s~i~~~a~~l~~~f~~~~~~~~~~ 1636 (1915)
|++||+ + +.+|.+|..|+++|+++|+++...
T Consensus 149 ~~~yN~-~-s~~~~~a~~L~~~Fe~~~~~~~~~ 179 (189)
T 2ro1_A 149 FNKLTE-D-KADVQSIIGLQRFFETRMNEAFGD 179 (189)
T ss_dssp HHHHCC-S-SCSSHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHCC-C-CHHHHHHHHHHHHHHHHHHHhcCc
Confidence 999994 5 889999999999999999998754
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.3e-17 Score=202.54 Aligned_cols=274 Identities=9% Similarity=-0.058 Sum_probs=198.5
Q ss_pred ccccCCCeEEEecccCCceeeeEEec-CCCC-cEEEEEEcCCCCEEE-EEECCCcEEEEECCCCcEEEEEeCC-----CC
Q psy9598 448 YSGPLSRSLMISSHKYSNLRQHYVNL-GHLS-AVFCVLFDKLGEVIV-TGADDLLIKLWRARDGKLLATLRGC-----SG 519 (1915)
Q Consensus 448 ~tg~~d~~~~i~~~~~~~~~~~~~l~-gH~~-~V~~vafspdg~~La-TGs~Dg~I~IWd~~tg~~~~~l~gH-----~~ 519 (1915)
++++.++.+.+|+.... +....+. ++.. .+.+++|+|+|++|+ +++.++.|.+||+.+++.+..+... ..
T Consensus 5 v~~~~~~~v~~~d~~~~--~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~ 82 (337)
T 1pby_B 5 LAPARPDKLVVIDTEKM--AVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVK 82 (337)
T ss_dssp EEEETTTEEEEEETTTT--EEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEE
T ss_pred EEcCCCCeEEEEECCCC--cEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccc
Confidence 45667788888865433 3333443 3332 488999999998765 5556789999999999988877632 12
Q ss_pred CEEEEEEeCCCCEEEEEe------------CCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCe
Q psy9598 520 EISDIAIDNRNILLAAGT------------VDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGC 587 (1915)
Q Consensus 520 ~I~~Lafspdg~~LaSgs------------~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~Dgt 587 (1915)
.+.+++|+|+|++|++++ .++.|.+||+.+++.+..+.. ...+.+++|+|+ +.+|+++ ++.
T Consensus 83 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~d----g~~l~~~--~~~ 155 (337)
T 1pby_B 83 SLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARD----GSKLYGL--GRD 155 (337)
T ss_dssp CTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTT----SSCEEEE--SSS
T ss_pred cccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCC----CCEEEEe--CCe
Confidence 577899999999998886 579999999999988877764 456788999994 4777777 688
Q ss_pred EEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCC------------------------eEE
Q psy9598 588 IGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDH------------------------HVR 643 (1915)
Q Consensus 588 I~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg------------------------~I~ 643 (1915)
|.+||+.++.......... ... .+.|+|+|..|++++..+ .|.
T Consensus 156 i~~~d~~~~~~~~~~~~~~----------~~~---~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 222 (337)
T 1pby_B 156 LHVMDPEAGTLVEDKPIQS----------WEA---ETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLL 222 (337)
T ss_dssp EEEEETTTTEEEEEECSTT----------TTT---TTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEE
T ss_pred EEEEECCCCcEeeeeeccc----------cCC---CceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceE
Confidence 9999998876433322210 001 125778877665444322 468
Q ss_pred EEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCcccccccccccc
Q psy9598 644 VYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIK 723 (1915)
Q Consensus 644 IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 723 (1915)
+||+.+.. .. ...+..+...+.+++|+|+|.+|+++ ++.|.+||+.+++...... ....
T Consensus 223 ~~d~~~~~-~~-~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~-----------------~~~~ 281 (337)
T 1pby_B 223 TMDLETGE-MA-MREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVP-----------------LPHS 281 (337)
T ss_dssp EEETTTCC-EE-EEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEE-----------------CSSC
T ss_pred EEeCCCCC-ce-EeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceec-----------------CCCc
Confidence 89985432 12 34455677788999999999999888 7999999998876443211 1134
Q ss_pred EEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCC
Q psy9598 724 VTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTN 765 (1915)
Q Consensus 724 V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~ 765 (1915)
+.+++|+|+|++|++++. ++.|.+||+.+++.+..+..+.+
T Consensus 282 ~~~~~~s~dg~~l~~~~~-~~~i~v~d~~~~~~~~~~~~~~~ 322 (337)
T 1pby_B 282 YYSVNVSTDGSTVWLGGA-LGDLAAYDAETLEKKGQVDLPGN 322 (337)
T ss_dssp CCEEEECTTSCEEEEESB-SSEEEEEETTTCCEEEEEECGGG
T ss_pred eeeEEECCCCCEEEEEcC-CCcEEEEECcCCcEEEEEEcCCC
Confidence 678999999999999876 99999999999999988875543
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.76 E-value=7.4e-17 Score=196.97 Aligned_cols=308 Identities=10% Similarity=-0.003 Sum_probs=197.0
Q ss_pred EEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCC-CCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccc
Q psy9598 523 DIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQ-GIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISK 601 (1915)
Q Consensus 523 ~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~-~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~ 601 (1915)
.+++++++.++++++.+++|.+||+.+++.+..+..+. ..+.+++|+|++ ..++++++.++.|.+||+.++.....
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg---~~~~v~~~~~~~i~~~d~~t~~~~~~ 80 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDN---RTAYVLNNHYGDIYGIDLDTCKNTFH 80 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTS---SEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCC---CEEEEEeCCCCcEEEEeCCCCcEEEE
Confidence 45678889999999999999999999999888887543 257899999843 23455666789999999988764433
Q ss_pred eeccCccccccccCCCCCceEEEEECCCCcEEEEEeCC------------CeEEEEEecCCCCCceeEEeccCCCCeeEE
Q psy9598 602 TVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGD------------HHVRVYKMDGVDSPLGILEVEEHSDKVDSI 669 (1915)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~D------------g~I~IwDl~~~~~~~~i~~l~~h~~~V~sl 669 (1915)
....... ......+.+++|+|+|++|++++.+ +.|.+||+.+......+..+. +...+.++
T Consensus 81 ~~~~~~~------~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~ 153 (349)
T 1jmx_B 81 ANLSSVP------GEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLM 153 (349)
T ss_dssp EESCCST------TEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCE
T ss_pred EEccccc------ccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccce
Confidence 3221000 0001236789999999999998865 899999995432222233333 34468899
Q ss_pred EEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCC-----ccc---cccccccccEEEEEECCCCCEEEEEEe
Q psy9598 670 QWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHT-----KET---SDETNKKIKVTMVAWDASDRWVITAIN 741 (1915)
Q Consensus 670 ~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~-----~~~---~~~~~~~~~V~~va~spdg~~L~t~s~ 741 (1915)
+|+|+|. +++++. .|.+||+.+++............+.. ... ............+++++++........
T Consensus 154 ~~s~dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 230 (349)
T 1jmx_B 154 RAADDGS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATAD 230 (349)
T ss_dssp EECTTSC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCE
T ss_pred eECCCCc-EEEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccc
Confidence 9999999 665544 49999999887554321110000000 000 000000113445777766532211111
Q ss_pred cCCeEEEEECCCCce-EEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEE
Q psy9598 742 FNFQIKIWDAFNGDL-VQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDG 820 (1915)
Q Consensus 742 ~Dg~I~vwD~~tg~~-i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~v 820 (1915)
....+..++..+++. +..+..+...+.+++|+|.++.+|+++ ++.|.+||+.+++. +..+. ....+.++
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~--~~~~~------~~~~~~~~ 300 (349)
T 1jmx_B 231 LLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKL--IKAAN------LDHTYYCV 300 (349)
T ss_dssp EEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEE--EEEEE------CSSCCCEE
T ss_pred cceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeE--EEEEc------CCCCccce
Confidence 011223355555542 112234566789999998567777777 88999999998876 44443 12357789
Q ss_pred EEcCCCCEEEEEeCCCeEEEEeCCCCcccccCC
Q psy9598 821 KWSPDGTTCALTDSYGHLLVYGLGGFKRPQNIP 853 (1915)
Q Consensus 821 afSpdg~~Lasg~~dG~I~Iwdl~s~~~~~~l~ 853 (1915)
+|+|+|++|++++.++.|.+|++.+++.+..++
T Consensus 301 ~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~ 333 (349)
T 1jmx_B 301 AFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIK 333 (349)
T ss_dssp EECSSSSCEEEESBSSEEEEEETTTTEEEEEEE
T ss_pred EECCCCCEEEEecCCCeEEEEeccccceeeeee
Confidence 999999999989889999999999887766543
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.75 E-value=1.4e-16 Score=216.62 Aligned_cols=341 Identities=14% Similarity=0.049 Sum_probs=220.1
Q ss_pred cEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCC-----EEEEEEeCCCCEEEEEeCC---------CcEE
Q psy9598 478 AVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGE-----ISDIAIDNRNILLAAGTVD---------KTIR 543 (1915)
Q Consensus 478 ~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~-----I~~Lafspdg~~LaSgs~D---------gtIr 543 (1915)
...+++|+|+|.+|+++ ||.|++||+.++++...+.+|... ...++|||||++|+.++.+ +.+.
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~ 95 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYD 95 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred cccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEE
Confidence 35579999999999987 899999999999998888888643 2447899999999999876 5667
Q ss_pred EEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCC-----
Q psy9598 544 IWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGN----- 618 (1915)
Q Consensus 544 VWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~----- 618 (1915)
|||+.++++. .+..|.+.+..++|+|+ ++.|+.++ ++.|.+|++.++.... +...... ...+.++.
T Consensus 96 ~~d~~~~~~~-~l~~~~~~~~~~~~SPd----G~~la~~~-~~~i~~~~~~~~~~~~-lt~~g~~--~~~~~g~~~~v~~ 166 (740)
T 4a5s_A 96 IYDLNKRQLI-TEERIPNNTQWVTWSPV----GHKLAYVW-NNDIYVKIEPNLPSYR-ITWTGKE--DIIYNGITDWVYE 166 (740)
T ss_dssp EEETTTTEEC-CSSCCCTTEEEEEECSS----TTCEEEEE-TTEEEEESSTTSCCEE-CCSCCBT--TTEEESBCCHHHH
T ss_pred EEECCCCcEE-EcccCCCcceeeEECCC----CCEEEEEE-CCeEEEEECCCCceEE-EcCCCCc--cceecCccccccc
Confidence 9999998754 46678889999999995 48888874 6899999998775322 1111000 00000111
Q ss_pred ----CceEEEEECCCCcEEEEEeCCC------------------------------------eEEEEEecC---CCCCce
Q psy9598 619 ----AHILCSSFSPGGLFLATGSGDH------------------------------------HVRVYKMDG---VDSPLG 655 (1915)
Q Consensus 619 ----~~V~~l~fspdg~~Lasgs~Dg------------------------------------~I~IwDl~~---~~~~~~ 655 (1915)
+....+.|||||+.||.++.|. .|+|||+.+ ... ..
T Consensus 167 ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~-~~ 245 (740)
T 4a5s_A 167 EEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTN-AT 245 (740)
T ss_dssp HHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSC-CC
T ss_pred chhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCc-ce
Confidence 2224589999999999875322 477788754 211 02
Q ss_pred eEEec------cCCCCeeEEEEcCCCCEEEEEeC----CCcEEEEEccCCc----eEEeeecccccCCCCcccccccccc
Q psy9598 656 ILEVE------EHSDKVDSIQWSHSHLRFVSGSR----DGTALIWYYKCSQ----WRFIRLDMNTCLPHTKETSDETNKK 721 (1915)
Q Consensus 656 i~~l~------~h~~~V~sl~fspdg~~L~sgs~----DG~I~IWDl~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 721 (1915)
...+. +|...+..++|+|+|+.++.... +..|.+||+.+++ +....... ...+.
T Consensus 246 ~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~------------~~~~~ 313 (740)
T 4a5s_A 246 SIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHI------------EMSTT 313 (740)
T ss_dssp EEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEE------------EECSS
T ss_pred EEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEee------------eccCC
Confidence 22332 37788999999999996665533 3479999998876 22110000 00111
Q ss_pred cc-----EEEEEECCCCCEEE-EEEecCC--eEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCE-EEEEec----Cc-
Q psy9598 722 IK-----VTMVAWDASDRWVI-TAINFNF--QIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRV-LLSAGH----DG- 787 (1915)
Q Consensus 722 ~~-----V~~va~spdg~~L~-t~s~~Dg--~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~-LaSgs~----DG- 787 (1915)
.. ...++|+|||+.|+ ..+..+| .|++||+.++.+.....+ ...|..+.+ + ++.. +++++. .+
T Consensus 314 ~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT~g-~~~v~~~~~-~-d~~~i~f~~~~~~~~~~~ 390 (740)
T 4a5s_A 314 GWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITKG-TWEVIGIEA-L-TSDYLYYISNEYKGMPGG 390 (740)
T ss_dssp SCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEESCCS-SSCEEEEEE-E-CSSEEEEEESCGGGCTTC
T ss_pred ceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEecccC-CEEEEEEEE-E-eCCEEEEEEecCCCCCce
Confidence 11 23578999999887 6654344 688899987766554444 445665543 4 3454 444443 23
Q ss_pred -eEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEEeCC---CeEEEEeCCCCcc
Q psy9598 788 -LIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSY---GHLLVYGLGGFKR 848 (1915)
Q Consensus 788 -~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~d---G~I~Iwdl~s~~~ 848 (1915)
.|+..++.++.. ...+...+ ....+.+..+.|||+|.+++..... ..+.++++.+++.
T Consensus 391 ~~ly~v~~~g~~~--~~~lt~~~-~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~~~~~ 452 (740)
T 4a5s_A 391 RNLYKIQLIDYTK--VTCLSCEL-NPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKG 452 (740)
T ss_dssp BEEEEEETTEEEE--EEESSTTT-STTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTTEE
T ss_pred eEEEEEECCCCCc--ceeecccc-CCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEECCCCcE
Confidence 444445443322 11111000 1123568899999999988776544 4678888877654
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.75 E-value=5.2e-16 Score=191.54 Aligned_cols=295 Identities=11% Similarity=0.050 Sum_probs=196.0
Q ss_pred ccCCCeEEEecccC--CceeeeEEecCCCCcEEEEEEcCCCCEEEEEECC----CcEEEEECCC--Cc--EEEEEeCCCC
Q psy9598 450 GPLSRSLMISSHKY--SNLRQHYVNLGHLSAVFCVLFDKLGEVIVTGADD----LLIKLWRARD--GK--LLATLRGCSG 519 (1915)
Q Consensus 450 g~~d~~~~i~~~~~--~~~~~~~~l~gH~~~V~~vafspdg~~LaTGs~D----g~I~IWd~~t--g~--~~~~l~gH~~ 519 (1915)
++.++.+.+|..+. ..+.....+ |...+.+++|+|+|++|++++.+ +.|.+|++.. |. .+..+..+..
T Consensus 23 ~~~~~~i~~~~~d~~~g~~~~~~~~--~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~ 100 (361)
T 3scy_A 23 SGNSKGIYTFRFNEETGESLPLSDA--EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGA 100 (361)
T ss_dssp SSSCCEEEEEEEETTTCCEEEEEEE--ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSS
T ss_pred CCCCCCEEEEEEeCCCCCEEEeecc--cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCC
Confidence 34456777776543 334444444 78888999999999999999986 7999998765 54 3444555666
Q ss_pred CEEEEEEeCCCCEEEEEe-CCCcEEEEECCCCceEEE------eec--------CCCCeEEEEeccCccCCCcEEE-EEe
Q psy9598 520 EISDIAIDNRNILLAAGT-VDKTIRIWNLQTLAPISV------LVG--------HQGIITGVNFCPLEVNGFNYLA-STS 583 (1915)
Q Consensus 520 ~I~~Lafspdg~~LaSgs-~DgtIrVWDl~tg~~~~~------l~~--------h~~~V~sl~fsp~~~~d~~~L~-sgs 583 (1915)
.+..+++ ++++|++++ .++.|.+|++.+...+.. ..+ +...+.+++|+|+ +++|+ ++.
T Consensus 101 ~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spd----g~~l~~~~~ 174 (361)
T 3scy_A 101 DPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPD----GKYLLADDL 174 (361)
T ss_dssp CEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTT----SSEEEEEET
T ss_pred CcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCC----CCEEEEEeC
Confidence 7888888 788777766 588999999975432211 111 1234588999994 46554 455
Q ss_pred CCCeEEEEecccCcc------ccceeccCccccccccCCCCCceEEEEECCCCcEEEEEe-CCCeEEEEEecCCCCCcee
Q psy9598 584 TDGCIGFWKYKLDID------ISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGS-GDHHVRVYKMDGVDSPLGI 656 (1915)
Q Consensus 584 ~DgtI~iWDl~~~~~------~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs-~Dg~I~IwDl~~~~~~~~i 656 (1915)
.++.|.+|++..... +...... ..........+.+++|+|+|++|++++ .++.|.+|++... ....+
T Consensus 175 ~~~~v~v~~~~~~~~~~~~~~l~~~~~~-----~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g-~~~~~ 248 (361)
T 3scy_A 175 GTDQIHKFNINPNANADNKEKFLTKGTP-----EAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADG-MLDEI 248 (361)
T ss_dssp TTTEEEEEEECTTCCTTTCCCCEEEEEE-----EEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETT-EEEEE
T ss_pred CCCEEEEEEEcCCCCcccccceeecccc-----cceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCC-ceEEe
Confidence 689999999876542 1110000 000112235578999999999887777 6899999999532 22222
Q ss_pred EEe---ccCCCCeeEEEEcCCCCEEEEEeCC--CcEEEEEcc--CCceEEeeecccccCCCCccccccccccccEEEEEE
Q psy9598 657 LEV---EEHSDKVDSIQWSHSHLRFVSGSRD--GTALIWYYK--CSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAW 729 (1915)
Q Consensus 657 ~~l---~~h~~~V~sl~fspdg~~L~sgs~D--G~I~IWDl~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~ 729 (1915)
..+ ..+...+.+++|+|+|++|+++..+ +.|.+|++. ++....... .. ....+..++|
T Consensus 249 ~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~--------------~~-~g~~~~~~~~ 313 (361)
T 3scy_A 249 QTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGY--------------QL-TGIHPRNFII 313 (361)
T ss_dssp EEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEE--------------EE-CSSCCCEEEE
T ss_pred EEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeE--------------ec-CCCCCceEEE
Confidence 222 3344557899999999988776654 899999986 344322110 00 0234568999
Q ss_pred CCCCCEEEEEEecCCeEEEE--ECCCCceEEEe-eCCCCCeEEEEEc
Q psy9598 730 DASDRWVITAINFNFQIKIW--DAFNGDLVQVL-KGHTNEVFVLESH 773 (1915)
Q Consensus 730 spdg~~L~t~s~~Dg~I~vw--D~~tg~~i~~l-~gH~~~V~sl~~s 773 (1915)
+|+|++|++++..++.|.+| |..++++.... ..+...+.||.|.
T Consensus 314 spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 314 TPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp CTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred CCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence 99999999998658999996 55577765544 2345568888875
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.75 E-value=5.5e-17 Score=205.95 Aligned_cols=250 Identities=15% Similarity=0.204 Sum_probs=173.2
Q ss_pred CCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCC-----------cEEE----EEeCCCCCEEEEEEeCCCCEEE----E
Q psy9598 475 HLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDG-----------KLLA----TLRGCSGEISDIAIDNRNILLA----A 535 (1915)
Q Consensus 475 H~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg-----------~~~~----~l~gH~~~I~~Lafspdg~~La----S 535 (1915)
+...++++++++++.+|++|+.+| |+||+.... .... ....|.+.|++|+|+++|++|| +
T Consensus 35 ~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~s 113 (434)
T 2oit_A 35 PKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMS 113 (434)
T ss_dssp CCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEE
T ss_pred CCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEec
Confidence 345688999999999999999997 889875311 1110 1123567899999999999999 7
Q ss_pred EeCCCcEEEEECCCC--------ce---EEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceec
Q psy9598 536 GTVDKTIRIWNLQTL--------AP---ISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVF 604 (1915)
Q Consensus 536 gs~DgtIrVWDl~tg--------~~---~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~ 604 (1915)
|+.|++|+|||+.++ ++ +..+.+|...|++|+|+|. ++.+|++|+.||+|++||++++.....
T Consensus 114 gs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~---~~~~las~s~Dg~v~iwD~~~~~~~~~--- 187 (434)
T 2oit_A 114 SEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPT---VPSMVAVCLADGSIAVLQVTETVKVCA--- 187 (434)
T ss_dssp TTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSS---CTTEEEEEETTSCEEEEEESSSEEEEE---
T ss_pred cCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCC---CCCEEEEEECCCeEEEEEcCCCcceee---
Confidence 888999999998754 22 4556789999999999994 258999999999999999987732111
Q ss_pred cCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEecc-------CCCCeeEEEEcCCCCE
Q psy9598 605 HEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEE-------HSDKVDSIQWSHSHLR 677 (1915)
Q Consensus 605 ~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~-------h~~~V~sl~fspdg~~ 677 (1915)
..+|...|.+++|+|+|.+|++|+.||.|++||+++ .....+.. |...|.+++|++++.+
T Consensus 188 ---------~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~~----~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~ 254 (434)
T 2oit_A 188 ---------TLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTL----QEKKVIPCPPFYESDHPVRVLDVLWIGTYVF 254 (434)
T ss_dssp ---------EECGGGCEEEEEECTTSSCEEEEETTSCEEEECTTC----CEEEEECCCTTCCTTSCEEEEEEEEEETTEE
T ss_pred ---------ccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccCC----cccccccCCcccCCCCceeEEEEEEecCceE
Confidence 113557899999999999999999999999999851 12222322 3348999999998877
Q ss_pred EEE-EeCCCc------EEEEEccCCce---EEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEE
Q psy9598 678 FVS-GSRDGT------ALIWYYKCSQW---RFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIK 747 (1915)
Q Consensus 678 L~s-gs~DG~------I~IWDl~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~ 747 (1915)
+++ ++.+|. +++|++....- .........+.. ..........+.+-++..+++++++..+.|.
T Consensus 255 l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~-------~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~ 327 (434)
T 2oit_A 255 AIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYG-------SCTERQHHYYLSYIEEWDLVLAASAASTEVS 327 (434)
T ss_dssp EEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCC-------CCSSSCCCEEEEEEGGGTEEEEEETTCSBCE
T ss_pred EEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCC-------CCCCcCcceeeehhccCCEEEEecCCCCcee
Confidence 654 334433 89999976421 010000000000 0011122223444467778888777566677
Q ss_pred EEEC
Q psy9598 748 IWDA 751 (1915)
Q Consensus 748 vwD~ 751 (1915)
|+..
T Consensus 328 vl~~ 331 (434)
T 2oit_A 328 ILAR 331 (434)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 7664
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=3.2e-17 Score=222.10 Aligned_cols=320 Identities=12% Similarity=0.053 Sum_probs=212.7
Q ss_pred EEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCCC---CeEEEEeccCccCCCcEEEEEeC---------CCeEEE
Q psy9598 523 DIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQG---IITGVNFCPLEVNGFNYLASTST---------DGCIGF 590 (1915)
Q Consensus 523 ~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~---~V~sl~fsp~~~~d~~~L~sgs~---------DgtI~i 590 (1915)
+++|+|+|.++++ +.|++|++||+.++.+...+.+|.. .|.+++|+|+ +++|++++. ++.|.+
T Consensus 20 ~~~~s~dg~~~~~-~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpD----g~~la~~~~~~~~~~~s~~~~i~~ 94 (719)
T 1z68_A 20 FPNWISGQEYLHQ-SADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPD----RQFVYLESDYSKLWRYSYTATYYI 94 (719)
T ss_dssp CCEESSSSEEEEE-CTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTT----SSEEEEEEEEEECSSSCEEEEEEE
T ss_pred ccEECCCCeEEEE-cCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCC----CCeEEEEecCceeEEeecceEEEE
Confidence 7899999966555 4699999999999998887776654 4899999994 588888876 789999
Q ss_pred EecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCe----
Q psy9598 591 WKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKV---- 666 (1915)
Q Consensus 591 WDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V---- 666 (1915)
||+.++..+....+ ...+.+++|||||+.|+++. ++.|++|++.+... ..+ ...++...|
T Consensus 95 ~d~~~g~~~~~~~l-------------~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~-~~l-~~~~~~~~v~~g~ 158 (719)
T 1z68_A 95 YDLSNGEFVRGNEL-------------PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPP-FQI-TFNGRENKIFNGI 158 (719)
T ss_dssp EETTTTEECCSSCC-------------CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCC-EEC-CCCCBTTTEEESS
T ss_pred EECCCCccccceec-------------CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCc-EEE-ecCCCcCCeEccc
Confidence 99988754211111 13477899999999999885 78999999854321 111 112332222
Q ss_pred -------------eEEEEcCCCCEEEEEeCCC----------------------------------cEEEEEccCCceE-
Q psy9598 667 -------------DSIQWSHSHLRFVSGSRDG----------------------------------TALIWYYKCSQWR- 698 (1915)
Q Consensus 667 -------------~sl~fspdg~~L~sgs~DG----------------------------------~I~IWDl~~~~~~- 698 (1915)
.+++|+|+|++|++++.|. .|++||+.++...
T Consensus 159 ~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~ 238 (719)
T 1z68_A 159 PDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVG 238 (719)
T ss_dssp CCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHC
T ss_pred ccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccc
Confidence 4899999999999988652 6778887766521
Q ss_pred EeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEec-C--CeEEEEE----CCCCceEEEe----eCCCCCe
Q psy9598 699 FIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINF-N--FQIKIWD----AFNGDLVQVL----KGHTNEV 767 (1915)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~-D--g~I~vwD----~~tg~~i~~l----~gH~~~V 767 (1915)
...+ ........+...+..++|+||+.++++.... + ..|.+|| +.++++...+ .+|.+.|
T Consensus 239 ~~~~---------~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~ 309 (719)
T 1z68_A 239 PQEV---------PVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWA 309 (719)
T ss_dssp CEEC---------CCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCS
T ss_pred eeEc---------cCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceE
Confidence 0000 0001123466788999999998777665431 1 2589999 8888776666 4777777
Q ss_pred E-----EEEEccCCCCEEE--EEecCc--eEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEEeCC---
Q psy9598 768 F-----VLESHPFDSRVLL--SAGHDG--LIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSY--- 835 (1915)
Q Consensus 768 ~-----sl~~sp~dg~~La--Sgs~DG--~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~d--- 835 (1915)
. .+.|+| ++..|+ ++..+| .|.+|++.++.. ..+. .+...|..+.++ ++..|++.+.+
T Consensus 310 ~~~~~~~~~~sp-dg~~l~~~~~~~~g~~~l~~~~~~~~~~---~~lt-----~~~~~v~~~~~~-d~~~i~~~~~~~~~ 379 (719)
T 1z68_A 310 GGFFVSTPVFSY-DAISYYKIFSDKDGYKHIHYIKDTVENA---IQIT-----SGKWEAINIFRV-TQDSLFYSSNEFEE 379 (719)
T ss_dssp SSSSCCCCEECT-TSSCEEEEEECTTSCEEEEEESSCSTTC---EECS-----CSSSCEEEEEEE-CSSEEEEEESCGGG
T ss_pred ccccCCccEECC-CCCeEEEEEEccCCceEEEEEECCCCce---Eecc-----cCceEEEEEEEE-eCCEEEEEEecCCC
Confidence 6 889999 777444 344555 577777766553 2221 234457777777 88888877765
Q ss_pred --CeEEEEeCCC--C----ccccc-C------CCceeecCCCCeeeecC-C---CccceeecccCC
Q psy9598 836 --GHLLVYGLGG--F----KRPQN-I------PRELFFHTDYRTLNRPN-G---LFEPTYDEVTNL 882 (1915)
Q Consensus 836 --G~I~Iwdl~s--~----~~~~~-l------~~~~~F~~d~~~Lv~~~-~---~~~~v~D~~t~~ 882 (1915)
+.+.||.+.. + .++.. + ...+.|++|+..++... . ..+.+||..++.
T Consensus 380 ~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~ 445 (719)
T 1z68_A 380 YPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQ 445 (719)
T ss_dssp CTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSCC
T ss_pred CCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCCC
Confidence 7788887653 3 12211 1 12467888888766321 1 123466665543
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.73 E-value=3.4e-16 Score=194.78 Aligned_cols=305 Identities=9% Similarity=-0.048 Sum_probs=204.1
Q ss_pred EEEEECCCCcEEEEEeCCCCCEEE-----EEEeCCCCEEEEEeC-CC--cEEEEECCCCceEEEeecCCCCeEEEEeccC
Q psy9598 500 IKLWRARDGKLLATLRGCSGEISD-----IAIDNRNILLAAGTV-DK--TIRIWNLQTLAPISVLVGHQGIITGVNFCPL 571 (1915)
Q Consensus 500 I~IWd~~tg~~~~~l~gH~~~I~~-----Lafspdg~~LaSgs~-Dg--tIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~ 571 (1915)
...++..+|..+..+..|...+.. .+|+|||++|+.++. ++ .|.+||+.++.......+|...+.++.|+|+
T Consensus 12 ~~~~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spd 91 (388)
T 3pe7_A 12 DTYQDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPD 91 (388)
T ss_dssp EEEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTT
T ss_pred eEEecCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCC
Confidence 345678889999999988877776 899999999999887 66 4888999999888777777777767889994
Q ss_pred ccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceE--EEEECCCCcEEEEE-------------
Q psy9598 572 EVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHIL--CSSFSPGGLFLATG------------- 636 (1915)
Q Consensus 572 ~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~--~l~fspdg~~Lasg------------- 636 (1915)
+..|++++.++.|.+||+.++......... ...+. ...+++++.+++..
T Consensus 92 ----g~~l~~~~~~~~l~~~d~~~g~~~~~~~~~------------~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~ 155 (388)
T 3pe7_A 92 ----DDALFYVKDGRNLMRVDLATLEENVVYQVP------------AEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDW 155 (388)
T ss_dssp ----SSEEEEEETTTEEEEEETTTCCEEEEEECC------------TTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSH
T ss_pred ----CCEEEEEeCCCeEEEEECCCCcceeeeech------------hhcccccceeECCCCCeeccccccCccccccccc
Confidence 589999999999999999987543222211 12232 23458999888743
Q ss_pred ---------eCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcC-CCCEEEEEeCCC------cEEEEEccCCceEEe
Q psy9598 637 ---------SGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSH-SHLRFVSGSRDG------TALIWYYKCSQWRFI 700 (1915)
Q Consensus 637 ---------s~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fsp-dg~~L~sgs~DG------~I~IWDl~~~~~~~~ 700 (1915)
+.++.|.+||+.+. ....+..+...+..++|+| +|..|+.++.++ .|.+||+..+....+
T Consensus 156 ~~~~~~~~~~~~~~l~~~d~~~g----~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l 231 (388)
T 3pe7_A 156 KKFHEFYFTKPCCRLMRVDLKTG----ESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKV 231 (388)
T ss_dssp HHHHHHGGGCCCEEEEEEETTTC----CEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEES
T ss_pred chhhhhhccCCcceEEEEECCCC----ceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEe
Confidence 24467899998532 2334456677899999999 999888777543 677777665542221
Q ss_pred eecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCC----eEEEEECCCCceE--EEeeCCCCC---eEEEE
Q psy9598 701 RLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNF----QIKIWDAFNGDLV--QVLKGHTNE---VFVLE 771 (1915)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg----~I~vwD~~tg~~i--~~l~gH~~~---V~sl~ 771 (1915)
. .......+..++|+|+|+.|+..+..++ .|++||+.+++.. ..+.++... ...++
T Consensus 232 ~---------------~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~ 296 (388)
T 3pe7_A 232 K---------------THAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSL 296 (388)
T ss_dssp C---------------CCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSE
T ss_pred e---------------eCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCe
Confidence 0 0001135778899999998866554233 3999999998743 333331110 11236
Q ss_pred EccCCCCEEEEE---------ecCceEEEEECCCCccccceeeeeeec------CCCCcceEEEEEcCCCCEEEEEe-CC
Q psy9598 772 SHPFDSRVLLSA---------GHDGLIIIWDILSSKQRGYKWFHNIVE------GQGEGALFDGKWSPDGTTCALTD-SY 835 (1915)
Q Consensus 772 ~sp~dg~~LaSg---------s~DG~I~IWdl~s~~~~~~~~~~~~~~------~~~~~~V~~vafSpdg~~Lasg~-~d 835 (1915)
|+| ++..|+.. +.++.|++||+.++.. . .+..... ......+.+++|+|||+.|++++ .+
T Consensus 297 ~sp-dg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~--~-~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~ 372 (388)
T 3pe7_A 297 MVG-DGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ--H-RVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVH 372 (388)
T ss_dssp EEE-EECCC------------CCCCEEEEEETTTTEE--E-EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTT
T ss_pred Ecc-CCCcceeEeeeccccccCCCCEEEEEeccCCce--E-EeccccCcccccccccccCCCCccCCCCCCEEEEEecCC
Confidence 899 77766643 4567999999988765 2 2220000 00011477889999999888765 45
Q ss_pred CeEEEEeC
Q psy9598 836 GHLLVYGL 843 (1915)
Q Consensus 836 G~I~Iwdl 843 (1915)
|...||.+
T Consensus 373 g~~~l~~~ 380 (388)
T 3pe7_A 373 GKPALYLA 380 (388)
T ss_dssp SSCEEEEE
T ss_pred CceeEEEE
Confidence 66556544
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.73 E-value=8.9e-17 Score=200.03 Aligned_cols=294 Identities=11% Similarity=-0.017 Sum_probs=202.4
Q ss_pred eeEEecCCCCcEEE-----EEEcCCCCEEEEEEC-CC--cEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCC
Q psy9598 468 QHYVNLGHLSAVFC-----VLFDKLGEVIVTGAD-DL--LIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVD 539 (1915)
Q Consensus 468 ~~~~l~gH~~~V~~-----vafspdg~~LaTGs~-Dg--~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~D 539 (1915)
....|..|...+.. ++|+|||++|+.++. +| .|.+||+.++.......+|...+.+++|+|||+.|+.++.+
T Consensus 22 ~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~ 101 (388)
T 3pe7_A 22 QVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDG 101 (388)
T ss_dssp EEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETT
T ss_pred ceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCC
Confidence 34567778777777 899999999999987 66 48889999998888777777777678999999999999999
Q ss_pred CcEEEEECCCCceEEEeecCCCCeEEEEe--ccCccCCCcEEEEE----------------------eCCCeEEEEeccc
Q psy9598 540 KTIRIWNLQTLAPISVLVGHQGIITGVNF--CPLEVNGFNYLAST----------------------STDGCIGFWKYKL 595 (1915)
Q Consensus 540 gtIrVWDl~tg~~~~~l~~h~~~V~sl~f--sp~~~~d~~~L~sg----------------------s~DgtI~iWDl~~ 595 (1915)
+.|++||+.+++....+..+...+....| +| ++.+|+.. ..++.|.+||+.+
T Consensus 102 ~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~----dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~ 177 (388)
T 3pe7_A 102 RNLMRVDLATLEENVVYQVPAEWVGYGTWVANS----DCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKT 177 (388)
T ss_dssp TEEEEEETTTCCEEEEEECCTTEEEEEEEEECT----TSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTT
T ss_pred CeEEEEECCCCcceeeeechhhcccccceeECC----CCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCC
Confidence 99999999999988777777766655554 55 44666532 2447899999987
Q ss_pred CccccceeccCccccccccCCCCCceEEEEECC-CCcEEEEEeCC------CeEEEEEecCCCCCceeEEeccCC--CCe
Q psy9598 596 DIDISKTVFHEPVMFNERIRPGNAHILCSSFSP-GGLFLATGSGD------HHVRVYKMDGVDSPLGILEVEEHS--DKV 666 (1915)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fsp-dg~~Lasgs~D------g~I~IwDl~~~~~~~~i~~l~~h~--~~V 666 (1915)
+...... .+...+..++|+| +|..|+.+... ..|.++++.+. ....+..+. ..+
T Consensus 178 g~~~~l~-------------~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~----~~~~l~~~~~~~~~ 240 (388)
T 3pe7_A 178 GESTVIL-------------QENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGT----NMRKVKTHAEGESC 240 (388)
T ss_dssp CCEEEEE-------------EESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSC----CCEESCCCCTTEEE
T ss_pred CceEEee-------------cCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCC----ceEEeeeCCCCccc
Confidence 7432111 1235678999999 99988877653 26777776332 123333344 357
Q ss_pred eEEEEcCCCCEEEEEeC-CC----cEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEE-
Q psy9598 667 DSIQWSHSHLRFVSGSR-DG----TALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAI- 740 (1915)
Q Consensus 667 ~sl~fspdg~~L~sgs~-DG----~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s- 740 (1915)
..++|+|+|+.|+..+. ++ .|.+||+.+++...+.... .... .......++|+|+|+.|++..
T Consensus 241 ~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~-----~~~~------~~~~~~~~~~spdg~~l~~~~~ 309 (388)
T 3pe7_A 241 THEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMP-----ACSH------LMSNYDGSLMVGDGSDAPVDVQ 309 (388)
T ss_dssp EEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEEC-----CEEE------EEECTTSSEEEEEECCC-----
T ss_pred ccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCC-----Ccee------eeecCCCCeEccCCCcceeEee
Confidence 88899999997765443 22 3999999988754322100 0000 000011136899999888653
Q ss_pred -------ecCCeEEEEECCCCceEEEeeCCCC-----------CeEEEEEccCCCCEEEEEe-cCceEEEEECC
Q psy9598 741 -------NFNFQIKIWDAFNGDLVQVLKGHTN-----------EVFVLESHPFDSRVLLSAG-HDGLIIIWDIL 795 (1915)
Q Consensus 741 -------~~Dg~I~vwD~~tg~~i~~l~gH~~-----------~V~sl~~sp~dg~~LaSgs-~DG~I~IWdl~ 795 (1915)
..+..|++||+.+++. ..+..|.. .+.+++|+| +++.|+.++ .+|...||.+.
T Consensus 310 ~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~sp-Dg~~l~~~s~~~g~~~l~~~~ 381 (388)
T 3pe7_A 310 DDSGYKIENDPFLYVFNMKNGTQ-HRVARHDTSWKVFEGDRQVTHPHPSFTP-DDKQILFTSDVHGKPALYLAT 381 (388)
T ss_dssp -------CCCCEEEEEETTTTEE-EEEEECCCCCCCBTTBSSTTCCCCEECT-TSSEEEEEECTTSSCEEEEEE
T ss_pred eccccccCCCCEEEEEeccCCce-EEeccccCcccccccccccCCCCccCCC-CCCEEEEEecCCCceeEEEEE
Confidence 2267899999988765 44555655 578899999 888777655 47777777553
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.72 E-value=4e-15 Score=184.32 Aligned_cols=289 Identities=9% Similarity=-0.005 Sum_probs=189.2
Q ss_pred EEEEEECC--CcEEEEEC--CCCcEEE--EEe-CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECC-CCceEEEeecC-C
Q psy9598 490 VIVTGADD--LLIKLWRA--RDGKLLA--TLR-GCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQ-TLAPISVLVGH-Q 560 (1915)
Q Consensus 490 ~LaTGs~D--g~I~IWd~--~tg~~~~--~l~-gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~-tg~~~~~l~~h-~ 560 (1915)
+|++|+.. +.|.+|++ .+|.+.. ... ++...+..++|+|+|++|++++.+ .|.+|++. ++......... .
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~ 82 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG 82 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC
Confidence 45666653 46777654 5665432 221 344568899999999999999887 99999997 77765433211 1
Q ss_pred CCeEEEEeccCccCCCc--EEEEEe-------------CCCeEEEEeccc-CccccceeccCccccccccCCCCCceEEE
Q psy9598 561 GIITGVNFCPLEVNGFN--YLASTS-------------TDGCIGFWKYKL-DIDISKTVFHEPVMFNERIRPGNAHILCS 624 (1915)
Q Consensus 561 ~~V~sl~fsp~~~~d~~--~L~sgs-------------~DgtI~iWDl~~-~~~~~~~~~~~~~~~~~~~~~~~~~V~~l 624 (1915)
+.+.+++|+|+ ++ ++++++ .+|++.+|++.. +......... ...+...+.++
T Consensus 83 g~~~~~~~spd----g~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~--------~~~~~~~~~~~ 150 (365)
T 1jof_A 83 GHPRANDADTN----TRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNY--------EYQENTGIHGM 150 (365)
T ss_dssp SSGGGGCTTSC----CEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEE--------ECCTTCCEEEE
T ss_pred CCCccEEECCC----CCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeE--------EeCCCCcceEE
Confidence 34667889984 46 345553 689999999974 3321111100 01133568999
Q ss_pred EECCCCcEEEEEeC-CCeEEEEEecCCCCCceeEEec--cCCCCeeEEEEcCCCCEEEEEeC-CCcEEEEEcc--CCceE
Q psy9598 625 SFSPGGLFLATGSG-DHHVRVYKMDGVDSPLGILEVE--EHSDKVDSIQWSHSHLRFVSGSR-DGTALIWYYK--CSQWR 698 (1915)
Q Consensus 625 ~fspdg~~Lasgs~-Dg~I~IwDl~~~~~~~~i~~l~--~h~~~V~sl~fspdg~~L~sgs~-DG~I~IWDl~--~~~~~ 698 (1915)
+|+|+|++|+++.. ++.|.+|++........+..+. .|...+..++|+|+|++|++++. ++.|.+|++. ++...
T Consensus 151 ~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~ 230 (365)
T 1jof_A 151 VFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPV 230 (365)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred EECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEE
Confidence 99999998887654 6899999995212222222333 24567999999999999887774 7899999875 44432
Q ss_pred EeeecccccCCCCccccccccccc------cEEEEE-ECCCCCEEEEEEecCC-----eEEEEECC-CCceEE---EeeC
Q psy9598 699 FIRLDMNTCLPHTKETSDETNKKI------KVTMVA-WDASDRWVITAINFNF-----QIKIWDAF-NGDLVQ---VLKG 762 (1915)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~~~~~~~------~V~~va-~spdg~~L~t~s~~Dg-----~I~vwD~~-tg~~i~---~l~g 762 (1915)
...... ...+. ...++.. .+..++ |+|+|++|+++...++ .|.+|++. ++++.. .+..
T Consensus 231 ~~~~~~-~~~~~-----~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~ 304 (365)
T 1jof_A 231 YTHHSF-PLIPP-----GIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPT 304 (365)
T ss_dssp EEEEEE-ESSCT-----TCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEEC
T ss_pred EccceE-EcCCC-----CcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeec
Confidence 100000 00000 0011121 578899 9999999988765333 89999986 676554 2334
Q ss_pred CCCCeEEEEEccC--CCCEEEEEec-CceEEEEECCCC
Q psy9598 763 HTNEVFVLESHPF--DSRVLLSAGH-DGLIIIWDILSS 797 (1915)
Q Consensus 763 H~~~V~sl~~sp~--dg~~LaSgs~-DG~I~IWdl~s~ 797 (1915)
+...+..++|+|. ++++|++++. ++.|.||++...
T Consensus 305 ~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 305 PTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp SSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 5556678899995 5888888876 489999999765
|
| >3iu6_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; HET: OCS; 1.79A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=3.4e-17 Score=167.56 Aligned_cols=104 Identities=16% Similarity=0.253 Sum_probs=96.9
Q ss_pred chhhHHHHHHHHHHHHcCCC------CCCCCCCCCCCCCCCccccccCccchhhHHhhhcCCCCCCHHHHHHHHHHHHHH
Q psy9598 1530 PFNWKNECREVLETLWVCPD------SEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHN 1603 (1915)
Q Consensus 1530 ~~~~~~~~~~ll~~l~~~~~------s~~F~~pv~~~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~Dv~lif~N 1603 (1915)
+..++..+..|+..|+++.+ |.+|+.+|+++ |+||. ++||+|.+|++||..|.|.++++|..||.|||+|
T Consensus 5 ~~~lq~~l~~l~~~v~~~~De~GR~lsd~F~~LPsk~--pdYY~--k~Pi~l~~Ikkri~~~~Y~sld~f~~D~~lmf~N 80 (147)
T 3iu6_A 5 TLLIQELIHNLFVSVMSHQDDEGRCYSDSLAEIPAVD--PNFPN--KPPLTFDIIRKNVENNRYRRLDLFQEHMFEVLER 80 (147)
T ss_dssp CCHHHHHHHHHHHHHHTCBCTTSCBGGGGGTTCCSSC--TTSTT--SCCCCHHHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcCCCCCcchHHHhHCCCCC--ccccC--CCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 35677889999999999877 78999999988 89998 9999999999999999999999999999999999
Q ss_pred hhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy9598 1604 SRNYNQNKRSKIYIMTTRLSEFAEEHLRRLTVRWN 1638 (1915)
Q Consensus 1604 a~~yN~~~~s~i~~~a~~l~~~f~~~~~~~~~~~~ 1638 (1915)
|++||.++ |+||.+|..|+++|.+.++++...-+
T Consensus 81 Ar~yN~e~-S~IyeDAv~Lq~~f~~~r~eL~~~g~ 114 (147)
T 3iu6_A 81 ARRMNRTD-SEIYEDAVELQQFFIKIRDELCKNGE 114 (147)
T ss_dssp HHHHSCTT-SHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhCCCC-CHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 99999998 99999999999999999999987643
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.70 E-value=6.3e-16 Score=196.17 Aligned_cols=274 Identities=10% Similarity=0.059 Sum_probs=181.3
Q ss_pred CcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceecc-Ccc--ccccccCC
Q psy9598 540 KTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFH-EPV--MFNERIRP 616 (1915)
Q Consensus 540 gtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~-~~~--~~~~~~~~ 616 (1915)
+.|++|+.... .+...++.+++++. +.+|++++.+| |++|+............. ... ........
T Consensus 23 ~~vri~~~~~~-------~~~~~~n~lavs~~----~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (434)
T 2oit_A 23 KKVRIFDSPEE-------LPKERSSLLAVSNK----YGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVP 90 (434)
T ss_dssp CEEECSCCCSS-------CCCSCCBCEEEETT----TTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEEC
T ss_pred eeEEecCCccc-------cCCCCccEEEEecC----CCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCcccccc
Confidence 56888865311 13446788999984 47899999888 888876432110000000 000 00001123
Q ss_pred CCCceEEEEECCCCcEEE----EEeCCCeEEEEEecCC--------CCCceeEEeccCCCCeeEEEEcCC-CCEEEEEeC
Q psy9598 617 GNAHILCSSFSPGGLFLA----TGSGDHHVRVYKMDGV--------DSPLGILEVEEHSDKVDSIQWSHS-HLRFVSGSR 683 (1915)
Q Consensus 617 ~~~~V~~l~fspdg~~La----sgs~Dg~I~IwDl~~~--------~~~~~i~~l~~h~~~V~sl~fspd-g~~L~sgs~ 683 (1915)
+...|.+++|+|+|.+|+ +|+.|+.|+|||+... .....+..+.+|...|.+|+|+|+ +.+|++|+.
T Consensus 91 ~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~ 170 (434)
T 2oit_A 91 MKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLA 170 (434)
T ss_dssp CSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEET
T ss_pred CCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEEC
Confidence 456799999999999999 7888999999998542 111124556789999999999998 789999999
Q ss_pred CCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCC
Q psy9598 684 DGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGH 763 (1915)
Q Consensus 684 DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH 763 (1915)
||+|+|||++++..... ...|...|.+++|+|+|.+|++++. ||.|++||+. +.....+..|
T Consensus 171 Dg~v~iwD~~~~~~~~~----------------~~~~~~~v~~v~wspdg~~lasgs~-dg~v~iwd~~-~~~~~~~~~~ 232 (434)
T 2oit_A 171 DGSIAVLQVTETVKVCA----------------TLPSTVAVTSVCWSPKGKQLAVGKQ-NGTVVQYLPT-LQEKKVIPCP 232 (434)
T ss_dssp TSCEEEEEESSSEEEEE----------------EECGGGCEEEEEECTTSSCEEEEET-TSCEEEECTT-CCEEEEECCC
T ss_pred CCeEEEEEcCCCcceee----------------ccCCCCceeEEEEcCCCCEEEEEcC-CCcEEEEccC-CcccccccCC
Confidence 99999999988753221 1235678999999999999999998 9999999998 6666666554
Q ss_pred C-------CCeEEEEEccCCCCEEEE-EecCce------EEEEECCCCccccceeeeeeecC-----CCCcceEEEEEcC
Q psy9598 764 T-------NEVFVLESHPFDSRVLLS-AGHDGL------IIIWDILSSKQRGYKWFHNIVEG-----QGEGALFDGKWSP 824 (1915)
Q Consensus 764 ~-------~~V~sl~~sp~dg~~LaS-gs~DG~------I~IWdl~s~~~~~~~~~~~~~~~-----~~~~~V~~vafSp 824 (1915)
. ..|.+++|++ ++.++++ ++.||. +++|++..........+..+... ....+.+.+.+-+
T Consensus 233 ~~~~~~~~~~v~~v~w~~-~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~ 311 (434)
T 2oit_A 233 PFYESDHPVRVLDVLWIG-TYVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIE 311 (434)
T ss_dssp TTCCTTSCEEEEEEEEEE-TTEEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEG
T ss_pred cccCCCCceeEEEEEEec-CceEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhc
Confidence 3 3799999999 6666644 344543 89999986532111222222111 1222333344446
Q ss_pred CCCEEEEEe-CCCeEEEEeCC
Q psy9598 825 DGTTCALTD-SYGHLLVYGLG 844 (1915)
Q Consensus 825 dg~~Lasg~-~dG~I~Iwdl~ 844 (1915)
+.+++++++ ..+.|.|+...
T Consensus 312 dw~l~~v~s~~s~dv~vl~~~ 332 (434)
T 2oit_A 312 EWDLVLAASAASTEVSILARQ 332 (434)
T ss_dssp GGTEEEEEETTCSBCEEEEEC
T ss_pred cCCEEEEecCCCCceeEEEec
Confidence 777666654 34456666643
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.70 E-value=4.8e-15 Score=183.46 Aligned_cols=304 Identities=11% Similarity=0.060 Sum_probs=208.7
Q ss_pred CCCEEEEEE------CCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEe----------CCCcEEEEECCCC
Q psy9598 487 LGEVIVTGA------DDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGT----------VDKTIRIWNLQTL 550 (1915)
Q Consensus 487 dg~~LaTGs------~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs----------~DgtIrVWDl~tg 550 (1915)
+++++++.. .|+.|.+||..+++.+.++..+..+ .|+|+|||++|++++ .+++|.+||+.++
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~ 91 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL 91 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC
Confidence 455555543 3679999999999999999877655 899999999999886 3678999999999
Q ss_pred ceEEEeecC------CCCeEEEEeccCccCCCcEEEEEeC--CCeEEEEecccCccccc-eeccCccccccccCCCCCce
Q psy9598 551 APISVLVGH------QGIITGVNFCPLEVNGFNYLASTST--DGCIGFWKYKLDIDISK-TVFHEPVMFNERIRPGNAHI 621 (1915)
Q Consensus 551 ~~~~~l~~h------~~~V~sl~fsp~~~~d~~~L~sgs~--DgtI~iWDl~~~~~~~~-~~~~~~~~~~~~~~~~~~~V 621 (1915)
+.+..+..+ ......++|+|+ +++|+++.. +++|.+||+.++..+.. +... ..
T Consensus 92 ~~~~~i~~~~~~~~~g~~p~~i~~spd----g~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~--------------~~ 153 (361)
T 2oiz_A 92 TFEKEISLPPKRVQGLNYDGLFRQTTD----GKFIVLQNASPATSIGIVDVAKGDYVEDVTAAA--------------GC 153 (361)
T ss_dssp CEEEEEEECTTBCCBCCCGGGEEECTT----SSEEEEEEESSSEEEEEEETTTTEEEEEEGGGT--------------TE
T ss_pred cEEEEEEcCccccccCCCcceEEECCC----CCEEEEECCCCCCeEEEEECCCCcEEEEEecCC--------------Cc
Confidence 998887642 345678999994 478887764 68999999998754333 2111 12
Q ss_pred EEEEECCCC-cEEEEEeCCCeEEEEEecCCCCCcee----EEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCc
Q psy9598 622 LCSSFSPGG-LFLATGSGDHHVRVYKMDGVDSPLGI----LEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQ 696 (1915)
Q Consensus 622 ~~l~fspdg-~~Lasgs~Dg~I~IwDl~~~~~~~~i----~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~ 696 (1915)
..+.+.|++ ..+++.+.||.+.+|++......... ..+..+..++ .+.+++++..++..+.+|.|.+||+....
T Consensus 154 ~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~ 232 (361)
T 2oiz_A 154 WSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDE 232 (361)
T ss_dssp EEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSS
T ss_pred ceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCC
Confidence 235567765 57788889999999988432221100 0112222222 23346777788888889999999987654
Q ss_pred eEEeee-cccccCCCCccccccccccccEEEEEECCCCCEEEEEEe----------cCCeEEEEECCCCceEEEeeCCCC
Q psy9598 697 WRFIRL-DMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAIN----------FNFQIKIWDAFNGDLVQVLKGHTN 765 (1915)
Q Consensus 697 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~----------~Dg~I~vwD~~tg~~i~~l~gH~~ 765 (1915)
...... .... .. .............++|++++..++++.. ..+.|.+||+.+++.+..+..+.
T Consensus 233 ~~~~~~~~~~~---~~--~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~- 306 (361)
T 2oiz_A 233 VKVDGPWSLLN---DE--DKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD- 306 (361)
T ss_dssp CEEEEEEESCC---HH--HHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT-
T ss_pred ceecccccccC---cc--ccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC-
Confidence 222110 0000 00 0000000011123689999998887754 13489999999999999999887
Q ss_pred CeEEEEEccCCCCEEEEEecCceEEEEECCCC--ccccceeeeeeecCCCCcceEEEEEcCCCC
Q psy9598 766 EVFVLESHPFDSRVLLSAGHDGLIIIWDILSS--KQRGYKWFHNIVEGQGEGALFDGKWSPDGT 827 (1915)
Q Consensus 766 ~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~--~~~~~~~~~~~~~~~~~~~V~~vafSpdg~ 827 (1915)
+.+|+|+| ++++|++++. ++|.|||+.++ +. +..+. ........++|+|+|.
T Consensus 307 -p~~ia~sp-dg~~l~v~n~-~~v~v~D~~t~~l~~--~~~i~-----~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 307 -ALSMTIDQ-QRNLMLTLDG-GNVNVYDISQPEPKL--LRTIE-----GAAEASLQVQFHPVGG 360 (361)
T ss_dssp -CCEEEEET-TTTEEEEECS-SCEEEEECSSSSCEE--EEEET-----TSCSSEEEEEECCCSC
T ss_pred -eeEEEECC-CCCEEEEeCC-CeEEEEECCCCccee--eEEec-----cCCCCcEEEEecCCCC
Confidence 99999999 9999998887 99999999998 55 44432 1234567899999985
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.69 E-value=8.8e-16 Score=191.14 Aligned_cols=305 Identities=10% Similarity=0.041 Sum_probs=200.6
Q ss_pred EEEEEEcCCCCEEEEEECC---CcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEE
Q psy9598 479 VFCVLFDKLGEVIVTGADD---LLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISV 555 (1915)
Q Consensus 479 V~~vafspdg~~LaTGs~D---g~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~ 555 (1915)
+.+++|+|+|++|+.++.. ..|.+|++.+++......++...+.++.|+|||++|+.++.++.|.+||+.++.....
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~ 117 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVI 117 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEE
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEE
Confidence 6788999999998877653 3788999988876554444433334488999999999999999999999999887666
Q ss_pred eecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEE
Q psy9598 556 LVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLAT 635 (1915)
Q Consensus 556 l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Las 635 (1915)
+..+.. |++. +..|+..+.++...+|.. .+.|+|++..++.
T Consensus 118 ~~~~~~------~~~~----g~~l~~~~~~~~~~~~~~-----------------------------~~~~spdg~~~~~ 158 (396)
T 3c5m_A 118 YTVDEE------WKGY----GTWVANSDCTKLVGIEIL-----------------------------KRDWQPLTSWEKF 158 (396)
T ss_dssp EECCTT------EEEE----EEEEECTTSSEEEEEEEE-----------------------------GGGCCCCCSHHHH
T ss_pred Eecccc------cCCC----CCEEEeccCCcccccccc-----------------------------ccccCCCCcceee
Confidence 654544 5553 366776666665555531 1236677777665
Q ss_pred E-----eCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcC-CCCEEEEEeCC------CcEEEEEccCCceEEeeec
Q psy9598 636 G-----SGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSH-SHLRFVSGSRD------GTALIWYYKCSQWRFIRLD 703 (1915)
Q Consensus 636 g-----s~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fsp-dg~~L~sgs~D------G~I~IWDl~~~~~~~~~~~ 703 (1915)
+ ..+..|.+||+.+.. ...+..+...+..+.|+| ++..|+.++.+ ..|.+||+..+....+.
T Consensus 159 ~~~~~~~~~~~l~~~d~~~g~----~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~-- 232 (396)
T 3c5m_A 159 AEFYHTNPTCRLIKVDIETGE----LEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIK-- 232 (396)
T ss_dssp HHHHHTCCCEEEEEEETTTCC----EEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESS--
T ss_pred eeeccCCCcceEEEEECCCCc----EEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEee--
Confidence 4 356789999984322 222335677899999999 78877766544 35777877655422110
Q ss_pred ccccCCCCccccccccccccEEEEEECCCCCEEEEEEecC----CeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCE
Q psy9598 704 MNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFN----FQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRV 779 (1915)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~D----g~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~ 779 (1915)
.......+..++|+|+|++|+.++..+ +.|++||+.+++........ . +. +.|+|.++.+
T Consensus 233 -------------~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~-~-~~-~~~s~~dg~~ 296 (396)
T 3c5m_A 233 -------------EHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMP-P-CS-HLMSNFDGSL 296 (396)
T ss_dssp -------------CCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECC-S-EE-EEEECSSSSE
T ss_pred -------------ccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCC-C-CC-CCccCCCCce
Confidence 000123578899999999888776522 45999999988765433222 2 33 7888756677
Q ss_pred EEEEe----------------cCceEEEEECCCCccccceeeeeeecC------CCCcceEEEEEcCCCCEEEEEeC-CC
Q psy9598 780 LLSAG----------------HDGLIIIWDILSSKQRGYKWFHNIVEG------QGEGALFDGKWSPDGTTCALTDS-YG 836 (1915)
Q Consensus 780 LaSgs----------------~DG~I~IWdl~s~~~~~~~~~~~~~~~------~~~~~V~~vafSpdg~~Lasg~~-dG 836 (1915)
|++++ .++.|++||+.++.. .. +...... .....+..++|+|||+.|++++. +|
T Consensus 297 l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~--~~-l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~ 373 (396)
T 3c5m_A 297 MVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSA--QK-LCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEG 373 (396)
T ss_dssp EEEEECCC----------CCCCCCEEEEEETTTTBC--CE-EEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTS
T ss_pred EEEecCCcceeeccccccccCCCCcEEEEecccCce--EE-ccCCCCccccccccccCCCCCceEccCCCeEEEEecCCC
Confidence 77654 347899999988765 22 2100000 00002566899999999887764 45
Q ss_pred e--EEEEeCCCCc
Q psy9598 837 H--LLVYGLGGFK 847 (1915)
Q Consensus 837 ~--I~Iwdl~s~~ 847 (1915)
. |+++++.++.
T Consensus 374 ~~~l~~~~~~~~~ 386 (396)
T 3c5m_A 374 VPAIYIADVPESY 386 (396)
T ss_dssp SCEEEEEECCTTC
T ss_pred CceEEEEEEcccc
Confidence 4 4445555543
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.66 E-value=4.3e-15 Score=201.96 Aligned_cols=305 Identities=10% Similarity=0.041 Sum_probs=198.7
Q ss_pred CCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCCCC-----eEEEEeccCccCCCcEEEEEeCC--------
Q psy9598 519 GEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGI-----ITGVNFCPLEVNGFNYLASTSTD-------- 585 (1915)
Q Consensus 519 ~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~-----V~sl~fsp~~~~d~~~L~sgs~D-------- 585 (1915)
....+++|+|||.+|+++ |++|++||+.++.+...+.+|... ..+++|+| ++++|++++.+
T Consensus 17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sp----dg~~l~~~~~~~~~~r~~~ 90 (740)
T 4a5s_A 17 LKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISP----DGQFILLEYNYVKQWRHSY 90 (740)
T ss_dssp CCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECT----TSSEEEEEEEEEECSSSCE
T ss_pred ccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECC----CCCEEEEEECCeeeEEEcc
Confidence 346689999999999886 999999999999998888887643 23478899 45888888876
Q ss_pred -CeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCC
Q psy9598 586 -GCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSD 664 (1915)
Q Consensus 586 -gtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~ 664 (1915)
+.+.+||+.++.... +..+...+...+|||||+.||.+ .++.|++|++.+.. .. ..+..++..
T Consensus 91 ~~~~~~~d~~~~~~~~-------------l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~-~~-~lt~~g~~~ 154 (740)
T 4a5s_A 91 TASYDIYDLNKRQLIT-------------EERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLP-SY-RITWTGKED 154 (740)
T ss_dssp EEEEEEEETTTTEECC-------------SSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSC-CE-ECCSCCBTT
T ss_pred ceEEEEEECCCCcEEE-------------cccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCc-eE-EEcCCCCcc
Confidence 566799999875321 12334678999999999999988 46899999985432 11 112223332
Q ss_pred Ce-----------------eEEEEcCCCCEEEEEeCCCc-EEEEE-----------------------------------
Q psy9598 665 KV-----------------DSIQWSHSHLRFVSGSRDGT-ALIWY----------------------------------- 691 (1915)
Q Consensus 665 ~V-----------------~sl~fspdg~~L~sgs~DG~-I~IWD----------------------------------- 691 (1915)
.+ .++.|||||+.|+.++.|.+ +.+|+
T Consensus 155 ~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d 234 (740)
T 4a5s_A 155 IIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVN 234 (740)
T ss_dssp TEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEE
T ss_pred ceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEE
Confidence 22 35899999999998875443 55554
Q ss_pred ccC---C---ceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEec---CCeEEEEECCCCc----eE-
Q psy9598 692 YKC---S---QWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINF---NFQIKIWDAFNGD----LV- 757 (1915)
Q Consensus 692 l~~---~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~---Dg~I~vwD~~tg~----~i- 757 (1915)
+.+ + ....+. ......++...+..++|+|||+.++..... +..|++||+.+++ +.
T Consensus 235 ~~~~~~~~~~~~~~l~-----------~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~ 303 (740)
T 4a5s_A 235 TDSLSSVTNATSIQIT-----------APASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLV 303 (740)
T ss_dssp TTSCCSSSCCCEEEEC-----------CCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECG
T ss_pred CCCCCCCCcceEEEec-----------CCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeE
Confidence 333 2 111000 000001256678999999999977766542 2379999999887 22
Q ss_pred -EEe--eCCCCCeE-----EEEEccCCCCEEE-EEec-C--ceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCC
Q psy9598 758 -QVL--KGHTNEVF-----VLESHPFDSRVLL-SAGH-D--GLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPD 825 (1915)
Q Consensus 758 -~~l--~gH~~~V~-----sl~~sp~dg~~La-Sgs~-D--G~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpd 825 (1915)
..+ .+|.+.|. .+.|+| ||+.|+ ..+. + ..|++||+.++.. . .+. .+...|..+. ++|
T Consensus 304 ~~~l~~~~~~~~v~~~~~~~p~fsp-DG~~l~~~~s~~~G~~~l~~~~~~~~~~--~-~lT-----~g~~~v~~~~-~~d 373 (740)
T 4a5s_A 304 ARQHIEMSTTGWVGRFRPSEPHFTL-DGNSFYKIISNEEGYRHICYFQIDKKDC--T-FIT-----KGTWEVIGIE-ALT 373 (740)
T ss_dssp GGCEEEECSSSCSSSSSCCCCEECT-TSSEEEEEEECTTSCEEEEEEETTCSSC--E-ESC-----CSSSCEEEEE-EEC
T ss_pred EEEeeeccCCceEccCcCCCceEcC-CCCEEEEEEEcCCCceEEEEEECCCCce--E-ecc-----cCCEEEEEEE-EEe
Confidence 222 45766554 788999 888776 6653 3 4688899987665 2 111 2234455443 244
Q ss_pred CCEEEEEeCC-------CeEEEEeCCCCcccccCC----------CceeecCCCCeee
Q psy9598 826 GTTCALTDSY-------GHLLVYGLGGFKRPQNIP----------RELFFHTDYRTLN 866 (1915)
Q Consensus 826 g~~Lasg~~d-------G~I~Iwdl~s~~~~~~l~----------~~~~F~~d~~~Lv 866 (1915)
+..|+..+.. .+|+..++.++.....+. ....|++|++.++
T Consensus 374 ~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~ 431 (740)
T 4a5s_A 374 SDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQ 431 (740)
T ss_dssp SSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEE
T ss_pred CCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEE
Confidence 7766665543 256666666543221111 2567888888665
|
| >3iu6_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; HET: OCS; 1.79A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=3.8e-16 Score=159.91 Aligned_cols=101 Identities=17% Similarity=0.271 Sum_probs=94.7
Q ss_pred hhHHHHHHHHHHHHhcCCC------CCCCCCCCCCCCCCCccccCCCcCCHHHHHHHhcCCCCCCHHHHHHHHHHHHHHH
Q psy9598 116 FNWKNECREVLETLWVCPD------SEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNS 189 (1915)
Q Consensus 116 ~~~~~~~~~il~~l~~~~~------~~~F~~pvd~~~~pdY~~iIk~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~Lif~N~ 189 (1915)
..++..+..|+..|+++.+ +.+|++.+++. |+||+ ++||+|.+|++||+.+.|.++++|..||.|||.||
T Consensus 6 ~~lq~~l~~l~~~v~~~~De~GR~lsd~F~~LPsk~--pdYY~--k~Pi~l~~Ikkri~~~~Y~sld~f~~D~~lmf~NA 81 (147)
T 3iu6_A 6 LLIQELIHNLFVSVMSHQDDEGRCYSDSLAEIPAVD--PNFPN--KPPLTFDIIRKNVENNRYRRLDLFQEHMFEVLERA 81 (147)
T ss_dssp CHHHHHHHHHHHHHHTCBCTTSCBGGGGGTTCCSSC--TTSTT--SCCCCHHHHHHHHHTTCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcCCCCCcchHHHhHCCCCC--ccccC--CCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 4677889999999999876 69999999977 89998 99999999999999999999999999999999999
Q ss_pred hhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q psy9598 190 RNYNQNKRSKIYIMTTRLSEFAEEHLRRLTVR 221 (1915)
Q Consensus 190 ~~yN~~~~s~i~~~a~~l~~~f~~~~~~~~~~ 221 (1915)
++||.++ |.||.+|..|+++|.+.+.++-..
T Consensus 82 r~yN~e~-S~IyeDAv~Lq~~f~~~r~eL~~~ 112 (147)
T 3iu6_A 82 RRMNRTD-SEIYEDAVELQQFFIKIRDELCKN 112 (147)
T ss_dssp HHHSCTT-SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCC-CHHHHHHHHHHHHHHHHHHHHhhC
Confidence 9999987 999999999999999999998776
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.65 E-value=6.1e-15 Score=197.66 Aligned_cols=299 Identities=10% Similarity=-0.060 Sum_probs=199.9
Q ss_pred EecCCCCcEEEEEEcCCCCEEEEE--ECCCcEEEEECCCCcEEEEEeCCCCCEE---------EEEEe--CCCCE-EEEE
Q psy9598 471 VNLGHLSAVFCVLFDKLGEVIVTG--ADDLLIKLWRARDGKLLATLRGCSGEIS---------DIAID--NRNIL-LAAG 536 (1915)
Q Consensus 471 ~l~gH~~~V~~vafspdg~~LaTG--s~Dg~I~IWd~~tg~~~~~l~gH~~~I~---------~Lafs--pdg~~-LaSg 536 (1915)
.+.+|...|.+++|++++-+++++ +.++...||....+.....+.+|...|. ...|+ |||+. |+.+
T Consensus 18 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~ 97 (662)
T 3azo_A 18 LVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFT 97 (662)
T ss_dssp HHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEE
T ss_pred HHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEE
Confidence 456899999999999887666766 5578999999665666677777777766 66676 99998 7765
Q ss_pred eC-CCcEEEEECC--C-CceEEEeec-----CCCCeEEEEeccCccCCCcEEEEEeCC----------CeEEEEeccc--
Q psy9598 537 TV-DKTIRIWNLQ--T-LAPISVLVG-----HQGIITGVNFCPLEVNGFNYLASTSTD----------GCIGFWKYKL-- 595 (1915)
Q Consensus 537 s~-DgtIrVWDl~--t-g~~~~~l~~-----h~~~V~sl~fsp~~~~d~~~L~sgs~D----------gtI~iWDl~~-- 595 (1915)
+. +..|.+|++. + +. ...+.. |...+.+++|+|+ ++.|++++.+ ..|.+||+.+
T Consensus 98 ~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~spD----g~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 172 (662)
T 3azo_A 98 HFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLPE----RGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSA 172 (662)
T ss_dssp BTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEETT----TTEEEEEEEEECSSSTTCEEEEEEEEETTSTT
T ss_pred ECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECCC----CCEEEEEEecccCCCCCCceeEEEEEECCCCc
Confidence 53 5667777765 3 43 455555 6778899999994 5888888876 5899999887
Q ss_pred ----CccccceeccCccccccccC-CCCCceEEEEECCCCcEEEEEeCC--------CeEEEEEecCCCCC-ceeEEecc
Q psy9598 596 ----DIDISKTVFHEPVMFNERIR-PGNAHILCSSFSPGGLFLATGSGD--------HHVRVYKMDGVDSP-LGILEVEE 661 (1915)
Q Consensus 596 ----~~~~~~~~~~~~~~~~~~~~-~~~~~V~~l~fspdg~~Lasgs~D--------g~I~IwDl~~~~~~-~~i~~l~~ 661 (1915)
+.. .. +. .+...+..++|||||++|+.++.+ ..|.+||+.+.... .......+
T Consensus 173 ~~~~~~~-~~------------l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~ 239 (662)
T 3azo_A 173 AADRSAV-RE------------LSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGG 239 (662)
T ss_dssp TTCGGGS-EE------------SSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEE
T ss_pred cccCCce-eE------------EEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCC
Confidence 321 11 11 223567788999999999987755 37999999522211 22222345
Q ss_pred CCCCeeEEEEcCCCCEEEEEeCCC--cEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEE
Q psy9598 662 HSDKVDSIQWSHSHLRFVSGSRDG--TALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITA 739 (1915)
Q Consensus 662 h~~~V~sl~fspdg~~L~sgs~DG--~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~ 739 (1915)
|...+..++|+|+|.++++++.+| .|.+||+.++++..+...... .........+..++|++++.+++++
T Consensus 240 ~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~--------~~~p~w~~~~~~~~~~~~~~~~~~~ 311 (662)
T 3azo_A 240 PEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEE--------FAGPLWTPGMRWFAPLANGLIAVVH 311 (662)
T ss_dssp TTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSB--------SSCCCCSTTCCSEEECTTSCEEEEE
T ss_pred CCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeeccccccc--------ccCccccccCceEeEeCCCEEEEEE
Confidence 678899999999999888888888 555566656654432210000 0000011124568999999987776
Q ss_pred EecCCeEEEE--ECCCCceEEEeeCCCCCeEEE-EEccCCCCEEEEEecCc--eEEEEECCCCcc
Q psy9598 740 INFNFQIKIW--DAFNGDLVQVLKGHTNEVFVL-ESHPFDSRVLLSAGHDG--LIIIWDILSSKQ 799 (1915)
Q Consensus 740 s~~Dg~I~vw--D~~tg~~i~~l~gH~~~V~sl-~~sp~dg~~LaSgs~DG--~I~IWdl~s~~~ 799 (1915)
.. +.++|| |+.++. +..+..|...+..+ ++++ +.-++++++.+. .|.+||+.+++.
T Consensus 312 ~~--~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~s~~~-~~~~~~~~~~~~~~~i~~~d~~~g~~ 372 (662)
T 3azo_A 312 GK--GAAVLGILDPESGE-LVDAAGPWTEWAATLTVSG-TRAVGVAASPRTAYEVVELDTVTGRA 372 (662)
T ss_dssp BS--SSCEEEEEETTTTE-EEECCSSCCEEEEEEEEET-TEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred Ec--CccEEEEEECCCCc-EEEecCCCCeEEEEEecCC-CEEEEEEcCCCCCCEEEEEECCCCce
Confidence 54 777787 665555 67788888878777 5543 323344445554 455566666654
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.65 E-value=2.9e-14 Score=176.63 Aligned_cols=282 Identities=10% Similarity=0.021 Sum_probs=182.7
Q ss_pred EEEEEeCC--CcEEEEEC--CCCceEEE--ee-cCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecc-cCcccccee
Q psy9598 532 LLAAGTVD--KTIRIWNL--QTLAPISV--LV-GHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYK-LDIDISKTV 603 (1915)
Q Consensus 532 ~LaSgs~D--gtIrVWDl--~tg~~~~~--l~-~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~-~~~~~~~~~ 603 (1915)
+|+.|+.. +.|.+|++ .++..... .. ++...+..++|+|+ +++|++++.+ .|.+|++. ++.......
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spd----g~~l~~~~~~-~v~~~~~~~~g~~~~~~~ 78 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHE----RKNIYGAAMK-KWSSFAVKSPTEIVHEAS 78 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTT----SSEEEEEEBT-EEEEEEEEETTEEEEEEE
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCC----CCEEEEEccc-eEEEEEECCCCCEEEeeE
Confidence 35556543 46777665 55654322 11 23457889999994 4888888888 99999987 553211111
Q ss_pred ccCccccccccCCCCCceEEEEECCCCcE--EEEEe-------------CCCeEEEEEecCCCCCce-eEEec-cCCCCe
Q psy9598 604 FHEPVMFNERIRPGNAHILCSSFSPGGLF--LATGS-------------GDHHVRVYKMDGVDSPLG-ILEVE-EHSDKV 666 (1915)
Q Consensus 604 ~~~~~~~~~~~~~~~~~V~~l~fspdg~~--Lasgs-------------~Dg~I~IwDl~~~~~~~~-i~~l~-~h~~~V 666 (1915)
.. .+ +.+.+++|+|+|++ +++++ .+|.+.+|++........ +..+. .+...+
T Consensus 79 ~~----------~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~ 147 (365)
T 1jof_A 79 HP----------IG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGI 147 (365)
T ss_dssp EE----------CC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCE
T ss_pred ee----------cC-CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcc
Confidence 00 00 12445889999994 45553 689999999953222111 11111 255679
Q ss_pred eEEEEcCCCCEEEEEe-CCCcEEEEEcc-CCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCC
Q psy9598 667 DSIQWSHSHLRFVSGS-RDGTALIWYYK-CSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNF 744 (1915)
Q Consensus 667 ~sl~fspdg~~L~sgs-~DG~I~IWDl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg 744 (1915)
.+++|+|+|++|+++. .++.|.+|++. +++...... . ....+...+..++|+|+|++|++++..++
T Consensus 148 ~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~-~-----------~~~~~g~~p~~~~~spdg~~l~v~~~~~~ 215 (365)
T 1jof_A 148 HGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGS-V-----------DAPDPGDHPRWVAMHPTGNYLYALMEAGN 215 (365)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEE-E-----------ECSSTTCCEEEEEECTTSSEEEEEETTTT
T ss_pred eEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeee-E-----------ecCCCCCCCCEeEECCCCCEEEEEECCCC
Confidence 9999999999888766 46899999998 665432110 0 00012345788999999999998876578
Q ss_pred eEEEEECC--CCceEE---Eee-------CCCC------CeEEEE-EccCCCCEEEEEecC-c-----eEEEEECC-CCc
Q psy9598 745 QIKIWDAF--NGDLVQ---VLK-------GHTN------EVFVLE-SHPFDSRVLLSAGHD-G-----LIIIWDIL-SSK 798 (1915)
Q Consensus 745 ~I~vwD~~--tg~~i~---~l~-------gH~~------~V~sl~-~sp~dg~~LaSgs~D-G-----~I~IWdl~-s~~ 798 (1915)
.|.+|++. ++++.. .+. +|.. .+..++ |+| ++++|++++.+ + +|.+|++. ++.
T Consensus 216 ~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~sp-dG~~l~v~~~~~~~~~~~~i~v~~~~~~g~ 294 (365)
T 1jof_A 216 RICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTF-SGKYMFASSRANKFELQGYIAGFKLRDCGS 294 (365)
T ss_dssp EEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECT-TSSEEEEEEEESSTTSCCEEEEEEECTTSC
T ss_pred eEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECC-CCCEEEEECCCCCCCCCCeEEEEEECCCCC
Confidence 99999765 566532 222 2232 588999 999 99888776543 2 89999996 454
Q ss_pred cccceeeeeeecCCCCcceEEEEEcC---CCCEEEEEeCC-CeEEEEeCCCC
Q psy9598 799 QRGYKWFHNIVEGQGEGALFDGKWSP---DGTTCALTDSY-GHLLVYGLGGF 846 (1915)
Q Consensus 799 ~~~~~~~~~~~~~~~~~~V~~vafSp---dg~~Lasg~~d-G~I~Iwdl~s~ 846 (1915)
. .. +..... .+...+..++|+| ||++|++++.+ +.|.||++...
T Consensus 295 ~--~~-~~~~~~-~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 295 I--EK-QLFLSP-TPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp E--EE-EEEEEE-CSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred E--EE-eeeeee-cCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 3 21 110111 1223456789999 89999999864 89999998765
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=3.7e-13 Score=175.31 Aligned_cols=346 Identities=11% Similarity=0.031 Sum_probs=235.9
Q ss_pred cCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECC--CCceEEEeecCCCC
Q psy9598 485 DKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQ--TLAPISVLVGHQGI 562 (1915)
Q Consensus 485 spdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~--tg~~~~~l~~h~~~ 562 (1915)
++.+.++++...++.|.+||..+++.+.++... ..+.++.|+|||++|++++.|+.|.+||+. +++.+..+.... .
T Consensus 164 d~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~-~ 241 (567)
T 1qks_A 164 DLENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS-E 241 (567)
T ss_dssp CGGGEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS-E
T ss_pred CCCceEEEEeCCCCeEEEEECCCCeEEEEEeCC-CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC-C
Confidence 345567777788999999999999999988743 357799999999999999999999999996 888888876543 4
Q ss_pred eEEEEec----cCccCCCcEEEEEe-CCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCc-EEEEE
Q psy9598 563 ITGVNFC----PLEVNGFNYLASTS-TDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGL-FLATG 636 (1915)
Q Consensus 563 V~sl~fs----p~~~~d~~~L~sgs-~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~-~Lasg 636 (1915)
...++|+ |+ ++++++++ .+++|.+||..+...+..+...........+. ....+..+.+++++. ++++.
T Consensus 242 P~~ia~s~~~~pD----Gk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~-p~~rva~i~~s~~~~~~vv~~ 316 (567)
T 1qks_A 242 ARSIETSKMEGWE----DKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYH-PEPRVAAILASHYRPEFIVNV 316 (567)
T ss_dssp EEEEEECCSTTCT----TTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEE-SCCCEEEEEECSSSSEEEEEE
T ss_pred CceeEEccccCCC----CCEEEEEEccCCeEEEEECCCCcEEEEEecccccccccccc-CCCceEEEEEcCCCCEEEEEe
Confidence 5799999 53 45655554 56999999988876655443321000000000 012577888888755 45555
Q ss_pred eCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEe-CCCcEEEEEccCCceEEeeecccccCCCCcccc
Q psy9598 637 SGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGS-RDGTALIWYYKCSQWRFIRLDMNTCLPHTKETS 715 (1915)
Q Consensus 637 s~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs-~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~ 715 (1915)
...|.|.++|..... ...+..+ .......++.|+|+|++|++++ .++.|.+||+.+++..... ...
T Consensus 317 ~~~g~v~~vd~~~~~-~~~v~~i-~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i-~vg---------- 383 (567)
T 1qks_A 317 KETGKILLVDYTDLN-NLKTTEI-SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIE-DTG---------- 383 (567)
T ss_dssp TTTTEEEEEETTCSS-EEEEEEE-ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEE-ECS----------
T ss_pred cCCCeEEEEecCCCc-cceeeee-eccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEE-ecc----------
Confidence 667999999984322 1222222 2344577889999999887665 6789999999988754322 110
Q ss_pred ccccccc-cEEEEEECCCCCEEEEEE-ecCCeEEEEECCC-------CceEEEeeCCCCCeEEEEEccCCCCEEEEEec-
Q psy9598 716 DETNKKI-KVTMVAWDASDRWVITAI-NFNFQIKIWDAFN-------GDLVQVLKGHTNEVFVLESHPFDSRVLLSAGH- 785 (1915)
Q Consensus 716 ~~~~~~~-~V~~va~spdg~~L~t~s-~~Dg~I~vwD~~t-------g~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~- 785 (1915)
....|.+ .+. + ++|++..+++++ ..++.|.|+|..+ .+.+.++.+....-..|.+|| ++++|.+...
T Consensus 384 g~~Phpg~g~~-~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p-~~~~l~v~~~~ 460 (567)
T 1qks_A 384 GQTPHPGRGAN-F-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHP-NSQYLYVDATL 460 (567)
T ss_dssp SSSBCCTTCEE-E-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCT-TCSEEEEECTT
T ss_pred CcCCCCcccee-e-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCC-CCCeEEEecCC
Confidence 0111221 222 2 578766555444 2368999999988 678888886654445677899 8888877652
Q ss_pred ------CceEEEEECCCC-----ccccceeeeee---ecCCCCcceEEEEEcCCCCEEEEEe-----CCCeEEEEeCCCC
Q psy9598 786 ------DGLIIIWDILSS-----KQRGYKWFHNI---VEGQGEGALFDGKWSPDGTTCALTD-----SYGHLLVYGLGGF 846 (1915)
Q Consensus 786 ------DG~I~IWdl~s~-----~~~~~~~~~~~---~~~~~~~~V~~vafSpdg~~Lasg~-----~dG~I~Iwdl~s~ 846 (1915)
.++|.|+|+.+. .. ....+... -.+.+...+..+.|+++|..+.++. .++.|.|+|..++
T Consensus 461 ~~~~~~~~~v~v~d~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~ 539 (567)
T 1qks_A 461 NPEAEISGSVAVFDIKAMTGDGSDP-EFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTL 539 (567)
T ss_dssp CSSHHHHTCEEEEEGGGCCCSSSCC-CEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTT
T ss_pred CCCcccCceEEEEECCcccccccCC-CcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCc
Confidence 459999999876 21 01222100 0012335788999999999887774 3789999999999
Q ss_pred cccccCCC
Q psy9598 847 KRPQNIPR 854 (1915)
Q Consensus 847 ~~~~~l~~ 854 (1915)
+....++.
T Consensus 540 ~~~~~i~~ 547 (567)
T 1qks_A 540 ELKHVIKD 547 (567)
T ss_dssp EEEEEECC
T ss_pred eEEEEeCC
Confidence 88777765
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.59 E-value=2e-13 Score=168.83 Aligned_cols=289 Identities=9% Similarity=-0.038 Sum_probs=198.1
Q ss_pred CCCeEEEecccCCceeeeEEecCCCCcEEEEEEcCCCCEEEEEEC----------CCcEEEEECCCCcEEEEEeCC----
Q psy9598 452 LSRSLMISSHKYSNLRQHYVNLGHLSAVFCVLFDKLGEVIVTGAD----------DLLIKLWRARDGKLLATLRGC---- 517 (1915)
Q Consensus 452 ~d~~~~i~~~~~~~~~~~~~l~gH~~~V~~vafspdg~~LaTGs~----------Dg~I~IWd~~tg~~~~~l~gH---- 517 (1915)
.++.+.+++... .++..++..+..+ .++|+|+|++|++++. ++.|.+||+.+++.+.++..+
T Consensus 29 ~d~~v~v~D~~t--~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~ 104 (361)
T 2oiz_A 29 TESRVHVYDYTN--GKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRV 104 (361)
T ss_dssp GGCEEEEEETTT--CCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBC
T ss_pred ccCeEEEEECCC--CeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCcccc
Confidence 355677775433 3344566666555 8999999999999873 678999999999999887643
Q ss_pred --CCCEEEEEEeCCCCEEEEEeC--CCcEEEEECCCCceEEE-eecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEe
Q psy9598 518 --SGEISDIAIDNRNILLAAGTV--DKTIRIWNLQTLAPISV-LVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWK 592 (1915)
Q Consensus 518 --~~~I~~Lafspdg~~LaSgs~--DgtIrVWDl~tg~~~~~-l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWD 592 (1915)
......|+|+|+|++|+++.. +++|.|||+.+++.+.. +.. . ....+.+.|.+ ...+++.+.||.+.+|+
T Consensus 105 ~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~-~-~~~~v~~~p~~---~~~~~~~~~dg~~~~v~ 179 (361)
T 2oiz_A 105 QGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAA-A-GCWSVIPQPNR---PRSFMTICGDGGLLTIN 179 (361)
T ss_dssp CBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGG-T-TEEEEEECTTS---SSEEEEEETTSSEEEEE
T ss_pred ccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecC-C-CcceeEEcCCC---CeeEEEECCCCcEEEEE
Confidence 345678999999999998864 68999999999988877 542 2 22345667743 36788899999999999
Q ss_pred ccc-CccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEecc------CC--
Q psy9598 593 YKL-DIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEE------HS-- 663 (1915)
Q Consensus 593 l~~-~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~------h~-- 663 (1915)
+.. +....... . ...+..+... ..+.+++++..++..+.++.|.++|+.... ...+..+.- +.
T Consensus 180 ~~~~g~~~~~~~--~----~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~-~~~~~~~~~~~~~~~~~~~ 251 (361)
T 2oiz_A 180 LGEDGKVASQSR--S----KQMFSVKDDP-IFIAPALDKDKAHFVSYYGNVYSADFSGDE-VKVDGPWSLLNDEDKAKNW 251 (361)
T ss_dssp ECTTSSEEEEEE--C----CCCSCTTTSC-BCSCCEECSSEEEEEBTTSEEEEEECSSSS-CEEEEEEESCCHHHHHTTC
T ss_pred ECCCCcEeeecc--c----cceEcCCCCc-eEEEecccCCEEEEEeCCCeEEEEEecCCC-ceecccccccCcccccccc
Confidence 865 32211100 0 0011111111 123345677777777888999999984321 111111110 01
Q ss_pred --CCeeEEEEcCCCCEEEEEeC-----------CCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEEC
Q psy9598 664 --DKVDSIQWSHSHLRFVSGSR-----------DGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWD 730 (1915)
Q Consensus 664 --~~V~sl~fspdg~~L~sgs~-----------DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~s 730 (1915)
.....++|++++.+++++.. .+.|.+||+.+++.+.... .+. +.+++|+
T Consensus 252 ~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~----------------~~~--p~~ia~s 313 (361)
T 2oiz_A 252 VPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIP----------------GRD--ALSMTID 313 (361)
T ss_dssp EECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEE----------------CTT--CCEEEEE
T ss_pred ccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEe----------------cCC--eeEEEEC
Confidence 11223789999888777643 3589999999887544221 112 7889999
Q ss_pred CCCCEEEEEEecCCeEEEEECCCC--ceEEEeeCCCCCeEEEEEccCCCC
Q psy9598 731 ASDRWVITAINFNFQIKIWDAFNG--DLVQVLKGHTNEVFVLESHPFDSR 778 (1915)
Q Consensus 731 pdg~~L~t~s~~Dg~I~vwD~~tg--~~i~~l~gH~~~V~sl~~sp~dg~ 778 (1915)
|+|++|++++. +.|.|||..++ +.+..+..+......++++| +|.
T Consensus 314 pdg~~l~v~n~--~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p-~G~ 360 (361)
T 2oiz_A 314 QQRNLMLTLDG--GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHP-VGG 360 (361)
T ss_dssp TTTTEEEEECS--SCEEEEECSSSSCEEEEEETTSCSSEEEEEECC-CSC
T ss_pred CCCCEEEEeCC--CeEEEEECCCCcceeeEEeccCCCCcEEEEecC-CCC
Confidence 99999887763 99999999999 99999877777889999999 654
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.5e-14 Score=177.93 Aligned_cols=297 Identities=8% Similarity=-0.071 Sum_probs=198.9
Q ss_pred EEEECCCCcEEEEEeCCCCC-----EEEEEEeCCCCEEEEEeCC---CcEEEEECCCCceEEEeecCCCCeEEEEeccCc
Q psy9598 501 KLWRARDGKLLATLRGCSGE-----ISDIAIDNRNILLAAGTVD---KTIRIWNLQTLAPISVLVGHQGIITGVNFCPLE 572 (1915)
Q Consensus 501 ~IWd~~tg~~~~~l~gH~~~-----I~~Lafspdg~~LaSgs~D---gtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~ 572 (1915)
..+|..++..+..+..+... +.+++|+|||++|+.++.. ..|.+||+.++.......++...+..+.|+|
T Consensus 13 ~~~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~sp-- 90 (396)
T 3c5m_A 13 TFVDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFIST-- 90 (396)
T ss_dssp EEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECT--
T ss_pred eeecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECC--
Confidence 45578888888888766544 7788999999998877543 4788999998876554443333333478998
Q ss_pred cCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCC
Q psy9598 573 VNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDS 652 (1915)
Q Consensus 573 ~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~ 652 (1915)
+++.|+.++.++.|.+||+.++......... .. |+++|..|+..+.++...+|..
T Consensus 91 --dg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~------------~~------~~~~g~~l~~~~~~~~~~~~~~----- 145 (396)
T 3c5m_A 91 --DERAFFYVKNELNLMKVDLETLEEQVIYTVD------------EE------WKGYGTWVANSDCTKLVGIEIL----- 145 (396)
T ss_dssp --TSSEEEEEETTTEEEEEETTTCCEEEEEECC------------TT------EEEEEEEEECTTSSEEEEEEEE-----
T ss_pred --CCCEEEEEEcCCcEEEEECCCCCcEEEEecc------------cc------cCCCCCEEEeccCCcccccccc-----
Confidence 4589999999999999999876432111111 11 5667777777666655555431
Q ss_pred CceeEEeccCCCCeeEEEEcCCCCEEEEE-----eCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEE
Q psy9598 653 PLGILEVEEHSDKVDSIQWSHSHLRFVSG-----SRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMV 727 (1915)
Q Consensus 653 ~~~i~~l~~h~~~V~sl~fspdg~~L~sg-----s~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v 727 (1915)
.+.|+|++..++.+ ..++.|.+||+.++....+. .+...+..+
T Consensus 146 ---------------~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-----------------~~~~~~~~~ 193 (396)
T 3c5m_A 146 ---------------KRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-----------------QDTAWLGHP 193 (396)
T ss_dssp ---------------GGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-----------------EESSCEEEE
T ss_pred ---------------ccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-----------------cCCcccccc
Confidence 23477888876654 46678999999887644322 133457889
Q ss_pred EECC-CCCEEEEEEecC-----CeEEEEECCCCceEEEeeCC-CCCeEEEEEccCCCCEEEEEecC-----ceEEEEECC
Q psy9598 728 AWDA-SDRWVITAINFN-----FQIKIWDAFNGDLVQVLKGH-TNEVFVLESHPFDSRVLLSAGHD-----GLIIIWDIL 795 (1915)
Q Consensus 728 a~sp-dg~~L~t~s~~D-----g~I~vwD~~tg~~i~~l~gH-~~~V~sl~~sp~dg~~LaSgs~D-----G~I~IWdl~ 795 (1915)
.|+| ++..|+.++... ..|.+||+.++........+ ...+..++|+| +++.|+.++.+ +.|++||+.
T Consensus 194 ~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~l~~~d~~ 272 (396)
T 3c5m_A 194 IYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIP-DGSAMAYVSYFKGQTDRVIYKANPE 272 (396)
T ss_dssp EEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECT-TSSCEEEEEEETTTCCEEEEEECTT
T ss_pred eECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECC-CCCEEEEEecCCCCccceEEEEECC
Confidence 9999 788777665412 46999998766544433322 23578899999 88877766544 559999998
Q ss_pred CCccccceeeeeeecCCCCcceEEEEEcC-CCCEEEEEe----------------CCCeEEEEeCCCCccccc--C----
Q psy9598 796 SSKQRGYKWFHNIVEGQGEGALFDGKWSP-DGTTCALTD----------------SYGHLLVYGLGGFKRPQN--I---- 852 (1915)
Q Consensus 796 s~~~~~~~~~~~~~~~~~~~~V~~vafSp-dg~~Lasg~----------------~dG~I~Iwdl~s~~~~~~--l---- 852 (1915)
++.. ..... .. + .. ++|+| ||++|++++ .++.|++|++.++..... .
T Consensus 273 ~g~~--~~l~~----~~--~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~ 342 (396)
T 3c5m_A 273 TLEN--EEVMV----MP--P-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSW 342 (396)
T ss_dssp TCCE--EEEEE----CC--S-EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCCEEEECCCCC
T ss_pred CCCe--EEeee----CC--C-CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceEEccCCCCcc
Confidence 8765 22111 11 1 22 89999 999888765 347899999987754211 1
Q ss_pred ----------CCceeecCCCCeeee
Q psy9598 853 ----------PRELFFHTDYRTLNR 867 (1915)
Q Consensus 853 ----------~~~~~F~~d~~~Lv~ 867 (1915)
...+.|++|++.++.
T Consensus 343 ~~~~~~~~~~~~~~~~s~dg~~l~~ 367 (396)
T 3c5m_A 343 DVLDGDRQITHPHPSFTPNDDGVLF 367 (396)
T ss_dssp CCBTTBSSTTCCCCEECTTSSEEEE
T ss_pred ccccccccCCCCCceEccCCCeEEE
Confidence 223578888887763
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.56 E-value=5.3e-13 Score=162.46 Aligned_cols=277 Identities=10% Similarity=-0.035 Sum_probs=192.9
Q ss_pred CcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEe
Q psy9598 477 SAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVL 556 (1915)
Q Consensus 477 ~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l 556 (1915)
..|.+++|++++..++..+.++.+++| .+.....+.++...+.+++|+++|++++++..++.|.+||..++.....+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~ 82 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPF 82 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEE
T ss_pred cccceeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEe
Confidence 457788899988888888888999999 56677778888888999999999998888888999999999988876655
Q ss_pred ecCCCCeEEEEeccCccCCCcEEEEEeCC----CeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcE
Q psy9598 557 VGHQGIITGVNFCPLEVNGFNYLASTSTD----GCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLF 632 (1915)
Q Consensus 557 ~~h~~~V~sl~fsp~~~~d~~~L~sgs~D----gtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~ 632 (1915)
..+...+.+++|+++ +.+++++..+ +.|.+||..++....... . ......+.+++++|+|.+
T Consensus 83 ~~~~~~~~~i~~~~d----g~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~-~---------~~~~~~~~~i~~d~~g~l 148 (333)
T 2dg1_A 83 VSHKANPAAIKIHKD----GRLFVCYLGDFKSTGGIFAATENGDNLQDIIE-D---------LSTAYCIDDMVFDSKGGF 148 (333)
T ss_dssp ECSSSSEEEEEECTT----SCEEEEECTTSSSCCEEEEECTTSCSCEEEEC-S---------SSSCCCEEEEEECTTSCE
T ss_pred eCCCCCcceEEECCC----CcEEEEeCCCCCCCceEEEEeCCCCEEEEEEc-c---------CccCCcccceEECCCCCE
Confidence 566788999999984 4777777666 689999987764321110 0 012356899999999987
Q ss_pred EEEEeC------CCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEE-EEeCCCcEEEEEccC-CceEEeeecc
Q psy9598 633 LATGSG------DHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFV-SGSRDGTALIWYYKC-SQWRFIRLDM 704 (1915)
Q Consensus 633 Lasgs~------Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~-sgs~DG~I~IWDl~~-~~~~~~~~~~ 704 (1915)
+++... .+.|..|+..+ . .+..+..+...+.+++|+++|..|+ +.+.++.|.+|++.+ +........
T Consensus 149 ~v~~~~~~~~~~~~~l~~~~~~~-~---~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~- 223 (333)
T 2dg1_A 149 YFTDFRGYSTNPLGGVYYVSPDF-R---TVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGA- 223 (333)
T ss_dssp EEEECCCBTTBCCEEEEEECTTS-C---CEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEE-
T ss_pred EEEeccccccCCCceEEEEeCCC-C---EEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccc-
Confidence 776653 24444454421 1 1222223344678999999998654 555678999999864 221110000
Q ss_pred cccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCC------CeEEEEEccCCCC
Q psy9598 705 NTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTN------EVFVLESHPFDSR 778 (1915)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~------~V~sl~~sp~dg~ 778 (1915)
. ....... ...+..++++++|.++++... ++.|.+||. +++.+..+..+.. .+.+++|+| ++.
T Consensus 224 ~-------~~~~~~~-~~~~~~i~~d~~G~l~v~~~~-~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~-dg~ 292 (333)
T 2dg1_A 224 T-------IPYYFTG-HEGPDSCCIDSDDNLYVAMYG-QGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIP-GTN 292 (333)
T ss_dssp E-------EEEECCS-SSEEEEEEEBTTCCEEEEEET-TTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECT-TSC
T ss_pred e-------EEEecCC-CCCCCceEECCCCCEEEEEcC-CCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECC-CCC
Confidence 0 0000011 135678999999987776665 789999998 5777777765543 689999998 776
Q ss_pred EEEEEecC
Q psy9598 779 VLLSAGHD 786 (1915)
Q Consensus 779 ~LaSgs~D 786 (1915)
.|+.++.+
T Consensus 293 ~L~v~~~~ 300 (333)
T 2dg1_A 293 QLIICSND 300 (333)
T ss_dssp EEEEEEEC
T ss_pred EEEEEeCc
Confidence 66655554
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=1.2e-12 Score=155.55 Aligned_cols=244 Identities=11% Similarity=0.060 Sum_probs=177.5
Q ss_pred cCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEe------CCCCCEEEEEEe-CCCCEEEEEeC-CCcEEE
Q psy9598 473 LGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLR------GCSGEISDIAID-NRNILLAAGTV-DKTIRI 544 (1915)
Q Consensus 473 ~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~------gH~~~I~~Lafs-pdg~~LaSgs~-DgtIrV 544 (1915)
.+|...+.+|+++++|.++++.+.++.|.+||.. +..+..+. +|...+.+|+++ +++.+++++.. ++.|.+
T Consensus 26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~ 104 (286)
T 1q7f_A 26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQI 104 (286)
T ss_dssp TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEE
T ss_pred CCccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEE
Confidence 3667889999999999999988889999999986 77776664 344678999995 67777776643 889999
Q ss_pred EECCCCceEEEee-cCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEE
Q psy9598 545 WNLQTLAPISVLV-GHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILC 623 (1915)
Q Consensus 545 WDl~tg~~~~~l~-~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~ 623 (1915)
|| .++..+..+. .+...+.+|++.+. +.++++.+.++.|.+||.... .+..+.. ..+...+.+
T Consensus 105 ~d-~~g~~~~~~~~~~~~~~~~i~~~~~----g~l~v~~~~~~~i~~~~~~g~-~~~~~~~----------~~~~~~p~~ 168 (286)
T 1q7f_A 105 YN-QYGQFVRKFGATILQHPRGVTVDNK----GRIIVVECKVMRVIIFDQNGN-VLHKFGC----------SKHLEFPNG 168 (286)
T ss_dssp EC-TTSCEEEEECTTTCSCEEEEEECTT----SCEEEEETTTTEEEEECTTSC-EEEEEEC----------TTTCSSEEE
T ss_pred EC-CCCcEEEEecCccCCCceEEEEeCC----CCEEEEECCCCEEEEEcCCCC-EEEEeCC----------CCccCCcEE
Confidence 99 5677776664 34467899999984 478888788899999996432 2111110 022356889
Q ss_pred EEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEecc--CCCCeeEEEEcCCCCEEEEEeCCC-cEEEEEccCCceEEe
Q psy9598 624 SSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEE--HSDKVDSIQWSHSHLRFVSGSRDG-TALIWYYKCSQWRFI 700 (1915)
Q Consensus 624 l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~--h~~~V~sl~fspdg~~L~sgs~DG-~I~IWDl~~~~~~~~ 700 (1915)
++++++|.++++...++.|.+|+..+ ..+..+.. +...+.+|+++++|.++++...++ .|.+|+... .....
T Consensus 169 i~~~~~g~l~v~~~~~~~i~~~~~~g----~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g-~~~~~ 243 (286)
T 1q7f_A 169 VVVNDKQEIFISDNRAHCVKVFNYEG----QYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDG-QLISA 243 (286)
T ss_dssp EEECSSSEEEEEEGGGTEEEEEETTC----CEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTS-CEEEE
T ss_pred EEECCCCCEEEEECCCCEEEEEcCCC----CEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCC-CEEEE
Confidence 99999999888888899999999732 23334433 346789999999999888888886 999999643 32221
Q ss_pred eecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCC
Q psy9598 701 RLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNG 754 (1915)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg 754 (1915)
... ......+.+++++++|.++++ +. ++.|++|++...
T Consensus 244 ~~~--------------~~~~~~~~~i~~~~~g~l~vs-~~-~~~v~v~~~~~~ 281 (286)
T 1q7f_A 244 LES--------------KVKHAQCFDVALMDDGSVVLA-SK-DYRLYIYRYVQL 281 (286)
T ss_dssp EEE--------------SSCCSCEEEEEEETTTEEEEE-ET-TTEEEEEECSCC
T ss_pred Ecc--------------cCCCCcceeEEECCCCcEEEE-CC-CCeEEEEEcccc
Confidence 100 011234678999999976555 55 899999998654
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=2e-12 Score=153.72 Aligned_cols=245 Identities=14% Similarity=0.134 Sum_probs=176.4
Q ss_pred CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEee------cCCCCeEEEEeccCccCCCcEEEEEeC-CCeE
Q psy9598 516 GCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLV------GHQGIITGVNFCPLEVNGFNYLASTST-DGCI 588 (1915)
Q Consensus 516 gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~------~h~~~V~sl~fsp~~~~d~~~L~sgs~-DgtI 588 (1915)
+|-..+.+|++++++.++++.+.++.|.+||.. +..+..+. +|...+.++++.+. ++.++++... ++.|
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~---~g~l~v~~~~~~~~i 102 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRN---SGDIIVTERSPTHQI 102 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETT---TTEEEEEECGGGCEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcC---CCeEEEEcCCCCCEE
Confidence 455678999999999999988889999999987 66666653 24467889999531 3456666543 8899
Q ss_pred EEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEec--cCCCCe
Q psy9598 589 GFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVE--EHSDKV 666 (1915)
Q Consensus 589 ~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~--~h~~~V 666 (1915)
.+||. ++..+..+.. .+...+.+++++++|.++++...++.|.+|+..+ ..+..+. .+...+
T Consensus 103 ~~~d~-~g~~~~~~~~-----------~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g----~~~~~~~~~~~~~~p 166 (286)
T 1q7f_A 103 QIYNQ-YGQFVRKFGA-----------TILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG----NVLHKFGCSKHLEFP 166 (286)
T ss_dssp EEECT-TSCEEEEECT-----------TTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS----CEEEEEECTTTCSSE
T ss_pred EEECC-CCcEEEEecC-----------ccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCC----CEEEEeCCCCccCCc
Confidence 99994 4432221111 1235678999999999888888889999999632 2233332 455678
Q ss_pred eEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCC-e
Q psy9598 667 DSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNF-Q 745 (1915)
Q Consensus 667 ~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg-~ 745 (1915)
.+|+++++|.++++.+.++.|.+||.... ...... ..+....+..++++++|.++++... ++ .
T Consensus 167 ~~i~~~~~g~l~v~~~~~~~i~~~~~~g~-~~~~~~--------------~~g~~~~p~~i~~d~~G~l~v~~~~-~~~~ 230 (286)
T 1q7f_A 167 NGVVVNDKQEIFISDNRAHCVKVFNYEGQ-YLRQIG--------------GEGITNYPIGVGINSNGEILIADNH-NNFN 230 (286)
T ss_dssp EEEEECSSSEEEEEEGGGTEEEEEETTCC-EEEEES--------------CTTTSCSEEEEEECTTCCEEEEECS-SSCE
T ss_pred EEEEECCCCCEEEEECCCCEEEEEcCCCC-EEEEEc--------------cCCccCCCcEEEECCCCCEEEEeCC-CCEE
Confidence 99999999998888888999999997543 221110 0112245788999999987777665 65 9
Q ss_pred EEEEECCCCceEEEeeCCCC--CeEEEEEccCCCCEEEEEecCceEEEEECCCCcc
Q psy9598 746 IKIWDAFNGDLVQVLKGHTN--EVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQ 799 (1915)
Q Consensus 746 I~vwD~~tg~~i~~l~gH~~--~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~ 799 (1915)
|.+|+. +++.+..+..+.. .+.+++++| ++.++++ +.|++|+||++....+
T Consensus 231 i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~-~g~l~vs-~~~~~v~v~~~~~~~p 283 (286)
T 1q7f_A 231 LTIFTQ-DGQLISALESKVKHAQCFDVALMD-DGSVVLA-SKDYRLYIYRYVQLAP 283 (286)
T ss_dssp EEEECT-TSCEEEEEEESSCCSCEEEEEEET-TTEEEEE-ETTTEEEEEECSCCCC
T ss_pred EEEECC-CCCEEEEEcccCCCCcceeEEECC-CCcEEEE-CCCCeEEEEEcccccc
Confidence 999995 5777777765543 478999999 8887777 6799999999865443
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.54 E-value=9.2e-13 Score=160.31 Aligned_cols=276 Identities=10% Similarity=0.004 Sum_probs=190.1
Q ss_pred CCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCcc
Q psy9598 519 GEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDID 598 (1915)
Q Consensus 519 ~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~ 598 (1915)
..|.+|+|++++..+++.+.++.+++| .+.....+..+...+.+++|+++ +.+++++..++.|.+||..++..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~----g~l~~~~~~~~~i~~~d~~~~~~ 78 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQ----GQLFLLDVFEGNIFKINPETKEI 78 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTT----SCEEEEETTTCEEEEECTTTCCE
T ss_pred cccceeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCC----CCEEEEECCCCEEEEEeCCCCcE
Confidence 457888999998888887889999999 45677778888888899999984 47777888899999999887643
Q ss_pred ccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCC----CeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCC
Q psy9598 599 ISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGD----HHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHS 674 (1915)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~D----g~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspd 674 (1915)
..... .+...+.+++++++|.+++++..+ +.|.+||..+.. ...+.....+...+.+++++++
T Consensus 79 ~~~~~------------~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~-~~~~~~~~~~~~~~~~i~~d~~ 145 (333)
T 2dg1_A 79 KRPFV------------SHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDN-LQDIIEDLSTAYCIDDMVFDSK 145 (333)
T ss_dssp EEEEE------------CSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCS-CEEEECSSSSCCCEEEEEECTT
T ss_pred EEEee------------CCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCE-EEEEEccCccCCcccceEECCC
Confidence 21110 123578999999999888877666 689999974322 1111111234567899999999
Q ss_pred CCEEEEEeC------CCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEE
Q psy9598 675 HLRFVSGSR------DGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKI 748 (1915)
Q Consensus 675 g~~L~sgs~------DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~v 748 (1915)
|.++++... .+.|..|+..++...... .....+..++|+++|.+|+++...++.|.+
T Consensus 146 g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~-----------------~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~ 208 (333)
T 2dg1_A 146 GGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPII-----------------QNISVANGIALSTDEKVLWVTETTANRLHR 208 (333)
T ss_dssp SCEEEEECCCBTTBCCEEEEEECTTSCCEEEEE-----------------EEESSEEEEEECTTSSEEEEEEGGGTEEEE
T ss_pred CCEEEEeccccccCCCceEEEEeCCCCEEEEee-----------------cCCCcccceEECCCCCEEEEEeCCCCeEEE
Confidence 987777654 245555555544432211 012346789999999987776654789999
Q ss_pred EECCC-CceEEE--------eeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeec-CCCCcceE
Q psy9598 749 WDAFN-GDLVQV--------LKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVE-GQGEGALF 818 (1915)
Q Consensus 749 wD~~t-g~~i~~--------l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~-~~~~~~V~ 818 (1915)
|++.+ +..+.. +.++ ..+..+++++ ++.++++...++.|.+||.. +.. +..+..... ..+...+.
T Consensus 209 ~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~-~G~l~v~~~~~~~v~~~d~~-g~~--~~~~~~~~~~~g~~~~~~ 283 (333)
T 2dg1_A 209 IALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDS-DDNLYVAMYGQGRVLVFNKR-GYP--IGQILIPGRDEGHMLRST 283 (333)
T ss_dssp EEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBT-TCCEEEEEETTTEEEEECTT-SCE--EEEEECTTGGGTCSCBCC
T ss_pred EEecCCCcCcccccceEEEecCCC-CCCCceEECC-CCCEEEEEcCCCEEEEECCC-CCE--EEEEEcCCCccccccCcc
Confidence 99864 443321 1223 4678899999 88888888888999999984 444 333321000 00112688
Q ss_pred EEEEcCCCCEEEEEeCCC
Q psy9598 819 DGKWSPDGTTCALTDSYG 836 (1915)
Q Consensus 819 ~vafSpdg~~Lasg~~dG 836 (1915)
+++|+|||..|++++.+|
T Consensus 284 ~~~~~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 284 HPQFIPGTNQLIICSNDI 301 (333)
T ss_dssp EEEECTTSCEEEEEEECG
T ss_pred eEEECCCCCEEEEEeCcc
Confidence 999999988887776654
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.1e-12 Score=157.85 Aligned_cols=258 Identities=9% Similarity=0.026 Sum_probs=177.1
Q ss_pred CcEEEEEEcCCCCEEEEEE---------CCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCC---C--cE
Q psy9598 477 SAVFCVLFDKLGEVIVTGA---------DDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVD---K--TI 542 (1915)
Q Consensus 477 ~~V~~vafspdg~~LaTGs---------~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~D---g--tI 542 (1915)
..|..++| ||++||... .++.|.+|++.++.... + ..+.+++|+|||++||.++.+ + .|
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l 87 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I----ENATMPRISPDGKKIAFMRANEEKKVSEI 87 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E----ESCEEEEECTTSSEEEEEEEETTTTEEEE
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c----ccCCCeEECCCCCEEEEEEeccCCCcceE
Confidence 45677777 888887642 25689999999887543 3 568899999999999887754 2 48
Q ss_pred EEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCC---------------------------CeEEEEeccc
Q psy9598 543 RIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTD---------------------------GCIGFWKYKL 595 (1915)
Q Consensus 543 rVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~D---------------------------gtI~iWDl~~ 595 (1915)
.+|++.++........+ . +.+++|+|+ +..|+.++.+ ..|.+||+.+
T Consensus 88 ~~~~~~~g~~~~l~~~~-~-~~~~~wspd----g~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~ 161 (347)
T 2gop_A 88 WVADLETLSSKKILEAK-N-IRSLEWNED----SRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTES 161 (347)
T ss_dssp EEEETTTTEEEEEEEES-E-EEEEEECTT----SSEEEEEEECCCC---------CCCC---------CEEEEEEEETTT
T ss_pred EEEECCCCceEEEEcCC-C-ccceeECCC----CCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCC
Confidence 88899888766655444 3 999999994 4777777632 5788899877
Q ss_pred CccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCC-------eEEEEEecCCCCCceeEEeccCCCCeeE
Q psy9598 596 DIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDH-------HVRVYKMDGVDSPLGILEVEEHSDKVDS 668 (1915)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg-------~I~IwDl~~~~~~~~i~~l~~h~~~V~s 668 (1915)
+..+..+. . . .+.+++|+|+| +++++..++ ...||.++ .. ....+..+ ..+.+
T Consensus 162 ~~~~~~l~------------~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d-~~---~~~~l~~~-~~~~~ 221 (347)
T 2gop_A 162 EEVIEEFE------------K-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE-DG---KEEKMFEK-VSFYA 221 (347)
T ss_dssp TEEEEEEE------------E-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE-TT---EEEEEEEE-ESEEE
T ss_pred CeEEeeec------------C-C-CcccccCCCCe-EEEEEecccccccccccccEEEeC-CC---ceEEeccC-cceee
Confidence 64311111 0 1 45688999999 777776542 45677664 22 22333334 45554
Q ss_pred EEEcCCCCEEEEEeCCC--------cEEEEEccCCceEEeeecccccCCCCccccccccccccEEE-EEECCCCCEEEEE
Q psy9598 669 IQWSHSHLRFVSGSRDG--------TALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTM-VAWDASDRWVITA 739 (1915)
Q Consensus 669 l~fspdg~~L~sgs~DG--------~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~-va~spdg~~L~t~ 739 (1915)
+ +|+|.+|+.++.++ .|.+|| +++...+ ...+...+.. ++|+ ++ +++++
T Consensus 222 ~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l----------------~~~~~~~~~~~~~~s-dg-~~~~~ 279 (347)
T 2gop_A 222 V--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGI----------------LDEVDRGVGQAKIKD-GK-VYFTL 279 (347)
T ss_dssp E--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEES----------------STTCCSEEEEEEEET-TE-EEEEE
T ss_pred E--CCCCCEEEEEEccccCCccccceEEEEC--CCceEec----------------cccCCcccCCccEEc-Cc-EEEEE
Confidence 4 99999888877543 577776 4442211 1123455665 8999 88 77777
Q ss_pred EecCCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceE-EEEECC
Q psy9598 740 INFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLI-IIWDIL 795 (1915)
Q Consensus 740 s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I-~IWdl~ 795 (1915)
+. ++.++|| +.+++... +..+.+.|.+++|+| .++++++.++.. .||.+.
T Consensus 280 ~~-~~~~~l~-~~~g~~~~-~~~~~~~v~~~~~s~---~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 280 FE-EGSVNLY-IWDGEIKP-IAKGRHWIMGFDVDE---IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp EE-TTEEEEE-EESSSEEE-EECSSSEEEEEEESS---SEEEEEECSSSCCEEEEES
T ss_pred ec-CCcEEEE-EcCCceEE-EecCCCeEEeeeeeC---cEEEEEcCCCChHHheEeC
Confidence 76 9999999 87666544 445577899999998 678888877765 778776
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=1.5e-12 Score=158.68 Aligned_cols=254 Identities=9% Similarity=0.003 Sum_probs=179.3
Q ss_pred CCcEEEEEEcCCCCEEEEEECC------------------------CcEEEEECCCCcEEEEEe-CCCCCEEEEEEeCCC
Q psy9598 476 LSAVFCVLFDKLGEVIVTGADD------------------------LLIKLWRARDGKLLATLR-GCSGEISDIAIDNRN 530 (1915)
Q Consensus 476 ~~~V~~vafspdg~~LaTGs~D------------------------g~I~IWd~~tg~~~~~l~-gH~~~I~~Lafspdg 530 (1915)
.+.|.+|+|+++|+++++++.+ +.|.+||..+++++..+. ++-.....|+++++|
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g 102 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG 102 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence 4779999999999999988877 479999999999887765 455689999999999
Q ss_pred CEEEEEeCCCcEEEEECCCCc-eEEEe---------ecCCCCeEEEEeccCccCCCcEEEEEe-CCCeEEEEecccCccc
Q psy9598 531 ILLAAGTVDKTIRIWNLQTLA-PISVL---------VGHQGIITGVNFCPLEVNGFNYLASTS-TDGCIGFWKYKLDIDI 599 (1915)
Q Consensus 531 ~~LaSgs~DgtIrVWDl~tg~-~~~~l---------~~h~~~V~sl~fsp~~~~d~~~L~sgs-~DgtI~iWDl~~~~~~ 599 (1915)
.++++.+.++.|++|+..... .+..+ .++.....+|+|+|. ++.++++.+ .++.|++|+.. +..+
T Consensus 103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~---~g~lyv~d~~~~~~I~~~~~~-g~~~ 178 (329)
T 3fvz_A 103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPS---TGAVFVSDGYCNSRIVQFSPS-GKFV 178 (329)
T ss_dssp CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTT---TCCEEEEECSSCCEEEEECTT-SCEE
T ss_pred CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCC---CCeEEEEeCCCCCeEEEEcCC-CCEE
Confidence 999998889999999986542 45555 344557899999982 347777776 69999999943 3322
Q ss_pred cceeccCccccccccCCCCCceEEEEECCC-CcEEEEEeCCCeEEEEEecCCCCCceeEEe--ccCCCCeeEEEEcC---
Q psy9598 600 SKTVFHEPVMFNERIRPGNAHILCSSFSPG-GLFLATGSGDHHVRVYKMDGVDSPLGILEV--EEHSDKVDSIQWSH--- 673 (1915)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~~V~~l~fspd-g~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l--~~h~~~V~sl~fsp--- 673 (1915)
..+...... ......+.....+++++|+ |.++++...++.|++|+..+ ...+..+ ..+...+.+++|+|
T Consensus 179 ~~~~~~g~~--~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~---G~~~~~~~~~~~~~~~~~~~~~pg~~ 253 (329)
T 3fvz_A 179 TQWGEESSG--SSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDT---KEFVREIKHASFGRNVFAISYIPGFL 253 (329)
T ss_dssp EEECEECCS--SSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTT---CCEEEEECCTTTTTCEEEEEEETTEE
T ss_pred EEeccCCCC--CCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCC---CcEEEEEeccccCCCcceeeecCCEE
Confidence 222111000 0000011234789999998 78888888899999999842 2333443 45667889999999
Q ss_pred ---CCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEE
Q psy9598 674 ---SHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWD 750 (1915)
Q Consensus 674 ---dg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD 750 (1915)
+|..+++.+.++.|++|++.+++....... ...+...+..|+++++| .|+++...++.|++|+
T Consensus 254 ~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~-------------~~~~~~~p~~ia~~~dG-~lyvad~~~~~I~~~~ 319 (329)
T 3fvz_A 254 FAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKP-------------VRKHFDMPHDIVASEDG-TVYIGDAHTNTVWKFT 319 (329)
T ss_dssp EEEECCCCTTCSCCCCEEEEETTTCCEEEEECC-------------SSSCCSSEEEEEECTTS-EEEEEESSSCCEEEEE
T ss_pred EEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcC-------------CCCccCCeeEEEECCCC-CEEEEECCCCEEEEEe
Confidence 333333333455899999998876543210 12244567899999999 4555544489999999
Q ss_pred CC
Q psy9598 751 AF 752 (1915)
Q Consensus 751 ~~ 752 (1915)
+.
T Consensus 320 ~~ 321 (329)
T 3fvz_A 320 LT 321 (329)
T ss_dssp EE
T ss_pred CC
Confidence 74
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.53 E-value=4.5e-13 Score=179.47 Aligned_cols=295 Identities=9% Similarity=-0.031 Sum_probs=192.6
Q ss_pred EEeCCCCCEEEEEEeCCCCEEEEE--eCCCcEEEEECCCCceEEEeecCCCCeE---------EEEec--cCccCCCcE-
Q psy9598 513 TLRGCSGEISDIAIDNRNILLAAG--TVDKTIRIWNLQTLAPISVLVGHQGIIT---------GVNFC--PLEVNGFNY- 578 (1915)
Q Consensus 513 ~l~gH~~~I~~Lafspdg~~LaSg--s~DgtIrVWDl~tg~~~~~l~~h~~~V~---------sl~fs--p~~~~d~~~- 578 (1915)
.+.+|...|.+++|++++.+++++ +.++...||....+.....+..|...|. +..|+ |+ ++.
T Consensus 18 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPD----g~~~ 93 (662)
T 3azo_A 18 LVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPA----GGPL 93 (662)
T ss_dssp HHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSS----SSCE
T ss_pred HHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecC----CCeE
Confidence 356788999999999887777777 5588999999655556677777776666 56665 74 366
Q ss_pred EEEEeC-CCeEEEEecc--c-CccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCC----------CeEEE
Q psy9598 579 LASTST-DGCIGFWKYK--L-DIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGD----------HHVRV 644 (1915)
Q Consensus 579 L~sgs~-DgtI~iWDl~--~-~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~D----------g~I~I 644 (1915)
|+.++. +..|.+|++. + +. ...+... ....+...+.+++|+|||+.|++++.+ ..|++
T Consensus 94 la~~~~~~~~l~~~~~~~~g~~~-~~~l~~~-------~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~ 165 (662)
T 3azo_A 94 LVFTHFGDQRLYAFEPDAPGGAV-PRPLTPV-------SAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAA 165 (662)
T ss_dssp EEEEBTTTCCEEEECTTSTTCCC-CEECSCC-------CCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEE
T ss_pred EEEEECCCCeEEEEcCCCCCCCC-CEeccCC-------ccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEE
Confidence 555543 5666666665 2 32 1111110 000134678899999999999998876 58999
Q ss_pred EEecCCC--CCceeEEec-cCCCCeeEEEEcCCCCEEEEEeCC--------CcEEEEEcc-CC---ceEEeeecccccCC
Q psy9598 645 YKMDGVD--SPLGILEVE-EHSDKVDSIQWSHSHLRFVSGSRD--------GTALIWYYK-CS---QWRFIRLDMNTCLP 709 (1915)
Q Consensus 645 wDl~~~~--~~~~i~~l~-~h~~~V~sl~fspdg~~L~sgs~D--------G~I~IWDl~-~~---~~~~~~~~~~~~~~ 709 (1915)
||+.+.. .......+. .+...+.+++|+|+|++|+.++.+ ..|.+||+. ++ ....+.
T Consensus 166 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~-------- 237 (662)
T 3azo_A 166 VPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLL-------- 237 (662)
T ss_dssp EETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEE--------
T ss_pred EECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeC--------
Confidence 9985410 001233444 566788899999999999988755 379999998 45 222111
Q ss_pred CCccccccccccccEEEEEECCCCCEEEEEEecCC--eEEEEECCCCceEEEeeCCCCC--------eEEEEEccCCCCE
Q psy9598 710 HTKETSDETNKKIKVTMVAWDASDRWVITAINFNF--QIKIWDAFNGDLVQVLKGHTNE--------VFVLESHPFDSRV 779 (1915)
Q Consensus 710 ~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg--~I~vwD~~tg~~i~~l~gH~~~--------V~sl~~sp~dg~~ 779 (1915)
..+...+..++|+|||++++++.. ++ .|++||+.+++....+.++... +..++|+| ++.+
T Consensus 238 --------~~~~~~~~~~~~spdg~l~~~~~~-~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~-~~~~ 307 (662)
T 3azo_A 238 --------GGPEEAIAQAEWAPDGSLIVATDR-TGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLA-NGLI 307 (662)
T ss_dssp --------EETTBCEEEEEECTTSCEEEEECT-TSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECT-TSCE
T ss_pred --------CCCCceEcceEECCCCeEEEEECC-CCCeEEEEEECCCCceeecccccccccCccccccCceEeEeC-CCEE
Confidence 113456889999999996555544 77 7778887777766555544332 56788988 8899
Q ss_pred EEEEecCceEEEE--ECCCCccccceeeeeeecCCCCcceEEEEEcCCCCE--EEEEeCCC--eEEEEeCCCCc
Q psy9598 780 LLSAGHDGLIIIW--DILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTT--CALTDSYG--HLLVYGLGGFK 847 (1915)
Q Consensus 780 LaSgs~DG~I~IW--dl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~--Lasg~~dG--~I~Iwdl~s~~ 847 (1915)
+++++. |.++|| |+.++.. ..+. .+.+.+..+ |++++.. +++++.+. .|++|++.+++
T Consensus 308 ~~~~~~-~~~~l~~~d~~~~~~---~~l~-----~~~~~~~~~-~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~ 371 (662)
T 3azo_A 308 AVVHGK-GAAVLGILDPESGEL---VDAA-----GPWTEWAAT-LTVSGTRAVGVAASPRTAYEVVELDTVTGR 371 (662)
T ss_dssp EEEEBS-SSCEEEEEETTTTEE---EECC-----SSCCEEEEE-EEEETTEEEEEEEETTEEEEEEEEETTTCC
T ss_pred EEEEEc-CccEEEEEECCCCcE---EEec-----CCCCeEEEE-EecCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 999998 999999 4444432 2222 234456655 2444543 44444443 46666766664
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=3e-11 Score=143.67 Aligned_cols=285 Identities=8% Similarity=-0.028 Sum_probs=199.4
Q ss_pred EecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEE-EeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCC
Q psy9598 471 VNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLAT-LRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQT 549 (1915)
Q Consensus 471 ~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~-l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~t 549 (1915)
.+..+...+.+|+++++|.++++...++.|.+||.. +..... +..+...+.+|+++++|.++++...++.|..|+..
T Consensus 9 ~~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~- 86 (299)
T 2z2n_A 9 NLTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK- 86 (299)
T ss_dssp ECCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-
T ss_pred cCCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-
Confidence 455677899999999999988877668899999988 654432 23356789999999999988887778899999986
Q ss_pred CceE-EEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECC
Q psy9598 550 LAPI-SVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSP 628 (1915)
Q Consensus 550 g~~~-~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fsp 628 (1915)
+... ..+..+...+.++++.+. +.++++...++.|.+||. ++... .... ......+.++++++
T Consensus 87 g~~~~~~~~~~~~~~~~i~~~~~----g~l~v~~~~~~~i~~~d~-~g~~~-~~~~----------~~~~~~~~~i~~~~ 150 (299)
T 2z2n_A 87 GIIKEYTLPNPDSAPYGITEGPN----GDIWFTEMNGNRIGRITD-DGKIR-EYEL----------PNKGSYPSFITLGS 150 (299)
T ss_dssp SCEEEEECSSTTCCEEEEEECTT----SCEEEEETTTTEEEEECT-TCCEE-EEEC----------SSTTCCEEEEEECT
T ss_pred CcEEEEeCCCcCCCceeeEECCC----CCEEEEecCCceEEEECC-CCCEE-EecC----------CCCCCCCceEEEcC
Confidence 4332 222234567899999873 477777777889999998 44221 1111 11235688999999
Q ss_pred CCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccC
Q psy9598 629 GGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCL 708 (1915)
Q Consensus 629 dg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~ 708 (1915)
+|.++++...++.|.+||. .. . .....+..+...+.+|+++++|.++++...++.|.+||. ++.......
T Consensus 151 ~g~l~v~~~~~~~i~~~~~-~g-~-~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~------ 220 (299)
T 2z2n_A 151 DNALWFTENQNNAIGRITE-SG-D-ITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKI------ 220 (299)
T ss_dssp TSCEEEEETTTTEEEEECT-TC-C-EEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEEC------
T ss_pred CCCEEEEeCCCCEEEEEcC-CC-c-EEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEEC------
Confidence 9988777777789999987 21 1 111223344567889999999997777777889999998 665332110
Q ss_pred CCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEE-eeCCCCCeEEEEEccCCCCEEEEEecCc
Q psy9598 709 PHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQV-LKGHTNEVFVLESHPFDSRVLLSAGHDG 787 (1915)
Q Consensus 709 ~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~-l~gH~~~V~sl~~sp~dg~~LaSgs~DG 787 (1915)
......+.+++++++|..+++... ++.|.+||. ++..... +..+...+.++++ + ++.++++.+ .+
T Consensus 221 ---------~~~~~~~~~i~~~~~g~l~v~~~~-~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~-~-~g~l~v~~~-~~ 286 (299)
T 2z2n_A 221 ---------PTPNARPHAITAGAGIDLWFTEWG-ANKIGRLTS-NNIIEEYPIQIKSAEPHGICF-D-GETIWFAME-CD 286 (299)
T ss_dssp ---------SSTTCCEEEEEECSTTCEEEEETT-TTEEEEEET-TTEEEEEECSSSSCCEEEEEE-C-SSCEEEEET-TT
T ss_pred ---------CCCCCCceeEEECCCCCEEEeccC-CceEEEECC-CCceEEEeCCCCCCccceEEe-c-CCCEEEEec-CC
Confidence 113356789999999985555434 789999998 5543322 3355567899999 7 888777665 56
Q ss_pred eEEEEECCCC
Q psy9598 788 LIIIWDILSS 797 (1915)
Q Consensus 788 ~I~IWdl~s~ 797 (1915)
.|..++..++
T Consensus 287 ~l~~~~~~~~ 296 (299)
T 2z2n_A 287 KIGKLTLIKD 296 (299)
T ss_dssp EEEEEEEC--
T ss_pred cEEEEEcCcc
Confidence 7777777654
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=2.2e-12 Score=157.33 Aligned_cols=252 Identities=11% Similarity=0.048 Sum_probs=183.0
Q ss_pred CCCEEEEEEeCCCCEEEEEeCC------------------------CcEEEEECCCCceEEEee-cCCCCeEEEEeccCc
Q psy9598 518 SGEISDIAIDNRNILLAAGTVD------------------------KTIRIWNLQTLAPISVLV-GHQGIITGVNFCPLE 572 (1915)
Q Consensus 518 ~~~I~~Lafspdg~~LaSgs~D------------------------gtIrVWDl~tg~~~~~l~-~h~~~V~sl~fsp~~ 572 (1915)
-+.|.+|+++++|+++++.+.+ ++|.+||..+++.+..+. ++...+.+|++++.
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~- 101 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTD- 101 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTT-
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCC-
Confidence 3579999999999999988877 479999999999877664 45567899999984
Q ss_pred cCCCcEEEEEeCCCeEEEEecccCc-cccceeccCccccccccCCCCCceEEEEECC-CCcEEEEEe-CCCeEEEEEecC
Q psy9598 573 VNGFNYLASTSTDGCIGFWKYKLDI-DISKTVFHEPVMFNERIRPGNAHILCSSFSP-GGLFLATGS-GDHHVRVYKMDG 649 (1915)
Q Consensus 573 ~~d~~~L~sgs~DgtI~iWDl~~~~-~~~~~~~~~~~~~~~~~~~~~~~V~~l~fsp-dg~~Lasgs-~Dg~I~IwDl~~ 649 (1915)
+.++++.+.++.|++|+..... .+..+... .. ...-..+.....+++|+| +|.++++.+ .++.|++|+..+
T Consensus 102 ---g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~--~~-~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g 175 (329)
T 3fvz_A 102 ---GNYWVTDVALHQVFKLDPHSKEGPLLILGRS--MQ-PGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSG 175 (329)
T ss_dssp ---SCEEEEETTTTEEEEECTTCSSCCSEEESBT--TB-CCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTS
T ss_pred ---CCEEEEECCCCEEEEEeCCCCeEEEEEeccc--CC-CCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCC
Confidence 4788888889999999986542 11111100 00 000012335688999999 788888886 689999999532
Q ss_pred CCCCceeEEec----------cCCCCeeEEEEcCC-CCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccc
Q psy9598 650 VDSPLGILEVE----------EHSDKVDSIQWSHS-HLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDET 718 (1915)
Q Consensus 650 ~~~~~~i~~l~----------~h~~~V~sl~fspd-g~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~ 718 (1915)
..+..+. ++-....+|+++++ +.++++...++.|++|+..+++.+.... ..
T Consensus 176 ----~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~--------------~~ 237 (329)
T 3fvz_A 176 ----KFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIK--------------HA 237 (329)
T ss_dssp ----CEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEC--------------CT
T ss_pred ----CEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEe--------------cc
Confidence 2233332 12244889999998 7778888889999999998777544221 11
Q ss_pred cccccEEEEEECCCCCEEEEEEe------cCCeEEEEECCCCceEEEee---CCCCCeEEEEEccCCCCEEEEEecCceE
Q psy9598 719 NKKIKVTMVAWDASDRWVITAIN------FNFQIKIWDAFNGDLVQVLK---GHTNEVFVLESHPFDSRVLLSAGHDGLI 789 (1915)
Q Consensus 719 ~~~~~V~~va~spdg~~L~t~s~------~Dg~I~vwD~~tg~~i~~l~---gH~~~V~sl~~sp~dg~~LaSgs~DG~I 789 (1915)
.+...+..++|+| +..+++.+. .+..|++|++.+++.+..+. ++...+.+|+++| ++.++++...++.|
T Consensus 238 ~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~-dG~lyvad~~~~~I 315 (329)
T 3fvz_A 238 SFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASE-DGTVYIGDAHTNTV 315 (329)
T ss_dssp TTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECT-TSEEEEEESSSCCE
T ss_pred ccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECC-CCCEEEEECCCCEE
Confidence 2345677888988 333333221 14589999999999999884 6777899999999 88888988999999
Q ss_pred EEEECCC
Q psy9598 790 IIWDILS 796 (1915)
Q Consensus 790 ~IWdl~s 796 (1915)
++|++..
T Consensus 316 ~~~~~~~ 322 (329)
T 3fvz_A 316 WKFTLTE 322 (329)
T ss_dssp EEEEEEE
T ss_pred EEEeCCc
Confidence 9999864
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=7.3e-12 Score=163.11 Aligned_cols=321 Identities=15% Similarity=0.093 Sum_probs=215.8
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecc--cCccccceecc
Q psy9598 528 NRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYK--LDIDISKTVFH 605 (1915)
Q Consensus 528 pdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~--~~~~~~~~~~~ 605 (1915)
+.+.++++...+++|.|||..+++.+..+... ..+.++.|+| ++++|++++.|+.|.+||+. +...+..+..
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g-~~p~~v~~Sp----DGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~- 238 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSA----SGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI- 238 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECT----TSCEEEEEETTSEEEEEETTSSSCCEEEEEEC-
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeCC-CCccceEECC----CCCEEEEEcCCCeEEEEECCCCCCcEeEEEec-
Confidence 44556777788999999999999999888643 3567999999 45899999999999999995 5543322221
Q ss_pred CccccccccCCCCCceEEEEEC----CCCcEEEEEeC-CCeEEEEEecCCCCCceeEEec--c--------CCC-CeeEE
Q psy9598 606 EPVMFNERIRPGNAHILCSSFS----PGGLFLATGSG-DHHVRVYKMDGVDSPLGILEVE--E--------HSD-KVDSI 669 (1915)
Q Consensus 606 ~~~~~~~~~~~~~~~V~~l~fs----pdg~~Lasgs~-Dg~I~IwDl~~~~~~~~i~~l~--~--------h~~-~V~sl 669 (1915)
+ .....++|+ |+|+++++++. ++.|.|||..+ ...+..+. + |.. .+..|
T Consensus 239 -----------G-~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t---~~~~~~i~~~~~~~~~~~~~p~~rva~i 303 (567)
T 1qks_A 239 -----------G-SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGET---LEPKKIQSTRGMTYDEQEYHPEPRVAAI 303 (567)
T ss_dssp -----------C-SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTT---CCEEEEEECCEECTTTCCEESCCCEEEE
T ss_pred -----------C-CCCceeEEccccCCCCCEEEEEEccCCeEEEEECCC---CcEEEEEeccccccccccccCCCceEEE
Confidence 1 346789999 69988877665 58999999743 23333322 1 222 67888
Q ss_pred EEcCCCCEEE-EEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEE
Q psy9598 670 QWSHSHLRFV-SGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKI 748 (1915)
Q Consensus 670 ~fspdg~~L~-sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~v 748 (1915)
.+++++..++ +...+|.|.++|+.......... .........+.|+++|++++++...++.|.+
T Consensus 304 ~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~---------------i~~~~~~~d~~~~pdgr~~~va~~~sn~V~V 368 (567)
T 1qks_A 304 LASHYRPEFIVNVKETGKILLVDYTDLNNLKTTE---------------ISAERFLHDGGLDGSHRYFITAANARNKLVV 368 (567)
T ss_dssp EECSSSSEEEEEETTTTEEEEEETTCSSEEEEEE---------------EECCSSEEEEEECTTSCEEEEEEGGGTEEEE
T ss_pred EEcCCCCEEEEEecCCCeEEEEecCCCccceeee---------------eeccccccCceECCCCCEEEEEeCCCCeEEE
Confidence 8998876554 44566999999987654222110 0112345678999999999998876899999
Q ss_pred EECCCCceEEEeeC-----CCCCeEEEEEccCCCCEEEEEe-cCceEEEEECCCCcc-----ccceeeeeeecCCCCcce
Q psy9598 749 WDAFNGDLVQVLKG-----HTNEVFVLESHPFDSRVLLSAG-HDGLIIIWDILSSKQ-----RGYKWFHNIVEGQGEGAL 817 (1915)
Q Consensus 749 wD~~tg~~i~~l~g-----H~~~V~sl~~sp~dg~~LaSgs-~DG~I~IWdl~s~~~-----~~~~~~~~~~~~~~~~~V 817 (1915)
+|+.+++++..+.. |.+....+ ++|..+.+++++. .+++|.|+|..+... ..+..+. ..+.+.
T Consensus 369 iD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~----~~g~g~- 442 (567)
T 1qks_A 369 IDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFP----ALGGGS- 442 (567)
T ss_dssp EETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEE----CSCSCC-
T ss_pred EECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEe----cCCCCC-
Confidence 99999998877754 43222222 5772345555553 468999999987321 1133332 222222
Q ss_pred EEEEEcCCCCEEEEEeC-------CCeEEEEeCCCC-----c-ccccC--------------CCceeecCCCCeeeec--
Q psy9598 818 FDGKWSPDGTTCALTDS-------YGHLLVYGLGGF-----K-RPQNI--------------PRELFFHTDYRTLNRP-- 868 (1915)
Q Consensus 818 ~~vafSpdg~~Lasg~~-------dG~I~Iwdl~s~-----~-~~~~l--------------~~~~~F~~d~~~Lv~~-- 868 (1915)
..++++|++++|.+... .++|.|||+.+. . .+..+ +.++.|.++|+.+...
T Consensus 443 ~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~ 522 (567)
T 1qks_A 443 LFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVW 522 (567)
T ss_dssp CCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEE
T ss_pred EEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEee
Confidence 34678999999998763 459999999876 2 11222 2377899999877633
Q ss_pred ----CCCccceeecccCCCCCcCCCC
Q psy9598 869 ----NGLFEPTYDEVTNLPPHLMPPP 890 (1915)
Q Consensus 869 ----~~~~~~v~D~~t~~~p~~~~~p 890 (1915)
..+-+.|+|..|.......+.+
T Consensus 523 ~~~~~~~~i~v~D~~t~~~~~~i~~~ 548 (567)
T 1qks_A 523 NGKDQESALVVVDDKTLELKHVIKDE 548 (567)
T ss_dssp CCTTSCCEEEEEETTTTEEEEEECCT
T ss_pred cCCCCCCcEEEEECCCceEEEEeCCC
Confidence 1355778998887554444433
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.51 E-value=2.9e-12 Score=156.63 Aligned_cols=259 Identities=14% Similarity=0.079 Sum_probs=173.4
Q ss_pred CCEEEEEEeCCCCEEEEEe---------CCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCC---C
Q psy9598 519 GEISDIAIDNRNILLAAGT---------VDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTD---G 586 (1915)
Q Consensus 519 ~~I~~Lafspdg~~LaSgs---------~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~D---g 586 (1915)
..+..++| ||+.|+... .++.|.+||+.++.... + ..+.+++|+|+ +..|+.++.+ +
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l----~~~~~~~~SpD----g~~la~~~~~~~~~ 83 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I----ENATMPRISPD----GKKIAFMRANEEKK 83 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E----ESCEEEEECTT----SSEEEEEEEETTTT
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c----ccCCCeEECCC----CCEEEEEEeccCCC
Confidence 34677777 888776642 25689999999887543 3 56889999994 4778777654 3
Q ss_pred e--EEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCC-------------------------
Q psy9598 587 C--IGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGD------------------------- 639 (1915)
Q Consensus 587 t--I~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~D------------------------- 639 (1915)
. |.+|++.++....... +.. +.+++|+|+|+.|+.++.+
T Consensus 84 ~~~l~~~~~~~g~~~~l~~-------------~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 149 (347)
T 2gop_A 84 VSEIWVADLETLSSKKILE-------------AKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDG 149 (347)
T ss_dssp EEEEEEEETTTTEEEEEEE-------------ESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------
T ss_pred cceEEEEECCCCceEEEEc-------------CCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccC
Confidence 3 7777777654221111 113 8899999999988887642
Q ss_pred --CeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCC-------cEEEEEccCCceEEeeecccccCCC
Q psy9598 640 --HHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDG-------TALIWYYKCSQWRFIRLDMNTCLPH 710 (1915)
Q Consensus 640 --g~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG-------~I~IWDl~~~~~~~~~~~~~~~~~~ 710 (1915)
..|.+||+.+. ..+..+.. . .+..++|+|+| ++++++.++ ...||.+.++....+.
T Consensus 150 ~~~~l~~~d~~~~---~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~l~--------- 214 (347)
T 2gop_A 150 EKTTFWIFDTESE---EVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKEEKMF--------- 214 (347)
T ss_dssp CEEEEEEEETTTT---EEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEEEEEE---------
T ss_pred ccceEEEEECCCC---eEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCceEEec---------
Confidence 56888888432 22123333 3 78899999999 777776552 4456655444322211
Q ss_pred CccccccccccccEEEEEECCCCCEEEEEEecC-------CeEEEEECCCCceEEEeeCCCCCeEE-EEEccCCCCEEEE
Q psy9598 711 TKETSDETNKKIKVTMVAWDASDRWVITAINFN-------FQIKIWDAFNGDLVQVLKGHTNEVFV-LESHPFDSRVLLS 782 (1915)
Q Consensus 711 ~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~D-------g~I~vwD~~tg~~i~~l~gH~~~V~s-l~~sp~dg~~LaS 782 (1915)
.+ ..+..+ +|+|++|+.++... ..|.+|| +++....+.+|...+.. +.|+ ++ ++++
T Consensus 215 --------~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s--dg-~~~~ 278 (347)
T 2gop_A 215 --------EK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD--GK-VYFT 278 (347)
T ss_dssp --------EE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET--TE-EEEE
T ss_pred --------cC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc--Cc-EEEE
Confidence 01 233333 89999988877522 4788888 67666666677778886 8897 56 9999
Q ss_pred EecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEEeCCCeE-EEEeCC
Q psy9598 783 AGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHL-LVYGLG 844 (1915)
Q Consensus 783 gs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~dG~I-~Iwdl~ 844 (1915)
++.+|.++|| +.++.. ..+. .+.+.|.+++|+| .++++++.++.. .||.+.
T Consensus 279 ~~~~~~~~l~-~~~g~~---~~~~-----~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 279 LFEEGSVNLY-IWDGEI---KPIA-----KGRHWIMGFDVDE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp EEETTEEEEE-EESSSE---EEEE-----CSSSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred EecCCcEEEE-EcCCce---EEEe-----cCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence 9999999999 875433 2221 2357799999999 677777777654 667665
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=6.3e-12 Score=169.92 Aligned_cols=282 Identities=10% Similarity=0.079 Sum_probs=187.8
Q ss_pred CCCCEEEEEECCC-----cEEEEECCCCcEEEEE------eCCCCCEEEEEEeCCCCEEEEEeCCC-----cEEEEECCC
Q psy9598 486 KLGEVIVTGADDL-----LIKLWRARDGKLLATL------RGCSGEISDIAIDNRNILLAAGTVDK-----TIRIWNLQT 549 (1915)
Q Consensus 486 pdg~~LaTGs~Dg-----~I~IWd~~tg~~~~~l------~gH~~~I~~Lafspdg~~LaSgs~Dg-----tIrVWDl~t 549 (1915)
|+|.+++....++ .|.+.+..++.....+ .+|...+..++|||||++||.++.++ +|+|||+.+
T Consensus 81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~t 160 (710)
T 2xdw_A 81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG 160 (710)
T ss_dssp EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT
T ss_pred EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCC
Confidence 6676666544321 3344444444332222 23445688999999999998776543 899999999
Q ss_pred CceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCe----------------EEEEecccCccccceeccCccccccc
Q psy9598 550 LAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGC----------------IGFWKYKLDIDISKTVFHEPVMFNER 613 (1915)
Q Consensus 550 g~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~Dgt----------------I~iWDl~~~~~~~~~~~~~~~~~~~~ 613 (1915)
++.+.....+. .+.+++|+|+ ++.|+.++.++. |.+|++.++.....+.+.
T Consensus 161 g~~~~~~~~~~-~~~~~~wspD----g~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~-------- 227 (710)
T 2xdw_A 161 AKELPDVLERV-KFSCMAWTHD----GKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAE-------- 227 (710)
T ss_dssp TEEEEEEEEEE-CSCCEEECTT----SSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEEC--------
T ss_pred CCCCcccccCc-ccceEEEEeC----CCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEec--------
Confidence 98776433332 3678999994 488888887766 999999876532122221
Q ss_pred cCCCCCceEEEEECCCCcEEEEEeC-----CCeEEEEEecCCC----CCceeEEeccCCCCeeEEEEcCCCCEEEEEeCC
Q psy9598 614 IRPGNAHILCSSFSPGGLFLATGSG-----DHHVRVYKMDGVD----SPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRD 684 (1915)
Q Consensus 614 ~~~~~~~V~~l~fspdg~~Lasgs~-----Dg~I~IwDl~~~~----~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~D 684 (1915)
...+...+..+.|+|+|++|+.++. +..|++||+.+.. ....+..+..+...+.. .|+++|..|+..+..
T Consensus 228 ~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~ 306 (710)
T 2xdw_A 228 FPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNR 306 (710)
T ss_dssp CTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECT
T ss_pred cCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECC
Confidence 1123355788999999999888765 5689999985410 11124445566666655 488899887776653
Q ss_pred ----CcEEEEEccCCc---eEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCC--eEEEEECCCCc
Q psy9598 685 ----GTALIWYYKCSQ---WRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNF--QIKIWDAFNGD 755 (1915)
Q Consensus 685 ----G~I~IWDl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg--~I~vwD~~tg~ 755 (1915)
+.|.+||+.++. |..+.. ......+..++|++++.+++++.. ++ .|++|++.+|+
T Consensus 307 ~~~~~~l~~~d~~~~~~~~~~~l~~---------------~~~~~~~~~~~~~~~~~lv~~~~~-~g~~~l~~~~~~~g~ 370 (710)
T 2xdw_A 307 HSPNYRLINIDFTDPEESKWKVLVP---------------EHEKDVLEWVACVRSNFLVLCYLH-DVKNTLQLHDLATGA 370 (710)
T ss_dssp TCTTCEEEEEETTSCCGGGCEEEEC---------------CCSSCEEEEEEEETTTEEEEEEEE-TTEEEEEEEETTTCC
T ss_pred CCCCCEEEEEeCCCCCcccceeccC---------------CCCCCeEEEEEEEcCCEEEEEEEE-CCEEEEEEEECCCCC
Confidence 359999987653 121110 001135777889876666666666 77 46777887888
Q ss_pred eEEEeeCCCCCeEEEEEccCCCCEEE-EEe---cCceEEEEECCCCc
Q psy9598 756 LVQVLKGHTNEVFVLESHPFDSRVLL-SAG---HDGLIIIWDILSSK 798 (1915)
Q Consensus 756 ~i~~l~gH~~~V~sl~~sp~dg~~La-Sgs---~DG~I~IWdl~s~~ 798 (1915)
.+..+..+.+.|..++++| ++..|+ +.+ ..++|++||+.+++
T Consensus 371 ~~~~l~~~~~~v~~~~~s~-d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 371 LLKIFPLEVGSVVGYSGQK-KDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEEECCCSSEEEEEECCT-TCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEecCCCCceEEEEecCC-CCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 8888888888899999999 665444 433 35789999998877
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.47 E-value=9.8e-12 Score=148.76 Aligned_cols=245 Identities=11% Similarity=0.019 Sum_probs=172.0
Q ss_pred EecCCCCcEEEEEEcCCCC-EEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCC
Q psy9598 471 VNLGHLSAVFCVLFDKLGE-VIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQT 549 (1915)
Q Consensus 471 ~l~gH~~~V~~vafspdg~-~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~t 549 (1915)
.+..+.....+++|+|+|+ +++++..++.|.+|+..++ ...+..+...+.+|+|+++|.++++...++.|.+||..+
T Consensus 22 ~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~ 99 (296)
T 3e5z_A 22 RLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPG 99 (296)
T ss_dssp EEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTT
T ss_pred EEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCC
Confidence 4445667788999999998 7888888999999999887 667777888899999999999888877778999999988
Q ss_pred CceEEEeecC----CCCeEEEEeccCccCCCcEEEEEeC-----------------CCeEEEEecccCccccceeccCcc
Q psy9598 550 LAPISVLVGH----QGIITGVNFCPLEVNGFNYLASTST-----------------DGCIGFWKYKLDIDISKTVFHEPV 608 (1915)
Q Consensus 550 g~~~~~l~~h----~~~V~sl~fsp~~~~d~~~L~sgs~-----------------DgtI~iWDl~~~~~~~~~~~~~~~ 608 (1915)
+......... ...+.++++.|+ +.++++.+. .+.|..|+.. +. ....
T Consensus 100 g~~~~~~~~~~~~~~~~~~~i~~d~~----G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~------ 167 (296)
T 3e5z_A 100 GEWESIADSFEGKKLNSPNDVCLAPD----GSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAP------ 167 (296)
T ss_dssp CCEEEEECEETTEECCCCCCEEECTT----SCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEE------
T ss_pred CcEEEEeeccCCCCCCCCCCEEECCC----CCEEEECCccccccccccccccccCCCcEEEEECCC-CC-EEEe------
Confidence 8765443322 235678999984 477776321 2345545443 21 1111
Q ss_pred ccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCC-ceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcE
Q psy9598 609 MFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSP-LGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTA 687 (1915)
Q Consensus 609 ~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~-~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I 687 (1915)
..+......++|+|+|+.|++.+.++.|.+|++...... .....+..+...+.+|+++++|.+++++ ++.|
T Consensus 168 ------~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v 239 (296)
T 3e5z_A 168 ------IRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGV 239 (296)
T ss_dssp ------ECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEE
T ss_pred ------ecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeE
Confidence 122355788999999998877888899999999522222 1112223456677899999999866666 8899
Q ss_pred EEEEccCCceEEeeecccccCCCCccccccccccccEEEEEE-CCCCCEEEEEEecCCeEEEEECCCCceE
Q psy9598 688 LIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAW-DASDRWVITAINFNFQIKIWDAFNGDLV 757 (1915)
Q Consensus 688 ~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~-spdg~~L~t~s~~Dg~I~vwD~~tg~~i 757 (1915)
.+|+.. ++..... ..+.. +++++| ++++..|++++. +.|..++..+..+.
T Consensus 240 ~~~~~~-g~~~~~~----------------~~~~~-~~~~~f~~~d~~~L~v~t~--~~l~~~~~~~~~~~ 290 (296)
T 3e5z_A 240 HVLTPD-GDELGRV----------------LTPQT-TSNLCFGGPEGRTLYMTVS--TEFWSIETNVRGLE 290 (296)
T ss_dssp EEECTT-SCEEEEE----------------ECSSC-CCEEEEESTTSCEEEEEET--TEEEEEECSCCBCC
T ss_pred EEECCC-CCEEEEE----------------ECCCC-ceeEEEECCCCCEEEEEcC--CeEEEEEccccccc
Confidence 999986 4322211 11223 778889 689999988875 45666777665543
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=2.7e-10 Score=135.39 Aligned_cols=285 Identities=8% Similarity=-0.012 Sum_probs=197.6
Q ss_pred EeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEe-ecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEe
Q psy9598 514 LRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVL-VGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWK 592 (1915)
Q Consensus 514 l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l-~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWD 592 (1915)
+..+...+.+|+++++|.++++...++.|.+||.. +...... ..+...+.+|++.+. +.++++...++.|..|+
T Consensus 10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~----g~l~v~~~~~~~i~~~~ 84 (299)
T 2z2n_A 10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSD----GEVWFTENAANKIGRIT 84 (299)
T ss_dssp CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTT----SCEEEEETTTTEEEEEC
T ss_pred CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCC----CCEEEeCCCCCeEEEEC
Confidence 34455789999999999988877768899999988 5543322 234567899999874 46777777788999998
Q ss_pred cccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEc
Q psy9598 593 YKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWS 672 (1915)
Q Consensus 593 l~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fs 672 (1915)
.. +. ...... ......+.+++++++|.++++...++.|.+||.. . .........+...+.++++.
T Consensus 85 ~~-g~-~~~~~~----------~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~-g--~~~~~~~~~~~~~~~~i~~~ 149 (299)
T 2z2n_A 85 KK-GI-IKEYTL----------PNPDSAPYGITEGPNGDIWFTEMNGNRIGRITDD-G--KIREYELPNKGSYPSFITLG 149 (299)
T ss_dssp TT-SC-EEEEEC----------SSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-C--CEEEEECSSTTCCEEEEEEC
T ss_pred CC-Cc-EEEEeC----------CCcCCCceeeEECCCCCEEEEecCCceEEEECCC-C--CEEEecCCCCCCCCceEEEc
Confidence 75 22 111111 0123568899999999888877778899999872 1 11222233345678999999
Q ss_pred CCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECC
Q psy9598 673 HSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAF 752 (1915)
Q Consensus 673 pdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~ 752 (1915)
++|.++++...++.|.+||. ++....... ......+..++++++|.++++... ++.|.+||.
T Consensus 150 ~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~---------------~~~~~~~~~i~~~~~g~l~v~~~~-~~~i~~~~~- 211 (299)
T 2z2n_A 150 SDNALWFTENQNNAIGRITE-SGDITEFKI---------------PTPASGPVGITKGNDDALWFVEII-GNKIGRITT- 211 (299)
T ss_dssp TTSCEEEEETTTTEEEEECT-TCCEEEEEC---------------SSTTCCEEEEEECTTSSEEEEETT-TTEEEEECT-
T ss_pred CCCCEEEEeCCCCEEEEEcC-CCcEEEeeC---------------CCCCCcceeEEECCCCCEEEEccC-CceEEEECC-
Confidence 99988887777889999998 655432110 012345778999999986665544 789999999
Q ss_pred CCceEEE-eeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEE
Q psy9598 753 NGDLVQV-LKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCAL 831 (1915)
Q Consensus 753 tg~~i~~-l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Las 831 (1915)
++..... +..+...+.+|++++ ++.++++...++.|.+||. ++. +..+. + ..+...+.++++ ++|.++++
T Consensus 212 ~g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~d~-~g~---~~~~~--~-~~~~~~~~~i~~-~~g~l~v~ 282 (299)
T 2z2n_A 212 SGEITEFKIPTPNARPHAITAGA-GIDLWFTEWGANKIGRLTS-NNI---IEEYP--I-QIKSAEPHGICF-DGETIWFA 282 (299)
T ss_dssp TCCEEEEECSSTTCCEEEEEECS-TTCEEEEETTTTEEEEEET-TTE---EEEEE--C-SSSSCCEEEEEE-CSSCEEEE
T ss_pred CCcEEEEECCCCCCCceeEEECC-CCCEEEeccCCceEEEECC-CCc---eEEEe--C-CCCCCccceEEe-cCCCEEEE
Confidence 7765432 334556789999999 7887777667889999998 333 22221 1 123457899999 88887776
Q ss_pred EeCCCeEEEEeCCCC
Q psy9598 832 TDSYGHLLVYGLGGF 846 (1915)
Q Consensus 832 g~~dG~I~Iwdl~s~ 846 (1915)
+. .+.|..++..+.
T Consensus 283 ~~-~~~l~~~~~~~~ 296 (299)
T 2z2n_A 283 ME-CDKIGKLTLIKD 296 (299)
T ss_dssp ET-TTEEEEEEEC--
T ss_pred ec-CCcEEEEEcCcc
Confidence 55 577888877654
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=6.2e-12 Score=170.00 Aligned_cols=247 Identities=11% Similarity=-0.022 Sum_probs=169.7
Q ss_pred CCCCcEEEEEEcCCCCEEEEEECCC-----cEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCc-------
Q psy9598 474 GHLSAVFCVLFDKLGEVIVTGADDL-----LIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKT------- 541 (1915)
Q Consensus 474 gH~~~V~~vafspdg~~LaTGs~Dg-----~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~Dgt------- 541 (1915)
+|...+.+++|||||++||.++.++ .|+|||+.+|+.+.....+ ..+.+++|+|||+.|+.++.++.
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~ 200 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGT 200 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSS
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCcccccccc
Confidence 5666789999999999999876644 8999999999877643322 23678999999999999988766
Q ss_pred ---------EEEEECCCCce--EEEee--cCCCCeEEEEeccCccCCCcEEEEEeC-----CCeEEEEeccc------Cc
Q psy9598 542 ---------IRIWNLQTLAP--ISVLV--GHQGIITGVNFCPLEVNGFNYLASTST-----DGCIGFWKYKL------DI 597 (1915)
Q Consensus 542 ---------IrVWDl~tg~~--~~~l~--~h~~~V~sl~fsp~~~~d~~~L~sgs~-----DgtI~iWDl~~------~~ 597 (1915)
|++|++.++.. ...+. .|...+.++.|+|+ +++|+.++. +..|.+||+.+ +.
T Consensus 201 ~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpD----g~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~ 276 (710)
T 2xdw_A 201 ETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDD----GRYVLLSIREGCDPVNRLWYCDLQQESNGITGI 276 (710)
T ss_dssp CCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTT----SCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSS
T ss_pred ccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCC----CCEEEEEEEccCCCccEEEEEECcccccccCCc
Confidence 99999988763 22333 35566889999994 477777664 56899999876 32
Q ss_pred c-ccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCC----CeEEEEEecCCCCCceeEEeccCCC--CeeEEE
Q psy9598 598 D-ISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGD----HHVRVYKMDGVDSPLGILEVEEHSD--KVDSIQ 670 (1915)
Q Consensus 598 ~-~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~D----g~I~IwDl~~~~~~~~i~~l~~h~~--~V~sl~ 670 (1915)
. ...+. .+...+.. .|+++|..|+..+.. +.|.+|++.+.. ......+..|.. .+.+++
T Consensus 277 ~~~~~l~------------~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~-~~~~~~l~~~~~~~~~~~~~ 342 (710)
T 2xdw_A 277 LKWVKLI------------DNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPE-ESKWKVLVPEHEKDVLEWVA 342 (710)
T ss_dssp CCCEEEE------------CSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCC-GGGCEEEECCCSSCEEEEEE
T ss_pred cceEEee------------CCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCC-cccceeccCCCCCCeEEEEE
Confidence 1 11111 12233333 488888877766553 369999985432 112234445544 688899
Q ss_pred EcCCCCEEEEEeCCCcEE--EEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEe---cCCe
Q psy9598 671 WSHSHLRFVSGSRDGTAL--IWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAIN---FNFQ 745 (1915)
Q Consensus 671 fspdg~~L~sgs~DG~I~--IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~---~Dg~ 745 (1915)
|++++.+++++..||..+ +|++.++...... ..+...+..+++++++..|+.+.+ ..+.
T Consensus 343 ~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l----------------~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~ 406 (710)
T 2xdw_A 343 CVRSNFLVLCYLHDVKNTLQLHDLATGALLKIF----------------PLEVGSVVGYSGQKKDTEIFYQFTSFLSPGI 406 (710)
T ss_dssp EETTTEEEEEEEETTEEEEEEEETTTCCEEEEE----------------CCCSSEEEEEECCTTCSEEEEEEECSSCCCE
T ss_pred EEcCCEEEEEEEECCEEEEEEEECCCCCEEEec----------------CCCCceEEEEecCCCCCEEEEEEeCCCCCCE
Confidence 997777888888898654 5565455422111 112456788999999987775543 2468
Q ss_pred EEEEECCCCc
Q psy9598 746 IKIWDAFNGD 755 (1915)
Q Consensus 746 I~vwD~~tg~ 755 (1915)
|++||+.+++
T Consensus 407 i~~~d~~tg~ 416 (710)
T 2xdw_A 407 IYHCDLTKEE 416 (710)
T ss_dssp EEEEETTSSS
T ss_pred EEEEECCCCc
Confidence 9999998887
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.42 E-value=7.4e-12 Score=168.79 Aligned_cols=277 Identities=9% Similarity=-0.021 Sum_probs=179.2
Q ss_pred CCCCEEEEEECCC-----cEEEEECCCCcEEEEE------eCCCCCEEEEEEeCCCCEEE-----EEeCCCcEEEEECCC
Q psy9598 486 KLGEVIVTGADDL-----LIKLWRARDGKLLATL------RGCSGEISDIAIDNRNILLA-----AGTVDKTIRIWNLQT 549 (1915)
Q Consensus 486 pdg~~LaTGs~Dg-----~I~IWd~~tg~~~~~l------~gH~~~I~~Lafspdg~~La-----Sgs~DgtIrVWDl~t 549 (1915)
|+|.+++....++ .|.+.+...+.....+ .+|...+.+++|||||++|| +|+.+.+|+|||+.+
T Consensus 77 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~t 156 (695)
T 2bkl_A 77 RRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDS 156 (695)
T ss_dssp EETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTT
T ss_pred EECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCC
Confidence 6777777665543 2344444455433333 24666799999999999998 344457899999999
Q ss_pred CceEEEeecCCCCe--EEEEeccCccCCCcEEEEEeCCCe-------------EEEEecccCccccceeccCcccccccc
Q psy9598 550 LAPISVLVGHQGII--TGVNFCPLEVNGFNYLASTSTDGC-------------IGFWKYKLDIDISKTVFHEPVMFNERI 614 (1915)
Q Consensus 550 g~~~~~l~~h~~~V--~sl~fsp~~~~d~~~L~sgs~Dgt-------------I~iWDl~~~~~~~~~~~~~~~~~~~~~ 614 (1915)
+..+. ..+...+ .+++|+|+ +..|+.++.|.. |.+|++.++.....+.+. .
T Consensus 157 g~~~~--~~~~~~~~~~~~~wspD----g~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~--------~ 222 (695)
T 2bkl_A 157 GEWSK--VDVIEGGKYATPKWTPD----SKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHE--------R 222 (695)
T ss_dssp CCBCS--SCCBSCCTTCCCEECTT----SSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEEC--------C
T ss_pred CCCcC--CcccCcccccceEEecC----CCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEe--------c
Confidence 88641 1122222 68999994 588999888776 999999877532222222 1
Q ss_pred CCCCCceEEEEECCCCcEEEEEeCCC----eEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEe---CCCcE
Q psy9598 615 RPGNAHILCSSFSPGGLFLATGSGDH----HVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGS---RDGTA 687 (1915)
Q Consensus 615 ~~~~~~V~~l~fspdg~~Lasgs~Dg----~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs---~DG~I 687 (1915)
..+...+.++.|+|+|++|+.++.++ .|.+|+.. .. ....+..+...+....| ++|.+++++. .++.|
T Consensus 223 ~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~---~~-~~~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l 297 (695)
T 2bkl_A 223 TGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPG---EK-DFRLLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRV 297 (695)
T ss_dssp CCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTT---CS-SCEEEEECSSCCEEEEE-ETTEEEEEECTTCTTCEE
T ss_pred CCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCC---CC-ceEEeecCCCceEEEEe-cCCcEEEEECCCCCCCEE
Confidence 12335688999999999998877665 55555432 11 23344556666667667 5666444443 25789
Q ss_pred EEEEccCCc---eEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECC-CCceEEEeeCC
Q psy9598 688 LIWYYKCSQ---WRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAF-NGDLVQVLKGH 763 (1915)
Q Consensus 688 ~IWDl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~-tg~~i~~l~gH 763 (1915)
.+||+.++. |..+.. ......+..++|+ ++.++++... |+..+||.+. ++..+..+..+
T Consensus 298 ~~~d~~~~~~~~~~~l~~---------------~~~~~~l~~~~~~-~~~lv~~~~~-dg~~~l~~~~~~g~~~~~l~~~ 360 (695)
T 2bkl_A 298 FEVDPAKPARASWKEIVP---------------EDSSASLLSVSIV-GGHLSLEYLK-DATSEVRVATLKGKPVRTVQLP 360 (695)
T ss_dssp EEEBTTBCSGGGCEEEEC---------------CCSSCEEEEEEEE-TTEEEEEEEE-TTEEEEEEEETTCCEEEECCCS
T ss_pred EEEeCCCCCccCCeEEec---------------CCCCCeEEEEEEE-CCEEEEEEEE-CCEEEEEEEeCCCCeeEEecCC
Confidence 999987654 122110 0113456778887 5556666665 8888877654 46667777665
Q ss_pred -CCCeEEEEEccCCCCEEE-EEe---cCceEEEEECCCCcc
Q psy9598 764 -TNEVFVLESHPFDSRVLL-SAG---HDGLIIIWDILSSKQ 799 (1915)
Q Consensus 764 -~~~V~sl~~sp~dg~~La-Sgs---~DG~I~IWdl~s~~~ 799 (1915)
.+.|..++++| ++..|+ +.+ ..++|++||+.+++.
T Consensus 361 ~~~~v~~~~~s~-d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 361 GVGAASNLMGLE-DLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp SSSEECCCBSCT-TCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred CCeEEEEeecCC-CCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 66788888998 666555 332 357899999988764
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.42 E-value=4e-11 Score=146.14 Aligned_cols=272 Identities=7% Similarity=-0.082 Sum_probs=185.5
Q ss_pred CCCcEEEEECCCCcEEEEEe------CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEec
Q psy9598 496 DDLLIKLWRARDGKLLATLR------GCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFC 569 (1915)
Q Consensus 496 ~Dg~I~IWd~~tg~~~~~l~------gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fs 569 (1915)
.++.|.+||..+++....+. .......+|++. ++.++++...++.|.+||..+++.+..+. .......|+++
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~ 92 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFL 92 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEE
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEe
Confidence 37899999999998776541 122346778875 35556666668999999999999988885 34678899998
Q ss_pred cCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEe-CCCeEEEEEec
Q psy9598 570 PLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGS-GDHHVRVYKMD 648 (1915)
Q Consensus 570 p~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs-~Dg~I~IwDl~ 648 (1915)
+. +.++++...++.|.+||..++.....+..... .........+++ .++.++++.. .++.|.+||+.
T Consensus 93 ~~----g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~-------~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~ 160 (328)
T 3dsm_A 93 SD----EKAYVTQIWDYRIFIINPKTYEITGYIECPDM-------DMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTE 160 (328)
T ss_dssp ET----TEEEEEEBSCSEEEEEETTTTEEEEEEECTTC-------CTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETT
T ss_pred CC----CeEEEEECCCCeEEEEECCCCeEEEEEEcCCc-------cccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECC
Confidence 73 35555554899999999988765433332210 000113445666 4454444443 48899999984
Q ss_pred CCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCC----------CcEEEEEccCCceEEeeecccccCCCCccccccc
Q psy9598 649 GVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRD----------GTALIWYYKCSQWRFIRLDMNTCLPHTKETSDET 718 (1915)
Q Consensus 649 ~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~D----------G~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~ 718 (1915)
+ ...+..+.. ......++++++|.+++++..+ +.|.+||..+++...... .
T Consensus 161 t---~~~~~~i~~-g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~-~-------------- 221 (328)
T 3dsm_A 161 T---DKVVDELTI-GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFK-F-------------- 221 (328)
T ss_dssp T---TEEEEEEEC-SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEE-C--------------
T ss_pred C---CeEEEEEEc-CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEe-c--------------
Confidence 3 233333332 2345788999999877776655 789999998876443210 0
Q ss_pred cccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEE--eeCCCCCeEEEEEccCCCCEEEEE----ecCceEEEE
Q psy9598 719 NKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQV--LKGHTNEVFVLESHPFDSRVLLSA----GHDGLIIIW 792 (1915)
Q Consensus 719 ~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~--l~gH~~~V~sl~~sp~dg~~LaSg----s~DG~I~IW 792 (1915)
........++|+|++.+|+++. +.|.+||..+++.... +..+.....+++++|.++.++++. ..++.|.+|
T Consensus 222 ~~g~~p~~la~~~d~~~lyv~~---~~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~ 298 (328)
T 3dsm_A 222 KLGDWPSEVQLNGTRDTLYWIN---NDIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRY 298 (328)
T ss_dssp CTTCCCEEEEECTTSCEEEEES---SSEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEE
T ss_pred CCCCCceeEEEecCCCEEEEEc---cEEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEE
Confidence 0123568899999999998874 4899999988876421 222245689999999667777777 678999999
Q ss_pred ECCCCccccceeee
Q psy9598 793 DILSSKQRGYKWFH 806 (1915)
Q Consensus 793 dl~s~~~~~~~~~~ 806 (1915)
|.. ++. +..+.
T Consensus 299 d~~-g~~--~~~i~ 309 (328)
T 3dsm_A 299 SPQ-GKL--IDEFY 309 (328)
T ss_dssp CTT-CCE--EEEEE
T ss_pred CCC-CCE--EEEEE
Confidence 998 776 55544
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.42 E-value=3.2e-11 Score=144.26 Aligned_cols=254 Identities=11% Similarity=-0.069 Sum_probs=176.6
Q ss_pred CcEEEEEeCCCCCEEEEEEeCCCC-EEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCC
Q psy9598 508 GKLLATLRGCSGEISDIAIDNRNI-LLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDG 586 (1915)
Q Consensus 508 g~~~~~l~gH~~~I~~Lafspdg~-~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~Dg 586 (1915)
+..+..+..+.....+++|+++|+ +++++..++.|.+|+..++ ...+..+...+.+++|+++ +.++++...++
T Consensus 17 ~~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~d----g~l~v~~~~~~ 90 (296)
T 3e5z_A 17 GAEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQ----GHLIACSHGLR 90 (296)
T ss_dssp TCCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTT----CCEEEEETTTT
T ss_pred CCcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCC----CcEEEEecCCC
Confidence 344455556677789999999998 7888888999999999987 6667777888999999984 47777777778
Q ss_pred eEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCC---------------CeEEEEEecCCC
Q psy9598 587 CIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGD---------------HHVRVYKMDGVD 651 (1915)
Q Consensus 587 tI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~D---------------g~I~IwDl~~~~ 651 (1915)
.|.+||..++.......... ......+.+++++++|.++++.+.. +.-.||.+...
T Consensus 91 ~i~~~d~~~g~~~~~~~~~~--------~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~- 161 (296)
T 3e5z_A 91 RLERQREPGGEWESIADSFE--------GKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD- 161 (296)
T ss_dssp EEEEECSTTCCEEEEECEET--------TEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-
T ss_pred eEEEEcCCCCcEEEEeeccC--------CCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-
Confidence 99999987764321111000 0011346789999999988873211 11245544322
Q ss_pred CCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEcc-CCce-EEeeecccccCCCCccccccccccccEEEEEE
Q psy9598 652 SPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYK-CSQW-RFIRLDMNTCLPHTKETSDETNKKIKVTMVAW 729 (1915)
Q Consensus 652 ~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~ 729 (1915)
..+..+..+.....+++|+|+|..|++.+.++.|.+|++. .+.. ...... ......+..+++
T Consensus 162 --g~~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~--------------~~~~~~p~~i~~ 225 (296)
T 3e5z_A 162 --GTLSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF--------------TVEPGKTDGLRV 225 (296)
T ss_dssp --SCEEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE--------------CCSSSCCCSEEE
T ss_pred --CCEEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe--------------eCCCCCCCeEEE
Confidence 2233445666778999999999988888888999999987 4443 110000 002233456899
Q ss_pred CCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCCCeEEEEEc-cCCCCEEEEEecCceEEEEECCCCcc
Q psy9598 730 DASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESH-PFDSRVLLSAGHDGLIIIWDILSSKQ 799 (1915)
Q Consensus 730 spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~s-p~dg~~LaSgs~DG~I~IWdl~s~~~ 799 (1915)
+++|.+++++ ++.|.+|+.. ++.+..+..+.. +++++|. | ++..|++++.+| |..++..+...
T Consensus 226 d~~G~l~v~~---~~~v~~~~~~-g~~~~~~~~~~~-~~~~~f~~~-d~~~L~v~t~~~-l~~~~~~~~~~ 289 (296)
T 3e5z_A 226 DAGGLIWASA---GDGVHVLTPD-GDELGRVLTPQT-TSNLCFGGP-EGRTLYMTVSTE-FWSIETNVRGL 289 (296)
T ss_dssp BTTSCEEEEE---TTEEEEECTT-SCEEEEEECSSC-CCEEEEEST-TSCEEEEEETTE-EEEEECSCCBC
T ss_pred CCCCCEEEEc---CCeEEEECCC-CCEEEEEECCCC-ceeEEEECC-CCCEEEEEcCCe-EEEEEcccccc
Confidence 9999866655 6789999986 888888888887 9999994 6 888888887764 44556655443
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.6e-11 Score=165.41 Aligned_cols=277 Identities=9% Similarity=-0.086 Sum_probs=175.5
Q ss_pred CCCCEEEEEeCCC-----cEEEEECCCCceEEEee------cCCCCeEEEEeccCccCCCcEEE-----EEeCCCeEEEE
Q psy9598 528 NRNILLAAGTVDK-----TIRIWNLQTLAPISVLV------GHQGIITGVNFCPLEVNGFNYLA-----STSTDGCIGFW 591 (1915)
Q Consensus 528 pdg~~LaSgs~Dg-----tIrVWDl~tg~~~~~l~------~h~~~V~sl~fsp~~~~d~~~L~-----sgs~DgtI~iW 591 (1915)
++|.+++....++ .|.+.+...+.....+. +|...+.+++|+|+ +++|+ .|+.+.+|++|
T Consensus 77 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPD----G~~la~~~~~~G~~~~~i~v~ 152 (695)
T 2bkl_A 77 RRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWD----GKKVAFAQKPNAADEAVLHVI 152 (695)
T ss_dssp EETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTT----SSEEEEEEEETTCSCCEEEEE
T ss_pred EECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCC----CCEEEEEECCCCCceEEEEEE
Confidence 5566555544332 23333444444333332 35557899999994 47777 33445689999
Q ss_pred ecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCe-------------EEEEEecCCCC-CceeE
Q psy9598 592 KYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHH-------------VRVYKMDGVDS-PLGIL 657 (1915)
Q Consensus 592 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~-------------I~IwDl~~~~~-~~~i~ 657 (1915)
|+.++..+...... . ....+++|+|||+.|+.++.+.. |++|++.+... ...+.
T Consensus 153 dl~tg~~~~~~~~~----------~--~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~ 220 (695)
T 2bkl_A 153 DVDSGEWSKVDVIE----------G--GKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVH 220 (695)
T ss_dssp ETTTCCBCSSCCBS----------C--CTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEE
T ss_pred ECCCCCCcCCcccC----------c--ccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEE
Confidence 99988643100000 0 11257899999999999988776 99999843321 12344
Q ss_pred EeccCCCCeeEEEEcCCCCEEEEEeCCC----cEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCC
Q psy9598 658 EVEEHSDKVDSIQWSHSHLRFVSGSRDG----TALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASD 733 (1915)
Q Consensus 658 ~l~~h~~~V~sl~fspdg~~L~sgs~DG----~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg 733 (1915)
....|...+.++.|+|+|++|+.++.++ .|.+|+..++.+..+. .+...+....| ++|
T Consensus 221 ~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~-----------------~~~~~~~~~~~-~~g 282 (695)
T 2bkl_A 221 ERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLV-----------------KGVGAKYEVHA-WKD 282 (695)
T ss_dssp CCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEE-----------------ECSSCCEEEEE-ETT
T ss_pred ecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEee-----------------cCCCceEEEEe-cCC
Confidence 4445667889999999999988877666 5666655444433221 12223344455 566
Q ss_pred CEEEEEEe---cCCeEEEEECCCCce---EEEeeCC-CCCeEEEEEccCCCCEEEEEecCceEEEEECC-CCccccceee
Q psy9598 734 RWVITAIN---FNFQIKIWDAFNGDL---VQVLKGH-TNEVFVLESHPFDSRVLLSAGHDGLIIIWDIL-SSKQRGYKWF 805 (1915)
Q Consensus 734 ~~L~t~s~---~Dg~I~vwD~~tg~~---i~~l~gH-~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~-s~~~~~~~~~ 805 (1915)
. |+..+. .++.|.+||+.++.. ...+..+ ...|..++|+ ++.+++++..||..+||.+. ++.. ...+
T Consensus 283 ~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~--~~~lv~~~~~dg~~~l~~~~~~g~~--~~~l 357 (695)
T 2bkl_A 283 R-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV--GGHLSLEYLKDATSEVRVATLKGKP--VRTV 357 (695)
T ss_dssp E-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE--TTEEEEEEEETTEEEEEEEETTCCE--EEEC
T ss_pred c-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE--CCEEEEEEEECCEEEEEEEeCCCCe--eEEe
Confidence 6 555443 257899999988763 3334333 4467888887 57789999999998888765 2333 2222
Q ss_pred eeeecCCCCcceEEEEEcCCCCEEEEEeC----CCeEEEEeCCCCc
Q psy9598 806 HNIVEGQGEGALFDGKWSPDGTTCALTDS----YGHLLVYGLGGFK 847 (1915)
Q Consensus 806 ~~~~~~~~~~~V~~vafSpdg~~Lasg~~----dG~I~Iwdl~s~~ 847 (1915)
...+.+.|..++++|++..|+++.. .+.|++|++.+++
T Consensus 358 ----~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 358 ----QLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp ----CCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred ----cCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 2233567788899999987775443 3789999998875
|
| >3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A | Back alignment and structure |
|---|
Probab=99.39 E-value=2.8e-13 Score=146.49 Aligned_cols=96 Identities=16% Similarity=0.300 Sum_probs=86.6
Q ss_pred hHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCccccCCCcCCHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhhcCCC
Q psy9598 117 NWKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQNK 196 (1915)
Q Consensus 117 ~~~~~~~~il~~l~~~~~~~~F~~pvd~~~~pdY~~iIk~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~Lif~N~~~yN~~~ 196 (1915)
++...+..||..|..++.++||+.. .+|.||||.||++||+.+.|.++.+|..||.|||.||.+||.+.
T Consensus 75 el~~~l~~vl~~L~~~~~s~~~~~y-----------~~k~PmDL~~i~kKl~~~~Y~s~~eF~~Dv~lIf~n~~~~~~~~ 143 (183)
T 3lqh_A 75 ELQISLKQVLTALLNSRTTSHLLRY-----------RQQQPLDLEGVKRKMDQGNYTSVLEFSDDIVKIIQAAINSDGGQ 143 (183)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHTC-----------CC--CCSHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHHHhccccHhhhhh-----------hhcCCccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhccCCC
Confidence 4566688999999999999999873 25999999999999999999999999999999999999999955
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy9598 197 RSKIYIMTTRLSEFAEEHLRRLTVRWNS 224 (1915)
Q Consensus 197 ~s~i~~~a~~l~~~f~~~~~~~~~~~~~ 224 (1915)
+.+.+++..|+.+|++++++++..++.
T Consensus 144 -~e~~~ag~~l~~~f~~~l~~vfpwf~~ 170 (183)
T 3lqh_A 144 -PEIKKANSMVKSFFIRQMERVFPWFSV 170 (183)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHCTTSCG
T ss_pred -hhhhhhhhHHHHHHHHHHHHHCCCCCc
Confidence 999999999999999999999999874
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.38 E-value=7.5e-10 Score=131.60 Aligned_cols=281 Identities=8% Similarity=-0.055 Sum_probs=195.2
Q ss_pred ecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEE-EEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCC
Q psy9598 472 NLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLA-TLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTL 550 (1915)
Q Consensus 472 l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~-~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg 550 (1915)
+......+.+|+++++|.++++...++.|.+|+.. +.... .+..+...+.+|+++++|.++++...++.|.+||.. +
T Consensus 15 ~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g 92 (300)
T 2qc5_A 15 LSIPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-G 92 (300)
T ss_dssp CSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred cCCCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-C
Confidence 44556789999999999988877778999999987 65543 233344679999999999988887778899999988 5
Q ss_pred ceEE-EeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCC
Q psy9598 551 APIS-VLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPG 629 (1915)
Q Consensus 551 ~~~~-~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspd 629 (1915)
.... .+......+.++++.+. +.++++...++.|..|+.. +... .... ......+.++++.++
T Consensus 93 ~~~~~~~~~~~~~~~~i~~~~~----g~l~v~~~~~~~i~~~~~~-g~~~-~~~~----------~~~~~~~~~i~~d~~ 156 (300)
T 2qc5_A 93 GFTEYPLPQPDSGPYGITEGLN----GDIWFTQLNGDRIGKLTAD-GTIY-EYDL----------PNKGSYPAFITLGSD 156 (300)
T ss_dssp CEEEEECSSTTCCEEEEEECST----TCEEEEETTTTEEEEECTT-SCEE-EEEC----------SSTTCCEEEEEECTT
T ss_pred CeEEecCCCCCCCCccceECCC----CCEEEEccCCCeEEEECCC-CCEE-EccC----------CCCCCCceeEEECCC
Confidence 5432 22224467899999873 4677777778899999876 4321 1111 112356889999999
Q ss_pred CcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCC
Q psy9598 630 GLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLP 709 (1915)
Q Consensus 630 g~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~ 709 (1915)
|.+.++...++.|.+|+.. .. ........+...+.+|+++++|.++++....+.|.+|+. ++.......
T Consensus 157 g~l~v~~~~~~~i~~~~~~--g~-~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~------- 225 (300)
T 2qc5_A 157 NALWFTENQNNSIGRITNT--GK-LEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDI------- 225 (300)
T ss_dssp SSEEEEETTTTEEEEECTT--CC-EEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEEC-------
T ss_pred CCEEEEecCCCeEEEECCC--Cc-EEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEEC-------
Confidence 9977766667889999872 11 112223344567899999999987777777788999988 444332110
Q ss_pred CCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEE-eeCCCCCeEEEEEccCCCCEEEEEecCce
Q psy9598 710 HTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQV-LKGHTNEVFVLESHPFDSRVLLSAGHDGL 788 (1915)
Q Consensus 710 ~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~-l~gH~~~V~sl~~sp~dg~~LaSgs~DG~ 788 (1915)
......+.+++++++|...++... ++.|.+|+. ++..... +..+...+.++++.+ ++.++++.. . .
T Consensus 226 --------~~~~~~~~~i~~d~~g~l~v~~~~-~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~-~-~ 292 (300)
T 2qc5_A 226 --------PTPNARPHAITAGKNSEIWFTEWG-ANQIGRITN-DNTIQEYQLQTENAEPHGITFGK-DGSVWFALK-C-K 292 (300)
T ss_dssp --------SSTTCCEEEEEECSTTCEEEEETT-TTEEEEECT-TSCEEEEECCSTTCCCCCEEECT-TSCEEEECS-S-E
T ss_pred --------CCCCCCceEEEECCCCCEEEeccC-CCeEEEECC-CCcEEEEECCccCCccceeEeCC-CCCEEEEcc-C-c
Confidence 012345788999999985555544 789999998 4554322 333455688899998 787666554 4 6
Q ss_pred EEEEEC
Q psy9598 789 IIIWDI 794 (1915)
Q Consensus 789 I~IWdl 794 (1915)
|..++.
T Consensus 293 i~~~~p 298 (300)
T 2qc5_A 293 IGKLNL 298 (300)
T ss_dssp EEEEEE
T ss_pred eEEeCC
Confidence 766664
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.2e-10 Score=142.02 Aligned_cols=246 Identities=9% Similarity=-0.078 Sum_probs=172.1
Q ss_pred CcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEe
Q psy9598 477 SAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVL 556 (1915)
Q Consensus 477 ~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l 556 (1915)
....+++++ ++.++++...++.|.+||..+++.+.++.. ......|++++++.++++...++.|.+||+.+++....+
T Consensus 44 ~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~-~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i 121 (328)
T 3dsm_A 44 DVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITG-FTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYI 121 (328)
T ss_dssp SCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEEC-CSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEE
T ss_pred ccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCC-CCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEE
Confidence 456778885 345555556678999999999999998863 467899999999855555547899999999999888776
Q ss_pred ecCC-----CCeEEEEeccCccCCCcEEEEEe-CCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCC
Q psy9598 557 VGHQ-----GIITGVNFCPLEVNGFNYLASTS-TDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGG 630 (1915)
Q Consensus 557 ~~h~-----~~V~sl~fsp~~~~d~~~L~sgs-~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg 630 (1915)
.... .....|++ . ++.++++.. .++.|.+||+.++.....+... ....+++++++|
T Consensus 122 ~~g~~~~~~~~p~~i~~-~----~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g-------------~~p~~i~~~~dG 183 (328)
T 3dsm_A 122 ECPDMDMESGSTEQMVQ-Y----GKYVYVNCWSYQNRILKIDTETDKVVDELTIG-------------IQPTSLVMDKYN 183 (328)
T ss_dssp ECTTCCTTTCBCCCEEE-E----TTEEEEEECTTCCEEEEEETTTTEEEEEEECS-------------SCBCCCEECTTS
T ss_pred EcCCccccCCCcceEEE-E----CCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC-------------CCccceEEcCCC
Confidence 5433 14566777 2 234444444 4899999999987654433221 234578899999
Q ss_pred cEEEEEeCC----------CeEEEEEecCCCCCceeEEeccC-CCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEE
Q psy9598 631 LFLATGSGD----------HHVRVYKMDGVDSPLGILEVEEH-SDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRF 699 (1915)
Q Consensus 631 ~~Lasgs~D----------g~I~IwDl~~~~~~~~i~~l~~h-~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~ 699 (1915)
++++++..+ +.|.+||..+ ......+... ......|+|+|++.+|+++.. .|.+||+.+++...
T Consensus 184 ~l~v~~~~~~~~~~~~~~~~~v~~id~~t---~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~ 258 (328)
T 3dsm_A 184 KMWTITDGGYEGSPYGYEAPSLYRIDAET---FTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPV 258 (328)
T ss_dssp EEEEEBCCBCTTCSSCBCCCEEEEEETTT---TEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCS
T ss_pred CEEEEECCCccCCccccCCceEEEEECCC---CeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceee
Confidence 877776654 7899999843 2223233221 236889999999998888765 89999988776210
Q ss_pred eeecccccCCCCccccccccccccEEEEEECCCCCEEEEEE----ecCCeEEEEECCCCceEEEeeC
Q psy9598 700 IRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAI----NFNFQIKIWDAFNGDLVQVLKG 762 (1915)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s----~~Dg~I~vwD~~tg~~i~~l~g 762 (1915)
. . ...........++++|++..|+++. ..++.|.+||.. ++.+..+..
T Consensus 259 ~-----------~---~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~ 310 (328)
T 3dsm_A 259 R-----------P---FLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYV 310 (328)
T ss_dssp S-----------C---SBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEE
T ss_pred e-----------e---eecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEEe
Confidence 0 0 0001135678899999666666665 347899999997 988888763
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.36 E-value=3.8e-11 Score=141.02 Aligned_cols=241 Identities=7% Similarity=-0.042 Sum_probs=165.1
Q ss_pred cEEEEEEcCCCCEEE-EEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEe
Q psy9598 478 AVFCVLFDKLGEVIV-TGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVL 556 (1915)
Q Consensus 478 ~V~~vafspdg~~La-TGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l 556 (1915)
...+|+++++|.+++ +.+.++.|.+|+..++........+...+.+|+++++|.++++.. ++.|.+||..+.......
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~~ 103 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVLP 103 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEECC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEeeee
Confidence 778999999999777 547788999999866554332233445788999999999777666 889999998765543222
Q ss_pred ecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEE
Q psy9598 557 VGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATG 636 (1915)
Q Consensus 557 ~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasg 636 (1915)
......+.+|++.+. +.++++...++.|.+|+..+.... .. ...+...+.+++++++|.++++.
T Consensus 104 ~~~~~~p~~i~~~~~----g~l~v~~~~~~~i~~~~~~~~~~~--~~----------~~~~~~~p~~i~~~~~g~l~v~~ 167 (270)
T 1rwi_B 104 FDGLNYPEGLAVDTQ----GAVYVADRGNNRVVKLAAGSKTQT--VL----------PFTGLNDPDGVAVDNSGNVYVTD 167 (270)
T ss_dssp CCSCSSEEEEEECTT----CCEEEEEGGGTEEEEECTTCCSCE--EC----------CCCSCCSCCCEEECTTCCEEEEE
T ss_pred cCCcCCCcceEECCC----CCEEEEECCCCEEEEEECCCceeE--ee----------ccccCCCceeEEEeCCCCEEEEE
Confidence 233367899999984 467777777889999975443211 00 01112356789999999877777
Q ss_pred eCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccc
Q psy9598 637 SGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSD 716 (1915)
Q Consensus 637 s~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~ 716 (1915)
..++.|.+|+..+.. .......+...+.+|+++++|.++++...++.|.+|+.........
T Consensus 168 ~~~~~i~~~~~~~~~---~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~---------------- 228 (270)
T 1rwi_B 168 TDNNRVVKLEAESNN---QVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVL---------------- 228 (270)
T ss_dssp GGGTEEEEECTTTCC---EEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEEC----------------
T ss_pred CCCCEEEEEecCCCc---eEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceee----------------
Confidence 778899999984321 1222223336789999999998777777889999998865432110
Q ss_pred cccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCc
Q psy9598 717 ETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGD 755 (1915)
Q Consensus 717 ~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~ 755 (1915)
.......+.+++++++|..+++... ++.|++|++...+
T Consensus 229 ~~~~~~~p~~i~~~~~g~l~v~~~~-~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 229 PFTGLNTPLAVAVDSDRTVYVADRG-NDRVVKLTSLEHH 266 (270)
T ss_dssp CCCSCSCEEEEEECTTCCEEEEEGG-GTEEEEECCCGGG
T ss_pred ccCCCCCceeEEECCCCCEEEEECC-CCEEEEEcCCCcc
Confidence 0112246789999999986555555 9999999986543
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.35 E-value=2e-10 Score=140.82 Aligned_cols=306 Identities=10% Similarity=0.027 Sum_probs=198.1
Q ss_pred EEEcCCCCEEEEEEC-----CCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEe----------CCCcEEEEE
Q psy9598 482 VLFDKLGEVIVTGAD-----DLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGT----------VDKTIRIWN 546 (1915)
Q Consensus 482 vafspdg~~LaTGs~-----Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs----------~DgtIrVWD 546 (1915)
+...|++++|++... ++.|.+.|..+++.+.++.....+ . |+++|||++|++++ .++.|.+||
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD 115 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFD 115 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEE
Confidence 445788888888865 679999999999999999765555 4 99999999887765 367899999
Q ss_pred CCCCceEEEeecCC-------CCeEEEEeccCccCCCcEEEEEeC--CCeEEEEecccCccccceeccCccccccccCCC
Q psy9598 547 LQTLAPISVLVGHQ-------GIITGVNFCPLEVNGFNYLASTST--DGCIGFWKYKLDIDISKTVFHEPVMFNERIRPG 617 (1915)
Q Consensus 547 l~tg~~~~~l~~h~-------~~V~sl~fsp~~~~d~~~L~sgs~--DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~ 617 (1915)
+.+++.+..+.-.. .....++|+|+ +++|+++.. +++|.++|+.+++.+..+...
T Consensus 116 ~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spD----Gk~lyVan~~~~~~VsVID~~t~~vv~tI~v~------------ 179 (386)
T 3sjl_D 116 PVTLLPTADIELPDAPRFLVGTYPWMTSLTPD----GKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVP------------ 179 (386)
T ss_dssp TTTCCEEEEEEETTCCCCCBSCCGGGEEECTT----SSEEEEEECSSSCEEEEEETTTTEEEEEEECC------------
T ss_pred CCCCeEEEEEECCCccccccCCCCceEEEcCC----CCEEEEEEcCCCCeEEEEECCCCcEEEEEECC------------
Confidence 99999988875321 24567999994 477777763 689999999998765555332
Q ss_pred CCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccC----CCCee-EEEEc-CCCCEEEEEeCCCcEEEEE
Q psy9598 618 NAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEH----SDKVD-SIQWS-HSHLRFVSGSRDGTALIWY 691 (1915)
Q Consensus 618 ~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h----~~~V~-sl~fs-pdg~~L~sgs~DG~I~IWD 691 (1915)
+ ....+......+++.+.||.+.+.++...... ......+ ...+. ...|. ++|.+++ .+.+|.|.+.|
T Consensus 180 -g--~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v--~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d 253 (386)
T 3sjl_D 180 -D--CYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTP--EITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQID 253 (386)
T ss_dssp -S--EEEEEEEETTEEEEEETTSCEEEEECCSSSCC--EEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEE
T ss_pred -C--cceeecCCCceeEEECCCCCEEEEECCCCCeE--EEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEE
Confidence 1 01122223445666677777777777432221 1111111 12221 23554 5675444 55689999999
Q ss_pred ccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEec---------CCeEEEEECCCCceEEEeeC
Q psy9598 692 YKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINF---------NFQIKIWDAFNGDLVQVLKG 762 (1915)
Q Consensus 692 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~---------Dg~I~vwD~~tg~~i~~l~g 762 (1915)
+.+........ . .... ............+..+++++++..++++... .+.|.++|+.+++.+..+..
T Consensus 254 ~~~~~~~v~~~-~-~~~~--~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~v 329 (386)
T 3sjl_D 254 LSSGDAKFLPA-V-EALT--EAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM 329 (386)
T ss_dssp CTTSSCEECCC-E-ESSC--HHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE
T ss_pred CCCCcceeecc-e-eccc--cccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEEC
Confidence 87664221100 0 0000 0000000111223357779999999887531 25799999999999998863
Q ss_pred CCCCeEEEEEccCCCC-EEEEE-ecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCC
Q psy9598 763 HTNEVFVLESHPFDSR-VLLSA-GHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPD 825 (1915)
Q Consensus 763 H~~~V~sl~~sp~dg~-~LaSg-s~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpd 825 (1915)
- ..+++|++++ +++ +|+++ ..++.|.|+|..+++. +..+. ..+.-..+.+++|
T Consensus 330 g-~~~~~lavs~-D~~~~ly~tn~~~~~VsViD~~t~k~--~~~i~------~~~~p~~l~~s~d 384 (386)
T 3sjl_D 330 G-HEIDSINVSQ-DEKPLLYALSTGDKTLYIHDAESGEE--LRSVN------QLGHGPQVITTAD 384 (386)
T ss_dssp E-EEECEEEECS-SSSCEEEEEETTTTEEEEEETTTCCE--EEEEC------CCCSSCCEEEECC
T ss_pred C-CCcceEEECC-CCCeEEEEEcCCCCeEEEEECCCCcE--EEEec------CCCCCceeEECCc
Confidence 3 2578999999 765 66554 5589999999999988 66655 1233444555555
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.35 E-value=7.8e-11 Score=138.31 Aligned_cols=242 Identities=9% Similarity=-0.023 Sum_probs=167.4
Q ss_pred CEEEEEEeCCCCEEE-EEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCcc
Q psy9598 520 EISDIAIDNRNILLA-AGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDID 598 (1915)
Q Consensus 520 ~I~~Lafspdg~~La-Sgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~ 598 (1915)
...+|+++++|.+++ +.+.++.|.+|+..++........+...+.+|++.+. +.++++.. ++.|.+||..+...
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~----g~l~v~~~-~~~i~~~d~~~~~~ 99 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGA----GTVYVTDF-NNRVVTLAAGSNNQ 99 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTT----CCEEEEET-TTEEEEECTTCSCC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCC----CCEEEEcC-CCEEEEEeCCCceE
Confidence 678999999999777 5467899999998765543322334457889999884 36555555 88999999776532
Q ss_pred ccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEE
Q psy9598 599 ISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRF 678 (1915)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L 678 (1915)
. . +. ..+...+.+++++++|.++++...++.|.+|+... .........+...+.+|+++++|.++
T Consensus 100 ~-~--~~---------~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~---~~~~~~~~~~~~~p~~i~~~~~g~l~ 164 (270)
T 1rwi_B 100 T-V--LP---------FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGS---KTQTVLPFTGLNDPDGVAVDNSGNVY 164 (270)
T ss_dssp E-E--CC---------CCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTC---CSCEECCCCSCCSCCCEEECTTCCEE
T ss_pred e-e--ee---------cCCcCCCcceEECCCCCEEEEECCCCEEEEEECCC---ceeEeeccccCCCceeEEEeCCCCEE
Confidence 1 1 10 01225688999999999888777788999997522 12222122333467899999999977
Q ss_pred EEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEE
Q psy9598 679 VSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQ 758 (1915)
Q Consensus 679 ~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~ 758 (1915)
++...++.|.+||.......... ......+..++++++|..+++... ++.|.+|+........
T Consensus 165 v~~~~~~~i~~~~~~~~~~~~~~----------------~~~~~~p~~i~~d~~g~l~v~~~~-~~~v~~~~~~~~~~~~ 227 (270)
T 1rwi_B 165 VTDTDNNRVVKLEAESNNQVVLP----------------FTDITAPWGIAVDEAGTVYVTEHN-TNQVVKLLAGSTTSTV 227 (270)
T ss_dssp EEEGGGTEEEEECTTTCCEEECC----------------CSSCCSEEEEEECTTCCEEEEETT-TSCEEEECTTCSCCEE
T ss_pred EEECCCCEEEEEecCCCceEeec----------------ccCCCCceEEEECCCCCEEEEECC-CCcEEEEcCCCCccee
Confidence 77777889999998765532210 011245788999999965555544 8899999987655443
Q ss_pred EeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCcc
Q psy9598 759 VLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQ 799 (1915)
Q Consensus 759 ~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~ 799 (1915)
....+...+.+|++++ ++.++++...++.|.+|++...+.
T Consensus 228 ~~~~~~~~p~~i~~~~-~g~l~v~~~~~~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 228 LPFTGLNTPLAVAVDS-DRTVYVADRGNDRVVKLTSLEHHH 267 (270)
T ss_dssp CCCCSCSCEEEEEECT-TCCEEEEEGGGTEEEEECCCGGGS
T ss_pred eccCCCCCceeEEECC-CCCEEEEECCCCEEEEEcCCCccc
Confidence 3334446789999999 889999999999999999876544
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.35 E-value=7.8e-10 Score=137.04 Aligned_cols=285 Identities=11% Similarity=-0.004 Sum_probs=186.8
Q ss_pred EcCCCCEEEEEEC--CC---cEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEe----------CCCcEEEEECC
Q psy9598 484 FDKLGEVIVTGAD--DL---LIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGT----------VDKTIRIWNLQ 548 (1915)
Q Consensus 484 fspdg~~LaTGs~--Dg---~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs----------~DgtIrVWDl~ 548 (1915)
..|+++++++... .. +|.+||..+++.+.++.....+ .++|+|||++|+.+. .++.|.+||+.
T Consensus 28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~ 105 (373)
T 2mad_H 28 PGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPV 105 (373)
T ss_pred CCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECC
Confidence 4466776666543 22 8899999999999888754444 999999999998886 36789999999
Q ss_pred CCceEEEeecC-------CCCeEEEEeccCccCCCcEEEEEeC--CCeEEEEecccCccccc-eeccCccccccccCCCC
Q psy9598 549 TLAPISVLVGH-------QGIITGVNFCPLEVNGFNYLASTST--DGCIGFWKYKLDIDISK-TVFHEPVMFNERIRPGN 618 (1915)
Q Consensus 549 tg~~~~~l~~h-------~~~V~sl~fsp~~~~d~~~L~sgs~--DgtI~iWDl~~~~~~~~-~~~~~~~~~~~~~~~~~ 618 (1915)
+++.+..+... ......++|+|+ +++|++++. +++|.++| .++..+.. +...
T Consensus 106 t~~~~~~i~~~~~~~~~~g~~p~~~~~spD----G~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~------------- 167 (373)
T 2mad_H 106 TFLPIADIELPDAPRFDVGPYSWMNANTPN----NADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP------------- 167 (373)
T ss_pred CCcEEEEEECCCccccccCCCccceEECCC----CCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCC-------------
Confidence 98888776432 123458899994 488888764 57899999 88764333 2111
Q ss_pred CceEEEEECCCC-cEEEEEeCCCeEEEEEecCCCCCceeE--EeccCCCC-eeEEEEcCCCCEEEEEeCCCcEEEEEccC
Q psy9598 619 AHILCSSFSPGG-LFLATGSGDHHVRVYKMDGVDSPLGIL--EVEEHSDK-VDSIQWSHSHLRFVSGSRDGTALIWYYKC 694 (1915)
Q Consensus 619 ~~V~~l~fspdg-~~Lasgs~Dg~I~IwDl~~~~~~~~i~--~l~~h~~~-V~sl~fspdg~~L~sgs~DG~I~IWDl~~ 694 (1915)
.|+.+.|++ ..+++.+.||.+.+|+. .......+. .......+ .....|.+++..++..+..+.+.+.|+..
T Consensus 168 ---~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~ 243 (373)
T 2mad_H 168 ---TCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISA 243 (373)
T ss_pred ---ceEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccC
Confidence 124455554 45566778888888887 332211110 00011112 12345666666555555788999999876
Q ss_pred CceEEee-ecccccCCCCccccccccccccEEEEEECCCCCEEEEEEe---------cCCeEEEEECCCCceEEEeeCCC
Q psy9598 695 SQWRFIR-LDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAIN---------FNFQIKIWDAFNGDLVQVLKGHT 764 (1915)
Q Consensus 695 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~---------~Dg~I~vwD~~tg~~i~~l~gH~ 764 (1915)
....... ..... . ..............+++++++..|+++.. ..+.|.++|+.+++.+..+...
T Consensus 244 ~~~~v~~~~~~~~---~--~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g- 317 (373)
T 2mad_H 244 AGATNKAPIDALS---G--GRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLG- 317 (373)
T ss_pred CcceEeeeeeecC---C--cccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECC-
Confidence 5422111 00000 0 00001111233455789999999888753 1358999999999999988633
Q ss_pred CCeEEEEEccCCCC-EEEEEe-cCceEEEEECCCCcc
Q psy9598 765 NEVFVLESHPFDSR-VLLSAG-HDGLIIIWDILSSKQ 799 (1915)
Q Consensus 765 ~~V~sl~~sp~dg~-~LaSgs-~DG~I~IWdl~s~~~ 799 (1915)
....+++|+| +++ +|+++. .++.|.|||+.+++.
T Consensus 318 ~~p~~i~~s~-Dg~~~l~v~~~~~~~V~ViD~~t~~v 353 (373)
T 2mad_H 318 HDVDAISVAQ-DGGPDLYALSAGTEVLHIYDAGAGDQ 353 (373)
T ss_pred CCcCeEEECC-CCCeEEEEEcCCCCeEEEEECCCCCE
Confidence 3578999999 888 777777 589999999999887
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.32 E-value=8.8e-11 Score=159.49 Aligned_cols=279 Identities=14% Similarity=0.077 Sum_probs=175.5
Q ss_pred CCCCEEEEEECCCc---EEEEE--CC---CCcEEEEE------eCCCCCEEEEEEeCCCCEEEEEeCC-----CcEEEEE
Q psy9598 486 KLGEVIVTGADDLL---IKLWR--AR---DGKLLATL------RGCSGEISDIAIDNRNILLAAGTVD-----KTIRIWN 546 (1915)
Q Consensus 486 pdg~~LaTGs~Dg~---I~IWd--~~---tg~~~~~l------~gH~~~I~~Lafspdg~~LaSgs~D-----gtIrVWD 546 (1915)
|+|.+++....++. ..||- .. .+.....+ .+|...+..++|||||++||.++.+ .+|+|||
T Consensus 116 pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~d 195 (741)
T 1yr2_A 116 RRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVG 195 (741)
T ss_dssp EETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEE
T ss_pred EECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEE
Confidence 77888776654432 44554 33 33322221 2344468899999999999887654 4699999
Q ss_pred CCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCe--------------EEEEecccCccccceeccCcccccc
Q psy9598 547 LQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGC--------------IGFWKYKLDIDISKTVFHEPVMFNE 612 (1915)
Q Consensus 547 l~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~Dgt--------------I~iWDl~~~~~~~~~~~~~~~~~~~ 612 (1915)
+.++..+... .+...+.+++|+| + +.|+.++.++. |.+|++.++.....+.+..
T Consensus 196 l~tg~~~~~~-~~~~~~~~~~wsp----D-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~------ 263 (741)
T 1yr2_A 196 VADGKPLADE-LKWVKFSGLAWLG----N-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFAT------ 263 (741)
T ss_dssp TTTCCEEEEE-EEEEESCCCEEST----T-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECC------
T ss_pred CCCCCCCCcc-CCCceeccEEEEC----C-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEecc------
Confidence 9999876532 1222346788998 5 67777776554 8889887664322222221
Q ss_pred ccCCCCCceEEEEECCCCcEEEEEeCCC-----eEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCC---
Q psy9598 613 RIRPGNAHILCSSFSPGGLFLATGSGDH-----HVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRD--- 684 (1915)
Q Consensus 613 ~~~~~~~~V~~l~fspdg~~Lasgs~Dg-----~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~D--- 684 (1915)
..+...+.++.|+|+|++|+.++.++ .|++||+.+... .....+..+...+.... +++|..|+..+.+
T Consensus 264 --~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~-~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~ 339 (741)
T 1yr2_A 264 --PELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKI-GPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAP 339 (741)
T ss_dssp --TTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEE-CCCEEEECSSSSCEEEE-EEETTEEEEEECTTCT
T ss_pred --CCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCC-cccEEecCCCCceEEEE-eccCCEEEEEECCCCC
Confidence 12223578999999999988877544 899999954310 11334445555555553 4889888887764
Q ss_pred -CcEEEEEccCC--ceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECC-CCceEEEe
Q psy9598 685 -GTALIWYYKCS--QWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAF-NGDLVQVL 760 (1915)
Q Consensus 685 -G~I~IWDl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~-tg~~i~~l 760 (1915)
+.|.+||+.++ .+..+.. .+...+..++|+ ++.++++... ++..+||.+. ++..+..+
T Consensus 340 ~~~l~~~d~~~~~~~~~~l~~----------------~~~~~l~~~~~~-~~~lv~~~~~-dg~~~l~~~~~~g~~~~~l 401 (741)
T 1yr2_A 340 LKKIVRVDLSGSTPRFDTVVP----------------ESKDNLESVGIA-GNRLFASYIH-DAKSQVLAFDLDGKPAGAV 401 (741)
T ss_dssp TCEEEEEECSSSSCEEEEEEC----------------CCSSEEEEEEEE-BTEEEEEEEE-TTEEEEEEEETTSCEEEEC
T ss_pred CCEEEEEeCCCCccccEEEec----------------CCCCeEEEEEEE-CCEEEEEEEE-CCEEEEEEEeCCCCceeec
Confidence 45999998774 3332211 112235667777 4555555555 8877776543 46667777
Q ss_pred eC-CCCCeEEEEEccCCCC-EEEEEe---cCceEEEEECCCCcc
Q psy9598 761 KG-HTNEVFVLESHPFDSR-VLLSAG---HDGLIIIWDILSSKQ 799 (1915)
Q Consensus 761 ~g-H~~~V~sl~~sp~dg~-~LaSgs---~DG~I~IWdl~s~~~ 799 (1915)
.. +.+.|..++++| ++. ++++.+ ..++|++||+.+++.
T Consensus 402 ~~~~~~~v~~~~~s~-d~~~l~~~~ss~~~P~~i~~~d~~tg~~ 444 (741)
T 1yr2_A 402 SLPGIGSASGLSGRP-GDRHAYLSFSSFTQPATVLALDPATAKT 444 (741)
T ss_dssp BCSSSCEEEEEECCB-TCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred cCCCCeEEEEeecCC-CCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 65 367789999999 655 444443 358999999987764
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.31 E-value=2.9e-10 Score=134.91 Aligned_cols=225 Identities=11% Similarity=-0.039 Sum_probs=167.3
Q ss_pred CCCEEEEEECCCcEEEEECCCCcEEEEEeCCC-CCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCC-CCeE
Q psy9598 487 LGEVIVTGADDLLIKLWRARDGKLLATLRGCS-GEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQ-GIIT 564 (1915)
Q Consensus 487 dg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~-~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~-~~V~ 564 (1915)
.+++|++++.++.|.+||..+|+.+..+..+. ..+.+++++|+|++|+ +.++.|..||. +|+.+..+..+. ..+.
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~ 80 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQ 80 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCcccc
Confidence 46899999999999999999999999998876 5789999999999998 34788999999 899999888653 5788
Q ss_pred EEEeccCccCCCcEEEEEeC-CCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEE
Q psy9598 565 GVNFCPLEVNGFNYLASTST-DGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVR 643 (1915)
Q Consensus 565 sl~fsp~~~~d~~~L~sgs~-DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~ 643 (1915)
++.+.+ ++++|++.+. ++.|..+|. .++.+....+.... ..+......+++.++|++|++...++.|.
T Consensus 81 ~~~~~~----dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~------~~~~~~~~~v~~~~~G~~lv~~~~~~~v~ 149 (276)
T 3no2_A 81 TARILP----DGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGI------ERPHAQFRQINKNKKGNYLVPLFATSEVR 149 (276)
T ss_dssp EEEECT----TSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSC------SSGGGSCSCCEECTTSCEEEEETTTTEEE
T ss_pred ccEECC----CCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCC------CcccccccCceECCCCCEEEEecCCCEEE
Confidence 888888 4588888887 788888876 45444443332110 01112344567899999999999999999
Q ss_pred EEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCcccccccccccc
Q psy9598 644 VYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIK 723 (1915)
Q Consensus 644 IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 723 (1915)
+||.. ...+..+..+ ..+.++.+.++|..+++++.++.|..||..+++.+....... .. ......
T Consensus 150 ~~d~~----G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~--~~--------~~~l~~ 214 (276)
T 3no2_A 150 EIAPN----GQLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNAND--IE--------GVQLFF 214 (276)
T ss_dssp EECTT----SCEEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGG--SB--------SCCCSE
T ss_pred EECCC----CCEEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCC--CC--------Cccccc
Confidence 99973 3445555443 456678889999999999999999999999888654332100 00 001245
Q ss_pred EEEEEECCCCCEEEEEE
Q psy9598 724 VTMVAWDASDRWVITAI 740 (1915)
Q Consensus 724 V~~va~spdg~~L~t~s 740 (1915)
+..++..++|..+++..
T Consensus 215 ~~~~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 215 VAQLFPLQNGGLYICNW 231 (276)
T ss_dssp EEEEEECTTSCEEEEEE
T ss_pred cccceEcCCCCEEEEec
Confidence 77888889998887764
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.30 E-value=3.8e-09 Score=125.43 Aligned_cols=280 Identities=7% Similarity=-0.029 Sum_probs=193.3
Q ss_pred CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEE-EeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecc
Q psy9598 516 GCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPIS-VLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYK 594 (1915)
Q Consensus 516 gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~-~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~ 594 (1915)
.....+.+|+++++|.++++...++.|.+||.. +.... .+..+...+.+|++.+. +.++++...++.|..||..
T Consensus 17 ~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~----g~l~v~~~~~~~v~~~d~~ 91 (300)
T 2qc5_A 17 IPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSL----GDIWFTENGANKIGKLSKK 91 (300)
T ss_dssp STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTT----SCEEEEETTTTEEEEECTT
T ss_pred CCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCC----CCEEEEecCCCeEEEECCC
Confidence 345678999999999988887778999999988 55443 22234467889999873 4677776668899999877
Q ss_pred cCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCC
Q psy9598 595 LDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHS 674 (1915)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspd 674 (1915)
+.. ..... ......+.++++.++|.++++...++.|..|+.. .. .....+......+.++++.++
T Consensus 92 -g~~-~~~~~----------~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~--g~-~~~~~~~~~~~~~~~i~~d~~ 156 (300)
T 2qc5_A 92 -GGF-TEYPL----------PQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD--GT-IYEYDLPNKGSYPAFITLGSD 156 (300)
T ss_dssp -SCE-EEEEC----------SSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT--SC-EEEEECSSTTCCEEEEEECTT
T ss_pred -CCe-EEecC----------CCCCCCCccceECCCCCEEEEccCCCeEEEECCC--CC-EEEccCCCCCCCceeEEECCC
Confidence 432 11111 1122568899999999888877778899999873 11 112223334567899999999
Q ss_pred CCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCC
Q psy9598 675 HLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNG 754 (1915)
Q Consensus 675 g~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg 754 (1915)
|.++++...++.|.+|+. ++....... ......+..++++++|..+++... .+.|.+|+. ++
T Consensus 157 g~l~v~~~~~~~i~~~~~-~g~~~~~~~---------------~~~~~~~~~i~~d~~g~l~v~~~~-~~~i~~~~~-~g 218 (300)
T 2qc5_A 157 NALWFTENQNNSIGRITN-TGKLEEYPL---------------PTNAAAPVGITSGNDGALWFVEIM-GNKIGRITT-TG 218 (300)
T ss_dssp SSEEEEETTTTEEEEECT-TCCEEEEEC---------------SSTTCCEEEEEECTTSSEEEEETT-TTEEEEECT-TC
T ss_pred CCEEEEecCCCeEEEECC-CCcEEEeeC---------------CCCCCCcceEEECCCCCEEEEccC-CCEEEEEcC-CC
Confidence 997777766888999988 554332110 112345788999999976665544 678999998 56
Q ss_pred ceEEE-eeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEEe
Q psy9598 755 DLVQV-LKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTD 833 (1915)
Q Consensus 755 ~~i~~-l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~ 833 (1915)
..... +..+...+.+|++.+ ++.++++...++.|.+|+. ++.. ..+. + ......+.+++++++|.++++..
T Consensus 219 ~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~i~~~~~-~g~~---~~~~--~-~~~~~~~~~i~~~~~g~l~v~~~ 290 (300)
T 2qc5_A 219 EISEYDIPTPNARPHAITAGK-NSEIWFTEWGANQIGRITN-DNTI---QEYQ--L-QTENAEPHGITFGKDGSVWFALK 290 (300)
T ss_dssp CEEEEECSSTTCCEEEEEECS-TTCEEEEETTTTEEEEECT-TSCE---EEEE--C-CSTTCCCCCEEECTTSCEEEECS
T ss_pred cEEEEECCCCCCCceEEEECC-CCCEEEeccCCCeEEEECC-CCcE---EEEE--C-CccCCccceeEeCCCCCEEEEcc
Confidence 55443 334556789999999 7887777767899999998 4433 2222 1 12345688899999998666555
Q ss_pred CCCeEEEEeC
Q psy9598 834 SYGHLLVYGL 843 (1915)
Q Consensus 834 ~dG~I~Iwdl 843 (1915)
. .|..++.
T Consensus 291 -~-~i~~~~p 298 (300)
T 2qc5_A 291 -C-KIGKLNL 298 (300)
T ss_dssp -S-EEEEEEE
T ss_pred -C-ceEEeCC
Confidence 4 7777764
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.27 E-value=5.5e-10 Score=132.43 Aligned_cols=214 Identities=11% Similarity=-0.046 Sum_probs=158.8
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceEEEeecCC-CCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCc
Q psy9598 529 RNILLAAGTVDKTIRIWNLQTLAPISVLVGHQ-GIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEP 607 (1915)
Q Consensus 529 dg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~-~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~ 607 (1915)
.+++|++++.|+.|.+||..+|+.+..+..+. ..+.++.++|+ +++|+ +.++.|..||. +++.+..+...
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pd----G~ilv--s~~~~V~~~d~-~G~~~W~~~~~-- 74 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKA----GEILF--SYSKGAKMITR-DGRELWNIAAP-- 74 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTT----SCEEE--ECBSEEEEECT-TSCEEEEEECC--
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCC----CCEEE--eCCCCEEEECC-CCCEEEEEcCC--
Confidence 46789999999999999999999999998776 47889999984 47777 45788999998 67655444321
Q ss_pred cccccccCCCCCceEEEEECCCCcEEEEEeC-CCeEEEEEecCCCCCceeEEec------cCCCCeeEEEEcCCCCEEEE
Q psy9598 608 VMFNERIRPGNAHILCSSFSPGGLFLATGSG-DHHVRVYKMDGVDSPLGILEVE------EHSDKVDSIQWSHSHLRFVS 680 (1915)
Q Consensus 608 ~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~-Dg~I~IwDl~~~~~~~~i~~l~------~h~~~V~sl~fspdg~~L~s 680 (1915)
....+.++.+.++|++|++.+. ++.|..++..+ ..+..+. .+......+++.++|.+|++
T Consensus 75 ---------~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~G----k~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~ 141 (276)
T 3no2_A 75 ---------AGCEMQTARILPDGNALVAWCGHPSTILEVNMKG----EVLSKTEFETGIERPHAQFRQINKNKKGNYLVP 141 (276)
T ss_dssp ---------TTCEEEEEEECTTSCEEEEEESTTEEEEEECTTS----CEEEEEEECCSCSSGGGSCSCCEECTTSCEEEE
T ss_pred ---------CCccccccEECCCCCEEEEecCCCCEEEEEeCCC----CEEEEEeccCCCCcccccccCceECCCCCEEEE
Confidence 1245788999999999999887 77777776522 2222221 22234556778999999999
Q ss_pred EeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEe
Q psy9598 681 GSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVL 760 (1915)
Q Consensus 681 gs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l 760 (1915)
.+.++.|.+||.. ++.+..... ...+.++.+.++|..++++.. ++.|..||..+|+.+..+
T Consensus 142 ~~~~~~v~~~d~~-G~~~w~~~~-----------------~~~~~~~~~~~~g~~~v~~~~-~~~v~~~d~~tG~~~w~~ 202 (276)
T 3no2_A 142 LFATSEVREIAPN-GQLLNSVKL-----------------SGTPFSSAFLDNGDCLVACGD-AHCFVQLNLESNRIVRRV 202 (276)
T ss_dssp ETTTTEEEEECTT-SCEEEEEEC-----------------SSCCCEEEECTTSCEEEECBT-TSEEEEECTTTCCEEEEE
T ss_pred ecCCCEEEEECCC-CCEEEEEEC-----------------CCCccceeEcCCCCEEEEeCC-CCeEEEEeCcCCcEEEEe
Confidence 9999999999988 765442211 012345677899999988877 789999999999999998
Q ss_pred eCCC------CCeEEEEEccCCCCEEEEEe
Q psy9598 761 KGHT------NEVFVLESHPFDSRVLLSAG 784 (1915)
Q Consensus 761 ~gH~------~~V~sl~~sp~dg~~LaSgs 784 (1915)
..+. ..+..++..+ ++.++++..
T Consensus 203 ~~~~~~~~~l~~~~~~~~~~-~G~i~v~~~ 231 (276)
T 3no2_A 203 NANDIEGVQLFFVAQLFPLQ-NGGLYICNW 231 (276)
T ss_dssp EGGGSBSCCCSEEEEEEECT-TSCEEEEEE
T ss_pred cCCCCCCccccccccceEcC-CCCEEEEec
Confidence 7442 2367777777 777777663
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.26 E-value=6.2e-10 Score=136.44 Aligned_cols=299 Identities=11% Similarity=0.044 Sum_probs=191.6
Q ss_pred EEEeCCCCEEEEEeC-----CCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEe----------CCCeE
Q psy9598 524 IAIDNRNILLAAGTV-----DKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTS----------TDGCI 588 (1915)
Q Consensus 524 Lafspdg~~LaSgs~-----DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs----------~DgtI 588 (1915)
....|++..|++... ++.|.+.|..+++.+..+.....+ .++++|+ +.+|++++ .+++|
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P--~va~spD----G~~lyVan~~~~r~~~G~~~~~V 111 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADD----GSFIAHASTVFSRIARGERTDYV 111 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTT----SSCEEEEEEEEEETTEEEEEEEE
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC--cEEECCC----CCEEEEEcccccccccCCCCCEE
Confidence 345788988888765 679999999999999988765555 4999995 46666665 36789
Q ss_pred EEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeC--CCeEEEEEecCCCCCceeEEeccCCCCe
Q psy9598 589 GFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSG--DHHVRVYKMDGVDSPLGILEVEEHSDKV 666 (1915)
Q Consensus 589 ~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~--Dg~I~IwDl~~~~~~~~i~~l~~h~~~V 666 (1915)
.+||..+...+..+...... .. ........+.|+|+|++|+++.. ++.|.++|+.. ...+..+.-. + +
T Consensus 112 sviD~~t~~v~~~I~v~~g~----r~-~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t---~~vv~tI~v~-g-~ 181 (386)
T 3sjl_D 112 EVFDPVTLLPTADIELPDAP----RF-LVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEG---KAFKRMLDVP-D-C 181 (386)
T ss_dssp EEECTTTCCEEEEEEETTCC----CC-CBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTT---TEEEEEEECC-S-E
T ss_pred EEEECCCCeEEEEEECCCcc----cc-ccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCC---CcEEEEEECC-C-c
Confidence 99999988765554432100 00 00123456899999999888864 68999999943 3344444221 1 1
Q ss_pred eEEEEcCCCCEEEEEeCCCcEEEEEccC-CceEEeeecccccCCCCccccccccccccEEEEEEC-CCCCEEEEEEecCC
Q psy9598 667 DSIQWSHSHLRFVSGSRDGTALIWYYKC-SQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWD-ASDRWVITAINFNF 744 (1915)
Q Consensus 667 ~sl~fspdg~~L~sgs~DG~I~IWDl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~s-pdg~~L~t~s~~Dg 744 (1915)
...+......|++.+.||.+.+.++.+ +...... ..... ...........|. ++|++++++ . +|
T Consensus 182 -~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~---~~~~~--------~~~~~~~~~~~~~~~dG~~~~vs-~-~g 247 (386)
T 3sjl_D 182 -YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITH---TEVFH--------PEDEFLINHPAYSQKAGRLVWPT-Y-TG 247 (386)
T ss_dssp -EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEE---CCCCS--------CTTSCBCSCCEEETTTTEEEEEB-T-TS
T ss_pred -ceeecCCCceeEEECCCCCEEEEECCCCCeEEEee---cceec--------cccccccccceeEcCCCcEEEEe-C-CC
Confidence 222333456788889999999999876 4432111 00000 0000111123554 677665543 4 79
Q ss_pred eEEEEECCCCc--eEEEee---------C-CCCCeEEEEEccCCCCEEEEEec----------CceEEEEECCCCccccc
Q psy9598 745 QIKIWDAFNGD--LVQVLK---------G-HTNEVFVLESHPFDSRVLLSAGH----------DGLIIIWDILSSKQRGY 802 (1915)
Q Consensus 745 ~I~vwD~~tg~--~i~~l~---------g-H~~~V~sl~~sp~dg~~LaSgs~----------DG~I~IWdl~s~~~~~~ 802 (1915)
.|++.|+.++. .+..+. + ..+.+..+++++ ++..|+.+.. .+.|.+.|+.+++. +
T Consensus 248 ~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~-~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv--~ 324 (386)
T 3sjl_D 248 KIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHR-ALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGER--L 324 (386)
T ss_dssp EEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEET-TTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCE--E
T ss_pred EEEEEECCCCcceeecceeccccccccccccCCCcceeeECC-CCCeEEEEeccccccccCCCCCEEEEEECCCCeE--E
Confidence 99999997654 222221 0 112233467788 6666666542 25799999999888 6
Q ss_pred eeeeeeecCCCCcceEEEEEcCCCC-EEEEE-eCCCeEEEEeCCCCcccccCCC-----ceeecCC
Q psy9598 803 KWFHNIVEGQGEGALFDGKWSPDGT-TCALT-DSYGHLLVYGLGGFKRPQNIPR-----ELFFHTD 861 (1915)
Q Consensus 803 ~~~~~~~~~~~~~~V~~vafSpdg~-~Lasg-~~dG~I~Iwdl~s~~~~~~l~~-----~~~F~~d 861 (1915)
..+. -...+++|+|++|++ +|+++ ..+|.|.|+|..+++.+.+++. ++.+++|
T Consensus 325 ~~i~------vg~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~~~p~~l~~s~d 384 (386)
T 3sjl_D 325 AKFE------MGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTAD 384 (386)
T ss_dssp EEEE------EEEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSSCCEEEECC
T ss_pred EEEE------CCCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCCCCCceeEECCc
Confidence 6655 113678999999997 66665 4589999999999988877654 4555544
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.25 E-value=1.2e-09 Score=131.18 Aligned_cols=245 Identities=11% Similarity=0.017 Sum_probs=166.1
Q ss_pred cCCCCcEEEEEEcCCCCEEEE-------EECCCcEEEEECCCCcEEEEEe----CCCCCEEEEEEeCC-CCEEEEEeCCC
Q psy9598 473 LGHLSAVFCVLFDKLGEVIVT-------GADDLLIKLWRARDGKLLATLR----GCSGEISDIAIDNR-NILLAAGTVDK 540 (1915)
Q Consensus 473 ~gH~~~V~~vafspdg~~LaT-------Gs~Dg~I~IWd~~tg~~~~~l~----gH~~~I~~Lafspd-g~~LaSgs~Dg 540 (1915)
.+......+++|+++|.++++ ++.++.|.+|+..+++...... ++...+.+++++++ |.++++.. .+
T Consensus 14 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~-~~ 92 (314)
T 1pjx_A 14 TEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-RL 92 (314)
T ss_dssp ECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET-TT
T ss_pred hccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC-CC
Confidence 344556789999999998888 6778999999998887654322 25567999999999 76555544 44
Q ss_pred cEEEEECCCCceEEE-eec----CCCCeEEEEeccCccCCCcEEEEEeCC---------------CeEEEEecccCcccc
Q psy9598 541 TIRIWNLQTLAPISV-LVG----HQGIITGVNFCPLEVNGFNYLASTSTD---------------GCIGFWKYKLDIDIS 600 (1915)
Q Consensus 541 tIrVWDl~tg~~~~~-l~~----h~~~V~sl~fsp~~~~d~~~L~sgs~D---------------gtI~iWDl~~~~~~~ 600 (1915)
.|.+||.. +..... ... +...+.++++.+. +.++++...+ +.|..|+.. +.. .
T Consensus 93 ~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~----g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-~ 165 (314)
T 1pjx_A 93 GLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYE----GNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQM-I 165 (314)
T ss_dssp EEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTT----SCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCE-E
T ss_pred CEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCC----CCEEEEecCcccccccccccccCCCCeEEEECCC-CCE-E
Confidence 79999998 765433 221 1235889999884 4677766655 566666654 321 1
Q ss_pred ceeccCccccccccCCCCCceEEEEEC----CCCcEEEEE-eCCCeEEEEEecCCCCC---ceeEEeccCC-CCeeEEEE
Q psy9598 601 KTVFHEPVMFNERIRPGNAHILCSSFS----PGGLFLATG-SGDHHVRVYKMDGVDSP---LGILEVEEHS-DKVDSIQW 671 (1915)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~V~~l~fs----pdg~~Lasg-s~Dg~I~IwDl~~~~~~---~~i~~l~~h~-~~V~sl~f 671 (1915)
.. . .+......++|+ ++|..|+++ ..++.|.+|++...... ..+..+..+. ..+..|++
T Consensus 166 ~~-~-----------~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~ 233 (314)
T 1pjx_A 166 QV-D-----------TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDF 233 (314)
T ss_dssp EE-E-----------EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEE
T ss_pred Ee-c-----------cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEE
Confidence 11 0 011346788999 999765554 56789999998421111 1222334444 56889999
Q ss_pred cCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEEC
Q psy9598 672 SHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDA 751 (1915)
Q Consensus 672 spdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~ 751 (1915)
+++|.++++...++.|.+||..+++..... ..+...+.+++|+++|..|++++..++.|.+|++
T Consensus 234 d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~----------------~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~ 297 (314)
T 1pjx_A 234 DEDNNLLVANWGSSHIEVFGPDGGQPKMRI----------------RCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEW 297 (314)
T ss_dssp BTTCCEEEEEETTTEEEEECTTCBSCSEEE----------------ECSSSCEEEEEECTTSSEEEEEETTTTEEEEEEC
T ss_pred CCCCCEEEEEcCCCEEEEEcCCCCcEeEEE----------------eCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeC
Confidence 999998888888999999998755422111 0123568899999999977777654679999998
Q ss_pred CC
Q psy9598 752 FN 753 (1915)
Q Consensus 752 ~t 753 (1915)
..
T Consensus 298 ~~ 299 (314)
T 1pjx_A 298 QR 299 (314)
T ss_dssp SS
T ss_pred CC
Confidence 64
|
| >3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A | Back alignment and structure |
|---|
Probab=99.24 E-value=4.4e-12 Score=137.10 Aligned_cols=98 Identities=15% Similarity=0.292 Sum_probs=87.0
Q ss_pred hhhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCccccccCccchhhHHhhhcCCCCCCHHHHHHHHHHHHHHhhhhcCC
Q psy9598 1531 FNWKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQN 1610 (1915)
Q Consensus 1531 ~~~~~~~~~ll~~l~~~~~s~~F~~pv~~~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~Dv~lif~Na~~yN~~ 1610 (1915)
..+...+..||..|..++.++||+.. . ++.||||.||++||+.|.|.|+.+|..||.|||.||.+||.+
T Consensus 74 ~el~~~l~~vl~~L~~~~~s~~~~~y---------~--~k~PmDL~~i~kKl~~~~Y~s~~eF~~Dv~lIf~n~~~~~~~ 142 (183)
T 3lqh_A 74 KELQISLKQVLTALLNSRTTSHLLRY---------R--QQQPLDLEGVKRKMDQGNYTSVLEFSDDIVKIIQAAINSDGG 142 (183)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHTC---------C--C--CCSHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHhccccHhhhhh---------h--hcCCccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhccCC
Confidence 34556689999999999999999873 2 499999999999999999999999999999999999999997
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy9598 1611 KRSKIYIMTTRLSEFAEEHLRRLTVRWNSH 1640 (1915)
Q Consensus 1611 ~~s~i~~~a~~l~~~f~~~~~~~~~~~~~~ 1640 (1915)
. +.+...+..|+.+|.++++++...+...
T Consensus 143 ~-~e~~~ag~~l~~~f~~~l~~vfpwf~~~ 171 (183)
T 3lqh_A 143 Q-PEIKKANSMVKSFFIRQMERVFPWFSVK 171 (183)
T ss_dssp C-HHHHHHHHHHHHHHHHHHHHHCTTSCGG
T ss_pred C-hhhhhhhhHHHHHHHHHHHHHCCCCCcc
Confidence 7 9999999999999999999999887644
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.23 E-value=3.5e-10 Score=153.57 Aligned_cols=245 Identities=11% Similarity=-0.044 Sum_probs=159.6
Q ss_pred CCCCeEEEEeccCccCCCcEEEEEeCC-----CeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEE
Q psy9598 559 HQGIITGVNFCPLEVNGFNYLASTSTD-----GCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFL 633 (1915)
Q Consensus 559 h~~~V~sl~fsp~~~~d~~~L~sgs~D-----gtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~L 633 (1915)
|...+.+++|+|+ +++|+.++.+ ..|++||+.++..+... .. ...+..++|+|| +.|
T Consensus 161 ~~~~~~~~~~SPD----G~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~-~~------------~~~~~~~~wspD-~~l 222 (741)
T 1yr2_A 161 GATALDAWAASDD----GRLLAYSVQDGGSDWRTVKFVGVADGKPLADE-LK------------WVKFSGLAWLGN-DAL 222 (741)
T ss_dssp --EEEEEEEECTT----SSEEEEEEEETTCSEEEEEEEETTTCCEEEEE-EE------------EEESCCCEESTT-SEE
T ss_pred CCEEEEeEEECCC----CCEEEEEEcCCCCceEEEEEEECCCCCCCCcc-CC------------CceeccEEEECC-CEE
Confidence 3346889999994 4777776544 46999999988643211 00 012346899999 888
Q ss_pred EEEeCCCe--------------EEEEEecCCCC-CceeEEeccCCCCeeEEEEcCCCCEEEEEeCCC-----cEEEEEcc
Q psy9598 634 ATGSGDHH--------------VRVYKMDGVDS-PLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDG-----TALIWYYK 693 (1915)
Q Consensus 634 asgs~Dg~--------------I~IwDl~~~~~-~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG-----~I~IWDl~ 693 (1915)
+.++.++. |++|++.+... ...+.....+...+.++.|+|+|++|+.++.++ .|.+||+.
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~ 302 (741)
T 1yr2_A 223 LYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVT 302 (741)
T ss_dssp EEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEE
T ss_pred EEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECC
Confidence 88876654 88888843221 122333333444688999999999888877554 79999988
Q ss_pred CC--c-eEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEec---CCeEEEEECCCC--ceEEEeeCCCC
Q psy9598 694 CS--Q-WRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINF---NFQIKIWDAFNG--DLVQVLKGHTN 765 (1915)
Q Consensus 694 ~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~---Dg~I~vwD~~tg--~~i~~l~gH~~ 765 (1915)
++ . +..+.. +...+... ++++|..|+..+.. ++.|.+||+.++ .....+..+..
T Consensus 303 ~~~~~~~~~l~~-----------------~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~ 364 (741)
T 1yr2_A 303 NGKIGPVTALIP-----------------DLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKD 364 (741)
T ss_dssp TTEECCCEEEEC-----------------SSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSS
T ss_pred CCCCcccEEecC-----------------CCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCC
Confidence 76 3 322210 11122233 34889988887752 346999999875 34444555555
Q ss_pred CeEEEEEccCCCCEEEEEecCceEEEEECC-CCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEEe----CCCeEEE
Q psy9598 766 EVFVLESHPFDSRVLLSAGHDGLIIIWDIL-SSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTD----SYGHLLV 840 (1915)
Q Consensus 766 ~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~-s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~----~dG~I~I 840 (1915)
.+..++|+ ++.+++++..||..+||.+. ++.. ...+ ...+.+.|..++++|++..|+.+. ..+.|++
T Consensus 365 ~l~~~~~~--~~~lv~~~~~dg~~~l~~~~~~g~~--~~~l----~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~ 436 (741)
T 1yr2_A 365 NLESVGIA--GNRLFASYIHDAKSQVLAFDLDGKP--AGAV----SLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLA 436 (741)
T ss_dssp EEEEEEEE--BTEEEEEEEETTEEEEEEEETTSCE--EEEC----BCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEE
T ss_pred eEEEEEEE--CCEEEEEEEECCEEEEEEEeCCCCc--eeec----cCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEE
Confidence 56677776 46788889999988887664 3333 2222 222356788999999998666443 3378999
Q ss_pred EeCCCCc
Q psy9598 841 YGLGGFK 847 (1915)
Q Consensus 841 wdl~s~~ 847 (1915)
|++.+++
T Consensus 437 ~d~~tg~ 443 (741)
T 1yr2_A 437 LDPATAK 443 (741)
T ss_dssp EETTTTE
T ss_pred EECCCCc
Confidence 9998875
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.23 E-value=1.8e-09 Score=129.63 Aligned_cols=251 Identities=8% Similarity=0.050 Sum_probs=167.3
Q ss_pred CCCCEEEEEEeCCCCEEEE-------EeCCCcEEEEECCCCceEEEee----cCCCCeEEEEeccCccCCCcEEEEEeCC
Q psy9598 517 CSGEISDIAIDNRNILLAA-------GTVDKTIRIWNLQTLAPISVLV----GHQGIITGVNFCPLEVNGFNYLASTSTD 585 (1915)
Q Consensus 517 H~~~I~~Lafspdg~~LaS-------gs~DgtIrVWDl~tg~~~~~l~----~h~~~V~sl~fsp~~~~d~~~L~sgs~D 585 (1915)
.-....+++|+++|.++++ ++.++.|.+||..+++...... ++...+.++++.++. +.+++++. .
T Consensus 16 ~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~---g~l~v~~~-~ 91 (314)
T 1pjx_A 16 DIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDA---NQLFVADM-R 91 (314)
T ss_dssp CCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSS---SEEEEEET-T
T ss_pred cCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCC---CcEEEEEC-C
Confidence 3446789999999988888 5778999999998887643322 255678999998841 35444444 4
Q ss_pred CeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCC---------------CeEEEEEecCC
Q psy9598 586 GCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGD---------------HHVRVYKMDGV 650 (1915)
Q Consensus 586 gtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~D---------------g~I~IwDl~~~ 650 (1915)
+.|.+||.. +.... ...... .......+.+++++++|.++++...+ +.|..|+..
T Consensus 92 ~~l~~~d~~-g~~~~-~~~~~~------~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 161 (314)
T 1pjx_A 92 LGLLVVQTD-GTFEE-IAKKDS------EGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-- 161 (314)
T ss_dssp TEEEEEETT-SCEEE-CCSBCT------TSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT--
T ss_pred CCEEEEeCC-CCEEE-EEeccC------CCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC--
Confidence 478899987 53211 101000 00112457899999999887776655 456566542
Q ss_pred CCCceeEEeccCCCCeeEEEEc----CCCCEEEEE-eCCCcEEEEEcc-CCceEEeeecccccCCCCcccccccccc-cc
Q psy9598 651 DSPLGILEVEEHSDKVDSIQWS----HSHLRFVSG-SRDGTALIWYYK-CSQWRFIRLDMNTCLPHTKETSDETNKK-IK 723 (1915)
Q Consensus 651 ~~~~~i~~l~~h~~~V~sl~fs----pdg~~L~sg-s~DG~I~IWDl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 723 (1915)
.. +..+..+......++|+ +++..|+++ +.++.|.+|++. .+........ .....+. ..
T Consensus 162 g~---~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~-----------~~~~~~~~~~ 227 (314)
T 1pjx_A 162 GQ---MIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVW-----------GHIPGTHEGG 227 (314)
T ss_dssp SC---EEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEE-----------EECCCCSSCE
T ss_pred CC---EEEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEE-----------EECCCCCCCC
Confidence 21 22222344557889999 999765544 567899999986 3432111000 0001112 45
Q ss_pred EEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCC-EEEEEecCceEEEEECCCC
Q psy9598 724 VTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSR-VLLSAGHDGLIIIWDILSS 797 (1915)
Q Consensus 724 V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~-~LaSgs~DG~I~IWdl~s~ 797 (1915)
+..++++++|.++++... ++.|.+||..+++.+..+..+...+.+++|++ ++. ++++...++.|..|++...
T Consensus 228 p~~i~~d~~G~l~v~~~~-~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~-dg~~l~v~~~~~~~l~~~~~~~~ 300 (314)
T 1pjx_A 228 ADGMDFDEDNNLLVANWG-SSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKP-QTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp EEEEEEBTTCCEEEEEET-TTEEEEECTTCBSCSEEEECSSSCEEEEEECT-TSSEEEEEETTTTEEEEEECSSC
T ss_pred CCceEECCCCCEEEEEcC-CCEEEEEcCCCCcEeEEEeCCCCCceeEEECC-CCCEEEEEeCCCCeEEEEeCCCC
Confidence 678999999988777666 88999999988888888887778899999998 888 5555566789999998753
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.21 E-value=6.9e-10 Score=136.61 Aligned_cols=174 Identities=6% Similarity=-0.033 Sum_probs=135.7
Q ss_pred cEEEEEEcCCCCEEEEEECCCcEEEEECCCCc-----------EEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEE
Q psy9598 478 AVFCVLFDKLGEVIVTGADDLLIKLWRARDGK-----------LLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWN 546 (1915)
Q Consensus 478 ~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~-----------~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWD 546 (1915)
.++.+++++.+.+||+|+.+ .++||++.+.. ..... .+.+ |++|+| ++.+|+++ .++.|++||
T Consensus 39 ~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HGDQVLVS-TRNALYSLD 112 (388)
T ss_dssp CCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred cccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence 68999999999999999998 55669865433 11222 3566 999999 89999999 789999999
Q ss_pred CCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEE
Q psy9598 547 LQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSF 626 (1915)
Q Consensus 547 l~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~f 626 (1915)
+.+......+..|...|.++.+.+ ..+++++.||+|.+||+..+.... +...|.|++|
T Consensus 113 v~sl~~~~~~~~~~~~v~~i~~~~------p~~av~~~dG~L~v~dl~~~~~~~----------------~~~~Vs~v~W 170 (388)
T 1xip_A 113 LEELSEFRTVTSFEKPVFQLKNVN------NTLVILNSVNDLSALDLRTKSTKQ----------------LAQNVTSFDV 170 (388)
T ss_dssp SSSTTCEEEEEECSSCEEEEEECS------SEEEEEETTSEEEEEETTTCCEEE----------------EEESEEEEEE
T ss_pred chhhhccCccceeecceeeEEecC------CCEEEEECCCCEEEEEccCCcccc----------------ccCCceEEEE
Confidence 988777777778888899888776 238889999999999998765321 1257999999
Q ss_pred CCCCcEEEEEeCCCeEEEEEecCCCCCceeEEe------c---cCCCCeeEEEEcCCCCEEEEEe
Q psy9598 627 SPGGLFLATGSGDHHVRVYKMDGVDSPLGILEV------E---EHSDKVDSIQWSHSHLRFVSGS 682 (1915)
Q Consensus 627 spdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l------~---~h~~~V~sl~fspdg~~L~sgs 682 (1915)
||+| ++.|..||.|++|+..+... .....+ . +|...|.+|+|.+++.+|++-+
T Consensus 171 SpkG--~~vg~~dg~i~~~~~~~~~~-~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 171 TNSQ--LAVLLKDRSFQSFAWRNGEM-EKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp CSSE--EEEEETTSCEEEEEEETTEE-EEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred cCCc--eEEEEcCCcEEEEcCCCccc-cccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 9999 78899999999998853221 002223 2 4788999999999999888744
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.21 E-value=2e-09 Score=134.27 Aligned_cols=289 Identities=9% Similarity=0.043 Sum_probs=187.1
Q ss_pred CCCCEEEEEECC-----CcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEe----------CCCcEEEEECCCC
Q psy9598 486 KLGEVIVTGADD-----LLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGT----------VDKTIRIWNLQTL 550 (1915)
Q Consensus 486 pdg~~LaTGs~D-----g~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs----------~DgtIrVWDl~tg 550 (1915)
+++.++++.... +.|.++|+.+++.+.++.....+ .|+++|||++|+++. .++.|.++|+.++
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~ 159 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF 159 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence 456665555442 69999999999999999755555 899999999888775 3678999999999
Q ss_pred ceEEEeecC-------CCCeEEEEeccCccCCCcEEEEEeC--CCeEEEEecccCccccceeccCccccccccCCCCCce
Q psy9598 551 APISVLVGH-------QGIITGVNFCPLEVNGFNYLASTST--DGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHI 621 (1915)
Q Consensus 551 ~~~~~l~~h-------~~~V~sl~fsp~~~~d~~~L~sgs~--DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V 621 (1915)
+.+..+.-. ......+.|+|+ +++|+++.. +++|.+.|+.+.+.+..+....
T Consensus 160 ~vv~~I~v~g~~r~~~g~~P~~~~~spD----Gk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g--------------- 220 (426)
T 3c75_H 160 LPIADIELPDAPRFLVGTYQWMNALTPD----NKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD--------------- 220 (426)
T ss_dssp CEEEEEEETTCCCCCBSCCGGGSEECTT----SSEEEEEECSSSCEEEEEETTTTEEEEEEECCS---------------
T ss_pred cEEEEEECCCccccccCCCcceEEEcCC----CCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC---------------
Confidence 998877521 234567899984 478887764 6899999999987655443320
Q ss_pred EEEEECCCC-cEEEEEeCCCeEEEEEecCCCCCcee--EEeccCCCCe-eEEEEcCCCCEEEEEeCCCcEEEEEccCCce
Q psy9598 622 LCSSFSPGG-LFLATGSGDHHVRVYKMDGVDSPLGI--LEVEEHSDKV-DSIQWSHSHLRFVSGSRDGTALIWYYKCSQW 697 (1915)
Q Consensus 622 ~~l~fspdg-~~Lasgs~Dg~I~IwDl~~~~~~~~i--~~l~~h~~~V-~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~ 697 (1915)
|....|+| ..+++.+.||.+.+.++ ........ ..+.....++ ..+.|.+++..++..+..|.|.+.|+.....
T Consensus 221 -~~~~~p~g~~~~v~~~~dG~~~~V~~-~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~ 298 (426)
T 3c75_H 221 -CYHIFPASPTVFYMNCRDGSLARVDF-ADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGA 298 (426)
T ss_dssp -EEEEEEEETTEEEEEETTSSEEEEEC-CTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCE
T ss_pred -ceeeccCCCcEEEEEcCCCCEEEEEC-CCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCce
Confidence 11122222 33444455555555555 11111100 0011111111 2356789988888778889999999876543
Q ss_pred EEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEec---------CCeEEEEECCCCceEEEeeCCCCCeE
Q psy9598 698 RFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINF---------NFQIKIWDAFNGDLVQVLKGHTNEVF 768 (1915)
Q Consensus 698 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~---------Dg~I~vwD~~tg~~i~~l~gH~~~V~ 768 (1915)
..... ........ ............+++++++..++++... ++.|.++|+.+++.+..+.... ..+
T Consensus 299 ~v~~~--~~~~~~~~--i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~-~P~ 373 (426)
T 3c75_H 299 TFRAP--IEALTEAE--RADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGH-EID 373 (426)
T ss_dssp EECCC--EESSCTTT--GGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE-EEC
T ss_pred EEeee--eeeccccc--cccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCC-CcC
Confidence 22110 00000000 0000011122236899999988887531 3579999999999999886433 478
Q ss_pred EEEEccCCCC-EEEEEe-cCceEEEEECCCCccccceee
Q psy9598 769 VLESHPFDSR-VLLSAG-HDGLIIIWDILSSKQRGYKWF 805 (1915)
Q Consensus 769 sl~~sp~dg~-~LaSgs-~DG~I~IWdl~s~~~~~~~~~ 805 (1915)
+|+|+| +++ +|+++. .++.|.|+|+.+++. +..+
T Consensus 374 gia~sp-Dg~~~lyv~n~~s~~VsVID~~t~kv--v~tI 409 (426)
T 3c75_H 374 SINVSQ-DAEPLLYALSAGTQTLHIYDAATGEE--LRSV 409 (426)
T ss_dssp EEEECC-SSSCEEEEEETTTTEEEEEETTTCCE--EEEE
T ss_pred eEEEcc-CCCEEEEEEcCCCCeEEEEECCCCCE--EEEe
Confidence 999999 887 888877 599999999999887 5544
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.20 E-value=1.9e-08 Score=124.64 Aligned_cols=260 Identities=7% Similarity=-0.116 Sum_probs=171.3
Q ss_pred ceeeeEEecCCCCcEEEEEEcCCCCEEEEEE----------CCCcEEEEECCCCcEEEEEeCC-------CCCEEEEEEe
Q psy9598 465 NLRQHYVNLGHLSAVFCVLFDKLGEVIVTGA----------DDLLIKLWRARDGKLLATLRGC-------SGEISDIAID 527 (1915)
Q Consensus 465 ~~~~~~~l~gH~~~V~~vafspdg~~LaTGs----------~Dg~I~IWd~~tg~~~~~l~gH-------~~~I~~Lafs 527 (1915)
..++..++.....+ .++|+|||++|+++. .++.|.+||+.+++.+.++... ......++|+
T Consensus 56 t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~s 133 (373)
T 2mad_H 56 SGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANT 133 (373)
T ss_pred CCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEEC
Confidence 33444455433344 899999999999886 3678999999999888877532 1234589999
Q ss_pred CCCCEEEEEeC--CCcEEEEECCCCceEEE-eecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceec
Q psy9598 528 NRNILLAAGTV--DKTIRIWNLQTLAPISV-LVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVF 604 (1915)
Q Consensus 528 pdg~~LaSgs~--DgtIrVWDl~tg~~~~~-l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~ 604 (1915)
|||++|++++. ++.|.++| .+++.+.. +.. .+ ++.+.|. +...+++.+.||.+.+||. ++........
T Consensus 134 pDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~-~~---~~~~~~~---~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~ 204 (373)
T 2mad_H 134 PNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSS-PT---CYHIHPG---APSTFYLLCAQGGLAKTDH-AGGAAGAGLV 204 (373)
T ss_pred CCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCC-Cc---eEEEEeC---CCceEEEEcCCCCEEEEEC-CCcEEEEEec
Confidence 99999998874 57899999 99998877 542 22 2445553 2356778889999999999 6654321110
Q ss_pred cCccccccccCCCCCc-eEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEecc----------CCCCeeEEEEcC
Q psy9598 605 HEPVMFNERIRPGNAH-ILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEE----------HSDKVDSIQWSH 673 (1915)
Q Consensus 605 ~~~~~~~~~~~~~~~~-V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~----------h~~~V~sl~fsp 673 (1915)
. +. + ..... .....+.+++..++..+..+.|.+.|+.+.. ...+..+.- .......+++++
T Consensus 205 ~-~~-----~-~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~-~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~ 276 (373)
T 2mad_H 205 G-AM-----L-TAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAG-ATNKAPIDALSGGRKADTWRPGGWQQVAYLK 276 (373)
T ss_pred c-cc-----c-cCCcceeecceeEecCCEEEEEcCCceEEEEeccCCc-ceEeeeeeecCCcccccceecCceEeEEECC
Confidence 0 00 0 11111 1234566665554444567889999984321 111111110 122344578999
Q ss_pred CCCEEEEEeC----------CCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCC-EEEEEEec
Q psy9598 674 SHLRFVSGSR----------DGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDR-WVITAINF 742 (1915)
Q Consensus 674 dg~~L~sgs~----------DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~-~L~t~s~~ 742 (1915)
++.+|+++.. .+.|.++|+.+.+.+.... ......+++|++||+ .++++...
T Consensus 277 d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~-----------------~g~~p~~i~~s~Dg~~~l~v~~~~ 339 (373)
T 2mad_H 277 SSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-----------------LGHDVDAISVAQDGGPDLYALSAG 339 (373)
T ss_pred CCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEE-----------------CCCCcCeEEECCCCCeEEEEEcCC
Confidence 9988877653 3579999998877543221 122467899999999 66666634
Q ss_pred CCeEEEEECCCCceEEEe
Q psy9598 743 NFQIKIWDAFNGDLVQVL 760 (1915)
Q Consensus 743 Dg~I~vwD~~tg~~i~~l 760 (1915)
++.|.|||+.+++.+..+
T Consensus 340 ~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 340 TEVLHIYDAGAGDQDQST 357 (373)
T ss_pred CCeEEEEECCCCCEEeee
Confidence 899999999999998884
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.19 E-value=4e-09 Score=132.40 Aligned_cols=254 Identities=9% Similarity=0.004 Sum_probs=167.9
Q ss_pred CCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCC--cEEEEECCCCceE
Q psy9598 476 LSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDK--TIRIWNLQTLAPI 553 (1915)
Q Consensus 476 ~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~Dg--tIrVWDl~tg~~~ 553 (1915)
.....+|+|+++|.++++...++.|++||+.++.+...+..... .. ++|++++.+|+++..++ .|.+|+..++...
T Consensus 130 ~~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~-~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~ 207 (409)
T 3hrp_A 130 FKYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKG-GK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAP 207 (409)
T ss_dssp CCCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCB-CB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCE
T ss_pred cCCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCC-Cc-eeEecCCCcEEEEecCCCceEEEEEcCCCcee
Confidence 45789999999999888888889999999988877766654333 33 99999999999888766 7899998766554
Q ss_pred EEe----ecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCc--eEEEEEC
Q psy9598 554 SVL----VGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAH--ILCSSFS 627 (1915)
Q Consensus 554 ~~l----~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~--V~~l~fs 627 (1915)
..+ ..+...+.+++++|.. ..|+.+..++.|..||..++......... ..++... ...++|+
T Consensus 208 ~~~g~~~~~~~~~p~~iav~p~~----g~lyv~d~~~~I~~~d~~~~~~~~~~~~~--------~~g~~~~~P~~~ia~~ 275 (409)
T 3hrp_A 208 TRIGQLGSTFSGKIGAVALDETE----EWLYFVDSNKNFGRFNVKTQEVTLIKQLE--------LSGSLGTNPGPYLIYY 275 (409)
T ss_dssp EEEEECCTTSCSCCCBCEECTTS----SEEEEECTTCEEEEEETTTCCEEEEEECC--------CCSCCCCSSCCEEEEE
T ss_pred EEeeeccchhcCCcEEEEEeCCC----CeEEEEECCCcEEEEECCCCCEEEEeccc--------ccCCCCCCccccEEEe
Confidence 444 2245677899999832 45555777899999998866421110000 0001111 1289999
Q ss_pred C-CCcEEEEEeCCCeEEEEEecCCCCCceeEEeccC---------------CCCeeEEEEcCCCCEEEEEe-CCCcEEEE
Q psy9598 628 P-GGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEH---------------SDKVDSIQWSHSHLRFVSGS-RDGTALIW 690 (1915)
Q Consensus 628 p-dg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h---------------~~~V~sl~fspdg~~L~sgs-~DG~I~IW 690 (1915)
| ++.++++...++.|+.|+.++. +..+.++ -.....|+|+++|.++++-+ .++.|+.|
T Consensus 276 p~~g~lyv~d~~~~~I~~~~~~g~-----~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~ 350 (409)
T 3hrp_A 276 FVDSNFYMSDQNLSSVYKITPDGE-----CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKL 350 (409)
T ss_dssp TTTTEEEEEETTTTEEEEECTTCC-----EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEE
T ss_pred CCCCEEEEEeCCCCEEEEEecCCC-----EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEE
Confidence 9 4667777777899999987432 2222222 24578999999999888877 88999999
Q ss_pred EccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEEC
Q psy9598 691 YYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDA 751 (1915)
Q Consensus 691 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~ 751 (1915)
++.++....+.-.... ............-.....|+++++|.++++-.. ++.|+.+++
T Consensus 351 ~~~~G~v~~~~g~~~~--~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~-n~~Ir~i~~ 408 (409)
T 3hrp_A 351 DILDGYVSTVAGQVDV--ASQIDGTPLEATFNYPYDICYDGEGGYWIAEAW-GKAIRKYAV 408 (409)
T ss_dssp ETTTTEEEEEEECTTC--BSCCCBSTTTCCBSSEEEEEECSSSEEEEEEST-TCEEEEEEE
T ss_pred ECCCCEEEEEeCCCCC--CCcCCCChhceEeCCceEEEEcCCCCEEEEECC-CCeEEEEEe
Confidence 9877764332211000 000000001112346788999999655554444 788887764
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=99.17 E-value=4.6e-08 Score=121.12 Aligned_cols=301 Identities=10% Similarity=-0.024 Sum_probs=188.9
Q ss_pred CCEEEEEECCCcEEEEECCCCcEEEEEeCCC---------CCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeec
Q psy9598 488 GEVIVTGADDLLIKLWRARDGKLLATLRGCS---------GEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVG 558 (1915)
Q Consensus 488 g~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~---------~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~ 558 (1915)
+..|++++.++.|..||..+|+.+..+.... ..+.+.. ..++..|+.++.++.|..+|..+|+.+..+..
T Consensus 53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~ 131 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGV-TVSGGHVYIGSEKAQVYALNTSDGTVAWQTKV 131 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEE-EEETTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCc-eEeCCEEEEEcCCCEEEEEECCCCCEEEEEeC
Confidence 6788888889999999999999988776432 2232222 22355788888899999999999998877765
Q ss_pred CCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeC
Q psy9598 559 HQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSG 638 (1915)
Q Consensus 559 h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~ 638 (1915)
........... +..+++++.++.|..+|..++..+.......+... ....... ... +..+++++.
T Consensus 132 ~~~~~~~p~~~------~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~---~~~~~~~----~~~--~~~v~~g~~ 196 (376)
T 3q7m_A 132 AGEALSRPVVS------DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLS---LRGESAP----TTA--FGAAVVGGD 196 (376)
T ss_dssp SSCCCSCCEEE------TTEEEEECTTSEEEEEETTTCCEEEEEECCC--------CCCCCC----EEE--TTEEEECCT
T ss_pred CCceEcCCEEE------CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCcee---ecCCCCc----EEE--CCEEEEEcC
Confidence 43322222222 25788889999999999998876655443311100 0001111 111 346778888
Q ss_pred CCeEEEEEecCCCCCceeEEeccCC--CC--------e-eEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeeccccc
Q psy9598 639 DHHVRVYKMDGVDSPLGILEVEEHS--DK--------V-DSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTC 707 (1915)
Q Consensus 639 Dg~I~IwDl~~~~~~~~i~~l~~h~--~~--------V-~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~ 707 (1915)
+|.|..+|..+. ..+....... +. + ....+ .+..+++++.+|.|..+|..+++...... .
T Consensus 197 ~g~l~~~d~~tG---~~~w~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~v~~~~~~g~l~~~d~~tG~~~w~~~-~--- 267 (376)
T 3q7m_A 197 NGRVSAVLMEQG---QMIWQQRISQATGSTEIDRLSDVDTTPVV--VNGVVFALAYNGNLTALDLRSGQIMWKRE-L--- 267 (376)
T ss_dssp TTEEEEEETTTC---CEEEEEECCC-----------CCCCCCEE--ETTEEEEECTTSCEEEEETTTCCEEEEEC-C---
T ss_pred CCEEEEEECCCC---cEEEEEecccCCCCcccccccccCCCcEE--ECCEEEEEecCcEEEEEECCCCcEEeecc-C---
Confidence 999999998432 2222222110 00 1 01111 24578888889999999999887543211 0
Q ss_pred CCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeC-CCCCeEEEEEccCCCCEEEEEecC
Q psy9598 708 LPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKG-HTNEVFVLESHPFDSRVLLSAGHD 786 (1915)
Q Consensus 708 ~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~g-H~~~V~sl~~sp~dg~~LaSgs~D 786 (1915)
.....+.. ++..|++++. ++.|..+|..+|+.+..... ....+....+. +..|+.++.+
T Consensus 268 --------------~~~~~~~~--~~~~l~~~~~-~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~---~~~l~v~~~~ 327 (376)
T 3q7m_A 268 --------------GSVNDFIV--DGNRIYLVDQ-NDRVMALTIDGGVTLWTQSDLLHRLLTSPVLY---NGNLVVGDSE 327 (376)
T ss_dssp --------------CCEEEEEE--ETTEEEEEET-TCCEEEEETTTCCEEEEECTTTTSCCCCCEEE---TTEEEEECTT
T ss_pred --------------CCCCCceE--ECCEEEEEcC-CCeEEEEECCCCcEEEeecccCCCcccCCEEE---CCEEEEEeCC
Confidence 11222333 3667777777 89999999999998877762 22223333332 4678889999
Q ss_pred ceEEEEECCCCccccceeeeeeecCCCCcceE-EEEEcCCCCEEEEEeCCCeEEEEe
Q psy9598 787 GLIIIWDILSSKQRGYKWFHNIVEGQGEGALF-DGKWSPDGTTCALTDSYGHLLVYG 842 (1915)
Q Consensus 787 G~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~-~vafSpdg~~Lasg~~dG~I~Iwd 842 (1915)
|.|.+||..+++. +..+. +. ...+. .... .+..|++++.+|.|+.|+
T Consensus 328 g~l~~~d~~tG~~--~~~~~--~~---~~~~~~~~~~--~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 328 GYLHWINVEDGRF--VAQQK--VD---SSGFQTEPVA--ADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp SEEEEEETTTCCE--EEEEE--CC---TTCBCSCCEE--ETTEEEEEBTTSCEEEEE
T ss_pred CeEEEEECCCCcE--EEEEe--cC---CCcceeCCEE--ECCEEEEEeCCCEEEEEe
Confidence 9999999999887 44433 11 11111 1111 256788889999999886
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.16 E-value=2.9e-09 Score=142.33 Aligned_cols=329 Identities=8% Similarity=-0.031 Sum_probs=202.0
Q ss_pred CCEEEEEECCCcEEEEECCCCcEEEEEeCCCCC-----------EEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEe
Q psy9598 488 GEVIVTGADDLLIKLWRARDGKLLATLRGCSGE-----------ISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVL 556 (1915)
Q Consensus 488 g~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~-----------I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l 556 (1915)
+..|++++.++.|..+|..+|+.+..+...... ...+++ ++..|+.++.|+.|..+|..+|+.+..+
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 154 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEVWHQ 154 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEEeee
Confidence 567888888899999999999999988644210 112333 4568888899999999999999999888
Q ss_pred ecC-CC-CeEEEEeccCccCCCcEEEEEeC------CCeEEEEecccCccccceeccCccc---c--------ccccC--
Q psy9598 557 VGH-QG-IITGVNFCPLEVNGFNYLASTST------DGCIGFWKYKLDIDISKTVFHEPVM---F--------NERIR-- 615 (1915)
Q Consensus 557 ~~h-~~-~V~sl~fsp~~~~d~~~L~sgs~------DgtI~iWDl~~~~~~~~~~~~~~~~---~--------~~~~~-- 615 (1915)
..+ .. ....+...|.- .+..+++++. +|.|..||..+++.+.......+.. + ...+.
T Consensus 155 ~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~ 232 (677)
T 1kb0_A 155 NTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPS 232 (677)
T ss_dssp ETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGG
T ss_pred cCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCcccccccccccccccccccc
Confidence 754 20 00111112211 1245555553 7999999999998776654432110 0 00000
Q ss_pred -------CCCCceEEEEECCCCcEEEEEeCCC-------------------eEEEEEecCCCCCceeEEec--cCC----
Q psy9598 616 -------PGNAHILCSSFSPGGLFLATGSGDH-------------------HVRVYKMDGVDSPLGILEVE--EHS---- 663 (1915)
Q Consensus 616 -------~~~~~V~~l~fspdg~~Lasgs~Dg-------------------~I~IwDl~~~~~~~~i~~l~--~h~---- 663 (1915)
.+......+++++++..|++++.++ .|..+|..+ ...+..+. .|.
T Consensus 233 g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~T---G~~~W~~~~~~~d~wd~ 309 (677)
T 1kb0_A 233 GKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDT---GKYKWHYQETPGDNWDY 309 (677)
T ss_dssp GCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTT---CCEEEEEESSTTCCSCC
T ss_pred CceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCC---CCEEEEEecCCCccccc
Confidence 1112223678899888888887764 488888743 23333322 221
Q ss_pred ---CCeeEEEEcCCC---CEEEEEeCCCcEEEEEccCCceEEeeeccccc------CCCCcc-------------cc-cc
Q psy9598 664 ---DKVDSIQWSHSH---LRFVSGSRDGTALIWYYKCSQWRFIRLDMNTC------LPHTKE-------------TS-DE 717 (1915)
Q Consensus 664 ---~~V~sl~fspdg---~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~------~~~~~~-------------~~-~~ 717 (1915)
.....+....+| ..|++++.+|.|.++|..+++.+......... ...... .. ..
T Consensus 310 ~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~ 389 (677)
T 1kb0_A 310 TSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGP 389 (677)
T ss_dssp CCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCT
T ss_pred ccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCc
Confidence 122223334467 68999999999999999999865432111000 000000 00 00
Q ss_pred ccccccEEEEEECCCCCEEEEEEec------------------------------------------CCeEEEEECCCCc
Q psy9598 718 TNKKIKVTMVAWDASDRWVITAINF------------------------------------------NFQIKIWDAFNGD 755 (1915)
Q Consensus 718 ~~~~~~V~~va~spdg~~L~t~s~~------------------------------------------Dg~I~vwD~~tg~ 755 (1915)
.+. ..-..++++|++.++++.... .|.|..||+.+++
T Consensus 390 ~G~-~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~ 468 (677)
T 1kb0_A 390 YGA-HNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQK 468 (677)
T ss_dssp TCS-SCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTE
T ss_pred ccc-cCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCc
Confidence 000 111257889998888876530 2789999999999
Q ss_pred eEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEE
Q psy9598 756 LVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALT 832 (1915)
Q Consensus 756 ~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg 832 (1915)
.+..+... ..+....+.. .+.++++++.||.|++||+.+++. +..+.. . +.....-+.|+.+|+.+++.
T Consensus 469 ~~W~~~~~-~~~~~g~~~~-~g~~v~~g~~dg~l~a~D~~tG~~--lw~~~~--~--~~~~~~p~~y~~~G~~~v~~ 537 (677)
T 1kb0_A 469 AAWSVEHV-SPWNGGTLTT-AGNVVFQGTADGRLVAYHAATGEK--LWEAPT--G--TGVVAAPSTYMVDGRQYVSV 537 (677)
T ss_dssp EEEEEEES-SSCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCE--EEEEEC--S--SCCCSCCEEEEETTEEEEEE
T ss_pred EEeecCCC-CCCcCcceEe-CCCEEEEECCCCcEEEEECCCCce--eeeeeC--C--CCcccCCEEEEeCCEEEEEE
Confidence 98887633 3344444555 677888899999999999999998 666551 1 11222345567788755443
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.14 E-value=7.4e-09 Score=138.62 Aligned_cols=329 Identities=10% Similarity=0.044 Sum_probs=199.9
Q ss_pred CCEEEEEECCCcEEEEECCCCcEEEEEeCCCCC----------E-EEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEe
Q psy9598 488 GEVIVTGADDLLIKLWRARDGKLLATLRGCSGE----------I-SDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVL 556 (1915)
Q Consensus 488 g~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~----------I-~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l 556 (1915)
+..|++++.++.|..+|..+|+.+..+..+... + ..+++ .+..|++++.|+.|..||..+|+.+..+
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W~~ 147 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAWSV 147 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEeeee
Confidence 667888888999999999999999988644321 1 11222 3557888999999999999999998877
Q ss_pred ecC--CCCeEEEEeccCccCCCcEEEEEe------CCCeEEEEecccCccccceecc--Ccccc---------ccccC--
Q psy9598 557 VGH--QGIITGVNFCPLEVNGFNYLASTS------TDGCIGFWKYKLDIDISKTVFH--EPVMF---------NERIR-- 615 (1915)
Q Consensus 557 ~~h--~~~V~sl~fsp~~~~d~~~L~sgs------~DgtI~iWDl~~~~~~~~~~~~--~~~~~---------~~~~~-- 615 (1915)
... ......+..+|.- .+ ..+++++ .+|.|..||..+++.+...... .+... .....
T Consensus 148 ~~~~~~~~~~~~~~sP~v-~~-g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~ 225 (689)
T 1yiq_A 148 DTRADHKRSYTITGAPRV-VN-GKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGD 225 (689)
T ss_dssp ECCSCTTSCCBCCSCCEE-ET-TEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSS
T ss_pred cCcCCCCCCccccCCcEE-EC-CEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCc
Confidence 642 1111222223321 12 3445544 3789999999999876654421 01000 00000
Q ss_pred ------CCCCceEEEEECCCCcEEEEEeCCCe-------------------EEEEEecCCCCCceeEEecc--CC-----
Q psy9598 616 ------PGNAHILCSSFSPGGLFLATGSGDHH-------------------VRVYKMDGVDSPLGILEVEE--HS----- 663 (1915)
Q Consensus 616 ------~~~~~V~~l~fspdg~~Lasgs~Dg~-------------------I~IwDl~~~~~~~~i~~l~~--h~----- 663 (1915)
.+......+++++++.+|++++.++. |..||..+ ...+..+.. |.
T Consensus 226 ~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~T---G~~~W~~~~~~~d~wd~~ 302 (689)
T 1yiq_A 226 AYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADT---GEYVWHYQTTPGDAWDYT 302 (689)
T ss_dssp THHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTT---CCEEEEEESSTTCCSCCC
T ss_pred eeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccC---CceeEeeecCCccccccc
Confidence 11112236788998889999988764 88999843 333333332 21
Q ss_pred --CCeeEEEEcCCCC---EEEEEeCCCcEEEEEccCCceEEeeecccccC---------------------CCCcc--cc
Q psy9598 664 --DKVDSIQWSHSHL---RFVSGSRDGTALIWYYKCSQWRFIRLDMNTCL---------------------PHTKE--TS 715 (1915)
Q Consensus 664 --~~V~sl~fspdg~---~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~---------------------~~~~~--~~ 715 (1915)
..+....+..+|. .|+.++.+|.++++|..+++.+.......... +.... ..
T Consensus 303 ~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~ 382 (689)
T 1yiq_A 303 ATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVT 382 (689)
T ss_dssp CCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEES
T ss_pred CCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeC
Confidence 1222222233564 78899999999999999998653221100000 00000 00
Q ss_pred ccccccccEEEEEECCCCCEEEEEEec--------------------------------------------CCeEEEEEC
Q psy9598 716 DETNKKIKVTMVAWDASDRWVITAINF--------------------------------------------NFQIKIWDA 751 (1915)
Q Consensus 716 ~~~~~~~~V~~va~spdg~~L~t~s~~--------------------------------------------Dg~I~vwD~ 751 (1915)
...........++|+|+..+|++.... +|.|..||+
T Consensus 383 p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~ 462 (689)
T 1yiq_A 383 PAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDP 462 (689)
T ss_dssp SCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEET
T ss_pred CCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEEC
Confidence 000000112237888988888876431 378999999
Q ss_pred CCCceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEE
Q psy9598 752 FNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCAL 831 (1915)
Q Consensus 752 ~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Las 831 (1915)
.+|+.+..+..+.. +....+.. .+.+|++|+.||.|++||..+|+. +..+.. .+.....-+.|+.+|+..++
T Consensus 463 ~tG~~~W~~~~~~~-~~~g~~~t-agglvf~gt~dg~l~a~D~~tG~~--lw~~~~----~~~~~~~p~ty~~~G~qyv~ 534 (689)
T 1yiq_A 463 VKQQAAWEVPYVTI-FNGGTLST-AGNLVFEGSADGRVIAYAADTGEK--LWEQPA----ASGVMAAPVTYSVDGEQYVT 534 (689)
T ss_dssp TTTEEEEEEEESSS-CCCCEEEE-TTTEEEEECTTSEEEEEETTTCCE--EEEEEC----SSCCCSCCEEEEETTEEEEE
T ss_pred CCCCeEeEccCCCC-ccCccceE-CCCEEEEECCCCcEEEEECCCCcc--ceeeeC----CCCcccCceEEEECCEEEEE
Confidence 99999988876543 33334455 678899999999999999999998 665541 11112233667788875443
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.11 E-value=2.5e-08 Score=125.16 Aligned_cols=255 Identities=9% Similarity=0.024 Sum_probs=162.5
Q ss_pred CCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCC--eEEEEecccC
Q psy9598 519 GEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDG--CIGFWKYKLD 596 (1915)
Q Consensus 519 ~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~Dg--tI~iWDl~~~ 596 (1915)
.....|+|++++.++++...++.|++||+.++.....+.... ... ++|++. ++.|+++..++ .|.+|+...+
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~-~~~-ia~~~~----g~~l~~~d~~~~~~I~~~d~~~~ 204 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFK-GGK-PAVTKD----KQRVYSIGWEGTHTVYVYMKASG 204 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCC-BCB-CEECTT----SSEEEEEBSSTTCEEEEEEGGGT
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCC-CCc-eeEecC----CCcEEEEecCCCceEEEEEcCCC
Confidence 357899999999988888888999999999887766555432 233 899984 47888887766 7888887655
Q ss_pred ccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeE-E--eccCCCCe--eEEEE
Q psy9598 597 IDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGIL-E--VEEHSDKV--DSIQW 671 (1915)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~-~--l~~h~~~V--~sl~f 671 (1915)
......... .......+.+++++|++..|+++..++.|+.||..+.. ..+. . ..++.... ..|+|
T Consensus 205 ~~~~~~g~~--------~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~--~~~~~~~~~~g~~~~~P~~~ia~ 274 (409)
T 3hrp_A 205 WAPTRIGQL--------GSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQE--VTLIKQLELSGSLGTNPGPYLIY 274 (409)
T ss_dssp TCEEEEEEC--------CTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCC--EEEEEECCCCSCCCCSSCCEEEE
T ss_pred ceeEEeeec--------cchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCC--EEEEecccccCCCCCCccccEEE
Confidence 321111000 00123556789999954455557778899999984322 1111 0 12222222 39999
Q ss_pred cCC-CCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEE
Q psy9598 672 SHS-HLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWD 750 (1915)
Q Consensus 672 spd-g~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD 750 (1915)
+|+ +.++++...++.|+.|+..... .. ...... .............-.....++++++|.++++-...++.|++|+
T Consensus 275 ~p~~g~lyv~d~~~~~I~~~~~~g~~-~~-~~g~~~-~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~ 351 (409)
T 3hrp_A 275 YFVDSNFYMSDQNLSSVYKITPDGEC-EW-FCGSAT-QKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLD 351 (409)
T ss_dssp ETTTTEEEEEETTTTEEEEECTTCCE-EE-EEECTT-CCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEE
T ss_pred eCCCCEEEEEeCCCCEEEEEecCCCE-EE-EEeCCC-CCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEE
Confidence 995 6666666778899999876542 11 111100 0000000000111235788999999995555440489999999
Q ss_pred CCCCceEEEeeCC---------------CCCeEEEEEccCCCCEEEEEecCceEEEEEC
Q psy9598 751 AFNGDLVQVLKGH---------------TNEVFVLESHPFDSRVLLSAGHDGLIIIWDI 794 (1915)
Q Consensus 751 ~~tg~~i~~l~gH---------------~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl 794 (1915)
+.++.. .++.++ -.....|++++ ++.++++-..++.|+.+++
T Consensus 352 ~~~G~v-~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~-~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 352 ILDGYV-STVAGQVDVASQIDGTPLEATFNYPYDICYDG-EGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp TTTTEE-EEEEECTTCBSCCCBSTTTCCBSSEEEEEECS-SSEEEEEESTTCEEEEEEE
T ss_pred CCCCEE-EEEeCCCCCCCcCCCChhceEeCCceEEEEcC-CCCEEEEECCCCeEEEEEe
Confidence 877764 444444 23578999999 7888888888888888765
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.10 E-value=2.3e-09 Score=131.38 Aligned_cols=275 Identities=9% Similarity=0.018 Sum_probs=172.4
Q ss_pred CcEEEEEEcCCCCEEEEEE--CCCcEEEEECCCCcEEEEE-------eCCCCCEEEEEEeCCCCEEEEEeC-----CCcE
Q psy9598 477 SAVFCVLFDKLGEVIVTGA--DDLLIKLWRARDGKLLATL-------RGCSGEISDIAIDNRNILLAAGTV-----DKTI 542 (1915)
Q Consensus 477 ~~V~~vafspdg~~LaTGs--~Dg~I~IWd~~tg~~~~~l-------~gH~~~I~~Lafspdg~~LaSgs~-----DgtI 542 (1915)
..+..|+++++|+++++.. .++.+.||.+.++.+. .+ .+|-..+.+|+|+++++++++.+. ++.|
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i 95 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL 95 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence 7899999999999988864 2343566665566543 22 235568999999999987776543 5789
Q ss_pred EEEECCCCceEEEeecC------CCCeEEEEeccCccCCCcEEEEEe---CCCeEEEEecccCccccceeccCccccccc
Q psy9598 543 RIWNLQTLAPISVLVGH------QGIITGVNFCPLEVNGFNYLASTS---TDGCIGFWKYKLDIDISKTVFHEPVMFNER 613 (1915)
Q Consensus 543 rVWDl~tg~~~~~l~~h------~~~V~sl~fsp~~~~d~~~L~sgs---~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~ 613 (1915)
.+||+.+++.+..+..+ ...+..|++.+. ++..+++.+ .++.|.+||+.++........+. .
T Consensus 96 ~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~---~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~------~ 166 (343)
T 2qe8_A 96 VAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLI---HNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYP------G 166 (343)
T ss_dssp EEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETT---TTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCT------T
T ss_pred EEEECCCCeEEEEEECChhhcccccccceEEEecC---CCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCC------c
Confidence 99999999877766532 235689999873 235556655 67899999998765322111100 0
Q ss_pred cCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEcc
Q psy9598 614 IRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYK 693 (1915)
Q Consensus 614 ~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~ 693 (1915)
..+. . ..+.++|..+.+++.+|.+..|.. .+..|+|+|+|..|+++..++. ++|.+.
T Consensus 167 ~~~~--~---~~~~~~g~~~~~~~~~g~~~~~~~-----------------~~~gia~s~dg~~ly~~~~~~~-~l~~~~ 223 (343)
T 2qe8_A 167 IAPE--D---IDLVIDGVPVQIGQPDGTVIRPHL-----------------GVNGIVLDAENEWLYLSPMHST-SMYRIK 223 (343)
T ss_dssp TSCC--S---CCCEETTEECBEECTTSCEECCCC-----------------CEEEEEECTTSCEEEEEESSCS-EEEEEE
T ss_pred cccc--c---cceeECCEEEEeccCCCceeceec-----------------ccceeEeccCCCEEEEEeCCCC-eEEEEE
Confidence 0000 0 234446766777777777766532 3578999999998888877664 455443
Q ss_pred CCceEEeeecccccCCCCccc--cccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeC-CCCCeEEE
Q psy9598 694 CSQWRFIRLDMNTCLPHTKET--SDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKG-HTNEVFVL 770 (1915)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~g-H~~~V~sl 770 (1915)
..... .......... ....+.......++++++|.++++... ++.|.+||..+++....... +...+.+|
T Consensus 224 ~~~~~------~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~-~~~V~~~d~~~G~~~~~~~~~~~~~p~~v 296 (343)
T 2qe8_A 224 SADLS------NLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLA-HSAIGVITSADRAYKLLVTDEKLSWTDSF 296 (343)
T ss_dssp HHHHT------CTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGG-GTEEEEEETTTTEEEEEEECGGGSCEEEE
T ss_pred HHHhc------CCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccC-CCeEEEEECCCCCEEEEEECCceecCCee
Confidence 21100 0000000000 000012224556899999987766655 89999999866765444332 24568999
Q ss_pred EEccCCCCEEEEEecCceEEEE
Q psy9598 771 ESHPFDSRVLLSAGHDGLIIIW 792 (1915)
Q Consensus 771 ~~sp~dg~~LaSgs~DG~I~IW 792 (1915)
+|.+ ++.++++.+..+.+.+|
T Consensus 297 a~~~-~g~l~v~~~~~~~~~~f 317 (343)
T 2qe8_A 297 NFGS-DGYLYFDCNQLHHSAPL 317 (343)
T ss_dssp EECT-TSCEEEEECCGGGSGGG
T ss_pred EECC-CCcEEEEeCcccccccc
Confidence 9998 78888877755544433
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.08 E-value=5e-08 Score=116.71 Aligned_cols=235 Identities=9% Similarity=0.029 Sum_probs=156.0
Q ss_pred EecCCCCcEEEEEEcCC-CCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCC
Q psy9598 471 VNLGHLSAVFCVLFDKL-GEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQT 549 (1915)
Q Consensus 471 ~l~gH~~~V~~vafspd-g~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~t 549 (1915)
.+..+..-.-+.+|+++ +.++++...++.|..||..++... .+. +...+.+++++++|+++++ . ++.|.+||..+
T Consensus 7 ~~~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~ 82 (297)
T 3g4e_A 7 VLPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RVT-MDAPVSSVALRQSGGYVAT-I-GTKFCALNWKE 82 (297)
T ss_dssp EECCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EEE-CSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTT
T ss_pred EeccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EEe-CCCceEEEEECCCCCEEEE-E-CCeEEEEECCC
Confidence 34455566778999995 556667777899999999888653 333 4568999999999996655 4 56799999988
Q ss_pred CceEEEeec----CCCCeEEEEeccCccCCCcEEEEEeCC---------CeEEEEecccCccccceeccCccccccccCC
Q psy9598 550 LAPISVLVG----HQGIITGVNFCPLEVNGFNYLASTSTD---------GCIGFWKYKLDIDISKTVFHEPVMFNERIRP 616 (1915)
Q Consensus 550 g~~~~~l~~----h~~~V~sl~fsp~~~~d~~~L~sgs~D---------gtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~ 616 (1915)
+........ ....++++++.|+ ++++++.... ....+|.+.......... .
T Consensus 83 g~~~~~~~~~~~~~~~~~~di~~d~d----G~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~------------~ 146 (297)
T 3g4e_A 83 QSAVVLATVDNDKKNNRFNDGKVDPA----GRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYF------------D 146 (297)
T ss_dssp TEEEEEEECCTTCSSEEEEEEEECTT----SCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEE------------E
T ss_pred CcEEEEEecCCCCCCCCCCCEEECCC----CCEEEecCCcccccccccCCCcEEEEEECCCCEEEEe------------e
Confidence 775433322 1235788999884 4655544321 234555554322111110 1
Q ss_pred CCCceEEEEECCCCcEE-EEEeCCCeEEEEEecC-CCCC---ceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEE
Q psy9598 617 GNAHILCSSFSPGGLFL-ATGSGDHHVRVYKMDG-VDSP---LGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWY 691 (1915)
Q Consensus 617 ~~~~V~~l~fspdg~~L-asgs~Dg~I~IwDl~~-~~~~---~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWD 691 (1915)
+......++|+|+++.| ++.+.++.|.+|+++. .... ..+..+..+.+....++++++|.+.++....+.|.+||
T Consensus 147 ~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d 226 (297)
T 3g4e_A 147 QVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLD 226 (297)
T ss_dssp EESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEEC
T ss_pred ccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEc
Confidence 11346789999999866 4555678999999841 1111 11223334456788999999998888888888999999
Q ss_pred ccCCceEEeeecccccCCCCccccccccccccEEEEEEC-CCCCEEEEEEe
Q psy9598 692 YKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWD-ASDRWVITAIN 741 (1915)
Q Consensus 692 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~s-pdg~~L~t~s~ 741 (1915)
..+++...... .....+++++|. |++..|++++.
T Consensus 227 ~~tG~~~~~i~----------------~p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 227 PVTGKRLQTVK----------------LPVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp TTTCCEEEEEE----------------CSSSBEEEEEEESGGGCEEEEEEB
T ss_pred CCCceEEEEEE----------------CCCCCceEEEEeCCCCCEEEEEcC
Confidence 98777543221 123468999998 88888887765
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.08 E-value=3.9e-08 Score=117.66 Aligned_cols=238 Identities=14% Similarity=0.093 Sum_probs=155.1
Q ss_pred eCCCCCEEEEEEeCC-CCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEec
Q psy9598 515 RGCSGEISDIAIDNR-NILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKY 593 (1915)
Q Consensus 515 ~gH~~~I~~Lafspd-g~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl 593 (1915)
..+..-.-+..|+++ +.++++...++.|..||..++... .+ .+...+.+++++++ +.+++ +. ++.|.+||.
T Consensus 9 ~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~-~~~~~~~~i~~~~d----G~l~v-~~-~~~l~~~d~ 80 (297)
T 3g4e_A 9 PENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RV-TMDAPVSSVALRQS----GGYVA-TI-GTKFCALNW 80 (297)
T ss_dssp CCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EE-ECSSCEEEEEEBTT----SSEEE-EE-TTEEEEEET
T ss_pred ccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EE-eCCCceEEEEECCC----CCEEE-EE-CCeEEEEEC
Confidence 334445678899995 556667777899999999887653 33 24568999999984 35444 44 567999998
Q ss_pred ccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCC---------CeEEEEEecCCCCCceeEEeccCCC
Q psy9598 594 KLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGD---------HHVRVYKMDGVDSPLGILEVEEHSD 664 (1915)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~D---------g~I~IwDl~~~~~~~~i~~l~~h~~ 664 (1915)
.++......... .......+..++++++|+++++.... ....||.+..... +..+..+..
T Consensus 81 ~~g~~~~~~~~~--------~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~---~~~~~~~~~ 149 (297)
T 3g4e_A 81 KEQSAVVLATVD--------NDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHH---VKKYFDQVD 149 (297)
T ss_dssp TTTEEEEEEECC--------TTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSC---EEEEEEEES
T ss_pred CCCcEEEEEecC--------CCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCC---EEEEeeccc
Confidence 776421111100 00112457899999999976654322 3345666643221 222333445
Q ss_pred CeeEEEEcCCCCEEE-EEeCCCcEEEEEc--cCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEe
Q psy9598 665 KVDSIQWSHSHLRFV-SGSRDGTALIWYY--KCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAIN 741 (1915)
Q Consensus 665 ~V~sl~fspdg~~L~-sgs~DG~I~IWDl--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~ 741 (1915)
....++|+|++..|+ +.+.++.|.+|++ .++....... .............++++++|.+.++...
T Consensus 150 ~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~-----------~~~~~~~~~~p~g~~~d~~G~lwva~~~ 218 (297)
T 3g4e_A 150 ISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRS-----------VYKLEKEEQIPDGMCIDAEGKLWVACYN 218 (297)
T ss_dssp BEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEE-----------EEECCGGGCEEEEEEEBTTSCEEEEEET
T ss_pred cccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEE-----------EEECCCCCCCCCeeEECCCCCEEEEEcC
Confidence 578999999998664 5566789999987 3444211000 0001112345678999999976666655
Q ss_pred cCCeEEEEECCCCceEEEeeCCCCCeEEEEEc-cCCCCEEEEEe
Q psy9598 742 FNFQIKIWDAFNGDLVQVLKGHTNEVFVLESH-PFDSRVLLSAG 784 (1915)
Q Consensus 742 ~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~s-p~dg~~LaSgs 784 (1915)
.+.|.+||..+|+++..+..+...+++++|. | ++..|+.++
T Consensus 219 -~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~-d~~~L~vt~ 260 (297)
T 3g4e_A 219 -GGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGK-NYSEMYVTC 260 (297)
T ss_dssp -TTEEEEECTTTCCEEEEEECSSSBEEEEEEESG-GGCEEEEEE
T ss_pred -CCEEEEEcCCCceEEEEEECCCCCceEEEEeCC-CCCEEEEEc
Confidence 7889999999999999999887889999998 7 655554443
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.06 E-value=1.8e-08 Score=121.00 Aligned_cols=236 Identities=8% Similarity=-0.040 Sum_probs=152.7
Q ss_pred EecCCCCcEEEEEEcCCCC-EEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCC
Q psy9598 471 VNLGHLSAVFCVLFDKLGE-VIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQT 549 (1915)
Q Consensus 471 ~l~gH~~~V~~vafspdg~-~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~t 549 (1915)
.+..+.......+|+++|+ +++++..++.|..|+. ++. +..+..+...+..++++++|+++++...++.|.+|+..
T Consensus 39 ~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~- 115 (305)
T 3dr2_A 39 TLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD- 115 (305)
T ss_dssp EEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-
T ss_pred EEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-
Confidence 3444556788999999998 6677778899999998 555 34555667789999999999977766666889999986
Q ss_pred CceEEEeecC----CCCeEEEEeccCccCCCcEEEE----EeC-------------CCeEEEEecccCccccceeccCcc
Q psy9598 550 LAPISVLVGH----QGIITGVNFCPLEVNGFNYLAS----TST-------------DGCIGFWKYKLDIDISKTVFHEPV 608 (1915)
Q Consensus 550 g~~~~~l~~h----~~~V~sl~fsp~~~~d~~~L~s----gs~-------------DgtI~iWDl~~~~~~~~~~~~~~~ 608 (1915)
+......... ...++++++.++ +.++++ |.. .+.|..||..++......
T Consensus 116 g~~~~~~~~~~~~~~~~~~~i~~d~d----G~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~------ 185 (305)
T 3dr2_A 116 GQAHLLVGRYAGKRLNSPNDLIVARD----GAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA------ 185 (305)
T ss_dssp SCEEEEECEETTEECSCCCCEEECTT----SCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE------
T ss_pred CCEEEEEeccCCCccCCCCCEEECCC----CCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe------
Confidence 5543222111 134678999884 467765 332 245666776555321111
Q ss_pred ccccccCCCCCceEEEEECCCCcEEEEEeCC------CeEEEEEecCCCCCceeEE-eccCCCCeeEEEEcCCCCEEEEE
Q psy9598 609 MFNERIRPGNAHILCSSFSPGGLFLATGSGD------HHVRVYKMDGVDSPLGILE-VEEHSDKVDSIQWSHSHLRFVSG 681 (1915)
Q Consensus 609 ~~~~~~~~~~~~V~~l~fspdg~~Lasgs~D------g~I~IwDl~~~~~~~~i~~-l~~h~~~V~sl~fspdg~~L~sg 681 (1915)
+......++|+|++..|+++... +.|.+|++.... ...... .....+...+|+++++|++. ++
T Consensus 186 --------~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~~~~pdgi~~d~~G~lw-v~ 255 (305)
T 3dr2_A 186 --------DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASVPDGLPDGFCVDRGGWLW-SS 255 (305)
T ss_dssp --------EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECCSSSCCCSEEECTTSCEE-EC
T ss_pred --------cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEECCCCCCCeEEECCCCCEE-Ee
Confidence 11346789999999988777665 789999985422 111111 11234456778999999844 44
Q ss_pred eCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEE
Q psy9598 682 SRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWD 750 (1915)
Q Consensus 682 s~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD 750 (1915)
+.+| |.+|+........+. ....+.+++|++++..|++++. + .|..++
T Consensus 256 ~~~g-v~~~~~~g~~~~~~~------------------~~~~~~~~~f~~d~~~L~it~~-~-~l~~~~ 303 (305)
T 3dr2_A 256 SGTG-VCVFDSDGQLLGHIP------------------TPGTASNCTFDQAQQRLFITGG-P-CLWMLP 303 (305)
T ss_dssp CSSE-EEEECTTSCEEEEEE------------------CSSCCCEEEECTTSCEEEEEET-T-EEEEEE
T ss_pred cCCc-EEEECCCCCEEEEEE------------------CCCceeEEEEeCCCCEEEEEcC-C-eEEEEE
Confidence 4554 899987533211111 0113677999999998888875 4 444443
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.03 E-value=1.9e-08 Score=125.54 Aligned_cols=286 Identities=9% Similarity=-0.017 Sum_probs=183.4
Q ss_pred CCCCEEEEEeC-C----CcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEe----------CCCeEEEEe
Q psy9598 528 NRNILLAAGTV-D----KTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTS----------TDGCIGFWK 592 (1915)
Q Consensus 528 pdg~~LaSgs~-D----gtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs----------~DgtI~iWD 592 (1915)
+++..++++.. + +.|.++|+.+++.+..+..-..+ .++++|++ ++|+++. .++.|.++|
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDg----k~lyVan~~~~~~~~G~~~~~VsviD 155 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDG----SFFAQASTVFERIARGKRTDYVEVFD 155 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTS----SCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCC----CEEEEEeccccccccCCCCCEEEEEE
Confidence 46666655544 2 69999999999999988755555 89999954 6666665 467999999
Q ss_pred cccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeC--CCeEEEEEecCCCCCceeEEeccCCCCeeEEE
Q psy9598 593 YKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSG--DHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQ 670 (1915)
Q Consensus 593 l~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~--Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~ 670 (1915)
..+...+..+.......+. .......+.|+|+|++|+++.. ++.|.++|+.. ...+..+.-.. . ..
T Consensus 156 ~~t~~vv~~I~v~g~~r~~-----~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t---~kvv~~I~v~g--~--~~ 223 (426)
T 3c75_H 156 PVTFLPIADIELPDAPRFL-----VGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEG---KTFDRMLDVPD--C--YH 223 (426)
T ss_dssp TTTCCEEEEEEETTCCCCC-----BSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTT---TEEEEEEECCS--E--EE
T ss_pred CCCCcEEEEEECCCccccc-----cCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCC---CeEEEEEEcCC--c--ee
Confidence 9988765554432000000 0012346789999999998874 57899999843 33333333211 1 22
Q ss_pred EcCCC-CEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEE
Q psy9598 671 WSHSH-LRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIW 749 (1915)
Q Consensus 671 fspdg-~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vw 749 (1915)
..|++ ..+++.+.||.+.+.++.+++...... .... .........+.|++++..++.... .+.|.+.
T Consensus 224 ~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~---~~~~--------v~~~p~~~~~~~~~dg~~~~~~s~-~g~V~Vi 291 (426)
T 3c75_H 224 IFPASPTVFYMNCRDGSLARVDFADGETKVTNT---EVFH--------TEDELLINHPAFSLRSGRLVWPTY-TGKIFQA 291 (426)
T ss_dssp EEEEETTEEEEEETTSSEEEEECCTTCCEEEEC---CCCS--------CTTSCBCSCCEECTTTCEEEEEBT-TSEEEEE
T ss_pred eccCCCcEEEEEcCCCCEEEEECCCCcEEEEee---eeec--------cCCCceeeEeeecCCCCEEEEEeC-CCcEEEE
Confidence 33433 567777888888888875544321100 0000 000111123567889888877776 8899999
Q ss_pred ECCCCceE--EEeeC----------CCCCeEEEEEccCCCCEEEEEec----------CceEEEEECCCCccccceeeee
Q psy9598 750 DAFNGDLV--QVLKG----------HTNEVFVLESHPFDSRVLLSAGH----------DGLIIIWDILSSKQRGYKWFHN 807 (1915)
Q Consensus 750 D~~tg~~i--~~l~g----------H~~~V~sl~~sp~dg~~LaSgs~----------DG~I~IWdl~s~~~~~~~~~~~ 807 (1915)
|+...... ..+.- .......++++| ++..|+++.. ++.|.++|+.+.+. +..+.
T Consensus 292 D~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~-dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kv--v~~I~- 367 (426)
T 3c75_H 292 DLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHR-QSDRIYLLVDQRDEWKHKAASRFVVVLNAETGER--INKIE- 367 (426)
T ss_dssp EECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEG-GGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCE--EEEEE-
T ss_pred eccCCceEEeeeeeeccccccccccccCCceeeEEcC-CCCEEEEEecccccccccCCCCEEEEEECCCCeE--EEEEE-
Confidence 98654322 11110 011122368899 6665555432 35799999999888 66654
Q ss_pred eecCCCCcceEEEEEcCCCC-EEEEEe-CCCeEEEEeCCCCcccccC
Q psy9598 808 IVEGQGEGALFDGKWSPDGT-TCALTD-SYGHLLVYGLGGFKRPQNI 852 (1915)
Q Consensus 808 ~~~~~~~~~V~~vafSpdg~-~Lasg~-~dG~I~Iwdl~s~~~~~~l 852 (1915)
......+++|+|||+ +|+++. .++.|.|+|+.+++.+.++
T Consensus 368 -----vg~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 368 -----LGHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp -----EEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred -----CCCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 113478899999999 888887 5899999999999887765
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=1.1e-08 Score=137.47 Aligned_cols=243 Identities=12% Similarity=0.036 Sum_probs=156.3
Q ss_pred CCCCcEEEEEEcCCCCEEEEEE-----CCCcEEEEECCCCcEEEE-EeCCCCCEEEEEEeCCCCEEEEEeCCCc------
Q psy9598 474 GHLSAVFCVLFDKLGEVIVTGA-----DDLLIKLWRARDGKLLAT-LRGCSGEISDIAIDNRNILLAAGTVDKT------ 541 (1915)
Q Consensus 474 gH~~~V~~vafspdg~~LaTGs-----~Dg~I~IWd~~tg~~~~~-l~gH~~~I~~Lafspdg~~LaSgs~Dgt------ 541 (1915)
+|...|..++|||||++||-+. ....|+|||+.+|+.+.. +.+ .....++|+ ||+.|+.++.+..
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~--~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~ 202 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKD--VKFSGISWL-GNEGFFYSSYDKPDGSELS 202 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEE--EESCCCEEE-TTTEEEEEESSCCC-----
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCC--ceeccEEEe-CCCEEEEEEecCccccccc
Confidence 5667889999999999998543 335799999999986553 221 113567999 9999999887744
Q ss_pred -------EEEEECCCCce--EEEe--ec-CCCCeEEEEeccCccCCCcEEEEEeC----CCeEEEEecccCcc-ccceec
Q psy9598 542 -------IRIWNLQTLAP--ISVL--VG-HQGIITGVNFCPLEVNGFNYLASTST----DGCIGFWKYKLDID-ISKTVF 604 (1915)
Q Consensus 542 -------IrVWDl~tg~~--~~~l--~~-h~~~V~sl~fsp~~~~d~~~L~sgs~----DgtI~iWDl~~~~~-~~~~~~ 604 (1915)
|++|++.++.. ...+ .. |...+.++.|+|+ +.+|+..+. .+.|.+||+.++.. ...+.
T Consensus 203 ~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpD----g~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~- 277 (693)
T 3iuj_A 203 ARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTED----DRFLLISAANSTSGNRLYVKDLSQENAPLLTVQ- 277 (693)
T ss_dssp --CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTT----SCEEEEEEESSSSCCEEEEEETTSTTCCCEEEE-
T ss_pred ccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCC----CCEEEEEEccCCCCcEEEEEECCCCCCceEEEe-
Confidence 99999987653 2233 33 4556788999995 466644332 35889999877632 11111
Q ss_pred cCccccccccCCCCCceEEEEECCCCcEEE-EEeCC---CeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEE
Q psy9598 605 HEPVMFNERIRPGNAHILCSSFSPGGLFLA-TGSGD---HHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVS 680 (1915)
Q Consensus 605 ~~~~~~~~~~~~~~~~V~~l~fspdg~~La-sgs~D---g~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~s 680 (1915)
.+....... |+++|..|+ ++..+ +.|.++++.+.. ......+..|...+. .|++++.+|+.
T Consensus 278 -----------~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~-~~~~~~l~~~~~~~~--~~s~~g~~lv~ 342 (693)
T 3iuj_A 278 -----------GDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPG-PAHWRDLIPERQQVL--TVHSGSGYLFA 342 (693)
T ss_dssp -----------CSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCC-GGGCEEEECCCSSCE--EEEEETTEEEE
T ss_pred -----------CCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCC-ccccEEEecCCCCEE--EEEEECCEEEE
Confidence 122333333 556555544 44333 578888885432 222334556666665 88899988877
Q ss_pred EeCCC---cEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecC----CeEEEEECCC
Q psy9598 681 GSRDG---TALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFN----FQIKIWDAFN 753 (1915)
Q Consensus 681 gs~DG---~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~D----g~I~vwD~~t 753 (1915)
+..++ .|.+|++..+....+. ......+..+.+++++..|+.+.+ + +.|+.||+.+
T Consensus 343 ~~~~~g~~~l~~~d~~g~~~~~l~----------------~p~~~~~~~~~~~~d~~~l~~~~s-s~~tP~~l~~~d~~~ 405 (693)
T 3iuj_A 343 EYMVDATARVEQFDYEGKRVREVA----------------LPGLGSVSGFNGKHDDPALYFGFE-NYAQPPTLYRFEPKS 405 (693)
T ss_dssp EEEETTEEEEEEECTTSCEEEEEC----------------CSSSSEEEECCCCTTCSCEEEEEE-CSSSCCEEEEECTTT
T ss_pred EEEECCeeEEEEEECCCCeeEEee----------------cCCCceEEeeecCCCCCEEEEEec-CCCCCCEEEEEECCC
Confidence 66544 6888888755422211 012235667778888887776665 4 7899999887
Q ss_pred Cce
Q psy9598 754 GDL 756 (1915)
Q Consensus 754 g~~ 756 (1915)
++.
T Consensus 406 g~~ 408 (693)
T 3iuj_A 406 GAI 408 (693)
T ss_dssp CCE
T ss_pred CeE
Confidence 764
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.00 E-value=4e-09 Score=129.24 Aligned_cols=270 Identities=9% Similarity=-0.017 Sum_probs=171.2
Q ss_pred CCEEEEEEeCCCCEEEEEe--CCCcEEEEECCCCceEEEe-------ecCCCCeEEEEeccCccCCCcEEEEEeC-----
Q psy9598 519 GEISDIAIDNRNILLAAGT--VDKTIRIWNLQTLAPISVL-------VGHQGIITGVNFCPLEVNGFNYLASTST----- 584 (1915)
Q Consensus 519 ~~I~~Lafspdg~~LaSgs--~DgtIrVWDl~tg~~~~~l-------~~h~~~V~sl~fsp~~~~d~~~L~sgs~----- 584 (1915)
..+..|+++++|+++++.. .++.++||.+.++.. ..+ .+|...+.+|+|.+. +.++++.+.
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~----g~L~v~D~g~~~~~ 91 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGL-IPFPPQSGNAIITFDTVLGIKSDGN----GIVWMLDNGNQSKS 91 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEE-EESCCCCSSCCCCCSCEEEEEECSS----SEEEEEECHHHHTS
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCe-ecCCCcccCcccceeEeeEEEEcCC----CcEEEEcCCCCcCC
Confidence 6789999999999988864 234356666555543 222 134568999999984 355555443
Q ss_pred CCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCC-cEEEEEe---CCCeEEEEEecCCCCCceeEEec
Q psy9598 585 DGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGG-LFLATGS---GDHHVRVYKMDGVDSPLGILEVE 660 (1915)
Q Consensus 585 DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg-~~Lasgs---~Dg~I~IwDl~~~~~~~~i~~l~ 660 (1915)
++.|.+||+.++..+..+.+.... ..+...+..+++++++ ..+++.. .++.|.+||+... .....+.
T Consensus 92 ~~~i~~~d~~tg~~~~~~~~~~~~------~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g---~~~r~~~ 162 (343)
T 2qe8_A 92 VPKLVAWDTLNNQLSRVIYLPPPI------TLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTG---LAARVLQ 162 (343)
T ss_dssp CCEEEEEETTTTEEEEEEECCTTT------SCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTC---CEEEECT
T ss_pred CCeEEEEECCCCeEEEEEECChhh------cccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCC---CEEEEec
Confidence 578999999887644444332111 1223456889999864 4445554 6789999998432 2333344
Q ss_pred cCCCCee-EEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEE
Q psy9598 661 EHSDKVD-SIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITA 739 (1915)
Q Consensus 661 ~h~~~V~-sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~ 739 (1915)
+|..... ...+..+|..|.+++.+|.+..|. ..+..|+|+++|++|+++
T Consensus 163 ~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~------------------------------~~~~gia~s~dg~~ly~~ 212 (343)
T 2qe8_A 163 GYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPH------------------------------LGVNGIVLDAENEWLYLS 212 (343)
T ss_dssp TCTTTSCCSCCCEETTEECBEECTTSCEECCC------------------------------CCEEEEEECTTSCEEEEE
T ss_pred CCCcccccccceeECCEEEEeccCCCceecee------------------------------cccceeEeccCCCEEEEE
Confidence 4322111 133455677777778888776652 125679999999999988
Q ss_pred EecCCeEEEEECC---CCc-----eEE--EeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeee
Q psy9598 740 INFNFQIKIWDAF---NGD-----LVQ--VLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIV 809 (1915)
Q Consensus 740 s~~Dg~I~vwD~~---tg~-----~i~--~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~ 809 (1915)
......|..++.. .+. ... ...++.+....+++++ ++.++++...++.|.+||..+++. ..+.
T Consensus 213 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~-~G~l~va~~~~~~V~~~d~~~G~~---~~~~--- 285 (343)
T 2qe8_A 213 PMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDK-DHNIYVGDLAHSAIGVITSADRAY---KLLV--- 285 (343)
T ss_dssp ESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECT-TCCEEEEEGGGTEEEEEETTTTEE---EEEE---
T ss_pred eCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECC-CCCEEEEccCCCeEEEEECCCCCE---EEEE---
Confidence 7734466666532 111 000 1123444566789999 899999998999999999855543 1111
Q ss_pred cCCCCcceEEEEEcCCCCEEEEEeCCCeEE
Q psy9598 810 EGQGEGALFDGKWSPDGTTCALTDSYGHLL 839 (1915)
Q Consensus 810 ~~~~~~~V~~vafSpdg~~Lasg~~dG~I~ 839 (1915)
.......+.+++|.++|.++++++..+.+.
T Consensus 286 ~~~~~~~p~~va~~~~g~l~v~~~~~~~~~ 315 (343)
T 2qe8_A 286 TDEKLSWTDSFNFGSDGYLYFDCNQLHHSA 315 (343)
T ss_dssp ECGGGSCEEEEEECTTSCEEEEECCGGGSG
T ss_pred ECCceecCCeeEECCCCcEEEEeCcccccc
Confidence 112235688999999998888776644443
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=98.97 E-value=9.8e-09 Score=126.37 Aligned_cols=179 Identities=8% Similarity=0.013 Sum_probs=131.2
Q ss_pred CeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccc---eeccCccccccccCCCCCceEEEEECCCCcEEEEEeC
Q psy9598 562 IITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISK---TVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSG 638 (1915)
Q Consensus 562 ~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~---~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~ 638 (1915)
.++.+++++.. .+|++|+.++ +.+|++........ ..+. +. ....... |+.++| ++.+|+++ .
T Consensus 39 ~~nlLais~~~----gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~-~~----~~~~lp~-V~~l~f--d~~~L~v~-~ 104 (388)
T 1xip_A 39 SLQNLDISNSK----SLFVAASGSK-AVVGELQLLRDHITSDSTPLT-FK----WEKEIPD-VIFVCF--HGDQVLVS-T 104 (388)
T ss_dssp CCBCEEEETTT----TEEEEEETTE-EEEEEHHHHHHHHHSSSCCCC-CS----EEEECTT-EEEEEE--ETTEEEEE-E
T ss_pred cccEEEEcCCC----CEEEEeCCCE-EEEEEhhHhhhhhcccccccc-ce----EEeeCCC-eeEEEE--CCCEEEEE-c
Confidence 68899999854 8899999886 55598765431000 0011 10 1112335 999999 99999999 8
Q ss_pred CCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccc
Q psy9598 639 DHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDET 718 (1915)
Q Consensus 639 Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~ 718 (1915)
+|.|++||+.... .......|...|.++.+.+. .|++++.||.|.+||+..+....
T Consensus 105 ~~~l~v~dv~sl~---~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~------------------- 160 (388)
T 1xip_A 105 RNALYSLDLEELS---EFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ------------------- 160 (388)
T ss_dssp SSEEEEEESSSTT---CEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE-------------------
T ss_pred CCcEEEEEchhhh---ccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc-------------------
Confidence 8999999995443 33345667778888887755 38899999999999998776321
Q ss_pred cccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCce--EEEe------e---CCCCCeEEEEEccCCCCEEEEE
Q psy9598 719 NKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDL--VQVL------K---GHTNEVFVLESHPFDSRVLLSA 783 (1915)
Q Consensus 719 ~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~--i~~l------~---gH~~~V~sl~~sp~dg~~LaSg 783 (1915)
....|+|++|||+| ++++.. ||.|++|+...+.+ ..++ . +|...|.+|.|.+ ++.+|++-
T Consensus 161 -~~~~Vs~v~WSpkG--~~vg~~-dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~-~~~flv~y 231 (388)
T 1xip_A 161 -LAQNVTSFDVTNSQ--LAVLLK-DRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILS-PQDFLAVF 231 (388)
T ss_dssp -EEESEEEEEECSSE--EEEEET-TSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESS-SSEEEEEE
T ss_pred -ccCCceEEEEcCCc--eEEEEc-CCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEec-CCeEEEEE
Confidence 33579999999999 566766 99999999887775 5666 2 4788999999999 77777764
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=98.95 E-value=1.9e-08 Score=123.54 Aligned_cols=269 Identities=12% Similarity=-0.016 Sum_probs=169.5
Q ss_pred cEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEe----------CCCcEEEEECCCCceEEEeecC-------CC
Q psy9598 499 LIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGT----------VDKTIRIWNLQTLAPISVLVGH-------QG 561 (1915)
Q Consensus 499 ~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs----------~DgtIrVWDl~tg~~~~~l~~h-------~~ 561 (1915)
+|.++|..+++.+.++.....+ .++++||+++|+++. .+++|.+||+.+++.+..+..+ ..
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~ 124 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGP 124 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSC
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCC
Confidence 8889999999999999755556 799999999888886 3689999999999999998643 12
Q ss_pred CeEEEEeccCccCCCcEEEEEeC--CCeEEE--EecccCccccceeccCccccccccCCCCCceEEEEECCCC-cEEEEE
Q psy9598 562 IITGVNFCPLEVNGFNYLASTST--DGCIGF--WKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGG-LFLATG 636 (1915)
Q Consensus 562 ~V~sl~fsp~~~~d~~~L~sgs~--DgtI~i--WDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg-~~Lasg 636 (1915)
....++|+|+ +++|+++.. +..|.+ +|+.+ +..+... + |+.+.|+| ..+++.
T Consensus 125 ~P~~ia~SpD----Gk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~-----------~-----~~~~~p~g~~~~~~~ 181 (368)
T 1mda_H 125 RVHIIGNCAS----SACLLFFLFGSSAAAGLSVPGASD---DQLTKSA-----------S-----CFHIHPGAAATHYLG 181 (368)
T ss_dssp CTTSEEECTT----SSCEEEEECSSSCEEEEEETTTEE---EEEEECS-----------S-----CCCCEEEETTEEECC
T ss_pred CcceEEEcCC----CCEEEEEccCCCCeEEEEEEchhh---ceEEECC-----------C-----ceEEccCCCeEEEEE
Confidence 4568999994 477887764 467888 98876 2222111 0 01122332 234455
Q ss_pred eCCCeEEEEEecCCCCC-ceeE-----EeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEee-ecccccCC
Q psy9598 637 SGDHHVRVYKMDGVDSP-LGIL-----EVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIR-LDMNTCLP 709 (1915)
Q Consensus 637 s~Dg~I~IwDl~~~~~~-~~i~-----~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~-~~~~~~~~ 709 (1915)
+.||.+.+.++...... ..+. .+.-...+. + ++++..++..+. +.|.+.|+.+....... .....
T Consensus 182 ~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~--- 253 (368)
T 1mda_H 182 SCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNE--- 253 (368)
T ss_dssp CCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSC---
T ss_pred cCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEecc---
Confidence 56777767776320000 0000 011112333 3 555666665556 99999998654311110 00000
Q ss_pred CCccccccccccccEEEEEECCCCCEEEEEEe---c-----CCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCC-EE
Q psy9598 710 HTKETSDETNKKIKVTMVAWDASDRWVITAIN---F-----NFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSR-VL 780 (1915)
Q Consensus 710 ~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~---~-----Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~-~L 780 (1915)
.. .............++|++++..++++.. . ++.+.++|+.+++.+..+.... ...+|+|+| +++ ++
T Consensus 254 ~~--~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~-Dg~~l~ 329 (368)
T 1mda_H 254 SG--RKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQ-DGASDN 329 (368)
T ss_dssp TH--HHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECC-SSSCEE
T ss_pred cc--ccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECC-CCCEEE
Confidence 00 0000001111222689999999887643 1 1346699999999999887544 578999999 776 67
Q ss_pred EEEe-cCceEEEEECCCCccccceeee
Q psy9598 781 LSAG-HDGLIIIWDILSSKQRGYKWFH 806 (1915)
Q Consensus 781 aSgs-~DG~I~IWdl~s~~~~~~~~~~ 806 (1915)
++.. .++.|.|+|+.+++. +..+.
T Consensus 330 va~~~~~~~VsVID~~t~kv--v~~I~ 354 (368)
T 1mda_H 330 YANSAGTEVLDIYDAASDQD--QSSVE 354 (368)
T ss_dssp EEEETTTTEEEEEESSSCEE--EEECC
T ss_pred EEccCCCCeEEEEECCCCcE--EEEEE
Confidence 7777 599999999999887 55544
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=98.94 E-value=3.8e-07 Score=110.70 Aligned_cols=227 Identities=10% Similarity=-0.082 Sum_probs=146.4
Q ss_pred CcEEEEEEcCC-CCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEE
Q psy9598 477 SAVFCVLFDKL-GEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISV 555 (1915)
Q Consensus 477 ~~V~~vafspd-g~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~ 555 (1915)
.-..+++|+|+ +.+++++..++.|.+|+..++... .+. +...|.+++|+++|.++++. .+ .|.+||..++.....
T Consensus 49 ~~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~ 124 (326)
T 2ghs_A 49 LLGEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLH 124 (326)
T ss_dssp SBEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEE
T ss_pred CCCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEE
Confidence 34567899997 456667667889999999887653 333 34679999999999877764 44 499999988875433
Q ss_pred eec---C-CCCeEEEEeccCccCCCcEEEEEeCC----CeEEEEecccCccccceeccCccccccccCCCCCceEEEEEC
Q psy9598 556 LVG---H-QGIITGVNFCPLEVNGFNYLASTSTD----GCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFS 627 (1915)
Q Consensus 556 l~~---h-~~~V~sl~fsp~~~~d~~~L~sgs~D----gtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs 627 (1915)
... + ...+++++++|. +.++++...+ +...||.+.++.. ..+. .+......++|+
T Consensus 125 ~~~~~~~~~~~~~~i~~d~~----G~l~v~~~~~~~~~~~~~l~~~~~g~~-~~~~------------~~~~~~~~i~~s 187 (326)
T 2ghs_A 125 AELESDLPGNRSNDGRMHPS----GALWIGTMGRKAETGAGSIYHVAKGKV-TKLF------------ADISIPNSICFS 187 (326)
T ss_dssp ECSSTTCTTEEEEEEEECTT----SCEEEEEEETTCCTTCEEEEEEETTEE-EEEE------------EEESSEEEEEEC
T ss_pred eeCCCCCCCCCCCCEEECCC----CCEEEEeCCCcCCCCceEEEEEeCCcE-EEee------------CCCcccCCeEEc
Confidence 221 1 235889999984 3555544321 2234444433321 1110 011346789999
Q ss_pred CCCcEEEEE-eCCCeEEEEEec--CC-CC--CceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEee
Q psy9598 628 PGGLFLATG-SGDHHVRVYKMD--GV-DS--PLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIR 701 (1915)
Q Consensus 628 pdg~~Lasg-s~Dg~I~IwDl~--~~-~~--~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~ 701 (1915)
++|+.|+.+ +.++.|.+|++. +. .. ...+..+......+.++++.++|.++++...++.|.+|+.. ++.....
T Consensus 188 ~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~-g~~~~~i 266 (326)
T 2ghs_A 188 PDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD-GNHIARY 266 (326)
T ss_dssp TTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT-CCEEEEE
T ss_pred CCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCC-CCEEEEE
Confidence 999876554 557899999984 21 11 11222333345567899999999887777777899999883 4422211
Q ss_pred ecccccCCCCccccccccccccEEEEEEC-CCCCEEEEEEe
Q psy9598 702 LDMNTCLPHTKETSDETNKKIKVTMVAWD-ASDRWVITAIN 741 (1915)
Q Consensus 702 ~~~~~~~~~~~~~~~~~~~~~~V~~va~s-pdg~~L~t~s~ 741 (1915)
......+++++|+ +++..|++++.
T Consensus 267 ----------------~~~~~~~~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 267 ----------------EVPGKQTTCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp ----------------ECSCSBEEEEEEESTTSCEEEEEEB
T ss_pred ----------------ECCCCCcEEEEEecCCCCEEEEEec
Confidence 0123458999998 88888877765
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=3.5e-08 Score=132.72 Aligned_cols=246 Identities=11% Similarity=0.115 Sum_probs=156.0
Q ss_pred CCCCCEEEEEEeCCCCEEEEEe-----CCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCC----
Q psy9598 516 GCSGEISDIAIDNRNILLAAGT-----VDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDG---- 586 (1915)
Q Consensus 516 gH~~~I~~Lafspdg~~LaSgs-----~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~Dg---- 586 (1915)
+|...|..++|||||++||-+. ...+|+|||+.+|+.+.... +.....+++|+ ++ +.|+.++.+.
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~-~~~k~~~~~Ws-Dg----~~l~y~~~~~~~~~ 199 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL-KDVKFSGISWL-GN----EGFFYSSYDKPDGS 199 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE-EEEESCCCEEE-TT----TEEEEEESSCCC--
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc-CCceeccEEEe-CC----CEEEEEEecCcccc
Confidence 4556788999999999888433 33579999999998654311 11113567788 65 6777777664
Q ss_pred ---------eEEEEecccCccccceeccCccccccccCC-CCCceEEEEECCCCcEEEEEeC----CCeEEEEEecCCCC
Q psy9598 587 ---------CIGFWKYKLDIDISKTVFHEPVMFNERIRP-GNAHILCSSFSPGGLFLATGSG----DHHVRVYKMDGVDS 652 (1915)
Q Consensus 587 ---------tI~iWDl~~~~~~~~~~~~~~~~~~~~~~~-~~~~V~~l~fspdg~~Lasgs~----Dg~I~IwDl~~~~~ 652 (1915)
.|.+|++.++.......+..+ . +...+..+.|+|+|++|+.... ...|++||+.+...
T Consensus 200 ~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~--------~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~ 271 (693)
T 3iuj_A 200 ELSARTDQHKVYFHRLGTAQEDDRLVFGAI--------PAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENA 271 (693)
T ss_dssp -----CCCCEEEEEETTSCGGGCEEEESCS--------GGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTC
T ss_pred cccccCCCcEEEEEECCCCcccceEEEecC--------CCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCC
Confidence 388999877643222222210 1 2234678999999998865443 34889999854321
Q ss_pred CceeEEeccCCCCeeEEEEcCCCCEEEEEe-CC---CcEEEEEccCCce---EEeeecccccCCCCccccccccccccEE
Q psy9598 653 PLGILEVEEHSDKVDSIQWSHSHLRFVSGS-RD---GTALIWYYKCSQW---RFIRLDMNTCLPHTKETSDETNKKIKVT 725 (1915)
Q Consensus 653 ~~~i~~l~~h~~~V~sl~fspdg~~L~sgs-~D---G~I~IWDl~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~V~ 725 (1915)
....+..+...+... |+++|..|+..+ .+ +.|.+|++.++.. ..+ ..+...+.
T Consensus 272 --~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l-----------------~~~~~~~~ 331 (693)
T 3iuj_A 272 --PLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDL-----------------IPERQQVL 331 (693)
T ss_dssp --CCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEE-----------------ECCCSSCE
T ss_pred --ceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEE-----------------ecCCCCEE
Confidence 234455566666655 666666555444 33 5788888876542 111 11222233
Q ss_pred EEEECCCCCEEEEEEecCC--eEEEEECCCCceEEEee-CCCCCeEEEEEccCCCCEEEEEecC----ceEEEEECCCCc
Q psy9598 726 MVAWDASDRWVITAINFNF--QIKIWDAFNGDLVQVLK-GHTNEVFVLESHPFDSRVLLSAGHD----GLIIIWDILSSK 798 (1915)
Q Consensus 726 ~va~spdg~~L~t~s~~Dg--~I~vwD~~tg~~i~~l~-gH~~~V~sl~~sp~dg~~LaSgs~D----G~I~IWdl~s~~ 798 (1915)
.|++++.+|+.+...++ .|++|++..+ ....+. .+.+.+..+.+++ ++..|+....+ ++|+.||+.+++
T Consensus 332 --~~s~~g~~lv~~~~~~g~~~l~~~d~~g~-~~~~l~~p~~~~~~~~~~~~-d~~~l~~~~ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 332 --TVHSGSGYLFAEYMVDATARVEQFDYEGK-RVREVALPGLGSVSGFNGKH-DDPALYFGFENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp --EEEEETTEEEEEEEETTEEEEEEECTTSC-EEEEECCSSSSEEEECCCCT-TCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred --EEEEECCEEEEEEEECCeeEEEEEECCCC-eeEEeecCCCceEEeeecCC-CCCEEEEEecCCCCCCEEEEEECCCCe
Confidence 78889999888776455 6889998754 444443 3455677888888 55544443333 789999998776
Q ss_pred c
Q psy9598 799 Q 799 (1915)
Q Consensus 799 ~ 799 (1915)
.
T Consensus 408 ~ 408 (693)
T 3iuj_A 408 I 408 (693)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=98.94 E-value=2.4e-08 Score=122.62 Aligned_cols=268 Identities=6% Similarity=-0.131 Sum_probs=171.2
Q ss_pred CCceeeeEEecCCCCcEEEEEEcCCCCEEEEEE----------CCCcEEEEECCCCcEEEEEeCC-------CCCEEEEE
Q psy9598 463 YSNLRQHYVNLGHLSAVFCVLFDKLGEVIVTGA----------DDLLIKLWRARDGKLLATLRGC-------SGEISDIA 525 (1915)
Q Consensus 463 ~~~~~~~~~l~gH~~~V~~vafspdg~~LaTGs----------~Dg~I~IWd~~tg~~~~~l~gH-------~~~I~~La 525 (1915)
....+...++..-..+ .++|+|||++|+++. .++.|.+||+.+++.+.++..+ ......++
T Consensus 53 ~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia 130 (368)
T 1mda_H 53 AGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIG 130 (368)
T ss_dssp TTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEE
T ss_pred CCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEE
Confidence 4445555555433345 799999999999886 3679999999999999998643 12356799
Q ss_pred EeCCCCEEEEEeC--CCcEEE--EECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEeccc-----C
Q psy9598 526 IDNRNILLAAGTV--DKTIRI--WNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKL-----D 596 (1915)
Q Consensus 526 fspdg~~LaSgs~--DgtIrV--WDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~-----~ 596 (1915)
|+|||++|+++.. +..|.| ||+.+ +..+..- + ++.+.|. +...+++.+.||.+.+.++.+ +
T Consensus 131 ~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~-~---~~~~~p~---g~~~~~~~~~dg~~~~vd~~~~~~~~~ 200 (368)
T 1mda_H 131 NCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSA-S---CFHIHPG---AAATHYLGSCPASLAASDLAAAPAAAG 200 (368)
T ss_dssp ECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECS-S---CCCCEEE---ETTEEECCCCTTSCEEEECCSSCCCCE
T ss_pred EcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECC-C---ceEEccC---CCeEEEEEcCCCCEEEEECccccccCC
Confidence 9999999998874 467888 99877 4444321 1 1223443 235667778899998888876 3
Q ss_pred ccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEecc----------CCCCe
Q psy9598 597 IDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEE----------HSDKV 666 (1915)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~----------h~~~V 666 (1915)
....... ..+..+..+. . ++++..++..+. +.|.+.|+.+.. ...+..+.- +....
T Consensus 201 ~v~~~~t--------~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~-~~v~~~~~~~~~~~~~~~~~p~g~ 266 (368)
T 1mda_H 201 IVGAQCT--------GAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAG-ATMKAAIDGNESGRKADNFRSAGF 266 (368)
T ss_dssp ECCCCSC--------TTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSC-CEEECCCCSSCTHHHHTTEEECSS
T ss_pred eEEEEee--------eeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCc-ceEEEEEEeccccccccccccCcc
Confidence 2211000 0011122333 3 555555555555 899999984311 111111100 11112
Q ss_pred eEEEEcCCCCEEEEEeC---------CCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEE
Q psy9598 667 DSIQWSHSHLRFVSGSR---------DGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVI 737 (1915)
Q Consensus 667 ~sl~fspdg~~L~sgs~---------DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~ 737 (1915)
..++|++++.+|+++.. ++.+.+||+.+.+.+... ........++|+++|++++
T Consensus 267 ~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i-----------------~vg~~p~gi~~s~Dg~~l~ 329 (368)
T 1mda_H 267 QMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPI-----------------SNGHDSDAIIAAQDGASDN 329 (368)
T ss_dssp SCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECC-----------------EEEEEECEEEECCSSSCEE
T ss_pred eeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEE-----------------ECCCCcceEEECCCCCEEE
Confidence 22689999998886543 235669999988744311 0122578899999998766
Q ss_pred EEEe-cCCeEEEEECCCCceEEEeeCCCCCeEEEEEcc
Q psy9598 738 TAIN-FNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHP 774 (1915)
Q Consensus 738 t~s~-~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp 774 (1915)
++.. .++.|.|+|+.+++.+.++..+.. ...|++++
T Consensus 330 va~~~~~~~VsVID~~t~kvv~~I~vg~~-P~~i~~~~ 366 (368)
T 1mda_H 330 YANSAGTEVLDIYDAASDQDQSSVELDKG-PESLSVQN 366 (368)
T ss_dssp EEEETTTTEEEEEESSSCEEEEECCCCSC-CCEEECCC
T ss_pred EEccCCCCeEEEEECCCCcEEEEEECCCC-CCEEEeec
Confidence 6665 489999999999999999986554 34566554
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=98.93 E-value=9.9e-07 Score=109.00 Aligned_cols=266 Identities=9% Similarity=0.018 Sum_probs=166.3
Q ss_pred CCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCCCCe---
Q psy9598 487 LGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGII--- 563 (1915)
Q Consensus 487 dg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V--- 563 (1915)
++..|++++.++.|..+|..+|+.+..+...........+. +..|+.++.++.|..+|..+|+.+..+.......
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~ 179 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLR 179 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----C
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeec
Confidence 36688889999999999999999988776543322222222 3478888889999999999999888776432211
Q ss_pred --EEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccc--cccC-CCCCceEEEEECCCCcEEEEEeC
Q psy9598 564 --TGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFN--ERIR-PGNAHILCSSFSPGGLFLATGSG 638 (1915)
Q Consensus 564 --~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~--~~~~-~~~~~V~~l~fspdg~~Lasgs~ 638 (1915)
...... +..++.++.+|.|..+|..++..+.......+.... ..+. .....+ + .+..|++++.
T Consensus 180 ~~~~~~~~------~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~----~--~~~~v~~~~~ 247 (376)
T 3q7m_A 180 GESAPTTA------FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPV----V--VNGVVFALAY 247 (376)
T ss_dssp CCCCCEEE------TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCE----E--ETTEEEEECT
T ss_pred CCCCcEEE------CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcE----E--ECCEEEEEec
Confidence 111121 257888889999999999988765544433111000 0000 000111 1 2456777888
Q ss_pred CCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccc
Q psy9598 639 DHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDET 718 (1915)
Q Consensus 639 Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~ 718 (1915)
+|.|..+|..+. ..+.... .....++.. ++..|++++.+|.|..+|..+++..........
T Consensus 248 ~g~l~~~d~~tG---~~~w~~~--~~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~------------ 308 (376)
T 3q7m_A 248 NGNLTALDLRSG---QIMWKRE--LGSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLH------------ 308 (376)
T ss_dssp TSCEEEEETTTC---CEEEEEC--CCCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTTT------------
T ss_pred CcEEEEEECCCC---cEEeecc--CCCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccCC------------
Confidence 999999998432 2333222 223444444 366888888999999999999885432210000
Q ss_pred cccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEE
Q psy9598 719 NKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWD 793 (1915)
Q Consensus 719 ~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWd 793 (1915)
..+..... .+..|++++. +|.|.+||..+|+.+..+......+.+.... .+..|+.++.+|.|+.|+
T Consensus 309 ---~~~~~~~~--~~~~l~v~~~-~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~--~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 309 ---RLLTSPVL--YNGNLVVGDS-EGYLHWINVEDGRFVAQQKVDSSGFQTEPVA--ADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp ---SCCCCCEE--ETTEEEEECT-TSEEEEEETTTCCEEEEEECCTTCBCSCCEE--ETTEEEEEBTTSCEEEEE
T ss_pred ---CcccCCEE--ECCEEEEEeC-CCeEEEEECCCCcEEEEEecCCCcceeCCEE--ECCEEEEEeCCCEEEEEe
Confidence 00111111 2467777777 8999999999999988877644433322111 245688889999999987
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=98.92 E-value=7.1e-07 Score=108.30 Aligned_cols=231 Identities=10% Similarity=-0.025 Sum_probs=147.0
Q ss_pred CEEEEEEeCC-CCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCcc
Q psy9598 520 EISDIAIDNR-NILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDID 598 (1915)
Q Consensus 520 ~I~~Lafspd-g~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~ 598 (1915)
...+++|+++ +.+++++..++.|.+||..++... .+. +...|.+++|.++ +.++++ +.+ .|.+||..++..
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~d----g~l~v~-~~~-gl~~~d~~~g~~ 121 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISD----SKQLIA-SDD-GLFLRDTATGVL 121 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEET----TEEEEE-ETT-EEEEEETTTCCE
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeCC----CeEEEE-ECC-CEEEEECCCCcE
Confidence 3467889997 456666667889999999887643 232 3467999999984 355554 444 489999877643
Q ss_pred ccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCC----CeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCC
Q psy9598 599 ISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGD----HHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHS 674 (1915)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~D----g~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspd 674 (1915)
.. + .... .......+.+++++++|+++++...+ +...||.++ .. .+..+..+......++|+++
T Consensus 122 ~~-~-~~~~------~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~-~g---~~~~~~~~~~~~~~i~~s~d 189 (326)
T 2ghs_A 122 TL-H-AELE------SDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA-KG---KVTKLFADISIPNSICFSPD 189 (326)
T ss_dssp EE-E-ECSS------TTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE-TT---EEEEEEEEESSEEEEEECTT
T ss_pred EE-E-eeCC------CCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe-CC---cEEEeeCCCcccCCeEEcCC
Confidence 11 1 1100 00112468899999999876654421 234455553 12 12222233345789999999
Q ss_pred CCEEEEE-eCCCcEEEEEcc--CC-ceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEE
Q psy9598 675 HLRFVSG-SRDGTALIWYYK--CS-QWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWD 750 (1915)
Q Consensus 675 g~~L~sg-s~DG~I~IWDl~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD 750 (1915)
|+.|+.+ +.++.|.+|++. ++ .... ................++++++|.++++... ++.|.+||
T Consensus 190 g~~lyv~~~~~~~I~~~d~~~~~Gl~~~~-----------~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~-~~~v~~~d 257 (326)
T 2ghs_A 190 GTTGYFVDTKVNRLMRVPLDARTGLPTGK-----------AEVFIDSTGIKGGMDGSVCDAEGHIWNARWG-EGAVDRYD 257 (326)
T ss_dssp SCEEEEEETTTCEEEEEEBCTTTCCBSSC-----------CEEEEECTTSSSEEEEEEECTTSCEEEEEET-TTEEEEEC
T ss_pred CCEEEEEECCCCEEEEEEcccccCCcccC-----------ceEEEECCCCCCCCCeeEECCCCCEEEEEeC-CCEEEEEC
Confidence 9876554 567899999985 44 2100 0000000112234578999999987766655 78999999
Q ss_pred CCCCceEEEeeCCCCCeEEEEEc-cCCCCEEEEEe
Q psy9598 751 AFNGDLVQVLKGHTNEVFVLESH-PFDSRVLLSAG 784 (1915)
Q Consensus 751 ~~tg~~i~~l~gH~~~V~sl~~s-p~dg~~LaSgs 784 (1915)
. +++.+..+..+...+++++|+ + ++..|+.++
T Consensus 258 ~-~g~~~~~i~~~~~~~~~~af~g~-d~~~L~vt~ 290 (326)
T 2ghs_A 258 T-DGNHIARYEVPGKQTTCPAFIGP-DASRLLVTS 290 (326)
T ss_dssp T-TCCEEEEEECSCSBEEEEEEEST-TSCEEEEEE
T ss_pred C-CCCEEEEEECCCCCcEEEEEecC-CCCEEEEEe
Confidence 8 688888888777789999998 7 666554443
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=98.91 E-value=1.5e-07 Score=112.97 Aligned_cols=241 Identities=12% Similarity=0.029 Sum_probs=154.8
Q ss_pred EEEEeCCCCCEEEEEEeCCCC-EEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEE
Q psy9598 511 LATLRGCSGEISDIAIDNRNI-LLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIG 589 (1915)
Q Consensus 511 ~~~l~gH~~~I~~Lafspdg~-~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~ 589 (1915)
+..+..+.......+|+++|+ +++++..++.|..|+. ++. +..+..+...+.++++.+. ++++++...++.|.
T Consensus 37 ~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~d----G~l~v~~~~~~~v~ 110 (305)
T 3dr2_A 37 LLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQ----QRLVHCEHGRRAIT 110 (305)
T ss_dssp CEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTT----SCEEEEETTTTEEE
T ss_pred eEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCC----CCEEEEECCCCEEE
Confidence 334444556678899999998 6677778899999998 454 4555566778999999984 46666666668899
Q ss_pred EEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEE----EeC-------------CCeEEEEEecCCCC
Q psy9598 590 FWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLAT----GSG-------------DHHVRVYKMDGVDS 652 (1915)
Q Consensus 590 iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Las----gs~-------------Dg~I~IwDl~~~~~ 652 (1915)
+|+.. +.. ..+... . . ......+.+++++++|.+.++ |.. .+.|..||..+. .
T Consensus 111 ~~~~~-g~~-~~~~~~--~--~---~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g-~ 180 (305)
T 3dr2_A 111 RSDAD-GQA-HLLVGR--Y--A---GKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGS-P 180 (305)
T ss_dssp EECTT-SCE-EEEECE--E--T---TEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSC-C
T ss_pred EECCC-CCE-EEEEec--c--C---CCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCC-c
Confidence 99875 321 111100 0 0 001134677999999998876 432 245566655221 1
Q ss_pred CceeEEeccCCCCeeEEEEcCCCCEEEEEeCC------CcEEEEEccCCceEEeeecccccCCCCccccccccccccEEE
Q psy9598 653 PLGILEVEEHSDKVDSIQWSHSHLRFVSGSRD------GTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTM 726 (1915)
Q Consensus 653 ~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~D------G~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~ 726 (1915)
... +. .......++|+|++..|+++... +.|.+|++.......... .... .......
T Consensus 181 ~~~---~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~-~~~~------------~~~~pdg 243 (305)
T 3dr2_A 181 LQR---MA-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRH-FASV------------PDGLPDG 243 (305)
T ss_dssp CEE---EE-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEE-EECC------------SSSCCCS
T ss_pred EEE---Ee-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeE-EEEC------------CCCCCCe
Confidence 111 12 33457889999999988777665 789999987654111000 0000 1122345
Q ss_pred EEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEE
Q psy9598 727 VAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLII 790 (1915)
Q Consensus 727 va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~ 790 (1915)
++++++|.+.++ .. + .|.+|+. .++.+..+..+. .+.+++|++ +++.|+.++.++..+
T Consensus 244 i~~d~~G~lwv~-~~-~-gv~~~~~-~g~~~~~~~~~~-~~~~~~f~~-d~~~L~it~~~~l~~ 301 (305)
T 3dr2_A 244 FCVDRGGWLWSS-SG-T-GVCVFDS-DGQLLGHIPTPG-TASNCTFDQ-AQQRLFITGGPCLWM 301 (305)
T ss_dssp EEECTTSCEEEC-CS-S-EEEEECT-TSCEEEEEECSS-CCCEEEECT-TSCEEEEEETTEEEE
T ss_pred EEECCCCCEEEe-cC-C-cEEEECC-CCCEEEEEECCC-ceeEEEEeC-CCCEEEEEcCCeEEE
Confidence 889999995444 33 4 4999998 678888887665 588999997 787777777665433
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=8.8e-06 Score=111.19 Aligned_cols=333 Identities=11% Similarity=0.028 Sum_probs=209.7
Q ss_pred CCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeC-------CCCCEEEEEEeCCCCEEEEEeCCCcEEEEEC
Q psy9598 475 HLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRG-------CSGEISDIAIDNRNILLAAGTVDKTIRIWNL 547 (1915)
Q Consensus 475 H~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~g-------H~~~I~~Lafspdg~~LaSgs~DgtIrVWDl 547 (1915)
+...|.+|..+++|.+. .|+.++-|.+|+..++........ ....|.+|...++|.+.+ |+.+ -|.+|+.
T Consensus 213 ~~~~i~~i~~d~~g~lw-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~ 289 (795)
T 4a2l_A 213 GTKQIQAILQQSPTRIW-VATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWI-GTFN-DLNIYHE 289 (795)
T ss_dssp -CCCEEEEEEEETTEEE-EEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEE-EESS-CEEEEET
T ss_pred CCCeeEEEEEcCCCCEE-EEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEE-EeCC-hhheEcC
Confidence 35679999998887654 455554588999887765443222 135699999998887665 4445 4889998
Q ss_pred CCCceEEEeec-------CCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCc
Q psy9598 548 QTLAPISVLVG-------HQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAH 620 (1915)
Q Consensus 548 ~tg~~~~~l~~-------h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (1915)
.++........ ....|.+|...+. ..|..|+.++-|.+|+..+.... ... ..+. . ..-....
T Consensus 290 ~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~-----g~lWigt~~~Gl~~~~~~~~~~~-~~~-~~~~--~--~~l~~~~ 358 (795)
T 4a2l_A 290 GTDSFASYSSNPVENGSLSQRSVRSIFMDSQ-----GGMWLGTYFGGLNYYHPIRNRFK-NIR-NIPY--K--NSLSDNV 358 (795)
T ss_dssp TTTEEEEECCCTTSTTSCSSSCEEEEEECTT-----SCEEEEESSSCEEEECGGGGSSE-EEC-CCTT--S--SSCSCSS
T ss_pred CCCeEEEEecCCCCCCCCCCCcEEEEEEeCC-----cCEEEEECCCCeEEeCCCcccce-EEc-CCCC--C--CCCCCCe
Confidence 87765443221 2356888888763 35677777777888887654321 110 0000 0 0112356
Q ss_pred eEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEe------ccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccC
Q psy9598 621 ILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEV------EEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKC 694 (1915)
Q Consensus 621 V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l------~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~ 694 (1915)
|.++....+|. |.+|+.++-|..|+..... ....... .-....|.+++..++|..|..|+.++-|.+||..+
T Consensus 359 V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~ 436 (795)
T 4a2l_A 359 VSCIVEDKDKN-LWIGTNDGGLNLYNPITQR-FTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNS 436 (795)
T ss_dssp EEEEEECTTSC-EEEEESSSCEEEECTTTCC-EEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTT
T ss_pred eEEEEECCCCC-EEEEECCCCeEEEcCCCCc-EEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCC
Confidence 99999998886 5567777778888863211 1111000 01246799999888887677788878899999988
Q ss_pred CceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeC------CCCCeE
Q psy9598 695 SQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKG------HTNEVF 768 (1915)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~g------H~~~V~ 768 (1915)
++........ .......|.++..+++|.+.+.+ . +-|.+||..++........ +...|.
T Consensus 437 ~~~~~~~~~~------------~~l~~~~v~~i~~d~~g~lwigt-~--~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 501 (795)
T 4a2l_A 437 GQVENFNQRN------------SQLVNENVYAILPDGEGNLWLGT-L--SALVRFNPEQRSFTTIEKEKDGTPVVSKQIT 501 (795)
T ss_dssp CCEEEECTTT------------SCCSCSCEEEEEECSSSCEEEEE-S--SCEEEEETTTTEEEECCBCTTCCBCCCCCEE
T ss_pred CcEEEeecCC------------CCcCCCeeEEEEECCCCCEEEEe-c--CceeEEeCCCCeEEEccccccccccCCceEE
Confidence 7754432100 00134578999999988866654 3 3488899887765443221 235789
Q ss_pred EEEEccCCCCEEEEEecCceEEEEECCCCccccceeeee--eecCCCCcceEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q psy9598 769 VLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHN--IVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGGF 846 (1915)
Q Consensus 769 sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~--~~~~~~~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl~s~ 846 (1915)
++...+ ++.+.+.. . +-|.+|+..++.. .+.. ...+.....|.++...++|.+.+++.. -|..|+..++
T Consensus 502 ~i~~d~-~g~lWigt-~-~Gl~~~~~~~~~~----~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~~--Gl~~~d~~~~ 572 (795)
T 4a2l_A 502 TLFRDS-HKRLWIGG-E-EGLSVFKQEGLDI----QKASILPVSNVTKLFTNCIYEASNGIIWVGTRE--GFYCFNEKDK 572 (795)
T ss_dssp EEEECT-TCCEEEEE-S-SCEEEEEEETTEE----EECCCSCSCGGGGSCEEEEEECTTSCEEEEESS--CEEEEETTTT
T ss_pred EEEECC-CCCEEEEe-C-CceEEEeCCCCeE----EEecCCCCCCCCCCeeEEEEECCCCCEEEEeCC--CceeECCCCC
Confidence 998887 77765544 4 5688888866432 1110 011123357899999999987665543 5788887655
Q ss_pred c
Q psy9598 847 K 847 (1915)
Q Consensus 847 ~ 847 (1915)
.
T Consensus 573 ~ 573 (795)
T 4a2l_A 573 Q 573 (795)
T ss_dssp E
T ss_pred c
Confidence 3
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.85 E-value=1.4e-08 Score=122.60 Aligned_cols=302 Identities=12% Similarity=0.025 Sum_probs=186.2
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCC
Q psy9598 481 CVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQ 560 (1915)
Q Consensus 481 ~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~ 560 (1915)
+++++.+|. |++|+.++.|..|| .+++.+..+..+...+.++.+..+|.+ ..|+.+ |..||. ++..+..+..+.
T Consensus 24 ~~~~d~~g~-l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l-~v~t~~--l~~~d~-~g~~~~~~~~~~ 97 (330)
T 3hxj_A 24 SPILAKNGT-IYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGTI-YFGSDK--VYAINP-DGTEKWRFDTKK 97 (330)
T ss_dssp CCEECTTSC-EECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTEE-CCSSCE--EEEECC-CGGGGGGSCC--
T ss_pred CceEccCCe-EEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCcE-EEecCc--EEEECC-CCcEEEEEECCC
Confidence 345555564 56677888999999 899887766655555677888777754 444444 888886 565543333222
Q ss_pred CCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCC
Q psy9598 561 GIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDH 640 (1915)
Q Consensus 561 ~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg 640 (1915)
..+....+. ...|+.++.++.|..+|.. +......... ...+.++.+.++|. |.+|+.++
T Consensus 98 ~~~~~~~~~------~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~------------~~~~~~~~~~~~g~-l~vgt~~~ 157 (330)
T 3hxj_A 98 AIVSDFTIF------EDILYVTSMDGHLYAINTD-GTEKWRFKTK------------KAIYATPIVSEDGT-IYVGSNDN 157 (330)
T ss_dssp ---CCEEEE------TTEEEEECTTSEEEEECTT-SCEEEEEECS------------SCCCSCCEECTTSC-EEEECTTS
T ss_pred CcccCceEE------CCEEEEEecCCEEEEEcCC-CCEEEEEcCC------------CceeeeeEEcCCCE-EEEEcCCC
Confidence 222233332 2578888889999999987 5432222211 12344556666775 66677889
Q ss_pred eEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccc
Q psy9598 641 HVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNK 720 (1915)
Q Consensus 641 ~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 720 (1915)
.|..||.. ...+..+......+.++.+.+++.+++ ++ +.|..|| .++....... ..
T Consensus 158 ~l~~~d~~----g~~~~~~~~~~~~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g~~~~~~~----------------~~ 213 (330)
T 3hxj_A 158 YLYAINPD----GTEKWRFKTNDAITSAASIGKDGTIYF-GS--DKVYAIN-PDGTEKWNFY----------------AG 213 (330)
T ss_dssp EEEEECTT----SCEEEEEECSSCCCSCCEECTTCCEEE-ES--SSEEEEC-TTSCEEEEEC----------------CS
T ss_pred EEEEECCC----CCEeEEEecCCCceeeeEEcCCCEEEE-Ee--CEEEEEC-CCCcEEEEEc----------------cC
Confidence 99999873 233334444455677788877777544 44 8888998 5554332111 01
Q ss_pred cccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccc
Q psy9598 721 KIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQR 800 (1915)
Q Consensus 721 ~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~ 800 (1915)
...+.+++++++|...+ ++. ++.|..+|. ++..+..+......+.++.+.+ ++ .|..++.+|.|..+|. +++.
T Consensus 214 ~~~~~~~~~~~~g~l~v-~t~-~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~-~g-~l~v~t~~ggl~~~d~-~g~~- 286 (330)
T 3hxj_A 214 YWTVTRPAISEDGTIYV-TSL-DGHLYAINP-DGTEKWRFKTGKRIESSPVIGN-TD-TIYFGSYDGHLYAINP-DGTE- 286 (330)
T ss_dssp SCCCSCCEECTTSCEEE-EET-TTEEEEECT-TSCEEEEEECSSCCCSCCEECT-TS-CEEEECTTCEEEEECT-TSCE-
T ss_pred CcceeceEECCCCeEEE-EcC-CCeEEEECC-CCCEeEEeeCCCCccccceEcC-CC-eEEEecCCCCEEEECC-CCcE-
Confidence 13456677788776544 444 678888874 6777766665544444555554 44 5667888889999996 5554
Q ss_pred cceeeeeeecCCCCcceEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q psy9598 801 GYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGGF 846 (1915)
Q Consensus 801 ~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl~s~ 846 (1915)
+..+. .....+.++....+|. |.+++.+|.+++......
T Consensus 287 -~~~~~-----~~~~~~~~~~~d~~g~-l~~gt~~G~~~~~~~~~~ 325 (330)
T 3hxj_A 287 -KWNFE-----TGSWIIATPVIDENGT-IYFGTRNGKFYALFNLEH 325 (330)
T ss_dssp -EEEEE-----CSSCCCSCCEECTTCC-EEEECTTSCEEEEEC---
T ss_pred -EEEEE-----cCCccccceEEcCCCE-EEEEcCCCeEEEEecccc
Confidence 33332 1234566677777776 555888899998876543
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.84 E-value=1.3e-07 Score=126.48 Aligned_cols=265 Identities=10% Similarity=-0.017 Sum_probs=165.1
Q ss_pred CCCEEEEEECCCcEEEEECCCCcEEEEEeCC-C----CCEEEEEEeCCCCEEEEEeC------CCcEEEEECCCCceEEE
Q psy9598 487 LGEVIVTGADDLLIKLWRARDGKLLATLRGC-S----GEISDIAIDNRNILLAAGTV------DKTIRIWNLQTLAPISV 555 (1915)
Q Consensus 487 dg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH-~----~~I~~Lafspdg~~LaSgs~------DgtIrVWDl~tg~~~~~ 555 (1915)
++..|++++.|+.|..+|..+|+.+..+..+ . ..+.+--.-.++ .|+.++. ++.|+.||..+|+.+..
T Consensus 127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~-~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~ 205 (677)
T 1kb0_A 127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKG-KVIIGNGGAEYGVRGYITAYDAETGERKWR 205 (677)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEEECC-EEEEEecccccCCCCEEEEEECCCCcEEEE
Confidence 3678999999999999999999999988765 2 122211111234 4555543 68999999999999887
Q ss_pred eecCCCC--------------------------------eEEEEeccCccCCCcEEEEEeCCC-----------------
Q psy9598 556 LVGHQGI--------------------------------ITGVNFCPLEVNGFNYLASTSTDG----------------- 586 (1915)
Q Consensus 556 l~~h~~~--------------------------------V~sl~fsp~~~~d~~~L~sgs~Dg----------------- 586 (1915)
+...... ...+++.|. +.+|+.++.++
T Consensus 206 ~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~----~~~vy~~~~~~~~w~~~~~~~~~gd~~~ 281 (677)
T 1kb0_A 206 WFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAE----LNTMYVGTGNGSPWSHKVRSPKGGDNLY 281 (677)
T ss_dssp EESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETT----TTEEEEECCCEESSCHHHHSTTCCCCTT
T ss_pred eccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCC----CCEEEEECCCCccccCCCCCccCCCCee
Confidence 7543211 124566663 36777777664
Q ss_pred --eEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCC---cEEEEEeCCCeEEEEEecCCCCCceeEEecc
Q psy9598 587 --CIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGG---LFLATGSGDHHVRVYKMDGVDSPLGILEVEE 661 (1915)
Q Consensus 587 --tI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg---~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~ 661 (1915)
+|..+|..++.............. .... ......+....+| ..|++++.+|.|+++|..+.. .+..+..
T Consensus 282 ~~sv~AlD~~TG~~~W~~~~~~~d~w--d~~~-~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~---~l~~~~~ 355 (677)
T 1kb0_A 282 LASIVALDPDTGKYKWHYQETPGDNW--DYTS-TQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGK---FISAKNF 355 (677)
T ss_dssp TTEEEEECTTTCCEEEEEESSTTCCS--CCCC-CSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC---EEEEEES
T ss_pred eEEEEEEECCCCCEEEEEecCCCccc--cccc-CCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCC---Eeccccc
Confidence 599999999876655443211000 0000 1222333444477 689999999999999984332 2222111
Q ss_pred C-----------CCCe------------------------eEEEEcCCCCEEEEEeCC----------------------
Q psy9598 662 H-----------SDKV------------------------DSIQWSHSHLRFVSGSRD---------------------- 684 (1915)
Q Consensus 662 h-----------~~~V------------------------~sl~fspdg~~L~sgs~D---------------------- 684 (1915)
. ...+ ..++|+|++.+|++...+
T Consensus 356 ~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~ 435 (677)
T 1kb0_A 356 VPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQ 435 (677)
T ss_dssp SCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTT
T ss_pred cccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccc
Confidence 0 0000 257889988888776542
Q ss_pred ---------------------CcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecC
Q psy9598 685 ---------------------GTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFN 743 (1915)
Q Consensus 685 ---------------------G~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~D 743 (1915)
|.|..||+.+++.+..... ...+....+...+..+++++. |
T Consensus 436 ~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~-----------------~~~~~~g~~~~~g~~v~~g~~-d 497 (677)
T 1kb0_A 436 SGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEH-----------------VSPWNGGTLTTAGNVVFQGTA-D 497 (677)
T ss_dssp GGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEE-----------------SSSCCCCEEEETTTEEEEECT-T
T ss_pred cccccccccccccccCCCCCccEEEEEeCCCCcEEeecCC-----------------CCCCcCcceEeCCCEEEEECC-C
Confidence 7789999988875432210 011222334556778888866 9
Q ss_pred CeEEEEECCCCceEEEeeCCC-CCeEEEEEccCCCCEEE
Q psy9598 744 FQIKIWDAFNGDLVQVLKGHT-NEVFVLESHPFDSRVLL 781 (1915)
Q Consensus 744 g~I~vwD~~tg~~i~~l~gH~-~~V~sl~~sp~dg~~La 781 (1915)
|.|++||..+|+.+..+.... ....-+.|.. +++.++
T Consensus 498 g~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~-~G~~~v 535 (677)
T 1kb0_A 498 GRLVAYHAATGEKLWEAPTGTGVVAAPSTYMV-DGRQYV 535 (677)
T ss_dssp SEEEEEETTTCCEEEEEECSSCCCSCCEEEEE-TTEEEE
T ss_pred CcEEEEECCCCceeeeeeCCCCcccCCEEEEe-CCEEEE
Confidence 999999999999999987443 2223344555 555433
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=98.84 E-value=3e-07 Score=123.00 Aligned_cols=302 Identities=12% Similarity=0.052 Sum_probs=183.0
Q ss_pred CCEEEEEeCCCcEEEEECCCCceEEEeecCCCC----------e-EEEEeccCccCCCcEEEEEeCCCeEEEEecccCcc
Q psy9598 530 NILLAAGTVDKTIRIWNLQTLAPISVLVGHQGI----------I-TGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDID 598 (1915)
Q Consensus 530 g~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~----------V-~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~ 598 (1915)
+..|++++.++.|..+|..+|+.+..+..+... + ..+++ .+..|++++.|+.|..||..+++.
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~------~~g~v~v~~~dg~l~AlDa~TG~~ 143 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV------WKGKVYVGVLDGRLEAIDAKTGQR 143 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE------ETTEEEEECTTSEEEEEETTTCCE
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE------ECCEEEEEccCCEEEEEECCCCCE
Confidence 456777788899999999999999887643321 0 11122 236788899999999999999987
Q ss_pred ccceecc-CccccccccCCCCCceEEEEECCCCcEEEEEe------CCCeEEEEEecCCCCCceeEEec-----------
Q psy9598 599 ISKTVFH-EPVMFNERIRPGNAHILCSSFSPGGLFLATGS------GDHHVRVYKMDGVDSPLGILEVE----------- 660 (1915)
Q Consensus 599 ~~~~~~~-~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs------~Dg~I~IwDl~~~~~~~~i~~l~----------- 660 (1915)
+...... .... ........+. .++ .+++++ .+|.|..||..+. ..+..+.
T Consensus 144 ~W~~~~~~~~~~---~~~~~~sP~v-----~~g-~v~vg~~~~~~~~~g~v~a~D~~tG---~~~W~~~~~~~~p~~~~~ 211 (689)
T 1yiq_A 144 AWSVDTRADHKR---SYTITGAPRV-----VNG-KVVIGNGGAEFGVRGYVTAYDAETG---KEAWRFYTVPGDPKLPPE 211 (689)
T ss_dssp EEEEECCSCTTS---CCBCCSCCEE-----ETT-EEEECCBCTTTCCBCEEEEEETTTC---CEEEEEESSCCCTTSCCC
T ss_pred eeeecCcCCCCC---CccccCCcEE-----ECC-EEEEEeCCCccCCCCEEEEEECCCC---cEEEEecccCCCcccccc
Confidence 6555432 1000 0000001111 144 344443 3688999988433 2222221
Q ss_pred --------------------cCCCCeeEEEEcCCCCEEEEEeCCCc-------------------EEEEEccCCceEEee
Q psy9598 661 --------------------EHSDKVDSIQWSHSHLRFVSGSRDGT-------------------ALIWYYKCSQWRFIR 701 (1915)
Q Consensus 661 --------------------~h~~~V~sl~fspdg~~L~sgs~DG~-------------------I~IWDl~~~~~~~~~ 701 (1915)
++......+++++++.+|+.++.++. |..||..+++.+...
T Consensus 212 ~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~ 291 (689)
T 1yiq_A 212 GKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHY 291 (689)
T ss_dssp SHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEE
T ss_pred cccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEee
Confidence 11111235788898889999988864 999999999865433
Q ss_pred ecccccCCCCccccccccccccEEEEEECCCCC---EEEEEEecCCeEEEEECCCCceEEEeeCCC-CC-----------
Q psy9598 702 LDMNTCLPHTKETSDETNKKIKVTMVAWDASDR---WVITAINFNFQIKIWDAFNGDLVQVLKGHT-NE----------- 766 (1915)
Q Consensus 702 ~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~---~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~-~~----------- 766 (1915)
...... .... .....+....+..+|. .|+.++. +|.|+++|..+|+++....... ..
T Consensus 292 ~~~~~d------~wd~-~~~~~~~l~d~~~~G~~~~~v~~~~~-~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~p 363 (689)
T 1yiq_A 292 QTTPGD------AWDY-TATQHMILAELPIDGKPRKVLMQAPK-NGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRP 363 (689)
T ss_dssp ESSTTC------CSCC-CCCSCEEEEEEEETTEEEEEEEECCT-TSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEE
T ss_pred ecCCcc------cccc-cCCCCcEEEeeccCCcEEEEEEEECC-CCeEEEEECCCCCEeccccccccccccccCccCCCc
Confidence 211000 0000 0111122222223454 5666665 9999999999999885432110 00
Q ss_pred ---------------------------eEEEEEccCCCCEEEEEec----------------------------------
Q psy9598 767 ---------------------------VFVLESHPFDSRVLLSAGH---------------------------------- 785 (1915)
Q Consensus 767 ---------------------------V~sl~~sp~dg~~LaSgs~---------------------------------- 785 (1915)
-..++|+| +..+|+++..
T Consensus 364 i~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp-~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~ 442 (689)
T 1yiq_A 364 ILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNP-DTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEG 442 (689)
T ss_dssp EECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEET-TTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSS
T ss_pred ccchhhccccCCCCeeEeCCCcccccCCCcceECC-CCCEEEEeccccceeeeeccccccccccccccccCccccccCcc
Confidence 01267788 5566665422
Q ss_pred -----------CceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcccccCC-
Q psy9598 786 -----------DGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGGFKRPQNIP- 853 (1915)
Q Consensus 786 -----------DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl~s~~~~~~l~- 853 (1915)
+|.|..||+.+++. +..+.. ...+....++..|.++++++.||.|+.||..+|+.+..+.
T Consensus 443 ~~~~~~~~~~~~g~l~A~D~~tG~~--~W~~~~------~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~ 514 (689)
T 1yiq_A 443 AEGLLEMAKSWSGKLIAWDPVKQQA--AWEVPY------VTIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPA 514 (689)
T ss_dssp HHHHHHHHTTCEEEEEEEETTTTEE--EEEEEE------SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred cccCCCCCCCcceeEEEEECCCCCe--EeEccC------CCCccCccceECCCEEEEECCCCcEEEEECCCCccceeeeC
Confidence 48899999999987 444431 1223334566688899999999999999999998875442
Q ss_pred ------CceeecCCCCeee
Q psy9598 854 ------RELFFHTDYRTLN 866 (1915)
Q Consensus 854 ------~~~~F~~d~~~Lv 866 (1915)
..+.|..|++..+
T Consensus 515 ~~~~~~~p~ty~~~G~qyv 533 (689)
T 1yiq_A 515 ASGVMAAPVTYSVDGEQYV 533 (689)
T ss_dssp SSCCCSCCEEEEETTEEEE
T ss_pred CCCcccCceEEEECCEEEE
Confidence 2466777777554
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=8.9e-06 Score=111.15 Aligned_cols=336 Identities=11% Similarity=0.046 Sum_probs=207.2
Q ss_pred EEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEE-eCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEee
Q psy9598 479 VFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATL-RGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLV 557 (1915)
Q Consensus 479 V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l-~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~ 557 (1915)
|.++..+++|.+.+ |+.++-|..|+..++...... ..+...|.+|....+|.+.+. +.++-|.+||..++.......
T Consensus 175 i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwig-t~~~Gl~~~~~~~~~~~~~~~ 252 (795)
T 4a2l_A 175 IASTLYRQGDQIYI-GTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTRIWVA-TEGAGLFLINPKTKEIKNYLH 252 (795)
T ss_dssp CEEEEEEETTEEEE-EESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTEEEEE-EBSSCEEEEETTTTEEEEECC
T ss_pred eEEEEECCCCCEEE-EECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCCEEEE-ECCCCeEEEeCCCCeEEEeec
Confidence 88999988886554 676656889998887654432 123567999998888876554 444348899988766544322
Q ss_pred c-------CCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCC
Q psy9598 558 G-------HQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGG 630 (1915)
Q Consensus 558 ~-------h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg 630 (1915)
. ....|.++...+. ..|..|+.+ -|.+|+..++.... .. ..+. ....-....|.++....+|
T Consensus 253 ~~~~~~~l~~~~i~~i~~d~~-----g~lWigt~~-Gl~~~~~~~~~~~~-~~-~~~~---~~~~l~~~~i~~i~~D~~g 321 (795)
T 4a2l_A 253 SPSNPKSISSNYIRSLAMDSQ-----NRLWIGTFN-DLNIYHEGTDSFAS-YS-SNPV---ENGSLSQRSVRSIFMDSQG 321 (795)
T ss_dssp CTTCTTSCSCSBEEEEEECTT-----SCEEEEESS-CEEEEETTTTEEEE-EC-CCTT---STTSCSSSCEEEEEECTTS
T ss_pred CCCCccccCCCeEEEEEEcCC-----CCEEEEeCC-hhheEcCCCCeEEE-Ee-cCCC---CCCCCCCCcEEEEEEeCCc
Confidence 2 1356888887763 245555555 48888876653211 10 0000 0011123679999999988
Q ss_pred cEEEEEeCCCeEEEEEecCCCCCceeEEec----cCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccc
Q psy9598 631 LFLATGSGDHHVRVYKMDGVDSPLGILEVE----EHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNT 706 (1915)
Q Consensus 631 ~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~----~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~ 706 (1915)
. |.+|+.++-|.+|+..... ...+.... -....|.+|....+|. |..|+.++-|..|+..++...........
T Consensus 322 ~-lWigt~~~Gl~~~~~~~~~-~~~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~ 398 (795)
T 4a2l_A 322 G-MWLGTYFGGLNYYHPIRNR-FKNIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDE 398 (795)
T ss_dssp C-EEEEESSSCEEEECGGGGS-SEEECCCTTSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEEEECCC---
T ss_pred C-EEEEECCCCeEEeCCCccc-ceEEcCCCCCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCC
Confidence 6 5667777778888863211 11111000 1245699999888876 56678887899999887765432211000
Q ss_pred cCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEee----CCCCCeEEEEEccCCCCEEEE
Q psy9598 707 CLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLK----GHTNEVFVLESHPFDSRVLLS 782 (1915)
Q Consensus 707 ~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~----gH~~~V~sl~~sp~dg~~LaS 782 (1915)
. ........|.+++.+.+|..|.+|+. ++-|.+||..+++...... .+...|.++...+ ++.+.+.
T Consensus 399 -----~---~~~l~~~~v~~i~~d~~g~~lWigt~-~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~lwig 468 (795)
T 4a2l_A 399 -----S---ARGIGSNNIKAVYVDEKKSLVYIGTH-AGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDG-EGNLWLG 468 (795)
T ss_dssp -----------CCSCSCEEEEEEETTTTEEEEEET-TTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECS-SSCEEEE
T ss_pred -----c---ccCCCCccEEEEEEcCCCCEEEEEeC-cCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECC-CCCEEEE
Confidence 0 00012356899999999985555665 6779999998876544322 2345789998887 6775554
Q ss_pred EecCceEEEEECCCCccccceeeeee--ecCCCCcceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc
Q psy9598 783 AGHDGLIIIWDILSSKQRGYKWFHNI--VEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGGFK 847 (1915)
Q Consensus 783 gs~DG~I~IWdl~s~~~~~~~~~~~~--~~~~~~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl~s~~ 847 (1915)
. . +-|.+|+..++.. ..+... ........|.++...++|.+.+.+. +-|.+|+..++.
T Consensus 469 t-~-~Gl~~~~~~~~~~---~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~--~Gl~~~~~~~~~ 528 (795)
T 4a2l_A 469 T-L-SALVRFNPEQRSF---TTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE--EGLSVFKQEGLD 528 (795)
T ss_dssp E-S-SCEEEEETTTTEE---EECCBCTTCCBCCCCCEEEEEECTTCCEEEEES--SCEEEEEEETTE
T ss_pred e-c-CceeEEeCCCCeE---EEccccccccccCCceEEEEEECCCCCEEEEeC--CceEEEeCCCCe
Confidence 4 4 4588899876544 111100 0011235789999999998777655 458888876654
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.80 E-value=2e-10 Score=142.32 Aligned_cols=260 Identities=12% Similarity=-0.055 Sum_probs=141.6
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCcc
Q psy9598 529 RNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPV 608 (1915)
Q Consensus 529 dg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~ 608 (1915)
++..|++|+.|+.|+.||..+|+.+..+.. +.+.+..+.. ++..+++++.||.|..||..++..+....+..+.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~----~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~ 81 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHV----EEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPE 81 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC---------CCEEECTTTCCEEEC-----CCSEECSCCHHH
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEc----CCCEEEEeCCCCEEEEEECCCCceeeeeeccCcc
Confidence 567899999999999999999999988876 4454444443 3467788889999999999888765443322110
Q ss_pred ccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEE
Q psy9598 609 MFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTAL 688 (1915)
Q Consensus 609 ~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~ 688 (1915)
.. ....+ +. .+..|++|+.++.|+.||..+. ..+..+..+. .+.++|++..|++++.||.|.
T Consensus 82 ~~------~~sp~----~~-~~~~v~~g~~dg~v~a~D~~tG---~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~ 143 (369)
T 2hz6_A 82 LV------QASPC----RS-SDGILYMGKKQDIWYVIDLLTG---EKQQTLSSAF----ADSLSPSTSLLYLGRTEYTIT 143 (369)
T ss_dssp HH------TTCSC----C------CCCCEEEEEEEEECCC-----------------------------EEEEEEEEEEE
T ss_pred cc------ccCce----Ee-cCCEEEEEeCCCEEEEEECCCC---cEEEEecCCC----cccccccCCEEEEEecCCEEE
Confidence 00 00111 11 2446778888999999998433 2233333332 234567888999999999999
Q ss_pred EEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCC---CEEEEEEecCCeEEEEECCCCceEEEeeCCCC
Q psy9598 689 IWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASD---RWVITAINFNFQIKIWDAFNGDLVQVLKGHTN 765 (1915)
Q Consensus 689 IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg---~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~ 765 (1915)
.||..+++.+..... . .....+++.+. ..+++++. +|.|+.||..+|+.+..+... .
T Consensus 144 a~d~~tG~~~W~~~~-~-----------------~~~~~~~~~~~~~~~~v~~~~~-dg~v~a~d~~tG~~~W~~~~~-~ 203 (369)
T 2hz6_A 144 MYDTKTRELRWNATY-F-----------------DYAASLPEDDVDYKMSHFVSNG-DGLVVTVDSESGDVLWIQNYA-S 203 (369)
T ss_dssp CCCSSSSSCCCEEEE-E-----------------EECCBCCCCCTTCCCCEEEEET-SCEEEEECTTTCCEEEEEECS-S
T ss_pred EEECCCCCEEEeEec-c-----------------cccCccccCCccccceEEEECC-CCEEEEEECCCCcEEEEecCC-C
Confidence 999998873321110 0 00112222221 45666666 999999999999998887743 3
Q ss_pred CeEE-EEEccCCCCEEEE--EecCceEEEEECCCCc----cccceeeeeeecCCCCcceEEEEEcC--CCCEEEEEeCCC
Q psy9598 766 EVFV-LESHPFDSRVLLS--AGHDGLIIIWDILSSK----QRGYKWFHNIVEGQGEGALFDGKWSP--DGTTCALTDSYG 836 (1915)
Q Consensus 766 ~V~s-l~~sp~dg~~LaS--gs~DG~I~IWdl~s~~----~~~~~~~~~~~~~~~~~~V~~vafSp--dg~~Lasg~~dG 836 (1915)
++.. ..+++ ++.+.+. ...++.++++|..+|+ . +..+. ..+.+. +| .+..|++++.+|
T Consensus 204 pv~~~~~~~~-dg~~~v~~~~~~~~~l~~ld~~tG~~~~~~--~W~~~------~~~~~~----sp~~~~g~lyv~~~~G 270 (369)
T 2hz6_A 204 PVVAFYVWQR-EGLRKVMHINVAVETLRYLTFMSGEVGRIT--KWKYP------FPKETE----AKSKLTPTLYVGKYST 270 (369)
T ss_dssp CEEEEEECTT-SSCEEECCEEEEHHHHHHHHHHHHHHHHHH--TSCCC------CCCHHH----HHHHSEEEECBEECSS
T ss_pred ceEEEEEecC-CceEeccceeecccceeeeehhcCCcccce--eeeec------cCcccc----ccccccceEEEecccC
Confidence 4433 34444 5543211 1124566777776665 3 22211 001111 22 345788888889
Q ss_pred eEEEEeCCC
Q psy9598 837 HLLVYGLGG 845 (1915)
Q Consensus 837 ~I~Iwdl~s 845 (1915)
.|+.++...
T Consensus 271 ~l~al~~~~ 279 (369)
T 2hz6_A 271 SLYASPSMV 279 (369)
T ss_dssp CEECCEEEE
T ss_pred CEEecCccc
Confidence 999888764
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.77 E-value=8.4e-07 Score=118.39 Aligned_cols=308 Identities=10% Similarity=0.015 Sum_probs=184.1
Q ss_pred CCEEEEEECCCcEEEEECCCCcEEEEEeCCCCC----------E-EEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEe
Q psy9598 488 GEVIVTGADDLLIKLWRARDGKLLATLRGCSGE----------I-SDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVL 556 (1915)
Q Consensus 488 g~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~----------I-~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l 556 (1915)
+..|++++.++.|..+|..+|+.+..+...... + ..+++ .+..|+.++.|+.|..+|..+|+.+..+
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 143 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQ 143 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeeee
Confidence 567888888999999999999999988643221 1 11222 3457888889999999999999998877
Q ss_pred ecCCC-CeEEEEeccCccCCCcEEEEEeC------CCeEEEEecccCccccceecc--Ccccc---------cccc----
Q psy9598 557 VGHQG-IITGVNFCPLEVNGFNYLASTST------DGCIGFWKYKLDIDISKTVFH--EPVMF---------NERI---- 614 (1915)
Q Consensus 557 ~~h~~-~V~sl~fsp~~~~d~~~L~sgs~------DgtI~iWDl~~~~~~~~~~~~--~~~~~---------~~~~---- 614 (1915)
..... ....+..+|.- .+..+++++. +|.|..||..++..+...... .+... ....
T Consensus 144 ~~~~~~~~~~~~~~P~v--~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~ 221 (668)
T 1kv9_A 144 QTTDPAKPYSITGAPRV--VKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQ 221 (668)
T ss_dssp ECSCTTSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSC
T ss_pred ccCCCCCcceecCCCEE--ECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccc
Confidence 64211 11111112211 1235555543 589999999999876655431 11100 0000
Q ss_pred ----CCCCCceEEEEECCCCcEEEEEeCCCe-------------------EEEEEecCCCCCceeEEecc--CC------
Q psy9598 615 ----RPGNAHILCSSFSPGGLFLATGSGDHH-------------------VRVYKMDGVDSPLGILEVEE--HS------ 663 (1915)
Q Consensus 615 ----~~~~~~V~~l~fspdg~~Lasgs~Dg~-------------------I~IwDl~~~~~~~~i~~l~~--h~------ 663 (1915)
..+......+++++.+.++++++.++. |..+|..+ ...+..+.. |.
T Consensus 222 ~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~t---G~~~W~~~~~~~~~wd~~~ 298 (668)
T 1kv9_A 222 YWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDT---GKLAWHYQVTPGDSWDFTA 298 (668)
T ss_dssp HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTT---CCEEEEEESSTTCCSCCCC
T ss_pred eeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCC---CceeeEeecCCCccccccC
Confidence 011122235788888888888887764 88888743 333333322 22
Q ss_pred -CCeeEEEEcCCCC---EEEEEeCCCcEEEEEccCCceEEeeeccc----------ccCCCCcccccccc----------
Q psy9598 664 -DKVDSIQWSHSHL---RFVSGSRDGTALIWYYKCSQWRFIRLDMN----------TCLPHTKETSDETN---------- 719 (1915)
Q Consensus 664 -~~V~sl~fspdg~---~L~sgs~DG~I~IWDl~~~~~~~~~~~~~----------~~~~~~~~~~~~~~---------- 719 (1915)
.++....+..+|. .|++++.+|.+.++|..+++.+....... ...+..........
T Consensus 299 ~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~ 378 (668)
T 1kv9_A 299 TQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPF 378 (668)
T ss_dssp CSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTT
T ss_pred CCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCc
Confidence 2222233334665 68899999999999999998653211000 00000000000000
Q ss_pred ccccEEEEEECCCCCEEEEEEe-----------------------------------cCCeEEEEECCCCceEEEeeCCC
Q psy9598 720 KKIKVTMVAWDASDRWVITAIN-----------------------------------FNFQIKIWDAFNGDLVQVLKGHT 764 (1915)
Q Consensus 720 ~~~~V~~va~spdg~~L~t~s~-----------------------------------~Dg~I~vwD~~tg~~i~~l~gH~ 764 (1915)
....-..++++|+...+++... .+|.|..||+.+|+.+..+..+.
T Consensus 379 G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~ 458 (668)
T 1kv9_A 379 GAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPT 458 (668)
T ss_dssp CSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESS
T ss_pred cccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCC
Confidence 0001123677777776665221 13789999999999988776443
Q ss_pred CCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeee
Q psy9598 765 NEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFH 806 (1915)
Q Consensus 765 ~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~ 806 (1915)
. +....+.. .+.+|++|+.||.|++||..+++. +..+.
T Consensus 459 ~-~~~~~~~t-~gg~vf~g~~dg~l~a~d~~tG~~--l~~~~ 496 (668)
T 1kv9_A 459 H-WNGGTLST-AGNLVFQGTAAGQMHAYSADKGEA--LWQFE 496 (668)
T ss_dssp S-CCCCEEEE-TTTEEEEECTTSEEEEEETTTCCE--EEEEE
T ss_pred C-CcCceeEe-CCCEEEEECCcccchhhhhhcChh--heEec
Confidence 2 23233334 568888999999999999999988 65554
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.72 E-value=1.8e-07 Score=119.07 Aligned_cols=286 Identities=8% Similarity=-0.046 Sum_probs=178.2
Q ss_pred EEEEECCCcEEEEECCCCcEEEEEeCC---------------------------------------CCCEEEEEEeC---
Q psy9598 491 IVTGADDLLIKLWRARDGKLLATLRGC---------------------------------------SGEISDIAIDN--- 528 (1915)
Q Consensus 491 LaTGs~Dg~I~IWd~~tg~~~~~l~gH---------------------------------------~~~I~~Lafsp--- 528 (1915)
+.+|+..|.|+|+-+.+++.+..+.-. .+.....++|.
T Consensus 18 f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t~g 97 (595)
T 1fwx_A 18 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG 97 (595)
T ss_dssp EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEETT
T ss_pred EeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCCCC
Confidence 556777888888888887777655210 01122344444
Q ss_pred --CCCEEEEEeC-CCcEEEEECCCCceEEEeec-CCCCeEEEEe-c-cCccCCCcEEEEEe------------------C
Q psy9598 529 --RNILLAAGTV-DKTIRIWNLQTLAPISVLVG-HQGIITGVNF-C-PLEVNGFNYLASTS------------------T 584 (1915)
Q Consensus 529 --dg~~LaSgs~-DgtIrVWDl~tg~~~~~l~~-h~~~V~sl~f-s-p~~~~d~~~L~sgs------------------~ 584 (1915)
||++|+.+.. ++.|.+.|+.+.++...+.- ....+..+++ . |+ +.++++++ .
T Consensus 98 ~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~----~~~v~~~~~~~~p~~~dg~~l~~~~~~ 173 (595)
T 1fwx_A 98 KYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPR----SNYVFCNGEDETPLVNDGTNMEDVANY 173 (595)
T ss_dssp EEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSB----CSEEEEEECSCEESSCSSSSTTCGGGE
T ss_pred CcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCC----CcEEEEecccccccCCCCccccccccc
Confidence 7888877665 55799999999998885542 2345778887 3 63 47777774 3
Q ss_pred CCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCC---------------eEEEEEecC
Q psy9598 585 DGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDH---------------HVRVYKMDG 649 (1915)
Q Consensus 585 DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg---------------~I~IwDl~~ 649 (1915)
++.|.++|..+.....++... +....++++|+|+++++.+.+. .|.++|+..
T Consensus 174 ~~~vtvID~~t~~v~~qI~Vg-------------g~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~ 240 (595)
T 1fwx_A 174 VNVFTAVDADKWEVAWQVLVS-------------GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAE 240 (595)
T ss_dssp EEEEEEEETTTTEEEEEEEES-------------SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHH
T ss_pred CceEEEEECCCCeEEEEEEeC-------------CCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccc
Confidence 468899998877655544432 1234577999999999988753 234444310
Q ss_pred CCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccC--Cce-EEeeecccccCCCCccccccccccccEEE
Q psy9598 650 VDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKC--SQW-RFIRLDMNTCLPHTKETSDETNKKIKVTM 726 (1915)
Q Consensus 650 ~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~V~~ 726 (1915)
. ..+.++|.++.. +.|.|.|..+ +.. .... .......+
T Consensus 241 ------------~------~~~v~~Gk~~~i----~~V~VID~~~~~~~~~~~~I-----------------pvg~~PhG 281 (595)
T 1fwx_A 241 ------------I------EKAIAAGDYQEL----NGVKVVDGRKEASSLFTRYI-----------------PIANNPHG 281 (595)
T ss_dssp ------------H------HHHHHHTCSEEE----TTEEEEECSGGGCCSSEEEE-----------------EEESSCCC
T ss_pred ------------e------eEeccCCCeeEE----CcEEEEeCcccCCceeEEEE-----------------ecCCCceE
Confidence 0 012234554433 5589999887 321 1100 01123456
Q ss_pred EEECCCCCEEEEEEecCCeEEEEECCCCc------------eEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEEC
Q psy9598 727 VAWDASDRWVITAINFNFQIKIWDAFNGD------------LVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDI 794 (1915)
Q Consensus 727 va~spdg~~L~t~s~~Dg~I~vwD~~tg~------------~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl 794 (1915)
+.++|||+++++++..+.+|.++|+.+.+ .+..+.. ......++|+| +|...++..-|+.|.+||+
T Consensus 282 v~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~v-G~gP~h~aF~~-dG~aY~t~~ldsqV~kwdi 359 (595)
T 1fwx_A 282 CNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPEL-GLGPLHTAFDG-RGNAYTSLFLDSQVVKWNI 359 (595)
T ss_dssp EEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBC-CSCEEEEEECT-TSEEEEEETTTTEEEEEEH
T ss_pred EEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCC-CCCcceEEECC-CCeEEEEEecCCcEEEEEh
Confidence 99999999999999879999999998653 3344432 23478899999 8855566677999999999
Q ss_pred CCCc--------cccceeeeeeecCCCCcceEEEEEcCCCCEEEEEeC
Q psy9598 795 LSSK--------QRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDS 834 (1915)
Q Consensus 795 ~s~~--------~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~ 834 (1915)
.... ...+..+.......|...-.++.++|||++|+++..
T Consensus 360 ~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk 407 (595)
T 1fwx_A 360 EDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSK 407 (595)
T ss_dssp HHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEES
T ss_pred hHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCC
Confidence 7721 101233221111011111122356899999999864
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.67 E-value=5e-05 Score=103.49 Aligned_cols=333 Identities=16% Similarity=0.093 Sum_probs=200.2
Q ss_pred CcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEe-------CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCC
Q psy9598 477 SAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLR-------GCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQT 549 (1915)
Q Consensus 477 ~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~-------gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~t 549 (1915)
..|.+|..+++|.+.+ |+.+ -|.+||..++....... .....|.+|....+|.+.+ |+..+-|.+++..+
T Consensus 211 ~~i~~i~~d~~g~lwi-gt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~ 287 (781)
T 3v9f_A 211 NDVRCIYKDTNGNIWI-GTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLWI-ATELNGIMILDLQQ 287 (781)
T ss_dssp SSEEEEEECTTCCEEE-EETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSEEEE-EESSSCEEEEETTC
T ss_pred CceeEEEEcCCCCEEE-EeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCCEEE-EeCCCCeEEECCCC
Confidence 5799999999887655 5555 58899987775443221 1245799999988886544 56545688899877
Q ss_pred CceEEEee--------------cCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccC
Q psy9598 550 LAPISVLV--------------GHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIR 615 (1915)
Q Consensus 550 g~~~~~l~--------------~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~ 615 (1915)
+....... .....|.+|..... ..|..|+.++-|..|+....... ..... +.. .....
T Consensus 288 ~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~-----g~lWigt~~~Gl~~~~~~~~~~~-~~~~~-~~~-~~~~~ 359 (781)
T 3v9f_A 288 NQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSF-----NNIWIGTWGGGINFISNAPPTFH-TWSYS-PTQ-MNESS 359 (781)
T ss_dssp C---------CEEECBCSSTTSBSSSCEEEEEECSS-----CCEEEEEBSSCEEEECSSCCSCE-EEC-----C-CCSSC
T ss_pred CeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCC-----CCEEEEecCCeEEEeCCCCCcce-eeccC-ccc-cccCC
Confidence 65432211 12356888877653 35677777777888887654321 11000 000 00001
Q ss_pred CCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeE-EeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccC
Q psy9598 616 PGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGIL-EVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKC 694 (1915)
Q Consensus 616 ~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~-~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~ 694 (1915)
.....|.+++...+|. |.+|+.++-|.+|+..... ..... ........|.+|...++|. |..|+.++.|.+|+..+
T Consensus 360 l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~-~~~~~~~~~~~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~ 436 (781)
T 3v9f_A 360 LSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGKRV-AIYNKENRELLSNSVLCSLKDSEGN-LWFGTYLGNISYYNTRL 436 (781)
T ss_dssp CSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTEEE-EECC-----CCCSBEEEEEECTTSC-EEEEETTEEEEEECSSS
T ss_pred CCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCCCe-EEEccCCCCCCCcceEEEEECCCCC-EEEEeccCCEEEEcCCC
Confidence 1235699999988876 5566666668888863210 00000 0012346789998887776 55577777788888877
Q ss_pred CceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCC-----CCCeEE
Q psy9598 695 SQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGH-----TNEVFV 769 (1915)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH-----~~~V~s 769 (1915)
+.+...... ......|.++..+++|.+.+. +. +-|.+||..++......... ...|.+
T Consensus 437 ~~~~~~~~~--------------~~~~~~v~~i~~d~~g~lwig-t~--~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 499 (781)
T 3v9f_A 437 KKFQIIELE--------------KNELLDVRVFYEDKNKKIWIG-TH--AGVFVIDLASKKVIHHYDTSNSQLLENFVRS 499 (781)
T ss_dssp CEEEECCST--------------TTCCCCEEEEEECTTSEEEEE-ET--TEEEEEESSSSSCCEEECTTTSSCSCSCEEE
T ss_pred CcEEEeccC--------------CCCCCeEEEEEECCCCCEEEE-EC--CceEEEeCCCCeEEecccCcccccccceeEE
Confidence 764432110 113456889999888875554 33 46889998877654443222 457899
Q ss_pred EEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc
Q psy9598 770 LESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGGFK 847 (1915)
Q Consensus 770 l~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl~s~~ 847 (1915)
+...+ ++.+.+ |+.++-|..|+..++.. ..+.. ..+.....|.++...++|.+.+++. .|.|..|+..++.
T Consensus 500 i~~d~-~g~lWi-gt~~~Gl~~~~~~~~~~---~~~~~-~~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d~~~~~ 570 (781)
T 3v9f_A 500 IAQDS-EGRFWI-GTFGGGVGIYTPDMQLV---RKFNQ-YEGFCSNTINQIYRSSKGQMWLATG-EGLVCFPSARNFD 570 (781)
T ss_dssp EEECT-TCCEEE-EESSSCEEEECTTCCEE---EEECT-TTTCSCSCEEEEEECTTSCEEEEET-TEEEEESCTTTCC
T ss_pred EEEcC-CCCEEE-EEcCCCEEEEeCCCCeE---EEccC-CCCCCCCeeEEEEECCCCCEEEEEC-CCceEEECCCCCc
Confidence 98887 676555 45444477788766543 22221 1122345789999999998766555 6665888876653
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.66 E-value=6.7e-09 Score=128.57 Aligned_cols=262 Identities=9% Similarity=0.013 Sum_probs=144.2
Q ss_pred CCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEE
Q psy9598 487 LGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGV 566 (1915)
Q Consensus 487 dg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl 566 (1915)
++.+|++|+.||.|..||..+|+.+..+.. +.+.+..+..++.++++++.|+.|+.||..+|+.+..+..+.....
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~-- 83 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELV-- 83 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHH--
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccc--
Confidence 478999999999999999999999999886 5666666677888888888999999999999988776654422110
Q ss_pred EeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEE
Q psy9598 567 NFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYK 646 (1915)
Q Consensus 567 ~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwD 646 (1915)
..+|.. ..+..|++|+.++.|..||..++..+...... . ...++|++..|++|+.++.|+.||
T Consensus 84 ~~sp~~-~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~-------------~---~~~~~p~~~~v~~~~~dg~v~a~d 146 (369)
T 2hz6_A 84 QASPCR-SSDGILYMGKKQDIWYVIDLLTGEKQQTLSSA-------------F---ADSLSPSTSLLYLGRTEYTITMYD 146 (369)
T ss_dssp TTCSCC------CCCCEEEEEEEEECCC--------------------------------------EEEEEEEEEEECCC
T ss_pred ccCceE-ecCCEEEEEeCCCEEEEEECCCCcEEEEecCC-------------C---cccccccCCEEEEEecCCEEEEEE
Confidence 111211 02357888899999999999998765544322 1 123456788899999999999999
Q ss_pred ecCCCCCceeEEeccCCCCeeEEEEcCCC---CEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCcccccccccccc
Q psy9598 647 MDGVDSPLGILEVEEHSDKVDSIQWSHSH---LRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIK 723 (1915)
Q Consensus 647 l~~~~~~~~i~~l~~h~~~V~sl~fspdg---~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 723 (1915)
..+....-.. .... ....+++.+. ..+++++.||.|..||..+++.+.... . ....
T Consensus 147 ~~tG~~~W~~-~~~~----~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~-~---------------~~pv 205 (369)
T 2hz6_A 147 TKTRELRWNA-TYFD----YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN-Y---------------ASPV 205 (369)
T ss_dssp SSSSSCCCEE-EEEE----ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE-C---------------SSCE
T ss_pred CCCCCEEEeE-eccc----ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEec-C---------------CCce
Confidence 8543321111 1111 1222333332 467788999999999999887543221 0 0111
Q ss_pred EEEEEECCCCCEEEE--EEecCCeEEEEECCCCc----eEEEeeCCCCCeEEEEEccC-CCCEEEEEecCceEEEEECCC
Q psy9598 724 VTMVAWDASDRWVIT--AINFNFQIKIWDAFNGD----LVQVLKGHTNEVFVLESHPF-DSRVLLSAGHDGLIIIWDILS 796 (1915)
Q Consensus 724 V~~va~spdg~~L~t--~s~~Dg~I~vwD~~tg~----~i~~l~gH~~~V~sl~~sp~-dg~~LaSgs~DG~I~IWdl~s 796 (1915)
+...+++.+|...+. ... ++.++++|..+|+ .+..+... +.+. +|. .+..|+.++.||.|+.++...
T Consensus 206 ~~~~~~~~dg~~~v~~~~~~-~~~l~~ld~~tG~~~~~~~W~~~~~-~~~~----sp~~~~g~lyv~~~~G~l~al~~~~ 279 (369)
T 2hz6_A 206 VAFYVWQREGLRKVMHINVA-VETLRYLTFMSGEVGRITKWKYPFP-KETE----AKSKLTPTLYVGKYSTSLYASPSMV 279 (369)
T ss_dssp EEEEECTTSSCEEECCEEEE-HHHHHHHHHHHHHHHHHHTSCCCCC-CHHH----HHHHSEEEECBEECSSCEECCEEEE
T ss_pred EEEEEecCCceEeccceeec-ccceeeeehhcCCcccceeeeeccC-cccc----ccccccceEEEecccCCEEecCccc
Confidence 233455566643211 111 3456666665665 33333211 1111 121 235678888999999888763
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.64 E-value=7.6e-05 Score=101.70 Aligned_cols=359 Identities=13% Similarity=0.019 Sum_probs=213.7
Q ss_pred CCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEe--------------CCCCCEEEEEEeCCCCEEEEEeCCCc
Q psy9598 476 LSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLR--------------GCSGEISDIAIDNRNILLAAGTVDKT 541 (1915)
Q Consensus 476 ~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~--------------gH~~~I~~Lafspdg~~LaSgs~Dgt 541 (1915)
...|++|..+++|. |..|+..+-|.+++..++....... .....|.+|....+|.+. .|+.++-
T Consensus 257 ~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~lW-igt~~~G 334 (781)
T 3v9f_A 257 SSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNNIW-IGTWGGG 334 (781)
T ss_dssp CCCEEEEEECTTSE-EEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCCEE-EEEBSSC
T ss_pred CceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCCEE-EEecCCe
Confidence 46799999998886 5557775668899987765432211 134579999999988754 4666667
Q ss_pred EEEEECCCCceEEEee---------cCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCcccccc
Q psy9598 542 IRIWNLQTLAPISVLV---------GHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNE 612 (1915)
Q Consensus 542 IrVWDl~tg~~~~~l~---------~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~ 612 (1915)
|..|+..++....... .....|.++...+. ..|..|+.++-|..|+..++.... +..+
T Consensus 335 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~-----g~lWigt~~~Gl~~~~~~~~~~~~---~~~~----- 401 (781)
T 3v9f_A 335 INFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQ-----GKLWIGTDGGGINVFENGKRVAIY---NKEN----- 401 (781)
T ss_dssp EEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTT-----SCEEEEEBSSCEEEEETTEEEEEC---C--------
T ss_pred EEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCC-----CCEEEEeCCCcEEEEECCCCeEEE---ccCC-----
Confidence 8889887655433211 02356888887653 356677766668888876542110 0000
Q ss_pred ccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEec---cCCCCeeEEEEcCCCCEEEEEeCCCcEEE
Q psy9598 613 RIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVE---EHSDKVDSIQWSHSHLRFVSGSRDGTALI 689 (1915)
Q Consensus 613 ~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~---~h~~~V~sl~fspdg~~L~sgs~DG~I~I 689 (1915)
.......|.++...++|. |.+|+.++-|..|+..+. .+..+. .....|.+|...++|. |..|+. +.|.+
T Consensus 402 -~~~~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~----~~~~~~~~~~~~~~v~~i~~d~~g~-lwigt~-~Gl~~ 473 (781)
T 3v9f_A 402 -RELLSNSVLCSLKDSEGN-LWFGTYLGNISYYNTRLK----KFQIIELEKNELLDVRVFYEDKNKK-IWIGTH-AGVFV 473 (781)
T ss_dssp ---CCCSBEEEEEECTTSC-EEEEETTEEEEEECSSSC----EEEECCSTTTCCCCEEEEEECTTSE-EEEEET-TEEEE
T ss_pred -CCCCCcceEEEEECCCCC-EEEEeccCCEEEEcCCCC----cEEEeccCCCCCCeEEEEEECCCCC-EEEEEC-CceEE
Confidence 012236799999988886 455776677888876321 122221 2346799998888776 455555 55888
Q ss_pred EEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeC---CCCC
Q psy9598 690 WYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKG---HTNE 766 (1915)
Q Consensus 690 WDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~g---H~~~ 766 (1915)
||..++.+....... ........|.+++.+++|.+.+.+. ++-|..||..++........ ....
T Consensus 474 ~~~~~~~~~~~~~~~-----------~~~~~~~~i~~i~~d~~g~lWigt~--~~Gl~~~~~~~~~~~~~~~~~~l~~~~ 540 (781)
T 3v9f_A 474 IDLASKKVIHHYDTS-----------NSQLLENFVRSIAQDSEGRFWIGTF--GGGVGIYTPDMQLVRKFNQYEGFCSNT 540 (781)
T ss_dssp EESSSSSCCEEECTT-----------TSSCSCSCEEEEEECTTCCEEEEES--SSCEEEECTTCCEEEEECTTTTCSCSC
T ss_pred EeCCCCeEEecccCc-----------ccccccceeEEEEEcCCCCEEEEEc--CCCEEEEeCCCCeEEEccCCCCCCCCe
Confidence 888876644322100 0011235789999999998766554 34477798876654332211 2346
Q ss_pred eEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q psy9598 767 VFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGGF 846 (1915)
Q Consensus 767 V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl~s~ 846 (1915)
|.+|...+ ++.+.++ +..|.|..||..++.. ..+. ...+-....|.++...++|.+.+++ ..| |..|+..+.
T Consensus 541 i~~i~~d~-~g~lWi~-T~~Glv~~~d~~~~~~---~~~~-~~~gl~~~~i~~i~~d~~g~lW~~t-~~G-l~~~~~~~~ 612 (781)
T 3v9f_A 541 INQIYRSS-KGQMWLA-TGEGLVCFPSARNFDY---QVFQ-RKEGLPNTHIRAISEDKNGNIWAST-NTG-ISCYITSKK 612 (781)
T ss_dssp EEEEEECT-TSCEEEE-ETTEEEEESCTTTCCC---EEEC-GGGTCSCCCCCEEEECSSSCEEEEC-SSC-EEEEETTTT
T ss_pred eEEEEECC-CCCEEEE-ECCCceEEECCCCCcE---EEcc-ccCCCCCceEEEEEECCCCCEEEEc-CCc-eEEEECCCC
Confidence 88998877 6775554 4477668898876643 2222 1122233568889999998866654 444 666666544
Q ss_pred cccc-----cCC------CceeecCCCCeeeecCCCccceeecc
Q psy9598 847 KRPQ-----NIP------RELFFHTDYRTLNRPNGLFEPTYDEV 879 (1915)
Q Consensus 847 ~~~~-----~l~------~~~~F~~d~~~Lv~~~~~~~~v~D~~ 879 (1915)
.... -++ ..++..++++..+....++ .++|..
T Consensus 613 ~~~~~~~~dGl~~~~f~~~~~~~~~~G~l~~g~~~Gl-~~f~p~ 655 (781)
T 3v9f_A 613 CFYTYDHSNNIPQGSFISGCVTKDHNGLIYFGSINGL-CFFNPD 655 (781)
T ss_dssp EEEEECGGGTCCSSCEEEEEEEECTTSCEEEEETTEE-EEECSC
T ss_pred ceEEecccCCccccccccCceEECCCCEEEEECCCce-EEEChh
Confidence 3211 111 1344556777776555443 245543
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=1.7e-05 Score=103.54 Aligned_cols=309 Identities=11% Similarity=0.015 Sum_probs=176.1
Q ss_pred CCEEEEEEC-CCcEEEEEC-CCCcEEEEEeCCCCC-----------EEEEEEeCCCCE----EEEEeCCCcEEEEECCCC
Q psy9598 488 GEVIVTGAD-DLLIKLWRA-RDGKLLATLRGCSGE-----------ISDIAIDNRNIL----LAAGTVDKTIRIWNLQTL 550 (1915)
Q Consensus 488 g~~LaTGs~-Dg~I~IWd~-~tg~~~~~l~gH~~~-----------I~~Lafspdg~~----LaSgs~DgtIrVWDl~tg 550 (1915)
+..|++++. ++.|.-+|. .+|+.+..+...... ...++++|.+.. |+.++.|+.|..+|..+|
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG 141 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG 141 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence 557777777 889999999 999999887643211 123455444444 888888999999999999
Q ss_pred ceEEEeecCCC-CeEEEEeccCccCCCcEEEEEe------CCCeEEEEecccCccccceeccCccccc------------
Q psy9598 551 APISVLVGHQG-IITGVNFCPLEVNGFNYLASTS------TDGCIGFWKYKLDIDISKTVFHEPVMFN------------ 611 (1915)
Q Consensus 551 ~~~~~l~~h~~-~V~sl~fsp~~~~d~~~L~sgs------~DgtI~iWDl~~~~~~~~~~~~~~~~~~------------ 611 (1915)
+.+........ .-..+.-.|.- .+ ..+++++ .+|.|..+|..+++.+.......+....
T Consensus 142 ~~~W~~~~~~~~~~~~~~ssP~v-~~-g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~ 219 (599)
T 1w6s_A 142 ETVWKVENSDIKVGSTLTIAPYV-VK-DKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPH 219 (599)
T ss_dssp CEEEEEECCCGGGTCBCCSCCEE-ET-TEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGG
T ss_pred CEEEeecCCCCCccceeecCCEE-EC-CEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccccccccc
Confidence 99877643220 00011111211 02 3555555 3899999999999876655443221000
Q ss_pred -------------cccCCCCCce-EEEEECCCCcEEEEEeCCC----------------eEEEEEecCCCCCceeEEec-
Q psy9598 612 -------------ERIRPGNAHI-LCSSFSPGGLFLATGSGDH----------------HVRVYKMDGVDSPLGILEVE- 660 (1915)
Q Consensus 612 -------------~~~~~~~~~V-~~l~fspdg~~Lasgs~Dg----------------~I~IwDl~~~~~~~~i~~l~- 660 (1915)
..+......+ ..+++.+...+|+.++.++ .|..+|..+ ...+..+.
T Consensus 220 ~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~T---G~~~W~~q~ 296 (599)
T 1w6s_A 220 YGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADT---GEAKFGYQK 296 (599)
T ss_dssp GCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTT---CCEEEEEES
T ss_pred ccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCC---CceeeEeec
Confidence 0000011111 2456667777777776653 788888743 22333222
Q ss_pred -cCC--------CCeeEEEEc-CCC---CEEEEEeCCCcEEEEEccCCceEEeeeccccc--------CCCCccc-----
Q psy9598 661 -EHS--------DKVDSIQWS-HSH---LRFVSGSRDGTALIWYYKCSQWRFIRLDMNTC--------LPHTKET----- 714 (1915)
Q Consensus 661 -~h~--------~~V~sl~fs-pdg---~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~--------~~~~~~~----- 714 (1915)
.|. .++. +... .+| ..++.++.+|.+.++|..+++.+......... .......
T Consensus 297 ~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~ 375 (599)
T 1w6s_A 297 TPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYG 375 (599)
T ss_dssp STTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGC
T ss_pred CCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccC
Confidence 221 1221 2222 467 46778899999999999999865433211000 0000000
Q ss_pred ----------cccccccccEEEEEECCCCCEEEEEEe--------------------------------------cCCeE
Q psy9598 715 ----------SDETNKKIKVTMVAWDASDRWVITAIN--------------------------------------FNFQI 746 (1915)
Q Consensus 715 ----------~~~~~~~~~V~~va~spdg~~L~t~s~--------------------------------------~Dg~I 746 (1915)
.........-..++++|+..++++... ..|.|
T Consensus 376 ~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l 455 (599)
T 1w6s_A 376 TRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQI 455 (599)
T ss_dssp CCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEE
T ss_pred CCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeE
Confidence 000000011123556666555544311 24789
Q ss_pred EEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeee
Q psy9598 747 KIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFH 806 (1915)
Q Consensus 747 ~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~ 806 (1915)
..||+.+|+.+...... .++.+-.+.. .+.+|+.|+.||.|+.||..+++. +..+.
T Consensus 456 ~A~D~~tG~~~W~~~~~-~~~~~g~~~t-agg~vf~gt~dg~l~A~D~~tG~~--lW~~~ 511 (599)
T 1w6s_A 456 KAYNAITGDYKWEKMER-FAVWGGTMAT-AGDLVFYGTLDGYLKARDSDTGDL--LWKFK 511 (599)
T ss_dssp EEECTTTCCEEEEEEES-SCCCSBCEEE-TTTEEEEECTTSEEEEEETTTCCE--EEEEE
T ss_pred EEEECCCCCEEeEecCC-CCccCcceEe-cCCEEEEECCCCeEEEEECCCCCE--EEEee
Confidence 99999999988776521 1111111122 467788899999999999999998 66554
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.63 E-value=1e-05 Score=99.72 Aligned_cols=242 Identities=12% Similarity=0.052 Sum_probs=150.7
Q ss_pred EEe--CCCCEEEE-EeCCCcEEEEECCCC----ceEEEee------c-CCCCeEEEEeccCccCCCcEEEEEeCC-----
Q psy9598 525 AID--NRNILLAA-GTVDKTIRIWNLQTL----APISVLV------G-HQGIITGVNFCPLEVNGFNYLASTSTD----- 585 (1915)
Q Consensus 525 afs--pdg~~LaS-gs~DgtIrVWDl~tg----~~~~~l~------~-h~~~V~sl~fsp~~~~d~~~L~sgs~D----- 585 (1915)
.++ .++++|+. |..++.|.|+|+.+. +.+.++. . ....-..+..+| ++ +++++..+
T Consensus 88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~p----dG-i~Vs~~g~~~g~~ 162 (462)
T 2ece_A 88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGP----DA-IYISALGNEEGEG 162 (462)
T ss_dssp TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECS----SC-EEEEEEEETTSCS
T ss_pred ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECC----Ce-EEEEcCCCcCCCC
Confidence 346 77777665 456789999999765 5566662 0 111334566677 34 66666555
Q ss_pred -CeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEe-------------------CCCeEEEE
Q psy9598 586 -GCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGS-------------------GDHHVRVY 645 (1915)
Q Consensus 586 -gtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs-------------------~Dg~I~Iw 645 (1915)
|.|.++|..+...+........ .....+.+.|+|+++.+++.. ....|.+|
T Consensus 163 ~g~v~vlD~~T~~v~~~~~~~~~---------~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~ 233 (462)
T 2ece_A 163 PGGILMLDHYSFEPLGKWEIDRG---------DQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFW 233 (462)
T ss_dssp CCEEEEECTTTCCEEEECCSBCT---------TCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEE
T ss_pred CCeEEEEECCCCeEEEEEccCCC---------CccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEE
Confidence 7899999998876554432210 112344688899999888874 36899999
Q ss_pred EecCCCCCceeEEeccC--CCCeeEEEE--cCCCCEEEEEe------CCCcEEEEEccCCceEEeee-cccccCCCCccc
Q psy9598 646 KMDGVDSPLGILEVEEH--SDKVDSIQW--SHSHLRFVSGS------RDGTALIWYYKCSQWRFIRL-DMNTCLPHTKET 714 (1915)
Q Consensus 646 Dl~~~~~~~~i~~l~~h--~~~V~sl~f--spdg~~L~sgs------~DG~I~IWDl~~~~~~~~~~-~~~~~~~~~~~~ 714 (1915)
|+.. ...+.++... ......|.| +|++.++++++ .+++|.+|....+.|..... +...........
T Consensus 234 D~~~---~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp 310 (462)
T 2ece_A 234 DLRK---RKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLP 310 (462)
T ss_dssp ETTT---TEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCC
T ss_pred ECCC---CcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCcccccccc
Confidence 9953 2333333321 123445555 99999887776 56789888877665543321 000000000000
Q ss_pred ---cccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCC---CceEEEeeCCC--------------CCeEEEEEcc
Q psy9598 715 ---SDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFN---GDLVQVLKGHT--------------NEVFVLESHP 774 (1915)
Q Consensus 715 ---~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~t---g~~i~~l~gH~--------------~~V~sl~~sp 774 (1915)
............|.+|+||++|+++....+.|.+||+.. .+++..+.... +.-..++++|
T Consensus 311 ~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSp 390 (462)
T 2ece_A 311 EILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISR 390 (462)
T ss_dssp GGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECT
T ss_pred ccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcC
Confidence 000011245678999999999999998899999999863 35555554221 1247788999
Q ss_pred CCCCEEEEEe
Q psy9598 775 FDSRVLLSAG 784 (1915)
Q Consensus 775 ~dg~~LaSgs 784 (1915)
++++|+++.
T Consensus 391 -DGk~LyVaN 399 (462)
T 2ece_A 391 -DGRRVYVTN 399 (462)
T ss_dssp -TSSEEEEEC
T ss_pred -CCCEEEEEc
Confidence 888888776
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.62 E-value=3.7e-07 Score=110.16 Aligned_cols=267 Identities=12% Similarity=-0.018 Sum_probs=164.9
Q ss_pred CCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEE
Q psy9598 475 HLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPIS 554 (1915)
Q Consensus 475 H~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~ 554 (1915)
+...+.++.+.++|. |+.|+.+ |..||. +|..+..+..+...+....+. +..|..|+.++.|..+|.. +....
T Consensus 58 ~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~~~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~ 130 (330)
T 3hxj_A 58 GEIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRFDTKKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKW 130 (330)
T ss_dssp GGEEEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGSCC-----CCEEEE--TTEEEEECTTSEEEEECTT-SCEEE
T ss_pred CCCcccceEEecCCc-EEEecCc--EEEECC-CCcEEEEEECCCCcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEE
Confidence 345567888887775 4445544 888886 666544443333223333444 4567778888999999998 88777
Q ss_pred EeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEE
Q psy9598 555 VLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLA 634 (1915)
Q Consensus 555 ~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~La 634 (1915)
.+..+...+.++...+. ..|+.++.++.|..||.. +......... ...+.++.+.++|.+.
T Consensus 131 ~~~~~~~~~~~~~~~~~-----g~l~vgt~~~~l~~~d~~-g~~~~~~~~~------------~~~~~~~~~d~~g~l~- 191 (330)
T 3hxj_A 131 RFKTKKAIYATPIVSED-----GTIYVGSNDNYLYAINPD-GTEKWRFKTN------------DAITSAASIGKDGTIY- 191 (330)
T ss_dssp EEECSSCCCSCCEECTT-----SCEEEECTTSEEEEECTT-SCEEEEEECS------------SCCCSCCEECTTCCEE-
T ss_pred EEcCCCceeeeeEEcCC-----CEEEEEcCCCEEEEECCC-CCEeEEEecC------------CCceeeeEEcCCCEEE-
Confidence 77666555666666542 357778888999999987 5433322211 2335566677777644
Q ss_pred EEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccc
Q psy9598 635 TGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKET 714 (1915)
Q Consensus 635 sgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~ 714 (1915)
+|+ +.|..||. . ...+.........+.++.+.++|. |+.++.++.|..++.. +....... ..
T Consensus 192 v~t--~~l~~~d~-~---g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~~-g~~~~~~~-~~--------- 253 (330)
T 3hxj_A 192 FGS--DKVYAINP-D---GTEKWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINPD-GTEKWRFK-TG--------- 253 (330)
T ss_dssp EES--SSEEEECT-T---SCEEEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEECTT-SCEEEEEE-CS---------
T ss_pred EEe--CEEEEECC-C---CcEEEEEccCCcceeceEECCCCe-EEEEcCCCeEEEECCC-CCEeEEee-CC---------
Confidence 444 77888883 2 223344444556688888888875 5566777888888753 33222111 00
Q ss_pred cccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEEC
Q psy9598 715 SDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDI 794 (1915)
Q Consensus 715 ~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl 794 (1915)
...+.++.+..++. |++++. +|.|..+|. +++.+..+......+.++...+ ++. |..|+.+|.|++...
T Consensus 254 ------~~~~~~~~~~~~g~-l~v~t~-~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~-~g~-l~~gt~~G~~~~~~~ 322 (330)
T 3hxj_A 254 ------KRIESSPVIGNTDT-IYFGSY-DGHLYAINP-DGTEKWNFETGSWIIATPVIDE-NGT-IYFGTRNGKFYALFN 322 (330)
T ss_dssp ------SCCCSCCEECTTSC-EEEECT-TCEEEEECT-TSCEEEEEECSSCCCSCCEECT-TCC-EEEECTTSCEEEEEC
T ss_pred ------CCccccceEcCCCe-EEEecC-CCCEEEECC-CCcEEEEEEcCCccccceEEcC-CCE-EEEEcCCCeEEEEec
Confidence 01112244555554 555655 788999996 7887777776666677777766 555 566889999998876
Q ss_pred CC
Q psy9598 795 LS 796 (1915)
Q Consensus 795 ~s 796 (1915)
..
T Consensus 323 ~~ 324 (330)
T 3hxj_A 323 LE 324 (330)
T ss_dssp --
T ss_pred cc
Confidence 54
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.60 E-value=1e-05 Score=99.58 Aligned_cols=243 Identities=10% Similarity=0.059 Sum_probs=150.5
Q ss_pred EEEEc--CCCCEEEEEE-CCCcEEEEECCCC----cEEEEEe-------CCCCCEEEEEEeCCCCEEEEEeCC------C
Q psy9598 481 CVLFD--KLGEVIVTGA-DDLLIKLWRARDG----KLLATLR-------GCSGEISDIAIDNRNILLAAGTVD------K 540 (1915)
Q Consensus 481 ~vafs--pdg~~LaTGs-~Dg~I~IWd~~tg----~~~~~l~-------gH~~~I~~Lafspdg~~LaSgs~D------g 540 (1915)
|..++ .++++|++.+ .++.|.|+|+.+. +++.++. .....-..+.++|+| +++++..+ |
T Consensus 86 ~~~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g 164 (462)
T 2ece_A 86 CPNGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPG 164 (462)
T ss_dssp STTCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCC
T ss_pred ccccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCC
Confidence 33456 7788877654 5689999999766 6777773 111245667889999 77776655 7
Q ss_pred cEEEEECCCCceEEEeecCCC---CeEEEEeccCccCCCcEEEEEe-------------------CCCeEEEEecccCcc
Q psy9598 541 TIRIWNLQTLAPISVLVGHQG---IITGVNFCPLEVNGFNYLASTS-------------------TDGCIGFWKYKLDID 598 (1915)
Q Consensus 541 tIrVWDl~tg~~~~~l~~h~~---~V~sl~fsp~~~~d~~~L~sgs-------------------~DgtI~iWDl~~~~~ 598 (1915)
.|.+.|..+++.+..+....+ .-..+.|+|.. +.+++.. .+.+|.+||+.+++.
T Consensus 165 ~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~----~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~ 240 (462)
T 2ece_A 165 GILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPN----EVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKR 240 (462)
T ss_dssp EEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTT----TEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEE
T ss_pred eEEEEECCCCeEEEEEccCCCCccccceEEECCCC----CEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcE
Confidence 899999999999998863222 23457788844 7777774 368999999998754
Q ss_pred ccceeccCccccccccCCCCCceEEEEE--CCCCcEEEEEe------CCCeEEEEEecCCCCCceeEE--eccC------
Q psy9598 599 ISKTVFHEPVMFNERIRPGNAHILCSSF--SPGGLFLATGS------GDHHVRVYKMDGVDSPLGILE--VEEH------ 662 (1915)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~V~~l~f--spdg~~Lasgs------~Dg~I~IwDl~~~~~~~~i~~--l~~h------ 662 (1915)
+..+.... .......+.| +|+|+++++++ .+++|.+|..+. ........ +...
T Consensus 241 ~~tI~vg~----------~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~-g~~~~~~vIdi~~~~v~~~l 309 (462)
T 2ece_A 241 IHSLTLGE----------ENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYED-GKWNAEKVIEIPAEPLEGNL 309 (462)
T ss_dssp EEEEESCT----------TEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEET-TEEEEEEEEEECCEECCSSC
T ss_pred eeEEecCC----------CCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecC-CceeEEEEEeCCCccccccc
Confidence 44433320 0122344544 99999888777 466888777643 21111111 1110
Q ss_pred ----------CCCeeEEEEcCCCCEEEEEeC-CCcEEEEEccCC-ceEEee-ecccccCCCCccccccccccccEEEEEE
Q psy9598 663 ----------SDKVDSIQWSHSHLRFVSGSR-DGTALIWYYKCS-QWRFIR-LDMNTCLPHTKETSDETNKKIKVTMVAW 729 (1915)
Q Consensus 663 ----------~~~V~sl~fspdg~~L~sgs~-DG~I~IWDl~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~V~~va~ 729 (1915)
......|.++++|++|+++.. .+.|.+||+... ....+. ............. ........-..+++
T Consensus 310 p~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~-~G~~~~ggPr~~~l 388 (462)
T 2ece_A 310 PEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHP-AGHKLTGAPQMLEI 388 (462)
T ss_dssp CGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCT-TSCCCCSCCCCEEE
T ss_pred cccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeecccccc-ccccCCCCCCEEEE
Confidence 245788999999998877664 689999998633 211111 1111000000000 00001123467899
Q ss_pred CCCCCEEEEEE
Q psy9598 730 DASDRWVITAI 740 (1915)
Q Consensus 730 spdg~~L~t~s 740 (1915)
+++|++|+++.
T Consensus 389 SpDGk~LyVaN 399 (462)
T 2ece_A 389 SRDGRRVYVTN 399 (462)
T ss_dssp CTTSSEEEEEC
T ss_pred cCCCCEEEEEc
Confidence 99999999986
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=98.57 E-value=2.9e-05 Score=101.61 Aligned_cols=328 Identities=15% Similarity=0.045 Sum_probs=181.7
Q ss_pred CCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCE---------EEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeec
Q psy9598 488 GEVIVTGADDLLIKLWRARDGKLLATLRGCSGEI---------SDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVG 558 (1915)
Q Consensus 488 g~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I---------~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~ 558 (1915)
+..|++++.++.|..+|..+|+.+..+....... ..+++ .+..|+.++.|+.|..+|..+|+.+.....
T Consensus 68 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~ 145 (582)
T 1flg_A 68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGKVVWKKKF 145 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCCEEEEEEC
T ss_pred CCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE--ECCEEEEEeCCCEEEEEECCCCCEEeeecC
Confidence 4566666664459999999999998886443210 11222 345788888999999999999999877654
Q ss_pred CCC----CeE-EEEeccCccCCCc-EEEEEeC------CCeEEEEecccCccccceeccCccc--------------cc-
Q psy9598 559 HQG----IIT-GVNFCPLEVNGFN-YLASTST------DGCIGFWKYKLDIDISKTVFHEPVM--------------FN- 611 (1915)
Q Consensus 559 h~~----~V~-sl~fsp~~~~d~~-~L~sgs~------DgtI~iWDl~~~~~~~~~~~~~~~~--------------~~- 611 (1915)
... .+. +..+.... .++. .+++++. +|.|..+|..+++.+.......... ..
T Consensus 146 ~~~~~~~~~~~sP~v~~~~-~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~ 224 (582)
T 1flg_A 146 ADHGAGYTMTGAPTIVKDG-KTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAP 224 (582)
T ss_dssp SCGGGTCBCCSCCEEEECT-TTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCT
T ss_pred CCCCcCcccccCCEEeCCC-cCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccccc
Confidence 321 111 11111110 0122 5666653 7899999999987765443210000 00
Q ss_pred --------------cccCCCCCceEEEEECCCCcEEEEEeC--------------------C----CeEEEEEecCCCCC
Q psy9598 612 --------------ERIRPGNAHILCSSFSPGGLFLATGSG--------------------D----HHVRVYKMDGVDSP 653 (1915)
Q Consensus 612 --------------~~~~~~~~~V~~l~fspdg~~Lasgs~--------------------D----g~I~IwDl~~~~~~ 653 (1915)
.....+...-..+++++...+|+++.. | +.|..+|..+ .
T Consensus 225 ~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~T---G 301 (582)
T 1flg_A 225 SWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSS---G 301 (582)
T ss_dssp TSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTT---C
T ss_pred cCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCC---C
Confidence 000001111124677777777776663 2 5788888743 2
Q ss_pred ceeEEec--cCC--------CCeeEEEEc-CCCC---EEEEEeCCCcEEEEEccCCceEEeeeccccc-----C---CCC
Q psy9598 654 LGILEVE--EHS--------DKVDSIQWS-HSHL---RFVSGSRDGTALIWYYKCSQWRFIRLDMNTC-----L---PHT 711 (1915)
Q Consensus 654 ~~i~~l~--~h~--------~~V~sl~fs-pdg~---~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~-----~---~~~ 711 (1915)
..+..+. .|. .++. +... .+|. .|+.++.+|.++++|..+++.+......... . ...
T Consensus 302 ~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~ 380 (582)
T 1flg_A 302 EVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGR 380 (582)
T ss_dssp CEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCC
T ss_pred CEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCC
Confidence 3333332 232 1221 1221 4674 7888999999999999999865432211000 0 000
Q ss_pred ccc----c---------------cccc--ccccEEEEEECCCCCEEEEEEe-----------------------------
Q psy9598 712 KET----S---------------DETN--KKIKVTMVAWDASDRWVITAIN----------------------------- 741 (1915)
Q Consensus 712 ~~~----~---------------~~~~--~~~~V~~va~spdg~~L~t~s~----------------------------- 741 (1915)
... . .... .......++++|+...+++...
T Consensus 381 p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~ 460 (582)
T 1flg_A 381 PVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRM 460 (582)
T ss_dssp EEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEES
T ss_pred EeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCC
Confidence 000 0 0000 0000124566776555554331
Q ss_pred ---cCCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceE
Q psy9598 742 ---FNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALF 818 (1915)
Q Consensus 742 ---~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~ 818 (1915)
.+|.|..||+.+|+.+..+..+. .+..-.... .+.+++.|+.||.|+.||..+++. +..+.. ... ....
T Consensus 461 ~~~~~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~t-agglvf~g~~dg~l~A~D~~tG~~--lW~~~~--~~g--~~a~ 532 (582)
T 1flg_A 461 YDDHVGSLRAMDPVSGKVVWEHKEHL-PLWAGVLAT-AGNLVFTGTGDGYFKAFDAKSGKE--LWKFQT--GSG--IVSP 532 (582)
T ss_dssp CSSCSEEEEEECTTTCCEEEEEEESS-CCCSCCEEE-TTTEEEEECTTSEEEEEETTTCCE--EEEEEC--SSC--CCSC
T ss_pred CCCCcceEEEEECCCCCEEEEecCCC-CCcccceEe-CCCEEEEECCCCcEEEEECCCCCE--EEEecC--CCC--cccC
Confidence 25789999999999887776432 222111122 457788899999999999999998 666551 111 1112
Q ss_pred EEEEcCCCCEEE
Q psy9598 819 DGKWSPDGTTCA 830 (1915)
Q Consensus 819 ~vafSpdg~~La 830 (1915)
-+.|..+|+..+
T Consensus 533 P~~y~~~G~qYv 544 (582)
T 1flg_A 533 PITWEQDGEQYL 544 (582)
T ss_dssp CEEEEETTEEEE
T ss_pred ceEEEECCEEEE
Confidence 255667876433
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=1.1e-05 Score=105.31 Aligned_cols=306 Identities=10% Similarity=0.022 Sum_probs=175.9
Q ss_pred CCEEEEEEC-CCcEEEEEC-CCCcEEEEEeCCCC-C---------E-EEEEEeCCCCEEEEEeCCCcEEEEECCCCceEE
Q psy9598 488 GEVIVTGAD-DLLIKLWRA-RDGKLLATLRGCSG-E---------I-SDIAIDNRNILLAAGTVDKTIRIWNLQTLAPIS 554 (1915)
Q Consensus 488 g~~LaTGs~-Dg~I~IWd~-~tg~~~~~l~gH~~-~---------I-~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~ 554 (1915)
+..|++++. ++.|..+|. .+|+.+..+..... . + ..+++ .+..|+.++.|+.|..+|..+|+.+.
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W 139 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKINW 139 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 556777777 899999999 99999988753321 0 0 11233 35578888889999999999999987
Q ss_pred EeecCCCC-eEEEEeccCccCCCcEEEEEeC------CCeEEEEecccCccccceeccCcccc-----------------
Q psy9598 555 VLVGHQGI-ITGVNFCPLEVNGFNYLASTST------DGCIGFWKYKLDIDISKTVFHEPVMF----------------- 610 (1915)
Q Consensus 555 ~l~~h~~~-V~sl~fsp~~~~d~~~L~sgs~------DgtI~iWDl~~~~~~~~~~~~~~~~~----------------- 610 (1915)
.+...... -..+..+|.- .+ ..+++++. +|.|..+|..+++.+.......+...
T Consensus 140 ~~~~~~~~~~~~~~~~P~v-~~-g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~ 217 (571)
T 2ad6_A 140 EVEVCDPKVGSTLTQAPFV-AK-DTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQF 217 (571)
T ss_dssp EEECCCGGGTCBCCSCCEE-ET-TEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCS
T ss_pred EecCCCCCccceeccCCEE-EC-CEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCccccccccccccc
Confidence 76532100 0011112211 02 45566654 79999999999987665543321100
Q ss_pred ---cc-----c-cCCCCCceEEEEECCCCcEEEEEeCC----------------CeEEEEEecCCCCCceeEEec--cCC
Q psy9598 611 ---NE-----R-IRPGNAHILCSSFSPGGLFLATGSGD----------------HHVRVYKMDGVDSPLGILEVE--EHS 663 (1915)
Q Consensus 611 ---~~-----~-~~~~~~~V~~l~fspdg~~Lasgs~D----------------g~I~IwDl~~~~~~~~i~~l~--~h~ 663 (1915)
.. . ...+......+++.+....|+.++.+ +.|..+|..+ ...+..+. .|.
T Consensus 218 ~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~t---G~~~W~~~~~~~d 294 (571)
T 2ad6_A 218 GLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDT---GMAKWGYQKTPHD 294 (571)
T ss_dssp SHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTT---CCEEEEEESSTTC
T ss_pred ccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCC---CcEEEEecCCCCc
Confidence 00 0 00111111235566665666666532 2578888743 22333332 221
Q ss_pred --------CCeeEEEEcCCCC---EEEEEeCCCcEEEEEccCCceEEeeecccccC---------CCCccc---------
Q psy9598 664 --------DKVDSIQWSHSHL---RFVSGSRDGTALIWYYKCSQWRFIRLDMNTCL---------PHTKET--------- 714 (1915)
Q Consensus 664 --------~~V~sl~fspdg~---~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~---------~~~~~~--------- 714 (1915)
.++. +....+|. .++.++.+|.+.++|..+++.+.... ..... ......
T Consensus 295 ~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~-~~~~~~w~~~~d~~~g~p~~~~~~~~~~~ 372 (571)
T 2ad6_A 295 EWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEK-VDPAVNVFKKVDLKTGTPVRDPEFATRMD 372 (571)
T ss_dssp SSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEE-SSTTCCSEEEECTTTCSEEECGGGCCCTT
T ss_pred ccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeec-ccCCccccccccccCCceecccccCCCCC
Confidence 2221 22224674 57788999999999999998654321 11000 000000
Q ss_pred ------cccccccccEEEEEECCCCCEEEEEEe------------------------------------cCCeEEEEECC
Q psy9598 715 ------SDETNKKIKVTMVAWDASDRWVITAIN------------------------------------FNFQIKIWDAF 752 (1915)
Q Consensus 715 ------~~~~~~~~~V~~va~spdg~~L~t~s~------------------------------------~Dg~I~vwD~~ 752 (1915)
.........-..++++|+...|++... .+|.|..||+.
T Consensus 373 ~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~ 452 (571)
T 2ad6_A 373 HKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLT 452 (571)
T ss_dssp CCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTT
T ss_pred CCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECC
Confidence 000000001134678888777776542 25789999999
Q ss_pred CCceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeee
Q psy9598 753 NGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFH 806 (1915)
Q Consensus 753 tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~ 806 (1915)
+|+.+..+.... .+.+..+.. .+.+++.++.||.|++||..+++. +..+.
T Consensus 453 tG~~~W~~~~~~-~~~~~~~~t-~gg~v~~g~~dg~l~a~D~~tG~~--lw~~~ 502 (571)
T 2ad6_A 453 TGKAKWTKWEKF-AAWGGTLYT-KGGLVWYATLDGYLKALDNKDGKE--LWNFK 502 (571)
T ss_dssp TCCEEEEEEESS-CCCSBCEEE-TTTEEEEECTTSEEEEEETTTCCE--EEEEE
T ss_pred CCCEEEEecCCC-CccceeEEE-CCCEEEEEcCCCeEEEEECCCCCE--EEEEe
Confidence 999888776332 222222222 456777899999999999999998 65554
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.47 E-value=2.8e-06 Score=108.20 Aligned_cols=270 Identities=11% Similarity=-0.000 Sum_probs=174.2
Q ss_pred CCCCEEEEEECC-CcEEEEECCCCcEEEEEeCC-CCCEEEEEE-e-CCCCEEEEEe------------------CCCcEE
Q psy9598 486 KLGEVIVTGADD-LLIKLWRARDGKLLATLRGC-SGEISDIAI-D-NRNILLAAGT------------------VDKTIR 543 (1915)
Q Consensus 486 pdg~~LaTGs~D-g~I~IWd~~tg~~~~~l~gH-~~~I~~Laf-s-pdg~~LaSgs------------------~DgtIr 543 (1915)
+||++|+....+ +.|.+.|+.+.++...+.-. ...+..+++ + |++.++++++ .++.|.
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt 178 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT 178 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence 478888887654 57999999999988855422 245888998 5 8999998885 246899
Q ss_pred EEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCC---------------eEEEEecccCccccceeccCcc
Q psy9598 544 IWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDG---------------CIGFWKYKLDIDISKTVFHEPV 608 (1915)
Q Consensus 544 VWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~Dg---------------tI~iWDl~~~~~~~~~~~~~~~ 608 (1915)
++|..+.+.+..+.--. ....++++|+ +.++++++.+. .|.+.|+....
T Consensus 179 vID~~t~~v~~qI~Vgg-~pd~~~~spd----Gk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~----------- 242 (595)
T 1fwx_A 179 AVDADKWEVAWQVLVSG-NLDNCDADYE----GKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIE----------- 242 (595)
T ss_dssp EEETTTTEEEEEEEESS-CCCCEEECSS----SSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHH-----------
T ss_pred EEECCCCeEEEEEEeCC-CccceEECCC----CCEEEEEecCcccCcchhhccccccceEEEeecccee-----------
Confidence 99999998888776322 4466778884 47888877653 23333322211
Q ss_pred ccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEe-CCCcE
Q psy9598 609 MFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGS-RDGTA 687 (1915)
Q Consensus 609 ~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs-~DG~I 687 (1915)
.+.++|+++.. +.|.|.|.........+..+.. .....++.++|||+++++++ .+.+|
T Consensus 243 ----------------~~v~~Gk~~~i----~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~V 301 (595)
T 1fwx_A 243 ----------------KAIAAGDYQEL----NGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTV 301 (595)
T ss_dssp ----------------HHHHHTCSEEE----TTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBE
T ss_pred ----------------EeccCCCeeEE----CcEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeE
Confidence 11223443333 4599999853111111222322 23567889999999776655 77899
Q ss_pred EEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCC----------CceE
Q psy9598 688 LIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFN----------GDLV 757 (1915)
Q Consensus 688 ~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~t----------g~~i 757 (1915)
.++|+.+..... ...+..................++|+++| +++++...|+.|.+||+.+ .+.+
T Consensus 302 sVid~~~~~~~~-----~~~l~~~~~v~~~v~vG~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi 375 (595)
T 1fwx_A 302 TVLDVTRFDAVF-----YENADPRSAVVAEPELGLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIK 375 (595)
T ss_dssp EEEEGGGHHHHH-----HSCCCGGGGEEECCBCCSCEEEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEE
T ss_pred EEEECccccccc-----ccccCcccceEEEcCCCCCcceEEECCCC-eEEEEEecCCcEEEEEhhHhhhhhcccccceeE
Confidence 999998643100 00000001111122234567889999999 8888888899999999877 5678
Q ss_pred EEeeCCCCCe-----EEEEEccCCCCEEEEEec---Cce----------EEEEECCCCcc
Q psy9598 758 QVLKGHTNEV-----FVLESHPFDSRVLLSAGH---DGL----------IIIWDILSSKQ 799 (1915)
Q Consensus 758 ~~l~gH~~~V-----~sl~~sp~dg~~LaSgs~---DG~----------I~IWdl~s~~~ 799 (1915)
..+..|-.+- .++.++| ||++|+++.. |.. -.|+|+..++.
T Consensus 376 ~kidV~yqpGh~~~~~g~t~~~-DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~m 434 (595)
T 1fwx_A 376 DKLDVHYQPGHLKTVMGETLDA-TNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKM 434 (595)
T ss_dssp EEEECSSCEEEEEETTTTSTTC-CSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSSC
T ss_pred EEeecccccccceeccceEeCC-CCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCcE
Confidence 8887775532 1223567 9999988753 432 27899966554
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.45 E-value=8.9e-05 Score=86.69 Aligned_cols=248 Identities=12% Similarity=0.002 Sum_probs=151.8
Q ss_pred CEEEEEECCCcEEEEECCCCcE-----EEEEeCCCCCEEEEEEeCCCCEEE-EEeCCCcEEEEECCCCceEEEeecCCCC
Q psy9598 489 EVIVTGADDLLIKLWRARDGKL-----LATLRGCSGEISDIAIDNRNILLA-AGTVDKTIRIWNLQTLAPISVLVGHQGI 562 (1915)
Q Consensus 489 ~~LaTGs~Dg~I~IWd~~tg~~-----~~~l~gH~~~I~~Lafspdg~~La-Sgs~DgtIrVWDl~tg~~~~~l~~h~~~ 562 (1915)
.+|+.+.. +.|..+++..... ...+......+.+++|++++..|+ +...++.|.++++.++.....+......
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~ 80 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGS 80 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCC
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCC
Confidence 45555543 4788888765432 111221224578999999765554 4455789999999876554444333356
Q ss_pred eEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeC---C
Q psy9598 563 ITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSG---D 639 (1915)
Q Consensus 563 V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~---D 639 (1915)
..+|++.+.. +.++++....+.|.++++..... ..+ .. ........++++|++..|+.+.. .
T Consensus 81 p~~ia~d~~~---~~lyv~d~~~~~I~~~~~~g~~~-~~~-~~----------~~~~~P~~i~vd~~~g~lyv~~~~~~~ 145 (267)
T 1npe_A 81 PEGIALDHLG---RTIFWTDSQLDRIEVAKMDGTQR-RVL-FD----------TGLVNPRGIVTDPVRGNLYWTDWNRDN 145 (267)
T ss_dssp EEEEEEETTT---TEEEEEETTTTEEEEEETTSCSC-EEE-EC----------SSCSSEEEEEEETTTTEEEEEECCSSS
T ss_pred ccEEEEEecC---CeEEEEECCCCEEEEEEcCCCCE-EEE-EE----------CCCCCccEEEEeeCCCEEEEEECCCCC
Confidence 7899998842 35556666678999999864321 111 11 11145688999996555554443 4
Q ss_pred CeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEE-EEeCCCcEEEEEccCCceEEeeecccccCCCCccccccc
Q psy9598 640 HHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFV-SGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDET 718 (1915)
Q Consensus 640 g~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~-sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~ 718 (1915)
+.|..+++++.. .... ..........|++++++..|+ +....+.|.++++..........
T Consensus 146 ~~I~~~~~dg~~--~~~~-~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~---------------- 206 (267)
T 1npe_A 146 PKIETSHMDGTN--RRIL-AQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLE---------------- 206 (267)
T ss_dssp CEEEEEETTSCC--CEEE-ECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEE----------------
T ss_pred cEEEEEecCCCC--cEEE-EECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEec----------------
Confidence 688888875322 1111 112334678999999876554 45566889999987543221110
Q ss_pred cccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCC-CCeEEEEEcc
Q psy9598 719 NKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHT-NEVFVLESHP 774 (1915)
Q Consensus 719 ~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~-~~V~sl~~sp 774 (1915)
.......+++. +..|+.+....+.|.++|..+++.+..+.... ...+.|++.|
T Consensus 207 -~~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~ 260 (267)
T 1npe_A 207 -GLQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIAL 260 (267)
T ss_dssp -CCCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEEC
T ss_pred -CCCCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEccccccccceeeecC
Confidence 01122345553 56777776657899999999999988886433 2467777777
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.43 E-value=1.2e-05 Score=107.25 Aligned_cols=288 Identities=14% Similarity=0.072 Sum_probs=170.2
Q ss_pred CCEEEEEeCCCcEEEEECCCCceEEEeecCCCCe-----------EEEEeccCccCCCcEEEEEeCCCeEEEEecccCcc
Q psy9598 530 NILLAAGTVDKTIRIWNLQTLAPISVLVGHQGII-----------TGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDID 598 (1915)
Q Consensus 530 g~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V-----------~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~ 598 (1915)
+..|+.++.++.|..+|..+|+.+..+....... ..+++. +..|++++.|+.|..+|..+++.
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~v~v~~~dg~l~alD~~tG~~ 139 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALW------GDKVYVGTLDGRLIALDAKTGKA 139 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEE------BTEEEEECTTSEEEEEETTTCCE
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEEE------CCEEEEEcCCCEEEEEECCCCCE
Confidence 4467777778999999999999988875432210 112221 36788889999999999999987
Q ss_pred ccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeC------CCeEEEEEecCCCCCceeEEecc-----------
Q psy9598 599 ISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSG------DHHVRVYKMDGVDSPLGILEVEE----------- 661 (1915)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~------Dg~I~IwDl~~~~~~~~i~~l~~----------- 661 (1915)
+........... .......+. .++ .|++++. +|.|..||..+. ..+..+..
T Consensus 140 ~W~~~~~~~~~~---~~~~~~P~v-----~~~-~v~vg~~~~~~~~~g~v~a~D~~tG---~~~W~~~~~~~~p~~~~~~ 207 (668)
T 1kv9_A 140 IWSQQTTDPAKP---YSITGAPRV-----VKG-KVIIGNGGAEYGVRGFVSAYDADTG---KLAWRFYTVPGDPALPYEH 207 (668)
T ss_dssp EEEEECSCTTSS---CBCCSCCEE-----ETT-EEEECCBCTTTCCBCEEEEEETTTC---CEEEEEESSCCCTTSCCSS
T ss_pred eeeeccCCCCCc---ceecCCCEE-----ECC-EEEEeCCCCCcCCCCEEEEEECCCC---cEEEEecccCCCCCccccc
Confidence 666544211100 000011111 133 4555443 578888887432 22222211
Q ss_pred --------------------CCCCeeEEEEcCCCCEEEEEeCCCc-------------------EEEEEccCCceEEeee
Q psy9598 662 --------------------HSDKVDSIQWSHSHLRFVSGSRDGT-------------------ALIWYYKCSQWRFIRL 702 (1915)
Q Consensus 662 --------------------h~~~V~sl~fspdg~~L~sgs~DG~-------------------I~IWDl~~~~~~~~~~ 702 (1915)
+......+++.+.+.+++.++.++. |..+|..+++.+....
T Consensus 208 ~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~ 287 (668)
T 1kv9_A 208 PELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQ 287 (668)
T ss_dssp HHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEE
T ss_pred cccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEee
Confidence 1111234688888888888887764 8999999988654332
Q ss_pred cccccCCCCccccccccccccEEEEEECCCCC---EEEEEEecCCeEEEEECCCCceEEEeeCCCC------------Ce
Q psy9598 703 DMNTCLPHTKETSDETNKKIKVTMVAWDASDR---WVITAINFNFQIKIWDAFNGDLVQVLKGHTN------------EV 767 (1915)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~---~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~------------~V 767 (1915)
...... .. ...........+..+|. .|++++. +|.++++|..+|+++..+..... ++
T Consensus 288 ~~~~~~------wd-~~~~~~~~~~d~~~~G~~~~~v~~~~~-~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~ 359 (668)
T 1kv9_A 288 VTPGDS------WD-FTATQQITLAELNIDGKPRKVLMQAPK-NGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPV 359 (668)
T ss_dssp SSTTCC------SC-CCCCSCEEEEEEEETTEEEEEEEECCT-TSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEE
T ss_pred cCCCcc------cc-ccCCCCcEEEEeccCCcEEEEEEEECC-CCEEEEEECCCCCEeccccccccccccccccccCCcc
Confidence 110000 00 00111222222223554 4666665 99999999999998854432210 00
Q ss_pred ------------------------EEEEEccCCCCEEEEE------------------------------------ecCc
Q psy9598 768 ------------------------FVLESHPFDSRVLLSA------------------------------------GHDG 787 (1915)
Q Consensus 768 ------------------------~sl~~sp~dg~~LaSg------------------------------------s~DG 787 (1915)
..++++| +..+++.. ..+|
T Consensus 360 ~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp-~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g 438 (668)
T 1kv9_A 360 EAPGVRYEKEPIVMWPSPFGAHNWHSMSFNP-GTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSG 438 (668)
T ss_dssp ECTTTTCSSSCEEESSCTTCSSCSSCCEEET-TTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEE
T ss_pred ccccccccCCeeEECCCCccccCCCcceECC-CCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccc
Confidence 0156666 44444321 1348
Q ss_pred eEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcccccC
Q psy9598 788 LIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGGFKRPQNI 852 (1915)
Q Consensus 788 ~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl~s~~~~~~l 852 (1915)
.|..||+.+++. +..+.. ...+....+...|.+|++++.+|.|++||..+++.+..+
T Consensus 439 ~l~A~D~~tG~~--~W~~~~------~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~ 495 (668)
T 1kv9_A 439 ALLAWDPVKQKA--AWKVPY------PTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQF 495 (668)
T ss_dssp EEEEEETTTTEE--EEEEEE------SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred eEEEEeCCCCcE--EEEccC------CCCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEe
Confidence 899999999987 444331 122333345557889999999999999999999877554
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.41 E-value=0.0001 Score=86.19 Aligned_cols=252 Identities=13% Similarity=0.043 Sum_probs=152.3
Q ss_pred EEEEEeCCCcEEEEECCCCce-----EEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccC
Q psy9598 532 LLAAGTVDKTIRIWNLQTLAP-----ISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHE 606 (1915)
Q Consensus 532 ~LaSgs~DgtIrVWDl~tg~~-----~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~ 606 (1915)
+|+.+.. +.|+.+++..... ...+......+.+++|.+. ++.++++...++.|..+++.+.... . ...
T Consensus 3 ~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~---~~~ly~~d~~~~~I~~~~~~g~~~~-~-~~~- 75 (267)
T 1npe_A 3 HLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCV---DKVVYWTDISEPSIGRASLHGGEPT-T-IIR- 75 (267)
T ss_dssp EEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETT---TTEEEEEETTTTEEEEEESSSCCCE-E-EEC-
T ss_pred EEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecC---CCEEEEEECCCCEEEEEecCCCCcE-E-EEE-
Confidence 4444443 4788888875432 1122222345678999884 2356666667789999998765321 1 110
Q ss_pred ccccccccCCCCCceEEEEECCCCc-EEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeC--
Q psy9598 607 PVMFNERIRPGNAHILCSSFSPGGL-FLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSR-- 683 (1915)
Q Consensus 607 ~~~~~~~~~~~~~~V~~l~fspdg~-~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~-- 683 (1915)
.......++++++++. ++++....+.|.++++++.. .... ..........+++++++..|+.+..
T Consensus 76 ---------~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~--~~~~-~~~~~~~P~~i~vd~~~g~lyv~~~~~ 143 (267)
T 1npe_A 76 ---------QDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ--RRVL-FDTGLVNPRGIVTDPVRGNLYWTDWNR 143 (267)
T ss_dssp ---------TTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS--CEEE-ECSSCSSEEEEEEETTTTEEEEEECCS
T ss_pred ---------CCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCC--EEEE-EECCCCCccEEEEeeCCCEEEEEECCC
Confidence 1124578999999654 45555567899999985322 1111 2222245789999997665555543
Q ss_pred -CCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeC
Q psy9598 684 -DGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKG 762 (1915)
Q Consensus 684 -DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~g 762 (1915)
.+.|..+++......... .........+++++++..|+.+....+.|.++++........+.+
T Consensus 144 ~~~~I~~~~~dg~~~~~~~----------------~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~ 207 (267)
T 1npe_A 144 DNPKIETSHMDGTNRRILA----------------QDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG 207 (267)
T ss_dssp SSCEEEEEETTSCCCEEEE----------------CTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEEC
T ss_pred CCcEEEEEecCCCCcEEEE----------------ECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecC
Confidence 367877776543211100 011234678999999988888887688999999976544444433
Q ss_pred CCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCC
Q psy9598 763 HTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGT 827 (1915)
Q Consensus 763 H~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~ 827 (1915)
. .....|++. .+.++++....+.|.++|..+++. +..+. .......+.+++.|++.
T Consensus 208 ~-~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~--~~~i~----~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 208 L-QYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKE--MDTFH----PHKQTRLYGITIALSQC 263 (267)
T ss_dssp C-CSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEE--EEEEC----CSSCCCCCCEEEECSCC
T ss_pred C-CCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCc--eEEEc----cccccccceeeecCccC
Confidence 2 334566653 345555555678999999988876 44443 11112366778888765
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=0.0001 Score=96.32 Aligned_cols=289 Identities=13% Similarity=0.015 Sum_probs=164.1
Q ss_pred CCEEEEEeC-CCcEEEEEC-CCCceEEEeecCCC-Ce----------EEEEeccCccCCCcEEEEEeCCCeEEEEecccC
Q psy9598 530 NILLAAGTV-DKTIRIWNL-QTLAPISVLVGHQG-II----------TGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLD 596 (1915)
Q Consensus 530 g~~LaSgs~-DgtIrVWDl-~tg~~~~~l~~h~~-~V----------~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~ 596 (1915)
+..|+.++. ++.|..+|. .+|+.+..+..... .+ ..+++ .+..|++++.|+.|..+|..++
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~v~v~~~dg~l~alD~~tG 135 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY------GAGQIVKKQANGHLLALDAKTG 135 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE------ETTEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE------ECCEEEEEeCCCEEEEEECCCC
Confidence 445666666 788999999 89998877653221 00 11222 2367888889999999999999
Q ss_pred ccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeC------CCeEEEEEecCCCCCceeEEeccCC-------
Q psy9598 597 IDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSG------DHHVRVYKMDGVDSPLGILEVEEHS------- 663 (1915)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~------Dg~I~IwDl~~~~~~~~i~~l~~h~------- 663 (1915)
+.+.......... ........+. .++ .|++++. +|.|..+|..+. ..+..+....
T Consensus 136 ~~~W~~~~~~~~~---~~~~~~~P~v-----~~g-~v~vg~~~~~~~~~g~v~a~D~~tG---~~~W~~~~~~~~~~~~~ 203 (571)
T 2ad6_A 136 KINWEVEVCDPKV---GSTLTQAPFV-----AKD-TVLMGCSGAELGVRGAVNAFDLKTG---ELKWRAFATGSDDSVRL 203 (571)
T ss_dssp CEEEEEECCCGGG---TCBCCSCCEE-----ETT-EEEEECBCGGGTCCCEEEEEETTTC---CEEEEEESSSCHHHHTB
T ss_pred CEEEEecCCCCCc---cceeccCCEE-----ECC-EEEEEecCCccCCCCEEEEEECCCC---cEEEEEccCCCcccccc
Confidence 8766554331100 0000111111 134 4555554 788999988432 2222221110
Q ss_pred ------------------------------C-CeeEEEEcCCCCEEEEEeCC----------------CcEEEEEccCCc
Q psy9598 664 ------------------------------D-KVDSIQWSHSHLRFVSGSRD----------------GTALIWYYKCSQ 696 (1915)
Q Consensus 664 ------------------------------~-~V~sl~fspdg~~L~sgs~D----------------G~I~IWDl~~~~ 696 (1915)
. ....+++.+....++.++.+ +.|..+|..+++
T Consensus 204 ~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~ 283 (571)
T 2ad6_A 204 AKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGM 283 (571)
T ss_dssp CTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCC
T ss_pred CcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCc
Confidence 0 01235666666677666542 358899999888
Q ss_pred eEEeeecccccCCCCccccccccccccEEEEEECCCCC---EEEEEEecCCeEEEEECCCCceEEEeeCCC---------
Q psy9598 697 WRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDR---WVITAINFNFQIKIWDAFNGDLVQVLKGHT--------- 764 (1915)
Q Consensus 697 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~---~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~--------- 764 (1915)
.+.......... .........+. +....+|+ .++.++. +|.++++|..+|+.+..+....
T Consensus 284 ~~W~~~~~~~d~------~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~-~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d 355 (571)
T 2ad6_A 284 AKWGYQKTPHDE------WDFAGVNQMVL-TDQPVNGKMTPLLSHIDR-NGILYTLNRENGNLIVAEKVDPAVNVFKKVD 355 (571)
T ss_dssp EEEEEESSTTCS------SCCCCCCCCEE-EEEEETTEEEEEEEEECT-TSEEEEEETTTCCEEEEEESSTTCCSEEEEC
T ss_pred EEEEecCCCCcc------cccccCCCCEE-EecccCCcEEEEEEEeCC-CcEEEEEECCCCCEEeeecccCCcccccccc
Confidence 554332110000 00000112221 22224664 4555555 8999999999999887765221
Q ss_pred ----CCe--------------------------EEEEEccCCCCEEEEEe------------------------------
Q psy9598 765 ----NEV--------------------------FVLESHPFDSRVLLSAG------------------------------ 784 (1915)
Q Consensus 765 ----~~V--------------------------~sl~~sp~dg~~LaSgs------------------------------ 784 (1915)
.+| ..++++| +..+|++..
T Consensus 356 ~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp-~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~ 434 (571)
T 2ad6_A 356 LKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDP-ESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPG 434 (571)
T ss_dssp TTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEET-TTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEEC
T ss_pred ccCCceecccccCCCCCCCceEECCCCccccCCCCceECC-CCCEEEEEchhccccccccccccccCCccccccceeccC
Confidence 111 1346777 445555443
Q ss_pred -------cCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcccccCC
Q psy9598 785 -------HDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGGFKRPQNIP 853 (1915)
Q Consensus 785 -------~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl~s~~~~~~l~ 853 (1915)
.+|.|..||+.+++. +..+.. ...+....+...+.++++++.+|.|+.||..+++.+..+.
T Consensus 435 ~~~~~~~~~g~l~a~D~~tG~~--~W~~~~------~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~ 502 (571)
T 2ad6_A 435 PNGPTKKEMGQIRAFDLTTGKA--KWTKWE------KFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFK 502 (571)
T ss_dssp TTSTTSCCCEEEEEECTTTCCE--EEEEEE------SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred ccccCCCCCCeEEEEECCCCCE--EEEecC------CCCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEe
Confidence 358899999999887 444431 1122222233356778889999999999999998775543
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=0.00023 Score=82.72 Aligned_cols=209 Identities=11% Similarity=-0.059 Sum_probs=133.0
Q ss_pred eeeEEecCCCC--cEEEEEEcCCCCEEEEEEC--CCcEEEEECCCCcEEEEEeCCC-CCEEEEEEeCCCCEE-EEEeCCC
Q psy9598 467 RQHYVNLGHLS--AVFCVLFDKLGEVIVTGAD--DLLIKLWRARDGKLLATLRGCS-GEISDIAIDNRNILL-AAGTVDK 540 (1915)
Q Consensus 467 ~~~~~l~gH~~--~V~~vafspdg~~LaTGs~--Dg~I~IWd~~tg~~~~~l~gH~-~~I~~Lafspdg~~L-aSgs~Dg 540 (1915)
+.+.++ .|.. ....++|+++|.++++.+. ++.|.++|+.+++.+.++.-.. .....+++. +..| ++...++
T Consensus 10 ~vv~~~-p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~ 86 (266)
T 2iwa_A 10 EVLNEF-PHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKN 86 (266)
T ss_dssp EEEEEE-ECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCS
T ss_pred eEEEEE-ECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCC
Confidence 344444 3443 3679999998755554443 5799999999999998875222 122345555 4445 4445688
Q ss_pred cEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCc
Q psy9598 541 TIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAH 620 (1915)
Q Consensus 541 tIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (1915)
.|.++|..+++.+..+......-+. ++++ +..|+++..++.|.++|..+......+....... .-..
T Consensus 87 ~v~viD~~t~~v~~~i~~g~~~g~g--lt~D----g~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~-------p~~~ 153 (266)
T 2iwa_A 87 IGFIYDRRTLSNIKNFTHQMKDGWG--LATD----GKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGH-------RVIR 153 (266)
T ss_dssp EEEEEETTTTEEEEEEECCSSSCCE--EEEC----SSSEEEECSSSEEEEECTTTCCEEEEEECEETTE-------ECCC
T ss_pred EEEEEECCCCcEEEEEECCCCCeEE--EEEC----CCEEEEECCCCeEEEEECCCCcEEEEEEECCCCc-------cccc
Confidence 9999999999999888532121123 4442 3555555678899999998876555544331000 0123
Q ss_pred eEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEec--cC-----------CCCeeEEEEcCCCCE-EEEEeCCCc
Q psy9598 621 ILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVE--EH-----------SDKVDSIQWSHSHLR-FVSGSRDGT 686 (1915)
Q Consensus 621 V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~--~h-----------~~~V~sl~fspdg~~-L~sgs~DG~ 686 (1915)
++.+.|. +|...+....++.|.+.|..+. ..+..+. +. ......|+|++++.. |+++...+.
T Consensus 154 ~nele~~-dg~lyvn~~~~~~V~vID~~tg---~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~ 229 (266)
T 2iwa_A 154 LNELEYI-NGEVWANIWQTDCIARISAKDG---TLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPK 229 (266)
T ss_dssp EEEEEEE-TTEEEEEETTSSEEEEEETTTC---CEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSE
T ss_pred ceeEEEE-CCEEEEecCCCCeEEEEECCCC---cEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCe
Confidence 5677777 6765555556789999998433 3333332 11 135689999999875 556667888
Q ss_pred EEEEEccCC
Q psy9598 687 ALIWYYKCS 695 (1915)
Q Consensus 687 I~IWDl~~~ 695 (1915)
|.+.++...
T Consensus 230 v~~i~l~~~ 238 (266)
T 2iwa_A 230 LFEIKLHLV 238 (266)
T ss_dssp EEEEEEEEC
T ss_pred EEEEEEecc
Confidence 888887653
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.17 E-value=0.001 Score=79.52 Aligned_cols=248 Identities=13% Similarity=0.034 Sum_probs=144.5
Q ss_pred eeeEEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCC--cEEE
Q psy9598 467 RQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDK--TIRI 544 (1915)
Q Consensus 467 ~~~~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~Dg--tIrV 544 (1915)
+....+..+ .....++|+++|+++++-..++.|..||... .....+. ....+.+|+++++|+++++..... .|..
T Consensus 23 ~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~ 99 (306)
T 2p4o_A 23 KIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVS 99 (306)
T ss_dssp EEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred eEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCC-ceEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEE
Confidence 344444332 5678999999999777777889999999865 4443333 235689999999999777664432 4667
Q ss_pred EECCCCceEEEeec-CCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEE
Q psy9598 545 WNLQTLAPISVLVG-HQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILC 623 (1915)
Q Consensus 545 WDl~tg~~~~~l~~-h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~ 623 (1915)
++..++........ .......+++.+ ++..+++...++.|.++|..++....... . ...........-.....
T Consensus 100 ~d~~~g~~~~~~~~~~~~~~~g~~~~~----~~~~~v~d~~~g~i~~~d~~~~~~~v~~~-~-~~~~~~~~~~~~~~png 173 (306)
T 2p4o_A 100 LVKSDGTVETLLTLPDAIFLNGITPLS----DTQYLTADSYRGAIWLIDVVQPSGSIWLE-H-PMLARSNSESVFPAANG 173 (306)
T ss_dssp EECTTSCEEEEEECTTCSCEEEEEESS----SSEEEEEETTTTEEEEEETTTTEEEEEEE-C-GGGSCSSTTCCSCSEEE
T ss_pred EcCCCCeEEEEEeCCCccccCcccccC----CCcEEEEECCCCeEEEEeCCCCcEeEEEE-C-CccccccccCCCCcCCC
Confidence 78777775433221 222334555443 23455555568888888876532100000 0 00000000011123444
Q ss_pred EEECCCCcEEE-EEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeee
Q psy9598 624 SSFSPGGLFLA-TGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRL 702 (1915)
Q Consensus 624 l~fspdg~~La-sgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~ 702 (1915)
+ ++++.+|+ +-...+.|.+|++...........+.. ......|+++++|.++++....+.|.+++.. +....+.
T Consensus 174 i--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~- 248 (306)
T 2p4o_A 174 L--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIA- 248 (306)
T ss_dssp E--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEE-
T ss_pred c--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEe-
Confidence 5 77776554 455678999999853211111111111 1346778999999887777778899999865 4322110
Q ss_pred cccccCCCCccccccccccccEEEEEEC---CCCCEEEEEEe
Q psy9598 703 DMNTCLPHTKETSDETNKKIKVTMVAWD---ASDRWVITAIN 741 (1915)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~V~~va~s---pdg~~L~t~s~ 741 (1915)
. ........++++|. +++..|+++..
T Consensus 249 ~-------------~~~~~~~p~~~a~~g~~~d~~~LyVt~~ 277 (306)
T 2p4o_A 249 Q-------------AEQGVIGSTAVAFGQTEGDCTAIYVVTN 277 (306)
T ss_dssp C-------------GGGTCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred e-------------cccccCCceEEEEecccCCCCEEEEECC
Confidence 0 00112457889998 88888887765
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=0.00049 Score=82.86 Aligned_cols=244 Identities=10% Similarity=-0.031 Sum_probs=140.9
Q ss_pred ecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeC--------------------CCCCEEEEEEeC-CC
Q psy9598 472 NLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRG--------------------CSGEISDIAIDN-RN 530 (1915)
Q Consensus 472 l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~g--------------------H~~~I~~Lafsp-dg 530 (1915)
+.|......+++|+++|.+|+++..++.|..|+..++.... +.. ....+..|++.+ ++
T Consensus 14 ~~g~~~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g 92 (322)
T 2fp8_A 14 IEAPSYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVD-FAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNN 92 (322)
T ss_dssp EECSSSCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEE-EEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTT
T ss_pred cCCccCCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEE-EecccccccccccccccchhccccCCCCceEEEcCCCC
Confidence 33433456678899999988889899999999987765432 221 013578999998 66
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEeec-----CCCCeEEEEecc-CccCCCcEEEEEeC-----------------CCe
Q psy9598 531 ILLAAGTVDKTIRIWNLQTLAPISVLVG-----HQGIITGVNFCP-LEVNGFNYLASTST-----------------DGC 587 (1915)
Q Consensus 531 ~~LaSgs~DgtIrVWDl~tg~~~~~l~~-----h~~~V~sl~fsp-~~~~d~~~L~sgs~-----------------Dgt 587 (1915)
.++ .+...+.|.++|..++... .+.. .......+++.+ .+ .+.++... +|.
T Consensus 93 ~l~-v~d~~~~i~~~d~~~g~~~-~~~~~~~~~~~~~p~~i~~d~~~G----~l~v~d~~~~~~~~~~~~~~~~~~~~g~ 166 (322)
T 2fp8_A 93 QLY-IVDCYYHLSVVGSEGGHAT-QLATSVDGVPFKWLYAVTVDQRTG----IVYFTDVSTLYDDRGVQQIMDTSDKTGR 166 (322)
T ss_dssp EEE-EEETTTEEEEECTTCEECE-EEESEETTEECSCEEEEEECTTTC----CEEEEESCSSCCTTCHHHHHHHTCCCEE
T ss_pred cEE-EEECCCCEEEEeCCCCEEE-EecccCCCCcccccceEEEecCCC----EEEEECCcccccccccceehcccCCCce
Confidence 544 4444455888888765432 2211 113467788877 43 45554322 366
Q ss_pred EEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEE-eCCCeEEEEEecCCCCCceeEEeccCCCCe
Q psy9598 588 IGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATG-SGDHHVRVYKMDGVDSPLGILEVEEHSDKV 666 (1915)
Q Consensus 588 I~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasg-s~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V 666 (1915)
|..||..++..... .. .......++|+++|.+|+++ +..+.|.+|++.+..... ...+....+ .
T Consensus 167 v~~~d~~~~~~~~~--~~-----------~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~-~~~~~~~~g-P 231 (322)
T 2fp8_A 167 LIKYDPSTKETTLL--LK-----------ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGT-AEVLVKIPN-P 231 (322)
T ss_dssp EEEEETTTTEEEEE--EE-----------EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTC-EEEEEECSS-E
T ss_pred EEEEeCCCCEEEEe--cc-----------CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCc-cceEEeCCC-C
Confidence 77777655432110 00 01234578999999866555 556899999985422111 111111223 7
Q ss_pred eEEEEcCCCCEEEEEeC----------CCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEE
Q psy9598 667 DSIQWSHSHLRFVSGSR----------DGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWV 736 (1915)
Q Consensus 667 ~sl~fspdg~~L~sgs~----------DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L 736 (1915)
..|++.++|.++++... .+.|..+|.. ++......... . .....++++++. ++ .|
T Consensus 232 ~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~----g--------~~~~~~~~~~~~-~g-~L 296 (322)
T 2fp8_A 232 GNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPP----P--------FAGEHFEQIQEH-DG-LL 296 (322)
T ss_dssp EEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCT----T--------TTTSCCCEEEEE-TT-EE
T ss_pred CCeEECCCCCEEEEecCcccccccCCCccEEEEECCC-CCEEEEEECCC----C--------CccccceEEEEe-CC-EE
Confidence 88999999987666544 4667777764 33222111000 0 001234455552 44 45
Q ss_pred EEEEecCCeEEEEECC
Q psy9598 737 ITAINFNFQIKIWDAF 752 (1915)
Q Consensus 737 ~t~s~~Dg~I~vwD~~ 752 (1915)
++++...+.|.++++.
T Consensus 297 ~v~~~~~~~i~~~~~~ 312 (322)
T 2fp8_A 297 YIGTLFHGSVGILVYD 312 (322)
T ss_dssp EEECSSCSEEEEEEC-
T ss_pred EEeecCCCceEEEecc
Confidence 5554437788888875
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=0.00025 Score=92.59 Aligned_cols=294 Identities=11% Similarity=-0.019 Sum_probs=163.1
Q ss_pred CCEEEEEeC-CCcEEEEEC-CCCceEEEeecCCCC-----------eEEEEeccCccCCCcEEEEEeCCCeEEEEecccC
Q psy9598 530 NILLAAGTV-DKTIRIWNL-QTLAPISVLVGHQGI-----------ITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLD 596 (1915)
Q Consensus 530 g~~LaSgs~-DgtIrVWDl-~tg~~~~~l~~h~~~-----------V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~ 596 (1915)
+..|+.++. ++.|.-+|. .+|+.+..+...... ...+++.|........|++++.|+.|..+|..++
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG 141 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG 141 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence 446666676 788999999 899988777543211 1223443311000123888889999999999999
Q ss_pred ccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEe------CCCeEEEEEecCCCCCceeEEeccCC-------
Q psy9598 597 IDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGS------GDHHVRVYKMDGVDSPLGILEVEEHS------- 663 (1915)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs------~Dg~I~IwDl~~~~~~~~i~~l~~h~------- 663 (1915)
+.+.......... ........+. .++ .|++++ .+|.|+.+|..+. ..+..+....
T Consensus 142 ~~~W~~~~~~~~~---~~~~~ssP~v-----~~g-~V~vg~~g~e~g~~g~v~A~D~~TG---~~~W~~~~~~~~~~~~~ 209 (599)
T 1w6s_A 142 ETVWKVENSDIKV---GSTLTIAPYV-----VKD-KVIIGSSGAELGVRGYLTAYDVKTG---EQVWRAYATGPDKDLLL 209 (599)
T ss_dssp CEEEEEECCCGGG---TCBCCSCCEE-----ETT-EEEECCBCGGGTCCCEEEEEETTTC---CEEEEEESSSCHHHHTB
T ss_pred CEEEeecCCCCCc---cceeecCCEE-----ECC-EEEEEecccccCCCCeEEEEECCCC---cEEEEEcCCCCcccccc
Confidence 8766554331100 0000111111 134 455554 3788999988432 2222221110
Q ss_pred ------------------------------CCe-eEEEEcCCCCEEEEEeCC----------------CcEEEEEccCCc
Q psy9598 664 ------------------------------DKV-DSIQWSHSHLRFVSGSRD----------------GTALIWYYKCSQ 696 (1915)
Q Consensus 664 ------------------------------~~V-~sl~fspdg~~L~sgs~D----------------G~I~IWDl~~~~ 696 (1915)
..+ ..+++.+...+++.++.+ +.|..+|..+++
T Consensus 210 ~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~ 289 (599)
T 1w6s_A 210 ASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGE 289 (599)
T ss_dssp CTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCC
T ss_pred ccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCc
Confidence 001 134566777778877765 378899999988
Q ss_pred eEEeeecccccCCCCccccccccccccEEEEEEC-CCCC---EEEEEEecCCeEEEEECCCCceEEEeeCCC--------
Q psy9598 697 WRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWD-ASDR---WVITAINFNFQIKIWDAFNGDLVQVLKGHT-------- 764 (1915)
Q Consensus 697 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~s-pdg~---~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~-------- 764 (1915)
.+.......... .........+. +... .+|+ .++.++. +|.|+++|..+|+++.......
T Consensus 290 ~~W~~q~~~~d~------wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~-~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~ 361 (599)
T 1w6s_A 290 AKFGYQKTPHDE------WDYAGVNVMML-SEQKDKDGKARKLLTHPDR-NGIVYTLDRTDGALVSANKLDDTVNVFKSV 361 (599)
T ss_dssp EEEEEESSTTCS------SCCCCCCCCEE-EEEECTTSCEEEEEEEECT-TSEEEEEETTTCCEEEEEESSTTCCSEEEE
T ss_pred eeeEeecCCCcc------ccccCCCccEE-EeccccCCcEEEEEEEECC-CcEEEEEECCCCCEeecccccCCccccccc
Confidence 654332111000 00001111222 2222 4663 4554555 9999999999999887664211
Q ss_pred -----CCe--------------------------EEEEEccCCCCEEEEE------------------------------
Q psy9598 765 -----NEV--------------------------FVLESHPFDSRVLLSA------------------------------ 783 (1915)
Q Consensus 765 -----~~V--------------------------~sl~~sp~dg~~LaSg------------------------------ 783 (1915)
.++ ..++++| +..+|++.
T Consensus 362 ~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp-~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~ 440 (599)
T 1w6s_A 362 DLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDP-KRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYP 440 (599)
T ss_dssp CTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEET-TTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEE
T ss_pred ccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCC-CCCEEEEeccccceeeecccccccCCcceecccceecc
Confidence 111 1345555 33343332
Q ss_pred ---e------cCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcccccC
Q psy9598 784 ---G------HDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGGFKRPQNI 852 (1915)
Q Consensus 784 ---s------~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl~s~~~~~~l 852 (1915)
+ .+|.|..||+.+++. +-....- .++..-.+...+.+|++++.||.|+.||..+++.+-.+
T Consensus 441 ~p~~~~~~~~~~G~l~A~D~~tG~~--~W~~~~~------~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~ 510 (599)
T 1w6s_A 441 GPKGDRQNYEGLGQIKAYNAITGDY--KWEKMER------FAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKF 510 (599)
T ss_dssp CTTSBTTTTBCCEEEEEECTTTCCE--EEEEEES------SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCcCCcccCCCcCeEEEEECCCCCE--EeEecCC------CCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEe
Confidence 1 357899999998887 4433311 11111112235777888999999999999999877544
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=98.07 E-value=0.063 Score=70.55 Aligned_cols=343 Identities=11% Similarity=-0.010 Sum_probs=194.0
Q ss_pred CCCcEEEEEEcCCCCEEE-EEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEE-EEEeCCCcEEEEECCCCce
Q psy9598 475 HLSAVFCVLFDKLGEVIV-TGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILL-AAGTVDKTIRIWNLQTLAP 552 (1915)
Q Consensus 475 H~~~V~~vafspdg~~La-TGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~L-aSgs~DgtIrVWDl~tg~~ 552 (1915)
....+..|+|++.+..|+ +-..++.|..+++........+.........|++...+..| ++-...+.|.+.++.....
T Consensus 35 ~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~ 114 (628)
T 4a0p_A 35 GVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHR 114 (628)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTC
T ss_pred CCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcE
Confidence 346788999998665655 44557899999987654444444333457789998765544 5555678899999875543
Q ss_pred EEEeecCCCCeEEEEeccCccCCCcEEEEEe--CCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCC
Q psy9598 553 ISVLVGHQGIITGVNFCPLEVNGFNYLASTS--TDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGG 630 (1915)
Q Consensus 553 ~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs--~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg 630 (1915)
...+........+|++.|.. ..|+.+. ..+.|...++...... .+ . ..-.....+++++++
T Consensus 115 ~~l~~~~l~~P~~iavdp~~----G~lY~tD~g~~~~I~r~~~dG~~~~-~l-~-----------~~~~~P~GlalD~~~ 177 (628)
T 4a0p_A 115 QVLVWKDLDSPRALALDPAE----GFMYWTEWGGKPKIDRAAMDGSERT-TL-V-----------PNVGRANGLTIDYAK 177 (628)
T ss_dssp EEEECSSCCCEEEEEEETTT----TEEEEEECSSSCEEEEEETTSCSCE-EE-E-----------CSCSSEEEEEEETTT
T ss_pred EEEEeCCCCCcccEEEccCC----CeEEEeCCCCCCEEEEEeCCCCceE-EE-E-----------CCCCCcceEEEcccc
Confidence 33333444567899999843 3444443 2467777776544311 11 1 122567899999976
Q ss_pred cEEEEE-eCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeec------
Q psy9598 631 LFLATG-SGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLD------ 703 (1915)
Q Consensus 631 ~~Lasg-s~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~------ 703 (1915)
..|..+ ...+.|..+++++... .+ +........+|++.. +..+++-...+.|...|..++........
T Consensus 178 ~~LY~aD~~~~~I~~~d~dG~~~--~v--~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~~~~l~~~~~~p~ 252 (628)
T 4a0p_A 178 RRLYWTDLDTNLIESSNMLGLNR--EV--IADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQNRTIIQGHLDYVM 252 (628)
T ss_dssp TEEEEEETTTTEEEEEETTSCSC--EE--EEECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEEECSCCSCC
T ss_pred CEEEEEECCCCEEEEEcCCCCce--EE--eeccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCCceEEEecCCCCcc
Confidence 555554 4567899999865332 22 223334456777764 44455555567777777544431111000
Q ss_pred ------------cccc-----------------------CCCCccc-------------------------cc-------
Q psy9598 704 ------------MNTC-----------------------LPHTKET-------------------------SD------- 716 (1915)
Q Consensus 704 ------------~~~~-----------------------~~~~~~~-------------------------~~------- 716 (1915)
...| ..+.... ..
T Consensus 253 ~i~v~~~~~q~~~n~C~~~ng~C~~~C~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~Ll~s~~~~i~~i~l~~~~~~~~ 332 (628)
T 4a0p_A 253 DILVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTFLLFSQKSAINRMVIDEQQSPDI 332 (628)
T ss_dssp EEEEECGGGSCCCCTTTTTGGGCSSEEEEETTTEEEEECSTTCEECTTSSCEECCSSEEEEEETTEEEEECCCTTCCCCE
T ss_pred eeeeeeecccccceEeccCCCCcchhhhcCCCCCeeEEcCCCcEecccCCcCccccceeeeeccceEEEEecccccCceE
Confidence 0000 0000000 00
Q ss_pred --cccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeC------CCCCeEEEEEccCCCCEEEEEecCce
Q psy9598 717 --ETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKG------HTNEVFVLESHPFDSRVLLSAGHDGL 788 (1915)
Q Consensus 717 --~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~g------H~~~V~sl~~sp~dg~~LaSgs~DG~ 788 (1915)
.......+..|+|++.+..|+.+....+.|+.+++........+.. ....+..|++....+++.+|-+..+.
T Consensus 333 ~l~~~~~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~ 412 (628)
T 4a0p_A 333 ILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNV 412 (628)
T ss_dssp ECCCTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEEETTTTE
T ss_pred EEEehhcCCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCE
Confidence 0001123455666666666666655456677776653332333322 22357889988744556667777889
Q ss_pred EEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEEeC-CC--eEEEEeCCCC
Q psy9598 789 IIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDS-YG--HLLVYGLGGF 846 (1915)
Q Consensus 789 I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~-dG--~I~Iwdl~s~ 846 (1915)
|.+.++.. .. ...+. ........++++.|...+|..++. .. .|...+++..
T Consensus 413 I~v~~~~G-~~--~~~l~----~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~ 466 (628)
T 4a0p_A 413 INVTRLDG-RS--VGVVL----KGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGT 466 (628)
T ss_dssp EEEEETTS-CE--EEEEE----ECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSC
T ss_pred EEEEECCC-Ce--EEEEE----eCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCC
Confidence 99999864 33 22221 123456889999995444444433 22 5777777654
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=98.07 E-value=3e-05 Score=103.45 Aligned_cols=278 Identities=10% Similarity=-0.012 Sum_probs=151.1
Q ss_pred EEEEcC-CCCEEEEEECCC-----------cEEEEECCCCcE--EEEEe-CCCCCEEEEEEeCCCCEEEEEeC-CCcEEE
Q psy9598 481 CVLFDK-LGEVIVTGADDL-----------LIKLWRARDGKL--LATLR-GCSGEISDIAIDNRNILLAAGTV-DKTIRI 544 (1915)
Q Consensus 481 ~vafsp-dg~~LaTGs~Dg-----------~I~IWd~~tg~~--~~~l~-gH~~~I~~Lafspdg~~LaSgs~-DgtIrV 544 (1915)
++++.+ +|++++.|+.+. .+.+||+.++.. +..+. .+.....++++..++.+++.|+. +..+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 556666 899999988653 588999988753 22332 23334456788899999999984 568999
Q ss_pred EECCCCceEEEeecCCCC-eEEEEeccCccCCCcEEEEEe-CC-----CeEEEEecccCccccceecc-CccccccccCC
Q psy9598 545 WNLQTLAPISVLVGHQGI-ITGVNFCPLEVNGFNYLASTS-TD-----GCIGFWKYKLDIDISKTVFH-EPVMFNERIRP 616 (1915)
Q Consensus 545 WDl~tg~~~~~l~~h~~~-V~sl~fsp~~~~d~~~L~sgs-~D-----gtI~iWDl~~~~~~~~~~~~-~~~~~~~~~~~ 616 (1915)
||..+..-...-..+... -.++++.+ ++.+++.|+ .+ ..+.+||..+.......... .+.. ..
T Consensus 270 yd~~t~~W~~~~~~~~~R~~~s~~~~~----dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~-----~~ 340 (656)
T 1k3i_A 270 YDSSSDSWIPGPDMQVARGYQSSATMS----DGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPML-----TA 340 (656)
T ss_dssp EEGGGTEEEECCCCSSCCSSCEEEECT----TSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGC-----CC
T ss_pred ecCcCCceeECCCCCccccccceEEec----CCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccc-----cc
Confidence 998876433221112111 12344444 447888888 44 46899998776421110000 0000 00
Q ss_pred CCCceEEEEECCCCcEEEEEeCC---------CeEEEEEecCCCCCceeEEecc------CCCCeeEEEEc-CCCCEEEE
Q psy9598 617 GNAHILCSSFSPGGLFLATGSGD---------HHVRVYKMDGVDSPLGILEVEE------HSDKVDSIQWS-HSHLRFVS 680 (1915)
Q Consensus 617 ~~~~V~~l~fspdg~~Lasgs~D---------g~I~IwDl~~~~~~~~i~~l~~------h~~~V~sl~fs-pdg~~L~s 680 (1915)
... ..+..++..++.|+.+ ..+..||............... ....-.++.|. .++.++++
T Consensus 341 ~~~----~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~ 416 (656)
T 1k3i_A 341 DKQ----GLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTF 416 (656)
T ss_dssp CTT----GGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEE
T ss_pred ccc----ceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEE
Confidence 000 1122344444444444 3567788743221111110000 01122344443 36778888
Q ss_pred EeCCC-----------cEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecC------
Q psy9598 681 GSRDG-----------TALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFN------ 743 (1915)
Q Consensus 681 gs~DG-----------~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~D------ 743 (1915)
|+.++ .|.+||..+..|..... ..++ ......++++.++|..+++++...
T Consensus 417 GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~---~~mp----------~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~ 483 (656)
T 1k3i_A 417 GGSPDYQDSDATTNAHIITLGEPGTSPNTVFAS---NGLY----------FARTFHTSVVLPDGSTFITGGQRRGIPFED 483 (656)
T ss_dssp CCBSSSSSSBCCCCEEEEECCSTTSCCEEEECT---TCCS----------SCCBSCEEEECTTSCEEEECCBSBCCTTCC
T ss_pred eCCCCCCCCCcCCcceEEEcCCCCCCCeeEEcc---CCCC----------CCcccCCeEECCCCCEEEECCcccCcCcCC
Confidence 87543 67888888888765320 0000 111123345668999999887521
Q ss_pred ----CeEEEEECCCCceEEE--eeCCCCCeEEEEEccCCCCEEEEEec
Q psy9598 744 ----FQIKIWDAFNGDLVQV--LKGHTNEVFVLESHPFDSRVLLSAGH 785 (1915)
Q Consensus 744 ----g~I~vwD~~tg~~i~~--l~gH~~~V~sl~~sp~dg~~LaSgs~ 785 (1915)
..+.+||..+.+.... +........+..+.| ++++++.||.
T Consensus 484 ~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~-dg~v~v~GG~ 530 (656)
T 1k3i_A 484 STPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLP-DGRVFNGGGG 530 (656)
T ss_dssp CSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECT-TSCEEEEECC
T ss_pred CCcccceEEEcCCCCceeecCCCCCccccccHhhcCC-CcEEEecCCC
Confidence 4689999877653321 111122223444567 8999999985
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=98.07 E-value=0.0019 Score=84.39 Aligned_cols=306 Identities=12% Similarity=-0.008 Sum_probs=166.3
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEeecCCCCe---------EEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccc
Q psy9598 531 ILLAAGTVDKTIRIWNLQTLAPISVLVGHQGII---------TGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISK 601 (1915)
Q Consensus 531 ~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V---------~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~ 601 (1915)
..|+.++.++.|..+|..+|+.+..+....... ..+++. +..|+.++.|+.|..+|..+++.+..
T Consensus 69 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~------~~~v~~~t~dg~l~AlD~~TG~~~W~ 142 (582)
T 1flg_A 69 GVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIY------GDKVFFGTLDASVVALNKNTGKVVWK 142 (582)
T ss_dssp TEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEE------TTEEEEEETTTEEEEEESSSCCEEEE
T ss_pred CEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEE------CCEEEEEeCCCEEEEEECCCCCEEee
Confidence 345555554448889999999888776433210 112221 35788889999999999999987665
Q ss_pred eeccCccccccccCCCCCceEEEEEC-CCCc-EEEEEeC------CCeEEEEEecCCCCCceeEEeccC-----------
Q psy9598 602 TVFHEPVMFNERIRPGNAHILCSSFS-PGGL-FLATGSG------DHHVRVYKMDGVDSPLGILEVEEH----------- 662 (1915)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~V~~l~fs-pdg~-~Lasgs~------Dg~I~IwDl~~~~~~~~i~~l~~h----------- 662 (1915)
........ ........+. .-. .+|+ .|++++. +|.|..+|..+.. .+......
T Consensus 143 ~~~~~~~~---~~~~~~sP~v--~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~---~~W~~~~~~~~~~p~~~~~ 214 (582)
T 1flg_A 143 KKFADHGA---GYTMTGAPTI--VKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGE---EIWMRPFVEGHMGRLNGKD 214 (582)
T ss_dssp EECSCGGG---TCBCCSCCEE--EECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCC---EEEEEESSTTCEEEETTEE
T ss_pred ecCCCCCc---CcccccCCEE--eCCCcCCcEEEEEeccccccCCCCEEEEEECCCCC---EEeecCCCccccccccCcc
Confidence 54432110 0000111111 101 1222 4555542 6778777764322 12111110
Q ss_pred ------------------------------CCCeeEEEEcCCCCEEEEEeC--------------------C----CcEE
Q psy9598 663 ------------------------------SDKVDSIQWSHSHLRFVSGSR--------------------D----GTAL 688 (1915)
Q Consensus 663 ------------------------------~~~V~sl~fspdg~~L~sgs~--------------------D----G~I~ 688 (1915)
...-..+++.+...+++.++. | +.|.
T Consensus 215 ~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~ 294 (582)
T 1flg_A 215 STVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQV 294 (582)
T ss_dssp EEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEE
T ss_pred cccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEE
Confidence 000123566677777776663 2 5799
Q ss_pred EEEccCCceEEeeecccccCCCCccccccccccccEEEEEEC-CCCC---EEEEEEecCCeEEEEECCCCceEEEeeCCC
Q psy9598 689 IWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWD-ASDR---WVITAINFNFQIKIWDAFNGDLVQVLKGHT 764 (1915)
Q Consensus 689 IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~s-pdg~---~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~ 764 (1915)
.+|..+++.+......... ..........+. +... .+|+ .|+.++. +|.|+++|..+|+++..+....
T Consensus 295 AlD~~TG~~~W~~q~~~~d------~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~-~G~l~~lD~~tG~~lw~~~~~~ 366 (582)
T 1flg_A 295 GVDPSSGEVKWFYQHTPND------AWDFSGNNELVL-FDYKAKDGKIVKATAHADR-NGFFYVVDRSNGKLQNAFPFVD 366 (582)
T ss_dssp EECTTTCCEEEEEESSTTC------CSCCCCCCCCEE-EEEECSSSCEEEEEEEECT-TSEEEEEETTTCCEEEEEESSS
T ss_pred EEeCCCCCEEEEEeCCCCC------cccccCCCCcEE-EeeecCCCCEEEEEEEECC-CceEEEEECCCCCEeccccccc
Confidence 9999998865433211000 000001111222 2222 4664 5555655 9999999999999987765432
Q ss_pred C--Ce-------------------------------------------EEEEEccCCCCEEEEEe---------------
Q psy9598 765 N--EV-------------------------------------------FVLESHPFDSRVLLSAG--------------- 784 (1915)
Q Consensus 765 ~--~V-------------------------------------------~sl~~sp~dg~~LaSgs--------------- 784 (1915)
. .. ..++++|..+.+++...
T Consensus 367 ~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~ 446 (582)
T 1flg_A 367 NITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTK 446 (582)
T ss_dssp CCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCT
T ss_pred CccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccC
Confidence 0 00 12345553333333221
Q ss_pred -----------------cCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc
Q psy9598 785 -----------------HDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGGFK 847 (1915)
Q Consensus 785 -----------------~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl~s~~ 847 (1915)
.+|.|..||+.+++. +-.+... ..+........+.++++++.||.|+.||..+++
T Consensus 447 g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~--~W~~~~~------~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~ 518 (582)
T 1flg_A 447 GSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKV--VWEHKEH------LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGK 518 (582)
T ss_dssp TSCCCCEEEEEEESCSSCSEEEEEECTTTCCE--EEEEEES------SCCCSCCEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred CCceeccceeecCCCCCCcceEEEEECCCCCE--EEEecCC------CCCcccceEeCCCEEEEECCCCcEEEEECCCCC
Confidence 368899999999987 4443311 111111122256788889999999999999998
Q ss_pred ccccCCC-------ceeecCCCCeee
Q psy9598 848 RPQNIPR-------ELFFHTDYRTLN 866 (1915)
Q Consensus 848 ~~~~l~~-------~~~F~~d~~~Lv 866 (1915)
.+..+.. .+.|..+++..+
T Consensus 519 ~lW~~~~~~g~~a~P~~y~~~G~qYv 544 (582)
T 1flg_A 519 ELWKFQTGSGIVSPPITWEQDGEQYL 544 (582)
T ss_dssp EEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred EEEEecCCCCcccCceEEEECCEEEE
Confidence 7754422 244555665443
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=0.0008 Score=80.95 Aligned_cols=254 Identities=12% Similarity=0.007 Sum_probs=144.6
Q ss_pred CCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCcccc---c-----cccCCCCCceEEEEECC-CCc
Q psy9598 561 GIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMF---N-----ERIRPGNAHILCSSFSP-GGL 631 (1915)
Q Consensus 561 ~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~---~-----~~~~~~~~~V~~l~fsp-dg~ 631 (1915)
....+++|.+ ++.+++++..++.|..|+..++... .+........ . .........+.++++.+ +|.
T Consensus 19 ~~p~~i~~d~----~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~ 93 (322)
T 2fp8_A 19 YAPNSFTFDS----TNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ 93 (322)
T ss_dssp SCCCCEECCT----TCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE
T ss_pred CCceEEEEcC----CCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCc
Confidence 3456788887 3467888888999999987754321 1111000000 0 00000113578899998 665
Q ss_pred EEEEEeCCCeEEEEEecCCCCCceeEE-ecc-CCCCeeEEEEcC-CCCEEEEEeC-----------------CCcEEEEE
Q psy9598 632 FLATGSGDHHVRVYKMDGVDSPLGILE-VEE-HSDKVDSIQWSH-SHLRFVSGSR-----------------DGTALIWY 691 (1915)
Q Consensus 632 ~Lasgs~Dg~I~IwDl~~~~~~~~i~~-l~~-h~~~V~sl~fsp-dg~~L~sgs~-----------------DG~I~IWD 691 (1915)
|+++...+.|..+|..+.. ...+.. ..+ .......|++.+ +|.++++... +|.|..||
T Consensus 94 -l~v~d~~~~i~~~d~~~g~-~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d 171 (322)
T 2fp8_A 94 -LYIVDCYYHLSVVGSEGGH-ATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYD 171 (322)
T ss_dssp -EEEEETTTEEEEECTTCEE-CEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEE
T ss_pred -EEEEECCCCEEEEeCCCCE-EEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEe
Confidence 4445444557777763211 111111 111 123468899999 8987666432 36688888
Q ss_pred ccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCc--eEEEeeCCCCCeEE
Q psy9598 692 YKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGD--LVQVLKGHTNEVFV 769 (1915)
Q Consensus 692 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~--~i~~l~gH~~~V~s 769 (1915)
..++....... .......++|+++|.+|+++....+.|.+|++.... ....+....+ ...
T Consensus 172 ~~~~~~~~~~~-----------------~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~g 233 (322)
T 2fp8_A 172 PSTKETTLLLK-----------------ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGN 233 (322)
T ss_dssp TTTTEEEEEEE-----------------EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEE
T ss_pred CCCCEEEEecc-----------------CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCC
Confidence 76655322110 012234689999999888776647899999987421 1122211223 778
Q ss_pred EEEccCCCCEEEEEec----------CceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEEeCCCeEE
Q psy9598 770 LESHPFDSRVLLSAGH----------DGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLL 839 (1915)
Q Consensus 770 l~~sp~dg~~LaSgs~----------DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~dG~I~ 839 (1915)
|++.+ +++++++... .+.|.++|.. ++. +..+.. -.+.....+.++++ .++.++++....+.|.
T Consensus 234 i~~d~-~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~--~~~~~~-~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~ 307 (322)
T 2fp8_A 234 IKRNA-DGHFWVSSSEELDGNMHGRVDPKGIKFDEF-GNI--LEVIPL-PPPFAGEHFEQIQE-HDGLLYIGTLFHGSVG 307 (322)
T ss_dssp EEECT-TSCEEEEEEEETTSSTTSCEEEEEEEECTT-SCE--EEEEEC-CTTTTTSCCCEEEE-ETTEEEEECSSCSEEE
T ss_pred eEECC-CCCEEEEecCcccccccCCCccEEEEECCC-CCE--EEEEEC-CCCCccccceEEEE-eCCEEEEeecCCCceE
Confidence 99998 8887776654 4678888864 444 333331 11111245666766 4566666656778899
Q ss_pred EEeCCC
Q psy9598 840 VYGLGG 845 (1915)
Q Consensus 840 Iwdl~s 845 (1915)
++++..
T Consensus 308 ~~~~~~ 313 (322)
T 2fp8_A 308 ILVYDK 313 (322)
T ss_dssp EEEC--
T ss_pred EEeccc
Confidence 998764
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.02 E-value=0.00043 Score=79.59 Aligned_cols=197 Identities=11% Similarity=0.048 Sum_probs=123.0
Q ss_pred eeeeEEecCCCCc--EEEEEEcCCCCEEEEEECCC--cEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEe-CCC
Q psy9598 466 LRQHYVNLGHLSA--VFCVLFDKLGEVIVTGADDL--LIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGT-VDK 540 (1915)
Q Consensus 466 ~~~~~~l~gH~~~--V~~vafspdg~~LaTGs~Dg--~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs-~Dg 540 (1915)
++++.++ -|... ...+.|+ ++.++++++.+| .|+++|+.+|+.+..+.... .+....+.+++..|..+. .++
T Consensus 31 ~~vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~~ly~ltw~~~ 107 (262)
T 3nol_A 31 YQIVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKDKIVGLTWKNG 107 (262)
T ss_dssp EEEEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSS
T ss_pred eEEEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCCEEEEEEeeCC
Confidence 3444455 34333 4678898 677777777766 89999999999999886433 333322233344555444 588
Q ss_pred cEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCc
Q psy9598 541 TIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAH 620 (1915)
Q Consensus 541 tIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (1915)
.+.+||..+++.+.++.... .=+.++ + ++..|+.+..++.|.++|..+...+..+....... .-..
T Consensus 108 ~v~v~D~~t~~~~~ti~~~~-eG~glt--~----dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~-------~~~~ 173 (262)
T 3nol_A 108 LGFVWNIRNLRQVRSFNYDG-EGWGLT--H----NDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGE-------ELPE 173 (262)
T ss_dssp EEEEEETTTCCEEEEEECSS-CCCCEE--E----CSSCEEECCSSSEEEEECTTTCSEEEEEECEETTE-------ECCC
T ss_pred EEEEEECccCcEEEEEECCC-CceEEe--c----CCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCc-------cccc
Confidence 99999999999999887432 113343 3 23556666667889999998887655544321000 0023
Q ss_pred eEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEecc------------CCCCeeEEEEcCCCCEEEEEeC
Q psy9598 621 ILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEE------------HSDKVDSIQWSHSHLRFVSGSR 683 (1915)
Q Consensus 621 V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~------------h~~~V~sl~fspdg~~L~sgs~ 683 (1915)
++.+.|. +|...+....+..|.+.|..+. ..+..+.. -....+.|||+|++..|++.+.
T Consensus 174 lNELe~~-~G~lyan~w~~~~I~vIDp~tG---~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 174 LNELEWV-DGEIFANVWQTNKIVRIDPETG---KVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp EEEEEEE-TTEEEEEETTSSEEEEECTTTC---BEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred cceeEEE-CCEEEEEEccCCeEEEEECCCC---cEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 4456665 6765555556778888887432 22222211 1235689999998887776654
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.00 E-value=0.0017 Score=77.46 Aligned_cols=248 Identities=8% Similarity=-0.035 Sum_probs=140.6
Q ss_pred eEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCc
Q psy9598 552 PISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGL 631 (1915)
Q Consensus 552 ~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~ 631 (1915)
.+..+... ....+++|.+. +.++++...++.|..||..+.. .. ... ....+.+++++++|+
T Consensus 24 ~~~~~p~~-~~pegia~~~~----g~lyv~d~~~~~I~~~d~~g~~-~~--~~~-----------~~~~p~gia~~~dG~ 84 (306)
T 2p4o_A 24 IITSFPVN-TFLENLASAPD----GTIFVTNHEVGEIVSITPDGNQ-QI--HAT-----------VEGKVSGLAFTSNGD 84 (306)
T ss_dssp EEEEECTT-CCEEEEEECTT----SCEEEEETTTTEEEEECTTCCE-EE--EEE-----------CSSEEEEEEECTTSC
T ss_pred EeEeCCCC-CCcceEEECCC----CCEEEEeCCCCeEEEECCCCce-EE--EEe-----------CCCCceeEEEcCCCc
Confidence 34444322 45678999883 4677776688999999876531 11 111 114578999999998
Q ss_pred EEEEEeCCC--eEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCC
Q psy9598 632 FLATGSGDH--HVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLP 709 (1915)
Q Consensus 632 ~Lasgs~Dg--~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~ 709 (1915)
++++....+ .|..++... .....+..+ ........+++.+.+..+++...+|.|.++|..++......... ...
T Consensus 85 l~vad~~~~~~~v~~~d~~~-g~~~~~~~~-~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~--~~~ 160 (306)
T 2p4o_A 85 LVATGWNADSIPVVSLVKSD-GTVETLLTL-PDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHP--MLA 160 (306)
T ss_dssp EEEEEECTTSCEEEEEECTT-SCEEEEEEC-TTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECG--GGS
T ss_pred EEEEeccCCcceEEEEcCCC-CeEEEEEeC-CCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECC--ccc
Confidence 766654433 355566422 111222222 12233456666665555555556888888887654211111000 000
Q ss_pred CCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCC-Cce--EEEeeCCCCCeEEEEEccCCCCEEEEEecC
Q psy9598 710 HTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFN-GDL--VQVLKGHTNEVFVLESHPFDSRVLLSAGHD 786 (1915)
Q Consensus 710 ~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~t-g~~--i~~l~gH~~~V~sl~~sp~dg~~LaSgs~D 786 (1915)
.. .........+.+ ++++.+|+++....+.|.+|++.. +.. ...+.. ......|++.+ +++++++....
T Consensus 161 ~~----~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~-dG~l~va~~~~ 232 (306)
T 2p4o_A 161 RS----NSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDV-EGNLYGATHIY 232 (306)
T ss_dssp CS----STTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBT-TCCEEEECBTT
T ss_pred cc----cccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECC-CCCEEEEeCCC
Confidence 00 000111223344 788888888887688999999864 332 112211 12345678888 88887777778
Q ss_pred ceEEEEECCCCccccceeeeeeecCCCCcceEEEEEc---CCCCEEEEEeCCC
Q psy9598 787 GLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWS---PDGTTCALTDSYG 836 (1915)
Q Consensus 787 G~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafS---pdg~~Lasg~~dG 836 (1915)
+.|.+++.. ++. . .+.. +. ......++++|. |++..|.+++..+
T Consensus 233 ~~V~~~~~~-G~~--~-~~~~-~~-~~~~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 233 NSVVRIAPD-RST--T-IIAQ-AE-QGVIGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp CCEEEECTT-CCE--E-EEEC-GG-GTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred CeEEEECCC-CCE--E-EEee-cc-cccCCceEEEEecccCCCCEEEEECCCC
Confidence 899999875 433 1 1110 11 122457899998 8988777776643
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=97.97 E-value=0.00024 Score=94.64 Aligned_cols=279 Identities=11% Similarity=-0.001 Sum_probs=150.4
Q ss_pred EEEEeC-CCCEEEEEeCCC-----------cEEEEECCCCce--EEEeec-CCCCeEEEEeccCccCCCcEEEEEe-CCC
Q psy9598 523 DIAIDN-RNILLAAGTVDK-----------TIRIWNLQTLAP--ISVLVG-HQGIITGVNFCPLEVNGFNYLASTS-TDG 586 (1915)
Q Consensus 523 ~Lafsp-dg~~LaSgs~Dg-----------tIrVWDl~tg~~--~~~l~~-h~~~V~sl~fsp~~~~d~~~L~sgs-~Dg 586 (1915)
++++.+ ++.+++.|+.+. .+.+||+.++.- +..+.. +.....++++.. ++.++++|+ .++
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~----~g~lyv~GG~~~~ 265 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDG----NGQIVVTGGNDAK 265 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECT----TSCEEEECSSSTT
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCC----CCCEEEeCCCCCC
Confidence 566777 888888887643 588999987653 333322 333344566665 457888888 456
Q ss_pred eEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEe-CC-----CeEEEEEecCCCCCceeEEec
Q psy9598 587 CIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGS-GD-----HHVRVYKMDGVDSPLGILEVE 660 (1915)
Q Consensus 587 tI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs-~D-----g~I~IwDl~~~~~~~~i~~l~ 660 (1915)
.+.+||..+.......... .. ..-.++++.++|++++.|+ .+ ..+.+||.... . ...+.
T Consensus 266 ~v~~yd~~t~~W~~~~~~~----------~~-R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~-~---W~~~~ 330 (656)
T 1k3i_A 266 KTSLYDSSSDSWIPGPDMQ----------VA-RGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSK-T---WTSLP 330 (656)
T ss_dssp CEEEEEGGGTEEEECCCCS----------SC-CSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTT-E---EEEET
T ss_pred ceEEecCcCCceeECCCCC----------cc-ccccceEEecCCeEEEEeCcccCCcccccceEeCCCCC-c---ceeCC
Confidence 8999998876422111100 01 1123456667899999988 34 46889998432 1 11110
Q ss_pred c-----CCCCeeEEEEcCCCCEEEEEeCCC---------cEEEEEccCCceEEeeecccccCCCCccccccccccccEEE
Q psy9598 661 E-----HSDKVDSIQWSHSHLRFVSGSRDG---------TALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTM 726 (1915)
Q Consensus 661 ~-----h~~~V~sl~fspdg~~L~sgs~DG---------~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~ 726 (1915)
. ....-....+..++..++.|+.+| .+..||..+..|.......... .........-.+
T Consensus 331 ~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~-------~~~~~~~~~~~a 403 (656)
T 1k3i_A 331 NAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSN-------RGVAPDAMCGNA 403 (656)
T ss_dssp TSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEET-------TEECCCCBTCEE
T ss_pred CccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccc-------cccCCCCCCCce
Confidence 0 000000011234455555565544 4678888877765321100000 000000112244
Q ss_pred EEECC-CCCEEEEEEecCC-----------eEEEEECCCCceEEEe--eCCCCCe-EEEEEccCCCCEEEEEecC-----
Q psy9598 727 VAWDA-SDRWVITAINFNF-----------QIKIWDAFNGDLVQVL--KGHTNEV-FVLESHPFDSRVLLSAGHD----- 786 (1915)
Q Consensus 727 va~sp-dg~~L~t~s~~Dg-----------~I~vwD~~tg~~i~~l--~gH~~~V-~sl~~sp~dg~~LaSgs~D----- 786 (1915)
+.|.. ++..+++|+. ++ .|.+||..+....... ..+.... .++++.| ++.+++.||.+
T Consensus 404 v~~~~~~~~i~v~GG~-~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~-~g~i~v~GG~~~~~~~ 481 (656)
T 1k3i_A 404 VMYDAVKGKILTFGGS-PDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLP-DGSTFITGGQRRGIPF 481 (656)
T ss_dssp EEEETTTTEEEEECCB-SSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECT-TSCEEEECCBSBCCTT
T ss_pred EeccCCCCeEEEEeCC-CCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECC-CCCEEEECCcccCcCc
Confidence 55543 5666666664 32 6888888776654443 2222222 3445567 88999999865
Q ss_pred ------ceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEEeC
Q psy9598 787 ------GLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDS 834 (1915)
Q Consensus 787 ------G~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~ 834 (1915)
..+.+||..+.+-..+..+. .......++.+.+||+++++|+.
T Consensus 482 ~~~~~~~~v~~ydp~t~~W~~~~~~~-----~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 482 EDSTPVFTPEIYVPEQDTFYKQNPNS-----IVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp CCCSBCCCCEEEEGGGTEEEECCCCS-----SCCCTTEEEEECTTSCEEEEECC
T ss_pred CCCCcccceEEEcCCCCceeecCCCC-----CccccccHhhcCCCcEEEecCCC
Confidence 46899998775431111110 11122234556789999998885
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=97.95 E-value=0.00018 Score=83.58 Aligned_cols=193 Identities=9% Similarity=-0.029 Sum_probs=124.8
Q ss_pred CeeEEEEcCCCCEEEEEeC--CCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEec
Q psy9598 665 KVDSIQWSHSHLRFVSGSR--DGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINF 742 (1915)
Q Consensus 665 ~V~sl~fspdg~~L~sgs~--DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~ 742 (1915)
....|+|++++.++++.+. ++.|.++|+.+++...... . . .......++++ +..|+.+...
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~-l----~----------~~~fgeGi~~~--g~~lyv~t~~ 84 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHK-M----D----------DSYFGEGLTLL--NEKLYQVVWL 84 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEE-C----C----------TTCCEEEEEEE--TTEEEEEETT
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEe-c----C----------CCcceEEEEEe--CCEEEEEEec
Confidence 3579999998755555543 5799999999998654321 0 0 01111234443 6678777777
Q ss_pred CCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEE
Q psy9598 743 NFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKW 822 (1915)
Q Consensus 743 Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vaf 822 (1915)
++.+.++|..+++.+..+......-+. +++ ++..|+++..++.|.++|..+.+. +..+..-..+.....+..+.|
T Consensus 85 ~~~v~viD~~t~~v~~~i~~g~~~g~g--lt~-Dg~~l~vs~gs~~l~viD~~t~~v--~~~I~Vg~~~~p~~~~nele~ 159 (266)
T 2iwa_A 85 KNIGFIYDRRTLSNIKNFTHQMKDGWG--LAT-DGKILYGSDGTSILYEIDPHTFKL--IKKHNVKYNGHRVIRLNELEY 159 (266)
T ss_dssp CSEEEEEETTTTEEEEEEECCSSSCCE--EEE-CSSSEEEECSSSEEEEECTTTCCE--EEEEECEETTEECCCEEEEEE
T ss_pred CCEEEEEECCCCcEEEEEECCCCCeEE--EEE-CCCEEEEECCCCeEEEEECCCCcE--EEEEEECCCCcccccceeEEE
Confidence 999999999999999998632122233 445 555555555688999999988776 555442211122234677888
Q ss_pred cCCCCEEEEEeCCCeEEEEeCCCCcccccCC-------------------CceeecCCCCeeeecCCCc--cceeeccc
Q psy9598 823 SPDGTTCALTDSYGHLLVYGLGGFKRPQNIP-------------------RELFFHTDYRTLNRPNGLF--EPTYDEVT 880 (1915)
Q Consensus 823 Spdg~~Lasg~~dG~I~Iwdl~s~~~~~~l~-------------------~~~~F~~d~~~Lv~~~~~~--~~v~D~~t 880 (1915)
. +|..++....++.|.+.|..+++....++ ..+.|++++..+......+ +.+.+..+
T Consensus 160 ~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~ 237 (266)
T 2iwa_A 160 I-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL 237 (266)
T ss_dssp E-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred E-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence 8 77666666677899999999988765553 3567888876655433333 33445443
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.94 E-value=0.006 Score=74.37 Aligned_cols=240 Identities=13% Similarity=-0.044 Sum_probs=147.2
Q ss_pred EEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCcccc
Q psy9598 521 ISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDIS 600 (1915)
Q Consensus 521 I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~ 600 (1915)
.+|.+..++. +|+.+. ...|+..++........+. ....+..|+|.+. ++.++++-...+.|..+++.+.....
T Consensus 36 ~~C~~~~~~~-~ll~~~-~~~I~~i~~~g~~~~~~~~-~~~~~~~l~~d~~---~~~ly~~D~~~~~I~r~~~~g~~~~~ 109 (349)
T 3v64_C 36 RSCKALGPEP-VLLFAN-RIDIRQVLPHRSEYTLLLN-NLENAIALDFHHR---RELVFWSDVTLDRILRANLNGSNVEE 109 (349)
T ss_dssp SCEEESSSCC-EEEEEC-BSCEEEECTTSCCEEEEEC-SCSCEEEEEEETT---TTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred CcccccccCc-eeEeec-ccceEEEeCCCCeeEEeec-CCCceEEEEEecc---ccEEEEEeccCCceEEEecCCCCceE
Confidence 3455555544 343333 3458888887655444443 3445789999874 34556666677889989887653211
Q ss_pred ceeccCccccccccCCCCCceEEEEECCC-CcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEE
Q psy9598 601 KTVFHEPVMFNERIRPGNAHILCSSFSPG-GLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFV 679 (1915)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~V~~l~fspd-g~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~ 679 (1915)
+ .. ........+++.+. +.++++-...+.|.++++++.. . ...+...-.....|+++|.+..|+
T Consensus 110 -~-~~----------~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~--~-~~l~~~~l~~P~~iavdp~~g~ly 174 (349)
T 3v64_C 110 -V-VS----------TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH--R-KVLLWQSLEKPRAIALHPMEGTIY 174 (349)
T ss_dssp -E-EC----------SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS--C-EEEECTTCSCEEEEEEETTTTEEE
T ss_pred -E-Ee----------CCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCc--e-EEEEeCCCCCcceEEEecCcCeEE
Confidence 1 00 11133567888874 5555666667899999985432 1 122233345678999998655544
Q ss_pred -EEeCC-CcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceE
Q psy9598 680 -SGSRD-GTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLV 757 (1915)
Q Consensus 680 -sgs~D-G~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i 757 (1915)
+-... +.|..+++.......+ ........+.|+|++++..|+.+....+.|..+++......
T Consensus 175 ~td~~~~~~I~r~~~dG~~~~~~----------------~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~ 238 (349)
T 3v64_C 175 WTDWGNTPRIEASSMDGSGRRII----------------ADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRK 238 (349)
T ss_dssp EEECSSSCEEEEEETTSCSCEES----------------CCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred EeccCCCCEEEEEeCCCCCcEEE----------------EECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceE
Confidence 44444 6777777654331110 00122346789999998888888876789999998654433
Q ss_pred EEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCcc
Q psy9598 758 QVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQ 799 (1915)
Q Consensus 758 ~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~ 799 (1915)
..+........+|++. .+.++++-...+.|..++..++..
T Consensus 239 ~~~~~~~~~P~giav~--~~~ly~td~~~~~V~~~~~~~G~~ 278 (349)
T 3v64_C 239 AVISQGLPHPFAITVF--EDSLYWTDWHTKSINSANKFTGKN 278 (349)
T ss_dssp EEECSSCSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCS
T ss_pred EEEeCCCCCceEEEEE--CCEEEEecCCCCeEEEEEccCCCc
Confidence 3444444556778873 466666666778888888666655
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=97.92 E-value=0.011 Score=71.35 Aligned_cols=277 Identities=12% Similarity=0.014 Sum_probs=149.6
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEee----cCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEec
Q psy9598 518 SGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLV----GHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKY 593 (1915)
Q Consensus 518 ~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~----~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl 593 (1915)
...+.+|.|.+.+..+++ +..|.| ++....|+.-..+. .....+.+|.|.+ ..++.++..|.|.. ..
T Consensus 35 ~~~~~~v~~~~~~~~~~~-G~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~------~~~~~~g~~g~i~~-S~ 105 (327)
T 2xbg_A 35 TATILDMSFIDRHHGWLV-GVNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG------NEGWIVGEPPIMLH-TT 105 (327)
T ss_dssp SSCEEEEEESSSSCEEEE-ETTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET------TEEEEEEETTEEEE-ES
T ss_pred CCcEEEEEECCCCcEEEE-cCCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC------CeEEEEECCCeEEE-EC
Confidence 457899999887777775 456755 33444443322221 1244688899875 23344455665433 22
Q ss_pred ccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcC
Q psy9598 594 KLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSH 673 (1915)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fsp 673 (1915)
+.+......... ......+..+.+.+++..++++ .+|.|.. ..+...+...+ ...+...+.++++.+
T Consensus 106 DgG~tW~~~~~~---------~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~tW~~~--~~~~~~~~~~~~~~~ 172 (327)
T 2xbg_A 106 DGGQSWSQIPLD---------PKLPGSPRLIKALGNGSAEMIT-NVGAIYR-TKDSGKNWQAL--VQEAIGVMRNLNRSP 172 (327)
T ss_dssp STTSSCEECCCC---------TTCSSCEEEEEEEETTEEEEEE-TTCCEEE-ESSTTSSEEEE--ECSCCCCEEEEEECT
T ss_pred CCCCCceECccc---------cCCCCCeEEEEEECCCCEEEEe-CCccEEE-EcCCCCCCEEe--ecCCCcceEEEEEcC
Confidence 223221111110 0112346778877777666655 4554422 11222222222 234556789999999
Q ss_pred CCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCC
Q psy9598 674 SHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFN 753 (1915)
Q Consensus 674 dg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~t 753 (1915)
++.+++++...+..+-+|-....|.... ......+..+++++++..++++ . +|.+++++...
T Consensus 173 ~~~~~~~g~~G~~~~S~d~gG~tW~~~~----------------~~~~~~~~~~~~~~~g~~~~~~-~-~G~~~~s~~D~ 234 (327)
T 2xbg_A 173 SGEYVAVSSRGSFYSTWEPGQTAWEPHN----------------RTTSRRLHNMGFTPDGRLWMIV-N-GGKIAFSDPDN 234 (327)
T ss_dssp TSCEEEEETTSSEEEEECTTCSSCEEEE----------------CCSSSCEEEEEECTTSCEEEEE-T-TTEEEEEETTE
T ss_pred CCcEEEEECCCcEEEEeCCCCCceeECC----------------CCCCCccceeEECCCCCEEEEe-C-CceEEEecCCC
Confidence 9887776654443333432223333221 0123467788899988766544 4 78887764332
Q ss_pred CceEEEee-C---CCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecC-CCCcceEEEEEcCCCCE
Q psy9598 754 GDLVQVLK-G---HTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEG-QGEGALFDGKWSPDGTT 828 (1915)
Q Consensus 754 g~~i~~l~-g---H~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~-~~~~~V~~vafSpdg~~ 828 (1915)
|.....+. + +...+.+|.+.+ ++.+++++ .+|.| ++....+.. -..+. .. .....++++.|.+++.
T Consensus 235 G~tW~~~~~~~~~~~~~~~~v~~~~-~~~~~~~g-~~g~i-~~S~DgG~t--W~~~~---~~~~~~~~~~~v~~~~~~~- 305 (327)
T 2xbg_A 235 SENWGELLSPLRRNSVGFLDLAYRT-PNEVWLAG-GAGAL-LCSQDGGQT--WQQDV---DVKKVPSNFYKILFFSPDQ- 305 (327)
T ss_dssp EEEECCCBCTTSSCCSCEEEEEESS-SSCEEEEE-STTCE-EEESSTTSS--CEECG---GGTTSSSCCCEEEEEETTE-
T ss_pred CCeeEeccCCcccCCcceEEEEecC-CCEEEEEe-CCCeE-EEeCCCCcc--cEEcC---ccCCCCCCeEEEEEECCCc-
Confidence 33322222 1 223588999987 66666654 47777 455555543 22111 11 1235678888875554
Q ss_pred EEEEeCCCeEEEEeC
Q psy9598 829 CALTDSYGHLLVYGL 843 (1915)
Q Consensus 829 Lasg~~dG~I~Iwdl 843 (1915)
+++++.+|.|.-++-
T Consensus 306 ~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 306 GFILGQKGILLRYVT 320 (327)
T ss_dssp EEEECSTTEEEEECC
T ss_pred eEEEcCCceEEEEcC
Confidence 666677888776653
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.90 E-value=0.0021 Score=80.76 Aligned_cols=257 Identities=7% Similarity=-0.026 Sum_probs=142.2
Q ss_pred CcEEEEEEcC-CCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeC-CC----cEEEEECCCC
Q psy9598 477 SAVFCVLFDK-LGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTV-DK----TIRIWNLQTL 550 (1915)
Q Consensus 477 ~~V~~vafsp-dg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~-Dg----tIrVWDl~tg 550 (1915)
.....|+|+| ++..|+++...+.|.++|+.++.....+ ........|+|+++|++|+.+.. ++ .|.+.+ ..+
T Consensus 137 ~~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~-~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~-~~g 214 (430)
T 3tc9_A 137 GGAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVY-SGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILT-RES 214 (430)
T ss_dssp SCCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEE-CCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEE-GGG
T ss_pred CCCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEe-cCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEe-CCC
Confidence 3457899998 4556666665588999999776654443 34566899999999996555543 22 233333 333
Q ss_pred ceE--EEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECC
Q psy9598 551 API--SVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSP 628 (1915)
Q Consensus 551 ~~~--~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fsp 628 (1915)
... ..+. ......++++.|. ++.++++-..++.|..|+..++........ +.......++|+|
T Consensus 215 ~~~~~~~l~-~~~~p~giavdp~---~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~-----------~~~~~P~gia~~p 279 (430)
T 3tc9_A 215 GFKVITELT-KGQNCNGAETHPI---NGELYFNSWNAGQVFRYDFTTQETTPLFTI-----------QDSGWEFHIQFHP 279 (430)
T ss_dssp TSCSEEEEE-ECSSCCCEEECTT---TCCEEEEETTTTEEEEEETTTTEEEEEEEC-----------SSSSCCEEEEECT
T ss_pred ceeeeeeec-cCCCceEEEEeCC---CCEEEEEECCCCEEEEEECCCCcEEEEEEc-----------CCCCcceeEEEcC
Confidence 222 2232 1234567888883 346666666788999999875532111000 1113467899999
Q ss_pred CCcE-EEEEeCCCeEEEEEecCCCC-CceeEEeccC---------------CCCee-EEEEc--------CCCCEEEEEe
Q psy9598 629 GGLF-LATGSGDHHVRVYKMDGVDS-PLGILEVEEH---------------SDKVD-SIQWS--------HSHLRFVSGS 682 (1915)
Q Consensus 629 dg~~-Lasgs~Dg~I~IwDl~~~~~-~~~i~~l~~h---------------~~~V~-sl~fs--------pdg~~L~sgs 682 (1915)
+|++ +++-...+.|..++.+.... ...+..+.+. -.... .+++. ++|.++++-.
T Consensus 280 dG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~ 359 (430)
T 3tc9_A 280 SGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDR 359 (430)
T ss_dssp TSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEG
T ss_pred CCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEEC
Confidence 9994 55555678999998854211 0001111111 11122 45443 3455556656
Q ss_pred CCCcEEEEEccCCceEEeeecccccCCCCccc-cccccccccEEEEEECCCCCEEEEEEecCCeEEEEEC
Q psy9598 683 RDGTALIWYYKCSQWRFIRLDMNTCLPHTKET-SDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDA 751 (1915)
Q Consensus 683 ~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~ 751 (1915)
..+.|+.++. .+....+.-.-.....+.... ......-.....|++++++..|+++...++.|+.+++
T Consensus 360 ~n~~I~~i~~-~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~ 428 (430)
T 3tc9_A 360 ENHCIRILTP-QGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGY 428 (430)
T ss_dssp GGTEEEEECT-TSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred CCcEEEEECC-CCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEcc
Confidence 6677888773 343222111000000000000 0011122356889999976667777665778888765
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=97.89 E-value=0.0038 Score=78.46 Aligned_cols=258 Identities=8% Similarity=-0.043 Sum_probs=143.1
Q ss_pred CcEEEEEEcCC--CCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCC---Cc-EEEEECCCC
Q psy9598 477 SAVFCVLFDKL--GEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVD---KT-IRIWNLQTL 550 (1915)
Q Consensus 477 ~~V~~vafspd--g~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~D---gt-IrVWDl~tg 550 (1915)
..-.+|+|+|+ +..|+.+...+.|+.+++.++..... .+......+|+|+++|.++++.... .. +...+...+
T Consensus 139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~-~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~ 217 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIK-TTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASG 217 (433)
T ss_dssp SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEE-CCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGT
T ss_pred CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEe-ecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCC
Confidence 45678999984 44555554448999999988776554 3445568999999999955554321 12 222332221
Q ss_pred ce-EEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCC
Q psy9598 551 AP-ISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPG 629 (1915)
Q Consensus 551 ~~-~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspd 629 (1915)
.. ...+. .......+++.|. ++.++++-..++.|..++..++.....+... ........++|+|+
T Consensus 218 ~~~~~~~~-~~~~P~giavd~~---~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~----------~~~~~~~~ia~dpd 283 (433)
T 4hw6_A 218 FTERLSLC-NARGAKTCAVHPQ---NGKIYYTRYHHAMISSYDPATGTLTEEEVMM----------DTKGSNFHIVWHPT 283 (433)
T ss_dssp TCCEEEEE-ECSSBCCCEECTT---TCCEEECBTTCSEEEEECTTTCCEEEEEEEC----------SCCSSCEEEEECTT
T ss_pred eecccccc-ccCCCCEEEEeCC---CCeEEEEECCCCEEEEEECCCCeEEEEEecc----------CCCCCcccEEEeCC
Confidence 11 11221 2334566778772 2355556667788999988755431111110 01122347999999
Q ss_pred CcEE-EEEeCCCeEEEEEecCCCC-CceeEEeccC---------------CCCeeEEEE---------cCCCCEEEEEeC
Q psy9598 630 GLFL-ATGSGDHHVRVYKMDGVDS-PLGILEVEEH---------------SDKVDSIQW---------SHSHLRFVSGSR 683 (1915)
Q Consensus 630 g~~L-asgs~Dg~I~IwDl~~~~~-~~~i~~l~~h---------------~~~V~sl~f---------spdg~~L~sgs~ 683 (1915)
|++| ++-...+.|..++++.... ......+.+. -.....|++ ..+|.++++-..
T Consensus 284 G~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~ 363 (433)
T 4hw6_A 284 GDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRD 363 (433)
T ss_dssp SSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETT
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECC
Confidence 9844 5555678999988753211 1111111111 123567888 677777777777
Q ss_pred CCcEEEEEccCCceEEeeecccc-cCCCCccc-cccccccccEEEEEECCCCCEEEEEEecCCeEEEEEC
Q psy9598 684 DGTALIWYYKCSQWRFIRLDMNT-CLPHTKET-SDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDA 751 (1915)
Q Consensus 684 DG~I~IWDl~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~ 751 (1915)
.+.|+.++. .+....+. .... +..+.... ......-.....|++++.+..|+++...++.|+.+++
T Consensus 364 n~~I~~~~~-~G~v~t~~-G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~ 431 (433)
T 4hw6_A 364 SHTVRVLTP-EGRVTTYA-GRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAP 431 (433)
T ss_dssp TTEEEEECT-TSEEEEEE-CCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred CCEEEEECC-CCCEEEEE-eCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEec
Confidence 788998875 34322211 1100 00000000 0011122346789999555556666654778888765
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=97.89 E-value=0.077 Score=69.64 Aligned_cols=334 Identities=10% Similarity=-0.030 Sum_probs=182.5
Q ss_pred CCcEEEEEEcCCCCE-EEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeC--CCcEEEEECCCCce
Q psy9598 476 LSAVFCVLFDKLGEV-IVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTV--DKTIRIWNLQTLAP 552 (1915)
Q Consensus 476 ~~~V~~vafspdg~~-LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~--DgtIrVWDl~tg~~ 552 (1915)
......|++++.+.. +++-...+.|.+.++........+...-.....|++.|.+.+|+.+.. .+.|...++.....
T Consensus 83 ~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~ 162 (619)
T 3s94_A 83 LLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR 162 (619)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSC
T ss_pred CCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCce
Confidence 367889999985554 455556789999998654433333344456788999997655555443 35676667664333
Q ss_pred EEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcE
Q psy9598 553 ISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLF 632 (1915)
Q Consensus 553 ~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~ 632 (1915)
...+.......+.|++.+.. +.++++-+..+.|..+++....... +. . ........+++..+ .+
T Consensus 163 ~~l~~~~~~~P~Glald~~~---~~LY~aD~~~~~I~~~~~dG~~~~~-~~-~----------~~~~~P~gi~~~~~-~l 226 (619)
T 3s94_A 163 FIIINSEIYWPNGLTLDYEE---QKLYWADAKLNFIHKSNLDGTNRQA-VV-K----------GSLPHPFALTLFED-IL 226 (619)
T ss_dssp EEEECSSCSSEEEEEEETTT---TEEEEEETTTCCEEEESSSCCEEC---------------------CCCEEESSS-EE
T ss_pred EEEEeCCCCCCcEEEEEccC---CEEEEEeCCCCeEEEecCCCCccEE-EE-e----------CCCCCceEEEEeCC-EE
Confidence 33333344567899998843 3555555667788888886542111 10 0 00112235566554 44
Q ss_pred EEEEeCCCeEEEEEecCCCC----------CceeEEeccC------------CCCeeEEEE-cCCCCEEEEEeCCC----
Q psy9598 633 LATGSGDHHVRVYKMDGVDS----------PLGILEVEEH------------SDKVDSIQW-SHSHLRFVSGSRDG---- 685 (1915)
Q Consensus 633 Lasgs~Dg~I~IwDl~~~~~----------~~~i~~l~~h------------~~~V~sl~f-spdg~~L~sgs~DG---- 685 (1915)
+++-...+.|...|..+... +..+..+... .+....+|+ +|.+....+.+.+|
T Consensus 227 y~td~~~~~V~~~d~~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~ 306 (619)
T 3s94_A 227 YWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLL 306 (619)
T ss_dssp EEECTTTCSEEEEESSSCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBC
T ss_pred EEecCCCCEEEEEECCCCcccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheec
Confidence 44444566777777533221 1111111000 001111222 11111111222221
Q ss_pred --------------------cEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCe
Q psy9598 686 --------------------TALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQ 745 (1915)
Q Consensus 686 --------------------~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~ 745 (1915)
.|+..++..... ..... ....-..+..|+|++.+..|+.+....+.
T Consensus 307 ~d~~~C~~~~~~~Ll~~~~~~i~~i~l~~~~~-------------~~~~~-~~~~l~~~~~ld~d~~~~~ly~sD~~~~~ 372 (619)
T 3s94_A 307 ENGKTCKDGATELLLLARRTDLRRISLDTPDF-------------TDIVL-QLEDIRHAIAIDYDPVEGYIYWTDDEVRA 372 (619)
T ss_dssp TTSSCBCSSCSEEEEEEESSCEEEEESSSTTC-------------CCEEC-CCSCCSSEEEEEEETTTTEEEEEETTTTE
T ss_pred ccCcccCCCCceEEEEEcccceEEEecCCCcc-------------ceeEE-eccccCccEEEEEEcCCCeEEEEeCCCCe
Confidence 222222221110 00000 01112346789999988888877765889
Q ss_pred EEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCC
Q psy9598 746 IKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPD 825 (1915)
Q Consensus 746 I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpd 825 (1915)
|+.+++........+...-.....|++....++++++-+..+.|.+.++..... ..+. ........++++.|.
T Consensus 373 I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~---~~l~----~~~l~~P~~iavdp~ 445 (619)
T 3s94_A 373 IRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMR---KILI----SEDLEEPRAIVLDPM 445 (619)
T ss_dssp EEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC---EEEE----CTTCCSEEEEEEETT
T ss_pred EEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeE---EEEE----ECCCCCeeeEEEEcC
Confidence 999998765444444433345678888864566777767788999999875432 2221 223456889999997
Q ss_pred CCEEEEEeC--CCeEEEEeCCCC
Q psy9598 826 GTTCALTDS--YGHLLVYGLGGF 846 (1915)
Q Consensus 826 g~~Lasg~~--dG~I~Iwdl~s~ 846 (1915)
...|..++. .+.|...+++..
T Consensus 446 ~G~ly~tD~g~~~~I~r~~~dG~ 468 (619)
T 3s94_A 446 VGYMYWTDWGEIPKIERAALDGS 468 (619)
T ss_dssp TTEEEEEECSSSCEEEEEETTSC
T ss_pred CCcEEEecCCCCCEEEEEccCCC
Confidence 666666653 367777777654
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.88 E-value=0.0046 Score=75.38 Aligned_cols=247 Identities=11% Similarity=-0.003 Sum_probs=149.2
Q ss_pred CcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEE-EEeCCCcEEEEECCCCceEEE
Q psy9598 477 SAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLA-AGTVDKTIRIWNLQTLAPISV 555 (1915)
Q Consensus 477 ~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~La-Sgs~DgtIrVWDl~tg~~~~~ 555 (1915)
+..+|.+..+.+ +|+.+. ...|+..++........+.+ ...+..|+|++.+..|+ +-...+.|..+++..+.....
T Consensus 34 d~~~C~~~~~~~-~ll~~~-~~~I~~i~~~g~~~~~~~~~-~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~ 110 (349)
T 3v64_C 34 DRRSCKALGPEP-VLLFAN-RIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEV 110 (349)
T ss_dssp TSSCEEESSSCC-EEEEEC-BSCEEEECTTSCCEEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred CCCcccccccCc-eeEeec-ccceEEEeCCCCeeEEeecC-CCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEE
Confidence 345577776644 444443 34688888876655554443 34588999997655554 545678899999987665444
Q ss_pred eecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEE-
Q psy9598 556 LVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLA- 634 (1915)
Q Consensus 556 l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~La- 634 (1915)
+.........|++.+. ++.++++-...+.|.+.++..... ..... ........++++|.+..|+
T Consensus 111 ~~~~~~~p~glavd~~---~g~ly~~d~~~~~I~~~~~dG~~~--~~l~~----------~~l~~P~~iavdp~~g~ly~ 175 (349)
T 3v64_C 111 VSTGLESPGGLAVDWV---HDKLYWTDSGTSRIEVANLDGAHR--KVLLW----------QSLEKPRAIALHPMEGTIYW 175 (349)
T ss_dssp ECSSCSCCCEEEEETT---TTEEEEEETTTTEEEEEETTSCSC--EEEEC----------TTCSCEEEEEEETTTTEEEE
T ss_pred EeCCCCCccEEEEecC---CCeEEEEcCCCCeEEEEcCCCCce--EEEEe----------CCCCCcceEEEecCcCeEEE
Confidence 4433445678888763 345666666778899998875421 11111 1124568899998655444
Q ss_pred EEeCC-CeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEE-eCCCcEEEEEccCCceEEeeecccccCCCCc
Q psy9598 635 TGSGD-HHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSG-SRDGTALIWYYKCSQWRFIRLDMNTCLPHTK 712 (1915)
Q Consensus 635 sgs~D-g~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sg-s~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~ 712 (1915)
+-... +.|..+++++... . ......-.....|+|++++..|+.+ +..+.|..+++.......+..
T Consensus 176 td~~~~~~I~r~~~dG~~~--~-~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~---------- 242 (349)
T 3v64_C 176 TDWGNTPRIEASSMDGSGR--R-IIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVIS---------- 242 (349)
T ss_dssp EECSSSCEEEEEETTSCSC--E-ESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC----------
T ss_pred eccCCCCEEEEEeCCCCCc--E-EEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEe----------
Confidence 44444 7788888754321 1 1112233457899999866655554 456778888876543221110
Q ss_pred cccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeC
Q psy9598 713 ETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKG 762 (1915)
Q Consensus 713 ~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~g 762 (1915)
........+++ ++..|+.+....+.|..++..+|..+..+..
T Consensus 243 ------~~~~~P~giav--~~~~ly~td~~~~~V~~~~~~~G~~~~~i~~ 284 (349)
T 3v64_C 243 ------QGLPHPFAITV--FEDSLYWTDWHTKSINSANKFTGKNQEIIRN 284 (349)
T ss_dssp ------SSCSSEEEEEE--ETTEEEEEETTTTEEEEEETTTCCSCEEEEC
T ss_pred ------CCCCCceEEEE--ECCEEEEecCCCCeEEEEEccCCCccEEecc
Confidence 01123455666 2445666665578888888777776666653
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=97.86 E-value=0.015 Score=70.13 Aligned_cols=275 Identities=9% Similarity=0.012 Sum_probs=149.5
Q ss_pred CCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEe----CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCc
Q psy9598 476 LSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLR----GCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLA 551 (1915)
Q Consensus 476 ~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~----gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~ 551 (1915)
...+.+|.|...+..+|+| ..|.| ++....|+.-..+. .....+.+|.|++ +..++ ++..+.|.. ....|+
T Consensus 35 ~~~~~~v~~~~~~~~~~~G-~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~~~~-~g~~g~i~~-S~DgG~ 109 (327)
T 2xbg_A 35 TATILDMSFIDRHHGWLVG-VNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NEGWI-VGEPPIMLH-TTDGGQ 109 (327)
T ss_dssp SSCEEEEEESSSSCEEEEE-TTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET-TEEEE-EEETTEEEE-ESSTTS
T ss_pred CCcEEEEEECCCCcEEEEc-CCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC-CeEEE-EECCCeEEE-ECCCCC
Confidence 4579999998878877754 56655 34444443211111 1244689999986 44444 445665443 333344
Q ss_pred eEEEee---cCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECC
Q psy9598 552 PISVLV---GHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSP 628 (1915)
Q Consensus 552 ~~~~l~---~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fsp 628 (1915)
.-..+. .+.+.+..|.+.+. +..++++ .+|.|.. ..+.+....... .+....+.++++.+
T Consensus 110 tW~~~~~~~~~~~~~~~i~~~~~----~~~~~~~-~~g~v~~-S~DgG~tW~~~~-----------~~~~~~~~~~~~~~ 172 (327)
T 2xbg_A 110 SWSQIPLDPKLPGSPRLIKALGN----GSAEMIT-NVGAIYR-TKDSGKNWQALV-----------QEAIGVMRNLNRSP 172 (327)
T ss_dssp SCEECCCCTTCSSCEEEEEEEET----TEEEEEE-TTCCEEE-ESSTTSSEEEEE-----------CSCCCCEEEEEECT
T ss_pred CceECccccCCCCCeEEEEEECC----CCEEEEe-CCccEEE-EcCCCCCCEEee-----------cCCCcceEEEEEcC
Confidence 333322 23456777877652 3455544 4554322 112222111111 11234688999999
Q ss_pred CCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCc-eEEeeeccccc
Q psy9598 629 GGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQ-WRFIRLDMNTC 707 (1915)
Q Consensus 629 dg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~-~~~~~~~~~~~ 707 (1915)
++.+++++...+..+-+|- +......+. ......+..+++.+++..+ .++.+|.+.+++...+. |....
T Consensus 173 ~~~~~~~g~~G~~~~S~d~-gG~tW~~~~--~~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~D~G~tW~~~~------ 242 (327)
T 2xbg_A 173 SGEYVAVSSRGSFYSTWEP-GQTAWEPHN--RTTSRRLHNMGFTPDGRLW-MIVNGGKIAFSDPDNSENWGELL------ 242 (327)
T ss_dssp TSCEEEEETTSSEEEEECT-TCSSCEEEE--CCSSSCEEEEEECTTSCEE-EEETTTEEEEEETTEEEEECCCB------
T ss_pred CCcEEEEECCCcEEEEeCC-CCCceeECC--CCCCCccceeEECCCCCEE-EEeCCceEEEecCCCCCeeEecc------
Confidence 9887776654333333332 122332221 2345678899999988655 55567877776322121 11100
Q ss_pred CCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEee---CCCCCeEEEEEccCCCCEEEEEe
Q psy9598 708 LPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLK---GHTNEVFVLESHPFDSRVLLSAG 784 (1915)
Q Consensus 708 ~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~---gH~~~V~sl~~sp~dg~~LaSgs 784 (1915)
.+ .......+..+++.+++..++++. +|.| ++....|..-..+. .+...+++|.|.+ + ..+++++
T Consensus 243 ~~-------~~~~~~~~~~v~~~~~~~~~~~g~--~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~-~-~~~~~~G 310 (327)
T 2xbg_A 243 SP-------LRRNSVGFLDLAYRTPNEVWLAGG--AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFS-P-DQGFILG 310 (327)
T ss_dssp CT-------TSSCCSCEEEEEESSSSCEEEEES--TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEE-T-TEEEEEC
T ss_pred CC-------cccCCcceEEEEecCCCEEEEEeC--CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEEC-C-CceEEEc
Confidence 00 001123578899998877666554 6766 34455555444443 2345678888875 3 4577778
Q ss_pred cCceEEEEEC
Q psy9598 785 HDGLIIIWDI 794 (1915)
Q Consensus 785 ~DG~I~IWdl 794 (1915)
.+|.|.-++-
T Consensus 311 ~~G~i~~~~~ 320 (327)
T 2xbg_A 311 QKGILLRYVT 320 (327)
T ss_dssp STTEEEEECC
T ss_pred CCceEEEEcC
Confidence 8998776653
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=97.86 E-value=0.0013 Score=89.08 Aligned_cols=251 Identities=11% Similarity=-0.010 Sum_probs=132.4
Q ss_pred CCCC-CEEEEEEe-CCCCEEEEEeC-CC----cEEEEECCCC-ceEE-EeecCCCCeEEEEeccCccCCCcEEEEEeCC-
Q psy9598 516 GCSG-EISDIAID-NRNILLAAGTV-DK----TIRIWNLQTL-APIS-VLVGHQGIITGVNFCPLEVNGFNYLASTSTD- 585 (1915)
Q Consensus 516 gH~~-~I~~Lafs-pdg~~LaSgs~-Dg----tIrVWDl~tg-~~~~-~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~D- 585 (1915)
+|.- .+...+|| |||++||-+.. +| +|+++|+.++ ..+. .+. ....+++|+|+ ++.|+..+.+
T Consensus 170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspD----g~~l~y~~~d~ 242 (751)
T 2xe4_A 170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPD----HTSLFYVTKDE 242 (751)
T ss_dssp TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSS----TTEEEEEEECT
T ss_pred CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecC----CCEEEEEEECC
Confidence 3443 67889999 99998875543 22 5999999998 6321 111 12356889984 3666666654
Q ss_pred ----CeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeC---CCeEEEEEecCCCCCceeEE
Q psy9598 586 ----GCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSG---DHHVRVYKMDGVDSPLGILE 658 (1915)
Q Consensus 586 ----gtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~---Dg~I~IwDl~~~~~~~~i~~ 658 (1915)
..|.++++.++.......+.. ........+.|+|||++|+..+. ...|.++|+.+......+..
T Consensus 243 ~~~~~~v~~~~lgt~~~~~~lv~~~---------~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~ 313 (751)
T 2xe4_A 243 TLRENKVWRHVMGKLQSEDVCLYEE---------HNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEI 313 (751)
T ss_dssp TCCEEEEEEEETTSCGGGCEEEEEC---------CCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEE
T ss_pred CCCCCEEEEEECCCCchhcEEEEec---------CCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEE
Confidence 257777776653221122210 11234567899999998887653 34678888854311110022
Q ss_pred e-ccCCCCeeEEEEcCCCCEEEEEeCC--C--cEEEEEccC-CceEE-eeecccccCCCCccccccccccccEEEEEECC
Q psy9598 659 V-EEHSDKVDSIQWSHSHLRFVSGSRD--G--TALIWYYKC-SQWRF-IRLDMNTCLPHTKETSDETNKKIKVTMVAWDA 731 (1915)
Q Consensus 659 l-~~h~~~V~sl~fspdg~~L~sgs~D--G--~I~IWDl~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~V~~va~sp 731 (1915)
+ ....+...++.|+..+.+++.+..+ + .|.++++.+ +.|.. +. + ......+..+.+.
T Consensus 314 l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li-------~--------~~~~~~l~~~~~~- 377 (751)
T 2xe4_A 314 VRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLV-------D--------HSEDVFMESIAVR- 377 (751)
T ss_dssp SSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEE-------C--------CCSSEEEEEEEEC-
T ss_pred eecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEE-------C--------CCCCcEEEEEEEE-
Confidence 2 3344556666665444444444443 3 455555543 22111 00 0 0111234455554
Q ss_pred CCCEEEEEEecCCe--EEEEEC-------CCCceEEEeeCC-CCCeEEEEE----ccCCCCEEEEEecC---ceEEEEEC
Q psy9598 732 SDRWVITAINFNFQ--IKIWDA-------FNGDLVQVLKGH-TNEVFVLES----HPFDSRVLLSAGHD---GLIIIWDI 794 (1915)
Q Consensus 732 dg~~L~t~s~~Dg~--I~vwD~-------~tg~~i~~l~gH-~~~V~sl~~----sp~dg~~LaSgs~D---G~I~IWdl 794 (1915)
+..|+.....++. |.++++ .++..+..+... ...+..+.+ ++....++++.+.. +.|.++|+
T Consensus 378 -~~~lv~~~~~~g~~~l~~~dl~~~~~~~~~g~~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~ 456 (751)
T 2xe4_A 378 -SNYLVVAGRRAGLTRIWTMMADSQDGVFKAGTGLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSP 456 (751)
T ss_dssp -SSEEEEEEEETTEEEEEEEECCTTTSCCCTTTCCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECT
T ss_pred -CCEEEEEEEeCCEEEEEEEecccccccccCCccceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEEC
Confidence 5566555544775 556665 344413333211 122334433 33334566665543 46777888
Q ss_pred CCCcc
Q psy9598 795 LSSKQ 799 (1915)
Q Consensus 795 ~s~~~ 799 (1915)
.+++.
T Consensus 457 ~~~~~ 461 (751)
T 2xe4_A 457 QDHSR 461 (751)
T ss_dssp TTCCE
T ss_pred CCCcE
Confidence 76654
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=97.84 E-value=0.00042 Score=79.62 Aligned_cols=163 Identities=11% Similarity=-0.004 Sum_probs=109.3
Q ss_pred eeEEEEcCCCCEEEEEeCCC--cEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecC
Q psy9598 666 VDSIQWSHSHLRFVSGSRDG--TALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFN 743 (1915)
Q Consensus 666 V~sl~fspdg~~L~sgs~DG--~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~D 743 (1915)
...|.|+ ++.++++++.+| .|+++|+.+++...... + ........+.+++..|+.+...+
T Consensus 45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~-l----------------~~~~FgeGit~~g~~ly~ltw~~ 106 (262)
T 3nol_A 45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIE-L----------------GKRYFGEGISDWKDKIVGLTWKN 106 (262)
T ss_dssp EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEE-C----------------CTTCCEEEEEEETTEEEEEESSS
T ss_pred cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEe-c----------------CCccceeEEEEeCCEEEEEEeeC
Confidence 5788898 677777777776 89999999998654321 0 01111111223466777777668
Q ss_pred CeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEc
Q psy9598 744 FQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWS 823 (1915)
Q Consensus 744 g~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafS 823 (1915)
+.+.+||..+++.+.++..... -+.++ + ++..|+.+..++.|.++|..+.+. +..+.....+.....+..+.|.
T Consensus 107 ~~v~v~D~~t~~~~~ti~~~~e-G~glt--~-dg~~L~~SdGs~~i~~iDp~T~~v--~~~I~V~~~g~~~~~lNELe~~ 180 (262)
T 3nol_A 107 GLGFVWNIRNLRQVRSFNYDGE-GWGLT--H-NDQYLIMSDGTPVLRFLDPESLTP--VRTITVTAHGEELPELNELEWV 180 (262)
T ss_dssp SEEEEEETTTCCEEEEEECSSC-CCCEE--E-CSSCEEECCSSSEEEEECTTTCSE--EEEEECEETTEECCCEEEEEEE
T ss_pred CEEEEEECccCcEEEEEECCCC-ceEEe--c-CCCEEEEECCCCeEEEEcCCCCeE--EEEEEeccCCccccccceeEEE
Confidence 9999999999999999985332 23444 3 445555555578899999998877 5555532222222445567776
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCCcccccCC
Q psy9598 824 PDGTTCALTDSYGHLLVYGLGGFKRPQNIP 853 (1915)
Q Consensus 824 pdg~~Lasg~~dG~I~Iwdl~s~~~~~~l~ 853 (1915)
+|.+.|..-.++.|.+.|..+++....+.
T Consensus 181 -~G~lyan~w~~~~I~vIDp~tG~V~~~Id 209 (262)
T 3nol_A 181 -DGEIFANVWQTNKIVRIDPETGKVTGIID 209 (262)
T ss_dssp -TTEEEEEETTSSEEEEECTTTCBEEEEEE
T ss_pred -CCEEEEEEccCCeEEEEECCCCcEEEEEE
Confidence 78767666677899999999887765543
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=97.79 E-value=0.00097 Score=90.16 Aligned_cols=198 Identities=15% Similarity=0.090 Sum_probs=113.2
Q ss_pred CCCC-cEEEEEEc-CCCCEEEEEEC-CC----cEEEEECCCC-cEEE-EEeCCCCCEEEEEEeCCCCEEEEEeCC-----
Q psy9598 474 GHLS-AVFCVLFD-KLGEVIVTGAD-DL----LIKLWRARDG-KLLA-TLRGCSGEISDIAIDNRNILLAAGTVD----- 539 (1915)
Q Consensus 474 gH~~-~V~~vafs-pdg~~LaTGs~-Dg----~I~IWd~~tg-~~~~-~l~gH~~~I~~Lafspdg~~LaSgs~D----- 539 (1915)
+|.. .+...+|| |||++||.+.. +| .|+++|+.+| +.+. .+.. ....++|+|||+.|+....+
T Consensus 170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~---~~~~~~WspDg~~l~y~~~d~~~~~ 246 (751)
T 2xe4_A 170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSG---TNGEIVWGPDHTSLFYVTKDETLRE 246 (751)
T ss_dssp TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEE---ECSCCEECSSTTEEEEEEECTTCCE
T ss_pred CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccC---ceeeEEEecCCCEEEEEEECCCCCC
Confidence 5554 78889999 99999886543 23 5999999998 6321 1111 13468899999888777665
Q ss_pred CcEEEEECCCCce--EEEee-cCCCCeEEEEeccCccCCCcEEEEEeC---CCeEEEEecccCcccc--ceeccCccccc
Q psy9598 540 KTIRIWNLQTLAP--ISVLV-GHQGIITGVNFCPLEVNGFNYLASTST---DGCIGFWKYKLDIDIS--KTVFHEPVMFN 611 (1915)
Q Consensus 540 gtIrVWDl~tg~~--~~~l~-~h~~~V~sl~fsp~~~~d~~~L~sgs~---DgtI~iWDl~~~~~~~--~~~~~~~~~~~ 611 (1915)
..|.+|++.++.. ...+. .+.....++.|+|+ +.+|+..+. ...|.++|+.++.... ....
T Consensus 247 ~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpD----g~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~------- 315 (751)
T 2xe4_A 247 NKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAAD----TNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVR------- 315 (751)
T ss_dssp EEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTT----SSEEEEEEECSSCEEEEEEESSSCTTCCCEEESS-------
T ss_pred CEEEEEECCCCchhcEEEEecCCCceEEEEEECCC----CCEEEEEecCCCCceEEEEECCCCCCCceeEEee-------
Confidence 3688899987652 23333 23345678899994 466666553 3467778887652111 1110
Q ss_pred cccCCCCCceEEEEECCCCcEEEEEeCC--C--eEEEEEecCCCCCceeEEeccCCC--CeeEEEEcCCCCEEEEEeCCC
Q psy9598 612 ERIRPGNAHILCSSFSPGGLFLATGSGD--H--HVRVYKMDGVDSPLGILEVEEHSD--KVDSIQWSHSHLRFVSGSRDG 685 (1915)
Q Consensus 612 ~~~~~~~~~V~~l~fspdg~~Lasgs~D--g--~I~IwDl~~~~~~~~i~~l~~h~~--~V~sl~fspdg~~L~sgs~DG 685 (1915)
........++.|+.++.+++....+ + .|.++++.+......+ +..|.. .+..+.+. .+.++++...+|
T Consensus 316 ---~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~--li~~~~~~~l~~~~~~-~~~lv~~~~~~g 389 (751)
T 2xe4_A 316 ---PREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHV--LVDHSEDVFMESIAVR-SNYLVVAGRRAG 389 (751)
T ss_dssp ---CCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCE--EECCCSSEEEEEEEEC-SSEEEEEEEETT
T ss_pred ---cCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceee--EECCCCCcEEEEEEEE-CCEEEEEEEeCC
Confidence 0112344556655555555555443 3 4555565321111110 222333 34555554 334556677788
Q ss_pred cEEEEE
Q psy9598 686 TALIWY 691 (1915)
Q Consensus 686 ~I~IWD 691 (1915)
..+||-
T Consensus 390 ~~~l~~ 395 (751)
T 2xe4_A 390 LTRIWT 395 (751)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 766653
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=97.79 E-value=0.039 Score=77.30 Aligned_cols=325 Identities=13% Similarity=0.110 Sum_probs=169.0
Q ss_pred cEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEE-eCCCCCEEEEEEeCC------CCEEEEEeC-CCcEEEEECCC
Q psy9598 478 AVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATL-RGCSGEISDIAIDNR------NILLAAGTV-DKTIRIWNLQT 549 (1915)
Q Consensus 478 ~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l-~gH~~~I~~Lafspd------g~~LaSgs~-DgtIrVWDl~t 549 (1915)
.|.+++.+ +.+|+.++ ++.|.++.+.++.+.... ..-...|.|+++.+. +.++|.|.. |++|+|+++.+
T Consensus 515 ~I~~As~n--~~~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~ 591 (1158)
T 3ei3_A 515 NISVASCN--SSQVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPS 591 (1158)
T ss_dssp CCCEEEEC--SSEEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTT
T ss_pred EEEEEEeC--CCEEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCC
Confidence 45555544 34666665 678888888766433211 123568999999763 469999997 99999999998
Q ss_pred CceEEEeec-CCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEeccc--CccccceeccCccccccccCCCCCceEEEEE
Q psy9598 550 LAPISVLVG-HQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKL--DIDISKTVFHEPVMFNERIRPGNAHILCSSF 626 (1915)
Q Consensus 550 g~~~~~l~~-h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~--~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~f 626 (1915)
...+....- ......+|.+.... +..+|..|-.||.+..+.+.. +...... ..+. +..++.-..|
T Consensus 592 l~~~~~~~L~~~~~p~si~l~~~~--~~~~L~igl~dG~l~~~~~d~~tg~l~d~r---------~~~L-G~~pv~L~~~ 659 (1158)
T 3ei3_A 592 FELLHKEMLGGEIIPRSILMTTFE--SSHYLLCALGDGALFYFGLNIETGLLSDRK---------KVTL-GTQPTVLRTF 659 (1158)
T ss_dssp CCEEEEEECCSSCCEEEEEEEEET--TEEEEEEEETTSEEEEEEECTTTCCEEEEE---------EEEC-CSSCCEEEEE
T ss_pred CCeEEEEECCCCCCCcEEEEEEeC--CCcEEEEEeCCCeEEEEEEcCCCCccccce---------eEEc-CCCceEEEEE
Confidence 776654321 12345555554322 346899999999987666543 2211100 0011 1223333333
Q ss_pred CCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEE-EcCC--CCEEEEEeCCCcEEEEEccCCceEEeeec
Q psy9598 627 SPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQ-WSHS--HLRFVSGSRDGTALIWYYKCSQWRFIRLD 703 (1915)
Q Consensus 627 spdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~-fspd--g~~L~sgs~DG~I~IWDl~~~~~~~~~~~ 703 (1915)
...|..-+.+..+....+|.-. ....+..+ ....+.+++ |+.. ..-|+.. .++.++|..+...+.....
T Consensus 660 ~~~~~~~V~a~s~rp~liy~~~---~~l~~s~l--~~~~v~~~~~F~se~~~~g~v~~-~~~~LrI~~i~~~~~~~~~-- 731 (1158)
T 3ei3_A 660 RSLSTTNVFACSDRPTVIYSSN---HKLVFSNV--NLKEVNYMCPLNSDGYPDSLALA-NNSTLTIGTIDEIQKLHIR-- 731 (1158)
T ss_dssp ESSSCEEEEEESSSCEEEEESS---SSEEEEEB--SSSCCCEEEEECCSSSTTEEEEE-CSSCEEEEEECCSSSEEEE--
T ss_pred eeCCceeEEEECCCCEEEEEcC---CceEEecc--ChHHhceEeccCcccCCCcEEEE-cCCceEEEEecccCCeeEE--
Confidence 3333322223333444444321 11111111 112333333 5432 1234433 3456888776432211100
Q ss_pred ccccCCCCccccccccccccEEEEEECCCCCEEEEEEe------------------------------------------
Q psy9598 704 MNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAIN------------------------------------------ 741 (1915)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~------------------------------------------ 741 (1915)
.......+..++++|....++++..
T Consensus 732 -------------~ipL~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 798 (1158)
T 3ei3_A 732 -------------TVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHET 798 (1158)
T ss_dssp -------------EEECSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC---------
T ss_pred -------------EEeCCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccccccccccccCchh
Confidence 0001123344444444333222211
Q ss_pred ------cCCeEEEEECCCCceEEEeeCC-CCCeEEEEEccC---CCCEEEEEe----------cCceEEEEECCCCcccc
Q psy9598 742 ------FNFQIKIWDAFNGDLVQVLKGH-TNEVFVLESHPF---DSRVLLSAG----------HDGLIIIWDILSSKQRG 801 (1915)
Q Consensus 742 ------~Dg~I~vwD~~tg~~i~~l~gH-~~~V~sl~~sp~---dg~~LaSgs----------~DG~I~IWdl~s~~~~~ 801 (1915)
.-+.|++.|..+++.+..+.-. ...+.+++.... ...+|+.|. ..|.|.+|++..++.
T Consensus 799 ~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL-- 876 (1158)
T 3ei3_A 799 SFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKL-- 876 (1158)
T ss_dssp -CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEE--
T ss_pred hcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEE--
Confidence 0135888888888877766532 334555553322 246888776 358999999974433
Q ss_pred ceeeeeeecCCCCcceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc
Q psy9598 802 YKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGGFK 847 (1915)
Q Consensus 802 ~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl~s~~ 847 (1915)
..+. .....++|++++-- +|.+||+.+ ..|+||++...+
T Consensus 877 -~lv~---~~~v~g~v~al~~~-~g~Lla~ig--~~l~vy~l~~~~ 915 (1158)
T 3ei3_A 877 -QTVA---EKEVKGAVYSMVEF-NGKLLASIN--STVRLYEWTTEK 915 (1158)
T ss_dssp -EEEE---EEEESSCEEEEEEE-TTEEEEEET--TEEEEEEECTTS
T ss_pred -EEEE---EEEcCCcCEEEeee-CCEEEEEcC--CEEEEEECCCCc
Confidence 2222 11235778877633 454444333 589999998654
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.77 E-value=0.0061 Score=75.41 Aligned_cols=239 Identities=13% Similarity=-0.042 Sum_probs=147.4
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccc
Q psy9598 522 SDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISK 601 (1915)
Q Consensus 522 ~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~ 601 (1915)
+|.+..+.+ +|+.+. ...|+.+++........+. ....+..|+|.+. ++.++++-...+.|..|++.+.... .
T Consensus 80 ~C~~~~~~~-~l~~~~-~~~I~~i~~~~~~~~~~~~-~~~~~~gl~~d~~---~~~ly~~D~~~~~I~r~~~~g~~~~-~ 152 (386)
T 3v65_B 80 SCKALGPEP-VLLFAN-RIDIRQVLPHRSEYTLLLN-NLENAIALDFHHR---RELVFWSDVTLDRILRANLNGSNVE-E 152 (386)
T ss_dssp CEEECSSCC-EEEEEC-BSCEEEECTTSCCCEEEEC-SCSCEEEEEEETT---TTEEEEEETTTTEEEEEETTSCCEE-E
T ss_pred eECCccccc-eeEeec-CccceeeccCCCcEEEEec-CCCccEEEEEecC---CCeEEEEeCCCCcEEEEecCCCCcE-E
Confidence 345555533 444333 3578889988766554444 3455789999973 3456666667788999988765311 1
Q ss_pred eeccCccccccccCCCCCceEEEEECCC-CcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEE
Q psy9598 602 TVFHEPVMFNERIRPGNAHILCSSFSPG-GLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVS 680 (1915)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~V~~l~fspd-g~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~s 680 (1915)
+ .. ........+++.+. +.++++-...+.|.++++++.. ....+.........|++.|.+..|+.
T Consensus 153 ~-~~----------~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~---~~~l~~~~l~~P~giavdp~~g~ly~ 218 (386)
T 3v65_B 153 V-VS----------TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH---RKVLLWQSLEKPRAIALHPMEGTIYW 218 (386)
T ss_dssp E-EC----------SSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCS---CEEEECSSCSCEEEEEEETTTTEEEE
T ss_pred E-Ee----------CCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCc---eEEeecCCCCCCcEEEEEcCCCeEEE
Confidence 1 00 11123456888874 4555566667888888875322 11222333456789999987665554
Q ss_pred Ee-CC-CcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEE
Q psy9598 681 GS-RD-GTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQ 758 (1915)
Q Consensus 681 gs-~D-G~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~ 758 (1915)
+. .. +.|..+++.......+. .......+.|+|++++..|+.+....+.|..+++.......
T Consensus 219 td~~~~~~I~r~~~dG~~~~~~~----------------~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~ 282 (386)
T 3v65_B 219 TDWGNTPRIEASSMDGSGRRIIA----------------DTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKA 282 (386)
T ss_dssp EECSSSCEEEEEETTSCSCEEEE----------------CSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEE
T ss_pred eccCCCCEEEEEeCCCCCcEEEE----------------ECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEE
Confidence 44 33 56777776543321111 01123467899999888888888768899999986544444
Q ss_pred EeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCcc
Q psy9598 759 VLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQ 799 (1915)
Q Consensus 759 ~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~ 799 (1915)
.+........+|++. .+.++++-...+.|..++..++..
T Consensus 283 ~~~~~~~~P~giav~--~~~ly~td~~~~~V~~~~~~~G~~ 321 (386)
T 3v65_B 283 VISQGLPHPFAITVF--EDSLYWTDWHTKSINSANKFTGKN 321 (386)
T ss_dssp EECSSCSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCS
T ss_pred EEECCCCCceEEEEE--CCEEEEeeCCCCeEEEEECCCCcc
Confidence 444444556778873 466777777788888888666655
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=97.76 E-value=0.03 Score=73.46 Aligned_cols=343 Identities=10% Similarity=-0.067 Sum_probs=185.4
Q ss_pred CCCcEEEEEEcCCCCEEEEEE-CCCcEEEEECCCCcE-EEEEeCCCCCEEEEEEeCCCC-EEEEEeCCCcEEEEECCCCc
Q psy9598 475 HLSAVFCVLFDKLGEVIVTGA-DDLLIKLWRARDGKL-LATLRGCSGEISDIAIDNRNI-LLAAGTVDKTIRIWNLQTLA 551 (1915)
Q Consensus 475 H~~~V~~vafspdg~~LaTGs-~Dg~I~IWd~~tg~~-~~~l~gH~~~I~~Lafspdg~-~LaSgs~DgtIrVWDl~tg~ 551 (1915)
....+..|+|++.+..|+.+. ..+.|..+++..... ...+...-.....|++...+. ++++-...+.|.+.++....
T Consensus 38 ~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~ 117 (619)
T 3s94_A 38 GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL 117 (619)
T ss_dssp CCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred CCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCC
Confidence 346688999998766666554 467899999865532 233433335789999999555 45555567899999997654
Q ss_pred eEEEeecCCCCeEEEEeccCccCCCcEEEEEeC--CCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCC
Q psy9598 552 PISVLVGHQGIITGVNFCPLEVNGFNYLASTST--DGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPG 629 (1915)
Q Consensus 552 ~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~--DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspd 629 (1915)
....+........+|++.|.. ..|+.+.. .+.|...++..... ..+ .. ..-.....++++++
T Consensus 118 ~~~l~~~~l~~P~~Iavdp~~----g~ly~tD~g~~~~I~r~~~dG~~~-~~l-~~----------~~~~~P~Glald~~ 181 (619)
T 3s94_A 118 RKVLFWQELDQPRAIALDPSS----GFMYWTDWGEVPKIERAGMDGSSR-FII-IN----------SEIYWPNGLTLDYE 181 (619)
T ss_dssp CEEEECSSCSCCCCEEEETTT----TEEEEEECSSSCEEEEEETTSCSC-EEE-EC----------SSCSSEEEEEEETT
T ss_pred EEEEEeCCCCCCceEEEecCC----CeEEEeccCCCCEEEEEECCCCce-EEE-Ee----------CCCCCCcEEEEEcc
Confidence 433343445567889998843 34444432 35666666553321 111 10 11245788999986
Q ss_pred CcEEEEE-eCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeeccccc-
Q psy9598 630 GLFLATG-SGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTC- 707 (1915)
Q Consensus 630 g~~Lasg-s~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~- 707 (1915)
+..|..+ ...+.|..+++++..... + ..+......+|++..+ ..+++-...+.|...|..++............
T Consensus 182 ~~~LY~aD~~~~~I~~~~~dG~~~~~-~--~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~~~~i~~~~~~p 257 (619)
T 3s94_A 182 EQKLYWADAKLNFIHKSNLDGTNRQA-V--VKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGEGLREIHSDIFSP 257 (619)
T ss_dssp TTEEEEEETTTCCEEEESSSCCEEC------------CCCEEESSS-EEEEECTTTCSEEEEESSSCCCCEECCSCCCCC
T ss_pred CCEEEEEeCCCCeEEEecCCCCccEE-E--EeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCcccEEEecCCCCC
Confidence 5555444 456788888885432211 1 1111223356677655 44555556778888888766532221100000
Q ss_pred ----------CC-CCccccccc----------cccccEEEEEE-----CCC--------CCEEEEEEecCCeEEEEECCC
Q psy9598 708 ----------LP-HTKETSDET----------NKKIKVTMVAW-----DAS--------DRWVITAINFNFQIKIWDAFN 753 (1915)
Q Consensus 708 ----------~~-~~~~~~~~~----------~~~~~V~~va~-----spd--------g~~L~t~s~~Dg~I~vwD~~t 753 (1915)
.+ ......... .......|.|- .++ ..+|+.+. .+.|+..++..
T Consensus 258 ~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~Ll~~~--~~~i~~i~l~~ 335 (619)
T 3s94_A 258 MDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLAR--RTDLRRISLDT 335 (619)
T ss_dssp SEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEEEEEEE--SSCEEEEESSS
T ss_pred cEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCceEEEEEc--ccceEEEecCC
Confidence 00 000000000 00001122221 111 12444443 45677777765
Q ss_pred CceE-EEee-CCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEE
Q psy9598 754 GDLV-QVLK-GHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCAL 831 (1915)
Q Consensus 754 g~~i-~~l~-gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Las 831 (1915)
.... ..+. ..-..+.+|+|.+.++.++++-...+.|+.+++..... . .+. ....+....+++...+..|..
T Consensus 336 ~~~~~~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~--~-~v~----~~~~~~p~GlAvD~~~~~lY~ 408 (619)
T 3s94_A 336 PDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGS--Q-FVV----TAQIAHPDGIAVDWVARNLYW 408 (619)
T ss_dssp TTCCCEECCCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC--E-EEE----CSSCSCCCEEEEETTTTEEEE
T ss_pred CccceeEEeccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCcc--E-EEE----ECCCCCcCceEEecccCcEEE
Confidence 4321 1121 12235788999985566666666688999999876443 1 111 123356778999875555555
Q ss_pred E-eCCCeEEEEeCCCC
Q psy9598 832 T-DSYGHLLVYGLGGF 846 (1915)
Q Consensus 832 g-~~dG~I~Iwdl~s~ 846 (1915)
+ ...+.|.+.++.+.
T Consensus 409 tD~~~~~I~v~~~~G~ 424 (619)
T 3s94_A 409 TDTGTDRIEVTRLNGT 424 (619)
T ss_dssp EETTTTEEEEEETTSC
T ss_pred EeCCCCcEEEEeCCCC
Confidence 5 45688999998765
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=97.76 E-value=0.029 Score=78.64 Aligned_cols=322 Identities=13% Similarity=0.091 Sum_probs=169.2
Q ss_pred CCcEEEEEEcCC------CCEEEEEEC-CCcEEEEECCCCcEEEEEeC-CCCCEEEEEEe--CCCCEEEEEeCCCcEEEE
Q psy9598 476 LSAVFCVLFDKL------GEVIVTGAD-DLLIKLWRARDGKLLATLRG-CSGEISDIAID--NRNILLAAGTVDKTIRIW 545 (1915)
Q Consensus 476 ~~~V~~vafspd------g~~LaTGs~-Dg~I~IWd~~tg~~~~~l~g-H~~~I~~Lafs--pdg~~LaSgs~DgtIrVW 545 (1915)
.+.|.|+++.+. +.++|.|.. |++|+|+++.+.+.+....- ......+|.+. ....+|..|-.||.+..+
T Consensus 553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~ 632 (1158)
T 3ei3_A 553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYF 632 (1158)
T ss_dssp SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEE
T ss_pred CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEE
Confidence 457999999863 479999997 99999999998776654332 12234444443 234588999999987655
Q ss_pred EC--CCCceEEE---eecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCc
Q psy9598 546 NL--QTLAPISV---LVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAH 620 (1915)
Q Consensus 546 Dl--~tg~~~~~---l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (1915)
.+ .+|..... +.| ..+|.-..|... +...++++|..-.+. +... +. +.+. +..+ ..-
T Consensus 633 ~~d~~tg~l~d~r~~~LG-~~pv~L~~~~~~---~~~~V~a~s~rp~li-y~~~-~~----l~~s-~l~~-------~~v 694 (1158)
T 3ei3_A 633 GLNIETGLLSDRKKVTLG-TQPTVLRTFRSL---STTNVFACSDRPTVI-YSSN-HK----LVFS-NVNL-------KEV 694 (1158)
T ss_dssp EECTTTCCEEEEEEEECC-SSCCEEEEEESS---SCEEEEEESSSCEEE-EESS-SS----EEEE-EBSS-------SCC
T ss_pred EEcCCCCccccceeEEcC-CCceEEEEEeeC---CceeEEEECCCCEEE-EEcC-Cc----eEEe-ccCh-------HHh
Confidence 44 45554332 223 334443334321 223444444333333 3222 11 1111 0000 011
Q ss_pred eEEEEECCC--CcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCC-------------
Q psy9598 621 ILCSSFSPG--GLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDG------------- 685 (1915)
Q Consensus 621 V~~l~fspd--g~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG------------- 685 (1915)
-....|+.. ..-++..+ ++.++|..+.... ...+..+ .-...+..|+++|....++.+..+.
T Consensus 695 ~~~~~F~se~~~~g~v~~~-~~~LrI~~i~~~~-~~~~~~i-pL~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~ 771 (1158)
T 3ei3_A 695 NYMCPLNSDGYPDSLALAN-NSTLTIGTIDEIQ-KLHIRTV-PLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALR 771 (1158)
T ss_dssp CEEEEECCSSSTTEEEEEC-SSCEEEEEECCSS-SEEEEEE-ECSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESS
T ss_pred ceEeccCcccCCCcEEEEc-CCceEEEEecccC-CeeEEEE-eCCCCceEEEEcCCCCEEEEEEEeccccccccccchhh
Confidence 233445432 12344333 4569998885432 2223222 2345788899999887766554321
Q ss_pred ------------------------------------cEEEEEccCCceEEeeecccccCCCCccccccccccccEEE---
Q psy9598 686 ------------------------------------TALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTM--- 726 (1915)
Q Consensus 686 ------------------------------------~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~--- 726 (1915)
.|++.|..+.+.. ..........+.+
T Consensus 772 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i---------------~~~~l~~nE~~~sv~~ 836 (1158)
T 3ei3_A 772 PSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVL---------------HAHQFLQNEYALSLVS 836 (1158)
T ss_dssp CCHHHHCSEEEECCCCCC----------CCCEEEEEEEEEEETTTCCEE---------------EEEECCTTEEEEEEEE
T ss_pred hhhhhhhhhhcccccccccccccCchhhcCCceeeEEEEEEeCCCCeEE---------------EEEeCCCCcceEEEEE
Confidence 1112211111100 0000111122333
Q ss_pred EEECCC-CCEEEEEEe---------cCCeEEEEECCCCceEEEee-CCCCCeEEEEEccCCCCEEEEEecCceEEEEECC
Q psy9598 727 VAWDAS-DRWVITAIN---------FNFQIKIWDAFNGDLVQVLK-GHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDIL 795 (1915)
Q Consensus 727 va~spd-g~~L~t~s~---------~Dg~I~vwD~~tg~~i~~l~-gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~ 795 (1915)
+.|..+ ..+|++|+. ..|.|.+|++..+++..... ...++|++|+-- .|.+|++. ...|+||++.
T Consensus 837 v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~--~g~Lla~i--g~~l~vy~l~ 912 (1158)
T 3ei3_A 837 CKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEF--NGKLLASI--NSTVRLYEWT 912 (1158)
T ss_dssp ECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEE--TTEEEEEE--TTEEEEEEEC
T ss_pred EEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeee--CCEEEEEc--CCEEEEEECC
Confidence 334332 467887763 25789999987544322221 346788888754 35444433 4689999997
Q ss_pred CCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q psy9598 796 SSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLG 844 (1915)
Q Consensus 796 s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl~ 844 (1915)
..+. +. ... .....|..+.....|++|++|+.-..|.++.+.
T Consensus 913 ~~~~--L~-~~~----~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~ 954 (1158)
T 3ei3_A 913 TEKE--LR-TEC----NHYNNIMALYLKTKGDFILVGDLMRSVLLLAYK 954 (1158)
T ss_dssp TTSC--EE-EEE----EECCCSCEEEEEEETTEEEEEESSBCEEEEEEE
T ss_pred CCce--EE-EEe----eccccEEEEEEeccCCEEEEEEhhheEEEEEEE
Confidence 6654 33 211 111123333333468899999988888777654
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.76 E-value=0.0043 Score=70.66 Aligned_cols=196 Identities=11% Similarity=0.023 Sum_probs=118.7
Q ss_pred eeeEEecCCC--CcEEEEEEcCCCCEEEEEECC--CcEEEEECCCCcEEEEEeCCCCCE-EEEEEeCCCCEEEEEeCCCc
Q psy9598 467 RQHYVNLGHL--SAVFCVLFDKLGEVIVTGADD--LLIKLWRARDGKLLATLRGCSGEI-SDIAIDNRNILLAAGTVDKT 541 (1915)
Q Consensus 467 ~~~~~l~gH~--~~V~~vafspdg~~LaTGs~D--g~I~IWd~~tg~~~~~l~gH~~~I-~~Lafspdg~~LaSgs~Dgt 541 (1915)
+++..+ -|. .-+..+.|+. +.++.+.+.+ +.|+++|+.+|+.+..+....... -.+++.. +.+.+....++.
T Consensus 10 ~v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~-~~ly~ltw~~~~ 86 (243)
T 3mbr_X 10 RVVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWR-DRLIQLTWRNHE 86 (243)
T ss_dssp EEEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEET-TEEEEEESSSSE
T ss_pred EEEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeC-CEEEEEEeeCCE
Confidence 344444 444 3355889986 5555666654 489999999999999886433221 2344432 334444456899
Q ss_pred EEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCce
Q psy9598 542 IRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHI 621 (1915)
Q Consensus 542 IrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V 621 (1915)
+.+||..+++.+.++.... .=+.+++ ++..|+.+..++.|.++|..+...+..+....... + -..+
T Consensus 87 v~v~D~~tl~~~~ti~~~~-~Gwglt~------dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~------~-~~~l 152 (243)
T 3mbr_X 87 GFVYDLATLTPRARFRYPG-EGWALTS------DDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGR------P-LDNL 152 (243)
T ss_dssp EEEEETTTTEEEEEEECSS-CCCEEEE------CSSCEEEECSSSEEEEECTTTCCEEEEEECEETTE------E-CCCE
T ss_pred EEEEECCcCcEEEEEeCCC-CceEEee------CCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCc------c-cccc
Confidence 9999999999999887433 2245543 23555555668899999999887655554431000 0 0234
Q ss_pred EEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEe--cc-----------CCCCeeEEEEcCCCCEEEEEeC
Q psy9598 622 LCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEV--EE-----------HSDKVDSIQWSHSHLRFVSGSR 683 (1915)
Q Consensus 622 ~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l--~~-----------h~~~V~sl~fspdg~~L~sgs~ 683 (1915)
+.+.+. +|...+....+..|.+.|..+. ..+..+ .+ ...-.++|+|+|++..|++.+.
T Consensus 153 NeLe~~-~G~lyanvw~s~~I~vIDp~tG---~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 153 NELEWV-NGELLANVWLTSRIARIDPASG---KVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp EEEEEE-TTEEEEEETTTTEEEEECTTTC---BEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred eeeEEe-CCEEEEEECCCCeEEEEECCCC---CEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 455554 5554544445667778777332 222222 11 1235689999998776666554
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.75 E-value=0.0073 Score=74.67 Aligned_cols=254 Identities=10% Similarity=-0.016 Sum_probs=150.6
Q ss_pred EEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEE-EEEeCCCcEEEEECCCCceEEEee
Q psy9598 479 VFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILL-AAGTVDKTIRIWNLQTLAPISVLV 557 (1915)
Q Consensus 479 V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~L-aSgs~DgtIrVWDl~tg~~~~~l~ 557 (1915)
.+|.+..+.+ +|+.+. ...|+.+++..+.....+.+ ...+..|+|++.+..| ++-...+.|..|++..+.....+.
T Consensus 79 ~~C~~~~~~~-~l~~~~-~~~I~~i~~~~~~~~~~~~~-~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~ 155 (386)
T 3v65_B 79 RSCKALGPEP-VLLFAN-RIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS 155 (386)
T ss_dssp SCEEECSSCC-EEEEEC-BSCEEEECTTSCCCEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEEC
T ss_pred CeECCccccc-eeEeec-CccceeeccCCCcEEEEecC-CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEe
Confidence 4466666644 444443 35788899877665544443 3458899999765544 555567889999998765544444
Q ss_pred cCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEe
Q psy9598 558 GHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGS 637 (1915)
Q Consensus 558 ~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs 637 (1915)
........|++.+. ++.++++-...+.|.+.++..... ..... ........++++|.+..|+...
T Consensus 156 ~~~~~p~glavd~~---~g~lY~~d~~~~~I~~~~~dg~~~--~~l~~----------~~l~~P~giavdp~~g~ly~td 220 (386)
T 3v65_B 156 TGLESPGGLAVDWV---HDKLYWTDSGTSRIEVANLDGAHR--KVLLW----------QSLEKPRAIALHPMEGTIYWTD 220 (386)
T ss_dssp SSCSCCCCEEEETT---TTEEEEEETTTTEEEECBTTSCSC--EEEEC----------SSCSCEEEEEEETTTTEEEEEE
T ss_pred CCCCCccEEEEEeC---CCeEEEEcCCCCeEEEEeCCCCce--EEeec----------CCCCCCcEEEEEcCCCeEEEec
Confidence 33345577888763 345666666678888888764421 11111 1224568899998665555443
Q ss_pred -CC-CeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEE-eCCCcEEEEEccCCceEEeeecccccCCCCccc
Q psy9598 638 -GD-HHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSG-SRDGTALIWYYKCSQWRFIRLDMNTCLPHTKET 714 (1915)
Q Consensus 638 -~D-g~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sg-s~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~ 714 (1915)
.. +.|..+++++.. .. ......-.....|+|++++..|+.+ +..+.|..+++.......+..
T Consensus 221 ~~~~~~I~r~~~dG~~--~~-~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~------------ 285 (386)
T 3v65_B 221 WGNTPRIEASSMDGSG--RR-IIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVIS------------ 285 (386)
T ss_dssp CSSSCEEEEEETTSCS--CE-EEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEEC------------
T ss_pred cCCCCEEEEEeCCCCC--cE-EEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEE------------
Confidence 34 678888875422 11 1122334457899999766655544 556778888876433221110
Q ss_pred cccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCCCeEEEE
Q psy9598 715 SDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLE 771 (1915)
Q Consensus 715 ~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~ 771 (1915)
........|++ ++..|+.+....+.|..++..+|..+..+.........|+
T Consensus 286 ----~~~~~P~giav--~~~~ly~td~~~~~V~~~~~~~G~~~~~i~~~~~~p~gi~ 336 (386)
T 3v65_B 286 ----QGLPHPFAITV--FEDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDIH 336 (386)
T ss_dssp ----SSCSSEEEEEE--ETTEEEEEETTTTEEEEEETTTCCSCEEEECSCSCCCCEE
T ss_pred ----CCCCCceEEEE--ECCEEEEeeCCCCeEEEEECCCCcceEEEccCCCCCceEE
Confidence 01223456666 3345555555578899998777777766654333333333
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00096 Score=76.67 Aligned_cols=183 Identities=10% Similarity=-0.017 Sum_probs=117.4
Q ss_pred EEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEE--EEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEe
Q psy9598 479 VFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEIS--DIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVL 556 (1915)
Q Consensus 479 V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~--~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l 556 (1915)
...+.|+ ++.++++.+.+|.|+++|+.+|+.+..+ -. .... .|++.. +.+.++...++.+.+||..+++.+.++
T Consensus 57 tqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~-~~~FgeGit~~g-~~Ly~ltw~~~~v~V~D~~Tl~~~~ti 132 (268)
T 3nok_A 57 TQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RL-GNIFAEGLASDG-ERLYQLTWTEGLLFTWSGMPPQRERTT 132 (268)
T ss_dssp EEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-EC-TTCCEEEEEECS-SCEEEEESSSCEEEEEETTTTEEEEEE
T ss_pred cceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CC-CCcceeEEEEeC-CEEEEEEccCCEEEEEECCcCcEEEEE
Confidence 4678888 4667777778889999999999988777 22 2333 355543 344444556899999999999999988
Q ss_pred ecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEE
Q psy9598 557 VGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATG 636 (1915)
Q Consensus 557 ~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasg 636 (1915)
... ..-+.+++ ++..|+.+..++.|.++|..+.+.+..+....... .-..++.+.|. +|...+..
T Consensus 133 ~~~-~eGwGLt~------Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~-------~v~~lNeLe~~-dG~lyanv 197 (268)
T 3nok_A 133 RYS-GEGWGLCY------WNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQ-------PVELINELECA-NGVIYANI 197 (268)
T ss_dssp ECS-SCCCCEEE------ETTEEEEECSSSEEEEECTTTCCEEEEEECEETTE-------ECCCEEEEEEE-TTEEEEEE
T ss_pred eCC-CceeEEec------CCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCc-------ccccccccEEe-CCEEEEEE
Confidence 743 22244443 23566666678999999999887655554431000 01235566666 66655555
Q ss_pred eCCCeEEEEEecCCCCCceeEEecc-------------CCCCeeEEEEcCCCCEEEEEeC
Q psy9598 637 SGDHHVRVYKMDGVDSPLGILEVEE-------------HSDKVDSIQWSHSHLRFVSGSR 683 (1915)
Q Consensus 637 s~Dg~I~IwDl~~~~~~~~i~~l~~-------------h~~~V~sl~fspdg~~L~sgs~ 683 (1915)
..+..|.+.|..+. ..+..+.. -..-.+.|+|+|++..|++.+.
T Consensus 198 w~s~~I~vIDp~TG---~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 198 WHSSDVLEIDPATG---TVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp TTCSEEEEECTTTC---BEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred CCCCeEEEEeCCCC---cEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 46778888887432 22222211 1235689999998765555443
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=97.73 E-value=0.031 Score=66.89 Aligned_cols=237 Identities=11% Similarity=-0.029 Sum_probs=140.4
Q ss_pred EEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEE-EEEeCCCcEEEEECCC----CceEEEeecCCCCeE
Q psy9598 490 VIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILL-AAGTVDKTIRIWNLQT----LAPISVLVGHQGIIT 564 (1915)
Q Consensus 490 ~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~L-aSgs~DgtIrVWDl~t----g~~~~~l~~h~~~V~ 564 (1915)
+|+.+.. ..|+..++.+......+. ....+..++|++.+..| ++-...+.|..+++.+ ......+........
T Consensus 3 ~ll~~~~-~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 80 (316)
T 1ijq_A 3 YLFFTNR-HEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 80 (316)
T ss_dssp EEEEECB-SSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred EEEEECC-CeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcC
Confidence 3444433 468999998876655554 34567899999865544 5555678999999876 222223333334567
Q ss_pred EEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeC-C-CeE
Q psy9598 565 GVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSG-D-HHV 642 (1915)
Q Consensus 565 sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~-D-g~I 642 (1915)
+|++.+. ++.++++-...+.|.++++..... ..+ .. ........++++|.+..|+.+.. . +.|
T Consensus 81 glavd~~---~~~ly~~d~~~~~I~~~~~~g~~~-~~~-~~----------~~~~~P~~iavdp~~g~ly~~d~~~~~~I 145 (316)
T 1ijq_A 81 GLAVDWI---HSNIYWTDSVLGTVSVADTKGVKR-KTL-FR----------ENGSKPRAIVVDPVHGFMYWTDWGTPAKI 145 (316)
T ss_dssp EEEEETT---TTEEEEEETTTTEEEEEETTSSSE-EEE-EE----------CTTCCEEEEEEETTTTEEEEEECSSSCEE
T ss_pred EEEEeec---CCeEEEEECCCCEEEEEeCCCCce-EEE-EE----------CCCCCcceEEeCCCCCEEEEEccCCCCeE
Confidence 8888763 235666667788999998865421 111 11 11245688999986555554443 3 688
Q ss_pred EEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEE-eCCCcEEEEEccCCceEEeeecccccCCCCcccccccccc
Q psy9598 643 RVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSG-SRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKK 721 (1915)
Q Consensus 643 ~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sg-s~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 721 (1915)
..+++++.. ... .....-.....|+|++++..|+.+ +..+.|..+|+.......+.. . ....
T Consensus 146 ~~~~~dG~~--~~~-~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~-~-------------~~~~ 208 (316)
T 1ijq_A 146 KKGGLNGVD--IYS-LVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILE-D-------------EKRL 208 (316)
T ss_dssp EEEETTSCC--EEE-EECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEE-C-------------TTTT
T ss_pred EEEcCCCCC--eEE-EEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEee-c-------------CCcc
Confidence 888874322 111 112233567899999877666554 456789999987543222110 0 0011
Q ss_pred ccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeC
Q psy9598 722 IKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKG 762 (1915)
Q Consensus 722 ~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~g 762 (1915)
.....+++. +..|+.+....+.|..++..+|+.+..+..
T Consensus 209 ~~P~giav~--~~~ly~~d~~~~~V~~~~~~~g~~~~~i~~ 247 (316)
T 1ijq_A 209 AHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNLLAE 247 (316)
T ss_dssp SSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCCCEEEEC
T ss_pred CCcEEEEEE--CCEEEEEECCCCeEEEEeCCCCcceEEEec
Confidence 234556664 345665655578999999888876666643
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.72 E-value=0.0054 Score=70.82 Aligned_cols=211 Identities=9% Similarity=0.105 Sum_probs=132.1
Q ss_pred EEecCCCCcEEEEEEcCCCCEEE-EEECCCcEEEEECCCCcEEEEEe-CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEEC
Q psy9598 470 YVNLGHLSAVFCVLFDKLGEVIV-TGADDLLIKLWRARDGKLLATLR-GCSGEISDIAIDNRNILLAAGTVDKTIRIWNL 547 (1915)
Q Consensus 470 ~~l~gH~~~V~~vafspdg~~La-TGs~Dg~I~IWd~~tg~~~~~l~-gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl 547 (1915)
+.|.|=.+.+..++|+|++..|+ +...++.|...|+. |+.+..+. +-....-.|++.+++.++++.-.++.|.++++
T Consensus 20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v 98 (255)
T 3qqz_A 20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISL 98 (255)
T ss_dssp EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEE
T ss_pred eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEc
Confidence 46777778899999999766555 46678899999987 88888774 22356788999999887777656788999988
Q ss_pred CCCce---EEEee------cCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCC
Q psy9598 548 QTLAP---ISVLV------GHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGN 618 (1915)
Q Consensus 548 ~tg~~---~~~l~------~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~ 618 (1915)
..... +.... .+.....+|+|.|.. +.|+++.......+|.+..-.....+.......+.. ....
T Consensus 99 ~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~----~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~--~~~~ 172 (255)
T 3qqz_A 99 TPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQD----HTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQR--QFTL 172 (255)
T ss_dssp CTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTT----TEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHH--TCCS
T ss_pred CCCCeeeeeeeeccccccccccCCcceEEEeCCC----CEEEEEECcCCceEEEEcccccCCceeeecchhhcc--cccc
Confidence 65442 22221 123456899999943 566666665556666654210000011000000000 0112
Q ss_pred CceEEEEECCC-CcEEEEEeCCCeEEEEEecCCCCCceeEEecc-C------CCCeeEEEEcCCCCEEEEEeCCCcEEEE
Q psy9598 619 AHILCSSFSPG-GLFLATGSGDHHVRVYKMDGVDSPLGILEVEE-H------SDKVDSIQWSHSHLRFVSGSRDGTALIW 690 (1915)
Q Consensus 619 ~~V~~l~fspd-g~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~-h------~~~V~sl~fspdg~~L~sgs~DG~I~IW 690 (1915)
..+.+++++|. +.+++.......|.++|..+ .......+.. . -..--.|+|.++|+++++ +.-..+.+|
T Consensus 173 ~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g--~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f 249 (255)
T 3qqz_A 173 DDVSGAEFNQQKNTLLVLSHESRALQEVTLVG--EVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRF 249 (255)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEECTTC--CEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEE
T ss_pred CCceeEEEcCCCCeEEEEECCCCeEEEEcCCC--CEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEE
Confidence 45688999995 55666667778888898743 2333444442 1 125689999999985555 565555444
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.70 E-value=0.015 Score=67.03 Aligned_cols=221 Identities=11% Similarity=0.018 Sum_probs=134.6
Q ss_pred EEeCCCCCEEEEEEeCCCCEEE-EEeCCCcEEEEECCCCceEEEee-cCCCCeEEEEeccCccCCCcEEEEEeCCCeEEE
Q psy9598 513 TLRGCSGEISDIAIDNRNILLA-AGTVDKTIRIWNLQTLAPISVLV-GHQGIITGVNFCPLEVNGFNYLASTSTDGCIGF 590 (1915)
Q Consensus 513 ~l~gH~~~I~~Lafspdg~~La-Sgs~DgtIrVWDl~tg~~~~~l~-~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~i 590 (1915)
.+.|-...+..|+|+|++..|+ +...++.|...|+. +..+..+. +-....-.|++.+ ++.++++.-.++.+.+
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~----~g~~~vs~E~~~~l~~ 95 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIG----DNQFVISDERDYAIYV 95 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECS----TTEEEEEETTTTEEEE
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeC----CCEEEEEECCCCcEEE
Confidence 4567777899999999866554 56678899999998 88877764 2235678888876 4466666667788999
Q ss_pred EecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEe-------ccCC
Q psy9598 591 WKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEV-------EEHS 663 (1915)
Q Consensus 591 WDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l-------~~h~ 663 (1915)
+++.....+...... .+.......+...-.++|+|.+..|+++.......||.+++......+..+ ..+.
T Consensus 96 ~~v~~~~~i~~~~~~---~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~ 172 (255)
T 3qqz_A 96 ISLTPNSEVKILKKI---KIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTL 172 (255)
T ss_dssp EEECTTCCEEEEEEE---ECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCS
T ss_pred EEcCCCCeeeeeeee---ccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhcccccc
Confidence 988765431111111 000011234566899999999877777776666667776432111111111 1134
Q ss_pred CCeeEEEEcCCCC-EEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEec
Q psy9598 664 DKVDSIQWSHSHL-RFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINF 742 (1915)
Q Consensus 664 ~~V~sl~fspdg~-~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~ 742 (1915)
..+.+|+++|... +++.+.....|.++|..... +... .+.... .........--.|+|+++|+. ++++.
T Consensus 173 ~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~~-~~~~-~L~~g~------~~l~~~~~qpEGia~d~~G~l-yIvsE- 242 (255)
T 3qqz_A 173 DDVSGAEFNQQKNTLLVLSHESRALQEVTLVGEV-IGEM-SLTKGS------RGLSHNIKQAEGVAMDASGNI-YIVSE- 242 (255)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEECTTCCE-EEEE-ECSTTG------GGCSSCCCSEEEEEECTTCCE-EEEET-
T ss_pred CCceeEEEcCCCCeEEEEECCCCeEEEEcCCCCE-EEEE-EcCCcc------CCcccccCCCCeeEECCCCCE-EEEcC-
Confidence 4678999998755 45555566778888876542 2211 111100 011112345677999999974 44455
Q ss_pred CCeEEEEEC
Q psy9598 743 NFQIKIWDA 751 (1915)
Q Consensus 743 Dg~I~vwD~ 751 (1915)
.+.+++|.-
T Consensus 243 ~n~~y~f~~ 251 (255)
T 3qqz_A 243 PNRFYRFTP 251 (255)
T ss_dssp TTEEEEEEC
T ss_pred CceEEEEEe
Confidence 566777654
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00079 Score=77.35 Aligned_cols=164 Identities=10% Similarity=-0.039 Sum_probs=112.8
Q ss_pred CeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCC
Q psy9598 665 KVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNF 744 (1915)
Q Consensus 665 ~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg 744 (1915)
....|.|+ ++.++++++.+|.|+++|+.+++..... +. ...-.-.+++ ++..|+.+...++
T Consensus 56 ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~--l~--------------~~~FgeGit~--~g~~Ly~ltw~~~ 116 (268)
T 3nok_A 56 FTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME--RL--------------GNIFAEGLAS--DGERLYQLTWTEG 116 (268)
T ss_dssp CEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE--EC--------------TTCCEEEEEE--CSSCEEEEESSSC
T ss_pred ccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE--CC--------------CCcceeEEEE--eCCEEEEEEccCC
Confidence 35788887 4667778888899999999998854322 10 0001112344 4556666666689
Q ss_pred eEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcC
Q psy9598 745 QIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSP 824 (1915)
Q Consensus 745 ~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSp 824 (1915)
.+.+||..+++.+.++.... .-+.|++ ++..|+.+..++.|.++|..+.+. +..+.....+.....+..+.|.
T Consensus 117 ~v~V~D~~Tl~~~~ti~~~~-eGwGLt~---Dg~~L~vSdGs~~l~~iDp~T~~v--~~~I~V~~~g~~v~~lNeLe~~- 189 (268)
T 3nok_A 117 LLFTWSGMPPQRERTTRYSG-EGWGLCY---WNGKLVRSDGGTMLTFHEPDGFAL--VGAVQVKLRGQPVELINELECA- 189 (268)
T ss_dssp EEEEEETTTTEEEEEEECSS-CCCCEEE---ETTEEEEECSSSEEEEECTTTCCE--EEEEECEETTEECCCEEEEEEE-
T ss_pred EEEEEECCcCcEEEEEeCCC-ceeEEec---CCCEEEEECCCCEEEEEcCCCCeE--EEEEEeCCCCcccccccccEEe-
Confidence 99999999999999998532 2245553 556666666688999999999887 6665533333333456777877
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCcccccCCC
Q psy9598 825 DGTTCALTDSYGHLLVYGLGGFKRPQNIPR 854 (1915)
Q Consensus 825 dg~~Lasg~~dG~I~Iwdl~s~~~~~~l~~ 854 (1915)
+|.++|..-.++.|.+.|..+++....+..
T Consensus 190 dG~lyanvw~s~~I~vIDp~TG~V~~~Idl 219 (268)
T 3nok_A 190 NGVIYANIWHSSDVLEIDPATGTVVGVIDA 219 (268)
T ss_dssp TTEEEEEETTCSEEEEECTTTCBEEEEEEC
T ss_pred CCEEEEEECCCCeEEEEeCCCCcEEEEEEC
Confidence 777666666778999999999887765543
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=97.60 E-value=0.026 Score=67.66 Aligned_cols=231 Identities=9% Similarity=-0.078 Sum_probs=136.2
Q ss_pred CeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCc-EEEEEeCCCeEEEEEecCCCC-CceeEEeccCC
Q psy9598 586 GCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGL-FLATGSGDHHVRVYKMDGVDS-PLGILEVEEHS 663 (1915)
Q Consensus 586 gtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~-~Lasgs~Dg~I~IwDl~~~~~-~~~i~~l~~h~ 663 (1915)
..|+..|+.+....... .....+..++|++.+. ++++....+.|..+++.+... ......+....
T Consensus 10 ~~I~~i~~~~~~~~~~~-------------~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~ 76 (316)
T 1ijq_A 10 HEVRKMTLDRSEYTSLI-------------PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI 76 (316)
T ss_dssp SSEEEEETTSCCCEEEE-------------CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSC
T ss_pred CeEEEEECCCcceEehh-------------cCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCC
Confidence 45888888765421111 1124578999998654 555555678999999854110 01111122233
Q ss_pred CCeeEEEEcCCCC-EEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEec
Q psy9598 664 DKVDSIQWSHSHL-RFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINF 742 (1915)
Q Consensus 664 ~~V~sl~fspdg~-~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~ 742 (1915)
....+|++.+.+. ++++-...+.|.++++.......+.. ........++++|.+.+|+.+...
T Consensus 77 ~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~----------------~~~~~P~~iavdp~~g~ly~~d~~ 140 (316)
T 1ijq_A 77 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR----------------ENGSKPRAIVVDPVHGFMYWTDWG 140 (316)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEE----------------CTTCCEEEEEEETTTTEEEEEECS
T ss_pred CCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEE----------------CCCCCcceEEeCCCCCEEEEEccC
Confidence 4567899986544 45555677889999887543222110 012345789999988877777653
Q ss_pred C-CeEEEEECCCCceEEEe-eCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEE
Q psy9598 743 N-FQIKIWDAFNGDLVQVL-KGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDG 820 (1915)
Q Consensus 743 D-g~I~vwD~~tg~~i~~l-~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~v 820 (1915)
. +.|..+++. |.....+ ...-.....|++++..+.++++-+..+.|..+|+..... ..+.. ..........+
T Consensus 141 ~~~~I~~~~~d-G~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~---~~~~~--~~~~~~~P~gi 214 (316)
T 1ijq_A 141 TPAKIKKGGLN-GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR---KTILE--DEKRLAHPFSL 214 (316)
T ss_dssp SSCEEEEEETT-SCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC---EEEEE--CTTTTSSEEEE
T ss_pred CCCeEEEEcCC-CCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCce---EEEee--cCCccCCcEEE
Confidence 3 689888875 4444433 233456789999984455555556678999999975332 22221 11122345677
Q ss_pred EEcCCCCEEEEEeCCCeEEEEeCCCCcccccC
Q psy9598 821 KWSPDGTTCALTDSYGHLLVYGLGGFKRPQNI 852 (1915)
Q Consensus 821 afSpdg~~Lasg~~dG~I~Iwdl~s~~~~~~l 852 (1915)
++. .+.++++-...+.|..++..+++....+
T Consensus 215 av~-~~~ly~~d~~~~~V~~~~~~~g~~~~~i 245 (316)
T 1ijq_A 215 AVF-EDKVFWTDIINEAIFSANRLTGSDVNLL 245 (316)
T ss_dssp EEE-TTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred EEE-CCEEEEEECCCCeEEEEeCCCCcceEEE
Confidence 774 3455555556778999988766654443
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.58 E-value=0.014 Score=73.11 Aligned_cols=252 Identities=9% Similarity=-0.032 Sum_probs=135.9
Q ss_pred CEEEEEEeC-CCCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeC-CC----eEEEEec
Q psy9598 520 EISDIAIDN-RNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTST-DG----CIGFWKY 593 (1915)
Q Consensus 520 ~I~~Lafsp-dg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~-Dg----tI~iWDl 593 (1915)
....|+|+| ++..|+.+...+.|+++|+.++.... +.........|+|++. +++|+.+.. ++ .+.+++.
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~-~~~~~~~P~~ia~d~~----G~~lyvad~~~~~~~~~v~~~~~ 212 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVST-VYSGLSKVRTICWTHE----ADSMIITNDQNNNDRPNNYILTR 212 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEE-EECCCSCEEEEEECTT----SSEEEEEECCSCTTSEEEEEEEG
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEE-EecCCCCcceEEEeCC----CCEEEEEeCCCCcccceEEEEeC
Confidence 457899998 35556665555889999998766444 3334566889999984 365555543 22 2333332
Q ss_pred ccCccccceeccCccccccccCCCCCceEEEEECC-CCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEc
Q psy9598 594 KLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSP-GGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWS 672 (1915)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fsp-dg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fs 672 (1915)
.+.......+. ......+++++| +|.++++-..++.|..|+..+.. ...+.... .......|+|+
T Consensus 213 -~g~~~~~~~l~-----------~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~-~~~~~~~~-~~~~P~gia~~ 278 (430)
T 3tc9_A 213 -ESGFKVITELT-----------KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQE-TTPLFTIQ-DSGWEFHIQFH 278 (430)
T ss_dssp -GGTSCSEEEEE-----------ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTE-EEEEEECS-SSSCCEEEEEC
T ss_pred -CCceeeeeeec-----------cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCc-EEEEEEcC-CCCcceeEEEc
Confidence 22211000000 013356788999 67777776678899999984321 11122221 22456789999
Q ss_pred CCCCE-EEEEeCCCcEEEEEccCC--ce--EEeeecccccCCCCccccccccccccEE-EEEEC--------CCCCEEEE
Q psy9598 673 HSHLR-FVSGSRDGTALIWYYKCS--QW--RFIRLDMNTCLPHTKETSDETNKKIKVT-MVAWD--------ASDRWVIT 738 (1915)
Q Consensus 673 pdg~~-L~sgs~DG~I~IWDl~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~V~-~va~s--------pdg~~L~t 738 (1915)
|+|++ +++-...+.|..++.... .. ........ ..............-.... .+++. ++| .|++
T Consensus 279 pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~-g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g-~lyv 356 (430)
T 3tc9_A 279 PSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQ-GAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEY-DFYF 356 (430)
T ss_dssp TTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECT-TCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCE-EEEE
T ss_pred CCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccC-CCCCCCCCCCcceEeCCCcceEEEccccccccCCCC-eEEE
Confidence 99995 455556788999887642 11 00110000 0000000000000111222 45553 334 4555
Q ss_pred EEecCCeEEEEECCCCceEEEeeCC---------C---------CCeEEEEEccCCCCEEEEEecCceEEEEEC
Q psy9598 739 AINFNFQIKIWDAFNGDLVQVLKGH---------T---------NEVFVLESHPFDSRVLLSAGHDGLIIIWDI 794 (1915)
Q Consensus 739 ~s~~Dg~I~vwD~~tg~~i~~l~gH---------~---------~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl 794 (1915)
+....+.|+.++ .+|...... +. . .....|++.|.++.++++-...+.|+.+++
T Consensus 357 aD~~n~~I~~i~-~~G~v~~~~-g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~ 428 (430)
T 3tc9_A 357 CDRENHCIRILT-PQGRVTTFA-GRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGY 428 (430)
T ss_dssp EEGGGTEEEEEC-TTSEEEEEE-ECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred EECCCcEEEEEC-CCCcEEEEE-eCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEcc
Confidence 555478899998 356443333 21 1 146788888733555555555667777665
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.56 E-value=0.027 Score=71.09 Aligned_cols=275 Identities=10% Similarity=0.000 Sum_probs=148.5
Q ss_pred cEEEEEEcC-C-CCEEEEEECCCcEEEEECCCCcEEEEEeCC---CCCEEEEEE-------eCCCCEEEEEeCCC-----
Q psy9598 478 AVFCVLFDK-L-GEVIVTGADDLLIKLWRARDGKLLATLRGC---SGEISDIAI-------DNRNILLAAGTVDK----- 540 (1915)
Q Consensus 478 ~V~~vafsp-d-g~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH---~~~I~~Laf-------spdg~~LaSgs~Dg----- 540 (1915)
....|+|+| + ++++++....+.|++.|+.++.+...+... ......|+| +++|.+|+++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 356899998 3 444444444567999999887766555432 235899999 99999666665443
Q ss_pred --cEEEEECCC-CceE-----EEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecc-------cCccccceecc
Q psy9598 541 --TIRIWNLQT-LAPI-----SVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYK-------LDIDISKTVFH 605 (1915)
Q Consensus 541 --tIrVWDl~t-g~~~-----~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~-------~~~~~~~~~~~ 605 (1915)
.|.+.+... +... ..+.. -....+++++|. ++.++++-..++.|..+|+. ++.........
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~---~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~ 295 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPI---NGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKN 295 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTT---TCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGG
T ss_pred CceEEEEecCCCCceeecccceeecc-CCCceEEEEcCC---CCeEEEEECCCCEEEEEecccccccccCceeecccccc
Confidence 266665443 2221 22221 123457788873 35667777788899999987 44320000000
Q ss_pred Ccccccc-ccCCCCCceEEEEECCCCcE-EEEEeCCCeEEEEEecCCCCC----ceeEEeccCC------------CCee
Q psy9598 606 EPVMFNE-RIRPGNAHILCSSFSPGGLF-LATGSGDHHVRVYKMDGVDSP----LGILEVEEHS------------DKVD 667 (1915)
Q Consensus 606 ~~~~~~~-~~~~~~~~V~~l~fspdg~~-Lasgs~Dg~I~IwDl~~~~~~----~~i~~l~~h~------------~~V~ 667 (1915)
..-.+.. ...+.....+.++|+|+|++ +++-+..+.|+.++.+..... ..+.-..+.. ....
T Consensus 296 ~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~ 375 (496)
T 3kya_A 296 NPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPC 375 (496)
T ss_dssp CTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEE
T ss_pred cccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCe
Confidence 0000000 00122345679999999995 455566788999887542211 1111110111 1233
Q ss_pred -EEEEc-------CCCCEEEEEeCCCcEEEEEccCCceEEeeeccccc------CC-CCccc-cccccccccEEEEEECC
Q psy9598 668 -SIQWS-------HSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTC------LP-HTKET-SDETNKKIKVTMVAWDA 731 (1915)
Q Consensus 668 -sl~fs-------pdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~------~~-~~~~~-~~~~~~~~~V~~va~sp 731 (1915)
.++.. .+|.++++-+..+.|+.++. .+.... ....... .. +...- ......-.....|++++
T Consensus 376 ~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~-~G~v~T-iaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~ 453 (496)
T 3kya_A 376 QGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTP-EGIVST-YAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDD 453 (496)
T ss_dssp EEEEEECTTCCSSCCEEEEEEEGGGTEEEEECT-TCBEEE-EEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEET
T ss_pred EEEEEccccccccCCCeEEEEECCCCEEEEEeC-CCCEEE-EecccccccccCccccccCCCCchhhhhcCCCcEEEEEC
Confidence 44554 45666677677788888873 443222 1111000 00 00000 01111234567899999
Q ss_pred CCCEEEEEEecCCeEEEEECCCCceEE
Q psy9598 732 SDRWVITAINFNFQIKIWDAFNGDLVQ 758 (1915)
Q Consensus 732 dg~~L~t~s~~Dg~I~vwD~~tg~~i~ 758 (1915)
++..|+++...++.|+.+++....+++
T Consensus 454 ~~g~lyVaD~~N~rIrki~~~~~~~~~ 480 (496)
T 3kya_A 454 VKEMFYVHDQVGHTIRTISMEQEENVA 480 (496)
T ss_dssp TTTEEEEEETTTTEEEEEEECCCC---
T ss_pred CCCEEEEEeCCCCEEEEEECCCCcccc
Confidence 755666666658899999887655544
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.56 E-value=0.0043 Score=70.66 Aligned_cols=165 Identities=13% Similarity=-0.031 Sum_probs=109.2
Q ss_pred CCeeEEEEcCCCCEEEEEeCCC--cEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEe
Q psy9598 664 DKVDSIQWSHSHLRFVSGSRDG--TALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAIN 741 (1915)
Q Consensus 664 ~~V~sl~fspdg~~L~sgs~DG--~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~ 741 (1915)
.....|.|+. +.++.+++.+| .|+++|+.+++......- + .......+...+..|+....
T Consensus 21 ~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l-----~------------~~~fgeGi~~~~~~ly~ltw 82 (243)
T 3mbr_X 21 AFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEV-----P------------PPYFGAGIVAWRDRLIQLTW 82 (243)
T ss_dssp CCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEEC-----C------------TTCCEEEEEEETTEEEEEES
T ss_pred cccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeC-----C------------CCcceeEEEEeCCEEEEEEe
Confidence 3467899986 55666666654 899999999986543210 0 01111112223566777776
Q ss_pred cCCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEE
Q psy9598 742 FNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGK 821 (1915)
Q Consensus 742 ~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~va 821 (1915)
.++.+.+||..+++.+.++..... -+.|++ ++..|+.+..++.|.++|..+.+. +..+.....+.....+..+.
T Consensus 83 ~~~~v~v~D~~tl~~~~ti~~~~~-Gwglt~---dg~~L~vSdgs~~l~~iDp~t~~~--~~~I~V~~~g~~~~~lNeLe 156 (243)
T 3mbr_X 83 RNHEGFVYDLATLTPRARFRYPGE-GWALTS---DDSHLYMSDGTAVIRKLDPDTLQQ--VGSIKVTAGGRPLDNLNELE 156 (243)
T ss_dssp SSSEEEEEETTTTEEEEEEECSSC-CCEEEE---CSSCEEEECSSSEEEEECTTTCCE--EEEEECEETTEECCCEEEEE
T ss_pred eCCEEEEEECCcCcEEEEEeCCCC-ceEEee---CCCEEEEECCCCeEEEEeCCCCeE--EEEEEEccCCcccccceeeE
Confidence 699999999999999999984432 245553 444444445588999999999877 66655333333334566677
Q ss_pred EcCCCCEEEEEeCCCeEEEEeCCCCcccccCC
Q psy9598 822 WSPDGTTCALTDSYGHLLVYGLGGFKRPQNIP 853 (1915)
Q Consensus 822 fSpdg~~Lasg~~dG~I~Iwdl~s~~~~~~l~ 853 (1915)
|. +|..+|..-.+..|.+.|..+++....+.
T Consensus 157 ~~-~G~lyanvw~s~~I~vIDp~tG~V~~~id 187 (243)
T 3mbr_X 157 WV-NGELLANVWLTSRIARIDPASGKVVAWID 187 (243)
T ss_dssp EE-TTEEEEEETTTTEEEEECTTTCBEEEEEE
T ss_pred Ee-CCEEEEEECCCCeEEEEECCCCCEEEEEE
Confidence 66 77766666567799999999888765554
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=97.54 E-value=0.021 Score=71.69 Aligned_cols=253 Identities=8% Similarity=-0.001 Sum_probs=134.5
Q ss_pred CEEEEEEeCC--CCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCC---Ce-EEEEec
Q psy9598 520 EISDIAIDNR--NILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTD---GC-IGFWKY 593 (1915)
Q Consensus 520 ~I~~Lafspd--g~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~D---gt-I~iWDl 593 (1915)
....|+|+++ +..|+.+...+.|+.+|+.++..... ........+|+|++.+ .++++.... .. +..++.
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~-~~~~~~P~giavd~dG----~lyVad~~~~~~~~gv~~~~~ 214 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIK-TTNIGQCADVNFTLNG----DMVVVDDQSSDTNTGIYLFTR 214 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEE-CCCCSCEEEEEECTTC----CEEEEECCSCTTSEEEEEECG
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEe-ecCCCCccEEEECCCC----CEEEEcCCCCcccceEEEEEC
Confidence 4578999984 34455554448999999987765544 3445568899999843 544444321 11 222322
Q ss_pred ccCccccceeccCccccccccCCCCCceEEEEECC-CCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEc
Q psy9598 594 KLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSP-GGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWS 672 (1915)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fsp-dg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fs 672 (1915)
..+. ...... ........+++++ +|.+.++-..++.|+.++.........+... +....-..|+|+
T Consensus 215 ~~~~-~~~~~~-----------~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~-~~~~~~~~ia~d 281 (433)
T 4hw6_A 215 ASGF-TERLSL-----------CNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMM-DTKGSNFHIVWH 281 (433)
T ss_dssp GGTT-CCEEEE-----------EECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEEC-SCCSSCEEEEEC
T ss_pred CCCe-eccccc-----------cccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEecc-CCCCCcccEEEe
Confidence 2111 000000 0113345688999 6766666667788888887422110112111 122233579999
Q ss_pred CCCCEE-EEEeCCCcEEEEEccC--CceE--EeeecccccCCCCccccccccccccEEEEEE---------CCCCCEEEE
Q psy9598 673 HSHLRF-VSGSRDGTALIWYYKC--SQWR--FIRLDMNTCLPHTKETSDETNKKIKVTMVAW---------DASDRWVIT 738 (1915)
Q Consensus 673 pdg~~L-~sgs~DG~I~IWDl~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~---------spdg~~L~t 738 (1915)
|+|.+| ++-...+.|..+++.. +... ....... ..............-.....+++ ..+|.++ +
T Consensus 282 pdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~-g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~ly-v 359 (433)
T 4hw6_A 282 PTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQH-SSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFY-F 359 (433)
T ss_dssp TTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECT-TCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEE-E
T ss_pred CCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecC-CCCccCCCcccceEEcCCccEEEEccccccccCCCCcEE-E
Confidence 999955 4555668898888653 2211 0000000 00000000000112234567888 6666544 4
Q ss_pred EEecCCeEEEEECCCCceEEEeeCCC------------------CCeEEEEEccCCCCEEEEEecCceEEEEEC
Q psy9598 739 AINFNFQIKIWDAFNGDLVQVLKGHT------------------NEVFVLESHPFDSRVLLSAGHDGLIIIWDI 794 (1915)
Q Consensus 739 ~s~~Dg~I~vwD~~tg~~i~~l~gH~------------------~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl 794 (1915)
+....+.|++++. +|.. .++.+.. .....|++.|.++.++++=...+.|+.+++
T Consensus 360 aD~~n~~I~~~~~-~G~v-~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~ 431 (433)
T 4hw6_A 360 CDRDSHTVRVLTP-EGRV-TTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAP 431 (433)
T ss_dssp EETTTTEEEEECT-TSEE-EEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred EECCCCEEEEECC-CCCE-EEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEec
Confidence 4444889999985 5643 3333221 135678888436666666556667777665
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=97.53 E-value=0.033 Score=66.77 Aligned_cols=226 Identities=13% Similarity=-0.005 Sum_probs=140.1
Q ss_pred CCcEEEEECCCCc-eEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCC
Q psy9598 539 DKTIRIWNLQTLA-PISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPG 617 (1915)
Q Consensus 539 DgtIrVWDl~tg~-~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~ 617 (1915)
...|+.+++.... ....+......+.+|.|.+.. +.++++-...+.|..+++.+......... ..
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~---~~lyw~D~~~~~I~r~~~~g~~~~~~~~~-----------~~ 77 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSH---GLIYWSDVSEEAIKRTEFNKTESVQNVVV-----------SG 77 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGG---TEEEEEETTTTEEEEEETTSSSCCCEEEE-----------EC
T ss_pred cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCC---CEEEEEECCCCcEEEEEccCCCceEEEEc-----------CC
Confidence 4679999998763 122222223456789998742 45666666778899898876532111111 01
Q ss_pred CCceEEEEECC-CCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeC--CCcEEEEEccC
Q psy9598 618 NAHILCSSFSP-GGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSR--DGTALIWYYKC 694 (1915)
Q Consensus 618 ~~~V~~l~fsp-dg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~--DG~I~IWDl~~ 694 (1915)
-.....+++.+ .+.++++-...+.|.++++++.. ... .+.........|++.|.+..|+.+.. .+.|...++..
T Consensus 78 l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~--~~~-l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG 154 (318)
T 3sov_A 78 LLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL--RKV-LFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDG 154 (318)
T ss_dssp CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS--CEE-EECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTS
T ss_pred CCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCc--EEE-EEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCC
Confidence 13456788887 45555666667899999985422 111 12234456789999987665555542 46777776654
Q ss_pred CceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCCCeEEEEEcc
Q psy9598 695 SQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHP 774 (1915)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp 774 (1915)
.....+. .......+.|+|++++..|+.+....+.|..+|+........+.+......+|++..
T Consensus 155 ~~~~~~~----------------~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~ 218 (318)
T 3sov_A 155 SSRFIII----------------NSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE 218 (318)
T ss_dssp CSCEEEE----------------CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEET
T ss_pred CCeEEEE----------------ECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeC
Confidence 3211110 011234578999999888888887688999999864433333333445567777753
Q ss_pred CCCCEEEEEecCceEEEEECCCCcc
Q psy9598 775 FDSRVLLSAGHDGLIIIWDILSSKQ 799 (1915)
Q Consensus 775 ~dg~~LaSgs~DG~I~IWdl~s~~~ 799 (1915)
+.++++-...+.|..++..++..
T Consensus 219 --~~lywtd~~~~~V~~~~~~~G~~ 241 (318)
T 3sov_A 219 --DILYWTDWSTHSILACNKYTGEG 241 (318)
T ss_dssp --TEEEEEETTTTEEEEEETTTCCS
T ss_pred --CEEEEEecCCCeEEEEECCCCCc
Confidence 56666766778899999877766
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=97.53 E-value=0.55 Score=61.57 Aligned_cols=346 Identities=13% Similarity=0.037 Sum_probs=193.8
Q ss_pred CCCCcEEEEEEcCCCCEEEEEEC--CCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEE-eCCCcEEEEECCCC
Q psy9598 474 GHLSAVFCVLFDKLGEVIVTGAD--DLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAG-TVDKTIRIWNLQTL 550 (1915)
Q Consensus 474 gH~~~V~~vafspdg~~LaTGs~--Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSg-s~DgtIrVWDl~tg 550 (1915)
.....-..|+++|.+.+|+.... .+.|...++........+ ..-...+.|++++++..|+.+ ...+.|...++...
T Consensus 120 ~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~-~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~ 198 (628)
T 4a0p_A 120 KDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLV-PNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGL 198 (628)
T ss_dssp SSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred CCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEE-CCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCC
Confidence 44466789999986556665542 467888887544333223 344568899999987666655 45678999998764
Q ss_pred ceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceecc--Cccc---ccc-------ccCC--
Q psy9598 551 APISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFH--EPVM---FNE-------RIRP-- 616 (1915)
Q Consensus 551 ~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~--~~~~---~~~-------~~~~-- 616 (1915)
.. ..+........+|++.. +.++++-...+.|...|..++.....+... .+.. +.. ....
T Consensus 199 ~~-~v~~~~l~~P~glav~~-----~~ly~tD~~~~~I~~~dk~tg~~~~~l~~~~~~p~~i~v~~~~~q~~~n~C~~~n 272 (628)
T 4a0p_A 199 NR-EVIADDLPHPFGLTQYQ-----DYIYWTDWSRRSIERANKTSGQNRTIIQGHLDYVMDILVFHSSRQSGWNECASSN 272 (628)
T ss_dssp SC-EEEEECCSCEEEEEEET-----TEEEEEETTTTEEEEEETTTCCSCEEEECSCCSCCEEEEECGGGSCCCCTTTTTG
T ss_pred ce-EEeeccCCCceEEEEEC-----CEEEEecCCCCEEEEEECCCCCceEEEecCCCCcceeeeeeecccccceEeccCC
Confidence 44 34444445566787754 245555556788888887666433222110 0000 000 0000
Q ss_pred CC----------CceEEEE-----ECCCC-------cEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCC
Q psy9598 617 GN----------AHILCSS-----FSPGG-------LFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHS 674 (1915)
Q Consensus 617 ~~----------~~V~~l~-----fspdg-------~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspd 674 (1915)
+. +...|.| ..+++ .+|+.+. ...|+-..+...........+ ..-..+.+|+|.+.
T Consensus 273 g~C~~~C~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~Ll~s~-~~~i~~i~l~~~~~~~~~l~~-~~~~~~~~ld~d~~ 350 (628)
T 4a0p_A 273 GHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTFLLFSQ-KSAINRMVIDEQQSPDIILPI-HSLRNVRAIDYDPL 350 (628)
T ss_dssp GGCSSEEEEETTTEEEEECSTTCEECTTSSCEECCSSEEEEEE-TTEEEEECCCTTCCCCEECCC-TTCSCEEEEEEETT
T ss_pred CCcchhhhcCCCCCeeEEcCCCcEecccCCcCccccceeeeec-cceEEEEecccccCceEEEEe-hhcCCceEEEEecC
Confidence 00 1112211 11222 1233332 234544444322111111111 12245778999886
Q ss_pred CCEEEEE-eCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCC
Q psy9598 675 HLRFVSG-SRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFN 753 (1915)
Q Consensus 675 g~~L~sg-s~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~t 753 (1915)
...|+.+ ...+.|..+++.......+.... .........+..++++..++.|+.+....+.|.+.++.
T Consensus 351 ~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~----------~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~- 419 (628)
T 4a0p_A 351 DKQLYWIDSRQNMIRKAQEDGSQGFTVVVSS----------VPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLD- 419 (628)
T ss_dssp TTEEEEEETTTTEEEEEETTSCSCEEEEC------------------CCCEEEEEEETTTTEEEEEETTTTEEEEEETT-
T ss_pred CCeEEEEecCcceEEEEEcCCCCceEEEEcc----------cccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECC-
Confidence 6655544 45677877766543211111000 00001233577899999988888777668899999985
Q ss_pred CceEEEee-CCCCCeEEEEEccCCCCEEEEEecCc--eEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEE
Q psy9598 754 GDLVQVLK-GHTNEVFVLESHPFDSRVLLSAGHDG--LIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCA 830 (1915)
Q Consensus 754 g~~i~~l~-gH~~~V~sl~~sp~dg~~LaSgs~DG--~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~La 830 (1915)
|.....+. .......+|+++|..+.+++|-.... .|...++..... ..+. .........+++.+++..|.
T Consensus 420 G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~---~~l~----~~~l~~P~gla~D~~~~~LY 492 (628)
T 4a0p_A 420 GRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTER---EVLF----FSGLSKPIALALDSRLGKLF 492 (628)
T ss_dssp SCEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSC---EEEE----CSSCSCEEEEEEETTTTEEE
T ss_pred CCeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCc---EEEE----eccCCCccEEEEeCCCCEEE
Confidence 55554443 44566899999996666666644333 566666654332 2221 12335678999999888888
Q ss_pred EEeC-CCeEEEEeCCCC
Q psy9598 831 LTDS-YGHLLVYGLGGF 846 (1915)
Q Consensus 831 sg~~-dG~I~Iwdl~s~ 846 (1915)
.++. .+.|..+++...
T Consensus 493 w~D~~~~~I~~~~~dG~ 509 (628)
T 4a0p_A 493 WADSDLRRIESSDLSGA 509 (628)
T ss_dssp EEETTTTEEEEEETTSC
T ss_pred EEeCCCCEEEEEeCCCC
Confidence 7765 478999998654
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=97.48 E-value=0.089 Score=65.19 Aligned_cols=247 Identities=12% Similarity=-0.016 Sum_probs=148.0
Q ss_pred CEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEE-EEeCCCcEEEEECCCC----ceEEEeecCCCCe
Q psy9598 489 EVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLA-AGTVDKTIRIWNLQTL----APISVLVGHQGII 563 (1915)
Q Consensus 489 ~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~La-Sgs~DgtIrVWDl~tg----~~~~~l~~h~~~V 563 (1915)
.+|+.+. ...|+..++........+. ....+..|+|++.+..|+ +-...+.|..+++... .....+.......
T Consensus 84 ~~ll~~~-~~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p 161 (400)
T 3p5b_L 84 AYLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP 161 (400)
T ss_dssp CEEEEEE-TTEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCE
T ss_pred ceeEEec-cceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCc
Confidence 3444444 3588888987765544444 456789999998655554 4445788999998752 2333444345567
Q ss_pred EEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEe-C-CCe
Q psy9598 564 TGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGS-G-DHH 641 (1915)
Q Consensus 564 ~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs-~-Dg~ 641 (1915)
..|++.+. ++.++++-...+.|.+.++....... .+. ........+++.|.+.+|+... . .+.
T Consensus 162 ~glavD~~---~~~lY~~d~~~~~I~~~~~~g~~~~~--l~~----------~~~~~P~~iavdp~~g~ly~td~~~~~~ 226 (400)
T 3p5b_L 162 DGLAVDWI---HSNIYWTDSVLGTVSVADTKGVKRKT--LFR----------ENGSKPRAIVVDPVHGFMYWTDWGTPAK 226 (400)
T ss_dssp EEEEEETT---TTEEEEEETTTTEEEEECTTTCSEEE--EEE----------CSSCCEEEEEEETTTTEEEEEECSSSCC
T ss_pred ccEEEEec---CCceEEEECCCCeEEEEeCCCCceEE--EEe----------CCCCCcceEEEecccCeEEEEeCCCCCE
Confidence 88888763 24566666678889998887543211 111 1124578899999655555544 2 367
Q ss_pred EEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEE-eCCCcEEEEEccCCceEEeeecccccCCCCccccccccc
Q psy9598 642 VRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSG-SRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNK 720 (1915)
Q Consensus 642 I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sg-s~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 720 (1915)
|...++++... . ..+...-.....|++++++..|+.+ +..+.|..+|+.......+... ...
T Consensus 227 I~~~~~dG~~~--~-~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~--------------~~~ 289 (400)
T 3p5b_L 227 IKKGGLNGVDI--Y-SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILED--------------EKR 289 (400)
T ss_dssp EEEEETTSCSC--E-EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEEC--------------SST
T ss_pred EEEEeCCCCcc--E-EEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeC--------------CCC
Confidence 88888754321 1 1122333567899999877766655 4567888888865442222110 001
Q ss_pred cccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCCCeEEEE
Q psy9598 721 KIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLE 771 (1915)
Q Consensus 721 ~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~ 771 (1915)
......|++ ++..|+.+....+.|..+|..+|+.+..+.........|.
T Consensus 290 l~~P~gl~v--~~~~lywtd~~~~~V~~~~~~~G~~~~~i~~~~~~p~~i~ 338 (400)
T 3p5b_L 290 LAHPFSLAV--FEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMV 338 (400)
T ss_dssp TSSEEEEEE--ETTEEEEEESSSCSEEEEESSSCCCCEEEECSCSCEEEEE
T ss_pred CCCCEEEEE--eCCEEEEecCCCCeEEEEEcCCCCceEEEecCCCCCceEE
Confidence 122345555 3445555555478899999888887777764444445554
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=97.46 E-value=0.08 Score=65.61 Aligned_cols=234 Identities=12% Similarity=-0.042 Sum_probs=143.3
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccc
Q psy9598 532 LLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFN 611 (1915)
Q Consensus 532 ~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~ 611 (1915)
+|+.+. ...|+..++........+ .....+..|+|.+. ++.++++-...+.|..+++..........
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~~~~~-~~~~~~~~l~~d~~---~~~lywsD~~~~~I~~~~~~g~~~~~~~~-------- 151 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEYTSLI-PNLRNVVALDTEVA---SNRIYWSDLSQRMICSTQLDRAHGVSSYD-------- 151 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSCEEEE-CSCSCEEEEEEETT---TTEEEEEETTTTEEEEEEC------CCCE--------
T ss_pred eeEEec-cceeEEEccCCcceeEec-cccCcceEEeeeec---cCceEEEecCCCeEEEEEcccCCCCCcce--------
Confidence 444443 467899998876555444 34567889999984 34555565667889888886532100000
Q ss_pred cccCCCCCceEEEEECC-CCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeC--CCcEE
Q psy9598 612 ERIRPGNAHILCSSFSP-GGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSR--DGTAL 688 (1915)
Q Consensus 612 ~~~~~~~~~V~~l~fsp-dg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~--DG~I~ 688 (1915)
............+++.+ .+.+.++-...+.|.+.++++.. ....+.........|++.|.+.+|+.+.. .+.|.
T Consensus 152 ~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~---~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~ 228 (400)
T 3p5b_L 152 TVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK---RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIK 228 (400)
T ss_dssp EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCS---EEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEE
T ss_pred EEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCc---eEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEE
Confidence 00111224577899987 55556666677889999885322 22222333455789999986665555442 36777
Q ss_pred EEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeC--CCCC
Q psy9598 689 IWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKG--HTNE 766 (1915)
Q Consensus 689 IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~g--H~~~ 766 (1915)
..++.......+. .......+.|++++++..|+.+....+.|..+|+........+.. .-..
T Consensus 229 ~~~~dG~~~~~~~----------------~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~ 292 (400)
T 3p5b_L 229 KGGLNGVDIYSLV----------------TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAH 292 (400)
T ss_dssp EEETTSCSCEEEE----------------CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSS
T ss_pred EEeCCCCccEEEE----------------ECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCC
Confidence 7776644322111 011245678999999999998887678999999865443333332 2344
Q ss_pred eEEEEEccCCCCEEEEEecCceEEEEECCCCcc
Q psy9598 767 VFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQ 799 (1915)
Q Consensus 767 V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~ 799 (1915)
..+|++. .+.++++-...+.|..++..++..
T Consensus 293 P~gl~v~--~~~lywtd~~~~~V~~~~~~~G~~ 323 (400)
T 3p5b_L 293 PFSLAVF--EDKVFWTDIINEAIFSANRLTGSD 323 (400)
T ss_dssp EEEEEEE--TTEEEEEESSSCSEEEEESSSCCC
T ss_pred CEEEEEe--CCEEEEecCCCCeEEEEEcCCCCc
Confidence 5677773 456677777778898888777766
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=97.39 E-value=0.69 Score=62.28 Aligned_cols=334 Identities=10% Similarity=0.046 Sum_probs=182.6
Q ss_pred CcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEE-eCC----CCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCc
Q psy9598 477 SAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATL-RGC----SGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLA 551 (1915)
Q Consensus 477 ~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l-~gH----~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~ 551 (1915)
..|.++..+.+|.+.+ |+.. -|..++..++...... ... ...|.+|....++..|..|+. +-|..++..++.
T Consensus 146 ~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~ 222 (758)
T 3ott_A 146 NTIYSIIRTKDNQIYV-GTYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQ 222 (758)
T ss_dssp SCEEEEEECTTCCEEE-EETT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTE
T ss_pred CeEEEEEEcCCCCEEE-EeCC-CHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCe
Confidence 5799999988887655 5555 4778888776543221 111 224889988887765555554 357888987765
Q ss_pred eEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCc
Q psy9598 552 PISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGL 631 (1915)
Q Consensus 552 ~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~ 631 (1915)
...........|.+|..... ..|..|+.+ -|.+++..+.... ..... . .....-....|.++....+|.
T Consensus 223 ~~~~~~l~~~~i~~i~~d~~-----g~lWigT~~-Gl~~~~~~~~~~~-~~~~~-~---~~~~~l~~~~i~~i~~D~~g~ 291 (758)
T 3ott_A 223 IKQTEAFHNNSIKSLALDGN-----GDLLAGTDN-GLYVYHNDTTPLQ-HIIHD-S---RNIQSLTNNIIWNIFADQEHN 291 (758)
T ss_dssp EEEEEEEEEEEEEEEEECTT-----CCEEEEETT-EEEEECCTTSCCE-EECCC-T---TCTTSCSCSCEEEEEECTTCC
T ss_pred EEeccCCCCCeEEEEEEcCC-----CCEEEEeCC-ceeEEecCCCcEE-EEEcC-C---CCcCcCCcCeEEEEEEcCCCC
Confidence 43221112345777766542 345555554 4777877654321 11100 0 000011235689999888876
Q ss_pred EEEEEeCCCeEEEEEecCCCCCceeEEec-----cCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEe-eeccc
Q psy9598 632 FLATGSGDHHVRVYKMDGVDSPLGILEVE-----EHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFI-RLDMN 705 (1915)
Q Consensus 632 ~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~-----~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~-~~~~~ 705 (1915)
|-+|+..| |.++... . ........ .....|.+|....+|.+. .|+.+| +..++..++..... .....
T Consensus 292 -lWiGT~~G-l~~~~~~--~-~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lW-iGt~~G-l~~~~~~~~~~~~~~~~~~~ 364 (758)
T 3ott_A 292 -IWLGTDYG-ISLSRYN--S-ALQFIPISQITGTGDGNQFYSLFRDSKGFYW-FGGANG-LIRFTDPAGERHDAIWYRMG 364 (758)
T ss_dssp -EEEEESSS-EEEECCC--C--CEEEEHHHHSCSCCCCBEEEEEECTTCCEE-EEETTE-EEEESCTTSSCCCCEEECTT
T ss_pred -EEEEeCCc-ccccccC--C-ceeEEecccCCCCCCCceEEEEEEcCCCCEE-EeeCCc-ceeecccccccceeEEeccC
Confidence 45555566 4444321 1 11111111 123468888887777644 455555 55565544321000 00000
Q ss_pred ccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEee-C-----CCCCeEEEEEccCCCCE
Q psy9598 706 TCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLK-G-----HTNEVFVLESHPFDSRV 779 (1915)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~-g-----H~~~V~sl~~sp~dg~~ 779 (1915)
. .........|.++.-+.+|...+.+ ++-|.+||..+++...... . ....|.++.... ++.
T Consensus 365 -----~---~~~~l~~~~v~~i~~d~~g~lWigt---~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~g~- 431 (758)
T 3ott_A 365 -----D---KTYPLSHNRIRHIYEDKEQQLWIAT---DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDT-AGQ- 431 (758)
T ss_dssp -----C---SSSCCSCSCEEEEEECTTSCEEEEE---TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECT-TSE-
T ss_pred -----C---cCCCCCCCceEEEEECCCCCEEEEe---CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcC-CCC-
Confidence 0 0001123568899988888766543 3568999988876543221 1 234588887765 444
Q ss_pred EEEEecCceEEEEECCCC-----ccccc---eeeeeeecCCCCcceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc
Q psy9598 780 LLSAGHDGLIIIWDILSS-----KQRGY---KWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGGFK 847 (1915)
Q Consensus 780 LaSgs~DG~I~IWdl~s~-----~~~~~---~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl~s~~ 847 (1915)
|..|+..+-|.+++..+. .. . ..+. ...+.....|.++....+|.+.+.++..+-|..|+..++.
T Consensus 432 lWigT~~~Gl~~~~~~~~~~~~~~~--~~~~~~~~-~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~ 504 (758)
T 3ott_A 432 LWISTCLGGIFVVDKHKLMQSTSGQ--YIAEQNYS-VHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKINPRTRE 504 (758)
T ss_dssp EEEEESSSCEEEEEHHHHHHCCSSE--EECSEEEC-GGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEEETTTTE
T ss_pred EEEEECCCceEEEccccccccCCcc--eecccccc-cccccccceeeeEEEcCCCCEEEEccCCCCcEEEeCCCCc
Confidence 555776667888886431 11 1 0111 1112223458899999999977644444558888887654
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.30 E-value=0.05 Score=73.12 Aligned_cols=246 Identities=12% Similarity=0.012 Sum_probs=145.3
Q ss_pred EEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCC-EEEEEeCCCcEEEEECCCC----ceEE
Q psy9598 480 FCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNI-LLAAGTVDKTIRIWNLQTL----APIS 554 (1915)
Q Consensus 480 ~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~-~LaSgs~DgtIrVWDl~tg----~~~~ 554 (1915)
+|.++.... +|+.+ ....|+..++........+. ....+..|+|++.+. ++++-...+.|+.+++... ....
T Consensus 388 ~C~~~~~~p-~Ll~a-n~~~Ir~i~l~~~~~~~l~~-~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~ 464 (791)
T 3m0c_C 388 ACKAVGSIA-YLFFT-NRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDT 464 (791)
T ss_dssp CCEETTSCC-EEEEE-CBSSEEEECTTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEE
T ss_pred eeeeccccc-ccccc-cccceeEeeccCCcceeeec-CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeE
Confidence 455544433 44433 33568888887665544444 345688999998554 4455556688999998753 2334
Q ss_pred EeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEE
Q psy9598 555 VLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLA 634 (1915)
Q Consensus 555 ~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~La 634 (1915)
.+.........|++.+. +++++++-...+.|.+.++..... ..+ +. ........|++.|.+.+|+
T Consensus 465 vi~~~l~~P~GLAvD~~---~~~LY~tD~~~~~I~v~~ldG~~~-~~l-~~----------~~l~~P~gIaVDp~~g~LY 529 (791)
T 3m0c_C 465 VISRDIQAPDGLAVDWI---HSNIYWTDSVLGTVSVADTKGVKR-KTL-FR----------ENGSKPRAIVVDPVHGFMY 529 (791)
T ss_dssp EECSSCSCCCEEEEETT---TTEEEEEETTTTEEEEEETTSSSE-EEE-EE----------CTTCCEEEEEEETTTTEEE
T ss_pred EEecCCCCcceeeeeec---CCcEEEEecCCCeEEEEeCCCCeE-EEE-Ee----------CCCCCcceEEEecCCCCEE
Confidence 44434556778888764 245666777788999999875431 111 11 1124578999999755555
Q ss_pred EEe-CC-CeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEe-CCCcEEEEEccCCceEEeeecccccCCCC
Q psy9598 635 TGS-GD-HHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGS-RDGTALIWYYKCSQWRFIRLDMNTCLPHT 711 (1915)
Q Consensus 635 sgs-~D-g~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs-~DG~I~IWDl~~~~~~~~~~~~~~~~~~~ 711 (1915)
... .. +.|.+.++++.. ....+...-.....|++++.+..|+.+. ..+.|...++.......+...
T Consensus 530 wtD~g~~~~I~~~~~dG~~---~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~-------- 598 (791)
T 3m0c_C 530 WTDWGTPAKIKKGGLNGVD---IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILED-------- 598 (791)
T ss_dssp EEECSSSCEEEEEETTSCC---EEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEEC--------
T ss_pred EecCCCCCeEEEEecCCCc---eEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecC--------
Confidence 544 33 678888875322 1122233345788999997766666554 556788888765443222110
Q ss_pred ccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeC
Q psy9598 712 KETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKG 762 (1915)
Q Consensus 712 ~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~g 762 (1915)
.........|++ .+.+|+.+....+.|...|..+|..+..+..
T Consensus 599 ------~~~l~~P~glav--~~~~lYwtD~~~~~I~~~dk~tG~~~~~l~~ 641 (791)
T 3m0c_C 599 ------EKRLAHPFSLAV--FEDKVFWTDIINEAIFSANRLTGSDVNLLAE 641 (791)
T ss_dssp ------TTTTSSEEEEEE--ETTEEEEEETTTTEEEEEETTTCCCCEEEEC
T ss_pred ------CCccCCCCEEEE--eCCEEEEEECCCCEEEEEeCCCCcceEEeec
Confidence 001112334555 3457777766578888888878876666643
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.084 Score=66.57 Aligned_cols=263 Identities=11% Similarity=0.000 Sum_probs=139.0
Q ss_pred CEEEEEEeCC--CCEEEEEeCCCcEEEEECCCCceEEEeecC---CCCeEEEEe-------ccCccCCCcEEEEEeCCC-
Q psy9598 520 EISDIAIDNR--NILLAAGTVDKTIRIWNLQTLAPISVLVGH---QGIITGVNF-------CPLEVNGFNYLASTSTDG- 586 (1915)
Q Consensus 520 ~I~~Lafspd--g~~LaSgs~DgtIrVWDl~tg~~~~~l~~h---~~~V~sl~f-------sp~~~~d~~~L~sgs~Dg- 586 (1915)
....|+|+|. ++++++....+.|++.|+.++.....+... ......|+| .+. +.+|+++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~----G~~lyvad~~~~ 215 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADE----AEYMIVAIDYDG 215 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCT----TCEEEEEECCCT
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCC----CCEEEEEeCCCC
Confidence 3578999983 444455444567999999887765554332 235789999 874 36555555443
Q ss_pred ------eEEEEecccCccccc-eeccCccccccccCCCCCceEEEEECC-CCcEEEEEeCCCeEEEEEec-------CCC
Q psy9598 587 ------CIGFWKYKLDIDISK-TVFHEPVMFNERIRPGNAHILCSSFSP-GGLFLATGSGDHHVRVYKMD-------GVD 651 (1915)
Q Consensus 587 ------tI~iWDl~~~~~~~~-~~~~~~~~~~~~~~~~~~~V~~l~fsp-dg~~Lasgs~Dg~I~IwDl~-------~~~ 651 (1915)
.|.+++......... .... ... . .....+++++| ++.++++-..++.|..+|+. +..
T Consensus 216 ~~~~~~~V~~i~r~~~G~~~~~~~~~---~v~-~----~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~ 287 (496)
T 3kya_A 216 KGDESPSVYIIKRNADGTFDDRSDIQ---LIA-A----YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGG 287 (496)
T ss_dssp TGGGEEEEEEEECCTTSCCSTTSCEE---EEE-E----ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTC
T ss_pred CcccCceEEEEecCCCCceeecccce---eec-c----CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCce
Confidence 255555333111110 0000 000 1 12345778899 45556666778889999985 222
Q ss_pred C-----------CceeEEeccCCCCeeEEEEcCCCCEE-EEEeCCCcEEEEEccCCc-eE---EeeecccccCCCCcccc
Q psy9598 652 S-----------PLGILEVEEHSDKVDSIQWSHSHLRF-VSGSRDGTALIWYYKCSQ-WR---FIRLDMNTCLPHTKETS 715 (1915)
Q Consensus 652 ~-----------~~~i~~l~~h~~~V~sl~fspdg~~L-~sgs~DG~I~IWDl~~~~-~~---~~~~~~~~~~~~~~~~~ 715 (1915)
. ...+..+ +.......|+|+|+|.+| ++-+..+.|+.+++.... .+ ........ ..+...-.
T Consensus 288 ~~tp~~~~~~g~~~~l~~~-~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g-~~G~~DG~ 365 (496)
T 3kya_A 288 SWDPIVKNNPNTFKQLFTI-ADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYK-QSGYRDDV 365 (496)
T ss_dssp CCCCBGGGCTTTEEEEEEC-SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTT-BCCCBCCB
T ss_pred eecccccccccccceeEec-CCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCC-CCcccCCc
Confidence 2 0022222 223456799999999954 444567788887664322 11 11111000 00000000
Q ss_pred ccccccccEE-EEEEC-------CCCCEEEEEEecCCeEEEEECCCCceEEEeeCCC-----------------------
Q psy9598 716 DETNKKIKVT-MVAWD-------ASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHT----------------------- 764 (1915)
Q Consensus 716 ~~~~~~~~V~-~va~s-------pdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~----------------------- 764 (1915)
.....-.... .++.. .+| .|+++....+.|+.++ .+|. +.++.|..
T Consensus 366 ~~~a~f~~P~~gv~vd~~~~~~~~~g-~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~ 442 (496)
T 3kya_A 366 GTEARMNNPCQGVFVKNPDYTGEEEY-DFYFVDRLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVAR 442 (496)
T ss_dssp GGGCBCSSEEEEEEEECTTCCSSCCE-EEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCC
T ss_pred ccccccCCCeEEEEEccccccccCCC-eEEEEECCCCEEEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhh
Confidence 0001112233 45554 334 4555655588999998 4564 44554321
Q ss_pred -CCeEEEEEccCCCCEEEEEecCceEEEEECCCCcc
Q psy9598 765 -NEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQ 799 (1915)
Q Consensus 765 -~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~ 799 (1915)
.....|++.+.++.++++=.....|+.+++....+
T Consensus 443 f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~ 478 (496)
T 3kya_A 443 FRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEEN 478 (496)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC-
T ss_pred cCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCcc
Confidence 12467777772255555555667777777765443
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=97.23 E-value=0.083 Score=63.27 Aligned_cols=229 Identities=10% Similarity=0.013 Sum_probs=136.0
Q ss_pred CCcEEEEECCCCc--EEEEEeCCCCCEEEEEEeCCCC-EEEEEeCCCcEEEEECCCCce-EEEeecCCCCeEEEEeccCc
Q psy9598 497 DLLIKLWRARDGK--LLATLRGCSGEISDIAIDNRNI-LLAAGTVDKTIRIWNLQTLAP-ISVLVGHQGIITGVNFCPLE 572 (1915)
Q Consensus 497 Dg~I~IWd~~tg~--~~~~l~gH~~~I~~Lafspdg~-~LaSgs~DgtIrVWDl~tg~~-~~~l~~h~~~V~sl~fsp~~ 572 (1915)
...|+.+++.... ....+. ....+..|+|++.+. ++++-...+.|..+++..+.. ...+........++++.+.
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~-~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~- 89 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVG-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWL- 89 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEE-EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETT-
T ss_pred cCeEEEEECCCCceEEEEEec-CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcC-
Confidence 3578889987653 112222 123567899998544 555555678899999886642 2223333345677888763
Q ss_pred cCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEe--CCCeEEEEEecCC
Q psy9598 573 VNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGS--GDHHVRVYKMDGV 650 (1915)
Q Consensus 573 ~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs--~Dg~I~IwDl~~~ 650 (1915)
++.++++-...+.|.++++..... ..... ........+++.|.+.+|+.+. ..+.|..+++++.
T Consensus 90 --~g~ly~~d~~~~~I~~~~~dG~~~--~~l~~----------~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~ 155 (318)
T 3sov_A 90 --GEKLYWTDSETNRIEVSNLDGSLR--KVLFW----------QELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGS 155 (318)
T ss_dssp --TTEEEEEETTTTEEEEEETTSCSC--EEEEC----------SSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSC
T ss_pred --CCeEEEEECCCCEEEEEECCCCcE--EEEEe----------CCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCC
Confidence 345666666778999998865421 11110 1224568899998655555554 2577888887542
Q ss_pred CCCceeEEeccCCCCeeEEEEcCCCCEEEEE-eCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEE
Q psy9598 651 DSPLGILEVEEHSDKVDSIQWSHSHLRFVSG-SRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAW 729 (1915)
Q Consensus 651 ~~~~~i~~l~~h~~~V~sl~fspdg~~L~sg-s~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~ 729 (1915)
. ... .....-.....|+|++++..|+.+ +..+.|..+|+.......+.. ........+++
T Consensus 156 ~--~~~-~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~----------------~~~~~P~glav 216 (318)
T 3sov_A 156 S--RFI-IINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVK----------------GSLPHPFALTL 216 (318)
T ss_dssp S--CEE-EECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC----------------SCCSCEEEEEE
T ss_pred C--eEE-EEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEec----------------CCCCCceEEEE
Confidence 2 111 122223456899999876655554 456788888886543221110 01223445666
Q ss_pred CCCCCEEEEEEecCCeEEEEECCCCceEEEeeC
Q psy9598 730 DASDRWVITAINFNFQIKIWDAFNGDLVQVLKG 762 (1915)
Q Consensus 730 spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~g 762 (1915)
. +..|+.+....+.|..++..+|+.+..+..
T Consensus 217 ~--~~~lywtd~~~~~V~~~~~~~G~~~~~i~~ 247 (318)
T 3sov_A 217 F--EDILYWTDWSTHSILACNKYTGEGLREIHS 247 (318)
T ss_dssp E--TTEEEEEETTTTEEEEEETTTCCSCEEEEC
T ss_pred e--CCEEEEEecCCCeEEEEECCCCCceEEEeC
Confidence 4 335555555578899999888877666543
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.1 Score=70.22 Aligned_cols=211 Identities=9% Similarity=-0.053 Sum_probs=127.1
Q ss_pred CceEEEEECCC-CcEEEEEeCCCeEEEEEecCCCC-CceeEEeccCCCCeeEEEEcCCCC-EEEEEeCCCcEEEEEccCC
Q psy9598 619 AHILCSSFSPG-GLFLATGSGDHHVRVYKMDGVDS-PLGILEVEEHSDKVDSIQWSHSHL-RFVSGSRDGTALIWYYKCS 695 (1915)
Q Consensus 619 ~~V~~l~fspd-g~~Lasgs~Dg~I~IwDl~~~~~-~~~i~~l~~h~~~V~sl~fspdg~-~L~sgs~DG~I~IWDl~~~ 695 (1915)
..+..++|++. +.++++-...+.|+.+++.+... ......+.........|++.+.+. ++++-...+.|.+.++...
T Consensus 424 ~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~ 503 (791)
T 3m0c_C 424 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 503 (791)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS
T ss_pred CceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCC
Confidence 56788999985 44555556678899998854221 111222333445677899987765 4555566788999988755
Q ss_pred ceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecC-CeEEEEECCCCceEEEeeCCCCCeEEEEEcc
Q psy9598 696 QWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFN-FQIKIWDAFNGDLVQVLKGHTNEVFVLESHP 774 (1915)
Q Consensus 696 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~D-g~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp 774 (1915)
....+.. ........|+++|.+.+|+.+.... +.|.+.++........+...-...+.|++.+
T Consensus 504 ~~~~l~~----------------~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~ 567 (791)
T 3m0c_C 504 KRKTLFR----------------ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDL 567 (791)
T ss_dssp SEEEEEE----------------CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEET
T ss_pred eEEEEEe----------------CCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEec
Confidence 4322211 1123467899999888888776433 7899999864444334443445789999998
Q ss_pred CCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCcccccC
Q psy9598 775 FDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTD-SYGHLLVYGLGGFKRPQNI 852 (1915)
Q Consensus 775 ~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~-~dG~I~Iwdl~s~~~~~~l 852 (1915)
..+.++++=...+.|...++..... ..+. ..........+|++. +..|..++ ..+.|...+..++..+..+
T Consensus 568 ~~~~LYwaD~~~~~I~~~d~dG~~~---~~v~--~~~~~l~~P~glav~--~~~lYwtD~~~~~I~~~dk~tG~~~~~l 639 (791)
T 3m0c_C 568 LSGRLYWVDSKLHSISSIDVNGGNR---KTIL--EDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNLL 639 (791)
T ss_dssp TTTEEEEEETTTTEEEEEETTSCSC---EEEE--ECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred CCCeEEEEeCCCCcEEEEecCCCce---EEEe--cCCCccCCCCEEEEe--CCEEEEEECCCCEEEEEeCCCCcceEEe
Confidence 4555555555677899999865443 2221 011112334566663 34555554 5577888887776554443
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=97.15 E-value=1.1 Score=60.23 Aligned_cols=329 Identities=12% Similarity=0.089 Sum_probs=177.0
Q ss_pred CCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEE
Q psy9598 476 LSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISV 555 (1915)
Q Consensus 476 ~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~ 555 (1915)
...|.|+..+.+| .|..|+.+| +.+||..+.............|.++.. .+| .|..|+.+ -|..+|..++.....
T Consensus 62 ~~~i~~i~~d~~g-~lWigT~~G-l~~yd~~~~~f~~~~~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~~~~ 136 (758)
T 3ott_A 62 NTRIYCGVIIDNT-YLYMGTDNG-ILVYNYRADRYEQPETDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKLTSF 136 (758)
T ss_dssp SSCEEEEEEETTT-EEEEEETTE-EEEEETTTTEECCCSCCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCEEEE
T ss_pred CceEEEEEEcCCC-cEEEEeCCC-eEEEeCCCCEEECcccCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeEEEe
Confidence 3579999888776 566777765 789998876543211112345777765 355 45556655 578889877654332
Q ss_pred ee----cCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCc
Q psy9598 556 LV----GHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGL 631 (1915)
Q Consensus 556 l~----~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~ 631 (1915)
.. .....|.++..... ..|..|+..| |..++..++... .+..+. ........|.++....++.
T Consensus 137 ~~~~~~l~~~~i~~i~~d~~-----g~lWigt~~G-l~~~~~~~~~~~---~~~~~~----~~~~~~~~i~~i~~d~~~~ 203 (758)
T 3ott_A 137 DTRRNGLPNNTIYSIIRTKD-----NQIYVGTYNG-LCRYIPSNGKFE---GIPLPV----HSSQSNLFVNSLLEDTTRQ 203 (758)
T ss_dssp CHHHHCCSCSCEEEEEECTT-----CCEEEEETTE-EEEEETTTTEEE---EECCCC----CTTCSSCCEEEEEEETTTT
T ss_pred ccCCCCcCCCeEEEEEEcCC-----CCEEEEeCCC-HhhCccCCCceE---EecCCC----ccccccceeEEEEEECCCC
Confidence 11 11345777776542 2344455554 667776554311 011000 0001124588888887776
Q ss_pred EEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCC
Q psy9598 632 FLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHT 711 (1915)
Q Consensus 632 ~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~ 711 (1915)
.|.+|+. +-|..|+... ........+ ....|.+|....+|.+.+ |+.+ -+.+++..+...........
T Consensus 204 ~lWigt~-~Gl~~~~~~~-~~~~~~~~l--~~~~i~~i~~d~~g~lWi-gT~~-Gl~~~~~~~~~~~~~~~~~~------ 271 (758)
T 3ott_A 204 CVWIGTE-GYLFQYFPST-GQIKQTEAF--HNNSIKSLALDGNGDLLA-GTDN-GLYVYHNDTTPLQHIIHDSR------ 271 (758)
T ss_dssp EEEEEEE-EEEEEEETTT-TEEEEEEEE--EEEEEEEEEECTTCCEEE-EETT-EEEEECCTTSCCEEECCCTT------
T ss_pred EEEEEEC-CCCeEEcCCC-CeEEeccCC--CCCeEEEEEEcCCCCEEE-EeCC-ceeEEecCCCcEEEEEcCCC------
Confidence 5555654 4577777632 111111112 234588888887776544 4544 57788877665433211100
Q ss_pred ccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEee-------CCCCCeEEEEEccCCCCEEEEEe
Q psy9598 712 KETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLK-------GHTNEVFVLESHPFDSRVLLSAG 784 (1915)
Q Consensus 712 ~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~-------gH~~~V~sl~~sp~dg~~LaSgs 784 (1915)
....-....|.++..+.+|...+.+ . .| |.++.. ... ...+. .....|.++.... ++.+.+ |+
T Consensus 272 ---~~~~l~~~~i~~i~~D~~g~lWiGT-~-~G-l~~~~~-~~~-~~~~~~~~~~~~~~~~~v~~i~~D~-~g~lWi-Gt 341 (758)
T 3ott_A 272 ---NIQSLTNNIIWNIFADQEHNIWLGT-D-YG-ISLSRY-NSA-LQFIPISQITGTGDGNQFYSLFRDS-KGFYWF-GG 341 (758)
T ss_dssp ---CTTSCSCSCEEEEEECTTCCEEEEE-S-SS-EEEECC-CC--CEEEEHHHHSCSCCCCBEEEEEECT-TCCEEE-EE
T ss_pred ---CcCcCCcCeEEEEEEcCCCCEEEEe-C-Cc-cccccc-CCc-eeEEecccCCCCCCCceEEEEEEcC-CCCEEE-ee
Confidence 0011134568999998888766544 4 46 444433 221 11111 1234688887766 666544 45
Q ss_pred cCceEEEEECCCCccccceeeeee--ecCCCCcceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc
Q psy9598 785 HDGLIIIWDILSSKQRGYKWFHNI--VEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGGFK 847 (1915)
Q Consensus 785 ~DG~I~IWdl~s~~~~~~~~~~~~--~~~~~~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl~s~~ 847 (1915)
.+| +..++..++.......+... ........|.++.-..+|.+.+.+ ++-|..|+..++.
T Consensus 342 ~~G-l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt--~~GL~~~~~~~~~ 403 (758)
T 3ott_A 342 ANG-LIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLWIAT--DGSINRYDYATRQ 403 (758)
T ss_dssp TTE-EEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCEEEEE--TTEEEEEETTTTE
T ss_pred CCc-ceeecccccccceeEEeccCCcCCCCCCCceEEEEECCCCCEEEEe--CCcHhhcCcCCCc
Confidence 555 66666554332112222100 001123468888888888765544 3578889887654
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=97.12 E-value=0.05 Score=65.08 Aligned_cols=196 Identities=13% Similarity=0.165 Sum_probs=119.1
Q ss_pred CCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCC----CC---EEEEEe-C--CCcEEEEEC--CCCceE
Q psy9598 486 KLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNR----NI---LLAAGT-V--DKTIRIWNL--QTLAPI 553 (1915)
Q Consensus 486 pdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspd----g~---~LaSgs-~--DgtIrVWDl--~tg~~~ 553 (1915)
|...++++....+-+.|||+ +|+.++.+.+ +.++.+.+-|+ |. ++++.. . +++|+||++ .++. +
T Consensus 38 p~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l 113 (355)
T 3amr_A 38 PQNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-L 113 (355)
T ss_dssp GGGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-E
T ss_pred CCccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-e
Confidence 34566666667788999999 9999999864 56777766653 22 223333 3 578999977 3433 4
Q ss_pred EEeec------CC-CCeEEEEe--ccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEE
Q psy9598 554 SVLVG------HQ-GIITGVNF--CPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCS 624 (1915)
Q Consensus 554 ~~l~~------h~-~~V~sl~f--sp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l 624 (1915)
..+.. .. ..+..+|+ +|.. +..++++...+|.+..|++.....- .... .....+.- .+.+-.|
T Consensus 114 ~~i~~~~~pv~t~~~~pyGlcly~~~~~--g~~yafV~~k~G~~~q~~l~~~~~g-~~~~----~lVR~f~l-gsq~Egc 185 (355)
T 3amr_A 114 QSMTDPDHPIATAINEVYGFTLYHSQKT--GKYYAMVTGKEGEFEQYELKADKNG-YISG----KKVRAFKM-NSQTEGM 185 (355)
T ss_dssp EECSCTTSCEECCCSSCCCEEEEECTTT--CCEEEEEECSSSEEEEEEEEECTTS-CEEE----EEEEEEEC-SSCEEEE
T ss_pred eeccccccCcCCCCCCeeEEEEEecCCC--CcEEEEEECCCCeEEEEEEEeCCCC-cccc----eEEEEecC-CCCcceE
Confidence 44421 11 45667777 5532 3347888888999999998432110 0000 00011111 2567888
Q ss_pred EECCCCcEEEEEeCCCeEEEEEecCCC--CCceeEEec-cC-CCCeeEEEE--cCCCC-EEEEEe-CCCcEEEEEcc
Q psy9598 625 SFSPGGLFLATGSGDHHVRVYKMDGVD--SPLGILEVE-EH-SDKVDSIQW--SHSHL-RFVSGS-RDGTALIWYYK 693 (1915)
Q Consensus 625 ~fspdg~~Lasgs~Dg~I~IwDl~~~~--~~~~i~~l~-~h-~~~V~sl~f--spdg~-~L~sgs-~DG~I~IWDl~ 693 (1915)
.+.+....|+++-.+.-|..|+..... ....+..+. ++ ...+..|++ .+++. +|++++ .+.++.+||..
T Consensus 186 vvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 186 AADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp EEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred EEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 899888899999998665555542221 223333331 22 246888887 45555 566555 66799999986
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.02 E-value=0.26 Score=59.85 Aligned_cols=246 Identities=15% Similarity=0.077 Sum_probs=121.5
Q ss_pred CCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcE--EEEEe---CCCCCEEEEEEeCC---CCEEEEE-eCC-----Cc
Q psy9598 476 LSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKL--LATLR---GCSGEISDIAIDNR---NILLAAG-TVD-----KT 541 (1915)
Q Consensus 476 ~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~--~~~l~---gH~~~I~~Lafspd---g~~LaSg-s~D-----gt 541 (1915)
...-++|+|.|+|+++++ ..+|.|.+++ ++.. +..+. ........|+|+|+ +..|+.+ +.. +.
T Consensus 30 l~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~ 106 (352)
T 2ism_A 30 LEVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQ 106 (352)
T ss_dssp CSCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEE
T ss_pred CCCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccE
Confidence 455779999999985554 5679999998 4542 22221 12456899999998 4455444 322 56
Q ss_pred EEEEECCCCce-----EE-Eee---cCCCCeEEEEeccCccCCCcEEEEEeCC-------------CeEEEEecccCccc
Q psy9598 542 IRIWNLQTLAP-----IS-VLV---GHQGIITGVNFCPLEVNGFNYLASTSTD-------------GCIGFWKYKLDIDI 599 (1915)
Q Consensus 542 IrVWDl~tg~~-----~~-~l~---~h~~~V~sl~fsp~~~~d~~~L~sgs~D-------------gtI~iWDl~~~~~~ 599 (1915)
|..|++..+.. +. .+. +.......|+|.|+ +.++++.+.. |.|.-++.... ..
T Consensus 107 v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pd----G~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~-~p 181 (352)
T 2ism_A 107 VVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPD----GMLYVTTGEVYERELAQDLASLGGKILRLTPEGE-PA 181 (352)
T ss_dssp EEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTT----SCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSS-BC
T ss_pred EEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCC----CCEEEEECCCCCCccccCCCCCceEEEEEcCCCC-CC
Confidence 88888764321 11 132 11123368899984 3555554321 44554544321 00
Q ss_pred cceecc-CccccccccCCCCCceEEEEECC-CCcEEEEEeCCCeE------EEEEecCCC---------------CCcee
Q psy9598 600 SKTVFH-EPVMFNERIRPGNAHILCSSFSP-GGLFLATGSGDHHV------RVYKMDGVD---------------SPLGI 656 (1915)
Q Consensus 600 ~~~~~~-~~~~~~~~~~~~~~~V~~l~fsp-dg~~Lasgs~Dg~I------~IwDl~~~~---------------~~~~i 656 (1915)
....+. ........+..+......++|+| +|.++++-...+.+ .|.-+.... ....+
T Consensus 182 ~~npf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~ 261 (352)
T 2ism_A 182 PGNPFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPL 261 (352)
T ss_dssp TTCTTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCS
T ss_pred CCCcccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCe
Confidence 000000 00000011111123456789999 66655554333331 122222111 01122
Q ss_pred EEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEE
Q psy9598 657 LEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWV 736 (1915)
Q Consensus 657 ~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L 736 (1915)
..+ .+......++| .+|.++++....+.|...++............ .........+..+++.|+|.++
T Consensus 262 ~~~-~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~----------~~~~~~~~rp~~v~~~pdG~ly 329 (352)
T 2ism_A 262 YFW-PQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRV----------ETALSGFGRLREVQVGPDGALY 329 (352)
T ss_dssp EEC-TTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEE----------EEEEESSCCEEEEEECTTSCEE
T ss_pred Eec-CCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecch----------heecccCCCeeEEEECCCCcEE
Confidence 223 22334567777 46666666666666776666533210000000 0000122467889999999776
Q ss_pred EEEEe
Q psy9598 737 ITAIN 741 (1915)
Q Consensus 737 ~t~s~ 741 (1915)
++...
T Consensus 330 v~~~~ 334 (352)
T 2ism_A 330 VTTSN 334 (352)
T ss_dssp EEECS
T ss_pred EEEeC
Confidence 66543
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=96.83 E-value=0.065 Score=63.53 Aligned_cols=159 Identities=13% Similarity=0.106 Sum_probs=106.3
Q ss_pred EEEEEEcCCCCEEEEEE-CCCcEEEEECCCCcEEEE-EeC----CCC--CEEEEEE---eCCCCEEEEEe----------
Q psy9598 479 VFCVLFDKLGEVIVTGA-DDLLIKLWRARDGKLLAT-LRG----CSG--EISDIAI---DNRNILLAAGT---------- 537 (1915)
Q Consensus 479 V~~vafspdg~~LaTGs-~Dg~I~IWd~~tg~~~~~-l~g----H~~--~I~~Laf---spdg~~LaSgs---------- 537 (1915)
--|+.|++....|..++ ..|+|..|+...+..... +.+ ... .+..|.| .++++++++..
T Consensus 15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~ 94 (334)
T 2p9w_A 15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQ 94 (334)
T ss_dssp CSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSC
T ss_pred CcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccccc
Confidence 34789988666666666 789999999976654433 322 111 3689999 68887777543
Q ss_pred ---CCCcEEEEECC---CCceEEEee--cC-----------CCCeEEEEeccCccCCCcEEEEEeCC-CeEEEEecccCc
Q psy9598 538 ---VDKTIRIWNLQ---TLAPISVLV--GH-----------QGIITGVNFCPLEVNGFNYLASTSTD-GCIGFWKYKLDI 597 (1915)
Q Consensus 538 ---~DgtIrVWDl~---tg~~~~~l~--~h-----------~~~V~sl~fsp~~~~d~~~L~sgs~D-gtI~iWDl~~~~ 597 (1915)
.+..|..+|+. +++.+..+. .. ...+..++..+ +++..++++.. +.|..++.....
T Consensus 95 ~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~----~GnaYVt~s~~~~~I~rV~pdG~~ 170 (334)
T 2p9w_A 95 SSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDR----DGNSYVAFALGMPAIARVSADGKT 170 (334)
T ss_dssp CSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECT----TSCEEEEEEESSCEEEEECTTSCC
T ss_pred ccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECC----CCCEEEeCCCCCCeEEEEeCCCCE
Confidence 25779999999 888766553 11 12477888887 45888888887 777666655431
Q ss_pred cccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEec
Q psy9598 598 DISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMD 648 (1915)
Q Consensus 598 ~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~ 648 (1915)
+.......+ ........+.|+++|+|..|++....|.|..+|+.
T Consensus 171 -~~~~~~~~~------~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~ 214 (334)
T 2p9w_A 171 -VSTFAWESG------NGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVS 214 (334)
T ss_dssp -EEEEEECCC------CSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECS
T ss_pred -EeeeeecCC------CcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCC
Confidence 111111111 01112346789999999988888779999999985
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=96.79 E-value=1.7 Score=53.09 Aligned_cols=273 Identities=12% Similarity=0.109 Sum_probs=161.5
Q ss_pred CCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCC
Q psy9598 497 DLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGF 576 (1915)
Q Consensus 497 Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~ 576 (1915)
+..|.|.|+..+..+..-.-. --+.-.+|..+.||.-. ..++.|+|+.+...+..+.-.. .|.-=.|...
T Consensus 47 ~~~vvIiDl~~~~~~~rrpi~---AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e-~VvfWkWis~----- 116 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNPIRRPIS---ADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISL----- 116 (494)
T ss_dssp CCEEEEEETTSTTSCEEEECC---CSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSS-CCCEEEEEET-----
T ss_pred CCeEEEEECCCCCcceecccc---cceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCC-CceEEEecCC-----
Confidence 347889998876543221111 11233567777776655 6799999999988888776544 4555566542
Q ss_pred cEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEe-------CCCeEEEEEecC
Q psy9598 577 NYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGS-------GDHHVRVYKMDG 649 (1915)
Q Consensus 577 ~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs-------~Dg~I~IwDl~~ 649 (1915)
+.|+..+. ..|.-|++..... ....+.....+ ....|..-..+++.++++..| -.|.+.+|.+..
T Consensus 117 ~~l~lVT~-taVyHWsi~~~s~-P~kvFdR~~~L------~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er 188 (494)
T 1bpo_A 117 NTVALVTD-NAVYHWSMEGESQ-PVKMFDRHSSL------AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR 188 (494)
T ss_dssp TEEEEECS-SEEEEEESSSSCC-CEEEEECCGGG------TTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTT
T ss_pred CeEEEEcC-CeeEEecccCCCC-chhheecchhc------ccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccc
Confidence 45555553 5699999876322 12222211111 147788888999999877543 247788998842
Q ss_pred CCCCceeEEeccCCCCeeEEEEcCCC---CEEEEEeCC---CcEEEEEccCCceEEeeecccccCCCC--cccccccccc
Q psy9598 650 VDSPLGILEVEEHSDKVDSIQWSHSH---LRFVSGSRD---GTALIWYYKCSQWRFIRLDMNTCLPHT--KETSDETNKK 721 (1915)
Q Consensus 650 ~~~~~~i~~l~~h~~~V~sl~fspdg---~~L~sgs~D---G~I~IWDl~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 721 (1915)
.....+.||......+.+..+. ..|+.+... +.++|-++..... -....... ..........
T Consensus 189 ----~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~------~~~~f~kk~vdv~fppe~~~ 258 (494)
T 1bpo_A 189 ----KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPT------GNQPFPKKAVDVFFPPEAQN 258 (494)
T ss_dssp ----CCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCT------TCCCCCCEEEECCCCTTSTT
T ss_pred ----cccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCcc------CCCCccceeeeeeCCccccc
Confidence 2234567886655544433221 133333332 6788877743200 00000000 0000011122
Q ss_pred ccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCcc
Q psy9598 722 IKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQ 799 (1915)
Q Consensus 722 ~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~ 799 (1915)
.--.++..++....++.-+. -|.|++||+.+|.++..-+-....|+..+.+. ...=++.....|.|.--.+.....
T Consensus 259 DFPvamqvs~kygviyviTK-~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~-~~~Gi~~Vnr~GqVl~v~v~e~~i 334 (494)
T 1bpo_A 259 DFPVAMQISEKHDVVFLITK-YGYIHLYDLETGTCIYMNRISGETIFVTAPHE-ATAGIIGVNRKGQVLSVCVEEENI 334 (494)
T ss_dssp CCEEEEEEETTTTEEEEEET-TSEEEEEETTTCCEEEEEECCSSCEEEEEEET-TTTEEEEEETTCEEEEEEECTTTH
T ss_pred CceeEEEecccCCEEEEEec-CceEEEEecccceeeeeecccCCceEEecccC-CCCcEEEEccCceEEEEEEccccc
Confidence 33456777887777777776 89999999999999998887777777766665 334455555777776666655443
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=96.76 E-value=0.25 Score=59.02 Aligned_cols=211 Identities=10% Similarity=0.091 Sum_probs=123.5
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCc---EEEEEeC---CCeEEEEecccCcc-ccc
Q psy9598 529 RNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFN---YLASTST---DGCIGFWKYKLDID-ISK 601 (1915)
Q Consensus 529 dg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~---~L~sgs~---DgtI~iWDl~~~~~-~~~ 601 (1915)
...++++....+-+.|||+ +|+.++.+.. +.++.|..-|.-.-++. ++++... +++|++|++..... +..
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~ 115 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS 115 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEE
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceee
Confidence 4456666667788999999 8999988864 56777777662100111 2333333 57999997742211 111
Q ss_pred eecc-CccccccccCCCCCceEEEEE--CCC-Cc-EEEEEeCCCeEEEEEecCCC----CCceeEEeccCCCCeeEEEEc
Q psy9598 602 TVFH-EPVMFNERIRPGNAHILCSSF--SPG-GL-FLATGSGDHHVRVYKMDGVD----SPLGILEVEEHSDKVDSIQWS 672 (1915)
Q Consensus 602 ~~~~-~~~~~~~~~~~~~~~V~~l~f--spd-g~-~Lasgs~Dg~I~IwDl~~~~----~~~~i~~l~~h~~~V~sl~fs 672 (1915)
.... .+. ......++.+|+ ++. +. ++++...+|.+..|++.... ....+..+.- .+.+-.+...
T Consensus 116 i~~~~~pv------~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvD 188 (355)
T 3amr_A 116 MTDPDHPI------ATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAAD 188 (355)
T ss_dssp CSCTTSCE------ECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEE
T ss_pred ccccccCc------CCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEc
Confidence 1000 010 001134555666 774 43 68888889999999984321 2233444433 4578888888
Q ss_pred CCCCEEEEEeCCCcEEEEEccCCc---eEEeeecccccCCCCccccccccccccEEEEEE--CCCCC-EEEEEEecCCeE
Q psy9598 673 HSHLRFVSGSRDGTALIWYYKCSQ---WRFIRLDMNTCLPHTKETSDETNKKIKVTMVAW--DASDR-WVITAINFNFQI 746 (1915)
Q Consensus 673 pdg~~L~sgs~DG~I~IWDl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~--spdg~-~L~t~s~~Dg~I 746 (1915)
+...+|+.+-.+..|..++..... ...+. ..........+..|++ .++++ +|++++..++.+
T Consensus 189 d~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~------------~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~ 256 (355)
T 3amr_A 189 DEYGRLYIAEEDEAIWKFSAEPDGGSNGTVID------------RADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSY 256 (355)
T ss_dssp TTTTEEEEEETTTEEEEEECSTTSCSCCEEEE------------EBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEE
T ss_pred CCCCeEEEecccceEEEEeCCcCCCCCceEEE------------EecCCccccCcceEEEEecCCCCEEEEEEcCCCCEE
Confidence 888899999998654444433111 00000 0011112235666776 56666 888888668899
Q ss_pred EEEECC-CCceEEEee
Q psy9598 747 KIWDAF-NGDLVQVLK 761 (1915)
Q Consensus 747 ~vwD~~-tg~~i~~l~ 761 (1915)
.|||.. +.+.+..|.
T Consensus 257 ~Vydr~~~~~~vg~f~ 272 (355)
T 3amr_A 257 AIYDRQGKNKYVADFR 272 (355)
T ss_dssp EEEESSTTCCEEEEEE
T ss_pred EEEECCCCCcEEEEEE
Confidence 999986 556665554
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=96.67 E-value=0.11 Score=61.74 Aligned_cols=174 Identities=10% Similarity=0.047 Sum_probs=113.4
Q ss_pred eccCCCCeeEEEEcCCCCEEEEEe-CCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEE---CCCCC
Q psy9598 659 VEEHSDKVDSIQWSHSHLRFVSGS-RDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAW---DASDR 734 (1915)
Q Consensus 659 l~~h~~~V~sl~fspdg~~L~sgs-~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~---spdg~ 734 (1915)
+......--++.|+.....|+.++ ..|+|..|+...+....+.. +.. .........+..|.| .++++
T Consensus 8 ~~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~------~~~---s~~g~~~~~~sGl~~~~~D~~gr 78 (334)
T 2p9w_A 8 VKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVI------DGA---SSNGDGEQQMSGLSLLTHDNSKR 78 (334)
T ss_dssp ECCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECC------TTT---CCSSCCSEEEEEEEESSSSSCCE
T ss_pred ecCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEec------CCc---cccCCCcceeeEEEEeccCCCCc
Confidence 344444556788988666666666 78999999987554332210 000 000112234578999 68877
Q ss_pred EEEEEEe------------cCCeEEEEECC---CCceEEEee--CC-----------CCCeEEEEEccCCCCEEEEEecC
Q psy9598 735 WVITAIN------------FNFQIKIWDAF---NGDLVQVLK--GH-----------TNEVFVLESHPFDSRVLLSAGHD 786 (1915)
Q Consensus 735 ~L~t~s~------------~Dg~I~vwD~~---tg~~i~~l~--gH-----------~~~V~sl~~sp~dg~~LaSgs~D 786 (1915)
+++++.. .+..|..||+. +++.+.... .. ......+++.+ +|+..++++.-
T Consensus 79 L~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~-~GnaYVt~s~~ 157 (334)
T 2p9w_A 79 LFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDR-DGNSYVAFALG 157 (334)
T ss_dssp EEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECT-TSCEEEEEEES
T ss_pred EEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECC-CCCEEEeCCCC
Confidence 7775431 15789999999 887766554 11 12478999999 99999998888
Q ss_pred -ceEEEEECCCCccccceeee-eeecCCCCcceEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q psy9598 787 -GLIIIWDILSSKQRGYKWFH-NIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGG 845 (1915)
Q Consensus 787 -G~I~IWdl~s~~~~~~~~~~-~~~~~~~~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl~s 845 (1915)
+.|...+..... +..+. ...........+.++++|+|..|++....|.|..||+..
T Consensus 158 ~~~I~rV~pdG~~---~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 158 MPAIARVSADGKT---VSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp SCEEEEECTTSCC---EEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred CCeEEEEeCCCCE---EeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 887777765432 22221 110111223467899999999999998899999999883
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=96.58 E-value=0.85 Score=55.29 Aligned_cols=244 Identities=12% Similarity=0.024 Sum_probs=122.4
Q ss_pred CCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCC---CcEEEEE
Q psy9598 560 QGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPG---GLFLATG 636 (1915)
Q Consensus 560 ~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspd---g~~Lasg 636 (1915)
-...++|+|.|+ +. |+++..+|.|.+++. .+. ......+ ...........|+|+|+ +..|.++
T Consensus 28 l~~P~~ia~~pd----G~-l~V~e~~g~I~~~d~-~G~---~~~~~~~-----v~~~g~~g~~gia~~pdf~~~g~lyv~ 93 (354)
T 3a9g_A 28 LEVPWSIAPLGG----GR-YLVTERPGRLVLISP-SGK---KLVASFD-----VANVGEAGLLGLALHPEFPKKSWVYLY 93 (354)
T ss_dssp CSCEEEEEEEET----TE-EEEEETTTEEEEECS-SCE---EEEEECC-----CCCSTTCSEEEEEECTTTTTSCEEEEE
T ss_pred CCCCeEEEEcCC----Ce-EEEEeCCCEEEEEeC-CCc---eEeeccc-----eeecCCCceeeEEeCCCCCcCCEEEEE
Confidence 445789999984 35 555566699998873 332 1111111 11122356889999997 4444443
Q ss_pred eC----C----CeEEEEEecCCC-C---CceeEE-ecc-CCCCeeEEEEcCCCCEEEEEeCC-------------CcEEE
Q psy9598 637 SG----D----HHVRVYKMDGVD-S---PLGILE-VEE-HSDKVDSIQWSHSHLRFVSGSRD-------------GTALI 689 (1915)
Q Consensus 637 s~----D----g~I~IwDl~~~~-~---~~~i~~-l~~-h~~~V~sl~fspdg~~L~sgs~D-------------G~I~I 689 (1915)
.. + +.|..|+..... . ...+.. +.. .......|+|.|+|.++++.+.. |.|.-
T Consensus 94 ~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~r 173 (354)
T 3a9g_A 94 ASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILR 173 (354)
T ss_dssp EEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEE
T ss_pred EeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEE
Confidence 32 3 567777774321 0 111111 221 11234679999999866664332 22332
Q ss_pred EEccCCceEEeeecccccCCCCcc---ccccccccccEEEEEECC-CCCEEEEEEecCC--eEEEEECCC--------C-
Q psy9598 690 WYYKCSQWRFIRLDMNTCLPHTKE---TSDETNKKIKVTMVAWDA-SDRWVITAINFNF--QIKIWDAFN--------G- 754 (1915)
Q Consensus 690 WDl~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~V~~va~sp-dg~~L~t~s~~Dg--~I~vwD~~t--------g- 754 (1915)
++... ..+.... .............++|++ +|.++++-...+. .|.+..... +
T Consensus 174 i~~dG------------~~p~~npf~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~ 241 (354)
T 3a9g_A 174 VDEEG------------RPPADNPFPNSPIWSYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGK 241 (354)
T ss_dssp ECTTS------------CCCTTSSSTTCCEEEECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSC
T ss_pred EcCCC------------CCCCCCCCCCCcEEEEccCCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCC
Confidence 22211 0000000 000000112245689999 5554444332121 233322100 0
Q ss_pred -------ceEEEe-eCCCCCeEEEEEcc------CCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEE
Q psy9598 755 -------DLVQVL-KGHTNEVFVLESHP------FDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDG 820 (1915)
Q Consensus 755 -------~~i~~l-~gH~~~V~sl~~sp------~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~v 820 (1915)
.++..+ ..| .....++|.. .++.++++.-..+.|...++..... +.....++.+ ..+.+.++
T Consensus 242 ~~~~~~~~p~~~~~~~~-~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~--~~~~~~~~~~-~~~rp~~v 317 (354)
T 3a9g_A 242 AGRGEFVDPVIDTGSET-WAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNME--VRKISTFFKN-VFGRLRDV 317 (354)
T ss_dssp CCCTTSCCCSEECTTCC-CCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGC--EEEEEEECTT-TSCCEEEE
T ss_pred CCCCCCcCCEeecCCCC-cCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCc--ccceeeeccC-CCCCeeEE
Confidence 123333 223 3467788831 2567777766677888888875322 2112222222 24678999
Q ss_pred EEcCCCCEEEEEe
Q psy9598 821 KWSPDGTTCALTD 833 (1915)
Q Consensus 821 afSpdg~~Lasg~ 833 (1915)
++.|||.++++..
T Consensus 318 ~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 318 VIDDDGGILISTS 330 (354)
T ss_dssp EECTTSCEEEEEC
T ss_pred EECCCCcEEEEEe
Confidence 9999998777664
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=96.50 E-value=0.7 Score=56.04 Aligned_cols=239 Identities=13% Similarity=0.035 Sum_probs=120.9
Q ss_pred CCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCc-EEEEEe---CCCCCEEEEEEeCC---CCEEEEEeC----C----C
Q psy9598 476 LSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGK-LLATLR---GCSGEISDIAIDNR---NILLAAGTV----D----K 540 (1915)
Q Consensus 476 ~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~-~~~~l~---gH~~~I~~Lafspd---g~~LaSgs~----D----g 540 (1915)
...-++|+|.|+|++++ +..+|.|.+++ .++. .+..+. ........|+|+|+ +..|+.+.. + +
T Consensus 28 l~~P~~ia~~pdG~l~V-~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~ 105 (354)
T 3a9g_A 28 LEVPWSIAPLGGGRYLV-TERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN 105 (354)
T ss_dssp CSCEEEEEEEETTEEEE-EETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred CCCCeEEEEcCCCeEEE-EeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence 45678999999997555 55679999997 4565 222221 12356899999997 444544332 3 5
Q ss_pred cEEEEECCCC--c-----eE-EEeec-CCCCeEEEEeccCccCCCcEEEEEeCC-------------CeEEEEecccCcc
Q psy9598 541 TIRIWNLQTL--A-----PI-SVLVG-HQGIITGVNFCPLEVNGFNYLASTSTD-------------GCIGFWKYKLDID 598 (1915)
Q Consensus 541 tIrVWDl~tg--~-----~~-~~l~~-h~~~V~sl~fsp~~~~d~~~L~sgs~D-------------gtI~iWDl~~~~~ 598 (1915)
.|..|++... . .+ ..+.. .......|+|.|+ +.++++.+.. |.|.-++.....
T Consensus 106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pD----G~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~- 180 (354)
T 3a9g_A 106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPD----GMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRP- 180 (354)
T ss_dssp EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTT----SCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCC-
T ss_pred EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCC----CcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCC-
Confidence 6777777643 1 11 11221 1113467899884 3555554321 344444433210
Q ss_pred ccceeccCccccccccCCCCCceEEEEECC-CCcEEEEEeCCC---eEEEEEecCCC--------------CCceeEEec
Q psy9598 599 ISKTVFHEPVMFNERIRPGNAHILCSSFSP-GGLFLATGSGDH---HVRVYKMDGVD--------------SPLGILEVE 660 (1915)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~V~~l~fsp-dg~~Lasgs~Dg---~I~IwDl~~~~--------------~~~~i~~l~ 660 (1915)
....+......+..+......++|+| +|.++++-.... .|.+... +.. ....+..+.
T Consensus 181 ----p~~npf~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~-G~nyGwp~~~g~~~~~~~~~p~~~~~ 255 (354)
T 3a9g_A 181 ----PADNPFPNSPIWSYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIILK-GGNYGWPLATGKAGRGEFVDPVIDTG 255 (354)
T ss_dssp ----CTTSSSTTCCEEEECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEECT-TCBCCTTTCCSCCCCTTSCCCSEECT
T ss_pred ----CCCCCCCCCcEEEEccCCcceEEEeCCCCCEEEEecCCCCCcEEEEecC-CCcCCCCcccCCCCCCCCcCCEeecC
Confidence 00000000011111123456899999 666555433222 2333221 100 001222231
Q ss_pred cCCCCeeEEEEc-------CCCCEEEEEeCCCcEEEEEccCC-ceEEeeecccccCCCCccccccccccccEEEEEECCC
Q psy9598 661 EHSDKVDSIQWS-------HSHLRFVSGSRDGTALIWYYKCS-QWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDAS 732 (1915)
Q Consensus 661 ~h~~~V~sl~fs-------pdg~~L~sgs~DG~I~IWDl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spd 732 (1915)
........++|. .+|.+|++....+.|...++... ...... .........+..+++.|+
T Consensus 256 ~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~-------------~~~~~~~~rp~~v~~~pD 322 (354)
T 3a9g_A 256 SETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKIS-------------TFFKNVFGRLRDVVIDDD 322 (354)
T ss_dssp TCCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEE-------------EECTTTSCCEEEEEECTT
T ss_pred CCCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCccccee-------------eeccCCCCCeeEEEECCC
Confidence 123457788883 45666666666677777776542 111000 000112346788999999
Q ss_pred CCEEEEE
Q psy9598 733 DRWVITA 739 (1915)
Q Consensus 733 g~~L~t~ 739 (1915)
|.+.++.
T Consensus 323 G~lyv~~ 329 (354)
T 3a9g_A 323 GGILIST 329 (354)
T ss_dssp SCEEEEE
T ss_pred CcEEEEE
Confidence 8765554
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0048 Score=82.36 Aligned_cols=213 Identities=8% Similarity=-0.080 Sum_probs=118.5
Q ss_pred CceEEEEECCCCcEEEEE-eCCCeEEEEEecCCCC-CceeEEeccCCCCeeEEEEcCC-CCEEEEEeCCCcEEEEEccCC
Q psy9598 619 AHILCSSFSPGGLFLATG-SGDHHVRVYKMDGVDS-PLGILEVEEHSDKVDSIQWSHS-HLRFVSGSRDGTALIWYYKCS 695 (1915)
Q Consensus 619 ~~V~~l~fspdg~~Lasg-s~Dg~I~IwDl~~~~~-~~~i~~l~~h~~~V~sl~fspd-g~~L~sgs~DG~I~IWDl~~~ 695 (1915)
..+..++|++.+..|+.+ ...+.|+.+++.+... ......+.........|++.+. +.++++-...+.|.++++...
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 345678898866555554 4567899999854110 0111111111223566788754 445555566788999887755
Q ss_pred ceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecC-CeEEEEECCCCceEEEeeCCCCCeEEEEEcc
Q psy9598 696 QWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFN-FQIKIWDAFNGDLVQVLKGHTNEVFVLESHP 774 (1915)
Q Consensus 696 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~D-g~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp 774 (1915)
....+.. ........|+++|.+.+|+.+.... +.|.++++........+...-...+.|+|+|
T Consensus 486 ~~~~l~~----------------~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~ 549 (699)
T 1n7d_A 486 KRKTLFR----------------EQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDL 549 (699)
T ss_dssp CEEEECC----------------CSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECT
T ss_pred ceEEEEe----------------CCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEec
Confidence 4222110 0112235678888777666655323 6788877653222222222233467899998
Q ss_pred CCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcccccCC
Q psy9598 775 FDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGGFKRPQNIP 853 (1915)
Q Consensus 775 ~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl~s~~~~~~l~ 853 (1915)
..+.++++-+..+.|.++++..... ..+.. ..........+++..+ .++++....+.|..++..+++.+..+.
T Consensus 550 ~~~~LY~aD~~~~~I~~~d~dG~~~---~~~~~--~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~ 622 (699)
T 1n7d_A 550 LSGRLYWVDSKLHSISSIDVNGGNR---KTILE--DEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLA 622 (699)
T ss_dssp TTCCEEEEETTTTEEEEECSSSSCC---EEECC--CSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCC
T ss_pred cCCEEEEEecCCCeEEEEccCCCce---EEEEe--cCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEee
Confidence 5567777777788999999975433 22211 0111223445555443 334444456789999987776655553
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=96.46 E-value=0.01 Score=79.26 Aligned_cols=228 Identities=12% Similarity=-0.051 Sum_probs=124.9
Q ss_pred CCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCC
Q psy9598 539 DKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGN 618 (1915)
Q Consensus 539 DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~ 618 (1915)
.+.|++.++.+......+.. ...+.+|+|.+.. +.++++-...+.|..+++.+........ ..+....
T Consensus 385 ~~~I~~id~~~~~~~~~~~~-~~~p~gla~d~~~---~~Ly~sD~~~~~I~~~~~~g~~~~~~~~--------~~i~~~~ 452 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVAS---NRIYWSDLSQRMICSTQLDRAHGVSSYD--------TVISRDI 452 (699)
T ss_dssp TTC-CEECTTSCCEECCSCC-CTTCCCCEEETTT---TEEEECCTTTTSBEEEESCCCCC-CCCC--------CBCCSCC
T ss_pred ccceEEEeCCCCcceeeecc-CcceEEEcccccc---CeEEEEecCCCeEEEEecCCCCCCcceE--------EEEeCCC
Confidence 45788888877655444332 3456788898732 3444444566788888886521000000 0000111
Q ss_pred CceEEEEECCC-CcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEe-CC-CcEEEEEccCC
Q psy9598 619 AHILCSSFSPG-GLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGS-RD-GTALIWYYKCS 695 (1915)
Q Consensus 619 ~~V~~l~fspd-g~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs-~D-G~I~IWDl~~~ 695 (1915)
.....|++.+. +.++++-...+.|.++++.+.. ....+.........|+++|.+.+|+.+. .. +.|.++++...
T Consensus 453 ~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~---~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~ 529 (699)
T 1n7d_A 453 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK---RKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV 529 (699)
T ss_dssp --CCCEECCCSSSBCEECCTTTSCEEEEBSSSCC---EEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSC
T ss_pred CCcceEEEEeeCCcEEEEeccCCeEEEEecCCCc---eEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCC
Confidence 23456788754 4555555667889999884321 1111222234567888988655444433 22 56666655432
Q ss_pred ceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeC--CCCCeEEEEEc
Q psy9598 696 QWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKG--HTNEVFVLESH 773 (1915)
Q Consensus 696 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~g--H~~~V~sl~~s 773 (1915)
....+. .......+.|+|++++..|+.+....+.|.++++........+.. ......+|++.
T Consensus 530 ~~~~l~----------------~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd 593 (699)
T 1n7d_A 530 DIYSLV----------------TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF 593 (699)
T ss_dssp CCCEES----------------CSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEE
T ss_pred CeeEEE----------------eCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEE
Confidence 211100 001223456999998888887776678999999864333333221 12233455554
Q ss_pred cCCCCEEEEEecCceEEEEECCCCcc
Q psy9598 774 PFDSRVLLSAGHDGLIIIWDILSSKQ 799 (1915)
Q Consensus 774 p~dg~~LaSgs~DG~I~IWdl~s~~~ 799 (1915)
. +.++++....+.|..++..++..
T Consensus 594 ~--~~lywtd~~~~~V~~~d~~~G~~ 617 (699)
T 1n7d_A 594 E--DKVFWTDIINEAIFSANRLTGSD 617 (699)
T ss_dssp T--TEEEEECSTTTCEEEEETTTEEE
T ss_pred C--CEEEEEeCCCCeEEEEEccCCCc
Confidence 4 35566666677888888766654
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=96.41 E-value=2.8 Score=51.13 Aligned_cols=262 Identities=8% Similarity=0.061 Sum_probs=149.7
Q ss_pred CCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCC
Q psy9598 539 DKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGN 618 (1915)
Q Consensus 539 DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~ 618 (1915)
+..|.|.|+..+..+..-.-. --+.-.+|.. ..|+.-. ..++.+||+.+...+....+..+
T Consensus 47 ~~~vvIiDl~~~~~~~rrpi~---AdsAIMnP~~----~iiALra-g~~lQiFnle~K~klks~~~~e~----------- 107 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNPIRRPIS---ADSAIMNPAS----KVIALKA-GKTLQIFNIEMKSKMKAHTMTDD----------- 107 (494)
T ss_dssp CCEEEEEETTSTTSCEEEECC---CSEEEECSSS----SCEEEEE-TTEEEEEETTTTEEEEEEECSSC-----------
T ss_pred CCeEEEEECCCCCcceecccc---cceeeeCCCC----cEEEEec-CCeEEEEchHHhhhhcceecCCC-----------
Confidence 347888888876544221111 1234456643 5555554 78999999999877766666532
Q ss_pred CceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccC--CCCeeEEEEcCCCCEEEEEe-------CCCcEEE
Q psy9598 619 AHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEH--SDKVDSIQWSHSHLRFVSGS-------RDGTALI 689 (1915)
Q Consensus 619 ~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h--~~~V~sl~fspdg~~L~sgs-------~DG~I~I 689 (1915)
|.--.|-... .|+.. .+..|+.|++.+...+..++...+. ...|..-..+++.++++..+ -.|.+.+
T Consensus 108 --VvfWkWis~~-~l~lV-T~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQL 183 (494)
T 1bpo_A 108 --VTFWKWISLN-TVALV-TDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQL 183 (494)
T ss_dssp --CCEEEEEETT-EEEEE-CSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEE
T ss_pred --ceEEEecCCC-eEEEE-cCCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEE
Confidence 3333443333 23333 2458999999765556655544322 34566677788888776544 2367888
Q ss_pred EEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCC--CEEEE-EEe--cCCeEEEEECCCC---c------
Q psy9598 690 WYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASD--RWVIT-AIN--FNFQIKIWDAFNG---D------ 755 (1915)
Q Consensus 690 WDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg--~~L~t-~s~--~Dg~I~vwD~~tg---~------ 755 (1915)
|....+.... ..+|......+.+..+. ..|++ +.. ..+.++|.++... .
T Consensus 184 YS~er~~sQ~-----------------ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk 246 (494)
T 1bpo_A 184 YSVDRKVSQP-----------------IEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKK 246 (494)
T ss_dssp EESTTCCEEE-----------------ECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCE
T ss_pred eeccccccch-----------------heeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccce
Confidence 8776654222 12222222222221111 11221 111 1367888887532 1
Q ss_pred eEEEee---CCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEE
Q psy9598 756 LVQVLK---GHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALT 832 (1915)
Q Consensus 756 ~i~~l~---gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg 832 (1915)
.+..+- .-.+--.++.+++ ...++..-..-|.|++||+.++.+ +..-. .....|+..+-+....=+++.
T Consensus 247 ~vdv~fppe~~~DFPvamqvs~-kygviyviTK~G~i~lyDleTgt~--i~~nr-----Is~~~iF~t~~~~~~~Gi~~V 318 (494)
T 1bpo_A 247 AVDVFFPPEAQNDFPVAMQISE-KHDVVFLITKYGYIHLYDLETGTC--IYMNR-----ISGETIFVTAPHEATAGIIGV 318 (494)
T ss_dssp EEECCCCTTSTTCCEEEEEEET-TTTEEEEEETTSEEEEEETTTCCE--EEEEE-----CCSSCEEEEEEETTTTEEEEE
T ss_pred eeeeeCCcccccCceeEEEecc-cCCEEEEEecCceEEEEeccccee--eeeec-----ccCCceEEecccCCCCcEEEE
Confidence 111111 1133446777888 777888899999999999999988 33222 233556666666655556666
Q ss_pred eCCCeEEEEeCCCCcc
Q psy9598 833 DSYGHLLVYGLGGFKR 848 (1915)
Q Consensus 833 ~~dG~I~Iwdl~s~~~ 848 (1915)
...|.|.-..++....
T Consensus 319 nr~GqVl~v~v~e~~i 334 (494)
T 1bpo_A 319 NRKGQVLSVCVEEENI 334 (494)
T ss_dssp ETTCEEEEEEECTTTH
T ss_pred ccCceEEEEEEccccc
Confidence 6778887777766543
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.26 E-value=1.1 Score=54.38 Aligned_cols=243 Identities=11% Similarity=0.054 Sum_probs=121.2
Q ss_pred CCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCC---CcEEEEE
Q psy9598 560 QGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPG---GLFLATG 636 (1915)
Q Consensus 560 ~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspd---g~~Lasg 636 (1915)
-...++|+|.|+ +. |+++..+|.|.+++ .+.. ......+ ...........++|+|+ +..|.++
T Consensus 30 l~~P~~ia~~pd----G~-l~V~e~~g~I~~i~--~g~~--~~~~~~~-----v~~~g~~~p~gia~~pdf~~~g~lYv~ 95 (352)
T 2ism_A 30 LEVPWALAFLPD----GG-MLIAERPGRIRLFR--EGRL--STYAELS-----VYHRGESGLLGLALHPRFPQEPYVYAY 95 (352)
T ss_dssp CSCEEEEEECTT----SC-EEEEETTTEEEEEE--TTEE--EEEEECC-----CCCSTTCSEEEEEECTTTTTSCEEEEE
T ss_pred CCCceEEEEcCC----Ce-EEEEeCCCeEEEEE--CCCc--cEeecce-----EeecCCCCceeEEECCCCCCCCEEEEE
Confidence 345689999984 35 45556679999988 3321 1111111 11123356889999998 4444444
Q ss_pred eC-C-----CeEEEEEecCCC--CCceeEE-ec---cCCCCeeEEEEcCCCCEEEEEeCC-------------CcEEEEE
Q psy9598 637 SG-D-----HHVRVYKMDGVD--SPLGILE-VE---EHSDKVDSIQWSHSHLRFVSGSRD-------------GTALIWY 691 (1915)
Q Consensus 637 s~-D-----g~I~IwDl~~~~--~~~~i~~-l~---~h~~~V~sl~fspdg~~L~sgs~D-------------G~I~IWD 691 (1915)
.. . +.|..|+..... ....+.. +. +.......|+|.|+|.++++.+.. |.|.-++
T Consensus 96 ~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~ 175 (352)
T 2ism_A 96 RTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLT 175 (352)
T ss_dssp EEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEEC
T ss_pred EecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEc
Confidence 33 2 577788874321 1111221 32 111234689999999766654322 3333333
Q ss_pred ccCCceEEeeecccccCCCCcc--------ccccccccccEEEEEECC-CCCEEEEEEecCCe--------EEEEECCC-
Q psy9598 692 YKCSQWRFIRLDMNTCLPHTKE--------TSDETNKKIKVTMVAWDA-SDRWVITAINFNFQ--------IKIWDAFN- 753 (1915)
Q Consensus 692 l~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~V~~va~sp-dg~~L~t~s~~Dg~--------I~vwD~~t- 753 (1915)
... ..+.... .............++|++ +|.++++-.. ... |.+.....
T Consensus 176 ~dG------------~~p~~npf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g-~~~~~~~~~dei~~i~~G~n 242 (352)
T 2ism_A 176 PEG------------EPAPGNPFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHG-PSGEQGYGHDEVNLIVPGGN 242 (352)
T ss_dssp TTS------------SBCTTCTTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEEC-C------CCCEEEEECTTCB
T ss_pred CCC------------CCCCCCcccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcC-CCCCCCCCCeEEEEeccCCc
Confidence 221 0000000 000000112356689999 5555444333 332 33322110
Q ss_pred ---------------CceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCcccc-ceeeeeeecCCCCcce
Q psy9598 754 ---------------GDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRG-YKWFHNIVEGQGEGAL 817 (1915)
Q Consensus 754 ---------------g~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~-~~~~~~~~~~~~~~~V 817 (1915)
..++..+..| .....++|. ++.++++.-..+.|...++....... ......++ ...+.+
T Consensus 243 yGwp~~~g~~~~~~~~~p~~~~~~~-~ap~G~~~~--~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~--~~~~rp 317 (352)
T 2ism_A 243 YGWPRVVGRGNDPRYRDPLYFWPQG-FPPGNLAFF--RGDLYVAGLRGQALLRLVLEGERGRWRVLRVETAL--SGFGRL 317 (352)
T ss_dssp CCTTTCCSCCCCTTSCCCSEECTTC-CCEEEEEEE--TTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEE--ESSCCE
T ss_pred CCCCcccCCCCCCCCcCCeEecCCC-CCCcceEEE--CCEEEEEECCCCEEEEEEECCCCcceeecchheec--ccCCCe
Confidence 0123333223 345677773 56777666667778877776443200 00112222 123678
Q ss_pred EEEEEcCCCCEEEEEeC
Q psy9598 818 FDGKWSPDGTTCALTDS 834 (1915)
Q Consensus 818 ~~vafSpdg~~Lasg~~ 834 (1915)
.++++.|||.++++...
T Consensus 318 ~~v~~~pdG~lyv~~~~ 334 (352)
T 2ism_A 318 REVQVGPDGALYVTTSN 334 (352)
T ss_dssp EEEEECTTSCEEEEECS
T ss_pred eEEEECCCCcEEEEEeC
Confidence 99999999987777643
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=96.20 E-value=1.2 Score=55.82 Aligned_cols=104 Identities=11% Similarity=0.064 Sum_probs=60.7
Q ss_pred CCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEE--EEEeC------CCCCEEEEEEeCC---CCEEEEEe-C-----
Q psy9598 476 LSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLL--ATLRG------CSGEISDIAIDNR---NILLAAGT-V----- 538 (1915)
Q Consensus 476 ~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~--~~l~g------H~~~I~~Lafspd---g~~LaSgs-~----- 538 (1915)
...-++|+|.|+|+++++-...+.|.+++..++... ..+.. ..+.+..|+|+|+ +..|..+. .
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 456779999999997776544457998887666543 23321 2456889999995 44454443 2
Q ss_pred -------CCcEEEEECCCC--c-----eEEE-ee-cCCCCeEEEEeccCccCCCcEEEEEe
Q psy9598 539 -------DKTIRIWNLQTL--A-----PISV-LV-GHQGIITGVNFCPLEVNGFNYLASTS 583 (1915)
Q Consensus 539 -------DgtIrVWDl~tg--~-----~~~~-l~-~h~~~V~sl~fsp~~~~d~~~L~sgs 583 (1915)
...|.-|++..+ . .+.. +. ........|+|.|+ +.++++.+
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pD----G~Lyv~~G 162 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPD----QKIYYTIG 162 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTT----SCEEEEEC
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCC----CeEEEEEC
Confidence 134555554322 1 1111 21 11234688999984 35555544
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=96.19 E-value=1.2 Score=54.01 Aligned_cols=250 Identities=10% Similarity=0.031 Sum_probs=121.6
Q ss_pred CcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEE-------eCCCCCEEEEEEeCC---CCEEEEE-eC-------
Q psy9598 477 SAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATL-------RGCSGEISDIAIDNR---NILLAAG-TV------- 538 (1915)
Q Consensus 477 ~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l-------~gH~~~I~~Lafspd---g~~LaSg-s~------- 538 (1915)
..-+.|+|.|+|++|+++...|.|++++. .+.....+ .........|+|+|+ +..|..+ +.
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~-~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~ 96 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQA-GKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA 96 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEET-TTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeC-CCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence 45689999999993445567899999985 44332111 112346789999996 4444443 32
Q ss_pred CCcEEEEECCCC--c--eEEE-eec------CCCCeEEEEeccCccCCCcEEEEEeCC-------------CeEEEEecc
Q psy9598 539 DKTIRIWNLQTL--A--PISV-LVG------HQGIITGVNFCPLEVNGFNYLASTSTD-------------GCIGFWKYK 594 (1915)
Q Consensus 539 DgtIrVWDl~tg--~--~~~~-l~~------h~~~V~sl~fsp~~~~d~~~L~sgs~D-------------gtI~iWDl~ 594 (1915)
...|..|++..+ . .... +.. .......|+|.|+ +.++++.+.. |.|.-++..
T Consensus 97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pd----G~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~d 172 (353)
T 2g8s_A 97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGK----GYLFIALGENNQRPTAQDLDKLQGKLVRLTDQ 172 (353)
T ss_dssp EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSS----SEEEEEECCTTCGGGGGCTTSCTTEEEEEETT
T ss_pred eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCC----CcEEEEECCCCCCCccCCCCCCCeEEEEECCC
Confidence 235666666533 1 1111 111 1112357999984 3555554332 345555544
Q ss_pred cCccccceecc-CccccccccCCCCCceEEEEECC-CCcEEEEEeC-CCeEEEEEecCCCC-------------------
Q psy9598 595 LDIDISKTVFH-EPVMFNERIRPGNAHILCSSFSP-GGLFLATGSG-DHHVRVYKMDGVDS------------------- 652 (1915)
Q Consensus 595 ~~~~~~~~~~~-~~~~~~~~~~~~~~~V~~l~fsp-dg~~Lasgs~-Dg~I~IwDl~~~~~------------------- 652 (1915)
.... ....+. ........+..+......++|+| +|.++++-.. ++.=.|.-+.....
T Consensus 173 G~~p-~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~ 251 (353)
T 2g8s_A 173 GEIP-DDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPE 251 (353)
T ss_dssp SCCC-TTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTT
T ss_pred CCCC-CCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCc
Confidence 2210 000000 00000111111224578899999 5655444222 11112222111000
Q ss_pred ---------CceeEEeccCCCCeeEEEEcC-------CCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccc
Q psy9598 653 ---------PLGILEVEEHSDKVDSIQWSH-------SHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSD 716 (1915)
Q Consensus 653 ---------~~~i~~l~~h~~~V~sl~fsp-------dg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~ 716 (1915)
...+..+. +...+..++|.. +|.+|++....+.|...++..+...... . .
T Consensus 252 ~~~~~~~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~-~------------~ 317 (353)
T 2g8s_A 252 AKGEIVAGTEQPVFYWK-DSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDG-R------------I 317 (353)
T ss_dssp CCBSSCTTSCCCSEEES-SCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEE-E------------E
T ss_pred ccCCCCCCccCCeEEeC-CCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeE-E------------c
Confidence 01112222 234566777753 4566666666677777766644311100 0 0
Q ss_pred cccccccEEEEEECCCCCEEEEEEecCCeE
Q psy9598 717 ETNKKIKVTMVAWDASDRWVITAINFNFQI 746 (1915)
Q Consensus 717 ~~~~~~~V~~va~spdg~~L~t~s~~Dg~I 746 (1915)
.......+..|++.|+|.+.++....+|.|
T Consensus 318 ~~~~~~rp~~v~~~pdG~lyv~td~~~g~I 347 (353)
T 2g8s_A 318 LTDRGQRIRDVRTGPDGYLYVLTDESSGEL 347 (353)
T ss_dssp SGGGCCCEEEEEECTTSCEEEEECSTTEEE
T ss_pred ccCCCCceeEEEECCCCcEEEEEeCCCCEE
Confidence 011234688999999998666544224443
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.13 E-value=0.25 Score=58.19 Aligned_cols=190 Identities=11% Similarity=0.130 Sum_probs=95.5
Q ss_pred CCEEEEEE-CC-----CcEEEEECCCCcEEEE--EeCCCCCEEEEEEeCCCCEEEEEeCC-----CcEEEEECCCCc---
Q psy9598 488 GEVIVTGA-DD-----LLIKLWRARDGKLLAT--LRGCSGEISDIAIDNRNILLAAGTVD-----KTIRIWNLQTLA--- 551 (1915)
Q Consensus 488 g~~LaTGs-~D-----g~I~IWd~~tg~~~~~--l~gH~~~I~~Lafspdg~~LaSgs~D-----gtIrVWDl~tg~--- 551 (1915)
+.+++.|+ .+ ..+.+||+.+..-... +........++ ..++.+++.|+.+ ..+.+||+.+..
T Consensus 15 ~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~--~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~ 92 (301)
T 2vpj_A 15 EVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASV--SLHDRIYVIGGYDGRSRLSSVECLDYTADEDGV 92 (301)
T ss_dssp EEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEE--EETTEEEEECCBCSSCBCCCEEEEETTCCTTCC
T ss_pred CEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEE--EECCEEEEEcCCCCCccCceEEEEECCCCCCCe
Confidence 44555555 22 3688899887753331 11111111222 2356677777754 468999988765
Q ss_pred eEEE--eecCCCCeEEEEeccCccCCCcEEEEEeCCC-----eEEEEecccCccccceeccCccccccccCCCCCceEEE
Q psy9598 552 PISV--LVGHQGIITGVNFCPLEVNGFNYLASTSTDG-----CIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCS 624 (1915)
Q Consensus 552 ~~~~--l~~h~~~V~sl~fsp~~~~d~~~L~sgs~Dg-----tI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l 624 (1915)
-... +........++.+ ++.+++.|+.++ .+.+||+.+......... +. +. ....++
T Consensus 93 W~~~~~~p~~r~~~~~~~~------~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~--p~-------~r-~~~~~~ 156 (301)
T 2vpj_A 93 WYSVAPMNVRRGLAGATTL------GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDM--QT-------AR-EGAGLV 156 (301)
T ss_dssp CEEECCCSSCCBSCEEEEE------TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEEC--SS-------CC-BSCEEE
T ss_pred eEECCCCCCCccceeEEEE------CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCC--CC-------Cc-ccceEE
Confidence 2222 2111111122222 236777776543 577888776542211111 10 11 111222
Q ss_pred EECCCCcEEEEEeCC-----CeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCC-----CcEEEEEccC
Q psy9598 625 SFSPGGLFLATGSGD-----HHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRD-----GTALIWYYKC 694 (1915)
Q Consensus 625 ~fspdg~~Lasgs~D-----g~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~D-----G~I~IWDl~~ 694 (1915)
.+ ++.+++.|+.+ ..+.+||+... ....+..+........++.+ ++.+++.|+.+ ..+.+||+.+
T Consensus 157 ~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~-~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~ 231 (301)
T 2vpj_A 157 VA--SGVIYCLGGYDGLNILNSVEKYDPHTG-HWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRT 231 (301)
T ss_dssp EE--TTEEEEECCBCSSCBCCCEEEEETTTT-EEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTT
T ss_pred EE--CCEEEEECCCCCCcccceEEEEeCCCC-cEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCC
Confidence 22 67777777765 35788887432 22222111111111122222 56677777764 4689999999
Q ss_pred CceEEe
Q psy9598 695 SQWRFI 700 (1915)
Q Consensus 695 ~~~~~~ 700 (1915)
..|...
T Consensus 232 ~~W~~~ 237 (301)
T 2vpj_A 232 DSWTTV 237 (301)
T ss_dssp TEEEEE
T ss_pred CcEEEC
Confidence 998764
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=96.12 E-value=1.7 Score=52.24 Aligned_cols=266 Identities=12% Similarity=0.035 Sum_probs=125.4
Q ss_pred EEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEE--Ee----ecCCCCeEEEEeccCccCCCcEEEEE--eC
Q psy9598 513 TLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPIS--VL----VGHQGIITGVNFCPLEVNGFNYLAST--ST 584 (1915)
Q Consensus 513 ~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~--~l----~~h~~~V~sl~fsp~~~~d~~~L~sg--s~ 584 (1915)
.+...-.....|+|.|+|.+|++--..|.|++++..++.... .+ ....+....|+|+|+-..++.+.++- ..
T Consensus 26 ~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~ 105 (347)
T 3das_A 26 TVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSAS 105 (347)
T ss_dssp EEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSS
T ss_pred EeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCC
Confidence 343344567899999999988776558999999876665422 22 12345678999998521122333332 23
Q ss_pred CCeEEEEecccCccccceeccCcccccccc-CCCCCceEEEEECCCCcEEEEEeC-------------CCeEEEEEecCC
Q psy9598 585 DGCIGFWKYKLDIDISKTVFHEPVMFNERI-RPGNAHILCSSFSPGGLFLATGSG-------------DHHVRVYKMDGV 650 (1915)
Q Consensus 585 DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~-~~~~~~V~~l~fspdg~~Lasgs~-------------Dg~I~IwDl~~~ 650 (1915)
++.|.-|.+..+.... ............+ .........|.|.|+|.+.++.+. .|.|.-++.++.
T Consensus 106 ~~~v~R~~~~~~~~~~-~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ 184 (347)
T 3das_A 106 DNRIVRMLYDEKKPSG-EQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGE 184 (347)
T ss_dssp SEEEEEEEBCTTSCTT-CCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSS
T ss_pred CCEEEEEEeCCCCccc-ccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCC
Confidence 4555556554421000 0000000000000 011123457999999987776442 244444444321
Q ss_pred C---C---CceeEEeccCCCCeeEEEEcCCCCEEEEE-eCCCcEEEEEccCCceEEeeecccc-cCCCC-cccccccccc
Q psy9598 651 D---S---PLGILEVEEHSDKVDSIQWSHSHLRFVSG-SRDGTALIWYYKCSQWRFIRLDMNT-CLPHT-KETSDETNKK 721 (1915)
Q Consensus 651 ~---~---~~~i~~l~~h~~~V~sl~fspdg~~L~sg-s~DG~I~IWDl~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~ 721 (1915)
- . ...+. ..+|.+ ...|+|+|+|.++++= +.|+.-.|--+..+...-....... ..... ........+.
T Consensus 185 ip~~nPf~~~~i~-a~G~RN-p~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~ 262 (347)
T 3das_A 185 PAPGNPFPGSPVY-SYGHRN-VQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDE 262 (347)
T ss_dssp BCTTCSSTTCCEE-EBCCSB-CCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTT
T ss_pred ccCCCCCCCCeEE-eeCCCC-cceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCC
Confidence 0 0 11122 235543 5688999988755543 2333233332332221000000000 00000 0000011111
Q ss_pred ccEEEEEECCCCCEEEEEEecCCeEEEEECCCCc----eEEEeeCCCCCeEEEEEccCCCCEEEEEe
Q psy9598 722 IKVTMVAWDASDRWVITAINFNFQIKIWDAFNGD----LVQVLKGHTNEVFVLESHPFDSRVLLSAG 784 (1915)
Q Consensus 722 ~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~----~i~~l~gH~~~V~sl~~sp~dg~~LaSgs 784 (1915)
.....++|. +|..++.... .+.|....+.... ....+.+..+.+..|++.| +|.++++..
T Consensus 263 ~ap~G~~~~-~g~~~~~~l~-~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~p-DG~lyv~td 326 (347)
T 3das_A 263 ASPSGIAYA-EGSVWMAGLR-GERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAG-GDKLWLVTS 326 (347)
T ss_dssp CCEEEEEEE-TTEEEEEEST-TCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEE-TTEEEEEEC
T ss_pred CCCcceEEE-cCceeecccc-CCEEEEEEecCCceecceEEeecCCCCCccEEEECC-CCcEEEEEc
Confidence 244556665 3444444333 5556555554332 2233444456788888888 776655543
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=95.92 E-value=0.74 Score=55.62 Aligned_cols=193 Identities=12% Similarity=0.075 Sum_probs=106.7
Q ss_pred EEEEEEcCCCCEEEEE------------ECCCcEEEEECCC--CcEE-EEEeC-----CCCCEEEEEEeC--CCC-EEEE
Q psy9598 479 VFCVLFDKLGEVIVTG------------ADDLLIKLWRARD--GKLL-ATLRG-----CSGEISDIAIDN--RNI-LLAA 535 (1915)
Q Consensus 479 V~~vafspdg~~LaTG------------s~Dg~I~IWd~~t--g~~~-~~l~g-----H~~~I~~Lafsp--dg~-~LaS 535 (1915)
.-.|++.++|..++++ ..+|.|.++|+.+ ++.. ..+.+ .......|.+.+ ++. +|+.
T Consensus 52 ~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~V 131 (355)
T 3sre_A 52 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV 131 (355)
T ss_dssp CCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred cceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEE
Confidence 3455667776444443 1689999999873 3321 12333 123567777765 454 4444
Q ss_pred E-eC--CCcEEEEECCCCce----EEEeecC-CCCeEEEEeccCccCCCcEEEEEeC-----------------CCeEEE
Q psy9598 536 G-TV--DKTIRIWNLQTLAP----ISVLVGH-QGIITGVNFCPLEVNGFNYLASTST-----------------DGCIGF 590 (1915)
Q Consensus 536 g-s~--DgtIrVWDl~tg~~----~~~l~~h-~~~V~sl~fsp~~~~d~~~L~sgs~-----------------DgtI~i 590 (1915)
+ .. +.+|.||++..+.. +..+.+. -...+.+.+.+. +.++++... .|.|..
T Consensus 132 vnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~----G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr 207 (355)
T 3sre_A 132 VNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGP----EHFYATNDHYFIDPYLKSWEMHLGLAWSFVTY 207 (355)
T ss_dssp EECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEET----TEEEEEESCSCSSHHHHHHHHHTTCCCEEEEE
T ss_pred EECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCC----CCEEecCCcEeCCcccccchhhccCCccEEEE
Confidence 4 22 56788888764322 2233332 245788888874 355555431 133333
Q ss_pred EecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEe-CCCeEEEEEecCCCCCceeEEeccCCCCeeEE
Q psy9598 591 WKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGS-GDHHVRVYKMDGVDSPLGILEVEEHSDKVDSI 669 (1915)
Q Consensus 591 WDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs-~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl 669 (1915)
++. +.. . .. ...-...+.++|+|+++.|+++. ..+.|..|++...........+ ...+....+
T Consensus 208 ~d~--~~~-~-~~-----------~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi 271 (355)
T 3sre_A 208 YSP--NDV-R-VV-----------AEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNI 271 (355)
T ss_dssp ECT--TCC-E-EE-----------EEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEE
T ss_pred EEC--CeE-E-Ee-----------ecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceE
Confidence 332 211 0 00 01124568899999998776654 5689999999643222222223 234667889
Q ss_pred EEcC-CCCEEEEEeCC-CcEEEEE
Q psy9598 670 QWSH-SHLRFVSGSRD-GTALIWY 691 (1915)
Q Consensus 670 ~fsp-dg~~L~sgs~D-G~I~IWD 691 (1915)
++.. +|.+.+++..+ +.|..|+
T Consensus 272 ~vD~e~G~lwva~~~~g~~v~~~~ 295 (355)
T 3sre_A 272 SVDPVTGDLWVGCHPNGMRIFFYD 295 (355)
T ss_dssp EECTTTCCEEEEEESCHHHHHSCC
T ss_pred EEeCCCCcEEEEecCCceEEEEEC
Confidence 9998 59877766544 3444443
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=95.89 E-value=5.6 Score=49.75 Aligned_cols=116 Identities=14% Similarity=0.021 Sum_probs=63.1
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceE--EEeec------CCCCeEEEEeccCccCCCcEEEEEeC-----
Q psy9598 518 SGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPI--SVLVG------HQGIITGVNFCPLEVNGFNYLASTST----- 584 (1915)
Q Consensus 518 ~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~--~~l~~------h~~~V~sl~fsp~~~~d~~~L~sgs~----- 584 (1915)
-.....|+|.|+|+++++-...+.|++++..++... ..+.. ..+.+..|+|+|+-..++.+.++-+.
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 345679999999998877554457888887655532 22221 23567799999953223344444332
Q ss_pred -------CCeEEEEecccCccccceeccCcccccccc-CCCCCceEEEEECCCCcEEEEEe
Q psy9598 585 -------DGCIGFWKYKLDIDISKTVFHEPVMFNERI-RPGNAHILCSSFSPGGLFLATGS 637 (1915)
Q Consensus 585 -------DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~-~~~~~~V~~l~fspdg~~Lasgs 637 (1915)
...|.-|++..... .+. ....+...+ .........|+|.|+|.+.++.+
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~--~~~--~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTD--TLE--KPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTT--EEE--EEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred CccccccccEEEEEEECCCCC--CcC--CcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence 23455555433211 000 000000000 11123478899999998777644
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.81 E-value=0.29 Score=57.71 Aligned_cols=228 Identities=11% Similarity=0.048 Sum_probs=112.2
Q ss_pred CEEEEEEC--CCcEEEEECCCCcEEEE--EeCCCCCEEEEEEeCCCCEEEEEeCC----CcEEEEECCCCceEEE--eec
Q psy9598 489 EVIVTGAD--DLLIKLWRARDGKLLAT--LRGCSGEISDIAIDNRNILLAAGTVD----KTIRIWNLQTLAPISV--LVG 558 (1915)
Q Consensus 489 ~~LaTGs~--Dg~I~IWd~~tg~~~~~--l~gH~~~I~~Lafspdg~~LaSgs~D----gtIrVWDl~tg~~~~~--l~~ 558 (1915)
.+++.|+. ...+.+||..+..-... +......-.++. -++.+++.|+.+ ..+.+||+.+..-... +..
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~ 90 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF--WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPT 90 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEE--ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSS
T ss_pred eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEE--ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCc
Confidence 34555554 35788999887754322 111111112222 356677777754 5688899887653222 211
Q ss_pred CCCCeEEEEeccCccCCCcEEEEEeCC------CeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcE
Q psy9598 559 HQGIITGVNFCPLEVNGFNYLASTSTD------GCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLF 632 (1915)
Q Consensus 559 h~~~V~sl~fsp~~~~d~~~L~sgs~D------gtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~ 632 (1915)
......++.+ ++.+++.|+.+ ..+.+||+.+...... ...+. +. ....++.+ ++.+
T Consensus 91 ~r~~~~~~~~------~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~--~~~p~-------~r-~~~~~~~~--~~~i 152 (306)
T 3ii7_A 91 PRDSLAACAA------EGKIYTSGGSEVGNSALYLFECYDTRTESWHTK--PSMLT-------QR-CSHGMVEA--NGLI 152 (306)
T ss_dssp CCBSCEEEEE------TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEE--CCCSS-------CC-BSCEEEEE--TTEE
T ss_pred cccceeEEEE------CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeC--CCCcC-------Cc-ceeEEEEE--CCEE
Confidence 1111122222 23677777765 4578888876642111 11010 00 11122222 6667
Q ss_pred EEEEeC---------CCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCC-----CcEEEEEccCCceE
Q psy9598 633 LATGSG---------DHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRD-----GTALIWYYKCSQWR 698 (1915)
Q Consensus 633 Lasgs~---------Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~D-----G~I~IWDl~~~~~~ 698 (1915)
++.|+. -..+.+||+... ....+..+...... .+++.. ++.+++.|+.+ ..+.+||+.+..|.
T Consensus 153 yv~GG~~~~~~~~~~~~~~~~yd~~~~-~W~~~~~~p~~r~~-~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~ 229 (306)
T 3ii7_A 153 YVCGGSLGNNVSGRVLNSCEVYDPATE-TWTELCPMIEARKN-HGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNEWK 229 (306)
T ss_dssp EEECCEESCTTTCEECCCEEEEETTTT-EEEEECCCSSCCBS-CEEEEE-TTEEEEECCEETTEEBCCEEEEETTTTEEE
T ss_pred EEECCCCCCCCcccccceEEEeCCCCC-eEEECCCccchhhc-ceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCcEE
Confidence 777764 345778887432 11122111111111 122222 56677777654 35889999999887
Q ss_pred EeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEe----cCCeEEEEECCCCc
Q psy9598 699 FIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAIN----FNFQIKIWDAFNGD 755 (1915)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~----~Dg~I~vwD~~tg~ 755 (1915)
.+.. .+. ......++.+ ++..++.|+. .-..|.+||+.+.+
T Consensus 230 ~~~~-----~p~---------~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~ 274 (306)
T 3ii7_A 230 MVSP-----MPW---------KGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDK 274 (306)
T ss_dssp ECCC-----CSC---------CBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred ECCC-----CCC---------CccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence 6421 110 1111222333 5666666663 12467888887654
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=95.80 E-value=2.2 Score=51.62 Aligned_cols=71 Identities=24% Similarity=0.269 Sum_probs=43.7
Q ss_pred CCeEEEEEcc------CCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEEe-CCCe
Q psy9598 765 NEVFVLESHP------FDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTD-SYGH 837 (1915)
Q Consensus 765 ~~V~sl~~sp------~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~-~dG~ 837 (1915)
..+..+.|.. ..+.++++.-..+.|...++..+.. ... ..++. .....+.++++.|||.++++.+ .+|.
T Consensus 271 ~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~--~~~-~~~~~-~~~~rp~~v~~~pdG~lyv~td~~~g~ 346 (353)
T 2g8s_A 271 PAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKV--TED-GRILT-DRGQRIRDVRTGPDGYLYVLTDESSGE 346 (353)
T ss_dssp CCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEE--EEE-EEESG-GGCCCEEEEEECTTSCEEEEECSTTEE
T ss_pred cCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeE--eee-EEccc-CCCCceeEEEECCCCcEEEEEeCCCCE
Confidence 3567777764 1366777666778888888775433 211 11221 2235789999999999777655 4554
Q ss_pred EE
Q psy9598 838 LL 839 (1915)
Q Consensus 838 I~ 839 (1915)
|+
T Consensus 347 I~ 348 (353)
T 2g8s_A 347 LL 348 (353)
T ss_dssp EE
T ss_pred EE
Confidence 43
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.78 E-value=0.34 Score=57.06 Aligned_cols=189 Identities=14% Similarity=0.180 Sum_probs=92.1
Q ss_pred CEEEEEECC----CcEEEEECCCCcEEEE--EeCCCCCEEEEEEeCCCCEEEEEeCC-----CcEEEEECCCCceEEE--
Q psy9598 489 EVIVTGADD----LLIKLWRARDGKLLAT--LRGCSGEISDIAIDNRNILLAAGTVD-----KTIRIWNLQTLAPISV-- 555 (1915)
Q Consensus 489 ~~LaTGs~D----g~I~IWd~~tg~~~~~--l~gH~~~I~~Lafspdg~~LaSgs~D-----gtIrVWDl~tg~~~~~-- 555 (1915)
.+++.|+.+ ..+.+||+.+..-... +......-..+. -++.+++.|+.+ ..+.+||+.+..-...
T Consensus 17 ~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~ 94 (302)
T 2xn4_A 17 LMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVY--MAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVAN 94 (302)
T ss_dssp EEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECC
T ss_pred EEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEE--ECCEEEEEeCcCCCccccceEEECCCCCceeeCCC
Confidence 344444432 3578888877653322 111111111222 266677777754 3588899877643222
Q ss_pred eecCCCCeEEEEeccCccCCCcEEEEEeCCC-----eEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCC
Q psy9598 556 LVGHQGIITGVNFCPLEVNGFNYLASTSTDG-----CIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGG 630 (1915)
Q Consensus 556 l~~h~~~V~sl~fsp~~~~d~~~L~sgs~Dg-----tI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg 630 (1915)
+........++.+ ++.+++.|+.++ .+.+||+.+....... ..+. + .....++.+ ++
T Consensus 95 ~p~~r~~~~~~~~------~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~--~~p~-------~-r~~~~~~~~--~~ 156 (302)
T 2xn4_A 95 MRDRRSTLGAAVL------NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVA--PMNT-------R-RSSVGVGVV--GG 156 (302)
T ss_dssp CSSCCBSCEEEEE------TTEEEEEEEECSSCEEEEEEEEETTTTEEEEEC--CCSS-------C-CBSCEEEEE--TT
T ss_pred CCccccceEEEEE------CCEEEEEcCCCCCccCceEEEEeCCCCeEeecC--CCCC-------c-ccCceEEEE--CC
Confidence 1111111122222 236777777553 4677787665321111 1010 0 111122222 56
Q ss_pred cEEEEEeCC-------CeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCC-----CcEEEEEccCCceE
Q psy9598 631 LFLATGSGD-------HHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRD-----GTALIWYYKCSQWR 698 (1915)
Q Consensus 631 ~~Lasgs~D-------g~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~D-----G~I~IWDl~~~~~~ 698 (1915)
.+++.|+.+ ..+.+||+... ....+..+........++.+ ++.+++.|+.+ ..+.+||+.+..|.
T Consensus 157 ~iyv~GG~~~~~~~~~~~~~~yd~~~~-~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~ 233 (302)
T 2xn4_A 157 LLYAVGGYDVASRQCLSTVECYNATTN-EWTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAWR 233 (302)
T ss_dssp EEEEECCEETTTTEECCCEEEEETTTT-EEEEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEEE
T ss_pred EEEEEeCCCCCCCccccEEEEEeCCCC-cEEECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCEe
Confidence 677777643 34778887422 11222111111111122222 56777777765 36889999999887
Q ss_pred Ee
Q psy9598 699 FI 700 (1915)
Q Consensus 699 ~~ 700 (1915)
.+
T Consensus 234 ~~ 235 (302)
T 2xn4_A 234 QV 235 (302)
T ss_dssp EE
T ss_pred eC
Confidence 64
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=95.70 E-value=0.42 Score=58.25 Aligned_cols=156 Identities=17% Similarity=0.098 Sum_probs=100.2
Q ss_pred cCCCCEEEEEECCCcEEEEECCCCcEEEEEeCC----CCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCc---------
Q psy9598 485 DKLGEVIVTGADDLLIKLWRARDGKLLATLRGC----SGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLA--------- 551 (1915)
Q Consensus 485 spdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH----~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~--------- 551 (1915)
..+|.-|+.+- ++.||.-++..+...+.+... -..|..+..||+|.+||..+ +..|.|-.+..+.
T Consensus 29 ~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~ 106 (452)
T 3pbp_A 29 SQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQ 106 (452)
T ss_dssp ETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHH
T ss_pred EcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccc
Confidence 34566666664 357777777644434444332 23688899999999999886 5689998886321
Q ss_pred ---eEEEeec------CCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceE
Q psy9598 552 ---PISVLVG------HQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHIL 622 (1915)
Q Consensus 552 ---~~~~l~~------h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~ 622 (1915)
....+.- ....|..+.|+|.+. .+..|++-..|++|++||+........ .+...... -........|.
T Consensus 107 ~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~-~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~-fg~d~~~~ev~ 183 (452)
T 3pbp_A 107 DAFQIFHYSIDEEEVGPKSSIKKVLFHPKSY-RDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNS-FGLDARVNDIT 183 (452)
T ss_dssp HTTEEEEEEGGGCC--CCCCEEEEEECTTBG-GGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSE-EESCSSCCCEE
T ss_pred cccceeEEEcCCcccCCCCceeEEEeccccC-CCCeEEEEecCCEEEEEEcccCCCCCc-chhccccc-cCCCcccceEE
Confidence 1123321 246799999999874 467899999999999999986332222 22111000 01122336788
Q ss_pred EEEECCCCcEEEEEe--CCCeEEEE
Q psy9598 623 CSSFSPGGLFLATGS--GDHHVRVY 645 (1915)
Q Consensus 623 ~l~fspdg~~Lasgs--~Dg~I~Iw 645 (1915)
+++|..+|-.|.+.+ ..|.|+-.
T Consensus 184 S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 184 DLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp EEEECTTSSCEEEEECTTSCEEEEE
T ss_pred EEEEcCCCcEEEEEecCCCCCEEEE
Confidence 999999887777755 66776544
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.68 E-value=0.23 Score=58.52 Aligned_cols=191 Identities=9% Similarity=0.021 Sum_probs=98.5
Q ss_pred CCCEEEEEECC-----CcEEEEECCCCc---EEE--EEeCCCCCEEEEEEeCCCCEEEEEeCC-----CcEEEEECCCCc
Q psy9598 487 LGEVIVTGADD-----LLIKLWRARDGK---LLA--TLRGCSGEISDIAIDNRNILLAAGTVD-----KTIRIWNLQTLA 551 (1915)
Q Consensus 487 dg~~LaTGs~D-----g~I~IWd~~tg~---~~~--~l~gH~~~I~~Lafspdg~~LaSgs~D-----gtIrVWDl~tg~ 551 (1915)
++.+++.|+.+ ..+.+||+.+.. ... .+......-.++.+ ++.+++.|+.+ ..+.+||+.+..
T Consensus 62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~ 139 (301)
T 2vpj_A 62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQ 139 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCe
Confidence 46777777755 468999988766 332 22211112222222 56777777654 358889987754
Q ss_pred eEE--EeecCCCCeEEEEeccCccCCCcEEEEEeCC-----CeEEEEecccCccccceeccCccccccccCCCCCceEEE
Q psy9598 552 PIS--VLVGHQGIITGVNFCPLEVNGFNYLASTSTD-----GCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCS 624 (1915)
Q Consensus 552 ~~~--~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~D-----gtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l 624 (1915)
-.. .+........++.+ ++.+++.|+.+ ..+.+||+.+..-.... ..+. ......++
T Consensus 140 W~~~~~~p~~r~~~~~~~~------~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~--~~p~--------~r~~~~~~ 203 (301)
T 2vpj_A 140 WSMLGDMQTAREGAGLVVA------SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVT--PMAT--------KRSGAGVA 203 (301)
T ss_dssp EEEEEECSSCCBSCEEEEE------TTEEEEECCBCSSCBCCCEEEEETTTTEEEEEC--CCSS--------CCBSCEEE
T ss_pred EEECCCCCCCcccceEEEE------CCEEEEECCCCCCcccceEEEEeCCCCcEEeCC--CCCc--------ccccceEE
Confidence 322 22211111122222 23677777654 35778887766321111 1000 01111222
Q ss_pred EECCCCcEEEEEeCC-----CeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCC-----CcEEEEEccC
Q psy9598 625 SFSPGGLFLATGSGD-----HHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRD-----GTALIWYYKC 694 (1915)
Q Consensus 625 ~fspdg~~Lasgs~D-----g~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~D-----G~I~IWDl~~ 694 (1915)
.+ ++.+++.|+.+ ..|.+||+... ....+..+........++.+ ++.+++.|+.+ ..|.+||+.+
T Consensus 204 ~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~-~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~ 278 (301)
T 2vpj_A 204 LL--NDHIYVVGGFDGTAHLSSVEAYNIRTD-SWTTVTSMTTPRCYVGATVL--RGRLYAIAGYDGNSLLSSIECYDPII 278 (301)
T ss_dssp EE--TTEEEEECCBCSSSBCCCEEEEETTTT-EEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBEEEEEEEETTT
T ss_pred EE--CCEEEEEeCCCCCcccceEEEEeCCCC-cEEECCCCCCcccceeEEEE--CCEEEEEcCcCCCcccccEEEEcCCC
Confidence 22 56777887764 46888888432 22222111111111222222 56677777765 3578889988
Q ss_pred CceEEe
Q psy9598 695 SQWRFI 700 (1915)
Q Consensus 695 ~~~~~~ 700 (1915)
.+|...
T Consensus 279 ~~W~~~ 284 (301)
T 2vpj_A 279 DSWEVV 284 (301)
T ss_dssp TEEEEE
T ss_pred CeEEEc
Confidence 887653
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=95.65 E-value=3.5 Score=49.54 Aligned_cols=261 Identities=11% Similarity=0.041 Sum_probs=125.8
Q ss_pred EeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCC---Cc
Q psy9598 555 VLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPG---GL 631 (1915)
Q Consensus 555 ~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspd---g~ 631 (1915)
++...-...+.|+|.|+ +.+|++--..|.|++++..++... .....+ .....+......|+|+|+ +.
T Consensus 26 ~va~gL~~P~~ia~~pd----G~llVter~~G~I~~v~~~~g~~~--~v~~~~----~v~~~g~~GllGia~~Pdf~~~g 95 (347)
T 3das_A 26 TVATGLNSPWGLAPLPG----GDLLVSSRDEATITRVDAKTGRKT--ELGEVP----GVSPSGEGGLLGIALSPDYASDH 95 (347)
T ss_dssp EEECCCSSEEEEEECTT----SCEEEEETTTCEEEEECTTTCCEE--EEEECT----TCCCBTTBSEEEEEECTTHHHHC
T ss_pred EeecCCCCceEEEEcCC----CcEEEEEecCCEEEEEECCCCcEe--eecccC----ceeecCCCCceeeEeccccccCC
Confidence 34444556789999994 466666555899999876544321 110001 111233467899999995 33
Q ss_pred EEEEE---eCCCeEEEEEecCCC-------CCceeE-Eec-cCCCCeeEEEEcCCCCEEEEEeCCCcEEE-EEc--cCCc
Q psy9598 632 FLATG---SGDHHVRVYKMDGVD-------SPLGIL-EVE-EHSDKVDSIQWSHSHLRFVSGSRDGTALI-WYY--KCSQ 696 (1915)
Q Consensus 632 ~Lasg---s~Dg~I~IwDl~~~~-------~~~~i~-~l~-~h~~~V~sl~fspdg~~L~sgs~DG~I~I-WDl--~~~~ 696 (1915)
.|.+. ..++.|.-|.+.... ....+. .+. +.......|+|.|+|.++++.+..+.... -|. ..+.
T Consensus 96 ~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~ 175 (347)
T 3das_A 96 MVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGK 175 (347)
T ss_dssp EEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTC
T ss_pred EEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCE
Confidence 34332 234456556654311 122222 122 12223567999999987776543221100 000 0011
Q ss_pred eEEeeecccccCCCC-c---cccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCC------------------
Q psy9598 697 WRFIRLDMNTCLPHT-K---ETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNG------------------ 754 (1915)
Q Consensus 697 ~~~~~~~~~~~~~~~-~---~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg------------------ 754 (1915)
...+ +.....+.. . ......++ .....++|+++|.+.++-...++.-.|--+..|
T Consensus 176 IlRi--~~dG~ip~~nPf~~~~i~a~G~-RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~ 252 (347)
T 3das_A 176 ILRM--TPDGEPAPGNPFPGSPVYSYGH-RNVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFH 252 (347)
T ss_dssp EEEE--CTTSSBCTTCSSTTCCEEEBCC-SBCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCC
T ss_pred EEEE--eCCCCccCCCCCCCCeEEeeCC-CCcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCcccc
Confidence 1111 111111000 0 00011122 234578999987766554332332222211111
Q ss_pred ceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEEe
Q psy9598 755 DLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTD 833 (1915)
Q Consensus 755 ~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~ 833 (1915)
.++..+..+......|+|.. +.+++..-..+.|....+..... ......++.+ ..+.+.+|+..|||.++++.+
T Consensus 253 ~P~~~~~~~~~ap~G~~~~~--g~~~~~~l~~~~l~~v~~~~~~~--~~~~e~~l~~-~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 253 DPVAQWSTDEASPSGIAYAE--GSVWMAGLRGERLWRIPLKGTAA--AADPQAFLEG-EYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp CCSEEECTTTCCEEEEEEET--TEEEEEESTTCSEEEEEEETTEE--SSCCEEESTT-TSSCEEEEEEEETTEEEEEEC
T ss_pred CCcEecCCCCCCCcceEEEc--CceeeccccCCEEEEEEecCCce--ecceEEeecC-CCCCccEEEECCCCcEEEEEc
Confidence 12333333323556777764 56666555556666666654432 1111122222 346899999999998777665
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.59 E-value=0.4 Score=56.51 Aligned_cols=191 Identities=8% Similarity=0.006 Sum_probs=99.2
Q ss_pred CCCEEEEEECC----CcEEEEECCCCcEEEE--EeCCCCCEEEEEEeCCCCEEEEEeCC------CcEEEEECCCCceEE
Q psy9598 487 LGEVIVTGADD----LLIKLWRARDGKLLAT--LRGCSGEISDIAIDNRNILLAAGTVD------KTIRIWNLQTLAPIS 554 (1915)
Q Consensus 487 dg~~LaTGs~D----g~I~IWd~~tg~~~~~--l~gH~~~I~~Lafspdg~~LaSgs~D------gtIrVWDl~tg~~~~ 554 (1915)
++.+++.|+.+ ..+.+||+.+..-... +........++. -++.+++.|+.+ ..+.+||+.+..-..
T Consensus 55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~ 132 (306)
T 3ii7_A 55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACA--AEGKIYTSGGSEVGNSALYLFECYDTRTESWHT 132 (306)
T ss_dssp TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEE--ETTEEEEECCBBTTBSCCCCEEEEETTTTEEEE
T ss_pred CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEE--ECCEEEEECCCCCCCcEeeeEEEEeCCCCceEe
Confidence 46677777754 5788999988754332 221111112222 266777777765 468899988765322
Q ss_pred E--eecCCCCeEEEEeccCccCCCcEEEEEeC---------CCeEEEEecccCccccceeccCccccccccCCCCCceEE
Q psy9598 555 V--LVGHQGIITGVNFCPLEVNGFNYLASTST---------DGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILC 623 (1915)
Q Consensus 555 ~--l~~h~~~V~sl~fsp~~~~d~~~L~sgs~---------DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~ 623 (1915)
. +........++.+ ++.+++.|+. -..+.+||+.+..-.... ..+. ......+
T Consensus 133 ~~~~p~~r~~~~~~~~------~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~--~~p~--------~r~~~~~ 196 (306)
T 3ii7_A 133 KPSMLTQRCSHGMVEA------NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELC--PMIE--------ARKNHGL 196 (306)
T ss_dssp ECCCSSCCBSCEEEEE------TTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEEC--CCSS--------CCBSCEE
T ss_pred CCCCcCCcceeEEEEE------CCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECC--Cccc--------hhhcceE
Confidence 2 1111111122222 2366666654 344778888766321111 1000 0111122
Q ss_pred EEECCCCcEEEEEeCC-----CeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCC-----CcEEEEEcc
Q psy9598 624 SSFSPGGLFLATGSGD-----HHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRD-----GTALIWYYK 693 (1915)
Q Consensus 624 l~fspdg~~Lasgs~D-----g~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~D-----G~I~IWDl~ 693 (1915)
+.+ ++.+++.|+.+ ..|.+||+... ....+..+........++.+ ++.+++.|+.+ ..+.+||+.
T Consensus 197 ~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~-~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~ 271 (306)
T 3ii7_A 197 VFV--KDKIFAVGGQNGLGGLDNVEYYDIKLN-EWKMVSPMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTE 271 (306)
T ss_dssp EEE--TTEEEEECCEETTEEBCCEEEEETTTT-EEEECCCCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETT
T ss_pred EEE--CCEEEEEeCCCCCCCCceEEEeeCCCC-cEEECCCCCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCC
Confidence 222 66777777654 35788887432 12222112111122223333 66778888754 468899999
Q ss_pred CCceEEe
Q psy9598 694 CSQWRFI 700 (1915)
Q Consensus 694 ~~~~~~~ 700 (1915)
+.+|...
T Consensus 272 ~~~W~~~ 278 (306)
T 3ii7_A 272 TDKWVAN 278 (306)
T ss_dssp TTEEEEE
T ss_pred CCeEEeC
Confidence 9988764
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=95.34 E-value=0.95 Score=54.67 Aligned_cols=193 Identities=10% Similarity=0.066 Sum_probs=108.0
Q ss_pred eEEEEECCCCcEEEEE------------eCCCeEEEEEecCCCCCceeEEecc-----CCCCeeEEEEcC--CCC--EEE
Q psy9598 621 ILCSSFSPGGLFLATG------------SGDHHVRVYKMDGVDSPLGILEVEE-----HSDKVDSIQWSH--SHL--RFV 679 (1915)
Q Consensus 621 V~~l~fspdg~~Lasg------------s~Dg~I~IwDl~~~~~~~~i~~l~~-----h~~~V~sl~fsp--dg~--~L~ 679 (1915)
.-.+.+.++|..++++ ..+|.|.++|............+.+ .......|.+.+ +|. +++
T Consensus 52 ~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~V 131 (355)
T 3sre_A 52 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV 131 (355)
T ss_dssp CCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred cceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEE
Confidence 3456677877554444 1689999999853221112222332 234667777765 353 444
Q ss_pred EEeC--CCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEe----------------
Q psy9598 680 SGSR--DGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAIN---------------- 741 (1915)
Q Consensus 680 sgs~--DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~---------------- 741 (1915)
+... +.+|.||++............ . ........+.+++.++|.+.++...
T Consensus 132 vnh~~~~s~ielf~~d~~~~~~~~~~~---~--------~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~ 200 (355)
T 3sre_A 132 VNHPGSSSTVEVFKFQEEEKSLLHLKT---I--------RHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGL 200 (355)
T ss_dssp EECSTTCCEEEEEEEETTTTEEEEEEE---E--------CCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTC
T ss_pred EECCCCCCeEEEEEEECCCCEEEEEec---c--------ccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccC
Confidence 4444 567888887654311111100 0 0112345788899999988776541
Q ss_pred cCCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEE-ecCceEEEEECCC-CccccceeeeeeecCCCCcceEE
Q psy9598 742 FNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSA-GHDGLIIIWDILS-SKQRGYKWFHNIVEGQGEGALFD 819 (1915)
Q Consensus 742 ~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSg-s~DG~I~IWdl~s-~~~~~~~~~~~~~~~~~~~~V~~ 819 (1915)
..|.|+.++. +++. .+...-...+.|+|+| +++.|+.+ +..+.|..|++.. +.......+. ..+..-.
T Consensus 201 ~~g~vyr~d~--~~~~-~~~~~l~~pNGia~sp-Dg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~------~~g~PDG 270 (355)
T 3sre_A 201 AWSFVTYYSP--NDVR-VVAEGFDFANGINISP-DGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS------FDTLVDN 270 (355)
T ss_dssp CCEEEEEECT--TCCE-EEEEEESSEEEEEECT-TSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE------CSSEEEE
T ss_pred CccEEEEEEC--CeEE-EeecCCcccCcceECC-CCCEEEEEeCCCCeEEEEEECCCCcEecCEEEe------CCCCCce
Confidence 1245666654 3332 2222234578999999 87766655 4578999999864 3221112221 1355677
Q ss_pred EEEcC-CCCEEEEEeC
Q psy9598 820 GKWSP-DGTTCALTDS 834 (1915)
Q Consensus 820 vafSp-dg~~Lasg~~ 834 (1915)
+++.+ +|++.+++..
T Consensus 271 i~vD~e~G~lwva~~~ 286 (355)
T 3sre_A 271 ISVDPVTGDLWVGCHP 286 (355)
T ss_dssp EEECTTTCCEEEEEES
T ss_pred EEEeCCCCcEEEEecC
Confidence 88888 5887776653
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.31 E-value=0.58 Score=54.97 Aligned_cols=191 Identities=14% Similarity=0.173 Sum_probs=97.3
Q ss_pred CCCEEEEEECC-----CcEEEEECCCCcEEEE--EeCCCCCEEEEEEeCCCCEEEEEeCCC-----cEEEEECCCCceEE
Q psy9598 487 LGEVIVTGADD-----LLIKLWRARDGKLLAT--LRGCSGEISDIAIDNRNILLAAGTVDK-----TIRIWNLQTLAPIS 554 (1915)
Q Consensus 487 dg~~LaTGs~D-----g~I~IWd~~tg~~~~~--l~gH~~~I~~Lafspdg~~LaSgs~Dg-----tIrVWDl~tg~~~~ 554 (1915)
++.+++.|+.+ ..+.+||..+..-... +......-.++. -++.+++.|+.++ .+.+||+.+..-..
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~ 138 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAV--LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFH 138 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEEEEECSSCEEEEEEEEETTTTEEEE
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEE--ECCEEEEEcCCCCCccCceEEEEeCCCCeEee
Confidence 57777777754 3588999887754332 211111112222 2567777777553 57788887654322
Q ss_pred E--eecCCCCeEEEEeccCccCCCcEEEEEeCC-------CeEEEEecccCccccceeccCccccccccCCCCCceEEEE
Q psy9598 555 V--LVGHQGIITGVNFCPLEVNGFNYLASTSTD-------GCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSS 625 (1915)
Q Consensus 555 ~--l~~h~~~V~sl~fsp~~~~d~~~L~sgs~D-------gtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~ 625 (1915)
. +........++.+ ++.+++.|+.+ ..+.+||+.+..-.... ..+. + .....++.
T Consensus 139 ~~~~p~~r~~~~~~~~------~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~--~~p~-------~-r~~~~~~~ 202 (302)
T 2xn4_A 139 VAPMNTRRSSVGVGVV------GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIA--EMST-------R-RSGAGVGV 202 (302)
T ss_dssp ECCCSSCCBSCEEEEE------TTEEEEECCEETTTTEECCCEEEEETTTTEEEEEC--CCSS-------C-CBSCEEEE
T ss_pred cCCCCCcccCceEEEE------CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECC--CCcc-------c-cccccEEE
Confidence 2 1111111122222 23666666643 34778888765421111 1010 0 11112222
Q ss_pred ECCCCcEEEEEeCCC-----eEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCC-----cEEEEEccCC
Q psy9598 626 FSPGGLFLATGSGDH-----HVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDG-----TALIWYYKCS 695 (1915)
Q Consensus 626 fspdg~~Lasgs~Dg-----~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG-----~I~IWDl~~~ 695 (1915)
+ ++.+++.|+.++ .+.+||+... ....+..+.........+. .++.+++.|+.++ .|.+||+.+.
T Consensus 203 ~--~~~iyv~GG~~~~~~~~~~~~yd~~~~-~W~~~~~~~~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 277 (302)
T 2xn4_A 203 L--NNLLYAVGGHDGPLVRKSVEVYDPTTN-AWRQVADMNMCRRNAGVCA--VNGLLYVVGGDDGSCNLASVEYYNPTTD 277 (302)
T ss_dssp E--TTEEEEECCBSSSSBCCCEEEEETTTT-EEEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred E--CCEEEEECCCCCCcccceEEEEeCCCC-CEeeCCCCCCccccCeEEE--ECCEEEEECCcCCCcccccEEEEcCCCC
Confidence 2 577788887643 6888887432 1222211111111111222 2667777877654 4899999999
Q ss_pred ceEEe
Q psy9598 696 QWRFI 700 (1915)
Q Consensus 696 ~~~~~ 700 (1915)
.|..+
T Consensus 278 ~W~~~ 282 (302)
T 2xn4_A 278 KWTVV 282 (302)
T ss_dssp EEEEC
T ss_pred eEEEC
Confidence 88763
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=95.18 E-value=0.82 Score=53.96 Aligned_cols=191 Identities=12% Similarity=0.079 Sum_probs=94.0
Q ss_pred CCCEEEEEEC----CCcEEEEECCCCcEEEE--EeCCCCCEEEEEEeCCCCEEEEEeC----C-----CcEEEEECCCCc
Q psy9598 487 LGEVIVTGAD----DLLIKLWRARDGKLLAT--LRGCSGEISDIAIDNRNILLAAGTV----D-----KTIRIWNLQTLA 551 (1915)
Q Consensus 487 dg~~LaTGs~----Dg~I~IWd~~tg~~~~~--l~gH~~~I~~Lafspdg~~LaSgs~----D-----gtIrVWDl~tg~ 551 (1915)
++.+++.|+. -..+.+||..+...... +......- +++. -++.+++.|+. + ..+.+||+.+..
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~ 101 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGL-AGCV-VGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQ 101 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEE-ETTEEEEECCEEEETTEEEECCCEEEEETTTTE
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccc-eEEE-ECCEEEEECCCcCCCCCCeecceEEEECCCCCe
Confidence 3555566653 23688888877654332 11111111 1222 25667777665 2 468889987754
Q ss_pred eEEE--eecCCCCeEEEEeccCccCCCcEEEEEeCC-----CeEEEEecccCccccceeccCccccccccCCCCCceEEE
Q psy9598 552 PISV--LVGHQGIITGVNFCPLEVNGFNYLASTSTD-----GCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCS 624 (1915)
Q Consensus 552 ~~~~--l~~h~~~V~sl~fsp~~~~d~~~L~sgs~D-----gtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l 624 (1915)
-... +........++.+ ++.+++.|+.+ ..+.+||+.+......... + .......++
T Consensus 102 W~~~~~~p~~r~~~~~~~~------~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~--p--------~~r~~~~~~ 165 (308)
T 1zgk_A 102 WSPCAPMSVPRNRIGVGVI------DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPM--L--------TRRIGVGVA 165 (308)
T ss_dssp EEECCCCSSCCBTCEEEEE------TTEEEEECCEETTEECCCEEEEETTTTEEEECCCC--S--------SCCBSCEEE
T ss_pred EeECCCCCcCccccEEEEE------CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCC--C--------ccccceEEE
Confidence 2221 1111111122222 23666776643 3577788776532111110 0 001111222
Q ss_pred EECCCCcEEEEEeCC-----CeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCC-----CcEEEEEccC
Q psy9598 625 SFSPGGLFLATGSGD-----HHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRD-----GTALIWYYKC 694 (1915)
Q Consensus 625 ~fspdg~~Lasgs~D-----g~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~D-----G~I~IWDl~~ 694 (1915)
.+ ++.+++.|+.+ ..+.+||+... ....+..+........++.+ ++.+++.|+.+ ..+.+||+.+
T Consensus 166 ~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~-~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~ 240 (308)
T 1zgk_A 166 VL--NRLLYAVGGFDGTNRLNSAECYYPERN-EWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVET 240 (308)
T ss_dssp EE--TTEEEEECCBCSSCBCCCEEEEETTTT-EEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTT
T ss_pred EE--CCEEEEEeCCCCCCcCceEEEEeCCCC-eEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCC
Confidence 23 66777777764 35788887432 11111111111111222222 56677777765 4589999999
Q ss_pred CceEEe
Q psy9598 695 SQWRFI 700 (1915)
Q Consensus 695 ~~~~~~ 700 (1915)
..|..+
T Consensus 241 ~~W~~~ 246 (308)
T 1zgk_A 241 ETWTFV 246 (308)
T ss_dssp TEEEEC
T ss_pred CcEEEC
Confidence 988764
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=95.10 E-value=0.5 Score=55.82 Aligned_cols=191 Identities=11% Similarity=0.053 Sum_probs=97.2
Q ss_pred CCCEEEEEEC----C-----CcEEEEECCCCcEEEE--EeCCCCCEEEEEEeCCCCEEEEEeCC-----CcEEEEECCCC
Q psy9598 487 LGEVIVTGAD----D-----LLIKLWRARDGKLLAT--LRGCSGEISDIAIDNRNILLAAGTVD-----KTIRIWNLQTL 550 (1915)
Q Consensus 487 dg~~LaTGs~----D-----g~I~IWd~~tg~~~~~--l~gH~~~I~~Lafspdg~~LaSgs~D-----gtIrVWDl~tg 550 (1915)
++.+++.|+. + ..+.+||+.+...... +........++.+ ++.+++.|+.+ ..+.+||+.+.
T Consensus 70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~ 147 (308)
T 1zgk_A 70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERD 147 (308)
T ss_dssp TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTT
T ss_pred CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCC
Confidence 5667777765 2 4688999887754332 1111111222222 66677777643 36888998775
Q ss_pred ceEEE--eecCCCCeEEEEeccCccCCCcEEEEEeCC-----CeEEEEecccCccccceeccCccccccccCCCCCceEE
Q psy9598 551 APISV--LVGHQGIITGVNFCPLEVNGFNYLASTSTD-----GCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILC 623 (1915)
Q Consensus 551 ~~~~~--l~~h~~~V~sl~fsp~~~~d~~~L~sgs~D-----gtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~ 623 (1915)
.-... +........++.+ ++.+++.|+.+ ..+.+||+.+..-...... + .......+
T Consensus 148 ~W~~~~~~p~~r~~~~~~~~------~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~--p--------~~r~~~~~ 211 (308)
T 1zgk_A 148 EWHLVAPMLTRRIGVGVAVL------NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAM--N--------TIRSGAGV 211 (308)
T ss_dssp EEEECCCCSSCCBSCEEEEE------TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCC--S--------SCCBSCEE
T ss_pred eEeECCCCCccccceEEEEE------CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCC--C--------CccccceE
Confidence 43221 1111111122222 23677777654 3578888776532111100 0 00111222
Q ss_pred EEECCCCcEEEEEeCC-----CeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCC-----CcEEEEEcc
Q psy9598 624 SSFSPGGLFLATGSGD-----HHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRD-----GTALIWYYK 693 (1915)
Q Consensus 624 l~fspdg~~Lasgs~D-----g~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~D-----G~I~IWDl~ 693 (1915)
+.+ ++.+++.|+.+ ..+.+||+... ....+..+........++. -++.+++.|+.+ ..|.+||+.
T Consensus 212 ~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~-~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~ 286 (308)
T 1zgk_A 212 CVL--HNCIYAAGGYDGQDQLNSVERYDVETE-TWTFVAPMKHRRSALGITV--HQGRIYVLGGYDGHTFLDSVECYDPD 286 (308)
T ss_dssp EEE--TTEEEEECCBCSSSBCCCEEEEETTTT-EEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCEEEEEETT
T ss_pred EEE--CCEEEEEeCCCCCCccceEEEEeCCCC-cEEECCCCCCCccceEEEE--ECCEEEEEcCcCCCcccceEEEEcCC
Confidence 333 67777888765 45888887432 1111111111111112222 256677777754 457899999
Q ss_pred CCceEEe
Q psy9598 694 CSQWRFI 700 (1915)
Q Consensus 694 ~~~~~~~ 700 (1915)
+.+|..+
T Consensus 287 ~~~W~~~ 293 (308)
T 1zgk_A 287 TDTWSEV 293 (308)
T ss_dssp TTEEEEE
T ss_pred CCEEeec
Confidence 9888764
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.75 E-value=1.5 Score=51.69 Aligned_cols=188 Identities=8% Similarity=-0.008 Sum_probs=93.9
Q ss_pred EEEEEECCCcEEEEECCCCcEEE-EEeCCCCCEEEEEEeCCCCEEEEEeC----C-------CcEEEEECCCCceEEEee
Q psy9598 490 VIVTGADDLLIKLWRARDGKLLA-TLRGCSGEISDIAIDNRNILLAAGTV----D-------KTIRIWNLQTLAPISVLV 557 (1915)
Q Consensus 490 ~LaTGs~Dg~I~IWd~~tg~~~~-~l~gH~~~I~~Lafspdg~~LaSgs~----D-------gtIrVWDl~tg~~~~~l~ 557 (1915)
+++.|+ ..+.+||..+++-.. .+........+.+...++.+++.|+. + ..+.+||+.+..-.. +.
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~-~~ 83 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLG-MP 83 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEE-CC
T ss_pred EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEE-CC
Confidence 344454 479999998887543 22222223333344457788888873 1 127788887754321 11
Q ss_pred cCCCCe--EEEEeccCccCCCcEEEEEeCC--------CeEEEEecccCccccceeccCccccccccCCCCCceEEEEEC
Q psy9598 558 GHQGII--TGVNFCPLEVNGFNYLASTSTD--------GCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFS 627 (1915)
Q Consensus 558 ~h~~~V--~sl~fsp~~~~d~~~L~sgs~D--------gtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs 627 (1915)
.-...- .+++.. ++.+++.|+.+ ..+.+||+.+..-.... ..+. + .....++.
T Consensus 84 ~~p~~r~~~~~~~~-----~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~--~~p~-------~-r~~~~~~~-- 146 (315)
T 4asc_A 84 PLPSPRCLFGLGEA-----LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESD--PLPY-------V-VYGHTVLS-- 146 (315)
T ss_dssp CBSSCEESCEEEEE-----TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECC--CCSS-------C-CBSCEEEE--
T ss_pred CCCcchhceeEEEE-----CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECC--CCCC-------c-ccceeEEE--
Confidence 111110 112221 23666777632 35778888765321111 1010 0 01111222
Q ss_pred CCCcEEEEEeC-C-----CeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCC-----cEEEEEccCCc
Q psy9598 628 PGGLFLATGSG-D-----HHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDG-----TALIWYYKCSQ 696 (1915)
Q Consensus 628 pdg~~Lasgs~-D-----g~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG-----~I~IWDl~~~~ 696 (1915)
.++.+++.|+. + ..+.+||+... ....+..+........++.+ ++.+++.|+.++ .+.+||+.+..
T Consensus 147 ~~~~iyv~GG~~~~~~~~~~~~~yd~~~~-~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 223 (315)
T 4asc_A 147 HMDLVYVIGGKGSDRKCLNKMCVYDPKKF-EWKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNK 223 (315)
T ss_dssp ETTEEEEECCBCTTSCBCCCEEEEETTTT-EEEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTE
T ss_pred ECCEEEEEeCCCCCCcccceEEEEeCCCC-eEEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCe
Confidence 35667777776 2 36888887432 11111111111111122222 667777777654 48889999998
Q ss_pred eEEe
Q psy9598 697 WRFI 700 (1915)
Q Consensus 697 ~~~~ 700 (1915)
|...
T Consensus 224 W~~~ 227 (315)
T 4asc_A 224 WAPF 227 (315)
T ss_dssp EEEE
T ss_pred EEEC
Confidence 8764
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=94.75 E-value=9.5 Score=47.94 Aligned_cols=273 Identities=11% Similarity=0.084 Sum_probs=150.5
Q ss_pred EEEEECCCcEEEEECCCCcEEEEEeCCC-------------------------CCE--EEEEEe---CCCCEEEEEe-CC
Q psy9598 491 IVTGADDLLIKLWRARDGKLLATLRGCS-------------------------GEI--SDIAID---NRNILLAAGT-VD 539 (1915)
Q Consensus 491 LaTGs~Dg~I~IWd~~tg~~~~~l~gH~-------------------------~~I--~~Lafs---pdg~~LaSgs-~D 539 (1915)
+.||+..|.|+|+-+.+++.+..+.-.+ +.. ..+++. .||++|+.-. .+
T Consensus 73 f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdkan 152 (638)
T 3sbq_A 73 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKAN 152 (638)
T ss_dssp EEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETTT
T ss_pred EeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCCC
Confidence 5688889999999999999888774211 111 123343 2688888876 45
Q ss_pred CcEEEEECCCCceEEEee-cCCCCeEEEEeccCccCCCcEEEEEeCC-------CeE---------EEE---ecccCccc
Q psy9598 540 KTIRIWNLQTLAPISVLV-GHQGIITGVNFCPLEVNGFNYLASTSTD-------GCI---------GFW---KYKLDIDI 599 (1915)
Q Consensus 540 gtIrVWDl~tg~~~~~l~-~h~~~V~sl~fsp~~~~d~~~L~sgs~D-------gtI---------~iW---Dl~~~~~~ 599 (1915)
..|-..++...++-..+. .....+.++.|-... +..|+++++.. |.. .+| |..+....
T Consensus 153 ~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p--~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~~tm~v~ 230 (638)
T 3sbq_A 153 SRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVP--HTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAIDAETMEMA 230 (638)
T ss_dssp TEEEEEETTTTEEEEEEECTTCSCEEEEEECCSS--BCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEETTTCSEE
T ss_pred cceEEEECCcEeeceeEeCCCCcCcccccccccC--CccEEEecceeeccCCCCCcccccCChhhceEEEEEcCCccEEE
Confidence 678888999888766654 345677788775211 33677777643 221 000 11111000
Q ss_pred cceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCC---------------eEEEEEecC--------C-CCCc-
Q psy9598 600 SKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDH---------------HVRVYKMDG--------V-DSPL- 654 (1915)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg---------------~I~IwDl~~--------~-~~~~- 654 (1915)
..+.. .+..-.+...++|.+.++.+.+. .|.++++.. . ....
T Consensus 231 ~Qv~v-------------~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g 297 (638)
T 3sbq_A 231 FQVIV-------------DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGD 297 (638)
T ss_dssp EEEEE-------------SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTT
T ss_pred EEEEc-------------CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECC
Confidence 00000 01222234455666666554321 355565520 0 0000
Q ss_pred -eeEEecc---------------CCCCeeEEEEcCCCCEEEEEe-CCCcEEEEEccCCceEEeeecccccCCCCcccccc
Q psy9598 655 -GILEVEE---------------HSDKVDSIQWSHSHLRFVSGS-RDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDE 717 (1915)
Q Consensus 655 -~i~~l~~---------------h~~~V~sl~fspdg~~L~sgs-~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~ 717 (1915)
.+..+.+ -......+.++|+|.++++++ .+.+|.++|+....-... ...+.........
T Consensus 298 ~gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~----~k~~~~~~~~~ae 373 (638)
T 3sbq_A 298 SKTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFA----GKLADPRDVIVGE 373 (638)
T ss_dssp CCCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHT----TCCSCGGGGEEEC
T ss_pred CCeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhh----ccccCcccceEee
Confidence 0111211 123345678899999887665 678999999874321000 0000000111112
Q ss_pred ccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCC----------ceEEEeeCCCCCeEEEE-----EccCCCCEEEE
Q psy9598 718 TNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNG----------DLVQVLKGHTNEVFVLE-----SHPFDSRVLLS 782 (1915)
Q Consensus 718 ~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg----------~~i~~l~gH~~~V~sl~-----~sp~dg~~LaS 782 (1915)
..........+|+++| ..+++...|..|..|++... ..+..+..|-.+-.-.+ -.+ +|++|++
T Consensus 374 ~e~GlGPlHt~Fd~~G-~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~-dGk~lv~ 451 (638)
T 3sbq_A 374 PELGLGPLHTTFDGRG-NAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEA-DGKWLVA 451 (638)
T ss_dssp CBCCSCEEEEEECSSS-EEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTC-CSCEEEE
T ss_pred ccCCCcccEEEECCCC-ceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCC-CccEEEE
Confidence 2245567789999999 77777767999999998643 45666666655333222 134 7888888
Q ss_pred Ee
Q psy9598 783 AG 784 (1915)
Q Consensus 783 gs 784 (1915)
..
T Consensus 452 ln 453 (638)
T 3sbq_A 452 LS 453 (638)
T ss_dssp EE
T ss_pred ec
Confidence 75
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=94.67 E-value=1.3 Score=61.60 Aligned_cols=273 Identities=11% Similarity=0.092 Sum_probs=148.8
Q ss_pred CCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCC
Q psy9598 497 DLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGF 576 (1915)
Q Consensus 497 Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~ 576 (1915)
...|.|.|+..+..+..-. -.--+.-.+|..+.||.-+ ..++.|+|+.+...+..+.-.. .|.-=.|...
T Consensus 47 ~~~vvIidl~~~~~~~rrp---i~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~e-~VvfWkWis~----- 116 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNPIRRP---ISADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISL----- 116 (1630)
T ss_pred CceEEEEECCCCCCccccc---ccchhhccCCCcceEEEec-CCeEEEeehHHhhhhcccccCC-CceEEEecCC-----
Confidence 3478889988765442211 0111233467666666554 6789999999877776665433 4555566542
Q ss_pred cEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEe-------CCCeEEEEEecC
Q psy9598 577 NYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGS-------GDHHVRVYKMDG 649 (1915)
Q Consensus 577 ~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs-------~Dg~I~IwDl~~ 649 (1915)
+.|+..+. ..|..|++.+... ....|..... + ....|..-..+++.++++..| ..|.+.+|.+..
T Consensus 117 ~~l~lVT~-~aVyHW~~~~~s~-P~k~fdR~~~----L--~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er 188 (1630)
T 1xi4_A 117 NTVALVTD-NAVYHWSMEGESQ-PVKMFDRHSS----L--AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR 188 (1630)
T ss_pred CeeEEEcC-CeEEEeccCCCCc-cHHHHhcchh----c--ccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccc
Confidence 45555543 5699999965321 1111221111 1 136788888888888877543 358889998843
Q ss_pred CCCCceeEEeccCCCCeeEEEEcCC---CCEEEEEe---CCCcEEEEEccCC-ceEEeeecccccCCCCccccccccccc
Q psy9598 650 VDSPLGILEVEEHSDKVDSIQWSHS---HLRFVSGS---RDGTALIWYYKCS-QWRFIRLDMNTCLPHTKETSDETNKKI 722 (1915)
Q Consensus 650 ~~~~~~i~~l~~h~~~V~sl~fspd---g~~L~sgs---~DG~I~IWDl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 722 (1915)
.. ...+.||.+....+.+..+ ...|+.+. ..|.++|-++... .-.. ..... .............
T Consensus 189 ~~----sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~---~f~kk--~~~~~~~~~~~~D 259 (1630)
T 1xi4_A 189 KV----SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQ---PFPKK--AVDVFFPPEAQND 259 (1630)
T ss_pred cc----chhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCC---CCccc--cccccCCcccccC
Confidence 21 2335666655544433211 11222222 1267888777543 1000 00000 0000000011122
Q ss_pred cEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCc
Q psy9598 723 KVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSK 798 (1915)
Q Consensus 723 ~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~ 798 (1915)
-..++..++....++..+. -|.|++||+.||.++..-+-....|+..+.+...+. ++.....|.|.--.+....
T Consensus 260 fpv~~~vs~k~g~iy~itk-~G~~~~~d~~t~~~i~~~ris~~~iF~~~~~~~~~g-~~~vnr~G~vl~v~v~~~~ 333 (1630)
T 1xi4_A 260 FPVAMQISEKHDVVFLITK-YGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAG-IIGVNRKGQVLSVCVEEEN 333 (1630)
T ss_pred cceEEEeccccCEEEEEec-CceEEEEecccchhhhhccccCCceEEeccCCCCCc-eEEEcCCceEEEEEEccch
Confidence 2345666777777776666 899999999999998877666666666665542233 3344456666555554433
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=94.54 E-value=1.6 Score=60.63 Aligned_cols=270 Identities=8% Similarity=0.047 Sum_probs=143.1
Q ss_pred CcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCC
Q psy9598 540 KTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNA 619 (1915)
Q Consensus 540 gtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (1915)
.+|.|.|+..+..+..-. -.--+.-.+|.. ..|+.-. ..++.|||+.+...+....+. .
T Consensus 48 ~~vvIidl~~~~~~~rrp---i~AdsAIMnP~~----~iiALra-g~~lQiFnl~~k~klks~~~~-------------e 106 (1630)
T 1xi4_A 48 AQVVIIDMNDPSNPIRRP---ISADSAIMNPAS----KVIALKA-GKTLQIFNIEMKSKMKAHTMT-------------D 106 (1630)
T ss_pred ceEEEEECCCCCCccccc---ccchhhccCCCc----ceEEEec-CCeEEEeehHHhhhhcccccC-------------C
Confidence 468888887755432111 111233455633 4454443 789999999988776666665 2
Q ss_pred ceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEecc--CCCCeeEEEEcCCCCEEEEEe-------CCCcEEEE
Q psy9598 620 HILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEE--HSDKVDSIQWSHSHLRFVSGS-------RDGTALIW 690 (1915)
Q Consensus 620 ~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~--h~~~V~sl~fspdg~~L~sgs-------~DG~I~IW 690 (1915)
.|.--.|-....+-+++ +..|..|++.+...+..++...+ ....|..-..+++..+++..| ..|.+.+|
T Consensus 107 ~VvfWkWis~~~l~lVT--~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLy 184 (1630)
T 1xi4_A 107 DVTFWKWISLNTVALVT--DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLY 184 (1630)
T ss_pred CceEEEecCCCeeEEEc--CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeee
Confidence 34444554443332222 34799999976555544443221 135566777788888776443 34778888
Q ss_pred EccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCC---ce------EEEee
Q psy9598 691 YYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNG---DL------VQVLK 761 (1915)
Q Consensus 691 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg---~~------i~~l~ 761 (1915)
....+....+.... .++... ..........+.|++.-. .. .+.++|.++... .. +..+.
T Consensus 185 S~er~~sQ~iegha-~~F~~~--~~~~~~~~~~l~~f~~~~--------~~-g~kLhi~Ei~~~~~~~~~f~kk~~~~~~ 252 (1630)
T 1xi4_A 185 SVDRKVSQPIEGHA-ASFAQF--KMEGNAEESTLFCFAVRG--------QA-GGKLHIIEVGTPPTGNQPFPKKAVDVFF 252 (1630)
T ss_pred ecccccchhhhHhH-hhhhee--ccCCCCCCceEEEEEEec--------CC-CceEEEEecCCCccCCCCCccccccccC
Confidence 77654321110000 000000 000001111222222211 01 357888887432 11 11111
Q ss_pred C---CCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEEeCCCeE
Q psy9598 762 G---HTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHL 838 (1915)
Q Consensus 762 g---H~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~dG~I 838 (1915)
. -..--.++.+++ ...++...+.-|.|.++|+.++.+ +..-. .....|+..+-+....=+++....|.|
T Consensus 253 ~~~~~~Dfpv~~~vs~-k~g~iy~itk~G~~~~~d~~t~~~--i~~~r-----is~~~iF~~~~~~~~~g~~~vnr~G~v 324 (1630)
T 1xi4_A 253 PPEAQNDFPVAMQISE-KHDVVFLITKYGYIHLYDLETGTC--IYMNR-----ISGETIFVTAPHEATAGIIGVNRKGQV 324 (1630)
T ss_pred CcccccCcceEEEecc-ccCEEEEEecCceEEEEecccchh--hhhcc-----ccCCceEEeccCCCCCceEEEcCCceE
Confidence 1 122334566777 667788888899999999999988 32211 223456655555443445555577888
Q ss_pred EEEeCCCCcccccC
Q psy9598 839 LVYGLGGFKRPQNI 852 (1915)
Q Consensus 839 ~Iwdl~s~~~~~~l 852 (1915)
.-..+.....+..+
T Consensus 325 l~v~v~~~~iv~yi 338 (1630)
T 1xi4_A 325 LSVCVEEENIIPYI 338 (1630)
T ss_pred EEEEEccchhhhhH
Confidence 88887766555444
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.43 E-value=0.3 Score=58.53 Aligned_cols=202 Identities=9% Similarity=-0.063 Sum_probs=105.3
Q ss_pred CCEEEEEECCCcEEEEECCCCcEEEEEeCC-CCCEEEEEE--eC-CCCEEEEE-eCCCcEEEEECCCCceEEEeec----
Q psy9598 488 GEVIVTGADDLLIKLWRARDGKLLATLRGC-SGEISDIAI--DN-RNILLAAG-TVDKTIRIWNLQTLAPISVLVG---- 558 (1915)
Q Consensus 488 g~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH-~~~I~~Laf--sp-dg~~LaSg-s~DgtIrVWDl~tg~~~~~l~~---- 558 (1915)
+.+++.|+.||.|.-+|..+|+.+.++... ..++..+.- .+ ++..++.. +.||.|..++..+|.....+..
T Consensus 10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv 89 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV 89 (339)
T ss_dssp EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce
Confidence 347899999999999999999999998754 122222110 01 22333333 5899999999988855544331
Q ss_pred CCCCeEEEEeccCc-----cCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEEC-----C
Q psy9598 559 HQGIITGVNFCPLE-----VNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFS-----P 628 (1915)
Q Consensus 559 h~~~V~sl~fsp~~-----~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs-----p 628 (1915)
...++.. .-.|.- ...+..+++|+.+|.+...|+.+|+.+..+....+...... ....|.... -
T Consensus 90 ~~SP~~~-~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~-----~~e~~~~~~d~~~d~ 163 (339)
T 2be1_A 90 STSPLHL-KTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGS-----QSVDCSPEEKIKLQE 163 (339)
T ss_dssp TTCSEEE-ECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC------------------------
T ss_pred ecccccc-CCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccc-----ccccccccccccccc
Confidence 1122221 111100 00346889999999999999999987766654422110000 001111110 1
Q ss_pred CCcEEEEEeCCCeEEEEEecCCCCCc-eeEEeccCCCC--e-eEEEEcCCCCEEEEEeCCCcEEEEEccCCce
Q psy9598 629 GGLFLATGSGDHHVRVYKMDGVDSPL-GILEVEEHSDK--V-DSIQWSHSHLRFVSGSRDGTALIWYYKCSQW 697 (1915)
Q Consensus 629 dg~~Lasgs~Dg~I~IwDl~~~~~~~-~i~~l~~h~~~--V-~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~ 697 (1915)
.+..|+.|..+..|.+.+- +..... .......+... + .+..++.++.+ +.++.||.|.-+|..++..
T Consensus 164 ~~~~v~ig~~~y~v~~~~~-sG~~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~ 234 (339)
T 2be1_A 164 CENMIVIGKTIFELGIHSY-DGASYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIA 234 (339)
T ss_dssp -CCEEEEEEEEEECEECCT-TSCCCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCE
T ss_pred CCCeEEEecceEEEEEECC-CCCeEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcE
Confidence 2345666666666655542 111000 01111111000 0 00001123555 5578899999988887763
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=94.34 E-value=1.6 Score=48.44 Aligned_cols=157 Identities=10% Similarity=-0.072 Sum_probs=83.4
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecC
Q psy9598 664 DKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFN 743 (1915)
Q Consensus 664 ~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~D 743 (1915)
..+..|+|+|+|.+.++ .+|.+.-.+..+....... .........+- ....++.|+++|.+.++ . |
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~--------~s~t~IG~~Gw-~~F~a~~fD~~G~LYav--~-d 106 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWM--------GRAKKIGNGGW-NQFQFLFFDPNGYLYAV--S-K 106 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHH--------HHCEEEECSCG-GGCSEEEECTTSCEEEE--E-T
T ss_pred ccceeEEECCCccEEEE--eCCeEEEECCCCCCccccc--------ccccEeccccc-ccceEEEECCCCCEEEe--C-C
Confidence 46789999999986666 6676544433221100000 00000000011 11478999999988777 4 8
Q ss_pred CeEEEEECCCCce-------EEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcc
Q psy9598 744 FQIKIWDAFNGDL-------VQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGA 816 (1915)
Q Consensus 744 g~I~vwD~~tg~~-------i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~ 816 (1915)
|.|+-++-.+... ...-.+--..+..|.|.| ++.+.+.. ||.++-+..-++....-......+-..+-..
T Consensus 107 G~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p-~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~ 183 (236)
T 1tl2_A 107 DKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHP-NGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDT 183 (236)
T ss_dssp TEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECT-TSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGG
T ss_pred CEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECC-CceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcce
Confidence 9998887643211 111122234689999999 88766665 8886544333222100000011111122234
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEE
Q psy9598 817 LFDGKWSPDGTTCALTDSYGHLL 839 (1915)
Q Consensus 817 V~~vafSpdg~~Lasg~~dG~I~ 839 (1915)
...+.|.++|.++++. +|.|+
T Consensus 184 yr~l~f~~~G~l~~v~--~g~~Y 204 (236)
T 1tl2_A 184 FKFLFFSSVGTLFGVQ--GGKFY 204 (236)
T ss_dssp EEEEEECTTSCEEEEE--TTEEE
T ss_pred EEEEEECCCCcEEEEe--CCeEE
Confidence 4456788888888777 66543
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.19 E-value=1.3 Score=52.44 Aligned_cols=195 Identities=9% Similarity=0.007 Sum_probs=96.6
Q ss_pred EEcCCCCEEEEEEC-----C------CcEEEEECCCCcEEEE--EeCCCCCEEEEEEeCCCCEEEEEeCC--------Cc
Q psy9598 483 LFDKLGEVIVTGAD-----D------LLIKLWRARDGKLLAT--LRGCSGEISDIAIDNRNILLAAGTVD--------KT 541 (1915)
Q Consensus 483 afspdg~~LaTGs~-----D------g~I~IWd~~tg~~~~~--l~gH~~~I~~Lafspdg~~LaSgs~D--------gt 541 (1915)
+...++.+++.|+. . ..+.+||+.+..-... +......- +++. -++.+++.|+.+ ..
T Consensus 41 ~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~~~~lyv~GG~~~~~~~~~~~~ 118 (315)
T 4asc_A 41 LVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLF-GLGE-ALNSIYVVGGREIKDGERCLDS 118 (315)
T ss_dssp EECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESC-EEEE-ETTEEEEECCEESSTTCCBCCC
T ss_pred EEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhce-eEEE-ECCEEEEEeCCcCCCCCcccce
Confidence 33457788888883 1 1277889887754321 11111111 1122 256677777632 45
Q ss_pred EEEEECCCCceEE--EeecCCCCeEEEEeccCccCCCcEEEEEeC-C-----CeEEEEecccCccccceeccCccccccc
Q psy9598 542 IRIWNLQTLAPIS--VLVGHQGIITGVNFCPLEVNGFNYLASTST-D-----GCIGFWKYKLDIDISKTVFHEPVMFNER 613 (1915)
Q Consensus 542 IrVWDl~tg~~~~--~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~-D-----gtI~iWDl~~~~~~~~~~~~~~~~~~~~ 613 (1915)
+.+||+.+..-.. .+........++.+ ++.+++.|+. + ..+.+||+.+..-.... ..+.
T Consensus 119 ~~~~d~~~~~W~~~~~~p~~r~~~~~~~~------~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~--~~p~----- 185 (315)
T 4asc_A 119 VMCYDRLSFKWGESDPLPYVVYGHTVLSH------MDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELA--PMQT----- 185 (315)
T ss_dssp EEEEETTTTEEEECCCCSSCCBSCEEEEE------TTEEEEECCBCTTSCBCCCEEEEETTTTEEEECC--CCSS-----
T ss_pred EEEECCCCCcEeECCCCCCcccceeEEEE------CCEEEEEeCCCCCCcccceEEEEeCCCCeEEECC--CCCC-----
Confidence 8899988754221 11111111122222 2367777775 2 36788888765321111 1000
Q ss_pred cCCCCCceEEEEECCCCcEEEEEeCCC-----eEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCC---
Q psy9598 614 IRPGNAHILCSSFSPGGLFLATGSGDH-----HVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDG--- 685 (1915)
Q Consensus 614 ~~~~~~~V~~l~fspdg~~Lasgs~Dg-----~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG--- 685 (1915)
......++.+ ++.+++.|+.++ .+.+||+... ....+..+........++.+ ++.+++.|+.++
T Consensus 186 ---~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~-~W~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~ 257 (315)
T 4asc_A 186 ---ARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDN-KWAPFEAFPQERSSLSLVSL--VGTLYAIGGFATLET 257 (315)
T ss_dssp ---CCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTT-EEEEECCCSSCCBSCEEEEE--TTEEEEEEEEEEEEC
T ss_pred ---chhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCC-eEEECCCCCCcccceeEEEE--CCEEEEECCccccCc
Confidence 0111122222 667788887654 4778887432 22222111111111122222 566777777642
Q ss_pred -----------cEEEEEccCCceEEe
Q psy9598 686 -----------TALIWYYKCSQWRFI 700 (1915)
Q Consensus 686 -----------~I~IWDl~~~~~~~~ 700 (1915)
.|.+||+.+.+|..+
T Consensus 258 ~~~~~~~~~~~~v~~yd~~~~~W~~~ 283 (315)
T 4asc_A 258 ESGELVPTELNDIWRYNEEEKKWEGV 283 (315)
T ss_dssp TTSCEEEEEEEEEEEEETTTTEEEEE
T ss_pred CCccccccccCcEEEecCCCChhhhh
Confidence 377889999888765
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=93.81 E-value=2.1 Score=52.22 Aligned_cols=159 Identities=12% Similarity=0.101 Sum_probs=95.3
Q ss_pred EeCCCCEEEEEeCCCcEEEEECCCCceEEEeecC----CCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccc
Q psy9598 526 IDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGH----QGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISK 601 (1915)
Q Consensus 526 fspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h----~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~ 601 (1915)
.+.+|+-|+.+- ++.||.-++......+.+... -..|..+..+|.+ .+|+..+. ..|.|..+..+.....
T Consensus 28 ~~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG----~lLAl~g~-~~V~Vv~LP~~~~~~~ 101 (452)
T 3pbp_A 28 SSQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSG----DLLCLFND-NEIFVMEVPWGYSNVE 101 (452)
T ss_dssp EETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTS----SEEEEECS-SEEEEEECCTTCSCCC
T ss_pred EEcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCC----CEEEEecC-CeEEEEEecCccccCc
Confidence 345566666554 467887777754444454432 2367889999954 77777654 5788888774321111
Q ss_pred e-e----cc-CccccccccCCCCCceEEEEECCC---CcEEEEEeCCCeEEEEEecCCC-CCc------eeEEeccCCCC
Q psy9598 602 T-V----FH-EPVMFNERIRPGNAHILCSSFSPG---GLFLATGSGDHHVRVYKMDGVD-SPL------GILEVEEHSDK 665 (1915)
Q Consensus 602 ~-~----~~-~~~~~~~~~~~~~~~V~~l~fspd---g~~Lasgs~Dg~I~IwDl~~~~-~~~------~i~~l~~h~~~ 665 (1915)
- . +. ...............|..+.|+|- |..|++-..|+.|++||+.... .+. ..+.+..+...
T Consensus 102 ~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~e 181 (452)
T 3pbp_A 102 DVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVND 181 (452)
T ss_dssp CHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCC
T ss_pred ccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccce
Confidence 0 0 00 000000001112478999999995 4589999999999999996421 122 11122233467
Q ss_pred eeEEEEcCCCCEEEEEe--CCCcEEEE
Q psy9598 666 VDSIQWSHSHLRFVSGS--RDGTALIW 690 (1915)
Q Consensus 666 V~sl~fspdg~~L~sgs--~DG~I~IW 690 (1915)
|.+++|..+|-.|+..+ ..|.|+-.
T Consensus 182 v~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 182 ITDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp EEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred EEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 89999999888777755 77776543
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=93.57 E-value=2.3 Score=50.33 Aligned_cols=107 Identities=14% Similarity=0.251 Sum_probs=57.4
Q ss_pred CCCEEEEEeCC-------CcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEec----
Q psy9598 674 SHLRFVSGSRD-------GTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINF---- 742 (1915)
Q Consensus 674 dg~~L~sgs~D-------G~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~---- 742 (1915)
++.+++.|+.+ ..+.+||+.+..|..... .+. ....| .++. .++..++.|+..
T Consensus 109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~-----~p~-----~r~~~----~~~~--~~~~iyv~GG~~~~~~ 172 (318)
T 2woz_A 109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKN-----LPI-----KVYGH----NVIS--HNGMIYCLGGKTDDKK 172 (318)
T ss_dssp TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECC-----CSS-----CEESC----EEEE--ETTEEEEECCEESSSC
T ss_pred CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCC-----CCC-----ccccc----EEEE--ECCEEEEEcCCCCCCC
Confidence 56677777754 347888999988876421 110 01111 1222 355555555531
Q ss_pred -CCeEEEEECCCCceEEE--eeCCCCCeEEEEEccCCCCEEEEEecC-----ceEEEEECCCCcc
Q psy9598 743 -NFQIKIWDAFNGDLVQV--LKGHTNEVFVLESHPFDSRVLLSAGHD-----GLIIIWDILSSKQ 799 (1915)
Q Consensus 743 -Dg~I~vwD~~tg~~i~~--l~gH~~~V~sl~~sp~dg~~LaSgs~D-----G~I~IWdl~s~~~ 799 (1915)
-..+.+||+.+..-... +........++ .. ++.+++.||.+ ..|.+||+.+..-
T Consensus 173 ~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~-~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W 234 (318)
T 2woz_A 173 CTNRVFIYNPKKGDWKDLAPMKTPRSMFGVA-IH--KGKIVIAGGVTEDGLSASVEAFDLKTNKW 234 (318)
T ss_dssp BCCCEEEEETTTTEEEEECCCSSCCBSCEEE-EE--TTEEEEEEEEETTEEEEEEEEEETTTCCE
T ss_pred ccceEEEEcCCCCEEEECCCCCCCcccceEE-EE--CCEEEEEcCcCCCCccceEEEEECCCCeE
Confidence 23589999887653332 11111111222 22 56788888754 3577888876543
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=92.86 E-value=25 Score=43.90 Aligned_cols=121 Identities=11% Similarity=0.081 Sum_probs=62.3
Q ss_pred CCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccc-cCCCCCceEEEEECCC----CcEEEE
Q psy9598 561 GIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNER-IRPGNAHILCSSFSPG----GLFLAT 635 (1915)
Q Consensus 561 ~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~-~~~~~~~V~~l~fspd----g~~Las 635 (1915)
...+.|+|.|++ ...|+++...|.|++++...... .......+..+... .......+..|+|+|+ +.+.++
T Consensus 14 ~~P~~~a~~pdG---~~rl~V~er~G~i~~~~~~g~~~-~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~ 89 (463)
T 2wg3_C 14 RQPVGALHSGDG---SQRLFILEKEGYVKILTPEGEIF-KEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVS 89 (463)
T ss_dssp SSEEEEECCSSS---SCCEEEEETTTEEEEECTTSCBC-SSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEE
T ss_pred CCceEEEECCCC---CeEEEEEeCCceEEEEeCCCCee-eeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEE
Confidence 456899999943 12456667789999997543211 11111111111110 0122456889999996 444443
Q ss_pred EeC--C----------CeEEEEEecCC--C-----CCceeEEec--cCCCCeeEEEEcCCCCEEEEEeCCC
Q psy9598 636 GSG--D----------HHVRVYKMDGV--D-----SPLGILEVE--EHSDKVDSIQWSHSHLRFVSGSRDG 685 (1915)
Q Consensus 636 gs~--D----------g~I~IwDl~~~--~-----~~~~i~~l~--~h~~~V~sl~fspdg~~L~sgs~DG 685 (1915)
-+. + ..|.-|.+... . ....+..+. ........|+|.|+|.++++.+..+
T Consensus 90 yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~ 160 (463)
T 2wg3_C 90 YTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGM 160 (463)
T ss_dssp EEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTT
T ss_pred EeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCC
Confidence 322 1 13444555321 1 122333332 2233468899999998777666544
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=92.66 E-value=1.8 Score=52.07 Aligned_cols=63 Identities=13% Similarity=0.072 Sum_probs=33.5
Q ss_pred CCCEEEEEECC-CcEEEEECCC--CcEE--EEEe-CCCCCEEEEEEeCCCCEEEEEeC-C---------CcEEEEECCCC
Q psy9598 487 LGEVIVTGADD-LLIKLWRARD--GKLL--ATLR-GCSGEISDIAIDNRNILLAAGTV-D---------KTIRIWNLQTL 550 (1915)
Q Consensus 487 dg~~LaTGs~D-g~I~IWd~~t--g~~~--~~l~-gH~~~I~~Lafspdg~~LaSgs~-D---------gtIrVWDl~tg 550 (1915)
++.+++.|+.+ ..+.+||+.+ .... ..+. .....-.++. -++.+++.|+. + ..+.+||+.+.
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~ 96 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAF--IDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN 96 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEE--ETTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEE--ECCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence 46666666543 4688888864 3222 1222 1111112222 25667777765 2 46888998875
Q ss_pred c
Q psy9598 551 A 551 (1915)
Q Consensus 551 ~ 551 (1915)
.
T Consensus 97 ~ 97 (357)
T 2uvk_A 97 S 97 (357)
T ss_dssp E
T ss_pred c
Confidence 4
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=92.35 E-value=2.7 Score=55.87 Aligned_cols=202 Identities=13% Similarity=0.043 Sum_probs=104.1
Q ss_pred CCCCEEEEEECC----CcEEEEECCCCcEEEEE-e-----CCCC-CEEEEEEeC-CCCEEEEEeCC------CcEEEEEC
Q psy9598 486 KLGEVIVTGADD----LLIKLWRARDGKLLATL-R-----GCSG-EISDIAIDN-RNILLAAGTVD------KTIRIWNL 547 (1915)
Q Consensus 486 pdg~~LaTGs~D----g~I~IWd~~tg~~~~~l-~-----gH~~-~I~~Lafsp-dg~~LaSgs~D------gtIrVWDl 547 (1915)
-++.+++.||.+ ..+.+||+.++.....- . .... .-.+++... ++.+++.||.+ ..+.+||+
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 456777777753 46889998887644332 1 0111 112333333 77788888754 35788888
Q ss_pred CCCceEE--EeecCCCCeEEEEeccCccCCCcEEEEEeCCC--eEEEEecccCccccceeccCccccccccCCCCCceEE
Q psy9598 548 QTLAPIS--VLVGHQGIITGVNFCPLEVNGFNYLASTSTDG--CIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILC 623 (1915)
Q Consensus 548 ~tg~~~~--~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~Dg--tI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~ 623 (1915)
.+..-.. .+......-.++.+. ++.+++.|+.++ .+.+||..+.......... ..... .....+
T Consensus 476 ~t~~W~~~~~~p~~R~~h~~~~~~-----~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g---~~p~~----r~~~~a 543 (695)
T 2zwa_A 476 KTREWSMIKSLSHTRFRHSACSLP-----DGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKD---EFFQN----SLVSAG 543 (695)
T ss_dssp TTTEEEECCCCSBCCBSCEEEECT-----TSCEEEECCBCSSCSEEEEETTTTEEEECCCSS---GGGGS----CCBSCE
T ss_pred CCCcEEECCCCCCCcccceEEEEc-----CCEEEEECCCCCCCCEEEEECCCCceEEccCCC---CCCCc----ccceeE
Confidence 7743221 111111111222222 347778887655 6888888776421111100 00000 111233
Q ss_pred EEECCC-CcEEEEEeC--C-----CeEEEEEecCCCC-----CceeEEeccCCCCeeEEEEcCCCCEEEEEeCC------
Q psy9598 624 SSFSPG-GLFLATGSG--D-----HHVRVYKMDGVDS-----PLGILEVEEHSDKVDSIQWSHSHLRFVSGSRD------ 684 (1915)
Q Consensus 624 l~fspd-g~~Lasgs~--D-----g~I~IwDl~~~~~-----~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~D------ 684 (1915)
+.+..+ +.+++.||. + ..+.+||+....- ...+.........-.+++...++.+++.|+.+
T Consensus 544 ~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~ 623 (695)
T 2zwa_A 544 LEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFD 623 (695)
T ss_dssp EEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCC
T ss_pred EEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCC
Confidence 444544 667777776 2 3588999854331 12222211111111223333336777777743
Q ss_pred --CcEEEEEccCCceEE
Q psy9598 685 --GTALIWYYKCSQWRF 699 (1915)
Q Consensus 685 --G~I~IWDl~~~~~~~ 699 (1915)
..|.+||+.+..|..
T Consensus 624 ~~~~v~~yd~~t~~W~~ 640 (695)
T 2zwa_A 624 RTNSIISLDPLSETLTS 640 (695)
T ss_dssp TTTSEEEEETTTTEEEE
T ss_pred CCCeEEEEECCCCeEEE
Confidence 458999999999873
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=92.17 E-value=3.6 Score=48.54 Aligned_cols=194 Identities=8% Similarity=-0.005 Sum_probs=94.8
Q ss_pred EcCCCCEEEEEEC----CC-------cEEEEECCCCcEEEE--EeCCCCCEEEEEEeCCCCEEEEEeCC-------CcEE
Q psy9598 484 FDKLGEVIVTGAD----DL-------LIKLWRARDGKLLAT--LRGCSGEISDIAIDNRNILLAAGTVD-------KTIR 543 (1915)
Q Consensus 484 fspdg~~LaTGs~----Dg-------~I~IWd~~tg~~~~~--l~gH~~~I~~Lafspdg~~LaSgs~D-------gtIr 543 (1915)
...++.+++.|+. ++ .+.+||..+..-... +.........+.+ ++.+++.|+.+ ..+.
T Consensus 53 ~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~ 130 (318)
T 2woz_A 53 VTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVL 130 (318)
T ss_dssp ECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEE
T ss_pred EEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEEE--CCEEEEEcCccCCCCcccceEE
Confidence 3456788888873 12 177888877654332 1111111112222 56677777754 2477
Q ss_pred EEECCCCceEEE--eecCCCCeEEEEeccCccCCCcEEEEEeC------CCeEEEEecccCccccceeccCccccccccC
Q psy9598 544 IWNLQTLAPISV--LVGHQGIITGVNFCPLEVNGFNYLASTST------DGCIGFWKYKLDIDISKTVFHEPVMFNERIR 615 (1915)
Q Consensus 544 VWDl~tg~~~~~--l~~h~~~V~sl~fsp~~~~d~~~L~sgs~------DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~ 615 (1915)
+||+.+..-... +........++. . ++.+++.|+. -..+.+||+.+..-.... ..+.
T Consensus 131 ~yd~~~~~W~~~~~~p~~r~~~~~~~-~-----~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~--~~p~------- 195 (318)
T 2woz_A 131 CYDPVAAKWSEVKNLPIKVYGHNVIS-H-----NGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLA--PMKT------- 195 (318)
T ss_dssp EEETTTTEEEEECCCSSCEESCEEEE-E-----TTEEEEECCEESSSCBCCCEEEEETTTTEEEEEC--CCSS-------
T ss_pred EEeCCCCCEeECCCCCCcccccEEEE-E-----CCEEEEEcCCCCCCCccceEEEEcCCCCEEEECC--CCCC-------
Confidence 888876543221 111001111222 1 3366666664 235888888766421111 1010
Q ss_pred CCCCceEEEEECCCCcEEEEEeCC-----CeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCC------
Q psy9598 616 PGNAHILCSSFSPGGLFLATGSGD-----HHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRD------ 684 (1915)
Q Consensus 616 ~~~~~V~~l~fspdg~~Lasgs~D-----g~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~D------ 684 (1915)
+ .....++.+ ++.+++.|+.+ ..+.+||+... ....+..+.........+. .++.+++.|+.+
T Consensus 196 ~-r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~-~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~ 269 (318)
T 2woz_A 196 P-RSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTN-KWEVMTEFPQERSSISLVS--LAGSLYAIGGFAMIQLES 269 (318)
T ss_dssp C-CBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTC-CEEECCCCSSCCBSCEEEE--ETTEEEEECCBCCBC---
T ss_pred C-cccceEEEE--CCEEEEEcCcCCCCccceEEEEECCCC-eEEECCCCCCcccceEEEE--ECCEEEEECCeeccCCCC
Confidence 0 111122222 56777777653 34667887432 2222222211111112222 256677777654
Q ss_pred --------CcEEEEEccCCceEEe
Q psy9598 685 --------GTALIWYYKCSQWRFI 700 (1915)
Q Consensus 685 --------G~I~IWDl~~~~~~~~ 700 (1915)
..+.+||+.+.+|..+
T Consensus 270 ~~~~~~~~~~v~~yd~~~~~W~~~ 293 (318)
T 2woz_A 270 KEFAPTEVNDIWKYEDDKKEWAGM 293 (318)
T ss_dssp -CCBCCBCCCEEEEETTTTEEEEE
T ss_pred ceeccceeeeEEEEeCCCCEehhh
Confidence 3578899999988765
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=92.02 E-value=0.69 Score=51.40 Aligned_cols=109 Identities=11% Similarity=-0.032 Sum_probs=67.5
Q ss_pred cEEEEEECCCCCEEEEEEecCCeEEEEECCCCce------EEEee--CCCCCeEEEEEccCCCCEEEEEecCceEEEEEC
Q psy9598 723 KVTMVAWDASDRWVITAINFNFQIKIWDAFNGDL------VQVLK--GHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDI 794 (1915)
Q Consensus 723 ~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~------i~~l~--gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl 794 (1915)
.+..++|+|+|.+.++ . +|.++-.+..++.. -..+- +-.. -.++.|.| ++.+.++ .||.|+-|+-
T Consensus 42 ~~~~laf~P~G~LYaV--~-~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~-~G~LYav--~dG~iyr~~p 114 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV--L-NDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDP-NGYLYAV--SKDKLYKASP 114 (236)
T ss_dssp TCSEEEECTTSCEEEE--E-TTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECT-TSCEEEE--ETTEEEEESC
T ss_pred cceeEEECCCccEEEE--e-CCeEEEECCCCCCcccccccccEeccccccc-ceEEEECC-CCCEEEe--CCCEEEEeCC
Confidence 5668999998886555 5 78888877655221 11110 1111 36788888 8887776 6799988876
Q ss_pred CCCccc-cceeeeeeecCCCCcceEEEEEcCCCCEEEEEeCCCeEEEE
Q psy9598 795 LSSKQR-GYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVY 841 (1915)
Q Consensus 795 ~s~~~~-~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~dG~I~Iw 841 (1915)
.+.... .+.. ...+-..+-..+..|.|.|+|.+.|+. +|.++-+
T Consensus 115 P~~~~~~Wl~~-a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~ 159 (236)
T 1tl2_A 115 PQSDTDNWIAR-ATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKA 159 (236)
T ss_dssp CCSTTCCHHHH-SEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEE
T ss_pred CcCCCCceecc-ccEeccCCCCceEEEEECCCceEEEEe--CCcEEec
Confidence 443221 0111 111222233578999999999999888 6776443
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=91.28 E-value=4.1 Score=48.90 Aligned_cols=52 Identities=15% Similarity=0.099 Sum_probs=27.5
Q ss_pred eEEEEECCCCc--eEEEeeCCCCCeEEEEEccCCCCEEEEEecCc------eEEEEECCCCcc
Q psy9598 745 QIKIWDAFNGD--LVQVLKGHTNEVFVLESHPFDSRVLLSAGHDG------LIIIWDILSSKQ 799 (1915)
Q Consensus 745 ~I~vwD~~tg~--~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG------~I~IWdl~s~~~ 799 (1915)
.+.+||+.+.+ .+..+........++.+ ++.+++.||.++ .|.++++.+++.
T Consensus 286 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~ 345 (357)
T 2uvk_A 286 STDIHLWHNGKWDKSGELSQGRAYGVSLPW---NNSLLIIGGETAGGKAVTDSVLITVKDNKV 345 (357)
T ss_dssp CCEEEECC---CEEEEECSSCCBSSEEEEE---TTEEEEEEEECGGGCEEEEEEEEEC-CCSC
T ss_pred eEEEEecCCCceeeCCCCCCCcccceeEEe---CCEEEEEeeeCCCCCEeeeEEEEEEcCcEe
Confidence 57789987654 33333322222222322 578888888653 355568877766
|
| >3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=90.88 E-value=34 Score=41.37 Aligned_cols=238 Identities=11% Similarity=-0.005 Sum_probs=104.6
Q ss_pred CEEEEEeCCCcEEEEECC-CCceEEEe--ecCCCCeEEEEeccCccCCCcEEEEEeCCC----eEEEEecccCcccccee
Q psy9598 531 ILLAAGTVDKTIRIWNLQ-TLAPISVL--VGHQGIITGVNFCPLEVNGFNYLASTSTDG----CIGFWKYKLDIDISKTV 603 (1915)
Q Consensus 531 ~~LaSgs~DgtIrVWDl~-tg~~~~~l--~~h~~~V~sl~fsp~~~~d~~~L~sgs~Dg----tI~iWDl~~~~~~~~~~ 603 (1915)
..|.+|+..| +.+++.. .+.....+ ......|.+|++.|.. ...|++++..| .|... ...+.......
T Consensus 23 g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~---~~~l~~g~~~g~~g~gl~~s-~D~G~tW~~~~ 97 (394)
T 3b7f_A 23 VMLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPRE---PERMLMAARTGHLGPTVFRS-DDGGGNWTEAT 97 (394)
T ss_dssp CEEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSS---TTCEEEEEEC--CCEEEEEE-SSTTSCCEECS
T ss_pred CEEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCC---CCeEEEEecCCCCCccEEEe-CCCCCCceECC
Confidence 3566677766 4444432 22222221 1224568999998832 24455555544 33332 12222111111
Q ss_pred ccCccccccccCC----CCCceEEEEECCC--CcEEEEEeCCCeEEEEEecCCCCCceeEEec----------------c
Q psy9598 604 FHEPVMFNERIRP----GNAHILCSSFSPG--GLFLATGSGDHHVRVYKMDGVDSPLGILEVE----------------E 661 (1915)
Q Consensus 604 ~~~~~~~~~~~~~----~~~~V~~l~fspd--g~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~----------------~ 661 (1915)
. +..+...... ....|.++++.|. ...|.+++..+.|...+- ...+...+..+. .
T Consensus 98 ~--~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~D-gG~tW~~~~~~~~~p~~~~~~~~~~~g~~ 174 (394)
T 3b7f_A 98 R--PPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRSTD-HGASWEPVAGFNDHPMRRAWTGGEQDGTP 174 (394)
T ss_dssp B--CCCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEESS-TTSBCEECHHHHTCTTHHHHHCCC----C
T ss_pred c--cccCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEcC-CCCCeEECcCccCCccccccccccccCCC
Confidence 0 0000000000 1235788999872 455666665555544321 222222221111 1
Q ss_pred CCCCeeEEEEcCC-CCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCC-CCEEEEE
Q psy9598 662 HSDKVDSIQWSHS-HLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDAS-DRWVITA 739 (1915)
Q Consensus 662 h~~~V~sl~fspd-g~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spd-g~~L~t~ 739 (1915)
....|.+|.++|. ...|+.+..++.|...+-....|.......... ............+.+|++++. ...|+++
T Consensus 175 ~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~DgG~tW~~~~~~~~~~----~~p~~~~~~g~~~~~i~~~~~~~~~l~vg 250 (394)
T 3b7f_A 175 DGPKMHSILVDPRDPKHLYIGMSSGGVFESTDAGTDWKPLNRGCAAN----FLPDPNVEFGHDPHCVVQHPAAPDILYQQ 250 (394)
T ss_dssp CCCEEEEEEECTTCTTCEEEEEETBEEEEESSTTSSCEECCTTCCCT----TSSSSSSSSCBCEEEEEECSSSTTEEEEE
T ss_pred CCCceeEEEECCCCCCEEEEEECCCCEEEECCCCCCceECCCCcccc----ccCCCccccCcceeEEEECCCCCCEEEEE
Confidence 1235789999874 345555555554444332233343321100000 000000001235888999986 3566665
Q ss_pred EecCCeEEEEECCCCceEEEeeC--CC---CCeEEEEEccCCCCEEEEE
Q psy9598 740 INFNFQIKIWDAFNGDLVQVLKG--HT---NEVFVLESHPFDSRVLLSA 783 (1915)
Q Consensus 740 s~~Dg~I~vwD~~tg~~i~~l~g--H~---~~V~sl~~sp~dg~~LaSg 783 (1915)
.. +.|...+- .+.....+.. .. ..+.+|+++|.+...|..+
T Consensus 251 ~~--~gl~~s~D-~G~tW~~~~~~l~~~~~~~~~~i~~~p~~~~~l~~~ 296 (394)
T 3b7f_A 251 NH--CGIYRMDR-REGVWKRIGDAMPREVGDIGFPIVVHQRDPRTVWVF 296 (394)
T ss_dssp ET--TEEEEEET-TTTEEECGGGGSCTTTCSCEEEEEECSSCTTCEEEE
T ss_pred cC--CeEEEeCC-CCCcceECCCCCCCCCccceEEEEECCCCCCEEEEE
Confidence 53 44555442 2333333221 11 3467888887444444444
|
| >3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.62 E-value=37 Score=41.24 Aligned_cols=254 Identities=14% Similarity=0.099 Sum_probs=125.3
Q ss_pred cEEEEEeCCCeEEEEecccCccccceec---cCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCC--
Q psy9598 577 NYLASTSTDGCIGFWKYKLDIDISKTVF---HEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVD-- 651 (1915)
Q Consensus 577 ~~L~sgs~DgtI~iWDl~~~~~~~~~~~---~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~-- 651 (1915)
...+.-..||.|..|-......+..-.. ..|.. ... .....+..++++....+.++-..+|.|..|-.....
T Consensus 63 ~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~-v~~--~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqL 139 (389)
T 3kci_A 63 QTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTL-LES--IQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKL 139 (389)
T ss_dssp TEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEE-CGG--GTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTT
T ss_pred CeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEE-ccc--ccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcC
Confidence 4566667889999996544322111000 00100 000 112345566777777788888889999999653111
Q ss_pred -----CCc-eeEEeccC-CCCeeEEEEcCCCCEEEEEeCCCcEEEEEccC-CceEEeeecccccCCCCcccccccccccc
Q psy9598 652 -----SPL-GILEVEEH-SDKVDSIQWSHSHLRFVSGSRDGTALIWYYKC-SQWRFIRLDMNTCLPHTKETSDETNKKIK 723 (1915)
Q Consensus 652 -----~~~-~i~~l~~h-~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 723 (1915)
... ....+... ...|..|+.. ..+.++-..+|.|..|-... +++- .........+..........
T Consensus 140 G~g~~~~~~~p~~v~~l~~~~i~~va~G--~~hs~alt~~G~v~~wG~n~~GqLG-----~~~~~~~~~p~~v~~~~~~~ 212 (389)
T 3kci_A 140 GHGNRSPCDRPRVIESLRGIEVVDVAAG--GAHSACVTAAGDLYTWGKGRYGRLG-----HSDSEDQLKPKLVEALQGHR 212 (389)
T ss_dssp CSSSCCCEEEEEECGGGTTSCEEEEEEC--SSEEEEEETTSCEEEEECCGGGTTC-----SSSCCCEEEEEECGGGTTSC
T ss_pred CCCCCccCcCCeEecccCCCeEEEEEeC--cCeEEEEeCCCeEEEeCCCCCCCcC-----CCCCcccccceEecccCCCe
Confidence 000 01111111 1246666543 44666667899999995432 1100 00000000000001112335
Q ss_pred EEEEEECCCCCEEEEEEecCCeEEEEECCC-Cc---------eE-EEeeC-CCCCeEEEEEccCCCCEEEEEecCceEEE
Q psy9598 724 VTMVAWDASDRWVITAINFNFQIKIWDAFN-GD---------LV-QVLKG-HTNEVFVLESHPFDSRVLLSAGHDGLIII 791 (1915)
Q Consensus 724 V~~va~spdg~~L~t~s~~Dg~I~vwD~~t-g~---------~i-~~l~g-H~~~V~sl~~sp~dg~~LaSgs~DG~I~I 791 (1915)
|..++......+.++-.. +|.|+.|-... ++ .. ..+.. ....|..|+... .+.+.-..||.|+.
T Consensus 213 v~~ia~G~g~~~t~~l~~-~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~---~hs~alt~~G~v~~ 288 (389)
T 3kci_A 213 VVDIACGSGDAQTLCLTD-DDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGS---QFSVALTKSGAVYT 288 (389)
T ss_dssp EEEEEECCSSCEEEEEET-TTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEET---TEEEEEETTSCEEE
T ss_pred EEEEEEcCCCcEEEEEcc-CCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCCC---CEEEEEeCCCeEEE
Confidence 666666543345555555 89999997542 11 11 11111 122466666543 45555678999999
Q ss_pred EECCCCcccc-----ceeeeeeecCCCCcceEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q psy9598 792 WDILSSKQRG-----YKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGGF 846 (1915)
Q Consensus 792 Wdl~s~~~~~-----~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl~s~ 846 (1915)
|-....-..+ .......+.......|..++. -..+.++.+.+|.|+.|.....
T Consensus 289 wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~--G~~h~~al~~~G~v~~wG~n~~ 346 (389)
T 3kci_A 289 WGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIAT--GSLHCVCCTEDGEVYTWGDNDE 346 (389)
T ss_dssp EECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEE--CSSEEEEEETTCCEEEEECCTT
T ss_pred EeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEe--ccCeEEEECCCCCEEEeeCCCC
Confidence 9764321100 111111122112234555544 3455666788999999998754
|
| >2jns_A Bromodomain-containing protein 4; ET-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=89.51 E-value=0.3 Score=46.45 Aligned_cols=39 Identities=13% Similarity=0.148 Sum_probs=35.6
Q ss_pred CCCCCCCCCCHHHHHhhhHHHHhhcccccHHHHHHHHHHhccC
Q psy9598 278 DFNPAGETKTKAEKFLMSAMETERLTRLDQELMLLIIKYLEKG 320 (1915)
Q Consensus 278 ~~~~~~~~~t~~ek~~ls~~~~~~i~~l~~e~~~li~~~L~~~ 320 (1915)
...+..+.||++||+.|+. .|..||++.+..|++||+..
T Consensus 10 ~~e~~~~~mT~eEK~~Ls~----~I~~Lp~e~L~~Vi~II~~~ 48 (90)
T 2jns_A 10 EEEDKCKPMSYEEKRQLSL----DINKLPGEKLGRVVHIIQSR 48 (90)
T ss_dssp TTTSSCCCCCHHHHHHHHH----HHTTSCHHHHTTHHHHHHTT
T ss_pred CCCCCCCCCCHHHHHHHHH----HHHHcCHHHHHHHHHHHHhc
Confidence 3446789999999999999 99999999999999999987
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.25 E-value=9.8 Score=45.42 Aligned_cols=109 Identities=13% Similarity=0.050 Sum_probs=63.2
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEeecC-CCCeEEEEeccCccCCCcEEEEE-eCCCeEEEEecccCccccceeccCcc
Q psy9598 531 ILLAAGTVDKTIRIWNLQTLAPISVLVGH-QGIITGVNFCPLEVNGFNYLAST-STDGCIGFWKYKLDIDISKTVFHEPV 608 (1915)
Q Consensus 531 ~~LaSgs~DgtIrVWDl~tg~~~~~l~~h-~~~V~sl~fsp~~~~d~~~L~sg-s~DgtI~iWDl~~~~~~~~~~~~~~~ 608 (1915)
.+++.++.||.|.-+|..+|+.+..+... ..++....- +....++..++.. +.||.|..++..++............
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~-~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv 89 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQE-PSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV 89 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCC-SCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecC-CccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce
Confidence 37888999999999999999999988754 122222111 1111122344443 68999999998877433222211000
Q ss_pred ccccccCCCCCceEE---EEE-----CCCCcEEEEEeCCCeEEEEEec
Q psy9598 609 MFNERIRPGNAHILC---SSF-----SPGGLFLATGSGDHHVRVYKMD 648 (1915)
Q Consensus 609 ~~~~~~~~~~~~V~~---l~f-----spdg~~Lasgs~Dg~I~IwDl~ 648 (1915)
...++.. ..+ +..+..+++|+.+|.+...|+.
T Consensus 90 --------~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~ 129 (339)
T 2be1_A 90 --------STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINML 129 (339)
T ss_dssp --------TTCSEEEECC----------CCEEEEECEEEEEEEEEETT
T ss_pred --------eccccccCCCceeecccccccCCEEEEEecCCEEEEEECC
Confidence 0111111 000 0134578899999999988884
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=88.47 E-value=15 Score=46.13 Aligned_cols=72 Identities=10% Similarity=0.039 Sum_probs=52.9
Q ss_pred cEEEEEECCCCCEEEEEEecCCeEEEEECCC------Cce-------EEEeeCCCCCeEEEEEccCCCCEEEEEecCceE
Q psy9598 723 KVTMVAWDASDRWVITAINFNFQIKIWDAFN------GDL-------VQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLI 789 (1915)
Q Consensus 723 ~V~~va~spdg~~L~t~s~~Dg~I~vwD~~t------g~~-------i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I 789 (1915)
....+.++|||+++++++-.+.++.|+|+.. +++ +..... .-.....+|.+ +|....|.--|..|
T Consensus 324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~-GlGPlHt~Fd~-~G~aYTtlfidSqv 401 (638)
T 3sbq_A 324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPEL-GLGPLHTTFDG-RGNAYTTLFIDSQV 401 (638)
T ss_dssp SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBC-CSCEEEEEECS-SSEEEEEETTTTEE
T ss_pred CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccC-CCcccEEEECC-CCceEeeeeecceE
Confidence 3456889999999999998899999999873 111 222322 23456788998 78666666689999
Q ss_pred EEEECCC
Q psy9598 790 IIWDILS 796 (1915)
Q Consensus 790 ~IWdl~s 796 (1915)
..|++..
T Consensus 402 vkWni~~ 408 (638)
T 3sbq_A 402 VKWNMEE 408 (638)
T ss_dssp EEEEHHH
T ss_pred EEEeccH
Confidence 9999965
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=88.21 E-value=8.6 Score=50.94 Aligned_cols=153 Identities=14% Similarity=0.144 Sum_probs=82.1
Q ss_pred CCCcEEEEEeCC----CeEEEEEecCCCCCceeE-E-----eccCCCCeeEEEEcC-CCCEEEEEeCCC------cEEEE
Q psy9598 628 PGGLFLATGSGD----HHVRVYKMDGVDSPLGIL-E-----VEEHSDKVDSIQWSH-SHLRFVSGSRDG------TALIW 690 (1915)
Q Consensus 628 pdg~~Lasgs~D----g~I~IwDl~~~~~~~~i~-~-----l~~h~~~V~sl~fsp-dg~~L~sgs~DG------~I~IW 690 (1915)
.++.+++.||.+ ..+.+||... .....+. . +..... -.+++... ++..++.|+.++ .+.+|
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~-~~W~~~~~~~p~~~~p~~R~-~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~y 473 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHY-DKIDMKNIEVSSSEVPVARM-CHTFTTISRNNQLLLIGGRKAPHQGLSDNWIF 473 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECS-SCEEEEECCCCCSCCCCCCB-SCEEEEETTTTEEEEECCBSSTTCBCCCCEEE
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCC-CeEEEeccCCCCCCCCcccc-ceEEEEEccCCEEEEEcCCCCCCCccccEEEE
Confidence 456677777753 3578888843 2222222 1 111111 12333333 677777777543 47889
Q ss_pred EccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCC--eEEEEECCCCceEEEee-----CC
Q psy9598 691 YYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNF--QIKIWDAFNGDLVQVLK-----GH 763 (1915)
Q Consensus 691 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg--~I~vwD~~tg~~i~~l~-----gH 763 (1915)
|+.+..|..... .+ . .... .+++.-.++..++.|+. ++ .+.+||..+..-...-. ..
T Consensus 474 d~~t~~W~~~~~-----~p-----~----~R~~-h~~~~~~~~~iyv~GG~-~~~~~v~~yd~~t~~W~~~~~~g~~p~~ 537 (695)
T 2zwa_A 474 DMKTREWSMIKS-----LS-----H----TRFR-HSACSLPDGNVLILGGV-TEGPAMLLYNVTEEIFKDVTPKDEFFQN 537 (695)
T ss_dssp ETTTTEEEECCC-----CS-----B----CCBS-CEEEECTTSCEEEECCB-CSSCSEEEEETTTTEEEECCCSSGGGGS
T ss_pred eCCCCcEEECCC-----CC-----C----Cccc-ceEEEEcCCEEEEECCC-CCCCCEEEEECCCCceEEccCCCCCCCc
Confidence 999988876421 00 0 0111 12223236777777765 33 69999998765433211 11
Q ss_pred CCCeEEEEEccCCCCEEEEEec--C-----ceEEEEECCCCc
Q psy9598 764 TNEVFVLESHPFDSRVLLSAGH--D-----GLIIIWDILSSK 798 (1915)
Q Consensus 764 ~~~V~sl~~sp~dg~~LaSgs~--D-----G~I~IWdl~s~~ 798 (1915)
.....++.+...++.+++.||. + ..|.+||+.+..
T Consensus 538 r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~ 579 (695)
T 2zwa_A 538 SLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAEN 579 (695)
T ss_dssp CCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred ccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCc
Confidence 1122334455423678888876 2 358889988766
|
| >3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A* | Back alignment and structure |
|---|
Probab=86.24 E-value=66 Score=38.83 Aligned_cols=172 Identities=9% Similarity=0.075 Sum_probs=101.2
Q ss_pred CCCcEEEEEEcCCCCEEEE--EEC-------------CCcEEEEECCCC--cEEEEEeCC------CCCEEEEEEe---C
Q psy9598 475 HLSAVFCVLFDKLGEVIVT--GAD-------------DLLIKLWRARDG--KLLATLRGC------SGEISDIAID---N 528 (1915)
Q Consensus 475 H~~~V~~vafspdg~~LaT--Gs~-------------Dg~I~IWd~~tg--~~~~~l~gH------~~~I~~Lafs---p 528 (1915)
+--+|..+..+++|++-+. |.- --.|.+||+.++ ++++++.-. .+.+..|++. +
T Consensus 85 ~lvsV~~v~iD~~~rLWVLDtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~ 164 (381)
T 3q6k_A 85 ELTSIYQPVIDDCRRLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANP 164 (381)
T ss_dssp SSSCEEEEEECTTCEEEEEECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCT
T ss_pred ceEEeeEEEEcCCCcEEEEeCCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccC
Confidence 4567888888877765442 211 125889999999 999887532 3458888888 2
Q ss_pred C----CCEEEEE-eCCCcEEEEECCCCceEEEeec--------------C----CCCeEEEEeccCccCCCcEEEEEeCC
Q psy9598 529 R----NILLAAG-TVDKTIRIWNLQTLAPISVLVG--------------H----QGIITGVNFCPLEVNGFNYLASTSTD 585 (1915)
Q Consensus 529 d----g~~LaSg-s~DgtIrVWDl~tg~~~~~l~~--------------h----~~~V~sl~fsp~~~~d~~~L~sgs~D 585 (1915)
. +.++..+ +..+-|.|+|+.+++....+.. . ...|..|+.+|...++++.|+.+...
T Consensus 165 ~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~pls 244 (381)
T 3q6k_A 165 KGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGS 244 (381)
T ss_dssp TTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESS
T ss_pred CCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECC
Confidence 2 3344443 3467899999998876655521 0 13678888888643335666666655
Q ss_pred CeEEEEecccCccccceeccCccccccccCCCCCceEEEEEC-CCCcEEEEEeCCCeEEEEEecC
Q psy9598 586 GCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFS-PGGLFLATGSGDHHVRVYKMDG 649 (1915)
Q Consensus 586 gtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs-pdg~~Lasgs~Dg~I~IwDl~~ 649 (1915)
+ -++|.+.+...... ........... .+.......+++. .+|.++++--....|..|+..+
T Consensus 245 s-~~ly~V~T~~L~~~-~~~~~v~~~G~-kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 245 A-IKVYSVNTKELKQK-GGKLNPELLGN-RGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp C-SEEEEEEHHHHSST-TCCCCCEEEEE-CCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTS
T ss_pred C-CcEEEEEHHHhhCc-chhhceEEeee-cCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCC
Confidence 4 24444433211000 00111111111 1112344556775 6787777777888999999843
|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B | Back alignment and structure |
|---|
Probab=85.68 E-value=37 Score=39.22 Aligned_cols=225 Identities=13% Similarity=0.069 Sum_probs=114.4
Q ss_pred CEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccc
Q psy9598 520 EISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDI 599 (1915)
Q Consensus 520 ~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~ 599 (1915)
.|..|+.... +.+.-. ||.|..|-......+..-......|..|+... ...++. . ||.|..|-......+
T Consensus 25 ~i~~ia~G~~--h~~~l~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~-----~hs~~l-~-~G~v~~wG~n~~Gql 94 (282)
T 3qhy_B 25 GVDAIAGGYF--HGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGN-----YHSLAL-K-DGEVIAWGGNEDGQT 94 (282)
T ss_dssp SCCEEEECSS--EEEEEE-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECS-----SEEEEE-E-TTEEEEEECCTTSTT
T ss_pred CCcEEEeCCC--eEEEEE-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCC-----CEEEEE-E-CCEEEEeeCCCCCCC
Confidence 5667766543 222235 89999997654222211111223566776654 244454 4 899999976543322
Q ss_pred cceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEE
Q psy9598 600 SKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFV 679 (1915)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~ 679 (1915)
.. |... ...|..++.... +.++-. +|.|..|-....... .+ .......|..|+..... .+
T Consensus 95 g~-----P~~~-------~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gql-g~--~~~~~~~i~~i~~G~~~--~~ 154 (282)
T 3qhy_B 95 TV-----PAEA-------RSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQT-TV--PAEAQSGVTALDGGVYT--AL 154 (282)
T ss_dssp CC-----CGGG-------SSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTT-SC--CGGGGSSEEEEEECSSE--EE
T ss_pred CC-----Cccc-------CCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcC-CC--CccCCCCeEEEEcccCE--EE
Confidence 11 1111 135666665544 333344 899999976332211 11 11123457777654433 22
Q ss_pred EEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEE
Q psy9598 680 SGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQV 759 (1915)
Q Consensus 680 sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~ 759 (1915)
.-. ||.|..|-...... +.. .......|..|+.......+ - . +|.|+.|-....-.+..
T Consensus 155 ~l~-~G~v~~wG~n~~gq----------lg~------p~~~~~~v~~i~~G~~hs~a--l-~-~G~v~~wG~n~~gqlg~ 213 (282)
T 3qhy_B 155 AVK-NGGVIAWGDNYFGQ----------TTV------PAEAQSGVDDVAGGIFHSLA--L-K-DGKVIAWGDNRYKQTTV 213 (282)
T ss_dssp EEE-TTEEEEEECCTTST----------TSC------CGGGGSSEEEEEECSSEEEE--E-E-TTEEEEEECCTTSTTCC
T ss_pred EEE-CCEEEEecCCCCCC----------CCC------ceecCCCeEEEEecCCEEEE--E-E-CCeEEEEECCCCCCCCC
Confidence 233 79999995443210 000 00112456667655433332 2 4 89999998654221111
Q ss_pred eeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCcc
Q psy9598 760 LKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQ 799 (1915)
Q Consensus 760 l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~ 799 (1915)
-......|..|+... ...++.. ||.|+.|-.....+
T Consensus 214 p~~~~~~v~~i~~G~--~h~~al~--~g~v~~wG~n~~gq 249 (282)
T 3qhy_B 214 PTEALSGVSAIASGE--WYSLALK--NGKVIAWGSSRTAP 249 (282)
T ss_dssp CGGGGSSCCEEEECS--SCEEEEE--TTEEEEESTTCCCC
T ss_pred CcccCCCceEEEcCC--CEEEEEE--CCEEEEecCCCCcc
Confidence 111123466776554 2333333 99999997655443
|
| >3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=85.42 E-value=72 Score=38.47 Aligned_cols=195 Identities=7% Similarity=-0.118 Sum_probs=87.2
Q ss_pred CEEEEEECCCcEEEEECCC-CcEEEEE--eCCCCCEEEEEEeC--CCCEEEEEeCCC----cEEEEECCCCceEEEeec-
Q psy9598 489 EVIVTGADDLLIKLWRARD-GKLLATL--RGCSGEISDIAIDN--RNILLAAGTVDK----TIRIWNLQTLAPISVLVG- 558 (1915)
Q Consensus 489 ~~LaTGs~Dg~I~IWd~~t-g~~~~~l--~gH~~~I~~Lafsp--dg~~LaSgs~Dg----tIrVWDl~tg~~~~~l~~- 558 (1915)
..|++|+..| +.+++... +.....+ ......|.+|++.| .+.++|.+. .| .|... ...|..-..+..
T Consensus 23 g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~-~g~~g~gl~~s-~D~G~tW~~~~~~ 99 (394)
T 3b7f_A 23 VMLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAAR-TGHLGPTVFRS-DDGGGNWTEATRP 99 (394)
T ss_dssp CEEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEE-C--CCEEEEEE-SSTTSCCEECSBC
T ss_pred CEEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEec-CCCCCccEEEe-CCCCCCceECCcc
Confidence 4677777777 44444332 2211111 12345699999998 555555443 44 33332 222322222211
Q ss_pred -------------CCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceecc--Cccc--ccc---ccCCCC
Q psy9598 559 -------------HQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFH--EPVM--FNE---RIRPGN 618 (1915)
Q Consensus 559 -------------h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~--~~~~--~~~---~~~~~~ 618 (1915)
+...|.+|++.|.. ....|++++..+.|...+ ..+......... .+.. +.. .-....
T Consensus 100 ~~~~~~~~~~~~~~~~~i~~l~~~~~~--~~~~l~~g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~ 176 (394)
T 3b7f_A 100 PAFNKAPEGETGRVVDHVFWLTPGHAS--EPGTWYAGTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDG 176 (394)
T ss_dssp CCCCCCC----CCCCCEEEEEEECCTT--STTCEEEEEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CCC
T ss_pred ccCCCcccccccccccceeEEEeCCCC--CCCEEEEEecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCCC
Confidence 11257788887621 025566666556554432 112111111000 0000 000 001123
Q ss_pred CceEEEEECCC-CcEEEEEeCCCeEEEEEecCCCCCceeEE-ecc-C--------CCCeeEEEEcCC-CCEEEEEeCCCc
Q psy9598 619 AHILCSSFSPG-GLFLATGSGDHHVRVYKMDGVDSPLGILE-VEE-H--------SDKVDSIQWSHS-HLRFVSGSRDGT 686 (1915)
Q Consensus 619 ~~V~~l~fspd-g~~Lasgs~Dg~I~IwDl~~~~~~~~i~~-l~~-h--------~~~V~sl~fspd-g~~L~sgs~DG~ 686 (1915)
..+.+|.++|. ...|++|..++.|...+- ...+...+.. +.. + ...+.+|++++. ...|++++..|
T Consensus 177 ~~i~~i~~d~~~~~~l~vg~~~ggl~~s~D-gG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g- 254 (394)
T 3b7f_A 177 PKMHSILVDPRDPKHLYIGMSSGGVFESTD-AGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG- 254 (394)
T ss_dssp CEEEEEEECTTCTTCEEEEEETBEEEEESS-TTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-
T ss_pred CceeEEEECCCCCCEEEEEECCCCEEEECC-CCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-
Confidence 46889999983 345555555554433321 2222221110 000 0 134889999886 35676666554
Q ss_pred EEEEE
Q psy9598 687 ALIWY 691 (1915)
Q Consensus 687 I~IWD 691 (1915)
|...+
T Consensus 255 l~~s~ 259 (394)
T 3b7f_A 255 IYRMD 259 (394)
T ss_dssp EEEEE
T ss_pred EEEeC
Confidence 44433
|
| >4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B | Back alignment and structure |
|---|
Probab=85.25 E-value=1.1e+02 Score=42.02 Aligned_cols=40 Identities=8% Similarity=0.179 Sum_probs=34.5
Q ss_pred cccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEee
Q psy9598 721 KIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLK 761 (1915)
Q Consensus 721 ~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~ 761 (1915)
...+.+++..++..++++-+. |++++||++.+++++.+..
T Consensus 235 ~~~~~~~~~~~~~~~lftl~~-D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 235 PNTIISMIFLSTYNVLVMLSL-DYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp TTCEEEEEEETTTTEEEEEET-TCEEEEEETTTTEEEEEEE
T ss_pred cceEEEEeecCCCcEEEEEEC-CCEEEEEECCCCCeEeeec
Confidence 345777888888999999998 9999999999999998764
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=84.36 E-value=91 Score=38.78 Aligned_cols=53 Identities=11% Similarity=0.060 Sum_probs=34.5
Q ss_pred CCEEEEEEeCCCC-EEEEEeCCCcEEEEECCCC---ceEEEee---------cCCCCeEEEEeccC
Q psy9598 519 GEISDIAIDNRNI-LLAAGTVDKTIRIWNLQTL---APISVLV---------GHQGIITGVNFCPL 571 (1915)
Q Consensus 519 ~~I~~Lafspdg~-~LaSgs~DgtIrVWDl~tg---~~~~~l~---------~h~~~V~sl~fsp~ 571 (1915)
..-..|+|.|+|. .|+++...|.|++++.... ..+..+. +.......|+|+|.
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~ 79 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN 79 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence 3467899999986 3444567899999975432 1222221 11356789999995
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=81.59 E-value=86 Score=36.51 Aligned_cols=177 Identities=10% Similarity=-0.025 Sum_probs=90.2
Q ss_pred EEECCCCcEEEEEe--CCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeC-CCcEEEEEccCCceEEe
Q psy9598 624 SSFSPGGLFLATGS--GDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSR-DGTALIWYYKCSQWRFI 700 (1915)
Q Consensus 624 l~fspdg~~Lasgs--~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~-DG~I~IWDl~~~~~~~~ 700 (1915)
..|++++.+|+-.. .++.-.||-+...... ...+..+.. ++|++++..|+-.+. ...|.+-++..+....+
T Consensus 109 ~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~--~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l 182 (302)
T 3s25_A 109 IYASLIGNYIYYLHYDTQTATSLYRIRIDGEE--KKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALF 182 (302)
T ss_dssp EEEEEETTEEEEEEESSSSCEEEEEEETTSCC--CEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEE
T ss_pred cEEEEeCCEEEEEeecCCCCceEEEEECCCCC--eEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEE
Confidence 36777888888765 3444444444322222 122323322 345677887775554 56676666655542221
Q ss_pred eecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecC-CeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCE
Q psy9598 701 RLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFN-FQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRV 779 (1915)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~D-g~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~ 779 (1915)
. ..... ..++|++.+|+-+...+ ..|..-++..+. ...|.. ..+ ..|+| ++.+
T Consensus 183 ~-------------------~~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~-~~~Lt~--~~~--~~~~~-~g~~ 236 (302)
T 3s25_A 183 Y-------------------DCNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPN-PVVLTE--ANI--EHYNV-YGSL 236 (302)
T ss_dssp E-------------------CSCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCC-CEECSC--SCE--EEEEE-ETTE
T ss_pred e-------------------CCCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCCC-eEEEeC--CCc--ceEEE-CCCE
Confidence 1 00111 23558999988876522 367777775544 333432 223 33677 6666
Q ss_pred EEEEe--cCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEEe-CCCeEEEEeCC
Q psy9598 780 LLSAG--HDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTD-SYGHLLVYGLG 844 (1915)
Q Consensus 780 LaSgs--~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~-~dG~I~Iwdl~ 844 (1915)
|+-+. ..+.|..-++..... ..+. . +.+. ++++.+.+|+..+ ..+.|....+.
T Consensus 237 Iy~~~~~~~~~i~~~~~DG~~r---~~l~---~----~~~~--~i~i~~d~Iy~td~~~~~i~~~~~d 292 (302)
T 3s25_A 237 IFYQRGGDNPALCVVKNDGTGF---KELA---K----GEFC--NINVTSQYVYFTDFVSNKEYCTSTQ 292 (302)
T ss_dssp EEEEECSSSCEEEEEETTSCCC---EEEE---E----SCEE--EEEECSSEEEEEETTTCCEEEEESS
T ss_pred EEEEECCCCcEEEEEECCCCcc---EEee---C----Cccc--eEEEeCCEEEEEECCCCeEEEEECC
Confidence 66543 345666667655433 1121 1 1122 4455667776665 23444444443
|
| >2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A | Back alignment and structure |
|---|
Probab=81.39 E-value=1 Score=42.22 Aligned_cols=55 Identities=16% Similarity=0.111 Sum_probs=41.6
Q ss_pred cHHHHHHHHHHhccCChHHHHHHHHHHHHhcCcCcccccccCccccccHHHHHhcCCCCCCChHHHHHHHhCCC
Q psy9598 306 DQELMLLIIKYLEKGPCHEAAKVLTDLVEAKNLLPERYDWEGATHSQTLAEVASSHPNVTASFLPKICQRLGPL 379 (1915)
Q Consensus 306 ~~e~~~li~~~L~~~~~~~aa~~L~~e~~~~~llp~r~~~~g~~~~~~~~~l~~~~~~i~~~~L~~l~~~l~pl 379 (1915)
..|+.+||++||++.|+..||.+|.+|..-.+ |. ....+|+|..|+.++|+.--+
T Consensus 5 sdevN~LI~RYLqEsGf~hsAf~f~~Es~i~~-------~~------------~~~~~VppgaLVsllQKGL~Y 59 (90)
T 2xtc_A 5 SDEVNFLVYRYLQESGFSHSAFTFGIESHISQ-------SN------------INGTLVPPAALISILQKGLQY 59 (90)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHTTGGG-------SC------------CCGGGSCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHhcCCc-------cc------------cccccCCcchHHHHHHHHHHH
Confidence 46899999999999999999999999972110 10 011458999999999987433
|
| >4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi} | Back alignment and structure |
|---|
Probab=80.84 E-value=1.1e+02 Score=40.26 Aligned_cols=237 Identities=9% Similarity=0.039 Sum_probs=115.5
Q ss_pred EcCCCCEEEEEE-----CCCcEEEEECCCCcEEE-EEeCCCC--------CEEEEEEeCCCCEEEEEe----------CC
Q psy9598 484 FDKLGEVIVTGA-----DDLLIKLWRARDGKLLA-TLRGCSG--------EISDIAIDNRNILLAAGT----------VD 539 (1915)
Q Consensus 484 fspdg~~LaTGs-----~Dg~I~IWd~~tg~~~~-~l~gH~~--------~I~~Lafspdg~~LaSgs----------~D 539 (1915)
++|++++++.+- +-..|+++|+.+++.+. .|. ... ....++|..++.++++.. ..
T Consensus 137 ~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~-~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~~~~~~~~ 215 (711)
T 4hvt_A 137 CFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFE-PITNSGKLLEGKFTYPTWINKDTIIFNLVLHKNEITSSLYP 215 (711)
T ss_dssp CSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSC-CBCTTCCBCCEETCCEEEEETTEEEECCCCSTTCBCTTSSB
T ss_pred cCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcc-cccccccccccccceeeEECCCEEEEEeCCCCCCcCcCCCC
Confidence 789998877652 22479999999998763 111 000 113458875555555421 12
Q ss_pred CcEEEEECCCCc--eEEEeecCCCCeE-EEEeccCccCCCc---EEEEEeCC---CeEEEEecccCccc-cceeccCccc
Q psy9598 540 KTIRIWNLQTLA--PISVLVGHQGIIT-GVNFCPLEVNGFN---YLASTSTD---GCIGFWKYKLDIDI-SKTVFHEPVM 609 (1915)
Q Consensus 540 gtIrVWDl~tg~--~~~~l~~h~~~V~-sl~fsp~~~~d~~---~L~sgs~D---gtI~iWDl~~~~~~-~~~~~~~~~~ 609 (1915)
..|+.|.+.+.. -...+.+....+. ++..+.+. ... .+++.+.+ ..+.+.+....... ..+..
T Consensus 216 ~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~----- 288 (711)
T 4hvt_A 216 NSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSD--TISSSLIFISANKDFYNYDNYILDTKYKNLKLQKINM----- 288 (711)
T ss_dssp CEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCT--TTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEECCS-----
T ss_pred CEEEEEECCCChHHCeEEeccCCCceEEEEEEecCC--CceEEEEEEEEecccCceeEEEEcCCCCCCcceEeec-----
Confidence 568999887643 2334444333332 23333322 221 34444322 33455554422110 11111
Q ss_pred cccccCCCCCceEEEEECCCCcEEEEE----------eCCCeEEEEEecCCCC----CceeEE-e-ccCCCCeeEEEEcC
Q psy9598 610 FNERIRPGNAHILCSSFSPGGLFLATG----------SGDHHVRVYKMDGVDS----PLGILE-V-EEHSDKVDSIQWSH 673 (1915)
Q Consensus 610 ~~~~~~~~~~~V~~l~fspdg~~Lasg----------s~Dg~I~IwDl~~~~~----~~~i~~-l-~~h~~~V~sl~fsp 673 (1915)
+.... +..+.++.+++.. ...+.|.+.++..... ...... + ......+..+.|..
T Consensus 289 ------~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 359 (711)
T 4hvt_A 289 ------PSDAT---LQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTK 359 (711)
T ss_dssp ------CTTCE---EEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECS
T ss_pred ------CCcce---EeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEEC
Confidence 11111 1233455554422 2467788888854211 111222 2 23344677888886
Q ss_pred CCCEEEEEeCCCc--EEEEEccCCceEEee-ecccccCCCCccccccccccccEEEEEECCCCCEEEEEE-e--cCCeEE
Q psy9598 674 SHLRFVSGSRDGT--ALIWYYKCSQWRFIR-LDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAI-N--FNFQIK 747 (1915)
Q Consensus 674 dg~~L~sgs~DG~--I~IWDl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s-~--~Dg~I~ 747 (1915)
+ .++++...+|. |.++++.++.+.... .. . ...+.+..+.+++++..++... + .-+.+.
T Consensus 360 ~-~l~~~~~~~~~~~l~~~~~~~g~~~~~~~i~-------------l-p~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~ 424 (711)
T 4hvt_A 360 D-RVFLATYDNVVAKVVTFTLENEQWTKPVVLK-------------L-PYQNAIFGMSSYEEEEEALITIENSIVPPTIY 424 (711)
T ss_dssp S-CEEEEEEETTEEEEEEECEETTEECCCEEEC-------------C-CSTTCEEEEECCTTCSCEEEEEECSSSCCEEE
T ss_pred C-EEEEEEEECCEEEEEEEECCCCceEEEeccC-------------C-CCCeEEEEEeecCcCCEEEEEEecCCCCCEEE
Confidence 5 56777777775 556666555321100 00 0 0113455566667665444433 2 235677
Q ss_pred EEECC
Q psy9598 748 IWDAF 752 (1915)
Q Consensus 748 vwD~~ 752 (1915)
.+|+.
T Consensus 425 ~~d~~ 429 (711)
T 4hvt_A 425 LWVKT 429 (711)
T ss_dssp EECTT
T ss_pred EEeCC
Confidence 77776
|
| >4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi} | Back alignment and structure |
|---|
Probab=80.77 E-value=1.5e+02 Score=38.89 Aligned_cols=73 Identities=16% Similarity=0.223 Sum_probs=42.9
Q ss_pred cccEEEEEECCCCCEEEEEEecCC--eEEEEECCCCc-eEEE-eeCC-CCCeEEEEEccCCCCEEEEEec---CceEEEE
Q psy9598 721 KIKVTMVAWDASDRWVITAINFNF--QIKIWDAFNGD-LVQV-LKGH-TNEVFVLESHPFDSRVLLSAGH---DGLIIIW 792 (1915)
Q Consensus 721 ~~~V~~va~spdg~~L~t~s~~Dg--~I~vwD~~tg~-~i~~-l~gH-~~~V~sl~~sp~dg~~LaSgs~---DG~I~IW 792 (1915)
...+..+.|..+ .++++... ++ .|.++++.++. .+.. +... .+.|..+.+.+..+.++++.+. -+.|..+
T Consensus 349 ~~~l~~~~~~~~-~l~~~~~~-~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~ 426 (711)
T 4hvt_A 349 NEVFNFISTTKD-RVFLATYD-NVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIENSIVPPTIYLW 426 (711)
T ss_dssp TEEEEEEEECSS-CEEEEEEE-TTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEECSSSCCEEEEE
T ss_pred CCeEEEEEEECC-EEEEEEEE-CCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEecCCCCCEEEEE
Confidence 456778888865 45555544 66 46777776664 2222 2211 2456666666644556666554 3678888
Q ss_pred ECC
Q psy9598 793 DIL 795 (1915)
Q Consensus 793 dl~ 795 (1915)
|+.
T Consensus 427 d~~ 429 (711)
T 4hvt_A 427 VKT 429 (711)
T ss_dssp CTT
T ss_pred eCC
Confidence 876
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1915 | ||||
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 3e-34 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 1e-32 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 2e-20 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 5e-20 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 3e-14 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 3e-32 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 3e-17 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 4e-14 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 3e-13 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 5e-31 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 1e-17 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 3e-17 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 4e-11 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 5e-11 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 3e-30 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 6e-13 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 6e-06 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 0.002 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 2e-27 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 2e-17 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 2e-13 | |
| d1eqfa1 | 139 | a.29.2.1 (A:1359-1497) TAFII250 double bromodomain | 6e-22 | |
| d1eqfa1 | 139 | a.29.2.1 (A:1359-1497) TAFII250 double bromodomain | 6e-22 | |
| d1eqfa1 | 139 | a.29.2.1 (A:1359-1497) TAFII250 double bromodomain | 2e-16 | |
| d1eqfa1 | 139 | a.29.2.1 (A:1359-1497) TAFII250 double bromodomain | 7e-05 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 1e-21 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 1e-12 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 2e-10 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 2e-08 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 1e-21 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 2e-07 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 2e-04 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 0.002 | |
| d1e6ia_ | 111 | a.29.2.1 (A:) GCN5 {Baker's yeast (Saccharomyces c | 2e-21 | |
| d1e6ia_ | 111 | a.29.2.1 (A:) GCN5 {Baker's yeast (Saccharomyces c | 2e-21 | |
| d1e6ia_ | 111 | a.29.2.1 (A:) GCN5 {Baker's yeast (Saccharomyces c | 4e-14 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 3e-21 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 8e-10 | |
| d3d7ca1 | 102 | a.29.2.1 (A:731-832) GCN5 {Human (Homo sapiens) [T | 9e-21 | |
| d3d7ca1 | 102 | a.29.2.1 (A:731-832) GCN5 {Human (Homo sapiens) [T | 9e-21 | |
| d3d7ca1 | 102 | a.29.2.1 (A:731-832) GCN5 {Human (Homo sapiens) [T | 7e-15 | |
| d3d7ca1 | 102 | a.29.2.1 (A:731-832) GCN5 {Human (Homo sapiens) [T | 8e-05 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 2e-20 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 2e-07 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 1e-05 | |
| d3dwya1 | 114 | a.29.2.1 (A:1084-1197) CREB-binding protein, CBP { | 2e-20 | |
| d3dwya1 | 114 | a.29.2.1 (A:1084-1197) CREB-binding protein, CBP { | 2e-20 | |
| d3dwya1 | 114 | a.29.2.1 (A:1084-1197) CREB-binding protein, CBP { | 1e-10 | |
| d3dwya1 | 114 | a.29.2.1 (A:1084-1197) CREB-binding protein, CBP { | 0.002 | |
| d1eqfa2 | 128 | a.29.2.1 (A:1498-1625) TAFII250 double bromodomain | 3e-20 | |
| d1eqfa2 | 128 | a.29.2.1 (A:1498-1625) TAFII250 double bromodomain | 3e-20 | |
| d1eqfa2 | 128 | a.29.2.1 (A:1498-1625) TAFII250 double bromodomain | 2e-16 | |
| d1eqfa2 | 128 | a.29.2.1 (A:1498-1625) TAFII250 double bromodomain | 1e-04 | |
| d1wuma1 | 118 | a.29.2.1 (A:715-832) P300/CAF histone acetyltransf | 5e-20 | |
| d1wuma1 | 118 | a.29.2.1 (A:715-832) P300/CAF histone acetyltransf | 5e-20 | |
| d1wuma1 | 118 | a.29.2.1 (A:715-832) P300/CAF histone acetyltransf | 2e-15 | |
| d1wuma1 | 118 | a.29.2.1 (A:715-832) P300/CAF histone acetyltransf | 4e-05 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 2e-19 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 1e-07 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 2e-04 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 5e-19 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 1e-17 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 1e-15 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 3e-06 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 2e-17 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 6e-05 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 7e-17 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 2e-07 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 3e-04 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 5e-16 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 9e-08 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 3e-07 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 2e-15 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 5e-10 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 6e-14 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 1e-12 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 3e-04 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 2e-12 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 8e-07 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 2e-06 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 2e-05 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 6e-10 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 4e-04 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 3e-08 | |
| d1ri6a_ | 333 | b.69.11.1 (A:) Putative isomerase YbhE {Escherichi | 3e-07 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 3e-07 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 0.001 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 2e-06 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 2e-05 | |
| d1jofa_ | 365 | b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactoniz | 0.004 |
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 132 bits (333), Expect = 3e-34
Identities = 67/324 (20%), Positives = 128/324 (39%), Gaps = 25/324 (7%)
Query: 474 GHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILL 533
GH S V V+F + V+V+ ++D IK+W G TL+G + + DI+ D+ LL
Sbjct: 15 GHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLL 74
Query: 534 AAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKY 593
A+ + D TI++W+ Q I + GH ++ V+ P +++ S S D I W+
Sbjct: 75 ASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMP----NGDHIVSASRDKTIKMWEV 130
Query: 594 KLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSP 653
+ + H + + G +A+ S D VRV+ + +
Sbjct: 131 QTGYCVKTFTGHREWVR------------MVRPNQDGTLIASCSNDQTVRVWVVATKEC- 177
Query: 654 LGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKE 713
E+ EH V+ I W+ G+ K + T
Sbjct: 178 --KAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVS 235
Query: 714 TSDETNK----KIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFV 769
T V V + + +++++ + +++WD N ++ L H + V
Sbjct: 236 TGMCLMTLVGHDNWVRGVLFHSGGKFILSC-ADDKTLRVWDYKNKRCMKTLNAHEHFVTS 294
Query: 770 LESHPFDSRVLLSAGHDGLIIIWD 793
L+ H + +++ D + +W+
Sbjct: 295 LDFHK-TAPYVVTGSVDQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 128 bits (321), Expect = 1e-32
Identities = 50/344 (14%), Positives = 108/344 (31%), Gaps = 31/344 (9%)
Query: 501 KLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQ 560
K W R L G ++ + ++ + + D TI++W+ +T L GH
Sbjct: 1 KEWIPR-PPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHT 59
Query: 561 GIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAH 620
+ ++F K + + + +
Sbjct: 60 DSVQDISFDH----------------SGKLLASCSADMTIKLWDFQGFECIRTMHGHDHN 103
Query: 621 ILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVS 680
+ S P G + + S D +++++ V + + H + V ++ + S
Sbjct: 104 VSSVSIMPNGDHIVSASRDKTIKMWE---VQTGYCVKTFTGHREWVRMVRPNQDGTLIAS 160
Query: 681 GSRDGTALIWYYKCSQWRFIRL---DMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVI 737
S D T +W + + + C+ E+S + + + +
Sbjct: 161 CSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFL 220
Query: 738 TAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSS 797
+ + + IK+WD G + L GH N V + H + +LS D + +WD +
Sbjct: 221 LSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHS-GGKFILSCADDKTLRVWDYKNK 279
Query: 798 KQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVY 841
+ H E + + + V+
Sbjct: 280 RCMKTLNAH-------EHFVTSLDFHKTAPYVVTGSVDQTVKVW 316
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 92.1 bits (227), Expect = 2e-20
Identities = 32/161 (19%), Positives = 60/161 (37%), Gaps = 8/161 (4%)
Query: 432 NSVKVHNTVNVLRSREYSGPLSRSLMISSHKYSNLRQHYVNLGHLSAVFCVLFDKLGEVI 491
+V+V E IS S Y ++ + K G +
Sbjct: 165 QTVRVWVVATKECKAELREHRHVVECISWAPES----SYSSISEATGSETKKSGKPGPFL 220
Query: 492 VTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLA 551
++G+ D IK+W G L TL G + + + + + DKT+R+W+ +
Sbjct: 221 LSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKR 280
Query: 552 PISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWK 592
+ L H+ +T ++F Y+ + S D + W+
Sbjct: 281 CMKTLNAHEHFVTSLDFHK---TA-PYVVTGSVDQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 91.0 bits (224), Expect = 5e-20
Identities = 50/250 (20%), Positives = 90/250 (36%), Gaps = 31/250 (12%)
Query: 457 MISSHKYSNLRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRG 516
I + GH V V G+ IV+ + D IK+W + G + T G
Sbjct: 82 TIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTG 141
Query: 517 CSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGF 576
+ + + L+A+ + D+T+R+W + T + L H+ ++ +++ P
Sbjct: 142 HREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSS 201
Query: 577 ----------------NYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAH 620
+L S S D I W + + V H+
Sbjct: 202 ISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHD------------NW 249
Query: 621 ILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVS 680
+ F GG F+ + + D +RV+ + L H V S+ + + V+
Sbjct: 250 VRGVLFHSGGKFILSCADDKTLRVWDYKN-KRCMKTL--NAHEHFVTSLDFHKTAPYVVT 306
Query: 681 GSRDGTALIW 690
GS D T +W
Sbjct: 307 GSVDQTVKVW 316
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 73.6 bits (179), Expect = 3e-14
Identities = 26/131 (19%), Positives = 53/131 (40%)
Query: 415 SSYDYIARQHGTSLLVPNSVKVHNTVNVLRSREYSGPLSRSLMISSHKYSNLRQHYVNLG 474
+ I+ +S + T + + SR I S +G
Sbjct: 186 HVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVG 245
Query: 475 HLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLA 534
H + V VLF G+ I++ ADD +++W ++ + + TL ++ + +
Sbjct: 246 HDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVV 305
Query: 535 AGTVDKTIRIW 545
G+VD+T+++W
Sbjct: 306 TGSVDQTVKVW 316
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 127 bits (320), Expect = 3e-32
Identities = 55/329 (16%), Positives = 105/329 (31%), Gaps = 32/329 (9%)
Query: 465 NLRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDI 524
+R GHL+ ++ + + ++V+ + D + +W + + + S +
Sbjct: 44 QMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTC 103
Query: 525 AIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTST 584
A +A G +D I+NL+T G E+ G S
Sbjct: 104 AYAPSGNYVACGGLDNICSIYNLKT-------------REGNVRVSRELAGHTGYLSCCR 150
Query: 585 DGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRV 644
E ++ S +P +G+ D ++
Sbjct: 151 FLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKL 210
Query: 645 YKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDM 704
+ V + H +++I + + F +GS D T ++ + Q
Sbjct: 211 WD---VREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHD 267
Query: 705 NTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHT 764
N +T V++ S R ++ +F +WDA D VL GH
Sbjct: 268 NIICG--------------ITSVSFSKSGRLLLAG-YDDFNCNVWDALKADRAGVLAGHD 312
Query: 765 NEVFVLESHPFDSRVLLSAGHDGLIIIWD 793
N V L D + + D + IW+
Sbjct: 313 NRVSCLGVTD-DGMAVATGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 83.2 bits (204), Expect = 3e-17
Identities = 38/185 (20%), Positives = 62/185 (33%), Gaps = 14/185 (7%)
Query: 461 HKYSNLRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGE 520
+Q GH V + + V+GA D KLW R+G T G +
Sbjct: 169 WDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESD 228
Query: 521 ISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLA 580
I+ I A G+ D T R+++ + H II G+ +G L
Sbjct: 229 INAICFFPNGNAFATGSDDATCRLFD-LRADQELMTYSHDNIICGITSVSFSKSG-RLLL 286
Query: 581 STSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDH 640
+ D W H+ + C + G+ +ATGS D
Sbjct: 287 AGYDDFNCNVWDALKADRAGVLAGHD------------NRVSCLGVTDDGMAVATGSWDS 334
Query: 641 HVRVY 645
++++
Sbjct: 335 FLKIW 339
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 73.6 bits (179), Expect = 4e-14
Identities = 22/115 (19%), Positives = 44/115 (38%), Gaps = 4/115 (3%)
Query: 432 NSVKVHNTVNVLRSREYSGPLSRSLMISSHKYSNLRQHYVNLGHLSAVFCVLFDKLGEVI 491
N++ N +G + + + Y + + + V F K G ++
Sbjct: 230 NAICFFPNGNAF----ATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL 285
Query: 492 VTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWN 546
+ G DD +W A L G +S + + + + +A G+ D ++IWN
Sbjct: 286 LAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 71.3 bits (173), Expect = 3e-13
Identities = 49/347 (14%), Positives = 103/347 (29%), Gaps = 49/347 (14%)
Query: 525 AIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTST 584
A + + +D RI + L GH I +++ + L S S
Sbjct: 24 ACADATLSQITNNIDPVGRI----QMRTRRTLRGHLAKIYAMHWGT---DS-RLLVSASQ 75
Query: 585 DGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRV 644
DG + W + I ++ ++ +++P G ++A G D+ +
Sbjct: 76 DGKLIIWDSYTTNKVH------------AIPLRSSWVMTCAYAPSGNYVACGGLDNICSI 123
Query: 645 YKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDM 704
Y + + + + S + V+ S D T +W + Q
Sbjct: 124 YNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGH 183
Query: 705 NTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHT 764
V ++ R ++ + K+WD G Q GH
Sbjct: 184 TGD----------------VMSLSLAPDTRLFVSG-ACDASAKLWDVREGMCRQTFTGHE 226
Query: 765 NEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSP 824
+++ + P + + D ++D+ + ++ NI+ G + +S
Sbjct: 227 SDINAICFFP-NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICG-----ITSVSFSK 280
Query: 825 DGTTCALTDSYGHLLVYGLGGFKRPQNIP------RELFFHTDYRTL 865
G + V+ R + L D +
Sbjct: 281 SGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAV 327
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 125 bits (313), Expect = 5e-31
Identities = 59/334 (17%), Positives = 116/334 (34%), Gaps = 19/334 (5%)
Query: 473 LGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNIL 532
L H S V CV F GE + TG + +++R DG L+A L S D N +
Sbjct: 59 LDHTSVVCCVKFSNDGEYLATGCNKT-TQVYRVSDGSLVARLSDDSAANKDPENLNTSSS 117
Query: 533 LAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWK 592
++ +++ ++ + I + + + + +
Sbjct: 118 PSSDLYIRSVC-FSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGD 176
Query: 593 YKLDIDISKTVFHEPVMFNERIRPG---NAHILCSSFSPGGLFLATGSGDHHVRVYKMDG 649
+ +TV + + + + G ++A GS D VRV+ +
Sbjct: 177 KLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSET 236
Query: 650 VDSPLGILEVEE----HSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMN 705
+ E H D V S+ ++ VSGS D + +W + + + N
Sbjct: 237 GFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPN 296
Query: 706 TCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTN 765
+ + V VA +D ++++ + + + WD +G+ + +L+GH N
Sbjct: 297 SGTCEVTYIGHKDF----VLSVATTQNDEYILSG-SKDRGVLFWDKKSGNPLLMLQGHRN 351
Query: 766 EVFVLESHPF-----DSRVLLSAGHDGLIIIWDI 794
V + + V + D IW
Sbjct: 352 SVISVAVANGSSLGPEYNVFATGSGDCKARIWKY 385
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 85.2 bits (209), Expect = 1e-17
Identities = 44/213 (20%), Positives = 82/213 (38%), Gaps = 20/213 (9%)
Query: 494 GADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTL--- 550
G+ D +++W R G+ TL G + +AAG++D+ +R+W+ +T
Sbjct: 181 GSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLV 240
Query: 551 ----APISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHE 606
+ GH+ + V F +G + S S D + W + + S +
Sbjct: 241 ERLDSENESGTGHKDSVYSVVFTR---DG-QSVVSGSLDRSVKLWNLQNANNKSDSKTPN 296
Query: 607 PVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKV 666
+L + + ++ +GS D V + S +L ++ H + V
Sbjct: 297 SGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWD---KKSGNPLLMLQGHRNSV 353
Query: 667 DSIQWSHSHL------RFVSGSRDGTALIWYYK 693
S+ ++ F +GS D A IW YK
Sbjct: 354 ISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 83.7 bits (205), Expect = 3e-17
Identities = 32/141 (22%), Positives = 63/141 (44%), Gaps = 14/141 (9%)
Query: 468 QHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLA------------TLR 515
++ GH +V+ V+F + G+ +V+G+ D +KLW ++ + T
Sbjct: 246 ENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYI 305
Query: 516 GCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNG 575
G + +A + + +G+ D+ + W+ ++ P+ +L GH+ + V G
Sbjct: 306 GHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLG 365
Query: 576 --FNYLASTSTDGCIGFWKYK 594
+N A+ S D WKYK
Sbjct: 366 PEYNVFATGSGDCKARIWKYK 386
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 64.8 bits (156), Expect = 4e-11
Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 6/78 (7%)
Query: 479 VFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNI------L 532
V V + E I++G+ D + W + G L L+G + +A+ N + +
Sbjct: 311 VLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNV 370
Query: 533 LAAGTVDKTIRIWNLQTL 550
A G+ D RIW + +
Sbjct: 371 FATGSGDCKARIWKYKKI 388
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 64.4 bits (155), Expect = 5e-11
Identities = 42/322 (13%), Positives = 93/322 (28%), Gaps = 53/322 (16%)
Query: 550 LAPISVLVGHQGIITGVNFCP-LEVNGFNYLASTSTDGCIGFW----KYKLDIDISKTVF 604
L P + H I F L+ T+ + ++D+++ K++
Sbjct: 3 LVPYNQRANHSKPIPP--FLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLD 60
Query: 605 HEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMD---------------G 649
H + + C FS G +LATG + +VY++
Sbjct: 61 HT------------SVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANK 107
Query: 650 VDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLP 709
L + S+ +S +G+ D IW + + I +
Sbjct: 108 DPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIY 167
Query: 710 HTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFV 769
+ + + + ++IWD G + V
Sbjct: 168 SL-----------------DYFPSGDKLVSGSGDRTVRIWDLRTGQCSLT-LSIEDGVTT 209
Query: 770 LESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTC 829
+ P D + + + D + +WD + N + +++ ++ DG +
Sbjct: 210 VAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSV 269
Query: 830 ALTDSYGHLLVYGLGGFKRPQN 851
+ ++ L +
Sbjct: 270 VSGSLDRSVKLWNLQNANNKSD 291
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 123 bits (307), Expect = 3e-30
Identities = 39/367 (10%), Positives = 107/367 (29%), Gaps = 37/367 (10%)
Query: 474 GHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGK----LLATLRGCSGEISDIAID-- 527
H + +F V V+ + D +K+W + + + +D
Sbjct: 12 AHDADIFSVSAC--NSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVL 69
Query: 528 -------NRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNG----- 575
L+A + + + + ++ + + +
Sbjct: 70 QAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGA 129
Query: 576 ------FNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNE------RIRPGNAHILC 623
+ L +T G WK+ D S ++ E +
Sbjct: 130 SNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATS 189
Query: 624 SSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHS---DKVDSIQWSHSHLRFVS 680
S GL +ATG + V++ ++ + + + S+++S
Sbjct: 190 VDISERGL-IATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAI 248
Query: 681 GSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAI 740
+ +++ ++ ++ + E V ++++ S + +
Sbjct: 249 AHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCS-A 307
Query: 741 NFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQR 800
++ +++ WD + + L H +++ + E S G+ + + +
Sbjct: 308 GWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRS 367
Query: 801 GYKWFHN 807
G N
Sbjct: 368 GMGADLN 374
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 70.7 bits (171), Expect = 6e-13
Identities = 41/327 (12%), Positives = 93/327 (28%), Gaps = 45/327 (13%)
Query: 548 QTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEP 607
+A + H I V+ C ++ S S DG + W D + +
Sbjct: 2 VFIATANAGKAHDADIFSVSACN------SFTVSCSGDGYLKVW----DNKLLDNENPKD 51
Query: 608 VMFNERIRPGNAHILC-----SSFSPGGLFLATGSGDHHVRVYKMDGVD-------SPLG 655
++ + H + + +AT S + Y++ D L
Sbjct: 52 KSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLD 111
Query: 656 ILEVEEHSDKVDSIQWSHS-----HLRFVSGSRDGTALIWYY--KCSQWRFIRLDMNTCL 708
+L+ + +++W S R V+ GT IW + + + L+ + L
Sbjct: 112 LLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTL 171
Query: 709 PHTKETSDETNKKIKVTMVAWDASDRWVITA-----INFNFQIKIWDAFNGDLVQVLKGH 763
T V + T + + + +N + + +
Sbjct: 172 ELQGTVESPMTPSQFATSVDIS-ERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINN 230
Query: 764 TNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGE--------- 814
+N + ++ P S + A + ++ ++ +
Sbjct: 231 SNSIRSVKFSPQGSLL-AIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHS 289
Query: 815 GALFDGKWSPDGTTCALTDSYGHLLVY 841
+ ++ G T G L +
Sbjct: 290 SWVMSLSFNDSGETLCSAGWDGKLRFW 316
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 48.3 bits (113), Expect = 6e-06
Identities = 18/147 (12%), Positives = 38/147 (25%), Gaps = 27/147 (18%)
Query: 503 WRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGI 562
+ S + ++ ++ L + D +R W+++T I+ L H
Sbjct: 274 VPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDD 333
Query: 563 ITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHIL 622
I + LA G + K ++
Sbjct: 334 IEIEEDILAVDEHGDSLAEP------GVFDVKFLKKGWRSG------------------- 368
Query: 623 CSSFSPGGLFLATGSGDHHVRVYKMDG 649
+ L D +R ++ G
Sbjct: 369 --MGADLNESLCCVCLDRSIRWFREAG 393
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.2 bits (92), Expect = 0.002
Identities = 20/147 (13%), Positives = 45/147 (30%), Gaps = 15/147 (10%)
Query: 446 REYSGPLSRSLMISSHKYSNLRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRA 505
Y + S + + H S V + F+ GE + + D ++ W
Sbjct: 259 TLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDV 318
Query: 506 RDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITG 565
+ + + TL +I + + G +++++ L G+
Sbjct: 319 KTKERITTLNMHCDDIEIEE--DILAVDEHGDSLAEPGVFDVKFLKKG----WRSGMGAD 372
Query: 566 VNFCPLEVNGFNYLASTSTDGCIGFWK 592
+N L D I +++
Sbjct: 373 LN---------ESLCCVCLDRSIRWFR 390
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 113 bits (283), Expect = 2e-27
Identities = 55/355 (15%), Positives = 119/355 (33%), Gaps = 49/355 (13%)
Query: 503 WRARDGKLLATLRGCSGEI-SDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQG 561
WR + K L+G + + + + +G+ D T+++W+ T + LVGH G
Sbjct: 1 WRRGELKSPKVLKGHDDHVITCLQFCGN--RIVSGSDDNTLKVWSAVTGKCLRTLVGHTG 58
Query: 562 IITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHI 621
+ + + + + TV + +
Sbjct: 59 GVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDAT 118
Query: 622 LCSSFSPGG--------------------LFLATGSGDHHVRVYKMDGVDSPLGILEVEE 661
L G + +G+ D V+V+ + + ++
Sbjct: 119 LRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETC---LHTLQG 175
Query: 662 HSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKK 721
H+++V S+Q+ H+ VSGS D + +W + T
Sbjct: 176 HTNRVYSLQFDGIHV--VSGSLDTSIRVWDVETGNCIH------------------TLTG 215
Query: 722 IKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLL 781
+ + D +++ + +KIWD G +Q L+G + F+ ++
Sbjct: 216 HQSLTSGMELKDNILVSGNADS-TVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVI 274
Query: 782 SAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYG 836
++ DG + +WD+ + + + + G G ++ + S CA+ G
Sbjct: 275 TSSDDGTVKLWDLKTGEF--IRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNG 327
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 83.7 bits (205), Expect = 2e-17
Identities = 49/206 (23%), Positives = 89/206 (43%), Gaps = 25/206 (12%)
Query: 491 IVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTL 550
+V+GA D ++K+W L TL+G + + + D ++ +G++D +IR+W+++T
Sbjct: 150 VVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHV--VSGSLDTSIRVWDVETG 207
Query: 551 APISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMF 610
I L GHQ + +G+ N L S + D + W K + +
Sbjct: 208 NCIHTLTGHQSLTSGMELKD------NILVSGNADSTVKIWDIK---------TGQCLQT 252
Query: 611 NERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMD--GVDSPLGILEVEEHSDKVDS 668
+ + + C F+ F+ T S D V+++ + L LE V
Sbjct: 253 LQGPNKHQSAVTCLQFNKN--FVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWR 310
Query: 669 IQWSHSHLRFVSGSRDGTA----LIW 690
I+ S++ L GSR+GT L+
Sbjct: 311 IRASNTKLVCAVGSRNGTEETKLLVL 336
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 71.4 bits (173), Expect = 2e-13
Identities = 38/179 (21%), Positives = 68/179 (37%), Gaps = 18/179 (10%)
Query: 474 GHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILL 533
GH + V+ + FD G +V+G+ D I++W G + TL G S + + + +L
Sbjct: 175 GHTNRVYSLQFD--GIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDN--IL 230
Query: 534 AAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKY 593
+G D T++IW+++ L QG + N++ ++S DG + W
Sbjct: 231 VSGNADSTVKIWDIK---TGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDL 287
Query: 594 KLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDH----HVRVYKMD 648
K + + + S L A GS + + V D
Sbjct: 288 K-----TGEFIRN--LVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFD 339
|
| >d1eqfa1 a.29.2.1 (A:1359-1497) TAFII250 double bromodomain module {Human (Homo sapiens) [TaxId: 9606]} Length = 139 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Bromodomain-like superfamily: Bromodomain family: Bromodomain domain: TAFII250 double bromodomain module species: Human (Homo sapiens) [TaxId: 9606]
Score = 91.6 bits (227), Expect = 6e-22
Identities = 28/125 (22%), Positives = 57/125 (45%), Gaps = 2/125 (1%)
Query: 94 VRPTAVTRAQREAMNQKKLKRPFNWKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKI 153
V + R + ++++ + ++ + P++ PF PV+ DY KI
Sbjct: 4 VHCDYLNRPHKSI-HRRRTDPMVTLSSILESIINDMRDLPNTYPFHTPVNAKVVKDYYKI 62
Query: 154 VIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQNKRSKIYIMTTRLSEFAEE 213
+ PMDL T+RE +R Y S +F + ++ + NS YN + + ++ + + +E
Sbjct: 63 ITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYN-GPKHSLTQISQSMLDLCDE 121
Query: 214 HLRRL 218
L+
Sbjct: 122 KLKEK 126
|
| >d1eqfa1 a.29.2.1 (A:1359-1497) TAFII250 double bromodomain module {Human (Homo sapiens) [TaxId: 9606]} Length = 139 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Bromodomain-like superfamily: Bromodomain family: Bromodomain domain: TAFII250 double bromodomain module species: Human (Homo sapiens) [TaxId: 9606]
Score = 91.6 bits (227), Expect = 6e-22
Identities = 28/125 (22%), Positives = 57/125 (45%), Gaps = 2/125 (1%)
Query: 1509 VRPTAVTRAQREAMNQKKLKRPFNWKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKI 1568
V + R + ++++ + ++ + P++ PF PV+ DY KI
Sbjct: 4 VHCDYLNRPHKSI-HRRRTDPMVTLSSILESIINDMRDLPNTYPFHTPVNAKVVKDYYKI 62
Query: 1569 VIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQNKRSKIYIMTTRLSEFAEE 1628
+ PMDL T+RE +R Y S +F + ++ + NS YN + + ++ + + +E
Sbjct: 63 ITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYN-GPKHSLTQISQSMLDLCDE 121
Query: 1629 HLRRL 1633
L+
Sbjct: 122 KLKEK 126
|
| >d1eqfa1 a.29.2.1 (A:1359-1497) TAFII250 double bromodomain module {Human (Homo sapiens) [TaxId: 9606]} Length = 139 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Bromodomain-like superfamily: Bromodomain family: Bromodomain domain: TAFII250 double bromodomain module species: Human (Homo sapiens) [TaxId: 9606]
Score = 75.4 bits (185), Expect = 2e-16
Identities = 24/114 (21%), Positives = 47/114 (41%), Gaps = 1/114 (0%)
Query: 1360 HPRPDEWPQGDRDATCEKIITG-LEEVMGLSVAEPFLVPVDISQYPAYAYVVEYPVDLTT 1418
+ + D T I+ + ++ L PF PV+ Y ++ P+DL T
Sbjct: 12 PHKSIHRRRTDPMVTLSSILESIINDMRDLPNTYPFHTPVNAKVVKDYYKIITRPMDLQT 71
Query: 1419 LRARFQNRFYRRITSAQFDVRYLAANAEKFNEPHSNIVKYARIITDLLLRIIKE 1472
LR + R Y + + + N+ +N P ++ + ++ + DL +KE
Sbjct: 72 LRENVRKRLYPSREEFREHLELIVKNSATYNGPKHSLTQISQSMLDLCDEKLKE 125
|
| >d1eqfa1 a.29.2.1 (A:1359-1497) TAFII250 double bromodomain module {Human (Homo sapiens) [TaxId: 9606]} Length = 139 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Bromodomain-like superfamily: Bromodomain family: Bromodomain domain: TAFII250 double bromodomain module species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.7 bits (100), Expect = 7e-05
Identities = 13/57 (22%), Positives = 26/57 (45%)
Query: 1 LTTLRARFQNRFYRRITSAQFDVRYLAANAEKFNEPHSNIVKYARIITDLLLRIIKE 57
L TLR + R Y + + + N+ +N P ++ + ++ + DL +KE
Sbjct: 69 LQTLRENVRKRLYPSREEFREHLELIVKNSATYNGPKHSLTQISQSMLDLCDEKLKE 125
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 96.4 bits (238), Expect = 1e-21
Identities = 28/318 (8%), Positives = 77/318 (24%), Gaps = 17/318 (5%)
Query: 490 VIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQT 549
V D LI R + + TL + + I N + G +++W++
Sbjct: 24 QPVPFPPDALIGPGIPRHARQINTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISH 81
Query: 550 LAPISVL-----VGHQGIITGVNFCP---LEVNGFNYLASTSTDGCIGFWKYKLDIDISK 601
S + + I P + G + D + K ++ S
Sbjct: 82 PGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSA 141
Query: 602 TVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEE 661
+ + + + + S G
Sbjct: 142 PACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTG 201
Query: 662 HSDKVDSIQWSHSHLRFVSGSRDGT----ALIWYYKCSQWRFIRLDMNTCLPHTKETSDE 717
D + + ++ + +
Sbjct: 202 GLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQL 261
Query: 718 TNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDS 777
+ V + + +W ++ + + W G + ++ V + D
Sbjct: 262 HLHESCVLSLKFAYCGKWFVST-GKDNLLNAWRTPYGASIFQS-KESSSVLSCDISV-DD 318
Query: 778 RVLLSAGHDGLIIIWDIL 795
+ +++ D +++++
Sbjct: 319 KYIVTGSGDKKATVYEVI 336
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 69.1 bits (167), Expect = 1e-12
Identities = 41/310 (13%), Positives = 86/310 (27%), Gaps = 55/310 (17%)
Query: 473 LGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLR-----GCSGEISDIAID 527
L H V V + TG +K+W + + I +
Sbjct: 48 LNHGEVVCAVTISNPTRHVYTGGKGC-VKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLL 106
Query: 528 NRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGC 587
L G T+ IW+L P + + + +
Sbjct: 107 PDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIA 166
Query: 588 IGFWKYKLDI---------------------------DISKTVFHEPVMFNERIRPGNAH 620
+ + + D + + + +
Sbjct: 167 VWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQ 226
Query: 621 ILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVS 680
I + P G +LA G +V V ++ D ++ H V S+++++ FVS
Sbjct: 227 IFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY----QLHLHESCVLSLKFAYCGKWFVS 282
Query: 681 GSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAI 740
+D W R + +KE+S V D++++T
Sbjct: 283 TGKDNLLNAW----------RTPYGASIFQSKESSS-------VLSCDISVDDKYIVTG- 324
Query: 741 NFNFQIKIWD 750
+ + + +++
Sbjct: 325 SGDKKATVYE 334
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 62.1 bits (149), Expect = 2e-10
Identities = 18/87 (20%), Positives = 31/87 (35%), Gaps = 1/87 (1%)
Query: 461 HKYSNLRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGE 520
+ N Y H S V + F G+ V+ D L+ WR G + S
Sbjct: 250 VLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSS 308
Query: 521 ISDIAIDNRNILLAAGTVDKTIRIWNL 547
+ I + + G+ DK ++ +
Sbjct: 309 VLSCDISVDDKYIVTGSGDKKATVYEV 335
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.0 bits (133), Expect = 2e-08
Identities = 22/240 (9%), Positives = 55/240 (22%), Gaps = 20/240 (8%)
Query: 621 ILCSSFSPGGLFLATGSGDHHVRVYKMDGVD--SPLGILEVEEHSDKVDSIQWSHSHLRF 678
+ + S + TG V+V+ + SP+ L+ + + S +
Sbjct: 54 VCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTL 112
Query: 679 VSGSRDGTALIWYYKCSQWRFIR-----------------LDMNTCLPHTKETSDETNKK 721
+ G T IW R + +
Sbjct: 113 IVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHN 172
Query: 722 IKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLL 781
+ +D I+ + + + ++ + +
Sbjct: 173 QTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGY 232
Query: 782 SAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVY 841
+ L + + + + E + K++ G T L +
Sbjct: 233 CPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAW 292
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 96.5 bits (238), Expect = 1e-21
Identities = 56/354 (15%), Positives = 123/354 (34%), Gaps = 44/354 (12%)
Query: 474 GHLSAVF-CVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNIL 532
GH+++V C+ F+ ++TGADD +I+++ + + K L L G G + + + IL
Sbjct: 10 GHMTSVITCLQFE--DNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGIL 67
Query: 533 LAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWK 592
++ T + T +E Y+ + S D + WK
Sbjct: 68 VSGSTDRTVRVWDIKKGCCTHVF---EGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWK 124
Query: 593 YKLDIDISKT--------VFHEPVMFNERIRPGNAHIL-CSSFSPGGLFLATGSGDHHVR 643
+ + VFH P + H+ + S G + +GS D+ +
Sbjct: 125 LPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLI 184
Query: 644 VYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLD 703
V+ + + + H+D++ S + H R +S S D T IW + + +
Sbjct: 185 VWDVAQMKCL---YILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQG 241
Query: 704 MNT----------------------CLPHTKETSDETNKKIKVTMVAWDASDRWVITAIN 741
+ + ++ + ++ + +
Sbjct: 242 HTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS 301
Query: 742 FNFQIKIWDAFNGDLVQV-LKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDI 794
N Q I++ +G LV + ++++ + ++ + DG + +
Sbjct: 302 EN-QFNIYNLRSGKLVHANILKDADQIWSVNFKG--KTLVAAVEKDGQSFLEIL 352
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 53.0 bits (125), Expect = 2e-07
Identities = 14/92 (15%), Positives = 32/92 (34%), Gaps = 2/92 (2%)
Query: 457 MISSHKYSNLRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLL-ATLR 515
S + H + + + + + I+ + ++ R GKL+ A +
Sbjct: 262 DGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANIL 321
Query: 516 GCSGEISDIAIDNRNILLAAGTVDKTIRIWNL 547
+ +I + + L+AA D + L
Sbjct: 322 KDADQIWSVNFKGKT-LVAAVEKDGQSFLEIL 352
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.7 bits (101), Expect = 2e-04
Identities = 13/69 (18%), Positives = 28/69 (40%), Gaps = 9/69 (13%)
Query: 759 VLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALF 818
L+GH V F+ +++ D +I ++D ++ K H +G ++
Sbjct: 7 TLRGHMTSVITCLQ--FEDNYVITGADDKMIRVYDSINKKFLLQLSGH-------DGGVW 57
Query: 819 DGKWSPDGT 827
K++ G
Sbjct: 58 ALKYAHGGI 66
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.3 bits (92), Expect = 0.002
Identities = 10/138 (7%), Positives = 34/138 (24%), Gaps = 18/138 (13%)
Query: 662 HSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKK 721
H V + ++G+ D ++ +F+ H
Sbjct: 11 HMTSVITC-LQFEDNYVITGADDKMIRVY--DSINKKFLL----QLSGHDGG-------- 55
Query: 722 IKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLL 781
V + + A +++ ++ + + + ++
Sbjct: 56 --VWALKY-AHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIV 112
Query: 782 SAGHDGLIIIWDILSSKQ 799
+ D + +W +
Sbjct: 113 TGSRDNTLHVWKLPKESS 130
|
| >d1e6ia_ a.29.2.1 (A:) GCN5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 111 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Bromodomain-like superfamily: Bromodomain family: Bromodomain domain: GCN5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 88.8 bits (220), Expect = 2e-21
Identities = 30/101 (29%), Positives = 50/101 (49%), Gaps = 1/101 (0%)
Query: 118 WKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPID 177
+ +L L + PF +PV+K + PDY + PMDL T+ +L + Y+ D
Sbjct: 4 HDAAIQNILTELQNHAAAWPFLQPVNKEEVPDYYDFIKEPMDLSTMEIKLESNKYQKMED 63
Query: 178 FVKDVKRVFHNSRNYNQNKRSKIYIMTTRLSEFAEEHLRRL 218
F+ D + VF+N R YN + + Y RL +F ++ +
Sbjct: 64 FIYDARLVFNNCRMYN-GENTSYYKYANRLEKFFNNKVKEI 103
|
| >d1e6ia_ a.29.2.1 (A:) GCN5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 111 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Bromodomain-like superfamily: Bromodomain family: Bromodomain domain: GCN5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 88.8 bits (220), Expect = 2e-21
Identities = 30/101 (29%), Positives = 50/101 (49%), Gaps = 1/101 (0%)
Query: 1533 WKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPID 1592
+ +L L + PF +PV+K + PDY + PMDL T+ +L + Y+ D
Sbjct: 4 HDAAIQNILTELQNHAAAWPFLQPVNKEEVPDYYDFIKEPMDLSTMEIKLESNKYQKMED 63
Query: 1593 FVKDVKRVFHNSRNYNQNKRSKIYIMTTRLSEFAEEHLRRL 1633
F+ D + VF+N R YN + + Y RL +F ++ +
Sbjct: 64 FIYDARLVFNNCRMYN-GENTSYYKYANRLEKFFNNKVKEI 103
|
| >d1e6ia_ a.29.2.1 (A:) GCN5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 111 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Bromodomain-like superfamily: Bromodomain family: Bromodomain domain: GCN5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 68.0 bits (166), Expect = 4e-14
Identities = 24/91 (26%), Positives = 47/91 (51%)
Query: 1382 LEEVMGLSVAEPFLVPVDISQYPAYAYVVEYPVDLTTLRARFQNRFYRRITSAQFDVRYL 1441
L E+ + A PFL PV+ + P Y ++ P+DL+T+ + ++ Y+++ +D R +
Sbjct: 12 LTELQNHAAAWPFLQPVNKEEVPDYYDFIKEPMDLSTMEIKLESNKYQKMEDFIYDARLV 71
Query: 1442 AANAEKFNEPHSNIVKYARIITDLLLRIIKE 1472
N +N +++ KYA + +KE
Sbjct: 72 FNNCRMYNGENTSYYKYANRLEKFFNNKVKE 102
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 93.8 bits (231), Expect = 3e-21
Identities = 57/338 (16%), Positives = 106/338 (31%), Gaps = 57/338 (16%)
Query: 465 NLRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDI 524
+L++ + V+C+ +D + IV+G D IK+W + L G +G + +
Sbjct: 4 SLQRIHCRSETSKGVYCLQYD--DQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCL 61
Query: 525 AIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTST 584
D + V + TG L + L
Sbjct: 62 QYD-----------------ERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFN 104
Query: 585 DGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRV 644
+G + I + + + A + F + + SGD ++V
Sbjct: 105 NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIV--SASGDRTIKV 162
Query: 645 YKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDM 704
+ ++ + K + VSGS D T +W +C +
Sbjct: 163 W-----NTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGH 217
Query: 705 NTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGD--------- 755
+ D I + ++ +IK+WD
Sbjct: 218 EELVR-------------------CIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTL 258
Query: 756 LVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWD 793
++ L H+ VF L+ FD ++S+ HD I+IWD
Sbjct: 259 CLRTLVEHSGRVFRLQ---FDEFQIVSSSHDDTILIWD 293
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.9 bits (143), Expect = 8e-10
Identities = 28/209 (13%), Positives = 60/209 (28%), Gaps = 30/209 (14%)
Query: 624 SSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSR 683
+ +G D+ ++++ ++ + H+ V +Q+ + S
Sbjct: 19 YCLQYDDQKIVSGLRDNTIKIWD---KNTLECKRILTGHTGSVLCLQYDERVIITGSSDS 75
Query: 684 DGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDAS----------- 732
I T K + ++ WD +
Sbjct: 76 TVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDR-SIAVWDMASPTDITLRRVL 134
Query: 733 ------------DRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVL 780
D I + + + IK+W+ + V+ L GH + + R++
Sbjct: 135 VGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIAC---LQYRDRLV 191
Query: 781 LSAGHDGLIIIWDILSSKQRGYKWFHNIV 809
+S D I +WDI H +
Sbjct: 192 VSGSSDNTIRLWDIECGACLRVLEGHEEL 220
|
| >d3d7ca1 a.29.2.1 (A:731-832) GCN5 {Human (Homo sapiens) [TaxId: 9606]} Length = 102 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Bromodomain-like superfamily: Bromodomain family: Bromodomain domain: GCN5 species: Human (Homo sapiens) [TaxId: 9606]
Score = 86.6 bits (214), Expect = 9e-21
Identities = 31/99 (31%), Positives = 49/99 (49%), Gaps = 1/99 (1%)
Query: 118 WKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPID 177
+ +L + P + PF +PV K + PDY +++ P+DL T+ E LR Y +
Sbjct: 3 LYTTLKNLLAQIKSHPSAWPFMEPVKKSEAPDYYEVIRFPIDLKTMTERLRSRYYVTRKL 62
Query: 178 FVKDVKRVFHNSRNYNQNKRSKIYIMTTRLSEFAEEHLR 216
FV D++RV N R YN S+ + L +F L+
Sbjct: 63 FVADLQRVIANCREYN-PPDSEYCRCASALEKFFYFKLK 100
|
| >d3d7ca1 a.29.2.1 (A:731-832) GCN5 {Human (Homo sapiens) [TaxId: 9606]} Length = 102 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Bromodomain-like superfamily: Bromodomain family: Bromodomain domain: GCN5 species: Human (Homo sapiens) [TaxId: 9606]
Score = 86.6 bits (214), Expect = 9e-21
Identities = 31/99 (31%), Positives = 49/99 (49%), Gaps = 1/99 (1%)
Query: 1533 WKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPID 1592
+ +L + P + PF +PV K + PDY +++ P+DL T+ E LR Y +
Sbjct: 3 LYTTLKNLLAQIKSHPSAWPFMEPVKKSEAPDYYEVIRFPIDLKTMTERLRSRYYVTRKL 62
Query: 1593 FVKDVKRVFHNSRNYNQNKRSKIYIMTTRLSEFAEEHLR 1631
FV D++RV N R YN S+ + L +F L+
Sbjct: 63 FVADLQRVIANCREYN-PPDSEYCRCASALEKFFYFKLK 100
|
| >d3d7ca1 a.29.2.1 (A:731-832) GCN5 {Human (Homo sapiens) [TaxId: 9606]} Length = 102 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Bromodomain-like superfamily: Bromodomain family: Bromodomain domain: GCN5 species: Human (Homo sapiens) [TaxId: 9606]
Score = 70.0 bits (171), Expect = 7e-15
Identities = 27/100 (27%), Positives = 48/100 (48%), Gaps = 3/100 (3%)
Query: 1373 ATCEKIITGLEEVMGLSVAEPFLVPVDISQYPAYAYVVEYPVDLTTLRARFQNRFYRRIT 1432
T + + L ++ A PF+ PV S+ P Y V+ +P+DL T+ R ++R+Y
Sbjct: 5 TTLKNL---LAQIKSHPSAWPFMEPVKKSEAPDYYEVIRFPIDLKTMTERLRSRYYVTRK 61
Query: 1433 SAQFDVRYLAANAEKFNEPHSNIVKYARIITDLLLRIIKE 1472
D++ + AN ++N P S + A + +KE
Sbjct: 62 LFVADLQRVIANCREYNPPDSEYCRCASALEKFFYFKLKE 101
|
| >d3d7ca1 a.29.2.1 (A:731-832) GCN5 {Human (Homo sapiens) [TaxId: 9606]} Length = 102 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Bromodomain-like superfamily: Bromodomain family: Bromodomain domain: GCN5 species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.1 bits (96), Expect = 8e-05
Identities = 14/57 (24%), Positives = 26/57 (45%)
Query: 1 LTTLRARFQNRFYRRITSAQFDVRYLAANAEKFNEPHSNIVKYARIITDLLLRIIKE 57
L T+ R ++R+Y D++ + AN ++N P S + A + +KE
Sbjct: 45 LKTMTERLRSRYYVTRKLFVADLQRVIANCREYNPPDSEYCRCASALEKFFYFKLKE 101
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 91.6 bits (225), Expect = 2e-20
Identities = 34/297 (11%), Positives = 86/297 (28%), Gaps = 19/297 (6%)
Query: 507 DGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGV 566
++L T+ G + I+ + ++ L +G+ D I W+ + + H +I +
Sbjct: 2 HDEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSS-----MHQDHSNLIVSL 52
Query: 567 NFCP---LEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILC 623
+ ++ + F + F + ++ + +
Sbjct: 53 DNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGD 112
Query: 624 SSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSR 683
S + V + + + ++ + D + ++S S
Sbjct: 113 IIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISP 172
Query: 684 DGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDA----SDRWVITA 739
T + + L I A + ++
Sbjct: 173 SETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVAT 232
Query: 740 INFNFQIKIWD-AFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDIL 795
+ + I I+ +++ L H + V L L+S+G D I W+++
Sbjct: 233 GSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWET--PSTLVSSGADACIKRWNVV 287
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 52.7 bits (124), Expect = 2e-07
Identities = 13/91 (14%), Positives = 37/91 (40%), Gaps = 2/91 (2%)
Query: 457 MISSHKYSNLRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARD-GKLLATLR 515
+ +S + + + +++ TG+ D I ++ + K++ L
Sbjct: 196 VKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALN 255
Query: 516 GCSGEISDIAIDNRNILLAAGTVDKTIRIWN 546
++++ + + L+++G D I+ WN
Sbjct: 256 AHKDGVNNLLWETPSTLVSSGA-DACIKRWN 285
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.9 bits (109), Expect = 1e-05
Identities = 12/47 (25%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Query: 753 NGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQ 799
+ ++++ + GH + L +P L+S +DG I+ W S Q
Sbjct: 2 HDEVLKTISGHNKGITALTVNP-----LISGSYDGRIMEWSSSSMHQ 43
|
| >d3dwya1 a.29.2.1 (A:1084-1197) CREB-binding protein, CBP {Human (Homo sapiens) [TaxId: 9606]} Length = 114 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Bromodomain-like superfamily: Bromodomain family: Bromodomain domain: CREB-binding protein, CBP species: Human (Homo sapiens) [TaxId: 9606]
Score = 86.2 bits (213), Expect = 2e-20
Identities = 40/108 (37%), Positives = 60/108 (55%), Gaps = 4/108 (3%)
Query: 114 RPFNWKNECREVLETLW-VCPDSEPFRKPVD--KLDHPDYDKIVIAPMDLGTIREELRGD 170
+P + LE L+ P+S PFR+PVD L PDY IV PMDL TI+ +L
Sbjct: 3 KPEELRQALMPTLEALYRQDPESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTG 62
Query: 171 NYESPIDFVKDVKRVFHNSRNYNQNKRSKIYIMTTRLSEFAEEHLRRL 218
Y+ P +V DV +F+N+ YN K S++Y ++L+E E+ + +
Sbjct: 63 QYQEPWQYVDDVWLMFNNAWLYN-RKTSRVYKFCSKLAEVFEQEIDPV 109
|
| >d3dwya1 a.29.2.1 (A:1084-1197) CREB-binding protein, CBP {Human (Homo sapiens) [TaxId: 9606]} Length = 114 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Bromodomain-like superfamily: Bromodomain family: Bromodomain domain: CREB-binding protein, CBP species: Human (Homo sapiens) [TaxId: 9606]
Score = 86.2 bits (213), Expect = 2e-20
Identities = 40/108 (37%), Positives = 60/108 (55%), Gaps = 4/108 (3%)
Query: 1529 RPFNWKNECREVLETLW-VCPDSEPFRKPVD--KLDHPDYDKIVIAPMDLGTIREELRGD 1585
+P + LE L+ P+S PFR+PVD L PDY IV PMDL TI+ +L
Sbjct: 3 KPEELRQALMPTLEALYRQDPESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTG 62
Query: 1586 NYESPIDFVKDVKRVFHNSRNYNQNKRSKIYIMTTRLSEFAEEHLRRL 1633
Y+ P +V DV +F+N+ YN K S++Y ++L+E E+ + +
Sbjct: 63 QYQEPWQYVDDVWLMFNNAWLYN-RKTSRVYKFCSKLAEVFEQEIDPV 109
|
| >d3dwya1 a.29.2.1 (A:1084-1197) CREB-binding protein, CBP {Human (Homo sapiens) [TaxId: 9606]} Length = 114 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Bromodomain-like superfamily: Bromodomain family: Bromodomain domain: CREB-binding protein, CBP species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.4 bits (141), Expect = 1e-10
Identities = 23/104 (22%), Positives = 45/104 (43%), Gaps = 3/104 (2%)
Query: 1372 DATCEKIITGLEEVMGL-SVAEPFLVPVDIS--QYPAYAYVVEYPVDLTTLRARFQNRFY 1428
+ + ++ LE + + PF PVD P Y +V+ P+DL+T++ + Y
Sbjct: 5 EELRQALMPTLEALYRQDPESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQY 64
Query: 1429 RRITSAQFDVRYLAANAEKFNEPHSNIVKYARIITDLLLRIIKE 1472
+ DV + NA +N S + K+ + ++ + I
Sbjct: 65 QEPWQYVDDVWLMFNNAWLYNRKTSRVYKFCSKLAEVFEQEIDP 108
|
| >d3dwya1 a.29.2.1 (A:1084-1197) CREB-binding protein, CBP {Human (Homo sapiens) [TaxId: 9606]} Length = 114 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Bromodomain-like superfamily: Bromodomain family: Bromodomain domain: CREB-binding protein, CBP species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.6 bits (87), Expect = 0.002
Identities = 11/57 (19%), Positives = 24/57 (42%)
Query: 1 LTTLRARFQNRFYRRITSAQFDVRYLAANAEKFNEPHSNIVKYARIITDLLLRIIKE 57
L+T++ + Y+ DV + NA +N S + K+ + ++ + I
Sbjct: 52 LSTIKRKLDTGQYQEPWQYVDDVWLMFNNAWLYNRKTSRVYKFCSKLAEVFEQEIDP 108
|
| >d1eqfa2 a.29.2.1 (A:1498-1625) TAFII250 double bromodomain module {Human (Homo sapiens) [TaxId: 9606]} Length = 128 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Bromodomain-like superfamily: Bromodomain family: Bromodomain domain: TAFII250 double bromodomain module species: Human (Homo sapiens) [TaxId: 9606]
Score = 86.2 bits (213), Expect = 3e-20
Identities = 36/123 (29%), Positives = 52/123 (42%), Gaps = 13/123 (10%)
Query: 125 VLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKR 184
V + + PDS PF PV+K PDY K+++ PMDL TIR+ + Y+S F+ DV
Sbjct: 18 VTQKMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNL 77
Query: 185 VFHNSRNYNQNKRSKIYIMTTRLSEFAEEHLRRLTVRWNSHKNKENKKDSKRGEKKIKRM 244
+ NS YN S+ + + L E + + EK I
Sbjct: 78 ILANSVKYN-GPESQYTKTAQEIVNVCYQTL------------TEYDEHLTQLEKDICTA 124
Query: 245 KRR 247
K
Sbjct: 125 KEA 127
|
| >d1eqfa2 a.29.2.1 (A:1498-1625) TAFII250 double bromodomain module {Human (Homo sapiens) [TaxId: 9606]} Length = 128 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Bromodomain-like superfamily: Bromodomain family: Bromodomain domain: TAFII250 double bromodomain module species: Human (Homo sapiens) [TaxId: 9606]
Score = 86.2 bits (213), Expect = 3e-20
Identities = 36/123 (29%), Positives = 52/123 (42%), Gaps = 13/123 (10%)
Query: 1540 VLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKR 1599
V + + PDS PF PV+K PDY K+++ PMDL TIR+ + Y+S F+ DV
Sbjct: 18 VTQKMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNL 77
Query: 1600 VFHNSRNYNQNKRSKIYIMTTRLSEFAEEHLRRLTVRWNSHKNKENKKDSKRGEKKIKRM 1659
+ NS YN S+ + + L E + + EK I
Sbjct: 78 ILANSVKYN-GPESQYTKTAQEIVNVCYQTL------------TEYDEHLTQLEKDICTA 124
Query: 1660 KRR 1662
K
Sbjct: 125 KEA 127
|
| >d1eqfa2 a.29.2.1 (A:1498-1625) TAFII250 double bromodomain module {Human (Homo sapiens) [TaxId: 9606]} Length = 128 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Bromodomain-like superfamily: Bromodomain family: Bromodomain domain: TAFII250 double bromodomain module species: Human (Homo sapiens) [TaxId: 9606]
Score = 75.0 bits (184), Expect = 2e-16
Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 2/105 (1%)
Query: 1370 DRDATCEKIITGL--EEVMGLSVAEPFLVPVDISQYPAYAYVVEYPVDLTTLRARFQNRF 1427
D I+ + +++M + + PF PV+ P Y V+ P+DL T+R
Sbjct: 5 DDQVAFSFILDNIVTQKMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHK 64
Query: 1428 YRRITSAQFDVRYLAANAEKFNEPHSNIVKYARIITDLLLRIIKE 1472
Y+ S DV + AN+ K+N P S K A+ I ++ + + E
Sbjct: 65 YQSRESFLDDVNLILANSVKYNGPESQYTKTAQEIVNVCYQTLTE 109
|
| >d1eqfa2 a.29.2.1 (A:1498-1625) TAFII250 double bromodomain module {Human (Homo sapiens) [TaxId: 9606]} Length = 128 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Bromodomain-like superfamily: Bromodomain family: Bromodomain domain: TAFII250 double bromodomain module species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.5 bits (97), Expect = 1e-04
Identities = 17/57 (29%), Positives = 27/57 (47%)
Query: 1 LTTLRARFQNRFYRRITSAQFDVRYLAANAEKFNEPHSNIVKYARIITDLLLRIIKE 57
L T+R Y+ S DV + AN+ K+N P S K A+ I ++ + + E
Sbjct: 53 LETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPESQYTKTAQEIVNVCYQTLTE 109
|
| >d1wuma1 a.29.2.1 (A:715-832) P300/CAF histone acetyltransferase bromodomain {Human (Homo sapiens) [TaxId: 9606]} Length = 118 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Bromodomain-like superfamily: Bromodomain family: Bromodomain domain: P300/CAF histone acetyltransferase bromodomain species: Human (Homo sapiens) [TaxId: 9606]
Score = 85.1 bits (210), Expect = 5e-20
Identities = 30/109 (27%), Positives = 54/109 (49%), Gaps = 1/109 (0%)
Query: 110 KKLKRPFNWKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRG 169
K+ + P + + +L+ + + PF +PV + + P Y +++ PMDL T+ E L+
Sbjct: 6 KEPRDPDQLYSTLKSILQQVKSHQSAWPFMEPVKRTEAPGYYEVIRFPMDLKTMSERLKN 65
Query: 170 DNYESPIDFVKDVKRVFHNSRNYNQNKRSKIYIMTTRLSEFAEEHLRRL 218
Y S F+ D++RVF N + YN S+ Y L +F ++
Sbjct: 66 RYYVSKKLFMADLQRVFTNCKEYN-PPESEYYKCANILEKFFFSKIKEA 113
|
| >d1wuma1 a.29.2.1 (A:715-832) P300/CAF histone acetyltransferase bromodomain {Human (Homo sapiens) [TaxId: 9606]} Length = 118 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Bromodomain-like superfamily: Bromodomain family: Bromodomain domain: P300/CAF histone acetyltransferase bromodomain species: Human (Homo sapiens) [TaxId: 9606]
Score = 85.1 bits (210), Expect = 5e-20
Identities = 30/109 (27%), Positives = 54/109 (49%), Gaps = 1/109 (0%)
Query: 1525 KKLKRPFNWKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRG 1584
K+ + P + + +L+ + + PF +PV + + P Y +++ PMDL T+ E L+
Sbjct: 6 KEPRDPDQLYSTLKSILQQVKSHQSAWPFMEPVKRTEAPGYYEVIRFPMDLKTMSERLKN 65
Query: 1585 DNYESPIDFVKDVKRVFHNSRNYNQNKRSKIYIMTTRLSEFAEEHLRRL 1633
Y S F+ D++RVF N + YN S+ Y L +F ++
Sbjct: 66 RYYVSKKLFMADLQRVFTNCKEYN-PPESEYYKCANILEKFFFSKIKEA 113
|
| >d1wuma1 a.29.2.1 (A:715-832) P300/CAF histone acetyltransferase bromodomain {Human (Homo sapiens) [TaxId: 9606]} Length = 118 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Bromodomain-like superfamily: Bromodomain family: Bromodomain domain: P300/CAF histone acetyltransferase bromodomain species: Human (Homo sapiens) [TaxId: 9606]
Score = 72.0 bits (176), Expect = 2e-15
Identities = 32/108 (29%), Positives = 53/108 (49%)
Query: 1370 DRDATCEKIITGLEEVMGLSVAEPFLVPVDISQYPAYAYVVEYPVDLTTLRARFQNRFYR 1429
D D + + L++V A PF+ PV ++ P Y V+ +P+DL T+ R +NR+Y
Sbjct: 10 DPDQLYSTLKSILQQVKSHQSAWPFMEPVKRTEAPGYYEVIRFPMDLKTMSERLKNRYYV 69
Query: 1430 RITSAQFDVRYLAANAEKFNEPHSNIVKYARIITDLLLRIIKEPNPVD 1477
D++ + N +++N P S K A I+ IKE +D
Sbjct: 70 SKKLFMADLQRVFTNCKEYNPPESEYYKCANILEKFFFSKIKEAGLID 117
|
| >d1wuma1 a.29.2.1 (A:715-832) P300/CAF histone acetyltransferase bromodomain {Human (Homo sapiens) [TaxId: 9606]} Length = 118 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Bromodomain-like superfamily: Bromodomain family: Bromodomain domain: P300/CAF histone acetyltransferase bromodomain species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.7 bits (100), Expect = 4e-05
Identities = 18/62 (29%), Positives = 29/62 (46%)
Query: 1 LTTLRARFQNRFYRRITSAQFDVRYLAANAEKFNEPHSNIVKYARIITDLLLRIIKEPNP 60
L T+ R +NR+Y D++ + N +++N P S K A I+ IKE
Sbjct: 56 LKTMSERLKNRYYVSKKLFMADLQRVFTNCKEYNPPESEYYKCANILEKFFFSKIKEAGL 115
Query: 61 VD 62
+D
Sbjct: 116 ID 117
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 88.9 bits (218), Expect = 2e-19
Identities = 40/299 (13%), Positives = 78/299 (26%), Gaps = 15/299 (5%)
Query: 508 GKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLV-GHQGIITGV 566
G + G + I+ ++ L + + I W++ T V H +ITG+
Sbjct: 2 GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGI 61
Query: 567 NFCPLEVNGFN--------YLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGN 618
A S KL +
Sbjct: 62 KTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKH 121
Query: 619 AHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRF 678
I S + V + V + S S + H
Sbjct: 122 IAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAE 181
Query: 679 VSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVIT 738
++ + Q R + T+ T KV V+W + + T
Sbjct: 182 ITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLAT 241
Query: 739 AINFNFQIKIWDAFNGDLVQVLK---GHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDI 794
+ + + +W+ ++ + V + + ++SAG D I W++
Sbjct: 242 G-SLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWL--NETTIVSAGQDSNIKFWNV 297
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 53.1 bits (125), Expect = 1e-07
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 754 GDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQ 799
G + QV GH + L S D + L SA +G I WDI +
Sbjct: 2 GSIDQVRYGHNKAITALSSSA-DGKTLFSADAEGHINSWDISTGIS 46
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 43.4 bits (100), Expect = 2e-04
Identities = 11/60 (18%), Positives = 24/60 (40%), Gaps = 4/60 (6%)
Query: 491 IVTGADDLLIKLWRARDGKLLATLR---GCSGEISDIAIDNRNILLAAGTVDKTIRIWNL 547
+ TG+ D + +W + ++ + N +++AG D I+ WN+
Sbjct: 239 LATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQ-DSNIKFWNV 297
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 89.1 bits (219), Expect = 5e-19
Identities = 41/358 (11%), Positives = 96/358 (26%), Gaps = 33/358 (9%)
Query: 475 HLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGK--LLATLRGCSGEISDIAIDNRNIL 532
+ + C ++K I ++ + ++ K + L+ +G+++ + +
Sbjct: 6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNR 65
Query: 533 LAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWK 592
+ D+ +W L+ LV + + S S I +++
Sbjct: 66 IVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFE 125
Query: 593 YKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGL-----FLATGSGDHHVRVYKM 647
+ D + K + + +L ++ S +
Sbjct: 126 QENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWG 185
Query: 648 DGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTC 707
+ + E V + +S + R S D T +
Sbjct: 186 SKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLP 245
Query: 708 LPHTKETSDET----------------NKKIKVTMVAW-DASDRWVITAINFNFQIKIWD 750
L ++ + + K++ D + + + + D
Sbjct: 246 LLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLD 305
Query: 751 AF------NGDLVQVLKGHTNEVF---VLESHPFDSRVLLSAGHDGLIIIWDILSSKQ 799
+ H N V VL + G DG + IWD+ S +
Sbjct: 306 KKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLES 363
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 84.9 bits (208), Expect = 1e-17
Identities = 49/284 (17%), Positives = 92/284 (32%), Gaps = 20/284 (7%)
Query: 521 ISDIAIDNRNILLAAGTVDKTIRIWNLQT--LAPISVLVGHQGIITGVNFCPLEVNGFNY 578
IS A + +A + + I+ + L H G +TGV++ P + N
Sbjct: 10 ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAP---DS-NR 65
Query: 579 LASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSG 638
+ + TD W K V +R + S
Sbjct: 66 IVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSR-------- 117
Query: 639 DHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIW--YYKCSQ 696
Y D + + V S+ W + + +GS D I+ Y K +
Sbjct: 118 -VISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVE 176
Query: 697 WRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDL 756
R + +P + + ++ V V + A+ V + + + + DA
Sbjct: 177 ERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDS-TVCLADADKKMA 235
Query: 757 VQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQR 800
V L T + + S L++AGHD +++ S+ +
Sbjct: 236 VATLASETLPLLAVTFITESS--LVAAGHDCFPVLFTYDSAAGK 277
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 78.7 bits (192), Expect = 1e-15
Identities = 36/246 (14%), Positives = 71/246 (28%), Gaps = 2/246 (0%)
Query: 621 ILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVS 680
I C +++ +A +H V +Y+ G + + + E++EH+ +V + W+ R V+
Sbjct: 10 ISCHAWNKDRTQIAICPNNHEVHIYEKSG-NKWVQVHELKEHNGQVTGVDWAPDSNRIVT 68
Query: 681 GSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAI 740
D A +W K W+ + + KK V +
Sbjct: 69 CGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRV-ISICYFEQE 127
Query: 741 NFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQR 800
N + K V L H N V + + SA + +
Sbjct: 128 NDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSK 187
Query: 801 GYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGGFKRPQNIPRELFFHT 860
G + +S +G+ A + + + E
Sbjct: 188 MPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLL 247
Query: 861 DYRTLN 866
+
Sbjct: 248 AVTFIT 253
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 49.5 bits (116), Expect = 3e-06
Identities = 28/225 (12%), Positives = 56/225 (24%), Gaps = 22/225 (9%)
Query: 437 HNTVNVLRSREYSGPLSRSLMISSHKYSNLRQHYVNLGHLSAVFCVLFDKLGEVIVTGAD 496
+ + + K + + V V F G + +
Sbjct: 162 DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSH 221
Query: 497 DLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVL 556
D + L A +ATL + + + + L+AAG D ++ + A
Sbjct: 222 DSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGH-DCFPVLFTYDSAAGKLSF 280
Query: 557 VGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRP 616
G + + G + H+
Sbjct: 281 GGRLDVPKQSSQR-----GLTARERFQNLDKKASSEGSAAAGAGLDSLHK---------- 325
Query: 617 GNAHILCSSFSPGG----LFLATGSGDHHVRVYKMDGVDSPLGIL 657
+ S GG T D + ++ + ++S L L
Sbjct: 326 --NSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESALKDL 368
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 83.7 bits (205), Expect = 2e-17
Identities = 27/348 (7%), Positives = 83/348 (23%), Gaps = 24/348 (6%)
Query: 489 EVIVTGADDLLIKLWRARDGKLLATLRGCS--GEISDIAID-NRNILLAAGTVDKTIRIW 545
+ I+ A + + + + + I A +++
Sbjct: 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKI 61
Query: 546 NLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFH 605
+L T + + + ++ + + ++
Sbjct: 62 DLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYD 121
Query: 606 EPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDK 665
+ + I +++ G L D HV + +
Sbjct: 122 AETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDK------PIQSW 175
Query: 666 VDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKV- 724
L + + + ++ D ET +
Sbjct: 176 EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMRE 235
Query: 725 -----TMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRV 779
A + A ++ +D ++ + + + + D
Sbjct: 236 VRIMDVFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRV-PLPHSYYSVNVST-DGST 293
Query: 780 LLSAGHDGLIIIWDILSSKQRGYKWFHNI-VEGQGEGALFDGK-WSPD 825
+ G G + +D + +++G + + G +L + ++ D
Sbjct: 294 VWLGGALGDLAAYDAETLEKKG-----QVDLPGNASMSLASVRLFTRD 336
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 45.2 bits (105), Expect = 6e-05
Identities = 6/103 (5%), Positives = 23/103 (22%), Gaps = 7/103 (6%)
Query: 474 GHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILL 533
F + +++ + + + + + +
Sbjct: 238 IMDVFYFSTAVNPAKTRAFG--AYNVLESFDLEKNASIKRV-PLPHSYYSVNVSTDGSTV 294
Query: 534 AAGTVDKTIRIWNLQTLAPISVLV----GHQGIITGVNFCPLE 572
G + ++ +TL + + + F E
Sbjct: 295 WLGGALGDLAAYDAETLEKKGQVDLPGNASMSLASVRLFTRDE 337
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 81.5 bits (199), Expect = 7e-17
Identities = 35/309 (11%), Positives = 69/309 (22%), Gaps = 30/309 (9%)
Query: 510 LLATL-RGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNF 568
L +L R G + + ++ + +L + H T
Sbjct: 8 LFPSLPRTARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKT 66
Query: 569 CPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKT-----------------------VFH 605
P Y AS G + W I KT V
Sbjct: 67 SP----SGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGE 122
Query: 606 EPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDK 665
F + + D+ + I E K
Sbjct: 123 GRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFK 182
Query: 666 VDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVT 725
+ + + + +D ++ V
Sbjct: 183 STFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVF 242
Query: 726 MVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGH 785
+ W + +A + + IKIW+ + + + T + + L+S
Sbjct: 243 GLTWSPDGTKIASA-SADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISA 301
Query: 786 DGLIIIWDI 794
+G I +
Sbjct: 302 NGFINFVNP 310
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 52.6 bits (124), Expect = 2e-07
Identities = 17/89 (19%), Positives = 32/89 (35%), Gaps = 1/89 (1%)
Query: 460 SHKYSNLRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSG 519
+ N+ H +VF + + G I + + D IK+W K+ T+ +
Sbjct: 222 TKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTR 281
Query: 520 -EISDIAIDNRNILLAAGTVDKTIRIWNL 547
E + I L + + + I N
Sbjct: 282 IEDQQLGIIWTKQALVSISANGFINFVNP 310
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 43.0 bits (99), Expect = 3e-04
Identities = 37/289 (12%), Positives = 75/289 (25%), Gaps = 27/289 (9%)
Query: 464 SNLRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDG--KLLATLRGCSGEI 521
+L + H G +G +++W L T+ SG +
Sbjct: 46 GSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPV 105
Query: 522 SDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLAS 581
DI+ D+ + +AA + S + F ++
Sbjct: 106 KDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISG 165
Query: 582 TSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHH 641
+ + F + + V G+ L+
Sbjct: 166 SDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTG 225
Query: 642 VRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIR 701
V + HS V + WS + S S D T IW
Sbjct: 226 VFEDDSL---------KNVAHSGSVFGLTWSPDGTKIASASADKTIKIW----------- 265
Query: 702 LDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWD 750
++ T E + +I+ + + + +++ + N I +
Sbjct: 266 -NVATL---KVEKTIPVGTRIEDQQLGIIWTKQALVSI-SANGFINFVN 309
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 79.2 bits (193), Expect = 5e-16
Identities = 34/314 (10%), Positives = 77/314 (24%), Gaps = 44/314 (14%)
Query: 519 GEISDIAIDNRNILLAAGTVDKT-IRIWNL--QTLAPISVLVGHQG-IITGVNFCPLEVN 574
+ ++ D +A +R + + P+ GH ++T V F P++
Sbjct: 18 NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIK-G 76
Query: 575 GFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLA 634
YL S G + W + D + V + I S+ G L
Sbjct: 77 S-QYLCSGDESGKVIVWGWTFDKES----NSVEVNVKSEFQVLAGPISDISWDFEGRRLC 131
Query: 635 TGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKC 694
+ +R ++ DG+ + +
Sbjct: 132 VVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPP 191
Query: 695 SQWRFIRLDM-------NTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQ-- 745
++ + +D + I + +
Sbjct: 192 FKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPV 251
Query: 746 -----------------------IKIWDAFNGDLVQVLKGHTNEVFVLES--HPFDSRVL 780
I++WD VQ ++ + + +
Sbjct: 252 QGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRI 311
Query: 781 LSAGHDGLIIIWDI 794
+S DG + +++
Sbjct: 312 ISLSLDGTLNFYEL 325
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 53.8 bits (127), Expect = 9e-08
Identities = 9/63 (14%), Positives = 23/63 (36%), Gaps = 3/63 (4%)
Query: 488 GEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAID---NRNILLAAGTVDKTIRI 544
+ T D I++W K + ++ + + N + + ++D T+
Sbjct: 263 SQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNF 322
Query: 545 WNL 547
+ L
Sbjct: 323 YEL 325
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 52.2 bits (123), Expect = 3e-07
Identities = 26/194 (13%), Positives = 56/194 (28%), Gaps = 12/194 (6%)
Query: 618 NAHILCSSFSPGGLFLATGSGDH-HVRVYKMDGVDSPLGILEVEEHSDKVDSIQWS--HS 674
S+ P +A G VR P + S V ++++S
Sbjct: 17 RNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKG 76
Query: 675 HLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDA-SD 733
SG G +I + +++N ++ ++WD
Sbjct: 77 SQYLCSGDESGK-VIVWGWTFDKESNSVEVNVKSEFQVLAGP-------ISDISWDFEGR 128
Query: 734 RWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWD 793
R + + +G+ + + GH+ + ++ G DG ++ +
Sbjct: 129 RLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQ 188
Query: 794 ILSSKQRGYKWFHN 807
K H+
Sbjct: 189 GPPFKFSASDRTHH 202
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 77.6 bits (189), Expect = 2e-15
Identities = 36/334 (10%), Positives = 75/334 (22%), Gaps = 48/334 (14%)
Query: 509 KLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLV---GHQGIITG 565
+++ + ISDI I LL + D ++ ++ A L+ ++ +
Sbjct: 2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLC 61
Query: 566 VNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNE------------- 612
NF N + + G I +E +
Sbjct: 62 CNFID---NTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAA 118
Query: 613 ------------------------RIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYK-M 647
+ L G + V+ ++
Sbjct: 119 SWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLP 178
Query: 648 DGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTC 707
D I E D + S DG + ++ Q
Sbjct: 179 LCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFD-DQGDDYNSSKRFA 237
Query: 708 LPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEV 767
+ +TN V + + + + I W+ ++ +
Sbjct: 238 FRCHRLNLKDTNLAYPVNSIEFS-PRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDS 296
Query: 768 FVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRG 801
V + +L A D +
Sbjct: 297 VVKIA--CSDNILCLATSDDTFKTNAAIDQTIEL 328
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 61.0 bits (146), Expect = 5e-10
Identities = 34/284 (11%), Positives = 73/284 (25%), Gaps = 47/284 (16%)
Query: 618 NAH---ILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWS-H 673
A I P L S D + VYK D + +L+ + + + +
Sbjct: 8 QAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDN 67
Query: 674 SHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASD 733
+ L+ G+ G L S + L + +K I +
Sbjct: 68 TDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVI 127
Query: 734 RWVITAINFNF--------------------------------QIKIWDAFNGDLVQV-- 759
Q++ + +
Sbjct: 128 DPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTI 187
Query: 760 -LKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDI-------LSSKQRGYKWFHNIVEG 811
G ++ + P + + DG + + SSK+ ++ ++
Sbjct: 188 EESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKD 247
Query: 812 QGEGALFDG-KWSPDGTTCALTDSYGHLLVYGLGGFKRPQNIPR 854
+ ++SP S G + + L K+ +N +
Sbjct: 248 TNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAK 291
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 73.2 bits (178), Expect = 6e-14
Identities = 28/348 (8%), Positives = 77/348 (22%), Gaps = 37/348 (10%)
Query: 524 IAIDNRNILLAAGTVDKTIRIWNLQTLAPISVL-VGHQGIITGVNFCPLEVNGFNYLAST 582
A+ + + + + ++ + + + P +
Sbjct: 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAP---DNRTAYVLN 58
Query: 583 STDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHV 642
+ G I D+ + + + SP G +
Sbjct: 59 NHYGDIYGI------DLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQR 112
Query: 643 RVYKMDGVDSPLGILEVEE-HSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQW---- 697
L + + K + + + DG+ + +
Sbjct: 113 LNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKT 172
Query: 698 -----------RFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQI 746
+ + + ++ + +A D+ + +
Sbjct: 173 GKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGY 232
Query: 747 KIWDAFNGDLVQVLKG-HTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWF 805
D G T F P D + + + +D+ + K
Sbjct: 233 LSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNR--LAKYDL-----KQRKLI 285
Query: 806 HNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGGFKRPQNIP 853
+ + G L ++ L V+ ++ +NI
Sbjct: 286 KAANLDHTYYCVA---FDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIK 330
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 69.4 bits (168), Expect = 1e-12
Identities = 25/327 (7%), Positives = 71/327 (21%), Gaps = 20/327 (6%)
Query: 488 GEVIVTGADDLLIKLWRARDGKLLATLRGCSG-EISDIAID-NRNILLAAGTVDKTIRIW 545
E ++ + + + + + + I
Sbjct: 8 HEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGI 67
Query: 546 NLQTLAPI-SVLVGHQGIITGVNFCPLEVNGF-NYLASTSTDGCIGFWKYKLDIDISKTV 603
+L T + G + ++ + +T Y + +
Sbjct: 68 DLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVF 127
Query: 604 FHEPVMFNERIRPGNAH--ILCSSFSPGGLFLATGSGDHHVRVYKMDGV------DSPLG 655
+ + +R + + G G + + V +
Sbjct: 128 STADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRK 187
Query: 656 ILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRL-DMNTCLPHTKET 714
+ H + +R D+ T HT+E
Sbjct: 188 GYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEF 247
Query: 715 SDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHP 774
+D T D ++ +D L++ + + +
Sbjct: 248 ADLTEL---YFTGLRSPKDPNQ--IYGVLNRLAKYDLKQRKLIKAAN-LDHTYYCVAFDK 301
Query: 775 FDSRVLLSAGHDGLIIIWDILSSKQRG 801
L G + +++ + ++
Sbjct: 302 -KGDKLYLGGTFNDLAVFNPDTLEKVK 327
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 42.8 bits (99), Expect = 3e-04
Identities = 15/97 (15%), Positives = 28/97 (28%), Gaps = 5/97 (5%)
Query: 475 HLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLA 534
F L + G + + + + KL+ +A D + L
Sbjct: 250 LTELYFTGLRSPKDPNQIYGVLNR-LAKYDLKQRKLIKAANLDHT-YYCVAFDKKGDKLY 307
Query: 535 AGTVDKTIRIWNLQTLAPISVL---VGHQGIITGVNF 568
G + ++N TL + + G T F
Sbjct: 308 LGGTFNDLAVFNPDTLEKVKNIKLPGGDMSTTTPQVF 344
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 69.1 bits (167), Expect = 2e-12
Identities = 32/330 (9%), Positives = 72/330 (21%), Gaps = 29/330 (8%)
Query: 471 VNLGHLSAVFCVLFDKLGEVIVTGADD--LLIKLWRARDGKLLATLRGCSGEISDIAIDN 528
+ + + V +V + ++ R GK G + + +D
Sbjct: 37 LKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFE-ENLGNVFAMGVDR 95
Query: 529 RNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCI 588
I +L+T P + + +IT +
Sbjct: 96 NGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYG-------FPL 148
Query: 589 GFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMD 648
+ + + V+ N+H +F L S
Sbjct: 149 KHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRV 208
Query: 649 GVD----SPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDM 704
++ + + + + +G D + M
Sbjct: 209 VLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRM 268
Query: 705 NTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHT 764
L I + V + +D +
Sbjct: 269 IIPLES----------SILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKV----TEVK 314
Query: 765 NEVFVLESHPFDSRVLLSAGHDGLIIIWDI 794
N + L D + ++ DG I + +
Sbjct: 315 NNLTDLRLSA-DRKTVMVRKDDGKIYTFPL 343
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 51.0 bits (120), Expect = 8e-07
Identities = 22/247 (8%), Positives = 51/247 (20%), Gaps = 11/247 (4%)
Query: 616 PGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSH 675
P I + D + EE+ V ++ +
Sbjct: 40 PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGK--AEKFEENLGNVFAMGVDRNG 97
Query: 676 LRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRW 735
V ++ + + +A+ +
Sbjct: 98 KFAVVA-------NDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKH 150
Query: 736 VITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDIL 795
T I ++D + ++++ + DS+ L + L D +
Sbjct: 151 GETDGYVMQAIHVYDMEGRKIFAATTENSHDYA--PAFDADSKNLYYLSYRSLDPSPDRV 208
Query: 796 SSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGGFKRPQNIPRE 855
V G+ K P T + + + R
Sbjct: 209 VLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRM 268
Query: 856 LFFHTDY 862
+
Sbjct: 269 IIPLESS 275
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 50.2 bits (118), Expect = 2e-06
Identities = 17/194 (8%), Positives = 44/194 (22%), Gaps = 28/194 (14%)
Query: 467 RQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKL-------LATLRGCSG 519
R+ + S + FD + + + L + G
Sbjct: 169 RKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPG 228
Query: 520 EISDIAIDNRNILLAAGTVDKT----IRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNG 575
+ + R++ AG D +++ + I +
Sbjct: 229 SPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFA 288
Query: 576 FNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLAT 635
Y G + + D+ K + ++ S +
Sbjct: 289 A-YYQGAPEKGVLLKY----DVKTRKVTEVK------------NNLTDLRLSADRKTVMV 331
Query: 636 GSGDHHVRVYKMDG 649
D + + ++
Sbjct: 332 RKDDGKIYTFPLEK 345
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 46.8 bits (109), Expect = 2e-05
Identities = 6/94 (6%), Positives = 24/94 (25%), Gaps = 4/94 (4%)
Query: 463 YSNLRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEIS 522
+ R + + + + ++ + + K+ ++
Sbjct: 263 PGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKV----TEVKNNLT 318
Query: 523 DIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVL 556
D+ + + D I + L+ +
Sbjct: 319 DLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTV 352
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 61.5 bits (148), Expect = 6e-10
Identities = 42/374 (11%), Positives = 91/374 (24%), Gaps = 23/374 (6%)
Query: 467 RQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAI 526
+ V D VT D I L K++ + + +
Sbjct: 11 WKVLVKPEDRPKKQLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDT-GYAVHISRM 69
Query: 527 DNRNILLAAGTVDKTIRIWNLQT-----LAPISVLVGHQGIITGVNFCPLEVNGFNYLAS 581
L D I + +L +A I + + + + + +A
Sbjct: 70 SASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGY---EDRYTIAG 126
Query: 582 TSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHH 641
+ + + P + F+
Sbjct: 127 AYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGK 186
Query: 642 VRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIR 701
V + D + + + W SH R+ + + + + R
Sbjct: 187 VLLVNYK--DIDNLTVTSIGAAPFLADGGWDSSH-RYFMTAANNSNKVAVIDSKDRRLSA 243
Query: 702 LDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLK 761
L PH ++ + K D + + V L+
Sbjct: 244 LVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYA---WKKVAELQ 300
Query: 762 GHTNEVFVLESHP------FDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEG 815
G +++HP D+ A + ++D+ + + GEG
Sbjct: 301 GQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEG 360
Query: 816 A--LFDGKWSPDGT 827
A + +++ G
Sbjct: 361 AKRVVQPEYNKRGD 374
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 42.6 bits (99), Expect = 4e-04
Identities = 21/137 (15%), Positives = 40/137 (29%), Gaps = 7/137 (5%)
Query: 719 NKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSR 778
+ K + D + + +T + QI + D + +V+V+ V + R
Sbjct: 18 EDRPKKQLNDLDLPNLFSVTLRDAG-QIALVDGDSKKIVKVIDTG-YAVHISRMSA-SGR 74
Query: 779 VLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQG-EGALFDGKWSPDGTTCALTDSYGH 837
LL G D I + D+ + + I G + +
Sbjct: 75 YLLVIGRDARIDMIDLWAKEP---TKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPP 131
Query: 838 LLVYGLGGFKRPQNIPR 854
G P+ I
Sbjct: 132 QFAIMDGETLEPKQIVS 148
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 55.3 bits (131), Expect = 3e-08
Identities = 22/285 (7%), Positives = 65/285 (22%), Gaps = 18/285 (6%)
Query: 490 VIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAID-NRNILLAAGTVDKTIRIWNLQ 548
+ ++ I + K+ AT+ I + + A + I +
Sbjct: 4 AYIANSESDNISVIDVTSNKVTATIPV-GSNPMGAVISPDGTKVYVANAHSNDVSIIDTA 62
Query: 549 TLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPV 608
T I+ + + +G + + + +
Sbjct: 63 TNNVIA----TVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSP 118
Query: 609 MFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVE-----EHS 663
+ G + ++ + T + V +
Sbjct: 119 LGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFD 178
Query: 664 DKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIK 723
S+ + ++ + + + +++ TNK
Sbjct: 179 SMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITA 238
Query: 724 -------VTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLK 761
+A + V A++F + + D + +
Sbjct: 239 RIPVGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMA 283
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Score = 52.1 bits (123), Expect = 3e-07
Identities = 39/314 (12%), Positives = 76/314 (24%), Gaps = 23/314 (7%)
Query: 529 RNILLAAGTVDKTIRIWNLQTLAPISVL--VGHQGIITGVNFCPLEVNGFNYLASTSTDG 586
+ + A + I +WNL +++ V G + + P + +
Sbjct: 3 KQTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSP---DKRYLYVGVRPEF 59
Query: 587 CIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYK 646
+ + I+ + HI S G F+ GS +
Sbjct: 60 RVLAY------RIAPDDGALTFAAESALPGSLTHI---STDHQGQFVFVGSYNAGNVSVT 110
Query: 647 MDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDM-- 704
P+G+++V E D S S + + + + + D
Sbjct: 111 RLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAE 170
Query: 705 -NTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGH 763
T + V S V + + I+ + +
Sbjct: 171 VTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDM--MPENFSD 228
Query: 764 TNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWS 823
T + P + LI ++ + K E Q G
Sbjct: 229 TRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNV----D 284
Query: 824 PDGTTCALTDSYGH 837
G H
Sbjct: 285 HSGKYLIAAGQKSH 298
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 52.5 bits (125), Expect = 3e-07
Identities = 33/221 (14%), Positives = 56/221 (25%), Gaps = 22/221 (9%)
Query: 627 SPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGT 686
LF T + + +L+ V + S S RDG
Sbjct: 29 DLENLFSVTLRDAGQIALIDGST-YEIKTVLDTGYA---VHISRLSASGRYLFVIGRDGK 84
Query: 687 ALIWYYKCSQWRFIRLDMNT-CLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQ 745
+ D+ E + + T D++ I + Q
Sbjct: 85 VNMI------------DLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQ 132
Query: 746 IKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQ---RGY 802
I D + ++ E HP + A H I ++ + + Y
Sbjct: 133 YVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDY 192
Query: 803 KWFHN--IVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVY 841
+N E E L DG + + LV
Sbjct: 193 TDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVV 233
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 40.9 bits (95), Expect = 0.001
Identities = 27/214 (12%), Positives = 57/214 (26%), Gaps = 12/214 (5%)
Query: 626 FSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEV---EEHSDKVDSIQWSH-SHLRFVSG 681
S G +L D V + + + P + E+ E S
Sbjct: 69 LSASGRYLFVIGRDGKVNMIDLW-MKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGA 127
Query: 682 SRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAIN 741
+I + + + I+ +E E +V + I +
Sbjct: 128 YWPPQYVIMDGETLEPKKIQSTRGMT-YDEQEYHPEP----RVAAILASHYRPEFIVNVK 182
Query: 742 FNFQIKIWDAFNGDLVQVLKGHTNEV-FVLESHPFDSRVLLSAGHDGLIIIWDILSSKQR 800
+I + D + + ++ + + +A +++ D K
Sbjct: 183 ETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLV 242
Query: 801 GYKWFHNIVEGQGEGALF-DGKWSPDGTTCALTD 833
+ G GA F + P T + D
Sbjct: 243 AIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGD 276
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 49.8 bits (117), Expect = 2e-06
Identities = 17/88 (19%), Positives = 32/88 (36%), Gaps = 3/88 (3%)
Query: 474 GHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAI--DNRNI 531
H + L + + + A+ G+ LA EI I + D + +
Sbjct: 256 YHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM-GHEIDSINVSQDEKPL 314
Query: 532 LLAAGTVDKTIRIWNLQTLAPISVLVGH 559
L A T DKT+ I + ++ + +
Sbjct: 315 LYALSTGDKTLYIHDAESGEELRSVNQL 342
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 46.5 bits (109), Expect = 2e-05
Identities = 25/261 (9%), Positives = 53/261 (20%), Gaps = 37/261 (14%)
Query: 624 SSFSPGGLFLATGSGDHHVRVYKMDGV-DSPLGILEVEEHSDKVDSIQWSHSH------- 675
+ S + LG + HS
Sbjct: 28 GAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLG----AFLSLAVAGHSGSDFALAS 83
Query: 676 ---LRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTK---ETSDETNKKIKVTMVAW 729
R G R ++ D T LP + + +V ++
Sbjct: 84 TSFARSAKGKRTDYVEVF------------DPVTFLPIADIELPDAPRFSVGPRVHIIGN 131
Query: 730 DASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLI 789
AS ++ + + Q+ K + HP + +
Sbjct: 132 CASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHI----HPGAAATHYLGSCPASL 187
Query: 790 IIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGGFKRP 849
D+ ++ Q + + + G + +L +
Sbjct: 188 AASDLAAAPAAAGIVGAQCTGAQN-CSSQAAQANYPGM--LVWAVASSILQGDIPAAGAT 244
Query: 850 QNIPRELFFHTDYRTLNRPNG 870
+ R G
Sbjct: 245 MKAAIDGNESGRKADNFRSAG 265
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} Length = 365 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Score = 39.4 bits (91), Expect = 0.004
Identities = 25/219 (11%), Positives = 61/219 (27%), Gaps = 24/219 (10%)
Query: 597 IDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFL-ATGSGDHHVRVYKMD--GVDSP 653
+S+T E + N N I F P +L + + + ++ G
Sbjct: 124 FSVSETGKLEKNVQNYE-YQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVEL 182
Query: 654 LGILEVEEHSDKVDSIQWSHSH-LRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTK 712
+G ++ + D + + + I Y + + + P
Sbjct: 183 VGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNR--ICEYVIDPATHMPVYTHHSFPLIP 240
Query: 713 ETSDETNKK-----IKVTMVAWDASDRWVITA---INFNFQIKIWDAFNGDLVQVLK-GH 763
+ + + + + A S +++ + F Q I D + K
Sbjct: 241 PGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLF 300
Query: 764 TNEVFVLESHPFD--------SRVLLSAGHDGLIIIWDI 794
+ H + ++ +G + I+
Sbjct: 301 LSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRW 339
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1915 | |||
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.97 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 99.96 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.96 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.96 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.96 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.96 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.96 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.95 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.95 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.95 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.95 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.95 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.94 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.94 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.92 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.91 | |
| d3d7ca1 | 102 | GCN5 {Human (Homo sapiens) [TaxId: 9606]} | 99.91 | |
| d1e6ia_ | 111 | GCN5 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 99.9 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.89 | |
| d1wuma1 | 118 | P300/CAF histone acetyltransferase bromodomain {Hu | 99.89 | |
| d3dwya1 | 114 | CREB-binding protein, CBP {Human (Homo sapiens) [T | 99.89 | |
| d1eqfa1 | 139 | TAFII250 double bromodomain module {Human (Homo sa | 99.89 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.89 | |
| d3d7ca1 | 102 | GCN5 {Human (Homo sapiens) [TaxId: 9606]} | 99.89 | |
| d1e6ia_ | 111 | GCN5 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 99.88 | |
| d1eqfa2 | 128 | TAFII250 double bromodomain module {Human (Homo sa | 99.88 | |
| d1wuma1 | 118 | P300/CAF histone acetyltransferase bromodomain {Hu | 99.87 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.87 | |
| d3dwya1 | 114 | CREB-binding protein, CBP {Human (Homo sapiens) [T | 99.86 | |
| d1eqfa1 | 139 | TAFII250 double bromodomain module {Human (Homo sa | 99.86 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.86 | |
| d1eqfa2 | 128 | TAFII250 double bromodomain module {Human (Homo sa | 99.84 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.84 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.83 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.83 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.77 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.75 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.71 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.71 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.69 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.69 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.66 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.58 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.49 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.45 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.43 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.38 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.36 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.18 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.96 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.86 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.86 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.7 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 98.67 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.65 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 98.62 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 98.6 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.58 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 98.58 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 98.56 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.55 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.52 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.47 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.44 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 98.35 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 97.85 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 97.76 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 97.75 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 97.65 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.62 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.6 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 97.49 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 97.4 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 97.32 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 97.3 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 97.1 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 97.0 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 96.97 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 96.89 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 96.74 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 96.73 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 96.66 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 96.47 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 96.41 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 96.4 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 96.39 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 96.25 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 96.24 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 96.07 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 95.92 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 95.76 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 94.99 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 93.46 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 93.24 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 92.22 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 91.93 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 89.39 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 88.85 | |
| d1wp5a_ | 323 | Topoisomerase IV subunit A, ParC, C-terminal domai | 87.6 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 86.74 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 85.02 |
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=6.6e-36 Score=354.14 Aligned_cols=308 Identities=23% Similarity=0.364 Sum_probs=268.3
Q ss_pred eEEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECC
Q psy9598 469 HYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQ 548 (1915)
Q Consensus 469 ~~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~ 548 (1915)
.++|.||.++|+||+|+|++++||||+.||+|+|||+.+++++.++.+|...|.+++|++++.++++++.++.+.+|+..
T Consensus 10 ~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (317)
T d1vyhc1 10 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ 89 (317)
T ss_dssp SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETT
T ss_pred cEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeeccccccccccccccccccccc
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECC
Q psy9598 549 TLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSP 628 (1915)
Q Consensus 549 tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fsp 628 (1915)
.......+.+|...+.++.|++. +..|++++.|+.+++||+.++..+..+ ..|...+.+++|++
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~d~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~ 153 (317)
T d1vyhc1 90 GFECIRTMHGHDHNVSSVSIMPN----GDHIVSASRDKTIKMWEVQTGYCVKTF------------TGHREWVRMVRPNQ 153 (317)
T ss_dssp SSCEEECCCCCSSCEEEEEECSS----SSEEEEEETTSEEEEEETTTCCEEEEE------------ECCSSCEEEEEECT
T ss_pred ccccccccccccccceeeeccCC----CceEEeeccCcceeEeecccceeeeEE------------ccCCCcceeeeccc
Confidence 99999999999999999999994 489999999999999999887543332 24567899999999
Q ss_pred CCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccC
Q psy9598 629 GGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCL 708 (1915)
Q Consensus 629 dg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~ 708 (1915)
++.+|++|+.||.|++|++. ....+..+.+|...+.+++|++++..+......+.
T Consensus 154 ~~~~l~~~~~d~~v~~~~~~---~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~---------------------- 208 (317)
T d1vyhc1 154 DGTLIASCSNDQTVRVWVVA---TKECKAELREHRHVVECISWAPESSYSSISEATGS---------------------- 208 (317)
T ss_dssp TSSEEEEEETTSCEEEEETT---TCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSC----------------------
T ss_pred CCCEEEEEeCCCeEEEEeec---cceeeEEEecCCCCceEEEEeeccccceeeccccc----------------------
Confidence 99999999999999999983 44567778899999999999987653322211111
Q ss_pred CCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEEecCce
Q psy9598 709 PHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGL 788 (1915)
Q Consensus 709 ~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~ 788 (1915)
....+...+.++++++. |+.|++||+.++.++..+.+|...|.+++|+| ++.+|++|+.||.
T Consensus 209 ----------------~~~~~~~~~~~~~~~~~-d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~ 270 (317)
T d1vyhc1 209 ----------------ETKKSGKPGPFLLSGSR-DKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHS-GGKFILSCADDKT 270 (317)
T ss_dssp ----------------C-------CCEEEEEET-TSEEEEEETTTTEEEEEEECCSSCEEEEEECS-SSSCEEEEETTTE
T ss_pred ----------------eeeeeccCCceeEeccC-CCEEEEEECCCCcEEEEEeCCCCCEEEEEECC-CCCEEEEEECCCe
Confidence 11233456778888887 99999999999999999999999999999999 9999999999999
Q ss_pred EEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEEeCCCeEEEEe
Q psy9598 789 IIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYG 842 (1915)
Q Consensus 789 I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~dG~I~Iwd 842 (1915)
|+|||+.++++ +..+. .|.+.|++++|+|++.+||+|+.||.|+||+
T Consensus 271 i~iwd~~~~~~--~~~~~-----~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 271 LRVWDYKNKRC--MKTLN-----AHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp EEEECCTTSCC--CEEEE-----CCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred EEEEECCCCcE--EEEEc-----CCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence 99999999988 76665 4678999999999999999999999999996
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.6e-34 Score=349.55 Aligned_cols=287 Identities=15% Similarity=0.191 Sum_probs=246.7
Q ss_pred eeeeEEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCc-----EEEEEeCCCCCEEEEEEeCCCCEEEEEeCCC
Q psy9598 466 LRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGK-----LLATLRGCSGEISDIAIDNRNILLAAGTVDK 540 (1915)
Q Consensus 466 ~~~~~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~-----~~~~l~gH~~~I~~Lafspdg~~LaSgs~Dg 540 (1915)
.+.++.+ +|...|+||+|+|+|++||||+ ||.|+|||+.++. ......+|.+.|++|+|+|++++|++|+.||
T Consensus 42 ~~~~~~~-~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg 119 (337)
T d1gxra_ 42 ARQINTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEAS 119 (337)
T ss_dssp EEEEEEE-CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSS
T ss_pred ceEEEEC-CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeeccc
Confidence 3444555 8999999999999999999997 7899999997653 3334568999999999999999999999999
Q ss_pred cEEEEECCC--CceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCC
Q psy9598 541 TIRIWNLQT--LAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGN 618 (1915)
Q Consensus 541 tIrVWDl~t--g~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~ 618 (1915)
+|+|||+.. +.....+.+|...|.+++|+|. +.+|++++.|+.|++|++.++..... ...|.
T Consensus 120 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~l~s~~~d~~i~~~~~~~~~~~~~------------~~~~~ 183 (337)
T d1gxra_ 120 TLSIWDLAAPTPRIKAELTSSAPACYALAISPD----SKVCFSCCSDGNIAVWDLHNQTLVRQ------------FQGHT 183 (337)
T ss_dssp EEEEEECCCC--EEEEEEECSSSCEEEEEECTT----SSEEEEEETTSCEEEEETTTTEEEEE------------ECCCS
T ss_pred ccccccccccccccccccccccccccccccccc----cccccccccccccccccccccccccc------------ccccc
Confidence 999999875 4556778899999999999994 48999999999999999987753222 23456
Q ss_pred CceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceE
Q psy9598 619 AHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWR 698 (1915)
Q Consensus 619 ~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~ 698 (1915)
..|.+++|++++..+++|+.||.|++||+.. ...+. ...|...|.+++|+|++.+|++|+.||.|++||+.++...
T Consensus 184 ~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~---~~~~~-~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~ 259 (337)
T d1gxra_ 184 DGASCIDISNDGTKLWTGGLDNTVRSWDLRE---GRQLQ-QHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY 259 (337)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTT---TEEEE-EEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE
T ss_pred ccccccccccccccccccccccccccccccc---ceeec-ccccccceEEEEEcccccccceeccccccccccccccccc
Confidence 8899999999999999999999999999843 23333 3468899999999999999999999999999999887643
Q ss_pred EeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCC
Q psy9598 699 FIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSR 778 (1915)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~ 778 (1915)
. ...|...|++++|+|++.+|++++. ||.|++||+.+++.+..+. |.+.|++++|+| +++
T Consensus 260 ~-----------------~~~~~~~i~~v~~s~~g~~l~s~s~-Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~-d~~ 319 (337)
T d1gxra_ 260 Q-----------------LHLHESCVLSLKFAYCGKWFVSTGK-DNLLNAWRTPYGASIFQSK-ESSSVLSCDISV-DDK 319 (337)
T ss_dssp E-----------------ECCCSSCEEEEEECTTSSEEEEEET-TSEEEEEETTTCCEEEEEE-CSSCEEEEEECT-TSC
T ss_pred c-----------------ccccccccceEEECCCCCEEEEEeC-CCeEEEEECCCCCEEEEcc-CCCCEEEEEEeC-CCC
Confidence 2 1236778999999999999999988 9999999999999988765 778999999999 999
Q ss_pred EEEEEecCceEEEEEC
Q psy9598 779 VLLSAGHDGLIIIWDI 794 (1915)
Q Consensus 779 ~LaSgs~DG~I~IWdl 794 (1915)
+|+||+.||+|+|||+
T Consensus 320 ~l~t~s~D~~I~vWdl 335 (337)
T d1gxra_ 320 YIVTGSGDKKATVYEV 335 (337)
T ss_dssp EEEEEETTSCEEEEEE
T ss_pred EEEEEeCCCeEEEEEE
Confidence 9999999999999997
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.9e-34 Score=355.72 Aligned_cols=321 Identities=23% Similarity=0.339 Sum_probs=251.4
Q ss_pred ccCCCeEEEecccCCc---eeeeEEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEe-----------
Q psy9598 450 GPLSRSLMISSHKYSN---LRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLR----------- 515 (1915)
Q Consensus 450 g~~d~~~~i~~~~~~~---~~~~~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~----------- 515 (1915)
+..++...+|...... ..++ ...+|.+.|+||+|+|+|++||+|+ |++|+|||+.++.++..+.
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~l~-~~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~ 111 (388)
T d1erja_ 34 KQTNDYYILYNPALPREIDVELH-KSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPEN 111 (388)
T ss_dssp EECSSCEEEECTTSCCCEEEEEE-EEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC----------
T ss_pred cCCCCcEEEeCCCCCcceeeeeE-eeCCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccc
Confidence 3445566676543332 2223 3347999999999999999999987 8899999999998887764
Q ss_pred -------CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeE
Q psy9598 516 -------GCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCI 588 (1915)
Q Consensus 516 -------gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI 588 (1915)
+|...|++|+|+|++++|++|+.||+|++||..++..+..+.+|...|.++.|++. +..+++|+.+|.|
T Consensus 112 ~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~----~~~~~~~~~~~~i 187 (388)
T d1erja_ 112 LNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPS----GDKLVSGSGDRTV 187 (388)
T ss_dssp -------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTT----SSEEEEEETTSEE
T ss_pred cccccccCCCCCEEEEEECCCCCcceecccccccccccccccccccccccccccccccccccc----cccccccccceee
Confidence 45667999999999999999999999999999999999999999999999999984 4899999999999
Q ss_pred EEEecccCccccceeccCccccccccCCCCCceEEEEEC-CCCcEEEEEeCCCeEEEEEecCCCCCce----eEEeccCC
Q psy9598 589 GFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFS-PGGLFLATGSGDHHVRVYKMDGVDSPLG----ILEVEEHS 663 (1915)
Q Consensus 589 ~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs-pdg~~Lasgs~Dg~I~IwDl~~~~~~~~----i~~l~~h~ 663 (1915)
++||+.+......... + ....++.++ +++.+|++|+.||.|++|++........ .....+|.
T Consensus 188 ~~~d~~~~~~~~~~~~------------~-~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~ 254 (388)
T d1erja_ 188 RIWDLRTGQCSLTLSI------------E-DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHK 254 (388)
T ss_dssp EEEETTTTEEEEEEEC------------S-SCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCS
T ss_pred eeeecccccccccccc------------c-cccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCC
Confidence 9999987654322221 2 334455555 4789999999999999999853321111 11235789
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecC
Q psy9598 664 DKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFN 743 (1915)
Q Consensus 664 ~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~D 743 (1915)
+.|.+++|+|++.+|++|+.||.|++||+.+......... ............|...|.+++|++++.+|++|+. |
T Consensus 255 ~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~----~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~-d 329 (388)
T d1erja_ 255 DSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKT----PNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSK-D 329 (388)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEEC-------------------CEEEEEECCSSCEEEEEECGGGCEEEEEET-T
T ss_pred CCEEEEEECCCCCEEEEEECCCcEEEEeccCCcccccccc----ccccceeeecccccceEEEEEECCCCCEEEEEeC-C
Confidence 9999999999999999999999999999987663321111 0111112233457788999999999999999998 9
Q ss_pred CeEEEEECCCCceEEEeeCCCCCeEEEEE------ccCCCCEEEEEecCceEEEEECC
Q psy9598 744 FQIKIWDAFNGDLVQVLKGHTNEVFVLES------HPFDSRVLLSAGHDGLIIIWDIL 795 (1915)
Q Consensus 744 g~I~vwD~~tg~~i~~l~gH~~~V~sl~~------sp~dg~~LaSgs~DG~I~IWdl~ 795 (1915)
|.|++||+.+++++.++.+|.+.|+++++ +| ++.+|||||.||+|+||++.
T Consensus 330 g~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~sp-d~~~l~s~s~Dg~I~iW~~~ 386 (388)
T d1erja_ 330 RGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGP-EYNVFATGSGDCKARIWKYK 386 (388)
T ss_dssp SEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCT-TCEEEEEEETTSEEEEEEEE
T ss_pred CEEEEEECCCCcEEEEEeCCCCCEEEEEEecCcccCC-CCCEEEEEeCCCEEEEEeee
Confidence 99999999999999999999999999985 55 78899999999999999984
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=1.1e-33 Score=340.47 Aligned_cols=292 Identities=20% Similarity=0.364 Sum_probs=254.6
Q ss_pred eeeeEEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEE
Q psy9598 466 LRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIW 545 (1915)
Q Consensus 466 ~~~~~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVW 545 (1915)
++..++|.||.+.|+||+|+|++.+||||+.||+|+|||+.++..+..+.+|...|++++|+|++.+|++|+.|+.|++|
T Consensus 45 ~~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~ 124 (340)
T d1tbga_ 45 MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIY 124 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEE
T ss_pred eeeeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeecc
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCC----ceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCce
Q psy9598 546 NLQTL----APISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHI 621 (1915)
Q Consensus 546 Dl~tg----~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V 621 (1915)
+.... .....+.+|...+....+.. ...++.+..++.+..|.......... ...+...+
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~ 187 (340)
T d1tbga_ 125 NLKTREGNVRVSRELAGHTGYLSCCRFLD-----DNQIVTSSGDTTCALWDIETGQQTTT------------FTGHTGDV 187 (340)
T ss_dssp ESSSSCSCCCEEEEECCCSSCEEEEEEEE-----TTEEEEEETTTEEEEEETTTTEEEEE------------EECCSSCE
T ss_pred cccccccccccceeccccccccccccccc-----cccccccccccccccccccccccccc------------ccccceeE
Confidence 98653 45667788888777766655 25788888999999988765532211 12345678
Q ss_pred EEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEee
Q psy9598 622 LCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIR 701 (1915)
Q Consensus 622 ~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~ 701 (1915)
.++.+.+.+.++++|+.|+.|++||+ .....+..+.+|.+.|++|+|+|++.+|++|+.||.|++|++.........
T Consensus 188 ~~~~~~~~~~~~~~~~~d~~v~i~d~---~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~ 264 (340)
T d1tbga_ 188 MSLSLAPDTRLFVSGACDASAKLWDV---REGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTY 264 (340)
T ss_dssp EEEEECTTSSEEEEEETTTEEEEEET---TTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred eeeccccccceeEEeecCceEEEEEC---CCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeeccccccccc
Confidence 99999999999999999999999998 345667788999999999999999999999999999999999887654322
Q ss_pred ecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEE
Q psy9598 702 LDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLL 781 (1915)
Q Consensus 702 ~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~La 781 (1915)
....+...|.+++|++++.+|++|+. ||.|+|||+.+++++..+.+|.+.|++|+|+| ++.+|+
T Consensus 265 --------------~~~~~~~~i~~~~~s~~~~~l~~g~~-dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~-d~~~l~ 328 (340)
T d1tbga_ 265 --------------SHDNIICGITSVSFSKSGRLLLAGYD-DFNCNVWDALKADRAGVLAGHDNRVSCLGVTD-DGMAVA 328 (340)
T ss_dssp --------------CCTTCCSCEEEEEECSSSCEEEEEET-TSCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSCEE
T ss_pred --------------ccccccCceEEEEECCCCCEEEEEEC-CCEEEEEECCCCcEEEEEcCCCCCEEEEEEeC-CCCEEE
Confidence 12235567999999999999999998 99999999999999999999999999999999 999999
Q ss_pred EEecCceEEEEE
Q psy9598 782 SAGHDGLIIIWD 793 (1915)
Q Consensus 782 Sgs~DG~I~IWd 793 (1915)
|||.||+|+|||
T Consensus 329 s~s~Dg~v~iWd 340 (340)
T d1tbga_ 329 TGSWDSFLKIWN 340 (340)
T ss_dssp EEETTSCEEEEC
T ss_pred EEccCCEEEEeC
Confidence 999999999997
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.1e-33 Score=339.94 Aligned_cols=288 Identities=13% Similarity=0.204 Sum_probs=245.9
Q ss_pred cEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCce-----EEEeecCCCCeEEEEeccCccCCCcEEEEEe
Q psy9598 509 KLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAP-----ISVLVGHQGIITGVNFCPLEVNGFNYLASTS 583 (1915)
Q Consensus 509 ~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~-----~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs 583 (1915)
+.+.++ +|...|+||+|+|+|++||+|+ ||.|+|||+.++.. .....+|.+.|.+|+|+|+ +++|++|+
T Consensus 43 ~~~~~~-~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~d----g~~l~s~~ 116 (337)
T d1gxra_ 43 RQINTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPD----GCTLIVGG 116 (337)
T ss_dssp EEEEEE-CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTT----SSEEEEEE
T ss_pred eEEEEC-CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCC----CCEEEEee
Confidence 455666 6999999999999999999997 89999999976532 2344579999999999994 58999999
Q ss_pred CCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCC
Q psy9598 584 TDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHS 663 (1915)
Q Consensus 584 ~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~ 663 (1915)
.||+|++||+........ ..+..|...+.+++|+|++.+|++++.++.|++|++. .........+|.
T Consensus 117 ~dg~i~iwd~~~~~~~~~----------~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~---~~~~~~~~~~~~ 183 (337)
T d1gxra_ 117 EASTLSIWDLAAPTPRIK----------AELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLH---NQTLVRQFQGHT 183 (337)
T ss_dssp SSSEEEEEECCCC--EEE----------EEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETT---TTEEEEEECCCS
T ss_pred cccccccccccccccccc----------ccccccccccccccccccccccccccccccccccccc---cccccccccccc
Confidence 999999999876532111 1233566789999999999999999999999999984 345566778899
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecC
Q psy9598 664 DKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFN 743 (1915)
Q Consensus 664 ~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~D 743 (1915)
..|.+++|++++..+++|+.||.|++||+++++..... .+...|.+++|+|++.+|++++. |
T Consensus 184 ~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~-----------------~~~~~i~~l~~~~~~~~l~~~~~-d 245 (337)
T d1gxra_ 184 DGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQH-----------------DFTSQIFSLGYCPTGEWLAVGME-S 245 (337)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE-----------------ECSSCEEEEEECTTSSEEEEEET-T
T ss_pred cccccccccccccccccccccccccccccccceeeccc-----------------ccccceEEEEEcccccccceecc-c
Confidence 99999999999999999999999999999988744321 24567999999999999999998 9
Q ss_pred CeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEc
Q psy9598 744 FQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWS 823 (1915)
Q Consensus 744 g~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafS 823 (1915)
+.|++||+.++... ....|...|++++|+| ++.+|++|+.||+|+|||+.+++. +..+. +.+.|.+++|+
T Consensus 246 ~~i~i~d~~~~~~~-~~~~~~~~i~~v~~s~-~g~~l~s~s~Dg~i~iwd~~~~~~--~~~~~------~~~~v~~~~~s 315 (337)
T d1gxra_ 246 SNVEVLHVNKPDKY-QLHLHESCVLSLKFAY-CGKWFVSTGKDNLLNAWRTPYGAS--IFQSK------ESSSVLSCDIS 315 (337)
T ss_dssp SCEEEEETTSSCEE-EECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCE--EEEEE------CSSCEEEEEEC
T ss_pred cccccccccccccc-cccccccccceEEECC-CCCEEEEEeCCCeEEEEECCCCCE--EEEcc------CCCCEEEEEEe
Confidence 99999999988765 4568999999999999 999999999999999999999887 55443 56889999999
Q ss_pred CCCCEEEEEeCCCeEEEEeC
Q psy9598 824 PDGTTCALTDSYGHLLVYGL 843 (1915)
Q Consensus 824 pdg~~Lasg~~dG~I~Iwdl 843 (1915)
|+|++||+|+.||.|+||++
T Consensus 316 ~d~~~l~t~s~D~~I~vWdl 335 (337)
T d1gxra_ 316 VDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp TTSCEEEEEETTSCEEEEEE
T ss_pred CCCCEEEEEeCCCeEEEEEE
Confidence 99999999999999999996
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=8.6e-33 Score=331.42 Aligned_cols=330 Identities=24% Similarity=0.412 Sum_probs=269.7
Q ss_pred CceeeeEEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEE
Q psy9598 464 SNLRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIR 543 (1915)
Q Consensus 464 ~~~~~~~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIr 543 (1915)
..++..++|.||.+.|.+ +++++|++|||||.||+|+|||+.+++++.++.+|.+.|.+++|+++ +|++|+.|++++
T Consensus 4 ~~~~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~ 80 (342)
T d2ovrb2 4 GELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLK 80 (342)
T ss_dssp SCCCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT--EEEEEETTSCEE
T ss_pred CCCCcCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCC--ccccceeccccc
Confidence 445667789999999865 35667999999999999999999999999999999999999999975 999999999999
Q ss_pred EEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEE
Q psy9598 544 IWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILC 623 (1915)
Q Consensus 544 VWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~ 623 (1915)
+|+............+...+....+.+ ..++.++.|+.|.+|+..++......... .. ..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~d~~i~~~~~~~~~~~~~~~~~------------~~--~~ 140 (342)
T d2ovrb2 81 VWNAETGECIHTLYGHTSTVRCMHLHE------KRVVSGSRDATLRVWDIETGQCLHVLMGH------------VA--AV 140 (342)
T ss_dssp EEETTTTEEEEEECCCSSCEEEEEEET------TEEEEEETTSEEEEEESSSCCEEEEEECC------------SS--CE
T ss_pred ccccccccceecccccceeEeeeeccc------ccccccccceeEEEeecccccceeeeecc------------cc--cc
Confidence 999998888888877777777777665 68889999999999999887543322211 11 22
Q ss_pred EEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeec
Q psy9598 624 SSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLD 703 (1915)
Q Consensus 624 l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~ 703 (1915)
..+......+++++.|+.|++||+. ....+..+.+|...+..+.+ ++.+|++|+.||.|++||+..+......
T Consensus 141 ~~~~~~~~~~~~~~~d~~i~~~d~~---~~~~~~~~~~~~~~~~~~~~--~~~~l~s~~~dg~i~~~d~~~~~~~~~~-- 213 (342)
T d2ovrb2 141 RCVQYDGRRVVSGAYDFMVKVWDPE---TETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTL-- 213 (342)
T ss_dssp EEEEECSSCEEEEETTSCEEEEEGG---GTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEE--
T ss_pred eeeccccceeeeecCCCeEEEeecc---cceeeEEEcCcccccccccC--CCCEEEEEeCCCeEEEeecccceeeeEe--
Confidence 3344566789999999999999983 44566778888877766655 6789999999999999999988754322
Q ss_pred ccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeC---CCCCeEEEEEccCCCCEE
Q psy9598 704 MNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKG---HTNEVFVLESHPFDSRVL 780 (1915)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~g---H~~~V~sl~~sp~dg~~L 780 (1915)
..+...+.+++++ +.+|++++. ||.|++||+...+....+.+ |...+.++.+++ .+|
T Consensus 214 --------------~~~~~~v~~~~~~--~~~l~s~s~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 273 (342)
T d2ovrb2 214 --------------TGHQSLTSGMELK--DNILVSGNA-DSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK---NFV 273 (342)
T ss_dssp --------------CCCCSCEEEEEEE--TTEEEEEET-TSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECS---SEE
T ss_pred --------------cccccceeEEecC--CCEEEEEcC-CCEEEEEecccccccccccccceeeeceeecccCC---Cee
Confidence 2355667777775 468888888 99999999999988888875 456677777755 799
Q ss_pred EEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEEeCCCe----EEEEeCCC
Q psy9598 781 LSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGH----LLVYGLGG 845 (1915)
Q Consensus 781 aSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~dG~----I~Iwdl~s 845 (1915)
++|+.||+|+|||+.+++. +..+.....+.+.+.|++++|+|++.+||+|+.||+ |++||++.
T Consensus 274 ~s~s~Dg~i~iwd~~tg~~--i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~~ 340 (342)
T d2ovrb2 274 ITSSDDGTVKLWDLKTGEF--IRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 340 (342)
T ss_dssp EEEETTSEEEEEETTTCCE--EEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred EEEcCCCEEEEEECCCCCE--EEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCCC
Confidence 9999999999999999988 777765555567788999999999999999999985 99999874
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.4e-32 Score=331.31 Aligned_cols=334 Identities=20% Similarity=0.342 Sum_probs=253.4
Q ss_pred eEEecCCCCcE-EEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEEC
Q psy9598 469 HYVNLGHLSAV-FCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNL 547 (1915)
Q Consensus 469 ~~~l~gH~~~V-~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl 547 (1915)
..+|.||.+.| +|++|+ |++||||+.||+|+|||+.+++++.++.+|.+.|++|+|+++ .+|++|+.|++|++|++
T Consensus 5 ~~tL~GH~~~vitc~~~~--~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~ 81 (355)
T d1nexb2 5 RTTLRGHMTSVITCLQFE--DNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDI 81 (355)
T ss_dssp EEEEECCSSSCEEEEEEE--TTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEET
T ss_pred cEEECCcCCCcEEEEEEC--CCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCC-CEEEEEecccccccccc
Confidence 45799998885 677665 889999999999999999999999999999999999999986 58999999999999999
Q ss_pred CCCceEEEeecCCCC--eEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCc-----------ccccccc
Q psy9598 548 QTLAPISVLVGHQGI--ITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEP-----------VMFNERI 614 (1915)
Q Consensus 548 ~tg~~~~~l~~h~~~--V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~-----------~~~~~~~ 614 (1915)
...........+... +..+.+.+ ++.++++++.|++|++||+.+............ .......
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (355)
T d1nexb2 82 KKGCCTHVFEGHNSTVRCLDIVEYK----NIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVL 157 (355)
T ss_dssp TTTEEEEEECCCSSCEEEEEEEEET----TEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEE
T ss_pred ccccccccccccccccccccccccc----ccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeee
Confidence 998887776654443 34455555 458999999999999999987654332211100 0011111
Q ss_pred CCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccC
Q psy9598 615 RPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKC 694 (1915)
Q Consensus 615 ~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~ 694 (1915)
..|...+. .+.+++.++++++.|+.|++||+. ....+....++...+.++.|++++.++++++.||.|++||+.+
T Consensus 158 ~~~~~~v~--~~~~~~~~~~~~~~d~~i~~~d~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~ 232 (355)
T d1nexb2 158 RGHMASVR--TVSGHGNIVVSGSYDNTLIVWDVA---QMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLEN 232 (355)
T ss_dssp ECCSSCEE--EEEEETTEEEEEETTSCEEEEETT---TTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTT
T ss_pred eecccccc--ccccccceeeeecccceeeeeecc---cccceeeeeccccccccccccccceeeecccccceEEeeeccc
Confidence 22233333 455678899999999999999983 4456677788999999999999999999999999999999998
Q ss_pred CceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCCCeEEEEEcc
Q psy9598 695 SQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHP 774 (1915)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp 774 (1915)
+..... ..+|...|.+++|+ +.+|++++. ||.|++||+.++... +.+|...+.++.+.+
T Consensus 233 ~~~~~~----------------~~~h~~~v~~~~~~--~~~l~~~~~-dg~i~iwd~~~~~~~--~~~~~~~~~~~~~~~ 291 (355)
T d1nexb2 233 GELMYT----------------LQGHTALVGLLRLS--DKFLVSAAA-DGSIRGWDANDYSRK--FSYHHTNLSAITTFY 291 (355)
T ss_dssp CCEEEE----------------ECCCSSCCCEEEEC--SSEEEEECT-TSEEEEEETTTCCEE--EEEECTTCCCCCEEE
T ss_pred cccccc----------------cccccccccccccc--cceeeeeec-cccccccccccccee--cccccCCceEEEEEc
Confidence 875432 23466778889886 468888888 999999999887654 445666666665444
Q ss_pred CCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEEeCCCeEEEEeC
Q psy9598 775 FDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGL 843 (1915)
Q Consensus 775 ~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl 843 (1915)
.++.+|++| .||+|+|||+.++++ +... ...|.+.|++++|+|+ .+|++++.||.++||-+
T Consensus 292 ~~~~~l~~g-~d~~i~vwd~~tg~~--~~~~----~~~~~~~V~~v~~~~~-~~~~~~s~dg~~~l~~~ 352 (355)
T d1nexb2 292 VSDNILVSG-SENQFNIYNLRSGKL--VHAN----ILKDADQIWSVNFKGK-TLVAAVEKDGQSFLEIL 352 (355)
T ss_dssp ECSSEEEEE-ETTEEEEEETTTCCB--CCSC----TTTTCSEEEEEEEETT-EEEEEEESSSCEEEEEE
T ss_pred CCCCEEEEE-eCCEEEEEECCCCCE--EEEE----ecCCCCCEEEEEEcCC-eEEEEEECCCcEEEEEE
Confidence 377766655 589999999999887 4321 1246688999999987 57888899998766543
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=1.4e-32 Score=331.08 Aligned_cols=289 Identities=14% Similarity=0.153 Sum_probs=243.6
Q ss_pred CCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceE
Q psy9598 474 GHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPI 553 (1915)
Q Consensus 474 gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~ 553 (1915)
.+.+.+.+++++|+|..||.++ ++.|.+|++.++.....+.+|.+.|++++|+|+|++||+|+.||+|+|||+.++...
T Consensus 15 ~~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~ 93 (311)
T d1nr0a1 15 TARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHI 93 (311)
T ss_dssp CCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCC
T ss_pred CCCCCeEEEEEcCCCCEEEEEe-CCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccc
Confidence 4556677899999999999986 557999999999999999999999999999999999999999999999999887643
Q ss_pred --EEeecCCCCeEEEEeccCccCCCcEEEEEeC--CCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCC
Q psy9598 554 --SVLVGHQGIITGVNFCPLEVNGFNYLASTST--DGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPG 629 (1915)
Q Consensus 554 --~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~--DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspd 629 (1915)
..+.+|.+.|.+++|+|+ +.+|++++. +..+++|++.++..... +..|...|.+++|+|+
T Consensus 94 ~~~~~~~~~~~v~~v~~s~d----~~~l~~~~~~~~~~~~v~~~~~~~~~~~------------l~~h~~~v~~v~~~~~ 157 (311)
T d1nr0a1 94 LKTTIPVFSGPVKDISWDSE----SKRIAAVGEGRERFGHVFLFDTGTSNGN------------LTGQARAMNSVDFKPS 157 (311)
T ss_dssp EEEEEECSSSCEEEEEECTT----SCEEEEEECCSSCSEEEEETTTCCBCBC------------CCCCSSCEEEEEECSS
T ss_pred cccccccccCcccccccccc----cccccccccccccccccccccccccccc------------cccccccccccccccc
Confidence 568899999999999994 488888875 45699999987754332 3356788999999999
Q ss_pred CcE-EEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccC
Q psy9598 630 GLF-LATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCL 708 (1915)
Q Consensus 630 g~~-Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~ 708 (1915)
+.+ |++|+.||.|++||+. .......+.+|...|.+++|+|++.+|++|+.||.|++||+.++........
T Consensus 158 ~~~~l~sgs~d~~i~i~d~~---~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~----- 229 (311)
T d1nr0a1 158 RPFRIISGSDDNTVAIFEGP---PFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFED----- 229 (311)
T ss_dssp SSCEEEEEETTSCEEEEETT---TBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBC-----
T ss_pred ceeeeccccccccccccccc---ccccccccccccccccccccCccccccccccccccccccccccccccccccc-----
Confidence 885 7889999999999983 4566777889999999999999999999999999999999998775443211
Q ss_pred CCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCC---CeEEEEEccCCCCEEEEEec
Q psy9598 709 PHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTN---EVFVLESHPFDSRVLLSAGH 785 (1915)
Q Consensus 709 ~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~---~V~sl~~sp~dg~~LaSgs~ 785 (1915)
......+|...|++++|+|++.+|++++. ||.|+|||+.+++++.++..|.. .+.++.|+ +..|++++.
T Consensus 230 ----~~~~~~~h~~~V~~~~~s~~~~~l~tgs~-Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~---~~~l~s~s~ 301 (311)
T d1nr0a1 230 ----DSLKNVAHSGSVFGLTWSPDGTKIASASA-DKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWT---KQALVSISA 301 (311)
T ss_dssp ----TTSSSCSSSSCEEEEEECTTSSEEEEEET-TSEEEEEETTTTEEEEEEECCSSGGGCEEEEEEC---SSCEEEEET
T ss_pred ----cccccccccccccccccCCCCCEEEEEeC-CCeEEEEECCCCcEEEEEECCCCccceEEEEEec---CCEEEEEEC
Confidence 11223457789999999999999999988 99999999999999999987754 34555554 467999999
Q ss_pred CceEEEEECC
Q psy9598 786 DGLIIIWDIL 795 (1915)
Q Consensus 786 DG~I~IWdl~ 795 (1915)
||.|++||..
T Consensus 302 dG~i~~wd~d 311 (311)
T d1nr0a1 302 NGFINFVNPE 311 (311)
T ss_dssp TCCEEEEETT
T ss_pred CCEEEEEeCC
Confidence 9999999973
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=5.8e-32 Score=333.35 Aligned_cols=315 Identities=17% Similarity=0.223 Sum_probs=250.5
Q ss_pred EEEECCCcEEEEECCCCcE----EEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEee----------
Q psy9598 492 VTGADDLLIKLWRARDGKL----LATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLV---------- 557 (1915)
Q Consensus 492 aTGs~Dg~I~IWd~~tg~~----~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~---------- 557 (1915)
+.+..++.+.+|+...... +....+|.+.|+||+|+|+|++||+|+ |++|+|||+.++..+..+.
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~ 110 (388)
T d1erja_ 32 LKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPE 110 (388)
T ss_dssp SEEECSSCEEEECTTSCCCEEEEEEEEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC---------
T ss_pred cccCCCCcEEEeCCCCCcceeeeeEeeCCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeeccccccccccc
Confidence 4566777888898755432 223346999999999999999999987 8999999999998877664
Q ss_pred --------cCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCC
Q psy9598 558 --------GHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPG 629 (1915)
Q Consensus 558 --------~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspd 629 (1915)
+|...|++|+|+|+ +.+|++|+.||+|++||...+..+.. ..+|...|.+++|+++
T Consensus 111 ~~~~~~~~~~~~~V~~l~~s~~----~~~l~s~~~dg~v~i~~~~~~~~~~~------------~~~h~~~v~~~~~~~~ 174 (388)
T d1erja_ 111 NLNTSSSPSSDLYIRSVCFSPD----GKFLATGAEDRLIRIWDIENRKIVMI------------LQGHEQDIYSLDYFPS 174 (388)
T ss_dssp --------CCCCBEEEEEECTT----SSEEEEEETTSCEEEEETTTTEEEEE------------ECCCSSCEEEEEECTT
T ss_pred ccccccccCCCCCEEEEEECCC----CCcceecccccccccccccccccccc------------cccccccccccccccc
Confidence 35667999999994 58999999999999999887754322 2356788999999999
Q ss_pred CcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCC
Q psy9598 630 GLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLP 709 (1915)
Q Consensus 630 g~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~ 709 (1915)
+..+++|+.+|.|++||+. ..........+...+..+.+.+++.+|++|+.||.|++|++.++........
T Consensus 175 ~~~~~~~~~~~~i~~~d~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~------ 245 (388)
T d1erja_ 175 GDKLVSGSGDRTVRIWDLR---TGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDS------ 245 (388)
T ss_dssp SSEEEEEETTSEEEEEETT---TTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC-------
T ss_pred cccccccccceeeeeeecc---ccccccccccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeecc------
Confidence 9999999999999999984 3334444444444444444445789999999999999999998875543211
Q ss_pred CCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCc------------eEEEeeCCCCCeEEEEEccCCC
Q psy9598 710 HTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGD------------LVQVLKGHTNEVFVLESHPFDS 777 (1915)
Q Consensus 710 ~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~------------~i~~l~gH~~~V~sl~~sp~dg 777 (1915)
.......|...|.+++|+|++.+|++++. ||.|++||+.++. +......|...|++++|+| ++
T Consensus 246 ---~~~~~~~h~~~v~~l~~s~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~ 320 (388)
T d1erja_ 246 ---ENESGTGHKDSVYSVVFTRDGQSVVSGSL-DRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQ-ND 320 (388)
T ss_dssp --------CCCSSCEEEEEECTTSSEEEEEET-TSEEEEEEC---------------CEEEEEECCSSCEEEEEECG-GG
T ss_pred ---ccccccCCCCCEEEEEECCCCCEEEEEEC-CCcEEEEeccCCccccccccccccceeeecccccceEEEEEECC-CC
Confidence 11223457788999999999999999998 9999999987543 4556678999999999999 99
Q ss_pred CEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEE------cCCCCEEEEEeCCCeEEEEeCC
Q psy9598 778 RVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKW------SPDGTTCALTDSYGHLLVYGLG 844 (1915)
Q Consensus 778 ~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vaf------Spdg~~Lasg~~dG~I~Iwdl~ 844 (1915)
.+|++|+.||.|+|||+.++++ +..+. .|.+.|.++++ +|++.+||+|+.||.|+||++.
T Consensus 321 ~~l~sg~~dg~i~vwd~~~~~~--~~~l~-----~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~ 386 (388)
T d1erja_ 321 EYILSGSKDRGVLFWDKKSGNP--LLMLQ-----GHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386 (388)
T ss_dssp CEEEEEETTSEEEEEETTTCCE--EEEEE-----CCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred CEEEEEeCCCEEEEEECCCCcE--EEEEe-----CCCCCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence 9999999999999999999988 66665 56788998875 6789999999999999999974
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=3.9e-32 Score=335.18 Aligned_cols=292 Identities=16% Similarity=0.193 Sum_probs=235.5
Q ss_pred CCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCc--EEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCce-
Q psy9598 476 LSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGK--LLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAP- 552 (1915)
Q Consensus 476 ~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~--~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~- 552 (1915)
..+|+|++|+|+|++||+|+.||.|+|||+.+++ ++..|.+|.+.|++|+|+|++++|++|+.|++|+|||+.++..
T Consensus 7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~ 86 (371)
T d1k8kc_ 7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWK 86 (371)
T ss_dssp SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEE
T ss_pred CCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccccc
Confidence 4889999999999999999999999999998775 6778899999999999999999999999999999999987654
Q ss_pred -EEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCc
Q psy9598 553 -ISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGL 631 (1915)
Q Consensus 553 -~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~ 631 (1915)
...+.+|...|++++|+|+ ++.|++|+.|++|++|++.......... .....|...|.|++|+|++.
T Consensus 87 ~~~~~~~~~~~v~~i~~~p~----~~~l~~~s~d~~i~i~~~~~~~~~~~~~--------~~~~~~~~~v~~v~~~p~~~ 154 (371)
T d1k8kc_ 87 PTLVILRINRAARCVRWAPN----EKKFAVGSGSRVISICYFEQENDWWVCK--------HIKKPIRSTVLSLDWHPNSV 154 (371)
T ss_dssp EEEECCCCSSCEEEEEECTT----SSEEEEEETTSSEEEEEEETTTTEEEEE--------EECTTCCSCEEEEEECTTSS
T ss_pred cccccccccccccccccccc----cccceeecccCcceeeeeeccccccccc--------cccccccccccccccccccc
Confidence 4556789999999999994 4899999999999999987764322211 22345678899999999999
Q ss_pred EEEEEeCCCeEEEEEecCCC---------------CCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCc
Q psy9598 632 FLATGSGDHHVRVYKMDGVD---------------SPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQ 696 (1915)
Q Consensus 632 ~Lasgs~Dg~I~IwDl~~~~---------------~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~ 696 (1915)
+|++|+.||.|++|++.... ....+....+|...|.+++|+|+|.+|++++.||.|++||+.++.
T Consensus 155 ~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~ 234 (371)
T d1k8kc_ 155 LLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKM 234 (371)
T ss_dssp EEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTT
T ss_pred ceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeeccc
Confidence 99999999999999985321 123456677899999999999999999999999999999998877
Q ss_pred eEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEE--CCCCceEE----------------
Q psy9598 697 WRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWD--AFNGDLVQ---------------- 758 (1915)
Q Consensus 697 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD--~~tg~~i~---------------- 758 (1915)
..... ..+...|.+++|++++.+|++| . |+.+++|. ...+....
T Consensus 235 ~~~~~----------------~~~~~~v~s~~fs~d~~~la~g-~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (371)
T d1k8kc_ 235 AVATL----------------ASETLPLLAVTFITESSLVAAG-H-DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLT 296 (371)
T ss_dssp EEEEE----------------ECSSCCEEEEEEEETTEEEEEE-T-TSSCEEEEEETTTTEEEECCCCCCC--------C
T ss_pred ceeee----------------ecccccceeeeecCCCCEEEEE-c-CCceEEEEeeCCCceEEEeeeecCcccccccccc
Confidence 54322 2356789999999999877654 4 67666554 32221110
Q ss_pred -----------------------EeeCCCCCeEEEEEccCCC---CEEEEEecCceEEEEECCCC
Q psy9598 759 -----------------------VLKGHTNEVFVLESHPFDS---RVLLSAGHDGLIIIWDILSS 797 (1915)
Q Consensus 759 -----------------------~l~gH~~~V~sl~~sp~dg---~~LaSgs~DG~I~IWdl~s~ 797 (1915)
....|.+.|++|++++... ..|+|+|.||.|+|||+.+.
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~~~ 361 (371)
T d1k8kc_ 297 ARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSL 361 (371)
T ss_dssp HHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHH
T ss_pred ceeeEecccceeEEeccccccceecccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeCCcC
Confidence 0014888999999987322 46899999999999999653
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=9.3e-31 Score=314.49 Aligned_cols=293 Identities=16% Similarity=0.224 Sum_probs=247.6
Q ss_pred cEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeE
Q psy9598 509 KLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCI 588 (1915)
Q Consensus 509 ~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI 588 (1915)
+..++|.||.+.|++|+|+|++.+||||+.||+|+|||+.++..+..+.+|...|++++|+|. +.+|++|+.|+.|
T Consensus 46 ~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~----~~~l~~~~~d~~i 121 (340)
T d1tbga_ 46 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS----GNYVACGGLDNIC 121 (340)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTT----SSEEEEEETTCCE
T ss_pred eeeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeecc----ceeeeeeccccee
Confidence 466789999999999999999999999999999999999999999999999999999999994 5899999999999
Q ss_pred EEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeE
Q psy9598 589 GFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDS 668 (1915)
Q Consensus 589 ~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~s 668 (1915)
.+|+.......... ...+..|.....+.... .+..++.+..++.+..|.. ...........+...+..
T Consensus 122 ~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 189 (340)
T d1tbga_ 122 SIYNLKTREGNVRV--------SRELAGHTGYLSCCRFL-DDNQIVTSSGDTTCALWDI---ETGQQTTTFTGHTGDVMS 189 (340)
T ss_dssp EEEESSSSCSCCCE--------EEEECCCSSCEEEEEEE-ETTEEEEEETTTEEEEEET---TTTEEEEEEECCSSCEEE
T ss_pred eccccccccccccc--------ceecccccccccccccc-ccccccccccccccccccc---ccccccccccccceeEee
Confidence 99998765432221 11223444444444444 4557788888999988887 334445556678888999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEE
Q psy9598 669 IQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKI 748 (1915)
Q Consensus 669 l~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~v 748 (1915)
+.+.+.+.++++|+.||.|++||+.++..... ...|...|++++|+|++.+|++++. ||.|++
T Consensus 190 ~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~----------------~~~h~~~i~~v~~~p~~~~l~s~s~-d~~i~~ 252 (340)
T d1tbga_ 190 LSLAPDTRLFVSGACDASAKLWDVREGMCRQT----------------FTGHESDINAICFFPNGNAFATGSD-DATCRL 252 (340)
T ss_dssp EEECTTSSEEEEEETTTEEEEEETTTTEEEEE----------------ECCCSSCEEEEEECTTSSEEEEEET-TSCEEE
T ss_pred eccccccceeEEeecCceEEEEECCCCcEEEE----------------EeCCCCCeEEEEECCCCCEEEEEeC-CCeEEE
Confidence 99999999999999999999999998875432 2346778999999999999999998 999999
Q ss_pred EECCCCceEEEee--CCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCC
Q psy9598 749 WDAFNGDLVQVLK--GHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDG 826 (1915)
Q Consensus 749 wD~~tg~~i~~l~--gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg 826 (1915)
|++.....+..+. .|...|++++|+| ++.+|++|+.||.|+|||+.++++ +..+. .|.+.|++++|+|+|
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~g~~dg~i~iwd~~~~~~--~~~~~-----~H~~~V~~l~~s~d~ 324 (340)
T d1tbga_ 253 FDLRADQELMTYSHDNIICGITSVSFSK-SGRLLLAGYDDFNCNVWDALKADR--AGVLA-----GHDNRVSCLGVTDDG 324 (340)
T ss_dssp EETTTTEEEEEECCTTCCSCEEEEEECS-SSCEEEEEETTSCEEEEETTTCCE--EEEEC-----CCSSCEEEEEECTTS
T ss_pred EeecccccccccccccccCceEEEEECC-CCCEEEEEECCCEEEEEECCCCcE--EEEEc-----CCCCCEEEEEEeCCC
Confidence 9999988877764 5667899999999 999999999999999999999887 66554 467899999999999
Q ss_pred CEEEEEeCCCeEEEEe
Q psy9598 827 TTCALTDSYGHLLVYG 842 (1915)
Q Consensus 827 ~~Lasg~~dG~I~Iwd 842 (1915)
.+||+|+.||.|+|||
T Consensus 325 ~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 325 MAVATGSWDSFLKIWN 340 (340)
T ss_dssp SCEEEEETTSCEEEEC
T ss_pred CEEEEEccCCEEEEeC
Confidence 9999999999999997
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=2.6e-31 Score=319.85 Aligned_cols=287 Identities=17% Similarity=0.175 Sum_probs=237.7
Q ss_pred CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEeccc
Q psy9598 516 GCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKL 595 (1915)
Q Consensus 516 gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~ 595 (1915)
.+.+.+.+|+++|+|..||.++ ++.|.+|++.++.....+.+|...|++++|+|+ +++|++|+.||+|++||+..
T Consensus 15 ~~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~----g~~latg~~dg~i~iwd~~~ 89 (311)
T d1nr0a1 15 TARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPS----GYYCASGDVHGNVRIWDTTQ 89 (311)
T ss_dssp CCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTT----SSEEEEEETTSEEEEEESSS
T ss_pred CCCCCeEEEEEcCCCCEEEEEe-CCEEEEEECCCCceeEEEcCCCCCEEEEEEeCC----CCeEeccccCceEeeeeeec
Confidence 3455677899999999999986 667999999999999999999999999999994 59999999999999999988
Q ss_pred CccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeC--CCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcC
Q psy9598 596 DIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSG--DHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSH 673 (1915)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~--Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fsp 673 (1915)
+....... +..|...|.+++|+|++.+|++++. +..++||++.. ......+.+|...|.+|+|+|
T Consensus 90 ~~~~~~~~----------~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~---~~~~~~l~~h~~~v~~v~~~~ 156 (311)
T d1nr0a1 90 TTHILKTT----------IPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDT---GTSNGNLTGQARAMNSVDFKP 156 (311)
T ss_dssp TTCCEEEE----------EECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTT---CCBCBCCCCCSSCEEEEEECS
T ss_pred cccccccc----------cccccCcccccccccccccccccccccccccccccccc---ccccccccccccccccccccc
Confidence 75433222 2356788999999999999999886 45699999843 344556789999999999999
Q ss_pred CCCE-EEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECC
Q psy9598 674 SHLR-FVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAF 752 (1915)
Q Consensus 674 dg~~-L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~ 752 (1915)
++.+ |++|+.||.|++||+++++.... ...|...|++++|+|++.+|++++. |+.|++||+.
T Consensus 157 ~~~~~l~sgs~d~~i~i~d~~~~~~~~~----------------~~~~~~~i~~v~~~p~~~~l~~~~~-d~~v~~~d~~ 219 (311)
T d1nr0a1 157 SRPFRIISGSDDNTVAIFEGPPFKFKST----------------FGEHTKFVHSVRYNPDGSLFASTGG-DGTIVLYNGV 219 (311)
T ss_dssp SSSCEEEEEETTSCEEEEETTTBEEEEE----------------ECCCSSCEEEEEECTTSSEEEEEET-TSCEEEEETT
T ss_pred cceeeecccccccccccccccccccccc----------------cccccccccccccCccccccccccc-cccccccccc
Confidence 9885 88899999999999998764432 2346778999999999999999988 9999999999
Q ss_pred CCceEEEee-------CCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCC
Q psy9598 753 NGDLVQVLK-------GHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPD 825 (1915)
Q Consensus 753 tg~~i~~l~-------gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpd 825 (1915)
++..+..+. +|.+.|++++|+| ++.+|+||+.||+|+|||+.++++ +..+.. .......+.++.| +
T Consensus 220 ~~~~~~~~~~~~~~~~~h~~~V~~~~~s~-~~~~l~tgs~Dg~v~iwd~~t~~~--~~~l~~--~~~~~~~~~~~~~--~ 292 (311)
T d1nr0a1 220 DGTKTGVFEDDSLKNVAHSGSVFGLTWSP-DGTKIASASADKTIKIWNVATLKV--EKTIPV--GTRIEDQQLGIIW--T 292 (311)
T ss_dssp TCCEEEECBCTTSSSCSSSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEE--EEEEEC--CSSGGGCEEEEEE--C
T ss_pred cccccccccccccccccccccccccccCC-CCCEEEEEeCCCeEEEEECCCCcE--EEEEEC--CCCccceEEEEEe--c
Confidence 998887764 6889999999999 999999999999999999999887 665541 1111233445555 5
Q ss_pred CCEEEEEeCCCeEEEEeCC
Q psy9598 826 GTTCALTDSYGHLLVYGLG 844 (1915)
Q Consensus 826 g~~Lasg~~dG~I~Iwdl~ 844 (1915)
+.+|++++.||.|++||.+
T Consensus 293 ~~~l~s~s~dG~i~~wd~d 311 (311)
T d1nr0a1 293 KQALVSISANGFINFVNPE 311 (311)
T ss_dssp SSCEEEEETTCCEEEEETT
T ss_pred CCEEEEEECCCEEEEEeCC
Confidence 5679999999999999974
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=2.6e-31 Score=315.81 Aligned_cols=288 Identities=16% Similarity=0.187 Sum_probs=228.9
Q ss_pred eeEEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEe-CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEE
Q psy9598 468 QHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLR-GCSGEISDIAIDNRNILLAAGTVDKTIRIWN 546 (1915)
Q Consensus 468 ~~~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~-gH~~~I~~Lafspdg~~LaSgs~DgtIrVWD 546 (1915)
+.+++.||.++|+||+|+|+|++||||+.||+|+|||+.+++++..+. +|...|++++|+|++.+ ++++.|+.|++|+
T Consensus 4 ~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~-~~~~~d~~v~~~~ 82 (299)
T d1nr0a2 4 IDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDL-FTVSWDDHLKVVP 82 (299)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCE-EEEETTTEEEEEC
T ss_pred cceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeecccee-ecccceeeEEEec
Confidence 457899999999999999999999999999999999999999998884 79999999999999975 4566799999999
Q ss_pred CCCCc---eEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEE
Q psy9598 547 LQTLA---PISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILC 623 (1915)
Q Consensus 547 l~tg~---~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~ 623 (1915)
+.... .......|...+.+++|+++ +.+++++ .++.+.+|+..... ... ....+.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~----g~~~~~~-~~~~i~~~~~~~~~---~~~-------------~~~~~~~ 141 (299)
T d1nr0a2 83 AGGSGVDSSKAVANKLSSQPLGLAVSAD----GDIAVAA-CYKHIAIYSHGKLT---EVP-------------ISYNSSC 141 (299)
T ss_dssp SSSSSSCTTSCCEEECSSCEEEEEECTT----SSCEEEE-ESSEEEEEETTEEE---EEE-------------CSSCEEE
T ss_pred cCCccccccccccccccccccccccccc----ccccccc-cccccccccccccc---ccc-------------ccccccc
Confidence 86532 12234457788999999984 3555555 45789999854321 111 1245789
Q ss_pred EEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeec
Q psy9598 624 SSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLD 703 (1915)
Q Consensus 624 l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~ 703 (1915)
++|+|++.+|++|+.||.|++||+.+.. ........|...|.+++|+|++.+|++++.||.|++||+.++.....
T Consensus 142 ~~~s~~~~~l~~g~~dg~i~~~d~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~--- 216 (299)
T d1nr0a2 142 VALSNDKQFVAVGGQDSKVHVYKLSGAS--VSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAH--- 216 (299)
T ss_dssp EEECTTSCEEEEEETTSEEEEEEEETTE--EEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESC---
T ss_pred cccccccccccccccccccccccccccc--ccccccccccccccccccccccccccccccccccccccccccccccc---
Confidence 9999999999999999999999995322 12223457899999999999999999999999999999987653221
Q ss_pred ccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEE--EeeCC-CCCeEEEEEccCCCCEE
Q psy9598 704 MNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQ--VLKGH-TNEVFVLESHPFDSRVL 780 (1915)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~--~l~gH-~~~V~sl~~sp~dg~~L 780 (1915)
......|...|++++|+|++.+|++++. ||.|+|||+.++.... ....| ...|.++.|. ++.+|
T Consensus 217 ----------~~~~~~h~~~v~~l~~s~~~~~l~sgs~-dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~l 283 (299)
T d1nr0a2 217 ----------TNSWTFHTAKVACVSWSPDNVRLATGSL-DNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWL--NETTI 283 (299)
T ss_dssp ----------CCCCCCCSSCEEEEEECTTSSEEEEEET-TSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEE--ETTEE
T ss_pred ----------cccccccccccccccccccccceEEEcC-CCEEEEEECCCCCcceEEEecCCCCCcEEEEEEC--CCCEE
Confidence 1123457788999999999999999998 9999999998765433 33344 4567777665 47899
Q ss_pred EEEecCceEEEEECC
Q psy9598 781 LSAGHDGLIIIWDIL 795 (1915)
Q Consensus 781 aSgs~DG~I~IWdl~ 795 (1915)
+|||.||+|+|||+.
T Consensus 284 ~s~s~D~~i~iWdl~ 298 (299)
T d1nr0a2 284 VSAGQDSNIKFWNVP 298 (299)
T ss_dssp EEEETTSCEEEEECC
T ss_pred EEEeCCCEEEEEecc
Confidence 999999999999983
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=3.9e-31 Score=326.10 Aligned_cols=310 Identities=17% Similarity=0.157 Sum_probs=241.4
Q ss_pred CCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCc--eEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecc
Q psy9598 517 CSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLA--PISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYK 594 (1915)
Q Consensus 517 H~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~--~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~ 594 (1915)
+..+|+|++|+|+|++||+|+.||.|+|||+.+++ ++..+.+|.+.|++|+|+|+ +++|++|+.|++|++||+.
T Consensus 6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~----~~~l~s~s~D~~i~vWd~~ 81 (371)
T d1k8kc_ 6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPD----SNRIVTCGTDRNAYVWTLK 81 (371)
T ss_dssp CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETT----TTEEEEEETTSCEEEEEEE
T ss_pred CCCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCC----CCEEEEEECCCeEEEEeec
Confidence 35789999999999999999999999999998775 66788999999999999994 4899999999999999998
Q ss_pred cCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCc-eeEEeccCCCCeeEEEEcC
Q psy9598 595 LDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPL-GILEVEEHSDKVDSIQWSH 673 (1915)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~-~i~~l~~h~~~V~sl~fsp 673 (1915)
++....... +..|...|.+++|+|++++|++|+.|+.|++|++....... .......|...|.+++|+|
T Consensus 82 ~~~~~~~~~----------~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p 151 (371)
T d1k8kc_ 82 GRTWKPTLV----------ILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHP 151 (371)
T ss_dssp TTEEEEEEE----------CCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECT
T ss_pred ccccccccc----------cccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccc
Confidence 764322222 23466889999999999999999999999999996543322 2334567899999999999
Q ss_pred CCCEEEEEeCCCcEEEEEccCCceEEeeecc--cccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEEC
Q psy9598 674 SHLRFVSGSRDGTALIWYYKCSQWRFIRLDM--NTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDA 751 (1915)
Q Consensus 674 dg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~ 751 (1915)
++.+|++|+.||+|++|++............ ...............+...|.+++|+|+|.+|++++. |+.|++||+
T Consensus 152 ~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~-d~~i~iwd~ 230 (371)
T d1k8kc_ 152 NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSH-DSTVCLADA 230 (371)
T ss_dssp TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEET-TTEEEEEEG
T ss_pred cccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeeccccccccccc-CCcceEEee
Confidence 9999999999999999998765422111000 0011111222334567788999999999999999988 999999999
Q ss_pred CCCceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceee--------------------------
Q psy9598 752 FNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWF-------------------------- 805 (1915)
Q Consensus 752 ~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~-------------------------- 805 (1915)
.++..+..+.+|..+|++|+|+| ++.+|++ |.|+.+++|....... ...+
T Consensus 231 ~~~~~~~~~~~~~~~v~s~~fs~-d~~~la~-g~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (371)
T d1k8kc_ 231 DKKMAVATLASETLPLLAVTFIT-ESSLVAA-GHDCFPVLFTYDSAAG--KLSFGGRLDVPKQSSQRGLTARERFQNLDK 306 (371)
T ss_dssp GGTTEEEEEECSSCCEEEEEEEE-TTEEEEE-ETTSSCEEEEEETTTT--EEEECCCCCCC--------CHHHHHHHCCC
T ss_pred ecccceeeeecccccceeeeecC-CCCEEEE-EcCCceEEEEeeCCCc--eEEEeeeecCccccccccccceeeEecccc
Confidence 99999999999999999999999 8877665 5578777766543221 0000
Q ss_pred ----------eeeecCCCCcceEEEEEcCCC----CEEEEEeCCCeEEEEeCCC
Q psy9598 806 ----------HNIVEGQGEGALFDGKWSPDG----TTCALTDSYGHLLVYGLGG 845 (1915)
Q Consensus 806 ----------~~~~~~~~~~~V~~vafSpdg----~~Lasg~~dG~I~Iwdl~s 845 (1915)
...+...|.+.|+++++.+.+ ..|++++.||.|+||++.+
T Consensus 307 ~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~~ 360 (371)
T d1k8kc_ 307 KASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS 360 (371)
T ss_dssp CC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred eeEEeccccccceecccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeCCc
Confidence 001112366789999998754 4699999999999999865
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=1.1e-30 Score=310.49 Aligned_cols=293 Identities=14% Similarity=0.145 Sum_probs=233.1
Q ss_pred CcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEee-cCCCCeEEEEeccCccCCCcEEEEEeCCC
Q psy9598 508 GKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLV-GHQGIITGVNFCPLEVNGFNYLASTSTDG 586 (1915)
Q Consensus 508 g~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~-~h~~~V~sl~fsp~~~~d~~~L~sgs~Dg 586 (1915)
|.+.+++.||.+.|++|+|+|++++||||+.||+|+|||+.++.++..+. +|...|++++|+|++ .+++++.|+
T Consensus 2 g~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g-----~~~~~~~d~ 76 (299)
T d1nr0a2 2 GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKG-----DLFTVSWDD 76 (299)
T ss_dssp TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTS-----CEEEEETTT
T ss_pred CccceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccc-----eeeccccee
Confidence 67889999999999999999999999999999999999999999988874 689999999999843 467778899
Q ss_pred eEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCe
Q psy9598 587 CIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKV 666 (1915)
Q Consensus 587 tI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V 666 (1915)
.|++|++......... .....+...+.+++|+++|.++++++ ++.+.+|+.. ..... .....+
T Consensus 77 ~v~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~s~~g~~~~~~~-~~~i~~~~~~-----~~~~~--~~~~~~ 139 (299)
T d1nr0a2 77 HLKVVPAGGSGVDSSK---------AVANKLSSQPLGLAVSADGDIAVAAC-YKHIAIYSHG-----KLTEV--PISYNS 139 (299)
T ss_dssp EEEEECSSSSSSCTTS---------CCEEECSSCEEEEEECTTSSCEEEEE-SSEEEEEETT-----EEEEE--ECSSCE
T ss_pred eEEEeccCCccccccc---------cccccccccccccccccccccccccc-cccccccccc-----ccccc--cccccc
Confidence 9999998654321111 11123456789999999998777665 5689999852 11111 244568
Q ss_pred eEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeE
Q psy9598 667 DSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQI 746 (1915)
Q Consensus 667 ~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I 746 (1915)
.+++|+|++.+|++|+.||.|++||+.++...... ...|...|++++|+|++.+|++++. |+.|
T Consensus 140 ~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~---------------~~~~~~~i~~~~~~~~~~~l~~~~~-d~~i 203 (299)
T d1nr0a2 140 SCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVK---------------TIVHPAEITSVAFSNNGAFLVATDQ-SRKV 203 (299)
T ss_dssp EEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEE---------------EEECSSCEEEEEECTTSSEEEEEET-TSCE
T ss_pred ccccccccccccccccccccccccccccccccccc---------------ccccccccccccccccccccccccc-cccc
Confidence 89999999999999999999999999877643321 1235678999999999999999988 9999
Q ss_pred EEEECCCCceE---EEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEc
Q psy9598 747 KIWDAFNGDLV---QVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWS 823 (1915)
Q Consensus 747 ~vwD~~tg~~i---~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafS 823 (1915)
++||+.++..+ ..+.+|...|++++|+| ++.+|++|+.||.|+|||+.++.. ...+. ...++...|.++.|
T Consensus 204 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~-~~~~l~sgs~dg~i~iwd~~~~~~--~~~~~--~~~~~~~~v~~~~~- 277 (299)
T d1nr0a2 204 IPYSVANNFELAHTNSWTFHTAKVACVSWSP-DNVRLATGSLDNSVIVWNMNKPSD--HPIII--KGAHAMSSVNSVIW- 277 (299)
T ss_dssp EEEEGGGTTEESCCCCCCCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTCTTS--CCEEE--TTSSTTSCEEEEEE-
T ss_pred ccccccccccccccccccccccccccccccc-cccceEEEcCCCEEEEEECCCCCc--ceEEE--ecCCCCCcEEEEEE-
Confidence 99999887654 35568999999999999 999999999999999999988765 22221 12233345666654
Q ss_pred CCCCEEEEEeCCCeEEEEeCC
Q psy9598 824 PDGTTCALTDSYGHLLVYGLG 844 (1915)
Q Consensus 824 pdg~~Lasg~~dG~I~Iwdl~ 844 (1915)
+++.+|++|+.||.|+||++.
T Consensus 278 ~~~~~l~s~s~D~~i~iWdl~ 298 (299)
T d1nr0a2 278 LNETTIVSAGQDSNIKFWNVP 298 (299)
T ss_dssp EETTEEEEEETTSCEEEEECC
T ss_pred CCCCEEEEEeCCCEEEEEecc
Confidence 567899999999999999974
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=2.3e-28 Score=294.12 Aligned_cols=303 Identities=24% Similarity=0.284 Sum_probs=236.2
Q ss_pred EEEEeCCCCCE-EEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEE
Q psy9598 511 LATLRGCSGEI-SDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIG 589 (1915)
Q Consensus 511 ~~~l~gH~~~I-~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~ 589 (1915)
..+|+||...| +|++| ++++||||+.||+|+|||+.+++++.++.+|.+.|++|+|+|. .+|++|+.||+|+
T Consensus 5 ~~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-----~~l~s~s~D~~i~ 77 (355)
T d1nexb2 5 RTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-----GILVSGSTDRTVR 77 (355)
T ss_dssp EEEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT-----TEEEEEETTCCEE
T ss_pred cEEECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCC-----CEEEEEecccccc
Confidence 56799998875 66665 5789999999999999999999999999999999999999873 5899999999999
Q ss_pred EEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCC-----------------
Q psy9598 590 FWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDS----------------- 652 (1915)
Q Consensus 590 iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~----------------- 652 (1915)
+|++............ .+...+..+.+++++.++++|+.|+.|++|++.....
T Consensus 78 iw~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 147 (355)
T d1nexb2 78 VWDIKKGCCTHVFEGH----------NSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTP 147 (355)
T ss_dssp EEETTTTEEEEEECCC----------SSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCT
T ss_pred cccccccccccccccc----------cccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceecc
Confidence 9999877543322221 2234456778889999999999999999999853221
Q ss_pred ---CceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEE
Q psy9598 653 ---PLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAW 729 (1915)
Q Consensus 653 ---~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~ 729 (1915)
...+.....|...|.. +.+++.++++++.|+.|++||+.++...... ..+...+.++.|
T Consensus 148 ~~~~~~~~~~~~~~~~v~~--~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~----------------~~~~~~~~~~~~ 209 (355)
T d1nexb2 148 EENPYFVGVLRGHMASVRT--VSGHGNIVVSGSYDNTLIVWDVAQMKCLYIL----------------SGHTDRIYSTIY 209 (355)
T ss_dssp TTCTTEEEEEECCSSCEEE--EEEETTEEEEEETTSCEEEEETTTTEEEEEE----------------CCCSSCEEEEEE
T ss_pred ccccceeeeeeeccccccc--cccccceeeeecccceeeeeecccccceeee----------------eccccccccccc
Confidence 1112223334444443 4567889999999999999999887644321 234566889999
Q ss_pred CCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeee
Q psy9598 730 DASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIV 809 (1915)
Q Consensus 730 spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~ 809 (1915)
++++.++++++. |+.|++||+.++.++..+.+|...|++++|++ .+|++|+.||+|++||+.+... ...+
T Consensus 210 ~~~~~~~~~~~~-d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~--~~~~---- 279 (355)
T d1nexb2 210 DHERKRCISASM-DTTIRIWDLENGELMYTLQGHTALVGLLRLSD---KFLVSAAADGSIRGWDANDYSR--KFSY---- 279 (355)
T ss_dssp ETTTTEEEEEET-TSCEEEEETTTCCEEEEECCCSSCCCEEEECS---SEEEEECTTSEEEEEETTTCCE--EEEE----
T ss_pred cccceeeecccc-cceEEeeecccccccccccccccccccccccc---ceeeeeecccccccccccccce--eccc----
Confidence 999999999998 99999999999999999999999999999976 7999999999999999987755 3222
Q ss_pred cCCCCcceEE-EEEcCCCCEEEEEeCCCeEEEEeCCCCccccc-CCC------ceeecCCC
Q psy9598 810 EGQGEGALFD-GKWSPDGTTCALTDSYGHLLVYGLGGFKRPQN-IPR------ELFFHTDY 862 (1915)
Q Consensus 810 ~~~~~~~V~~-vafSpdg~~Lasg~~dG~I~Iwdl~s~~~~~~-l~~------~~~F~~d~ 862 (1915)
+...+.+ ++|++++.+|++| .||.|+|||+.+++.+.. +.. .+.|+++.
T Consensus 280 ---~~~~~~~~~~~~~~~~~l~~g-~d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~~ 336 (355)
T d1nexb2 280 ---HHTNLSAITTFYVSDNILVSG-SENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKT 336 (355)
T ss_dssp ---ECTTCCCCCEEEECSSEEEEE-ETTEEEEEETTTCCBCCSCTTTTCSEEEEEEEETTE
T ss_pred ---ccCCceEEEEEcCCCCEEEEE-eCCEEEEEECCCCCEEEEEecCCCCCEEEEEEcCCe
Confidence 2333444 4567788877766 589999999999987754 222 46788764
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.96 E-value=1e-28 Score=291.67 Aligned_cols=287 Identities=19% Similarity=0.307 Sum_probs=244.8
Q ss_pred ccccccCCCeEEEecccCCceeeeEEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEE
Q psy9598 446 REYSGPLSRSLMISSHKYSNLRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIA 525 (1915)
Q Consensus 446 r~~tg~~d~~~~i~~~~~~~~~~~~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~La 525 (1915)
..++|+.|+++.+|+.. ...+..++.+|.+.|++++|++++.++++++.++.+.+|+.........+.+|...+.++.
T Consensus 31 ~l~s~s~Dg~i~iWd~~--~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (317)
T d1vyhc1 31 VMVSASEDATIKVWDYE--TGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVS 108 (317)
T ss_dssp EEEEEESSSCEEEEETT--TCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEE
T ss_pred EEEEEeCCCeEEEEECC--CCCEEEEEeCCCCcEEEEeeecccccccccccccccccccccccccccccccccccceeee
Confidence 35678899999999754 3456678999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceecc
Q psy9598 526 IDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFH 605 (1915)
Q Consensus 526 fspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~ 605 (1915)
|++++..|++++.|+.+++||+.++..+..+.+|...+.+++|++. +.+|++|+.||.|++|++.++.....
T Consensus 109 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~~~d~~v~~~~~~~~~~~~~---- 180 (317)
T d1vyhc1 109 IMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQD----GTLIASCSNDQTVRVWVVATKECKAE---- 180 (317)
T ss_dssp ECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTT----SSEEEEEETTSCEEEEETTTCCEEEE----
T ss_pred ccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccC----CCEEEEEeCCCeEEEEeeccceeeEE----
Confidence 9999999999999999999999999999999999999999999984 48999999999999999987754322
Q ss_pred CccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCC
Q psy9598 606 EPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDG 685 (1915)
Q Consensus 606 ~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG 685 (1915)
+..+...+.+++|+|++..+......+ .....+...+.++++|+.||
T Consensus 181 --------~~~~~~~i~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~d~ 227 (317)
T d1vyhc1 181 --------LREHRHVVECISWAPESSYSSISEATG-------------------------SETKKSGKPGPFLLSGSRDK 227 (317)
T ss_dssp --------ECCCSSCEEEEEECCSCGGGGGGGCCS-------------------------CC-------CCEEEEEETTS
T ss_pred --------EecCCCCceEEEEeeccccceeecccc-------------------------ceeeeeccCCceeEeccCCC
Confidence 234567789999998765433222211 12223445677899999999
Q ss_pred cEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCC
Q psy9598 686 TALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTN 765 (1915)
Q Consensus 686 ~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~ 765 (1915)
.|++||+.++..+... .+|...|.+++|+|++.+|++++. ||.|+|||+.+++++.++.+|.+
T Consensus 228 ~i~~~~~~~~~~~~~~----------------~~~~~~v~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~h~~ 290 (317)
T d1vyhc1 228 TIKMWDVSTGMCLMTL----------------VGHDNWVRGVLFHSGGKFILSCAD-DKTLRVWDYKNKRCMKTLNAHEH 290 (317)
T ss_dssp EEEEEETTTTEEEEEE----------------ECCSSCEEEEEECSSSSCEEEEET-TTEEEEECCTTSCCCEEEECCSS
T ss_pred EEEEEECCCCcEEEEE----------------eCCCCCEEEEEECCCCCEEEEEEC-CCeEEEEECCCCcEEEEEcCCCC
Confidence 9999999988754422 246778999999999999999998 99999999999999999999999
Q ss_pred CeEEEEEccCCCCEEEEEecCceEEEEE
Q psy9598 766 EVFVLESHPFDSRVLLSAGHDGLIIIWD 793 (1915)
Q Consensus 766 ~V~sl~~sp~dg~~LaSgs~DG~I~IWd 793 (1915)
.|++|+|+| ++.+|+|||.||+|+|||
T Consensus 291 ~V~~~~~s~-~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 291 FVTSLDFHK-TAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp CEEEEEECS-SSSCEEEEETTSEEEEEC
T ss_pred CEEEEEEcC-CCCEEEEEeCCCeEEEeC
Confidence 999999999 999999999999999997
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=1.2e-27 Score=286.16 Aligned_cols=323 Identities=18% Similarity=0.232 Sum_probs=245.4
Q ss_pred EECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEE
Q psy9598 503 WRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLAST 582 (1915)
Q Consensus 503 Wd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sg 582 (1915)
|+..+.++..+|+||.+.|.+ +++++|++|||||.||+|+|||+.+++++.++.+|.+.|++++|+| .+|++|
T Consensus 1 W~~~~~~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~------~~l~s~ 73 (342)
T d2ovrb2 1 WRRGELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD------NIIISG 73 (342)
T ss_dssp HHHSCCCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEET------TEEEEE
T ss_pred CCCCCCCcCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCC------Cccccc
Confidence 566677888899999999865 4666789999999999999999999999999999999999999987 699999
Q ss_pred eCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccC
Q psy9598 583 STDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEH 662 (1915)
Q Consensus 583 s~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h 662 (1915)
+.|+++++|+........... .+...+....+ .+..++.+..|+.|.+|+... ......+..+
T Consensus 74 s~D~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~--~~~~~~~~~~d~~i~~~~~~~---~~~~~~~~~~ 136 (342)
T d2ovrb2 74 STDRTLKVWNAETGECIHTLY------------GHTSTVRCMHL--HEKRVVSGSRDATLRVWDIET---GQCLHVLMGH 136 (342)
T ss_dssp ETTSCEEEEETTTTEEEEEEC------------CCSSCEEEEEE--ETTEEEEEETTSEEEEEESSS---CCEEEEEECC
T ss_pred eecccccccccccccceeccc------------ccceeEeeeec--ccccccccccceeEEEeeccc---ccceeeeecc
Confidence 999999999987664322111 12233444443 345788899999999999843 2333334333
Q ss_pred CCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEec
Q psy9598 663 SDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINF 742 (1915)
Q Consensus 663 ~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~ 742 (1915)
..... .+......+++++.||.|++||+......... ..+...+.. +++++.+|++++.
T Consensus 137 ~~~~~--~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~----------------~~~~~~~~~--~~~~~~~l~s~~~- 195 (342)
T d2ovrb2 137 VAAVR--CVQYDGRRVVSGAYDFMVKVWDPETETCLHTL----------------QGHTNRVYS--LQFDGIHVVSGSL- 195 (342)
T ss_dssp SSCEE--EEEECSSCEEEEETTSCEEEEEGGGTEEEEEE----------------CCCSSCEEE--EEECSSEEEEEET-
T ss_pred cccce--eeccccceeeeecCCCeEEEeecccceeeEEE----------------cCccccccc--ccCCCCEEEEEeC-
Confidence 33333 34456678999999999999999877644322 123333444 4457889999988
Q ss_pred CCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEE
Q psy9598 743 NFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKW 822 (1915)
Q Consensus 743 Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vaf 822 (1915)
||.|++||+..++++..+.+|...|.++++++ ++|++|+.||.|+|||+...+. ...+. ....+...+.+++|
T Consensus 196 dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~---~~l~s~s~d~~i~iwd~~~~~~--~~~~~--~~~~~~~~~~~~~~ 268 (342)
T d2ovrb2 196 DTSIRVWDVETGNCIHTLTGHQSLTSGMELKD---NILVSGNADSTVKIWDIKTGQC--LQTLQ--GPNKHQSAVTCLQF 268 (342)
T ss_dssp TSCEEEEETTTCCEEEEECCCCSCEEEEEEET---TEEEEEETTSCEEEEETTTCCE--EEEEC--STTSCSSCEEEEEE
T ss_pred CCeEEEeecccceeeeEecccccceeEEecCC---CEEEEEcCCCEEEEEecccccc--ccccc--ccceeeeceeeccc
Confidence 99999999999999999999999999998876 7999999999999999988776 44433 11233455666665
Q ss_pred cCCCCEEEEEeCCCeEEEEeCCCCcccccCC-----------CceeecCCCCeeeecCC-----Cccceeecc
Q psy9598 823 SPDGTTCALTDSYGHLLVYGLGGFKRPQNIP-----------RELFFHTDYRTLNRPNG-----LFEPTYDEV 879 (1915)
Q Consensus 823 Spdg~~Lasg~~dG~I~Iwdl~s~~~~~~l~-----------~~~~F~~d~~~Lv~~~~-----~~~~v~D~~ 879 (1915)
++.+|++|+.||.|+||++.+++.+..++ ..+.|++++..++.... ..+.+||..
T Consensus 269 --~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~ 339 (342)
T d2ovrb2 269 --NKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFD 339 (342)
T ss_dssp --CSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECC
T ss_pred --CCCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCC
Confidence 46799999999999999999998876553 25789999988875432 235688754
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=1.3e-27 Score=279.20 Aligned_cols=280 Identities=22% Similarity=0.406 Sum_probs=225.7
Q ss_pred eeeeEEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEE
Q psy9598 466 LRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIW 545 (1915)
Q Consensus 466 ~~~~~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVW 545 (1915)
++.+..+.+|...|+|++| +|++||||+.||+|+|||+.+++++.+|.+|.+.|++|+| ++++|++|+.|++|++|
T Consensus 5 ~~~i~~~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~ 80 (293)
T d1p22a2 5 LQRIHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVW 80 (293)
T ss_dssp CCCEECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEE
T ss_pred EEEEeccCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeeccccccccccc
Confidence 3444566789999999766 6999999999999999999999999999999999999987 57799999999999999
Q ss_pred ECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEE
Q psy9598 546 NLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSS 625 (1915)
Q Consensus 546 Dl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~ 625 (1915)
++..+........+.....+..... ..+++++.++.+.+|++......... ..+..|...+.++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~v~~~~ 145 (293)
T d1p22a2 81 DVNTGEMLNTLIHHCEAVLHLRFNN------GMMVTCSKDRSIAVWDMASPTDITLR---------RVLVGHRAAVNVVD 145 (293)
T ss_dssp ESSSCCEEEEECCCCSCEEEEECCT------TEEEEEETTSCEEEEECSSSSCCEEE---------EEECCCSSCEEEEE
T ss_pred ccccccccccccccccccccccccc------cceeecccccceeEeecccccccccc---------ccccccccccccce
Confidence 9999988887776665554444332 68999999999999998876432221 12235567777777
Q ss_pred ECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeeccc
Q psy9598 626 FSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMN 705 (1915)
Q Consensus 626 fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~ 705 (1915)
+.+ ..+++++.|+.|++||+. ....+..+.+|...|..+.++ +..|++++.||+|++||+.+.......
T Consensus 146 ~~~--~~~~~~s~d~~i~~~d~~---~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~---- 214 (293)
T d1p22a2 146 FDD--KYIVSASGDRTIKVWNTS---TCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVL---- 214 (293)
T ss_dssp EET--TEEEEEETTSEEEEEETT---TCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEE----
T ss_pred ecc--cccccccCCCceeeecCC---CCcEEEEEcccccccccccCC--CCeEEEecCCCEEEEEecccceeeeee----
Confidence 765 478899999999999993 445677788999999888875 568999999999999999987755432
Q ss_pred ccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCC---------CceEEEeeCCCCCeEEEEEccCC
Q psy9598 706 TCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFN---------GDLVQVLKGHTNEVFVLESHPFD 776 (1915)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~t---------g~~i~~l~gH~~~V~sl~~sp~d 776 (1915)
..+...+. .+++++.+|++++. ||.|++||+.+ ..++..+.+|.+.|++|+|++
T Consensus 215 ------------~~~~~~v~--~~~~~~~~l~sg~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d~-- 277 (293)
T d1p22a2 215 ------------EGHEELVR--CIRFDNKRIVSGAY-DGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDE-- 277 (293)
T ss_dssp ------------CCCSSCEE--EEECCSSEEEEEET-TSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEECS--
T ss_pred ------------cccceeee--eccccceEEEEEcC-CCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEcC--
Confidence 12333444 35677889999988 99999999642 457889999999999999965
Q ss_pred CCEEEEEecCceEEEEE
Q psy9598 777 SRVLLSAGHDGLIIIWD 793 (1915)
Q Consensus 777 g~~LaSgs~DG~I~IWd 793 (1915)
.+|+|||.||+|+|||
T Consensus 278 -~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 278 -FQIVSSSHDDTILIWD 293 (293)
T ss_dssp -SCEEECCSSSEEEEEC
T ss_pred -CEEEEEecCCEEEEeC
Confidence 6899999999999997
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=6.3e-28 Score=287.86 Aligned_cols=318 Identities=12% Similarity=0.089 Sum_probs=236.8
Q ss_pred eeeeEEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcE---EEEEeCCCCCEEEEEEeCC-CCEEEEEeCCCc
Q psy9598 466 LRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKL---LATLRGCSGEISDIAIDNR-NILLAAGTVDKT 541 (1915)
Q Consensus 466 ~~~~~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~---~~~l~gH~~~I~~Lafspd-g~~LaSgs~Dgt 541 (1915)
|+++..+.+|.+.|++|+|+|+|++|||||.||+|+|||+.++.. +....+|.+.|++|+|+++ +.+|++|+.||+
T Consensus 1 ~~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~ 80 (342)
T d1yfqa_ 1 MQIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGE 80 (342)
T ss_dssp CEEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSC
T ss_pred CCeEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccc
Confidence 466778899999999999999999999999999999999976643 2333479999999999986 558999999999
Q ss_pred EEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCce
Q psy9598 542 IRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHI 621 (1915)
Q Consensus 542 IrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V 621 (1915)
|++|++..+........+...+....+.+. +...+++++.++++++||++............. ........
T Consensus 81 v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~------~~~~~~~~ 151 (342)
T d1yfqa_ 81 ILKVDLIGSPSFQALTNNEANLGICRICKY---GDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLN------SNNTKVKN 151 (342)
T ss_dssp EEEECSSSSSSEEECBSCCCCSCEEEEEEE---TTTEEEEEETTSEEEEECHHHHTTBCEEEEESC------SSSSSSCC
T ss_pred eeeeeccccccccccccccccccccccccc---ccccccccccccccceeeccccccceeeecccc------ccccccee
Confidence 999999988887777666655444433331 358999999999999999977654333322211 11112334
Q ss_pred EEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEc-CCCCEEEEEeCCCcEEEEEccCCceEEe
Q psy9598 622 LCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWS-HSHLRFVSGSRDGTALIWYYKCSQWRFI 700 (1915)
Q Consensus 622 ~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fs-pdg~~L~sgs~DG~I~IWDl~~~~~~~~ 700 (1915)
.++.+.+.+..+++|+.||.|++|++..............+...+.++.+. .++..+++++.||.+.+|++........
T Consensus 152 ~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~ 231 (342)
T d1yfqa_ 152 KIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYN 231 (342)
T ss_dssp CEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTT
T ss_pred eeeeeeccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceee
Confidence 566777888899999999999999996655544555555666666666655 4577999999999999999875432111
Q ss_pred eecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEE
Q psy9598 701 RLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVL 780 (1915)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~L 780 (1915)
... ...............+...|++|+|+|++.+|++|+. ||.|+|||+.+++.+..+..+. .+..++|+| ++.+|
T Consensus 232 ~~~-~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~-Dg~v~vWD~~~~~~l~~~~~~~-~~~~~~~s~-~~~~l 307 (342)
T d1yfqa_ 232 SSK-RFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGS-DGIISCWNLQTRKKIKNFAKFN-EDSVVKIAC-SDNIL 307 (342)
T ss_dssp CTT-CEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEET-TSCEEEEETTTTEEEEECCCCS-SSEEEEEEE-CSSEE
T ss_pred ccc-cceeeeeeeccCCCcccccceeEEecCCccEEEEECC-CCEEEEEECCCCcEEEEecCCC-CCEEEEEEe-CCCEE
Confidence 000 0000011122334557778999999999999999998 9999999999999999886443 345677788 88999
Q ss_pred EEEecCceEEEEECCC
Q psy9598 781 LSAGHDGLIIIWDILS 796 (1915)
Q Consensus 781 aSgs~DG~I~IWdl~s 796 (1915)
++|+.|+++++|....
T Consensus 308 ~~a~sdd~~~~~~~~~ 323 (342)
T d1yfqa_ 308 CLATSDDTFKTNAAID 323 (342)
T ss_dssp EEEEECTHHHHCSSSC
T ss_pred EEEEcCCcEEEeeeeC
Confidence 9999999999887643
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=1.8e-27 Score=287.69 Aligned_cols=295 Identities=18% Similarity=0.222 Sum_probs=227.6
Q ss_pred CCEEEEEEeCCCCEEEEEeCCC-cEEEEECCC--CceEEEeecCC-CCeEEEEeccCccCCCcEEEEEeCCCeEEEEecc
Q psy9598 519 GEISDIAIDNRNILLAAGTVDK-TIRIWNLQT--LAPISVLVGHQ-GIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYK 594 (1915)
Q Consensus 519 ~~I~~Lafspdg~~LaSgs~Dg-tIrVWDl~t--g~~~~~l~~h~-~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~ 594 (1915)
+.+++|+|+|++..|+.++.+. .|+.|+... ...+..+.+|. ..|++++|+|.. ++.+|++|+.||+|+|||+.
T Consensus 18 ~~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~--~g~~lasgs~Dg~i~iWd~~ 95 (325)
T d1pgua1 18 NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIK--GSQYLCSGDESGKVIVWGWT 95 (325)
T ss_dssp TCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSST--TCCEEEEEETTSEEEEEEEE
T ss_pred CCeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCC--CCCEEEEEeCCCCEEEeeec
Confidence 3568899999999999887554 356676543 34577788875 689999999964 66899999999999999998
Q ss_pred cCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeC--CCeEEEEEecCCCCCceeEEeccCCCCeeEEEEc
Q psy9598 595 LDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSG--DHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWS 672 (1915)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~--Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fs 672 (1915)
.+......... ....+..+.+.|.+++|+++|.+|++++. ++.+.+|+++ ....+..+.+|...|.+++|+
T Consensus 96 ~~~~~~~~~~~----~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~h~~~v~~~~~~ 168 (325)
T d1pgua1 96 FDKESNSVEVN----VKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD---SGNSLGEVSGHSQRINACHLK 168 (325)
T ss_dssp EEGGGTEEEEE----EEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT---TCCEEEECCSCSSCEEEEEEC
T ss_pred CCcceeeeecc----cccccccccCcEEEEEECCCCCccceeeccccceEEEEeec---ccccceeeeeccccccccccc
Confidence 77654444332 11223456788999999999999887764 6789999984 345677889999999999999
Q ss_pred CCCCE-EEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCC-CCEEEEEEecCCeEEEEE
Q psy9598 673 HSHLR-FVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDAS-DRWVITAINFNFQIKIWD 750 (1915)
Q Consensus 673 pdg~~-L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spd-g~~L~t~s~~Dg~I~vwD 750 (1915)
+++.+ +++++.||.|++||+...+..... .....+...|.+++|+|+ +.+|++++. |+.|++||
T Consensus 169 ~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~-------------~~~~~~~~~v~~v~~~pd~~~~l~s~~~-d~~i~iwd 234 (325)
T d1pgua1 169 QSRPMRSMTVGDDGSVVFYQGPPFKFSASD-------------RTHHKQGSFVRDVEFSPDSGEFVITVGS-DRKISCFD 234 (325)
T ss_dssp SSSSCEEEEEETTTEEEEEETTTBEEEEEE-------------CSSSCTTCCEEEEEECSTTCCEEEEEET-TCCEEEEE
T ss_pred ccccceEEEeecccccccccccccccceec-------------ccccCCCCccEEeeeccccceecccccc-ccceeeee
Confidence 99875 778999999999998876533321 112346778999999997 577777777 99999999
Q ss_pred CCCCceEEEeeCCCCCeEEEEEc---cCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEE--EEEcCC
Q psy9598 751 AFNGDLVQVLKGHTNEVFVLESH---PFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFD--GKWSPD 825 (1915)
Q Consensus 751 ~~tg~~i~~l~gH~~~V~sl~~s---p~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~--vafSpd 825 (1915)
+.+++++..+.+|...|.++.|+ | ++.+|++|+.||+|+|||+.++++ +..+. ...+...+.. +.|.++
T Consensus 235 ~~~~~~~~~l~~~~~~v~~~~~s~~~~-dg~~l~s~s~D~~i~iwd~~~~~~--~~~~~---~~~~~~~~~~~~~~~~~~ 308 (325)
T d1pgua1 235 GKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKC--VQKWT---LDKQQLGNQQVGVVATGN 308 (325)
T ss_dssp TTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEE--EEEEE---CCTTCGGGCEEEEEEEET
T ss_pred eccccccccccccccccccceeeeecc-CCCEEEEEeCCCeEEEEECCCCCE--EEEEE---ecCCcccCeEEEEEECCC
Confidence 99999999999998877555554 4 789999999999999999999887 65554 1122223333 444443
Q ss_pred CCEEEEEeCCCeEEEEeC
Q psy9598 826 GTTCALTDSYGHLLVYGL 843 (1915)
Q Consensus 826 g~~Lasg~~dG~I~Iwdl 843 (1915)
.+|++++.||.|+||++
T Consensus 309 -~~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 309 -GRIISLSLDGTLNFYEL 325 (325)
T ss_dssp -TEEEEEETTSCEEEEET
T ss_pred -CEEEEEECCCEEEEEEC
Confidence 47889999999999996
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=1.6e-27 Score=288.16 Aligned_cols=287 Identities=11% Similarity=0.115 Sum_probs=217.0
Q ss_pred cEEEEEEcCCCCEEEEEECCC-cEEEEECCCC--cEEEEEeCCC-CCEEEEEEeC--CCCEEEEEeCCCcEEEEECCCCc
Q psy9598 478 AVFCVLFDKLGEVIVTGADDL-LIKLWRARDG--KLLATLRGCS-GEISDIAIDN--RNILLAAGTVDKTIRIWNLQTLA 551 (1915)
Q Consensus 478 ~V~~vafspdg~~LaTGs~Dg-~I~IWd~~tg--~~~~~l~gH~-~~I~~Lafsp--dg~~LaSgs~DgtIrVWDl~tg~ 551 (1915)
.+++++|+|+|..||.++.++ .|+.|+.... ..+..+.+|. ..|++++|+| ++.+||+|+.||+|+|||+..+.
T Consensus 19 ~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~ 98 (325)
T d1pgua1 19 FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDK 98 (325)
T ss_dssp CCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEG
T ss_pred CeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCc
Confidence 467899999999999987664 3556665443 4567788885 6799999998 57899999999999999997543
Q ss_pred e--------EEEeecCCCCeEEEEeccCccCCCcEEEEEe--CCCeEEEEecccCccccceeccCccccccccCCCCCce
Q psy9598 552 P--------ISVLVGHQGIITGVNFCPLEVNGFNYLASTS--TDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHI 621 (1915)
Q Consensus 552 ~--------~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs--~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V 621 (1915)
. ...+..|.+.|.+++|+++ +.+|++++ .++.+.+|++.++..+.. +..|...|
T Consensus 99 ~~~~~~~~~~~~~~~~~~~v~~v~~s~~----~~~l~~~~~~~~~~~~~~~~~~~~~~~~------------~~~h~~~v 162 (325)
T d1pgua1 99 ESNSVEVNVKSEFQVLAGPISDISWDFE----GRRLCVVGEGRDNFGVFISWDSGNSLGE------------VSGHSQRI 162 (325)
T ss_dssp GGTEEEEEEEEEEECCSSCEEEEEECTT----SSEEEEEECCSSCSEEEEETTTCCEEEE------------CCSCSSCE
T ss_pred ceeeeecccccccccccCcEEEEEECCC----CCccceeeccccceEEEEeeccccccee------------eeeccccc
Confidence 2 2345678899999999984 47777665 467899999987754322 23567889
Q ss_pred EEEEECCCCcE-EEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCC-CCEEEEEeCCCcEEEEEccCCceEE
Q psy9598 622 LCSSFSPGGLF-LATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHS-HLRFVSGSRDGTALIWYYKCSQWRF 699 (1915)
Q Consensus 622 ~~l~fspdg~~-Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspd-g~~L~sgs~DG~I~IWDl~~~~~~~ 699 (1915)
.+++|+|++.+ +++++.||.|++|++.............+|...|.+++|+|+ +.+|++|+.||.|++||+++++...
T Consensus 163 ~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~ 242 (325)
T d1pgua1 163 NACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLK 242 (325)
T ss_dssp EEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEE
T ss_pred ccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeeccccccc
Confidence 99999999875 678999999999998433222233334578889999999996 6789999999999999999887554
Q ss_pred eeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCCC--eEEEEEccCCC
Q psy9598 700 IRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNE--VFVLESHPFDS 777 (1915)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~--V~sl~~sp~dg 777 (1915)
..... .......+.+++| ++|.+|++++. |+.|+|||+.+++++..+..|... +..+++.+..+
T Consensus 243 ~l~~~------------~~~v~~~~~s~~~-~dg~~l~s~s~-D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (325)
T d1pgua1 243 YIEDD------------QEPVQGGIFALSW-LDSQKFATVGA-DATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGN 308 (325)
T ss_dssp ECCBT------------TBCCCSCEEEEEE-SSSSEEEEEET-TSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEET
T ss_pred ccccc------------ccccccceeeeec-cCCCEEEEEeC-CCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCC
Confidence 32110 1112233455555 57899999988 999999999999999998876653 33444443235
Q ss_pred CEEEEEecCceEEEEEC
Q psy9598 778 RVLLSAGHDGLIIIWDI 794 (1915)
Q Consensus 778 ~~LaSgs~DG~I~IWdl 794 (1915)
.+|++||.||+|+|||+
T Consensus 309 ~~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 309 GRIISLSLDGTLNFYEL 325 (325)
T ss_dssp TEEEEEETTSCEEEEET
T ss_pred CEEEEEECCCEEEEEEC
Confidence 68999999999999996
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=2.3e-27 Score=294.52 Aligned_cols=345 Identities=11% Similarity=0.085 Sum_probs=236.4
Q ss_pred eEEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCc------EEEEEeCCCCCEEEEEEeC-------CCCEEEE
Q psy9598 469 HYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGK------LLATLRGCSGEISDIAIDN-------RNILLAA 535 (1915)
Q Consensus 469 ~~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~------~~~~l~gH~~~I~~Lafsp-------dg~~LaS 535 (1915)
.....||.+.|++|+++ +++|+|||.|++|+|||..+.. .......|...+..+.+.. ++.++++
T Consensus 7 ~~~~~~H~~~I~~v~~~--~~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 84 (393)
T d1sq9a_ 7 ANAGKAHDADIFSVSAC--NSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVAT 84 (393)
T ss_dssp EEESSCSSSCEEEEEEC--SSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEE
T ss_pred eecCCcccCccEEEEEe--CCEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEE
Confidence 45668999999999987 4699999999999999976653 2333445665554443321 2457889
Q ss_pred EeCCCcEEEEECCCCceEEE-----e-----ecCCCCeEEEEeccCcc-CCCcEEEEEeCCCeEEEEecccCccccce-e
Q psy9598 536 GTVDKTIRIWNLQTLAPISV-----L-----VGHQGIITGVNFCPLEV-NGFNYLASTSTDGCIGFWKYKLDIDISKT-V 603 (1915)
Q Consensus 536 gs~DgtIrVWDl~tg~~~~~-----l-----~~h~~~V~sl~fsp~~~-~d~~~L~sgs~DgtI~iWDl~~~~~~~~~-~ 603 (1915)
++.||.|++|++........ + ..+...++.++|.+... ..+.++++++.||+|++|++......... .
T Consensus 85 ~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~ 164 (393)
T d1sq9a_ 85 TSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLT 164 (393)
T ss_dssp EETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTT
T ss_pred EeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceee
Confidence 99999999999864332111 1 12456678888877431 13578999999999999998644221110 0
Q ss_pred cc-----CccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCc---eeEEeccCCCCeeEEEEcCCC
Q psy9598 604 FH-----EPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPL---GILEVEEHSDKVDSIQWSHSH 675 (1915)
Q Consensus 604 ~~-----~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~---~i~~l~~h~~~V~sl~fspdg 675 (1915)
.. ...........+...+.|++|+|++ +|++|+.||+|+|||+....... ....+.+|...|.+|+|+|+|
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg 243 (393)
T d1sq9a_ 165 LNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQG 243 (393)
T ss_dssp TCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSST
T ss_pred eeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEccccccc
Confidence 00 0001111223445668999999998 89999999999999995322111 112356799999999999999
Q ss_pred CEEEEEeCCCc---EEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECC
Q psy9598 676 LRFVSGSRDGT---ALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAF 752 (1915)
Q Consensus 676 ~~L~sgs~DG~---I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~ 752 (1915)
.+|++|+.|++ |++||+.++.......... ..........+|...|++|+|+|++++|++++. |++|+|||+.
T Consensus 244 ~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~---~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~-D~~v~vWd~~ 319 (393)
T d1sq9a_ 244 SLLAIAHDSNSFGCITLYETEFGERIGSLSVPT---HSSQASLGEFAHSSWVMSLSFNDSGETLCSAGW-DGKLRFWDVK 319 (393)
T ss_dssp TEEEEEEEETTEEEEEEEETTTCCEEEEECBC-----------CCBSBSSCEEEEEECSSSSEEEEEET-TSEEEEEETT
T ss_pred ceeeeecCCCCcceeeecccccceeeeeecccc---ccccceeeeecccCceeeeccCCCCCeeEEECC-CCEEEEEECC
Confidence 99999999875 8999999988765432111 122233445678999999999999999999998 9999999999
Q ss_pred CCceEEEeeCCCCCeE----EEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCE
Q psy9598 753 NGDLVQVLKGHTNEVF----VLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTT 828 (1915)
Q Consensus 753 tg~~i~~l~gH~~~V~----sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~ 828 (1915)
+|+++.++.+|.+.|. .++|++ ++..+++++. ..+|.+..+.. .. + .......
T Consensus 320 ~g~~~~~l~gH~~~v~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~~~~~--~~-------------~----~~~~~~~ 376 (393)
T d1sq9a_ 320 TKERITTLNMHCDDIEIEEDILAVDE-HGDSLAEPGV---FDVKFLKKGWR--SG-------------M----GADLNES 376 (393)
T ss_dssp TTEEEEEEECCGGGCSSGGGCCCBCT-TSCBCSSCCE---EEEEEECTTTS--BS-------------T----TCTTSCE
T ss_pred CCCEEEEECCcCCcccCCccEEEECC-CCCEEEEccc---ceEEECccCce--ec-------------c----ccCCCCE
Confidence 9999999999998875 477888 7777765542 22332222221 00 0 0112456
Q ss_pred EEEEeCCCeEEEEeC
Q psy9598 829 CALTDSYGHLLVYGL 843 (1915)
Q Consensus 829 Lasg~~dG~I~Iwdl 843 (1915)
|++++.|+.|++|.-
T Consensus 377 ~~~~~~d~~ir~~~~ 391 (393)
T d1sq9a_ 377 LCCVCLDRSIRWFRE 391 (393)
T ss_dssp EEEEETTTEEEEEEE
T ss_pred EEEEEcCCeEEEEeC
Confidence 889999999999963
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=2.8e-27 Score=279.05 Aligned_cols=272 Identities=16% Similarity=0.166 Sum_probs=212.3
Q ss_pred eeeeEEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEE
Q psy9598 466 LRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIW 545 (1915)
Q Consensus 466 ~~~~~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVW 545 (1915)
-+++++|.||..+|+||+|+| |+||+.||+|++||+.++ ..+|...|.+++|++++ .|++++.|++|++|
T Consensus 3 ~~~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~-----~~~h~~~V~~~~~~~~~-~~~s~s~D~~v~~w 72 (287)
T d1pgua2 3 DEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDNSKAQ-EYSSISWDDTLKVN 72 (287)
T ss_dssp EEEEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEE-----ECCCCSCEEEEECCSTT-CCEEEETTTEEEET
T ss_pred cceeEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCCC-----CCCCCCCEEEEEecCCC-eEEEEeeccccccc
Confidence 356789999999999999997 999999999999998764 46899999999998765 68999999999999
Q ss_pred ECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEE
Q psy9598 546 NLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSS 625 (1915)
Q Consensus 546 Dl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~ 625 (1915)
++.+.. +...+.++.+++. +..++ .+.++.+.+|+..++..+...... .. +.+
T Consensus 73 ~~~~~~-------~~~~~~~~~~~~~----~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-------------~~--~~~ 125 (287)
T d1pgua2 73 GITKHE-------FGSQPKVASANND----GFTAV-LTNDDDLLILQSFTGDIIKSVRLN-------------SP--GSA 125 (287)
T ss_dssp TEEEEE-------CSSCEEEEEECSS----SEEEE-EETTSEEEEEETTTCCEEEEEECS-------------SC--EEE
T ss_pred cccccc-------cccceeeeeeccC----CceEE-Eeecccceeeeccceeeeeecccc-------------ce--eee
Confidence 975321 3345677888773 34444 555667888988777654333222 22 345
Q ss_pred ECCCCcEEEEEeCCC-eEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecc
Q psy9598 626 FSPGGLFLATGSGDH-HVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDM 704 (1915)
Q Consensus 626 fspdg~~Lasgs~Dg-~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~ 704 (1915)
+++++..+++|+.++ .|++|++.... ........|...|++|+|+|++.+|++|+.||.|++||+.++....
T Consensus 126 ~~~~~~~~~v~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~----- 198 (287)
T d1pgua2 126 VSLSQNYVAVGLEEGNTIQVFKLSDLE--VSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKT----- 198 (287)
T ss_dssp EEECSSEEEEEETTTSCEEEEETTEEE--EEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE-----
T ss_pred eeccCcceeeeccccceeeeeeccccc--eeeeeeeccCCceeEEEeccCccccccccccccccceeeccccccc-----
Confidence 667778888888775 79999983211 1122234578899999999999999999999999999998776332
Q ss_pred cccCCCCccccccccccccEEEEEECCC----------CCEEEEEEecCCeEEEEECCC-CceEEEeeCCCCCeEEEEEc
Q psy9598 705 NTCLPHTKETSDETNKKIKVTMVAWDAS----------DRWVITAINFNFQIKIWDAFN-GDLVQVLKGHTNEVFVLESH 773 (1915)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~V~~va~spd----------g~~L~t~s~~Dg~I~vwD~~t-g~~i~~l~gH~~~V~sl~~s 773 (1915)
.....|...|.+++|+|. +.+|++++. |+.|+|||+.+ +.++..+.+|.+.|++|+|+
T Consensus 199 ----------~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~-D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~ 267 (287)
T d1pgua2 199 ----------SRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSL-DTNIFIYSVKRPMKIIKALNAHKDGVNNLLWE 267 (287)
T ss_dssp ----------CCSCCCSSCEEEEEECCCC------CCSCCEEEEEET-TSCEEEEESSCTTCCEEETTSSTTCEEEEEEE
T ss_pred ----------ccccccccccceeeecccccccccccCCCCeeEeecC-CCeEEEEECCCCCeEEEEeCCCCCCeEEEEEC
Confidence 112346788999999875 467888887 99999999976 66788888999999999999
Q ss_pred cCCCCEEEEEecCceEEEEEC
Q psy9598 774 PFDSRVLLSAGHDGLIIIWDI 794 (1915)
Q Consensus 774 p~dg~~LaSgs~DG~I~IWdl 794 (1915)
| ++ .|+|+|.||+|+||++
T Consensus 268 ~-~~-~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 268 T-PS-TLVSSGADACIKRWNV 286 (287)
T ss_dssp E-TT-EEEEEETTSCEEEEEE
T ss_pred C-CC-EEEEEECCCeEEEEEE
Confidence 9 54 6899999999999997
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=3.3e-26 Score=267.05 Aligned_cols=283 Identities=19% Similarity=0.318 Sum_probs=222.6
Q ss_pred EEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEE
Q psy9598 510 LLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIG 589 (1915)
Q Consensus 510 ~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~ 589 (1915)
.+..+..|...|+|++| +|++||||+.||+|+|||+.+++++.++.+|.+.|++|+|.+ ++|++|+.||+|+
T Consensus 7 ~i~~~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~~~------~~l~s~s~D~~i~ 78 (293)
T d1p22a2 7 RIHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDE------RVIITGSSDSTVR 78 (293)
T ss_dssp CEECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECCS------SEEEEEETTSCEE
T ss_pred EEeccCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeeccc------ceeeccccccccc
Confidence 34455678889998765 789999999999999999999999999999999999999854 7999999999999
Q ss_pred EEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEE
Q psy9598 590 FWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSI 669 (1915)
Q Consensus 590 iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl 669 (1915)
+|++..+......... ......+......++++..++.+.+|++...........+..|...|.++
T Consensus 79 ~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 144 (293)
T d1p22a2 79 VWDVNTGEMLNTLIHH--------------CEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVV 144 (293)
T ss_dssp EEESSSCCEEEEECCC--------------CSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEE
T ss_pred cccccccccccccccc--------------ccccccccccccceeecccccceeEeeccccccccccccccccccccccc
Confidence 9999887543322211 11223445566689999999999999997666566667778899999888
Q ss_pred EEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEE
Q psy9598 670 QWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIW 749 (1915)
Q Consensus 670 ~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vw 749 (1915)
.+.+ ..+++++.|+.|++||+.+++..... .++...+..+.++ +.++++++. ||.|++|
T Consensus 145 ~~~~--~~~~~~s~d~~i~~~d~~~~~~~~~~----------------~~~~~~v~~~~~~--~~~l~~~~~-dg~i~i~ 203 (293)
T d1p22a2 145 DFDD--KYIVSASGDRTIKVWNTSTCEFVRTL----------------NGHKRGIACLQYR--DRLVVSGSS-DNTIRLW 203 (293)
T ss_dssp EEET--TEEEEEETTSEEEEEETTTCCEEEEE----------------ECCSSCEEEEEEE--TTEEEEEET-TSCEEEE
T ss_pred eecc--cccccccCCCceeeecCCCCcEEEEE----------------cccccccccccCC--CCeEEEecC-CCEEEEE
Confidence 8764 47899999999999999988754322 1234456666664 568888888 9999999
Q ss_pred ECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCcccc----ceeeeeeecCCCCcceEEEEEcCC
Q psy9598 750 DAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRG----YKWFHNIVEGQGEGALFDGKWSPD 825 (1915)
Q Consensus 750 D~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~----~~~~~~~~~~~~~~~V~~vafSpd 825 (1915)
|+.++..+..+.+|...|..+. + ++.+|++|+.||.|+|||+.+..... ...+. ....|.+.|++++| +
T Consensus 204 d~~~~~~~~~~~~~~~~v~~~~--~-~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~--~~~~H~~~V~~v~~--d 276 (293)
T d1p22a2 204 DIECGACLRVLEGHEELVRCIR--F-DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLR--TLVEHSGRVFRLQF--D 276 (293)
T ss_dssp ETTTCCEEEEECCCSSCEEEEE--C-CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEE--EECCCSSCCCCEEE--C
T ss_pred ecccceeeeeecccceeeeecc--c-cceEEEEEcCCCEEEEEECCCCccccccCCceeeE--EecCCCCCEEEEEE--c
Confidence 9999999999999999887654 3 66899999999999999986543200 01111 11246788999999 4
Q ss_pred CCEEEEEeCCCeEEEEe
Q psy9598 826 GTTCALTDSYGHLLVYG 842 (1915)
Q Consensus 826 g~~Lasg~~dG~I~Iwd 842 (1915)
+.+||+|+.||.|+|||
T Consensus 277 ~~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 277 EFQIVSSSHDDTILIWD 293 (293)
T ss_dssp SSCEEECCSSSEEEEEC
T ss_pred CCEEEEEecCCEEEEeC
Confidence 67899999999999997
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=2e-26 Score=274.66 Aligned_cols=299 Identities=14% Similarity=0.046 Sum_probs=220.6
Q ss_pred cEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEE---EeecCCCCeEEEEeccCccCCCcEEEEEeCC
Q psy9598 509 KLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPIS---VLVGHQGIITGVNFCPLEVNGFNYLASTSTD 585 (1915)
Q Consensus 509 ~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~---~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~D 585 (1915)
+++..+.+|...|++|+|+|++.+||+||.||+|+|||+.++.... ...+|.+.|++++|+|. ++.+|++|+.|
T Consensus 2 ~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~---~~~~l~sg~~d 78 (342)
T d1yfqa_ 2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDN---TDLQIYVGTVQ 78 (342)
T ss_dssp EEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEES---SSEEEEEEETT
T ss_pred CeEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCC---CCCEEEEcccc
Confidence 4667778999999999999999999999999999999997765433 33479999999999984 35789999999
Q ss_pred CeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCce-eEEeccC--
Q psy9598 586 GCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLG-ILEVEEH-- 662 (1915)
Q Consensus 586 gtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~-i~~l~~h-- 662 (1915)
|+|++|++........... .+........+.+++..+++++.++.+++||++....... ......+
T Consensus 79 ~~v~~w~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~ 147 (342)
T d1yfqa_ 79 GEILKVDLIGSPSFQALTN-----------NEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNT 147 (342)
T ss_dssp SCEEEECSSSSSSEEECBS-----------CCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSS
T ss_pred cceeeeecccccccccccc-----------cccccccccccccccccccccccccccceeeccccccceeeecccccccc
Confidence 9999999987654332221 1223445666777888999999999999999854332222 2222222
Q ss_pred CCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEEC-CCCCEEEEEEe
Q psy9598 663 SDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWD-ASDRWVITAIN 741 (1915)
Q Consensus 663 ~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~s-pdg~~L~t~s~ 741 (1915)
......+.+.+.+..+++++.||.|++|++......... .........+.++.+. .++..+++++.
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 214 (342)
T d1yfqa_ 148 KVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGT-------------IEESGLKYQIRDVALLPKEQEGYACSSI 214 (342)
T ss_dssp SSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCE-------------EEECSCSSCEEEEEECSGGGCEEEEEET
T ss_pred cceeeeeeeeccCCceeeecCCCcEEEEecccCccccee-------------eeecccccceeeeEeecCCCCEEEeecC
Confidence 234556677888999999999999999999866522111 0111223344555554 45667777777
Q ss_pred cCCeEEEEECCCCce---------EE------EeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeee
Q psy9598 742 FNFQIKIWDAFNGDL---------VQ------VLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFH 806 (1915)
Q Consensus 742 ~Dg~I~vwD~~tg~~---------i~------~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~ 806 (1915)
||.+.+|++..... .. ...+|...|++|+|+| ++.+|||||.||.|+|||+.+++. +..+.
T Consensus 215 -dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp-~~~~lasg~~Dg~v~vWD~~~~~~--l~~~~ 290 (342)
T d1yfqa_ 215 -DGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSP-RHKFLYTAGSDGIISCWNLQTRKK--IKNFA 290 (342)
T ss_dssp -TSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECT-TTCCEEEEETTSCEEEEETTTTEE--EEECC
T ss_pred -CCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecC-CccEEEEECCCCEEEEEECCCCcE--EEEec
Confidence 99999999764321 11 1235677899999999 999999999999999999999877 55443
Q ss_pred eeecCCCCcceEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q psy9598 807 NIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLG 844 (1915)
Q Consensus 807 ~~~~~~~~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl~ 844 (1915)
....+..++|+|+|.+||++++|+.+++|...
T Consensus 291 ------~~~~~~~~~~s~~~~~l~~a~sdd~~~~~~~~ 322 (342)
T d1yfqa_ 291 ------KFNEDSVVKIACSDNILCLATSDDTFKTNAAI 322 (342)
T ss_dssp ------CCSSSEEEEEEECSSEEEEEEECTHHHHCSSS
T ss_pred ------CCCCCEEEEEEeCCCEEEEEEcCCcEEEeeee
Confidence 23456678899999999999999988887643
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=2.7e-26 Score=270.63 Aligned_cols=273 Identities=14% Similarity=0.156 Sum_probs=213.8
Q ss_pred CcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCe
Q psy9598 508 GKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGC 587 (1915)
Q Consensus 508 g~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~Dgt 587 (1915)
.+++++|.||..+|++|+|++ |+||+.||+|++||+.++ ..+|...|.++.|++. ..+++++.|++
T Consensus 3 ~~~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~-----~~~h~~~V~~~~~~~~-----~~~~s~s~D~~ 68 (287)
T d1pgua2 3 DEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDNSKA-----QEYSSISWDDT 68 (287)
T ss_dssp EEEEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEE-----ECCCCSCEEEEECCST-----TCCEEEETTTE
T ss_pred cceeEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCCC-----CCCCCCCEEEEEecCC-----CeEEEEeeccc
Confidence 468899999999999999987 999999999999998764 3689999999999863 57899999999
Q ss_pred EEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCee
Q psy9598 588 IGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVD 667 (1915)
Q Consensus 588 I~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~ 667 (1915)
|++|++.... + ...+.++++++++..++++ .++.+.+|+... ...+..+.. ...
T Consensus 69 v~~w~~~~~~------~-------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~-~~~-- 122 (287)
T d1pgua2 69 LKVNGITKHE------F-------------GSQPKVASANNDGFTAVLT-NDDDLLILQSFT---GDIIKSVRL-NSP-- 122 (287)
T ss_dssp EEETTEEEEE------C-------------SSCEEEEEECSSSEEEEEE-TTSEEEEEETTT---CCEEEEEEC-SSC--
T ss_pred cccccccccc------c-------------ccceeeeeeccCCceEEEe-ecccceeeeccc---eeeeeeccc-cce--
Confidence 9999876431 1 2457889999998777765 455678888732 333444432 233
Q ss_pred EEEEcCCCCEEEEEeCCC-cEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeE
Q psy9598 668 SIQWSHSHLRFVSGSRDG-TALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQI 746 (1915)
Q Consensus 668 sl~fspdg~~L~sgs~DG-~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I 746 (1915)
..++++++..+++++.++ .|++|++........ ....+...+++++|+|++.+|++++. ||.|
T Consensus 123 ~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~---------------~~~~~~~~v~~~~~s~~~~~l~~g~~-dg~i 186 (287)
T d1pgua2 123 GSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFD---------------LKTPLRAKPSYISISPSETYIAAGDV-MGKI 186 (287)
T ss_dssp EEEEEECSSEEEEEETTTSCEEEEETTEEEEEEE---------------CSSCCSSCEEEEEECTTSSEEEEEET-TSCE
T ss_pred eeeeeccCcceeeeccccceeeeeeccccceeee---------------eeeccCCceeEEEeccCccccccccc-cccc
Confidence 345667788888888775 799999865442221 11235567999999999999999998 9999
Q ss_pred EEEECCCCceEE-EeeCCCCCeEEEEEccC---------CCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcc
Q psy9598 747 KIWDAFNGDLVQ-VLKGHTNEVFVLESHPF---------DSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGA 816 (1915)
Q Consensus 747 ~vwD~~tg~~i~-~l~gH~~~V~sl~~sp~---------dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~ 816 (1915)
++||+.++..+. .+.+|...|.+++|+|. ++.+|+||+.||+|+|||+..+.. ... ....|.+.
T Consensus 187 ~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~--~~~----~~~~h~~~ 260 (287)
T d1pgua2 187 LLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMK--IIK----ALNAHKDG 260 (287)
T ss_dssp EEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTC--CEE----ETTSSTTC
T ss_pred cceeecccccccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCe--EEE----EeCCCCCC
Confidence 999999988765 46799999999999872 457899999999999999977443 211 22356789
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEeC
Q psy9598 817 LFDGKWSPDGTTCALTDSYGHLLVYGL 843 (1915)
Q Consensus 817 V~~vafSpdg~~Lasg~~dG~I~Iwdl 843 (1915)
|++++|+|++ .|++++.||.|+||++
T Consensus 261 V~~v~~~~~~-~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 261 VNNLLWETPS-TLVSSGADACIKRWNV 286 (287)
T ss_dssp EEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred eEEEEECCCC-EEEEEECCCeEEEEEE
Confidence 9999999986 5888999999999986
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=1.1e-25 Score=279.21 Aligned_cols=298 Identities=14% Similarity=0.151 Sum_probs=216.1
Q ss_pred EEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCce------EEEeecCCCCeEEEEec---cCccCCCcEEEEE
Q psy9598 512 ATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAP------ISVLVGHQGIITGVNFC---PLEVNGFNYLAST 582 (1915)
Q Consensus 512 ~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~------~~~l~~h~~~V~sl~fs---p~~~~d~~~L~sg 582 (1915)
...++|.+.|.+|++++ ++|+|||.|++|+|||..+... ......|...+..+.+. +....+..+++++
T Consensus 8 ~~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 85 (393)
T d1sq9a_ 8 NAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATT 85 (393)
T ss_dssp EESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEE
T ss_pred ecCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEE
Confidence 34579999999999875 5999999999999999866432 23333455444333221 1111234578899
Q ss_pred eCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCC-----CcEEEEEeCCCeEEEEEecCCCC-----
Q psy9598 583 STDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPG-----GLFLATGSGDHHVRVYKMDGVDS----- 652 (1915)
Q Consensus 583 s~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspd-----g~~Lasgs~Dg~I~IwDl~~~~~----- 652 (1915)
+.||.|++|++.................. ...+...+..++|.++ +.++++++.||.|++|++.....
T Consensus 86 ~~dg~v~~w~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~ 163 (393)
T d1sq9a_ 86 SFSGDLLFYRITREDETKKVIFEKLDLLD--SDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSL 163 (393)
T ss_dssp ETTSCEEEEEEEECTTTCCEEEEEECCSC--TTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHT
T ss_pred eCCCcEEEEEccCCCceeeeeccccceee--eccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCccccee
Confidence 99999999998766543333222111111 1123345677777765 46899999999999999842210
Q ss_pred ---Cc-------eeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccc
Q psy9598 653 ---PL-------GILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKI 722 (1915)
Q Consensus 653 ---~~-------~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 722 (1915)
.. .......+...+.+++|+|++ +|++|+.||+|+|||+.+++...... ......+|..
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~----------~~~~l~~h~~ 232 (393)
T d1sq9a_ 164 TLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFE----------SQHSMINNSN 232 (393)
T ss_dssp TTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEE----------CCC---CCCC
T ss_pred eeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccc----------cccccccccc
Confidence 00 111123456678999999998 89999999999999999887554321 1122345888
Q ss_pred cEEEEEECCCCCEEEEEEecCC---eEEEEECCCCceEEEee-------------CCCCCeEEEEEccCCCCEEEEEecC
Q psy9598 723 KVTMVAWDASDRWVITAINFNF---QIKIWDAFNGDLVQVLK-------------GHTNEVFVLESHPFDSRVLLSAGHD 786 (1915)
Q Consensus 723 ~V~~va~spdg~~L~t~s~~Dg---~I~vwD~~tg~~i~~l~-------------gH~~~V~sl~~sp~dg~~LaSgs~D 786 (1915)
.|++|+|+|+|.+|++++. |+ .|++||+.++.++..+. +|.+.|++|+|+| ++++|+|||.|
T Consensus 233 ~V~~l~~spdg~~l~sgs~-D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fsp-d~~~l~S~s~D 310 (393)
T d1sq9a_ 233 SIRSVKFSPQGSLLAIAHD-SNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFND-SGETLCSAGWD 310 (393)
T ss_dssp CEEEEEECSSTTEEEEEEE-ETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECS-SSSEEEEEETT
T ss_pred eEEEcccccccceeeeecC-CCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCC-CCCeeEEECCC
Confidence 9999999999999999998 75 59999999999888774 8999999999999 99999999999
Q ss_pred ceEEEEECCCCccccceeeeeeecCCCCcceE----EEEEcCCCCEEEEEe
Q psy9598 787 GLIIIWDILSSKQRGYKWFHNIVEGQGEGALF----DGKWSPDGTTCALTD 833 (1915)
Q Consensus 787 G~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~----~vafSpdg~~Lasg~ 833 (1915)
|+|+|||+.++++ +..+. .|.+.|. .++|+++|..+++++
T Consensus 311 ~~v~vWd~~~g~~--~~~l~-----gH~~~v~~~~~~~~~~~~~~~~~~~~ 354 (393)
T d1sq9a_ 311 GKLRFWDVKTKER--ITTLN-----MHCDDIEIEEDILAVDEHGDSLAEPG 354 (393)
T ss_dssp SEEEEEETTTTEE--EEEEE-----CCGGGCSSGGGCCCBCTTSCBCSSCC
T ss_pred CEEEEEECCCCCE--EEEEC-----CcCCcccCCccEEEECCCCCEEEEcc
Confidence 9999999999988 77765 3444443 578999999887554
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.94 E-value=2.2e-26 Score=278.96 Aligned_cols=334 Identities=12% Similarity=0.023 Sum_probs=243.0
Q ss_pred EEEEcC-CCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCC--cEEEEECCCCceEEEee
Q psy9598 481 CVLFDK-LGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDK--TIRIWNLQTLAPISVLV 557 (1915)
Q Consensus 481 ~vafsp-dg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~Dg--tIrVWDl~tg~~~~~l~ 557 (1915)
.-.||| ||++||+++. |.|.|||+.++..+.. +|...|.+++|+|||++|++++.+. .|++||+.++.. ..+.
T Consensus 7 ~~~fSP~dG~~~a~~~~-g~v~v~d~~~~~~~~~--~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~-~~~~ 82 (360)
T d1k32a3 7 AEDFSPLDGDLIAFVSR-GQAFIQDVSGTYVLKV--PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKA-EKFE 82 (360)
T ss_dssp EEEEEECGGGCEEEEET-TEEEEECTTSSBEEEC--SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCE-EECC
T ss_pred cccccCCCCCEEEEEEC-CeEEEEECCCCcEEEc--cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcE-EEee
Confidence 456999 9999999874 6999999998887763 6999999999999999998877553 799999988765 4677
Q ss_pred cCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEe
Q psy9598 558 GHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGS 637 (1915)
Q Consensus 558 ~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs 637 (1915)
.|...|.+++|+|+ +.+|++++.++.+.+|++.++...... ..+...+.+++|+|+|.+|+.++
T Consensus 83 ~~~~~v~~~~~spd----g~~l~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~spdg~~la~~~ 146 (360)
T d1k32a3 83 ENLGNVFAMGVDRN----GKFAVVANDRFEIMTVDLETGKPTVIE------------RSREAMITDFTISDNSRFIAYGF 146 (360)
T ss_dssp CCCCSEEEEEECTT----SSEEEEEETTSEEEEEETTTCCEEEEE------------ECSSSCCCCEEECTTSCEEEEEE
T ss_pred CCCceEEeeeeccc----ccccceeccccccccccccccceeeee------------ecccccccchhhccceeeeeeec
Confidence 89999999999994 589999999999999999887543222 23456788999999999998653
Q ss_pred ----------CCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeeccccc
Q psy9598 638 ----------GDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTC 707 (1915)
Q Consensus 638 ----------~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~ 707 (1915)
.++.+++|++.+ .....+..|...+.+++|+|+|++|++++.++.+.+|+..........
T Consensus 147 ~~~~~~~~~~~~~~~~v~d~~~----~~~~~~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~------ 216 (360)
T d1k32a3 147 PLKHGETDGYVMQAIHVYDMEG----RKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEV------ 216 (360)
T ss_dssp EECSSTTCSCCEEEEEEEETTT----TEEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCS------
T ss_pred cccccceeeccccceeeecccc----CceeeecccccccccccccCCCCEEEEEeCCCceEcccccccceeecc------
Confidence 355799999843 233455667888999999999999999999999999987654422100
Q ss_pred CCCCccccccccccccEEEEEECCCCCEEEEEEecC-----CeEEEEECCCCceEEEeeCCCCCeEEEEEccC--CCCEE
Q psy9598 708 LPHTKETSDETNKKIKVTMVAWDASDRWVITAINFN-----FQIKIWDAFNGDLVQVLKGHTNEVFVLESHPF--DSRVL 780 (1915)
Q Consensus 708 ~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~D-----g~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~--dg~~L 780 (1915)
.........+...+..+.|++++..++++.. + ..+..+++..+. ...+..+.+.+..+.+... ...++
T Consensus 217 ---~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (360)
T d1k32a3 217 ---VSKPFVIPLIPGSPNPTKLVPRSMTSEAGEY-DLNDMYKRSSPINVDPGD-YRMIIPLESSILIYSVPVHGEFAAYY 291 (360)
T ss_dssp ---CBEEEEEESSTTCCCGGGCCCGGGSCCCCCC-CCTTGGGGCEECSCCCBC-EEEEEECSSEEEEEECCCCCSHHHHH
T ss_pred ---ccceEEEecccCccccceECCCcCcccccce-eecccccceeecccCcCc-eeEeeecCCCceEEEEEecCCCeeEE
Confidence 0000001112223334556666665544332 1 123344444443 3345556666666666552 23367
Q ss_pred EEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcccccCCCceeecC
Q psy9598 781 LSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGGFKRPQNIPRELFFHT 860 (1915)
Q Consensus 781 aSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl~s~~~~~~l~~~~~F~~ 860 (1915)
++++.++.|++||+.+++. .. +.+.|.+++|||||++|++++.||.|++|++..++... ..+.
T Consensus 292 ~~~~~~~~i~~~d~~~~~~---~~--------~~~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~~~~~------~~~~ 354 (360)
T d1k32a3 292 QGAPEKGVLLKYDVKTRKV---TE--------VKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDER------TVET 354 (360)
T ss_dssp HCCCCCEEEEEEETTTCCE---EE--------EEEEEEEEEECTTSCEEEEEETTSCEEEEESSCTTSCE------ECCC
T ss_pred EecCCCCEEEEEECCCCeE---EE--------ecCCcCEEEECCCCCEEEEEECCCeEEEEECCCCCcce------EEEe
Confidence 8889999999999988664 11 22468999999999999999999999999999886643 3445
Q ss_pred CCCeee
Q psy9598 861 DYRTLN 866 (1915)
Q Consensus 861 d~~~Lv 866 (1915)
|++||+
T Consensus 355 d~~~~~ 360 (360)
T d1k32a3 355 DKRPLV 360 (360)
T ss_dssp CSSCEE
T ss_pred cccccC
Confidence 666664
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.92 E-value=4.6e-23 Score=258.50 Aligned_cols=355 Identities=11% Similarity=0.000 Sum_probs=245.6
Q ss_pred CCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEe-----ecCCCC
Q psy9598 488 GEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVL-----VGHQGI 562 (1915)
Q Consensus 488 g~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l-----~~h~~~ 562 (1915)
+-++++++.||+|+|||+.+++++.++.+|. .+..|+|||||++|++++.|++|++||+.++++.... .+|.+.
T Consensus 32 ~~~~V~~~~dg~v~vwD~~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~ 110 (426)
T d1hzua2 32 NLFSVTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSV 110 (426)
T ss_dssp GEEEEEETTTTEEEEEETTTCSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEE
T ss_pred eEEEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcce
Confidence 3456788899999999999999999999875 5999999999999999999999999999998765433 256666
Q ss_pred eEEEEeccCccCCCcEE-EEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeC-CC
Q psy9598 563 ITGVNFCPLEVNGFNYL-ASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSG-DH 640 (1915)
Q Consensus 563 V~sl~fsp~~~~d~~~L-~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~-Dg 640 (1915)
+.+++|+|+ +++| +++..++++.+||..++........+...... ....+......+.+++++..++.... .+
T Consensus 111 ~~s~~~spD----G~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~s~d~~~~~~~~~~~~ 185 (426)
T d1hzua2 111 ESSKFKGYE----DRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDT-QTYHPEPRVAAIIASHEHPEFIVNVKETG 185 (426)
T ss_dssp EECCSTTCT----TTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSS-CCEESCCCEEEEEECSSSSEEEEEETTTT
T ss_pred EEeeeecCC----CCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccc-eeecCCCceeEEEECCCCCEEEEecCCCC
Confidence 777788884 4665 55668999999999988665444332111111 11123355677888888887776554 45
Q ss_pred eEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEe-CCCcEEEEEccCCceEEeeecccccCCCCcccccccc
Q psy9598 641 HVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGS-RDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETN 719 (1915)
Q Consensus 641 ~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs-~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 719 (1915)
.|.+++.... .........+...+..+.|+|++.+++++. .+..+.+|+..++............
T Consensus 186 ~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 251 (426)
T d1hzua2 186 KVLLVNYKDI--DNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTP------------ 251 (426)
T ss_dssp EEEEEECSSS--SSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCC------------
T ss_pred eEEEEEeccc--cceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcc------------
Confidence 6666665322 222233456788899999999999887766 5567889999888765433211100
Q ss_pred ccccEEEEEECCCCCEEEEEEecCCeEEEEECC-------CCceEEEeeCCCCCeEEEEEccCCCCEEEE-------Eec
Q psy9598 720 KKIKVTMVAWDASDRWVITAINFNFQIKIWDAF-------NGDLVQVLKGHTNEVFVLESHPFDSRVLLS-------AGH 785 (1915)
Q Consensus 720 ~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~-------tg~~i~~l~gH~~~V~sl~~sp~dg~~LaS-------gs~ 785 (1915)
+............+...++....++.+.+|+.. .++++..+.+|...+..++|+| ++.+|++ ++.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sP-dg~~l~v~~~~~~s~~~ 330 (426)
T d1hzua2 252 HPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHP-KSSHLYVDTTFNPDARI 330 (426)
T ss_dssp CCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCT-TCSEEEECCTTCSSHHH
T ss_pred cccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCC-CCceEEEeecCCCCccc
Confidence 111111111111122222222225666666654 3578899999999999999999 9999984 566
Q ss_pred CceEEEEECCCCccccceeeeee----ecCCCCcceEEEEEcCCCCEEEEE-----eCCCeEEEEeCCCCcccccCCCce
Q psy9598 786 DGLIIIWDILSSKQRGYKWFHNI----VEGQGEGALFDGKWSPDGTTCALT-----DSYGHLLVYGLGGFKRPQNIPREL 856 (1915)
Q Consensus 786 DG~I~IWdl~s~~~~~~~~~~~~----~~~~~~~~V~~vafSpdg~~Lasg-----~~dG~I~Iwdl~s~~~~~~l~~~~ 856 (1915)
|++|+|||+.+++. ...+... ....+...|.+++|||||++|+++ +.+|.|.|||..+++....+...-
T Consensus 331 ~~tv~vwd~~t~~~--~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i~~~~ 408 (426)
T d1hzua2 331 SQSVAVFDLKNLDA--KYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDPR 408 (426)
T ss_dssp HTCEEEEETTCTTS--CCEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTEEEEEECCTT
T ss_pred CCEEEEEECCCCCc--CeEEeccchhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECCCCeEEEEECCCC
Confidence 88999999999887 4433211 112345679999999999977543 357889999999998877777655
Q ss_pred eecCCCCee
Q psy9598 857 FFHTDYRTL 865 (1915)
Q Consensus 857 ~F~~d~~~L 865 (1915)
.++|+|.+.
T Consensus 409 ~~tp~Gk~~ 417 (426)
T d1hzua2 409 LITPTGKFN 417 (426)
T ss_dssp CCSEEEEEE
T ss_pred ccCCCceEe
Confidence 666666554
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.91 E-value=3.1e-24 Score=259.83 Aligned_cols=308 Identities=10% Similarity=0.025 Sum_probs=225.1
Q ss_pred cccccCCCeEEEecccCCceeeeEEecCCCCcEEEEEEcCCCCEEEEEECCC--cEEEEECCCCcEEEEEeCCCCCEEEE
Q psy9598 447 EYSGPLSRSLMISSHKYSNLRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDL--LIKLWRARDGKLLATLRGCSGEISDI 524 (1915)
Q Consensus 447 ~~tg~~d~~~~i~~~~~~~~~~~~~l~gH~~~V~~vafspdg~~LaTGs~Dg--~I~IWd~~tg~~~~~l~gH~~~I~~L 524 (1915)
.++....+.+.+|+....... . .+|...|++++|+|||++|++++.+. .|++||+.++... .+.+|...|.++
T Consensus 17 ~~a~~~~g~v~v~d~~~~~~~---~-~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~-~~~~~~~~v~~~ 91 (360)
T d1k32a3 17 LIAFVSRGQAFIQDVSGTYVL---K-VPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE-KFEENLGNVFAM 91 (360)
T ss_dssp CEEEEETTEEEEECTTSSBEE---E-CSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE-ECCCCCCSEEEE
T ss_pred EEEEEECCeEEEEECCCCcEE---E-ccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEE-EeeCCCceEEee
Confidence 333345678888876554433 2 37999999999999999998877553 7999999887765 567899999999
Q ss_pred EEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEe----------CCCeEEEEecc
Q psy9598 525 AIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTS----------TDGCIGFWKYK 594 (1915)
Q Consensus 525 afspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs----------~DgtI~iWDl~ 594 (1915)
+|+|+|++|++++.++.+++|++.++.....+..|...+.+++|+|+ +.+|+.++ .++.+++|++.
T Consensus 92 ~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spd----g~~la~~~~~~~~~~~~~~~~~~~v~d~~ 167 (360)
T d1k32a3 92 GVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDN----SRFIAYGFPLKHGETDGYVMQAIHVYDME 167 (360)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTT----SCEEEEEEEECSSTTCSCCEEEEEEEETT
T ss_pred eecccccccceeccccccccccccccceeeeeecccccccchhhccc----eeeeeeeccccccceeeccccceeeeccc
Confidence 99999999999999999999999999999999999999999999994 47887543 45578999988
Q ss_pred cCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCC----CCceeEEeccCCCCeeEEE
Q psy9598 595 LDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVD----SPLGILEVEEHSDKVDSIQ 670 (1915)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~----~~~~i~~l~~h~~~V~sl~ 670 (1915)
++.... ...+...+.+++|+|+|++|++++.++.+.+|+..... .......+..|...+..+.
T Consensus 168 ~~~~~~-------------~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (360)
T d1k32a3 168 GRKIFA-------------ATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTK 234 (360)
T ss_dssp TTEEEE-------------CSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGG
T ss_pred cCceee-------------ecccccccccccccCCCCEEEEEeCCCceEcccccccceeeccccceEEEecccCccccce
Confidence 764321 12344678899999999999999999999999973221 1122333445566666667
Q ss_pred EcCCCCEEEEEeCCCc---EEEEEc--cCCceEEeeecccccCCCCccccccccccccEEEEEECCCC---CEEEEEEec
Q psy9598 671 WSHSHLRFVSGSRDGT---ALIWYY--KCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASD---RWVITAINF 742 (1915)
Q Consensus 671 fspdg~~L~sgs~DG~---I~IWDl--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg---~~L~t~s~~ 742 (1915)
|++++..++++..+.. .++|.+ ..+.... ...+...+..+.+...+ .++++++.
T Consensus 235 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 296 (360)
T d1k32a3 235 LVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRM-----------------IIPLESSILIYSVPVHGEFAAYYQGAPE- 296 (360)
T ss_dssp CCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEE-----------------EEECSSEEEEEECCCCCSHHHHHHCCCC-
T ss_pred ECCCcCcccccceeecccccceeecccCcCceeE-----------------eeecCCCceEEEEEecCCCeeEEEecCC-
Confidence 7777766665543321 223322 2221111 11122334444444433 34555555
Q ss_pred CCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCcc
Q psy9598 743 NFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQ 799 (1915)
Q Consensus 743 Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~ 799 (1915)
++.|++||+.+++.. .|.+.|.+++|+| ||++|++++.||.|++||+.++..
T Consensus 297 ~~~i~~~d~~~~~~~----~~~~~v~~~~~Sp-DG~~l~~~~~Dg~i~v~d~~~~~~ 348 (360)
T d1k32a3 297 KGVLLKYDVKTRKVT----EVKNNLTDLRLSA-DRKTVMVRKDDGKIYTFPLEKPED 348 (360)
T ss_dssp CEEEEEEETTTCCEE----EEEEEEEEEEECT-TSCEEEEEETTSCEEEEESSCTTS
T ss_pred CCEEEEEECCCCeEE----EecCCcCEEEECC-CCCEEEEEECCCeEEEEECCCCCc
Confidence 899999999887653 3445699999999 999999999999999999998877
|
| >d3d7ca1 a.29.2.1 (A:731-832) GCN5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Bromodomain-like superfamily: Bromodomain family: Bromodomain domain: GCN5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=6.6e-25 Score=214.93 Aligned_cols=100 Identities=31% Similarity=0.499 Sum_probs=96.8
Q ss_pred hHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCccccCCCcCCHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhhcCCC
Q psy9598 117 NWKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQNK 196 (1915)
Q Consensus 117 ~~~~~~~~il~~l~~~~~~~~F~~pvd~~~~pdY~~iIk~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~Lif~N~~~yN~~~ 196 (1915)
.|...|+.||..|++|+.++||+.|||..++||||++|++||||+||++||+++.|.|+++|.+||+|||.||+.||+++
T Consensus 2 ~L~~~l~~il~~l~~~~~s~~F~~pv~~~~~pdY~~~I~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~ 81 (102)
T d3d7ca1 2 QLYTTLKNLLAQIKSHPSAWPFMEPVKKSEAPDYYEVIRFPIDLKTMTERLRSRYYVTRKLFVADLQRVIANCREYNPPD 81 (102)
T ss_dssp HHHHHHHHHHHHHHHSGGGGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCTT
T ss_pred hHHHHHHHHHHHHHhCCCCCccCCCCChhhCcCHHHHcCCccCHHHHHHHhccCccCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred CCHHHHHHHHHHHHHHHHHHH
Q psy9598 197 RSKIYIMTTRLSEFAEEHLRR 217 (1915)
Q Consensus 197 ~s~i~~~a~~l~~~f~~~~~~ 217 (1915)
|.+|.+|..|+++|++++++
T Consensus 82 -s~~~~~A~~l~~~f~~~~ke 101 (102)
T d3d7ca1 82 -SEYCRCASALEKFFYFKLKE 101 (102)
T ss_dssp -SHHHHHHHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999998875
|
| >d1e6ia_ a.29.2.1 (A:) GCN5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Bromodomain-like superfamily: Bromodomain family: Bromodomain domain: GCN5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.90 E-value=1.4e-24 Score=216.04 Aligned_cols=102 Identities=29% Similarity=0.547 Sum_probs=97.9
Q ss_pred hHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCccccCCCcCCHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhhcCCC
Q psy9598 117 NWKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQNK 196 (1915)
Q Consensus 117 ~~~~~~~~il~~l~~~~~~~~F~~pvd~~~~pdY~~iIk~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~Lif~N~~~yN~~~ 196 (1915)
++.+.|..||+.|++|+.++||+.|||...+||||++|++||||+||++||.+|.|.|+++|..||+|||.||+.||+++
T Consensus 3 p~~~~l~~il~~l~~~~~a~pF~~pvd~~~~pdY~~vI~~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~~~ 82 (111)
T d1e6ia_ 3 PHDAAIQNILTELQNHAAAWPFLQPVNKEEVPDYYDFIKEPMDLSTMEIKLESNKYQKMEDFIYDARLVFNNCRMYNGEN 82 (111)
T ss_dssp TTHHHHHHHHHHHHHSTTCGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTT
T ss_pred hHHHHHHHHHHHHHhCCCChhhcCCCCchhCcCHHHHcCCchhHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHCCCC
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999966
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHH
Q psy9598 197 RSKIYIMTTRLSEFAEEHLRRLT 219 (1915)
Q Consensus 197 ~s~i~~~a~~l~~~f~~~~~~~~ 219 (1915)
|.++.+|..|+++|+++|+++.
T Consensus 83 -s~i~~~A~~l~~~f~~~~~~ip 104 (111)
T d1e6ia_ 83 -TSYYKYANRLEKFFNNKVKEIP 104 (111)
T ss_dssp -SHHHHHHHHHHHHHHHHHHTSG
T ss_pred -CHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999998863
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.89 E-value=1.6e-22 Score=253.91 Aligned_cols=358 Identities=9% Similarity=0.012 Sum_probs=259.1
Q ss_pred ccccCCCeEEEecccCCceeeeEEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcE--EEEE---eCCCCCEE
Q psy9598 448 YSGPLSRSLMISSHKYSNLRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKL--LATL---RGCSGEIS 522 (1915)
Q Consensus 448 ~tg~~d~~~~i~~~~~~~~~~~~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~--~~~l---~gH~~~I~ 522 (1915)
++.+-++.+.+|+. ...++..++..| ..+..++|||||++|++++.||+|.+||+.+++. +..+ .+|.+.+.
T Consensus 36 v~~~d~g~v~v~D~--~t~~v~~~~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~ 112 (432)
T d1qksa2 36 VTLRDAGQIALIDG--STYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIET 112 (432)
T ss_dssp EEETTTTEEEEEET--TTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEE
T ss_pred EEEcCCCEEEEEEC--CCCcEEEEEeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEE
Confidence 45667888999864 455666777776 4699999999999999999999999999988763 3333 35666677
Q ss_pred EEEEeCCCCEE-EEEeCCCcEEEEECCCCceEEEeecCC-----------CCeEEEEeccCccCCCcEEEEEeCCCeEEE
Q psy9598 523 DIAIDNRNILL-AAGTVDKTIRIWNLQTLAPISVLVGHQ-----------GIITGVNFCPLEVNGFNYLASTSTDGCIGF 590 (1915)
Q Consensus 523 ~Lafspdg~~L-aSgs~DgtIrVWDl~tg~~~~~l~~h~-----------~~V~sl~fsp~~~~d~~~L~sgs~DgtI~i 590 (1915)
+.+|+|||++| ++++.+++|+|||..+++++..+..|. +....+.++|++ ..++++...++.|.+
T Consensus 113 s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg---~~~~vs~~~~~~i~~ 189 (432)
T d1qksa2 113 SKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYR---PEFIVNVKETGKILL 189 (432)
T ss_dssp CCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSS---SEEEEEETTTTEEEE
T ss_pred ecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCC---CEEEEEEccCCeEEE
Confidence 77889999976 678889999999999999998876543 445677888743 355677788899999
Q ss_pred EecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCC-CeEEEEEecCCCCCceeEEe-----ccCCC
Q psy9598 591 WKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGD-HHVRVYKMDGVDSPLGILEV-----EEHSD 664 (1915)
Q Consensus 591 WDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~D-g~I~IwDl~~~~~~~~i~~l-----~~h~~ 664 (1915)
|+..+........+. +...+.+++|+|+|+++++++.+ +.|.++|... ...+..+ ..|..
T Consensus 190 ~d~~~~~~~~~~~i~-----------~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~---~~~~~~~~~g~~~~~~~ 255 (432)
T d1qksa2 190 VDYTDLNNLKTTEIS-----------AERFLHDGGLDGSHRYFITAANARNKLVVIDTKE---GKLVAIEDTGGQTPHPG 255 (432)
T ss_dssp EETTCSSEEEEEEEE-----------CCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTT---TEEEEEEECSSSSBCCT
T ss_pred EEccCCCcceEEEEc-----------ccCccccceECCCCCEEEEeccccceEEEeeccc---ceEEEEeccCccccccC
Confidence 998776533222221 23567899999999987777654 5788888742 2222222 12444
Q ss_pred CeeEEEEcCCCCEEEEEe-CCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecC
Q psy9598 665 KVDSIQWSHSHLRFVSGS-RDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFN 743 (1915)
Q Consensus 665 ~V~sl~fspdg~~L~sgs-~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~D 743 (1915)
......+...+..+++.. .++.|.+|...... ...+...+....+++++..++++.. +
T Consensus 256 ~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~--------------------~~~~~~~v~~~~~~~~g~~~~~~s~-p 314 (432)
T d1qksa2 256 RGANFVHPTFGPVWATSHMGDDSVALIGTDPEG--------------------HPDNAWKILDSFPALGGGSLFIKTH-P 314 (432)
T ss_dssp TCEEEEETTTEEEEEEEBSSSSEEEEEECCTTT--------------------CTTTBTSEEEEEECSCSCCCCEECC-T
T ss_pred cccceecCCCCceecccccCCceEEeccccccc--------------------ccccccEEEEEEEcCCCCeEEEEec-C
Confidence 455555655555555443 47889999654332 2235567888999999999999988 8
Q ss_pred CeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEc
Q psy9598 744 FQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWS 823 (1915)
Q Consensus 744 g~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafS 823 (1915)
..+++|+..+.. .|.....++++ | |+..|++++.|+.+++|++.++.. + ..+...|.+++||
T Consensus 315 ~~~~lw~~~~~~------~~~~~~~sv~v-p-Dg~~la~~s~d~~~k~w~~~~~~~--l--------~~~~~~v~~~~fS 376 (432)
T d1qksa2 315 NSQYLYVDATLN------PEAEISGSVAV-F-DIKAMTGDGSDPEFKTLPIAEWAG--I--------TEGQPRVVQGEFN 376 (432)
T ss_dssp TCSEEEEECTTC------SSHHHHTCEEE-E-EGGGCCCSSSCCCEEEECHHHHHT--C--------CSSCCEEEEEEEC
T ss_pred CccceeecccCC------CCCCeeeEEEE-E-echhhcccccCCceEecccccccc--c--------CCCCCcEEEeEEC
Confidence 999999865432 34443444554 7 889999999999999999866543 1 1355678999999
Q ss_pred CCCCEEEEEe-----CCCeEEEEeCCCCcccccCCCceeecCCCCe
Q psy9598 824 PDGTTCALTD-----SYGHLLVYGLGGFKRPQNIPRELFFHTDYRT 864 (1915)
Q Consensus 824 pdg~~Lasg~-----~dG~I~Iwdl~s~~~~~~l~~~~~F~~d~~~ 864 (1915)
|||++|+++. .+|.|.|||..+++....+.....++|+|..
T Consensus 377 ~DG~~v~~S~~~~~~~~g~i~i~D~~T~k~~~~i~~~~~~tp~G~~ 422 (432)
T d1qksa2 377 KDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIKDERLVTPTGKF 422 (432)
T ss_dssp TTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECCTTCCSEEEEE
T ss_pred CCCCEEEEEEecCCCCCCcEEEEECCCceEEeEecCCCccCCCeeE
Confidence 9999886664 4689999999999887766665455666544
|
| >d1wuma1 a.29.2.1 (A:715-832) P300/CAF histone acetyltransferase bromodomain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Bromodomain-like superfamily: Bromodomain family: Bromodomain domain: P300/CAF histone acetyltransferase bromodomain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=4.7e-24 Score=214.49 Aligned_cols=105 Identities=28% Similarity=0.493 Sum_probs=100.4
Q ss_pred CCchhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCccccCCCcCCHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhh
Q psy9598 113 KRPFNWKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNY 192 (1915)
Q Consensus 113 ~~~~~~~~~~~~il~~l~~~~~~~~F~~pvd~~~~pdY~~iIk~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~Lif~N~~~y 192 (1915)
..+..+...|..||..|++|+.++||+.||+...+||||+||++||||+||++||++|.|.++++|.+||+|||.||++|
T Consensus 9 ~~~~~l~~~l~~il~~l~~~~~a~~F~~pv~~~~~pdY~~iI~~PmdL~~I~~kl~~~~Y~s~~ef~~Dv~li~~Na~~y 88 (118)
T d1wuma1 9 RDPDQLYSTLKSILQQVKSHQSAWPFMEPVKRTEAPGYYEVIRFPMDLKTMSERLKNRYYVSKKLFMADLQRVFTNCKEY 88 (118)
T ss_dssp CSHHHHHHHHHHHHHHHHHSSSCHHHHSCCCSSSSSSCTTTCSSCCCHHHHHHHHTTTCCCSSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhCCCcCcccCCCChhhCcCHHHHcCChhhHHHHHHHhcccccCchHHHHHHHHHHHHHHHHH
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy9598 193 NQNKRSKIYIMTTRLSEFAEEHLRRL 218 (1915)
Q Consensus 193 N~~~~s~i~~~a~~l~~~f~~~~~~~ 218 (1915)
|+++ |.+|.+|..|+++|+++|+++
T Consensus 89 n~~~-s~~~~~A~~l~~~f~~~~~e~ 113 (118)
T d1wuma1 89 NPPE-SEYYKCANILEKFFFSKIKEA 113 (118)
T ss_dssp SCTT-SSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCC-CHHHHHHHHHHHHHHHHHHHc
Confidence 9976 999999999999999999875
|
| >d3dwya1 a.29.2.1 (A:1084-1197) CREB-binding protein, CBP {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Bromodomain-like superfamily: Bromodomain family: Bromodomain domain: CREB-binding protein, CBP species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=1e-23 Score=210.75 Aligned_cols=108 Identities=36% Similarity=0.635 Sum_probs=100.9
Q ss_pred CchhHHHHHHHHHHHHhcC-CCCCCCCCCCCC--CCCCCccccCCCcCCHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHh
Q psy9598 114 RPFNWKNECREVLETLWVC-PDSEPFRKPVDK--LDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSR 190 (1915)
Q Consensus 114 ~~~~~~~~~~~il~~l~~~-~~~~~F~~pvd~--~~~pdY~~iIk~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~Lif~N~~ 190 (1915)
.+.+|++.|..+|+.|+++ +.++||+.|||. .++||||++|++||||+||++||.+|.|.|+++|.+||+|||.||+
T Consensus 3 ~p~el~~~l~~~l~~l~~~~p~a~pF~~pvd~~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~ 82 (114)
T d3dwya1 3 KPEELRQALMPTLEALYRQDPESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQEPWQYVDDVWLMFNNAW 82 (114)
T ss_dssp CHHHHHHHHHHHHHHHHTCTTTTGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCcCCCccCCCCChhhccCCCHHHHcCCCCCHHHHHHHHHcCccccHHHHHHHHHHHHHHHH
Confidence 3678999999999999987 689999999994 4899999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCHHHHHHHHHHHHHHHHHHHHHHhh
Q psy9598 191 NYNQNKRSKIYIMTTRLSEFAEEHLRRLTVRW 222 (1915)
Q Consensus 191 ~yN~~~~s~i~~~a~~l~~~f~~~~~~~~~~~ 222 (1915)
+||+++ |.+|.+|..|++.|++.+..+...+
T Consensus 83 ~yN~~~-s~~~~~A~~L~~~f~~~~~~i~~~~ 113 (114)
T d3dwya1 83 LYNRKT-SRVYKFCSKLAEVFEQEIDPVMQSL 113 (114)
T ss_dssp HHSCTT-SHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCC-CHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999966 9999999999999999999987653
|
| >d1eqfa1 a.29.2.1 (A:1359-1497) TAFII250 double bromodomain module {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Bromodomain-like superfamily: Bromodomain family: Bromodomain domain: TAFII250 double bromodomain module species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=1.2e-23 Score=217.76 Aligned_cols=105 Identities=26% Similarity=0.455 Sum_probs=100.6
Q ss_pred hHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCccccCCCcCCHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhhcCCC
Q psy9598 117 NWKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQNK 196 (1915)
Q Consensus 117 ~~~~~~~~il~~l~~~~~~~~F~~pvd~~~~pdY~~iIk~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~Lif~N~~~yN~~~ 196 (1915)
.|...|..||+.|.+++.++||+.|||...+||||+||++||||+||++||+++.|.|+++|.+||+|||.||++||+++
T Consensus 26 ~l~~~l~~il~~l~~~~~s~pF~~Pvd~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~ 105 (139)
T d1eqfa1 26 TLSSILESIINDMRDLPNTYPFHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYNGPK 105 (139)
T ss_dssp HHHHHHHHHHHHHHTSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHHHHHcCCCchhhhCCCChhhccCHHHHcCChhhHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 47788999999999999999999999999999999999999999999999999999999999999999999999999966
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhh
Q psy9598 197 RSKIYIMTTRLSEFAEEHLRRLTVRW 222 (1915)
Q Consensus 197 ~s~i~~~a~~l~~~f~~~~~~~~~~~ 222 (1915)
|.||.+|..|+++|+++|+++...+
T Consensus 106 -s~i~~~A~~L~~~~~~~~~~~~~~~ 130 (139)
T d1eqfa1 106 -HSLTQISQSMLDLCDEKLKEKEDKL 130 (139)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred -CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999887665
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.89 E-value=3.7e-22 Score=250.65 Aligned_cols=361 Identities=9% Similarity=-0.097 Sum_probs=253.4
Q ss_pred CCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceE--EEe---ecCCC
Q psy9598 487 LGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPI--SVL---VGHQG 561 (1915)
Q Consensus 487 dg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~--~~l---~~h~~ 561 (1915)
.+-++++.+.||+|.|||..+++++..+..|. .+..++|||||++|++++.|++|++||+.+++.. ..+ .+|.+
T Consensus 31 ~~~~~v~~~d~g~v~v~D~~t~~v~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~ 109 (432)
T d1qksa2 31 ENLFSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARS 109 (432)
T ss_dssp GGEEEEEETTTTEEEEEETTTCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEE
T ss_pred CcEEEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCC
Confidence 33446888999999999999999999998774 6999999999999999999999999999887643 233 34556
Q ss_pred CeEEEEeccCccCCCcE-EEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEE-EEEeCC
Q psy9598 562 IITGVNFCPLEVNGFNY-LASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFL-ATGSGD 639 (1915)
Q Consensus 562 ~V~sl~fsp~~~~d~~~-L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~L-asgs~D 639 (1915)
.+.+..|+| ++++ +++++.+++|++||..++..+.....+........ ..+......+.++++|..+ ++...+
T Consensus 110 ~~~s~~~Sp----DG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~s~dg~~~~vs~~~~ 184 (432)
T d1qksa2 110 IETSKMEGW----EDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQE-YHPEPRVAAILASHYRPEFIVNVKET 184 (432)
T ss_dssp EEECCSTTC----TTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCC-EESCCCEEEEEECSSSSEEEEEETTT
T ss_pred eEEecccCC----CCCEEEEEcCCCCeEEEEeCccccceeeeccCCcccccee-ccCCCceeEEEECCCCCEEEEEEccC
Confidence 666667777 4465 57888999999999999876655543321111111 1234667889999998765 556668
Q ss_pred CeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCC-CcEEEEEccCCceEEeeecccccCCCCccccccc
Q psy9598 640 HHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRD-GTALIWYYKCSQWRFIRLDMNTCLPHTKETSDET 718 (1915)
Q Consensus 640 g~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~D-G~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~ 718 (1915)
+.|.+|+..... ...+..+ .+...+.+++|+|+|+++++++.+ +.+.+||..+.......... ...
T Consensus 185 ~~i~~~d~~~~~-~~~~~~i-~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g-----------~~~ 251 (432)
T d1qksa2 185 GKILLVDYTDLN-NLKTTEI-SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTG-----------GQT 251 (432)
T ss_dssp TEEEEEETTCSS-EEEEEEE-ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECS-----------SSS
T ss_pred CeEEEEEccCCC-cceEEEE-cccCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccC-----------ccc
Confidence 999999984322 1122222 345678899999999988777654 57888888877654432111 011
Q ss_pred cccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCc
Q psy9598 719 NKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSK 798 (1915)
Q Consensus 719 ~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~ 798 (1915)
.+........+...+...++....++.|.+|+..... +..|...|....++| ++..+++++.++++++|...+..
T Consensus 252 ~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~----~~~~~~~v~~~~~~~-~g~~~~~~s~p~~~~lw~~~~~~ 326 (432)
T d1qksa2 252 PHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEG----HPDNAWKILDSFPAL-GGGSLFIKTHPNSQYLYVDATLN 326 (432)
T ss_dssp BCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTT----CTTTBTSEEEEEECS-CSCCCCEECCTTCSEEEEECTTC
T ss_pred cccCcccceecCCCCceecccccCCceEEeccccccc----ccccccEEEEEEEcC-CCCeEEEEecCCccceeecccCC
Confidence 1233334455555555555554447889999876543 346777899999999 88889999999999999876544
Q ss_pred cccceeeeeeecCCCCcceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcccccCC---CceeecCCCCeeeec------C
Q psy9598 799 QRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGGFKRPQNIP---RELFFHTDYRTLNRP------N 869 (1915)
Q Consensus 799 ~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl~s~~~~~~l~---~~~~F~~d~~~Lv~~------~ 869 (1915)
. +.....++++ ||+..|++++.|+.+++|++.++..+..-. .++.|++||+.++.. .
T Consensus 327 ~-------------~~~~~~sv~v-pDg~~la~~s~d~~~k~w~~~~~~~l~~~~~~v~~~~fS~DG~~v~~S~~~~~~~ 392 (432)
T d1qksa2 327 P-------------EAEISGSVAV-FDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQ 392 (432)
T ss_dssp S-------------SHHHHTCEEE-EEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTS
T ss_pred C-------------CCCeeeEEEE-EechhhcccccCCceEecccccccccCCCCCcEEEeEECCCCCEEEEEEecCCCC
Confidence 3 1122234454 899999999999999999987654333222 267899999877422 2
Q ss_pred CCccceeecccCCCCC
Q psy9598 870 GLFEPTYDEVTNLPPH 885 (1915)
Q Consensus 870 ~~~~~v~D~~t~~~p~ 885 (1915)
.+.+.+||..|.....
T Consensus 393 ~g~i~i~D~~T~k~~~ 408 (432)
T d1qksa2 393 ESALVVVDDKTLELKH 408 (432)
T ss_dssp CCEEEEEETTTTEEEE
T ss_pred CCcEEEEECCCceEEe
Confidence 3446789988875433
|
| >d3d7ca1 a.29.2.1 (A:731-832) GCN5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Bromodomain-like superfamily: Bromodomain family: Bromodomain domain: GCN5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=1.2e-23 Score=205.83 Aligned_cols=100 Identities=31% Similarity=0.499 Sum_probs=96.7
Q ss_pred hhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCccccccCccchhhHHhhhcCCCCCCHHHHHHHHHHHHHHhhhhcCCC
Q psy9598 1532 NWKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQNK 1611 (1915)
Q Consensus 1532 ~~~~~~~~ll~~l~~~~~s~~F~~pv~~~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~Dv~lif~Na~~yN~~~ 1611 (1915)
.|...|+.||..|++++.++||+.||++.++||||++|++||||+||++||++|.|.|+++|..||+|||.||+.||+++
T Consensus 2 ~L~~~l~~il~~l~~~~~s~~F~~pv~~~~~pdY~~~I~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~ 81 (102)
T d3d7ca1 2 QLYTTLKNLLAQIKSHPSAWPFMEPVKKSEAPDYYEVIRFPIDLKTMTERLRSRYYVTRKLFVADLQRVIANCREYNPPD 81 (102)
T ss_dssp HHHHHHHHHHHHHHHSGGGGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCTT
T ss_pred hHHHHHHHHHHHHHhCCCCCccCCCCChhhCcCHHHHcCCccCHHHHHHHhccCccCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 57789999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCHHHHHHHHHHHHHHHHHHH
Q psy9598 1612 RSKIYIMTTRLSEFAEEHLRR 1632 (1915)
Q Consensus 1612 ~s~i~~~a~~l~~~f~~~~~~ 1632 (1915)
|.+|.+|..|+++|++++++
T Consensus 82 -s~~~~~A~~l~~~f~~~~ke 101 (102)
T d3d7ca1 82 -SEYCRCASALEKFFYFKLKE 101 (102)
T ss_dssp -SHHHHHHHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999998864
|
| >d1e6ia_ a.29.2.1 (A:) GCN5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Bromodomain-like superfamily: Bromodomain family: Bromodomain domain: GCN5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.88 E-value=2.6e-23 Score=206.84 Aligned_cols=101 Identities=30% Similarity=0.556 Sum_probs=97.8
Q ss_pred hHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCccccccCccchhhHHhhhcCCCCCCHHHHHHHHHHHHHHhhhhcCCCC
Q psy9598 1533 WKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQNKR 1612 (1915)
Q Consensus 1533 ~~~~~~~ll~~l~~~~~s~~F~~pv~~~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~Dv~lif~Na~~yN~~~~ 1612 (1915)
+.+.|..||+.|++++.|+||+.||++.++|+||++|++||||+||++||.+|.|.|+.+|..||+|||.||+.||+++
T Consensus 4 ~~~~l~~il~~l~~~~~a~pF~~pvd~~~~pdY~~vI~~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~~~- 82 (111)
T d1e6ia_ 4 HDAAIQNILTELQNHAAAWPFLQPVNKEEVPDYYDFIKEPMDLSTMEIKLESNKYQKMEDFIYDARLVFNNCRMYNGEN- 82 (111)
T ss_dssp THHHHHHHHHHHHHSTTCGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTT-
T ss_pred HHHHHHHHHHHHHhCCCChhhcCCCCchhCcCHHHHcCCchhHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHCCCC-
Confidence 5688999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CHHHHHHHHHHHHHHHHHHHHH
Q psy9598 1613 SKIYIMTTRLSEFAEEHLRRLT 1634 (1915)
Q Consensus 1613 s~i~~~a~~l~~~f~~~~~~~~ 1634 (1915)
|.++.+|..|+++|+++++++.
T Consensus 83 s~i~~~A~~l~~~f~~~~~~ip 104 (111)
T d1e6ia_ 83 TSYYKYANRLEKFFNNKVKEIP 104 (111)
T ss_dssp SHHHHHHHHHHHHHHHHHHTSG
T ss_pred CHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999998864
|
| >d1eqfa2 a.29.2.1 (A:1498-1625) TAFII250 double bromodomain module {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Bromodomain-like superfamily: Bromodomain family: Bromodomain domain: TAFII250 double bromodomain module species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=3.6e-23 Score=210.65 Aligned_cols=95 Identities=32% Similarity=0.531 Sum_probs=89.6
Q ss_pred HHHhcCCCCCCCCCCCCCCCCCCccccCCCcCCHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHH
Q psy9598 127 ETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQNKRSKIYIMTTR 206 (1915)
Q Consensus 127 ~~l~~~~~~~~F~~pvd~~~~pdY~~iIk~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~Lif~N~~~yN~~~~s~i~~~a~~ 206 (1915)
..|++++.||||++|||...+||||++|++||||+||++||++|.|.|+.+|..||+|||.||+.||+++ |.+|.+|..
T Consensus 20 ~~~~~~p~a~pF~~pVd~~~~PdY~~vIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN~~~-s~i~~~A~~ 98 (128)
T d1eqfa2 20 QKMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPE-SQYTKTAQE 98 (128)
T ss_dssp HTTTTSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHHHcCCCCChhcCCCCcccCcCHHHHcCCcccHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHCCCC-CHHHHHHHH
Confidence 5566788999999999999999999999999999999999999999999999999999999999999976 999999999
Q ss_pred HHHHHHHHHHHHHHhh
Q psy9598 207 LSEFAEEHLRRLTVRW 222 (1915)
Q Consensus 207 l~~~f~~~~~~~~~~~ 222 (1915)
|++.|++.++++...+
T Consensus 99 L~~~~~~~l~~~~~~~ 114 (128)
T d1eqfa2 99 IVNVCYQTLTEYDEHL 114 (128)
T ss_dssp HHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHhHHHH
Confidence 9999999999876655
|
| >d1wuma1 a.29.2.1 (A:715-832) P300/CAF histone acetyltransferase bromodomain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Bromodomain-like superfamily: Bromodomain family: Bromodomain domain: P300/CAF histone acetyltransferase bromodomain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=6.7e-23 Score=205.97 Aligned_cols=106 Identities=27% Similarity=0.485 Sum_probs=100.9
Q ss_pred CCchhhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCccccccCccchhhHHhhhcCCCCCCHHHHHHHHHHHHHHhhhh
Q psy9598 1528 KRPFNWKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNY 1607 (1915)
Q Consensus 1528 ~~~~~~~~~~~~ll~~l~~~~~s~~F~~pv~~~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~Dv~lif~Na~~y 1607 (1915)
..+..+...|..||..|++++.++||+.||++.++|+||++|++||||+||++||++|.|.++++|..||+|||+||+.|
T Consensus 9 ~~~~~l~~~l~~il~~l~~~~~a~~F~~pv~~~~~pdY~~iI~~PmdL~~I~~kl~~~~Y~s~~ef~~Dv~li~~Na~~y 88 (118)
T d1wuma1 9 RDPDQLYSTLKSILQQVKSHQSAWPFMEPVKRTEAPGYYEVIRFPMDLKTMSERLKNRYYVSKKLFMADLQRVFTNCKEY 88 (118)
T ss_dssp CSHHHHHHHHHHHHHHHHHSSSCHHHHSCCCSSSSSSCTTTCSSCCCHHHHHHHHTTTCCCSSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhCCCcCcccCCCChhhCcCHHHHcCChhhHHHHHHHhcccccCchHHHHHHHHHHHHHHHHH
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy9598 1608 NQNKRSKIYIMTTRLSEFAEEHLRRLT 1634 (1915)
Q Consensus 1608 N~~~~s~i~~~a~~l~~~f~~~~~~~~ 1634 (1915)
|+++ |.+|.+|..|+++|.++++++.
T Consensus 89 n~~~-s~~~~~A~~l~~~f~~~~~e~~ 114 (118)
T d1wuma1 89 NPPE-SEYYKCANILEKFFFSKIKEAG 114 (118)
T ss_dssp SCTT-SSHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCC-CHHHHHHHHHHHHHHHHHHHcc
Confidence 9988 9999999999999999998753
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.87 E-value=5.1e-21 Score=239.69 Aligned_cols=335 Identities=10% Similarity=0.008 Sum_probs=226.4
Q ss_pred ccccCCCeEEEecccCCceeeeEEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEE--E---eCCCCCEE
Q psy9598 448 YSGPLSRSLMISSHKYSNLRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLAT--L---RGCSGEIS 522 (1915)
Q Consensus 448 ~tg~~d~~~~i~~~~~~~~~~~~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~--l---~gH~~~I~ 522 (1915)
++...++.+.+|+.. ..+.+.+|.+| ..+..|+|||||++|++++.||+|++||+.++++... + .+|.+.+.
T Consensus 36 V~~~~dg~v~vwD~~--t~~~~~~l~~g-~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~ 112 (426)
T d1hzua2 36 VTLRDAGQIALVDGD--SKKIVKVIDTG-YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVES 112 (426)
T ss_dssp EEETTTTEEEEEETT--TCSEEEEEECC-SSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEE
T ss_pred EEEcCCCEEEEEECC--CCcEEEEEeCC-CCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEE
Confidence 456678999999654 45666788777 4699999999999999999999999999999875433 2 35667778
Q ss_pred EEEEeCCCCEEEEE-eCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccc
Q psy9598 523 DIAIDNRNILLAAG-TVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISK 601 (1915)
Q Consensus 523 ~Lafspdg~~LaSg-s~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~ 601 (1915)
+++|+|||++|+++ ..+++|++||..++.++..+.+|...+..+.|.+.. ....++++.|+...+|.......+..
T Consensus 113 s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~~s~d~~~~~~~~~~~~~i~~ 189 (426)
T d1hzua2 113 SKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEP---RVAAIIASHEHPEFIVNVKETGKVLL 189 (426)
T ss_dssp CCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCC---CEEEEEECSSSSEEEEEETTTTEEEE
T ss_pred eeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCC---ceeEEEECCCCCEEEEecCCCCeEEE
Confidence 88889999987554 578999999999999999998888777666666632 23555666666655555443322222
Q ss_pred eeccCccccccccCCCCCceEEEEECCCCcEEEEEeC-CCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCC---E
Q psy9598 602 TVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSG-DHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHL---R 677 (1915)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~-Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~---~ 677 (1915)
..............++...+..+.|+|++++++++.. +..+.+|+.... ..........+......+.+...+. .
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (426)
T d1hzua2 190 VNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDR-RLSALVDVGKTPHPGRGANFVHPKYGPVW 268 (426)
T ss_dssp EECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTT-EEEEEEECSSCCCCSCCEEEEETTTEEEE
T ss_pred EEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccc-cEEEEeccCCcccccceeeeecCCCCceE
Confidence 1111111111122244567889999999998777764 566888887322 1112222222333333444443333 2
Q ss_pred EEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEE------ecCCeEEEEEC
Q psy9598 678 FVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAI------NFNFQIKIWDA 751 (1915)
Q Consensus 678 L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s------~~Dg~I~vwD~ 751 (1915)
.++.+.|+.+.+|+.....+.. ..........+|...+..++|+|++.+|++.. ..+++|+|||+
T Consensus 269 ~~~~~~d~~v~~~~~~~~~~~~---------~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~ 339 (426)
T d1hzua2 269 STSHLGDGSISLIGTDPKNHPQ---------YAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDL 339 (426)
T ss_dssp EEECTTTCEEEEEECCTTTCTT---------TBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEET
T ss_pred EeccCCCceEEEeecccccccc---------ccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEEC
Confidence 2234467888888766543211 01112233445778899999999999999632 23789999999
Q ss_pred CCCceEEEee---------CCCCCeEEEEEccCCCCEE-EEE----ecCceEEEEECCCCcc
Q psy9598 752 FNGDLVQVLK---------GHTNEVFVLESHPFDSRVL-LSA----GHDGLIIIWDILSSKQ 799 (1915)
Q Consensus 752 ~tg~~i~~l~---------gH~~~V~sl~~sp~dg~~L-aSg----s~DG~I~IWdl~s~~~ 799 (1915)
.+++++..+. .|...|..++|+| ||++| +++ +.+|.|+|||..+.+.
T Consensus 340 ~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSp-DGk~i~vs~~~~~~~~~~i~v~D~~T~k~ 400 (426)
T d1hzua2 340 KNLDAKYQVLPIAEWADLGEGAKRVVQPEYNK-RGDEVWFSVWNGKNDSSALVVVDDKTLKL 400 (426)
T ss_dssp TCTTSCCEEECHHHHHCCCSSCCCEEEEEECS-SSSEEEEEECCCTTSCCEEEEEETTTTEE
T ss_pred CCCCcCeEEeccchhcccCCCCccEEEEEECC-CCCEEEEEEecCCCCCCeEEEEECCCCeE
Confidence 9998776542 4566799999999 88866 443 3588999999999876
|
| >d3dwya1 a.29.2.1 (A:1084-1197) CREB-binding protein, CBP {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Bromodomain-like superfamily: Bromodomain family: Bromodomain domain: CREB-binding protein, CBP species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=1.6e-22 Score=202.00 Aligned_cols=107 Identities=36% Similarity=0.625 Sum_probs=100.4
Q ss_pred CchhhHHHHHHHHHHHHcC-CCCCCCCCCCCCC--CCCCccccccCccchhhHHhhhcCCCCCCHHHHHHHHHHHHHHhh
Q psy9598 1529 RPFNWKNECREVLETLWVC-PDSEPFRKPVDKL--DHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSR 1605 (1915)
Q Consensus 1529 ~~~~~~~~~~~ll~~l~~~-~~s~~F~~pv~~~--~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~Dv~lif~Na~ 1605 (1915)
.+.+|++.|..+|+.|+++ +.|+||+.|||+. ++||||++|++||||+||++||.+|.|.|+++|..||+|||.||+
T Consensus 3 ~p~el~~~l~~~l~~l~~~~p~a~pF~~pvd~~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~ 82 (114)
T d3dwya1 3 KPEELRQALMPTLEALYRQDPESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQEPWQYVDDVWLMFNNAW 82 (114)
T ss_dssp CHHHHHHHHHHHHHHHHTCTTTTGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCcCCCccCCCCChhhccCCCHHHHcCCCCCHHHHHHHHHcCccccHHHHHHHHHHHHHHHH
Confidence 4678999999999999986 6899999999944 899999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy9598 1606 NYNQNKRSKIYIMTTRLSEFAEEHLRRLTVR 1636 (1915)
Q Consensus 1606 ~yN~~~~s~i~~~a~~l~~~f~~~~~~~~~~ 1636 (1915)
.||+++ |.+|.+|..|+++|++++..+...
T Consensus 83 ~yN~~~-s~~~~~A~~L~~~f~~~~~~i~~~ 112 (114)
T d3dwya1 83 LYNRKT-SRVYKFCSKLAEVFEQEIDPVMQS 112 (114)
T ss_dssp HHSCTT-SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCC-CHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999987 999999999999999999998754
|
| >d1eqfa1 a.29.2.1 (A:1359-1497) TAFII250 double bromodomain module {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Bromodomain-like superfamily: Bromodomain family: Bromodomain domain: TAFII250 double bromodomain module species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=3.6e-22 Score=206.43 Aligned_cols=106 Identities=25% Similarity=0.450 Sum_probs=100.6
Q ss_pred hhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCccccccCccchhhHHhhhcCCCCCCHHHHHHHHHHHHHHhhhhcCCC
Q psy9598 1532 NWKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQNK 1611 (1915)
Q Consensus 1532 ~~~~~~~~ll~~l~~~~~s~~F~~pv~~~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~Dv~lif~Na~~yN~~~ 1611 (1915)
.|...|..||+.|+.++.++||+.||+..++||||++|++||||+||++||++|.|.|+++|..||+|||+||+.||+++
T Consensus 26 ~l~~~l~~il~~l~~~~~s~pF~~Pvd~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~ 105 (139)
T d1eqfa1 26 TLSSILESIINDMRDLPNTYPFHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYNGPK 105 (139)
T ss_dssp HHHHHHHHHHHHHHTSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHHHHHcCCCchhhhCCCChhhccCHHHHcCChhhHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 46678999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy9598 1612 RSKIYIMTTRLSEFAEEHLRRLTVRWN 1638 (1915)
Q Consensus 1612 ~s~i~~~a~~l~~~f~~~~~~~~~~~~ 1638 (1915)
|.+|.+|..|+++|+++|+++..++.
T Consensus 106 -s~i~~~A~~L~~~~~~~~~~~~~~~~ 131 (139)
T d1eqfa1 106 -HSLTQISQSMLDLCDEKLKEKEDKLA 131 (139)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred -CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998876543
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.86 E-value=6e-19 Score=207.22 Aligned_cols=272 Identities=11% Similarity=0.051 Sum_probs=209.0
Q ss_pred EEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEE-EEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEecc
Q psy9598 492 VTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILL-AAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCP 570 (1915)
Q Consensus 492 aTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~L-aSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp 570 (1915)
++++.|++|.|||+.+++.+.++... ..+..|+|+|||++| ++++.++.|++||+.++..+..+..|.. +..++|++
T Consensus 6 V~~~~~~~v~v~D~~t~~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~-~~~~~~~~ 83 (301)
T d1l0qa2 6 IANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSS-PQGVAVSP 83 (301)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSS-EEEEEECT
T ss_pred EEECCCCEEEEEECCCCeEEEEEECC-CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeecccc-cccccccc
Confidence 46678999999999999999999754 457899999999987 4667889999999999999999987764 68899998
Q ss_pred CccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEE-EEeCCCeEEEEEecC
Q psy9598 571 LEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLA-TGSGDHHVRVYKMDG 649 (1915)
Q Consensus 571 ~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~La-sgs~Dg~I~IwDl~~ 649 (1915)
++ ...++++..++.+.+|+..++.....+.. ...+.+++|+|+|..++ ++..++.+.+|+..
T Consensus 84 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~- 146 (301)
T d1l0qa2 84 DG---KQVYVTNMASSTLSVIDTTSNTVAGTVKT-------------GKSPLGLALSPDGKKLYVTNNGDKTVSVINTV- 146 (301)
T ss_dssp TS---SEEEEEETTTTEEEEEETTTTEEEEEEEC-------------SSSEEEEEECTTSSEEEEEETTTTEEEEEETT-
T ss_pred cc---ccccccccccceeeecccccceeeeeccc-------------cccceEEEeecCCCeeeeeeccccceeeeecc-
Confidence 43 35666777888999999988754433322 25678999999998775 45567889999983
Q ss_pred CCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCC-CcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEE
Q psy9598 650 VDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRD-GTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVA 728 (1915)
Q Consensus 650 ~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~D-G~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va 728 (1915)
....+..+. +...+.++++++++..+++++.+ +.+.+|+.......... .....+..++
T Consensus 147 --~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~ 206 (301)
T d1l0qa2 147 --TKAVINTVS-VGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTV-----------------KVEAAPSGIA 206 (301)
T ss_dssp --TTEEEEEEE-CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE-----------------ECSSEEEEEE
T ss_pred --ccceeeecc-cCCCceEEEeeccccceeeecccccccccccccceeeeecc-----------------cccCCcceee
Confidence 333344443 44568899999999988887766 55667766655433211 1234467789
Q ss_pred ECCCCCEEEEEEe--cCCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEE-EEEecCceEEEEECCCCccccceee
Q psy9598 729 WDASDRWVITAIN--FNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVL-LSAGHDGLIIIWDILSSKQRGYKWF 805 (1915)
Q Consensus 729 ~spdg~~L~t~s~--~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~L-aSgs~DG~I~IWdl~s~~~~~~~~~ 805 (1915)
|++++..+++++. .++.|++||+.+++++..+..+. .+.+|+|+| ++++| ++++.|++|+|||+.+++. +..+
T Consensus 207 ~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~~-~~~~va~sp-dg~~l~va~~~~~~i~v~D~~t~~~--~~~~ 282 (301)
T d1l0qa2 207 VNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP-DPAGIAVTP-DGKKVYVALSFCNTVSVIDTATNTI--TATM 282 (301)
T ss_dssp ECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS-SEEEEEECT-TSSEEEEEETTTTEEEEEETTTTEE--EEEE
T ss_pred ccccccccccccccceeeeeeeeecCCCeEEEEEcCCC-CEEEEEEeC-CCCEEEEEECCCCeEEEEECCCCeE--EEEE
Confidence 9999999887664 24689999999999998887554 589999999 88865 6778899999999999887 5555
Q ss_pred e
Q psy9598 806 H 806 (1915)
Q Consensus 806 ~ 806 (1915)
.
T Consensus 283 ~ 283 (301)
T d1l0qa2 283 A 283 (301)
T ss_dssp E
T ss_pred e
Confidence 4
|
| >d1eqfa2 a.29.2.1 (A:1498-1625) TAFII250 double bromodomain module {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Bromodomain-like superfamily: Bromodomain family: Bromodomain domain: TAFII250 double bromodomain module species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.84 E-value=9.7e-22 Score=199.99 Aligned_cols=95 Identities=32% Similarity=0.531 Sum_probs=88.7
Q ss_pred HHHHcCCCCCCCCCCCCCCCCCCccccccCccchhhHHhhhcCCCCCCHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHH
Q psy9598 1542 ETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQNKRSKIYIMTTR 1621 (1915)
Q Consensus 1542 ~~l~~~~~s~~F~~pv~~~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~Dv~lif~Na~~yN~~~~s~i~~~a~~ 1621 (1915)
+.+++++.|+||+.|||+.++||||++|++||||+||++||++|.|.|+.+|..||+|||.||+.||+++ |.+|.+|..
T Consensus 20 ~~~~~~p~a~pF~~pVd~~~~PdY~~vIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN~~~-s~i~~~A~~ 98 (128)
T d1eqfa2 20 QKMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPE-SQYTKTAQE 98 (128)
T ss_dssp HTTTTSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHHHcCCCCChhcCCCCcccCcCHHHHcCCcccHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHCCCC-CHHHHHHHH
Confidence 3445678899999999999999999999999999999999999999999999999999999999999987 999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q psy9598 1622 LSEFAEEHLRRLTVRW 1637 (1915)
Q Consensus 1622 l~~~f~~~~~~~~~~~ 1637 (1915)
|+++|++.+.++...+
T Consensus 99 L~~~~~~~l~~~~~~~ 114 (128)
T d1eqfa2 99 IVNVCYQTLTEYDEHL 114 (128)
T ss_dssp HHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHhHHHH
Confidence 9999999998876543
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.84 E-value=8.3e-20 Score=218.85 Aligned_cols=307 Identities=10% Similarity=-0.010 Sum_probs=218.6
Q ss_pred EEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEe-CCCCCEEEEEEeCCCCEE-EEEeCCCcEEEEECCCCceEEEeecC
Q psy9598 482 VLFDKLGEVIVTGADDLLIKLWRARDGKLLATLR-GCSGEISDIAIDNRNILL-AAGTVDKTIRIWNLQTLAPISVLVGH 559 (1915)
Q Consensus 482 vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~-gH~~~I~~Lafspdg~~L-aSgs~DgtIrVWDl~tg~~~~~l~~h 559 (1915)
++|+++++||++++.+++|.|||+.+++++.++. .|...+.+|+|+|||++| ++++.++.|.+||+.+++.+..+...
T Consensus 2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~ 81 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS 81 (346)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC
T ss_pred ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeeccc
Confidence 5789999999999999999999999999999987 456678999999999987 55567899999999999988877543
Q ss_pred C------CCeEEEEeccCccCCCcEEEEEe------------CCCeEEEEecccCccccceeccCccccccccCCCCCce
Q psy9598 560 Q------GIITGVNFCPLEVNGFNYLASTS------------TDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHI 621 (1915)
Q Consensus 560 ~------~~V~sl~fsp~~~~d~~~L~sgs------------~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V 621 (1915)
. ..+..++|+|+ +.+|++++ .++.+.+|+..++......... .....+
T Consensus 82 ~~~~~~~~~~~~v~~s~D----G~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~----------~~~~~~ 147 (346)
T d1jmxb_ 82 SVPGEVGRSMYSFAISPD----GKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTF----------PMPRQV 147 (346)
T ss_dssp CSTTEEEECSSCEEECTT----SSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEE----------ECCSSC
T ss_pred ccccccCCceEEEEEecC----CCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEee----------eccCce
Confidence 2 24668899984 46776654 4677888888776543332221 112345
Q ss_pred EEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEE-EeCCCcEEEEEccCCceEEe
Q psy9598 622 LCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVS-GSRDGTALIWYYKCSQWRFI 700 (1915)
Q Consensus 622 ~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~s-gs~DG~I~IWDl~~~~~~~~ 700 (1915)
..+.+++++.+++++ +.+.+|++. ....+..+..+ ..+..+.++|++..++. +..++.+.+++..
T Consensus 148 ~~~~~~~~~~~~~~~---~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 213 (346)
T d1jmxb_ 148 YLMRAADDGSLYVAG---PDIYKMDVK---TGKYTVALPLR-NWNRKGYSAPDVLYFWPHQSPRHEFSMLYTI------- 213 (346)
T ss_dssp CCEEECTTSCEEEES---SSEEEECTT---TCCEEEEECST-TCCCTTBCCCBCCCCCCCCCTTCEEEEEEEE-------
T ss_pred EEEEecCCCEEEEeC---CcceEEEcc---CCCEEEEEecC-CCccceEEeccccEEEEEecCCCceEeeeee-------
Confidence 566777777766543 458889873 33444444443 34556667888776544 3444555555321
Q ss_pred eecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEE-eeCCCCCeEEEEEccCCCCE
Q psy9598 701 RLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQV-LKGHTNEVFVLESHPFDSRV 779 (1915)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~-l~gH~~~V~sl~~sp~dg~~ 779 (1915)
..+......++++.. ++.+.+|++.++..... +..|...+.++.+++ ++.+
T Consensus 214 --------------------------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 265 (346)
T d1jmxb_ 214 --------------------------ARFKDDKQDPATADL-LYGYLSVDLKTGKTHTQEFADLTELYFTGLRSP-KDPN 265 (346)
T ss_dssp --------------------------EEC-------CCCEE-EEEEEEEETTTCCEEEEEEEECSSCEEEEEECS-SCTT
T ss_pred --------------------------eeeccCceeEeeccC-CceEEEEECCCCceEEEEeecccceeEEEEEeC-CCCE
Confidence 111222333444444 77899999998876554 457888899999999 5565
Q ss_pred EEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcccccCC
Q psy9598 780 LLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGGFKRPQNIP 853 (1915)
Q Consensus 780 LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl~s~~~~~~l~ 853 (1915)
+++++ ++.|.+||+.+++. +..+. ....+.+++|||||++|++++.+|.|.|||+.+++.+.++.
T Consensus 266 ~~~~~-~~~v~v~d~~~~~~--~~~~~------~~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i~~i~ 330 (346)
T d1jmxb_ 266 QIYGV-LNRLAKYDLKQRKL--IKAAN------LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIK 330 (346)
T ss_dssp EEEEE-ESEEEEEETTTTEE--EEEEE------CSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEE
T ss_pred EEEec-CCeEEEEECCCCcE--EEEEc------CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECccCCEEEEEE
Confidence 66555 45899999999887 55544 23468899999999999999999999999999998886654
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.83 E-value=1.4e-19 Score=215.83 Aligned_cols=295 Identities=11% Similarity=0.025 Sum_probs=208.5
Q ss_pred CEEEEEECCCcEEEEECCCCcEEEEEeCC--CCCEEEEEEeCCCCEE-EEEeCCCcEEEEECCCCceEEEeecCCC----
Q psy9598 489 EVIVTGADDLLIKLWRARDGKLLATLRGC--SGEISDIAIDNRNILL-AAGTVDKTIRIWNLQTLAPISVLVGHQG---- 561 (1915)
Q Consensus 489 ~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH--~~~I~~Lafspdg~~L-aSgs~DgtIrVWDl~tg~~~~~l~~h~~---- 561 (1915)
.||+|++.|++|.|||+.+++++.++..+ ...+.+|+|+|||++| ++++.++.|.+||+.+++.+..+..+..
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~ 81 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV 81 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccc
Confidence 58999999999999999999999998653 4568899999999987 5667899999999999999988876543
Q ss_pred -CeEEEEeccCccCCCcEEEEEeC------------CCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECC
Q psy9598 562 -IITGVNFCPLEVNGFNYLASTST------------DGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSP 628 (1915)
Q Consensus 562 -~V~sl~fsp~~~~d~~~L~sgs~------------DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fsp 628 (1915)
.+..++|+|+ +.++++++. ++.+.+||..++........ ...+.+++|++
T Consensus 82 ~~~~~v~~s~d----g~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-------------~~~~~~~~~s~ 144 (337)
T d1pbyb_ 82 KSLFGAALSPD----GKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-------------PRQITMLAWAR 144 (337)
T ss_dssp ECTTCEEECTT----SSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-------------CSSCCCEEECT
T ss_pred cceeeEEEcCC----CcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccc-------------cCCceEEEEcC
Confidence 4567899984 477777663 56777888877654333322 24567899999
Q ss_pred CCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeC-CCcEEEEEccCCceEEeeeccccc
Q psy9598 629 GGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSR-DGTALIWYYKCSQWRFIRLDMNTC 707 (1915)
Q Consensus 629 dg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~-DG~I~IWDl~~~~~~~~~~~~~~~ 707 (1915)
+|.++++++.+ +.+||+. .......+..+.. .....+++++..+..... .+.+.+++.
T Consensus 145 dg~~l~~~~~~--~~~~d~~---~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 203 (337)
T d1pbyb_ 145 DGSKLYGLGRD--LHVMDPE---AGTLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFY--------------- 203 (337)
T ss_dssp TSSCEEEESSS--EEEEETT---TTEEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEE---------------
T ss_pred CCCEEEEEcCC--cceeeee---cCcEEEEeecCCc-cccceecCCcceeeccccccceeeeeee---------------
Confidence 99999998654 6789873 2333333333322 222334455443322222 222222211
Q ss_pred CCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEE-eeCCCCCeEEEEEccCCCCEEEEEecC
Q psy9598 708 LPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQV-LKGHTNEVFVLESHPFDSRVLLSAGHD 786 (1915)
Q Consensus 708 ~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~-l~gH~~~V~sl~~sp~dg~~LaSgs~D 786 (1915)
....+...+..+.. ++.+.+|+..++..... +..|...+..+.+++ ++.+++++ +
T Consensus 204 --------------------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~ 259 (337)
T d1pbyb_ 204 --------------------TARKDIDPADPTAY-RTGLLTMDLETGEMAMREVRIMDVFYFSTAVNP-AKTRAFGA--Y 259 (337)
T ss_dssp --------------------EEBTTSCTTSGGGE-EEEEEEEETTTCCEEEEEEEECSSCEEEEEECT-TSSEEEEE--E
T ss_pred --------------------eeeeccceeeeccc-CccEEEEEcCCCcEEEEEecCCCcceEEEEecc-cceEEEEc--c
Confidence 11111111122222 56789999998876554 456777888999999 88877655 5
Q ss_pred ceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcccccCC
Q psy9598 787 GLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGGFKRPQNIP 853 (1915)
Q Consensus 787 G~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl~s~~~~~~l~ 853 (1915)
+.|++||+.+++. +..+. ....+.+++|+|||++|++++.+|.|.|||+.+++.+..+.
T Consensus 260 ~~i~v~d~~~~~~--~~~~~------~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~~i~ 318 (337)
T d1pbyb_ 260 NVLESFDLEKNAS--IKRVP------LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVD 318 (337)
T ss_dssp SEEEEEETTTTEE--EEEEE------CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEE
T ss_pred ccEEEEECCCCcE--EEEEc------CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEEE
Confidence 8999999999887 55544 34568899999999999999999999999999988877654
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.83 E-value=4.5e-18 Score=199.62 Aligned_cols=273 Identities=10% Similarity=-0.004 Sum_probs=208.2
Q ss_pred EEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEE-EEEeCCCeEEEEecccCccccceeccCccccc
Q psy9598 533 LAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYL-ASTSTDGCIGFWKYKLDIDISKTVFHEPVMFN 611 (1915)
Q Consensus 533 LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L-~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~ 611 (1915)
.++++.|++|.|||+.+++.+.++... ..+.+++|+|+ +++| ++++.++.|.+||+.++..+..+...
T Consensus 5 yV~~~~~~~v~v~D~~t~~~~~~i~~g-~~p~~va~spd----G~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~------ 73 (301)
T d1l0qa2 5 YIANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPD----GTKVYVANAHSNDVSIIDTATNNVIATVPAG------ 73 (301)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTT----SSEEEEEEGGGTEEEEEETTTTEEEEEEECS------
T ss_pred EEEECCCCEEEEEECCCCeEEEEEECC-CCceEEEEeCC----CCEEEEEECCCCEEEEEECCCCceeeeeecc------
Confidence 356678999999999999999988754 45789999994 3655 67778999999999988655443322
Q ss_pred cccCCCCCceEEEEECCCCcEEE-EEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEE-EEeCCCcEEE
Q psy9598 612 ERIRPGNAHILCSSFSPGGLFLA-TGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFV-SGSRDGTALI 689 (1915)
Q Consensus 612 ~~~~~~~~~V~~l~fspdg~~La-sgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~-sgs~DG~I~I 689 (1915)
..+..++|++++..++ ++..++.+.+|+.. .......+. +...+.+++|+++|..++ ++..++.+.+
T Consensus 74 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~dg~~~~~~~~~~~~~~~ 142 (301)
T d1l0qa2 74 -------SSPQGVAVSPDGKQVYVTNMASSTLSVIDTT---SNTVAGTVK-TGKSPLGLALSPDGKKLYVTNNGDKTVSV 142 (301)
T ss_dssp -------SSEEEEEECTTSSEEEEEETTTTEEEEEETT---TTEEEEEEE-CSSSEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred -------ccccccccccccccccccccccceeeecccc---cceeeeecc-ccccceEEEeecCCCeeeeeeccccceee
Confidence 4578899999998655 45567889999983 233344443 455678899999999765 5556888999
Q ss_pred EEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCCCeEE
Q psy9598 690 WYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFV 769 (1915)
Q Consensus 690 WDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~s 769 (1915)
|+..+........ ....+.++++++++..+++++...+.+.+|+.........+..+. .+..
T Consensus 143 ~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 204 (301)
T d1l0qa2 143 INTVTKAVINTVS-----------------VGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEA-APSG 204 (301)
T ss_dssp EETTTTEEEEEEE-----------------CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS-EEEE
T ss_pred eeccccceeeecc-----------------cCCCceEEEeeccccceeeecccccccccccccceeeeecccccC-Ccce
Confidence 9998877544221 233467899999999999988756888899988888777776554 4778
Q ss_pred EEEccCCCCEEEEEec---CceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEE-EEEeCCCeEEEEeCCC
Q psy9598 770 LESHPFDSRVLLSAGH---DGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTC-ALTDSYGHLLVYGLGG 845 (1915)
Q Consensus 770 l~~sp~dg~~LaSgs~---DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~L-asg~~dG~I~Iwdl~s 845 (1915)
++|++ ++..+++++. ++.|.+||+.+++. +..+. ....+.+++|+|||++| ++++.+|.|.|||+.+
T Consensus 205 ~~~~~-~g~~~~v~~~~~~~~~v~v~D~~t~~~--~~~~~------~~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t 275 (301)
T d1l0qa2 205 IAVNP-EGTKAYVTNVDKYFNTVSMIDTGTNKI--TARIP------VGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTAT 275 (301)
T ss_dssp EEECT-TSSEEEEEEECSSCCEEEEEETTTTEE--EEEEE------CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred eeccc-cccccccccccceeeeeeeeecCCCeE--EEEEc------CCCCEEEEEEeCCCCEEEEEECCCCeEEEEECCC
Confidence 89999 7777665543 46899999999877 55544 23568999999999987 5667789999999999
Q ss_pred CcccccCCC
Q psy9598 846 FKRPQNIPR 854 (1915)
Q Consensus 846 ~~~~~~l~~ 854 (1915)
++.+.+++.
T Consensus 276 ~~~~~~~~v 284 (301)
T d1l0qa2 276 NTITATMAV 284 (301)
T ss_dssp TEEEEEEEC
T ss_pred CeEEEEEeC
Confidence 988877754
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.77 E-value=1.1e-17 Score=199.35 Aligned_cols=294 Identities=9% Similarity=-0.012 Sum_probs=208.1
Q ss_pred cccccCCCeEEEecccCCceeeeEEe--cCCCCcEEEEEEcCCCCEE-EEEECCCcEEEEECCCCcEEEEEeCCCC----
Q psy9598 447 EYSGPLSRSLMISSHKYSNLRQHYVN--LGHLSAVFCVLFDKLGEVI-VTGADDLLIKLWRARDGKLLATLRGCSG---- 519 (1915)
Q Consensus 447 ~~tg~~d~~~~i~~~~~~~~~~~~~l--~gH~~~V~~vafspdg~~L-aTGs~Dg~I~IWd~~tg~~~~~l~gH~~---- 519 (1915)
.++++.++++.+|+.... .++..+ .++...+.+++|+|||++| ++++.++.|.+||+.+++++..+..+..
T Consensus 4 ~vt~~~d~~v~v~D~~s~--~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~ 81 (337)
T d1pbyb_ 4 ILAPARPDKLVVIDTEKM--AVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV 81 (337)
T ss_dssp EEEEETTTEEEEEETTTT--EEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred EEEEcCCCEEEEEECCCC--eEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccc
Confidence 356778899999976544 444445 4456678899999999987 4667899999999999999998876644
Q ss_pred -CEEEEEEeCCCCEEEEEe------------CCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCC
Q psy9598 520 -EISDIAIDNRNILLAAGT------------VDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDG 586 (1915)
Q Consensus 520 -~I~~Lafspdg~~LaSgs------------~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~Dg 586 (1915)
.+..++|+|++.+|++++ .++.+.+||..++..+..+.. ...+.+++|+|+ +.++++++.+
T Consensus 82 ~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~d----g~~l~~~~~~- 155 (337)
T d1pbyb_ 82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARD----GSKLYGLGRD- 155 (337)
T ss_dssp ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTT----SSCEEEESSS-
T ss_pred cceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccc-cCCceEEEEcCC----CCEEEEEcCC-
Confidence 345789999999998876 357899999999998888874 456789999994 5888888754
Q ss_pred eEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEE-eCCCeEEEEEecCCCCCceeEEeccCCCC
Q psy9598 587 CIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATG-SGDHHVRVYKMDGVDSPLGILEVEEHSDK 665 (1915)
Q Consensus 587 tI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasg-s~Dg~I~IwDl~~~~~~~~i~~l~~h~~~ 665 (1915)
+.+||..++.......... ...+..+++++..+... ...+.+.+++.
T Consensus 156 -~~~~d~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------ 203 (337)
T d1pbyb_ 156 -LHVMDPEAGTLVEDKPIQS-------------WEAETYAQPDVLAVWNQHESSGVMATPFY------------------ 203 (337)
T ss_dssp -EEEEETTTTEEEEEECSTT-------------TTTTTBCCCBCCCCCCCCTTTTEEEEEEE------------------
T ss_pred -cceeeeecCcEEEEeecCC-------------ccccceecCCcceeeccccccceeeeeee------------------
Confidence 6789988775543332221 01112233333222211 12222222221
Q ss_pred eeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCe
Q psy9598 666 VDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQ 745 (1915)
Q Consensus 666 V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~ 745 (1915)
....+...+..++.++.+.+|++.++...... ...+...+..+++++++.+++++ ++.
T Consensus 204 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~---~~~ 261 (337)
T d1pbyb_ 204 ----TARKDIDPADPTAYRTGLLTMDLETGEMAMRE---------------VRIMDVFYFSTAVNPAKTRAFGA---YNV 261 (337)
T ss_dssp ----EEBTTSCTTSGGGEEEEEEEEETTTCCEEEEE---------------EEECSSCEEEEEECTTSSEEEEE---ESE
T ss_pred ----eeeeccceeeecccCccEEEEEcCCCcEEEEE---------------ecCCCcceEEEEecccceEEEEc---ccc
Confidence 11122223333445667888888877644321 12245567888999999998765 579
Q ss_pred EEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeee
Q psy9598 746 IKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFH 806 (1915)
Q Consensus 746 I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~ 806 (1915)
|++||+.+++++..+. +...+.+++|+| +|.+|++|+.||+|+|||+.+++. +..+.
T Consensus 262 i~v~d~~~~~~~~~~~-~~~~~~~~~~s~-dG~~l~v~~~~~~i~v~D~~t~~~--v~~i~ 318 (337)
T d1pbyb_ 262 LESFDLEKNASIKRVP-LPHSYYSVNVST-DGSTVWLGGALGDLAAYDAETLEK--KGQVD 318 (337)
T ss_dssp EEEEETTTTEEEEEEE-CSSCCCEEEECT-TSCEEEEESBSSEEEEEETTTCCE--EEEEE
T ss_pred EEEEECCCCcEEEEEc-CCCCEEEEEECC-CCCEEEEEeCCCcEEEEECCCCcE--EEEEE
Confidence 9999999999999885 556789999999 999999999999999999999887 66654
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.75 E-value=8e-16 Score=187.03 Aligned_cols=302 Identities=11% Similarity=-0.022 Sum_probs=203.7
Q ss_pred cCCCCcEEEEEEcCCCCEEEEEE-----CCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEe----------
Q psy9598 473 LGHLSAVFCVLFDKLGEVIVTGA-----DDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGT---------- 537 (1915)
Q Consensus 473 ~gH~~~V~~vafspdg~~LaTGs-----~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs---------- 537 (1915)
.+|.+++.+++++|+|+.+++.. ..+.|.|||..+++.+.++.++... .++|+|||++|++++
T Consensus 17 ~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~ 94 (373)
T d2madh_ 17 GAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGK 94 (373)
T ss_pred ccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCcccccc
Confidence 36889999999999999987652 3467999999999999999877654 799999999998875
Q ss_pred CCCcEEEEECCCCceEEEeecCCCCeE-------EEEeccCccCCCcEEEE--EeCCCeEEEEecccCccccceeccCcc
Q psy9598 538 VDKTIRIWNLQTLAPISVLVGHQGIIT-------GVNFCPLEVNGFNYLAS--TSTDGCIGFWKYKLDIDISKTVFHEPV 608 (1915)
Q Consensus 538 ~DgtIrVWDl~tg~~~~~l~~h~~~V~-------sl~fsp~~~~d~~~L~s--gs~DgtI~iWDl~~~~~~~~~~~~~~~ 608 (1915)
.++.|.|||+.+++++..+..+..... .+.|++++ ..++. ...++.+.+|+.......
T Consensus 95 ~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg----~~~~v~~~~~~~~~~~~~~~~~~~~--------- 161 (373)
T d2madh_ 95 RTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNN----ADLLFFQFAAGPAVGLVVQGGSSDD--------- 161 (373)
T ss_pred cceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCC----CcEEEEEEcCCCceEEeeccCCeEE---------
Confidence 357899999999999988877765543 35566632 33333 334566777776654321
Q ss_pred ccccccCCCCCceEEEEECCCCcEE-EEEeCCCeEEEEEecCCCCCceeEE---eccCCCCeeEEEEcCCCCEEEEEeCC
Q psy9598 609 MFNERIRPGNAHILCSSFSPGGLFL-ATGSGDHHVRVYKMDGVDSPLGILE---VEEHSDKVDSIQWSHSHLRFVSGSRD 684 (1915)
Q Consensus 609 ~~~~~~~~~~~~V~~l~fspdg~~L-asgs~Dg~I~IwDl~~~~~~~~i~~---l~~h~~~V~sl~fspdg~~L~sgs~D 684 (1915)
.+.....++.|+|+|..+ ++++.||.+.+|+............ ..++......+.+++++ .++..+.+
T Consensus 162 -------~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 233 (373)
T d2madh_ 162 -------QLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSG-RIVWPVYS 233 (373)
T ss_pred -------EEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCc-eEEEecCC
Confidence 112345688999998754 6788999999999843322111111 01122223445566555 45566788
Q ss_pred CcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEE----------EEEecCCeEEEEECCCC
Q psy9598 685 GTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVI----------TAINFNFQIKIWDAFNG 754 (1915)
Q Consensus 685 G~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~----------t~s~~Dg~I~vwD~~tg 754 (1915)
+.+.+|+................ . ..............+++++++..++ .... ++.|.+||..++
T Consensus 234 ~~v~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~-~~~v~~~d~~t~ 308 (373)
T d2madh_ 234 GKILQADISAAGATNKAPIDALS--G--GRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAA-AKEVTSVTGLVG 308 (373)
T ss_pred ceEEEEEcCCCeEEEEEeecccc--C--cEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecC-CCeEEEEECCCC
Confidence 99999998877643322110000 0 0000011122334455566555444 3344 678999999999
Q ss_pred ceEEEeeCCCCCeEEEEEccCCCC--EEEEEecCceEEEEECCCCccccceeee
Q psy9598 755 DLVQVLKGHTNEVFVLESHPFDSR--VLLSAGHDGLIIIWDILSSKQRGYKWFH 806 (1915)
Q Consensus 755 ~~i~~l~gH~~~V~sl~~sp~dg~--~LaSgs~DG~I~IWdl~s~~~~~~~~~~ 806 (1915)
+.+..+. +...+.+++|+| ||+ ++++++.|++|+|||+.+++. +..+.
T Consensus 309 ~~~~~~~-~~~~~~~~a~sp-DG~~~l~vt~~~d~~v~v~D~~tg~~--~~~~~ 358 (373)
T d2madh_ 309 QTSSQIS-LGHDVDAISVAQ-DGGPDLYALSAGTEVLHIYDAGAGDQ--DQSTV 358 (373)
T ss_pred cEEEEec-CCCCeeEEEECC-CCCEEEEEEeCCCCeEEEEECCCCCE--EEEEC
Confidence 9998875 556789999999 887 457889999999999999988 66554
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.71 E-value=1.9e-15 Score=179.83 Aligned_cols=289 Identities=9% Similarity=0.095 Sum_probs=192.2
Q ss_pred EEEEEECCCcEEEEECCCCcEEE--EEeCCCCCEEEEEEeCCCCEEEEEe-CCCcEEEEECCCCceEEEee---cCCCCe
Q psy9598 490 VIVTGADDLLIKLWRARDGKLLA--TLRGCSGEISDIAIDNRNILLAAGT-VDKTIRIWNLQTLAPISVLV---GHQGII 563 (1915)
Q Consensus 490 ~LaTGs~Dg~I~IWd~~tg~~~~--~l~gH~~~I~~Lafspdg~~LaSgs-~DgtIrVWDl~tg~~~~~l~---~h~~~V 563 (1915)
.+++++.|++|+||++.+...+. ....|.+.|.+|+|+|||++|++++ .|+.|++|++........+. .+...+
T Consensus 6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p 85 (333)
T d1ri6a_ 6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSL 85 (333)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCC
T ss_pred EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCc
Confidence 35777899999999987543222 2235889999999999999986555 58999999998665433332 344567
Q ss_pred EEEEeccCccCCCcEEEEEe-CCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeC-CCe
Q psy9598 564 TGVNFCPLEVNGFNYLASTS-TDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSG-DHH 641 (1915)
Q Consensus 564 ~sl~fsp~~~~d~~~L~sgs-~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~-Dg~ 641 (1915)
.+++|+|+ +++|++++ .++.|.+|+............ ..+...+.++.|+|+++++++++. +..
T Consensus 86 ~~l~~spD----g~~l~v~~~~~~~v~~~~~~~~~~~~~~~~----------~~~~~~~~~v~~s~d~~~~~~~~~~~~~ 151 (333)
T d1ri6a_ 86 THISTDHQ----GQFVFVGSYNAGNVSVTRLEDGLPVGVVDV----------VEGLDGCHSANISPDNRTLWVPALKQDR 151 (333)
T ss_dssp SEEEECTT----SSEEEEEETTTTEEEEEEEETTEEEEEEEE----------ECCCTTBCCCEECTTSSEEEEEEGGGTE
T ss_pred eEEEEcCC----CCEEeecccCCCceeeeccccccceecccc----------cCCCccceEEEeeecceeeeccccccce
Confidence 88999994 47777776 477899998776533222111 123456778899999998887765 457
Q ss_pred EEEEEecCCCCCceeE---EeccCCCCeeEEEEcCCCCEEEEEe-CCCcEEEEEccCCceEEeeecccccCCCCcccccc
Q psy9598 642 VRVYKMDGVDSPLGIL---EVEEHSDKVDSIQWSHSHLRFVSGS-RDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDE 717 (1915)
Q Consensus 642 I~IwDl~~~~~~~~i~---~l~~h~~~V~sl~fspdg~~L~sgs-~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~ 717 (1915)
|.+|+........... ....+......++|++++..++... ..+...+|++................ ...
T Consensus 152 i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~------~~~ 225 (333)
T d1ri6a_ 152 ICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMM------PEN 225 (333)
T ss_dssp EEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECS------CTT
T ss_pred eeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeee------ecC
Confidence 9999985433221111 1223445678899999998876554 55678888765443211110000000 011
Q ss_pred ccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEe---eCCCCCeEEEEEccCCCCEEEEEe-cCceEEEEE
Q psy9598 718 TNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVL---KGHTNEVFVLESHPFDSRVLLSAG-HDGLIIIWD 793 (1915)
Q Consensus 718 ~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l---~gH~~~V~sl~~sp~dg~~LaSgs-~DG~I~IWd 793 (1915)
.........+++++++++++++...++.+.+|++........+ ..+...+.+++|+| +|++|++++ .++.|.||+
T Consensus 226 ~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~sp-DGk~l~va~~~~~~v~v~~ 304 (333)
T d1ri6a_ 226 FSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDH-SGKYLIAAGQKSHHISVYE 304 (333)
T ss_dssp CCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECT-TSSEEEEECTTTCEEEEEE
T ss_pred CCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeC-CCCEEEEEECCCCeEEEEE
Confidence 2234456778999999999988876889999998765433332 23445678899999 999877665 468999996
Q ss_pred C--CCCcc
Q psy9598 794 I--LSSKQ 799 (1915)
Q Consensus 794 l--~s~~~ 799 (1915)
+ .+|.+
T Consensus 305 id~~tG~l 312 (333)
T d1ri6a_ 305 IVGEQGLL 312 (333)
T ss_dssp EETTTTEE
T ss_pred EECCCCcE
Confidence 5 45544
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.71 E-value=1.6e-16 Score=189.68 Aligned_cols=297 Identities=7% Similarity=-0.098 Sum_probs=207.4
Q ss_pred cccccCCCeEEEecccCCceeeeEEec-CCCCcEEEEEEcCCCCEEE-EEECCCcEEEEECCCCcEEEEEeCCCC-----
Q psy9598 447 EYSGPLSRSLMISSHKYSNLRQHYVNL-GHLSAVFCVLFDKLGEVIV-TGADDLLIKLWRARDGKLLATLRGCSG----- 519 (1915)
Q Consensus 447 ~~tg~~d~~~~i~~~~~~~~~~~~~l~-gH~~~V~~vafspdg~~La-TGs~Dg~I~IWd~~tg~~~~~l~gH~~----- 519 (1915)
.++++.++++.+|+.... ++..++. .|...+.+|+|+|||++|+ +++.++.|.+||+.+++.+..+.....
T Consensus 11 l~~~~~~~~v~v~D~~t~--~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~ 88 (346)
T d1jmxb_ 11 MIVTNYPNNLHVVDVASD--TVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVG 88 (346)
T ss_dssp EEEEETTTEEEEEETTTT--EEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEE
T ss_pred EEEEcCCCEEEEEECCCC--CEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecccccccccC
Confidence 346778889999977544 5556664 5667789999999999875 555789999999999999988764332
Q ss_pred -CEEEEEEeCCCCEEEEEe------------CCCcEEEEECCCCceEEEeecC--CCCeEEEEeccCccCCCcEEEEEeC
Q psy9598 520 -EISDIAIDNRNILLAAGT------------VDKTIRIWNLQTLAPISVLVGH--QGIITGVNFCPLEVNGFNYLASTST 584 (1915)
Q Consensus 520 -~I~~Lafspdg~~LaSgs------------~DgtIrVWDl~tg~~~~~l~~h--~~~V~sl~fsp~~~~d~~~L~sgs~ 584 (1915)
.+..++|+|||++|++++ .++.+.+|+..++.....+..+ ...+..+.+++ ++.++++ +
T Consensus 89 ~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-~- 162 (346)
T d1jmxb_ 89 RSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAAD----DGSLYVA-G- 162 (346)
T ss_dssp ECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECT----TSCEEEE-S-
T ss_pred CceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecC----CCEEEEe-C-
Confidence 356789999999988765 4678999999887765544332 23455566665 3344443 2
Q ss_pred CCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEE-EeCCCeEEEEEecCCCCCceeEEeccCC
Q psy9598 585 DGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLAT-GSGDHHVRVYKMDGVDSPLGILEVEEHS 663 (1915)
Q Consensus 585 DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Las-gs~Dg~I~IwDl~~~~~~~~i~~l~~h~ 663 (1915)
+.+.+|++.++..+...... .....+.++|++..++. +..++.+.+++..
T Consensus 163 -~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 213 (346)
T d1jmxb_ 163 -PDIYKMDVKTGKYTVALPLR-------------NWNRKGYSAPDVLYFWPHQSPRHEFSMLYTI--------------- 213 (346)
T ss_dssp -SSEEEECTTTCCEEEEECST-------------TCCCTTBCCCBCCCCCCCCCTTCEEEEEEEE---------------
T ss_pred -CcceEEEccCCCEEEEEecC-------------CCccceEEeccccEEEEEecCCCceEeeeee---------------
Confidence 45888998877654333222 23344567777765544 3444555555541
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecC
Q psy9598 664 DKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFN 743 (1915)
Q Consensus 664 ~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~D 743 (1915)
..+......++++..++.+.+|++.++...... ...+...+..+.+++++.++++.. +
T Consensus 214 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~--~ 271 (346)
T d1jmxb_ 214 -----ARFKDDKQDPATADLLYGYLSVDLKTGKTHTQE---------------FADLTELYFTGLRSPKDPNQIYGV--L 271 (346)
T ss_dssp -----EEC-------CCCEEEEEEEEEETTTCCEEEEE---------------EEECSSCEEEEEECSSCTTEEEEE--E
T ss_pred -----eeeccCceeEeeccCCceEEEEECCCCceEEEE---------------eecccceeEEEEEeCCCCEEEEec--C
Confidence 112233345566677788999999887644322 122455678889999998888766 4
Q ss_pred CeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeee
Q psy9598 744 FQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFH 806 (1915)
Q Consensus 744 g~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~ 806 (1915)
+.|.+||+.+++.+..+. +...+.+++|+| |+.+|++++.||.|+|||+.+++. +..+.
T Consensus 272 ~~v~v~d~~~~~~~~~~~-~~~~~~~va~s~-DG~~l~v~~~d~~v~v~D~~t~~~--i~~i~ 330 (346)
T d1jmxb_ 272 NRLAKYDLKQRKLIKAAN-LDHTYYCVAFDK-KGDKLYLGGTFNDLAVFNPDTLEK--VKNIK 330 (346)
T ss_dssp SEEEEEETTTTEEEEEEE-CSSCCCEEEECS-SSSCEEEESBSSEEEEEETTTTEE--EEEEE
T ss_pred CeEEEEECCCCcEEEEEc-CCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECccCCE--EEEEE
Confidence 689999999999998886 445689999999 999999999999999999999888 65554
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.69 E-value=8e-16 Score=185.33 Aligned_cols=301 Identities=10% Similarity=0.027 Sum_probs=202.7
Q ss_pred EEEEEEcCCCCEEEEEE-----CCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEE----------eCCCcEE
Q psy9598 479 VFCVLFDKLGEVIVTGA-----DDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAG----------TVDKTIR 543 (1915)
Q Consensus 479 V~~vafspdg~~LaTGs-----~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSg----------s~DgtIr 543 (1915)
+.-.+.+|||+.+++.. .++.|.|||..+++++.++..+... .++|||||++|+++ +.|+.|+
T Consensus 4 ~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~ 81 (355)
T d2bbkh_ 4 RILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVE 81 (355)
T ss_dssp CBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEE
T ss_pred cEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCCC--ceEEcCCCCEEEEEeCCCccccccCCCCEEE
Confidence 33446689999998764 3567999999999999999876544 79999999988764 3478999
Q ss_pred EEECCCCceEEEeecCCC-------CeEEEEeccCccCCCcEEEEE--eCCCeEEEEecccCccccceeccCcccccccc
Q psy9598 544 IWNLQTLAPISVLVGHQG-------IITGVNFCPLEVNGFNYLAST--STDGCIGFWKYKLDIDISKTVFHEPVMFNERI 614 (1915)
Q Consensus 544 VWDl~tg~~~~~l~~h~~-------~V~sl~fsp~~~~d~~~L~sg--s~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~ 614 (1915)
|||+.+++.+..+..+.. ....++|+|++ .+++.+ +.+..+.+|+..++..+..+.........
T Consensus 82 v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 154 (355)
T d2bbkh_ 82 VFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDG----KTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIF--- 154 (355)
T ss_dssp EECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTS----SEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEE---
T ss_pred EEECCCCCEEEEEecCCcceeecCCCCceEEEecCC----CeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEe---
Confidence 999999999888765432 34567899844 665555 45678999999888655443322110000
Q ss_pred CCCCCceEEEEECCCCcEEEEE-eCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEcc
Q psy9598 615 RPGNAHILCSSFSPGGLFLATG-SGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYK 693 (1915)
Q Consensus 615 ~~~~~~V~~l~fspdg~~Lasg-s~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~ 693 (1915)
.......+.++++|..++.. ..++.+.+++..... ..+...+..+.+.+++..++.++.+|.+.+|++.
T Consensus 155 --~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 224 (355)
T d2bbkh_ 155 --PTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFH--------PEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLS 224 (355)
T ss_dssp --EEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCS--------CTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECT
T ss_pred --ecCCcceEEEcCCCCEEEEEecCCCeEEEEeccccc--------ceecceeeeccccCCCCeEEEecCCCeEEEEecC
Confidence 01223345667776665543 334445555542111 2344456667788888899999999999999998
Q ss_pred CCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecC---------CeEEEEECCCCceEEEeeCCC
Q psy9598 694 CSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFN---------FQIKIWDAFNGDLVQVLKGHT 764 (1915)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~D---------g~I~vwD~~tg~~i~~l~gH~ 764 (1915)
.+....+...... . ...............+++++++..++.+.... ..|.+||..+++.+..+..+
T Consensus 225 ~~~~~~~~~~~~~--~--~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~- 299 (355)
T d2bbkh_ 225 SGDAKFLPAVEAL--T--EAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG- 299 (355)
T ss_dssp TSSCEECCCEESS--C--HHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-
T ss_pred CCcEEEEeccCCc--c--cceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecCC-
Confidence 8764332110000 0 00000011112234588999999988876522 36999999999999888643
Q ss_pred CCeEEEEEccCCCC--EEEEEecCceEEEEECCCCccccceeee
Q psy9598 765 NEVFVLESHPFDSR--VLLSAGHDGLIIIWDILSSKQRGYKWFH 806 (1915)
Q Consensus 765 ~~V~sl~~sp~dg~--~LaSgs~DG~I~IWdl~s~~~~~~~~~~ 806 (1915)
..+.+++|+| +++ ++++++.|+.|+|||+.+++. +..+.
T Consensus 300 ~~~~~~a~sp-DG~~~l~v~~~~d~~i~v~D~~tg~~--~~~i~ 340 (355)
T d2bbkh_ 300 HEIDSINVSQ-DEKPLLYALSTGDKTLYIHDAESGEE--LRSVN 340 (355)
T ss_dssp EEECEEEECC-SSSCEEEEEETTTTEEEEEETTTCCE--EEEEC
T ss_pred CCEEEEEEcC-CCCeEEEEEECCCCEEEEEECCCCCE--EEEEe
Confidence 4588999999 776 456778899999999999988 66554
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.69 E-value=3.4e-15 Score=177.59 Aligned_cols=284 Identities=15% Similarity=0.160 Sum_probs=192.7
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEe--ecCCCCeEEEEeccCccCCCcEEEE-EeCCCeEEEEecccCccccceeccCcc
Q psy9598 532 LLAAGTVDKTIRIWNLQTLAPISVL--VGHQGIITGVNFCPLEVNGFNYLAS-TSTDGCIGFWKYKLDIDISKTVFHEPV 608 (1915)
Q Consensus 532 ~LaSgs~DgtIrVWDl~tg~~~~~l--~~h~~~V~sl~fsp~~~~d~~~L~s-gs~DgtI~iWDl~~~~~~~~~~~~~~~ 608 (1915)
.+++++.|++|+||++.+...+..+ ..|.+.|.+|+|+|+ +++|++ +..|+.|.+|++.............
T Consensus 6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spD----G~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~-- 79 (333)
T d1ri6a_ 6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPD----KRYLYVGVRPEFRVLAYRIAPDDGALTFAAES-- 79 (333)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTT----SSEEEEEETTTTEEEEEEECTTTCCEEEEEEE--
T ss_pred EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCC----CCEEEEEECCCCeEEEEEEeCCCCcEEEeeec--
Confidence 4577889999999999765444333 368899999999994 477754 5568999999998765433322211
Q ss_pred ccccccCCCCCceEEEEECCCCcEEEEEeC-CCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeC-CCc
Q psy9598 609 MFNERIRPGNAHILCSSFSPGGLFLATGSG-DHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSR-DGT 686 (1915)
Q Consensus 609 ~~~~~~~~~~~~V~~l~fspdg~~Lasgs~-Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~-DG~ 686 (1915)
.+...+.+++|+|+|++|++++. ++.|.+|+.... ..........+...+.++.|++++.++++++. +..
T Consensus 80 -------~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~ 151 (333)
T d1ri6a_ 80 -------ALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDG-LPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDR 151 (333)
T ss_dssp -------ECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETT-EEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTE
T ss_pred -------ccCCCceEEEEcCCCCEEeecccCCCceeeeccccc-cceecccccCCCccceEEEeeecceeeeccccccce
Confidence 12244678999999999988875 678999988432 22333445567778899999999998887774 456
Q ss_pred EEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCc----eEEEee-
Q psy9598 687 ALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGD----LVQVLK- 761 (1915)
Q Consensus 687 I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~----~i~~l~- 761 (1915)
|.+|+............. ............++|++++.+++......+...+|+..... ....+.
T Consensus 152 i~~~~~~~~~~~~~~~~~----------~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 221 (333)
T d1ri6a_ 152 ICLFTVSDDGHLVAQDPA----------EVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDM 221 (333)
T ss_dssp EEEEEECTTSCEEEEEEE----------EEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEEC
T ss_pred eeEEEeccCCcceeeece----------eeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeee
Confidence 899987765422211100 00112334567899999999998887667788888865422 222221
Q ss_pred -----CCCCCeEEEEEccCCCCEEE-EEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEEeC-
Q psy9598 762 -----GHTNEVFVLESHPFDSRVLL-SAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDS- 834 (1915)
Q Consensus 762 -----gH~~~V~sl~~sp~dg~~La-Sgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~- 834 (1915)
........+++++ ++++++ ++..++.+.+|++..... ...+.... ...+.+.+++|+|||++|++++.
T Consensus 222 ~~~~~~~~~~~~~~~~s~-d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~p~~~a~spDGk~l~va~~~ 296 (333)
T d1ri6a_ 222 MPENFSDTRWAADIHITP-DGRHLYACDRTASLITVFSVSEDGS--VLSKEGFQ--PTETQPRGFNVDHSGKYLIAAGQK 296 (333)
T ss_dssp SCTTCCSCCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTSC--CEEEEEEE--ECSSSCCCEEECTTSSEEEEECTT
T ss_pred eecCCCccccceeEEEec-ccCceeeecccCCeEEEEEEcCCCC--EEEEEEEe--CCCCCeeEEEEeCCCCEEEEEECC
Confidence 1234567788999 776555 455678999999977655 33332222 12245778999999999887764
Q ss_pred CCeEEEEeCC
Q psy9598 835 YGHLLVYGLG 844 (1915)
Q Consensus 835 dG~I~Iwdl~ 844 (1915)
++.|.||+++
T Consensus 297 ~~~v~v~~id 306 (333)
T d1ri6a_ 297 SHHISVYEIV 306 (333)
T ss_dssp TCEEEEEEEE
T ss_pred CCeEEEEEEE
Confidence 5889999654
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.66 E-value=2.1e-14 Score=174.35 Aligned_cols=301 Identities=10% Similarity=-0.070 Sum_probs=203.0
Q ss_pred eCCCCCEEEEEEeCCCCEEEEE-----eCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEe------
Q psy9598 515 RGCSGEISDIAIDNRNILLAAG-----TVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTS------ 583 (1915)
Q Consensus 515 ~gH~~~I~~Lafspdg~~LaSg-----s~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs------ 583 (1915)
..+.+++.+++++|||+.++.. +..+.|.|||..+++.+..+..+... .++|+|+ +.+|++++
T Consensus 17 ~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~--~~a~SpD----G~~l~va~~~~~~~ 90 (373)
T d2madh_ 17 GAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHS----GSEFALASTSFSRI 90 (373)
T ss_pred ccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCc--cEEEcCC----CCEEEEEeecCCcc
Confidence 4678899999999999988764 23467999999999999998766543 7999994 47877764
Q ss_pred ----CCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEe--CCCeEEEEEecCCCCCceeE
Q psy9598 584 ----TDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGS--GDHHVRVYKMDGVDSPLGIL 657 (1915)
Q Consensus 584 ----~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs--~Dg~I~IwDl~~~~~~~~i~ 657 (1915)
.++.|.+||+.+++.+............. ......+.|++++..+++.. .++.+.+|+.... .
T Consensus 91 ~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~---~--- 159 (373)
T d2madh_ 91 AKGKRTDYVEVFDPVTFLPIADIELPDAPRFDV-----GPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGS---S--- 159 (373)
T ss_pred cccccceEEEEEECCCCcEEEEEecCCcceeEe-----ccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCC---e---
Confidence 46789999999987654443331111110 11234578899988766554 4567888887321 1
Q ss_pred EeccCCCCeeEEEEcCCCCE-EEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEE
Q psy9598 658 EVEEHSDKVDSIQWSHSHLR-FVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWV 736 (1915)
Q Consensus 658 ~l~~h~~~V~sl~fspdg~~-L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L 736 (1915)
...+...+.++.|+++|.. +++++.||.+.+|+...+.......... ...........+.+++++.++
T Consensus 160 -~~~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~ 228 (373)
T d2madh_ 160 -DDQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAM----------LTAAQNLLTQPAQANKSGRIV 228 (373)
T ss_pred -EEEEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeec----------cccCccceeeeEEECCCceEE
Confidence 2234455678899999875 5788999999999998776543321110 011122334456667766555
Q ss_pred EEEEecCCeEEEEECCCCceEE--EeeCCCC----------CeEEEEEccCCC----------CEEEEEecCceEEEEEC
Q psy9598 737 ITAINFNFQIKIWDAFNGDLVQ--VLKGHTN----------EVFVLESHPFDS----------RVLLSAGHDGLIIIWDI 794 (1915)
Q Consensus 737 ~t~s~~Dg~I~vwD~~tg~~i~--~l~gH~~----------~V~sl~~sp~dg----------~~LaSgs~DG~I~IWdl 794 (1915)
+.+ . ++.+.+|+..++.... .+..+.. ....+++++ ++ ..++++..++.|.+||+
T Consensus 229 ~~~-~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~~~~~~~~~~~~v~~~d~ 305 (373)
T d2madh_ 229 WPV-Y-SGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLK-SSDGIYLLTSEQSAWKLHAAAKEVTSVTG 305 (373)
T ss_pred Eec-C-CceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEec-CCCeEEEecCCCceEEeecCCCeEEEEEC
Confidence 443 4 7889999987765332 2222222 223344444 33 34455667788999999
Q ss_pred CCCccccceeeeeeecCCCCcceEEEEEcCCCCE--EEEEeCCCeEEEEeCCCCcccccCCC
Q psy9598 795 LSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTT--CALTDSYGHLLVYGLGGFKRPQNIPR 854 (1915)
Q Consensus 795 ~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~--Lasg~~dG~I~Iwdl~s~~~~~~l~~ 854 (1915)
.+++. +..+. +...+.+++|+|||+. +++++.+|.|+|||+.+++.+..+..
T Consensus 306 ~t~~~--~~~~~------~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~ 359 (373)
T d2madh_ 306 LVGQT--SSQIS------LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVE 359 (373)
T ss_pred CCCcE--EEEec------CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECC
Confidence 99887 55443 3456889999999984 46788999999999999988777653
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.58 E-value=5.5e-14 Score=168.90 Aligned_cols=288 Identities=9% Similarity=-0.047 Sum_probs=187.8
Q ss_pred cCCCeEEEecccCCceeeeEEecCCCCcEEEEEEcCCCCEEEEE----------ECCCcEEEEECCCCcEEEEEeCCCC-
Q psy9598 451 PLSRSLMISSHKYSNLRQHYVNLGHLSAVFCVLFDKLGEVIVTG----------ADDLLIKLWRARDGKLLATLRGCSG- 519 (1915)
Q Consensus 451 ~~d~~~~i~~~~~~~~~~~~~l~gH~~~V~~vafspdg~~LaTG----------s~Dg~I~IWd~~tg~~~~~l~gH~~- 519 (1915)
.....+.+|+. .+.+++.++.++... .++|||||++|++. +.|+.|.|||+.+++++..+..+..
T Consensus 25 ~~~~~v~v~D~--~tg~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~ 100 (355)
T d2bbkh_ 25 AAVTQQFVIDG--EAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAP 100 (355)
T ss_dssp CSSEEEEEEET--TTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCC
T ss_pred CCcCeEEEEEC--CCCcEEEEEECCCCC--ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcc
Confidence 34445666644 344555666665544 69999999988764 3478999999999999988765432
Q ss_pred ------CEEEEEEeCCCCEEEEEe--CCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEE
Q psy9598 520 ------EISDIAIDNRNILLAAGT--VDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFW 591 (1915)
Q Consensus 520 ------~I~~Lafspdg~~LaSgs--~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iW 591 (1915)
....++|++++.+++.++ .+..+.+|++.++..+..+..+.... .+.. ....+++.+.||...+|
T Consensus 101 ~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~----~~~~~~~~~~dg~~~~v 173 (355)
T d2bbkh_ 101 RFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYH---IFPT----APDTFFMHCRDGSLAKV 173 (355)
T ss_dssp CCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEE---EEEE----ETTEEEEEETTSCEEEE
T ss_pred eeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcce---Eeec----CCcceEEEcCCCCEEEE
Confidence 235689999999887765 46789999999999888876544221 1111 11344555566666665
Q ss_pred ecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccC---------
Q psy9598 592 KYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEH--------- 662 (1915)
Q Consensus 592 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h--------- 662 (1915)
................ ...+...+.+..+++++..++.++.++.+++|++.... ...+.....+
T Consensus 174 ~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~ 246 (355)
T d2bbkh_ 174 AFGTEGTPEITHTEVF------HPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGD-AKFLPAVEALTEAERADGW 246 (355)
T ss_dssp ECCSSSCCEEEECCCC------SCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSS-CEECCCEESSCHHHHHTTE
T ss_pred EecCCCeEEEEecccc------cceecceeeeccccCCCCeEEEecCCCeEEEEecCCCc-EEEEeccCCcccceEeeee
Confidence 5444332221111100 01122334456777888889999999999999985432 2222222222
Q ss_pred -CCCeeEEEEcCCCCEEEEEeCC----------CcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECC
Q psy9598 663 -SDKVDSIQWSHSHLRFVSGSRD----------GTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDA 731 (1915)
Q Consensus 663 -~~~V~sl~fspdg~~L~sgs~D----------G~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~sp 731 (1915)
......+++++++..++..+.+ ..|.+||+.+++..... .....+.+++|+|
T Consensus 247 ~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~-----------------~~~~~~~~~a~sp 309 (355)
T d2bbkh_ 247 RPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKF-----------------EMGHEIDSINVSQ 309 (355)
T ss_dssp EECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEE-----------------EEEEEECEEEECC
T ss_pred eccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEe-----------------cCCCCEEEEEEcC
Confidence 1233557889999887766544 36899999888744321 1234578899999
Q ss_pred CCCE-EEEEEecCCeEEEEECCCCceEEEeeCCCCCeEEEEEc
Q psy9598 732 SDRW-VITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESH 773 (1915)
Q Consensus 732 dg~~-L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~s 773 (1915)
||+. +++++..|+.|+|||+.+++.+.++.++...-.+|.+.
T Consensus 310 DG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~~G~~p~~i~~~ 352 (355)
T d2bbkh_ 310 DEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTA 352 (355)
T ss_dssp SSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSSCCEEECC
T ss_pred CCCeEEEEEECCCCEEEEEECCCCCEEEEEeCcCCCccEEEeC
Confidence 9973 45555558999999999999999998776555555544
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.49 E-value=1.2e-12 Score=164.58 Aligned_cols=354 Identities=11% Similarity=-0.002 Sum_probs=196.8
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeC-----CCCCEEEEEEeCCCCEEEEEeC---------CCcEEEEE
Q psy9598 481 CVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRG-----CSGEISDIAIDNRNILLAAGTV---------DKTIRIWN 546 (1915)
Q Consensus 481 ~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~g-----H~~~I~~Lafspdg~~LaSgs~---------DgtIrVWD 546 (1915)
.+.|.+++.++.. .|+.|.+||+.+++....+.+ |...|.++.|||||++|+.++. ++.+.|||
T Consensus 21 ~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d 98 (470)
T d2bgra1 21 SLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYD 98 (470)
T ss_dssp CCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred CCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEE
Confidence 4668888887764 578899999999988766654 4578999999999999998753 56789999
Q ss_pred CCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCcccccccc------CCCCCc
Q psy9598 547 LQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERI------RPGNAH 620 (1915)
Q Consensus 547 l~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 620 (1915)
+.++. +..+..|...+..+.|+|+ +..||.. .++.+.+|++.++.................. ....+.
T Consensus 99 ~~~~~-~~~l~~~~~~~~~~~~SPD----G~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~ 172 (470)
T d2bgra1 99 LNKRQ-LITEERIPNNTQWVTWSPV----GHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSA 172 (470)
T ss_dssp TTTTE-ECCSSCCCTTEEEEEECSS----TTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSS
T ss_pred CCCCc-ccccccCCccccccccccC----cceeeEe-ecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCC
Confidence 99887 4567889999999999995 4788875 4678999999888654333222111000000 011233
Q ss_pred eEEEEECCCCcEEEEEeCCCe-EEEEEecC---CC-CCce-----------------eE--Ee-----------------
Q psy9598 621 ILCSSFSPGGLFLATGSGDHH-VRVYKMDG---VD-SPLG-----------------IL--EV----------------- 659 (1915)
Q Consensus 621 V~~l~fspdg~~Lasgs~Dg~-I~IwDl~~---~~-~~~~-----------------i~--~l----------------- 659 (1915)
...+.|||||+.|+....|.. |..|.+.. .. .... +. .+
T Consensus 173 ~~~~~wSPDGk~ia~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 252 (470)
T d2bgra1 173 YSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAP 252 (470)
T ss_dssp SBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEEGGGCCSSSCCCEEEECCC
T ss_pred ccccEECCCCCccceeEecCCcCceEEEEeeccCCCCCCeeeeeccccccccCCcceEEEEECCCcceeeeccccccCCc
Confidence 456789999999998865533 44443310 00 0000 00 00
Q ss_pred ---ccCCCCeeEEEEcCCCCEEEEEe-CCC---cEEEE--EccCCceEEeeecccccCCCCccccccccccccEEEEEEC
Q psy9598 660 ---EEHSDKVDSIQWSHSHLRFVSGS-RDG---TALIW--YYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWD 730 (1915)
Q Consensus 660 ---~~h~~~V~sl~fspdg~~L~sgs-~DG---~I~IW--Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~s 730 (1915)
......+..+.|.+++..++... ..+ .+.+| |..++....+.......... ......+.... ..|.
T Consensus 253 ~~~~~~~~~~~~~~w~~~~~~~~~~~~r~~~~~~~~~~~~d~~tg~~~~~~~~~~~~~~~---~~~i~~~~~~~--~~~~ 327 (470)
T d2bgra1 253 ASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMST---TGWVGRFRPSE--PHFT 327 (470)
T ss_dssp HHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECS---SSCSSSSSCCC--CEEC
T ss_pred cccCCCCceEEEEEEcCCCceeEEEeeccCCceEEEEEEecCCCCcEEEEEEEeeeeeec---cceeecccCCC--ceee
Confidence 01112345677777776544332 222 23333 33444433221100000000 00001111111 2333
Q ss_pred CCC-CEEEEEEecCCe--EEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEEecCc----eEEEE--ECCCCcccc
Q psy9598 731 ASD-RWVITAINFNFQ--IKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDG----LIIIW--DILSSKQRG 801 (1915)
Q Consensus 731 pdg-~~L~t~s~~Dg~--I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG----~I~IW--dl~s~~~~~ 801 (1915)
+++ .+++..+..+|. |++|+...+.. ..+..+...|..+ +++....++++++.++ .-.|| ++..+..
T Consensus 328 ~~~~~~~~~~s~~dg~~~ly~~~~~g~~~-~~lt~g~~~v~~~-~~~d~~~iyf~a~~~~~~p~~~~ly~v~~~g~~~-- 403 (470)
T d2bgra1 328 LDGNSFYKIISNEEGYRHICYFQIDKKDC-TFITKGTWEVIGI-EALTSDYLYYISNEYKGMPGGRNLYKIQLSDYTK-- 403 (470)
T ss_dssp TTSSEEEEEEECTTSCEEEEEEETTCSCC-EESCCSSSCEEEE-EEECSSEEEEEESCGGGCTTCBEEEEEETTCTTC--
T ss_pred ecCCCcEEEEeccCcCceeEEEeccCCce-eeeccCCeeEEEE-EEECCCEEEEEEecCCCCcceEEEEEEECCCCCc--
Confidence 433 333333333665 45556554444 4444445567766 3442334445554332 22344 4444333
Q ss_pred ceeeeeeecCCCCcceEEEEEcCCCCEEEEEeC---CCeEEEEeCCCCcccccC
Q psy9598 802 YKWFHNIVEGQGEGALFDGKWSPDGTTCALTDS---YGHLLVYGLGGFKRPQNI 852 (1915)
Q Consensus 802 ~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~---dG~I~Iwdl~s~~~~~~l 852 (1915)
...+. .....+.+.+.+++|||||++++...+ .-.+.||+..+++.+..+
T Consensus 404 ~~~lt-~~~~~~~~~~~s~~fSpdgky~~~~~s~~~~P~~~l~~~~~g~~v~~l 456 (470)
T d2bgra1 404 VTCLS-CELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVL 456 (470)
T ss_dssp EEESS-TTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTTEEEEEE
T ss_pred eeEec-ccccCCCCCEEEEEECCCCCEEEEEecCCCCCeEEEEECCCCCEEEEE
Confidence 22221 111234567899999999999874433 335899999988876655
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.45 E-value=2.4e-12 Score=156.24 Aligned_cols=281 Identities=6% Similarity=-0.129 Sum_probs=188.7
Q ss_pred ccCCCeEEEecccCCceeeeEEecCCCCcEEEEEEcCCCCEEEEEE----------CCCcEEEEECCCCcEEEEEeCCCC
Q psy9598 450 GPLSRSLMISSHKYSNLRQHYVNLGHLSAVFCVLFDKLGEVIVTGA----------DDLLIKLWRARDGKLLATLRGCSG 519 (1915)
Q Consensus 450 g~~d~~~~i~~~~~~~~~~~~~l~gH~~~V~~vafspdg~~LaTGs----------~Dg~I~IWd~~tg~~~~~l~gH~~ 519 (1915)
...++...+|..+.....+..++.+|... .++|+|||++|++++ .|+.|.+||..+++++..+..|..
T Consensus 40 ~~~~g~~~~~~~d~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~ 117 (368)
T d1mdah_ 40 AYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDA 117 (368)
T ss_dssp TTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTS
T ss_pred ccCCCcceEEEEeCCCCcEEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCcc
Confidence 44556667776666666777777777665 589999999999865 367899999999999998865533
Q ss_pred C-------EEEEEEeCCCCEEEEEe-CCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEE
Q psy9598 520 E-------ISDIAIDNRNILLAAGT-VDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFW 591 (1915)
Q Consensus 520 ~-------I~~Lafspdg~~LaSgs-~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iW 591 (1915)
. ...++|+|||++|+++. .++.|.+||+.+++.+..+..+.... +.|. +...++..+.||.+.+|
T Consensus 118 ~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~----~~~~---~~~~~v~~~~Dg~~~~~ 190 (368)
T d1mdah_ 118 PRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFH----IHPG---AAATHYLGSCPASLAAS 190 (368)
T ss_dssp CSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCC----CEEE---ETTEEECCCCTTSCEEE
T ss_pred ceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcce----EccC---CCceEEEEcCCCCEEEE
Confidence 2 34689999999988776 57999999999999998887665432 2222 23677888899999999
Q ss_pred ecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEecc----------
Q psy9598 592 KYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEE---------- 661 (1915)
Q Consensus 592 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~---------- 661 (1915)
++............ .....+...+..+.+.+++..+.+. .+.+.++++... ....+.....
T Consensus 191 ~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~~~~~--~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 261 (368)
T d1mdah_ 191 DLAAAPAAAGIVGA------QCTGAQNCSSQAAQANYPGMLVWAV--ASSILQGDIPAA-GATMKAAIDGNESGRKADNF 261 (368)
T ss_dssp ECCSSCCCCEECCC------CSCTTSCBCSCCEEETTTTEEEECB--SSCCEEEECCSS-CCEEECCCCSSCTHHHHTTE
T ss_pred EecCCceeeeeeec------ccccccccceeecccccCcEEEEec--CCCEEEEeecCC-ceEEEeecccccceeeeeee
Confidence 88766433222111 1122233445567777877665544 345666665321 1111111111
Q ss_pred CCCCeeEEEEcCCCCEEEEEeCC---------CcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCC
Q psy9598 662 HSDKVDSIQWSHSHLRFVSGSRD---------GTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDAS 732 (1915)
Q Consensus 662 h~~~V~sl~fspdg~~L~sgs~D---------G~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spd 732 (1915)
.......+++++++..++....+ ..|.+||..+++..... .....+.+++|+||
T Consensus 262 ~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~-----------------~~~~~~~~~a~spD 324 (368)
T d1mdah_ 262 RSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPI-----------------SNGHDSDAIIAAQD 324 (368)
T ss_dssp EECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECC-----------------EEEEEECEEEECCS
T ss_pred cCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEe-----------------cCCCceeEEEECCC
Confidence 11223457888888877655332 35889999888744311 13356788999999
Q ss_pred CC-EEEEEEecCCeEEEEECCCCceEEEeeCCCC
Q psy9598 733 DR-WVITAINFNFQIKIWDAFNGDLVQVLKGHTN 765 (1915)
Q Consensus 733 g~-~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~ 765 (1915)
|+ +|++++..++.|+|||..+++.+..+.....
T Consensus 325 G~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~g~~ 358 (368)
T d1mdah_ 325 GASDNYANSAGTEVLDIYDAASDQDQSSVELDKG 358 (368)
T ss_dssp SSCEEEEEETTTTEEEEEESSSCEEEEECCCCSC
T ss_pred CCEEEEEEeCCCCeEEEEECCCCCEEEEEECCCC
Confidence 97 4555555589999999999999999875443
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.43 E-value=6.1e-13 Score=161.68 Aligned_cols=302 Identities=10% Similarity=-0.070 Sum_probs=190.4
Q ss_pred CCCCcEEEEEEcCCCCEEEE---EECCC--cEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEe----------C
Q psy9598 474 GHLSAVFCVLFDKLGEVIVT---GADDL--LIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGT----------V 538 (1915)
Q Consensus 474 gH~~~V~~vafspdg~~LaT---Gs~Dg--~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs----------~ 538 (1915)
.+.+....++..++++.... +..+| .|.+||..+++++.++.++... .++|+|||++|++++ .
T Consensus 17 ~~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~ 94 (368)
T d1mdah_ 17 ASDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKR 94 (368)
T ss_dssp CCCCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSE
T ss_pred ccCCCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCCCC--cceECCCCCEEEEEcccCcccccccc
Confidence 34455556667788875332 23344 5777799999999998877765 589999999888765 3
Q ss_pred CCcEEEEECCCCceEEEeecCCC-------CeEEEEeccCccCCCcEEEEEe-CCCeEEEEecccCccccceeccCcccc
Q psy9598 539 DKTIRIWNLQTLAPISVLVGHQG-------IITGVNFCPLEVNGFNYLASTS-TDGCIGFWKYKLDIDISKTVFHEPVMF 610 (1915)
Q Consensus 539 DgtIrVWDl~tg~~~~~l~~h~~-------~V~sl~fsp~~~~d~~~L~sgs-~DgtI~iWDl~~~~~~~~~~~~~~~~~ 610 (1915)
|++|.+||..+++++..+..+.. ....++|+|+ +++|+++. .++.|.+||+.++............
T Consensus 95 d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpD----Gk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~-- 168 (368)
T d1mdah_ 95 TDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCAS----SACLLFFLFGSSAAAGLSVPGASDDQLTKSASCF-- 168 (368)
T ss_dssp EEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTT----SSCEEEEECSSSCEEEEEETTTEEEEEEECSSCC--
T ss_pred CCeEEEEECCCCcEeeeecCCccceecccCCccceEECCC----CCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcc--
Confidence 67899999999999988865432 2346899994 46676665 6799999999988655444332100
Q ss_pred ccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCcee---EEeccCCCCeeEEEEcCCCCEEEEEeCCCcE
Q psy9598 611 NERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGI---LEVEEHSDKVDSIQWSHSHLRFVSGSRDGTA 687 (1915)
Q Consensus 611 ~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i---~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I 687 (1915)
.+ +......+++.+.||.+.+|++......... .....+...+..+.+.+++..+++. .+.+
T Consensus 169 ---------~~----~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~v 233 (368)
T d1mdah_ 169 ---------HI----HPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAV--ASSI 233 (368)
T ss_dssp ---------CC----EEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECB--SSCC
T ss_pred ---------eE----ccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEec--CCCE
Confidence 00 0011223444555566666655322211111 1123345556677788887666544 4567
Q ss_pred EEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecC--------CeEEEEECCCCceEEE
Q psy9598 688 LIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFN--------FQIKIWDAFNGDLVQV 759 (1915)
Q Consensus 688 ~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~D--------g~I~vwD~~tg~~i~~ 759 (1915)
.++++............. ... ..............+++++++..+++....+ ..|.+||..+++.+..
T Consensus 234 ~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~ 309 (368)
T d1mdah_ 234 LQGDIPAAGATMKAAIDG--NES--GRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGP 309 (368)
T ss_dssp EEEECCSSCCEEECCCCS--SCT--HHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEEC
T ss_pred EEEeecCCceEEEeeccc--ccc--eeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEE
Confidence 777766655332211000 000 0000001112233478899998887765412 3599999999999888
Q ss_pred eeCCCCCeEEEEEccCCCC--EEEEEecCceEEEEECCCCccccceeee
Q psy9598 760 LKGHTNEVFVLESHPFDSR--VLLSAGHDGLIIIWDILSSKQRGYKWFH 806 (1915)
Q Consensus 760 l~gH~~~V~sl~~sp~dg~--~LaSgs~DG~I~IWdl~s~~~~~~~~~~ 806 (1915)
+.. ...+.+++|+| |++ ++++++.|+.|+|||..+++. +..+.
T Consensus 310 ~~~-~~~~~~~a~sp-DG~~~ly~s~~~~~~v~v~D~~tgk~--~~~i~ 354 (368)
T d1mdah_ 310 ISN-GHDSDAIIAAQ-DGASDNYANSAGTEVLDIYDAASDQD--QSSVE 354 (368)
T ss_dssp CEE-EEEECEEEECC-SSSCEEEEEETTTTEEEEEESSSCEE--EEECC
T ss_pred ecC-CCceeEEEECC-CCCEEEEEEeCCCCeEEEEECCCCCE--EEEEE
Confidence 764 35688999999 775 456777899999999999988 55544
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.38 E-value=2e-11 Score=153.34 Aligned_cols=329 Identities=8% Similarity=0.012 Sum_probs=190.7
Q ss_pred CCCeEEEecccCCceeee---EEecCCCCcEEEEEEcCCCCEEEEEEC---------CCcEEEEECCCCcEEEEEeCCCC
Q psy9598 452 LSRSLMISSHKYSNLRQH---YVNLGHLSAVFCVLFDKLGEVIVTGAD---------DLLIKLWRARDGKLLATLRGCSG 519 (1915)
Q Consensus 452 ~d~~~~i~~~~~~~~~~~---~~l~gH~~~V~~vafspdg~~LaTGs~---------Dg~I~IWd~~tg~~~~~l~gH~~ 519 (1915)
.++.+.+|+......... ..|.+|...|.++.|||||++|+.++. ++.+.|||+.+++. ..+..|..
T Consensus 34 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~-~~l~~~~~ 112 (470)
T d2bgra1 34 QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQL-ITEERIPN 112 (470)
T ss_dssp SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEE-CCSSCCCT
T ss_pred cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCcc-cccccCCc
Confidence 355677776554433321 244567789999999999999998854 56789999998874 56888999
Q ss_pred CEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecC------------------CCCeEEEEeccCccCCCcEEEE
Q psy9598 520 EISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGH------------------QGIITGVNFCPLEVNGFNYLAS 581 (1915)
Q Consensus 520 ~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h------------------~~~V~sl~fsp~~~~d~~~L~s 581 (1915)
.+..+.|||||+.||... ++.+.+|++.++........+ .+....+.|+|+ +..|++
T Consensus 113 ~~~~~~~SPDG~~ia~~~-~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPD----Gk~ia~ 187 (470)
T d2bgra1 113 NTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPN----GTFLAY 187 (470)
T ss_dssp TEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTT----SSEEEE
T ss_pred cccccccccCcceeeEee-cccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCC----CCccce
Confidence 999999999999999865 778999999988776544322 233466889994 478888
Q ss_pred EeCCCe-EEEEecccC---cccc--ce--ecc---Cc------------------------cccccccCCCCCceEEEEE
Q psy9598 582 TSTDGC-IGFWKYKLD---IDIS--KT--VFH---EP------------------------VMFNERIRPGNAHILCSSF 626 (1915)
Q Consensus 582 gs~Dgt-I~iWDl~~~---~~~~--~~--~~~---~~------------------------~~~~~~~~~~~~~V~~l~f 626 (1915)
...|.+ |..|.+... .... .. ... .. .............+..+.|
T Consensus 188 ~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w 267 (470)
T d2bgra1 188 AQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTW 267 (470)
T ss_dssp EEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEEGGGCCSSSCCCEEEECCCHHHHTSCEEEEEEEE
T ss_pred eEecCCcCceEEEEeeccCCCCCCeeeeeccccccccCCcceEEEEECCCcceeeeccccccCCccccCCCCceEEEEEE
Confidence 776543 444433211 0000 00 000 00 0000001123345677888
Q ss_pred CCCCcEEEEEe-CC---CeEEEEEecCCCCCceeEE-------------eccCCCCeeEEEEcCCCCEEEEEeCCCcEEE
Q psy9598 627 SPGGLFLATGS-GD---HHVRVYKMDGVDSPLGILE-------------VEEHSDKVDSIQWSHSHLRFVSGSRDGTALI 689 (1915)
Q Consensus 627 spdg~~Lasgs-~D---g~I~IwDl~~~~~~~~i~~-------------l~~h~~~V~sl~fspdg~~L~sgs~DG~I~I 689 (1915)
.+++.+++... .. ..+.+|+++... ...... +..|......+.+..++.+++.+..||..+|
T Consensus 268 ~~~~~~~~~~~~r~~~~~~~~~~~~d~~t-g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~~dg~~~l 346 (470)
T d2bgra1 268 ATQERISLQWLRRIQNYSVMDICDYDESS-GRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHI 346 (470)
T ss_dssp EETTEEEEEEEESSTTEEEEEEEEEETTT-TEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEE
T ss_pred cCCCceeEEEeeccCCceEEEEEEecCCC-CcEEEEEEEeeeeeeccceeecccCCCceeeecCCCcEEEEeccCcCcee
Confidence 88887655432 22 235566654321 111100 0112222222222333345667788888777
Q ss_pred EEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEE-EEecCC-----eEEEEECCCCceEEEe---
Q psy9598 690 WYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVIT-AINFNF-----QIKIWDAFNGDLVQVL--- 760 (1915)
Q Consensus 690 WDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t-~s~~Dg-----~I~vwD~~tg~~i~~l--- 760 (1915)
|.+....... .........|..+ ++.++..|+. +...+. .|+..++..+.....+
T Consensus 347 y~~~~~g~~~---------------~~lt~g~~~v~~~-~~~d~~~iyf~a~~~~~~p~~~~ly~v~~~g~~~~~~lt~~ 410 (470)
T d2bgra1 347 CYFQIDKKDC---------------TFITKGTWEVIGI-EALTSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVTCLSCE 410 (470)
T ss_dssp EEEETTCSCC---------------EESCCSSSCEEEE-EEECSSEEEEEESCGGGCTTCBEEEEEETTCTTCEEESSTT
T ss_pred EEEeccCCce---------------eeeccCCeeEEEE-EEECCCEEEEEEecCCCCcceEEEEEEECCCCCceeEeccc
Confidence 7543222100 1111233445554 3334445443 332122 2554566555555544
Q ss_pred -eCCCCCeEEEEEccCCCCEEE-EE--ecCceEEEEECCCCccccceeee
Q psy9598 761 -KGHTNEVFVLESHPFDSRVLL-SA--GHDGLIIIWDILSSKQRGYKWFH 806 (1915)
Q Consensus 761 -~gH~~~V~sl~~sp~dg~~La-Sg--s~DG~I~IWdl~s~~~~~~~~~~ 806 (1915)
.+|...+.+++||| ++++++ ++ ...-.+.||+..+++. +..+.
T Consensus 411 ~~~~~~~~~s~~fSp-dgky~~~~~s~~~~P~~~l~~~~~g~~--v~~le 457 (470)
T d2bgra1 411 LNPERCQYYSVSFSK-EAKYYQLRCSGPGLPLYTLHSSVNDKG--LRVLE 457 (470)
T ss_dssp TSTTTBCBEEEEECT-TSSEEEEEECSBSSCEEEEEETTTTEE--EEEEE
T ss_pred ccCCCCCEEEEEECC-CCCEEEEEecCCCCCeEEEEECCCCCE--EEEEe
Confidence 36888899999999 998866 33 3345689999999887 66554
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.36 E-value=1e-12 Score=160.19 Aligned_cols=306 Identities=7% Similarity=-0.040 Sum_probs=191.6
Q ss_pred EEEEECCCcEEEEECCCCcEEEEEeC------------------------------CCCCEEEEEEeCCCCEEEEE-eCC
Q psy9598 491 IVTGADDLLIKLWRARDGKLLATLRG------------------------------CSGEISDIAIDNRNILLAAG-TVD 539 (1915)
Q Consensus 491 LaTGs~Dg~I~IWd~~tg~~~~~l~g------------------------------H~~~I~~Lafspdg~~LaSg-s~D 539 (1915)
++||+.+|.|.||++.+++.+.++.. |...+.+..++|||++|++. ..+
T Consensus 14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~ 93 (441)
T d1qnia2 14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKAN 93 (441)
T ss_dssp EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTT
T ss_pred EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCC
Confidence 56788899999999999998888632 22334555568999988665 468
Q ss_pred CcEEEEECCCCceEEEee-cCCCCeEEEEeccCccCCCcEEEEEeCCCe-----------------EEEEecccCccccc
Q psy9598 540 KTIRIWNLQTLAPISVLV-GHQGIITGVNFCPLEVNGFNYLASTSTDGC-----------------IGFWKYKLDIDISK 601 (1915)
Q Consensus 540 gtIrVWDl~tg~~~~~l~-~h~~~V~sl~fsp~~~~d~~~L~sgs~Dgt-----------------I~iWDl~~~~~~~~ 601 (1915)
+.|.+||+.++++...+. .+...+..++|+|++ ...++++.+.+.. +..+|..+......
T Consensus 94 ~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg--~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~q 171 (441)
T d1qnia2 94 TRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVP--KTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQ 171 (441)
T ss_dssp TEEEEEETTTTEEEEEEECTTCCCEEEEEECCSS--BCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEE
T ss_pred CEEEEEECCCCcEeeEEecCCCCCccceEEeccC--CEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEE
Confidence 899999999999888775 456789999999964 2235555544432 23345444433222
Q ss_pred eeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCC-eEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEE
Q psy9598 602 TVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDH-HVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVS 680 (1915)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg-~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~s 680 (1915)
.... ..+..+.|+|+|+++++++.+. .+..++..+......+... ..-..+.++++|+++..
T Consensus 172 I~v~-------------~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~----n~p~~~~~~~dGk~~~v 234 (441)
T d1qnia2 172 VIVD-------------GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVF----NVERIAAAVKAGNFKTI 234 (441)
T ss_dssp EEES-------------SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEE----EHHHHHHHHHTTCCBCC
T ss_pred EecC-------------CCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeC----CccceEEEecCCCEEEe
Confidence 2221 3467799999999998887653 3333333221111111111 11122345688887665
Q ss_pred EeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCce----
Q psy9598 681 GSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDL---- 756 (1915)
Q Consensus 681 gs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~---- 756 (1915)
+ .++.+.|++.......... + .......+.++|||+++++++..+++|.|||+.+...
T Consensus 235 ~-~~~v~vvd~~~~~~v~~~I-------P----------vgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~ 296 (441)
T d1qnia2 235 G-DSKVPVVDGRGESEFTRYI-------P----------VPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFED 296 (441)
T ss_dssp T-TCCCCEEECSSSCSSEEEE-------C----------CBSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTT
T ss_pred C-CCCcEEEEcccCCceEEEE-------e----------CCCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhc
Confidence 4 4677778766554432211 0 1122345899999999999988899999999864221
Q ss_pred ----EEEeeCC---CCCeEEEEEccCCCCEEEEEecCceEEEEECCCC------cc-c-cceeeeeeecCCCCcceEEEE
Q psy9598 757 ----VQVLKGH---TNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSS------KQ-R-GYKWFHNIVEGQGEGALFDGK 821 (1915)
Q Consensus 757 ----i~~l~gH---~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~------~~-~-~~~~~~~~~~~~~~~~V~~va 821 (1915)
..++.++ .-.....+|.+ ++..+.|.+.|..|..|++... .. . .+..+.......|...+.+.+
T Consensus 297 ~~~~~~~~~~~~~~glgplh~~fd~-~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t 375 (441)
T d1qnia2 297 KIELRDTIVAEPELGLGPLHTTFDG-RGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTES 375 (441)
T ss_dssp SSCGGGGEEECCBCCSCEEEEEECS-SSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTS
T ss_pred cCCcceEEEeecccccCcccceecC-CceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccc
Confidence 0111111 11245567888 8888888999999999998421 11 0 011121111223445666778
Q ss_pred EcCCCCEEEEEeC
Q psy9598 822 WSPDGTTCALTDS 834 (1915)
Q Consensus 822 fSpdg~~Lasg~~ 834 (1915)
++|||++|++++.
T Consensus 376 ~~pdGk~l~s~~k 388 (441)
T d1qnia2 376 RDADGKWLVVLSK 388 (441)
T ss_dssp TTCCCCEEEEEES
T ss_pred cCCCCcEEEecCc
Confidence 9999999999965
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.18 E-value=5.7e-11 Score=144.57 Aligned_cols=281 Identities=11% Similarity=0.007 Sum_probs=180.1
Q ss_pred CCCCcEEEEEEcCCCCEEEEEE-CCCcEEEEECCCCcEEEEEe-CCCCCEEEEEEeCCCC--EEEEEeCCC---------
Q psy9598 474 GHLSAVFCVLFDKLGEVIVTGA-DDLLIKLWRARDGKLLATLR-GCSGEISDIAIDNRNI--LLAAGTVDK--------- 540 (1915)
Q Consensus 474 gH~~~V~~vafspdg~~LaTGs-~Dg~I~IWd~~tg~~~~~l~-gH~~~I~~Lafspdg~--~LaSgs~Dg--------- 540 (1915)
.|.-.+.+..++|||++|++.. .++.|.+||+.++++...+. .+...+..++|+|+|+ +++.++.+.
T Consensus 69 ~hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~ 148 (441)
T d1qnia2 69 CHHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTD 148 (441)
T ss_dssp BCCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSC
T ss_pred ccCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccc
Confidence 3555667777889999997664 67899999999999888775 4567899999999988 555554432
Q ss_pred --------cEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCC-eEEEEecccCccccceeccCccccc
Q psy9598 541 --------TIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDG-CIGFWKYKLDIDISKTVFHEPVMFN 611 (1915)
Q Consensus 541 --------tIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~Dg-tI~iWDl~~~~~~~~~~~~~~~~~~ 611 (1915)
.+..+|..+......+... +.+..+.|+|+ +.++++++.+. .+..++..+......+...
T Consensus 149 ~~~~~~~~~~~~iD~~t~~v~~qI~v~-~~p~~v~~spd----Gk~a~vt~~nse~~~~id~~t~~~~d~i~v~------ 217 (441)
T d1qnia2 149 FSLDNSYTMFTAIDAETMDVAWQVIVD-GNLDNTDADYT----GKYATSTCYNSERAVDLAGTMRNDRDWVVVF------ 217 (441)
T ss_dssp CCGGGEEEEEEEEETTTCSEEEEEEES-SCCCCEEECSS----SSEEEEEESCTTCCSSHHHHTCSSBCEEEEE------
T ss_pred cccccccceEEeecCccceeeEEEecC-CCccceEECCC----CCEEEEEecCCCceEEEeccCcceEEEEEeC------
Confidence 2456888888877776543 45788999994 47777777653 3333333333221111111
Q ss_pred cccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEE-EEeCCCcEEEE
Q psy9598 612 ERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFV-SGSRDGTALIW 690 (1915)
Q Consensus 612 ~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~-sgs~DG~I~IW 690 (1915)
.....+.++++|+++.++ .++.+.|++.. ....+..+..+.. ...+.++|+|++++ ++..+++|.||
T Consensus 218 -------n~p~~~~~~~dGk~~~v~-~~~v~vvd~~~---~~~v~~~IPvgks-PhGv~vSPDGkyl~~~~~~~~tvsv~ 285 (441)
T d1qnia2 218 -------NVERIAAAVKAGNFKTIG-DSKVPVVDGRG---ESEFTRYIPVPKN-PHGLNTSPDGKYFIANGKLSPTVSVI 285 (441)
T ss_dssp -------EHHHHHHHHHTTCCBCCT-TCCCCEEECSS---SCSSEEEECCBSS-CCCEEECTTSCEEEEECTTSSBEEEE
T ss_pred -------CccceEEEecCCCEEEeC-CCCcEEEEccc---CCceEEEEeCCCC-ccCceECCCCCEEEEeCCcCCcEEEE
Confidence 111223566788877664 45677777652 2233444555444 57899999999765 56789999999
Q ss_pred EccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCC----------CceEEEe
Q psy9598 691 YYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFN----------GDLVQVL 760 (1915)
Q Consensus 691 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~t----------g~~i~~l 760 (1915)
|+.+.... +...+...................+|+++|..+ ++...|..|..|++.. ...+..+
T Consensus 286 d~~k~~~~-----~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~y-ts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~ 359 (441)
T d1qnia2 286 AIDKLDDL-----FEDKIELRDTIVAEPELGLGPLHTTFDGRGNAY-TTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKL 359 (441)
T ss_dssp EGGGHHHH-----TTTSSCGGGGEEECCBCCSCEEEEEECSSSEEE-EEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEE
T ss_pred EeehhhhH-----hhccCCcceEEEeecccccCcccceecCCceEE-EcccccceEEEeccchhhhhhccCCCceeEecc
Confidence 98753310 000011111111122233445667899998654 4444499999999731 1234444
Q ss_pred -----eCCCCCeEEEEEccCCCCEEEEEe
Q psy9598 761 -----KGHTNEVFVLESHPFDSRVLLSAG 784 (1915)
Q Consensus 761 -----~gH~~~V~sl~~sp~dg~~LaSgs 784 (1915)
.||...+.+.+++| +|++|++++
T Consensus 360 ~v~y~~GH~~~~~~~t~~p-dGk~l~s~~ 387 (441)
T d1qnia2 360 DVQYQPGHNHASLTESRDA-DGKWLVVLS 387 (441)
T ss_dssp ECSSCEEEEEETTTTSTTC-CCCEEEEEE
T ss_pred ccccCCCCCccccccccCC-CCcEEEecC
Confidence 47777777778999 999999994
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.96 E-value=1.4e-07 Score=113.48 Aligned_cols=300 Identities=10% Similarity=-0.033 Sum_probs=164.0
Q ss_pred EEEEEC--CCcEEE--EECCCCcEE--EEE-eCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEee--cCCC
Q psy9598 491 IVTGAD--DLLIKL--WRARDGKLL--ATL-RGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLV--GHQG 561 (1915)
Q Consensus 491 LaTGs~--Dg~I~I--Wd~~tg~~~--~~l-~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~--~h~~ 561 (1915)
|++|+. .+.|.+ ||..++.+. ... ......+..|+|++++++|++++. +.+..|.+.....+..+. ....
T Consensus 5 l~vGtyt~~~~i~~~~fd~~~~~l~~~~~~~~~~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~ 83 (365)
T d1jofa_ 5 LMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGG 83 (365)
T ss_dssp EEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCS
T ss_pred EEEEeecCCCCEEEEEEcCCCCeEEEeeeeeccCCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCC
Confidence 555543 344543 444555432 222 234555678999999999988765 567777665322222221 1223
Q ss_pred CeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCe
Q psy9598 562 IITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHH 641 (1915)
Q Consensus 562 ~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~ 641 (1915)
....+++++++ ..++....+ .+...|....+..++........+..
T Consensus 84 ~p~~v~~~~~~----~~~~v~~a~------------------------------~~~~~v~~~~~~~~~~~~~~~~~~~~ 129 (365)
T d1jofa_ 84 HPRANDADTNT----RAIFLLAAK------------------------------QPPYAVYANPFYKFAGYGNVFSVSET 129 (365)
T ss_dssp SGGGGCTTSCC----EEEEEEECS------------------------------STTCCEEEEEESSSCCEEEEEEECTT
T ss_pred CcEEEEECCCC----CEEEEEEec------------------------------CCCCEEEEeEccCCCCcceeEeeeec
Confidence 34556666632 322221110 01123444444444433322222211
Q ss_pred EEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeC-CCcEEEEEccCCceEEeeecccccCCCCccccccccc
Q psy9598 642 VRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSR-DGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNK 720 (1915)
Q Consensus 642 I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~-DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 720 (1915)
..+... ...........+.++.|+|+|++|++++. ...|.+|++........... ......
T Consensus 130 ~~~~~~-------~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~-----------~~~~~~ 191 (365)
T d1jofa_ 130 GKLEKN-------VQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGS-----------VDAPDP 191 (365)
T ss_dssp CCEEEE-------EEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEE-----------EECSST
T ss_pred ceecCc-------ccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccc-----------eeecCC
Confidence 112111 00011122334789999999998877764 45688887654321111100 011123
Q ss_pred cccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEE--ee-----------------CCCCCeEEEEEccCCCCEEE
Q psy9598 721 KIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQV--LK-----------------GHTNEVFVLESHPFDSRVLL 781 (1915)
Q Consensus 721 ~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~--l~-----------------gH~~~V~sl~~sp~dg~~La 781 (1915)
......++|+|+++++++....++.|.+|++..+..... .. .+......|.++| ++++|+
T Consensus 192 g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sp-dG~~ly 270 (365)
T d1jofa_ 192 GDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTF-SGKYMF 270 (365)
T ss_dssp TCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECT-TSSEEE
T ss_pred CCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECC-CCCEEE
Confidence 456788999999999999888799999999876543221 11 1122356788999 999887
Q ss_pred EEec------CceEEEEECCCCccccceeeeeeec-CCCCcceEEEEEcC-CCCEEEEEe-CCCeEEEEeCCCC
Q psy9598 782 SAGH------DGLIIIWDILSSKQRGYKWFHNIVE-GQGEGALFDGKWSP-DGTTCALTD-SYGHLLVYGLGGF 846 (1915)
Q Consensus 782 Sgs~------DG~I~IWdl~s~~~~~~~~~~~~~~-~~~~~~V~~vafSp-dg~~Lasg~-~dG~I~Iwdl~s~ 846 (1915)
++.. .+.|.+|++..... +........ ........+++++| +|++|++++ .++.|.||++...
T Consensus 271 vsnr~~~~~~~~~i~~~~~~~~g~--~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~ 342 (365)
T d1jofa_ 271 ASSRANKFELQGYIAGFKLRDCGS--IEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp EEEEESSTTSCCEEEEEEECTTSC--EEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred EEcccCCCccceEEEEEEecCCCc--eeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence 7642 23477777765433 222111111 11224567799998 899887774 6689999987654
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.86 E-value=7.4e-07 Score=107.07 Aligned_cols=286 Identities=9% Similarity=0.028 Sum_probs=157.3
Q ss_pred CCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCC-CcEEEEE-eCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCc
Q psy9598 474 GHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARD-GKLLATL-RGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLA 551 (1915)
Q Consensus 474 gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~t-g~~~~~l-~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~ 551 (1915)
.+...+.-|+|++++++|++++. +.+..|.+.. +...... .........++++++++.++....+
T Consensus 37 ~~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~------------ 103 (365)
T d1jofa_ 37 PQDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAK------------ 103 (365)
T ss_dssp CTTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECS------------
T ss_pred cCCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEEEEec------------
Confidence 34455667999999999998875 4677777653 2232221 1123345667788888754332211
Q ss_pred eEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCc
Q psy9598 552 PISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGL 631 (1915)
Q Consensus 552 ~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~ 631 (1915)
.+.+.|..+.+.+.. ........+...++.... ... .......+.++.|+|+|+
T Consensus 104 ------~~~~~v~~~~~~~~~----~~~~~~~~~~~~~~~~~~-----~~~-----------~~q~~~h~h~v~~sPdG~ 157 (365)
T d1jofa_ 104 ------QPPYAVYANPFYKFA----GYGNVFSVSETGKLEKNV-----QNY-----------EYQENTGIHGMVFDPTET 157 (365)
T ss_dssp ------STTCCEEEEEESSSC----CEEEEEEECTTCCEEEEE-----EEE-----------ECCTTCCEEEEEECTTSS
T ss_pred ------CCCCEEEEeEccCCC----CcceeEeeeecceecCcc-----cCc-----------ccCCCCcceEEEECCCCC
Confidence 022223333333211 111111111111111000 000 001123478999999999
Q ss_pred EEEEEeC-CCeEEEEEecCCCCCceeEEe--ccCCCCeeEEEEcCCCCEEEEE-eCCCcEEEEEccCCceEEeeeccc-c
Q psy9598 632 FLATGSG-DHHVRVYKMDGVDSPLGILEV--EEHSDKVDSIQWSHSHLRFVSG-SRDGTALIWYYKCSQWRFIRLDMN-T 706 (1915)
Q Consensus 632 ~Lasgs~-Dg~I~IwDl~~~~~~~~i~~l--~~h~~~V~sl~fspdg~~L~sg-s~DG~I~IWDl~~~~~~~~~~~~~-~ 706 (1915)
+|++++. ...|.+|++............ .........++|+|+++++++. -.+++|.+|++............. .
T Consensus 158 ~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~ 237 (365)
T d1jofa_ 158 YLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFP 237 (365)
T ss_dssp EEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEE
T ss_pred EEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeec
Confidence 8887754 457889987543322222222 2234578899999999987554 468899999987665322211100 0
Q ss_pred cCC-C-CccccccccccccEEEEEECCCCCEEEEEEecCC-----eEEEEECCCCceEEE-e-----eCCCCCeEEEEEc
Q psy9598 707 CLP-H-TKETSDETNKKIKVTMVAWDASDRWVITAINFNF-----QIKIWDAFNGDLVQV-L-----KGHTNEVFVLESH 773 (1915)
Q Consensus 707 ~~~-~-~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg-----~I~vwD~~tg~~i~~-l-----~gH~~~V~sl~~s 773 (1915)
... . ................+.++|+|++|+++...+. .|.+|++.....+.. . ........+++++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~ 317 (365)
T d1jofa_ 238 LIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPC 317 (365)
T ss_dssp SSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEEC
T ss_pred cccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEec
Confidence 000 0 0011112234455677899999999998865333 377777654322221 1 1223455778899
Q ss_pred cCCCCEEEEE-ecCceEEEEECCCCc
Q psy9598 774 PFDSRVLLSA-GHDGLIIIWDILSSK 798 (1915)
Q Consensus 774 p~dg~~LaSg-s~DG~I~IWdl~s~~ 798 (1915)
|.++++|+++ ..++.|.||++....
T Consensus 318 p~~G~~l~va~~~s~~v~v~~~~~~~ 343 (365)
T d1jofa_ 318 PWSDEWMAITDDQEGWLEIYRWKDEF 343 (365)
T ss_dssp TTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred CCCCCEEEEEeCCCCeEEEEEEeCCc
Confidence 8678877666 567999999986543
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.86 E-value=3.6e-07 Score=106.70 Aligned_cols=239 Identities=13% Similarity=0.069 Sum_probs=159.5
Q ss_pred cEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCce-EEEe
Q psy9598 478 AVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAP-ISVL 556 (1915)
Q Consensus 478 ~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~-~~~l 556 (1915)
.+..++++|||+++++...+++|..|+.. +.. ..+..+.+.+.+|+|+++|++++++..++.+.+|+...... ...+
T Consensus 29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~-g~~-~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~ 106 (302)
T d2p4oa1 29 FLENLASAPDGTIFVTNHEVGEIVSITPD-GNQ-QIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETL 106 (302)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTT-CCE-EEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred CcCCEEECCCCCEEEEeCCCCEEEEEeCC-CCE-EEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeec
Confidence 57889999999999999999999999864 433 33445667899999999999999998888888888754322 1222
Q ss_pred --ecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEE
Q psy9598 557 --VGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLA 634 (1915)
Q Consensus 557 --~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~La 634 (1915)
......++.+++.+ ++.++++.+.++.|..++...+.... ....+.............+..++++. +.+++
T Consensus 107 ~~~~~~~~~n~i~~~~----~g~~~v~~~~~~~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ngi~~~~-~~l~~ 179 (302)
T d2p4oa1 107 LTLPDAIFLNGITPLS----DTQYLTADSYRGAIWLIDVVQPSGSI--WLEHPMLARSNSESVFPAANGLKRFG-NFLYV 179 (302)
T ss_dssp EECTTCSCEEEEEESS----SSEEEEEETTTTEEEEEETTTTEEEE--EEECGGGSCSSTTCCSCSEEEEEEET-TEEEE
T ss_pred cccCCccccceeEEcc----CCCEEeeccccccceeeeccCCccee--EecCCccceeeccCcccccccccccC-Cceee
Confidence 23445688999988 45888888888988888877653211 11111111111222334566777764 34666
Q ss_pred EEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccc
Q psy9598 635 TGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKET 714 (1915)
Q Consensus 635 sgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~ 714 (1915)
+.+..+.|..+++...........+ .+......|+|.++|.++++...++.|..|+..........
T Consensus 180 ~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~~~~~~~------------- 245 (302)
T d2p4oa1 180 SNTEKMLLLRIPVDSTDKPGEPEIF-VEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRSTTIIAQ------------- 245 (302)
T ss_dssp EETTTTEEEEEEBCTTSCBCCCEEE-EESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCCEEEEEC-------------
T ss_pred ecCCCCeEEeccccccccccccccc-cCCCCCcceEECCCCCEEEEEcCCCcEEEECCCCCEEEEEe-------------
Confidence 7777889988888543322222222 23345678999999998888888999998876543211110
Q ss_pred cccccccccEEEEEE---CCCCCEEEEEEe
Q psy9598 715 SDETNKKIKVTMVAW---DASDRWVITAIN 741 (1915)
Q Consensus 715 ~~~~~~~~~V~~va~---spdg~~L~t~s~ 741 (1915)
........++++| ++|++.|++++.
T Consensus 246 --~~~~~~~pt~vafg~~~~D~~~Lyvtt~ 273 (302)
T d2p4oa1 246 --AEQGVIGSTAVAFGQTEGDCTAIYVVTN 273 (302)
T ss_dssp --GGGTCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred --cCCCCCCceEEEEcCCCCCCCEEEEECC
Confidence 1112345789999 678888887765
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.70 E-value=1.3e-06 Score=101.83 Aligned_cols=241 Identities=9% Similarity=-0.051 Sum_probs=157.1
Q ss_pred CeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCe
Q psy9598 562 IITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHH 641 (1915)
Q Consensus 562 ~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~ 641 (1915)
.+..+++.| +++++++...+++|..|+...... . + ......+.+++|+++|++++++..++.
T Consensus 29 ~~e~iAv~p----dG~l~vt~~~~~~I~~i~p~g~~~--~--~----------~~~~~~~~gla~~~dG~l~v~~~~~~~ 90 (302)
T d2p4oa1 29 FLENLASAP----DGTIFVTNHEVGEIVSITPDGNQQ--I--H----------ATVEGKVSGLAFTSNGDLVATGWNADS 90 (302)
T ss_dssp CEEEEEECT----TSCEEEEETTTTEEEEECTTCCEE--E--E----------EECSSEEEEEEECTTSCEEEEEECTTS
T ss_pred CcCCEEECC----CCCEEEEeCCCCEEEEEeCCCCEE--E--E----------EcCCCCcceEEEcCCCCeEEEecCCce
Confidence 578899999 458999999999998887554311 1 1 112367899999999999999988899
Q ss_pred EEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCcccccccccc
Q psy9598 642 VRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKK 721 (1915)
Q Consensus 642 I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 721 (1915)
+.+|+......................+++.++|.++++.+.++.+..++...+............. .......
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~------~~~~~~~ 164 (302)
T d2p4oa1 91 IPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLAR------SNSESVF 164 (302)
T ss_dssp CEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSC------SSTTCCS
T ss_pred EEEEEecccccceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccce------eeccCcc
Confidence 9888875433222222223345668899999999999998899999888888765433222211110 1111223
Q ss_pred ccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEE--eeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCcc
Q psy9598 722 IKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQV--LKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQ 799 (1915)
Q Consensus 722 ~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~--l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~ 799 (1915)
.....+.++ +.+++.+....+.|+.+++........ ...+......+++.+ +++++++...++.|..|+......
T Consensus 165 ~~~ngi~~~--~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~-dG~l~va~~~~~~V~~i~p~G~~~ 241 (302)
T d2p4oa1 165 PAANGLKRF--GNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDV-EGNLYGATHIYNSVVRIAPDRSTT 241 (302)
T ss_dssp CSEEEEEEE--TTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBT-TCCEEEECBTTCCEEEECTTCCEE
T ss_pred ccccccccc--CCceeeecCCCCeEEeccccccccccccccccCCCCCcceEECC-CCCEEEEEcCCCcEEEECCCCCEE
Confidence 345556664 456666666588999998765432211 111223456789999 899888888899999987754321
Q ss_pred ccceeeeeeecCCCCcceEEEEE---cCCCCEEEEEeCC
Q psy9598 800 RGYKWFHNIVEGQGEGALFDGKW---SPDGTTCALTDSY 835 (1915)
Q Consensus 800 ~~~~~~~~~~~~~~~~~V~~vaf---Spdg~~Lasg~~d 835 (1915)
.+... .......++++| ++|++.|.+++..
T Consensus 242 ----~~~~~--~~~~~~pt~vafg~~~~D~~~Lyvtt~~ 274 (302)
T d2p4oa1 242 ----IIAQA--EQGVIGSTAVAFGQTEGDCTAIYVVTNG 274 (302)
T ss_dssp ----EEECG--GGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred ----EEEec--CCCCCCceEEEEcCCCCCCCEEEEECCC
Confidence 11100 112345789999 6788888777654
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.67 E-value=1.2e-06 Score=99.73 Aligned_cols=244 Identities=9% Similarity=-0.001 Sum_probs=150.8
Q ss_pred EEeCCC--CCEEEEEEeCCCCEEEEE-eCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEE
Q psy9598 513 TLRGCS--GEISDIAIDNRNILLAAG-TVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIG 589 (1915)
Q Consensus 513 ~l~gH~--~~I~~Lafspdg~~LaSg-s~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~ 589 (1915)
.+.|+. ..-.+|+++++|.++++. +..+.|..++...........+-.....+|++.++ +.++++....+.|+
T Consensus 6 ~~~~~~~~~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~----g~i~v~d~~~~~i~ 81 (260)
T d1rwia_ 6 PFTGIDFRLSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGA----GTVYVTDFNNRVVT 81 (260)
T ss_dssp CCCSCCSCCCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTT----CCEEEEETTTEEEE
T ss_pred ecccCCCcCCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCC----CCEEEeeeeeceee
Confidence 344443 345899999999976665 45567777766543332222222234578888873 46777777777776
Q ss_pred EEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEE
Q psy9598 590 FWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSI 669 (1915)
Q Consensus 590 iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl 669 (1915)
+++-.....+.. ........++++.++|+++++...++.+.+++..+. ....... .......+|
T Consensus 82 ~~~~~~~~~~~~-------------~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~--~~~~~~~-~~~~~p~~i 145 (260)
T d1rwia_ 82 LAAGSNNQTVLP-------------FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSK--TQTVLPF-TGLNDPDGV 145 (260)
T ss_dssp ECTTCSCCEECC-------------CCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCS--SCEECCC-CSCCSCCEE
T ss_pred eeeeccceeeee-------------eeeeeecccccccccceeEeeccccccccccccccc--eeeeeee-cccCCccee
Confidence 665433321111 011245789999999988887777777777775321 1112111 223456789
Q ss_pred EEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEE
Q psy9598 670 QWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIW 749 (1915)
Q Consensus 670 ~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vw 749 (1915)
+++++|..+++...++.|..++.......... .........|+++++|.++++... .+.|..+
T Consensus 146 ~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~----------------~~~~~~p~gi~~d~~g~l~vsd~~-~~~i~~~ 208 (260)
T d1rwia_ 146 AVDNSGNVYVTDTDNNRVVKLEAESNNQVVLP----------------FTDITAPWGIAVDEAGTVYVTEHN-TNQVVKL 208 (260)
T ss_dssp EECTTCCEEEEEGGGTEEEEECTTTCCEEECC----------------CSSCCSEEEEEECTTCCEEEEETT-TTEEEEE
T ss_pred eecCCCCEeeeccccccccccccccceeeeee----------------ccccCCCccceeeeeeeeeeeecC-CCEEEEE
Confidence 99999998888888889999987765422210 112234578999999987666555 7888888
Q ss_pred ECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEEC
Q psy9598 750 DAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDI 794 (1915)
Q Consensus 750 D~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl 794 (1915)
+.............-.....|++++ ++.++++-..++.|+.++.
T Consensus 209 ~~~~~~~~~~~~~~~~~P~~i~~d~-~g~l~vad~~~~rI~~i~~ 252 (260)
T d1rwia_ 209 LAGSTTSTVLPFTGLNTPLAVAVDS-DRTVYVADRGNDRVVKLTS 252 (260)
T ss_dssp CTTCSCCEECCCCSCCCEEEEEECT-TCCEEEEEGGGTEEEEECC
T ss_pred eCCCCeEEEEccCCCCCeEEEEEeC-CCCEEEEECCCCEEEEEeC
Confidence 8654432222223334578999998 7888887666776665544
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.65 E-value=6e-06 Score=94.85 Aligned_cols=242 Identities=15% Similarity=0.132 Sum_probs=162.0
Q ss_pred CEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecC------CCCeEEEEeccCccCCCcEEE-EEeCCCeEEEEe
Q psy9598 520 EISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGH------QGIITGVNFCPLEVNGFNYLA-STSTDGCIGFWK 592 (1915)
Q Consensus 520 ~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h------~~~V~sl~fsp~~~~d~~~L~-sgs~DgtI~iWD 592 (1915)
....|+++++|+++++-..++.|++||.. |..+..+... ......+++.+. .+..++ ..+.++.|.+++
T Consensus 24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~---~~~~~~~~~~~~~~i~~~~ 99 (279)
T d1q7fa_ 24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRN---SGDIIVTERSPTHQIQIYN 99 (279)
T ss_dssp CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETT---TTEEEEEECGGGCEEEEEC
T ss_pred CccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCccccccccccccccc---ccccceeccCCcccccccc
Confidence 46889999999988887788999999965 6666666321 113345555543 223343 344556777776
Q ss_pred cccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEE--eccCCCCeeEEE
Q psy9598 593 YKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILE--VEEHSDKVDSIQ 670 (1915)
Q Consensus 593 l~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~--l~~h~~~V~sl~ 670 (1915)
.... ..... . ........++++.++|.++++....+.+.+++..+ ..+.. ...+......++
T Consensus 100 ~~g~-~~~~~--~---------~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g----~~~~~~g~~~~~~~~~~i~ 163 (279)
T d1q7fa_ 100 QYGQ-FVRKF--G---------ATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG----NVLHKFGCSKHLEFPNGVV 163 (279)
T ss_dssp TTSC-EEEEE--C---------TTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS----CEEEEEECTTTCSSEEEEE
T ss_pred cccc-ceeec--C---------CCcccccceeccccCCcEEEEeeccceeeEeccCC----ceeecccccccccccceee
Confidence 5432 11111 1 11235577899999999888888888888887632 22232 345667788999
Q ss_pred EcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEE
Q psy9598 671 WSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWD 750 (1915)
Q Consensus 671 fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD 750 (1915)
+.+++..+++....+.|.+||..... ..... ..+.......|+++++|..+++-...++.|.+|+
T Consensus 164 ~d~~g~i~v~d~~~~~V~~~d~~G~~-~~~~g--------------~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~ 228 (279)
T d1q7fa_ 164 VNDKQEIFISDNRAHCVKVFNYEGQY-LRQIG--------------GEGITNYPIGVGINSNGEILIADNHNNFNLTIFT 228 (279)
T ss_dssp ECSSSEEEEEEGGGTEEEEEETTCCE-EEEES--------------CTTTSCSEEEEEECTTCCEEEEECSSSCEEEEEC
T ss_pred eccceeEEeeeccccceeeeecCCce-eeeec--------------ccccccCCcccccccCCeEEEEECCCCcEEEEEC
Confidence 99999998898899999999875432 22110 1112334678999999987666444255799998
Q ss_pred CCCCceEEEeeCC--CCCeEEEEEccCCCCEEEEEecCceEEEEECCCCcc
Q psy9598 751 AFNGDLVQVLKGH--TNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQ 799 (1915)
Q Consensus 751 ~~tg~~i~~l~gH--~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~ 799 (1915)
. +|+.+.++... ....+.|++.+ ++.+++ ++.+..|++|......+
T Consensus 229 ~-~G~~~~~~~~~~~~~~p~~vav~~-dG~l~V-~~~n~~v~~fr~~~~~~ 276 (279)
T d1q7fa_ 229 Q-DGQLISALESKVKHAQCFDVALMD-DGSVVL-ASKDYRLYIYRYVQLAP 276 (279)
T ss_dssp T-TSCEEEEEEESSCCSCEEEEEEET-TTEEEE-EETTTEEEEEECSCCCC
T ss_pred C-CCCEEEEEeCCCCCCCEeEEEEeC-CCcEEE-EeCCCeEEEEEeeeecC
Confidence 4 68888777533 34578999999 776555 55789999999876544
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.62 E-value=1.7e-06 Score=98.46 Aligned_cols=238 Identities=8% Similarity=-0.043 Sum_probs=149.8
Q ss_pred CcEEEEEEcCCCCEEEEEE-CCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEE
Q psy9598 477 SAVFCVLFDKLGEVIVTGA-DDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISV 555 (1915)
Q Consensus 477 ~~V~~vafspdg~~LaTGs-~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~ 555 (1915)
..=+.|+++++|.+.++.. ..+.|..++...........+-......|+++++|.++++....+.|++++..++..+..
T Consensus 14 ~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~ 93 (260)
T d1rwia_ 14 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLP 93 (260)
T ss_dssp CCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECC
T ss_pred CCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeeeeeceeeeeeeccceeeee
Confidence 3457999999999766654 456777776654433322222223457889999999888887777777776655554433
Q ss_pred eecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEE
Q psy9598 556 LVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLAT 635 (1915)
Q Consensus 556 l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Las 635 (1915)
+. ......+|++.+. ++++++-..+..+..++...... .. .. ........+++++++|.++++
T Consensus 94 ~~-~~~~p~~iavd~~----g~i~v~d~~~~~~~~~~~~~~~~--~~-~~---------~~~~~~p~~i~~~~~g~~~v~ 156 (260)
T d1rwia_ 94 FD-GLNYPEGLAVDTQ----GAVYVADRGNNRVVKLAAGSKTQ--TV-LP---------FTGLNDPDGVAVDNSGNVYVT 156 (260)
T ss_dssp CC-SCCSEEEEEECTT----CCEEEEEGGGTEEEEECTTCSSC--EE-CC---------CCSCCSCCEEEECTTCCEEEE
T ss_pred ee-eeeeccccccccc----ceeEeecccccccccccccccee--ee-ee---------ecccCCcceeeecCCCCEeee
Confidence 32 2345788999874 36777666666677776544321 01 00 011234568999999998888
Q ss_pred EeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCcccc
Q psy9598 636 GSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETS 715 (1915)
Q Consensus 636 gs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~ 715 (1915)
...++.|..++..+.. ..............|++.++|.++++....+.|..++.........
T Consensus 157 ~~~~~~i~~~d~~~~~---~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~~~--------------- 218 (260)
T d1rwia_ 157 DTDNNRVVKLEAESNN---QVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVL--------------- 218 (260)
T ss_dssp EGGGTEEEEECTTTCC---EEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCEEC---------------
T ss_pred ccccccccccccccce---eeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeEEEE---------------
Confidence 8888899999874321 1222223445678999999999888888888888886654331110
Q ss_pred ccccccccEEEEEECCCCCEEEEEEecCCeEEEEEC
Q psy9598 716 DETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDA 751 (1915)
Q Consensus 716 ~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~ 751 (1915)
....-.....|+++++|..+++-.. ++.|+.++.
T Consensus 219 -~~~~~~~P~~i~~d~~g~l~vad~~-~~rI~~i~~ 252 (260)
T d1rwia_ 219 -PFTGLNTPLAVAVDSDRTVYVADRG-NDRVVKLTS 252 (260)
T ss_dssp -CCCSCCCEEEEEECTTCCEEEEEGG-GTEEEEECC
T ss_pred -ccCCCCCeEEEEEeCCCCEEEEECC-CCEEEEEeC
Confidence 0011234578999999876555444 777776654
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.60 E-value=1.1e-05 Score=91.17 Aligned_cols=238 Identities=13% Similarity=0.053 Sum_probs=142.4
Q ss_pred cEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCC---cEEEEECCCCceEEEeecCCCCeEEEEeccCccCC
Q psy9598 499 LIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDK---TIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNG 575 (1915)
Q Consensus 499 ~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~Dg---tIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d 575 (1915)
.|.|-|...+... .+..+...+...+|||||+.||-..... .+.+.+..++.. ..+..+.+.+.+..|+|++
T Consensus 20 ~l~i~d~dG~~~~-~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~spdg--- 94 (269)
T d2hqsa1 20 ELRVSDYDGYNQF-VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV-RQVASFPRHNGAPAFSPDG--- 94 (269)
T ss_dssp EEEEEETTSCSCE-EEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EEEECCSSCEEEEEECTTS---
T ss_pred EEEEEcCCCCCcE-EEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCce-eEEeeeecccccceecCCC---
Confidence 5777776544433 3444567789999999999998765433 466667766554 4455677888999999954
Q ss_pred CcEEEEEe-CCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEE-EEeCCCeEEEEEecCCCCC
Q psy9598 576 FNYLASTS-TDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLA-TGSGDHHVRVYKMDGVDSP 653 (1915)
Q Consensus 576 ~~~L~sgs-~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~La-sgs~Dg~I~IwDl~~~~~~ 653 (1915)
..|+..+ .++...++........... ...+........+++++..++ +...+|...||.......
T Consensus 95 -~~i~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~- 161 (269)
T d2hqsa1 95 -SKLAFALSKTGSLNLYVMDLASGQIRQ-----------VTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGG- 161 (269)
T ss_dssp -SEEEEEECTTSSCEEEEEETTTCCEEE-----------CCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSS-
T ss_pred -CeeeEeeecCCccceeeccccccccee-----------eeeccccccccccccccccceecccccCCceEeeeecccc-
Confidence 5555444 3444333332222110000 111223444556777666544 444566555555432221
Q ss_pred ceeEEeccCCCCeeEEEEcCCCCEEEEEeCC-CcEEEEEcc--CCceEEeeecccccCCCCccccccccccccEEEEEEC
Q psy9598 654 LGILEVEEHSDKVDSIQWSHSHLRFVSGSRD-GTALIWYYK--CSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWD 730 (1915)
Q Consensus 654 ~~i~~l~~h~~~V~sl~fspdg~~L~sgs~D-G~I~IWDl~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~s 730 (1915)
....+..+........|+|++..++..+.+ |...+|... .+.... ..........+|+
T Consensus 162 -~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~~------------------~~~~~~~~~p~~S 222 (269)
T d2hqsa1 162 -APQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV------------------LSSTFLDETPSLA 222 (269)
T ss_dssp -CCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEE------------------CCCSSSCEEEEEC
T ss_pred -cceeeecccccccccccccccceeEEEeecCCceeeeEeecccccceE------------------eecCccccceEEC
Confidence 223344556677788999999988776554 445555433 332111 1122345667899
Q ss_pred CCCCEEEEEEec--CCeEEEEECCCCceEEEeeCCCCCeEEEEEcc
Q psy9598 731 ASDRWVITAINF--NFQIKIWDAFNGDLVQVLKGHTNEVFVLESHP 774 (1915)
Q Consensus 731 pdg~~L~t~s~~--Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp 774 (1915)
|||+.|+..+.. ...|++|++..+.. ..+....+.+...+|+|
T Consensus 223 PDG~~i~f~s~~~~~~~l~~~~~dg~~~-~~lt~~~g~~~~p~WSP 267 (269)
T d2hqsa1 223 PNGTMVIYSSSQGMGSVLNLVSTDGRFK-ARLPATDGQVKFPAWSP 267 (269)
T ss_dssp TTSSEEEEEEEETTEEEEEEEETTSCCE-EECCCSSSEEEEEEECC
T ss_pred CCCCEEEEEEcCCCCcEEEEEECCCCCE-EEEeCCCCcEEeEEeCC
Confidence 999999876642 24688999976654 55666777888899998
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.58 E-value=6.1e-06 Score=96.57 Aligned_cols=243 Identities=9% Similarity=-0.000 Sum_probs=150.6
Q ss_pred CCcEEEEEEcCCCCEEEEEEC-------CCcEEEEECCCCcEEEEEeCC----CCCEEEEEEeCCCCEEEEEeCCCcEEE
Q psy9598 476 LSAVFCVLFDKLGEVIVTGAD-------DLLIKLWRARDGKLLATLRGC----SGEISDIAIDNRNILLAAGTVDKTIRI 544 (1915)
Q Consensus 476 ~~~V~~vafspdg~~LaTGs~-------Dg~I~IWd~~tg~~~~~l~gH----~~~I~~Lafspdg~~LaSgs~DgtIrV 544 (1915)
....-.++|+++|+++++... +|.|..||..++......... .+.-..|+|.+++..|+++...+.|.+
T Consensus 17 ~~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~ 96 (314)
T d1pjxa_ 17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLV 96 (314)
T ss_dssp CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEE
T ss_pred CCCCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEE
Confidence 344567899999998876433 467999999888765443221 223578999999998888877777888
Q ss_pred EECCCCceEEEeecCC----CCeEEEEeccCccCCCcEEEEEeC---------------CCeEEEEecccCccccceecc
Q psy9598 545 WNLQTLAPISVLVGHQ----GIITGVNFCPLEVNGFNYLASTST---------------DGCIGFWKYKLDIDISKTVFH 605 (1915)
Q Consensus 545 WDl~tg~~~~~l~~h~----~~V~sl~fsp~~~~d~~~L~sgs~---------------DgtI~iWDl~~~~~~~~~~~~ 605 (1915)
.+..++.......... ...+.+++.+. +.+.++... .|.|..++.... .....
T Consensus 97 ~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~----G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg~--~~~~~-- 168 (314)
T d1pjxa_ 97 VQTDGTFEEIAKKDSEGRRMQGCNDCAFDYE----GNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQ--MIQVD-- 168 (314)
T ss_dssp EETTSCEEECCSBCTTSCBCBCCCEEEECTT----SCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSC--EEEEE--
T ss_pred EeCCCcEEEEEeccccccccCCCcEEEECCC----CCEEEecCccCcccccccceeccCCceEEEEeecCc--eeEee--
Confidence 8987543222111111 13577888873 356555322 123333322111 00000
Q ss_pred CccccccccCCCCCceEEEEECCCCc-----EEEEEeCCCeEEEEEecCCCCCce---eEEecc-CCCCeeEEEEcCCCC
Q psy9598 606 EPVMFNERIRPGNAHILCSSFSPGGL-----FLATGSGDHHVRVYKMDGVDSPLG---ILEVEE-HSDKVDSIQWSHSHL 676 (1915)
Q Consensus 606 ~~~~~~~~~~~~~~~V~~l~fspdg~-----~Lasgs~Dg~I~IwDl~~~~~~~~---i~~l~~-h~~~V~sl~fspdg~ 676 (1915)
.+-...+.++|++++. ++++.+..+.|..|++........ ...+.+ +......|++..+|+
T Consensus 169 ----------~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~Gn 238 (314)
T d1pjxa_ 169 ----------TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNN 238 (314)
T ss_dssp ----------EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCC
T ss_pred ----------CCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCc
Confidence 0112346788988764 555567788999998853322111 112222 223467899999999
Q ss_pred EEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECC
Q psy9598 677 RFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAF 752 (1915)
Q Consensus 677 ~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~ 752 (1915)
++++....+.|.+||...+...... .......++++|.++++.|+++...+|.|..+++.
T Consensus 239 lyVa~~~~g~I~~~dp~~g~~~~~i----------------~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~ 298 (314)
T d1pjxa_ 239 LLVANWGSSHIEVFGPDGGQPKMRI----------------RCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ 298 (314)
T ss_dssp EEEEEETTTEEEEECTTCBSCSEEE----------------ECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred EEEEEcCCCEEEEEeCCCCEEEEEE----------------ECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECC
Confidence 8888888899999987765522111 11234578899999998777766557888888864
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.58 E-value=3.7e-06 Score=104.08 Aligned_cols=347 Identities=11% Similarity=0.024 Sum_probs=185.1
Q ss_pred EcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCC---CCCEEEEEEeCCCCEEEEEe---------CCCcEEEEECCCCc
Q psy9598 484 FDKLGEVIVTGADDLLIKLWRARDGKLLATLRGC---SGEISDIAIDNRNILLAAGT---------VDKTIRIWNLQTLA 551 (1915)
Q Consensus 484 fspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH---~~~I~~Lafspdg~~LaSgs---------~DgtIrVWDl~tg~ 551 (1915)
|.+++.++.. ..+|.|.+||+.++.....+..+ .-.+....||||+++|+.+. ..+.+.|+|+.++.
T Consensus 24 W~~~~~~~~~-~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~ 102 (465)
T d1xfda1 24 WISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGD 102 (465)
T ss_dssp BSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCC
T ss_pred EeCCCcEEEE-eCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCc
Confidence 5566665543 45678999999988764444432 23577888999999887764 34678999999887
Q ss_pred eEEEee--cCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCcc-cccccc-----CCCCCceEE
Q psy9598 552 PISVLV--GHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPV-MFNERI-----RPGNAHILC 623 (1915)
Q Consensus 552 ~~~~l~--~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~-~~~~~~-----~~~~~~V~~ 623 (1915)
...... .....+....|+|++ ..||... ++.|.+.+..++..+....-.... .+.... ..-.+.-..
T Consensus 103 ~~~l~~~~~~~~~l~~~~wSPDG----~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a 177 (465)
T d1xfda1 103 PQSLDPPEVSNAKLQYAGWGPKG----QQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIA 177 (465)
T ss_dssp CEECCCTTCCSCCCSBCCBCSST----TCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEE
T ss_pred eeeccCccCCccccceeeeccCC----ceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccce
Confidence 644322 234456678899954 7777765 566888877665433222111100 000000 000011246
Q ss_pred EEECCCCcEEEEEeCC-CeE---------------------------------EEEEecCCCCCceeEE---eccCCCCe
Q psy9598 624 SSFSPGGLFLATGSGD-HHV---------------------------------RVYKMDGVDSPLGILE---VEEHSDKV 666 (1915)
Q Consensus 624 l~fspdg~~Lasgs~D-g~I---------------------------------~IwDl~~~~~~~~i~~---l~~h~~~V 666 (1915)
+-|||||+.||....| ..| .|+|+.+......... .......+
T Consensus 178 ~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~ 257 (465)
T d1xfda1 178 HWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYI 257 (465)
T ss_dssp EEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEE
T ss_pred EEECCCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCcccccee
Confidence 7899999999876432 223 3333321111000000 01112236
Q ss_pred eEEEEcCCCCEEEEEeC-C---CcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEE--EE
Q psy9598 667 DSIQWSHSHLRFVSGSR-D---GTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVIT--AI 740 (1915)
Q Consensus 667 ~sl~fspdg~~L~sgs~-D---G~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t--~s 740 (1915)
..+.|++++.+++.... + ..|.++|..++++..+...... ... ...-....|+++|..++. ..
T Consensus 258 ~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~---~wv--------~~~~~~p~~~~dg~~~~fi~~s 326 (465)
T d1xfda1 258 TMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESE---AWL--------HRQNEEPVFSKDGRKFFFIRAI 326 (465)
T ss_dssp EEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECS---SCC--------CCCCCCCEECTTSCSEEEEEEE
T ss_pred eeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcCC---ceE--------eccCCceeEccCCCeeEEEEee
Confidence 77889999876555432 2 2578888888886654322111 000 001123568888875432 22
Q ss_pred ecCC--eEEEEECC------CCceEEEeeCCCCCeEEE-EEccCCCCEEEEEecCc--eEEEEEC--CCCccccceeeee
Q psy9598 741 NFNF--QIKIWDAF------NGDLVQVLKGHTNEVFVL-ESHPFDSRVLLSAGHDG--LIIIWDI--LSSKQRGYKWFHN 807 (1915)
Q Consensus 741 ~~Dg--~I~vwD~~------tg~~i~~l~gH~~~V~sl-~~sp~dg~~LaSgs~DG--~I~IWdl--~s~~~~~~~~~~~ 807 (1915)
..+| .++...+. .+..+..+....-.|..+ .|....+.+.+++..++ .-.||.+ ..+.. ...+.
T Consensus 327 e~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~--~~~lt- 403 (465)
T d1xfda1 327 PQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFN--RQCLS- 403 (465)
T ss_dssp CCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCC--CBCSS-
T ss_pred eecccCceEEEEeccccccCCCceeEEeccCCceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEECCCCCc--ceeec-
Confidence 2133 33333321 233444444444456665 57773334445555432 3334444 33322 11111
Q ss_pred eecCCCCcceEEEEEcCCCCEEEEEeCC---CeEEEEeCCCCccccc
Q psy9598 808 IVEGQGEGALFDGKWSPDGTTCALTDSY---GHLLVYGLGGFKRPQN 851 (1915)
Q Consensus 808 ~~~~~~~~~V~~vafSpdg~~Lasg~~d---G~I~Iwdl~s~~~~~~ 851 (1915)
......+...++.|||+|++++..++. -.+.|++..+++.+..
T Consensus 404 -~~~~~~~~~~~~~~S~~~~y~v~~~s~~~~P~~~~~~~~~~~~~~~ 449 (465)
T d1xfda1 404 -CDLVENCTYFSASFSHSMDFFLLKCEGPGVPMVTVHNTTDKKKMFD 449 (465)
T ss_dssp -TTSSSSCCCCEEEECTTSSEEEEECCSSSSCCEEEEETTTCCEEEE
T ss_pred -cccCCCCCEEEEEECCCCCEEEEEeecCCCCeEEEEECCCCCEEEE
Confidence 011233467799999999999876554 3466666666555443
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.56 E-value=7.8e-06 Score=92.58 Aligned_cols=236 Identities=12% Similarity=0.103 Sum_probs=140.9
Q ss_pred cEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCC---eEEEEecccCccccceeccCccccccccCCC
Q psy9598 541 TIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDG---CIGFWKYKLDIDISKTVFHEPVMFNERIRPG 617 (1915)
Q Consensus 541 tIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~Dg---tI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~ 617 (1915)
.|.|-|..... ...+..+...+.+.+|+|+ |+.||...... .+.+.+..++... .+..+
T Consensus 20 ~l~i~d~dG~~-~~~l~~~~~~~~sP~wSPD----Gk~IAf~~~~~~~~~~~~~~~~~~~~~-------------~~~~~ 81 (269)
T d2hqsa1 20 ELRVSDYDGYN-QFVVHRSPQPLMSPAWSPD----GSKLAYVTFESGRSALVIQTLANGAVR-------------QVASF 81 (269)
T ss_dssp EEEEEETTSCS-CEEEEEESSCEEEEEECTT----SSEEEEEECTTSSCEEEEEETTTCCEE-------------EEECC
T ss_pred EEEEEcCCCCC-cEEEecCCCceeeeEECCC----CCEEEEEEeeccCcceeeeecccCcee-------------EEeee
Confidence 57777876444 4444456777889999995 47777654433 3444454443211 11233
Q ss_pred CCceEEEEECCCCcEEEEEeC-CCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEE-EEeCCCcEEEEE--cc
Q psy9598 618 NAHILCSSFSPGGLFLATGSG-DHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFV-SGSRDGTALIWY--YK 693 (1915)
Q Consensus 618 ~~~V~~l~fspdg~~Lasgs~-Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~-sgs~DG~I~IWD--l~ 693 (1915)
.....+..|+|+|..|+.... .+...++...... ........+........+++++..++ +...+|...||. +.
T Consensus 82 ~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~ 159 (269)
T d2hqsa1 82 PRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLAS--GQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNIN 159 (269)
T ss_dssp SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTT--CCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT
T ss_pred ecccccceecCCCCeeeEeeecCCccceeeccccc--ccceeeeeccccccccccccccccceecccccCCceEeeeecc
Confidence 467788999999998887554 3333343332211 12223333444555566777776544 445566555554 33
Q ss_pred CCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEE--EEECCCCceEEEeeCCCCCeEEEE
Q psy9598 694 CSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIK--IWDAFNGDLVQVLKGHTNEVFVLE 771 (1915)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~--vwD~~tg~~i~~l~gH~~~V~sl~ 771 (1915)
..... .............|+|++..++..+...+... +.+...+.. .+..+........
T Consensus 160 ~~~~~-----------------~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~p~ 220 (269)
T d2hqsa1 160 GGAPQ-----------------RITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV--QVLSSTFLDETPS 220 (269)
T ss_dssp SSCCE-----------------ECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE--EECCCSSSCEEEE
T ss_pred cccce-----------------eeecccccccccccccccceeEEEeecCCceeeeEeecccccc--eEeecCccccceE
Confidence 33211 11223456677899999999998887455444 445544433 3444556678889
Q ss_pred EccCCCCEEEEEec---CceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcC
Q psy9598 772 SHPFDSRVLLSAGH---DGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSP 824 (1915)
Q Consensus 772 ~sp~dg~~LaSgs~---DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSp 824 (1915)
|+| ||+.|+..+. .+.|++|++..+.. .. +. ...+.+...+|||
T Consensus 221 ~SP-DG~~i~f~s~~~~~~~l~~~~~dg~~~--~~-lt-----~~~g~~~~p~WSP 267 (269)
T d2hqsa1 221 LAP-NGTMVIYSSSQGMGSVLNLVSTDGRFK--AR-LP-----ATDGQVKFPAWSP 267 (269)
T ss_dssp ECT-TSSEEEEEEEETTEEEEEEEETTSCCE--EE-CC-----CSSSEEEEEEECC
T ss_pred ECC-CCCEEEEEEcCCCCcEEEEEECCCCCE--EE-Ee-----CCCCcEEeEEeCC
Confidence 999 8988775543 45789999987654 22 21 2346778889998
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.55 E-value=2.3e-05 Score=91.59 Aligned_cols=251 Identities=10% Similarity=0.029 Sum_probs=155.3
Q ss_pred CEEEEEEeCCCCEEEEEeC-------CCcEEEEECCCCceEEEeecC----CCCeEEEEeccCccCCCcEEEEEeCCCeE
Q psy9598 520 EISDIAIDNRNILLAAGTV-------DKTIRIWNLQTLAPISVLVGH----QGIITGVNFCPLEVNGFNYLASTSTDGCI 588 (1915)
Q Consensus 520 ~I~~Lafspdg~~LaSgs~-------DgtIrVWDl~tg~~~~~l~~h----~~~V~sl~fsp~~~~d~~~L~sgs~DgtI 588 (1915)
..-.++|.++|+++++... ++.|..||..++......... .+....++|.++ ++.|+++...+.|
T Consensus 19 g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~d----g~~l~vad~~~~i 94 (314)
T d1pjxa_ 19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRD----ANQLFVADMRLGL 94 (314)
T ss_dssp TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSS----SSEEEEEETTTEE
T ss_pred CCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCC----CCEEEEEECCCeE
Confidence 3567899999998876533 467999999887655443322 233568999884 4677777776778
Q ss_pred EEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCC-------------CeEEEEEecCCCCCce
Q psy9598 589 GFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGD-------------HHVRVYKMDGVDSPLG 655 (1915)
Q Consensus 589 ~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~D-------------g~I~IwDl~~~~~~~~ 655 (1915)
..++..+............ . .-...+.++|.++|.+.++.... ..-.||-+.....
T Consensus 95 ~~~~~~g~~~~~~~~~~~g----~----~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg~--- 163 (314)
T d1pjxa_ 95 LVVQTDGTFEEIAKKDSEG----R----RMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQ--- 163 (314)
T ss_dssp EEEETTSCEEECCSBCTTS----C----BCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSC---
T ss_pred EEEeCCCcEEEEEeccccc----c----ccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecCc---
Confidence 8888765432110000000 0 01235678999999877764321 1113444421111
Q ss_pred eEEeccCCCCeeEEEEcCCCC-----EEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEEC
Q psy9598 656 ILEVEEHSDKVDSIQWSHSHL-----RFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWD 730 (1915)
Q Consensus 656 i~~l~~h~~~V~sl~fspdg~-----~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~s 730 (1915)
+..+..+-..-+.|+|++++. ++++-+..+.|..|++............ ... ..........++++
T Consensus 164 ~~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~-~~~--------~~~~~~~pdGiavD 234 (314)
T d1pjxa_ 164 MIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVW-GHI--------PGTHEGGADGMDFD 234 (314)
T ss_dssp EEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEE-EEC--------CCCSSCEEEEEEEB
T ss_pred eeEeeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEE-EEc--------cccccccceeeEEe
Confidence 112222333456889998765 4555567888888887644322110000 000 00112234578999
Q ss_pred CCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCC-EEEEEecCceEEEEECCC
Q psy9598 731 ASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSR-VLLSAGHDGLIIIWDILS 796 (1915)
Q Consensus 731 pdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~-~LaSgs~DG~I~IWdl~s 796 (1915)
.+|+..++... .+.|.+||...+..+..+..+...+++++|.| +++ +++|.+..|.|...++..
T Consensus 235 ~~GnlyVa~~~-~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~-d~~~lyVt~~~~g~i~~~~~~~ 299 (314)
T d1pjxa_ 235 EDNNLLVANWG-SSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKP-QTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp TTCCEEEEEET-TTEEEEECTTCBSCSEEEECSSSCEEEEEECT-TSSEEEEEETTTTEEEEEECSS
T ss_pred cCCcEEEEEcC-CCEEEEEeCCCCEEEEEEECCCCCEEEEEEeC-CCCEEEEEECCCCcEEEEECCC
Confidence 99987776655 89999999988888888877777889999999 775 667777889888888743
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.52 E-value=2.8e-05 Score=89.06 Aligned_cols=241 Identities=10% Similarity=0.043 Sum_probs=160.0
Q ss_pred CcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeC------CCCCEEEEEEeCCCC-EEEEE-eCCCcEEEEECC
Q psy9598 477 SAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRG------CSGEISDIAIDNRNI-LLAAG-TVDKTIRIWNLQ 548 (1915)
Q Consensus 477 ~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~g------H~~~I~~Lafspdg~-~LaSg-s~DgtIrVWDl~ 548 (1915)
..-..|+++++|+++++-.....|++||. +|..+..+.. ....-..+++..+.. ++++. +.++.|.+++.
T Consensus 23 ~~P~gvavd~dg~i~VaD~~n~rI~v~d~-~G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~- 100 (279)
T d1q7fa_ 23 TEPSGVAVNAQNDIIVADTNNHRIQIFDK-EGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ- 100 (279)
T ss_dssp SCEEEEEECTTCCEEEEEGGGTEEEEECT-TSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT-
T ss_pred CCccEEEEcCCCCEEEEECCCCEEEEEeC-CCCEEEEecccCCCcccccccccccccccccccceeccCCccccccccc-
Confidence 34689999999998888778889999996 5787777632 112345667666543 44433 34567777776
Q ss_pred CCceEEEee-cCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEEC
Q psy9598 549 TLAPISVLV-GHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFS 627 (1915)
Q Consensus 549 tg~~~~~l~-~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs 627 (1915)
.+.....+. .......++++.+ ++.++++....+.+.+++.... .+.... ...+......+++.
T Consensus 101 ~g~~~~~~~~~~~~~p~~~avd~----~G~i~v~~~~~~~~~~~~~~g~-~~~~~g----------~~~~~~~~~~i~~d 165 (279)
T d1q7fa_ 101 YGQFVRKFGATILQHPRGVTVDN----KGRIIVVECKVMRVIIFDQNGN-VLHKFG----------CSKHLEFPNGVVVN 165 (279)
T ss_dssp TSCEEEEECTTTCSCEEEEEECT----TSCEEEEETTTTEEEEECTTSC-EEEEEE----------CTTTCSSEEEEEEC
T ss_pred cccceeecCCCcccccceecccc----CCcEEEEeeccceeeEeccCCc-eeeccc----------ccccccccceeeec
Confidence 466666553 3445677888877 3477777777787888875432 111111 11234667889999
Q ss_pred CCCcEEEEEeCCCeEEEEEecCCCCCceeEEe--ccCCCCeeEEEEcCCCCEEEEEeC-CCcEEEEEccCCceEEeeecc
Q psy9598 628 PGGLFLATGSGDHHVRVYKMDGVDSPLGILEV--EEHSDKVDSIQWSHSHLRFVSGSR-DGTALIWYYKCSQWRFIRLDM 704 (1915)
Q Consensus 628 pdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l--~~h~~~V~sl~fspdg~~L~sgs~-DG~I~IWDl~~~~~~~~~~~~ 704 (1915)
++|..+++....+.|.+|+..+ ..+..+ .++.....+|++.++|+.+++-+. ++.|.+|+.. ++.+.....
T Consensus 166 ~~g~i~v~d~~~~~V~~~d~~G----~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~-G~~~~~~~~- 239 (279)
T d1q7fa_ 166 DKQEIFISDNRAHCVKVFNYEG----QYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-GQLISALES- 239 (279)
T ss_dssp SSSEEEEEEGGGTEEEEEETTC----CEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-SCEEEEEEE-
T ss_pred cceeEEeeeccccceeeeecCC----ceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECCC-CCEEEEEeC-
Confidence 9999999999999999999743 223333 345556889999999997777554 4568898743 443322110
Q ss_pred cccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCc
Q psy9598 705 NTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGD 755 (1915)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~ 755 (1915)
.........|++.++|.++ ++.. ++.|++|......
T Consensus 240 -------------~~~~~~p~~vav~~dG~l~-V~~~-n~~v~~fr~~~~~ 275 (279)
T d1q7fa_ 240 -------------KVKHAQCFDVALMDDGSVV-LASK-DYRLYIYRYVQLA 275 (279)
T ss_dssp -------------SSCCSCEEEEEEETTTEEE-EEET-TTEEEEEECSCCC
T ss_pred -------------CCCCCCEeEEEEeCCCcEE-EEeC-CCeEEEEEeeeec
Confidence 0112346788999998654 4555 8999999987654
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.47 E-value=0.0001 Score=85.98 Aligned_cols=239 Identities=10% Similarity=0.019 Sum_probs=150.9
Q ss_pred CCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCC----CcEEEEECCCC
Q psy9598 475 HLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVD----KTIRIWNLQTL 550 (1915)
Q Consensus 475 H~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~D----gtIrVWDl~tg 550 (1915)
....+-.++|+++|++.++-...+.|..|+..++.....+.........|+|+++|+++++...+ +.|...+..++
T Consensus 38 ~~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~ 117 (319)
T d2dg1a1 38 KGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGD 117 (319)
T ss_dssp SCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSC
T ss_pred CCcCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCc
Confidence 34456789999999988888889999999998887777776667788999999999988876432 33555555555
Q ss_pred ceEEEeecC--CCCeEEEEeccCccCCCcEEEEEeC------CCeEEEEecccCccccceeccCccccccccCCCCCceE
Q psy9598 551 APISVLVGH--QGIITGVNFCPLEVNGFNYLASTST------DGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHIL 622 (1915)
Q Consensus 551 ~~~~~l~~h--~~~V~sl~fsp~~~~d~~~L~sgs~------DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~ 622 (1915)
......... ...++.+++.+. +++.++... .+.+..++...... ..+. ..-...+
T Consensus 118 ~~~~~~~~~~~~~~~nd~~~d~~----G~l~vtd~~~~~~~~~g~v~~~~~dg~~~-~~~~------------~~~~~pn 180 (319)
T d2dg1a1 118 NLQDIIEDLSTAYCIDDMVFDSK----GGFYFTDFRGYSTNPLGGVYYVSPDFRTV-TPII------------QNISVAN 180 (319)
T ss_dssp SCEEEECSSSSCCCEEEEEECTT----SCEEEEECCCBTTBCCEEEEEECTTSCCE-EEEE------------EEESSEE
T ss_pred eeeeeccCCCcccCCcceeEEec----cceeecccccccccCcceeEEEeccccee-EEEe------------eccceee
Confidence 544433221 234677888874 455554322 12344443332211 1110 0113457
Q ss_pred EEEECCCCcEE-EEEeCCCeEEEEEecCCCCCceeE-----EeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCc
Q psy9598 623 CSSFSPGGLFL-ATGSGDHHVRVYKMDGVDSPLGIL-----EVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQ 696 (1915)
Q Consensus 623 ~l~fspdg~~L-asgs~Dg~I~IwDl~~~~~~~~i~-----~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~ 696 (1915)
.++|+++++.| ++-+..+.|..|++.......... ...........|++..+|++.++....|.|.+||.. ++
T Consensus 181 Gia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p~-G~ 259 (319)
T d2dg1a1 181 GIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKR-GY 259 (319)
T ss_dssp EEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTT-SC
T ss_pred eeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECCC-Cc
Confidence 89999999865 555667899999985432221111 111122335789999999998988899999999964 54
Q ss_pred eEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEe
Q psy9598 697 WRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAIN 741 (1915)
Q Consensus 697 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~ 741 (1915)
.+.... ++ .....+...+++++|.+++..++++..
T Consensus 260 ~l~~i~-----~P-----~~~~~~~~~~~~~~~~~~~~~~~~t~~ 294 (319)
T d2dg1a1 260 PIGQIL-----IP-----GRDEGHMLRSTHPQFIPGTNQLIICSN 294 (319)
T ss_dssp EEEEEE-----CT-----TGGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred EEEEEe-----CC-----CcCCCcCceeeeEEEeCCCCEEEEEcC
Confidence 332211 11 111234456778999998887777654
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.44 E-value=6.1e-05 Score=87.99 Aligned_cols=239 Identities=12% Similarity=0.012 Sum_probs=145.5
Q ss_pred CCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCC----CeEEEEecc
Q psy9598 519 GEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTD----GCIGFWKYK 594 (1915)
Q Consensus 519 ~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~D----gtI~iWDl~ 594 (1915)
..+-.++|.++|+++++-...+.|..|+..++.....+.........|+|.++ +.++++...+ +.|...+..
T Consensus 40 ~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~d----G~l~va~~~~~~~~~~i~~~~~~ 115 (319)
T d2dg1a1 40 LQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKD----GRLFVCYLGDFKSTGGIFAATEN 115 (319)
T ss_dssp CCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTT----SCEEEEECTTSSSCCEEEEECTT
T ss_pred cCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCC----CCEEEEecCCCccceeEEEEcCC
Confidence 34567999999998888778899999999887766666666677899999984 4666665432 334444443
Q ss_pred cCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCC----CeEEEEEecCCCCCceeEEeccCCCCeeEEE
Q psy9598 595 LDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGD----HHVRVYKMDGVDSPLGILEVEEHSDKVDSIQ 670 (1915)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~D----g~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~ 670 (1915)
+..... . .. .......+..+++.++|++.++.... ..-.+|-+.... ..+..+...-...+.|+
T Consensus 116 ~~~~~~-~-~~--------~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg--~~~~~~~~~~~~pnGia 183 (319)
T d2dg1a1 116 GDNLQD-I-IE--------DLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDF--RTVTPIIQNISVANGIA 183 (319)
T ss_dssp SCSCEE-E-EC--------SSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTS--CCEEEEEEEESSEEEEE
T ss_pred Cceeee-e-cc--------CCCcccCCcceeEEeccceeecccccccccCcceeEEEeccc--ceeEEEeeccceeeeee
Confidence 332111 1 11 00112457789999999866654321 122244332111 11222222334567899
Q ss_pred EcCCCCEE-EEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEE
Q psy9598 671 WSHSHLRF-VSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIW 749 (1915)
Q Consensus 671 fspdg~~L-~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vw 749 (1915)
|+++++.| ++-+..+.|..|++............ ..............++++.+|++.++... .+.|.+|
T Consensus 184 ~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~--------~~~~~~~~~~~PdGl~vD~~G~l~Va~~~-~g~V~~~ 254 (319)
T d2dg1a1 184 LSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGA--------TIPYYFTGHEGPDSCCIDSDDNLYVAMYG-QGRVLVF 254 (319)
T ss_dssp ECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEE--------EEEEECCSSSEEEEEEEBTTCCEEEEEET-TTEEEEE
T ss_pred eccccceEEEecccCCceEEEEEcCCCceeccccc--------eeeeccCCccceeeeeEcCCCCEEEEEcC-CCEEEEE
Confidence 99999866 55567788999987643211000000 00000011123457999999987766665 8999999
Q ss_pred ECCCCceEEEee------CCCCCeEEEEEccCCCCEEEEEe
Q psy9598 750 DAFNGDLVQVLK------GHTNEVFVLESHPFDSRVLLSAG 784 (1915)
Q Consensus 750 D~~tg~~i~~l~------gH~~~V~sl~~sp~dg~~LaSgs 784 (1915)
|. .|+.+..+. ++...+++++|.+ +...+++..
T Consensus 255 ~p-~G~~l~~i~~P~~~~~~~~~~~~~~~~~-~~~~~~~t~ 293 (319)
T d2dg1a1 255 NK-RGYPIGQILIPGRDEGHMLRSTHPQFIP-GTNQLIICS 293 (319)
T ss_dssp CT-TSCEEEEEECTTGGGTCSCBCCEEEECT-TSCEEEEEE
T ss_pred CC-CCcEEEEEeCCCcCCCcCceeeeEEEeC-CCCEEEEEc
Confidence 95 788888775 3445688999998 555555544
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.35 E-value=4.6e-05 Score=93.94 Aligned_cols=319 Identities=14% Similarity=0.100 Sum_probs=170.3
Q ss_pred EEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCC---CCeEEEEeccCccCCCcEEEEEe---------CCCeEEEE
Q psy9598 524 IAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQ---GIITGVNFCPLEVNGFNYLASTS---------TDGCIGFW 591 (1915)
Q Consensus 524 Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~---~~V~sl~fsp~~~~d~~~L~sgs---------~DgtI~iW 591 (1915)
+.|.+++.++.. ..+|.|.+||+.++.....+..+. ..+....|+|+ +++|+.++ ..|.+.++
T Consensus 22 ~~W~~~~~~~~~-~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD----~~~vl~~~~~~~~~r~s~~~~~~i~ 96 (465)
T d1xfda1 22 AKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPD----REYALFSYNVEPIYQHSYTGYYVLS 96 (465)
T ss_dssp CCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTT----SSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred CEEeCCCcEEEE-eCCCcEEEEECCCCCEEEEEcCccccccccceeEECCC----CCeEEEEEcccceeEeeccccEEEE
Confidence 468888876654 457889999999887755554433 36778889994 46766653 35788899
Q ss_pred ecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCC-------
Q psy9598 592 KYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSD------- 664 (1915)
Q Consensus 592 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~------- 664 (1915)
|+.++........ ......+....|||+|+.||... ++.|.+.+..+... ..+ +..+..+
T Consensus 97 d~~~~~~~~l~~~----------~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~-~~l-t~~g~~~~i~nG~~ 163 (465)
T d1xfda1 97 KIPHGDPQSLDPP----------EVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQA-IRV-VSTGKEGVIYNGLS 163 (465)
T ss_dssp ESSSCCCEECCCT----------TCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCC-EEE-ECCCBTTTEEEEEC
T ss_pred EccCCceeeccCc----------cCCccccceeeeccCCceEEEEe-cceEEEEecCCCce-EEE-ecccCcceeecccc
Confidence 9987753211111 11223455678999999988775 56777777643221 111 1122211
Q ss_pred ----------CeeEEEEcCCCCEEEEEeCC-CcEEEEEccCC--c----eEEe---------------eecccccCCCC-
Q psy9598 665 ----------KVDSIQWSHSHLRFVSGSRD-GTALIWYYKCS--Q----WRFI---------------RLDMNTCLPHT- 711 (1915)
Q Consensus 665 ----------~V~sl~fspdg~~L~sgs~D-G~I~IWDl~~~--~----~~~~---------------~~~~~~~~~~~- 711 (1915)
.-.++.|||+|.+||....| ..|..|.+... . .... ..+........
T Consensus 164 d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~ 243 (465)
T d1xfda1 164 DWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLE 243 (465)
T ss_dssp CHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEE
T ss_pred chhhhhhhccccceEEECCCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEE
Confidence 12477899999999887643 44555543210 0 0000 00000000000
Q ss_pred -ccccccccccccEEEEEECCCCCEEEEEEecC---CeEEEEECCCCceEEEeeCC-CCCe----EEEEEccCCCCEE--
Q psy9598 712 -KETSDETNKKIKVTMVAWDASDRWVITAINFN---FQIKIWDAFNGDLVQVLKGH-TNEV----FVLESHPFDSRVL-- 780 (1915)
Q Consensus 712 -~~~~~~~~~~~~V~~va~spdg~~L~t~s~~D---g~I~vwD~~tg~~i~~l~gH-~~~V----~sl~~sp~dg~~L-- 780 (1915)
............+..+.|++++.+++...+.+ ..|.++|..+|++...+..+ .+.| ....|++ +|..+
T Consensus 244 ~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~-dg~~~~f 322 (465)
T d1xfda1 244 MMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSK-DGRKFFF 322 (465)
T ss_dssp CCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECT-TSCSEEE
T ss_pred EeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEcc-CCCeeEE
Confidence 00001112233578899999998777665422 26888999999877665532 2222 2346777 66532
Q ss_pred EEEe-cCc--eEEEEECCCCcc----ccceeeeeeecCCCCcceEEE-EEcCCCCEEEEEeC-C----CeEEEEeCCCCc
Q psy9598 781 LSAG-HDG--LIIIWDILSSKQ----RGYKWFHNIVEGQGEGALFDG-KWSPDGTTCALTDS-Y----GHLLVYGLGGFK 847 (1915)
Q Consensus 781 aSgs-~DG--~I~IWdl~s~~~----~~~~~~~~~~~~~~~~~V~~v-afSpdg~~Lasg~~-d----G~I~Iwdl~s~~ 847 (1915)
+..+ .+| .+....+..... ..+..+. .+.-.|..+ +|+.++..|...+. + .+|+-.++.++.
T Consensus 323 i~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT-----~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~ 397 (465)
T d1xfda1 323 IRAIPQGGRGKFYHITVSSSQPNSSNDNIQSIT-----SGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNF 397 (465)
T ss_dssp EEEECCSSSSCEEEEEEECSSCCSSSCCCCBSC-----CSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTC
T ss_pred EEeeeecccCceEEEEeccccccCCCceeEEec-----cCCceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEECCCCC
Confidence 2222 222 333333221110 0011111 233345554 68898887765432 2 245555555443
Q ss_pred ccccCC---------CceeecCCCCeee
Q psy9598 848 RPQNIP---------RELFFHTDYRTLN 866 (1915)
Q Consensus 848 ~~~~l~---------~~~~F~~d~~~Lv 866 (1915)
....+. ..+.|++++..++
T Consensus 398 ~~~~lt~~~~~~~~~~~~~~S~~~~y~v 425 (465)
T d1xfda1 398 NRQCLSCDLVENCTYFSASFSHSMDFFL 425 (465)
T ss_dssp CCBCSSTTSSSSCCCCEEEECTTSSEEE
T ss_pred cceeeccccCCCCCEEEEEECCCCCEEE
Confidence 322222 1556777777665
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.85 E-value=0.0039 Score=71.19 Aligned_cols=223 Identities=10% Similarity=-0.068 Sum_probs=139.4
Q ss_pred EEEEcC-CCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecC
Q psy9598 481 CVLFDK-LGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGH 559 (1915)
Q Consensus 481 ~vafsp-dg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h 559 (1915)
+..|++ +|.+.++--..+.|..||..++... .+. ....+.++++.++|.++++ +.+ -|.++|..+++........
T Consensus 22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~-~~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~~~~ 97 (295)
T d2ghsa1 22 GPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAELE 97 (295)
T ss_dssp EEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEECSS
T ss_pred CCeEECCCCEEEEEECCCCEEEEEECCCCeEE-EEE-CCCCcEEEEEecCCCEEEE-EeC-ccEEeecccceeeEEeeee
Confidence 456776 4555555556789999999888654 332 3457899999999977775 444 5889999988765433211
Q ss_pred ----CCCeEEEEeccCccCCCcEEEEEeC----CCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCc
Q psy9598 560 ----QGIITGVNFCPLEVNGFNYLASTST----DGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGL 631 (1915)
Q Consensus 560 ----~~~V~sl~fsp~~~~d~~~L~sgs~----DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~ 631 (1915)
...++.+.+.|. +++.++... .+.-.+|.+..+...... ..-...+.++|++++.
T Consensus 98 ~~~~~~~~nd~~vd~~----G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~-------------~~~~~~Ng~~~s~d~~ 160 (295)
T d2ghsa1 98 SDLPGNRSNDGRMHPS----GALWIGTMGRKAETGAGSIYHVAKGKVTKLF-------------ADISIPNSICFSPDGT 160 (295)
T ss_dssp TTCTTEEEEEEEECTT----SCEEEEEEETTCCTTCEEEEEEETTEEEEEE-------------EEESSEEEEEECTTSC
T ss_pred cCCCcccceeeEECCC----CCEEEEeccccccccceeEeeecCCcEEEEe-------------eccCCcceeeecCCCc
Confidence 124778888774 355554432 223445555444211111 0113457899999998
Q ss_pred EE-EEEeCCCeEEEEEecCCCC-----CceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeeccc
Q psy9598 632 FL-ATGSGDHHVRVYKMDGVDS-----PLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMN 705 (1915)
Q Consensus 632 ~L-asgs~Dg~I~IwDl~~~~~-----~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~ 705 (1915)
.+ ++.+..+.|..|+++.... ......+.+..+....+++..+|++.++.-..|.|..||.. ++.+....
T Consensus 161 ~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp~-G~~~~~i~--- 236 (295)
T d2ghsa1 161 TGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD-GNHIARYE--- 236 (295)
T ss_dssp EEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT-CCEEEEEE---
T ss_pred eEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecCC-CcEeeEec---
Confidence 65 4555678899998853221 11222334455668899999999988887788899999865 44322110
Q ss_pred ccCCCCccccccccccccEEEEEEC-CCCCEEEEEEe
Q psy9598 706 TCLPHTKETSDETNKKIKVTMVAWD-ASDRWVITAIN 741 (1915)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~V~~va~s-pdg~~L~t~s~ 741 (1915)
.....+++++|- ++...|++++.
T Consensus 237 -------------lP~~~~T~~~FGG~d~~~LyvTta 260 (295)
T d2ghsa1 237 -------------VPGKQTTCPAFIGPDASRLLVTSA 260 (295)
T ss_dssp -------------CSCSBEEEEEEESTTSCEEEEEEB
T ss_pred -------------CCCCceEEEEEeCCCCCEEEEEEC
Confidence 012357899995 67777766554
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.76 E-value=0.0088 Score=69.61 Aligned_cols=271 Identities=10% Similarity=0.043 Sum_probs=158.9
Q ss_pred EEEEECCCcEEEEECCCCcEEEEEeCCC---------------------------------------CCE--EEEEEeC-
Q psy9598 491 IVTGADDLLIKLWRARDGKLLATLRGCS---------------------------------------GEI--SDIAIDN- 528 (1915)
Q Consensus 491 LaTGs~Dg~I~IWd~~tg~~~~~l~gH~---------------------------------------~~I--~~Lafsp- 528 (1915)
+.+|+..|.|+|+-+.+++.+..+.-.+ +.. -.+++..
T Consensus 16 f~SgG~sG~v~v~G~PSmR~l~~ipvF~~~~~~G~G~~~es~~il~~~~~~~t~~~l~~~g~~~~~~GD~HHP~~S~TdG 95 (459)
T d1fwxa2 16 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG 95 (459)
T ss_dssp EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCC--------------CCCCCBCCEEEEEETT
T ss_pred EeeCCccceEEEEecCCcceEEEeeeecCCCCcccCcchhHHHHhhcccChhhhhhhhccCcccccCCCcCCCcccccCC
Confidence 4567778888888888777776653110 011 1455544
Q ss_pred --CCCEEEEEe-CCCcEEEEECCCCceEEEeec-CCCCeEEEEeccCccCCCcEEEEEeCCC------------------
Q psy9598 529 --RNILLAAGT-VDKTIRIWNLQTLAPISVLVG-HQGIITGVNFCPLEVNGFNYLASTSTDG------------------ 586 (1915)
Q Consensus 529 --dg~~LaSgs-~DgtIrVWDl~tg~~~~~l~~-h~~~V~sl~fsp~~~~d~~~L~sgs~Dg------------------ 586 (1915)
||++|+... .++.|-+-|+.+.++...+.. ....+..+...+.. +..++++++.+.
T Consensus 96 tyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p--~T~YV~~~~e~~vP~pndg~~l~d~~~y~~ 173 (459)
T d1fwxa2 96 KYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWP--RSNYVFCNGEDETPLVNDGTNMEDVANYVN 173 (459)
T ss_dssp EEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSS--BCSEEEEEECSCEESSCSSSSTTCGG-EEE
T ss_pred ccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCC--CeEEEEccCccccccCCCCccccchhhcce
Confidence 788888776 578999999999998765543 33455666655432 346777766533
Q ss_pred eEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCC---------------eEEEEEec---
Q psy9598 587 CIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDH---------------HVRVYKMD--- 648 (1915)
Q Consensus 587 tI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg---------------~I~IwDl~--- 648 (1915)
.+.++|..+.......... +....+.++++|+++++.+.+. .+.++++.
T Consensus 174 ~~t~ID~~tm~V~~QV~V~-------------g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie 240 (459)
T d1fwxa2 174 VFTAVDADKWEVAWQVLVS-------------GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIE 240 (459)
T ss_dssp EEEEEETTTTEEEEEEEES-------------SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHH
T ss_pred EEEEEecCCceEEEEeeeC-------------CChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhH
Confidence 3566777766554444333 3455789999999988876431 23344431
Q ss_pred --------------------CCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEe-CCCcEEEEEccCCceEEeeeccccc
Q psy9598 649 --------------------GVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGS-RDGTALIWYYKCSQWRFIRLDMNTC 707 (1915)
Q Consensus 649 --------------------~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs-~DG~I~IWDl~~~~~~~~~~~~~~~ 707 (1915)
.......+..+.. ......+.++|||.++++++ .+.++.|+|+....-.. ...
T Consensus 241 ~av~~Gk~~eingV~VVD~~~~~~~~v~~yIPV-pKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~-----~~~ 314 (459)
T d1fwxa2 241 KAIAAGDYQELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVF-----YEN 314 (459)
T ss_dssp HHHHHTCSEEETTEEEEECSGG--CSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHH-----HSC
T ss_pred HhhhcCCcEEeCCceeecccccCCcceeEEEec-CCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhh-----ccc
Confidence 1001111111111 12345788999999877655 78999999987432110 000
Q ss_pred CCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCC----------CceEEEeeCCCCCeEEEE-----E
Q psy9598 708 LPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFN----------GDLVQVLKGHTNEVFVLE-----S 772 (1915)
Q Consensus 708 ~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~t----------g~~i~~l~gH~~~V~sl~-----~ 772 (1915)
................-...+|+..| ..+++.-.|..|.-|++.. ...+..+.-|-..=...+ .
T Consensus 315 ~~~~~~~~~e~elglgPLht~fd~~g-~aytslfids~v~kw~~~~~~~~~~~~~~~~v~~k~~v~y~~gh~~~~~g~t~ 393 (459)
T d1fwxa2 315 ADPRSAVVAEPELGLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETL 393 (459)
T ss_dssp C-GGGGEEECCBCCSCEEEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTST
T ss_pred CCccccEEeecccCcCccccccCCCc-eEEEEeeccceEEEEecchhhhhhccccCCcceeccccccCCCCCccCcCCcC
Confidence 00011111222334556678899887 5777776699999999742 245556655543221111 2
Q ss_pred ccCCCCEEEEEe
Q psy9598 773 HPFDSRVLLSAG 784 (1915)
Q Consensus 773 sp~dg~~LaSgs 784 (1915)
.| +|++|++..
T Consensus 394 ~~-dgk~l~~~n 404 (459)
T d1fwxa2 394 DA-TNDWLVCLS 404 (459)
T ss_dssp TC-CSSEEEEEE
T ss_pred CC-CCCEEEEec
Confidence 45 788888875
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.75 E-value=0.0076 Score=68.72 Aligned_cols=232 Identities=10% Similarity=-0.005 Sum_probs=140.1
Q ss_pred EEEEeCC-CCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccc
Q psy9598 523 DIAIDNR-NILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISK 601 (1915)
Q Consensus 523 ~Lafspd-g~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~ 601 (1915)
+..|++. +.++.+--..+.|..||..++... .+ .....+.++++.++ +.+++ ++.+| |.++|..++.....
T Consensus 22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~-~~~~~~~~i~~~~d----g~l~v-a~~~g-l~~~d~~tg~~~~l 93 (295)
T d2ghsa1 22 GPTFDPASGTAWWFNILERELHELHLASGRKT-VH-ALPFMGSALAKISD----SKQLI-ASDDG-LFLRDTATGVLTLH 93 (295)
T ss_dssp EEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EE-ECSSCEEEEEEEET----TEEEE-EETTE-EEEEETTTCCEEEE
T ss_pred CCeEECCCCEEEEEECCCCEEEEEECCCCeEE-EE-ECCCCcEEEEEecC----CCEEE-EEeCc-cEEeecccceeeEE
Confidence 4557764 444455446788999999887643 22 23456788888773 35554 45554 88899887753211
Q ss_pred eeccCccccccccCCCCCceEEEEECCCCcEEEEEeC----CCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCE
Q psy9598 602 TVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSG----DHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLR 677 (1915)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~----Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~ 677 (1915)
.... .......++.+.+.++|++.++... .+.-.+|.+... .+..+...-.....++|++++..
T Consensus 94 ~~~~--------~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g----~~~~~~~~~~~~Ng~~~s~d~~~ 161 (295)
T d2ghsa1 94 AELE--------SDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKG----KVTKLFADISIPNSICFSPDGTT 161 (295)
T ss_dssp ECSS--------TTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETT----EEEEEEEEESSEEEEEECTTSCE
T ss_pred eeee--------cCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCC----cEEEEeeccCCcceeeecCCCce
Confidence 1110 0011245788999999987665432 234456666322 12222223345678999999986
Q ss_pred EE-EEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCce
Q psy9598 678 FV-SGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDL 756 (1915)
Q Consensus 678 L~-sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~ 756 (1915)
|+ +-+..+.|..|++....... ...................++++.+|.+.++.-. .+.|.+||. .|+.
T Consensus 162 l~~~dt~~~~I~~~~~d~~~~~~--------~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~-~g~V~~~dp-~G~~ 231 (295)
T d2ghsa1 162 GYFVDTKVNRLMRVPLDARTGLP--------TGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWG-EGAVDRYDT-DGNH 231 (295)
T ss_dssp EEEEETTTCEEEEEEBCTTTCCB--------SSCCEEEEECTTSSSEEEEEEECTTSCEEEEEET-TTEEEEECT-TCCE
T ss_pred EEEeecccceeeEeeeccccccc--------ccceEEEeccCcccccccceEEcCCCCEEeeeeC-CCceEEecC-CCcE
Confidence 55 55567788888765322100 0000001111223445678899999987776655 789999995 6899
Q ss_pred EEEeeCCCCCeEEEEEccCCCC-EEEEEe
Q psy9598 757 VQVLKGHTNEVFVLESHPFDSR-VLLSAG 784 (1915)
Q Consensus 757 i~~l~gH~~~V~sl~~sp~dg~-~LaSgs 784 (1915)
+..+.-....+++++|-..+.+ +++|..
T Consensus 232 ~~~i~lP~~~~T~~~FGG~d~~~LyvTta 260 (295)
T d2ghsa1 232 IARYEVPGKQTTCPAFIGPDASRLLVTSA 260 (295)
T ss_dssp EEEEECSCSBEEEEEEESTTSCEEEEEEB
T ss_pred eeEecCCCCceEEEEEeCCCCCEEEEEEC
Confidence 9988876677999999743544 445544
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=97.65 E-value=0.0014 Score=73.47 Aligned_cols=95 Identities=15% Similarity=0.077 Sum_probs=65.8
Q ss_pred EEcCC--CCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeC-C-----CcEEEEECCCCceEE
Q psy9598 483 LFDKL--GEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTV-D-----KTIRIWNLQTLAPIS 554 (1915)
Q Consensus 483 afspd--g~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~-D-----gtIrVWDl~tg~~~~ 554 (1915)
..+|+ |+.||-.+ +|.|.+.|+.++... .|..+.+.+...+|||||+.||..+. + ..|.++++.++....
T Consensus 5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~ 82 (281)
T d1k32a2 5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGSTR-KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKR 82 (281)
T ss_dssp CEEEEEETTEEEEEE-TTEEEEEETTTCCEE-EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEE
T ss_pred ccCCCCCCCEEEEEe-CCcEEEEECCCCCEE-EEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEE
Confidence 35788 98888765 457888899888765 46667788999999999999886542 2 247778887776554
Q ss_pred Eee------cCCCCeEEEEeccCccCCCcEEEEEe
Q psy9598 555 VLV------GHQGIITGVNFCPLEVNGFNYLASTS 583 (1915)
Q Consensus 555 ~l~------~h~~~V~sl~fsp~~~~d~~~L~sgs 583 (1915)
... ........+.|+|+ ++.|+...
T Consensus 83 lt~~~~~~~~~~~~~~~~~~spd----g~~l~~~~ 113 (281)
T d1k32a2 83 ITYFSGKSTGRRMFTDVAGFDPD----GNLIISTD 113 (281)
T ss_dssp CCCCCEEEETTEECSEEEEECTT----CCEEEEEC
T ss_pred eeecCCCccCccccccccccCCC----CCEEEEEE
Confidence 321 12234567889884 46666543
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=97.62 E-value=0.0071 Score=75.76 Aligned_cols=112 Identities=11% Similarity=-0.010 Sum_probs=69.4
Q ss_pred CCEEEEEECCCcEEEEECCCCcEEEEEeCCC----------CCE-EEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEe
Q psy9598 488 GEVIVTGADDLLIKLWRARDGKLLATLRGCS----------GEI-SDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVL 556 (1915)
Q Consensus 488 g~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~----------~~I-~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l 556 (1915)
+..|++++.++.|.-+|..||+.+..+.... ..+ ..+.+. +..++.++.|+.+.-.|..+|+.+...
T Consensus 77 ~g~vyv~t~~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~v~~~t~~g~l~alda~tG~~~W~~ 154 (573)
T d1kb0a2 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALW--KGKVYVGAWDGRLIALDAATGKEVWHQ 154 (573)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEE--CCcEEEEecccceeeeccccccceecc
Confidence 3467778889999999999999998874221 111 122232 235777788999999999999988765
Q ss_pred ecCCCCe--EEEEeccCccCCCcEEEEEeC------CCeEEEEecccCcccccee
Q psy9598 557 VGHQGII--TGVNFCPLEVNGFNYLASTST------DGCIGFWKYKLDIDISKTV 603 (1915)
Q Consensus 557 ~~h~~~V--~sl~fsp~~~~d~~~L~sgs~------DgtI~iWDl~~~~~~~~~~ 603 (1915)
....... ..+.-.|.- -...+++++. .|.|..+|..+++.+....
T Consensus 155 ~~~~~~~~~~~~~~~p~v--~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~ 207 (573)
T d1kb0a2 155 NTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWF 207 (573)
T ss_dssp ETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred cCccCCcceEEeecceEE--EeccEEEeeccccccccceEEEEecCCccceeeee
Confidence 4321111 111111110 1134555443 4689999999998766543
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=97.60 E-value=0.0067 Score=75.77 Aligned_cols=332 Identities=9% Similarity=-0.017 Sum_probs=174.0
Q ss_pred CCEEEEEECCCcEEEEECCCCcEEEEEeCCCC----------CE-EEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEe
Q psy9598 488 GEVIVTGADDLLIKLWRARDGKLLATLRGCSG----------EI-SDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVL 556 (1915)
Q Consensus 488 g~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~----------~I-~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l 556 (1915)
+..|+.++.++.|.-.|..||+.+..+..... .+ ..++.. +..|+.++.|+.|.-.|..+|+.+...
T Consensus 66 ~g~vyv~t~~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~g~l~Alda~tG~~~w~~ 143 (560)
T d1kv9a2 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALW--GDKVYVGTLDGRLIALDAKTGKAIWSQ 143 (560)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEE--BTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEeCCCCCEEEEECCCCCccccccccccccccCccee--CCeEEEEeCCCEEEEEECCCCcEEecc
Confidence 45777788899999999999999998742211 01 112221 346888889999999999999998877
Q ss_pred ecCCC-CeEEEEeccCccCCCcEEEEEeC------CCeEEEEecccCccccceeccCcccccc-----------------
Q psy9598 557 VGHQG-IITGVNFCPLEVNGFNYLASTST------DGCIGFWKYKLDIDISKTVFHEPVMFNE----------------- 612 (1915)
Q Consensus 557 ~~h~~-~V~sl~fsp~~~~d~~~L~sgs~------DgtI~iWDl~~~~~~~~~~~~~~~~~~~----------------- 612 (1915)
..+.. .-..+.-.|.- ....++.++. .|.|.-+|..+++.+.......+.....
T Consensus 144 ~~~~~~~~~~~~~~p~v--~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (560)
T d1kv9a2 144 QTTDPAKPYSITGAPRV--VKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQ 221 (560)
T ss_dssp ECSCTTSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSC
T ss_pred CccCcccceeeeeeeee--ecCcccccccceeccccceEEEEECCCceEEeeeeeccccccCCccccccccccccccccc
Confidence 53221 11111111111 1134444432 3679999999998776654321110000
Q ss_pred --ccCCCCCceEEEEECCCCcEEEEEeCC-------------------CeEEEEEecCCCCCceeEEeccCCCC------
Q psy9598 613 --RIRPGNAHILCSSFSPGGLFLATGSGD-------------------HHVRVYKMDGVDSPLGILEVEEHSDK------ 665 (1915)
Q Consensus 613 --~~~~~~~~V~~l~fspdg~~Lasgs~D-------------------g~I~IwDl~~~~~~~~i~~l~~h~~~------ 665 (1915)
....+...-..+++.+...+++.+..+ ..|.-.|+. +......++.....
T Consensus 222 ~~~~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~sivAld~~---tG~~~W~~Q~~~~D~wd~d~ 298 (560)
T d1kv9a2 222 YWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPD---TGKLAWHYQVTPGDSWDFTA 298 (560)
T ss_dssp HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTT---TCCEEEEEESSTTCCSCCCC
T ss_pred cccccCCCCcccccccccccCeeeecCCCCcccccccccccCCccccceeeEEecCC---ccceeEEEeccccccccccc
Confidence 000000111234556665555544321 123333432 22222222211111
Q ss_pred ---eeEEEEcCCCC---EEEEEeCCCcEEEEEccCCceEEeeecccccC-------CCCccc-------------ccccc
Q psy9598 666 ---VDSIQWSHSHL---RFVSGSRDGTALIWYYKCSQWRFIRLDMNTCL-------PHTKET-------------SDETN 719 (1915)
Q Consensus 666 ---V~sl~fspdg~---~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~-------~~~~~~-------------~~~~~ 719 (1915)
..-+.+..++. .++.++.+|.+.++|..+++.+.......... ...... .....
T Consensus 299 ~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~ 378 (560)
T d1kv9a2 299 TQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPF 378 (560)
T ss_dssp CSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTT
T ss_pred cceeeeeeeecCCceeeeeeecCccceEEEEecCCCcccccccccccccccccChhhccccccccccccccceeeeeccc
Confidence 11122222343 56778899999999999998654321110000 000000 00000
Q ss_pred ccccEEEEEECCCCCEEEEEEec-----------------------------------CCeEEEEECCCCceEEEeeCCC
Q psy9598 720 KKIKVTMVAWDASDRWVITAINF-----------------------------------NFQIKIWDAFNGDLVQVLKGHT 764 (1915)
Q Consensus 720 ~~~~V~~va~spdg~~L~t~s~~-----------------------------------Dg~I~vwD~~tg~~i~~l~gH~ 764 (1915)
....-...+++|+...+++.... .|.|.-||+.+|+.+-.+....
T Consensus 379 Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~G~l~A~D~~tGk~~W~~~~~~ 458 (560)
T d1kv9a2 379 GAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPT 458 (560)
T ss_dssp CSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESS
T ss_pred cccccccccccCCCCeeecccccccceeeccccccccccccccccCcccccCCCCcccccceEEEeCCCCeEeeeccCCC
Confidence 00111245667777666654430 2468889999998887765221
Q ss_pred CCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCC-EEEEEeC
Q psy9598 765 NEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGT-TCALTDS 834 (1915)
Q Consensus 765 ~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~-~Lasg~~ 834 (1915)
...+-.+.- .+.++++|+.||.++.+|..+|+. +-.+. +.....+.. +.+..+|+ +|++...
T Consensus 459 -~~~gg~l~T-agglVF~G~~dg~l~A~Da~tGe~--LW~~~--l~~~~~~~P--~ty~~dGkqyv~v~aG 521 (560)
T d1kv9a2 459 -HWNGGTLST-AGNLVFQGTAAGQMHAYSADKGEA--LWQFE--AQSGIVAAP--MTFELAGRQYVAIMAG 521 (560)
T ss_dssp -SCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCE--EEEEE--CSSCCCSCC--EEEEETTEEEEEEEEC
T ss_pred -CCCCceeEE-CCCEEEEECCCCcEEEEECCCCcE--eEEEE--CCCCccccC--EEEEECCEEEEEEEeC
Confidence 111111222 467888999999999999999999 66655 222222222 44556785 5555443
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=97.49 E-value=0.0041 Score=69.38 Aligned_cols=234 Identities=12% Similarity=0.050 Sum_probs=119.3
Q ss_pred EEeCC--CCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeC-CC-----eEEEEecccC
Q psy9598 525 AIDNR--NILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTST-DG-----CIGFWKYKLD 596 (1915)
Q Consensus 525 afspd--g~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~-Dg-----tI~iWDl~~~ 596 (1915)
.++|+ |+.||-.+ ++.|.+.|+.++... .|..+.+.+...+|+|+ ++.|+..+. ++ .|.+++..++
T Consensus 5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SPD----G~~iaf~~~~~~~~~~~~i~~~~~~~g 78 (281)
T d1k32a2 5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGSTR-KIVSNLGVINNARFFPD----GRKIAIRVMRGSSLNTADLYFYNGENG 78 (281)
T ss_dssp CEEEEEETTEEEEEE-TTEEEEEETTTCCEE-EEECSSSEEEEEEECTT----SSEEEEEEEESTTCCEEEEEEEETTTT
T ss_pred ccCCCCCCCEEEEEe-CCcEEEEECCCCCEE-EEecCCCcccCEEECCC----CCEEEEEEeeCCCCCceEEEEEEecCC
Confidence 46788 88887665 567888899988764 56667788899999994 477775532 22 3666666655
Q ss_pred ccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCC------CeEEEEEecCCCCCceeEEeccCCCCeeEEE
Q psy9598 597 IDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGD------HHVRVYKMDGVDSPLGILEVEEHSDKVDSIQ 670 (1915)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~D------g~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~ 670 (1915)
......... ..............|+|+|+.|+..... ..+.+.+..+. ... ..+......+.
T Consensus 79 ~~~~lt~~~------~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~----~~~--~~~~~~~~~~~ 146 (281)
T d1k32a2 79 EIKRITYFS------GKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGI----NFV--PLNLGPATHIL 146 (281)
T ss_dssp EEEECCCCC------EEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGT----EEE--ECCSCSCSEEE
T ss_pred ceEEeeecC------CCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCc----eeE--EecCCccceee
Confidence 432111110 0001112345678999999988875332 12333343211 111 11222233333
Q ss_pred EcCCCCEEEEEeCCCc-----------EEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEE
Q psy9598 671 WSHSHLRFVSGSRDGT-----------ALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITA 739 (1915)
Q Consensus 671 fspdg~~L~sgs~DG~-----------I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~ 739 (1915)
+.+.+..++....... ..++....... ..............++++ .++..
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~--~~~~~ 207 (281)
T d1k32a2 147 FADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAF-----------------KKIVDMSTHVSSPVIVGH--RIYFI 207 (281)
T ss_dssp EETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEE-----------------EEEECCSSCCEEEEEETT--EEEEE
T ss_pred ecCCCeEEEeeccccceeeeeccCCcceeeeeccccce-----------------eeccCCccccceeeeecc--cccee
Confidence 3333333332222110 11111111100 001112222334445544 33333
Q ss_pred Ee--cCCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCcc
Q psy9598 740 IN--FNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQ 799 (1915)
Q Consensus 740 s~--~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~ 799 (1915)
.. ....|.++|+.++............ ...|+| +|+.|+. ..+|.|+++|+.+++.
T Consensus 208 ~~~~~~~~l~~~d~~g~~~~~lt~~~~~~--~~~~Sp-DG~~I~f-~~~~~l~~~d~~~g~~ 265 (281)
T d1k32a2 208 TDIDGFGQIYSTDLDGKDLRKHTSFTDYY--PRHLNT-DGRRILF-SKGGSIYIFNPDTEKI 265 (281)
T ss_dssp ECTTSSCEEEEEETTSCSCEECCCCCSSC--EEEEEE-SSSCEEE-EETTEEEEECTTTCCE
T ss_pred cccccccceEEEeCCCCceEEeecCCCcc--cccCcC-CCCEEEE-EeCCEEEEEECCCCCE
Confidence 32 2346888888776654433333323 346889 7776664 4468899999988876
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=97.40 E-value=0.031 Score=69.95 Aligned_cols=332 Identities=12% Similarity=0.051 Sum_probs=170.6
Q ss_pred CCEEEEEECCCcEEEEEC-CCCcEEEEEeCCC----------CCE-EEEEEeCC----CCEEEEEeCCCcEEEEECCCCc
Q psy9598 488 GEVIVTGADDLLIKLWRA-RDGKLLATLRGCS----------GEI-SDIAIDNR----NILLAAGTVDKTIRIWNLQTLA 551 (1915)
Q Consensus 488 g~~LaTGs~Dg~I~IWd~-~tg~~~~~l~gH~----------~~I-~~Lafspd----g~~LaSgs~DgtIrVWDl~tg~ 551 (1915)
|.++++++.++.|...|. .||+.+..+.... ..+ ..|++.++ ..+|+.++.|+.|.-.|..+|+
T Consensus 63 g~ly~~t~~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~~~~~RGv~~~~~~~~~~~~v~~~t~dg~l~Alda~tG~ 142 (596)
T d1w6sa_ 63 GKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGE 142 (596)
T ss_dssp TEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCC
T ss_pred CEEEEeeCCCCcEEEEeCCCCCCEEEEecCCCCcccccccccccccceeEEecCCCCCceEEEEEeCCCCeEeeccccCc
Confidence 444444555677888886 5899998874211 011 23455433 3478889999999999999999
Q ss_pred eEEEeecCC-CCeEEEEeccCccCCCcEEEEEeC------CCeEEEEecccCccccceeccCcccc--------------
Q psy9598 552 PISVLVGHQ-GIITGVNFCPLEVNGFNYLASTST------DGCIGFWKYKLDIDISKTVFHEPVMF-------------- 610 (1915)
Q Consensus 552 ~~~~l~~h~-~~V~sl~fsp~~~~d~~~L~sgs~------DgtI~iWDl~~~~~~~~~~~~~~~~~-------------- 610 (1915)
.+..+.... ..-..+.-.|.- -...++.|+. .|.|.-+|+.+++.+.......+...
T Consensus 143 ~~w~~~~~d~~~~~~~t~~P~v--~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~ 220 (596)
T d1w6sa_ 143 TVWKVENSDIKVGSTLTIAPYV--VKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHY 220 (596)
T ss_dssp EEEEEECCCGGGTCBCCSCCEE--ETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGG
T ss_pred eeccccccccccccccccCCcE--ECCeEEEeeccccccccCceEEEECCCCcEEEEeeccCCccccccccccccccccc
Confidence 988775321 100111112211 1245566543 48999999999987765433211000
Q ss_pred ------------ccccCCCCCceEEEEECCCCcEEEEEeCC----------------CeEEEEEecCCCCCceeEEec--
Q psy9598 611 ------------NERIRPGNAHILCSSFSPGGLFLATGSGD----------------HHVRVYKMDGVDSPLGILEVE-- 660 (1915)
Q Consensus 611 ------------~~~~~~~~~~V~~l~fspdg~~Lasgs~D----------------g~I~IwDl~~~~~~~~i~~l~-- 660 (1915)
..........-..+++.+...++..+..+ ..|...|+.+ ...+..++
T Consensus 221 g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~sivAlD~~T---G~~~W~~Q~~ 297 (596)
T d1w6sa_ 221 GQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADT---GEAKFGYQKT 297 (596)
T ss_dssp CCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTT---CCEEEEEESS
T ss_pred cccccccccCCCCceecCCCccccccccccCCCeeeccccccccccccccccccccccccccccccc---ccccccccce
Confidence 00001111112234556655555555332 2344555522 22222222
Q ss_pred cCCC-------CeeEEE-EcCCCC---EEEEEeCCCcEEEEEccCCceEEeeecccccC--------CCCcc---c-c--
Q psy9598 661 EHSD-------KVDSIQ-WSHSHL---RFVSGSRDGTALIWYYKCSQWRFIRLDMNTCL--------PHTKE---T-S-- 715 (1915)
Q Consensus 661 ~h~~-------~V~sl~-fspdg~---~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~--------~~~~~---~-~-- 715 (1915)
.|.. .+..+. ...+|. .++.+..+|.+.++|..+++.+.......... ..... . .
T Consensus 298 ~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~~i~~~~~~~~~~~~~~~d~~~~~p~~~~~~~~~ 377 (596)
T d1w6sa_ 298 PHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTR 377 (596)
T ss_dssp TTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCC
T ss_pred eccccCCccccceeeeeccccccccccceeccccccceeeecCCCCceeeeccccccccccccccccccccccCcccccc
Confidence 1211 111111 123443 57788899999999999998664321100000 00000 0 0
Q ss_pred ---------ccccccccEEEEEECCCCCEEEEEEe--------------------------------------cCCeEEE
Q psy9598 716 ---------DETNKKIKVTMVAWDASDRWVITAIN--------------------------------------FNFQIKI 748 (1915)
Q Consensus 716 ---------~~~~~~~~V~~va~spdg~~L~t~s~--------------------------------------~Dg~I~v 748 (1915)
........-...+++|...++++... .-|.|.-
T Consensus 378 ~~~~~~~i~pg~~Gg~nw~~~a~dp~~~l~yvp~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~g~~~~~~~~G~l~A 457 (596)
T d1w6sa_ 378 MDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKA 457 (596)
T ss_dssp TTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEE
T ss_pred CCccceeEecccccccccCccccCCCCceEEecccccccccccccccccccccccccccccccCcccCcccCCCcceEEE
Confidence 00000000122355555555444321 0146888
Q ss_pred EECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCC-
Q psy9598 749 WDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGT- 827 (1915)
Q Consensus 749 wD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~- 827 (1915)
||+.+|+.+-..... .++.+-.++. .+.++++|+.||.++.+|..+|+. +-.+. +.....+.. +.|..||+
T Consensus 458 ~D~~TG~~~W~~~~~-~~~~gg~lsT-agglVF~G~~Dg~l~A~Da~TGe~--LW~~~--~~~~~~a~P--~tY~~dGkQ 529 (596)
T d1w6sa_ 458 YNAITGDYKWEKMER-FAVWGGTMAT-AGDLVFYGTLDGYLKARDSDTGDL--LWKFK--IPSGAIGYP--MTYTHKGTQ 529 (596)
T ss_dssp ECTTTCCEEEEEEES-SCCCSBCEEE-TTTEEEEECTTSEEEEEETTTCCE--EEEEE--CSSCCCSCC--EEEEETTEE
T ss_pred EeCCCCceecccCCC-CCCccceeEe-cCCEEEEECCCCeEEEEECCCCcE--eeEEE--CCCCcccCC--eEEEECCEE
Confidence 888888877655321 1111111222 567888899999999999999999 66665 222222222 34555775
Q ss_pred EEEEE
Q psy9598 828 TCALT 832 (1915)
Q Consensus 828 ~Lasg 832 (1915)
+||+.
T Consensus 530 Yvav~ 534 (596)
T d1w6sa_ 530 YVAIY 534 (596)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 45544
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.32 E-value=0.045 Score=68.26 Aligned_cols=81 Identities=19% Similarity=0.229 Sum_probs=53.3
Q ss_pred CeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEc
Q psy9598 744 FQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWS 823 (1915)
Q Consensus 744 g~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafS 823 (1915)
|.|.-+|+.+|+.+-.+..+.. +.+-..+. .+.++++|+.||.++.+|..+|+. +-.+. +.....+.. +.|.
T Consensus 466 G~l~AiD~~TG~i~W~~~~~~p-~~~g~lst-agglVF~Gt~dg~l~A~Da~TGe~--LW~~~--~~~~~~~~P--~ty~ 537 (582)
T d1flga_ 466 GSLRAMDPVSGKVVWEHKEHLP-LWAGVLAT-AGNLVFTGTGDGYFKAFDAKSGKE--LWKFQ--TGSGIVSPP--ITWE 537 (582)
T ss_dssp EEEEEECTTTCCEEEEEEESSC-CCSCCEEE-TTTEEEEECTTSEEEEEETTTCCE--EEEEE--CSSCCCSCC--EEEE
T ss_pred CeEEEEcCCCCcEEeecCCCCC-CccceeEE-cCCeEEEeCCCCeEEEEECCCCcE--eEEEE--CCCCccccC--EEEE
Confidence 5688889999988887764432 22111223 567888899999999999999999 66665 222222222 4566
Q ss_pred CCCC-EEEEE
Q psy9598 824 PDGT-TCALT 832 (1915)
Q Consensus 824 pdg~-~Lasg 832 (1915)
.+|+ +||+.
T Consensus 538 ~~G~qYv~i~ 547 (582)
T d1flga_ 538 QDGEQYLGVT 547 (582)
T ss_dssp ETTEEEEEEE
T ss_pred ECCEEEEEEE
Confidence 7885 55544
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.30 E-value=0.033 Score=69.33 Aligned_cols=331 Identities=11% Similarity=0.016 Sum_probs=166.5
Q ss_pred CCEEEEEE-CCCcEEEEEC-CCCcEEEEEeCCCC----CE-------EEEEEeCCCCEEEEEeCCCcEEEEECCCCceEE
Q psy9598 488 GEVIVTGA-DDLLIKLWRA-RDGKLLATLRGCSG----EI-------SDIAIDNRNILLAAGTVDKTIRIWNLQTLAPIS 554 (1915)
Q Consensus 488 g~~LaTGs-~Dg~I~IWd~-~tg~~~~~l~gH~~----~I-------~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~ 554 (1915)
+..|+.++ .++.|...|. .||+.+.++..... .+ ..+++. +..|+.++.|+.|.-.|..+|+.+.
T Consensus 62 ~g~vyv~t~~~~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~~~~rg~a~~--~~~i~~~~~~g~l~alda~tG~~~w 139 (571)
T d2ad6a1 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYG--AGQIVKKQANGHLLALDAKTGKINW 139 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEE--TTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCEEEEecCCCCeEEEEeCCCCCceEEEecCCCCcccccccccCcCCCcceee--CCeEEEEeCCCcEEeeehhhhhhhc
Confidence 33455555 4688999997 47999988742110 00 123443 3467788899999999999999877
Q ss_pred EeecCCC-CeEEEEeccCccCCCcEEEEEe------CCCeEEEEecccCccccceeccCcccc-----------------
Q psy9598 555 VLVGHQG-IITGVNFCPLEVNGFNYLASTS------TDGCIGFWKYKLDIDISKTVFHEPVMF----------------- 610 (1915)
Q Consensus 555 ~l~~h~~-~V~sl~fsp~~~~d~~~L~sgs------~DgtI~iWDl~~~~~~~~~~~~~~~~~----------------- 610 (1915)
....... .-..+.-.|.- -+ ..++.++ ..|.|.-+|+.++..+...........
T Consensus 140 ~~~~~~~~~~~~~t~~p~v-~~-~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~ 217 (571)
T d2ad6a1 140 EVEVCDPKVGSTLTQAPFV-AK-DTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQF 217 (571)
T ss_dssp EEECCCGGGTCBCCSCCEE-ET-TEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCS
T ss_pred cccccccccccceeecCeE-eC-CeEEEeeccccccccCcEEEEECCCCcEEEEEeccCCcccccccccccccccccCcc
Confidence 6542110 00111111111 02 3444444 367899999999987665432210000
Q ss_pred --------ccccCCCCCce-EEEEECCCCcEEEEEeCC----------------CeEEEEEecCCCCCceeEEeccCCC-
Q psy9598 611 --------NERIRPGNAHI-LCSSFSPGGLFLATGSGD----------------HHVRVYKMDGVDSPLGILEVEEHSD- 664 (1915)
Q Consensus 611 --------~~~~~~~~~~V-~~l~fspdg~~Lasgs~D----------------g~I~IwDl~~~~~~~~i~~l~~h~~- 664 (1915)
........+.+ ...++.+....++.+..+ ..|...|+. +...+..++.+..
T Consensus 218 ~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~svvAld~~---TG~~~W~~q~~~~D 294 (571)
T d2ad6a1 218 GLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLD---TGMAKWGYQKTPHD 294 (571)
T ss_dssp SHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETT---TCCEEEEEESSTTC
T ss_pred cccccccCCcccccCCCccccccccchhcCeeeeecccccCccccccccccccccceeeeecc---chhheecccccCcc
Confidence 00000001111 234555555555554432 234444542 2222322222111
Q ss_pred --------CeeEEEEcCCCC---EEEEEeCCCcEEEEEccCCceEEeeecccccC--------CCCcc------------
Q psy9598 665 --------KVDSIQWSHSHL---RFVSGSRDGTALIWYYKCSQWRFIRLDMNTCL--------PHTKE------------ 713 (1915)
Q Consensus 665 --------~V~sl~fspdg~---~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~--------~~~~~------------ 713 (1915)
....+.+..++. .++.++.+|.+.++|..+++.+.......... .....
T Consensus 295 ~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 374 (571)
T d2ad6a1 295 EWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHK 374 (571)
T ss_dssp SSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCC
T ss_pred ccccccccccceeeeeccCccccceeeccccceEEEEecCCCcEeeeeccCCcccccccccccccccccCcccccccccC
Confidence 111112223443 46788899999999999998654211100000 00000
Q ss_pred -cccccc--ccccEEEEEECCCCCEEEEEEec------------------------------------CCeEEEEECCCC
Q psy9598 714 -TSDETN--KKIKVTMVAWDASDRWVITAINF------------------------------------NFQIKIWDAFNG 754 (1915)
Q Consensus 714 -~~~~~~--~~~~V~~va~spdg~~L~t~s~~------------------------------------Dg~I~vwD~~tg 754 (1915)
...... ....-...+++|....+++.... .|.|.-+|+.+|
T Consensus 375 g~~~~p~~~Gg~~w~~~a~dP~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~AiD~~TG 454 (571)
T d2ad6a1 375 GTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTG 454 (571)
T ss_dssp EEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTC
T ss_pred ceEEEeccccccccccceECCCCceEEEeccccccccccccccccCCccccccceeeccccCCcccCCcccEEEeccCCC
Confidence 000000 00011235677777666654430 145777888888
Q ss_pred ceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCC-EEEEEe
Q psy9598 755 DLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGT-TCALTD 833 (1915)
Q Consensus 755 ~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~-~Lasg~ 833 (1915)
+.+-....-.. ..+-.... .+.++++|+.||.++.+|..+|+. +-.+. +.....+ .-+.|..||+ +|++..
T Consensus 455 ~~~W~~~~~~~-~~~g~l~T-agglVf~G~~dg~l~A~Da~tGe~--lW~~~--l~~~~~a--~P~ty~~dGkqYi~v~~ 526 (571)
T d2ad6a1 455 KAKWTKWEKFA-AWGGTLYT-KGGLVWYATLDGYLKALDNKDGKE--LWNFK--MPSGGIG--SPMTYSFKGKQYIGSMY 526 (571)
T ss_dssp CEEEEEEESSC-CCSBCEEE-TTTEEEEECTTSEEEEEETTTCCE--EEEEE--CSSCCCS--CCEEEEETTEEEEEEEE
T ss_pred ceeeEcCCCCC-CCcceeEe-cCCEEEEECCCCeEEEEECCCCcE--EEEEE--CCCCcee--cceEEEECCEEEEEEEe
Confidence 87766542111 11101111 457888899999999999999998 65554 2222111 1244555775 454444
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=97.10 E-value=0.031 Score=65.45 Aligned_cols=164 Identities=10% Similarity=0.044 Sum_probs=92.8
Q ss_pred CEEEEEEeCCCCEEEEEeCCC-----------cEEEEECCCCceE--EEe-ecCCCCeEEEEeccCccCCCcEEEEEeCC
Q psy9598 520 EISDIAIDNRNILLAAGTVDK-----------TIRIWNLQTLAPI--SVL-VGHQGIITGVNFCPLEVNGFNYLASTSTD 585 (1915)
Q Consensus 520 ~I~~Lafspdg~~LaSgs~Dg-----------tIrVWDl~tg~~~--~~l-~~h~~~V~sl~fsp~~~~d~~~L~sgs~D 585 (1915)
.+...+...+|++++.|+.+. .+.+||+.++.-. ..+ ..|.....+.++.+ ++.+++.|+.+
T Consensus 21 ~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~----~g~i~v~Gg~~ 96 (387)
T d1k3ia3 21 PAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDG----NGQIVVTGGND 96 (387)
T ss_dssp CSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECT----TSCEEEECSSS
T ss_pred ccEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEec----CCcEEEeecCC
Confidence 344444556788888877431 3779999876532 222 23333344556666 45788888755
Q ss_pred -CeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCC------CeEEEEEecCCCCCceeEE
Q psy9598 586 -GCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGD------HHVRVYKMDGVDSPLGILE 658 (1915)
Q Consensus 586 -gtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~D------g~I~IwDl~~~~~~~~i~~ 658 (1915)
..+.+||..+.......... ....-.+++..++|.+++.|+.+ ..+.+||..... ...+..
T Consensus 97 ~~~~~~yd~~~~~w~~~~~~~-----------~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~-W~~~~~ 164 (387)
T d1k3ia3 97 AKKTSLYDSSSDSWIPGPDMQ-----------VARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT-WTSLPN 164 (387)
T ss_dssp TTCEEEEEGGGTEEEECCCCS-----------SCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE-EEEETT
T ss_pred CcceeEecCccCccccccccc-----------ccccccceeeecCCceeeeccccccccccceeeeecCCCCc-eeecCC
Confidence 58999998876432111110 01122456778899998888753 358889874321 110000
Q ss_pred -------eccCC-----CCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEE
Q psy9598 659 -------VEEHS-----DKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRF 699 (1915)
Q Consensus 659 -------l~~h~-----~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~ 699 (1915)
...+. ..-..+...++|..++.++..+.+.+++..+..|..
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~ 217 (387)
T d1k3ia3 165 AKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKS 217 (387)
T ss_dssp SCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEE
T ss_pred CcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCcEee
Confidence 00000 011112234567778888777878888777776654
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=97.00 E-value=0.04 Score=64.41 Aligned_cols=280 Identities=11% Similarity=0.004 Sum_probs=140.1
Q ss_pred CCcEEEEEeCC-----C------eEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCC-CeE
Q psy9598 575 GFNYLASTSTD-----G------CIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGD-HHV 642 (1915)
Q Consensus 575 d~~~L~sgs~D-----g------tI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~D-g~I 642 (1915)
++++++.|+.+ + .+.+||..++.......... ++.......++.++|.+++.|+.+ ..+
T Consensus 30 ~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~---------~~~~~~~~~~~~~~g~i~v~Gg~~~~~~ 100 (387)
T d1k3ia3 30 SGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVT---------KHDMFCPGISMDGNGQIVVTGGNDAKKT 100 (387)
T ss_dssp TTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEEC---------SCCCSSCEEEECTTSCEEEECSSSTTCE
T ss_pred CCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCC---------CcccceeEEEEecCCcEEEeecCCCcce
Confidence 44666666632 1 36789998875432222111 111223456788999998888765 589
Q ss_pred EEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCC------CcEEEEEccCCceEEeeecccccCCCCccccc
Q psy9598 643 RVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRD------GTALIWYYKCSQWRFIRLDMNTCLPHTKETSD 716 (1915)
Q Consensus 643 ~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~D------G~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~ 716 (1915)
.+||.... .......+.. ...-.+++..++|.+++.|+.+ ..+.+||..+..|............. .....
T Consensus 101 ~~yd~~~~-~w~~~~~~~~-~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~-~~~~~ 177 (387)
T d1k3ia3 101 SLYDSSSD-SWIPGPDMQV-ARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLT-ADKQG 177 (387)
T ss_dssp EEEEGGGT-EEEECCCCSS-CCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCC-CCTTG
T ss_pred eEecCccC-cccccccccc-cccccceeeecCCceeeeccccccccccceeeeecCCCCceeecCCCccccccc-ccccc
Confidence 99998432 1111111111 1223456677899998888753 35899999999987542111100000 00000
Q ss_pred cccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEee--C----CCC--CeEEEEEccCCCCEEEEEecCc-
Q psy9598 717 ETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLK--G----HTN--EVFVLESHPFDSRVLLSAGHDG- 787 (1915)
Q Consensus 717 ~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~--g----H~~--~V~sl~~sp~dg~~LaSgs~DG- 787 (1915)
.... .....+...++|..++.++. .+.+.+++..+........ . +.. .-.++.+...++++++.||...
T Consensus 178 ~~~~-~~~~~~~~~~~G~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~ 255 (387)
T d1k3ia3 178 LYRS-DNHAWLFGWKKGSVFQAGPS-TAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDY 255 (387)
T ss_dssp GGTT-TCSCCEEECGGGCEEECCSS-SEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSS
T ss_pred eeec-cceeEEEEeCCCCEEEecCc-CCcEEecCcccCcEeeccccccCcccCcccccccEEEeeccCCceEEEEeccCC
Confidence 0000 11111233456776666665 6777777776654332211 0 111 1123333333567777776421
Q ss_pred -------eEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEEeCCC-----------eEEEEeCCCCc--
Q psy9598 788 -------LIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYG-----------HLLVYGLGGFK-- 847 (1915)
Q Consensus 788 -------~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~dG-----------~I~Iwdl~s~~-- 847 (1915)
...+.++...... .......-.......-.+....+||+++++|+.++ .+.+||..+.+
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~r~~~~~~~~~dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~W~ 334 (387)
T d1k3ia3 256 QDSDATTNAHIITLGEPGTS-PNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFY 334 (387)
T ss_dssp SSSBCCCCEEEEECCSTTSC-CEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEE
T ss_pred CCCcccceeecccccccccC-CCceeeccccccccccceeeeccCCeEEEECCcccCccCCCCcEeceEEEEECCCCeEE
Confidence 2334443322220 00111000001111233456678999999987431 46789887654
Q ss_pred ccccCCC----c--eeecCCCCeeeecC
Q psy9598 848 RPQNIPR----E--LFFHTDYRTLNRPN 869 (1915)
Q Consensus 848 ~~~~l~~----~--~~F~~d~~~Lv~~~ 869 (1915)
.+..++. + ....+|++.++...
T Consensus 335 ~~~~~~~~R~~Hs~a~l~~dG~v~v~GG 362 (387)
T d1k3ia3 335 KQNPNSIVRVYHSISLLLPDGRVFNGGG 362 (387)
T ss_dssp ECCCCSSCCCTTEEEEECTTSCEEEEEC
T ss_pred ECCCCCCcccceEEEEECCCCEEEEEeC
Confidence 2222332 1 22456888887543
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.97 E-value=0.21 Score=55.13 Aligned_cols=249 Identities=10% Similarity=-0.045 Sum_probs=146.1
Q ss_pred EEEEEECCCcEEEEECCCCc-----EEEEEeCCCCCEEEEEEeCCCCEEEEE-eCCCcEEEEECCCCceEEEeecCCCCe
Q psy9598 490 VIVTGADDLLIKLWRARDGK-----LLATLRGCSGEISDIAIDNRNILLAAG-TVDKTIRIWNLQTLAPISVLVGHQGII 563 (1915)
Q Consensus 490 ~LaTGs~Dg~I~IWd~~tg~-----~~~~l~gH~~~I~~Lafspdg~~LaSg-s~DgtIrVWDl~tg~~~~~l~~h~~~V 563 (1915)
+|+-+.. +.|+-.++.... ....+..+...|..|+|...++.|+-+ ..++.|...++..+.....+......+
T Consensus 3 fLl~s~~-~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p 81 (263)
T d1npea_ 3 HLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSP 81 (263)
T ss_dssp EEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCE
T ss_pred EEEEeCC-CeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccc
Confidence 4444332 366666654332 122233344568889999877766655 456789988988766655555545678
Q ss_pred EEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCC-CeE
Q psy9598 564 TGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGD-HHV 642 (1915)
Q Consensus 564 ~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~D-g~I 642 (1915)
.+|++.... +.+.++-...+.|.+.++....... ... .....+..+++.|...+|+..... +..
T Consensus 82 ~~iAvD~~~---~~lY~~d~~~~~I~~~~~dg~~~~~--l~~----------~~l~~p~~l~vdp~~g~ly~t~~~~~~~ 146 (263)
T d1npea_ 82 EGIALDHLG---RTIFWTDSQLDRIEVAKMDGTQRRV--LFD----------TGLVNPRGIVTDPVRGNLYWTDWNRDNP 146 (263)
T ss_dssp EEEEEETTT---TEEEEEETTTTEEEEEETTSCSCEE--EEC----------SSCSSEEEEEEETTTTEEEEEECCSSSC
T ss_pred cEEEEeccC---CeEEEeccCCCEEEEEecCCceEEE--Eec----------ccccCCcEEEEecccCcEEEeecCCCCc
Confidence 889887532 3444555667899999887653211 111 112457889999877666644322 333
Q ss_pred EEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEE-eCCCcEEEEEccCCceEEeeecccccCCCCcccccccccc
Q psy9598 643 RVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSG-SRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKK 721 (1915)
Q Consensus 643 ~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sg-s~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 721 (1915)
+||.+.......... ....-....+|++.+.+..|+.+ ...+.|...++.......+.. +.
T Consensus 147 ~I~r~~~dG~~~~~i-~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~----------------~~- 208 (263)
T d1npea_ 147 KIETSHMDGTNRRIL-AQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLE----------------GL- 208 (263)
T ss_dssp EEEEEETTSCCCEEE-ECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEE----------------CC-
T ss_pred EEEEecCCCCCceee-eeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEEC----------------CC-
Confidence 455432222222221 22233456899998887777555 566788888876544322211 01
Q ss_pred ccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCC-CCCeEEEEEcc
Q psy9598 722 IKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGH-TNEVFVLESHP 774 (1915)
Q Consensus 722 ~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH-~~~V~sl~~sp 774 (1915)
.....|++. +.+|+.+....+.|...|..+++.+..+..+ ......|++.+
T Consensus 209 ~~P~~lav~--~~~lYwtd~~~~~I~~~~~~~g~~~~~~~~~~~~~~~gi~v~~ 260 (263)
T d1npea_ 209 QYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIAL 260 (263)
T ss_dssp CSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEEC
T ss_pred CCcEEEEEE--CCEEEEEECCCCEEEEEECCCCccceEECCCCCCCcceEEEeC
Confidence 112356664 5677777655789999999999887766433 33444555544
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.89 E-value=0.44 Score=52.32 Aligned_cols=263 Identities=12% Similarity=0.130 Sum_probs=156.0
Q ss_pred CcEEEEECCCCcE-EEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCC
Q psy9598 498 LLIKLWRARDGKL-LATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGF 576 (1915)
Q Consensus 498 g~I~IWd~~tg~~-~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~ 576 (1915)
..|.|.|+..... .+.--.-. +.-.+|....||.-+ ..++.|+|+++.+.+..+.-.. .|.--.|...
T Consensus 45 ~~VvIidl~n~~~~~Rrpi~Ad----sAIMhP~~~IiALra-g~~LQiFnletK~klks~~~~e-~VvfWkWis~----- 113 (327)
T d1utca2 45 AQVVIIDMNDPSNPIRRPISAD----SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISL----- 113 (327)
T ss_dssp EEEEEEETTSTTSCEEEECCCS----EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSS-CCCEEEESSS-----
T ss_pred ceEEEEECCCCCcceecccchh----hhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEcCC-CcEEEEecCC-----
Confidence 4788889876542 22221122 233467777777666 5689999999998888876544 5555566542
Q ss_pred cEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEe-------CCCeEEEEEecC
Q psy9598 577 NYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGS-------GDHHVRVYKMDG 649 (1915)
Q Consensus 577 ~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs-------~Dg~I~IwDl~~ 649 (1915)
+.|+..+. ..|.-|++..... ....+..... + ...+|..-..++++++++..| -.|.+.+|.+..
T Consensus 114 ~~L~lVT~-taVYHW~~~g~s~-P~k~fdR~~~----L--~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er 185 (327)
T d1utca2 114 NTVALVTD-NAVYHWSMEGESQ-PVKMFDRHSS----L--AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR 185 (327)
T ss_dssp SEEEEECS-SEEEEEESSSSCC-CEEEEECCGG----G--TTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTT
T ss_pred CEEEEEcC-CceEEEcccCCCC-chhhhhhccc----c--cCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEecc
Confidence 56666654 4699999965432 2222221111 1 247788888899999876543 246788998732
Q ss_pred CCCCceeEEeccCCCCeeEEEEcCCC---CEEEEE---eCCCcEEEEEccCCceEEeeecccccCCCCc--ccccccccc
Q psy9598 650 VDSPLGILEVEEHSDKVDSIQWSHSH---LRFVSG---SRDGTALIWYYKCSQWRFIRLDMNTCLPHTK--ETSDETNKK 721 (1915)
Q Consensus 650 ~~~~~~i~~l~~h~~~V~sl~fspdg---~~L~sg---s~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 721 (1915)
..-..+.||.+....+.+..+. ..|+.+ ...+.++|-++.....- ........ .........
T Consensus 186 ----~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g------~~~f~kk~vdi~fppea~~ 255 (327)
T d1utca2 186 ----KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTG------NQPFPKKAVDVFFPPEAQN 255 (327)
T ss_dssp ----TEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTT------CCCCCCEEEECCCCTTCTT
T ss_pred ----CcCccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccC------CCCCcceeEEEECCccccC
Confidence 3344567776555444433221 122222 22356777776543200 00000000 000011122
Q ss_pred ccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEE
Q psy9598 722 IKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIII 791 (1915)
Q Consensus 722 ~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~I 791 (1915)
.--.++..+.....++.-+. -|.|++||+.++.++..-+-....|+..+-+. ...=+++...+|.|..
T Consensus 256 DFPvamqvs~kygiiyviTK-~G~i~lyDleTgt~i~~nRIs~~~iF~~a~~~-~~~Gi~~VNr~GqVl~ 323 (327)
T d1utca2 256 DFPVAMQISEKHDVVFLITK-YGYIHLYDLETGTCIYMNRISGETIFVTAPHE-ATAGIIGVNRKGQVLS 323 (327)
T ss_dssp CCEEEEEEETTTTEEEEEET-TSEEEEEETTTCCEEEEEECCSSCEEEEEEET-TTTEEEEEETTSEEEE
T ss_pred CcEEEEEeeccCCEEEEEec-CcEEEEEEcccccEEEEeecCCCceEEeccCC-CCceEEEECCCCeEEE
Confidence 33456777777777777776 89999999999999998887777787666655 4444555667776653
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.74 E-value=0.23 Score=54.86 Aligned_cols=208 Identities=10% Similarity=-0.045 Sum_probs=127.2
Q ss_pred ecCCCCcEEEEEEcCCCCEEEEEE-CCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEE-EEeCCCcEEEEECCC
Q psy9598 472 NLGHLSAVFCVLFDKLGEVIVTGA-DDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLA-AGTVDKTIRIWNLQT 549 (1915)
Q Consensus 472 l~gH~~~V~~vafspdg~~LaTGs-~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~La-Sgs~DgtIrVWDl~t 549 (1915)
+..+...|.+|+|+..++.|+-.. .++.|...++..+.....+......+.+|++..-+..|+ +-...+.|.+.++..
T Consensus 31 ~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg 110 (263)
T d1npea_ 31 LHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDG 110 (263)
T ss_dssp EEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred cccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCC
Confidence 334455688899998777777654 457898888876655555544446789999987666565 445577999999986
Q ss_pred CceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEE--ecccCccccceeccCccccccccCCCCCceEEEEEC
Q psy9598 550 LAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFW--KYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFS 627 (1915)
Q Consensus 550 g~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iW--Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs 627 (1915)
......+......+..|++.|.. +.++.+-...+..+|| ++..... ..... ..-.....+++.
T Consensus 111 ~~~~~l~~~~l~~p~~l~vdp~~---g~ly~t~~~~~~~~I~r~~~dG~~~--~~i~~----------~~~~~P~glaiD 175 (263)
T d1npea_ 111 TQRRVLFDTGLVNPRGIVTDPVR---GNLYWTDWNRDNPKIETSHMDGTNR--RILAQ----------DNLGLPNGLTFD 175 (263)
T ss_dssp CSCEEEECSSCSSEEEEEEETTT---TEEEEEECCSSSCEEEEEETTSCCC--EEEEC----------TTCSCEEEEEEE
T ss_pred ceEEEEecccccCCcEEEEeccc---CcEEEeecCCCCcEEEEecCCCCCc--eeeee----------ecccccceEEEe
Confidence 65544444445678899998843 3344343322333444 3433211 11111 122456789998
Q ss_pred CCCcEEEEE-eCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEE
Q psy9598 628 PGGLFLATG-SGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRF 699 (1915)
Q Consensus 628 pdg~~Lasg-s~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~ 699 (1915)
+.+..|..+ ...+.|...++++.. ....+.+.. ...+|++. .+.++++-...+.|...|..+++...
T Consensus 176 ~~~~~lYw~d~~~~~I~~~~~~g~~---~~~v~~~~~-~P~~lav~-~~~lYwtd~~~~~I~~~~~~~g~~~~ 243 (263)
T d1npea_ 176 AFSSQLCWVDAGTHRAECLNPAQPG---RRKVLEGLQ-YPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMD 243 (263)
T ss_dssp TTTTEEEEEETTTTEEEEEETTEEE---EEEEEECCC-SEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEE
T ss_pred ecCcEEEEEeCCCCEEEEEECCCCC---eEEEECCCC-CcEEEEEE-CCEEEEEECCCCEEEEEECCCCccce
Confidence 877766554 456788888884322 111223322 34577775 34445555567888888887776443
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.73 E-value=0.62 Score=51.20 Aligned_cols=232 Identities=12% Similarity=-0.021 Sum_probs=135.1
Q ss_pred cEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEe-CCCcEEEEECCCCc----eEEEeecCCCCeEEEEeccCcc
Q psy9598 499 LIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGT-VDKTIRIWNLQTLA----PISVLVGHQGIITGVNFCPLEV 573 (1915)
Q Consensus 499 ~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs-~DgtIrVWDl~tg~----~~~~l~~h~~~V~sl~fsp~~~ 573 (1915)
.|+..++.+......+. ....+.+|+|++.+..|+-.. ..+.|...++.... ....+......+.+|++.+.+
T Consensus 11 ~I~~~~l~~~~~~~~~~-~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~- 88 (266)
T d1ijqa1 11 EVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH- 88 (266)
T ss_dssp SEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTT-
T ss_pred eEEEEECCCCcceeeeC-CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeecc-
Confidence 58888887665444444 455678999998877666554 45667766665321 222333334556778886633
Q ss_pred CCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEe--CCCeEEEEEecCCC
Q psy9598 574 NGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGS--GDHHVRVYKMDGVD 651 (1915)
Q Consensus 574 ~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs--~Dg~I~IwDl~~~~ 651 (1915)
+++.++-...+.|.+.++......... .........++++|...+|.... ..+.|.-.++++..
T Consensus 89 --~~lY~~d~~~~~I~v~~~~g~~~~~~~------------~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~ 154 (266)
T d1ijqa1 89 --SNIYWTDSVLGTVSVADTKGVKRKTLF------------RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD 154 (266)
T ss_dssp --TEEEEEETTTTEEEEEETTSSSEEEEE------------ECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC
T ss_pred --ceEEEEecCCCEEEeEecCCceEEEEE------------cCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCc
Confidence 355556667788999998765321111 11224578899988655555443 33456556654322
Q ss_pred CCceeEEeccCCCCeeEEEEcCCCCEEEEE-eCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEEC
Q psy9598 652 SPLGILEVEEHSDKVDSIQWSHSHLRFVSG-SRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWD 730 (1915)
Q Consensus 652 ~~~~i~~l~~h~~~V~sl~fspdg~~L~sg-s~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~s 730 (1915)
. .......-....+|++.+.+..|+.+ +..+.|...++.......+... .........|++.
T Consensus 155 --~-~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~--------------~~~~~~p~~lav~ 217 (266)
T d1ijqa1 155 --I-YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILED--------------EKRLAHPFSLAVF 217 (266)
T ss_dssp --E-EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEEC--------------TTTTSSEEEEEEE
T ss_pred --e-ecccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeC--------------CCcccccEEEEEE
Confidence 1 11122334567899999877766655 5567888888765543221110 0111223456655
Q ss_pred CCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCC
Q psy9598 731 ASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTN 765 (1915)
Q Consensus 731 pdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~ 765 (1915)
+.+|+.+...++.|...+..++.....+.....
T Consensus 218 --~~~ly~td~~~~~I~~~~~~~g~~~~~~~~~~~ 250 (266)
T d1ijqa1 218 --EDKVFWTDIINEAIFSANRLTGSDVNLLAENLL 250 (266)
T ss_dssp --TTEEEEEETTTTEEEEEETTTCCCCEEEECSCS
T ss_pred --CCEEEEEECCCCeEEEEECCCCcceEEEEcCCC
Confidence 456666665578888888888776666654443
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.66 E-value=0.22 Score=59.23 Aligned_cols=255 Identities=14% Similarity=0.017 Sum_probs=129.8
Q ss_pred CCCCcEEEEEEcCCCCEEEEEEC-C----CcEEEEECCCCcEEE-EEeCCCCCEEEEEEeCCCCEEEEEeCC--------
Q psy9598 474 GHLSAVFCVLFDKLGEVIVTGAD-D----LLIKLWRARDGKLLA-TLRGCSGEISDIAIDNRNILLAAGTVD-------- 539 (1915)
Q Consensus 474 gH~~~V~~vafspdg~~LaTGs~-D----g~I~IWd~~tg~~~~-~l~gH~~~I~~Lafspdg~~LaSgs~D-------- 539 (1915)
++.-.+..+++||+|++||.+-+ + ..|+++|+.+|+.+. .+.. .....++|++|+..|+-...+
T Consensus 122 ~~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~--~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~ 199 (430)
T d1qfma1 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER--VKFSCMAWTHDGKGMFYNAYPQQDGKSDG 199 (430)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE--ECSCCEEECTTSSEEEEEECCCCSSCCSS
T ss_pred cccceecceEecCCCCEEEEEeccccCchheeEEeccCcceeccccccc--ccccceEEcCCCCEEEEEEeccccCcccc
Confidence 34444556678999999985432 2 379999999998764 3321 122568999999987755432
Q ss_pred --------CcEEEEECCCCce--EEEeecCC--CCeEEEEeccCccCCCcEEEEEe---CCCeEEEE--ecccCccccce
Q psy9598 540 --------KTIRIWNLQTLAP--ISVLVGHQ--GIITGVNFCPLEVNGFNYLASTS---TDGCIGFW--KYKLDIDISKT 602 (1915)
Q Consensus 540 --------gtIrVWDl~tg~~--~~~l~~h~--~~V~sl~fsp~~~~d~~~L~sgs---~DgtI~iW--Dl~~~~~~~~~ 602 (1915)
..|.+|.+.+... +..+.... ..+..+..+. ++.+|+... .++...+| ++.........
T Consensus 200 ~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~----d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~ 275 (430)
T d1qfma1 200 TETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSD----DGRYVLLSIREGCDPVNRLWYCDLQQESNGITG 275 (430)
T ss_dssp SCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECT----TSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCS
T ss_pred cccccCCcceEEEEECCCCccccccccccccCCceEEeeeccC----CcceeeEEeeccCCccEEEEEeeCCCccccccc
Confidence 2588888877543 33343333 3355566665 346655432 23344444 43332111000
Q ss_pred eccCccccccccCCCCCceEEEEECCCCcEEEEEe---CCCeEEEEEecCCCCCceeEE-eccCCCCeeEEEEcCCCCEE
Q psy9598 603 VFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGS---GDHHVRVYKMDGVDSPLGILE-VEEHSDKVDSIQWSHSHLRF 678 (1915)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs---~Dg~I~IwDl~~~~~~~~i~~-l~~h~~~V~sl~fspdg~~L 678 (1915)
... .... .......+. ...+.++.+++... .++.|...++.... ...... +..+...+..-.++..+.+|
T Consensus 276 ~~~-~~~~---~~~~~~~~~-~~~~~~~~~~~~Tn~~a~~~~L~~~~~~~~~-~~~w~~vi~~~~~~~~~~~~~~~~~~l 349 (430)
T d1qfma1 276 ILK-WVKL---IDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPE-ESKWKVLVPEHEKDVLEWVACVRSNFL 349 (430)
T ss_dssp SCC-CEEE---ECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTBCC-GGGCEEEECCCSSCEEEEEEEETTTEE
T ss_pred ccc-eeEe---ecccccceE-EEecCCceeecccCcccccceeEEecCCCCc-cccceEEecccCcceeeeEEEEECCEE
Confidence 000 0000 011111222 22223333444332 24566666664322 122222 33445555544444445566
Q ss_pred EEEe-CCC--cEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEe---cCCeEEEEECC
Q psy9598 679 VSGS-RDG--TALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAIN---FNFQIKIWDAF 752 (1915)
Q Consensus 679 ~sgs-~DG--~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~---~Dg~I~vwD~~ 752 (1915)
+... .+| .|+++++.++.+..+... ..+.|..+....+...+....+ .-.+++.+|+.
T Consensus 350 vl~~~~~~~~~l~v~~~~~~~~~~~~~~----------------~~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~ 413 (430)
T d1qfma1 350 VLCYLHDVKNTLQLHDLATGALLKIFPL----------------EVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLT 413 (430)
T ss_dssp EEEEEETTEEEEEEEETTTCCEEEEECC----------------CSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETT
T ss_pred EEEEEcCCEeEEEEEECCCCcEEEecCC----------------CCceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECC
Confidence 5544 554 478888888775543211 1234444555555555544433 13578889988
Q ss_pred CCce
Q psy9598 753 NGDL 756 (1915)
Q Consensus 753 tg~~ 756 (1915)
+++.
T Consensus 414 t~~~ 417 (430)
T d1qfma1 414 KEEL 417 (430)
T ss_dssp SSSC
T ss_pred CCCc
Confidence 8753
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=96.47 E-value=0.2 Score=62.11 Aligned_cols=65 Identities=9% Similarity=0.033 Sum_probs=44.3
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEeecCCC----------Ce-EEEEeccCccCCCcEEEEEeCCCeEEEEecccCcccc
Q psy9598 532 LLAAGTVDKTIRIWNLQTLAPISVLVGHQG----------II-TGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDIS 600 (1915)
Q Consensus 532 ~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~----------~V-~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~ 600 (1915)
.|+.++.++.|.-+|..+|+.+..+..... .+ ..+.+.. ..++.++.|+.+...|..++..+.
T Consensus 79 ~vyv~t~~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~~------~~v~~~t~~g~l~alda~tG~~~W 152 (573)
T d1kb0a2 79 IMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWK------GKVYVGAWDGRLIALDAATGKEVW 152 (573)
T ss_dssp EEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEET------TEEEEECTTSEEEEEETTTCCEEE
T ss_pred EEEEECCCCeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEEC------CcEEEEecccceeeecccccccee
Confidence 566677788899999999999887642210 11 1222322 467788889999888988887654
Q ss_pred ce
Q psy9598 601 KT 602 (1915)
Q Consensus 601 ~~ 602 (1915)
..
T Consensus 153 ~~ 154 (573)
T d1kb0a2 153 HQ 154 (573)
T ss_dssp EE
T ss_pred cc
Confidence 44
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=96.41 E-value=0.26 Score=60.89 Aligned_cols=69 Identities=9% Similarity=0.042 Sum_probs=42.2
Q ss_pred CCCEEEEEeCCCcEEEEEC-CCCceEEEeecCCC----Ce-------EEEEeccCccCCCcEEEEEeCCCeEEEEecccC
Q psy9598 529 RNILLAAGTVDKTIRIWNL-QTLAPISVLVGHQG----II-------TGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLD 596 (1915)
Q Consensus 529 dg~~LaSgs~DgtIrVWDl-~tg~~~~~l~~h~~----~V-------~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~ 596 (1915)
+|.++++.+.++.|...|. .+|+.+..+..... .+ ..+++.. ..|+.++.||.|.-.|..++
T Consensus 62 ~g~vyv~t~~~~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~~~~rg~a~~~------~~i~~~~~~g~l~alda~tG 135 (571)
T d2ad6a1 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGA------GQIVKKQANGHLLALDAKTG 135 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEET------TEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEecCCCCeEEEEeCCCCCceEEEecCCCCcccccccccCcCCCcceeeC------CeEEEEeCCCcEEeeehhhh
Confidence 3433333334677888887 46888877642110 00 1233332 57888899999999999999
Q ss_pred cccccee
Q psy9598 597 IDISKTV 603 (1915)
Q Consensus 597 ~~~~~~~ 603 (1915)
+.+....
T Consensus 136 ~~~w~~~ 142 (571)
T d2ad6a1 136 KINWEVE 142 (571)
T ss_dssp CEEEEEE
T ss_pred hhhcccc
Confidence 7655443
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.40 E-value=1 Score=53.03 Aligned_cols=253 Identities=9% Similarity=0.073 Sum_probs=127.6
Q ss_pred CEEEEEEeCCCCEEEEEe-CC----CcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCC---------
Q psy9598 520 EISDIAIDNRNILLAAGT-VD----KTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTD--------- 585 (1915)
Q Consensus 520 ~I~~Lafspdg~~LaSgs-~D----gtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~D--------- 585 (1915)
.+..+++||++++||.+- .+ .+|++.|+.+|+.+...... ....+++|++++ ..|+....+
T Consensus 126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~-~~~~~~~W~~D~----~~~~Y~~~~~~~~~~~~~ 200 (430)
T d1qfma1 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDG----KGMFYNAYPQQDGKSDGT 200 (430)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTS----SEEEEEECCCCSSCCSSS
T ss_pred eecceEecCCCCEEEEEeccccCchheeEEeccCcceeccccccc-ccccceEEcCCC----CEEEEEEeccccCccccc
Confidence 345567899999887542 23 37999999999876422111 122567898843 555543322
Q ss_pred -------CeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeC---CCeEEEE--EecCCCCC
Q psy9598 586 -------GCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSG---DHHVRVY--KMDGVDSP 653 (1915)
Q Consensus 586 -------gtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~---Dg~I~Iw--Dl~~~~~~ 653 (1915)
..|.+|.+.+........+.. ......+..+..+.++.+++.... ++...+| ++......
T Consensus 201 ~~~~~~~~~v~~h~lgt~~~~d~~v~~e--------~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~ 272 (430)
T d1qfma1 201 ETSTNLHQKLYYHVLGTDQSEDILCAEF--------PDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNG 272 (430)
T ss_dssp CCCCCCCCEEEEEETTSCGGGCEEEECC--------TTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSS
T ss_pred ccccCCcceEEEEECCCCcccccccccc--------ccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccc
Confidence 246666666554322222221 112235667888999998765432 3344455 43221110
Q ss_pred ----c-eeEEeccCCCCeeEEEEcCCCCEEEEEeC---CCcEEEEEccCCceEEeeecccccCCCCccccccccccccEE
Q psy9598 654 ----L-GILEVEEHSDKVDSIQWSHSHLRFVSGSR---DGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVT 725 (1915)
Q Consensus 654 ----~-~i~~l~~h~~~V~sl~fspdg~~L~sgs~---DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~ 725 (1915)
. ...........+.-+. +.++.+++.... ++.|...++...... ........+...+.
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~-------------~w~~vi~~~~~~~~ 338 (430)
T d1qfma1 273 ITGILKWVKLIDNFEGEYDYVT-NEGTVFTFKTNRHSPNYRLINIDFTDPEES-------------KWKVLVPEHEKDVL 338 (430)
T ss_dssp SCSSCCCEEEECSSSSCEEEEE-EETTEEEEEECTTCTTCEEEEEETTBCCGG-------------GCEEEECCCSSCEE
T ss_pred cccccceeEeecccccceEEEe-cCCceeecccCcccccceeEEecCCCCccc-------------cceEEecccCccee
Confidence 0 1111222222222222 222223332222 244444444332100 00000111223343
Q ss_pred EEEECCCCCEEEEEEecCC--eEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEEec---CceEEEEECCCCcc
Q psy9598 726 MVAWDASDRWVITAINFNF--QIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGH---DGLIIIWDILSSKQ 799 (1915)
Q Consensus 726 ~va~spdg~~L~t~s~~Dg--~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~---DG~I~IWdl~s~~~ 799 (1915)
...++..+.+|+.....++ .|+++++.++.....+....+.|..+...+.+..+.++.+. =.++..+|+.+++.
T Consensus 339 ~~~~~~~~~~lvl~~~~~~~~~l~v~~~~~~~~~~~~~~~~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~~ 417 (430)
T d1qfma1 339 EWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEEL 417 (430)
T ss_dssp EEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSSC
T ss_pred eeEEEEECCEEEEEEEcCCEeEEEEEECCCCcEEEecCCCCceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCCc
Confidence 3344444566666654354 58889998888766665555666666655533334444332 36889999988865
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=96.39 E-value=0.45 Score=58.89 Aligned_cols=75 Identities=11% Similarity=0.043 Sum_probs=45.3
Q ss_pred CCCEEEEEeCCCcEEEEEC-CCCceEEEeecCCC-----------CeEEEEeccCccCCCcEEEEEeCCCeEEEEecccC
Q psy9598 529 RNILLAAGTVDKTIRIWNL-QTLAPISVLVGHQG-----------IITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLD 596 (1915)
Q Consensus 529 dg~~LaSgs~DgtIrVWDl-~tg~~~~~l~~h~~-----------~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~ 596 (1915)
+|.++++++.++.|...|. .+|+.+..+..... .-..+++.+.......+|+.++.|+.|.-.|..++
T Consensus 62 ~g~ly~~t~~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~~~~~RGv~~~~~~~~~~~~v~~~t~dg~l~Alda~tG 141 (596)
T d1w6sa_ 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG 141 (596)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEeeCCCCcEEEEeCCCCCCEEEEecCCCCcccccccccccccceeEEecCCCCCceEEEEEeCCCCeEeeccccC
Confidence 3433444444566776776 47777776542110 11345555432223457889999999999999999
Q ss_pred cccccee
Q psy9598 597 IDISKTV 603 (1915)
Q Consensus 597 ~~~~~~~ 603 (1915)
+.+....
T Consensus 142 ~~~w~~~ 148 (596)
T d1w6sa_ 142 ETVWKVE 148 (596)
T ss_dssp CEEEEEE
T ss_pred ceecccc
Confidence 8765553
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.25 E-value=0.77 Score=50.41 Aligned_cols=227 Identities=12% Similarity=-0.059 Sum_probs=131.7
Q ss_pred CcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCC
Q psy9598 540 KTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNA 619 (1915)
Q Consensus 540 gtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (1915)
..|+-.++.+......+ .....+.+|.|.+.. +.+..+-...+.|.-.++.......... ........
T Consensus 10 ~~I~~~~l~~~~~~~~~-~~~~~~~~id~d~~~---~~lYw~D~~~~~I~~~~l~~~~~~~~~~--------~~~~~~~~ 77 (266)
T d1ijqa1 10 HEVRKMTLDRSEYTSLI-PNLRNVVALDTEVAS---NRIYWSDLSQRMICSTQLDRAHGVSSYD--------TVISRDIQ 77 (266)
T ss_dssp SSEEEEETTSCCCEEEE-CSCSSEEEEEEETTT---TEEEEEETTTTEEEEEEC--------CE--------EEECSSCS
T ss_pred CeEEEEECCCCcceeee-CCCCceEEEEEEeCC---CEEEEEECCCCEEEEEEecCCCCCcceE--------EEEeCCCC
Confidence 45888899876544444 455677889998743 2344444456667666654322111000 00111224
Q ss_pred ceEEEEECCCCcEEEE-EeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEe--CCCcEEEEEccCCc
Q psy9598 620 HILCSSFSPGGLFLAT-GSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGS--RDGTALIWYYKCSQ 696 (1915)
Q Consensus 620 ~V~~l~fspdg~~Las-gs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs--~DG~I~IWDl~~~~ 696 (1915)
.+.++++.+.+..|.. -...+.|.+.++++.. ....+........+|+++|...+|+... ..+.|.-.++....
T Consensus 78 ~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~---~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~ 154 (266)
T d1ijqa1 78 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK---RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD 154 (266)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTSSS---EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC
T ss_pred CcceEEEeeccceEEEEecCCCEEEeEecCCce---EEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCc
Confidence 4667888875554444 4566789999985432 2233344556688999988655554433 23345544554333
Q ss_pred eEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCC--CCCeEEEEEcc
Q psy9598 697 WRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGH--TNEVFVLESHP 774 (1915)
Q Consensus 697 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH--~~~V~sl~~sp 774 (1915)
...+. .......+.+++++.+..|+.+....+.|...++........+... .....+|++..
T Consensus 155 ~~~l~----------------~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~~ 218 (266)
T d1ijqa1 155 IYSLV----------------TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE 218 (266)
T ss_dssp EEEEE----------------CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET
T ss_pred eeccc----------------ccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEEC
Confidence 22111 1122346789999999888888766789999998655444443332 23456777763
Q ss_pred CCCCEEEEEecCceEEEEECCCCcc
Q psy9598 775 FDSRVLLSAGHDGLIIIWDILSSKQ 799 (1915)
Q Consensus 775 ~dg~~LaSgs~DG~I~IWdl~s~~~ 799 (1915)
+.++.+-..++.|...+..++..
T Consensus 219 --~~ly~td~~~~~I~~~~~~~g~~ 241 (266)
T d1ijqa1 219 --DKVFWTDIINEAIFSANRLTGSD 241 (266)
T ss_dssp --TEEEEEETTTTEEEEEETTTCCC
T ss_pred --CEEEEEECCCCeEEEEECCCCcc
Confidence 45555556778888888877765
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=96.24 E-value=0.36 Score=59.47 Aligned_cols=67 Identities=9% Similarity=-0.063 Sum_probs=45.4
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEeecCCCC----------e-EEEEeccCccCCCcEEEEEeCCCeEEEEecccCcccc
Q psy9598 532 LLAAGTVDKTIRIWNLQTLAPISVLVGHQGI----------I-TGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDIS 600 (1915)
Q Consensus 532 ~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~----------V-~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~ 600 (1915)
.|+.++.++.|.-.|..||+.+..+...... + ..++.. +..++.++.++.|.-.|..++..+.
T Consensus 68 ~vyv~t~~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~v~~~~~~g~l~Alda~tG~~~w 141 (560)
T d1kv9a2 68 VIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALW------GDKVYVGTLDGRLIALDAKTGKAIW 141 (560)
T ss_dssp EEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEE------BTEEEEECTTSEEEEEETTTCCEEE
T ss_pred EEEEECCCCeEEEEeCCCCCEEEEECCCCCccccccccccccccCccee------CCeEEEEeCCCEEEEEECCCCcEEe
Confidence 5666777888989999999998876422110 0 111111 2578888999999999998887665
Q ss_pred ceec
Q psy9598 601 KTVF 604 (1915)
Q Consensus 601 ~~~~ 604 (1915)
....
T Consensus 142 ~~~~ 145 (560)
T d1kv9a2 142 SQQT 145 (560)
T ss_dssp EEEC
T ss_pred ccCc
Confidence 5443
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=96.07 E-value=0.12 Score=59.83 Aligned_cols=246 Identities=9% Similarity=-0.009 Sum_probs=131.4
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEeecCC---------------------------------------CCe--EEEEecc
Q psy9598 532 LLAAGTVDKTIRIWNLQTLAPISVLVGHQ---------------------------------------GII--TGVNFCP 570 (1915)
Q Consensus 532 ~LaSgs~DgtIrVWDl~tg~~~~~l~~h~---------------------------------------~~V--~sl~fsp 570 (1915)
.|.||+..|.|+|+-+-+++.+..+.-.+ +.. ..+.|..
T Consensus 15 ~f~SgG~sG~v~v~G~PSmR~l~~ipvF~~~~~~G~G~~~es~~il~~~~~~~t~~~l~~~g~~~~~~GD~HHP~~S~Td 94 (459)
T d1fwxa2 15 GFWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTE 94 (459)
T ss_dssp EEECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCC--------------CCCCCBCCEEEEEET
T ss_pred EEeeCCccceEEEEecCCcceEEEeeeecCCCCcccCcchhHHHHhhcccChhhhhhhhccCcccccCCCcCCCcccccC
Confidence 35677888888888888777665542100 011 1233322
Q ss_pred CccCCCcEEEEEe-CCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEEC--CCCcEEEEEeCCC-------
Q psy9598 571 LEVNGFNYLASTS-TDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFS--PGGLFLATGSGDH------- 640 (1915)
Q Consensus 571 ~~~~d~~~L~sgs-~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs--pdg~~Lasgs~Dg------- 640 (1915)
+..||++|++.. .++.|-+.|+.+.++....... ....+..+... |...++++++...
T Consensus 95 -GtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iP-----------n~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg 162 (459)
T d1fwxa2 95 -GKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIP-----------NAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDG 162 (459)
T ss_dssp -TEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECS-----------SCCSEEEEEECCSSBCSEEEEEECSCEESSCSS
T ss_pred -CccceeEEEEEcCCCceEEEEECcceeeeEEEecC-----------CCCCCceeecccCCCeEEEEccCccccccCCCC
Confidence 112566766655 6788999999887654333222 11233444443 3444565555422
Q ss_pred -----------eEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCC---------------cEEEEEccC
Q psy9598 641 -----------HVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDG---------------TALIWYYKC 694 (1915)
Q Consensus 641 -----------~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG---------------~I~IWDl~~ 694 (1915)
.+.++|... ......+. -.+....+.++++|.++++.+.+. .+.++++..
T Consensus 163 ~~l~d~~~y~~~~t~ID~~t---m~V~~QV~-V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~r 238 (459)
T d1fwxa2 163 TNMEDVANYVNVFTAVDADK---WEVAWQVL-VSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAE 238 (459)
T ss_dssp SSTTCGG-EEEEEEEEETTT---TEEEEEEE-ESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHH
T ss_pred ccccchhhcceEEEEEecCC---ceEEEEee-eCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHH
Confidence 245566532 22222221 123566789999999998877542 244444321
Q ss_pred C-------ceEEe----eecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCc--------
Q psy9598 695 S-------QWRFI----RLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGD-------- 755 (1915)
Q Consensus 695 ~-------~~~~~----~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~-------- 755 (1915)
. ....+ ..+..... . ...............+.++|||+++++++..+.++.|+|+....
T Consensus 239 ie~av~~Gk~~eingV~VVD~~~~~-~-~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~ 316 (459)
T d1fwxa2 239 IEKAIAAGDYQELNGVKVVDGRKEA-S-SLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENAD 316 (459)
T ss_dssp HHHHHHHTCSEEETTEEEEECSGG----CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-
T ss_pred hHHhhhcCCcEEeCCceeecccccC-C-cceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCC
Confidence 1 00000 00000000 0 00000111123345689999999999999889999999985311
Q ss_pred ---eEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCC
Q psy9598 756 ---LVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILS 796 (1915)
Q Consensus 756 ---~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s 796 (1915)
.+..-....-.-...+|.. .|....|.--|..|.-|++..
T Consensus 317 ~~~~~~~e~elglgPLht~fd~-~g~aytslfids~v~kw~~~~ 359 (459)
T d1fwxa2 317 PRSAVVAEPELGLGPLHTAFDG-RGNAYTSLFLDSQVVKWNIED 359 (459)
T ss_dssp GGGGEEECCBCCSCEEEEEECT-TSEEEEEETTTTEEEEEEHHH
T ss_pred ccccEEeecccCcCccccccCC-CceEEEEeeccceEEEEecch
Confidence 1111111122334556777 666566666799999999853
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.92 E-value=1.7 Score=47.67 Aligned_cols=260 Identities=8% Similarity=0.055 Sum_probs=143.7
Q ss_pred CcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCC
Q psy9598 540 KTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNA 619 (1915)
Q Consensus 540 gtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (1915)
..|.|-|+..+..+..-.- .--+.-.+|.. ..|+.-+ ..++.+||+.+...+....+..+
T Consensus 45 ~~VvIidl~n~~~~~Rrpi---~AdsAIMhP~~----~IiALra-g~~LQiFnletK~klks~~~~e~------------ 104 (327)
T d1utca2 45 AQVVIIDMNDPSNPIRRPI---SADSAIMNPAS----KVIALKA-GKTLQIFNIEMKSKMKAHTMTDD------------ 104 (327)
T ss_dssp EEEEEEETTSTTSCEEEEC---CCSEEEECSSS----SEEEEEE-TTEEEEEETTTTEEEEEEECSSC------------
T ss_pred ceEEEEECCCCCcceeccc---chhhhhcCCCC----cEEEEec-CCeEEEEehhHhhhhceEEcCCC------------
Confidence 4688888876553221111 11234456643 5666555 56899999999987777776633
Q ss_pred ceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccC--CCCeeEEEEcCCCCEEEEEe-------CCCcEEEE
Q psy9598 620 HILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEH--SDKVDSIQWSHSHLRFVSGS-------RDGTALIW 690 (1915)
Q Consensus 620 ~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h--~~~V~sl~fspdg~~L~sgs-------~DG~I~IW 690 (1915)
|.--.|-.+.. |+..+ +..|+-|++.+...+..++...+. ...|..-..+++.++++..+ -.|.+.+|
T Consensus 105 -VvfWkWis~~~-L~lVT-~taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLY 181 (327)
T d1utca2 105 -VTFWKWISLNT-VALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLY 181 (327)
T ss_dssp -CCEEEESSSSE-EEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEE
T ss_pred -cEEEEecCCCE-EEEEc-CCceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEE
Confidence 33344554443 33332 357999999765555555443221 24566677788888776543 23667888
Q ss_pred EccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCc---e------EEEee
Q psy9598 691 YYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGD---L------VQVLK 761 (1915)
Q Consensus 691 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~---~------i~~l~ 761 (1915)
.........+.-.. .+... .......+...+.|++.- +...+.++|.++.+.. . +..+-
T Consensus 182 S~er~~sQ~ieGha-a~F~~--~~~~g~~~~~~lf~fa~r---------~~~~~kLhIiEig~~~~g~~~f~kk~vdi~f 249 (327)
T d1utca2 182 SVDRKVSQPIEGHA-ASFAQ--FKMEGNAEESTLFCFAVR---------GQAGGKLHIIEVGTPPTGNQPFPKKAVDVFF 249 (327)
T ss_dssp ETTTTEEEEECCSE-EEEEE--ECCTTCSSCEEEEEEEEE---------ETTEEEEEEEECSCCCTTCCCCCCEEEECCC
T ss_pred EeccCcCcccccee-eeeEE--EEcCCCCCCceEEEEEEC---------CCCCcEEEEEEcCCCccCCCCCcceeEEEEC
Confidence 77655422211000 00000 000001111223222221 1113678888876521 1 11111
Q ss_pred ---CCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEEeCCCeE
Q psy9598 762 ---GHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHL 838 (1915)
Q Consensus 762 ---gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~dG~I 838 (1915)
.-.+--.++.+++ ...++..-+.-|.|++||+.++.+ +..-. .....|+..+-+....=+++....|.|
T Consensus 250 ppea~~DFPvamqvs~-kygiiyviTK~G~i~lyDleTgt~--i~~nR-----Is~~~iF~~a~~~~~~Gi~~VNr~GqV 321 (327)
T d1utca2 250 PPEAQNDFPVAMQISE-KHDVVFLITKYGYIHLYDLETGTC--IYMNR-----ISGETIFVTAPHEATAGIIGVNRKGQV 321 (327)
T ss_dssp CTTCTTCCEEEEEEET-TTTEEEEEETTSEEEEEETTTCCE--EEEEE-----CCSSCEEEEEEETTTTEEEEEETTSEE
T ss_pred CccccCCcEEEEEeec-cCCEEEEEecCcEEEEEEcccccE--EEEee-----cCCCceEEeccCCCCceEEEECCCCeE
Confidence 1133456778887 777888899999999999999988 33222 223556655555555556666677877
Q ss_pred EEEe
Q psy9598 839 LVYG 842 (1915)
Q Consensus 839 ~Iwd 842 (1915)
....
T Consensus 322 l~vs 325 (327)
T d1utca2 322 LSVC 325 (327)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6543
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.76 E-value=1.6 Score=53.47 Aligned_cols=67 Identities=6% Similarity=-0.065 Sum_probs=44.9
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEeecCC--------CCe-EEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccc
Q psy9598 531 ILLAAGTVDKTIRIWNLQTLAPISVLVGHQ--------GII-TGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISK 601 (1915)
Q Consensus 531 ~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~--------~~V-~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~ 601 (1915)
..|++++.++.|.-.|..+|+.+..+.... ..+ ..+++. +..|+.++.++.+.-.|..++..+..
T Consensus 69 g~vy~~t~~~~v~AlDa~TG~~lW~~~~~~~~~~~~~~~~~~rg~a~~------~~~i~~~t~~~~l~alda~tG~~~W~ 142 (582)
T d1flga_ 69 GVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIY------GDKVFFGTLDASVVALNKNTGKVVWK 142 (582)
T ss_dssp TEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEE------TTEEEEEETTTEEEEEESSSCCEEEE
T ss_pred CEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCCccccccccccCCceEe------CCceEEecCCCeEEEecccccceeee
Confidence 356667778888888999999887764211 011 122232 25678889999998889998876554
Q ss_pred ee
Q psy9598 602 TV 603 (1915)
Q Consensus 602 ~~ 603 (1915)
..
T Consensus 143 ~~ 144 (582)
T d1flga_ 143 KK 144 (582)
T ss_dssp EE
T ss_pred ec
Confidence 43
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.99 E-value=2.7 Score=48.13 Aligned_cols=181 Identities=7% Similarity=0.001 Sum_probs=109.4
Q ss_pred cEEEEEEcCCCCEEEEEECCCcEEEEECC-------------CCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEE
Q psy9598 478 AVFCVLFDKLGEVIVTGADDLLIKLWRAR-------------DGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRI 544 (1915)
Q Consensus 478 ~V~~vafspdg~~LaTGs~Dg~I~IWd~~-------------tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrV 544 (1915)
....+++++...+||+|+.++ ++|..+. .......+ ..|..++|+.+ .|+... ++.+.+
T Consensus 38 ~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~~i----p~v~~vafs~d--~l~v~~-~~~l~~ 109 (381)
T d1xipa_ 38 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEI----PDVIFVCFHGD--QVLVST-RNALYS 109 (381)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEEC----TTEEEEEEETT--EEEEEE-SSEEEE
T ss_pred ccceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceeccCC----CCeEEEEeeCC--EEEEEe-CCCEEE
Confidence 455788888888899888885 5666532 11222222 25899999866 455543 556888
Q ss_pred EECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEE
Q psy9598 545 WNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCS 624 (1915)
Q Consensus 545 WDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l 624 (1915)
+++.+.........-...+.++.++| ..++....+|.+.++++..+....... ....+. -.+.+.|+
T Consensus 110 ~~~~~l~~~~~~~~~~~~~~~~~~~p------~~~~l~~~~~~~~~~~l~~~~~~~~~~--~v~~~~-----~~~~~~~v 176 (381)
T d1xipa_ 110 LDLEELSEFRTVTSFEKPVFQLKNVN------NTLVILNSVNDLSALDLRTKSTKQLAQ--NVTSFD-----VTNSQLAV 176 (381)
T ss_dssp EESSSTTCEEEEEECSSCEEEEEECS------SEEEEEETTSEEEEEETTTCCEEEEEE--SEEEEE-----ECSSEEEE
T ss_pred EEeeccccccccccccccccceecCC------ceeEEEecCCCEEEEEeccCccccccC--CcceEE-----ecCCceEE
Confidence 88876555555544566788888888 467777788999999988764211110 000000 12568899
Q ss_pred EECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEe
Q psy9598 625 SFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGS 682 (1915)
Q Consensus 625 ~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs 682 (1915)
+|++.|..+++|..++.-.--++ ..+..+.........|.+|.|-.+..++++-+
T Consensus 177 ~ws~kgkq~v~~~g~~~q~k~~i---~~~~~~~~p~~~~~~v~sI~WL~~~~F~vvy~ 231 (381)
T d1xipa_ 177 LLKDRSFQSFAWRNGEMEKQFEF---SLPSELEELPVEEYSPLSVTILSPQDFLAVFG 231 (381)
T ss_dssp EETTSCEEEEEEETTEEEEEEEE---CCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred EEeCCcEEEEEeCCCceeeccCC---CCccccCCCcCCCcceeEEEEecCceEEEEEC
Confidence 99999998888754432111122 11111111112345688999987776666553
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=93.46 E-value=2.9 Score=47.42 Aligned_cols=214 Identities=10% Similarity=0.093 Sum_probs=115.3
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEecc---CccCCCcEEEEEe-C-C--CeEEEEecccCcccc
Q psy9598 528 NRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCP---LEVNGFNYLASTS-T-D--GCIGFWKYKLDIDIS 600 (1915)
Q Consensus 528 pdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp---~~~~d~~~L~sgs-~-D--gtI~iWDl~~~~~~~ 600 (1915)
|...+++.....+-|.+||+. |+.+..+. .+.++.|..-. .. +....|+.++ . + .+|.+|.+.......
T Consensus 38 p~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~--~Gr~NNVDvr~~~~l~-~~~~di~vasnR~~~~~~l~~~~id~~~~~l 113 (353)
T d1h6la_ 38 PQNSKLITTNKKSGLAVYSLE-GKMLHSYH--TGKLNNVDIRYDFPLN-GKKVDIAAASNRSEGKNTIEIYAIDGKNGTL 113 (353)
T ss_dssp GGGCEEEEEETTSCCEEEETT-CCEEEECC--SSCEEEEEEEEEEEET-TEEEEEEEEEECCTTTCEEEEEEEETTTTEE
T ss_pred cCccEEEEEcCcCCEEEEcCC-CcEEEecc--cCCcCccccccccccC-CcceEEEEEeCCcCcceeEEEEEecCccccc
Confidence 345677777777679999996 88777764 35566555432 11 1122344444 2 2 368888876432111
Q ss_pred ceeccCccccccccCCCCCceEEEEE--CCC-Cc-EEEEEeCCCeEEEEEecCCCCC----ceeEEeccCCCCeeEEEEc
Q psy9598 601 KTVFHEPVMFNERIRPGNAHILCSSF--SPG-GL-FLATGSGDHHVRVYKMDGVDSP----LGILEVEEHSDKVDSIQWS 672 (1915)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~V~~l~f--spd-g~-~Lasgs~Dg~I~IwDl~~~~~~----~~i~~l~~h~~~V~sl~fs 672 (1915)
. .+..+.. ........++.+|+ ++. |. ++++...+|.+..|.+...... ..+..+ .....+-+|.+.
T Consensus 114 ~-~~~~~~~---p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f-~~~~q~EGCVvD 188 (353)
T d1h6la_ 114 Q-SITDPNR---PIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAF-KMNSQTEGMAAD 188 (353)
T ss_dssp E-ECSCSSS---CEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEE-ECSSCEEEEEEE
T ss_pred c-ccccccc---ccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeecc-CCCCccceEEEe
Confidence 1 1110000 00011123455555 664 43 5677778899999987432222 222233 234578888899
Q ss_pred CCCCEEEEEeCCCcEEEEEccCCc--eEEeeecccccCCCCccccccccccccEEEEEEC--CC-CCEEEEEEecCCeEE
Q psy9598 673 HSHLRFVSGSRDGTALIWYYKCSQ--WRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWD--AS-DRWVITAINFNFQIK 747 (1915)
Q Consensus 673 pdg~~L~sgs~DG~I~IWDl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~s--pd-g~~L~t~s~~Dg~I~ 747 (1915)
.....|+.+-.+.-|..+++.... ...... ..........+-.|++- .+ ..||++++..+++..
T Consensus 189 de~~~LyisEE~~Giw~~~a~~~~~~~~~~i~-----------~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~ 257 (353)
T d1h6la_ 189 DEYGSLYIAEEDEAIWKFSAEPDGGSNGTVID-----------RADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYA 257 (353)
T ss_dssp TTTTEEEEEETTTEEEEEESSTTSCSCCEEEE-----------ECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEE
T ss_pred CCCCcEEEecCccceEEEEeccCCCccceeee-----------cccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEE
Confidence 888899998887655444433111 000000 00011123445555543 33 348888887799999
Q ss_pred EEECCC-CceEEEee
Q psy9598 748 IWDAFN-GDLVQVLK 761 (1915)
Q Consensus 748 vwD~~t-g~~i~~l~ 761 (1915)
|||..+ ...+..|.
T Consensus 258 vydr~~~~~~~g~F~ 272 (353)
T d1h6la_ 258 IYERQGQNKYVADFQ 272 (353)
T ss_dssp EEESSTTCCEEEEEE
T ss_pred EEecCCCccccceEE
Confidence 999876 35555554
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=93.24 E-value=8.4 Score=43.24 Aligned_cols=62 Identities=10% Similarity=0.132 Sum_probs=40.3
Q ss_pred ccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEee--CCCCCeEEEEEccCCCCEEEEE
Q psy9598 722 IKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLK--GHTNEVFVLESHPFDSRVLLSA 783 (1915)
Q Consensus 722 ~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~--gH~~~V~sl~~sp~dg~~LaSg 783 (1915)
...+.|++++++++|+++....+.|++|++.....+.... .-.+..-.+.+.+.++.+.+++
T Consensus 206 ~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva~ 269 (340)
T d1v04a_ 206 DFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGC 269 (340)
T ss_dssp SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEE
T ss_pred CccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEEE
Confidence 3467899999999999998888999999986433222111 1223455666765345554443
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=92.22 E-value=14 Score=43.14 Aligned_cols=68 Identities=12% Similarity=0.026 Sum_probs=41.2
Q ss_pred EEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCC
Q psy9598 554 SVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPG 629 (1915)
Q Consensus 554 ~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspd 629 (1915)
.++...-...++|+|.|+ +++|++--..|.|++++..++......... .. ............|+|+|+
T Consensus 20 ~~ia~~L~~P~~la~~pd----g~llVter~~G~i~~v~~~~g~~~~i~~~~--~~--~~~~~ge~GLLgia~~Pd 87 (450)
T d1crua_ 20 KVILSNLNKPHALLWGPD----NQIWLTERATGKILRVNPESGSVKTVFQVP--EI--VNDADGQNGLLGFAFHPD 87 (450)
T ss_dssp EEEECCCSSEEEEEECTT----SCEEEEETTTCEEEEECTTTCCEEEEEECT--TC--CCCTTSSCSEEEEEECTT
T ss_pred EEEECCCCCceEEEEeCC----CeEEEEEecCCEEEEEECCCCcEeecccCC--cc--ccccCCCCceeeEEeCCC
Confidence 333333456789999994 477776656799999987766432211111 00 011233467889999985
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=91.93 E-value=4.5 Score=45.74 Aligned_cols=201 Identities=11% Similarity=0.137 Sum_probs=115.2
Q ss_pred CCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeC------CCCEEEEEeC--C--CcEEEEECCC-CceEE
Q psy9598 486 KLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDN------RNILLAAGTV--D--KTIRIWNLQT-LAPIS 554 (1915)
Q Consensus 486 pdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafsp------dg~~LaSgs~--D--gtIrVWDl~t-g~~~~ 554 (1915)
|...+|++....+-|.+||+ .|+.+..+. .+.++.|..-. .+..|+.++. + .+|.+|.+.. ...+.
T Consensus 38 p~~SlI~gTdK~~Gl~vYdL-~G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~ 114 (353)
T d1h6la_ 38 PQNSKLITTNKKSGLAVYSL-EGKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQ 114 (353)
T ss_dssp GGGCEEEEEETTSCCEEEET-TCCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEE
T ss_pred cCccEEEEEcCcCCEEEEcC-CCcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccc
Confidence 45667777777777999998 588888775 35566655432 2233555552 2 3688887752 33344
Q ss_pred EeecC-------CCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEEC
Q psy9598 555 VLVGH-------QGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFS 627 (1915)
Q Consensus 555 ~l~~h-------~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs 627 (1915)
.+... ...|..+|+......+..++++...+|.+..|.+....... .... ....+ .-...+-.|.+.
T Consensus 115 ~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~-v~~~----lvr~f-~~~~q~EGCVvD 188 (353)
T d1h6la_ 115 SITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGY-ISGK----KVRAF-KMNSQTEGMAAD 188 (353)
T ss_dssp ECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSS-EEEE----EEEEE-ECSSCEEEEEEE
T ss_pred cccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCc-eeeE----eeecc-CCCCccceEEEe
Confidence 33321 12467777733221133467778889999988774322110 0000 00011 112568889999
Q ss_pred CCCcEEEEEeCCCeEEEEEecCCC--CCceeEEecc--CCCCeeEEEEcC--C--CCEEEEEeCCCcEEEEEccCC
Q psy9598 628 PGGLFLATGSGDHHVRVYKMDGVD--SPLGILEVEE--HSDKVDSIQWSH--S--HLRFVSGSRDGTALIWYYKCS 695 (1915)
Q Consensus 628 pdg~~Lasgs~Dg~I~IwDl~~~~--~~~~i~~l~~--h~~~V~sl~fsp--d--g~~L~sgs~DG~I~IWDl~~~ 695 (1915)
.....|+.+-.+.-|..++..... ....+....+ ....+-.|++-. + |-+|+|.-.+++..|||..+.
T Consensus 189 de~~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~ 264 (353)
T d1h6la_ 189 DEYGSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQ 264 (353)
T ss_dssp TTTTEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTT
T ss_pred CCCCcEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 988899999887766666653221 1222222222 456778887543 2 334455556788999987653
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.39 E-value=2.6 Score=48.24 Aligned_cols=153 Identities=10% Similarity=0.031 Sum_probs=89.0
Q ss_pred CeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCC
Q psy9598 665 KVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNF 744 (1915)
Q Consensus 665 ~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg 744 (1915)
...-+++++...+|+.|+.++ +.|..+..-.... ... ..... .........|..++|+.+ .|++.. ++
T Consensus 38 ~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~---~~~--~~~~~--~~~~~~ip~v~~vafs~d--~l~v~~--~~ 105 (381)
T d1xipa_ 38 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHI---TSD--STPLT--FKWEKEIPDVIFVCFHGD--QVLVST--RN 105 (381)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHH---HSS--SCCCC--CSEEEECTTEEEEEEETT--EEEEEE--SS
T ss_pred ccceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHh---hcc--CCCCc--ceeccCCCCeEEEEeeCC--EEEEEe--CC
Confidence 455677888777888888876 4565543211000 000 00000 000111235888999754 455543 57
Q ss_pred eEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcC
Q psy9598 745 QIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSP 824 (1915)
Q Consensus 745 ~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSp 824 (1915)
.+.+++..+-........-..++..+.++| ..++....+|.+.++++..+.. ...........-.+.+.+++|++
T Consensus 106 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~p---~~~~l~~~~~~~~~~~l~~~~~--~~~~~~v~~~~~~~~~~~v~ws~ 180 (381)
T d1xipa_ 106 ALYSLDLEELSEFRTVTSFEKPVFQLKNVN---NTLVILNSVNDLSALDLRTKST--KQLAQNVTSFDVTNSQLAVLLKD 180 (381)
T ss_dssp EEEEEESSSTTCEEEEEECSSCEEEEEECS---SEEEEEETTSEEEEEETTTCCE--EEEEESEEEEEECSSEEEEEETT
T ss_pred CEEEEEeeccccccccccccccccceecCC---ceeEEEecCCCEEEEEeccCcc--ccccCCcceEEecCCceEEEEeC
Confidence 788888776544444444456788888887 5677788899999999988765 22111111111125577788888
Q ss_pred CCCEEEEEeC
Q psy9598 825 DGTTCALTDS 834 (1915)
Q Consensus 825 dg~~Lasg~~ 834 (1915)
.|..+++++.
T Consensus 181 kgkq~v~~~g 190 (381)
T d1xipa_ 181 RSFQSFAWRN 190 (381)
T ss_dssp SCEEEEEEET
T ss_pred CcEEEEEeCC
Confidence 8877777643
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=88.85 E-value=16 Score=40.74 Aligned_cols=193 Identities=9% Similarity=0.048 Sum_probs=100.1
Q ss_pred EEEEECCCCcEEEEEeC------------CCeEEEEEecCCCCCceeEEeccCC-----CCeeEEEE--cCCCC-EEEEE
Q psy9598 622 LCSSFSPGGLFLATGSG------------DHHVRVYKMDGVDSPLGILEVEEHS-----DKVDSIQW--SHSHL-RFVSG 681 (1915)
Q Consensus 622 ~~l~fspdg~~Lasgs~------------Dg~I~IwDl~~~~~~~~i~~l~~h~-----~~V~sl~f--spdg~-~L~sg 681 (1915)
-.++..|+|..+++++. .|.|.++|+...........+.+.. -....|.+ ..+|. +|++.
T Consensus 38 EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vv 117 (340)
T d1v04a_ 38 EDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVV 117 (340)
T ss_dssp CEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEE
T ss_pred ceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEE
Confidence 35677888877666542 4889999985433222222222111 12234443 34554 34443
Q ss_pred e---CCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEe--c------------CC
Q psy9598 682 S---RDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAIN--F------------NF 744 (1915)
Q Consensus 682 s---~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~--~------------Dg 744 (1915)
. ...+|-+|++....+....... . ........+.|++..+|.++++-.. . -+
T Consensus 118 nH~~~~~~ieif~~~~~~~~l~~~~~---v--------~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~ 186 (340)
T d1v04a_ 118 NHPGSSSTVEVFKFQEEEKSLLHLKT---I--------RHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLA 186 (340)
T ss_dssp ECSTTCCEEEEEEEETTTTEEEEEEE---E--------CCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCC
T ss_pred eccCCCceeEEEEEeCCCCeEEEEee---c--------CCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCC
Confidence 2 3467888887654432211110 0 1112344678888888888777321 0 11
Q ss_pred eEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEE-EEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEc
Q psy9598 745 QIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVL-LSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWS 823 (1915)
Q Consensus 745 ~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~L-aSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafS 823 (1915)
...+|....+....... .-...+.|+++| ++++| ++-+..+.|++|++..... +.... .+. -.+..-.+.+.
T Consensus 187 ~g~v~~~~~~~~~~~~~-~l~~pNGI~~s~-d~~~lyVa~t~~~~i~~y~~~~~~~--l~~~~-~~~--l~~~pDNi~~d 259 (340)
T d1v04a_ 187 WSFVTYYSPNDVRVVAE-GFDFANGINISP-DGKYVYIAELLAHKIHVYEKHANWT--LTPLR-VLS--FDTLVDNISVD 259 (340)
T ss_dssp CEEEEEECSSCEEEEEE-EESSEEEEEECT-TSSEEEEEEGGGTEEEEEEECTTSC--EEEEE-EEE--CSSEEEEEEEC
T ss_pred ceeEEEEcCCceEEEcC-CCCccceeEECC-CCCEEEEEeCCCCeEEEEEeCCCcc--cceEE-Eec--CCCCCCccEEe
Confidence 23444444444332222 334579999999 76655 4555678999999976443 22221 111 22445567776
Q ss_pred C-CCCEEEEE
Q psy9598 824 P-DGTTCALT 832 (1915)
Q Consensus 824 p-dg~~Lasg 832 (1915)
+ +|.+.+.+
T Consensus 260 ~~~g~lwva~ 269 (340)
T d1v04a_ 260 PVTGDLWVGC 269 (340)
T ss_dssp TTTCCEEEEE
T ss_pred cCCCEEEEEE
Confidence 5 44444433
|
| >d1wp5a_ b.68.10.1 (A:) Topoisomerase IV subunit A, ParC, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: GyrA/ParC C-terminal domain-like family: GyrA/ParC C-terminal domain-like domain: Topoisomerase IV subunit A, ParC, C-terminal domain species: Bacillus stearothermophilus [TaxId: 1422]
Probab=87.60 E-value=20 Score=39.67 Aligned_cols=200 Identities=12% Similarity=0.005 Sum_probs=106.7
Q ss_pred CCCCEEEEEECCCcEEEEECCCCc----EEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEE---EEECCC------Cce
Q psy9598 486 KLGEVIVTGADDLLIKLWRARDGK----LLATLRGCSGEISDIAIDNRNILLAAGTVDKTIR---IWNLQT------LAP 552 (1915)
Q Consensus 486 pdg~~LaTGs~Dg~I~IWd~~tg~----~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIr---VWDl~t------g~~ 552 (1915)
|+...+++-+.+|.|+--.+.+.+ .-..++. ...|..+........|+.-+..|.++ +|++.. |.+
T Consensus 3 ~~E~v~v~lS~~GyiKR~~~~~~~~~~~~~~~~k~-~D~v~~~~~~~t~d~ll~fT~~Grvy~l~v~eiP~~~~~s~G~p 81 (323)
T d1wp5a_ 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKD-TDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQH 81 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCT-TCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEE
T ss_pred CCCCEEEEEeCCCeEEEeeHHHhhhcCCCCCcccC-CceEEEEEEEcCCCEEEEEecCCEEEEEeeccCccccccccccc
Confidence 456678888888888865543210 0001222 23454444443334444445667554 444432 333
Q ss_pred EEEee--cCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCC
Q psy9598 553 ISVLV--GHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGG 630 (1915)
Q Consensus 553 ~~~l~--~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg 630 (1915)
+..+. .....|..+...... ....+|+..+..|.++...+..-........ .....+ .....+..+.+..+.
T Consensus 82 i~~ll~l~~~e~ii~~~~~~~~-~~~~~l~~~Tk~G~iKr~~l~~f~~~~~~~g----~~~i~L-~~~D~l~~v~~~~~~ 155 (323)
T d1wp5a_ 82 IANIIPIDRDEEIIKAIPINDF-ELNGYFLFVTRNGMVKKTELKHYKAQRYSKP----LTGINL-KNDDQVVDVHLTDGM 155 (323)
T ss_dssp GGGTSCCCTTCCEEEEEEESCT-TSSCEEEEEETTSEEEEEEGGGGCCSCCSSC----EECSCC-CTTCCEEEEEEECSC
T ss_pred ceeeecccCCcceEEEeecccc-ccceeEEEEeehhheeeccHHHhhhhhccch----hhhccc-cccccccceeccCCC
Confidence 32221 122334333332221 2457899999999999988754321110000 000111 233566677777777
Q ss_pred cEEEEEeCCCeEEEEEecCC------CCCceeEEeccCCCCee-EEEEcCCCCEEEEEeCCCcEEEEEcc
Q psy9598 631 LFLATGSGDHHVRVYKMDGV------DSPLGILEVEEHSDKVD-SIQWSHSHLRFVSGSRDGTALIWYYK 693 (1915)
Q Consensus 631 ~~Lasgs~Dg~I~IwDl~~~------~~~~~i~~l~~h~~~V~-sl~fspdg~~L~sgs~DG~I~IWDl~ 693 (1915)
..++.++..|.+..|+.... ..+.....+.. ...|. .+.+.+++..|++.+..|..+.-.+.
T Consensus 156 ~~i~l~t~~G~~lrf~~~~vr~~gr~a~GV~~ikL~~-~D~vv~~~~~~~~~~~ll~~T~~G~gKr~~~~ 224 (323)
T d1wp5a_ 156 NELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLKE-GDYIVSGQLITSKDESIVVATQRGAVKKMKLT 224 (323)
T ss_dssp SEEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCCCT-TCCEEEEEEECCTTCEEEEEETTSEEEEEEGG
T ss_pred eEEEEEEecceeeEeecccccccCccccccccccccc-ccccchhhhccccccceeeeeeeheeecccch
Confidence 78999999999999987521 11122222322 23344 44455667788888899988876554
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=86.74 E-value=19 Score=36.73 Aligned_cols=230 Identities=14% Similarity=0.116 Sum_probs=123.2
Q ss_pred CCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEe-----------
Q psy9598 488 GEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVL----------- 556 (1915)
Q Consensus 488 g~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l----------- 556 (1915)
..+|+++...|.|.++-+..++.+.-- ..+|.... .|.. +.|..+.+-|+..|+..+.+
T Consensus 26 d~ll~~~~seG~vni~~l~g~~~vkLt---kePI~~~~-~Pk~------~ldfi~f~RDV~kGkE~Hai~~~Nlk~~GEE 95 (313)
T d2hu7a1 26 DKLLVVGFSEGSVNAYLYDGGETVKLN---REPINSVL-DPHY------GVGRVILVRDVSKGAEQHALFKVNTSRPGEE 95 (313)
T ss_dssp TEEEEEEEETTEEEEEEESSSSCEECC---SSCCSEEC-EECT------TBSEEEEEEECSTTSCCEEEEEEETTSTTCE
T ss_pred CcEEEEEeccceEEEEEEeCCEEEEEe---cccccCcC-CCcc------CcceEEEEeehhcCcceeeEEEEccCCCCee
Confidence 458888888999999998877765432 23333222 1211 12333444455554443332
Q ss_pred ---ecCC-CCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECC-CCc
Q psy9598 557 ---VGHQ-GIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSP-GGL 631 (1915)
Q Consensus 557 ---~~h~-~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fsp-dg~ 631 (1915)
.... -.|.++++. +.+..++|+....+.+|-+..+........ .+..|.....+ ..|..+.|-. +..
T Consensus 96 ~~i~spk~vRI~S~~yd-----dk~vvF~Gased~~~LYviegGklrkL~~v-PpFsFVtDI~~--d~I~G~g~~~g~~~ 167 (313)
T d2hu7a1 96 QRLEAVKPMRILSGVDT-----GEAVVFTGATEDRVALYALDGGGLRELARL-PGFGFVSDIRG--DLIAGLGFFGGGRV 167 (313)
T ss_dssp EECTTSCSBEEEEEEEC-----SSCEEEEEECSSCEEEEEEETTEEEEEEEE-SSCEEEEEEET--TEEEEEEEEETTEE
T ss_pred eEecCCceEEEEEeeec-----CceEEEecccCCceEEEEEeCCceeeeccC-CCcceEEeccC--CeEEEEeeecCCcc
Confidence 1111 346666664 457888888887788888887754222221 23323222221 2344444432 222
Q ss_pred EEEEEeC-CCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCC---CcEEEEEccCCceEEeeeccccc
Q psy9598 632 FLATGSG-DHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRD---GTALIWYYKCSQWRFIRLDMNTC 707 (1915)
Q Consensus 632 ~Lasgs~-Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~D---G~I~IWDl~~~~~~~~~~~~~~~ 707 (1915)
-++++.. .|.++|++. ..+.++...+.+... ++++-.. ....-+|++.+.......
T Consensus 168 sfF~adl~SG~lri~tp--------------keGS~~~ay~~~gnK-V~sdyEt~gEsywit~D~~s~~yerve~----- 227 (313)
T d2hu7a1 168 SLFTSNLSSGGLRVFDS--------------GEGSFSSASISPGMK-VTAGLETAREARLVTVDPRDGSVEDLEL----- 227 (313)
T ss_dssp EEEEEETTTEEEEEECC--------------SSEEEEEEEECTTSC-EEEEEEESSCEEEEEECTTTCCEEECCC-----
T ss_pred eEEEEecccCCEEEecC--------------CCCcccceeEccCce-eeeccCCCCceEEEEEecccCceeeeec-----
Confidence 2444444 667777664 344455555555444 3443321 122244666665433221
Q ss_pred CCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeC
Q psy9598 708 LPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKG 762 (1915)
Q Consensus 708 ~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~g 762 (1915)
+.. ....-....|+.+-+.|++++++++-. ||.-++|. +|+.+.+-+|
T Consensus 228 -P~k---d~~sy~p~~I~~~~Y~Pdd~L~iiakr-dG~s~lF~--nGk~in~p~G 275 (313)
T d2hu7a1 228 -PSK---DFSSYRPTAITWLGYLPDGRLAVVARR-EGRSAVFI--DGERVEAPQG 275 (313)
T ss_dssp -SSC---HHHHHCCSEEEEEEECTTSCEEEEEEE-TTEEEEEE--TTEEECCCSS
T ss_pred -Ccc---cceeecceEEEeeeeCCCCcEEEEEec-CCchheee--cceEecCCCC
Confidence 110 001113356777889999999888888 99999987 5776665443
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=85.02 E-value=39 Score=38.92 Aligned_cols=63 Identities=16% Similarity=0.039 Sum_probs=43.8
Q ss_pred CCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEee--------cCCCCeEEEEeccCccCCCcEEEE
Q psy9598 519 GEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLV--------GHQGIITGVNFCPLEVNGFNYLAS 581 (1915)
Q Consensus 519 ~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~--------~h~~~V~sl~fsp~~~~d~~~L~s 581 (1915)
...++|+|.|+|++|++--..|.|++++..++....... .-.+....|+|+|+-..++.+.++
T Consensus 27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvs 97 (450)
T d1crua_ 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYIS 97 (450)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEE
T ss_pred CCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEEE
Confidence 467899999999988887557999999988776533221 123567899999965434444443
|