Psyllid ID: psy959

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------11
Protein Sequence
MVSTDKDLLKTHRSLLLQAIPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIERSDLAGNNREALYLNK
Secondary Structure (PSIPRED)
cccccccccccccEEEccccccccEEEEEcccccEEEEEcccccccccEEEEEccccccEEEEEcccccccEEEEEccccEEEEEEccccEEEEEccccccEEEEEccc
Secondary Structure Prediction (SSPRO)
cccEcccccccEEEEEEEcccccEEEEEcccccEEEEEEccccccHHHEEEEccccccEEEEEEcccccccEEEEEcccccEEEEEccccEEEEEEcccccEEEEEccc
Coil and Loop (DISEMBL)
MVSTDKDLLKTHRSLLLQaipgrrhfmppirlrtlyytdwgrfgtagkILRTTMAGSLKKVIIEkdlsqpsglaidfddemlYWTDAVREKIersdlagnnrealylnk
Flexible Loop (DISEMBL)
mvstdkdlLKTHRSLLlqaipgrrhfmppiRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIiekdlsqpsglaidfddEMLYWTDAVREkiersdlagnnrealylnk
Low Complexity Region (SEG)
MVSTDKDLLKTHRSLLLQAIPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIERSDLAGNNREALYLNK
Disordered region (IsUnstruct)
***********HRSLLLQAIPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKI*****************
Disordered Region (DISOPRED)
*VS*D**LLKTHRSLLLQAIPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIERSDLAGNNREALY***
Disordered Region (DISEMBL)
MVSTDKDLLKTHRSLLLQAIPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIERSDLAGNNREALYLNK
Disordered Region (DISPRO)
MVSTDKDLLKTHRSLLLQAIPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIERSDLAGNNREALYLN*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MVSTDKDLLKTHRSLLLQAIPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIERSDLAGNNREALYLNK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	109	2.2.26 [Sep-21-2011]
P98158	4660	Low-density lipoprotein r	yes	N/A	0.834	0.019	0.389	2e-13
P98164	4655	Low-density lipoprotein r	yes	N/A	0.623	0.014	0.422	1e-11
Q9QYP1	1905	Low-density lipoprotein r	no	N/A	0.623	0.035	0.436	3e-11
Q8VI56	1905	Low-density lipoprotein r	yes	N/A	0.623	0.035	0.436	3e-11
O75096	1905	Low-density lipoprotein r	no	N/A	0.623	0.035	0.436	3e-11
Q91VN0	1614	Low-density lipoprotein r	no	N/A	0.623	0.042	0.408	2e-10
O75581	1613	Low-density lipoprotein r	no	N/A	0.623	0.042	0.408	5e-10
P98157	4543	Low-density lipoprotein r	no	N/A	0.623	0.014	0.388	6e-10
O75197	1615	Low-density lipoprotein r	no	N/A	0.623	0.042	0.394	6e-10
O88572	1613	Low-density lipoprotein r	no	N/A	0.623	0.042	0.422	1e-09

>sp|P98158|LRP2_RAT Low-density lipoprotein receptor-related protein 2 OS=Rattus norvegicus GN=Lrp2 PE=1 SV=1

 Score = 74.3 bits (181), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/95 (38%), Positives = 57/95 (60%), Gaps = 4/95 (4%)

Query: 11   THRSLLLQAIPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQP 70
            ++R+++ +    R   + P R   +Y+TDWG   T  KI R T+ G+ +  I+   L  P
Sbjct: 2499 SNRAVIARVSKPRAIVLDPCR-GYMYWTDWG---TNAKIERATLGGNFRVPIVNTSLVWP 2554

Query: 71   SGLAIDFDDEMLYWTDAVREKIERSDLAGNNREAL 105
            +GLA+D + ++LYW DA  +KIERS L G NRE +
Sbjct: 2555 NGLALDLETDLLYWADASLQKIERSTLTGTNREVV 2589

Acts together with cubilin to mediate HDL endocytosis (By similarity). Receptor-mediated uptake of polybasic drugs such as aprotinin, aminoglycosides and polymyxin B.
Rattus norvegicus (taxid: 10116)

>sp|P98164|LRP2_HUMAN Low-density lipoprotein receptor-related protein 2 OS=Homo sapiens GN=LRP2 PE=1 SV=3

 Score = 68.6 bits (166), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/71 (42%), Positives = 45/71 (63%), Gaps = 3/71 (4%)

Query: 35   LYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIER 94
            LY+ DW    T  KI R T+ G+ +  I+   L  PSGL +D+++++LYW DA  ++IER
Sbjct: 2521 LYWADWD---THAKIERATLGGNFRVPIVNSSLVMPSGLTLDYEEDLLYWVDASLQRIER 2577

Query: 95   SDLAGNNREAL 105
            S L G +RE +
Sbjct: 2578 STLTGVDREVI 2588

Acts together with cubilin to mediate HDL endocytosis (By similarity). May participate in regulation of parathyroid-hormone and para-thyroid-hormone-related protein release.

Homo sapiens (taxid: 9606)

>sp|Q9QYP1|LRP4_RAT Low-density lipoprotein receptor-related protein 4 OS=Rattus norvegicus GN=Lrp4 PE=1 SV=2

 Score = 67.4 bits (163), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 31/71 (43%), Positives = 44/71 (61%), Gaps = 3/71 (4%)

Query: 35   LYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIER 94
            L++TDWG      KI R  + GS +KV+I  DL  P+GL +D+D   +YW DA  ++IE 
Sbjct: 1485 LFWTDWGHIA---KIERANLDGSERKVLINADLGWPNGLTLDYDTRRIYWVDAHLDRIES 1541

Query: 95   SDLAGNNREAL 105
            +DL G  R+ L
Sbjct: 1542 ADLNGKLRQVL 1552

Mediates SOST-dependent inhibition of bone formation (By similarity). Functions as a specific facilitator of SOST-mediated inhibition of Wnt signaling (By similarity). Plays a key role in the formation and the maintenance of the neuromuscular junction (NMJ), the synapse between motor neuron and skeletal muscle. Directly binds AGRIN and recruits it to the MUSK signaling complex. Mediates the AGRIN-induced phosphorylation of MUSK, the kinase of the complex. The activation of MUSK in myotubes induces the formation of NMJ by regulating different processes including the transcription of specific genes and the clustering of AChR in the postsynaptic membrane. Alternatively, may be involved in the negative regulation of the canonical Wnt signaling pathway, being able to antagonize the LRP6-mediated activation of this pathway. More generally, has been proposed to function as a cell surface endocytic receptor binding and internalizing extracellular ligands for degradation by lysosomes.

Rattus norvegicus (taxid: 10116)

>sp|Q8VI56|LRP4_MOUSE Low-density lipoprotein receptor-related protein 4 OS=Mus musculus GN=Lrp4 PE=1 SV=3

 Score = 67.4 bits (163), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 31/71 (43%), Positives = 44/71 (61%), Gaps = 3/71 (4%)

Query: 35   LYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIER 94
            L++TDWG      KI R  + GS +KV+I  DL  P+GL +D+D   +YW DA  ++IE 
Sbjct: 1485 LFWTDWGHIA---KIERANLDGSERKVLINTDLGWPNGLTLDYDTRRIYWVDAHLDRIES 1541

Query: 95   SDLAGNNREAL 105
            +DL G  R+ L
Sbjct: 1542 ADLNGKLRQVL 1552

Mediates SOST-dependent inhibition of bone formation. Functions as a specific facilitator of SOST-mediated inhibition of Wnt signaling. Plays a key role in the formation and the maintenance of the neuromuscular junction (NMJ), the synapse between motor neuron and skeletal muscle. Directly binds AGRIN and recruits it to the MUSK signaling complex. Mediates the AGRIN-induced phosphorylation of MUSK, the kinase of the complex. The activation of MUSK in myotubes induces the formation of NMJ by regulating different processes including the transcription of specific genes and the clustering of AChR in the postsynaptic membrane. Alternatively, may be involved in the negative regulation of the canonical Wnt signaling pathway, being able to antagonize the LRP6-mediated activation of this pathway. More generally, has been proposed to function as a cell surface endocytic receptor binding and internalizing extracellular ligands for degradation by lysosomes.

Mus musculus (taxid: 10090)

>sp|O75096|LRP4_HUMAN Low-density lipoprotein receptor-related protein 4 OS=Homo sapiens GN=LRP4 PE=1 SV=4

 Score = 67.4 bits (163), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 31/71 (43%), Positives = 44/71 (61%), Gaps = 3/71 (4%)

Query: 35   LYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIER 94
            L++TDWG      KI R  + GS +KV+I  DL  P+GL +D+D   +YW DA  ++IE 
Sbjct: 1485 LFWTDWGHIA---KIERANLDGSERKVLINTDLGWPNGLTLDYDTRRIYWVDAHLDRIES 1541

Query: 95   SDLAGNNREAL 105
            +DL G  R+ L
Sbjct: 1542 ADLNGKLRQVL 1552

Mediates SOST-dependent inhibition of bone formation. Functions as a specific facilitator of SOST-mediated inhibition of Wnt signaling. Plays a key role in the formation and the maintenance of the neuromuscular junction (NMJ), the synapse between motor neuron and skeletal muscle. Directly binds AGRIN and recruits it to the MUSK signaling complex. Mediates the AGRIN-induced phosphorylation of MUSK, the kinase of the complex. The activation of MUSK in myotubes induces the formation of NMJ by regulating different processes including the transcription of specific genes and the clustering of AChR in the postsynaptic membrane. Alternatively, may be involved in the negative regulation of the canonical Wnt signaling pathway, being able to antagonize the LRP6-mediated activation of this pathway. More generally, has been proposed to function as a cell surface endocytic receptor binding and internalizing extracellular ligands for degradation by lysosomes.

Homo sapiens (taxid: 9606)

>sp|Q91VN0|LRP5_MOUSE Low-density lipoprotein receptor-related protein 5 OS=Mus musculus GN=Lrp5 PE=1 SV=3

 Score = 64.3 bits (155), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/71 (40%), Positives = 46/71 (64%), Gaps = 3/71 (4%)

Query: 35  LYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIER 94
           +Y+TDWG    A +I R  M GS +K+I++ D+  P+GL ID +++ LYW DA    I R
Sbjct: 164 MYWTDWGE---APRIERAGMDGSTRKIIVDSDIYWPNGLTIDLEEQKLYWADAKLSFIHR 220

Query: 95  SDLAGNNREAL 105
           ++L G+ R+ +
Sbjct: 221 ANLDGSFRQKV 231

Component of the Wnt-Fzd-LRP5-LRP6 complex that triggers beta-catenin signaling through inducing aggregation of receptor-ligand complexes into ribosome-sized signalsomes. Cell-surface coreceptor of Wnt/beta-catenin signaling, which plays a pivotal role in bone formation. The Wnt-induced Fzd/LRP6 coreceptor complex recruits DVL1 polymers to the plasma membrane which, in turn, recruits the AXIN1/GSK3B-complex to the cell surface promoting the formation of signalsomes and inhibiting AXIN1/GSK3-mediated phosphorylation and destruction of beta-catenin (By similarity). Appears be required for postnatal control of vascular regression in the eye. Required for posterior patterning of the epiblast during gastrulation.

Mus musculus (taxid: 10090)

>sp|O75581|LRP6_HUMAN Low-density lipoprotein receptor-related protein 6 OS=Homo sapiens GN=LRP6 PE=1 SV=2

 Score = 63.2 bits (152), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 29/71 (40%), Positives = 45/71 (63%), Gaps = 3/71 (4%)

Query: 35  LYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIER 94
           +Y+TDWG      KI R  M GS + +II  ++  P+GL +D++++ LYW DA    I +
Sbjct: 152 MYWTDWGE---VPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHK 208

Query: 95  SDLAGNNREAL 105
           S+L G NR+A+
Sbjct: 209 SNLDGTNRQAV 219

Component of the Wnt-Fzd-LRP5-LRP6 complex that triggers beta-catenin signaling through inducing aggregation of receptor-ligand complexes into ribosome-sized signalsomes. Cell-surface coreceptor of Wnt/beta-catenin signaling, which plays a pivotal role in bone formation. The Wnt-induced Fzd/LRP6 coreceptor complex recruits DVL1 polymers to the plasma membrane which, in turn, recruits the AXIN1/GSK3B-complex to the cell surface promoting the formation of signalsomes and inhibiting AXIN1/GSK3-mediated phosphorylation and destruction of beta-catenin. Required for posterior patterning of the epiblast during gastrulation.

Homo sapiens (taxid: 9606)

>sp|P98157|LRP1_CHICK Low-density lipoprotein receptor-related protein 1 OS=Gallus gallus GN=LRP1 PE=2 SV=1

 Score = 62.8 bits (151), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 49/72 (68%), Gaps = 4/72 (5%)

Query: 35   LYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIER 94
            L++T+WG++    +I R+ + G+ + V++   +S P+G+++D++D  LYW DA  +KIER
Sbjct: 2018 LFWTEWGQYP---RIERSRLDGTERMVLVNVSISWPNGISVDYEDGKLYWCDARTDKIER 2074

Query: 95   SDL-AGNNREAL 105
             DL  G NRE +
Sbjct: 2075 IDLETGENREVV 2086

Endocytic receptor involved in endocytosis and in phagocytosis of apoptotic cells. Involved in cellular lipid homeostasis. Involved in the plasma clearance of chylomicron remnants and activated LRPAP1 (alpha 2-macroglobulin), as well as the local metabolism of complexes between plasminogen activators and their endogenous inhibitors.

Gallus gallus (taxid: 9031)

>sp|O75197|LRP5_HUMAN Low-density lipoprotein receptor-related protein 5 OS=Homo sapiens GN=LRP5 PE=1 SV=2

 Score = 62.8 bits (151), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 28/71 (39%), Positives = 45/71 (63%), Gaps = 3/71 (4%)

Query: 35  LYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIER 94
           +Y+TDWG      +I R  M GS +K+I++ D+  P+GL ID +++ LYW DA    I R
Sbjct: 165 MYWTDWGE---TPRIERAGMDGSTRKIIVDSDIYWPNGLTIDLEEQKLYWADAKLSFIHR 221

Query: 95  SDLAGNNREAL 105
           ++L G+ R+ +
Sbjct: 222 ANLDGSFRQKV 232

Component of the Wnt-Fzd-LRP5-LRP6 complex that triggers beta-catenin signaling through inducing aggregation of receptor-ligand complexes into ribosome-sized signalsomes. Cell-surface coreceptor of Wnt/beta-catenin signaling, which plays a pivotal role in bone formation. The Wnt-induced Fzd/LRP6 coreceptor complex recruits DVL1 polymers to the plasma membrane which, in turn, recruits the AXIN1/GSK3B-complex to the cell surface promoting the formation of signalsomes and inhibiting AXIN1/GSK3-mediated phosphorylation and destruction of beta-catenin. Appears be required for postnatal control of vascular regression in the eye. Required for posterior patterning of the epiblast during gastrulation.

Homo sapiens (taxid: 9606)

>sp|O88572|LRP6_MOUSE Low-density lipoprotein receptor-related protein 6 OS=Mus musculus GN=Lrp6 PE=1 SV=1

 Score = 62.0 bits (149), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/71 (42%), Positives = 43/71 (60%), Gaps = 3/71 (4%)

Query: 35  LYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIER 94
           +Y+TDWG      KI R  M GS + VII  ++  P+GL +D+ +  LYW DA    I +
Sbjct: 152 MYWTDWGE---VPKIERAGMDGSSRFVIINTEIYWPNGLTLDYQERKLYWADAKLNFIHK 208

Query: 95  SDLAGNNREAL 105
           S+L G NR+A+
Sbjct: 209 SNLDGTNRQAV 219

Component of the Wnt-Fzd-LRP5-LRP6 complex that triggers beta-catenin signaling through inducing aggregation of receptor-ligand complexes into ribosome-sized signalsomes. Cell-surface coreceptor of Wnt/beta-catenin signaling, which plays a pivotal role in bone formation. The Wnt-induced Fzd/LRP6 coreceptor complex recruits DVL1 polymers to the plasma membrane which, in turn, recruits the AXIN1/GSK3B-complex to the cell surface promoting the formation of signalsomes and inhibiting AXIN1/GSK3-mediated phosphorylation and destruction of beta-catenin. Required for posterior patterning of the epiblast during gastrulation.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	109
307208125	4539	Low-density lipoprotein receptor-related	0.633	0.015	0.805	4e-30
328709384	4640	PREDICTED: low-density lipoprotein recep	0.633	0.014	0.833	4e-30
357622730	4358	hypothetical protein KGM_12959 [Danaus p	0.623	0.015	0.847	5e-30
350411403	4608	PREDICTED: low-density lipoprotein recep	0.633	0.014	0.819	6e-30
340729715	4608	PREDICTED: low-density lipoprotein recep	0.633	0.014	0.819	6e-30
347963623	4655	AGAP000331-PA [Anopheles gambiae str. PE	0.605	0.014	0.819	8e-30
307171853	4578	Low-density lipoprotein receptor-related	0.605	0.014	0.805	1e-29
383859306	4572	PREDICTED: low-density lipoprotein recep	0.633	0.015	0.805	2e-29
157124457	4525	low-density lipoprotein receptor (ldl) [	0.633	0.015	0.819	2e-29
312381670	4689	hypothetical protein AND_05975 [Anophele	0.605	0.014	0.791	5e-29

>gi|307208125|gb|EFN85629.1| Low-density lipoprotein receptor-related protein 2 [Harpegnathos saltator]

 Score =  135 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 58/72 (80%), Positives = 66/72 (91%)

Query: 34   TLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIE 93
            +LY+TDWGRFGT+GK+ +TTM GSLK+ II+KDLSQPSGLAID+DD MLYWTDAVREKIE
Sbjct: 2455 SLYFTDWGRFGTSGKVFKTTMGGSLKRAIIDKDLSQPSGLAIDYDDRMLYWTDAVREKIE 2514

Query: 94   RSDLAGNNREAL 105
            RSDL GNNRE L
Sbjct: 2515 RSDLEGNNREIL 2526

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328709384|ref|XP_001944217.2| PREDICTED: low-density lipoprotein receptor-related protein 2-like [Acyrthosiphon pisum]

 Score =  135 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 60/72 (83%), Positives = 65/72 (90%)

Query: 34   TLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIE 93
            TLY+TDWGRFGTAGKI RTTMAGSLKK II++DLSQPSGL IDFDD+MLYW+DAVREKIE
Sbjct: 2533 TLYFTDWGRFGTAGKIFRTTMAGSLKKAIIDRDLSQPSGLTIDFDDQMLYWSDAVREKIE 2592

Query: 94   RSDLAGNNREAL 105
            RS L G NRE L
Sbjct: 2593 RSTLDGGNREVL 2604

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357622730|gb|EHJ74141.1| hypothetical protein KGM_12959 [Danaus plexippus]

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 61/72 (84%), Positives = 64/72 (88%)

Query: 34   TLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIE 93
            TLYYTDWGRFGT+GKI RTTMAGSLKK II+KDLSQPSGL IDFDD MLYWTDAVREKIE
Sbjct: 2497 TLYYTDWGRFGTSGKIYRTTMAGSLKKAIIDKDLSQPSGLTIDFDDNMLYWTDAVREKIE 2556

Query: 94   RSDLAGNNREAL 105
            RS L G +RE L
Sbjct: 2557 RSKLDGTDREVL 2568

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350411403|ref|XP_003489337.1| PREDICTED: low-density lipoprotein receptor-related protein 2-like [Bombus impatiens]

 Score =  134 bits (338), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 59/72 (81%), Positives = 67/72 (93%)

Query: 34   TLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIE 93
            +LY+TDWGRFGT+GKI RTTMAGSLKK II+KDLSQPSGLAID++D MLYWTDAVREKIE
Sbjct: 2522 SLYFTDWGRFGTSGKIFRTTMAGSLKKAIIDKDLSQPSGLAIDYEDRMLYWTDAVREKIE 2581

Query: 94   RSDLAGNNREAL 105
            RS+L GNNR+ L
Sbjct: 2582 RSELDGNNRQIL 2593

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340729715|ref|XP_003403142.1| PREDICTED: low-density lipoprotein receptor-related protein 2-like [Bombus terrestris]

 Score =  134 bits (338), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 59/72 (81%), Positives = 67/72 (93%)

Query: 34   TLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIE 93
            +LY+TDWGRFGT+GKI RTTMAGSLKK II+KDLSQPSGLAID++D MLYWTDAVREKIE
Sbjct: 2522 SLYFTDWGRFGTSGKIFRTTMAGSLKKAIIDKDLSQPSGLAIDYEDRMLYWTDAVREKIE 2581

Query: 94   RSDLAGNNREAL 105
            RS+L GNNR+ L
Sbjct: 2582 RSELDGNNRQIL 2593

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347963623|ref|XP_310784.4| AGAP000331-PA [Anopheles gambiae str. PEST] gi|333467112|gb|EAA06237.5| AGAP000331-PA [Anopheles gambiae str. PEST]

 Score =  134 bits (337), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 59/72 (81%), Positives = 65/72 (90%)

Query: 34   TLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIE 93
            TLY+TDWGRFGT+GKI RTTMAGSLK+ II++DLSQPSGLAID+DD MLYWTDAVREKIE
Sbjct: 2517 TLYFTDWGRFGTSGKIFRTTMAGSLKRAIIDRDLSQPSGLAIDYDDRMLYWTDAVREKIE 2576

Query: 94   RSDLAGNNREAL 105
            RS L G NRE L
Sbjct: 2577 RSQLDGRNREVL 2588

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307171853|gb|EFN63508.1| Low-density lipoprotein receptor-related protein 2 [Camponotus floridanus]

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 58/72 (80%), Positives = 66/72 (91%)

Query: 34   TLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIE 93
            +LY+TDWGRFGT+GKI + TMAGSLK+ II+KDLSQPSGLAID+DD MLYWTDAVREKIE
Sbjct: 2487 SLYFTDWGRFGTSGKIFKATMAGSLKRAIIDKDLSQPSGLAIDYDDRMLYWTDAVREKIE 2546

Query: 94   RSDLAGNNREAL 105
            RSDL GNNR+ L
Sbjct: 2547 RSDLEGNNRKIL 2558

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383859306|ref|XP_003705136.1| PREDICTED: low-density lipoprotein receptor-related protein 2-like [Megachile rotundata]

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 58/72 (80%), Positives = 66/72 (91%)

Query: 34   TLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIE 93
            +LY+TDWGRFGT+GKI RTTMAGSLKK II+KDLSQPSGLAID++D MLYWTDAVREKIE
Sbjct: 2530 SLYFTDWGRFGTSGKIFRTTMAGSLKKAIIDKDLSQPSGLAIDYEDRMLYWTDAVREKIE 2589

Query: 94   RSDLAGNNREAL 105
            RS+L G NR+ L
Sbjct: 2590 RSELDGKNRQVL 2601

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157124457|ref|XP_001660469.1| low-density lipoprotein receptor (ldl) [Aedes aegypti] gi|108873980|gb|EAT38205.1| AAEL009869-PA [Aedes aegypti]

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 59/72 (81%), Positives = 65/72 (90%)

Query: 34   TLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIE 93
            TLYYTDWGRFGT+GKI RTTMAGSLK+ II+KDLSQPSGLAID+D+ MLYWTDAVREKIE
Sbjct: 2406 TLYYTDWGRFGTSGKIFRTTMAGSLKRAIIDKDLSQPSGLAIDYDERMLYWTDAVREKIE 2465

Query: 94   RSDLAGNNREAL 105
            RS L G +RE L
Sbjct: 2466 RSRLDGKDREVL 2477

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312381670|gb|EFR27366.1| hypothetical protein AND_05975 [Anopheles darlingi]

 Score =  131 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 57/72 (79%), Positives = 64/72 (88%)

Query: 34   TLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIE 93
            TLYYTDWGRFGT+GKI RTTMAGSLK+ I+++DLSQPSGLAID+DD MLYWTDAVREKIE
Sbjct: 2526 TLYYTDWGRFGTSGKIFRTTMAGSLKRAIVDRDLSQPSGLAIDYDDRMLYWTDAVREKIE 2585

Query: 94   RSDLAGNNREAL 105
            R+ L G  RE L
Sbjct: 2586 RAQLDGRGREVL 2597

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	109
FB|FBgn0261260	4769	mgl "Megalin" [Drosophila mela	0.660	0.015	0.791	1.1e-25
ZFIN|ZDB-GENE-050119-2	4673	lrp2a "low density lipoprotein	0.834	0.019	0.4	1.9e-12
UNIPROTKB|F1ML31	1897	LRP4 "Uncharacterized protein"	0.623	0.035	0.436	1.5e-11
UNIPROTKB|F1SIB6	1898	LRP4 "Uncharacterized protein"	0.623	0.035	0.436	1.5e-11
RGD|68407	4660	Lrp2 "low density lipoprotein	0.834	0.019	0.389	1.7e-11
UNIPROTKB|P98158	4660	Lrp2 "Low-density lipoprotein	0.834	0.019	0.389	1.7e-11
UNIPROTKB|F1PST3	1904	LRP4 "Uncharacterized protein"	0.623	0.035	0.436	3.2e-11
RGD|619731	1905	Lrp4 "low density lipoprotein	0.623	0.035	0.436	3.2e-11
MGI|MGI:2442252	1905	Lrp4 "low density lipoprotein	0.623	0.035	0.436	3.2e-11
UNIPROTKB|O75096	1905	LRP4 "Low-density lipoprotein	0.623	0.035	0.436	3.2e-11

FB|FBgn0261260 mgl "Megalin" [Drosophila melanogaster (taxid:7227)]

 Score = 311 (114.5 bits), Expect = 1.1e-25, P = 1.1e-25
 Identities = 57/72 (79%), Positives = 65/72 (90%)

Query:    34 TLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIE 93
             TL++TDWGRFGT+GKI RTTMAGSLK+ I++KDLSQPSGLAID+D+  LYWTDAVREKIE
Sbjct:  2645 TLFFTDWGRFGTSGKIFRTTMAGSLKRAIVDKDLSQPSGLAIDYDERRLYWTDAVREKIE 2704

Query:    94 RSDLAGNNREAL 105
             RSDL G NRE L
Sbjct:  2705 RSDLDGQNRELL 2716

GO:0005041 "low-density lipoprotein receptor activity" evidence=ISS

GO:0005509 "calcium ion binding" evidence=IEA

GO:0030100 "regulation of endocytosis" evidence=IMP

GO:0016324 "apical plasma membrane" evidence=IDA

GO:0040003 "chitin-based cuticle development" evidence=IMP

GO:0048082 "regulation of adult chitin-containing cuticle pigmentation" evidence=IMP

ZFIN|ZDB-GENE-050119-2 lrp2a "low density lipoprotein receptor-related protein 2a" [Danio rerio (taxid:7955)]

 Score = 186 (70.5 bits), Expect = 1.9e-12, P = 1.9e-12
 Identities = 38/95 (40%), Positives = 56/95 (58%)

Query:    11 THRSLLLQAIPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQP 70
             + R+++ Q    R   + P R   +Y+TDWG   T+ KI R T+ G+ +  I+   L  P
Sbjct:  2498 SQRTVVAQVPRPRAIMLDPCR-GYMYWTDWG---TSAKIERATLGGNFRTEIVNTSLVWP 2553

Query:    71 SGLAIDFDDEMLYWTDAVREKIERSDLAGNNREAL 105
             +GL +D+DD+ LYW DA  +KIER  L G NRE +
Sbjct:  2554 NGLTLDYDDQRLYWADASLQKIERCSLTGTNREVI 2588

GO:0005509 "calcium ion binding" evidence=IEA

GO:0006898 "receptor-mediated endocytosis" evidence=IMP

GO:0070293 "renal absorption" evidence=IMP

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1ML31 LRP4 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 162 (62.1 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
 Identities = 31/71 (43%), Positives = 45/71 (63%)

Query:    35 LYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIER 94
             L++TDWG      KI R  + GS +KV+I  DL  P+GL +D+D   +YW DA  ++IE 
Sbjct:  1477 LFWTDWGHIA---KIERANLDGSERKVLINTDLGWPNGLTLDYDTRRIYWVDAHLDRIES 1533

Query:    95 SDLAGNNREAL 105
             +DL+G  R+ L
Sbjct:  1534 ADLSGKLRQVL 1544

GO:0090090 "negative regulation of canonical Wnt receptor signaling pathway" evidence=IEA

GO:0051124 "synaptic growth at neuromuscular junction" evidence=IEA

GO:0043113 "receptor clustering" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0042733 "embryonic digit morphogenesis" evidence=IEA

GO:0042475 "odontogenesis of dentin-containing tooth" evidence=IEA

GO:0030971 "receptor tyrosine kinase binding" evidence=IEA

GO:0030279 "negative regulation of ossification" evidence=IEA

GO:0009954 "proximal/distal pattern formation" evidence=IEA

GO:0009953 "dorsal/ventral pattern formation" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0001942 "hair follicle development" evidence=IEA

GO:0001932 "regulation of protein phosphorylation" evidence=IEA

GO:0001822 "kidney development" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

UNIPROTKB|F1SIB6 LRP4 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 162 (62.1 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
 Identities = 31/71 (43%), Positives = 45/71 (63%)

Query:    35 LYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIER 94
             L++TDWG      KI R  + GS +KV+I  DL  P+GL +D+D   +YW DA  ++IE 
Sbjct:  1478 LFWTDWGHIA---KIERANLDGSERKVLINTDLGWPNGLTLDYDTRRIYWVDAHLDRIES 1534

Query:    95 SDLAGNNREAL 105
             +DL+G  R+ L
Sbjct:  1535 ADLSGKLRQVL 1545

GO:0090090 "negative regulation of canonical Wnt receptor signaling pathway" evidence=IEA

GO:0051124 "synaptic growth at neuromuscular junction" evidence=IEA

GO:0043113 "receptor clustering" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0042733 "embryonic digit morphogenesis" evidence=IEA

GO:0042475 "odontogenesis of dentin-containing tooth" evidence=IEA

GO:0030971 "receptor tyrosine kinase binding" evidence=IEA

GO:0030279 "negative regulation of ossification" evidence=IEA

GO:0009954 "proximal/distal pattern formation" evidence=IEA

GO:0009953 "dorsal/ventral pattern formation" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0001942 "hair follicle development" evidence=IEA

GO:0001932 "regulation of protein phosphorylation" evidence=IEA

GO:0001822 "kidney development" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

RGD|68407 Lrp2 "low density lipoprotein receptor-related protein 2" [Rattus norvegicus (taxid:10116)]

 Score = 177 (67.4 bits), Expect = 1.7e-11, P = 1.7e-11
 Identities = 37/95 (38%), Positives = 57/95 (60%)

Query:    11 THRSLLLQAIPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQP 70
             ++R+++ +    R   + P R   +Y+TDWG   T  KI R T+ G+ +  I+   L  P
Sbjct:  2499 SNRAVIARVSKPRAIVLDPCR-GYMYWTDWG---TNAKIERATLGGNFRVPIVNTSLVWP 2554

Query:    71 SGLAIDFDDEMLYWTDAVREKIERSDLAGNNREAL 105
             +GLA+D + ++LYW DA  +KIERS L G NRE +
Sbjct:  2555 NGLALDLETDLLYWADASLQKIERSTLTGTNREVV 2589

GO:0004872 "receptor activity" evidence=IMP;TAS

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005615 "extracellular space" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005768 "endosome" evidence=ISO;IDA

GO:0005783 "endoplasmic reticulum" evidence=ISO

GO:0005794 "Golgi apparatus" evidence=ISO

GO:0005903 "brush border" evidence=ISO;IDA

GO:0005905 "coated pit" evidence=IEA;ISO

GO:0006766 "vitamin metabolic process" evidence=ISO;TAS

GO:0006898 "receptor-mediated endocytosis" evidence=ISO;IDA;IMP

GO:0007568 "aging" evidence=IEP

GO:0008283 "cell proliferation" evidence=ISO

GO:0010165 "response to X-ray" evidence=IDA

GO:0010951 "negative regulation of endopeptidase activity" evidence=IC

GO:0016020 "membrane" evidence=ISO;IDA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016197 "endosomal transport" evidence=IMP

GO:0016324 "apical plasma membrane" evidence=ISO;IDA

GO:0017124 "SH3 domain binding" evidence=IEA

GO:0020028 "hemoglobin import" evidence=IMP

GO:0030139 "endocytic vesicle" evidence=ISO

GO:0030165 "PDZ domain binding" evidence=IPI

GO:0030492 "hemoglobin binding" evidence=IDA

GO:0030900 "forebrain development" evidence=ISO

GO:0031100 "organ regeneration" evidence=IEP

GO:0031526 "brush border membrane" evidence=ISO;IDA

GO:0032526 "response to retinoic acid" evidence=IEP

GO:0033280 "response to vitamin D" evidence=IEP

GO:0042493 "response to drug" evidence=IEP

GO:0042953 "lipoprotein transport" evidence=IMP

GO:0043234 "protein complex" evidence=IDA

GO:0045056 "transcytosis" evidence=IMP

GO:0045177 "apical part of cell" evidence=ISO

GO:0046879 "hormone secretion" evidence=IMP

GO:0050750 "low-density lipoprotein particle receptor binding" evidence=IPI

GO:0042954 "lipoprotein transporter activity" evidence=IMP

UNIPROTKB|P98158 Lrp2 "Low-density lipoprotein receptor-related protein 2" [Rattus norvegicus (taxid:10116)]

 Score = 177 (67.4 bits), Expect = 1.7e-11, P = 1.7e-11
 Identities = 37/95 (38%), Positives = 57/95 (60%)

Query:    11 THRSLLLQAIPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQP 70
             ++R+++ +    R   + P R   +Y+TDWG   T  KI R T+ G+ +  I+   L  P
Sbjct:  2499 SNRAVIARVSKPRAIVLDPCR-GYMYWTDWG---TNAKIERATLGGNFRVPIVNTSLVWP 2554

Query:    71 SGLAIDFDDEMLYWTDAVREKIERSDLAGNNREAL 105
             +GLA+D + ++LYW DA  +KIERS L G NRE +
Sbjct:  2555 NGLALDLETDLLYWADASLQKIERSTLTGTNREVV 2589

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1PST3 LRP4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 159 (61.0 bits), Expect = 3.2e-11, Sum P(2) = 3.2e-11
 Identities = 31/71 (43%), Positives = 44/71 (61%)

Query:    35 LYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIER 94
             L++TDWG      KI R  + GS +KV+I  DL  P+GL +D+D   +YW DA  ++IE 
Sbjct:  1484 LFWTDWGHIA---KIERANLDGSERKVLINTDLGWPNGLTLDYDTRRIYWVDAHLDRIES 1540

Query:    95 SDLAGNNREAL 105
             +DL G  R+ L
Sbjct:  1541 ADLNGKLRQVL 1551

GO:0016021 "integral to membrane" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

RGD|619731 Lrp4 "low density lipoprotein receptor-related protein 4" [Rattus norvegicus (taxid:10116)]

 Score = 159 (61.0 bits), Expect = 3.2e-11, Sum P(2) = 3.2e-11
 Identities = 31/71 (43%), Positives = 44/71 (61%)

Query:    35 LYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIER 94
             L++TDWG      KI R  + GS +KV+I  DL  P+GL +D+D   +YW DA  ++IE 
Sbjct:  1485 LFWTDWGHIA---KIERANLDGSERKVLINADLGWPNGLTLDYDTRRIYWVDAHLDRIES 1541

Query:    95 SDLAGNNREAL 105
             +DL G  R+ L
Sbjct:  1542 ADLNGKLRQVL 1552

GO:0001822 "kidney development" evidence=IEA;ISO

GO:0001932 "regulation of protein phosphorylation" evidence=IEA;ISO

GO:0001942 "hair follicle development" evidence=IEA;ISO

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA;ISO

GO:0006897 "endocytosis" evidence=IEA

GO:0008104 "protein localization" evidence=ISO

GO:0009953 "dorsal/ventral pattern formation" evidence=IEA;ISO

GO:0009954 "proximal/distal pattern formation" evidence=IEA;ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0016055 "Wnt receptor signaling pathway" evidence=IEA

GO:0030178 "negative regulation of Wnt receptor signaling pathway" evidence=ISO

GO:0030279 "negative regulation of ossification" evidence=IEA;ISO

GO:0030326 "embryonic limb morphogenesis" evidence=ISO

GO:0030971 "receptor tyrosine kinase binding" evidence=IEA;ISO

GO:0042475 "odontogenesis of dentin-containing tooth" evidence=IEA;ISO

GO:0042733 "embryonic digit morphogenesis" evidence=IEA;ISO

GO:0042803 "protein homodimerization activity" evidence=IEA;ISO

GO:0043113 "receptor clustering" evidence=IEA;ISO

GO:0048856 "anatomical structure development" evidence=ISO

GO:0051124 "synaptic growth at neuromuscular junction" evidence=IEA;ISO

GO:0090090 "negative regulation of canonical Wnt receptor signaling pathway" evidence=IEA;ISO

MGI|MGI:2442252 Lrp4 "low density lipoprotein receptor-related protein 4" [Mus musculus (taxid:10090)]

 Score = 159 (61.0 bits), Expect = 3.2e-11, Sum P(2) = 3.2e-11
 Identities = 31/71 (43%), Positives = 44/71 (61%)

Query:    35 LYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIER 94
             L++TDWG      KI R  + GS +KV+I  DL  P+GL +D+D   +YW DA  ++IE 
Sbjct:  1485 LFWTDWGHIA---KIERANLDGSERKVLINTDLGWPNGLTLDYDTRRIYWVDAHLDRIES 1541

Query:    95 SDLAGNNREAL 105
             +DL G  R+ L
Sbjct:  1542 ADLNGKLRQVL 1552

GO:0001822 "kidney development" evidence=IMP

GO:0001932 "regulation of protein phosphorylation" evidence=IMP

GO:0001942 "hair follicle development" evidence=IMP

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0006897 "endocytosis" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0008104 "protein localization" evidence=IMP

GO:0009953 "dorsal/ventral pattern formation" evidence=IMP

GO:0009954 "proximal/distal pattern formation" evidence=IMP

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016055 "Wnt receptor signaling pathway" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0030178 "negative regulation of Wnt receptor signaling pathway" evidence=IDA

GO:0030279 "negative regulation of ossification" evidence=ISO

GO:0030326 "embryonic limb morphogenesis" evidence=IMP

GO:0030971 "receptor tyrosine kinase binding" evidence=IPI

GO:0042475 "odontogenesis of dentin-containing tooth" evidence=IMP

GO:0042733 "embryonic digit morphogenesis" evidence=IMP

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0043113 "receptor clustering" evidence=IMP

GO:0048856 "anatomical structure development" evidence=IMP

GO:0051124 "synaptic growth at neuromuscular junction" evidence=IMP

GO:0090090 "negative regulation of canonical Wnt receptor signaling pathway" evidence=ISO

UNIPROTKB|O75096 LRP4 "Low-density lipoprotein receptor-related protein 4" [Homo sapiens (taxid:9606)]

 Score = 159 (61.0 bits), Expect = 3.2e-11, Sum P(2) = 3.2e-11
 Identities = 31/71 (43%), Positives = 44/71 (61%)

Query:    35 LYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIER 94
             L++TDWG      KI R  + GS +KV+I  DL  P+GL +D+D   +YW DA  ++IE 
Sbjct:  1485 LFWTDWGHIA---KIERANLDGSERKVLINTDLGWPNGLTLDYDTRRIYWVDAHLDRIES 1541

Query:    95 SDLAGNNREAL 105
             +DL G  R+ L
Sbjct:  1542 ADLNGKLRQVL 1552

GO:0006897 "endocytosis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016055 "Wnt receptor signaling pathway" evidence=IEA

GO:0001822 "kidney development" evidence=IEA

GO:0001932 "regulation of protein phosphorylation" evidence=IEA

GO:0001942 "hair follicle development" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0009953 "dorsal/ventral pattern formation" evidence=IEA

GO:0009954 "proximal/distal pattern formation" evidence=IEA

GO:0030971 "receptor tyrosine kinase binding" evidence=IEA

GO:0042475 "odontogenesis of dentin-containing tooth" evidence=IEA

GO:0042733 "embryonic digit morphogenesis" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0043113 "receptor clustering" evidence=IEA

GO:0051124 "synaptic growth at neuromuscular junction" evidence=IEA

GO:0005509 "calcium ion binding" evidence=NAS

GO:0005575 "cellular_component" evidence=ND

GO:0090090 "negative regulation of canonical Wnt receptor signaling pathway" evidence=IMP;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0030279 "negative regulation of ossification" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	109
smart00135	43	smart00135, LY, Low-density lipoprotein-receptor Y	2e-12
COG3386	307	COG3386, COG3386, Gluconolactonase [Carbohydrate t	0.003

>gnl|CDD|214531 smart00135, LY, Low-density lipoprotein-receptor YWTD domain

 Score = 56.1 bits (136), Expect = 2e-12
 Identities = 17/43 (39%), Positives = 27/43 (62%)

Query: 60  KVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIERSDLAGNNR 102
           + ++   L  P+GLA+D+ +  LYWTD   + IE ++L G NR
Sbjct: 1   RTLLSSGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTNR 43

Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin. Length = 43

>gnl|CDD|225921 COG3386, COG3386, Gluconolactonase [Carbohydrate transport and metabolism]

 Score = 35.1 bits (81), Expect = 0.003
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 46  AGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIERSDLA 98
            G + R    G + +++ + DL+ P+GLA   D + LY  D    +I R DL 
Sbjct: 142 TGSLYRVDPDGGVVRLLDD-DLTIPNGLAFSPDGKTLYVADTPANRIHRYDLD 193

Length = 307

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	109
KOG1214|consensus	1289		99.93
KOG1214|consensus	1289		99.92
KOG1215|consensus	877		99.66
PF00058	42	Ldl_recept_b: Low-density lipoprotein receptor rep	99.56
KOG1215|consensus	877		99.43
smart00135	43	LY Low-density lipoprotein-receptor YWTD domain. T	99.31
smart00135	43	LY Low-density lipoprotein-receptor YWTD domain. T	99.16
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.96
PF00058	42	Ldl_recept_b: Low-density lipoprotein receptor rep	98.95
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.93
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.88
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	98.83
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.67
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	98.42
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	98.3
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	97.95
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	97.94
PF01436	28	NHL: NHL repeat; InterPro: IPR001258 The NHL repea	97.93
PF01436	28	NHL: NHL repeat; InterPro: IPR001258 The NHL repea	97.89
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.82
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	97.8
KOG4659|consensus	1899		97.7
KOG1520|consensus	376		97.62
PRK11028	330	6-phosphogluconolactonase; Provisional	97.46
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	97.44
KOG1520|consensus	376		97.35
KOG4499|consensus	310		97.3
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	97.29
COG3391	381	Uncharacterized conserved protein [Function unknow	97.29
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	97.27
PF01731	86	Arylesterase: Arylesterase; InterPro: IPR002640 Th	97.22
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	97.19
PRK11028	330	6-phosphogluconolactonase; Provisional	97.19
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	97.19
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	97.17
PF01731	86	Arylesterase: Arylesterase; InterPro: IPR002640 Th	97.13
KOG4659|consensus	1899		96.94
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	96.93
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	96.72
COG3391	381	Uncharacterized conserved protein [Function unknow	96.39
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	96.18
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	95.93
COG2133	399	Glucose/sorbosone dehydrogenases [Carbohydrate tra	95.83
PRK04792	448	tolB translocation protein TolB; Provisional	95.79
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	95.63
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	95.39
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	95.11
PRK02889	427	tolB translocation protein TolB; Provisional	95.02
PRK00178	430	tolB translocation protein TolB; Provisional	94.93
PRK04922	433	tolB translocation protein TolB; Provisional	94.9
PRK01742	429	tolB translocation protein TolB; Provisional	94.69
TIGR03032	335	conserved hypothetical protein TIGR03032. This pro	94.63
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	94.52
PRK03629	429	tolB translocation protein TolB; Provisional	94.47
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	94.31
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	94.22
PRK05137	435	tolB translocation protein TolB; Provisional	94.05
PF13449	326	Phytase-like: Esterase-like activity of phytase	93.96
PF13449	326	Phytase-like: Esterase-like activity of phytase	93.93
PF05787	524	DUF839: Bacterial protein of unknown function (DUF	93.56
COG4946	668	Uncharacterized protein related to the periplasmic	93.46
PRK04792	448	tolB translocation protein TolB; Provisional	93.43
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	92.98
PRK04043	419	tolB translocation protein TolB; Provisional	92.92
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	92.56
PRK05137	435	tolB translocation protein TolB; Provisional	92.43
PRK04922	433	tolB translocation protein TolB; Provisional	92.42
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	92.38
PRK04043	419	tolB translocation protein TolB; Provisional	92.26
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	92.11
KOG4499|consensus	310		92.03
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	92.02
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	91.85
PRK01029	428	tolB translocation protein TolB; Provisional	91.38
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	91.35
PF06739	38	SBBP: Beta-propeller repeat; InterPro: IPR010620 T	91.14
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	90.81
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	90.48
PRK02889	427	tolB translocation protein TolB; Provisional	90.01
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	89.67
KOG4649|consensus	354		89.63
PRK03629	429	tolB translocation protein TolB; Provisional	89.63
PRK00178	430	tolB translocation protein TolB; Provisional	89.14
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	88.08
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	84.72
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	84.59
COG2133	399	Glucose/sorbosone dehydrogenases [Carbohydrate tra	83.15
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	82.67
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	82.09
PRK02888	635	nitrous-oxide reductase; Validated	82.04
PRK01742	429	tolB translocation protein TolB; Provisional	81.53
PF14759	85	Reductase_C: Reductase C-terminal; PDB: 3FG2_P 3LX	80.36

>KOG1214|consensus

Probab=99.93  E-value=4.1e-26  Score=175.58  Aligned_cols=104  Identities=27%  Similarity=0.435  Sum_probs=99.9

Q ss_pred             eeecCCCCCccEEEe-cCCCCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCCcEEEEeCCCCCceeEEEecCCCe
Q psy959            3 STDKDLLKTHRSLLL-QAIPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEM   81 (109)
Q Consensus         3 ~~~~~l~G~~~~~li-~~l~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glaiD~~~~~   81 (109)
                      +..|.|||+.||+|+ ++|-+|++|++|+..|+|||+||.++  +++|++.+|||+++++|+.+++..|+||++|+.++.
T Consensus      1092 IevA~LdG~~rkvLf~tdLVNPR~iv~D~~rgnLYwtDWnRe--nPkIets~mDG~NrRilin~DigLPNGLtfdpfs~~ 1169 (1289)
T KOG1214|consen 1092 IEVALLDGSERKVLFYTDLVNPRAIVVDPIRGNLYWTDWNRE--NPKIETSSMDGENRRILINTDIGLPNGLTFDPFSKL 1169 (1289)
T ss_pred             hheeecCCceeeEEEeecccCcceEEeecccCceeecccccc--CCcceeeccCCccceEEeecccCCCCCceeCcccce
Confidence            567899999999999 89999999999999999999999986  899999999999999999999999999999999999


Q ss_pred             EEEEeCCCCeEEEEeCCCCCeEEEEeC
Q psy959           82 LYWTDAVREKIERSDLAGNNREALYLN  108 (109)
Q Consensus        82 lYw~D~~~~~I~~~~~dG~~~~~l~~~  108 (109)
                      |.|+|.+.++++....+|..|++++++
T Consensus      1170 LCWvDAGt~rleC~~p~g~gRR~i~~~ 1196 (1289)
T KOG1214|consen 1170 LCWVDAGTKRLECTLPDGTGRRVIQNN 1196 (1289)
T ss_pred             eeEEecCCcceeEecCCCCcchhhhhc
Confidence            999999999999999999999998864

>KOG1214|consensus

Probab=99.92  E-value=4.7e-25  Score=169.80  Aligned_cols=103  Identities=27%  Similarity=0.356  Sum_probs=97.3

Q ss_pred             eeecCCCCCccEEEe-cCCCCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCCcEEEEeCCCCCceeEEEecCCCe
Q psy959            3 STDKDLLKTHRSLLL-QAIPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEM   81 (109)
Q Consensus         3 ~~~~~l~G~~~~~li-~~l~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glaiD~~~~~   81 (109)
                      +.-+.|+|...++++ ++|.+|.|||||+..++|||+|..    ..+|++|.+||+.|++|+.+++.+|++|++|+.++.
T Consensus      1049 I~rasL~G~Ep~ti~n~~L~SPEGiAVDh~~Rn~ywtDS~----lD~IevA~LdG~~rkvLf~tdLVNPR~iv~D~~rgn 1124 (1289)
T KOG1214|consen 1049 ISRASLEGAEPETIVNSGLISPEGIAVDHIRRNMYWTDSV----LDKIEVALLDGSERKVLFYTDLVNPRAIVVDPIRGN 1124 (1289)
T ss_pred             cccccccCCCCceeecccCCCccceeeeeccceeeeeccc----cchhheeecCCceeeEEEeecccCcceEEeecccCc
Confidence            456789999999999 789999999999999999999998    799999999999999999999999999999999999


Q ss_pred             EEEEeCC--CCeEEEEeCCCCCeEEEEeCC
Q psy959           82 LYWTDAV--REKIERSDLAGNNREALYLNK  109 (109)
Q Consensus        82 lYw~D~~--~~~I~~~~~dG~~~~~l~~~~  109 (109)
                      |||+||.  ..+|++++|||+||++|++++
T Consensus      1125 LYwtDWnRenPkIets~mDG~NrRilin~D 1154 (1289)
T KOG1214|consen 1125 LYWTDWNRENPKIETSSMDGENRRILINTD 1154 (1289)
T ss_pred             eeeccccccCCcceeeccCCccceEEeecc
Confidence            9999996  679999999999999999863

>KOG1215|consensus

Probab=99.66  E-value=5.4e-16  Score=123.52  Aligned_cols=98  Identities=30%  Similarity=0.595  Sum_probs=90.8

Q ss_pred             eeecCCCCCccEEEe-cCCCCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCCcEEEEeCCCCCceeEEEecCCCe
Q psy959            3 STDKDLLKTHRSLLL-QAIPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEM   81 (109)
Q Consensus         3 ~~~~~l~G~~~~~li-~~l~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glaiD~~~~~   81 (109)
                      +..++++|+.|++++ ..+..|+++++||..|.+||+|++.   .++|.|+.|||+.+.+++..++.+|+||++|...++
T Consensus       504 i~v~~~~g~~~~vl~~~~l~~~r~~~v~p~~g~~~wtd~~~---~~~i~ra~~dg~~~~~l~~~~~~~p~glt~d~~~~~  580 (877)
T KOG1215|consen  504 IEVADLDGSSRKVLVSKDLDLPRSIAVDPEKGLMFWTDWGQ---PPRIERASLDGSERAVLVTNGILWPNGLTIDYETDR  580 (877)
T ss_pred             eEEEEccCCceeEEEecCCCCccceeeccccCeeEEecCCC---CchhhhhcCCCCCceEEEeCCccCCCcceEEeecce
Confidence            456678999999999 5679999999999999999999985   459999999999999999988999999999999999


Q ss_pred             EEEEeCCCC-eEEEEeCCCCCeE
Q psy959           82 LYWTDAVRE-KIERSDLAGNNRE  103 (109)
Q Consensus        82 lYw~D~~~~-~I~~~~~dG~~~~  103 (109)
                      +||+|.... .|++++++|.+|+
T Consensus       581 ~yw~d~~~~~~i~~~~~~g~~r~  603 (877)
T KOG1215|consen  581 LYWADAKLDYTIESANMDGQNRR  603 (877)
T ss_pred             eEEEcccCCcceeeeecCCCceE
Confidence            999999887 8999999999998

>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells

Probab=99.56  E-value=2.3e-14  Score=74.46  Aligned_cols=41  Identities=37%  Similarity=0.855  Sum_probs=38.5

Q ss_pred             CeEEEEecCCCCCCC-eEEEEEcCCCCcEEEEeCCCCCceeEEEec
Q psy959           33 RTLYYTDWGRFGTAG-KILRTTMAGSLKKVIIEKDLSQPSGLAIDF   77 (109)
Q Consensus        33 g~lywsd~~~~~~~~-~I~~~~~dG~~~~~l~~~~~~~p~glaiD~   77 (109)
                      ++|||+|+.    .. .|++++|||+++++++..++..|.|||||+
T Consensus         1 ~~iYWtD~~----~~~~I~~a~~dGs~~~~vi~~~l~~P~giaVD~   42 (42)
T PF00058_consen    1 GKIYWTDWS----QDPSIERANLDGSNRRTVISDDLQHPEGIAVDW   42 (42)
T ss_dssp             TEEEEEETT----TTEEEEEEETTSTSEEEEEESSTSSEEEEEEET
T ss_pred             CEEEEEECC----CCcEEEEEECCCCCeEEEEECCCCCcCEEEECC
Confidence            689999998    45 999999999999999999999999999996

The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....

>KOG1215|consensus

Probab=99.43  E-value=1.1e-12  Score=104.71  Aligned_cols=100  Identities=27%  Similarity=0.391  Sum_probs=89.7

Q ss_pred             ecCCCCCccEEEe-cCCCCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCCcEEEEeCCCCCceeEEEecCCCeEE
Q psy959            5 DKDLLKTHRSLLL-QAIPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLY   83 (109)
Q Consensus         5 ~~~l~G~~~~~li-~~l~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glaiD~~~~~lY   83 (109)
                      .+..+|....-++ .++..|.++|+|+..+++||+|..    ...|.++.++|+.+.+++...+..|+.+++|+..+.+|
T Consensus       463 ~~~~~~~~~~~~~~~g~~~~~~lavD~~~~~~y~tDe~----~~~i~v~~~~g~~~~vl~~~~l~~~r~~~v~p~~g~~~  538 (877)
T KOG1215|consen  463 RASQDGSSECELCGDGLCIPEGLAVDWIGDNIYWTDEG----NCLIEVADLDGSSRKVLVSKDLDLPRSIAVDPEKGLMF  538 (877)
T ss_pred             eeccCCCccceEeccCccccCcEEEEeccCCceecccC----CceeEEEEccCCceeEEEecCCCCccceeeccccCeeE
Confidence            4556677555555 789999999999999999999998    69999999999999999998889999999999999999


Q ss_pred             EEeCC-CCeEEEEeCCCCCeEEEEeC
Q psy959           84 WTDAV-REKIERSDLAGNNREALYLN  108 (109)
Q Consensus        84 w~D~~-~~~I~~~~~dG~~~~~l~~~  108 (109)
                      |+|++ ..+|+++.+||+.+.+++..
T Consensus       539 wtd~~~~~~i~ra~~dg~~~~~l~~~  564 (877)
T KOG1215|consen  539 WTDWGQPPRIERASLDGSERAVLVTN  564 (877)
T ss_pred             EecCCCCchhhhhcCCCCCceEEEeC
Confidence            99998 56899999999999999865

>smart00135 LY Low-density lipoprotein-receptor YWTD domain

Probab=99.31  E-value=1.2e-11  Score=63.69  Aligned_cols=42  Identities=40%  Similarity=0.756  Sum_probs=38.1

Q ss_pred             EEEeCCCCCceeEEEecCCCeEEEEeCCCCeEEEEeCCCCCe
Q psy959           61 VIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIERSDLAGNNR  102 (109)
Q Consensus        61 ~l~~~~~~~p~glaiD~~~~~lYw~D~~~~~I~~~~~dG~~~  102 (109)
                      +++...+..|+|||+|+.+++|||+|.....|++++++|+++
T Consensus         2 ~~~~~~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g~~~   43 (43)
T smart00135        2 TLLSEGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTNR   43 (43)
T ss_pred             EEEECCCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCCCCC
Confidence            355668999999999999999999999999999999999864

Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.

>smart00135 LY Low-density lipoprotein-receptor YWTD domain

Probab=99.16  E-value=2e-10  Score=58.93  Aligned_cols=40  Identities=23%  Similarity=0.370  Sum_probs=36.1

Q ss_pred             EecCCCCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCCc
Q psy959           16 LLQAIPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLK   59 (109)
Q Consensus        16 li~~l~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~~   59 (109)
                      +..++..|.++|+||..++|||+|..    ...|++++++|+.+
T Consensus         4 ~~~~~~~~~~la~d~~~~~lYw~D~~----~~~I~~~~~~g~~~   43 (43)
T smart00135        4 LSEGLGHPNGLAVDWIEGRLYWTDWG----LDVIEVANLDGTNR   43 (43)
T ss_pred             EECCCCCcCEEEEeecCCEEEEEeCC----CCEEEEEeCCCCCC
Confidence            34789999999999999999999998    69999999999863

Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.96  E-value=1.4e-08  Score=82.90  Aligned_cols=87  Identities=20%  Similarity=0.313  Sum_probs=71.7

Q ss_pred             EEecCCCCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCCcEEEEeC-------------CCCCceeEEEecCCCe
Q psy959           15 LLLQAIPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEK-------------DLSQPSGLAIDFDDEM   81 (109)
Q Consensus        15 ~li~~l~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~~~~l~~~-------------~~~~p~glaiD~~~~~   81 (109)
                      ++.+.+..|.++|+|+.+|.||++|..    +.+|.+.+.+|.....+...             .+..|.||++|+.++.
T Consensus       562 ~~~s~l~~P~gvavd~~~g~lyVaDs~----n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~  637 (1057)
T PLN02919        562 LLTSPLKFPGKLAIDLLNNRLFISDSN----HNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNL  637 (1057)
T ss_pred             cccccCCCCceEEEECCCCeEEEEECC----CCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCE
Confidence            444778999999999989999999998    79999999998765444321             2568999999999999


Q ss_pred             EEEEeCCCCeEEEEeCCCCCeEEE
Q psy959           82 LYWTDAVREKIERSDLAGNNREAL  105 (109)
Q Consensus        82 lYw~D~~~~~I~~~~~dG~~~~~l  105 (109)
                      ||++|...++|.+.++.+...+++
T Consensus       638 LYVaDt~n~~Ir~id~~~~~V~tl  661 (1057)
T PLN02919        638 LYVADTENHALREIDFVNETVRTL  661 (1057)
T ss_pred             EEEEeCCCceEEEEecCCCEEEEE
Confidence            999999999999998876655544

>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells

Probab=98.95  E-value=3.3e-09  Score=54.89  Aligned_cols=30  Identities=37%  Similarity=0.750  Sum_probs=27.7

Q ss_pred             CeEEEEeCCCC-eEEEEeCCCCCeEEEEeCC
Q psy959           80 EMLYWTDAVRE-KIERSDLAGNNREALYLNK  109 (109)
Q Consensus        80 ~~lYw~D~~~~-~I~~~~~dG~~~~~l~~~~  109 (109)
                      ++|||+|.... +|+++++||++++++++++
T Consensus         1 ~~iYWtD~~~~~~I~~a~~dGs~~~~vi~~~   31 (42)
T PF00058_consen    1 GKIYWTDWSQDPSIERANLDGSNRRTVISDD   31 (42)
T ss_dssp             TEEEEEETTTTEEEEEEETTSTSEEEEEESS
T ss_pred             CEEEEEECCCCcEEEEEECCCCCeEEEEECC
Confidence            58999999999 9999999999999999764

The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.93  E-value=4e-08  Score=67.85  Aligned_cols=88  Identities=23%  Similarity=0.220  Sum_probs=69.7

Q ss_pred             cEEEecCCCCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCC-----cEEEEeCCC--CCceeEEEecCCCeEEEE
Q psy959           13 RSLLLQAIPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSL-----KKVIIEKDL--SQPSGLAIDFDDEMLYWT   85 (109)
Q Consensus        13 ~~~li~~l~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~-----~~~l~~~~~--~~p~glaiD~~~~~lYw~   85 (109)
                      .+.+.+++..|+||+++|..+.||++|..    ..+|.+..++...     ++++.....  ..|.||++|. .++||.+
T Consensus       126 ~~~~~~~~~~pNGi~~s~dg~~lyv~ds~----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~-~G~l~va  200 (246)
T PF08450_consen  126 VTVVADGLGFPNGIAFSPDGKTLYVADSF----NGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDS-DGNLWVA  200 (246)
T ss_dssp             EEEEEEEESSEEEEEEETTSSEEEEEETT----TTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBT-TS-EEEE
T ss_pred             EEEEecCcccccceEECCcchheeecccc----cceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcC-CCCEEEE
Confidence            44556789999999999988899999998    6899999996332     455554332  3599999996 6789999


Q ss_pred             eCCCCeEEEEeCCCCCeEEE
Q psy959           86 DAVREKIERSDLAGNNREAL  105 (109)
Q Consensus        86 D~~~~~I~~~~~dG~~~~~l  105 (109)
                      ++..++|.+.+.+|+-...+
T Consensus       201 ~~~~~~I~~~~p~G~~~~~i  220 (246)
T PF08450_consen  201 DWGGGRIVVFDPDGKLLREI  220 (246)
T ss_dssp             EETTTEEEEEETTSCEEEEE
T ss_pred             EcCCCEEEEECCCccEEEEE
Confidence            99999999999999866554

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.88  E-value=5.2e-08  Score=67.29  Aligned_cols=78  Identities=28%  Similarity=0.390  Sum_probs=61.4

Q ss_pred             CCCCcceEEeeCCCCeEEEEecCCCCC--C--CeEEEEEcCCCCcEEEEeCCCCCceeEEEecCCCeEEEEeCCCCeEEE
Q psy959           19 AIPGRRHFMPPIRLRTLYYTDWGRFGT--A--GKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIER   94 (109)
Q Consensus        19 ~l~~p~~iavd~~~g~lywsd~~~~~~--~--~~I~~~~~dG~~~~~l~~~~~~~p~glaiD~~~~~lYw~D~~~~~I~~   94 (109)
                      .+..|+.+++|+ .|.+|+++......  .  +.|++...+|+. ..+ ...+..|+||++++..+.||++|...++|.+
T Consensus        84 ~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~g~v~~~~~~~~~-~~~-~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~  160 (246)
T PF08450_consen   84 PFNRPNDVAVDP-DGNLYVTDSGGGGASGIDPGSVYRIDPDGKV-TVV-ADGLGFPNGIAFSPDGKTLYVADSFNGRIWR  160 (246)
T ss_dssp             CTEEEEEEEE-T-TS-EEEEEECCBCTTCGGSEEEEEEETTSEE-EEE-EEEESSEEEEEEETTSSEEEEEETTTTEEEE
T ss_pred             ccCCCceEEEcC-CCCEEEEecCCCccccccccceEEECCCCeE-EEE-ecCcccccceEECCcchheeecccccceeEE
Confidence            467889999999 79999999764221  1  579999999443 333 3458899999999999999999999999999


Q ss_pred             EeCCC
Q psy959           95 SDLAG   99 (109)
Q Consensus        95 ~~~dG   99 (109)
                      ++++.
T Consensus       161 ~~~~~  165 (246)
T PF08450_consen  161 FDLDA  165 (246)
T ss_dssp             EEEET
T ss_pred             Eeccc
Confidence            99974

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=98.83  E-value=5.3e-08  Score=58.16  Aligned_cols=76  Identities=24%  Similarity=0.336  Sum_probs=58.6

Q ss_pred             ceEEeeCCCCeEEEEecCCC-------------CCCCeEEEEEcCCCCcEEEEeCCCCCceeEEEecCCCeEEEEeCCCC
Q psy959           24 RHFMPPIRLRTLYYTDWGRF-------------GTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVRE   90 (109)
Q Consensus        24 ~~iavd~~~g~lywsd~~~~-------------~~~~~I~~~~~dG~~~~~l~~~~~~~p~glaiD~~~~~lYw~D~~~~   90 (109)
                      .+++|++.+|.+||||...+             ...+++.+.++.....+++.. ++..|+|+++.+....|+.++....
T Consensus         1 ndldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~-~L~fpNGVals~d~~~vlv~Et~~~   79 (89)
T PF03088_consen    1 NDLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLD-GLYFPNGVALSPDESFVLVAETGRY   79 (89)
T ss_dssp             -EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEE-EESSEEEEEE-TTSSEEEEEEGGGT
T ss_pred             CceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehh-CCCccCeEEEcCCCCEEEEEeccCc
Confidence            37899997799999997532             246899999988877777765 6999999999999999999999999


Q ss_pred             eEEEEeCCCC
Q psy959           91 KIERSDLAGN  100 (109)
Q Consensus        91 ~I~~~~~dG~  100 (109)
                      +|.+.-+.|.
T Consensus        80 Ri~rywl~Gp   89 (89)
T PF03088_consen   80 RILRYWLKGP   89 (89)
T ss_dssp             EEEEEESSST
T ss_pred             eEEEEEEeCC
Confidence            9999988873

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.67  E-value=5e-07  Score=74.03  Aligned_cols=78  Identities=12%  Similarity=0.127  Sum_probs=63.7

Q ss_pred             CCCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCCcEEEEeC----------------CCCCceeEEEecCCCeEE
Q psy959           20 IPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEK----------------DLSQPSGLAIDFDDEMLY   83 (109)
Q Consensus        20 l~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~~~~l~~~----------------~~~~p~glaiD~~~~~lY   83 (109)
                      +..|.||++|+..+.||++|..    +.+|.+.++.+...+++...                .+..|.++++|+.++.||
T Consensus       623 f~~P~GIavd~~gn~LYVaDt~----n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~Ly  698 (1057)
T PLN02919        623 FNRPQGLAYNAKKNLLYVADTE----NHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVY  698 (1057)
T ss_pred             cCCCcEEEEeCCCCEEEEEeCC----CceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEE
Confidence            5679999999977889999987    68999998876665555321                156899999999999999


Q ss_pred             EEeCCCCeEEEEeCCCCC
Q psy959           84 WTDAVREKIERSDLAGNN  101 (109)
Q Consensus        84 w~D~~~~~I~~~~~dG~~  101 (109)
                      ++|.+.++|...+..+..
T Consensus       699 Vad~~~~~I~v~d~~~g~  716 (1057)
T PLN02919        699 IAMAGQHQIWEYNISDGV  716 (1057)
T ss_pred             EEECCCCeEEEEECCCCe
Confidence            999999999888875443

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=98.42  E-value=5.3e-06  Score=59.80  Aligned_cols=91  Identities=21%  Similarity=0.241  Sum_probs=64.2

Q ss_pred             CCccEEEecCCCCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcC---CCC--cE--EEEeCCCCCceeEEEecCCCeE
Q psy959           10 KTHRSLLLQAIPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMA---GSL--KK--VIIEKDLSQPSGLAIDFDDEML   82 (109)
Q Consensus        10 G~~~~~li~~l~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~d---G~~--~~--~l~~~~~~~p~glaiD~~~~~l   82 (109)
                      |+-.+.+...+..|+|||..|....||++|..    ..+|.+..+|   |..  ++  +.....-..|-|+++| ..+.|
T Consensus       152 g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~----~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vD-adG~l  226 (307)
T COG3386         152 GGVVRLLDDDLTIPNGLAFSPDGKTLYVADTP----ANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVD-ADGNL  226 (307)
T ss_pred             CCEEEeecCcEEecCceEECCCCCEEEEEeCC----CCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEe-CCCCE
Confidence            33343334559999999999988899999998    6999999987   322  22  2232334689999999 34444


Q ss_pred             E-EEeCCCCeEEEEeCCCCCeEEE
Q psy959           83 Y-WTDAVREKIERSDLAGNNREAL  105 (109)
Q Consensus        83 Y-w~D~~~~~I~~~~~dG~~~~~l  105 (109)
                      | ++-++..+|.+.+.+|.....+
T Consensus       227 w~~a~~~g~~v~~~~pdG~l~~~i  250 (307)
T COG3386         227 WVAAVWGGGRVVRFNPDGKLLGEI  250 (307)
T ss_pred             EEecccCCceEEEECCCCcEEEEE
Confidence            4 3333445999999998876654

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=98.30  E-value=7.8e-06  Score=58.96  Aligned_cols=77  Identities=25%  Similarity=0.440  Sum_probs=64.1

Q ss_pred             CCCcceEEeeCCCCeEEEEecC-----CC--CCCCeEEEEEcCCCCcEEEEeCCCCCceeEEEecCCCeEEEEeCCCCeE
Q psy959           20 IPGRRHFMPPIRLRTLYYTDWG-----RF--GTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKI   92 (109)
Q Consensus        20 l~~p~~iavd~~~g~lywsd~~-----~~--~~~~~I~~~~~dG~~~~~l~~~~~~~p~glaiD~~~~~lYw~D~~~~~I   92 (109)
                      +..|+.+.+|| .|.+|+++..     ..  ...+.++|.+.+|...+. +...+..|+||+++|.++.||++|+...+|
T Consensus       110 ~~r~ND~~v~p-dG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l-~~~~~~~~NGla~SpDg~tly~aDT~~~~i  187 (307)
T COG3386         110 LNRPNDGVVDP-DGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRL-LDDDLTIPNGLAFSPDGKTLYVADTPANRI  187 (307)
T ss_pred             cCCCCceeEcC-CCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEe-ecCcEEecCceEECCCCCEEEEEeCCCCeE
Confidence            57899999999 7999999987     22  235689998886555544 445589999999999999999999999999


Q ss_pred             EEEeCC
Q psy959           93 ERSDLA   98 (109)
Q Consensus        93 ~~~~~d   98 (109)
                      .++.++
T Consensus       188 ~r~~~d  193 (307)
T COG3386         188 HRYDLD  193 (307)
T ss_pred             EEEecC
Confidence            999998

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=97.95  E-value=0.00029  Score=51.75  Aligned_cols=93  Identities=15%  Similarity=0.128  Sum_probs=64.3

Q ss_pred             ecCCCCCc-c-EEEecCCCCcceEEeeCCCCeEEEEecCCCCCCCeEEEE-EcCCC-----CcEEEEeCC-------CCC
Q psy959            5 DKDLLKTH-R-SLLLQAIPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRT-TMAGS-----LKKVIIEKD-------LSQ   69 (109)
Q Consensus         5 ~~~l~G~~-~-~~li~~l~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~-~~dG~-----~~~~l~~~~-------~~~   69 (109)
                      ..+-||+. . +++.+++..|.||++++ .| ||.++.      ..|.+. +.+|.     .+++|+..-       .+.
T Consensus        54 d~dgdG~~d~~~vfa~~l~~p~Gi~~~~-~G-lyV~~~------~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~  125 (367)
T TIGR02604        54 DADGDGKYDKSNVFAEELSMVTGLAVAV-GG-VYVATP------PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHS  125 (367)
T ss_pred             cCCCCCCcceeEEeecCCCCccceeEec-CC-EEEeCC------CeEEEEeCCCCCCCCCCccEEEEEccCCCCCccccc
Confidence            34446663 2 44458899999999987 67 999863      568777 34442     445555421       244


Q ss_pred             ceeEEEecCCCeEEEEeCC-------------------CCeEEEEeCCCCCeEEEE
Q psy959           70 PSGLAIDFDDEMLYWTDAV-------------------REKIERSDLAGNNREALY  106 (109)
Q Consensus        70 p~glaiD~~~~~lYw~D~~-------------------~~~I~~~~~dG~~~~~l~  106 (109)
                      ++++++++ .++||+++..                   .+.|.+++.||+..+++.
T Consensus       126 ~~~l~~gp-DG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a  180 (367)
T TIGR02604       126 LNSLAWGP-DGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVA  180 (367)
T ss_pred             ccCceECC-CCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCeEEEEe
Confidence            88999997 5699998872                   157999999998776653

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=97.94  E-value=9.2e-05  Score=54.36  Aligned_cols=79  Identities=18%  Similarity=0.267  Sum_probs=58.4

Q ss_pred             ccEEEecCCC--------CcceEEeeCCCCeEEEEecCCC---------------CCCCeEEEEEcCCCCcEEEEeCCCC
Q psy959           12 HRSLLLQAIP--------GRRHFMPPIRLRTLYYTDWGRF---------------GTAGKILRTTMAGSLKKVIIEKDLS   68 (109)
Q Consensus        12 ~~~~li~~l~--------~p~~iavd~~~g~lywsd~~~~---------------~~~~~I~~~~~dG~~~~~l~~~~~~   68 (109)
                      .+++|++++.        .|.+++++| .|+||+++....               ...+.|.|++.||+..+++ ..++.
T Consensus       107 ~~~~l~~~~~~~~~~~~~~~~~l~~gp-DG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~-a~G~r  184 (367)
T TIGR02604       107 EREVLLSGFGGQINNHHHSLNSLAWGP-DGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVV-AHGFQ  184 (367)
T ss_pred             ccEEEEEccCCCCCcccccccCceECC-CCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCeEEEE-ecCcC
Confidence            4566766542        277899999 899999887310               0126799999999887765 46799


Q ss_pred             CceeEEEecCCCeEEEEeCCCCeEE
Q psy959           69 QPSGLAIDFDDEMLYWTDAVREKIE   93 (109)
Q Consensus        69 ~p~glaiD~~~~~lYw~D~~~~~I~   93 (109)
                      .|.||++|+ .+.||.+|.......
T Consensus       185 np~Gl~~d~-~G~l~~tdn~~~~~~  208 (367)
T TIGR02604       185 NPYGHSVDS-WGDVFFCDNDDPPLC  208 (367)
T ss_pred             CCccceECC-CCCEEEEccCCCcee
Confidence            999999997 678899998544333

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins

Probab=97.93  E-value=4.1e-05  Score=35.95  Aligned_cols=27  Identities=26%  Similarity=0.577  Sum_probs=24.2

Q ss_pred             CCCceeEEEecCCCeEEEEeCCCCeEEE
Q psy959           67 LSQPSGLAIDFDDEMLYWTDAVREKIER   94 (109)
Q Consensus        67 ~~~p~glaiD~~~~~lYw~D~~~~~I~~   94 (109)
                      +..|.|+++| .++.||.+|.+.++|..
T Consensus         1 f~~P~gvav~-~~g~i~VaD~~n~rV~v   27 (28)
T PF01436_consen    1 FNYPHGVAVD-SDGNIYVADSGNHRVQV   27 (28)
T ss_dssp             BSSEEEEEEE-TTSEEEEEECCCTEEEE
T ss_pred             CcCCcEEEEe-CCCCEEEEECCCCEEEE
Confidence            3589999999 89999999999999875

For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.

>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins

Probab=97.89  E-value=4.5e-05  Score=35.80  Aligned_cols=27  Identities=11%  Similarity=0.047  Sum_probs=23.2

Q ss_pred             CCCcceEEeeCCCCeEEEEecCCCCCCCeEEE
Q psy959           20 IPGRRHFMPPIRLRTLYYTDWGRFGTAGKILR   51 (109)
Q Consensus        20 l~~p~~iavd~~~g~lywsd~~~~~~~~~I~~   51 (109)
                      |..|.|||+|+ +|.||.+|.+    +.+|.+
T Consensus         1 f~~P~gvav~~-~g~i~VaD~~----n~rV~v   27 (28)
T PF01436_consen    1 FNYPHGVAVDS-DGNIYVADSG----NHRVQV   27 (28)
T ss_dssp             BSSEEEEEEET-TSEEEEEECC----CTEEEE
T ss_pred             CcCCcEEEEeC-CCCEEEEECC----CCEEEE
Confidence            46899999995 9999999987    688765

For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.82  E-value=0.00017  Score=50.59  Aligned_cols=63  Identities=21%  Similarity=0.224  Sum_probs=42.0

Q ss_pred             CCCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCCcEEEEeC--------CCCCceeEEEecCCCeEEEEeC
Q psy959           20 IPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEK--------DLSQPSGLAIDFDDEMLYWTDA   87 (109)
Q Consensus        20 l~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~~~~l~~~--------~~~~p~glaiD~~~~~lYw~D~   87 (109)
                      +..|.++++||.+|+||.-...    .+.+...+.+|.....+.-.        .+.+|.|||+|+ +++||.+..
T Consensus       170 ~~d~S~l~~~p~t~~lliLS~e----s~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~-~G~LYIvsE  240 (248)
T PF06977_consen  170 VRDLSGLSYDPRTGHLLILSDE----SRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDP-DGNLYIVSE  240 (248)
T ss_dssp             SS---EEEEETTTTEEEEEETT----TTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-T-T--EEEEET
T ss_pred             eccccceEEcCCCCeEEEEECC----CCeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECC-CCCEEEEcC
Confidence            5679999999999999999776    68999999999876555332        357899999996 679999876

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=97.80  E-value=0.0004  Score=50.51  Aligned_cols=74  Identities=15%  Similarity=0.163  Sum_probs=57.7

Q ss_pred             CcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCC-cEEE---EeCCCCCceeEEEecCCCeEEEEeCCCCeEEEEeC
Q psy959           22 GRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSL-KKVI---IEKDLSQPSGLAIDFDDEMLYWTDAVREKIERSDL   97 (109)
Q Consensus        22 ~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~-~~~l---~~~~~~~p~glaiD~~~~~lYw~D~~~~~I~~~~~   97 (109)
                      .|.+|++.|..++||.++.+    ...|....+|+.. ....   +......|+++++++..++||.+....+.|...++
T Consensus       246 ~~~~i~ispdg~~lyvsnr~----~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~  321 (345)
T PF10282_consen  246 APAEIAISPDGRFLYVSNRG----SNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDI  321 (345)
T ss_dssp             SEEEEEE-TTSSEEEEEECT----TTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEE
T ss_pred             CceeEEEecCCCEEEEEecc----CCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEE
Confidence            68899999988899999988    6889999986442 2222   22345679999999999999999999999998887


Q ss_pred             CC
Q psy959           98 AG   99 (109)
Q Consensus        98 dG   99 (109)
                      |.
T Consensus       322 d~  323 (345)
T PF10282_consen  322 DP  323 (345)
T ss_dssp             ET
T ss_pred             eC
Confidence            64

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG4659|consensus

Probab=97.70  E-value=0.0002  Score=59.58  Aligned_cols=75  Identities=21%  Similarity=0.232  Sum_probs=55.9

Q ss_pred             CCCCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCCcEEEEe------------------CCCCCceeEEEecCCC
Q psy959           19 AIPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIE------------------KDLSQPSGLAIDFDDE   80 (109)
Q Consensus        19 ~l~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~~~~l~~------------------~~~~~p~glaiD~~~~   80 (109)
                      .|..|+|||+|. .|+|||+|.      ..|...+.+|--...+-+                  -.+.||..|||||..+
T Consensus       473 ~L~~PkGIa~dk-~g~lYfaD~------t~IR~iD~~giIstlig~~~~~~~p~~C~~~~kl~~~~leWPT~LaV~Pmdn  545 (1899)
T KOG4659|consen  473 QLIFPKGIAFDK-MGNLYFADG------TRIRVIDTTGIISTLIGTTPDQHPPRTCAQITKLVDLQLEWPTSLAVDPMDN  545 (1899)
T ss_pred             eeccCCceeEcc-CCcEEEecc------cEEEEeccCceEEEeccCCCCccCccccccccchhheeeecccceeecCCCC
Confidence            378999999998 999999995      467776666644333221                  1367999999999999


Q ss_pred             eEEEEeCCCCeEEEEeCCCCCe
Q psy959           81 MLYWTDAVREKIERSDLAGNNR  102 (109)
Q Consensus        81 ~lYw~D~~~~~I~~~~~dG~~~  102 (109)
                      .||..|.  +.|.++.-++.-+
T Consensus       546 sl~Vld~--nvvlrit~~~rV~  565 (1899)
T KOG4659|consen  546 SLLVLDT--NVVLRITVVHRVR  565 (1899)
T ss_pred             eEEEeec--ceEEEEccCccEE
Confidence            9999996  5566666665433

>KOG1520|consensus

Probab=97.62  E-value=0.00012  Score=53.88  Aligned_cols=81  Identities=21%  Similarity=0.326  Sum_probs=61.7

Q ss_pred             CCCcceEEeeCCCCeEEEEecCCC------------C-CCCeEEEEEcCCCCcEEEEeCCCCCceeEEEecCCCeEEEEe
Q psy959           20 IPGRRHFMPPIRLRTLYYTDWGRF------------G-TAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTD   86 (109)
Q Consensus        20 l~~p~~iavd~~~g~lywsd~~~~------------~-~~~~I~~~~~dG~~~~~l~~~~~~~p~glaiD~~~~~lYw~D   86 (109)
                      +....++.||+ +|.+||||....            + ..+++.+.+..-+..++|. +++.-|+|+++.+....+-.|+
T Consensus       160 ~kf~N~ldI~~-~g~vyFTDSSsk~~~rd~~~a~l~g~~~GRl~~YD~~tK~~~VLl-d~L~F~NGlaLS~d~sfvl~~E  237 (376)
T KOG1520|consen  160 FKFLNDLDIDP-EGVVYFTDSSSKYDRRDFVFAALEGDPTGRLFRYDPSTKVTKVLL-DGLYFPNGLALSPDGSFVLVAE  237 (376)
T ss_pred             eeecCceeEcC-CCeEEEeccccccchhheEEeeecCCCccceEEecCcccchhhhh-hcccccccccCCCCCCEEEEEe
Confidence            34567899999 999999997642            1 2344444444333444444 4799999999999999999999


Q ss_pred             CCCCeEEEEeCCCCCe
Q psy959           87 AVREKIERSDLAGNNR  102 (109)
Q Consensus        87 ~~~~~I~~~~~dG~~~  102 (109)
                      ....+|.+.-+.|.+.
T Consensus       238 t~~~ri~rywi~g~k~  253 (376)
T KOG1520|consen  238 TTTARIKRYWIKGPKA  253 (376)
T ss_pred             eccceeeeeEecCCcc
Confidence            9999999999998876

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=97.46  E-value=0.0079  Score=43.07  Aligned_cols=77  Identities=12%  Similarity=0.138  Sum_probs=59.0

Q ss_pred             cCCCCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCCc------EEEEeCCCCCceeEEEecCCCeEEEEeCCCCe
Q psy959           18 QAIPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLK------KVIIEKDLSQPSGLAIDFDDEMLYWTDAVREK   91 (109)
Q Consensus        18 ~~l~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~~------~~l~~~~~~~p~glaiD~~~~~lYw~D~~~~~   91 (109)
                      .....|.+++++|..+++|.++.+    ...|...+++....      ..+....-..|+++++++..+++|.++...+.
T Consensus       123 ~~~~~~~~~~~~p~g~~l~v~~~~----~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~  198 (330)
T PRK11028        123 EGLEGCHSANIDPDNRTLWVPCLK----EDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSS  198 (330)
T ss_pred             cCCCcccEeEeCCCCCEEEEeeCC----CCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCE
Confidence            345678999999988899999987    68899998864221      11111224579999999999999999998888


Q ss_pred             EEEEeCC
Q psy959           92 IERSDLA   98 (109)
Q Consensus        92 I~~~~~d   98 (109)
                      |...+++
T Consensus       199 v~v~~~~  205 (330)
T PRK11028        199 VDVWQLK  205 (330)
T ss_pred             EEEEEEe
Confidence            8888876

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=97.44  E-value=0.0065  Score=44.21  Aligned_cols=75  Identities=19%  Similarity=0.187  Sum_probs=59.0

Q ss_pred             CCCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCC--c---EEEEeCCCCCceeEEEecCCCeEEEEeCCCCeEEE
Q psy959           20 IPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSL--K---KVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIER   94 (109)
Q Consensus        20 l~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~--~---~~l~~~~~~~p~glaiD~~~~~lYw~D~~~~~I~~   94 (109)
                      -.+|+++.++|..+++|.+|.+    ..+|....++...  -   ..+....-.-|+.|++++..+++|.+......|..
T Consensus       143 ~~h~H~v~~~pdg~~v~v~dlG----~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v  218 (345)
T PF10282_consen  143 GPHPHQVVFSPDGRFVYVPDLG----ADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSV  218 (345)
T ss_dssp             STCEEEEEE-TTSSEEEEEETT----TTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEE
T ss_pred             cccceeEEECCCCCEEEEEecC----CCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEE
Confidence            4678899999988999999998    6899999997554  1   22222445679999999999999999999999998


Q ss_pred             EeCC
Q psy959           95 SDLA   98 (109)
Q Consensus        95 ~~~d   98 (109)
                      .+++
T Consensus       219 ~~~~  222 (345)
T PF10282_consen  219 FDYD  222 (345)
T ss_dssp             EEEE
T ss_pred             Eeec
Confidence            8888

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG1520|consensus

Probab=97.35  E-value=0.00071  Score=49.87  Aligned_cols=63  Identities=19%  Similarity=0.215  Sum_probs=52.2

Q ss_pred             CCCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCCcEEEEeC----CCCCceeEEEecCCCeEEEEeCC
Q psy959           20 IPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEK----DLSQPSGLAIDFDDEMLYWTDAV   88 (109)
Q Consensus        20 l~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~~~~l~~~----~~~~p~glaiD~~~~~lYw~D~~   88 (109)
                      ...|-||+.+..+|.||.+|..     -.+...+..|...+.+...    .+...+++.||+ ++.+||+|+.
T Consensus       114 CGRPLGl~f~~~ggdL~VaDAY-----lGL~~V~p~g~~a~~l~~~~~G~~~kf~N~ldI~~-~g~vyFTDSS  180 (376)
T KOG1520|consen  114 CGRPLGIRFDKKGGDLYVADAY-----LGLLKVGPEGGLAELLADEAEGKPFKFLNDLDIDP-EGVVYFTDSS  180 (376)
T ss_pred             cCCcceEEeccCCCeEEEEecc-----eeeEEECCCCCcceeccccccCeeeeecCceeEcC-CCeEEEeccc
Confidence            4789999999999999999986     6788888888776665543    245678899998 9999999985

>KOG4499|consensus

Probab=97.30  E-value=0.005  Score=43.26  Aligned_cols=85  Identities=18%  Similarity=0.195  Sum_probs=65.4

Q ss_pred             CCCccEEEecCCCCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcC-----CCCcEEEEeC------CCCCceeEEEec
Q psy959            9 LKTHRSLLLQAIPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMA-----GSLKKVIIEK------DLSQPSGLAIDF   77 (109)
Q Consensus         9 ~G~~~~~li~~l~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~d-----G~~~~~l~~~------~~~~p~glaiD~   77 (109)
                      .|.+.+.+...+.-|+||+-|.....+|++|..    +-.|...+.|     -++|++|+.-      .-..|-|++||-
T Consensus       146 ~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsl----n~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~  221 (310)
T KOG4499|consen  146 AGHQVELIWNCVGISNGLAWDSDAKKFYYIDSL----NYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDT  221 (310)
T ss_pred             cCCCceeeehhccCCccccccccCcEEEEEccC----ceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEcc
Confidence            345556666778889999999999999999987    5777555533     2568887751      244699999995


Q ss_pred             CCCeEEEEeCCCCeEEEEeCC
Q psy959           78 DDEMLYWTDAVREKIERSDLA   98 (109)
Q Consensus        78 ~~~~lYw~D~~~~~I~~~~~d   98 (109)
                       .++||.+-+..++|.+++..
T Consensus       222 -eG~L~Va~~ng~~V~~~dp~  241 (310)
T KOG4499|consen  222 -EGNLYVATFNGGTVQKVDPT  241 (310)
T ss_pred             -CCcEEEEEecCcEEEEECCC
Confidence             88999999988888888765

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=97.29  E-value=0.0025  Score=45.55  Aligned_cols=64  Identities=22%  Similarity=0.195  Sum_probs=47.7

Q ss_pred             CCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCC----CCcEEEEe-CC-CCCceeEEEec-CCCeEEEEeCCC
Q psy959           21 PGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAG----SLKKVIIE-KD-LSQPSGLAIDF-DDEMLYWTDAVR   89 (109)
Q Consensus        21 ~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG----~~~~~l~~-~~-~~~p~glaiD~-~~~~lYw~D~~~   89 (109)
                      ....|+++|+ +|.||+++..    ...|.+.+.++    .+.+++.. .. +.+|.+++++. ..+.||......
T Consensus       186 ~~s~g~~~D~-~G~ly~~~~~----~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~snrl  256 (287)
T PF03022_consen  186 SQSDGMAIDP-NGNLYFTDVE----QNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLSNRL  256 (287)
T ss_dssp             -SECEEEEET-TTEEEEEECC----CTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE-S-
T ss_pred             CCCceEEECC-CCcEEEecCC----CCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEECcc
Confidence            4557899999 9999999998    69999999998    34555555 33 89999999995 357888887643

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.29  E-value=0.0064  Score=44.99  Aligned_cols=79  Identities=19%  Similarity=0.218  Sum_probs=59.4

Q ss_pred             CcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCCcEEEEeCCCCCceeEEEecCCCeEEEEeCCCCeEEEEeCCCCC
Q psy959           22 GRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIERSDLAGNN  101 (109)
Q Consensus        22 ~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glaiD~~~~~lYw~D~~~~~I~~~~~dG~~  101 (109)
                      .|.++++++..+++|.++...  .+..|.+.+-.......-.. .-..|.++++|+...++|-++.....|...+..+..
T Consensus       117 ~P~~~~~~~~~~~vYV~n~~~--~~~~vsvid~~t~~~~~~~~-vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~  193 (381)
T COG3391         117 GPVGLAVDPDGKYVYVANAGN--GNNTVSVIDAATNKVTATIP-VGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNS  193 (381)
T ss_pred             CCceEEECCCCCEEEEEeccc--CCceEEEEeCCCCeEEEEEe-cCCCcceEEECCCCCeEEEEecCCCeEEEEeCCCcc
Confidence            899999999999999999851  15788777765333222222 123689999999999999999888888888876654


Q ss_pred             eE
Q psy959          102 RE  103 (109)
Q Consensus       102 ~~  103 (109)
                      ..
T Consensus       194 v~  195 (381)
T COG3391         194 VV  195 (381)
T ss_pred             ee
Confidence            43

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=97.27  E-value=0.0027  Score=46.19  Aligned_cols=75  Identities=20%  Similarity=0.205  Sum_probs=53.8

Q ss_pred             CCCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCCcEEEEeC------CCCCceeEEEecC---CCeEEEEeCCC-
Q psy959           20 IPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEK------DLSQPSGLAIDFD---DEMLYWTDAVR-   89 (109)
Q Consensus        20 l~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~~~~l~~~------~~~~p~glaiD~~---~~~lYw~D~~~-   89 (109)
                      |+.|++|++.| .|.||+++..     ++|.+...+|.....+...      ...-+.|||+|+.   ++.||.+-... 
T Consensus         1 L~~P~~~a~~p-dG~l~v~e~~-----G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~   74 (331)
T PF07995_consen    1 LNNPRSMAFLP-DGRLLVAERS-----GRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNAD   74 (331)
T ss_dssp             ESSEEEEEEET-TSCEEEEETT-----TEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-
T ss_pred             CCCceEEEEeC-CCcEEEEeCC-----ceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEccc
Confidence            57899999999 6999999873     8999999888874443331      2345788999993   67888776632 


Q ss_pred             -------CeEEEEeCCCC
Q psy959           90 -------EKIERSDLAGN  100 (109)
Q Consensus        90 -------~~I~~~~~dG~  100 (109)
                             .+|.+..++..
T Consensus        75 ~~~~~~~~~v~r~~~~~~   92 (331)
T PF07995_consen   75 EDGGDNDNRVVRFTLSDG   92 (331)
T ss_dssp             TSSSSEEEEEEEEEEETT
T ss_pred             CCCCCcceeeEEEeccCC
Confidence                   47888877654

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides

Probab=97.22  E-value=0.0015  Score=38.75  Aligned_cols=42  Identities=10%  Similarity=-0.088  Sum_probs=35.5

Q ss_pred             CCCCccEEEecCCCCcceEEeeCCCCeEEEEecCCCCCCCeEEEEE
Q psy959            8 LLKTHRSLLLQAIPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTT   53 (109)
Q Consensus         8 l~G~~~~~li~~l~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~   53 (109)
                      -+|+..+++.+++..|.||+++|...+||.++..    ...|.+..
T Consensus        41 yd~~~~~~va~g~~~aNGI~~s~~~k~lyVa~~~----~~~I~vy~   82 (86)
T PF01731_consen   41 YDGKEVKVVASGFSFANGIAISPDKKYLYVASSL----AHSIHVYK   82 (86)
T ss_pred             EeCCEeEEeeccCCCCceEEEcCCCCEEEEEecc----CCeEEEEE
Confidence            4677778888999999999999999999999987    46776654

The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=97.19  E-value=0.019  Score=43.68  Aligned_cols=82  Identities=23%  Similarity=0.271  Sum_probs=57.9

Q ss_pred             cEEEecCCCCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCCcEEEE------e-CCCCCceeEEEecC------C
Q psy959           13 RSLLLQAIPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVII------E-KDLSQPSGLAIDFD------D   79 (109)
Q Consensus        13 ~~~li~~l~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~~~~l~------~-~~~~~p~glaiD~~------~   79 (109)
                      .+++.++|..|++|++.| .|.||.+...    .++|.+...++.....+.      . ....-+.|||+||.      +
T Consensus        22 ~~~va~GL~~Pw~maflP-DG~llVtER~----~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n   96 (454)
T TIGR03606        22 KKVLLSGLNKPWALLWGP-DNQLWVTERA----TGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGN   96 (454)
T ss_pred             EEEEECCCCCceEEEEcC-CCeEEEEEec----CCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCC
Confidence            345568999999999999 7899999874    478988876544333221      1 12345789999855      4


Q ss_pred             CeEEEEeC---------CCCeEEEEeCCC
Q psy959           80 EMLYWTDA---------VREKIERSDLAG   99 (109)
Q Consensus        80 ~~lYw~D~---------~~~~I~~~~~dG   99 (109)
                      +.||++-.         ...+|.+..++.
T Consensus        97 ~~lYvsyt~~~~~~~~~~~~~I~R~~l~~  125 (454)
T TIGR03606        97 PYVYISYTYKNGDKELPNHTKIVRYTYDK  125 (454)
T ss_pred             cEEEEEEeccCCCCCccCCcEEEEEEecC
Confidence            67888842         246899988863

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=97.19  E-value=0.0068  Score=43.41  Aligned_cols=75  Identities=17%  Similarity=0.160  Sum_probs=57.2

Q ss_pred             CCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcC--CCCcEEEEe-CCCCCceeEEEecCCCeEEEEeCCCCeEEEEeC
Q psy959           21 PGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMA--GSLKKVIIE-KDLSQPSGLAIDFDDEMLYWTDAVREKIERSDL   97 (109)
Q Consensus        21 ~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~d--G~~~~~l~~-~~~~~p~glaiD~~~~~lYw~D~~~~~I~~~~~   97 (109)
                      ..|.+++++|..+.+|.+...    ...|...+++  |...+.+.. .....|.++++++.++++|.++.+.++|...++
T Consensus        80 ~~p~~i~~~~~g~~l~v~~~~----~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~  155 (330)
T PRK11028         80 GSPTHISTDHQGRFLFSASYN----ANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTL  155 (330)
T ss_pred             CCceEEEECCCCCEEEEEEcC----CCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEE
Confidence            578999999988889988765    4777777664  433222221 234679999999999999999999999998888


Q ss_pred             CC
Q psy959           98 AG   99 (109)
Q Consensus        98 dG   99 (109)
                      +.
T Consensus       156 ~~  157 (330)
T PRK11028        156 SD  157 (330)
T ss_pred             CC
Confidence            64

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=97.19  E-value=0.0016  Score=47.31  Aligned_cols=69  Identities=26%  Similarity=0.218  Sum_probs=49.6

Q ss_pred             CcceEEeeCCCCeEEEEecCCC---------CCCCeEEEEEcCCCC------------cEEEEeCCCCCceeEEEecCCC
Q psy959           22 GRRHFMPPIRLRTLYYTDWGRF---------GTAGKILRTTMAGSL------------KKVIIEKDLSQPSGLAIDFDDE   80 (109)
Q Consensus        22 ~p~~iavd~~~g~lywsd~~~~---------~~~~~I~~~~~dG~~------------~~~l~~~~~~~p~glaiD~~~~   80 (109)
                      ...+|+++| .|+||++-....         ...++|.|.+.||+.            ...++..++.+|.+|++|+.++
T Consensus       115 ~g~~l~fgp-DG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg  193 (331)
T PF07995_consen  115 NGGGLAFGP-DGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSIPADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTG  193 (331)
T ss_dssp             -EEEEEE-T-TSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB-TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTT
T ss_pred             CCccccCCC-CCcEEEEeCCCCCcccccccccccceEEEecccCcCCCCCccccCCCceEEEEEeCCCccccEEEECCCC
Confidence            345699999 889999953321         136899999999982            2345667899999999999999


Q ss_pred             eEEEEeCCCCe
Q psy959           81 MLYWTDAVREK   91 (109)
Q Consensus        81 ~lYw~D~~~~~   91 (109)
                      .||.+|.+...
T Consensus       194 ~l~~~d~G~~~  204 (331)
T PF07995_consen  194 RLWAADNGPDG  204 (331)
T ss_dssp             EEEEEEE-SSS
T ss_pred             cEEEEccCCCC
Confidence            99999987543

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=97.17  E-value=0.0014  Score=39.09  Aligned_cols=47  Identities=17%  Similarity=0.124  Sum_probs=39.3

Q ss_pred             CCCCCccEEEecCCCCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCC
Q psy959            7 DLLKTHRSLLLQAIPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGS   57 (109)
Q Consensus         7 ~l~G~~~~~li~~l~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~   57 (109)
                      |+..+.-++|+++|..|+|||+.+....+++++..    ..+|.|..+.|.
T Consensus        43 dp~t~~~~vl~~~L~fpNGVals~d~~~vlv~Et~----~~Ri~rywl~Gp   89 (89)
T PF03088_consen   43 DPSTKETTVLLDGLYFPNGVALSPDESFVLVAETG----RYRILRYWLKGP   89 (89)
T ss_dssp             ETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEEGG----GTEEEEEESSST
T ss_pred             ECCCCeEEEehhCCCccCeEEEcCCCCEEEEEecc----CceEEEEEEeCC
Confidence            44445567888999999999999988899999998    699999999873

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides

Probab=97.13  E-value=0.0028  Score=37.59  Aligned_cols=43  Identities=26%  Similarity=0.350  Sum_probs=33.8

Q ss_pred             cCCCCcEEEEeCCCCCceeEEEecCCCeEEEEeCCCCeEEEEeC
Q psy959           54 MAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIERSDL   97 (109)
Q Consensus        54 ~dG~~~~~l~~~~~~~p~glaiD~~~~~lYw~D~~~~~I~~~~~   97 (109)
                      .||+..++ +..++..|+||++++.++.||.++...+.|.....
T Consensus        41 yd~~~~~~-va~g~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~   83 (86)
T PF01731_consen   41 YDGKEVKV-VASGFSFANGIAISPDKKYLYVASSLAHSIHVYKR   83 (86)
T ss_pred             EeCCEeEE-eeccCCCCceEEEcCCCCEEEEEeccCCeEEEEEe
Confidence            34444444 34578999999999999999999999888877654

The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity

>KOG4659|consensus

Probab=96.94  E-value=0.007  Score=50.89  Aligned_cols=91  Identities=19%  Similarity=0.147  Sum_probs=69.9

Q ss_pred             eeeecCCCCCccEEEecC---------CCCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCCcEEEEe--CCCCCc
Q psy959            2 VSTDKDLLKTHRSLLLQA---------IPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIE--KDLSQP   70 (109)
Q Consensus         2 ~~~~~~l~G~~~~~li~~---------l~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~~~~l~~--~~~~~p   70 (109)
                      +++-+-.||-.|.+=+.+         |-.|.++|.-| .|.||.-|.      .-|.|...||.-+.++--  .+...-
T Consensus       337 vitt~mgdG~qR~veC~~C~G~a~~~~L~aPvala~a~-DGSl~VGDf------NyIRRI~~dg~v~tIl~L~~t~~sh~  409 (1899)
T KOG4659|consen  337 VITTAMGDGHQRDVECPKCEGKADSISLFAPVALAYAP-DGSLIVGDF------NYIRRISQDGQVSTILTLGLTDTSHS  409 (1899)
T ss_pred             eEEEeccCcccccccCCCCCCccccceeeceeeEEEcC-CCcEEEccc------hheeeecCCCceEEEEEecCCCccce
Confidence            355566677776655522         55799999998 999999885      589999999988776643  233445


Q ss_pred             eeEEEecCCCeEEEEeCCCCeEEEEe-CCC
Q psy959           71 SGLAIDFDDEMLYWTDAVREKIERSD-LAG   99 (109)
Q Consensus        71 ~glaiD~~~~~lYw~D~~~~~I~~~~-~dG   99 (109)
                      .-||+||..+.||.+|...++|.+++ +.+
T Consensus       410 Yy~AvsPvdgtlyvSdp~s~qv~rv~sl~~  439 (1899)
T KOG4659|consen  410 YYIAVSPVDGTLYVSDPLSKQVWRVSSLEP  439 (1899)
T ss_pred             eEEEecCcCceEEecCCCcceEEEeccCCc
Confidence            57999999999999999999998885 554

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=96.93  E-value=0.012  Score=44.78  Aligned_cols=75  Identities=27%  Similarity=0.317  Sum_probs=55.1

Q ss_pred             cEEEecCCC-----CcceEEeeCCCCeEEEEecCCC----------------------------CCCCeEEEEEcCCCC-
Q psy959           13 RSLLLQAIP-----GRRHFMPPIRLRTLYYTDWGRF----------------------------GTAGKILRTTMAGSL-   58 (109)
Q Consensus        13 ~~~li~~l~-----~p~~iavd~~~g~lywsd~~~~----------------------------~~~~~I~~~~~dG~~-   58 (109)
                      .++|++.+.     .-..|+++| .|+||++-....                            ...++|.|.+.||+. 
T Consensus       133 ~~~Il~~lP~~~~H~GgrI~FgP-DG~LYVs~GD~g~~~~~n~~~~~~aQ~~~~~~~~~~~d~~~~~GkILRin~DGsiP  211 (454)
T TIGR03606       133 PVDLLAGLPAGNDHNGGRLVFGP-DGKIYYTIGEQGRNQGANFFLPNQAQHTPTQQELNGKDYHAYMGKVLRLNLDGSIP  211 (454)
T ss_pred             ceEEEecCCCCCCcCCceEEECC-CCcEEEEECCCCCCCcccccCcchhccccccccccccCcccCceEEEEEcCCCCCC
Confidence            455665442     234689999 789999743320                            013589999999973 


Q ss_pred             ---------cEEEEeCCCCCceeEEEecCCCeEEEEeCCC
Q psy959           59 ---------KKVIIEKDLSQPSGLAIDFDDEMLYWTDAVR   89 (109)
Q Consensus        59 ---------~~~l~~~~~~~p~glaiD~~~~~lYw~D~~~   89 (109)
                               +..|...++.+|.||++|+ ++.||.+|.+.
T Consensus       212 ~dNPf~~g~~~eIyA~G~RNp~Gla~dp-~G~Lw~~e~Gp  250 (454)
T TIGR03606       212 KDNPSINGVVSHIFTYGHRNPQGLAFTP-DGTLYASEQGP  250 (454)
T ss_pred             CCCCccCCCcceEEEEeccccceeEECC-CCCEEEEecCC
Confidence                     3457777899999999999 79999999864

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=96.72  E-value=0.063  Score=37.77  Aligned_cols=80  Identities=14%  Similarity=0.033  Sum_probs=52.3

Q ss_pred             cceEEeeCCCCeEEEEecCCCCCCCeEEEEEc--CCCCcEEEEe-------CCCCCceeEEEecCCCeEEEEeCCCCeEE
Q psy959           23 RRHFMPPIRLRTLYYTDWGRFGTAGKILRTTM--AGSLKKVIIE-------KDLSQPSGLAIDFDDEMLYWTDAVREKIE   93 (109)
Q Consensus        23 p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~--dG~~~~~l~~-------~~~~~p~glaiD~~~~~lYw~D~~~~~I~   93 (109)
                      ..|||.|+.++.+|...-..   ...|+....  .+....+...       ..+..|.+|++|+.+++||.......+|-
T Consensus       120 ~EGla~D~~~~~L~v~kE~~---P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~  196 (248)
T PF06977_consen  120 FEGLAYDPKTNRLFVAKERK---PKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLL  196 (248)
T ss_dssp             -EEEEEETTTTEEEEEEESS---SEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEE
T ss_pred             eEEEEEcCCCCEEEEEeCCC---ChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEE
Confidence            57999999999999886542   356777776  2223222222       13567999999999999999999999999


Q ss_pred             EEeCCCCCeEEE
Q psy959           94 RSDLAGNNREAL  105 (109)
Q Consensus        94 ~~~~dG~~~~~l  105 (109)
                      ..+.+|.-...+
T Consensus       197 ~~d~~G~~~~~~  208 (248)
T PF06977_consen  197 ELDRQGRVVSSL  208 (248)
T ss_dssp             EE-TT--EEEEE
T ss_pred             EECCCCCEEEEE
Confidence            999888755443

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=96.39  E-value=0.074  Score=39.39  Aligned_cols=73  Identities=19%  Similarity=0.108  Sum_probs=55.7

Q ss_pred             CCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCCcEEEEeCCCCCceeEEEecCCCeEEEEeCC--CCeEEEEeCC
Q psy959           21 PGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAV--REKIERSDLA   98 (109)
Q Consensus        21 ~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glaiD~~~~~lYw~D~~--~~~I~~~~~d   98 (109)
                      ..|.++++.+...++|.++..    ...|.+.+.+..........+ ..|.++++|+..+.+|.++.+  ...|...+-.
T Consensus        74 ~~p~~i~v~~~~~~vyv~~~~----~~~v~vid~~~~~~~~~~~vG-~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~  148 (381)
T COG3391          74 VYPAGVAVNPAGNKVYVTTGD----SNTVSVIDTATNTVLGSIPVG-LGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAA  148 (381)
T ss_pred             ccccceeeCCCCCeEEEecCC----CCeEEEEcCcccceeeEeeec-cCCceEEECCCCCEEEEEecccCCceEEEEeCC
Confidence            668899999988899999976    578888885544433333222 289999999999999999994  5677666654

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=96.18  E-value=0.12  Score=37.99  Aligned_cols=77  Identities=12%  Similarity=0.078  Sum_probs=57.8

Q ss_pred             CCCCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCC--cEEEEe--------CCCCCceeEEEecCCCeEEEEeCC
Q psy959           19 AIPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSL--KKVIIE--------KDLSQPSGLAIDFDDEMLYWTDAV   88 (109)
Q Consensus        19 ~l~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~--~~~l~~--------~~~~~p~glaiD~~~~~lYw~D~~   88 (109)
                      .-..||.|+.+|.....|...--    +++|.+...++..  .+.+..        .+-.+...|.|.+..+.||-++.+
T Consensus       189 ~G~GPRHi~FHpn~k~aY~v~EL----~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg  264 (346)
T COG2706         189 PGAGPRHIVFHPNGKYAYLVNEL----NSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRG  264 (346)
T ss_pred             CCCCcceEEEcCCCcEEEEEecc----CCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCC
Confidence            34689999999977788887755    6999999998742  222221        123456678999999999999999


Q ss_pred             CCeEEEEeCCC
Q psy959           89 REKIERSDLAG   99 (109)
Q Consensus        89 ~~~I~~~~~dG   99 (109)
                      ...|..+..|-
T Consensus       265 ~dsI~~f~V~~  275 (346)
T COG2706         265 HDSIAVFSVDP  275 (346)
T ss_pred             CCeEEEEEEcC
Confidence            98888877663

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=95.93  E-value=0.28  Score=35.12  Aligned_cols=81  Identities=31%  Similarity=0.316  Sum_probs=54.7

Q ss_pred             CcceEEeeC---CCCeEEEEecCCCCCCCeEEEEEc----CCCC---------cEEEEeCCCCCceeEEEecCCCeEEEE
Q psy959           22 GRRHFMPPI---RLRTLYYTDWGRFGTAGKILRTTM----AGSL---------KKVIIEKDLSQPSGLAIDFDDEMLYWT   85 (109)
Q Consensus        22 ~p~~iavd~---~~g~lywsd~~~~~~~~~I~~~~~----dG~~---------~~~l~~~~~~~p~glaiD~~~~~lYw~   85 (109)
                      ...|+++.|   ..+.|||....    ..++++...    |.+.         .+.+-.. ..+..|+++|. ++.||++
T Consensus       129 g~~gial~~~~~d~r~LYf~~ls----s~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k-~~~s~g~~~D~-~G~ly~~  202 (287)
T PF03022_consen  129 GIFGIALSPISPDGRWLYFHPLS----SRKLYRVPTSVLRDPSLSDAQALASQVQDLGDK-GSQSDGMAIDP-NGNLYFT  202 (287)
T ss_dssp             SEEEEEE-TTSTTS-EEEEEETT-----SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE----SECEEEEET-TTEEEEE
T ss_pred             CccccccCCCCCCccEEEEEeCC----CCcEEEEEHHHhhCccccccccccccceecccc-CCCCceEEECC-CCcEEEe
Confidence            456778866   34689999876    567888763    3332         1233221 24678999997 9999999


Q ss_pred             eCCCCeEEEEeCCC----CCeEEEEeC
Q psy959           86 DAVREKIERSDLAG----NNREALYLN  108 (109)
Q Consensus        86 D~~~~~I~~~~~dG----~~~~~l~~~  108 (109)
                      +.....|.+.+.++    .+.++|+.+
T Consensus       203 ~~~~~aI~~w~~~~~~~~~~~~~l~~d  229 (287)
T PF03022_consen  203 DVEQNAIGCWDPDGPYTPENFEILAQD  229 (287)
T ss_dssp             ECCCTEEEEEETTTSB-GCCEEEEEE-
T ss_pred             cCCCCeEEEEeCCCCcCccchheeEEc
Confidence            99999999999999    566666653

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]

Probab=95.83  E-value=0.034  Score=41.65  Aligned_cols=79  Identities=22%  Similarity=0.172  Sum_probs=52.9

Q ss_pred             ccEEEecCCC-----CcceEEeeCCCCeEEEEecCC-------C--CCCCeEEEE--------EcCCCCcEEEEeCCCCC
Q psy959           12 HRSLLLQAIP-----GRRHFMPPIRLRTLYYTDWGR-------F--GTAGKILRT--------TMAGSLKKVIIEKDLSQ   69 (109)
Q Consensus        12 ~~~~li~~l~-----~p~~iavd~~~g~lywsd~~~-------~--~~~~~I~~~--------~~dG~~~~~l~~~~~~~   69 (109)
                      ..++++..+.     .-..|+++| .|+||.+-...       .  +..++|.+.        +.++.+ ..+++.++.+
T Consensus       163 ~~~~i~~~lP~~~~H~g~~l~f~p-DG~Lyvs~G~~~~~~~aq~~~~~~Gk~~r~~~a~~~~~d~p~~~-~~i~s~G~RN  240 (399)
T COG2133         163 EPKVIFRGIPKGGHHFGGRLVFGP-DGKLYVTTGSNGDPALAQDNVSLAGKVLRIDRAGIIPADNPFPN-SEIWSYGHRN  240 (399)
T ss_pred             cccEEeecCCCCCCcCcccEEECC-CCcEEEEeCCCCCcccccCccccccceeeeccCcccccCCCCCC-cceEEeccCC
Confidence            3466666553     234699999 66999986443       1  123433343        334444 3455678999


Q ss_pred             ceeEEEecCCCeEEEEeCCCCeE
Q psy959           70 PSGLAIDFDDEMLYWTDAVREKI   92 (109)
Q Consensus        70 p~glaiD~~~~~lYw~D~~~~~I   92 (109)
                      |.||+.|+.++.||.+|.+...+
T Consensus       241 ~qGl~w~P~tg~Lw~~e~g~d~~  263 (399)
T COG2133         241 PQGLAWHPVTGALWTTEHGPDAL  263 (399)
T ss_pred             ccceeecCCCCcEEEEecCCCcc
Confidence            99999999999999999876433

>PRK04792 tolB translocation protein TolB; Provisional

Probab=95.79  E-value=0.59  Score=35.38  Aligned_cols=98  Identities=12%  Similarity=0.047  Sum_probs=63.1

Q ss_pred             cCCCCCccEEEecCCCCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCCcEEEEeCCCCCceeEEEecCCCeEEEE
Q psy959            6 KDLLKTHRSLLLQAIPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWT   85 (109)
Q Consensus         6 ~~l~G~~~~~li~~l~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glaiD~~~~~lYw~   85 (109)
                      ++.+|...+.+...-....+.+..|...+|+|+....  ....|+..++++...+.+.... ......+..|.+++|+++
T Consensus       203 ~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~--g~~~L~~~dl~tg~~~~lt~~~-g~~~~~~wSPDG~~La~~  279 (448)
T PRK04792        203 ADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFEN--RKAEIFVQDIYTQVREKVTSFP-GINGAPRFSPDGKKLALV  279 (448)
T ss_pred             EeCCCCCceEeecCCCcccCceECCCCCEEEEEEecC--CCcEEEEEECCCCCeEEecCCC-CCcCCeeECCCCCEEEEE
Confidence            4667776666554333334567788777888875432  1578999999877665554321 122356788888888886


Q ss_pred             eC--CCCeEEEEeCCCCCeEEEE
Q psy959           86 DA--VREKIERSDLAGNNREALY  106 (109)
Q Consensus        86 D~--~~~~I~~~~~dG~~~~~l~  106 (109)
                      ..  +...|+..++++...+.+.
T Consensus       280 ~~~~g~~~Iy~~dl~tg~~~~lt  302 (448)
T PRK04792        280 LSKDGQPEIYVVDIATKALTRIT  302 (448)
T ss_pred             EeCCCCeEEEEEECCCCCeEECc
Confidence            43  3457888888877655443

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=95.63  E-value=0.43  Score=32.70  Aligned_cols=76  Identities=13%  Similarity=-0.038  Sum_probs=53.7

Q ss_pred             CcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCCcEEEEeCCCCCceeEEEecCCCeEEEEeCCCCeEEEEeCCCCC
Q psy959           22 GRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIERSDLAGNN  101 (109)
Q Consensus        22 ~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glaiD~~~~~lYw~D~~~~~I~~~~~dG~~  101 (109)
                      .|.+++++|....+|.+...    ..+|...+++......... .-..|.++++++.+.+||-+....+.|...++++..
T Consensus       208 ~~~~i~~s~dg~~~~~~~~~----~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~  282 (300)
T TIGR03866       208 QPVGIKLTKDGKTAFVALGP----ANRVAVVDAKTYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALK  282 (300)
T ss_pred             CccceEECCCCCEEEEEcCC----CCeEEEEECCCCcEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCc
Confidence            35678899877777887654    4578877775333222222 234688999999999999887767789999988765


Q ss_pred             e
Q psy959          102 R  102 (109)
Q Consensus       102 ~  102 (109)
                      .
T Consensus       283 ~  283 (300)
T TIGR03866       283 V  283 (300)
T ss_pred             E
Confidence            4

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=95.39  E-value=0.54  Score=32.22  Aligned_cols=78  Identities=13%  Similarity=0.089  Sum_probs=53.2

Q ss_pred             ecCCCCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCCcEEEEeCCCCCceeEEEecCCCeEEEEeCCCCeEEEEe
Q psy959           17 LQAIPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIERSD   96 (109)
Q Consensus        17 i~~l~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glaiD~~~~~lYw~D~~~~~I~~~~   96 (109)
                      ++.-..|.+++++|..+.+|.+...    ...|...+.++......+. ....|..+++++..+.+|.+....+.|...+
T Consensus        27 ~~~~~~~~~l~~~~dg~~l~~~~~~----~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d  101 (300)
T TIGR03866        27 FPVGQRPRGITLSKDGKLLYVCASD----SDTIQVIDLATGEVIGTLP-SGPDPELFALHPNGKILYIANEDDNLVTVID  101 (300)
T ss_pred             EECCCCCCceEECCCCCEEEEEECC----CCeEEEEECCCCcEEEecc-CCCCccEEEECCCCCEEEEEcCCCCeEEEEE
Confidence            3434568899999976778888755    5788888876433222222 2345778899988888888766556777777


Q ss_pred             CCC
Q psy959           97 LAG   99 (109)
Q Consensus        97 ~dG   99 (109)
                      +..
T Consensus       102 ~~~  104 (300)
T TIGR03866       102 IET  104 (300)
T ss_pred             CCC
Confidence            654

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=95.11  E-value=0.57  Score=34.49  Aligned_cols=73  Identities=14%  Similarity=0.105  Sum_probs=55.3

Q ss_pred             ceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCC-CcEEEEe---CCCCCceeEEEecCCCeEEEEeCCCCeEEEEeCCC
Q psy959           24 RHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGS-LKKVIIE---KDLSQPSGLAIDFDDEMLYWTDAVREKIERSDLAG   99 (109)
Q Consensus        24 ~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~-~~~~l~~---~~~~~p~glaiD~~~~~lYw~D~~~~~I~~~~~dG   99 (109)
                      .+|.+.+..++||.+|.+    ...|.....|.. ....++.   .....|+++.+++..+.|+-+....+.|.....|.
T Consensus       247 aaIhis~dGrFLYasNRg----~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~  322 (346)
T COG2706         247 AAIHISPDGRFLYASNRG----HDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDK  322 (346)
T ss_pred             eEEEECCCCCEEEEecCC----CCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcC
Confidence            358889989999999988    467777776533 2233332   34556999999999999999998888888887775


Q ss_pred             C
Q psy959          100 N  100 (109)
Q Consensus       100 ~  100 (109)
                      .
T Consensus       323 ~  323 (346)
T COG2706         323 E  323 (346)
T ss_pred             C
Confidence            4

>PRK02889 tolB translocation protein TolB; Provisional

Probab=95.02  E-value=1.1  Score=33.65  Aligned_cols=98  Identities=13%  Similarity=0.005  Sum_probs=61.1

Q ss_pred             ecCCCCCccEEEecCCCCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCCcEEEEeCCCCCceeEEEecCCCeEEE
Q psy959            5 DKDLLKTHRSLLLQAIPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYW   84 (109)
Q Consensus         5 ~~~l~G~~~~~li~~l~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glaiD~~~~~lYw   84 (109)
                      .+|.+|...+.+...-..-.+.+..|....|+++....  ..+.|+..++++..++.+.... ......+..|..++|++
T Consensus       180 ~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~--~~~~I~~~dl~~g~~~~l~~~~-g~~~~~~~SPDG~~la~  256 (427)
T PRK02889        180 ISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFES--KKPVVYVHDLATGRRRVVANFK-GSNSAPAWSPDGRTLAV  256 (427)
T ss_pred             EECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccC--CCcEEEEEECCCCCEEEeecCC-CCccceEECCCCCEEEE
Confidence            45667776666653323334567778677887765432  2478999999866665554321 22345677788888877


Q ss_pred             EeC--CCCeEEEEeCCCCCeEEE
Q psy959           85 TDA--VREKIERSDLAGNNREAL  105 (109)
Q Consensus        85 ~D~--~~~~I~~~~~dG~~~~~l  105 (109)
                      +-.  +...|+.++.+|...+.+
T Consensus       257 ~~~~~g~~~Iy~~d~~~~~~~~l  279 (427)
T PRK02889        257 ALSRDGNSQIYTVNADGSGLRRL  279 (427)
T ss_pred             EEccCCCceEEEEECCCCCcEEC
Confidence            532  456788888877665544

>PRK00178 tolB translocation protein TolB; Provisional

Probab=94.93  E-value=1.1  Score=33.34  Aligned_cols=99  Identities=14%  Similarity=0.052  Sum_probs=61.7

Q ss_pred             ecCCCCCccEEEecCCCCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCCcEEEEeCCCCCceeEEEecCCCeEEE
Q psy959            5 DKDLLKTHRSLLLQAIPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYW   84 (109)
Q Consensus         5 ~~~l~G~~~~~li~~l~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glaiD~~~~~lYw   84 (109)
                      .++.+|...+.+...-......+..|....|+|+....  ..+.|++.++++...+.+.... ......+..|..++|++
T Consensus       183 ~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~--~~~~l~~~~l~~g~~~~l~~~~-g~~~~~~~SpDG~~la~  259 (430)
T PRK00178        183 RSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQ--KRPRIFVQNLDTGRREQITNFE-GLNGAPAWSPDGSKLAF  259 (430)
T ss_pred             EECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCC--CCCEEEEEECCCCCEEEccCCC-CCcCCeEECCCCCEEEE
Confidence            34666766655554333335567778677887765432  2578999999876666554321 12234677777888887


Q ss_pred             EeC--CCCeEEEEeCCCCCeEEEE
Q psy959           85 TDA--VREKIERSDLAGNNREALY  106 (109)
Q Consensus        85 ~D~--~~~~I~~~~~dG~~~~~l~  106 (109)
                      +-.  +...|+..++++...+.+.
T Consensus       260 ~~~~~g~~~Iy~~d~~~~~~~~lt  283 (430)
T PRK00178        260 VLSKDGNPEIYVMDLASRQLSRVT  283 (430)
T ss_pred             EEccCCCceEEEEECCCCCeEEcc
Confidence            643  3457888888877655443

>PRK04922 tolB translocation protein TolB; Provisional

Probab=94.90  E-value=1.2  Score=33.49  Aligned_cols=97  Identities=14%  Similarity=0.052  Sum_probs=59.9

Q ss_pred             cCCCCCccEEEecCCCCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCCcEEEEeCCCCCceeEEEecCCCeEEEE
Q psy959            6 KDLLKTHRSLLLQAIPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWT   85 (109)
Q Consensus         6 ~~l~G~~~~~li~~l~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glaiD~~~~~lYw~   85 (109)
                      .|.+|...+.+...-..-.+.+..|....|+|+....  ..+.|++.++++..++.+.... ......++.+.+++|+++
T Consensus       189 ~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~--~~~~l~~~dl~~g~~~~l~~~~-g~~~~~~~SpDG~~l~~~  265 (433)
T PRK04922        189 ADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFER--GRSAIYVQDLATGQRELVASFR-GINGAPSFSPDGRRLALT  265 (433)
T ss_pred             ECCCCCCceEeecCCCccccccCCCCCCEEEEEecCC--CCcEEEEEECCCCCEEEeccCC-CCccCceECCCCCEEEEE
Confidence            3455555555543222234556777677888876432  2578999999876666554321 122356788888888776


Q ss_pred             eC--CCCeEEEEeCCCCCeEEE
Q psy959           86 DA--VREKIERSDLAGNNREAL  105 (109)
Q Consensus        86 D~--~~~~I~~~~~dG~~~~~l  105 (109)
                      -.  +...|...++++...+.+
T Consensus       266 ~s~~g~~~Iy~~d~~~g~~~~l  287 (433)
T PRK04922        266 LSRDGNPEIYVMDLGSRQLTRL  287 (433)
T ss_pred             EeCCCCceEEEEECCCCCeEEC
Confidence            43  345788888887665544

>PRK01742 tolB translocation protein TolB; Provisional

Probab=94.69  E-value=1.3  Score=33.14  Aligned_cols=98  Identities=11%  Similarity=0.044  Sum_probs=62.3

Q ss_pred             cCCCCCccEEEecCCCCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCCcEEEEeCCCCCceeEEEecCCCeEEEE
Q psy959            6 KDLLKTHRSLLLQAIPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWT   85 (109)
Q Consensus         6 ~~l~G~~~~~li~~l~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glaiD~~~~~lYw~   85 (109)
                      +|.+|..++.+...-....+.+..|....|.|+....  ..+.|+..++++..++.+.... ......+..|.+++|+++
T Consensus       189 ~d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~--~~~~i~i~dl~tg~~~~l~~~~-g~~~~~~wSPDG~~La~~  265 (429)
T PRK01742        189 ADYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFEN--KKSQLVVHDLRSGARKVVASFR-GHNGAPAFSPDGSRLAFA  265 (429)
T ss_pred             ECCCCCCceEeccCCCccccceEcCCCCEEEEEEecC--CCcEEEEEeCCCCceEEEecCC-CccCceeECCCCCEEEEE
Confidence            4667777665544333446678888777887775432  1468999998766655554321 122356788888888887


Q ss_pred             eC--CCCeEEEEeCCCCCeEEEE
Q psy959           86 DA--VREKIERSDLAGNNREALY  106 (109)
Q Consensus        86 D~--~~~~I~~~~~dG~~~~~l~  106 (109)
                      -.  +...|+..+.++...+.+.
T Consensus       266 ~~~~g~~~Iy~~d~~~~~~~~lt  288 (429)
T PRK01742        266 SSKDGVLNIYVMGANGGTPSQLT  288 (429)
T ss_pred             EecCCcEEEEEEECCCCCeEeec
Confidence            43  3456888888876655543

>TIGR03032 conserved hypothetical protein TIGR03032

Probab=94.63  E-value=0.24  Score=36.25  Aligned_cols=63  Identities=13%  Similarity=0.108  Sum_probs=45.4

Q ss_pred             EEEecCCCCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcC-CCCcEEEEeCCCCCceeEEEecCCCeEEEEe
Q psy959           14 SLLLQAIPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMA-GSLKKVIIEKDLSQPSGLAIDFDDEMLYWTD   86 (109)
Q Consensus        14 ~~li~~l~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~d-G~~~~~l~~~~~~~p~glaiD~~~~~lYw~D   86 (109)
                      ++++++|..|.+--.+  .|+||++|++    .+.+.+.+.+ |....+..-  -..|+||+..  ++.+|..-
T Consensus       196 evl~~GLsmPhSPRWh--dgrLwvldsg----tGev~~vD~~~G~~e~Va~v--pG~~rGL~f~--G~llvVgm  259 (335)
T TIGR03032       196 EVVASGLSMPHSPRWY--QGKLWLLNSG----RGELGYVDPQAGKFQPVAFL--PGFTRGLAFA--GDFAFVGL  259 (335)
T ss_pred             CEEEcCccCCcCCcEe--CCeEEEEECC----CCEEEEEcCCCCcEEEEEEC--CCCCccccee--CCEEEEEe
Confidence            5666788888776544  7999999999    6999999997 655444322  2488998876  55555543

This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.52  E-value=0.27  Score=35.56  Aligned_cols=62  Identities=19%  Similarity=0.279  Sum_probs=47.4

Q ss_pred             CCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCCcEEEEe--------CCCCCceeEEEecCCCeEEEEeC
Q psy959           21 PGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIE--------KDLSQPSGLAIDFDDEMLYWTDA   87 (109)
Q Consensus        21 ~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~~~~l~~--------~~~~~p~glaiD~~~~~lYw~D~   87 (109)
                      ....|+..|+.++.|+.-...    ...+...+.+|..+..+.-        .++.+|.|+|.| ..+.||.+..
T Consensus       233 ~DvSgl~~~~~~~~LLVLS~E----Sr~l~Evd~~G~~~~~lsL~~g~~gL~~dipqaEGiamD-d~g~lYIvSE  302 (316)
T COG3204         233 LDVSGLEFNAITNSLLVLSDE----SRRLLEVDLSGEVIELLSLTKGNHGLSSDIPQAEGIAMD-DDGNLYIVSE  302 (316)
T ss_pred             eccccceecCCCCcEEEEecC----CceEEEEecCCCeeeeEEeccCCCCCcccCCCcceeEEC-CCCCEEEEec
Confidence            455678889989988877655    5888999999987655542        346789999999 6778888865

>PRK03629 tolB translocation protein TolB; Provisional

Probab=94.47  E-value=1.5  Score=32.90  Aligned_cols=99  Identities=11%  Similarity=-0.000  Sum_probs=64.2

Q ss_pred             ecCCCCCccEEEecCCCCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCCcEEEEeCCCCCceeEEEecCCCeEEE
Q psy959            5 DKDLLKTHRSLLLQAIPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYW   84 (109)
Q Consensus         5 ~~~l~G~~~~~li~~l~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glaiD~~~~~lYw   84 (109)
                      .+|.+|.+++.+...-....+.+..|....|.|+....  ....|+..++++...+.+.... ......+..|.+++|++
T Consensus       183 ~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~--g~~~i~i~dl~~G~~~~l~~~~-~~~~~~~~SPDG~~La~  259 (429)
T PRK03629        183 VSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFES--GRSALVIQTLANGAVRQVASFP-RHNGAPAFSPDGSKLAF  259 (429)
T ss_pred             EEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecC--CCcEEEEEECCCCCeEEccCCC-CCcCCeEECCCCCEEEE
Confidence            35667777777654333345677888666777664321  1578999999876665554321 12335688888999998


Q ss_pred             EeC--CCCeEEEEeCCCCCeEEEE
Q psy959           85 TDA--VREKIERSDLAGNNREALY  106 (109)
Q Consensus        85 ~D~--~~~~I~~~~~dG~~~~~l~  106 (109)
                      +..  +...|..+++++...+.+.
T Consensus       260 ~~~~~g~~~I~~~d~~tg~~~~lt  283 (429)
T PRK03629        260 ALSKTGSLNLYVMDLASGQIRQVT  283 (429)
T ss_pred             EEcCCCCcEEEEEECCCCCEEEcc
Confidence            744  3457888888876655554

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=94.31  E-value=0.81  Score=33.17  Aligned_cols=74  Identities=19%  Similarity=0.156  Sum_probs=53.2

Q ss_pred             ecCCCCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCCcEEEEeCCCCCceeEEEecCCCeEEEEeCCCCeEEEEe
Q psy959           17 LQAIPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIERSD   96 (109)
Q Consensus        17 i~~l~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glaiD~~~~~lYw~D~~~~~I~~~~   96 (109)
                      +.+-..|+.++.++ .|.++|++.+    .+.|-+.+......+..--..-..|+++.+++.. -.+.+|.+. .|.+.+
T Consensus        58 vp~G~ap~dvapap-dG~VWft~qg----~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg-~~Witd~~~-aI~R~d  130 (353)
T COG4257          58 VPNGSAPFDVAPAP-DGAVWFTAQG----TGAIGHLDPATGEVETYPLGSGASPHGIVVGPDG-SAWITDTGL-AIGRLD  130 (353)
T ss_pred             cCCCCCccccccCC-CCceEEecCc----cccceecCCCCCceEEEecCCCCCCceEEECCCC-CeeEecCcc-eeEEec
Confidence            34557889999999 9999999988    6888887764333333333456799999999654 567888876 555554


Q ss_pred             C
Q psy959           97 L   97 (109)
Q Consensus        97 ~   97 (109)
                      -
T Consensus       131 p  131 (353)
T COG4257         131 P  131 (353)
T ss_pred             C
Confidence            3

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=94.22  E-value=1.4  Score=32.73  Aligned_cols=76  Identities=11%  Similarity=-0.014  Sum_probs=51.0

Q ss_pred             Ccce---EEeeCCCCeEEEEecCC-----CCCCCeEEEEEcCCCCcEEEEeCCCCCceeEEEecCCC-eEEEEeCCCCeE
Q psy959           22 GRRH---FMPPIRLRTLYYTDWGR-----FGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDE-MLYWTDAVREKI   92 (109)
Q Consensus        22 ~p~~---iavd~~~g~lywsd~~~-----~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glaiD~~~~-~lYw~D~~~~~I   92 (109)
                      .|.+   +++++..+++|....+.     ..+...|.+.+.....+.--+. --..|.+|++.+..+ +||-+....+.|
T Consensus       246 rP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~-vG~~~~~iavS~Dgkp~lyvtn~~s~~V  324 (352)
T TIGR02658       246 RPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIE-LGHEIDSINVSQDAKPLLYALSTGDKTL  324 (352)
T ss_pred             CCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEe-CCCceeeEEECCCCCeEEEEeCCCCCcE
Confidence            3555   99999999999954221     1123577777764333222222 245899999999999 999999877777


Q ss_pred             EEEeCC
Q psy959           93 ERSDLA   98 (109)
Q Consensus        93 ~~~~~d   98 (109)
                      ...+..
T Consensus       325 sViD~~  330 (352)
T TIGR02658       325 YIFDAE  330 (352)
T ss_pred             EEEECc
Confidence            777654

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PRK05137 tolB translocation protein TolB; Provisional

Probab=94.05  E-value=1.9  Score=32.33  Aligned_cols=78  Identities=15%  Similarity=0.100  Sum_probs=53.5

Q ss_pred             eEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCCcEEEEeCCCCCceeEEEecCCCeEEEEeCC--C---CeEEEEeCCC
Q psy959           25 HFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAV--R---EKIERSDLAG   99 (109)
Q Consensus        25 ~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glaiD~~~~~lYw~D~~--~---~~I~~~~~dG   99 (109)
                      ..+..|..+.|+++....  ....|...+++|...+.+...  ......+..+.++.||++-..  .   ..+..++++|
T Consensus       338 ~~~~SpdG~~ia~~~~~~--~~~~i~~~d~~~~~~~~lt~~--~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g  413 (435)
T PRK05137        338 TPVWSPRGDLIAFTKQGG--GQFSIGVMKPDGSGERILTSG--FLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTG  413 (435)
T ss_pred             CeEECCCCCEEEEEEcCC--CceEEEEEECCCCceEeccCC--CCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCC
Confidence            355677677887776432  135788888887776555432  235567888888898887542  2   4799999999


Q ss_pred             CCeEEEE
Q psy959          100 NNREALY  106 (109)
Q Consensus       100 ~~~~~l~  106 (109)
                      ...+.+.
T Consensus       414 ~~~~~l~  420 (435)
T PRK05137        414 RNEREVP  420 (435)
T ss_pred             CceEEcc
Confidence            8877653

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=93.96  E-value=0.78  Score=33.28  Aligned_cols=84  Identities=17%  Similarity=0.218  Sum_probs=54.1

Q ss_pred             CCCcceEEeeCCCCeEEEE--ecCCCCCCCeEEEEEcCCC---C-cEE------EEeCC---C----CCceeEEEecCCC
Q psy959           20 IPGRRHFMPPIRLRTLYYT--DWGRFGTAGKILRTTMAGS---L-KKV------IIEKD---L----SQPSGLAIDFDDE   80 (109)
Q Consensus        20 l~~p~~iavd~~~g~lyws--d~~~~~~~~~I~~~~~dG~---~-~~~------l~~~~---~----~~p~glaiD~~~~   80 (109)
                      +..-.||+.++..+ .||+  |.+.+....+++...++..   . ...      +...+   +    .-+.||++ +.++
T Consensus        19 ~GGlSgl~~~~~~~-~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~-~~~g   96 (326)
T PF13449_consen   19 FGGLSGLDYDPDDG-RFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAV-PPDG   96 (326)
T ss_pred             cCcEeeEEEeCCCC-EEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEE-ecCC
Confidence            45557899997344 4444  4442223466888877651   1 111      11111   1    15679999 7899


Q ss_pred             eEEEEeCCC------CeEEEEeCCCCCeEEE
Q psy959           81 MLYWTDAVR------EKIERSDLAGNNREAL  105 (109)
Q Consensus        81 ~lYw~D~~~------~~I~~~~~dG~~~~~l  105 (109)
                      .+||++.+.      ++|.+++.+|...+.+
T Consensus        97 ~~~is~E~~~~~~~~p~I~~~~~~G~~~~~~  127 (326)
T PF13449_consen   97 SFWISSEGGRTGGIPPRIRRFDLDGRVIRRF  127 (326)
T ss_pred             CEEEEeCCccCCCCCCEEEEECCCCcccceE
Confidence            999999999      9999999999876554

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=93.93  E-value=0.3  Score=35.43  Aligned_cols=65  Identities=15%  Similarity=0.180  Sum_probs=46.8

Q ss_pred             CcceEEeeCCCCeEEEEecCC--CCCCCeEEEEEcCCCCcEEE-EeCCC-------------CCceeEEEecCCCeEEEE
Q psy959           22 GRRHFMPPIRLRTLYYTDWGR--FGTAGKILRTTMAGSLKKVI-IEKDL-------------SQPSGLAIDFDDEMLYWT   85 (109)
Q Consensus        22 ~p~~iavd~~~g~lywsd~~~--~~~~~~I~~~~~dG~~~~~l-~~~~~-------------~~p~glaiD~~~~~lYw~   85 (109)
                      .|.||++ +..|.+||++-+.  .+..+.|.+.+.+|...+.+ +...+             .-..+||+.+..+.||-+
T Consensus        86 D~Egi~~-~~~g~~~is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~  164 (326)
T PF13449_consen   86 DPEGIAV-PPDGSFWISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAA  164 (326)
T ss_pred             ChhHeEE-ecCCCEEEEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEE
Confidence            6679999 5699999999771  00129999999999886665 22211             125689999998878877


Q ss_pred             eC
Q psy959           86 DA   87 (109)
Q Consensus        86 D~   87 (109)
                      -.
T Consensus       165 ~E  166 (326)
T PF13449_consen  165 ME  166 (326)
T ss_pred             EC
Confidence            54

>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function

Probab=93.56  E-value=0.89  Score=35.41  Aligned_cols=69  Identities=16%  Similarity=0.202  Sum_probs=47.7

Q ss_pred             cCCCCcceEEeeCCCCeEEEEecCCC---------------CCCCeEEEEEcCCC-------CcEEEEe-----------
Q psy959           18 QAIPGRRHFMPPIRLRTLYYTDWGRF---------------GTAGKILRTTMAGS-------LKKVIIE-----------   64 (109)
Q Consensus        18 ~~l~~p~~iavd~~~g~lywsd~~~~---------------~~~~~I~~~~~dG~-------~~~~l~~-----------   64 (109)
                      +.+..|.+|+++|.++.+|++-....               ...+.|.+...++.       .-..++.           
T Consensus       347 T~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~~  426 (524)
T PF05787_consen  347 TPFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGNG  426 (524)
T ss_pred             ccccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCcccccccc
Confidence            34789999999999999999975532               12468988887755       1122222           


Q ss_pred             ------CCCCCceeEEEecCCCeEEEEeC
Q psy959           65 ------KDLSQPSGLAIDFDDEMLYWTDA   87 (109)
Q Consensus        65 ------~~~~~p~glaiD~~~~~lYw~D~   87 (109)
                            ..+..|-+|++|+. ++|+.+.-
T Consensus       427 ~~~~~~~~f~sPDNL~~d~~-G~LwI~eD  454 (524)
T PF05787_consen  427 SNKCDDNGFASPDNLAFDPD-GNLWIQED  454 (524)
T ss_pred             cCcccCCCcCCCCceEECCC-CCEEEEeC
Confidence                  12678999999986 45665544

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=93.46  E-value=2.9  Score=32.52  Aligned_cols=95  Identities=5%  Similarity=-0.047  Sum_probs=71.0

Q ss_pred             eecCCCCCccEEEecCCCCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCCcEEEEeCCCCCceeEEEecCCCeEE
Q psy959            4 TDKDLLKTHRSLLLQAIPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLY   83 (109)
Q Consensus         4 ~~~~l~G~~~~~li~~l~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glaiD~~~~~lY   83 (109)
                      ..-+.+|...+.+..++.+..++.+++...++-.++.     ...|...++|..+.+.+-...-....++++++..+.+=
T Consensus       385 ~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNd-----r~el~vididngnv~~idkS~~~lItdf~~~~nsr~iA  459 (668)
T COG4946         385 GIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVAND-----RFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIA  459 (668)
T ss_pred             EEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcC-----ceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEE
Confidence            4556777888888889999999999995555776664     47899999998888877666666778888888777655


Q ss_pred             EEeCC---CCeEEEEeCCCCCeE
Q psy959           84 WTDAV---REKIERSDLAGNNRE  103 (109)
Q Consensus        84 w~D~~---~~~I~~~~~dG~~~~  103 (109)
                      .+=..   ...|...+++|...-
T Consensus       460 YafP~gy~tq~Iklydm~~~Kiy  482 (668)
T COG4946         460 YAFPEGYYTQSIKLYDMDGGKIY  482 (668)
T ss_pred             EecCcceeeeeEEEEecCCCeEE
Confidence            44332   467888888885543

>PRK04792 tolB translocation protein TolB; Provisional

Probab=93.43  E-value=2.6  Score=31.91  Aligned_cols=81  Identities=17%  Similarity=0.111  Sum_probs=53.3

Q ss_pred             cceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCCcEEEEeCCCCCceeEEEecCCCeEEEEeCC--CCeEEEEeCCCC
Q psy959           23 RRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAV--REKIERSDLAGN  100 (109)
Q Consensus        23 p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glaiD~~~~~lYw~D~~--~~~I~~~~~dG~  100 (109)
                      ....+..|....|+++....  ....|++.++++...+.+.... ....+.++.+..+.||.+...  ...|..+++++.
T Consensus       308 ~~~p~wSpDG~~I~f~s~~~--g~~~Iy~~dl~~g~~~~Lt~~g-~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g  384 (448)
T PRK04792        308 DTEPSWHPDGKSLIFTSERG--GKPQIYRVNLASGKVSRLTFEG-EQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETG  384 (448)
T ss_pred             ccceEECCCCCEEEEEECCC--CCceEEEEECCCCCEEEEecCC-CCCcCeeECCCCCEEEEEEecCCceEEEEEECCCC
Confidence            34556677667787764321  2578999999766555443222 233456788889999888654  347888999887


Q ss_pred             CeEEEE
Q psy959          101 NREALY  106 (109)
Q Consensus       101 ~~~~l~  106 (109)
                      ..+.+.
T Consensus       385 ~~~~lt  390 (448)
T PRK04792        385 AMQVLT  390 (448)
T ss_pred             CeEEcc
Confidence            766554

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=92.98  E-value=3  Score=31.32  Aligned_cols=77  Identities=16%  Similarity=0.165  Sum_probs=51.0

Q ss_pred             CCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcC--C-CCcEEEEeC---C-CCCceeEEEecC---CCeEEEEeCCCC
Q psy959           21 PGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMA--G-SLKKVIIEK---D-LSQPSGLAIDFD---DEMLYWTDAVRE   90 (109)
Q Consensus        21 ~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~d--G-~~~~~l~~~---~-~~~p~glaiD~~---~~~lYw~D~~~~   90 (109)
                      ..|.|+++|..+|.||..+-.     .-|.+...+  + ..++.+...   . ..-..||+|=..   .+.|..++.+..
T Consensus       208 sQ~EGCVVDDe~g~LYvgEE~-----~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~  282 (381)
T PF02333_consen  208 SQPEGCVVDDETGRLYVGEED-----VGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDN  282 (381)
T ss_dssp             S-EEEEEEETTTTEEEEEETT-----TEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGT
T ss_pred             CcceEEEEecccCCEEEecCc-----cEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCC
Confidence            578999999999999999864     789998886  3 334433221   1 346889998432   356777787777


Q ss_pred             eEEEEeCCCCCe
Q psy959           91 KIERSDLAGNNR  102 (109)
Q Consensus        91 ~I~~~~~dG~~~  102 (109)
                      ..-..+..|.+.
T Consensus       283 sf~Vy~r~~~~~  294 (381)
T PF02333_consen  283 SFAVYDREGPNA  294 (381)
T ss_dssp             EEEEEESSTT--
T ss_pred             eEEEEecCCCCc
Confidence            777777777543

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>PRK04043 tolB translocation protein TolB; Provisional

Probab=92.92  E-value=3.1  Score=31.37  Aligned_cols=98  Identities=14%  Similarity=0.082  Sum_probs=61.2

Q ss_pred             ecCCCCCccEEEecCCCCcceEEeeCCCC-eEEEEecCCCCCCCeEEEEEcCCCCcEEEEeCCCCCceeEEEecCCCeEE
Q psy959            5 DKDLLKTHRSLLLQAIPGRRHFMPPIRLR-TLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLY   83 (109)
Q Consensus         5 ~~~l~G~~~~~li~~l~~p~~iavd~~~g-~lywsd~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glaiD~~~~~lY   83 (109)
                      .+|.||.+.+++..+ ..-..-...|..+ .+|++....  ..+.|++.++.+..++.|.... .....-.+.|..++|.
T Consensus       173 ~~d~dg~~~~~~~~~-~~~~~p~wSpDG~~~i~y~s~~~--~~~~Iyv~dl~tg~~~~lt~~~-g~~~~~~~SPDG~~la  248 (419)
T PRK04043        173 LADYTLTYQKVIVKG-GLNIFPKWANKEQTAFYYTSYGE--RKPTLYKYNLYTGKKEKIASSQ-GMLVVSDVSKDGSKLL  248 (419)
T ss_pred             EECCCCCceeEEccC-CCeEeEEECCCCCcEEEEEEccC--CCCEEEEEECCCCcEEEEecCC-CcEEeeEECCCCCEEE
Confidence            467788887777654 2112334455344 377765431  1579999999877777665421 1122345677788887


Q ss_pred             EEeC--CCCeEEEEeCCCCCeEEEE
Q psy959           84 WTDA--VREKIERSDLAGNNREALY  106 (109)
Q Consensus        84 w~D~--~~~~I~~~~~dG~~~~~l~  106 (109)
                      ++..  +...|+.++++|...+.|.
T Consensus       249 ~~~~~~g~~~Iy~~dl~~g~~~~LT  273 (419)
T PRK04043        249 LTMAPKGQPDIYLYDTNTKTLTQIT  273 (419)
T ss_pred             EEEccCCCcEEEEEECCCCcEEEcc
Confidence            7755  3568999999887766554

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=92.56  E-value=3.5  Score=30.99  Aligned_cols=77  Identities=21%  Similarity=0.223  Sum_probs=47.1

Q ss_pred             cCCCCcceEEe--eCCCCeEEEEecCCCCCCCeEEEEEc--CCCC--cEEEEe--CCCCCceeEEEecCCCeEEEEeCCC
Q psy959           18 QAIPGRRHFMP--PIRLRTLYYTDWGRFGTAGKILRTTM--AGSL--KKVIIE--KDLSQPSGLAIDFDDEMLYWTDAVR   89 (109)
Q Consensus        18 ~~l~~p~~iav--d~~~g~lywsd~~~~~~~~~I~~~~~--dG~~--~~~l~~--~~~~~p~glaiD~~~~~lYw~D~~~   89 (109)
                      ..+..|+|+++  ++.+|.+|..-...   .+.+....+  ++..  .-.++.  .--.+|.|+++|...+.||..+...
T Consensus       153 ~~~~e~yGlcly~~~~~g~~ya~v~~k---~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe~g~LYvgEE~~  229 (381)
T PF02333_consen  153 TDLSEPYGLCLYRSPSTGALYAFVNGK---DGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDETGRLYVGEEDV  229 (381)
T ss_dssp             -SSSSEEEEEEEE-TTT--EEEEEEET---TSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETTTTEEEEEETTT
T ss_pred             cccccceeeEEeecCCCCcEEEEEecC---CceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEecccCCEEEecCcc
Confidence            34566888887  46678777665443   355655555  3332  222332  1235899999999999999999864


Q ss_pred             CeEEEEeCC
Q psy959           90 EKIERSDLA   98 (109)
Q Consensus        90 ~~I~~~~~d   98 (109)
                       -|++...+
T Consensus       230 -GIW~y~Ae  237 (381)
T PF02333_consen  230 -GIWRYDAE  237 (381)
T ss_dssp             -EEEEEESS
T ss_pred             -EEEEEecC
Confidence             67777776

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>PRK05137 tolB translocation protein TolB; Provisional

Probab=92.43  E-value=3.6  Score=30.85  Aligned_cols=98  Identities=8%  Similarity=-0.023  Sum_probs=60.3

Q ss_pred             cCCCCCccEEEecCCCCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCCcEEEEeCCCCCceeEEEecCCCeEEEE
Q psy959            6 KDLLKTHRSLLLQAIPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWT   85 (109)
Q Consensus         6 ~~l~G~~~~~li~~l~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glaiD~~~~~lYw~   85 (109)
                      +|.+|...+.+...-......+..|....|+++....  ....|+..++++..++.+... -......++.|..++|+++
T Consensus       187 ~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~--g~~~i~~~dl~~g~~~~l~~~-~g~~~~~~~SPDG~~la~~  263 (435)
T PRK05137        187 MDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYAN--GRPRVYLLDLETGQRELVGNF-PGMTFAPRFSPDGRKVVMS  263 (435)
T ss_pred             ECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecC--CCCEEEEEECCCCcEEEeecC-CCcccCcEECCCCCEEEEE
Confidence            4556666555543333344566677666777765432  157899999987666555432 1223456777888888776


Q ss_pred             eC--CCCeEEEEeCCCCCeEEEE
Q psy959           86 DA--VREKIERSDLAGNNREALY  106 (109)
Q Consensus        86 D~--~~~~I~~~~~dG~~~~~l~  106 (109)
                      -.  +...|+.+++++...+.|.
T Consensus       264 ~~~~g~~~Iy~~d~~~~~~~~Lt  286 (435)
T PRK05137        264 LSQGGNTDIYTMDLRSGTTTRLT  286 (435)
T ss_pred             EecCCCceEEEEECCCCceEEcc
Confidence            43  3467888888877665553

>PRK04922 tolB translocation protein TolB; Provisional

Probab=92.42  E-value=3.6  Score=30.85  Aligned_cols=80  Identities=13%  Similarity=0.112  Sum_probs=52.3

Q ss_pred             ceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCCcEEEEeCCCCCceeEEEecCCCeEEEEeCC--CCeEEEEeCCCCC
Q psy959           24 RHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAV--REKIERSDLAGNN  101 (109)
Q Consensus        24 ~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glaiD~~~~~lYw~D~~--~~~I~~~~~dG~~  101 (109)
                      ...+..|....|+++....  ....|+..++++...+.+.... ......++.+..+.|+++...  ...|...++++..
T Consensus       295 ~~~~~spDG~~l~f~sd~~--g~~~iy~~dl~~g~~~~lt~~g-~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~  371 (433)
T PRK04922        295 TEPTWAPDGKSIYFTSDRG--GRPQIYRVAASGGSAERLTFQG-NYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGS  371 (433)
T ss_pred             cceEECCCCCEEEEEECCC--CCceEEEEECCCCCeEEeecCC-CCccCEEECCCCCEEEEEECCCCceeEEEEECCCCC
Confidence            4567777666777664221  1467999998776655554322 334467888889999987653  3478899988776


Q ss_pred             eEEEE
Q psy959          102 REALY  106 (109)
Q Consensus       102 ~~~l~  106 (109)
                      .+.+.
T Consensus       372 ~~~Lt  376 (433)
T PRK04922        372 VRTLT  376 (433)
T ss_pred             eEECC
Confidence            65543

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=92.38  E-value=2.2  Score=29.78  Aligned_cols=69  Identities=16%  Similarity=0.086  Sum_probs=48.1

Q ss_pred             eeCCCCeEEEEecCCCCCCCeEEEEEcCCCC-cEEEEe-----------CCCCCceeEEEecCCCeEEEEeCCCCeEEEE
Q psy959           28 PPIRLRTLYYTDWGRFGTAGKILRTTMAGSL-KKVIIE-----------KDLSQPSGLAIDFDDEMLYWTDAVREKIERS   95 (109)
Q Consensus        28 vd~~~g~lywsd~~~~~~~~~I~~~~~dG~~-~~~l~~-----------~~~~~p~glaiD~~~~~lYw~D~~~~~I~~~   95 (109)
                      +.+..|.+|=--|.    ..+|.|...+... ...+--           .....++|||.|+..+++|.+-..-..+.-+
T Consensus       181 LE~VdG~lyANVw~----t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK~wp~lfEV  256 (262)
T COG3823         181 LEWVDGELYANVWQ----TTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGKLWPLLFEV  256 (262)
T ss_pred             eeeeccEEEEeeee----ecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEecCcCceeEEE
Confidence            45666777755554    5778887776333 333221           1244799999999999999998888888887


Q ss_pred             eCCCC
Q psy959           96 DLAGN  100 (109)
Q Consensus        96 ~~dG~  100 (109)
                      .+++.
T Consensus       257 k~~~a  261 (262)
T COG3823         257 KLDEA  261 (262)
T ss_pred             EecCC
Confidence            77764

>PRK04043 tolB translocation protein TolB; Provisional

Probab=92.26  E-value=3.9  Score=30.86  Aligned_cols=77  Identities=12%  Similarity=-0.091  Sum_probs=51.6

Q ss_pred             EEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCCcEEEEeCCCCCceeEEEecCCCeEEEEeC--CCCeEEEEeCCCCCeE
Q psy959           26 FMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDA--VREKIERSDLAGNNRE  103 (109)
Q Consensus        26 iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glaiD~~~~~lYw~D~--~~~~I~~~~~dG~~~~  103 (109)
                      .+..|....|.++-...  ....|+..++++...+.|..... .-..-...|..++||++..  +...|+.++++|...+
T Consensus       238 ~~~SPDG~~la~~~~~~--g~~~Iy~~dl~~g~~~~LT~~~~-~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~  314 (419)
T PRK04043        238 SDVSKDGSKLLLTMAPK--GQPDIYLYDTNTKTLTQITNYPG-IDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVE  314 (419)
T ss_pred             eEECCCCCEEEEEEccC--CCcEEEEEECCCCcEEEcccCCC-ccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeE
Confidence            34566556787775432  26899999998877666654321 1122357788889998875  3568999999987764


Q ss_pred             EE
Q psy959          104 AL  105 (109)
Q Consensus       104 ~l  105 (109)
                      .+
T Consensus       315 rl  316 (419)
T PRK04043        315 QV  316 (419)
T ss_pred             eC
Confidence            44

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=92.11  E-value=0.77  Score=22.41  Aligned_cols=42  Identities=21%  Similarity=0.175  Sum_probs=26.4

Q ss_pred             CCCCeEEEEecCCCCCCCeEEEEEcCCCCcEEEEeCCCCCceeEEEe
Q psy959           30 IRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAID   76 (109)
Q Consensus        30 ~~~g~lywsd~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glaiD   76 (109)
                      |..++||.++..    ...|...+........-+.. ...|.+|+++
T Consensus         1 pd~~~lyv~~~~----~~~v~~id~~~~~~~~~i~v-g~~P~~i~~~   42 (42)
T TIGR02276         1 PDGTKLYVTNSG----SNTVSVIDTATNKVIATIPV-GGYPFGVAVS   42 (42)
T ss_pred             CCCCEEEEEeCC----CCEEEEEECCCCeEEEEEEC-CCCCceEEeC
Confidence            346789999987    57888877632222111222 4679988874

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>KOG4499|consensus

Probab=92.03  E-value=1.8  Score=30.85  Aligned_cols=47  Identities=13%  Similarity=0.237  Sum_probs=36.0

Q ss_pred             CccEEEec--C-----CCCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcC-CCCcEEE
Q psy959           11 THRSLLLQ--A-----IPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMA-GSLKKVI   62 (109)
Q Consensus        11 ~~~~~li~--~-----l~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~d-G~~~~~l   62 (109)
                      ++|++++.  +     -..|.|++||- .|+||.+-+.    .+++++.+.. |+.-..+
T Consensus       195 snr~~i~dlrk~~~~e~~~PDGm~ID~-eG~L~Va~~n----g~~V~~~dp~tGK~L~ei  249 (310)
T KOG4499|consen  195 SNRKVIFDLRKSQPFESLEPDGMTIDT-EGNLYVATFN----GGTVQKVDPTTGKILLEI  249 (310)
T ss_pred             cCcceeEEeccCCCcCCCCCCcceEcc-CCcEEEEEec----CcEEEEECCCCCcEEEEE
Confidence            46778872  2     35689999998 9999999998    7899998874 6654444

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.02  E-value=3.1  Score=30.29  Aligned_cols=82  Identities=20%  Similarity=0.104  Sum_probs=58.6

Q ss_pred             CcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCCcEEEEe----CC----CCCceeEEEecCCCeEEEEeCCCCeEE
Q psy959           22 GRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIE----KD----LSQPSGLAIDFDDEMLYWTDAVREKIE   93 (109)
Q Consensus        22 ~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~~~~l~~----~~----~~~p~glaiD~~~~~lYw~D~~~~~I~   93 (109)
                      .-.|+|-||.++.+|++--..   .-.|+....+-+.-..=..    ..    +.-..|+..|+.++.|+........+.
T Consensus       182 GfEGlA~d~~~~~l~~aKEr~---P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~  258 (316)
T COG3204         182 GFEGLAWDPVDHRLFVAKERN---PIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLL  258 (316)
T ss_pred             CceeeecCCCCceEEEEEccC---CcEEEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEEEecCCceEE
Confidence            346899999999999887553   5778777754422111010    01    345779999999999999998888999


Q ss_pred             EEeCCCCCeEEEE
Q psy959           94 RSDLAGNNREALY  106 (109)
Q Consensus        94 ~~~~dG~~~~~l~  106 (109)
                      -++.+|.-+..+.
T Consensus       259 Evd~~G~~~~~ls  271 (316)
T COG3204         259 EVDLSGEVIELLS  271 (316)
T ss_pred             EEecCCCeeeeEE
Confidence            9999998655543

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=91.85  E-value=3.9  Score=30.01  Aligned_cols=81  Identities=10%  Similarity=0.042  Sum_probs=54.3

Q ss_pred             CCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCCcEEEEeCCCCCceeEEEecCCCeEEEEeCC--CCeEEEEeCC
Q psy959           21 PGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAV--REKIERSDLA   98 (109)
Q Consensus        21 ~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glaiD~~~~~lYw~D~~--~~~I~~~~~d   98 (109)
                      ......++.|...+|+++....  ...+|...++++...+.+....  .....++.+..+.|+++...  ...++....+
T Consensus       322 ~~~~~~~~spdg~~i~~~~~~~--~~~~i~~~d~~~~~~~~l~~~~--~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~  397 (417)
T TIGR02800       322 GYNASPSWSPDGDLIAFVHREG--GGFNIAVMDLDGGGERVLTDTG--LDESPSFAPNGRMILYATTRGGRGVLGLVSTD  397 (417)
T ss_pred             CCccCeEECCCCCEEEEEEccC--CceEEEEEeCCCCCeEEccCCC--CCCCceECCCCCEEEEEEeCCCcEEEEEEECC
Confidence            3345667888777888887542  1357888888875555544321  23345677778899998774  3578888899


Q ss_pred             CCCeEEE
Q psy959           99 GNNREAL  105 (109)
Q Consensus        99 G~~~~~l  105 (109)
                      |...+.+
T Consensus       398 g~~~~~~  404 (417)
T TIGR02800       398 GRFRARL  404 (417)
T ss_pred             CceeeEC
Confidence            9876655

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK01029 tolB translocation protein TolB; Provisional

Probab=91.38  E-value=5  Score=30.29  Aligned_cols=81  Identities=6%  Similarity=-0.014  Sum_probs=56.3

Q ss_pred             ceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCCcEEEEeCCCCCceeEEEecCCCeEEEEeC--CCCeEEEEeCCCCC
Q psy959           24 RHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDA--VREKIERSDLAGNN  101 (109)
Q Consensus        24 ~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glaiD~~~~~lYw~D~--~~~~I~~~~~dG~~  101 (109)
                      ...+..|...+|+++....  ....|.+.++++...+.+... .......+..+..+.||++..  +...|..++++|..
T Consensus       330 ~~p~wSPDG~~Laf~~~~~--g~~~I~v~dl~~g~~~~Lt~~-~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~  406 (428)
T PRK01029        330 SCPAWSPDGKKIAFCSVIK--GVRQICVYDLATGRDYQLTTS-PENKESPSWAIDSLHLVYSAGNSNESELYLISLITKK  406 (428)
T ss_pred             cceeECCCCCEEEEEEcCC--CCcEEEEEECCCCCeEEccCC-CCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence            4566777667788775432  146899999987776666543 234456677778888887654  35689999999987


Q ss_pred             eEEEEe
Q psy959          102 REALYL  107 (109)
Q Consensus       102 ~~~l~~  107 (109)
                      .+.+..
T Consensus       407 ~~~Lt~  412 (428)
T PRK01029        407 TRKIVI  412 (428)
T ss_pred             EEEeec
Confidence            777654

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=91.35  E-value=4.5  Score=29.71  Aligned_cols=98  Identities=13%  Similarity=0.009  Sum_probs=58.9

Q ss_pred             ecCCCCCccEEEecCCCCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCCcEEEEeCCCCCceeEEEecCCCeEEE
Q psy959            5 DKDLLKTHRSLLLQAIPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYW   84 (109)
Q Consensus         5 ~~~l~G~~~~~li~~l~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glaiD~~~~~lYw   84 (109)
                      ..+.+|...+.+...-....+.+..|...+|+|+....  ....|+..++++...+.+... -......+..+.++.||+
T Consensus       174 ~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~--~~~~i~v~d~~~g~~~~~~~~-~~~~~~~~~spDg~~l~~  250 (417)
T TIGR02800       174 VADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFES--GKPEIYVQDLATGQREKVASF-PGMNGAPAFSPDGSKLAV  250 (417)
T ss_pred             EEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCC--CCcEEEEEECCCCCEEEeecC-CCCccceEECCCCCEEEE
Confidence            34556666656553222233456777777888886542  146899888876544444322 123345677777888887


Q ss_pred             EeC--CCCeEEEEeCCCCCeEEE
Q psy959           85 TDA--VREKIERSDLAGNNREAL  105 (109)
Q Consensus        85 ~D~--~~~~I~~~~~dG~~~~~l  105 (109)
                      +..  +...|...++++...+.+
T Consensus       251 ~~~~~~~~~i~~~d~~~~~~~~l  273 (417)
T TIGR02800       251 SLSKDGNPDIYVMDLDGKQLTRL  273 (417)
T ss_pred             EECCCCCccEEEEECCCCCEEEC
Confidence            644  345788888876654443

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller

Probab=91.14  E-value=0.22  Score=24.75  Aligned_cols=20  Identities=10%  Similarity=0.016  Sum_probs=16.7

Q ss_pred             CCcceEEeeCCCCeEEEEecC
Q psy959           21 PGRRHFMPPIRLRTLYYTDWG   41 (109)
Q Consensus        21 ~~p~~iavd~~~g~lywsd~~   41 (109)
                      ..|.+||+|+ .|++|.+-..
T Consensus        13 ~~~~~IavD~-~GNiYv~G~T   32 (38)
T PF06739_consen   13 DYGNGIAVDS-NGNIYVTGYT   32 (38)
T ss_pred             eeEEEEEECC-CCCEEEEEee
Confidence            4689999998 8999988653

SBBP stands for Seven Bladed Beta Propeller.

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=90.81  E-value=5.3  Score=29.64  Aligned_cols=80  Identities=10%  Similarity=-0.138  Sum_probs=54.9

Q ss_pred             CCCcceEEeeCCCCeEEEEecCC----CC-CCCeEEEEEcC-CCCcEEEEeC------CCCCceeEEEecCCCeEEEEeC
Q psy959           20 IPGRRHFMPPIRLRTLYYTDWGR----FG-TAGKILRTTMA-GSLKKVIIEK------DLSQPSGLAIDFDDEMLYWTDA   87 (109)
Q Consensus        20 l~~p~~iavd~~~g~lywsd~~~----~~-~~~~I~~~~~d-G~~~~~l~~~------~~~~p~glaiD~~~~~lYw~D~   87 (109)
                      -..|+++ +.|..+.||.+....    .| ....|...+.. ++....|...      ....|..+++.+.+++||.++.
T Consensus        46 G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~  124 (352)
T TIGR02658        46 GFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQF  124 (352)
T ss_pred             cCCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecC
Confidence            3689996 899889999998720    00 15778887764 4444444321      1345669999999999999987


Q ss_pred             C-CCeEEEEeCCCC
Q psy959           88 V-REKIERSDLAGN  100 (109)
Q Consensus        88 ~-~~~I~~~~~dG~  100 (109)
                      . ...+..+++...
T Consensus       125 ~p~~~V~VvD~~~~  138 (352)
T TIGR02658       125 SPSPAVGVVDLEGK  138 (352)
T ss_pred             CCCCEEEEEECCCC
Confidence            6 667777766543

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=90.48  E-value=5.3  Score=29.11  Aligned_cols=84  Identities=14%  Similarity=0.111  Sum_probs=54.1

Q ss_pred             CCCcceEEee-CCCCeEEEEecCCCCCCCeEEEEEcCCCCcEEEEeCCCCCceeEEEecCCCeEEEEeCC----CCeEEE
Q psy959           20 IPGRRHFMPP-IRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAV----REKIER   94 (109)
Q Consensus        20 l~~p~~iavd-~~~g~lywsd~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glaiD~~~~~lYw~D~~----~~~I~~   94 (109)
                      +.....+..- +....++|.-...  +...|+..+.+|...+.|......--.-+.+|..++.||++-..    ...+++
T Consensus       234 v~~~~~~~~~~~~~~~~l~~s~~~--G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~  311 (353)
T PF00930_consen  234 VDVYDPPHFLGPDGNEFLWISERD--GYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYR  311 (353)
T ss_dssp             SSSSSEEEE-TTTSSEEEEEEETT--SSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEE
T ss_pred             eeeecccccccCCCCEEEEEEEcC--CCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEE
Confidence            4344444432 3344444443321  37899999999988665544333322347899999999999875    569999


Q ss_pred             EeCC-CCCeEEE
Q psy959           95 SDLA-GNNREAL  105 (109)
Q Consensus        95 ~~~d-G~~~~~l  105 (109)
                      ++++ |...+.|
T Consensus       312 v~~~~~~~~~~L  323 (353)
T PF00930_consen  312 VSLDSGGEPKCL  323 (353)
T ss_dssp             EETTETTEEEES
T ss_pred             EEeCCCCCeEec
Confidence            9999 7776655

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PRK02889 tolB translocation protein TolB; Provisional

Probab=90.01  E-value=6.6  Score=29.45  Aligned_cols=80  Identities=24%  Similarity=0.224  Sum_probs=50.1

Q ss_pred             ceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCCcEEEEeCCCCCceeEEEecCCCeEEEEeCC--CCeEEEEeCCCCC
Q psy959           24 RHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAV--REKIERSDLAGNN  101 (109)
Q Consensus        24 ~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glaiD~~~~~lYw~D~~--~~~I~~~~~dG~~  101 (109)
                      ...+..|....|+++...  +....|+..++++...+.+.... ......++.+..+.|+++...  ...|...++++..
T Consensus       287 ~~~~wSpDG~~l~f~s~~--~g~~~Iy~~~~~~g~~~~lt~~g-~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~  363 (427)
T PRK02889        287 TEPFFSPDGRSIYFTSDR--GGAPQIYRMPASGGAAQRVTFTG-SYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQ  363 (427)
T ss_pred             cCeEEcCCCCEEEEEecC--CCCcEEEEEECCCCceEEEecCC-CCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCC
Confidence            345667756677765321  12578999988776655444322 223346788888898887653  2478888888766


Q ss_pred             eEEEE
Q psy959          102 REALY  106 (109)
Q Consensus       102 ~~~l~  106 (109)
                      .+.+.
T Consensus       364 ~~~lt  368 (427)
T PRK02889        364 VTALT  368 (427)
T ss_pred             eEEcc
Confidence            65554

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=89.67  E-value=4.4  Score=30.51  Aligned_cols=72  Identities=17%  Similarity=0.236  Sum_probs=43.0

Q ss_pred             CCeEEEEecCCCCCCCeEEEEEcCCCCcEEEEeCCCCCceeEEEecCCCeEEEEeCCCCeEEEEeCCCCCeEEEEe
Q psy959           32 LRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIERSDLAGNNREALYL  107 (109)
Q Consensus        32 ~g~lywsd~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glaiD~~~~~lYw~D~~~~~I~~~~~dG~~~~~l~~  107 (109)
                      +..||.++..   ....++..+++....+.|.........|..+.+.++.+||+... ..+.+++++....++|+.
T Consensus        48 ~kllF~s~~d---g~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~-~~l~~vdL~T~e~~~vy~  119 (386)
T PF14583_consen   48 RKLLFASDFD---GNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNG-RSLRRVDLDTLEERVVYE  119 (386)
T ss_dssp             -EEEEEE-TT---SS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETT-TEEEEEETTT--EEEEEE
T ss_pred             CEEEEEeccC---CCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECC-CeEEEEECCcCcEEEEEE
Confidence            3466666644   26888999998877777766433344467777889999887643 588999999888777764

>KOG4649|consensus

Probab=89.63  E-value=2.1  Score=30.96  Aligned_cols=30  Identities=7%  Similarity=-0.083  Sum_probs=23.2

Q ss_pred             CCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEc
Q psy959           21 PGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTM   54 (109)
Q Consensus        21 ~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~   54 (109)
                      ..-.-+|||+.+|+|||-..-    ..+|+...+
T Consensus        31 Hs~~~~avd~~sG~~~We~il----g~RiE~sa~   60 (354)
T KOG4649|consen   31 HSGIVIAVDPQSGNLIWEAIL----GVRIECSAI   60 (354)
T ss_pred             CCceEEEecCCCCcEEeehhh----CceeeeeeE
Confidence            344568999999999998765    578877665

>PRK03629 tolB translocation protein TolB; Provisional

Probab=89.63  E-value=7.2  Score=29.33  Aligned_cols=79  Identities=10%  Similarity=0.032  Sum_probs=53.0

Q ss_pred             ceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCCcEEEEeCCCCCceeEEEecCCCeEEEEeC--CCCeEEEEeCCCCC
Q psy959           24 RHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDA--VREKIERSDLAGNN  101 (109)
Q Consensus        24 ~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glaiD~~~~~lYw~D~--~~~~I~~~~~dG~~  101 (109)
                      .+.+..|...+|+|+....  ....|+..++++...+.+... -......+..+..++|+++-.  +...|+.++++|..
T Consensus       246 ~~~~~SPDG~~La~~~~~~--g~~~I~~~d~~tg~~~~lt~~-~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~  322 (429)
T PRK03629        246 GAPAFSPDGSKLAFALSKT--GSLNLYVMDLASGQIRQVTDG-RSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGA  322 (429)
T ss_pred             CCeEECCCCCEEEEEEcCC--CCcEEEEEECCCCCEEEccCC-CCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCC
Confidence            3567888777899875431  146799999987666555432 234456678888888766543  34689999988876


Q ss_pred             eEEE
Q psy959          102 REAL  105 (109)
Q Consensus       102 ~~~l  105 (109)
                      .+.+
T Consensus       323 ~~~l  326 (429)
T PRK03629        323 PQRI  326 (429)
T ss_pred             eEEe
Confidence            5554

>PRK00178 tolB translocation protein TolB; Provisional

Probab=89.14  E-value=7.6  Score=28.90  Aligned_cols=79  Identities=15%  Similarity=0.097  Sum_probs=50.6

Q ss_pred             eEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCCcEEEEeCCCCCceeEEEecCCCeEEEEeCC--CCeEEEEeCCCCCe
Q psy959           25 HFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAV--REKIERSDLAGNNR  102 (109)
Q Consensus        25 ~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glaiD~~~~~lYw~D~~--~~~I~~~~~dG~~~  102 (109)
                      ..+..|..+.||++....  ....|++.++++...+.+.... ......++.+..+.|+++...  ...|...++++...
T Consensus       291 ~~~~spDg~~i~f~s~~~--g~~~iy~~d~~~g~~~~lt~~~-~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~  367 (430)
T PRK00178        291 EPFWGKDGRTLYFTSDRG--GKPQIYKVNVNGGRAERVTFVG-NYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV  367 (430)
T ss_pred             CeEECCCCCEEEEEECCC--CCceEEEEECCCCCEEEeecCC-CCccceEECCCCCEEEEEEccCCceEEEEEECCCCCE
Confidence            455666666787764321  2578999998766655443322 223345678888999988753  34688888887766


Q ss_pred             EEEE
Q psy959          103 EALY  106 (109)
Q Consensus       103 ~~l~  106 (109)
                      +.+.
T Consensus       368 ~~lt  371 (430)
T PRK00178        368 RILT  371 (430)
T ss_pred             EEcc
Confidence            6554

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=88.08  E-value=9.9  Score=28.92  Aligned_cols=77  Identities=14%  Similarity=0.037  Sum_probs=49.9

Q ss_pred             EeeCCCCeEEEEecCCCCCCCeEEEEEcCCCCcEEEEeCCCCCceeEEEecCCCeEEEEeC--CCCeEEEEeCCCCCeEE
Q psy959           27 MPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDA--VREKIERSDLAGNNREA  104 (109)
Q Consensus        27 avd~~~g~lywsd~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glaiD~~~~~lYw~D~--~~~~I~~~~~dG~~~~~  104 (109)
                      +.-|...+|.++-...  ....|+..+++|.....|....-..- .=.+-|..+.||++..  +...|.+++.+|+..+.
T Consensus       244 ~fspDG~~l~f~~~rd--g~~~iy~~dl~~~~~~~Lt~~~gi~~-~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~r  320 (425)
T COG0823         244 AFSPDGSKLAFSSSRD--GSPDIYLMDLDGKNLPRLTNGFGINT-SPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTR  320 (425)
T ss_pred             cCCCCCCEEEEEECCC--CCccEEEEcCCCCcceecccCCcccc-CccCCCCCCEEEEEeCCCCCcceEEECCCCCceeE
Confidence            3444456676665443  37999999999988665543211111 1244566788877755  46799999999998655


Q ss_pred             EE
Q psy959          105 LY  106 (109)
Q Consensus       105 l~  106 (109)
                      +.
T Consensus       321 iT  322 (425)
T COG0823         321 LT  322 (425)
T ss_pred             ee
Confidence            43

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=84.72  E-value=14  Score=27.29  Aligned_cols=75  Identities=25%  Similarity=0.201  Sum_probs=56.5

Q ss_pred             CCCeEEEEecCCCC---------CCCeEEEEEcCCCCcEEEEeC-CCCCceeEEEecC-----CCeEEEEeCCCCeEEEE
Q psy959           31 RLRTLYYTDWGRFG---------TAGKILRTTMAGSLKKVIIEK-DLSQPSGLAIDFD-----DEMLYWTDAVREKIERS   95 (109)
Q Consensus        31 ~~g~lywsd~~~~~---------~~~~I~~~~~dG~~~~~l~~~-~~~~p~glaiD~~-----~~~lYw~D~~~~~I~~~   95 (109)
                      ..++||++-..++.         ....|.+.+++|...+.+.+. .+..|+|||+-|.     .+.|.....+.++|...
T Consensus       197 ig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaF  276 (336)
T TIGR03118       197 LGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQLLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAY  276 (336)
T ss_pred             ECCeEEEEEEecCCcccccccCCCcceEEEEcCCCcEEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEe
Confidence            47899999644311         246899999999998877653 5899999999654     57888888899999999


Q ss_pred             eCC-CCCeEEE
Q psy959           96 DLA-GNNREAL  105 (109)
Q Consensus        96 ~~d-G~~~~~l  105 (109)
                      +.. |...-.|
T Consensus       277 D~~sG~~~g~L  287 (336)
T TIGR03118       277 DPQSGAQLGQL  287 (336)
T ss_pred             cCCCCceeeee
Confidence            875 6544333

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=84.59  E-value=13  Score=27.11  Aligned_cols=79  Identities=18%  Similarity=0.286  Sum_probs=54.2

Q ss_pred             CCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCC-cEEEEeCCCCCceeEEEecCCCeEEEEeCCCCeEEEEeCCC
Q psy959           21 PGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSL-KKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIERSDLAG   99 (109)
Q Consensus        21 ~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~-~~~l~~~~~~~p~glaiD~~~~~lYw~D~~~~~I~~~~~dG   99 (109)
                      ..-+.|..|| -|.+.-|+++    .+..++.+..-+. ++-=+...-.+|..+-|| ..++++..|...+.|-+++-.-
T Consensus       233 ~gsRriwsdp-ig~~wittwg----~g~l~rfdPs~~sW~eypLPgs~arpys~rVD-~~grVW~sea~agai~rfdpet  306 (353)
T COG4257         233 AGSRRIWSDP-IGRAWITTWG----TGSLHRFDPSVTSWIEYPLPGSKARPYSMRVD-RHGRVWLSEADAGAIGRFDPET  306 (353)
T ss_pred             ccccccccCc-cCcEEEeccC----CceeeEeCcccccceeeeCCCCCCCcceeeec-cCCcEEeeccccCceeecCccc
Confidence            3446688898 7889889988    6888888764333 332233345688899999 4567777798888888777654


Q ss_pred             CCeEEE
Q psy959          100 NNREAL  105 (109)
Q Consensus       100 ~~~~~l  105 (109)
                      ..-.++
T Consensus       307 a~ftv~  312 (353)
T COG4257         307 ARFTVL  312 (353)
T ss_pred             ceEEEe
Confidence            444443

>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]

Probab=83.15  E-value=18  Score=27.45  Aligned_cols=75  Identities=23%  Similarity=0.255  Sum_probs=48.0

Q ss_pred             CcceEEeeCC------CCeEEEEecCCCCCCCeEEEEEcCCCCc---EEEEeCC-CCCceeEEEecCCCeEEEEeCCCCe
Q psy959           22 GRRHFMPPIR------LRTLYYTDWGRFGTAGKILRTTMAGSLK---KVIIEKD-LSQPSGLAIDFDDEMLYWTDAVREK   91 (109)
Q Consensus        22 ~p~~iavd~~------~g~lywsd~~~~~~~~~I~~~~~dG~~~---~~l~~~~-~~~p~glaiD~~~~~lYw~D~~~~~   91 (109)
                      .|-|+++-.-      .+.+|....+    ...+.+...+|..+   +.++..+ -.+|.++++.+..-.|.-+|.+.++
T Consensus       315 ApsGmaFy~G~~fP~~r~~lfV~~hg----sw~~~~~~~~g~~~~~~~~fl~~d~~gR~~dV~v~~DGallv~~D~~~g~  390 (399)
T COG2133         315 APSGMAFYTGDLFPAYRGDLFVGAHG----SWPVLRLRPDGNYKVVLTGFLSGDLGGRPRDVAVAPDGALLVLTDQGDGR  390 (399)
T ss_pred             ccceeEEecCCcCccccCcEEEEeec----ceeEEEeccCCCcceEEEEEEecCCCCcccceEECCCCeEEEeecCCCCe
Confidence            4566665421      2567777665    34677788888843   3333322 2699999998665555555555789


Q ss_pred             EEEEeCCCC
Q psy959           92 IERSDLAGN  100 (109)
Q Consensus        92 I~~~~~dG~  100 (109)
                      |.++...|.
T Consensus       391 i~Rv~~~~~  399 (399)
T COG2133         391 ILRVSYAGT  399 (399)
T ss_pred             EEEecCCCC
Confidence            999988763

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=82.67  E-value=17  Score=26.94  Aligned_cols=71  Identities=18%  Similarity=0.217  Sum_probs=46.7

Q ss_pred             CCcc-eEEeeCCCCeEEEEecCCCCCCCeEEEEEcC-CCCcEEEEeCCCCCceeEEEecCCCeEEEEeCCCCeEEEEeCC
Q psy959           21 PGRR-HFMPPIRLRTLYYTDWGRFGTAGKILRTTMA-GSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIERSDLA   98 (109)
Q Consensus        21 ~~p~-~iavd~~~g~lywsd~~~~~~~~~I~~~~~d-G~~~~~l~~~~~~~p~glaiD~~~~~lYw~D~~~~~I~~~~~d   98 (109)
                      ..|. +++..+..+++|.++.     .+.|.+.++. +.....+-  ....|.|+++.+..+.+|-+....+.+...+..
T Consensus        36 ~~~h~~~~~s~Dgr~~yv~~r-----dg~vsviD~~~~~~v~~i~--~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~  108 (369)
T PF02239_consen   36 GAPHAGLKFSPDGRYLYVANR-----DGTVSVIDLATGKVVATIK--VGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAE  108 (369)
T ss_dssp             TTEEEEEE-TT-SSEEEEEET-----TSEEEEEETTSSSEEEEEE---SSEEEEEEE--TTTEEEEEEEETTEEEEEETT
T ss_pred             CCceeEEEecCCCCEEEEEcC-----CCeEEEEECCcccEEEEEe--cCCCcceEEEcCCCCEEEEEecCCCceeEeccc
Confidence            4443 4666776778999864     4788888885 44333442  245799999999999999998877777666543

...

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=82.09  E-value=16  Score=28.19  Aligned_cols=61  Identities=18%  Similarity=0.343  Sum_probs=33.9

Q ss_pred             cceEEeeCCCCeEEEEecCCCCCCCeEEEEEc-CCCCcEEEEe---CC-C--------------CCceeEEEecCCCeEE
Q psy959           23 RRHFMPPIRLRTLYYTDWGRFGTAGKILRTTM-AGSLKKVIIE---KD-L--------------SQPSGLAIDFDDEMLY   83 (109)
Q Consensus        23 p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~-dG~~~~~l~~---~~-~--------------~~p~glaiD~~~~~lY   83 (109)
                      |..|.+-...++||++.|.    .+.|...+. |..+.+..-+   .+ +              .-|+=+.+....+|||
T Consensus       314 itDI~iSlDDrfLYvs~W~----~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlY  389 (461)
T PF05694_consen  314 ITDILISLDDRFLYVSNWL----HGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLY  389 (461)
T ss_dssp             ---EEE-TTS-EEEEEETT----TTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEE
T ss_pred             eEeEEEccCCCEEEEEccc----CCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEE
Confidence            4556666668999999998    688888888 5555443332   11 1              1356677888899999


Q ss_pred             EEeC
Q psy959           84 WTDA   87 (109)
Q Consensus        84 w~D~   87 (109)
                      +|.+
T Consensus       390 vTnS  393 (461)
T PF05694_consen  390 VTNS  393 (461)
T ss_dssp             EE--
T ss_pred             EEee
Confidence            9987

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PRK02888 nitrous-oxide reductase; Validated

Probab=82.04  E-value=25  Score=28.33  Aligned_cols=32  Identities=13%  Similarity=0.211  Sum_probs=27.0

Q ss_pred             CCCceeEEEecCCCeEEEEeCCCCeEEEEeCC
Q psy959           67 LSQPSGLAIDFDDEMLYWTDAVREKIERSDLA   98 (109)
Q Consensus        67 ~~~p~glaiD~~~~~lYw~D~~~~~I~~~~~d   98 (109)
                      -.+|+|+++.|..+++|.+......+...++.
T Consensus       320 GKsPHGV~vSPDGkylyVanklS~tVSVIDv~  351 (635)
T PRK02888        320 PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVR  351 (635)
T ss_pred             CCCccceEECCCCCEEEEeCCCCCcEEEEECh
Confidence            45899999999999999999887777776654

>PRK01742 tolB translocation protein TolB; Provisional

Probab=81.53  E-value=20  Score=26.87  Aligned_cols=77  Identities=9%  Similarity=0.015  Sum_probs=50.8

Q ss_pred             eEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCCcEEEEeCCCCCceeEEEecCCCeEEEEeC--CCCeEEEEeCCCCCe
Q psy959           25 HFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDA--VREKIERSDLAGNNR  102 (109)
Q Consensus        25 ~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glaiD~~~~~lYw~D~--~~~~I~~~~~dG~~~  102 (109)
                      +++..|....|+++-...  ....|+..++++...+.+.. .-......+..+..++|+++..  +...|+.++.+|...
T Consensus       252 ~~~wSPDG~~La~~~~~~--g~~~Iy~~d~~~~~~~~lt~-~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~  328 (429)
T PRK01742        252 APAFSPDGSRLAFASSKD--GVLNIYVMGANGGTPSQLTS-GAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGA  328 (429)
T ss_pred             ceeECCCCCEEEEEEecC--CcEEEEEEECCCCCeEeecc-CCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCe
Confidence            567778666788864321  14578888888776655543 2233556788888888887643  456888888877655


Q ss_pred             EE
Q psy959          103 EA  104 (109)
Q Consensus       103 ~~  104 (109)
                      +.
T Consensus       329 ~~  330 (429)
T PRK01742        329 SL  330 (429)
T ss_pred             EE
Confidence            43

>PF14759 Reductase_C: Reductase C-terminal; PDB: 3FG2_P 3LXD_A 2YVG_A 2GR1_A 2GQW_A 2GR3_A 2YVF_A 1F3P_A 2GR0_A 2GR2_A

Probab=80.36  E-value=8.6  Score=22.24  Aligned_cols=28  Identities=18%  Similarity=0.359  Sum_probs=20.0

Q ss_pred             EEEecCCCCCCCeEEEEEcCCCCcEEEEeCCC
Q psy959           36 YYTDWGRFGTAGKILRTTMAGSLKKVIIEKDL   67 (109)
Q Consensus        36 ywsd~~~~~~~~~I~~~~~dG~~~~~l~~~~~   67 (109)
                      ||||..    ..+|+.+..-+..-++++..+.
T Consensus         2 FWSdQ~----~~~iq~~G~~~~~~~~v~rg~~   29 (85)
T PF14759_consen    2 FWSDQY----GVRIQIAGLPGGADEVVVRGDP   29 (85)
T ss_dssp             EEEEET----TEEEEEEE-STTSSEEEEEEET
T ss_pred             eecccC----CCeEEEEECCCCCCEEEEEccC
Confidence            899998    6899999986665556655443

...

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	109
3v65_B	386	Crystal Structure Of Agrin And Lrp4 Complex Length		8e-11
3v64_C	349	Crystal Structure Of Agrin And Lrp4 Length = 349		9e-11
3soq_A	318	The Structure Of The First Ywtd Beta Propeller Doma		9e-11
3sob_B	316	The Structure Of The First Ywtd Beta Propeller Doma		1e-10
4dg6_A	616	Crystal Structure Of Domains 1 And 2 Of Lrp6 Length		1e-10
3s94_A	619	Crystal Structure Of Lrp6-E1e2 Length = 619		1e-10
3s2k_A	629	Structural Basis Of Wnt Signaling Inhibition By Dic		5e-06
3s8v_A	623	Crystal Structure Of Lrp6-Dkk1 Complex Length = 623		5e-06
4a0p_A	628	Crystal Structure Of Lrp6p3e3p4e4 Length = 628		5e-06
3p5c_L	440	The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE		1e-05
3p5b_L	400	The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE		1e-05
3m0c_C	791	The X-Ray Crystal Structure Of Pcsk9 In Complex Wit		1e-05
1n7d_A	699	Extracellular Domain Of The Ldl Receptor Length = 6		1e-05
1npe_A	267	Crystal Structure Of Nidogen/laminin Complex Length		1e-05
1ijq_A	316	Crystal Structure Of The Ldl Receptor Ywtd-Egf Doma		3e-05

>pdb|3V65|B Chain B, Crystal Structure Of Agrin And Lrp4 Complex Length = 386

Iteration: 1
 Score = 62.0 bits (149), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 34/95 (35%), Positives = 55/95 (57%), Gaps = 4/95 (4%)
Query: 12  HRSLLL-QAIPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQP 70
           HR +LL Q++   R         T+Y+TDWG      +I  ++M GS +++I +  L  P
Sbjct: 192 HRKVLLWQSLEKPRAIALHPMEGTIYWTDWG---NTPRIEASSMDGSGRRIIADTHLFWP 248
Query: 71  SGLAIDFDDEMLYWTDAVREKIERSDLAGNNREAL 105
           +GL ID+    +YW DA    IER++L G++R+A+
Sbjct: 249 NGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAV 283

>pdb|3V64|C Chain C, Crystal Structure Of Agrin And Lrp4 Length = 349

Iteration: 1
 Score = 62.0 bits (149), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 34/95 (35%), Positives = 55/95 (57%), Gaps = 4/95 (4%)
Query: 12  HRSLLL-QAIPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQP 70
           HR +LL Q++   R         T+Y+TDWG      +I  ++M GS +++I +  L  P
Sbjct: 149 HRKVLLWQSLEKPRAIALHPMEGTIYWTDWG---NTPRIEASSMDGSGRRIIADTHLFWP 205
Query: 71  SGLAIDFDDEMLYWTDAVREKIERSDLAGNNREAL 105
           +GL ID+    +YW DA    IER++L G++R+A+
Sbjct: 206 NGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAV 240

>pdb|3SOQ|A Chain A, The Structure Of The First Ywtd Beta Propeller Domain Of Lrp6 In Complex With A Dkk1 Peptide Length = 318

Iteration: 1
 Score = 62.0 bits (149), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 45/71 (63%), Gaps = 3/71 (4%)
Query: 35  LYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIER 94
           +Y+TDWG      KI R  M GS + +II  ++  P+GL +D++++ LYW DA    I +
Sbjct: 136 MYWTDWGE---VPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHK 192
Query: 95  SDLAGNNREAL 105
           S+L G NR+A+
Sbjct: 193 SNLDGTNRQAV 203

>pdb|3SOB|B Chain B, The Structure Of The First Ywtd Beta Propeller Domain Of Lrp6 In Complex With A Fab Length = 316

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 45/71 (63%), Gaps = 3/71 (4%)
Query: 35  LYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIER 94
           +Y+TDWG      KI R  M GS + +II  ++  P+GL +D++++ LYW DA    I +
Sbjct: 133 MYWTDWGE---VPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHK 189
Query: 95  SDLAGNNREAL 105
           S+L G NR+A+
Sbjct: 190 SNLDGTNRQAV 200

>pdb|4DG6|A Chain A, Crystal Structure Of Domains 1 And 2 Of Lrp6 Length = 616

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 45/71 (63%), Gaps = 3/71 (4%)
Query: 35  LYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIER 94
           +Y+TDWG      KI R  M GS + +II  ++  P+GL +D++++ LYW DA    I +
Sbjct: 133 MYWTDWGE---VPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHK 189
Query: 95  SDLAGNNREAL 105
           S+L G NR+A+
Sbjct: 190 SNLDGTNRQAV 200

>pdb|3S94|A Chain A, Crystal Structure Of Lrp6-E1e2 Length = 619

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 45/71 (63%), Gaps = 3/71 (4%)
Query: 35  LYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIER 94
           +Y+TDWG      KI R  M GS + +II  ++  P+GL +D++++ LYW DA    I +
Sbjct: 141 MYWTDWGE---VPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHK 197
Query: 95  SDLAGNNREAL 105
           S+L G NR+A+
Sbjct: 198 SNLDGTNRQAV 208

>pdb|3S2K|A Chain A, Structural Basis Of Wnt Signaling Inhibition By Dickkopf Binding To Lrp56. Length = 629

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 5/77 (6%)
Query: 33  RTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTD-AVREK 91
           + LY+ D G      +I  + + G  ++V++ KDL  P  LA+D  +  +YWT+   + K
Sbjct: 90  KNLYWADTG----TNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPK 145
Query: 92  IERSDLAGNNREALYLN 108
           I+R+ + G+ R  L  N
Sbjct: 146 IDRAAMDGSERTTLVPN 162

>pdb|3S8V|A Chain A, Crystal Structure Of Lrp6-Dkk1 Complex Length = 623

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 5/77 (6%)
Query: 33  RTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTD-AVREK 91
           + LY+ D G      +I  + + G  ++V++ KDL  P  LA+D  +  +YWT+   + K
Sbjct: 97  KNLYWADTG----TNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPK 152
Query: 92  IERSDLAGNNREALYLN 108
           I+R+ + G+ R  L  N
Sbjct: 153 IDRAAMDGSERTTLVPN 169

>pdb|4A0P|A Chain A, Crystal Structure Of Lrp6p3e3p4e4 Length = 628

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 5/77 (6%)
Query: 33  RTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTD-AVREK 91
           + LY+ D G      +I  + + G  ++V++ KDL  P  LA+D  +  +YWT+   + K
Sbjct: 92  KNLYWADTG----TNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPK 147
Query: 92  IERSDLAGNNREALYLN 108
           I+R+ + G+ R  L  N
Sbjct: 148 IDRAAMDGSERTTLVPN 164

>pdb|3P5C|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE RECEPTOR IN AN Extended Conformation Length = 440

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Query: 35  LYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIER 94
           +Y+TDWG   T  KI +  + G     ++ +++  P+G+ +D     LYW D+    I  
Sbjct: 256 MYWTDWG---TPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISS 312
Query: 95  SDLAGNNREAL 105
            D+ G NR+ +
Sbjct: 313 IDVNGGNRKTI 323

>pdb|3P5B|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE RECEPTOR IN AN Extended Conformation Length = 400

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Query: 35  LYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIER 94
           +Y+TDWG   T  KI +  + G     ++ +++  P+G+ +D     LYW D+    I  
Sbjct: 216 MYWTDWG---TPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISS 272
Query: 95  SDLAGNNREAL 105
            D+ G NR+ +
Sbjct: 273 IDVNGGNRKTI 283

>pdb|3M0C|C Chain C, The X-Ray Crystal Structure Of Pcsk9 In Complex With The Ldl Receptor Length = 791

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Query: 35  LYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIER 94
           +Y+TDWG   T  KI +  + G     ++ +++  P+G+ +D     LYW D+    I  
Sbjct: 528 MYWTDWG---TPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISS 584
Query: 95  SDLAGNNREAL 105
            D+ G NR+ +
Sbjct: 585 IDVNGGNRKTI 595

>pdb|1N7D|A Chain A, Extracellular Domain Of The Ldl Receptor Length = 699

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Query: 35  LYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIER 94
           +Y+TDWG   T  KI +  + G     ++ +++  P+G+ +D     LYW D+    I  
Sbjct: 510 MYWTDWG---TPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISS 566
Query: 95  SDLAGNNREAL 105
            D+ G NR+ +
Sbjct: 567 IDVNGGNRKTI 577

>pdb|1NPE|A Chain A, Crystal Structure Of Nidogen/laminin Complex Length = 267

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 4/74 (5%)
Query: 33  RTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKI 92
           + +Y+TD     +   I R ++ G     II +DL  P G+A+D     ++WTD+  ++I
Sbjct: 48  KVVYWTDI----SEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRI 103
Query: 93  ERSDLAGNNREALY 106
           E + + G  R  L+
Sbjct: 104 EVAKMDGTQRRVLF 117

>pdb|1IJQ|A Chain A, Crystal Structure Of The Ldl Receptor Ywtd-Egf Domain Pair Length = 316

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 3/97 (3%)
Query: 13  RSLLLQAIPGRRHFMP---PIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQ 69
           RS     IP  R+ +     +    +Y++D  +       L      S    +I +D+  
Sbjct: 19  RSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQA 78
Query: 70  PSGLAIDFDDEMLYWTDAVREKIERSDLAGNNREALY 106
           P GLA+D+    +YWTD+V   +  +D  G  R+ L+
Sbjct: 79  PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLF 115

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	109
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	3e-24
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	2e-17
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	2e-12
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	1e-08
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	3e-24
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	4e-17
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	1e-12
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	9e-09
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	4e-23
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	4e-15
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	2e-12
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	6e-08
3v65_B	386	Low-density lipoprotein receptor-related protein;	2e-22
3v65_B	386	Low-density lipoprotein receptor-related protein;	2e-14
3v65_B	386	Low-density lipoprotein receptor-related protein;	7e-14
3v65_B	386	Low-density lipoprotein receptor-related protein;	1e-08
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	4e-20
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	9e-16
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	1e-13
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	9e-10
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	2e-08
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	1e-18
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	1e-16
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	5e-15
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	5e-12
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	1e-11
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	2e-11
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	8e-10
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	1e-06
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	4e-06
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	8e-17
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	1e-13
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	1e-12
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	5e-08
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	6e-06
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	1e-16
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	1e-14
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	2e-14
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	5e-14
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	3e-13
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	6e-13
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	2e-08
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	3e-08
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	2e-05
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	3e-16
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	4e-15
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	1e-14
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	2e-06
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	1e-15
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	9e-15
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	1e-11
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	6e-08
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	2e-07
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	2e-08
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	7e-06
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	5e-04
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	9e-06
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	2e-05
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	7e-05
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	7e-05
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	9e-05
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	3e-05
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	7e-05
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	1e-04
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	4e-04
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	7e-04

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791

 Score = 94.9 bits (235), Expect = 3e-24
 Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 4/81 (4%)

Query: 29  PIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAV 88
           P+    +Y+TDWG      KI +  + G     ++ +++  P+G+ +D     LYW D+ 
Sbjct: 523 PVH-GFMYWTDWGT---PAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSK 578

Query: 89  REKIERSDLAGNNREALYLNK 109
              I   D+ G NR+ +  ++
Sbjct: 579 LHSISSIDVNGGNRKTILEDE 599

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791

 Score = 75.3 bits (184), Expect = 2e-17
 Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 5/74 (6%)

Query: 33  RTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTD-AVREK 91
             +Y+TD       G +      G  +K +  ++ S+P  + +D     +YWTD     K
Sbjct: 483 SNIYWTDSVL----GTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAK 538

Query: 92  IERSDLAGNNREAL 105
           I++  L G +  +L
Sbjct: 539 IKKGGLNGVDIYSL 552

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791

 Score = 61.0 bits (147), Expect = 2e-12
 Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 8/79 (10%)

Query: 31  RLRTLYYTDWGRFGTAGKILRTTMAG----SLKKVIIEKDLSQPSGLAIDFDDEMLYWTD 86
               +Y++D     +   I  T +      S    +I +D+  P GLA+D+    +YWTD
Sbjct: 434 ASNRIYWSDL----SQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTD 489

Query: 87  AVREKIERSDLAGNNREAL 105
           +V   +  +D  G  R+ L
Sbjct: 490 SVLGTVSVADTKGVKRKTL 508

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791

 Score = 50.2 bits (119), Expect = 1e-08
 Identities = 16/74 (21%), Positives = 32/74 (43%), Gaps = 5/74 (6%)

Query: 33  RTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKI 92
             LY+ D         I    + G  +K I+E +       ++   ++ ++WTD + E I
Sbjct: 570 GRLYWVDSKL----HSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAI 625

Query: 93  ERSD-LAGNNREAL 105
             ++ L G++   L
Sbjct: 626 FSANRLTGSDVNLL 639

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699

 Score = 94.5 bits (234), Expect = 3e-24
 Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 4/80 (5%)

Query: 29  PIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAV 88
           P+    +Y+TDWG      KI +  + G     ++ +++  P+G+ +D     LYW D+ 
Sbjct: 505 PVH-GFMYWTDWGT---PAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSK 560

Query: 89  REKIERSDLAGNNREALYLN 108
              I   D+ G NR+ +  +
Sbjct: 561 LHSISSIDVNGGNRKTILED 580

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699

 Score = 74.1 bits (181), Expect = 4e-17
 Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 5/74 (6%)

Query: 33  RTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTD-AVREK 91
             +Y+TD       G +      G  +K +  +  S+P  + +D     +YWTD     K
Sbjct: 465 SNIYWTDSVL----GTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAK 520

Query: 92  IERSDLAGNNREAL 105
           I++  L G +  +L
Sbjct: 521 IKKGGLNGVDIYSL 534

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699

 Score = 61.7 bits (149), Expect = 1e-12
 Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 8/79 (10%)

Query: 31  RLRTLYYTDWGRFGTAGKILRTTMAG----SLKKVIIEKDLSQPSGLAIDFDDEMLYWTD 86
               +Y++D     +   I  T +      S    +I +D+  P GLA+D+    +YWTD
Sbjct: 416 ASNRIYWSDL----SQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTD 471

Query: 87  AVREKIERSDLAGNNREAL 105
           +V   +  +D  G  R+ L
Sbjct: 472 SVLGTVSVADTKGVKRKTL 490

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699

 Score = 50.6 bits (120), Expect = 9e-09
 Identities = 17/77 (22%), Positives = 33/77 (42%), Gaps = 5/77 (6%)

Query: 33  RTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKI 92
             LY+ D         I    + G  +K I+E +       ++   ++ ++WTD + E I
Sbjct: 552 GRLYWVDSKL----HSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAI 607

Query: 93  ERSD-LAGNNREALYLN 108
             ++ L G++   L  N
Sbjct: 608 FSANRLTGSDVNLLAEN 624

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L Length = 400

 Score = 90.7 bits (224), Expect = 4e-23
 Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 3/77 (3%)

Query: 33  RTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKI 92
             +Y+TDWG   T  KI +  + G     ++ +++  P+G+ +D     LYW D+    I
Sbjct: 214 GFMYWTDWG---TPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSI 270

Query: 93  ERSDLAGNNREALYLNK 109
              D+ G NR+ +  ++
Sbjct: 271 SSIDVNGGNRKTILEDE 287

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L Length = 400

 Score = 68.3 bits (166), Expect = 4e-15
 Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 5/74 (6%)

Query: 33  RTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTD-AVREK 91
             +Y+TD       G +      G  +K +  ++ S+P  + +D     +YWTD     K
Sbjct: 171 SNIYWTDSVL----GTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAK 226

Query: 92  IERSDLAGNNREAL 105
           I++  L G +  +L
Sbjct: 227 IKKGGLNGVDIYSL 240

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L Length = 400

 Score = 61.0 bits (147), Expect = 2e-12
 Identities = 20/77 (25%), Positives = 36/77 (46%)

Query: 30  IRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVR 89
           +    +Y++D  +       L      S    +I +D+  P GLA+D+    +YWTD+V 
Sbjct: 121 VASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVL 180

Query: 90  EKIERSDLAGNNREALY 106
             +  +D  G  R+ L+
Sbjct: 181 GTVSVADTKGVKRKTLF 197

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L Length = 400

 Score = 47.9 bits (113), Expect = 6e-08
 Identities = 16/74 (21%), Positives = 32/74 (43%), Gaps = 5/74 (6%)

Query: 33  RTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKI 92
             LY+ D         I    + G  +K I+E +       ++   ++ ++WTD + E I
Sbjct: 258 GRLYWVDSKL----HSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAI 313

Query: 93  ERSD-LAGNNREAL 105
             ++ L G++   L
Sbjct: 314 FSANRLTGSDVNLL 327

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} Length = 386

 Score = 88.3 bits (218), Expect = 2e-22
 Identities = 28/77 (36%), Positives = 46/77 (59%), Gaps = 3/77 (3%)

Query: 33  RTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKI 92
            T+Y+TDWG      +I  ++M GS +++I +  L  P+GL ID+    +YW DA    I
Sbjct: 214 GTIYWTDWG---NTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVI 270

Query: 93  ERSDLAGNNREALYLNK 109
           ER++L G++R+A+    
Sbjct: 271 ERANLDGSHRKAVISQG 287

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} Length = 386

 Score = 66.7 bits (162), Expect = 2e-14
 Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 5/74 (6%)

Query: 33  RTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTD-AVREK 91
             LY+TD G      +I    + G+ +KV++ + L +P  +A+   +  +YWTD     +
Sbjct: 171 DKLYWTDSGT----SRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPR 226

Query: 92  IERSDLAGNNREAL 105
           IE S + G+ R  +
Sbjct: 227 IEASSMDGSGRRII 240

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} Length = 386

 Score = 64.8 bits (157), Expect = 7e-14
 Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 4/77 (5%)

Query: 30  IRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVR 89
            R   ++++D        +ILR  + GS  + ++   L  P GLA+D+  + LYWTD+  
Sbjct: 125 HRRELVFWSDVTL----DRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGT 180

Query: 90  EKIERSDLAGNNREALY 106
            +IE ++L G +R+ L 
Sbjct: 181 SRIEVANLDGAHRKVLL 197

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} Length = 386

 Score = 49.8 bits (118), Expect = 1e-08
 Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 7/74 (9%)

Query: 33  RTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKI 92
           R +Y+ D         I R  + GS +K +I + L  P  + +  D   LYWTD   + I
Sbjct: 258 RRMYWVDAKH----HVIERANLDGSHRKAVISQGLPHPFAITVFED--SLYWTDWHTKSI 311

Query: 93  ERSD-LAGNNREAL 105
             ++   G N+E +
Sbjct: 312 NSANKFTGKNQEII 325

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 Length = 267

 Score = 81.0 bits (200), Expect = 4e-20
 Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 2/74 (2%)

Query: 33  RTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKI 92
             LY+TDW R     KI  + M G+ ++++ + +L  P+GL  D     L W DA   + 
Sbjct: 134 GNLYWTDWNR--DNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRA 191

Query: 93  ERSDLAGNNREALY 106
           E  + A   R  + 
Sbjct: 192 ECLNPAQPGRRKVL 205

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 Length = 267

 Score = 69.5 bits (170), Expect = 9e-16
 Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 4/74 (5%)

Query: 33  RTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKI 92
           + +Y+TD         I R ++ G     II +DL  P G+A+D     ++WTD+  ++I
Sbjct: 48  KVVYWTDIS----EPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRI 103

Query: 93  ERSDLAGNNREALY 106
           E + + G  R  L+
Sbjct: 104 EVAKMDGTQRRVLF 117

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 Length = 267

 Score = 63.3 bits (154), Expect = 1e-13
 Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 6/75 (8%)

Query: 33  RTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVRE-- 90
           RT+++TD        +I    M G+ ++V+ +  L  P G+  D     LYWTD  R+  
Sbjct: 91  RTIFWTDSQL----DRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNP 146

Query: 91  KIERSDLAGNNREAL 105
           KIE S + G NR  L
Sbjct: 147 KIETSHMDGTNRRIL 161

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 Length = 267

 Score = 52.9 bits (127), Expect = 9e-10
 Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 1/71 (1%)

Query: 35  LYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIER 94
           L +   G+      + R TM  +  K  +        GLA D  D+++YWTD     I R
Sbjct: 4   LLFAQTGKIERLP-LERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGR 62

Query: 95  SDLAGNNREAL 105
           + L G     +
Sbjct: 63  ASLHGGEPTTI 73

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 Length = 267

 Score = 49.4 bits (118), Expect = 2e-08
 Identities = 14/75 (18%), Positives = 25/75 (33%), Gaps = 7/75 (9%)

Query: 33  RTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKI 92
             L + D G      +      A   ++ ++E  L  P  +        LY+TD     +
Sbjct: 179 SQLCWVDAGT----HRAECLNPAQPGRRKVLE-GLQYPFAVTSYGK--NLYYTDWKTNSV 231

Query: 93  ERSDLAGNNREALYL 107
              DLA +     + 
Sbjct: 232 IAMDLAISKEMDTFH 246

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* Length = 628

 Score = 78.7 bits (193), Expect = 1e-18
 Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 2/77 (2%)

Query: 33  RTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKI 92
             +Y+T+      + KI R  + G+ ++V+    LS+P  LA+D     L+W D+   +I
Sbjct: 444 GYMYFTNLQE--RSPKIERAALDGTEREVLFFSGLSKPIALALDSRLGKLFWADSDLRRI 501

Query: 93  ERSDLAGNNREALYLNK 109
           E SDL+G NR  L  + 
Sbjct: 502 ESSDLSGANRIVLEDSN 518

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* Length = 628

 Score = 72.9 bits (178), Expect = 1e-16
 Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 4/73 (5%)

Query: 33  RTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKI 92
             +Y+TD         I R  M GS  + ++E  L  P G+A+D+  + LYW D    +I
Sbjct: 49  NRIYWTDISL----KTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRI 104

Query: 93  ERSDLAGNNREAL 105
           E S L G +R+ L
Sbjct: 105 EVSKLDGQHRQVL 117

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* Length = 628

 Score = 68.3 bits (166), Expect = 5e-15
 Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 6/76 (7%)

Query: 33  RTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVRE-- 90
           R +Y+T          I  T + G    V+++ +  +P  + ++ +   +Y+T+      
Sbjct: 401 RYIYWTCEAT----NVINVTRLDGRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSP 456

Query: 91  KIERSDLAGNNREALY 106
           KIER+ L G  RE L+
Sbjct: 457 KIERAALDGTEREVLF 472

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* Length = 628

 Score = 59.8 bits (144), Expect = 5e-12
 Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 5/74 (6%)

Query: 33  RTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTD-AVREK 91
           + LY+ D G      +I  + + G  ++V++ KDL  P  LA+D  +  +YWT+   + K
Sbjct: 92  KNLYWADTGT----NRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPK 147

Query: 92  IERSDLAGNNREAL 105
           I+R+ + G+ R  L
Sbjct: 148 IDRAAMDGSERTTL 161

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* Length = 628

 Score = 58.7 bits (141), Expect = 1e-11
 Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 4/74 (5%)

Query: 33  RTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKI 92
             +Y+T+WG      KI R  M GS +  ++  ++ + +GL ID+    LYWTD     I
Sbjct: 135 GFMYWTEWGG---KPKIDRAAMDGSERTTLVP-NVGRANGLTIDYAKRRLYWTDLDTNLI 190

Query: 93  ERSDLAGNNREALY 106
           E S++ G NRE + 
Sbjct: 191 ESSNMLGLNREVIA 204

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* Length = 628

 Score = 58.3 bits (140), Expect = 2e-11
 Identities = 17/80 (21%), Positives = 29/80 (36%), Gaps = 10/80 (12%)

Query: 33  RTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDL------SQPSGLAIDFDDEMLYWTD 86
           + LY+ D  +      I +    GS    ++   +       QP  L+ID     +YWT 
Sbjct: 352 KQLYWIDSRQ----NMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTC 407

Query: 87  AVREKIERSDLAGNNREALY 106
                I  + L G +   + 
Sbjct: 408 EATNVINVTRLDGRSVGVVL 427

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* Length = 628

 Score = 53.7 bits (128), Expect = 8e-10
 Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 1/64 (1%)

Query: 43  FGTAGKILRTTMAGSLKKVIIE-KDLSQPSGLAIDFDDEMLYWTDAVREKIERSDLAGNN 101
           F     I R ++  +   V I    + + S L  D  D  +YWTD   + I R+ + G+ 
Sbjct: 11  FSRRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSA 70

Query: 102 REAL 105
            E +
Sbjct: 71  LEHV 74

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* Length = 628

 Score = 44.4 bits (104), Expect = 1e-06
 Identities = 17/70 (24%), Positives = 35/70 (50%), Gaps = 6/70 (8%)

Query: 33  RTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKI 92
             L++ D        +I  + ++G+ + V+ + ++ QP GL +  +   LYW D  ++ I
Sbjct: 489 GKLFWADSDL----RRIESSDLSGANRIVLEDSNILQPVGLTVFEN--WLYWIDKQQQMI 542

Query: 93  ERSDLAGNNR 102
           E+ D+ G   
Sbjct: 543 EKIDMTGREG 552

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* Length = 628

 Score = 42.9 bits (100), Expect = 4e-06
 Identities = 15/86 (17%), Positives = 29/86 (33%), Gaps = 2/86 (2%)

Query: 25  HFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVII--EKDLSQPSGLAIDFDDEML 82
           + +          T +  F     I R  +       II     L     +  D  D+ L
Sbjct: 295 YSLNADNRTCSAPTTFLLFSQKSAINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQL 354

Query: 83  YWTDAVREKIERSDLAGNNREALYLN 108
           YW D+ +  I ++   G+    + ++
Sbjct: 355 YWIDSRQNMIRKAQEDGSQGFTVVVS 380

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 Length = 316

 Score = 72.8 bits (178), Expect = 8e-17
 Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 3/78 (3%)

Query: 31  RLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVRE 90
               +Y+TDWG   T  KI +  + G     ++ +++  P+G+ +D     LYW D+   
Sbjct: 130 VHGFMYWTDWG---TPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLH 186

Query: 91  KIERSDLAGNNREALYLN 108
            I   D+ G NR+ +  +
Sbjct: 187 SISSIDVNGGNRKTILED 204

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 Length = 316

 Score = 63.9 bits (155), Expect = 1e-13
 Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 5/74 (6%)

Query: 33  RTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDA-VREK 91
             +Y+TD       G +      G  +K +  ++ S+P  + +D     +YWTD     K
Sbjct: 89  SNIYWTDSVL----GTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAK 144

Query: 92  IERSDLAGNNREAL 105
           I++  L G +  +L
Sbjct: 145 IKKGGLNGVDIYSL 158

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 Length = 316

 Score = 61.2 bits (148), Expect = 1e-12
 Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 8/78 (10%)

Query: 33  RTLYYTDWGRFGTAGKILRTTMAG----SLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAV 88
             +Y++D  +      I  T +      S    +I +D+  P GLA+D+    +YWTD+V
Sbjct: 42  NRIYWSDLSQ----RMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSV 97

Query: 89  REKIERSDLAGNNREALY 106
              +  +D  G  R+ L+
Sbjct: 98  LGTVSVADTKGVKRKTLF 115

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 Length = 316

 Score = 48.1 bits (114), Expect = 5e-08
 Identities = 11/59 (18%), Positives = 23/59 (38%), Gaps = 1/59 (1%)

Query: 43  FGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIERSDLAGNN 101
           F    ++ + T+  S    +I  +L     L  +     +YW+D  +  I  + L   +
Sbjct: 6   FTNRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAH 63

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 Length = 316

 Score = 42.3 bits (99), Expect = 6e-06
 Identities = 15/74 (20%), Positives = 31/74 (41%), Gaps = 5/74 (6%)

Query: 33  RTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKI 92
             LY+ D         I    + G  +K I+E +       ++   ++ ++WTD + E I
Sbjct: 176 GRLYWVDSKLH----SISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAI 231

Query: 93  ERSDLA-GNNREAL 105
             ++   G++   L
Sbjct: 232 FSANRLTGSDVNLL 245

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} Length = 619

 Score = 73.3 bits (179), Expect = 1e-16
 Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 3/77 (3%)

Query: 33  RTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKI 92
             +Y+TDWG      KI R  + GS + V++   L  P+GLA+D+D+  +YW DA  +KI
Sbjct: 447 GYMYWTDWGE---IPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKI 503

Query: 93  ERSDLAGNNREALYLNK 109
           E  +  G  R  L  +K
Sbjct: 504 EVMNTDGTGRRVLVEDK 520

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} Length = 619

 Score = 67.5 bits (164), Expect = 1e-14
 Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 5/75 (6%)

Query: 33  RTLYYTDWGRFGTAGKILRTTMAGS-LKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREK 91
             +Y++D         I RT    +   + ++   L  P GLA D+  E LYWTD+   +
Sbjct: 52  GLIYWSDVSE----EAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNR 107

Query: 92  IERSDLAGNNREALY 106
           IE S+L G+ R+ L+
Sbjct: 108 IEVSNLDGSLRKVLF 122

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} Length = 619

 Score = 66.8 bits (162), Expect = 2e-14
 Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 3/71 (4%)

Query: 33  RTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKI 92
             +Y+TDWG      KI R  M GS + +II  ++  P+GL +D++++ LYW DA    I
Sbjct: 139 GFMYWTDWG---EVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFI 195

Query: 93  ERSDLAGNNRE 103
            +S+L G NR+
Sbjct: 196 HKSNLDGTNRQ 206

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} Length = 619

 Score = 65.6 bits (159), Expect = 5e-14
 Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 4/76 (5%)

Query: 33  RTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKI 92
             +Y+TD         I R+ + GS  + ++   ++ P G+A+D+    LYWTD   ++I
Sbjct: 361 GYIYWTDDEV----RAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRI 416

Query: 93  ERSDLAGNNREALYLN 108
           E + L G  R+ L   
Sbjct: 417 EVTRLNGTMRKILISE 432

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} Length = 619

 Score = 63.3 bits (153), Expect = 3e-13
 Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 5/74 (6%)

Query: 33  RTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVRE-K 91
           R LY+TD G      +I  T + G+++K++I +DL +P  + +D     +YWTD     K
Sbjct: 404 RNLYWTDTGT----DRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPK 459

Query: 92  IERSDLAGNNREAL 105
           IER+ L G++R  L
Sbjct: 460 IERAALDGSDRVVL 473

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} Length = 619

 Score = 62.5 bits (151), Expect = 6e-13
 Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 5/74 (6%)

Query: 33  RTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDA-VREK 91
             LY+TD        +I  + + GSL+KV+  ++L QP  +A+D     +YWTD     K
Sbjct: 96  EKLYWTDSET----NRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPK 151

Query: 92  IERSDLAGNNREAL 105
           IER+ + G++R  +
Sbjct: 152 IERAGMDGSSRFII 165

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} Length = 619

 Score = 49.0 bits (116), Expect = 2e-08
 Identities = 10/61 (16%), Positives = 21/61 (34%), Gaps = 1/61 (1%)

Query: 43  FGTAGKILRTTMA-GSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIERSDLAGNN 101
           +     +       G     I+   L   + +   F   ++YW+D   E I+R++     
Sbjct: 14  YANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTE 73

Query: 102 R 102
            
Sbjct: 74  S 74

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} Length = 619

 Score = 49.0 bits (116), Expect = 3e-08
 Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 6/73 (8%)

Query: 33  RTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKI 92
             +Y+ D        KI      G+ ++V++E  +    G  +  D   +YWTD  R  I
Sbjct: 491 GKIYWGDAKT----DKIEVMNTDGTGRRVLVEDKIPHIFGFTLLGDY--VYWTDWQRRSI 544

Query: 93  ERSDLAGNNREAL 105
           ER       RE +
Sbjct: 545 ERVHKRSAEREVI 557

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} Length = 619

 Score = 41.3 bits (96), Expect = 2e-05
 Identities = 10/40 (25%), Positives = 18/40 (45%)

Query: 66  DLSQPSGLAIDFDDEMLYWTDAVREKIERSDLAGNNREAL 105
           D+     +  D  +  +YWTD     I RS + G+  + +
Sbjct: 347 DIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFV 386

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} Length = 349

 Score = 71.4 bits (174), Expect = 3e-16
 Identities = 28/77 (36%), Positives = 46/77 (59%), Gaps = 3/77 (3%)

Query: 33  RTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKI 92
            T+Y+TDWG      +I  ++M GS +++I +  L  P+GL ID+    +YW DA    I
Sbjct: 171 GTIYWTDWG---NTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVI 227

Query: 93  ERSDLAGNNREALYLNK 109
           ER++L G++R+A+    
Sbjct: 228 ERANLDGSHRKAVISQG 244

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} Length = 349

 Score = 68.4 bits (166), Expect = 4e-15
 Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 4/74 (5%)

Query: 33  RTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKI 92
             ++++D        +ILR  + GS  + ++   L  P GLA+D+  + LYWTD+   +I
Sbjct: 85  ELVFWSDVTL----DRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRI 140

Query: 93  ERSDLAGNNREALY 106
           E ++L G +R+ L 
Sbjct: 141 EVANLDGAHRKVLL 154

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} Length = 349

 Score = 67.2 bits (163), Expect = 1e-14
 Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 5/75 (6%)

Query: 33  RTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTD-AVREK 91
             LY+TD G      +I    + G+ +KV++ + L +P  +A+   +  +YWTD     +
Sbjct: 128 DKLYWTDSGT----SRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPR 183

Query: 92  IERSDLAGNNREALY 106
           IE S + G+ R  + 
Sbjct: 184 IEASSMDGSGRRIIA 198

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} Length = 349

 Score = 43.7 bits (102), Expect = 2e-06
 Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 7/74 (9%)

Query: 33  RTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKI 92
           R +Y+ D         I R  + GS +K +I + L  P  + +  D   LYWTD   + I
Sbjct: 215 RRMYWVDAKH----HVIERANLDGSHRKAVISQGLPHPFAITVFED--SLYWTDWHTKSI 268

Query: 93  ERSDLA-GNNREAL 105
             ++   G N+E +
Sbjct: 269 NSANKFTGKNQEII 282

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B Length = 318

 Score = 69.7 bits (170), Expect = 1e-15
 Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 3/70 (4%)

Query: 33  RTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKI 92
             +Y+TDWG      KI R  M GS + +II  ++  P+GL +D++++ LYW DA    I
Sbjct: 134 GFMYWTDWGE---VPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFI 190

Query: 93  ERSDLAGNNR 102
            +S+L G NR
Sbjct: 191 HKSNLDGTNR 200

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B Length = 318

 Score = 67.0 bits (163), Expect = 9e-15
 Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 5/75 (6%)

Query: 33  RTLYYTDWGRFGTAGKILRTTMAGS-LKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREK 91
             +Y++D         I RT    +   + ++   L  P GLA D+  E LYWTD+   +
Sbjct: 47  GLIYWSDVSE----EAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNR 102

Query: 92  IERSDLAGNNREALY 106
           IE S+L G+ R+ L+
Sbjct: 103 IEVSNLDGSLRKVLF 117

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B Length = 318

 Score = 58.2 bits (140), Expect = 1e-11
 Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 5/74 (6%)

Query: 33  RTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDA-VREK 91
             LY+TD        +I  + + GSL+KV+  ++L QP  +A+D     +YWTD     K
Sbjct: 91  EKLYWTDSET----NRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPK 146

Query: 92  IERSDLAGNNREAL 105
           IER+ + G++R  +
Sbjct: 147 IERAGMDGSSRFII 160

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B Length = 318

 Score = 47.8 bits (113), Expect = 6e-08
 Identities = 10/61 (16%), Positives = 21/61 (34%), Gaps = 1/61 (1%)

Query: 43  FGTAGKILRTTMA-GSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIERSDLAGNN 101
           +     +       G     I+   L   + +   F   ++YW+D   E I+R++     
Sbjct: 9   YANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTE 68

Query: 102 R 102
            
Sbjct: 69  S 69

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B Length = 318

 Score = 46.2 bits (109), Expect = 2e-07
 Identities = 16/74 (21%), Positives = 31/74 (41%), Gaps = 7/74 (9%)

Query: 34  TLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIE 93
            LY+ D         I ++ + G+ ++ +++  L  P  L +  D  +LYWTD     I 
Sbjct: 179 KLYWADAKL----NFIHKSNLDGTNRQAVVKGSLPHPFALTLFED--ILYWTDWSTHSIL 232

Query: 94  RSDLA-GNNREALY 106
             +   G     ++
Sbjct: 233 ACNKYTGEGLREIH 246

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} Length = 302

 Score = 49.3 bits (117), Expect = 2e-08
 Identities = 10/74 (13%), Positives = 21/74 (28%), Gaps = 7/74 (9%)

Query: 33  RTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKI 92
             +YY D  R      I+   +      V+ E ++   +     +   + Y        +
Sbjct: 196 TNVYYMDVNR---DNAIVHVNINNPNPVVLTEANIEHYNV----YGSLIFYQRGGDNPAL 248

Query: 93  ERSDLAGNNREALY 106
                 G   + L 
Sbjct: 249 CVVKNDGTGFKELA 262

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} Length = 302

 Score = 42.0 bits (98), Expect = 7e-06
 Identities = 15/74 (20%), Positives = 29/74 (39%), Gaps = 9/74 (12%)

Query: 33  RTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVRE-K 91
           R  YY +       G++ R   A   + +  + +  +P    +  DD  +Y+ D  R+  
Sbjct: 157 RYFYYNNPKN----GQLYRYDTASQSEALFYDCNCYKP----VVLDDTNVYYMDVNRDNA 208

Query: 92  IERSDLAGNNREAL 105
           I   ++   N   L
Sbjct: 209 IVHVNINNPNPVVL 222

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} Length = 302

 Score = 37.0 bits (85), Expect = 5e-04
 Identities = 15/73 (20%), Positives = 25/73 (34%), Gaps = 6/73 (8%)

Query: 34  TLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIE 93
            +YY  +    TA  + R  + G  KK I             +  D   Y+ +    ++ 
Sbjct: 117 YIYYLHYDT-QTATSLYRIRIDGEEKKKIKN-----HYLFTCNTSDRYFYYNNPKNGQLY 170

Query: 94  RSDLAGNNREALY 106
           R D A  +    Y
Sbjct: 171 RYDTASQSEALFY 183

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299

 Score = 41.9 bits (99), Expect = 9e-06
 Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 5/70 (7%)

Query: 34  TLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIE 93
            L++T+         I R T +G + +  I    S P G+    DD  L++ + +  KI 
Sbjct: 153 ALWFTENQ----NNAIGRITESGDITEFKIPTPASGPVGITKGNDDA-LWFVEIIGNKIG 207

Query: 94  RSDLAGNNRE 103
           R   +G   E
Sbjct: 208 RITTSGEITE 217

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299

 Score = 40.8 bits (96), Expect = 2e-05
 Identities = 15/70 (21%), Positives = 32/70 (45%), Gaps = 5/70 (7%)

Query: 34  TLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIE 93
            +++T+        +I R T  G +++  +    S PS + +  D+  L++T+     I 
Sbjct: 111 DIWFTEMN----GNRIGRITDDGKIREYELPNKGSYPSFITLGSDNA-LWFTENQNNAIG 165

Query: 94  RSDLAGNNRE 103
           R   +G+  E
Sbjct: 166 RITESGDITE 175

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299

 Score = 39.2 bits (92), Expect = 7e-05
 Identities = 14/70 (20%), Positives = 27/70 (38%), Gaps = 5/70 (7%)

Query: 34  TLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIE 93
            L++ +        KI R T +G + +  I    ++P  +      + L++T+    KI 
Sbjct: 195 ALWFVEII----GNKIGRITTSGEITEFKIPTPNARPHAITAGAGID-LWFTEWGANKIG 249

Query: 94  RSDLAGNNRE 103
           R        E
Sbjct: 250 RLTSNNIIEE 259

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299

 Score = 39.2 bits (92), Expect = 7e-05
 Identities = 14/70 (20%), Positives = 27/70 (38%), Gaps = 5/70 (7%)

Query: 34  TLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIE 93
            ++ T       A  I    + G + +  +    ++   L I  D E +++T+    KI 
Sbjct: 27  KVWITQHK----ANMISCINLDGKITEYPLPTPDAKVMCLTISSDGE-VWFTENAANKIG 81

Query: 94  RSDLAGNNRE 103
           R    G  +E
Sbjct: 82  RITKKGIIKE 91

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299

 Score = 38.8 bits (91), Expect = 9e-05
 Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 5/70 (7%)

Query: 34  TLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIE 93
            +++T+      A KI R T  G +K+  +    S P G+    + + +++T+    +I 
Sbjct: 69  EVWFTENA----ANKIGRITKKGIIKEYTLPNPDSAPYGITEGPNGD-IWFTEMNGNRIG 123

Query: 94  RSDLAGNNRE 103
           R    G  RE
Sbjct: 124 RITDDGKIRE 133

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300

 Score = 40.0 bits (94), Expect = 3e-05
 Identities = 13/70 (18%), Positives = 28/70 (40%), Gaps = 5/70 (7%)

Query: 34  TLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIE 93
            +++T         +I + T  G++ +  +    S P+ + +   D  L++T+     I 
Sbjct: 116 DIWFTQLN----GDRIGKLTADGTIYEYDLPNKGSYPAFITLG-SDNALWFTENQNNSIG 170

Query: 94  RSDLAGNNRE 103
           R    G   E
Sbjct: 171 RITNTGKLEE 180

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300

 Score = 39.2 bits (92), Expect = 7e-05
 Identities = 12/70 (17%), Positives = 28/70 (40%), Gaps = 5/70 (7%)

Query: 34  TLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIE 93
            +++T       A KI     +G +K+  +    ++   L +    + +++T+    KI 
Sbjct: 32  KVWFTQHK----ANKISSLDQSGRIKEFEVPTPDAKVMCLIVSSLGD-IWFTENGANKIG 86

Query: 94  RSDLAGNNRE 103
           +    G   E
Sbjct: 87  KLSKKGGFTE 96

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300

 Score = 38.4 bits (90), Expect = 1e-04
 Identities = 16/70 (22%), Positives = 29/70 (41%), Gaps = 5/70 (7%)

Query: 34  TLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIE 93
            L++T+         I R T  G L++  +  + + P G+    D   L++ + +  KI 
Sbjct: 158 ALWFTENQ----NNSIGRITNTGKLEEYPLPTNAAAPVGITSGNDGA-LWFVEIMGNKIG 212

Query: 94  RSDLAGNNRE 103
           R    G   E
Sbjct: 213 RITTTGEISE 222

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300

 Score = 36.9 bits (86), Expect = 4e-04
 Identities = 13/70 (18%), Positives = 31/70 (44%), Gaps = 5/70 (7%)

Query: 34  TLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIE 93
            +++T+ G    A KI + +  G   +  + +  S P G+    + + +++T    ++I 
Sbjct: 74  DIWFTENG----ANKIGKLSKKGGFTEYPLPQPDSGPYGITEGLNGD-IWFTQLNGDRIG 128

Query: 94  RSDLAGNNRE 103
           +    G   E
Sbjct: 129 KLTADGTIYE 138

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300

 Score = 36.5 bits (85), Expect = 7e-04
 Identities = 10/53 (18%), Positives = 28/53 (52%), Gaps = 5/53 (9%)

Query: 34  TLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTD 86
            +++T+WG    A +I R T   ++++  ++ + ++P G+    D   +++  
Sbjct: 242 EIWFTEWG----ANQIGRITNDNTIQEYQLQTENAEPHGITFGKDGS-VWFAL 289

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	109
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	99.91
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	99.91
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	99.9
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	99.9
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	99.9
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	99.89
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	99.89
3v65_B	386	Low-density lipoprotein receptor-related protein;	99.88
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	99.88
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	99.88
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	99.84
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	99.84
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	99.83
3v65_B	386	Low-density lipoprotein receptor-related protein;	99.83
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	99.82
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	99.81
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	99.81
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.73
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.72
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	99.67
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	99.55
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	99.48
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.21
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	99.19
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.1
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	99.09
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	99.01
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.0
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.96
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	98.95
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.92
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.81
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	98.78
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	98.78
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	98.78
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	98.71
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.7
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	98.64
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	98.62
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	98.6
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	98.59
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.59
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	98.54
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.52
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	98.46
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	98.44
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	98.42
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.41
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.37
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.36
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.32
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	98.31
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	98.28
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	98.24
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	98.21
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	98.2
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	98.19
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	98.15
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	98.13
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.13
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.13
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	98.12
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	98.04
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.04
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	98.03
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	98.02
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	97.92
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	97.91
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	97.91
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.83
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	97.8
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	97.77
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	97.75
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	97.72
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	97.65
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.51
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	97.51
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	97.48
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	97.46
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	97.43
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	97.4
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	97.38
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	97.37
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	97.3
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.23
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	97.22
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	97.21
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	97.18
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.16
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	97.12
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	97.08
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	97.05
2ece_A	462	462AA long hypothetical selenium-binding protein;	96.97
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	96.9
4a9v_A	592	PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona	96.87
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	96.77
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	96.72
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	96.69
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	96.66
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	96.65
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	96.64
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	96.63
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	96.6
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	96.59
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	96.59
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	96.46
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	96.39
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	96.21
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	96.16
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	95.8
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	95.77
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	95.76
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	95.75
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	95.66
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	95.53
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	95.51
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	95.5
4a9v_A	592	PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona	95.5
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	95.37
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	95.37
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	95.34
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	95.31
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	95.25
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	95.16
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	95.15
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	95.01
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	95.01
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	94.95
2ece_A	462	462AA long hypothetical selenium-binding protein;	94.61
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	94.35
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	93.87
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	93.77
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	93.64
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	93.45
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	93.3
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	93.12
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	92.8
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	91.49
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	91.47
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	91.45
1k32_A	1045	Tricorn protease; protein degradation, substrate g	91.23
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	90.89
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	90.61
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	89.56
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	89.15
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	87.94
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	86.56
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	85.98
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	84.84
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	84.39
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	83.83
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	81.96
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	81.69

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=99.91  E-value=7.1e-24  Score=162.27  Aligned_cols=102  Identities=27%  Similarity=0.360  Sum_probs=94.4

Q ss_pred             eeecCCCCCccEEEe-cCCCCcceEEeeCCCCeEEEEecCCCCCCC-eEEEEEcCCCCcEEEEeCCCCCceeEEEecCCC
Q psy959            3 STDKDLLKTHRSLLL-QAIPGRRHFMPPIRLRTLYYTDWGRFGTAG-KILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDE   80 (109)
Q Consensus         3 ~~~~~l~G~~~~~li-~~l~~p~~iavd~~~g~lywsd~~~~~~~~-~I~~~~~dG~~~~~l~~~~~~~p~glaiD~~~~   80 (109)
                      +..++++|+.+++++ .++..|++||+||.+|+|||+|++.   .+ +|++++|||+.+++++...+.+|+|||+|+.++
T Consensus       413 I~v~~~~G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~---~~~~I~r~~~dG~~~~~l~~~~l~~P~gla~D~~~~  489 (628)
T 4a0p_A          413 INVTRLDGRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQE---RSPKIERAALDGTEREVLFFSGLSKPIALALDSRLG  489 (628)
T ss_dssp             EEEEETTSCEEEEEEECTTCCEEEEEEETTTTEEEEEEEET---TEEEEEEEETTSCSCEEEECSSCSCEEEEEEETTTT
T ss_pred             EEEEECCCCeEEEEEeCCCCceeeEEEecCCCeEEEeecCC---CCCeEEEEeCCCCCcEEEEeccCCCccEEEEeCCCC
Confidence            456789999998888 5799999999999999999999984   33 899999999999999998899999999999999


Q ss_pred             eEEEEeCCCCeEEEEeCCCCCeEEEEe
Q psy959           81 MLYWTDAVREKIERSDLAGNNREALYL  107 (109)
Q Consensus        81 ~lYw~D~~~~~I~~~~~dG~~~~~l~~  107 (109)
                      +|||+|...++|+++++||++++++.+
T Consensus       490 ~LYw~D~~~~~I~~~~~dG~~r~~~~~  516 (628)
T 4a0p_A          490 KLFWADSDLRRIESSDLSGANRIVLED  516 (628)
T ss_dssp             EEEEEETTTTEEEEEETTSCSCEEEEC
T ss_pred             EEEEEeCCCCEEEEEeCCCCceEEEEc
Confidence            999999999999999999999999875

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=99.91  E-value=1.6e-23  Score=160.10  Aligned_cols=103  Identities=32%  Similarity=0.571  Sum_probs=95.5

Q ss_pred             eeecCCCCCccEEEe-cCCCCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCCcEEEEeCCCCCceeEEEecCCCe
Q psy959            3 STDKDLLKTHRSLLL-QAIPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEM   81 (109)
Q Consensus         3 ~~~~~l~G~~~~~li-~~l~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glaiD~~~~~   81 (109)
                      +..++++|+.+++|+ .++..|++||+||.+|+|||+|++.   .++|+++.|||+.+++++...+.+|+|||+|+.+++
T Consensus       416 I~v~~~~G~~~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~---~~~I~r~~~dG~~~~~l~~~~l~~P~GlalD~~~~~  492 (619)
T 3s94_A          416 IEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGE---IPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGK  492 (619)
T ss_dssp             EEEEETTSCSCEEEECTTCCSEEEEEEETTTTEEEEEECSS---SCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTE
T ss_pred             EEEEeCCCCeEEEEEECCCCCeeeEEEEcCCCcEEEecCCC---CCEEEEEccCCCccEEEEeCCCCCCeeeEEcccCCE
Confidence            456789999999998 6899999999999999999999984   589999999999999999888999999999999999


Q ss_pred             EEEEeCCCCeEEEEeCCCCCeEEEEeC
Q psy959           82 LYWTDAVREKIERSDLAGNNREALYLN  108 (109)
Q Consensus        82 lYw~D~~~~~I~~~~~dG~~~~~l~~~  108 (109)
                      |||+|...++|+++++||+.+++++.+
T Consensus       493 LY~aD~~~~~I~~~~~dG~~~~~~~~~  519 (619)
T 3s94_A          493 IYWGDAKTDKIEVMNTDGTGRRVLVED  519 (619)
T ss_dssp             EEEEETTTTEEEEEESSSCCCEEEEEC
T ss_pred             EEEEECCCCEEEEEecCCCceEEEecc
Confidence            999999999999999999999998753

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=99.90  E-value=8.1e-23  Score=148.96  Aligned_cols=103  Identities=23%  Similarity=0.431  Sum_probs=95.1

Q ss_pred             eeecCCCCCccEEEe-cCCCCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCCcEEEEeCCCCCceeEEEecCCCe
Q psy959            3 STDKDLLKTHRSLLL-QAIPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEM   81 (109)
Q Consensus         3 ~~~~~l~G~~~~~li-~~l~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glaiD~~~~~   81 (109)
                      +..++++|+.+++++ ..+..|++||+||..|+|||+|++.   .++|+++++||+.+++++...+.+|+|||+|+.+++
T Consensus       183 I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~---~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~  259 (400)
T 3p5b_L          183 VSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGT---PAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGR  259 (400)
T ss_dssp             EEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSS---SCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTE
T ss_pred             EEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCC---CCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCE
Confidence            346789999999998 5899999999999999999999874   589999999999999999888999999999999999


Q ss_pred             EEEEeCCCCeEEEEeCCCCCeEEEEeC
Q psy959           82 LYWTDAVREKIERSDLAGNNREALYLN  108 (109)
Q Consensus        82 lYw~D~~~~~I~~~~~dG~~~~~l~~~  108 (109)
                      |||+|...++|+++++||+++++++..
T Consensus       260 lY~aD~~~~~I~~~d~dG~~~~~~~~~  286 (400)
T 3p5b_L          260 LYWVDSKLHSISSIDVNGGNRKTILED  286 (400)
T ss_dssp             EEEEETTTTEEEEEETTSCCCEEEEEC
T ss_pred             EEEEECCCCEEEEEeCCCCccEEEEeC
Confidence            999999999999999999999998753

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=99.90  E-value=8.9e-23  Score=159.56  Aligned_cols=103  Identities=23%  Similarity=0.431  Sum_probs=95.5

Q ss_pred             eeecCCCCCccEEEe-cCCCCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCCcEEEEeCCCCCceeEEEecCCCe
Q psy959            3 STDKDLLKTHRSLLL-QAIPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEM   81 (109)
Q Consensus         3 ~~~~~l~G~~~~~li-~~l~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glaiD~~~~~   81 (109)
                      +..++++|+.+++|+ ..+..|++|||||..|+|||+|++.   .++|++++|||+.+++++...+.+|+|||||+.+++
T Consensus       495 I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~---~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~  571 (791)
T 3m0c_C          495 VSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGT---PAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGR  571 (791)
T ss_dssp             EEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSS---SCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTE
T ss_pred             EEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCC---CCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCe
Confidence            456789999999998 6899999999999999999999983   489999999999999999988999999999999999


Q ss_pred             EEEEeCCCCeEEEEeCCCCCeEEEEeC
Q psy959           82 LYWTDAVREKIERSDLAGNNREALYLN  108 (109)
Q Consensus        82 lYw~D~~~~~I~~~~~dG~~~~~l~~~  108 (109)
                      |||+|...++|++++++|+.++++++.
T Consensus       572 LYwaD~~~~~I~~~d~dG~~~~~v~~~  598 (791)
T 3m0c_C          572 LYWVDSKLHSISSIDVNGGNRKTILED  598 (791)
T ss_dssp             EEEEETTTTEEEEEETTSCSCEEEEEC
T ss_pred             EEEEeCCCCcEEEEecCCCceEEEecC
Confidence            999999999999999999999999864

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=99.90  E-value=1.3e-22  Score=144.19  Aligned_cols=102  Identities=33%  Similarity=0.578  Sum_probs=94.2

Q ss_pred             eeecCCCCCccEEEe-cCCCCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCCcEEEEeCCCCCceeEEEecCCCe
Q psy959            3 STDKDLLKTHRSLLL-QAIPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEM   81 (109)
Q Consensus         3 ~~~~~l~G~~~~~li-~~l~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glaiD~~~~~   81 (109)
                      +..++++|+.+++++ ..+..|++||+||..|+|||+|++.   .++|+++++||+.+++++...+..|+|||+|+.+++
T Consensus       103 I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~---~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~  179 (318)
T 3sov_A          103 IEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGE---VPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQK  179 (318)
T ss_dssp             EEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSS---SCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTE
T ss_pred             EEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCC---CCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCE
Confidence            345788999999988 6899999999999999999999863   689999999999999998888999999999999999


Q ss_pred             EEEEeCCCCeEEEEeCCCCCeEEEEe
Q psy959           82 LYWTDAVREKIERSDLAGNNREALYL  107 (109)
Q Consensus        82 lYw~D~~~~~I~~~~~dG~~~~~l~~  107 (109)
                      |||+|...++|+++++||++++++++
T Consensus       180 lY~aD~~~~~I~~~d~dG~~~~~~~~  205 (318)
T 3sov_A          180 LYWADAKLNFIHKSNLDGTNRQAVVK  205 (318)
T ss_dssp             EEEEETTTTEEEEEETTSCSCEEEEC
T ss_pred             EEEEECCCCEEEEEcCCCCceEEEec
Confidence            99999999999999999999999875

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=99.89  E-value=2.7e-22  Score=143.81  Aligned_cols=103  Identities=34%  Similarity=0.596  Sum_probs=93.9

Q ss_pred             eeecCCCCCccEEEe-cCCCCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCCcEEEEeCCCCCceeEEEecCCCe
Q psy959            3 STDKDLLKTHRSLLL-QAIPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEM   81 (109)
Q Consensus         3 ~~~~~l~G~~~~~li-~~l~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glaiD~~~~~   81 (109)
                      +..++++|+.+++++ ..+..|++||+||..|+|||+|++.   .++|+++++||+.+++++...+..|+|||+|+.+++
T Consensus       140 I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~---~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~  216 (349)
T 3v64_C          140 IEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGN---TPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRR  216 (349)
T ss_dssp             EEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSS---SCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTE
T ss_pred             EEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCC---CCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCE
Confidence            345788999998888 5789999999999999999999983   399999999999999988888999999999999999


Q ss_pred             EEEEeCCCCeEEEEeCCCCCeEEEEeC
Q psy959           82 LYWTDAVREKIERSDLAGNNREALYLN  108 (109)
Q Consensus        82 lYw~D~~~~~I~~~~~dG~~~~~l~~~  108 (109)
                      |||+|...++|+++++||+++++++..
T Consensus       217 lY~aD~~~~~I~~~~~dG~~~~~~~~~  243 (349)
T 3v64_C          217 MYWVDAKHHVIERANLDGSHRKAVISQ  243 (349)
T ss_dssp             EEEEETTTTEEEEEETTSCSCEEEECS
T ss_pred             EEEEECCCCEEEEEeCCCCceEEEEeC
Confidence            999999999999999999999888753

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=99.89  E-value=2.3e-22  Score=153.68  Aligned_cols=102  Identities=33%  Similarity=0.578  Sum_probs=92.2

Q ss_pred             eeecCCCCCccEEEe-cCCCCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCCcEEEEeCCCCCceeEEEecCCCe
Q psy959            3 STDKDLLKTHRSLLL-QAIPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEM   81 (109)
Q Consensus         3 ~~~~~l~G~~~~~li-~~l~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glaiD~~~~~   81 (109)
                      +..++++|+.+++++ ..+..|++||+||..|+|||||++.   .++|+++.|||+.+++++...+.+|+|||+|+.+++
T Consensus       108 I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~---~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~  184 (619)
T 3s94_A          108 IEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGE---VPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQK  184 (619)
T ss_dssp             EEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSS---SCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTE
T ss_pred             EEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCC---CCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCE
Confidence            456789999999998 7899999999999999999999984   689999999999999999888999999999999999


Q ss_pred             EEEEeCCCCeEEEEeCCCCCeEEEEe
Q psy959           82 LYWTDAVREKIERSDLAGNNREALYL  107 (109)
Q Consensus        82 lYw~D~~~~~I~~~~~dG~~~~~l~~  107 (109)
                      |||+|...++|+++++||+.+++++.
T Consensus       185 LY~aD~~~~~I~~~~~dG~~~~~~~~  210 (619)
T 3s94_A          185 LYWADAKLNFIHKSNLDGTNRQAVVK  210 (619)
T ss_dssp             EEEEETTTCCEEEESSSCCEEC----
T ss_pred             EEEEeCCCCeEEEecCCCCccEEEEe
Confidence            99999999999999999999988765

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=99.88  E-value=1.1e-21  Score=142.21  Aligned_cols=103  Identities=34%  Similarity=0.596  Sum_probs=94.1

Q ss_pred             eeecCCCCCccEEEe-cCCCCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCCcEEEEeCCCCCceeEEEecCCCe
Q psy959            3 STDKDLLKTHRSLLL-QAIPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEM   81 (109)
Q Consensus         3 ~~~~~l~G~~~~~li-~~l~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glaiD~~~~~   81 (109)
                      +..++++|+.+++++ .++..|++||+||..|+|||+|++.   .++|+++++||+.+++++...+..|+|||+|+.+++
T Consensus       183 I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~---~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~  259 (386)
T 3v65_B          183 IEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGN---TPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRR  259 (386)
T ss_dssp             EEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSS---SCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTE
T ss_pred             EEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCC---CCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCE
Confidence            345788999998888 5789999999999999999999983   389999999999999999888999999999999999


Q ss_pred             EEEEeCCCCeEEEEeCCCCCeEEEEeC
Q psy959           82 LYWTDAVREKIERSDLAGNNREALYLN  108 (109)
Q Consensus        82 lYw~D~~~~~I~~~~~dG~~~~~l~~~  108 (109)
                      |||+|...++|+++++||+++++++..
T Consensus       260 lY~aD~~~~~I~~~d~dG~~~~~~~~~  286 (386)
T 3v65_B          260 MYWVDAKHHVIERANLDGSHRKAVISQ  286 (386)
T ss_dssp             EEEEETTTTEEEEECTTSCSCEEEECS
T ss_pred             EEEEECCCCEEEEEeCCCCeeEEEEEC
Confidence            999999999999999999999888753

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=99.88  E-value=2.4e-21  Score=136.92  Aligned_cols=101  Identities=24%  Similarity=0.434  Sum_probs=92.4

Q ss_pred             eecCCCCCccEEEec-CCCCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCCcEEEEeCCCCCceeEEEecCCCeE
Q psy959            4 TDKDLLKTHRSLLLQ-AIPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEML   82 (109)
Q Consensus         4 ~~~~l~G~~~~~li~-~l~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glaiD~~~~~l   82 (109)
                      ...+++|+.+++++. .+..|++|++||..|+|||+|++.   .++|+++++||+.++++....+..|+|||+|+.+++|
T Consensus       102 ~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~---~~~I~~~~~dG~~~~~~~~~~~~~P~gla~d~~~~~l  178 (316)
T 1ijq_A          102 SVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGT---PAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRL  178 (316)
T ss_dssp             EEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSS---SCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEE
T ss_pred             EEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCC---CCeEEEEcCCCCCeEEEEECCCCCceEEEEeccCCEE
Confidence            456789999888884 789999999999999999999872   4899999999999999887789999999999999999


Q ss_pred             EEEeCCCCeEEEEeCCCCCeEEEEe
Q psy959           83 YWTDAVREKIERSDLAGNNREALYL  107 (109)
Q Consensus        83 Yw~D~~~~~I~~~~~dG~~~~~l~~  107 (109)
                      ||+|...++|++++++|+++++++.
T Consensus       179 Y~~D~~~~~I~~~d~dg~~~~~~~~  203 (316)
T 1ijq_A          179 YWVDSKLHSISSIDVNGGNRKTILE  203 (316)
T ss_dssp             EEEETTTTEEEEEETTSCSCEEEEE
T ss_pred             EEEECCCCeEEEEecCCCceEEEee
Confidence            9999999999999999999998875

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=99.88  E-value=1.7e-21  Score=149.10  Aligned_cols=101  Identities=31%  Similarity=0.524  Sum_probs=92.5

Q ss_pred             eeecCCCCCccEEEe-cCCCCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCCcEEEEeCCCCCceeEEEecCCCe
Q psy959            3 STDKDLLKTHRSLLL-QAIPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEM   81 (109)
Q Consensus         3 ~~~~~l~G~~~~~li-~~l~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glaiD~~~~~   81 (109)
                      +..++++|+.+++++ ..+..|++||+||..|+|||+|++.   .++|++++|||+.+++++. .+.+|+|||+|+.+++
T Consensus       104 I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~---~~~I~r~~~dG~~~~~l~~-~~~~P~GlalD~~~~~  179 (628)
T 4a0p_A          104 IEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGG---KPKIDRAAMDGSERTTLVP-NVGRANGLTIDYAKRR  179 (628)
T ss_dssp             EEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSS---SCEEEEEETTSCSCEEEEC-SCSSEEEEEEETTTTE
T ss_pred             EEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCC---CCEEEEEeCCCCceEEEEC-CCCCcceEEEccccCE
Confidence            456789999999998 7899999999999999999999874   6899999999999999885 7899999999999999


Q ss_pred             EEEEeCCCCeEEEEeCCCCCeEEEEe
Q psy959           82 LYWTDAVREKIERSDLAGNNREALYL  107 (109)
Q Consensus        82 lYw~D~~~~~I~~~~~dG~~~~~l~~  107 (109)
                      |||+|...++|++++++|+.++++..
T Consensus       180 LY~aD~~~~~I~~~d~dG~~~~v~~~  205 (628)
T 4a0p_A          180 LYWTDLDTNLIESSNMLGLNREVIAD  205 (628)
T ss_dssp             EEEEETTTTEEEEEETTSCSCEEEEE
T ss_pred             EEEEECCCCEEEEEcCCCCceEEeec
Confidence            99999999999999999999976643

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=99.84  E-value=8.6e-20  Score=142.78  Aligned_cols=99  Identities=20%  Similarity=0.325  Sum_probs=86.9

Q ss_pred             cCCCCC----ccEEEe-cCCCCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCCcEEEEeCCCCCceeEEEecCCC
Q psy959            6 KDLLKT----HRSLLL-QAIPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDE   80 (109)
Q Consensus         6 ~~l~G~----~~~~li-~~l~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glaiD~~~~   80 (109)
                      ++++|.    ...+++ ..+..|.||||||..++|||+|..    ..+|++++++|+.+++++...+..|++||||+..+
T Consensus       451 ~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~----~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g  526 (791)
T 3m0c_C          451 TQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSV----LGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHG  526 (791)
T ss_dssp             EEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETT----TTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTT
T ss_pred             EeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecC----CCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCC
Confidence            456663    456666 489999999999999999999998    68999999999999999988899999999999999


Q ss_pred             eEEEEeCCC-CeEEEEeCCCCCeEEEEeC
Q psy959           81 MLYWTDAVR-EKIERSDLAGNNREALYLN  108 (109)
Q Consensus        81 ~lYw~D~~~-~~I~~~~~dG~~~~~l~~~  108 (109)
                      +|||+|++. ++|+++++||+.+++++..
T Consensus       527 ~LYwtD~g~~~~I~~~~~dG~~~~~lv~~  555 (791)
T 3m0c_C          527 FMYWTDWGTPAKIKKGGLNGVDIYSLVTE  555 (791)
T ss_dssp             EEEEEECSSSCEEEEEETTSCCEEEEECS
T ss_pred             CEEEecCCCCCeEEEEecCCCceEEEEeC
Confidence            999999986 8999999999999999864

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=99.84  E-value=9.2e-20  Score=130.61  Aligned_cols=99  Identities=22%  Similarity=0.379  Sum_probs=90.3

Q ss_pred             ecCCCCCccEEEe-cCCCCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCCcEEEEeCCCCCceeEEEecCCCeEE
Q psy959            5 DKDLLKTHRSLLL-QAIPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLY   83 (109)
Q Consensus         5 ~~~l~G~~~~~li-~~l~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glaiD~~~~~lY   83 (109)
                      ..+++|+..+.++ .++..|.+||+|+..++|||+|..    ..+|.++++||+.+++++...+..|++||+|+..+.||
T Consensus        99 r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~----~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly  174 (349)
T 3v64_C           99 RANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSG----TSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIY  174 (349)
T ss_dssp             EEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETT----TTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEE
T ss_pred             EEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCC----CCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEE
Confidence            4567888777776 678999999999999999999998    68999999999999999888899999999999999999


Q ss_pred             EEeCCC-CeEEEEeCCCCCeEEEEe
Q psy959           84 WTDAVR-EKIERSDLAGNNREALYL  107 (109)
Q Consensus        84 w~D~~~-~~I~~~~~dG~~~~~l~~  107 (109)
                      |+|++. ++|+++++||+.++++++
T Consensus       175 ~td~~~~~~I~r~~~dG~~~~~~~~  199 (349)
T 3v64_C          175 WTDWGNTPRIEASSMDGSGRRIIAD  199 (349)
T ss_dssp             EEECSSSCEEEEEETTSCSCEESCC
T ss_pred             EeccCCCCEEEEEeCCCCCcEEEEE
Confidence            999997 999999999999988765

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=99.83  E-value=2.6e-19  Score=130.43  Aligned_cols=99  Identities=20%  Similarity=0.326  Sum_probs=87.2

Q ss_pred             cCCCC----CccEEEe-cCCCCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCCcEEEEeCCCCCceeEEEecCCC
Q psy959            6 KDLLK----THRSLLL-QAIPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDE   80 (109)
Q Consensus         6 ~~l~G----~~~~~li-~~l~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glaiD~~~~   80 (109)
                      .+++|    +....++ ..+..|.|||+|+..++|||+|..    ..+|.+++++|..+++++...+..|++||+|+..+
T Consensus       139 ~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~----~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g  214 (400)
T 3p5b_L          139 TQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSV----LGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHG  214 (400)
T ss_dssp             EEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETT----TTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTT
T ss_pred             EEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECC----CCeEEEEeCCCCceEEEEeCCCCCcceEEEecccC
Confidence            45666    4466666 588999999999999999999998    68999999999999999988899999999999999


Q ss_pred             eEEEEeCC-CCeEEEEeCCCCCeEEEEeC
Q psy959           81 MLYWTDAV-REKIERSDLAGNNREALYLN  108 (109)
Q Consensus        81 ~lYw~D~~-~~~I~~~~~dG~~~~~l~~~  108 (109)
                      +|||+|++ .++|+++++||+.+++++.+
T Consensus       215 ~ly~td~~~~~~I~~~~~dG~~~~~~~~~  243 (400)
T 3p5b_L          215 FMYWTDWGTPAKIKKGGLNGVDIYSLVTE  243 (400)
T ss_dssp             EEEEEECSSSCCEEEEETTSCSCEEEECS
T ss_pred             eEEEEeCCCCCEEEEEeCCCCccEEEEEC
Confidence            99999987 48999999999999998764

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=99.83  E-value=2.3e-19  Score=130.03  Aligned_cols=100  Identities=22%  Similarity=0.377  Sum_probs=91.0

Q ss_pred             ecCCCCCccEEEe-cCCCCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCCcEEEEeCCCCCceeEEEecCCCeEE
Q psy959            5 DKDLLKTHRSLLL-QAIPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLY   83 (109)
Q Consensus         5 ~~~l~G~~~~~li-~~l~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glaiD~~~~~lY   83 (109)
                      ..+++|+..+.++ .++..|.+||+||..++|||+|..    ..+|.+++++|+.+++++...+..|++|++|+..++||
T Consensus       142 r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~----~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly  217 (386)
T 3v65_B          142 RANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSG----TSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIY  217 (386)
T ss_dssp             EEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETT----TTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEE
T ss_pred             EEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCC----CCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEE
Confidence            4567888776766 678999999999999999999998    68999999999999999988899999999999999999


Q ss_pred             EEeCCC-CeEEEEeCCCCCeEEEEeC
Q psy959           84 WTDAVR-EKIERSDLAGNNREALYLN  108 (109)
Q Consensus        84 w~D~~~-~~I~~~~~dG~~~~~l~~~  108 (109)
                      |+|++. ++|+++++||+.+++++..
T Consensus       218 ~td~~~~~~I~r~~~dG~~~~~~~~~  243 (386)
T 3v65_B          218 WTDWGNTPRIEASSMDGSGRRIIADT  243 (386)
T ss_dssp             EEECSSSCEEEEEETTSCSCEEEECS
T ss_pred             EeccCCCCEEEEEeCCCCCcEEEEEC
Confidence            999987 9999999999999988753

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=99.82  E-value=5.6e-19  Score=125.47  Aligned_cols=100  Identities=27%  Similarity=0.418  Sum_probs=88.2

Q ss_pred             ecCCCCCcc-EEEe-cCCCCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCCcEEEEeCCCCCceeEEEecCCCeE
Q psy959            5 DKDLLKTHR-SLLL-QAIPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEML   82 (109)
Q Consensus         5 ~~~l~G~~~-~~li-~~l~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glaiD~~~~~l   82 (109)
                      ..+++|+.. +.++ .++..|.|||+|+..++|||+|..    ..+|.+++++|+.++++....+..|++|++|+..++|
T Consensus        61 r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~----~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~l  136 (318)
T 3sov_A           61 RTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSE----TNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFM  136 (318)
T ss_dssp             EEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETT----TTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEE
T ss_pred             EEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECC----CCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEE
Confidence            356777743 3444 789999999999999999999987    6899999999999999988889999999999999999


Q ss_pred             EEEeCC-CCeEEEEeCCCCCeEEEEeC
Q psy959           83 YWTDAV-REKIERSDLAGNNREALYLN  108 (109)
Q Consensus        83 Yw~D~~-~~~I~~~~~dG~~~~~l~~~  108 (109)
                      ||+|++ .++|+++++||+.+++++.+
T Consensus       137 y~td~~~~~~I~r~~~dG~~~~~~~~~  163 (318)
T 3sov_A          137 YWTDWGEVPKIERAGMDGSSRFIIINS  163 (318)
T ss_dssp             EEEECSSSCEEEEEETTSCSCEEEECS
T ss_pred             EEEecCCCCEEEEEEcCCCCeEEEEEC
Confidence            999986 78999999999999988753

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=99.81  E-value=1.6e-18  Score=122.49  Aligned_cols=99  Identities=20%  Similarity=0.328  Sum_probs=85.2

Q ss_pred             cCCCC----CccEEEe-cCCCCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCCcEEEEeCCCCCceeEEEecCCC
Q psy959            6 KDLLK----THRSLLL-QAIPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDE   80 (109)
Q Consensus         6 ~~l~G----~~~~~li-~~l~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glaiD~~~~   80 (109)
                      .+++|    +..+.++ ..+..|.+||+|+..++|||+|..    ..+|.+++++|..+++++...+..|++|++|+..+
T Consensus        57 ~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~----~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g  132 (316)
T 1ijq_A           57 TQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSV----LGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHG  132 (316)
T ss_dssp             EEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETT----TTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTT
T ss_pred             EECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECC----CCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCC
Confidence            45565    5566666 578999999999999999999987    68999999999999988887889999999999999


Q ss_pred             eEEEEeCCC-CeEEEEeCCCCCeEEEEeC
Q psy959           81 MLYWTDAVR-EKIERSDLAGNNREALYLN  108 (109)
Q Consensus        81 ~lYw~D~~~-~~I~~~~~dG~~~~~l~~~  108 (109)
                      +|||+|++. ++|+++++||+.+++++..
T Consensus       133 ~ly~~d~~~~~~I~~~~~dG~~~~~~~~~  161 (316)
T 1ijq_A          133 FMYWTDWGTPAKIKKGGLNGVDIYSLVTE  161 (316)
T ss_dssp             EEEEEECSSSCEEEEEETTSCCEEEEECS
T ss_pred             EEEEEccCCCCeEEEEcCCCCCeEEEEEC
Confidence            999999985 8999999999999988653

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=99.81  E-value=7e-20  Score=141.50  Aligned_cols=102  Identities=24%  Similarity=0.428  Sum_probs=92.7

Q ss_pred             eeecCCCCCccEEEe-cCCCCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCCcEEEEeCCCCCceeEEEecCCCe
Q psy959            3 STDKDLLKTHRSLLL-QAIPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEM   81 (109)
Q Consensus         3 ~~~~~l~G~~~~~li-~~l~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glaiD~~~~~   81 (109)
                      +..++++|+.+++++ ..+..|++||+||..|+|||+|++.   .++|+++++||+.+++++...+..|+|||+|+.+++
T Consensus       477 I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~---~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~  553 (699)
T 1n7d_A          477 VSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGT---PAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGR  553 (699)
T ss_dssp             EEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSS---SCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCC
T ss_pred             EEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCC---CCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCE
Confidence            346788999988888 5789999999999999999999873   489999999999999888778999999999999999


Q ss_pred             EEEEeCCCCeEEEEeCCCCCeEEEEe
Q psy959           82 LYWTDAVREKIERSDLAGNNREALYL  107 (109)
Q Consensus        82 lYw~D~~~~~I~~~~~dG~~~~~l~~  107 (109)
                      |||+|...++|++++++|+++++++.
T Consensus       554 LY~aD~~~~~I~~~d~dG~~~~~~~~  579 (699)
T 1n7d_A          554 LYWVDSKLHSISSIDVNGGNRKTILE  579 (699)
T ss_dssp             EEEEETTTTEEEEECSSSSCCEEECC
T ss_pred             EEEEecCCCeEEEEccCCCceEEEEe
Confidence            99999999999999999999998875

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.73  E-value=2.3e-16  Score=107.95  Aligned_cols=102  Identities=25%  Similarity=0.405  Sum_probs=87.8

Q ss_pred             eecCCCCCccEEEe-cCCCCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCCcEEEEeCCCCCceeEEEecCCCeE
Q psy959            4 TDKDLLKTHRSLLL-QAIPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEML   82 (109)
Q Consensus         4 ~~~~l~G~~~~~li-~~l~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glaiD~~~~~l   82 (109)
                      ...+++|+.+++++ .++..|+++++||..|+|||+|...+  ..+|++..+||+.++++....+..|+||++|+..++|
T Consensus       104 ~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~--~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~l  181 (267)
T 1npe_A          104 EVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRD--NPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQL  181 (267)
T ss_dssp             EEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSS--SCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEE
T ss_pred             EEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCC--CcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEE
Confidence            34567888887777 46789999999998999999997621  4799999999999888876778899999999999999


Q ss_pred             EEEeCCCCeEEEEeCCCCCeEEEEe
Q psy959           83 YWTDAVREKIERSDLAGNNREALYL  107 (109)
Q Consensus        83 Yw~D~~~~~I~~~~~dG~~~~~l~~  107 (109)
                      ||+|...++|.+++++|..++.++.
T Consensus       182 yv~d~~~~~I~~~~~~g~~~~~~~~  206 (267)
T 1npe_A          182 CWVDAGTHRAECLNPAQPGRRKVLE  206 (267)
T ss_dssp             EEEETTTTEEEEEETTEEEEEEEEE
T ss_pred             EEEECCCCEEEEEecCCCceEEEec
Confidence            9999999999999999987776653

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.72  E-value=4.8e-16  Score=106.39  Aligned_cols=99  Identities=27%  Similarity=0.399  Sum_probs=86.8

Q ss_pred             ecCCCCCccEEEe-cCCCCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCCcEEEEeCCCCCceeEEEecCCCeEE
Q psy959            5 DKDLLKTHRSLLL-QAIPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLY   83 (109)
Q Consensus         5 ~~~l~G~~~~~li-~~l~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glaiD~~~~~lY   83 (109)
                      ..+++|+..+.++ .++..|.+|++|+..++|||+|..    ..+|.+.+++|+.++++....+..|++|++|+.+++||
T Consensus        62 ~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~----~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~ly  137 (267)
T 1npe_A           62 RASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQ----LDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLY  137 (267)
T ss_dssp             EEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETT----TTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEE
T ss_pred             EEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECC----CCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEE
Confidence            4567788777776 567899999999989999999987    68999999999988888777778999999999999999


Q ss_pred             EEeCC--CCeEEEEeCCCCCeEEEEe
Q psy959           84 WTDAV--REKIERSDLAGNNREALYL  107 (109)
Q Consensus        84 w~D~~--~~~I~~~~~dG~~~~~l~~  107 (109)
                      |+|..  .++|+++++||+.++++..
T Consensus       138 v~~~~~~~~~I~~~~~dg~~~~~~~~  163 (267)
T 1npe_A          138 WTDWNRDNPKIETSHMDGTNRRILAQ  163 (267)
T ss_dssp             EEECCSSSCEEEEEETTSCCCEEEEC
T ss_pred             EEECCCCCcEEEEEecCCCCcEEEEE
Confidence            99987  6899999999998887753

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=99.67  E-value=4e-17  Score=126.15  Aligned_cols=98  Identities=20%  Similarity=0.324  Sum_probs=83.4

Q ss_pred             cCCCC----CccEEEe-cCCCCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCCcEEEEeCCCCCceeEEEecCCC
Q psy959            6 KDLLK----THRSLLL-QAIPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDE   80 (109)
Q Consensus         6 ~~l~G----~~~~~li-~~l~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glaiD~~~~   80 (109)
                      .+++|    +....++ ..+..|.+||||+..++|||+|..    ..+|.+++++|..+++++...+..|++||+|+..+
T Consensus       433 ~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~----~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g  508 (699)
T 1n7d_A          433 TQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSV----LGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHG  508 (699)
T ss_dssp             EESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTT----TSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSS
T ss_pred             EecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEecc----CCeEEEEecCCCceEEEEeCCCCCcceEEEccCCC
Confidence            34555    4555555 568899999999999999999987    68999999999999988877789999999999999


Q ss_pred             eEEEEeCCC-CeEEEEeCCCCCeEEEEe
Q psy959           81 MLYWTDAVR-EKIERSDLAGNNREALYL  107 (109)
Q Consensus        81 ~lYw~D~~~-~~I~~~~~dG~~~~~l~~  107 (109)
                      +|||+|++. ++|++++++|+.+++++.
T Consensus       509 ~ly~td~~~~~~I~~~~~dG~~~~~l~~  536 (699)
T 1n7d_A          509 FMYWTDWGTPAKIKKGGLNGVDIYSLVT  536 (699)
T ss_dssp             CCEECCCSSSCCEEBCCSSSCCCCEESC
T ss_pred             cEEEcccCCCCeEEEEeCCCCCeeEEEe
Confidence            999999975 899999999999888764

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=99.55  E-value=3.4e-14  Score=100.46  Aligned_cols=94  Identities=12%  Similarity=0.147  Sum_probs=74.1

Q ss_pred             eecCCCCCccEEEecCCCCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCCcEEEEeCCCCCceeEEEecCCCeEE
Q psy959            4 TDKDLLKTHRSLLLQAIPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLY   83 (109)
Q Consensus         4 ~~~~l~G~~~~~li~~l~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glaiD~~~~~lY   83 (109)
                      -.++++|+.++.|++   .+...+++|..++|||+++..   ..+|++++|||+.+++|.+..+  |   .+|+.+++||
T Consensus       170 y~~~l~g~~~~~l~~---~~~~~~~~P~g~~iy~t~~~~---~~~I~~~~ldG~~~~~Lt~~~~--~---~~~~~g~~Iy  238 (302)
T 3s25_A          170 YRYDTASQSEALFYD---CNCYKPVVLDDTNVYYMDVNR---DNAIVHVNINNPNPVVLTEANI--E---HYNVYGSLIF  238 (302)
T ss_dssp             EEEETTTTEEEEEEC---SCEEEEEEEETTEEEEEEGGG---TTEEEEECSSSCCCEECSCSCE--E---EEEEETTEEE
T ss_pred             EEEECCCCCEEEEeC---CCccceeeecCCEEEEEEcCC---CcEEEEEECCCCCeEEEeCCCc--c---eEEECCCEEE
Confidence            356788888887764   344456778899999999874   4799999999999988865443  3   3777799999


Q ss_pred             EE-eCCCCeEEEEeCCCCCeEEEEeC
Q psy959           84 WT-DAVREKIERSDLAGNNREALYLN  108 (109)
Q Consensus        84 w~-D~~~~~I~~~~~dG~~~~~l~~~  108 (109)
                      |+ +.....|+++++||+++++|...
T Consensus       239 ~~~~~~~~~i~~~~~DG~~r~~l~~~  264 (302)
T 3s25_A          239 YQRGGDNPALCVVKNDGTGFKELAKG  264 (302)
T ss_dssp             EEECSSSCEEEEEETTSCCCEEEEES
T ss_pred             EEECCCCcEEEEEECCCCccEEeeCC
Confidence            98 55578999999999999888764

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=99.48  E-value=6.9e-13  Score=93.74  Aligned_cols=92  Identities=13%  Similarity=0.123  Sum_probs=75.3

Q ss_pred             eeecCCCCCccEEEec-CCCCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCCcEEEEeCCCCCceeEEEecCCCe
Q psy959            3 STDKDLLKTHRSLLLQ-AIPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEM   81 (109)
Q Consensus         3 ~~~~~l~G~~~~~li~-~l~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glaiD~~~~~   81 (109)
                      +..++++|+.+++|.+ .+  |   .++|..++|||++...   ...|+++++||+.++.|....     ..++.+.+++
T Consensus       209 I~~~~ldG~~~~~Lt~~~~--~---~~~~~g~~Iy~~~~~~---~~~i~~~~~DG~~r~~l~~~~-----~~~i~i~~d~  275 (302)
T 3s25_A          209 IVHVNINNPNPVVLTEANI--E---HYNVYGSLIFYQRGGD---NPALCVVKNDGTGFKELAKGE-----FCNINVTSQY  275 (302)
T ss_dssp             EEEECSSSCCCEECSCSCE--E---EEEEETTEEEEEECSS---SCEEEEEETTSCCCEEEEESC-----EEEEEECSSE
T ss_pred             EEEEECCCCCeEEEeCCCc--c---eEEECCCEEEEEECCC---CcEEEEEECCCCccEEeeCCc-----cceEEEeCCE
Confidence            4578999999988874 33  3   4778799999985432   589999999999999987642     2356668999


Q ss_pred             EEEEeCCCCeEEEEeCCCCCeEEEEe
Q psy959           82 LYWTDAVREKIERSDLAGNNREALYL  107 (109)
Q Consensus        82 lYw~D~~~~~I~~~~~dG~~~~~l~~  107 (109)
                      |||+|+..+.|.++++||+++.+|++
T Consensus       276 Iy~td~~~~~i~~~~~dGs~~~~l~~  301 (302)
T 3s25_A          276 VYFTDFVSNKEYCTSTQNPDTIKALQ  301 (302)
T ss_dssp             EEEEETTTCCEEEEESSSCCSCEECC
T ss_pred             EEEEECCCCeEEEEECCCCCceEecC
Confidence            99999998899999999999999876

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.21  E-value=2.6e-10  Score=80.03  Aligned_cols=82  Identities=13%  Similarity=0.093  Sum_probs=69.5

Q ss_pred             CCCcceEEeeCCCCeEEEEec-CCCCCCCeEEEEEcCCCCcEEEEeC---------CCCCceeEEEecCCCeEEEEeCCC
Q psy959           20 IPGRRHFMPPIRLRTLYYTDW-GRFGTAGKILRTTMAGSLKKVIIEK---------DLSQPSGLAIDFDDEMLYWTDAVR   89 (109)
Q Consensus        20 l~~p~~iavd~~~g~lywsd~-~~~~~~~~I~~~~~dG~~~~~l~~~---------~~~~p~glaiD~~~~~lYw~D~~~   89 (109)
                      +..|.+|++||..|.||++|. .    ..+|.+.+.+|.....+...         .+..|.+|++|+.+++||++|...
T Consensus       142 ~~~P~~ia~~~~~g~lyv~d~~~----~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~  217 (329)
T 3fvz_A          142 FCQPTDVAVEPSTGAVFVSDGYC----NSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADREN  217 (329)
T ss_dssp             CSSEEEEEECTTTCCEEEEECSS----CCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTT
T ss_pred             cCCCcEEEEeCCCCeEEEEeCCC----CCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCC
Confidence            568999999998999999996 5    68999999999877766432         245799999999889999999999


Q ss_pred             CeEEEEeCC-CCCeEEE
Q psy959           90 EKIERSDLA-GNNREAL  105 (109)
Q Consensus        90 ~~I~~~~~d-G~~~~~l  105 (109)
                      ++|.+.+.+ |+..+.+
T Consensus       218 ~~I~~~~~~~G~~~~~~  234 (329)
T 3fvz_A          218 GRIQCFKTDTKEFVREI  234 (329)
T ss_dssp             TEEEEEETTTCCEEEEE
T ss_pred             CEEEEEECCCCcEEEEE
Confidence            999999998 7765554

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=99.19  E-value=2.4e-10  Score=83.80  Aligned_cols=79  Identities=15%  Similarity=0.156  Sum_probs=68.5

Q ss_pred             cCCCCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCCcEEEEe-CCCCCceeEEEecCCCeEEEEeCCCCeEEEEe
Q psy959           18 QAIPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIE-KDLSQPSGLAIDFDDEMLYWTDAVREKIERSD   96 (109)
Q Consensus        18 ~~l~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~~~~l~~-~~~~~p~glaiD~~~~~lYw~D~~~~~I~~~~   96 (109)
                      ..+..|.++++||..|+|||+|..    ..+|.+.++++.....+.. .....|++|++|+..++|||+|...++|.+++
T Consensus       223 ~~~~~p~giavdp~~g~lyv~d~~----~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~  298 (430)
T 3tc9_A          223 TKGQNCNGAETHPINGELYFNSWN----AGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSD  298 (430)
T ss_dssp             EECSSCCCEEECTTTCCEEEEETT----TTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             ccCCCceEEEEeCCCCEEEEEECC----CCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEe
Confidence            357899999999999999999998    6899999999876644443 34568999999999999999999999999999


Q ss_pred             CCCC
Q psy959           97 LAGN  100 (109)
Q Consensus        97 ~dG~  100 (109)
                      +||.
T Consensus       299 ~d~~  302 (430)
T 3tc9_A          299 YDWK  302 (430)
T ss_dssp             EETT
T ss_pred             CCcc
Confidence            9985

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.10  E-value=1.7e-09  Score=75.76  Aligned_cols=82  Identities=10%  Similarity=0.109  Sum_probs=68.4

Q ss_pred             CCCCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCC--CcEEEE--------eCCCCCceeEEEecCCCeEEEEeC-
Q psy959           19 AIPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGS--LKKVII--------EKDLSQPSGLAIDFDDEMLYWTDA-   87 (109)
Q Consensus        19 ~l~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~--~~~~l~--------~~~~~~p~glaiD~~~~~lYw~D~-   87 (109)
                      .+..|.+|++|+ .|.||++|..    ..+|.+.+.+|.  ....+-        ...+..|.+|++|+.++.||++|. 
T Consensus        89 ~~~~p~gia~d~-~g~l~v~d~~----~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~  163 (329)
T 3fvz_A           89 LFYLPHGLSIDT-DGNYWVTDVA----LHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGY  163 (329)
T ss_dssp             TCSSEEEEEECT-TSCEEEEETT----TTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECS
T ss_pred             ccCCceEEEECC-CCCEEEEECC----CCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCC
Confidence            367899999998 8889999987    689999999998  344443        234668999999998999999997 


Q ss_pred             CCCeEEEEeCCCCCeEEE
Q psy959           88 VREKIERSDLAGNNREAL  105 (109)
Q Consensus        88 ~~~~I~~~~~dG~~~~~l  105 (109)
                      ..++|.+.+.+|.....+
T Consensus       164 ~~~~I~~~~~~g~~~~~~  181 (329)
T 3fvz_A          164 CNSRIVQFSPSGKFVTQW  181 (329)
T ss_dssp             SCCEEEEECTTSCEEEEE
T ss_pred             CCCeEEEEcCCCCEEEEe
Confidence            799999999999876654

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=99.09  E-value=2.1e-09  Score=78.80  Aligned_cols=99  Identities=13%  Similarity=0.040  Sum_probs=76.3

Q ss_pred             ecCCCCCccEEEecCCCCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCCc--EEEEeCCCCCceeEEEecCCCeE
Q psy959            5 DKDLLKTHRSLLLQAIPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLK--KVIIEKDLSQPSGLAIDFDDEML   82 (109)
Q Consensus         5 ~~~l~G~~~~~li~~l~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~~--~~l~~~~~~~p~glaiD~~~~~l   82 (109)
                      ..++++...+.++..+..|.+|++|+..++||++|.........+.....+|...  ..+.  .+..|+++++|+..++|
T Consensus       163 ~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~~~~~~l~--~~~~p~giavdp~~g~l  240 (430)
T 3tc9_A          163 LIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGFKVITELT--KGQNCNGAETHPINGEL  240 (430)
T ss_dssp             EEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTSCSEEEEE--ECSSCCCEEECTTTCCE
T ss_pred             EEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCceeeeeeec--cCCCceEEEEeCCCCEE
Confidence            3466666666667778899999999966679999985311134677777787665  4443  37899999999989999


Q ss_pred             EEEeCCCCeEEEEeCCCCCeEEE
Q psy959           83 YWTDAVREKIERSDLAGNNREAL  105 (109)
Q Consensus        83 Yw~D~~~~~I~~~~~dG~~~~~l  105 (109)
                      |++|...++|.+.+.+|.....+
T Consensus       241 yv~d~~~~~V~~~~~~~~~~~~~  263 (430)
T 3tc9_A          241 YFNSWNAGQVFRYDFTTQETTPL  263 (430)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEE
T ss_pred             EEEECCCCEEEEEECCCCcEEEE
Confidence            99999999999999998765333

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=99.01  E-value=3.4e-09  Score=77.83  Aligned_cols=79  Identities=15%  Similarity=0.115  Sum_probs=65.5

Q ss_pred             cCCCCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcC-CCCcEEEEe-CCCCCceeEEEecCCCeEEEEeCCCCeEEEE
Q psy959           18 QAIPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMA-GSLKKVIIE-KDLSQPSGLAIDFDDEMLYWTDAVREKIERS   95 (109)
Q Consensus        18 ~~l~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~d-G~~~~~l~~-~~~~~p~glaiD~~~~~lYw~D~~~~~I~~~   95 (109)
                      ..+..|.++++|+..|+|||+|..    ..+|.+.+.+ |...+.+.. .....+.+|++|+..++||++|...++|.++
T Consensus       225 ~~~~~P~giavd~~~G~lyv~d~~----~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~  300 (433)
T 4hw6_A          225 CNARGAKTCAVHPQNGKIYYTRYH----HAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRV  300 (433)
T ss_dssp             EECSSBCCCEECTTTCCEEECBTT----CSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             cccCCCCEEEEeCCCCeEEEEECC----CCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEE
Confidence            357889999999999999999987    6899999997 655344443 3345677899999999999999999999999


Q ss_pred             eCCCC
Q psy959           96 DLAGN  100 (109)
Q Consensus        96 ~~dG~  100 (109)
                      ++|+.
T Consensus       301 ~~d~~  305 (433)
T 4hw6_A          301 DYNRE  305 (433)
T ss_dssp             EBCTT
T ss_pred             eCCCC
Confidence            99864

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.00  E-value=9.8e-09  Score=74.66  Aligned_cols=72  Identities=10%  Similarity=0.103  Sum_probs=58.9

Q ss_pred             CCCcceEEeeCCCCeEEEEec-CCCCCCCeEEEEEc-CCCCcEEEEeC--------------CCCCceeEEEecCCCeEE
Q psy959           20 IPGRRHFMPPIRLRTLYYTDW-GRFGTAGKILRTTM-AGSLKKVIIEK--------------DLSQPSGLAIDFDDEMLY   83 (109)
Q Consensus        20 l~~p~~iavd~~~g~lywsd~-~~~~~~~~I~~~~~-dG~~~~~l~~~--------------~~~~p~glaiD~~~~~lY   83 (109)
                      +..|.+|++|+ .|.||++|. .    +.+|.+.++ +|. ..++...              .+..|.+|++|+. +.||
T Consensus       322 ~~~P~gia~d~-dG~lyvad~~~----~~~I~~~~~~~G~-v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~-g~ly  394 (409)
T 3hrp_A          322 FAQPNGMTVDE-DGNFYIVDGFK----GYCLRKLDILDGY-VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGE-GGYW  394 (409)
T ss_dssp             CSSEEEEEECT-TCCEEEEETTT----TCEEEEEETTTTE-EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSS-SEEE
T ss_pred             eCCCeEEEEeC-CCCEEEEeCCC----CCEEEEEECCCCE-EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCC-CCEE
Confidence            67899999999 688999998 7    699999994 564 3334332              1678999999987 8999


Q ss_pred             EEeCCCCeEEEEeCC
Q psy959           84 WTDAVREKIERSDLA   98 (109)
Q Consensus        84 w~D~~~~~I~~~~~d   98 (109)
                      ++|...++|.+..++
T Consensus       395 Vad~~n~~Ir~i~~e  409 (409)
T 3hrp_A          395 IAEAWGKAIRKYAVE  409 (409)
T ss_dssp             EEESTTCEEEEEEEC
T ss_pred             EEECCCCeEEEEEeC
Confidence            999999999988753

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.96  E-value=5.3e-09  Score=78.40  Aligned_cols=81  Identities=17%  Similarity=0.165  Sum_probs=66.8

Q ss_pred             ecCCCCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcC--------CCC-----------cEEEEe-CCCCCceeEEEe
Q psy959           17 LQAIPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMA--------GSL-----------KKVIIE-KDLSQPSGLAID   76 (109)
Q Consensus        17 i~~l~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~d--------G~~-----------~~~l~~-~~~~~p~glaiD   76 (109)
                      +.....|.++++||..++||++|..    ...|++.+++        |..           .+.+.. ....+|.+|++|
T Consensus       243 v~~~~~p~giavdp~~g~LYvtd~~----~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~  318 (496)
T 3kya_A          243 IAAYKQCNGATIHPINGELYFNSYE----KGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIH  318 (496)
T ss_dssp             EEEESCCCCEEECTTTCCEEEEETT----TTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEEC
T ss_pred             eccCCCceEEEEcCCCCeEEEEECC----CCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEc
Confidence            3356899999999999999999998    6899999997        332           123333 345689999999


Q ss_pred             cCCCeEEEEeCCCCeEEEEeCCCCC
Q psy959           77 FDDEMLYWTDAVREKIERSDLAGNN  101 (109)
Q Consensus        77 ~~~~~lYw~D~~~~~I~~~~~dG~~  101 (109)
                      +..+.||++|...++|.++++||..
T Consensus       319 p~G~~lYvaD~~~h~I~kid~dg~~  343 (496)
T 3kya_A          319 PTGKYAYFGVINNHYFMRSDYDEIK  343 (496)
T ss_dssp             TTSSEEEEEETTTTEEEEEEEETTT
T ss_pred             CCCCEEEEEeCCCCEEEEEecCCCc
Confidence            9999999999999999999999865

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=98.95  E-value=1.8e-08  Score=73.26  Aligned_cols=73  Identities=19%  Similarity=0.287  Sum_probs=60.3

Q ss_pred             Ccc-eEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCCcEEEEeCC--------------CCCceeEEEecCCCeEEEEe
Q psy959           22 GRR-HFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKD--------------LSQPSGLAIDFDDEMLYWTD   86 (109)
Q Consensus        22 ~p~-~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~~~~l~~~~--------------~~~p~glaiD~~~~~lYw~D   86 (109)
                      .|. +|++||..+.||++|..    ..+|.+.+.+|. ..++....              +..|.||++|+.. +||++|
T Consensus       267 ~P~~~ia~~p~~g~lyv~d~~----~~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG-~lyvad  340 (409)
T 3hrp_A          267 NPGPYLIYYFVDSNFYMSDQN----LSSVYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDG-NFYIVD  340 (409)
T ss_dssp             SSCCEEEEETTTTEEEEEETT----TTEEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTC-CEEEEE
T ss_pred             CccccEEEeCCCCEEEEEeCC----CCEEEEEecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCC-CEEEEe
Confidence            367 99999988999999987    689999999998 33444332              6789999999775 599999


Q ss_pred             C-CCCeEEEEe-CCCC
Q psy959           87 A-VREKIERSD-LAGN  100 (109)
Q Consensus        87 ~-~~~~I~~~~-~dG~  100 (109)
                      . ..++|.+.+ -+|.
T Consensus       341 ~~~~~~I~~~~~~~G~  356 (409)
T 3hrp_A          341 GFKGYCLRKLDILDGY  356 (409)
T ss_dssp             TTTTCEEEEEETTTTE
T ss_pred             CCCCCEEEEEECCCCE
Confidence            9 999999999 5554

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.92  E-value=3.4e-09  Score=77.84  Aligned_cols=73  Identities=14%  Similarity=0.224  Sum_probs=60.4

Q ss_pred             CCCcceEEe---------eCCCCeEEEEecCCCCCCCeEEEEEcCCCCcEEEEeC-----------------CCCCceeE
Q psy959           20 IPGRRHFMP---------PIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEK-----------------DLSQPSGL   73 (109)
Q Consensus        20 l~~p~~iav---------d~~~g~lywsd~~~~~~~~~I~~~~~dG~~~~~l~~~-----------------~~~~p~gl   73 (109)
                      +..|.++++         |. .|.||++|..    +.+|.+.+.+|... ++.-.                 .+.+|.||
T Consensus       334 ~~~P~giav~~n~~y~~dd~-~g~lyvaD~~----n~~I~~~~~~G~v~-t~~G~g~~~~~G~~dG~~~~~~~~~~P~gi  407 (433)
T 4hw6_A          334 LWGPNQGIFVKNEAYAGEED-EYDFYFCDRD----SHTVRVLTPEGRVT-TYAGRGNSREWGYVDGELRSQALFNHPTSI  407 (433)
T ss_dssp             CSSEEEEEEEECGGGTTSSC-CEEEEEEETT----TTEEEEECTTSEEE-EEECCCTTCSSCCBCEETTTTCBCSSEEEE
T ss_pred             EcCCccEEEEccccccccCC-CCcEEEEECC----CCEEEEECCCCCEE-EEEeCCCCCccccCCCccccccEeCCCcEE
Confidence            678999999         65 9999999998    79999999888433 33311                 25789999


Q ss_pred             EEecCCCeEEEEeCCCCeEEEEeCC
Q psy959           74 AIDFDDEMLYWTDAVREKIERSDLA   98 (109)
Q Consensus        74 aiD~~~~~lYw~D~~~~~I~~~~~d   98 (109)
                      ++|+..+.||++|...++|.++.++
T Consensus       408 avd~~~g~lyVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          408 AYDMKRKCFYIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             EEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             EEECCCCEEEEEeCCCCEEEEEecC
Confidence            9999999999999999999988764

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.81  E-value=4.6e-08  Score=73.37  Aligned_cols=78  Identities=18%  Similarity=0.178  Sum_probs=64.4

Q ss_pred             CCCCcc-eEEeeC------CCCeEEEEecCCCCCCCeEEEEEcCCCCcEEEEeC-----------------------CCC
Q psy959           19 AIPGRR-HFMPPI------RLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEK-----------------------DLS   68 (109)
Q Consensus        19 ~l~~p~-~iavd~------~~g~lywsd~~~~~~~~~I~~~~~dG~~~~~l~~~-----------------------~~~   68 (109)
                      .|..|. ++++|.      ..|.||++|..    +++|.+.+.+|. ..++.-.                       .+.
T Consensus       370 ~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~----N~rIr~i~~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~  444 (496)
T 3kya_A          370 RMNNPCQGVFVKNPDYTGEEEYDFYFVDRL----NFCVRKVTPEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFR  444 (496)
T ss_dssp             BCSSEEEEEEEECTTCCSSCCEEEEEEEGG----GTEEEEECTTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCS
T ss_pred             ccCCCeEEEEEccccccccCCCeEEEEECC----CCEEEEEeCCCC-EEEEecccccccccCccccccCCCCchhhhhcC
Confidence            367899 889883      48999999998    799999998884 4444321                       267


Q ss_pred             CceeEEEecCCCeEEEEeCCCCeEEEEeCCCCC
Q psy959           69 QPSGLAIDFDDEMLYWTDAVREKIERSDLAGNN  101 (109)
Q Consensus        69 ~p~glaiD~~~~~lYw~D~~~~~I~~~~~dG~~  101 (109)
                      .|.||++|+.++.||.+|...++|.++.++|..
T Consensus       445 ~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~  477 (496)
T 3kya_A          445 DVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEE  477 (496)
T ss_dssp             SEEEEEEETTTTEEEEEETTTTEEEEEEECCCC
T ss_pred             CCcEEEEECCCCEEEEEeCCCCEEEEEECCCCc
Confidence            899999998889999999999999999998853

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=98.78  E-value=5.4e-08  Score=65.35  Aligned_cols=90  Identities=14%  Similarity=0.225  Sum_probs=68.9

Q ss_pred             CCCCCccEEEe-cCCCCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCCcEEEEeCCCCCceeEEEecCCCeEEEE
Q psy959            7 DLLKTHRSLLL-QAIPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWT   85 (109)
Q Consensus         7 ~l~G~~~~~li-~~l~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glaiD~~~~~lYw~   85 (109)
                      +.+|....... ..+..|.+|++|+ .|+||+++..    ...|.+.+.+|.....+....+..|.++++|+.. +||++
T Consensus       177 ~~~~~~~~~~~~~~~~~p~~i~~d~-~g~l~v~~~~----~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g-~l~v~  250 (270)
T 1rwi_B          177 EAESNNQVVLPFTDITAPWGIAVDE-AGTVYVTEHN----TNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDR-TVYVA  250 (270)
T ss_dssp             CTTTCCEEECCCSSCCSEEEEEECT-TCCEEEEETT----TSCEEEECTTCSCCEECCCCSCSCEEEEEECTTC-CEEEE
T ss_pred             ecCCCceEeecccCCCCceEEEECC-CCCEEEEECC----CCcEEEEcCCCCcceeeccCCCCCceeEEECCCC-CEEEE
Confidence            44444433322 4568899999999 6799999987    5889999998877655443456789999999765 69999


Q ss_pred             eCCCCeEEEEeCCCCCe
Q psy959           86 DAVREKIERSDLAGNNR  102 (109)
Q Consensus        86 D~~~~~I~~~~~dG~~~  102 (109)
                      +...++|...+++...+
T Consensus       251 ~~~~~~v~~~~~~~~~~  267 (270)
T 1rwi_B          251 DRGNDRVVKLTSLEHHH  267 (270)
T ss_dssp             EGGGTEEEEECCCGGGS
T ss_pred             ECCCCEEEEEcCCCccc
Confidence            99999999998876543

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=98.78  E-value=8.7e-08  Score=64.31  Aligned_cols=81  Identities=14%  Similarity=0.198  Sum_probs=66.2

Q ss_pred             cCCCCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCCcEEEEeCCCCCceeEEEecCCCeEEEEeCCCCeEEEEeC
Q psy959           18 QAIPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIERSDL   97 (109)
Q Consensus        18 ~~l~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glaiD~~~~~lYw~D~~~~~I~~~~~   97 (109)
                      ..+..|.+|++|+ .|+||+++..    ...|.+.+.++..........+..|.+|++|+.. +||+++...+.|.+.+.
T Consensus       147 ~~~~~p~~i~~~~-~g~l~v~~~~----~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g-~l~v~~~~~~~v~~~~~  220 (270)
T 1rwi_B          147 TGLNDPDGVAVDN-SGNVYVTDTD----NNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAG-TVYVTEHNTNQVVKLLA  220 (270)
T ss_dssp             CSCCSCCCEEECT-TCCEEEEEGG----GTEEEEECTTTCCEEECCCSSCCSEEEEEECTTC-CEEEEETTTSCEEEECT
T ss_pred             ccCCCceeEEEeC-CCCEEEEECC----CCEEEEEecCCCceEeecccCCCCceEEEECCCC-CEEEEECCCCcEEEEcC
Confidence            3467899999999 7789999987    5899999998877554444456889999999765 99999999899999999


Q ss_pred             CCCCeEE
Q psy959           98 AGNNREA  104 (109)
Q Consensus        98 dG~~~~~  104 (109)
                      +|.....
T Consensus       221 ~~~~~~~  227 (270)
T 1rwi_B          221 GSTTSTV  227 (270)
T ss_dssp             TCSCCEE
T ss_pred             CCCccee
Confidence            8875543

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=98.78  E-value=1.9e-07  Score=63.47  Aligned_cols=92  Identities=9%  Similarity=0.087  Sum_probs=70.1

Q ss_pred             CCCCccEEEe-cCCCCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCCcEEEEe-CCCCCceeEEEecCCCeEEEE
Q psy959            8 LLKTHRSLLL-QAIPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIE-KDLSQPSGLAIDFDDEMLYWT   85 (109)
Q Consensus         8 l~G~~~~~li-~~l~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~~~~l~~-~~~~~p~glaiD~~~~~lYw~   85 (109)
                      .+|+..+.+- ..+..|.+|++|+ .|.+|+++..    ...|.+.+.+|.....+.. ..+..|.+|++|+. ++||++
T Consensus       107 ~~g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~----~~~i~~~~~~g~~~~~~~~~~~~~~p~~i~~~~~-g~l~v~  180 (286)
T 1q7f_A          107 QYGQFVRKFGATILQHPRGVTVDN-KGRIIVVECK----VMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDK-QEIFIS  180 (286)
T ss_dssp             TTSCEEEEECTTTCSCEEEEEECT-TSCEEEEETT----TTEEEEECTTSCEEEEEECTTTCSSEEEEEECSS-SEEEEE
T ss_pred             CCCcEEEEecCccCCCceEEEEeC-CCCEEEEECC----CCEEEEEcCCCCEEEEeCCCCccCCcEEEEECCC-CCEEEE
Confidence            4454443332 3457899999999 7889999986    5899999988876655543 34678999999975 679999


Q ss_pred             eCCCCeEEEEeCCCCCeEEE
Q psy959           86 DAVREKIERSDLAGNNREAL  105 (109)
Q Consensus        86 D~~~~~I~~~~~dG~~~~~l  105 (109)
                      +...+.|...+.+|.....+
T Consensus       181 ~~~~~~i~~~~~~g~~~~~~  200 (286)
T 1q7f_A          181 DNRAHCVKVFNYEGQYLRQI  200 (286)
T ss_dssp             EGGGTEEEEEETTCCEEEEE
T ss_pred             ECCCCEEEEEcCCCCEEEEE
Confidence            99889999999988755443

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=98.71  E-value=3.9e-07  Score=61.83  Aligned_cols=93  Identities=13%  Similarity=0.047  Sum_probs=70.4

Q ss_pred             CCCCCccEEEe--cCCCCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCCcEEEEeC-CCCCceeEEEecCCCeEE
Q psy959            7 DLLKTHRSLLL--QAIPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEK-DLSQPSGLAIDFDDEMLY   83 (109)
Q Consensus         7 ~l~G~~~~~li--~~l~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~~~~l~~~-~~~~p~glaiD~~~~~lY   83 (109)
                      +.+|+....+-  ..+..|.+|++|+ .|.+|+++..    ...|.+.+.+|.....+... .+..|.+|++|+. ++||
T Consensus       148 ~~~g~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~~----~~~i~~~~~~g~~~~~~~~~g~~~~p~~i~~d~~-G~l~  221 (286)
T 1q7f_A          148 DQNGNVLHKFGCSKHLEFPNGVVVND-KQEIFISDNR----AHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSN-GEIL  221 (286)
T ss_dssp             CTTSCEEEEEECTTTCSSEEEEEECS-SSEEEEEEGG----GTEEEEEETTCCEEEEESCTTTSCSEEEEEECTT-CCEE
T ss_pred             cCCCCEEEEeCCCCccCCcEEEEECC-CCCEEEEECC----CCEEEEEcCCCCEEEEEccCCccCCCcEEEECCC-CCEE
Confidence            44555443332  3467899999999 7899999987    68999999988765554332 2578999999975 5899


Q ss_pred             EEeCCCC-eEEEEeCCCCCeEEE
Q psy959           84 WTDAVRE-KIERSDLAGNNREAL  105 (109)
Q Consensus        84 w~D~~~~-~I~~~~~dG~~~~~l  105 (109)
                      .++.... +|...+.+|.....+
T Consensus       222 v~~~~~~~~i~~~~~~g~~~~~~  244 (286)
T 1q7f_A          222 IADNHNNFNLTIFTQDGQLISAL  244 (286)
T ss_dssp             EEECSSSCEEEEECTTSCEEEEE
T ss_pred             EEeCCCCEEEEEECCCCCEEEEE
Confidence            9999875 999999988765554

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.70  E-value=3.2e-07  Score=63.87  Aligned_cols=80  Identities=16%  Similarity=0.293  Sum_probs=62.7

Q ss_pred             CCCcceEEeeCCCCeEEEEecCCC-------------CCCCeEEEEEcCCCCcEEEEeCCCCCceeEEEecCCCeEEEEe
Q psy959           20 IPGRRHFMPPIRLRTLYYTDWGRF-------------GTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTD   86 (109)
Q Consensus        20 l~~p~~iavd~~~g~lywsd~~~~-------------~~~~~I~~~~~dG~~~~~l~~~~~~~p~glaiD~~~~~lYw~D   86 (109)
                      +..|.++++|+..|.||++|....             .....|.+.+.++...+.+. ..+..|+||++++..+.||++|
T Consensus       125 ~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~-~~~~~p~gia~~~dg~~lyv~d  203 (322)
T 2fp8_A          125 FKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLL-KELHVPGGAEVSADSSFVLVAE  203 (322)
T ss_dssp             CSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEE-EEESCCCEEEECTTSSEEEEEE
T ss_pred             ccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEec-cCCccCcceEECCCCCEEEEEe
Confidence            467999999986789999996520             01367888887655544443 3467899999999888999999


Q ss_pred             CCCCeEEEEeCCCC
Q psy959           87 AVREKIERSDLAGN  100 (109)
Q Consensus        87 ~~~~~I~~~~~dG~  100 (109)
                      ...++|.+.+++|.
T Consensus       204 ~~~~~I~~~~~~~~  217 (322)
T 2fp8_A          204 FLSHQIVKYWLEGP  217 (322)
T ss_dssp             GGGTEEEEEESSST
T ss_pred             CCCCeEEEEECCCC
Confidence            99999999999973

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=98.64  E-value=2.2e-07  Score=66.38  Aligned_cols=81  Identities=16%  Similarity=0.130  Sum_probs=64.0

Q ss_pred             ccEEEecCCCCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCCcEEEEe-----CCCCCceeEEEecC---CCeEE
Q psy959           12 HRSLLLQAIPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIE-----KDLSQPSGLAIDFD---DEMLY   83 (109)
Q Consensus        12 ~~~~li~~l~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~~~~l~~-----~~~~~p~glaiD~~---~~~lY   83 (109)
                      ..+++.+++..|++++++| .|.||+++..     .+|.+.. +|.. +.+..     .....|.||++++.   +++||
T Consensus        22 ~~~~va~~l~~P~~ia~~p-dG~l~V~e~~-----g~I~~i~-~g~~-~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lY   93 (352)
T 2ism_A           22 RVEEVVGGLEVPWALAFLP-DGGMLIAERP-----GRIRLFR-EGRL-STYAELSVYHRGESGLLGLALHPRFPQEPYVY   93 (352)
T ss_dssp             CEEEEECCCSCEEEEEECT-TSCEEEEETT-----TEEEEEE-TTEE-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEE
T ss_pred             EEEEEECCCCCceEEEEcC-CCeEEEEeCC-----CeEEEEE-CCCc-cEeecceEeecCCCCceeEEECCCCCCCCEEE
Confidence            3455668899999999999 7889999964     7999988 7753 33322     23568999999988   88999


Q ss_pred             EEeCCC-----CeEEEEeCCCC
Q psy959           84 WTDAVR-----EKIERSDLAGN  100 (109)
Q Consensus        84 w~D~~~-----~~I~~~~~dG~  100 (109)
                      .++...     .+|.+.+.++.
T Consensus        94 v~~~~~~~~~~~~v~r~~~~~~  115 (352)
T 2ism_A           94 AYRTVAEGGLRNQVVRLRHLGE  115 (352)
T ss_dssp             EEEEECTTSSEEEEEEEEECSS
T ss_pred             EEEecCCCCCccEEEEEEeCCC
Confidence            999854     78999998864

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=98.62  E-value=4e-07  Score=65.21  Aligned_cols=80  Identities=16%  Similarity=0.200  Sum_probs=63.7

Q ss_pred             cEEEecCCCCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCCcEEEEe-----CCCCCceeEEEecC---CCeEEE
Q psy959           13 RSLLLQAIPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIE-----KDLSQPSGLAIDFD---DEMLYW   84 (109)
Q Consensus        13 ~~~li~~l~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~~~~l~~-----~~~~~p~glaiD~~---~~~lYw   84 (109)
                      .+++.+++..|++++++| .|.||+++..     .+|.+.+.+|.  +.+..     .....|.||++++.   +++||.
T Consensus        21 ~~~va~~l~~P~~ia~~p-dG~l~V~e~~-----g~I~~~d~~G~--~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv   92 (354)
T 3a9g_A           21 ISEVASDLEVPWSIAPLG-GGRYLVTERP-----GRLVLISPSGK--KLVASFDVANVGEAGLLGLALHPEFPKKSWVYL   92 (354)
T ss_dssp             EEEEECSCSCEEEEEEEE-TTEEEEEETT-----TEEEEECSSCE--EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEE
T ss_pred             EEEEeCCCCCCeEEEEcC-CCeEEEEeCC-----CEEEEEeCCCc--eEeeccceeecCCCceeeEEeCCCCCcCCEEEE
Confidence            345558899999999999 7899999974     79999977776  44432     23567999999998   899999


Q ss_pred             EeCC---C----CeEEEEeCCCC
Q psy959           85 TDAV---R----EKIERSDLAGN  100 (109)
Q Consensus        85 ~D~~---~----~~I~~~~~dG~  100 (109)
                      ++..   .    .+|.+.+.++.
T Consensus        93 ~~~~~~~~~~~~~~v~r~~~~~~  115 (354)
T 3a9g_A           93 YASYFAEGGHIRNRVIRGRLDGS  115 (354)
T ss_dssp             EEEEECGGGCEEEEEEEEEECSS
T ss_pred             EEeccCCCCCcceEEEEEEECCC
Confidence            9863   3    68999998876

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=98.60  E-value=1.1e-06  Score=59.30  Aligned_cols=91  Identities=20%  Similarity=0.199  Sum_probs=67.3

Q ss_pred             CCCCCccEEEe-cCCCCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCCcEEEEeCCCCCceeEEEecCCCeEEEE
Q psy959            7 DLLKTHRSLLL-QAIPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWT   85 (109)
Q Consensus         7 ~l~G~~~~~li-~~l~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glaiD~~~~~lYw~   85 (109)
                      +.+|+.....+ .....|.++++|+ .|.||+++..    ...|.+.+.+|.............|.+|++|+ .+.||++
T Consensus       131 ~~~g~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~----~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~-~g~l~v~  204 (300)
T 2qc5_A          131 TADGTIYEYDLPNKGSYPAFITLGS-DNALWFTENQ----NNSIGRITNTGKLEEYPLPTNAAAPVGITSGN-DGALWFV  204 (300)
T ss_dssp             CTTSCEEEEECSSTTCCEEEEEECT-TSSEEEEETT----TTEEEEECTTCCEEEEECSSTTCCEEEEEECT-TSSEEEE
T ss_pred             CCCCCEEEccCCCCCCCceeEEECC-CCCEEEEecC----CCeEEEECCCCcEEEeeCCCCCCCcceEEECC-CCCEEEE
Confidence            34444433333 2467899999998 7789999976    57899998877655432234567899999997 5689999


Q ss_pred             eCCCCeEEEEeCCCCCeE
Q psy959           86 DAVREKIERSDLAGNNRE  103 (109)
Q Consensus        86 D~~~~~I~~~~~dG~~~~  103 (109)
                      +...+.|.+.+.+|....
T Consensus       205 ~~~~~~i~~~~~~g~~~~  222 (300)
T 2qc5_A          205 EIMGNKIGRITTTGEISE  222 (300)
T ss_dssp             ETTTTEEEEECTTCCEEE
T ss_pred             ccCCCEEEEEcCCCcEEE
Confidence            998889999998776444

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=98.59  E-value=1.2e-06  Score=59.04  Aligned_cols=90  Identities=13%  Similarity=0.123  Sum_probs=67.4

Q ss_pred             CCCCCccEEEe-cCCCCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCCcEEEEeCCCCCceeEEEecCCCeEEEE
Q psy959            7 DLLKTHRSLLL-QAIPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWT   85 (109)
Q Consensus         7 ~l~G~~~~~li-~~l~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glaiD~~~~~lYw~   85 (109)
                      +.+|+...... .....|.+|++|+ .|.||+++..    ...|.+.+.+|.............|.+|++|+. ++||++
T Consensus       173 ~~~g~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~----~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~~-g~l~v~  246 (300)
T 2qc5_A          173 TNTGKLEEYPLPTNAAAPVGITSGN-DGALWFVEIM----GNKIGRITTTGEISEYDIPTPNARPHAITAGKN-SEIWFT  246 (300)
T ss_dssp             CTTCCEEEEECSSTTCCEEEEEECT-TSSEEEEETT----TTEEEEECTTCCEEEEECSSTTCCEEEEEECST-TCEEEE
T ss_pred             CCCCcEEEeeCCCCCCCcceEEECC-CCCEEEEccC----CCEEEEEcCCCcEEEEECCCCCCCceEEEECCC-CCEEEe
Confidence            34455443323 3467899999998 7899999986    578999998776554433345678999999976 569999


Q ss_pred             eCCCCeEEEEeCCCCCe
Q psy959           86 DAVREKIERSDLAGNNR  102 (109)
Q Consensus        86 D~~~~~I~~~~~dG~~~  102 (109)
                      +...+.|.+.+.+|.-.
T Consensus       247 ~~~~~~i~~~~~~g~~~  263 (300)
T 2qc5_A          247 EWGANQIGRITNDNTIQ  263 (300)
T ss_dssp             ETTTTEEEEECTTSCEE
T ss_pred             ccCCCeEEEECCCCcEE
Confidence            98888999999877543

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.59  E-value=8.1e-07  Score=61.82  Aligned_cols=85  Identities=15%  Similarity=0.178  Sum_probs=64.2

Q ss_pred             EEEecCCCCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCC---CcEEEEeCCCCCceeEEEecCCCeEEEEeCC--
Q psy959           14 SLLLQAIPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGS---LKKVIIEKDLSQPSGLAIDFDDEMLYWTDAV--   88 (109)
Q Consensus        14 ~~li~~l~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~---~~~~l~~~~~~~p~glaiD~~~~~lYw~D~~--   88 (109)
                      +.+...+..|.+|++++..+.||++|..    ..+|.+.+++|.   ..+++... .. |.||++|+. ++||.++..  
T Consensus       178 ~~~~~~~~~p~gia~~~dg~~lyv~d~~----~~~I~~~~~~~~~~~~~~~~~~~-~g-P~gi~~d~~-G~l~va~~~~~  250 (322)
T 2fp8_A          178 TLLLKELHVPGGAEVSADSSFVLVAEFL----SHQIVKYWLEGPKKGTAEVLVKI-PN-PGNIKRNAD-GHFWVSSSEEL  250 (322)
T ss_dssp             EEEEEEESCCCEEEECTTSSEEEEEEGG----GTEEEEEESSSTTTTCEEEEEEC-SS-EEEEEECTT-SCEEEEEEEET
T ss_pred             EEeccCCccCcceEECCCCCEEEEEeCC----CCeEEEEECCCCcCCccceEEeC-CC-CCCeEECCC-CCEEEEecCcc
Confidence            3444667899999999966689999987    689999999873   34444432 23 999999975 578988875  


Q ss_pred             --------CCeEEEEeCCCCCeEEE
Q psy959           89 --------REKIERSDLAGNNREAL  105 (109)
Q Consensus        89 --------~~~I~~~~~dG~~~~~l  105 (109)
                              ...|.+.+.+|+....+
T Consensus       251 ~~~~~~~~~~~v~~~d~~G~~~~~~  275 (322)
T 2fp8_A          251 DGNMHGRVDPKGIKFDEFGNILEVI  275 (322)
T ss_dssp             TSSTTSCEEEEEEEECTTSCEEEEE
T ss_pred             cccccCCCccEEEEECCCCCEEEEE
Confidence                    46788888888765544

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=98.54  E-value=3e-06  Score=57.85  Aligned_cols=86  Identities=9%  Similarity=0.006  Sum_probs=68.3

Q ss_pred             CCCccEEEecCCCCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCCcEEEEeCCCCCceeEEEecCCCeEEEEeCC
Q psy959            9 LKTHRSLLLQAIPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAV   88 (109)
Q Consensus         9 ~G~~~~~li~~l~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glaiD~~~~~lYw~D~~   88 (109)
                      .|...+++..++..|.+++.|+..+.|||++..    ...|.+.+.++. .+.+ ......|.+|++|+ .++||+++..
T Consensus        16 ~~~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~----~~~i~~~~~~~~-~~~~-~~~~~~~~~l~~~~-dg~l~v~~~~   88 (296)
T 3e5z_A           16 AGAEARRLADGFTWTEGPVYVPARSAVIFSDVR----QNRTWAWSDDGQ-LSPE-MHPSHHQNGHCLNK-QGHLIACSHG   88 (296)
T ss_dssp             TTCCCEEEECCCSSEEEEEEEGGGTEEEEEEGG----GTEEEEEETTSC-EEEE-ESSCSSEEEEEECT-TCCEEEEETT
T ss_pred             CCCcEEEEecCCccccCCeEeCCCCEEEEEeCC----CCEEEEEECCCC-eEEE-ECCCCCcceeeECC-CCcEEEEecC
Confidence            344556676889999999999966569999987    689999999887 5444 34557899999997 4568999988


Q ss_pred             CCeEEEEeC-CCCC
Q psy959           89 REKIERSDL-AGNN  101 (109)
Q Consensus        89 ~~~I~~~~~-dG~~  101 (109)
                      ...|.+.+. +|+-
T Consensus        89 ~~~i~~~d~~~g~~  102 (296)
T 3e5z_A           89 LRRLERQREPGGEW  102 (296)
T ss_dssp             TTEEEEECSTTCCE
T ss_pred             CCeEEEEcCCCCcE
Confidence            889999998 5653

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.52  E-value=1.5e-06  Score=60.32  Aligned_cols=77  Identities=16%  Similarity=0.082  Sum_probs=57.7

Q ss_pred             EEEecCC---CCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCCcEEEEeCCCCCceeEEEecCCCeEEEEeCCC-
Q psy959           14 SLLLQAI---PGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVR-   89 (109)
Q Consensus        14 ~~li~~l---~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glaiD~~~~~lYw~D~~~-   89 (109)
                      ..++..+   ..|.++++|+ .|.|||+|..    .++|.+.+.+|..... ... -..|.+|++|+.. +||.+|... 
T Consensus        22 ~~~~~~~p~~~~pegia~~~-~g~lyv~d~~----~~~I~~~d~~g~~~~~-~~~-~~~p~gia~~~dG-~l~vad~~~~   93 (306)
T 2p4o_A           22 AKIITSFPVNTFLENLASAP-DGTIFVTNHE----VGEIVSITPDGNQQIH-ATV-EGKVSGLAFTSNG-DLVATGWNAD   93 (306)
T ss_dssp             EEEEEEECTTCCEEEEEECT-TSCEEEEETT----TTEEEEECTTCCEEEE-EEC-SSEEEEEEECTTS-CEEEEEECTT
T ss_pred             ceEeEeCCCCCCcceEEECC-CCCEEEEeCC----CCeEEEECCCCceEEE-EeC-CCCceeEEEcCCC-cEEEEeccCC
Confidence            3445555   7899999999 7889999987    6899999999864333 332 3579999999764 599999764 


Q ss_pred             -CeEEEEeCC
Q psy959           90 -EKIERSDLA   98 (109)
Q Consensus        90 -~~I~~~~~d   98 (109)
                       .+|.+++..
T Consensus        94 ~~~v~~~d~~  103 (306)
T 2p4o_A           94 SIPVVSLVKS  103 (306)
T ss_dssp             SCEEEEEECT
T ss_pred             cceEEEEcCC
Confidence             357777643

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=98.46  E-value=1.7e-06  Score=59.59  Aligned_cols=85  Identities=14%  Similarity=0.201  Sum_probs=65.1

Q ss_pred             EecCCCCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcC---CC--CcEEEEeC--CCCCceeEEEecCCCeEEEEeCC
Q psy959           16 LLQAIPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMA---GS--LKKVIIEK--DLSQPSGLAIDFDDEMLYWTDAV   88 (109)
Q Consensus        16 li~~l~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~d---G~--~~~~l~~~--~~~~p~glaiD~~~~~lYw~D~~   88 (109)
                      +...+..|++++++|....|||++..    ..+|.+.++|   |.  +++++...  ....|.|+++|+. ++||.+...
T Consensus       144 ~~~~~~~pngi~~spdg~~lyv~~~~----~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~-G~lwva~~~  218 (297)
T 3g4e_A          144 YFDQVDISNGLDWSLDHKIFYYIDSL----SYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAE-GKLWVACYN  218 (297)
T ss_dssp             EEEEESBEEEEEECTTSCEEEEEEGG----GTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTT-SCEEEEEET
T ss_pred             EeeccccccceEEcCCCCEEEEecCC----CCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCC-CCEEEEEcC
Confidence            44667889999999977789999987    6899999875   32  23444432  2357999999976 589999988


Q ss_pred             CCeEEEEeCC-CCCeEEE
Q psy959           89 REKIERSDLA-GNNREAL  105 (109)
Q Consensus        89 ~~~I~~~~~d-G~~~~~l  105 (109)
                      .++|.+.+.+ |+-...+
T Consensus       219 ~~~v~~~d~~tG~~~~~i  236 (297)
T 3g4e_A          219 GGRVIRLDPVTGKRLQTV  236 (297)
T ss_dssp             TTEEEEECTTTCCEEEEE
T ss_pred             CCEEEEEcCCCceEEEEE
Confidence            8899999987 7654443

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=98.44  E-value=5.8e-06  Score=55.67  Aligned_cols=89  Identities=20%  Similarity=0.215  Sum_probs=65.0

Q ss_pred             CCCCCccEEEe-cCCCCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCCcEEEEeCCCCCceeEEEecCCCeEEEE
Q psy959            7 DLLKTHRSLLL-QAIPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWT   85 (109)
Q Consensus         7 ~l~G~~~~~li-~~l~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glaiD~~~~~lYw~   85 (109)
                      +.+|+...... .....|.++++|+ .|.+|+++..    ...|.+.+.+|.............|.+|++|+. +.||++
T Consensus       126 d~~g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~----~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~-g~l~v~  199 (299)
T 2z2n_A          126 TDDGKIREYELPNKGSYPSFITLGS-DNALWFTENQ----NNAIGRITESGDITEFKIPTPASGPVGITKGND-DALWFV  199 (299)
T ss_dssp             CTTCCEEEEECSSTTCCEEEEEECT-TSCEEEEETT----TTEEEEECTTCCEEEEECSSTTCCEEEEEECTT-SSEEEE
T ss_pred             CCCCCEEEecCCCCCCCCceEEEcC-CCCEEEEeCC----CCEEEEEcCCCcEEEeeCCCCCCcceeEEECCC-CCEEEE
Confidence            34444443333 3457899999998 7899999876    578999988665444323344678999999976 679999


Q ss_pred             eCCCCeEEEEeCCCCC
Q psy959           86 DAVREKIERSDLAGNN  101 (109)
Q Consensus        86 D~~~~~I~~~~~dG~~  101 (109)
                      +...+.|.+.+.+|.-
T Consensus       200 ~~~~~~i~~~~~~g~~  215 (299)
T 2z2n_A          200 EIIGNKIGRITTSGEI  215 (299)
T ss_dssp             ETTTTEEEEECTTCCE
T ss_pred             ccCCceEEEECCCCcE
Confidence            9888899999886653

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=98.42  E-value=5.8e-06  Score=55.65  Aligned_cols=87  Identities=16%  Similarity=0.145  Sum_probs=63.8

Q ss_pred             CCCCccEEEe-cCCCCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCCcEEEEeCCCCCceeEEEecCCCeEEEEe
Q psy959            8 LLKTHRSLLL-QAIPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTD   86 (109)
Q Consensus         8 l~G~~~~~li-~~l~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glaiD~~~~~lYw~D   86 (109)
                      .+|+.....+ .....|.++++|+ .|.||+++..    ...|.+.+.+|.............|.+|++|+. ++||+++
T Consensus       169 ~~g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~----~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~-g~l~v~~  242 (299)
T 2z2n_A          169 ESGDITEFKIPTPASGPVGITKGN-DDALWFVEII----GNKIGRITTSGEITEFKIPTPNARPHAITAGAG-IDLWFTE  242 (299)
T ss_dssp             TTCCEEEEECSSTTCCEEEEEECT-TSSEEEEETT----TTEEEEECTTCCEEEEECSSTTCCEEEEEECST-TCEEEEE
T ss_pred             CCCcEEEeeCCCCCCcceeEEECC-CCCEEEEccC----CceEEEECCCCcEEEEECCCCCCCceeEEECCC-CCEEEec
Confidence            3444433323 3567899999998 6889999976    578999988665433222234678999999976 5699999


Q ss_pred             CCCCeEEEEeCCCC
Q psy959           87 AVREKIERSDLAGN  100 (109)
Q Consensus        87 ~~~~~I~~~~~dG~  100 (109)
                      ...+.|.+.+.+|.
T Consensus       243 ~~~~~i~~~d~~g~  256 (299)
T 2z2n_A          243 WGANKIGRLTSNNI  256 (299)
T ss_dssp             TTTTEEEEEETTTE
T ss_pred             cCCceEEEECCCCc
Confidence            88889999998764

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.41  E-value=1.1e-05  Score=55.72  Aligned_cols=85  Identities=21%  Similarity=0.199  Sum_probs=68.1

Q ss_pred             CCccEEEecCCCCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCCcEEEEeCCCCCceeEEEecCCCeEEEEeCCC
Q psy959           10 KTHRSLLLQAIPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVR   89 (109)
Q Consensus        10 G~~~~~li~~l~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glaiD~~~~~lYw~D~~~   89 (109)
                      |...+.|.++...+.+.+.++..+.|||+|..    ..+|.+.+.+|.. +++. .....|+++++|+. ++||+++...
T Consensus        34 ~~~~~~l~~~~~~~egp~~~~~g~~l~~~d~~----~~~i~~~~~~g~~-~~~~-~~~~~~~gl~~d~d-G~l~v~~~~~  106 (305)
T 3dr2_A           34 DARLLTLYDQATWSEGPAWWEAQRTLVWSDLV----GRRVLGWREDGTV-DVLL-DATAFTNGNAVDAQ-QRLVHCEHGR  106 (305)
T ss_dssp             TCCCEEEECCCSSEEEEEEEGGGTEEEEEETT----TTEEEEEETTSCE-EEEE-ESCSCEEEEEECTT-SCEEEEETTT
T ss_pred             CCceEEEecCCcCccCCeEeCCCCEEEEEECC----CCEEEEEeCCCCE-EEEe-CCCCccceeeECCC-CCEEEEECCC
Confidence            44556777889999999999977779999987    6899999887763 3333 34567999999975 5699999988


Q ss_pred             CeEEEEeCCCCC
Q psy959           90 EKIERSDLAGNN  101 (109)
Q Consensus        90 ~~I~~~~~dG~~  101 (109)
                      ..|.+.+.+|+-
T Consensus       107 ~~v~~~~~~g~~  118 (305)
T 3dr2_A          107 RAITRSDADGQA  118 (305)
T ss_dssp             TEEEEECTTSCE
T ss_pred             CEEEEECCCCCE
Confidence            899999998763

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.37  E-value=4.8e-06  Score=58.58  Aligned_cols=80  Identities=19%  Similarity=0.173  Sum_probs=59.5

Q ss_pred             CCCCcceEEeeCCCCeEEEEecCCC-CCCCeEEEEEcC-CCCcEEEEeC-C----CCCceeEEEecCCCeEEEEeC---C
Q psy959           19 AIPGRRHFMPPIRLRTLYYTDWGRF-GTAGKILRTTMA-GSLKKVIIEK-D----LSQPSGLAIDFDDEMLYWTDA---V   88 (109)
Q Consensus        19 ~l~~p~~iavd~~~g~lywsd~~~~-~~~~~I~~~~~d-G~~~~~l~~~-~----~~~p~glaiD~~~~~lYw~D~---~   88 (109)
                      .+..|.++++|+ .|+|||+|.+.. ...++|.+.+++ |...+.+... .    ...|+++++|+..+.+|.+|.   .
T Consensus        65 ~~~~p~gv~~d~-~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~  143 (343)
T 2qe8_A           65 TFDTVLGIKSDG-NGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDD  143 (343)
T ss_dssp             CCSCEEEEEECS-SSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGG
T ss_pred             ceeEeeEEEEcC-CCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCC
Confidence            467899999999 699999997510 002789999986 4434444321 1    246899999998899999999   7


Q ss_pred             CCeEEEEeCCC
Q psy959           89 REKIERSDLAG   99 (109)
Q Consensus        89 ~~~I~~~~~dG   99 (109)
                      ...|...+++.
T Consensus       144 ~~~i~v~d~~~  154 (343)
T 2qe8_A          144 KAALIRVDLQT  154 (343)
T ss_dssp             GCEEEEEETTT
T ss_pred             CCeEEEEECCC
Confidence            78999998863

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.36  E-value=2.9e-06  Score=58.61  Aligned_cols=77  Identities=18%  Similarity=0.266  Sum_probs=58.2

Q ss_pred             CCCcceEEeeCCCCeEEEEecC--C-----------CCCCCeEEEEEcC-CCCcEEEEeCCCCCceeEEEecCCCeEEEE
Q psy959           20 IPGRRHFMPPIRLRTLYYTDWG--R-----------FGTAGKILRTTMA-GSLKKVIIEKDLSQPSGLAIDFDDEMLYWT   85 (109)
Q Consensus        20 l~~p~~iavd~~~g~lywsd~~--~-----------~~~~~~I~~~~~d-G~~~~~l~~~~~~~p~glaiD~~~~~lYw~   85 (109)
                      +..|+++++|+ .|.+|++|..  .           +.....|++.+.+ |.... +.  .+..|+||++++..+.||++
T Consensus       130 ~~~~~~i~~d~-dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~-~~--~~~~p~gl~~spdg~~lyv~  205 (305)
T 3dr2_A          130 LNSPNDLIVAR-DGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQR-MA--DLDHPNGLAFSPDEQTLYVS  205 (305)
T ss_dssp             CSCCCCEEECT-TSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEE-EE--EESSEEEEEECTTSSEEEEE
T ss_pred             cCCCCCEEECC-CCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEE-Ee--cCCCCcceEEcCCCCEEEEE
Confidence            46789999999 8999999741  0           0013578888885 44443 33  57799999999999999999


Q ss_pred             eCCC-----CeEEEEeCCCC
Q psy959           86 DAVR-----EKIERSDLAGN  100 (109)
Q Consensus        86 D~~~-----~~I~~~~~dG~  100 (109)
                      |...     ..|.+.++++.
T Consensus       206 ~~~~~~~~~~~i~~~~~~~~  225 (305)
T 3dr2_A          206 QTPEQGHGSVEITAFAWRDG  225 (305)
T ss_dssp             ECCC---CCCEEEEEEEETT
T ss_pred             ecCCcCCCCCEEEEEEecCC
Confidence            9873     78999888763

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.32  E-value=6.5e-06  Score=57.03  Aligned_cols=74  Identities=15%  Similarity=0.193  Sum_probs=58.9

Q ss_pred             CCCCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCC--C--CcEEEEeCCCCCceeEEEecCCCeEEEEeCCCCeEEE
Q psy959           19 AIPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAG--S--LKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIER   94 (109)
Q Consensus        19 ~l~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG--~--~~~~l~~~~~~~p~glaiD~~~~~lYw~D~~~~~I~~   94 (109)
                      .+..|.+|  ++..++||++|..    ..+|.+.++++  +  .++++..  +..|.||++|+. ++||.++...++|.+
T Consensus       167 ~~~~pngi--s~dg~~lyv~d~~----~~~I~~~~~~~~g~~~~~~~~~~--~~~P~gi~vd~d-G~l~va~~~~~~V~~  237 (306)
T 2p4o_A          167 VFPAANGL--KRFGNFLYVSNTE----KMLLLRIPVDSTDKPGEPEIFVE--QTNIDDFAFDVE-GNLYGATHIYNSVVR  237 (306)
T ss_dssp             CSCSEEEE--EEETTEEEEEETT----TTEEEEEEBCTTSCBCCCEEEEE--SCCCSSEEEBTT-CCEEEECBTTCCEEE
T ss_pred             CCCcCCCc--CcCCCEEEEEeCC----CCEEEEEEeCCCCCCCccEEEec--cCCCCCeEECCC-CCEEEEeCCCCeEEE
Confidence            45678898  5547899999987    68999999985  2  2444443  468999999975 589999999999999


Q ss_pred             EeCCCCC
Q psy959           95 SDLAGNN  101 (109)
Q Consensus        95 ~~~dG~~  101 (109)
                      .+.+|+.
T Consensus       238 ~~~~G~~  244 (306)
T 2p4o_A          238 IAPDRST  244 (306)
T ss_dssp             ECTTCCE
T ss_pred             ECCCCCE
Confidence            9998864

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=98.31  E-value=1.6e-06  Score=61.87  Aligned_cols=91  Identities=8%  Similarity=0.074  Sum_probs=66.0

Q ss_pred             CCccEEEecCCCCcceEEeeCCCCe-EEEEecCCCCCCCeEEEEEcCCCCcEEEE------eCCCCCceeEEEecC---C
Q psy959           10 KTHRSLLLQAIPGRRHFMPPIRLRT-LYYTDWGRFGTAGKILRTTMAGSLKKVII------EKDLSQPSGLAIDFD---D   79 (109)
Q Consensus        10 G~~~~~li~~l~~p~~iavd~~~g~-lywsd~~~~~~~~~I~~~~~dG~~~~~l~------~~~~~~p~glaiD~~---~   79 (109)
                      |-..+++.++|..|++|+++| .|. ||+++..     .+|.+...+|...+.+.      .....-|.+|++++.   +
T Consensus         7 g~~~~~va~~l~~P~~i~~~p-dG~~l~V~e~~-----G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~   80 (353)
T 2g8s_A            7 TVNVEVLQDKLDHPWALAFLP-DNHGMLITLRG-----GELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQS   80 (353)
T ss_dssp             CSEEEEEEEEESSEEEEEECS-TTCCEEEEETT-----TEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHH
T ss_pred             CcEEEEEECCCCCcEEEEEcC-CCCEEEEEeCC-----ceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCC
Confidence            334455668899999999999 677 9999964     78999987775432221      122345789999997   8


Q ss_pred             CeEEEEeCC-------CCeEEEEeCCCC-----CeEEEE
Q psy959           80 EMLYWTDAV-------REKIERSDLAGN-----NREALY  106 (109)
Q Consensus        80 ~~lYw~D~~-------~~~I~~~~~dG~-----~~~~l~  106 (109)
                      ++||+++..       ..+|.+..+++.     ..++++
T Consensus        81 g~lYv~~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~  119 (353)
T 2g8s_A           81 RRIWLSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVF  119 (353)
T ss_dssp             CEEEEEEEEECSSSCEEEEEEEEEECTTSSBEEEEEEEE
T ss_pred             CEEEEEEeCCCCCCCceeEEEEEEECCCCCCCCceEEEE
Confidence            999999864       458988888754     355554

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=98.28  E-value=1.4e-05  Score=57.46  Aligned_cols=83  Identities=17%  Similarity=0.097  Sum_probs=62.9

Q ss_pred             ccEEEecCCCCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCCcEEEEe------CCCCCceeEEEecC---CCeE
Q psy959           12 HRSLLLQAIPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIE------KDLSQPSGLAIDFD---DEML   82 (109)
Q Consensus        12 ~~~~li~~l~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~~~~l~~------~~~~~p~glaiD~~---~~~l   82 (109)
                      ..+++.++|..|++|++.| .|.||+++..    ..+|.+...++.....+..      ....-|.|||++|.   ++.|
T Consensus        23 ~~~~va~gL~~P~~ia~~p-dG~llVter~----~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~l   97 (347)
T 3das_A           23 VLRTVATGLNSPWGLAPLP-GGDLLVSSRD----EATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMV   97 (347)
T ss_dssp             EEEEEECCCSSEEEEEECT-TSCEEEEETT----TCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEE
T ss_pred             eeEEeecCCCCceEEEEcC-CCcEEEEEec----CCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEE
Confidence            3455668999999999999 7899999985    4899998875433333321      23556899999985   7889


Q ss_pred             EEEeC--CCCeEEEEeCCC
Q psy959           83 YWTDA--VREKIERSDLAG   99 (109)
Q Consensus        83 Yw~D~--~~~~I~~~~~dG   99 (109)
                      |.+..  ...+|.+..+++
T Consensus        98 Yv~yt~~~~~~v~R~~~~~  116 (347)
T 3das_A           98 YAYFTSASDNRIVRMLYDE  116 (347)
T ss_dssp             EEEEECSSSEEEEEEEBCT
T ss_pred             EEEEecCCCCEEEEEEeCC
Confidence            98753  457999999887

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=98.24  E-value=1.2e-05  Score=59.39  Aligned_cols=89  Identities=19%  Similarity=0.314  Sum_probs=63.6

Q ss_pred             ccEEEecCCCCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcC-CCCcEEEEe--CCC------CCceeEEEecC---C
Q psy959           12 HRSLLLQAIPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMA-GSLKKVIIE--KDL------SQPSGLAIDFD---D   79 (109)
Q Consensus        12 ~~~~li~~l~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~d-G~~~~~l~~--~~~------~~p~glaiD~~---~   79 (109)
                      ..+++.++|..|.+|+++| .|.||+++..    ..+|.+...+ |.. ..+..  ..+      .-+.|||+++.   +
T Consensus        18 ~~~~~a~~l~~P~~~a~~p-dG~l~V~e~~----gg~I~~~~~~~g~~-~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~   91 (454)
T 1cru_A           18 DKKVILSNLNKPHALLWGP-DNQIWLTERA----TGKILRVNPESGSV-KTVFQVPEIVNDADGQNGLLGFAFHPDFKNN   91 (454)
T ss_dssp             CEEEEECCCSSEEEEEECT-TSCEEEEETT----TCEEEEECTTTCCE-EEEEECTTCCCCTTSSCSEEEEEECTTTTTS
T ss_pred             EEEEEECCCCCceEEEEcC-CCcEEEEEcC----CCEEEEEECCCCcE-eEEecCCccccccCCCCceeEEEECCCcCcC
Confidence            3455558999999999999 7899999975    4689998874 543 33332  112      23449999987   9


Q ss_pred             CeEEEEeCC------------CCeEEEEeCCCC-----CeEEEE
Q psy959           80 EMLYWTDAV------------REKIERSDLAGN-----NREALY  106 (109)
Q Consensus        80 ~~lYw~D~~------------~~~I~~~~~dG~-----~~~~l~  106 (109)
                      +.||+++..            ..+|.+..+++.     ..++|+
T Consensus        92 g~lYv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~  135 (454)
T 1cru_A           92 PYIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLL  135 (454)
T ss_dssp             CEEEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEE
T ss_pred             CEEEEEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEE
Confidence            999999863            358999888653     345555

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=98.21  E-value=5e-06  Score=58.19  Aligned_cols=78  Identities=15%  Similarity=0.175  Sum_probs=59.9

Q ss_pred             CCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCCc--EEEEeCCCCCceeEEEecCCCeEEEEe----CCCCeEEE
Q psy959           21 PGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLK--KVIIEKDLSQPSGLAIDFDDEMLYWTD----AVREKIER   94 (109)
Q Consensus        21 ~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~~--~~l~~~~~~~p~glaiD~~~~~lYw~D----~~~~~I~~   94 (109)
                      ..|.+++++|..++||+++       ..|.+.+.+....  ..++......|.++++|+.+++||.++    ...+.|.+
T Consensus       225 ~~p~~la~~~d~~~lyv~~-------~~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v  297 (328)
T 3dsm_A          225 DWPSEVQLNGTRDTLYWIN-------NDIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYR  297 (328)
T ss_dssp             CCCEEEEECTTSCEEEEES-------SSEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEE
T ss_pred             CCceeEEEecCCCEEEEEc-------cEEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEE
Confidence            4799999999889999985       2788888754332  111222246899999999999999999    77889999


Q ss_pred             EeCCCCCeEEE
Q psy959           95 SDLAGNNREAL  105 (109)
Q Consensus        95 ~~~dG~~~~~l  105 (109)
                      .+.+|+..+.+
T Consensus       298 ~d~~g~~~~~i  308 (328)
T 3dsm_A          298 YSPQGKLIDEF  308 (328)
T ss_dssp             ECTTCCEEEEE
T ss_pred             ECCCCCEEEEE
Confidence            99998766554

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=98.20  E-value=5.1e-06  Score=59.90  Aligned_cols=77  Identities=13%  Similarity=0.110  Sum_probs=59.8

Q ss_pred             CCCCcceEEeeCCCCeEEEEecCC-------------CCCCCeEEEEEcCCCCcEEEEeCCCCCceeEEEecCCCeEEEE
Q psy959           19 AIPGRRHFMPPIRLRTLYYTDWGR-------------FGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWT   85 (109)
Q Consensus        19 ~l~~p~~iavd~~~g~lywsd~~~-------------~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glaiD~~~~~lYw~   85 (109)
                      .+..|+.+++|+ .|.+|.++..-             ....+.+++.+..  ..+++ ..++..|+||++++..+.||++
T Consensus       163 ~~~~pND~~v~~-~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~--~~~~~-~~~l~~pNGia~spDg~~lYva  238 (355)
T 3sre_A          163 LLPSVNDIVAVG-PEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN--DVRVV-AEGFDFANGINISPDGKYVYIA  238 (355)
T ss_dssp             TCSSEEEEEEEE-TTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT--CCEEE-EEEESSEEEEEECTTSSEEEEE
T ss_pred             CCCCCceEEEeC-CCCEEecCCcEeCCcccccchhhccCCccEEEEEECC--eEEEe-ecCCcccCcceECCCCCEEEEE
Confidence            378899999999 78888776420             0124678887652  34443 4568999999999999999999


Q ss_pred             eCCCCeEEEEeCCC
Q psy959           86 DAVREKIERSDLAG   99 (109)
Q Consensus        86 D~~~~~I~~~~~dG   99 (109)
                      |....+|.+.++++
T Consensus       239 dt~~~~I~~~~~~~  252 (355)
T 3sre_A          239 ELLAHKIHVYEKHA  252 (355)
T ss_dssp             EGGGTEEEEEEECT
T ss_pred             eCCCCeEEEEEECC
Confidence            99999999999874

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=98.19  E-value=6.2e-05  Score=51.83  Aligned_cols=83  Identities=14%  Similarity=0.051  Sum_probs=63.6

Q ss_pred             ecCCCCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCCcEEEEeCCCCCceeEEEecCCCeEEEEeCCC----CeE
Q psy959           17 LQAIPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVR----EKI   92 (109)
Q Consensus        17 i~~l~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glaiD~~~~~lYw~D~~~----~~I   92 (109)
                      ......|.++++|+ .|.|||++..    ...|.+.+.++...+.+.......|.+|++|+. ++||+++...    ..|
T Consensus        41 ~~~~~~~~~~~~~~-~g~l~~~~~~----~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~d-g~l~v~~~~~~~~~~~i  114 (333)
T 2dg1_A           41 SKKGLQLEGLNFDR-QGQLFLLDVF----EGNIFKINPETKEIKRPFVSHKANPAAIKIHKD-GRLFVCYLGDFKSTGGI  114 (333)
T ss_dssp             ESSCCCEEEEEECT-TSCEEEEETT----TCEEEEECTTTCCEEEEEECSSSSEEEEEECTT-SCEEEEECTTSSSCCEE
T ss_pred             eccCccccCcEECC-CCCEEEEECC----CCEEEEEeCCCCcEEEEeeCCCCCcceEEECCC-CcEEEEeCCCCCCCceE
Confidence            34567899999998 7889999876    579999998866655554334567999999965 5788888765    689


Q ss_pred             EEEeCCCCCeEEE
Q psy959           93 ERSDLAGNNREAL  105 (109)
Q Consensus        93 ~~~~~dG~~~~~l  105 (109)
                      .+.+.++...+.+
T Consensus       115 ~~~d~~~~~~~~~  127 (333)
T 2dg1_A          115 FAATENGDNLQDI  127 (333)
T ss_dssp             EEECTTSCSCEEE
T ss_pred             EEEeCCCCEEEEE
Confidence            9999888766533

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=98.15  E-value=4.2e-05  Score=51.99  Aligned_cols=83  Identities=23%  Similarity=0.223  Sum_probs=61.4

Q ss_pred             ccEEEecCCCCcceEEeeCCCCeEEEE-------ecCCCCCCCeEEEEEcCCCCcEEEEeC----CCCCceeEEEecCCC
Q psy959           12 HRSLLLQAIPGRRHFMPPIRLRTLYYT-------DWGRFGTAGKILRTTMAGSLKKVIIEK----DLSQPSGLAIDFDDE   80 (109)
Q Consensus        12 ~~~~li~~l~~p~~iavd~~~g~lyws-------d~~~~~~~~~I~~~~~dG~~~~~l~~~----~~~~p~glaiD~~~~   80 (109)
                      ..+.+..++..|.++++|+ .|.+|++       +..    ...|.+.+.+....+.+...    ....|.++++|+..+
T Consensus         9 ~~~~~~~~~~~~~~~~~~~-~g~l~~~~~~~~~~~~~----~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g   83 (314)
T 1pjx_A            9 LFTKVTEDIPGAEGPVFDK-NGDFYIVAPEVEVNGKP----AGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDAN   83 (314)
T ss_dssp             CCEEEECCCTTCEEEEECT-TSCEEEEETTCEETTEE----CCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSS
T ss_pred             hHhhhhccCCCccCceECC-CCCEEEEEeccccCCCC----CCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCC
Confidence            3455668899999999996 8899999       655    57899988654443333320    235799999998768


Q ss_pred             eEEEEeCCCCeEEEEeCCCC
Q psy959           81 MLYWTDAVREKIERSDLAGN  100 (109)
Q Consensus        81 ~lYw~D~~~~~I~~~~~dG~  100 (109)
                      +||+++... .|.+.+.+|+
T Consensus        84 ~l~v~~~~~-~l~~~d~~g~  102 (314)
T 1pjx_A           84 QLFVADMRL-GLLVVQTDGT  102 (314)
T ss_dssp             EEEEEETTT-EEEEEETTSC
T ss_pred             cEEEEECCC-CEEEEeCCCC
Confidence            999998754 7888888754

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=98.13  E-value=8.8e-06  Score=58.18  Aligned_cols=71  Identities=21%  Similarity=0.130  Sum_probs=54.6

Q ss_pred             CCCcceEEeeCCCCeEEEEecCCC---------CCCCeEEEEEcCCCC-------cEEEEeCCCCCceeEEEecCCCeEE
Q psy959           20 IPGRRHFMPPIRLRTLYYTDWGRF---------GTAGKILRTTMAGSL-------KKVIIEKDLSQPSGLAIDFDDEMLY   83 (109)
Q Consensus        20 l~~p~~iavd~~~g~lywsd~~~~---------~~~~~I~~~~~dG~~-------~~~l~~~~~~~p~glaiD~~~~~lY   83 (109)
                      ...|.+|+++| .|+||++.....         ....+|.|.+.||+.       ...++..++..|.||++|+.++.||
T Consensus       134 ~h~~~~l~~~p-DG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~~~i~a~G~rnp~Gla~d~~~g~l~  212 (354)
T 3a9g_A          134 IHNGGRIRFGP-DGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPNSPIWSYGHRNPQGIDWHRASGVMV  212 (354)
T ss_dssp             SCCCCCEEECT-TSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTTCCEEEECCSCCCEEEECTTTCCEE
T ss_pred             CcCCceEEECC-CCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCCCcEEEEccCCcceEEEeCCCCCEE
Confidence            34688999999 889999964210         114689999999972       2234456789999999999899999


Q ss_pred             EEeCCCCe
Q psy959           84 WTDAVREK   91 (109)
Q Consensus        84 w~D~~~~~   91 (109)
                      .+|.+...
T Consensus       213 v~d~g~~~  220 (354)
T 3a9g_A          213 ATEHGPVG  220 (354)
T ss_dssp             EEECCSSS
T ss_pred             EEecCCCC
Confidence            99997543

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.13  E-value=4.4e-05  Score=52.66  Aligned_cols=75  Identities=13%  Similarity=0.136  Sum_probs=57.0

Q ss_pred             CCCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCCcEEEEeC--------CCCCceeEEEecCCCeEEEEeCCCCe
Q psy959           20 IPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEK--------DLSQPSGLAIDFDDEMLYWTDAVREK   91 (109)
Q Consensus        20 l~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~~~~l~~~--------~~~~p~glaiD~~~~~lYw~D~~~~~   91 (109)
                      +..+.+|++||.++++|.....    ...+...+.+|.....+.-.        .+.+|.|||+|+. ++||.+... ..
T Consensus       172 ~~d~S~l~~dp~tg~lliLS~~----s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~-G~lyIvsE~-n~  245 (255)
T 3qqz_A          172 LDDVSGAEFNQQKNTLLVLSHE----SRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDAS-GNIYIVSEP-NR  245 (255)
T ss_dssp             SSCCCEEEEETTTTEEEEEETT----TTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTT-CCEEEEETT-TE
T ss_pred             cCCceeEEEcCCCCeEEEEECC----CCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECCC-CCEEEEcCC-ce
Confidence            4678999999999999999876    68999999999855544322        2469999999975 579999654 47


Q ss_pred             EEEEeCCCC
Q psy959           92 IERSDLAGN  100 (109)
Q Consensus        92 I~~~~~dG~  100 (109)
                      ++++.-+++
T Consensus       246 ~y~f~~~~~  254 (255)
T 3qqz_A          246 FYRFTPQSS  254 (255)
T ss_dssp             EEEEEC---
T ss_pred             EEEEEecCC
Confidence            887766543

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.13  E-value=2.2e-05  Score=56.26  Aligned_cols=71  Identities=14%  Similarity=0.030  Sum_probs=58.9

Q ss_pred             CcceEEeeCCCCeEEEEecCCCCCC-CeEEEEEcCCCCcEEEEeCC-----CCCceeEEEecCCCeEEEEeCCCCeEEEE
Q psy959           22 GRRHFMPPIRLRTLYYTDWGRFGTA-GKILRTTMAGSLKKVIIEKD-----LSQPSGLAIDFDDEMLYWTDAVREKIERS   95 (109)
Q Consensus        22 ~p~~iavd~~~g~lywsd~~~~~~~-~~I~~~~~dG~~~~~l~~~~-----~~~p~glaiD~~~~~lYw~D~~~~~I~~~   95 (109)
                      .|.++++|+ .|+.|.++..    . +.|.+.+.||+....+....     ..-++||++++.+..|+..+. .+++.++
T Consensus       138 ~~nDvavD~-~GnaYVt~s~----~~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~-~g~L~~f  211 (334)
T 2p9w_A          138 GVVQSAQDR-DGNSYVAFAL----GMPAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGG-PRALTAF  211 (334)
T ss_dssp             EEEEEEECT-TSCEEEEEEE----SSCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESS-SSSEEEE
T ss_pred             CCceeEECC-CCCEEEeCCC----CCCeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcC-CCeEEEE
Confidence            478999999 8999999987    6 89999999999766554321     122779999999999999999 8899998


Q ss_pred             eCC
Q psy959           96 DLA   98 (109)
Q Consensus        96 ~~d   98 (109)
                      +++
T Consensus       212 D~~  214 (334)
T 2p9w_A          212 DVS  214 (334)
T ss_dssp             ECS
T ss_pred             cCC
Confidence            876

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=98.12  E-value=1.6e-05  Score=56.76  Aligned_cols=77  Identities=14%  Similarity=0.142  Sum_probs=57.1

Q ss_pred             ccEEEecCC-------CCcceEEeeCCCCeEEEEecCCC---------CCCCeEEEEEcCCCC------------cEEEE
Q psy959           12 HRSLLLQAI-------PGRRHFMPPIRLRTLYYTDWGRF---------GTAGKILRTTMAGSL------------KKVII   63 (109)
Q Consensus        12 ~~~~li~~l-------~~p~~iavd~~~g~lywsd~~~~---------~~~~~I~~~~~dG~~------------~~~l~   63 (109)
                      ..+++++.+       ..|.+|+++| .|+||++.....         ...++|.|.+.||+.            ...++
T Consensus       114 ~~~~i~~~~p~~~~~~h~~~~l~~~p-dG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~  192 (353)
T 2g8s_A          114 DFRTVFRQMPKLSTGNHFGGRLVFDG-KGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPDDNPFIKESGVRAEIW  192 (353)
T ss_dssp             EEEEEEECSSCCBSSSCCCCCEEECS-SSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCTTCTTTTSTTSCTTEE
T ss_pred             ceEEEEEECCCCCCCcccCccEEECC-CCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCCCCCCcCCCCCCccEE
Confidence            345565433       3478999999 889999974310         113689999999972            23345


Q ss_pred             eCCCCCceeEEEecCCCeEEEEeCCC
Q psy959           64 EKDLSQPSGLAIDFDDEMLYWTDAVR   89 (109)
Q Consensus        64 ~~~~~~p~glaiD~~~~~lYw~D~~~   89 (109)
                      ...+..|.||++|+.+++||.+|.+.
T Consensus       193 a~G~rnp~gl~~d~~~g~l~~~d~g~  218 (353)
T 2g8s_A          193 SYGIRNPQGMAMNPWSNALWLNEHGP  218 (353)
T ss_dssp             EECCSEEEEEEEETTTTEEEEEEECS
T ss_pred             EEcCcCccceEEECCCCCEEEEecCC
Confidence            56788999999999899999999874

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=98.04  E-value=0.00024  Score=48.74  Aligned_cols=83  Identities=13%  Similarity=-0.029  Sum_probs=62.6

Q ss_pred             EEe-cCCCCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCCcEEEEeCCCCCceeEEEecCCCeEEEEeCCCCeEE
Q psy959           15 LLL-QAIPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIE   93 (109)
Q Consensus        15 ~li-~~l~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glaiD~~~~~lYw~D~~~~~I~   93 (109)
                      .++ .....+.|.+.|+..+.|||+|..    ..+|.+.+.++...+.+..  -..|.++++++..+ ||.+.  ...|.
T Consensus         6 ~~~~~~~~~~Egp~w~~~~~~l~~~d~~----~~~i~~~d~~~~~~~~~~~--~~~~~~i~~~~dG~-l~v~~--~~~l~   76 (297)
T 3g4e_A            6 CVLPENCRCGESPVWEEVSNSLLFVDIP----AKKVCRWDSFTKQVQRVTM--DAPVSSVALRQSGG-YVATI--GTKFC   76 (297)
T ss_dssp             EEECCCCSBEEEEEEETTTTEEEEEETT----TTEEEEEETTTCCEEEEEC--SSCEEEEEEBTTSS-EEEEE--TTEEE
T ss_pred             EEeccCCccccCCeEECCCCEEEEEECC----CCEEEEEECCCCcEEEEeC--CCceEEEEECCCCC-EEEEE--CCeEE
Confidence            444 578889999999999999999987    6899999998766554432  35799999997665 66665  46788


Q ss_pred             EEeCCCCCeEEEE
Q psy959           94 RSDLAGNNREALY  106 (109)
Q Consensus        94 ~~~~dG~~~~~l~  106 (109)
                      +.+.++...+.+.
T Consensus        77 ~~d~~~g~~~~~~   89 (297)
T 3g4e_A           77 ALNWKEQSAVVLA   89 (297)
T ss_dssp             EEETTTTEEEEEE
T ss_pred             EEECCCCcEEEEE
Confidence            8888755544443

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.04  E-value=8.5e-06  Score=57.29  Aligned_cols=63  Identities=17%  Similarity=0.156  Sum_probs=50.7

Q ss_pred             CCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEc-CCCCcEEEEeC-CCCCceeEEEecCCCeEEEEeCCCC
Q psy959           21 PGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTM-AGSLKKVIIEK-DLSQPSGLAIDFDDEMLYWTDAVRE   90 (109)
Q Consensus        21 ~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~-dG~~~~~l~~~-~~~~p~glaiD~~~~~lYw~D~~~~   90 (109)
                      ..|.++++|+ .|+||.+++.    ..+|.+.+. +|.. ..+... .+..|.++++++. ++||.++...+
T Consensus       248 g~pdgia~d~-~G~l~va~~~----~~~V~~~d~~~G~~-~~~~~~~~~~~p~~va~~~~-g~l~v~~~~~~  312 (343)
T 2qe8_A          248 PICDGISIDK-DHNIYVGDLA----HSAIGVITSADRAY-KLLVTDEKLSWTDSFNFGSD-GYLYFDCNQLH  312 (343)
T ss_dssp             CSCSCEEECT-TCCEEEEEGG----GTEEEEEETTTTEE-EEEEECGGGSCEEEEEECTT-SCEEEEECCGG
T ss_pred             CCCceEEECC-CCCEEEEccC----CCeEEEEECCCCCE-EEEEECCceecCCeeEECCC-CcEEEEeCccc
Confidence            4789999999 7999999998    689999999 7764 444443 3788999999975 78999987543

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=98.03  E-value=4.9e-05  Score=54.12  Aligned_cols=80  Identities=24%  Similarity=0.245  Sum_probs=59.2

Q ss_pred             CCCCcceEEeeCC---CCeEEEEecCCCC-CCCeEEEEEcCCC---CcEEEEe------CCCCCceeEEEecCCCeEEEE
Q psy959           19 AIPGRRHFMPPIR---LRTLYYTDWGRFG-TAGKILRTTMAGS---LKKVIIE------KDLSQPSGLAIDFDDEMLYWT   85 (109)
Q Consensus        19 ~l~~p~~iavd~~---~g~lywsd~~~~~-~~~~I~~~~~dG~---~~~~l~~------~~~~~p~glaiD~~~~~lYw~   85 (109)
                      ++..|.+||++|.   ++.||+++....+ ...+|.+...++.   ..++++.      ...+.|.+|++++. ++||++
T Consensus        73 g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pd-G~Lyv~  151 (352)
T 2ism_A           73 GESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPD-GMLYVT  151 (352)
T ss_dssp             TTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTT-SCEEEE
T ss_pred             CCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCC-CCEEEE
Confidence            4678999999997   7999999975210 0168999998864   2344443      23567899999985 489999


Q ss_pred             eCC-------------CCeEEEEeCCC
Q psy959           86 DAV-------------REKIERSDLAG   99 (109)
Q Consensus        86 D~~-------------~~~I~~~~~dG   99 (109)
                      +..             .++|.+++.||
T Consensus       152 ~G~~~~~~~~~d~~~~~g~I~ri~~dG  178 (352)
T 2ism_A          152 TGEVYERELAQDLASLGGKILRLTPEG  178 (352)
T ss_dssp             CCCTTCGGGGGCTTCSSSEEEEECTTS
T ss_pred             ECCCCCCccccCCCCCceEEEEEcCCC
Confidence            742             36999999998

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=98.02  E-value=0.00023  Score=48.38  Aligned_cols=82  Identities=11%  Similarity=0.106  Sum_probs=60.9

Q ss_pred             EEecCCCCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcC--CCC---cEEEEeCCCCCceeEEEecCCCeEEEEeCCC
Q psy959           15 LLLQAIPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMA--GSL---KKVIIEKDLSQPSGLAIDFDDEMLYWTDAVR   89 (109)
Q Consensus        15 ~li~~l~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~d--G~~---~~~l~~~~~~~p~glaiD~~~~~lYw~D~~~   89 (109)
                      .+...+..|.+++++|....+ |++..    ..+|.+.+++  |+.   .+++ ......|.+|++|+.. +||.+.  .
T Consensus       166 ~~~~~~~~~~gi~~s~dg~~l-v~~~~----~~~i~~~~~~~~g~~~~~~~~~-~~~~~~p~~i~~d~~G-~l~v~~--~  236 (296)
T 3e5z_A          166 APIRDRVKPNGLAFLPSGNLL-VSDTG----DNATHRYCLNARGETEYQGVHF-TVEPGKTDGLRVDAGG-LIWASA--G  236 (296)
T ss_dssp             EEECCCSSEEEEEECTTSCEE-EEETT----TTEEEEEEECSSSCEEEEEEEE-CCSSSCCCSEEEBTTS-CEEEEE--T
T ss_pred             EeecCCCCCccEEECCCCCEE-EEeCC----CCeEEEEEECCCCcCcCCCeEe-eCCCCCCCeEEECCCC-CEEEEc--C
Confidence            344677889999999955555 99987    5899999985  443   3444 4445689999999654 688887  6


Q ss_pred             CeEEEEeCCCCCeEEE
Q psy959           90 EKIERSDLAGNNREAL  105 (109)
Q Consensus        90 ~~I~~~~~dG~~~~~l  105 (109)
                      +.|.+.+.+|.....+
T Consensus       237 ~~v~~~~~~g~~~~~~  252 (296)
T 3e5z_A          237 DGVHVLTPDGDELGRV  252 (296)
T ss_dssp             TEEEEECTTSCEEEEE
T ss_pred             CeEEEECCCCCEEEEE
Confidence            7899999888765544

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=97.92  E-value=0.00027  Score=48.56  Aligned_cols=92  Identities=15%  Similarity=0.114  Sum_probs=63.5

Q ss_pred             CCCccEEEecCCCCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEc--CCCCcEE-----EEe-CCCCCceeEEEecCCC
Q psy959            9 LKTHRSLLLQAIPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTM--AGSLKKV-----IIE-KDLSQPSGLAIDFDDE   80 (109)
Q Consensus         9 ~G~~~~~li~~l~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~--dG~~~~~-----l~~-~~~~~p~glaiD~~~~   80 (109)
                      ++...+.+...+..|.++++++....||+++..    ...|.+.++  +|.....     ... .....|.+|++|+. +
T Consensus       170 ~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~----~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~-G  244 (333)
T 2dg1_A          170 DFRTVTPIIQNISVANGIALSTDEKVLWVTETT----ANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSD-D  244 (333)
T ss_dssp             TSCCEEEEEEEESSEEEEEECTTSSEEEEEEGG----GTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTT-C
T ss_pred             CCCEEEEeecCCCcccceEECCCCCEEEEEeCC----CCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCC-C
Confidence            333333444556679999999965679999876    579999998  4543322     111 12247999999975 5


Q ss_pred             eEEEEeCCCCeEEEEeCCCCCeEEE
Q psy959           81 MLYWTDAVREKIERSDLAGNNREAL  105 (109)
Q Consensus        81 ~lYw~D~~~~~I~~~~~dG~~~~~l  105 (109)
                      +||.++...+.|.+.+.+|...+.+
T Consensus       245 ~l~v~~~~~~~v~~~d~~g~~~~~~  269 (333)
T 2dg1_A          245 NLYVAMYGQGRVLVFNKRGYPIGQI  269 (333)
T ss_dssp             CEEEEEETTTEEEEECTTSCEEEEE
T ss_pred             CEEEEEcCCCEEEEECCCCCEEEEE
Confidence            7888887778899998887654443

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=97.91  E-value=0.00015  Score=49.18  Aligned_cols=74  Identities=18%  Similarity=0.197  Sum_probs=60.3

Q ss_pred             CCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcC-CCCcEEEEeCCCCCceeEEEecCCCeEEEEeCCCCeEEEEeCCC
Q psy959           21 PGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMA-GSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIERSDLAG   99 (109)
Q Consensus        21 ~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~d-G~~~~~l~~~~~~~p~glaiD~~~~~lYw~D~~~~~I~~~~~dG   99 (109)
                      ..|.++++|+ .|++|+++..    ...|.+.+.+ |.....+. .....|.++++++..+.||.++...+.|.+.+.+.
T Consensus       226 ~~p~~i~~d~-~G~l~v~~~~----~~~i~~~d~~~g~~~~~~~-~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          226 GGADGMDFDE-DNNLLVANWG----SSHIEVFGPDGGQPKMRIR-CPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             CEEEEEEEBT-TCCEEEEEET----TTEEEEECTTCBSCSEEEE-CSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             CCCCceEECC-CCCEEEEEcC----CCEEEEEcCCCCcEeEEEe-CCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence            5689999998 8899999876    5799999988 76655553 33478999999988878999998888999988764


Q ss_pred             C
Q psy959          100 N  100 (109)
Q Consensus       100 ~  100 (109)
                      .
T Consensus       300 ~  300 (314)
T 1pjx_A          300 N  300 (314)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=97.91  E-value=0.00023  Score=49.68  Aligned_cols=76  Identities=16%  Similarity=0.157  Sum_probs=54.3

Q ss_pred             CCCcceEEeeCCCCeEEEEecCCCC------CCCeEEEEEcCCCC-cEEEEeCCCCCceeEEEecCCCeEEEEeCCCCeE
Q psy959           20 IPGRRHFMPPIRLRTLYYTDWGRFG------TAGKILRTTMAGSL-KKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKI   92 (109)
Q Consensus        20 l~~p~~iavd~~~g~lywsd~~~~~------~~~~I~~~~~dG~~-~~~l~~~~~~~p~glaiD~~~~~lYw~D~~~~~I   92 (109)
                      -..|.++++|+ .|++|++..+...      ....|.+.+.+... ...+.......|++|++++..++||.++.   .|
T Consensus       171 g~~p~~i~~~~-dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~---~v  246 (328)
T 3dsm_A          171 GIQPTSLVMDK-YNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN---DI  246 (328)
T ss_dssp             SSCBCCCEECT-TSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS---SE
T ss_pred             CCCccceEEcC-CCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc---EE
Confidence            35799999999 7889999875200      01689998876333 33332222358999999999999999986   77


Q ss_pred             EEEeCCC
Q psy959           93 ERSDLAG   99 (109)
Q Consensus        93 ~~~~~dG   99 (109)
                      ...+.+.
T Consensus       247 ~~~d~~t  253 (328)
T 3dsm_A          247 WRMPVEA  253 (328)
T ss_dssp             EEEETTC
T ss_pred             EEEECCC
Confidence            7777654

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.83  E-value=9.5e-05  Score=53.24  Aligned_cols=69  Identities=10%  Similarity=-0.026  Sum_probs=53.7

Q ss_pred             ccEEEecCCCCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCC----cEEEEeCCCCCceeEEEecCCCeEEEEe
Q psy959           12 HRSLLLQAIPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSL----KKVIIEKDLSQPSGLAIDFDDEMLYWTD   86 (109)
Q Consensus        12 ~~~~li~~l~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~----~~~l~~~~~~~p~glaiD~~~~~lYw~D   86 (109)
                      ..+++.+++..|+||++.|..+.||++|..    ..+|.+.++++..    ++++ . .-..|.|+++|..++.||.+.
T Consensus       212 ~~~~~~~~l~~pNGia~spDg~~lYvadt~----~~~I~~~~~~~~g~l~~~~~~-~-~~g~PDGi~vD~e~G~lwva~  284 (355)
T 3sre_A          212 DVRVVAEGFDFANGINISPDGKYVYIAELL----AHKIHVYEKHANWTLTPLRVL-S-FDTLVDNISVDPVTGDLWVGC  284 (355)
T ss_dssp             CCEEEEEEESSEEEEEECTTSSEEEEEEGG----GTEEEEEEECTTSCEEEEEEE-E-CSSEEEEEEECTTTCCEEEEE
T ss_pred             eEEEeecCCcccCcceECCCCCEEEEEeCC----CCeEEEEEECCCCcEecCEEE-e-CCCCCceEEEeCCCCcEEEEe
Confidence            455667889999999999988899999987    6899999986432    3344 3 246899999997667877744

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=97.80  E-value=0.003  Score=43.13  Aligned_cols=79  Identities=14%  Similarity=0.013  Sum_probs=58.3

Q ss_pred             CCCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCC-cEEEEeCCCC--------CceeEEEecCCCeEEEEeC-CC
Q psy959           20 IPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSL-KKVIIEKDLS--------QPSGLAIDFDDEMLYWTDA-VR   89 (109)
Q Consensus        20 l~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~-~~~l~~~~~~--------~p~glaiD~~~~~lYw~D~-~~   89 (109)
                      -..|.++++++..+++|+++..    ...|...+.+... ...+-.....        .|.++++++..+++|.++. ..
T Consensus        88 ~~~~~~~~~s~dg~~l~v~~~~----~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~  163 (353)
T 3vgz_A           88 DLKPFGATINNTTQTLWFGNTV----NSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKE  163 (353)
T ss_dssp             SSCCCSEEEETTTTEEEEEETT----TTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSS
T ss_pred             CCCcceEEECCCCCEEEEEecC----CCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCC
Confidence            3568999999977789999986    5799999986444 3443322212        2889999999999999995 46


Q ss_pred             CeEEEEeCCCCCe
Q psy959           90 EKIERSDLAGNNR  102 (109)
Q Consensus        90 ~~I~~~~~dG~~~  102 (109)
                      +.|...+.+....
T Consensus       164 ~~i~~~d~~~~~~  176 (353)
T 3vgz_A          164 SVIWVVDGGNIKL  176 (353)
T ss_dssp             CEEEEEETTTTEE
T ss_pred             ceEEEEcCCCCce
Confidence            7788888765443

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=97.77  E-value=0.00056  Score=47.63  Aligned_cols=83  Identities=17%  Similarity=0.195  Sum_probs=61.0

Q ss_pred             ecCCCCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcC---C-C--CcEEEEeC--CCCCceeEEEecCCCeEEEEeCC
Q psy959           17 LQAIPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMA---G-S--LKKVIIEK--DLSQPSGLAIDFDDEMLYWTDAV   88 (109)
Q Consensus        17 i~~l~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~d---G-~--~~~~l~~~--~~~~p~glaiD~~~~~lYw~D~~   88 (109)
                      ...+..|.++++++....|||++..    ...|.+.+.+   | .  .++++...  ....|.++++|.. +.||.+...
T Consensus       175 ~~~~~~~~~i~~s~dg~~lyv~~~~----~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~-G~lwva~~~  249 (326)
T 2ghs_A          175 FADISIPNSICFSPDGTTGYFVDTK----VNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAE-GHIWNARWG  249 (326)
T ss_dssp             EEEESSEEEEEECTTSCEEEEEETT----TCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTT-SCEEEEEET
T ss_pred             eCCCcccCCeEEcCCCCEEEEEECC----CCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCC-CCEEEEEeC
Confidence            3456778999999977789999976    5899999985   5 2  23444432  2457999999965 478888877


Q ss_pred             CCeEEEEeCCCCCeEE
Q psy959           89 REKIERSDLAGNNREA  104 (109)
Q Consensus        89 ~~~I~~~~~dG~~~~~  104 (109)
                      .+.|.+.+.+|...+.
T Consensus       250 ~~~v~~~d~~g~~~~~  265 (326)
T 2ghs_A          250 EGAVDRYDTDGNHIAR  265 (326)
T ss_dssp             TTEEEEECTTCCEEEE
T ss_pred             CCEEEEECCCCCEEEE
Confidence            7889999887765443

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=97.75  E-value=0.00013  Score=52.37  Aligned_cols=76  Identities=20%  Similarity=0.158  Sum_probs=56.8

Q ss_pred             ccEEEecCC-----CCcceEEeeCCCCeEEEEecCC---------CCCCCeEEEEEcCCC--------CcEEEEeCCCCC
Q psy959           12 HRSLLLQAI-----PGRRHFMPPIRLRTLYYTDWGR---------FGTAGKILRTTMAGS--------LKKVIIEKDLSQ   69 (109)
Q Consensus        12 ~~~~li~~l-----~~p~~iavd~~~g~lywsd~~~---------~~~~~~I~~~~~dG~--------~~~~l~~~~~~~   69 (109)
                      ..++|++.+     ..+..|+++| .|+||++-...         ....++|.|.+.||+        .. .++..++.+
T Consensus       126 ~~~~i~~~~p~~~~H~g~~l~fgp-DG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nPf~~~-~i~a~G~RN  203 (347)
T 3das_A          126 APDTVFRGIPKGVIHNGGRIAFGP-DKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNPFPGS-PVYSYGHRN  203 (347)
T ss_dssp             CCEEEEEEECCCSSCCCCCEEECT-TSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCSSTTC-CEEEBCCSB
T ss_pred             CcEEEEEcCCCCCCccCccccCCC-CCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCCCCCC-eEEeeCCCC
Confidence            356666433     3566799999 88999995311         112589999999998        43 356678999


Q ss_pred             ceeEEEecCCCeEEEEeCCCC
Q psy959           70 PSGLAIDFDDEMLYWTDAVRE   90 (109)
Q Consensus        70 p~glaiD~~~~~lYw~D~~~~   90 (109)
                      |.||++|+ .+.||.+|.+..
T Consensus       204 p~Gla~dp-~G~L~~~d~g~~  223 (347)
T 3das_A          204 VQGLAWDD-KQRLFASEFGQD  223 (347)
T ss_dssp             CCEEEECT-TCCEEEEECCSS
T ss_pred             cceEEECC-CCCEEEEecCCC
Confidence            99999999 699999998753

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=97.72  E-value=0.00049  Score=47.95  Aligned_cols=73  Identities=22%  Similarity=0.302  Sum_probs=55.1

Q ss_pred             CcceEEeeCCCCeEEEEecCCC--CCCCeEEEEEcCCCCcEEEEeCCCCCceeEEEecCCCeEEEEeCCCCeEEEEeCC
Q psy959           22 GRRHFMPPIRLRTLYYTDWGRF--GTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIERSDLA   98 (109)
Q Consensus        22 ~p~~iavd~~~g~lywsd~~~~--~~~~~I~~~~~dG~~~~~l~~~~~~~p~glaiD~~~~~lYw~D~~~~~I~~~~~d   98 (109)
                      .|.++++|+ .|.+|+++....  .....|++.+ +|+... +. .....|+++++++..+.|||++.....|.+.+++
T Consensus       135 ~~~~i~~d~-~G~l~v~~~~~~~~~~~~~l~~~~-~g~~~~-~~-~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~  209 (326)
T 2ghs_A          135 RSNDGRMHP-SGALWIGTMGRKAETGAGSIYHVA-KGKVTK-LF-ADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLD  209 (326)
T ss_dssp             EEEEEEECT-TSCEEEEEEETTCCTTCEEEEEEE-TTEEEE-EE-EEESSEEEEEECTTSCEEEEEETTTCEEEEEEBC
T ss_pred             CCCCEEECC-CCCEEEEeCCCcCCCCceEEEEEe-CCcEEE-ee-CCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcc
Confidence            578899999 788988875310  0136888888 654333 22 3456799999999999999999988999999985

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=97.65  E-value=0.00019  Score=53.03  Aligned_cols=75  Identities=23%  Similarity=0.208  Sum_probs=56.3

Q ss_pred             cEEEecC-----CCCcceEEeeCCCCeEEEEecCCC----------------------------CCCCeEEEEEcCCCC-
Q psy959           13 RSLLLQA-----IPGRRHFMPPIRLRTLYYTDWGRF----------------------------GTAGKILRTTMAGSL-   58 (109)
Q Consensus        13 ~~~li~~-----l~~p~~iavd~~~g~lywsd~~~~----------------------------~~~~~I~~~~~dG~~-   58 (109)
                      .++|++.     ...+.+|++++ .|+||++-....                            ...++|.|.+.||+. 
T Consensus       131 ~~~i~~~~p~~~~H~~~~l~f~p-DG~Lyv~~Gd~~~~~~~~~~~~~~~~~~p~~~~~~aq~~~~~~G~IlRi~~dG~ip  209 (454)
T 1cru_A          131 PVDLLAGLPSSKDHQSGRLVIGP-DQKIYYTIGDQGRNQLAYLFLPNQAQHTPTQQELNGKDYHTYMGKVLRLNLDGSIP  209 (454)
T ss_dssp             EEEEEEEECCCSSCCEEEEEECT-TSCEEEEECCTTTTSGGGTTSCCCTTCCCCHHHHHTTCCTTCSSEEEEECTTSCCC
T ss_pred             cEEEEEcCCCCCCCCCCeEeECC-CCeEEEEECCCCCCCccccccccccccccccccccccCCCCCCeeEEEEeCCCCCC
Confidence            4566542     35588999999 889999954210                            014789999999982 


Q ss_pred             ---------cEEEEeCCCCCceeEEEecCCCeEEEEeCCC
Q psy959           59 ---------KKVIIEKDLSQPSGLAIDFDDEMLYWTDAVR   89 (109)
Q Consensus        59 ---------~~~l~~~~~~~p~glaiD~~~~~lYw~D~~~   89 (109)
                               +..++..++.+|.||++|+ ++.||.+|.+.
T Consensus       210 ~~Npf~~~~~~ei~a~G~RNp~gla~dp-~G~L~~~d~g~  248 (454)
T 1cru_A          210 KDNPSFNGVVSHIYTLGHRNPQGLAFTP-NGKLLQSEQGP  248 (454)
T ss_dssp             TTCCEETTEECSEEEBCCSEEEEEEECT-TSCEEEEEECS
T ss_pred             CCCCCCCCCcceEEEECCCCcceEEECC-CCCEEEEecCC
Confidence                     2345667899999999999 69999999864

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.51  E-value=0.0029  Score=43.52  Aligned_cols=75  Identities=17%  Similarity=0.079  Sum_probs=59.7

Q ss_pred             CCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCCcEEEEeCCCCCceeEEEecCCCeEEEEeCCCCeEEEEeCCCC
Q psy959           21 PGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIERSDLAGN  100 (109)
Q Consensus        21 ~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glaiD~~~~~lYw~D~~~~~I~~~~~dG~  100 (109)
                      ..+.||+.||..+.||.....    .+.|.+.+.+|...+.+...+...+.|||++ ..+++|.++.+.+++....++..
T Consensus        27 ~~lSGla~~~~~~~L~aV~d~----~~~I~~ld~~g~v~~~i~l~g~~D~EGIa~~-~~g~~~vs~E~~~~l~~~~v~~~  101 (255)
T 3qqz_A           27 NNISSLTWSAQSNTLFSTINK----PAAIVEMTTNGDLIRTIPLDFVKDLETIEYI-GDNQFVISDERDYAIYVISLTPN  101 (255)
T ss_dssp             SCEEEEEEETTTTEEEEEEET----TEEEEEEETTCCEEEEEECSSCSSEEEEEEC-STTEEEEEETTTTEEEEEEECTT
T ss_pred             cCcceeEEeCCCCEEEEEECC----CCeEEEEeCCCCEEEEEecCCCCChHHeEEe-CCCEEEEEECCCCcEEEEEcCCC
Confidence            678999999988899876555    5899999999887776655667889999998 45577778877888888776543

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=97.51  E-value=0.003  Score=43.77  Aligned_cols=74  Identities=14%  Similarity=0.107  Sum_probs=55.3

Q ss_pred             CcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCCc-------------EEEEeCCCCCceeEEEecCCCeEEEEeCC
Q psy959           22 GRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLK-------------KVIIEKDLSQPSGLAIDFDDEMLYWTDAV   88 (109)
Q Consensus        22 ~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~~-------------~~l~~~~~~~p~glaiD~~~~~lYw~D~~   88 (109)
                      .|.+++++|...+||.++..    ...|....++....             ..+.......|.++++++..++||.++..
T Consensus       156 ~~~~~~~spdg~~l~~~~~~----~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~  231 (361)
T 3scy_A          156 HLHCVRITPDGKYLLADDLG----TDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEI  231 (361)
T ss_dssp             CEEEEEECTTSSEEEEEETT----TTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETT
T ss_pred             cceEEEECCCCCEEEEEeCC----CCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCC
Confidence            34779999966679999986    57888887764331             22223345679999999999999999987


Q ss_pred             CCeEEEEeCCC
Q psy959           89 REKIERSDLAG   99 (109)
Q Consensus        89 ~~~I~~~~~dG   99 (109)
                      ...|...+++.
T Consensus       232 ~~~v~v~~~~~  242 (361)
T 3scy_A          232 GGTVIAFRYAD  242 (361)
T ss_dssp             TCEEEEEEEET
T ss_pred             CCeEEEEEecC
Confidence            78888887763

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=97.48  E-value=0.01  Score=40.34  Aligned_cols=76  Identities=9%  Similarity=0.040  Sum_probs=56.9

Q ss_pred             CCCCcceEEeeCCCCeEEEEecCCCCCCCe-EEEEEcCCCCcE-----EEEeCCCCCceeEEEecCCCeEEEEeCCCCeE
Q psy959           19 AIPGRRHFMPPIRLRTLYYTDWGRFGTAGK-ILRTTMAGSLKK-----VIIEKDLSQPSGLAIDFDDEMLYWTDAVREKI   92 (109)
Q Consensus        19 ~l~~p~~iavd~~~g~lywsd~~~~~~~~~-I~~~~~dG~~~~-----~l~~~~~~~p~glaiD~~~~~lYw~D~~~~~I   92 (109)
                      .-..|.+++++|...++|.++..    ... |...+++.....     ..+ .....|.++++++..++||.+......|
T Consensus       126 ~~~~~~~~~~spdg~~l~~~~~~----~~~~i~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~spdg~~l~v~~~~~~~v  200 (331)
T 3u4y_A          126 IPYDAVGIAISPNGNGLILIDRS----SANTVRRFKIDADGVLFDTGQEFI-SGGTRPFNITFTPDGNFAFVANLIGNSI  200 (331)
T ss_dssp             CCTTEEEEEECTTSSCEEEEEET----TTTEEEEEEECTTCCEEEEEEEEE-CSSSSEEEEEECTTSSEEEEEETTTTEE
T ss_pred             CCCCccceEECCCCCEEEEEecC----CCceEEEEEECCCCcEeecCCccc-cCCCCccceEECCCCCEEEEEeCCCCeE
Confidence            34678999999976689999886    355 777776543221     112 2345799999999999999999988899


Q ss_pred             EEEeCCC
Q psy959           93 ERSDLAG   99 (109)
Q Consensus        93 ~~~~~dG   99 (109)
                      ...+++.
T Consensus       201 ~v~d~~~  207 (331)
T 3u4y_A          201 GILETQN  207 (331)
T ss_dssp             EEEECSS
T ss_pred             EEEECCC
Confidence            9998863

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=97.46  E-value=0.0028  Score=43.66  Aligned_cols=78  Identities=17%  Similarity=0.169  Sum_probs=58.0

Q ss_pred             cCCCCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCCcEEEEe--CCCCCceeEEEecCCCeEEEEeCCCCeEEEE
Q psy959           18 QAIPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIE--KDLSQPSGLAIDFDDEMLYWTDAVREKIERS   95 (109)
Q Consensus        18 ~~l~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~~~~l~~--~~~~~p~glaiD~~~~~lYw~D~~~~~I~~~   95 (109)
                      .....|.+++++| .|.||.++...  ....|...++++...+.+..  .....|.++++++..+.||.++...+.|...
T Consensus        37 ~~~~~p~~~a~sp-dg~l~~~~~~~--~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~  113 (347)
T 3hfq_A           37 AATQNPTYLALSA-KDCLYSVDKED--DEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVM  113 (347)
T ss_dssp             EECSCCCCEEECT-TCEEEEEEEET--TEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             eccCCcceEEEcc-CCeEEEEEecC--CCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEE
Confidence            4568899999999 66799988621  14788888886544333322  2357899999999999999999877777777


Q ss_pred             eCC
Q psy959           96 DLA   98 (109)
Q Consensus        96 ~~d   98 (109)
                      +++
T Consensus       114 ~~~  116 (347)
T 3hfq_A          114 KIA  116 (347)
T ss_dssp             EEC
T ss_pred             EeC
Confidence            664

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=97.43  E-value=0.012  Score=40.05  Aligned_cols=75  Identities=12%  Similarity=0.051  Sum_probs=55.8

Q ss_pred             CCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCCcEEEEeC----CCCCceeEEEecCCCeEEEEeCCCCeEEEEe
Q psy959           21 PGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEK----DLSQPSGLAIDFDDEMLYWTDAVREKIERSD   96 (109)
Q Consensus        21 ~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~~~~l~~~----~~~~p~glaiD~~~~~lYw~D~~~~~I~~~~   96 (109)
                      ..|.+++++|..+++|.++.     ...|...++........+..    ....|.++++++..+.||.++...+.|...+
T Consensus       185 ~~~~~~~~s~dg~~l~~~~~-----~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d  259 (353)
T 3vgz_A          185 KMSTGLALDSEGKRLYTTNA-----DGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVD  259 (353)
T ss_dssp             TTCCCCEEETTTTEEEEECT-----TSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEE
T ss_pred             CccceEEECCCCCEEEEEcC-----CCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEE
Confidence            45899999998888998875     37888888754332222222    2346778999999999999998888999988


Q ss_pred             CCCC
Q psy959           97 LAGN  100 (109)
Q Consensus        97 ~dG~  100 (109)
                      ....
T Consensus       260 ~~~~  263 (353)
T 3vgz_A          260 TRNG  263 (353)
T ss_dssp             TTTC
T ss_pred             CCCC
Confidence            8543

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=97.40  E-value=0.0029  Score=43.57  Aligned_cols=73  Identities=10%  Similarity=0.091  Sum_probs=54.4

Q ss_pred             CcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCC-CcEEEE--eCCCCCceeEEEecCCCeEEEEeCCCCeEEEEeCC
Q psy959           22 GRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGS-LKKVII--EKDLSQPSGLAIDFDDEMLYWTDAVREKIERSDLA   98 (109)
Q Consensus        22 ~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~-~~~~l~--~~~~~~p~glaiD~~~~~lYw~D~~~~~I~~~~~d   98 (109)
                      .|.+++++|...+||.++..    ...|...+++.. ..+.+.  ......|.++++++..++||.++...+.|....+|
T Consensus       241 ~~~~i~~spdG~~l~v~~~~----~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d  316 (347)
T 3hfq_A          241 GAAAIRLSHDGHFLYVSNRG----YNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARD  316 (347)
T ss_dssp             EEEEEEECTTSCEEEEEEET----TTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             cceeEEECCCCCEEEEEeCC----CCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence            47789999977789999876    578888887622 222221  22245799999999999999999987888777555

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=97.38  E-value=0.0084  Score=40.55  Aligned_cols=76  Identities=11%  Similarity=0.058  Sum_probs=56.4

Q ss_pred             cCCCCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcC--CCCcEEEEe-CCCCCceeEEEecCCCeEEEEeCCCCeEEE
Q psy959           18 QAIPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMA--GSLKKVIIE-KDLSQPSGLAIDFDDEMLYWTDAVREKIER   94 (109)
Q Consensus        18 ~~l~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~d--G~~~~~l~~-~~~~~p~glaiD~~~~~lYw~D~~~~~I~~   94 (109)
                      .....|.+++++|...+||++...    ...|...+++  +...+.+.. .....|.++++++.++.||.+....+.|..
T Consensus        35 ~~~~~~~~~~~spdg~~l~~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~  110 (343)
T 1ri6_A           35 DVPGQVQPMVVSPDKRYLYVGVRP----EFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSV  110 (343)
T ss_dssp             ECSSCCCCEEECTTSSEEEEEETT----TTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEE
T ss_pred             ecCCCCceEEECCCCCEEEEeecC----CCeEEEEEecCCCCceeeccccccCCCCcEEEEcCCCCEEEEEecCCCeEEE
Confidence            445689999999977789999875    4788887776  333332221 123389999999999999999987777777


Q ss_pred             EeC
Q psy959           95 SDL   97 (109)
Q Consensus        95 ~~~   97 (109)
                      .++
T Consensus       111 ~d~  113 (343)
T 1ri6_A          111 TRL  113 (343)
T ss_dssp             EEE
T ss_pred             EEC
Confidence            776

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=97.37  E-value=0.0069  Score=41.15  Aligned_cols=77  Identities=5%  Similarity=-0.082  Sum_probs=59.5

Q ss_pred             CCCCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcC-CCC---cEEEEeCCCCCceeEEEecCCCeEEEEeCCCCeEEE
Q psy959           19 AIPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMA-GSL---KKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIER   94 (109)
Q Consensus        19 ~l~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~d-G~~---~~~l~~~~~~~p~glaiD~~~~~lYw~D~~~~~I~~   94 (109)
                      .-..|.+++++|..+++|.++..    ...|...+++ |..   ...+-  .-..|.++++++..+.||.+......|..
T Consensus       174 ~~~~~~~~~~spdg~~l~v~~~~----~~~v~v~d~~~~~~~~~~~~~~--~~~~~~~~~~spdg~~l~v~~~~~~~i~~  247 (331)
T 3u4y_A          174 GGTRPFNITFTPDGNFAFVANLI----GNSIGILETQNPENITLLNAVG--TNNLPGTIVVSRDGSTVYVLTESTVDVFN  247 (331)
T ss_dssp             SSSSEEEEEECTTSSEEEEEETT----TTEEEEEECSSTTSCEEEEEEE--CSSCCCCEEECTTSSEEEEECSSEEEEEE
T ss_pred             CCCCccceEECCCCCEEEEEeCC----CCeEEEEECCCCcccceeeecc--CCCCCceEEECCCCCEEEEEEcCCCEEEE
Confidence            34679999999966679999876    5889999986 554   33332  24689999999999999999887778888


Q ss_pred             EeCCCCC
Q psy959           95 SDLAGNN  101 (109)
Q Consensus        95 ~~~dG~~  101 (109)
                      .+.....
T Consensus       248 ~d~~~~~  254 (331)
T 3u4y_A          248 FNQLSGT  254 (331)
T ss_dssp             EETTTTE
T ss_pred             EECCCCc
Confidence            8876543

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=97.30  E-value=0.0083  Score=41.97  Aligned_cols=75  Identities=17%  Similarity=0.142  Sum_probs=55.9

Q ss_pred             CCCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcC--CCCcEEE-Ee-C-CCCCceeEEEecCCCeEEEEeCCCCeEEE
Q psy959           20 IPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMA--GSLKKVI-IE-K-DLSQPSGLAIDFDDEMLYWTDAVREKIER   94 (109)
Q Consensus        20 l~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~d--G~~~~~l-~~-~-~~~~p~glaiD~~~~~lYw~D~~~~~I~~   94 (109)
                      ...|.+++++|...+||.++.+    ...|...+++  |.....- +. . ....|.++++++..++||.+......|..
T Consensus       144 ~~~~~~~~~spdG~~l~~~~~~----~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v  219 (365)
T 1jof_A          144 NTGIHGMVFDPTETYLYSADLT----ANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICE  219 (365)
T ss_dssp             TCCEEEEEECTTSSEEEEEETT----TTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             CCcceEEEECCCCCEEEEEcCC----CCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEE
Confidence            4678999999976689999876    5789998886  3322111 12 1 14579999999999999999887778877


Q ss_pred             EeCC
Q psy959           95 SDLA   98 (109)
Q Consensus        95 ~~~d   98 (109)
                      .+++
T Consensus       220 ~~~~  223 (365)
T 1jof_A          220 YVID  223 (365)
T ss_dssp             EEEC
T ss_pred             EEEe
Confidence            7665

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.23  E-value=0.0058  Score=43.70  Aligned_cols=75  Identities=15%  Similarity=0.090  Sum_probs=56.8

Q ss_pred             CCCCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCCcEEEEeCCCC-------CceeEEE---ecCCCeEEE-EeC
Q psy959           19 AIPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLS-------QPSGLAI---DFDDEMLYW-TDA   87 (109)
Q Consensus        19 ~l~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~~~~l~~~~~~-------~p~glai---D~~~~~lYw-~D~   87 (109)
                      .-.-|.+++-|...+.+|+++..    .++|.+.+.++.....+.-..+.       +|.||.+   |+. ++|+. ++.
T Consensus        11 ~~~yPE~~~wd~~~g~~~vs~l~----~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~-grL~vv~~~   85 (334)
T 2p9w_A           11 KNLTPEDTIYDRTRQVFYQSNLY----KGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNS-KRLFAVMKN   85 (334)
T ss_dssp             TTCCCSCEEEETTTTEEEEEETT----TTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSC-CEEEEEEEE
T ss_pred             cccCCcCccCcCCCCEEEEEecc----CCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCC-CcEEEEEcc
Confidence            34679999999999999999987    69999999986554444323322       6789999   777 78877 552


Q ss_pred             ------------CCCeEEEEeCC
Q psy959           88 ------------VREKIERSDLA   98 (109)
Q Consensus        88 ------------~~~~I~~~~~d   98 (109)
                                  +...+.+.+++
T Consensus        86 ~~af~~~g~~~~g~~~v~~~Dl~  108 (334)
T 2p9w_A           86 AKSFNFADQSSHGASSFHSFNLP  108 (334)
T ss_dssp             TTTTCTTSCCSSSCCEEEEEESS
T ss_pred             cccccccccccCCCCEEEEEcCC
Confidence                        24678888988

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=97.22  E-value=0.023  Score=39.40  Aligned_cols=80  Identities=14%  Similarity=0.099  Sum_probs=60.0

Q ss_pred             cCCCCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCCcEEEEeCCCCCceeEEEecCCCeEEEEeCCCCeEEEEeC
Q psy959           18 QAIPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIERSDL   97 (109)
Q Consensus        18 ~~l~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glaiD~~~~~lYw~D~~~~~I~~~~~   97 (109)
                      ..-..|.++++.|...+||++...    ...|...++........+.. -..|.++++++..++||.+....+.|...++
T Consensus        29 ~~~~~~~~~~~s~dg~~l~~~~~~----d~~i~v~d~~~~~~~~~~~~-~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~  103 (391)
T 1l0q_A           29 PVGSNPMGAVISPDGTKVYVANAH----SNDVSIIDTATNNVIATVPA-GSSPQGVAVSPDGKQVYVTNMASSTLSVIDT  103 (391)
T ss_dssp             ECSSSEEEEEECTTSSEEEEEEGG----GTEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEET
T ss_pred             ecCCCcceEEECCCCCEEEEECCC----CCeEEEEECCCCeEEEEEEC-CCCccceEECCCCCEEEEEECCCCEEEEEEC
Confidence            344568999999977789999866    58899988854333222322 2389999999999999999888788988888


Q ss_pred             CCCCe
Q psy959           98 AGNNR  102 (109)
Q Consensus        98 dG~~~  102 (109)
                      .....
T Consensus       104 ~~~~~  108 (391)
T 1l0q_A          104 TSNTV  108 (391)
T ss_dssp             TTTEE
T ss_pred             CCCeE
Confidence            75543

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=97.21  E-value=0.0079  Score=41.57  Aligned_cols=73  Identities=14%  Similarity=0.056  Sum_probs=54.6

Q ss_pred             CCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcC-CCCcEEEEeCCCCCceeEEEecCCCeEEEEeCCCCeEEEEeCC
Q psy959           21 PGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMA-GSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIERSDLA   98 (109)
Q Consensus        21 ~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~d-G~~~~~l~~~~~~~p~glaiD~~~~~lYw~D~~~~~I~~~~~d   98 (109)
                      ..|.|+++++. |.||.+....  ..+.|.+.++. |.-...+.......+.|++++  .++||.+.+..+.+...+.+
T Consensus        21 ~f~~Gl~~~~d-g~Lyvstg~~--~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~   94 (266)
T 2iwa_A           21 AFTQGLVYAEN-DTLFESTGLY--GRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRR   94 (266)
T ss_dssp             CCEEEEEECST-TEEEEEECST--TTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETT
T ss_pred             CCcccEEEeCC-CeEEEECCCC--CCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECC
Confidence            35789999984 8999997531  15899999986 555555443344466778887  78999999998899888875

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=97.18  E-value=0.013  Score=40.53  Aligned_cols=76  Identities=13%  Similarity=0.180  Sum_probs=56.2

Q ss_pred             CCCCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCCcEEEEe-----CCCCCceeEEEecCCCeEEEEeCC-CCeE
Q psy959           19 AIPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIE-----KDLSQPSGLAIDFDDEMLYWTDAV-REKI   92 (109)
Q Consensus        19 ~l~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~~~~l~~-----~~~~~p~glaiD~~~~~lYw~D~~-~~~I   92 (109)
                      .-..|++++++|...++|.++..    ...|...+++....+.+..     .....|.++++++..++||.++.. ...|
T Consensus       209 ~~~~~~~~~~spdg~~l~v~~~~----~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i  284 (361)
T 3scy_A          209 PGSGPRHLIFNSDGKFAYLINEI----GGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGV  284 (361)
T ss_dssp             TTCCEEEEEECTTSSEEEEEETT----TCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEE
T ss_pred             CCCCCeEEEEcCCCCEEEEEcCC----CCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEE
Confidence            34678999999976789999865    5788888886332222221     123567899999999999999988 7888


Q ss_pred             EEEeCC
Q psy959           93 ERSDLA   98 (109)
Q Consensus        93 ~~~~~d   98 (109)
                      ...+++
T Consensus       285 ~v~~~~  290 (361)
T 3scy_A          285 AIFKVD  290 (361)
T ss_dssp             EEEEEC
T ss_pred             EEEEEc
Confidence            887775

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.16  E-value=0.01  Score=42.76  Aligned_cols=77  Identities=17%  Similarity=0.179  Sum_probs=56.9

Q ss_pred             CCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCC--C-cEEEEe---CCCC-CceeEEEecCC---CeEEEEeCCCC
Q psy959           21 PGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGS--L-KKVIIE---KDLS-QPSGLAIDFDD---EMLYWTDAVRE   90 (109)
Q Consensus        21 ~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~--~-~~~l~~---~~~~-~p~glaiD~~~---~~lYw~D~~~~   90 (109)
                      ..|.++++|+.+|.||..+..     ..|.+.+.+..  . ++.+..   ..+. .|.||+|.+..   ++||.++.+..
T Consensus       180 sq~EgcvvDd~~g~Lyv~eEd-----~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~  254 (355)
T 3amr_A          180 SQTEGMAADDEYGRLYIAEED-----EAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNS  254 (355)
T ss_dssp             SCEEEEEEETTTTEEEEEETT-----TEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGT
T ss_pred             CCcceEEEcCCCCeEEEeccc-----ceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCC
Confidence            578999999999999999975     45999996532  2 344432   2333 79999997554   57999998888


Q ss_pred             eEEEEeCCCCCe
Q psy959           91 KIERSDLAGNNR  102 (109)
Q Consensus        91 ~I~~~~~dG~~~  102 (109)
                      ..-..+..++++
T Consensus       255 s~~Vydr~~~~~  266 (355)
T 3amr_A          255 SYAIYDRQGKNK  266 (355)
T ss_dssp             EEEEEESSTTCC
T ss_pred             EEEEEECCCCCc
Confidence            888877776543

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=97.12  E-value=0.015  Score=42.25  Aligned_cols=84  Identities=15%  Similarity=0.232  Sum_probs=62.6

Q ss_pred             CCcceEEeeCC----CCeEEEEecCCCCCCCeEEEEE---c-CCC---CcEEEEeCC-CCCceeEEEecCCCeEEEEeCC
Q psy959           21 PGRRHFMPPIR----LRTLYYTDWGRFGTAGKILRTT---M-AGS---LKKVIIEKD-LSQPSGLAIDFDDEMLYWTDAV   88 (109)
Q Consensus        21 ~~p~~iavd~~----~g~lywsd~~~~~~~~~I~~~~---~-dG~---~~~~l~~~~-~~~p~glaiD~~~~~lYw~D~~   88 (109)
                      ....|||+.|.    .+.|||+...    ..+.++..   + +++   ..+.+-... ..+..++++|..++.||+++..
T Consensus       220 ~Gi~gIaLsp~~~~~~~~LYf~pls----s~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~  295 (381)
T 3q6k_A          220 AGIFGITLGDRDSEGNRPAYYLAGS----AIKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYDPKTKVIFFAEAN  295 (381)
T ss_dssp             CCEEEEEECCCCTTSCCEEEEEESS----CSEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEECTTTCEEEEEESS
T ss_pred             cCceEEEecCCcCCCCeEEEEEECC----CCcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEeCCCCeEEEEecc
Confidence            46678999987    7899999987    46788886   2 332   234444432 3455678999889999999999


Q ss_pred             CCeEEEEeCCC-----CCeEEEEeC
Q psy959           89 REKIERSDLAG-----NNREALYLN  108 (109)
Q Consensus        89 ~~~I~~~~~dG-----~~~~~l~~~  108 (109)
                      ...|.+.+-++     .+..+++.+
T Consensus       296 ~~aI~~w~~~~~~~~~~n~~~l~~d  320 (381)
T 3q6k_A          296 TKQVSCWNTQKMPLRMKNTDVVYTS  320 (381)
T ss_dssp             SSEEEEEETTSCSBCGGGEEEEEEC
T ss_pred             CCeEEEEeCCCCccccCceEEEEEC
Confidence            99999999988     456776654

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=97.08  E-value=0.0051  Score=42.53  Aligned_cols=73  Identities=16%  Similarity=0.186  Sum_probs=55.4

Q ss_pred             CcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcC-CCCcEEEEeCC------------CCCceeEEEecCCCeEEEEeCC
Q psy959           22 GRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMA-GSLKKVIIEKD------------LSQPSGLAIDFDDEMLYWTDAV   88 (109)
Q Consensus        22 ~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~d-G~~~~~l~~~~------------~~~p~glaiD~~~~~lYw~D~~   88 (109)
                      .|+.+...  .|.+|.+.+.    ...|.+.+.. |.-...|-...            ...|+|||+|+.++++|.+...
T Consensus       153 ~~nele~~--dg~lyvn~~~----~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~  226 (266)
T 2iwa_A          153 RLNELEYI--NGEVWANIWQ----TDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKL  226 (266)
T ss_dssp             CEEEEEEE--TTEEEEEETT----SSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETT
T ss_pred             cceeEEEE--CCEEEEecCC----CCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCC
Confidence            46666655  6899988876    5899999995 55555553221            2578999999999999999999


Q ss_pred             CCeEEEEeCCCC
Q psy959           89 REKIERSDLAGN  100 (109)
Q Consensus        89 ~~~I~~~~~dG~  100 (109)
                      ..++..+++...
T Consensus       227 ~~~v~~i~l~~~  238 (266)
T 2iwa_A          227 WPKLFEIKLHLV  238 (266)
T ss_dssp             CSEEEEEEEEEC
T ss_pred             CCeEEEEEEecc
Confidence            888888876543

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=97.05  E-value=0.019  Score=38.73  Aligned_cols=78  Identities=13%  Similarity=0.188  Sum_probs=58.5

Q ss_pred             cCCCCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCC--CCcE----EEEeCCCCCceeEEEecCCCeEEEEeCCCCe
Q psy959           18 QAIPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAG--SLKK----VIIEKDLSQPSGLAIDFDDEMLYWTDAVREK   91 (109)
Q Consensus        18 ~~l~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG--~~~~----~l~~~~~~~p~glaiD~~~~~lYw~D~~~~~   91 (109)
                      .....|.+++++|...+||.++..    ...|...+++.  ....    .+.......|.++++++..+.||.++.....
T Consensus       126 ~~~~~~~~~~~s~dg~~l~~~~~~----~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~  201 (343)
T 1ri6_A          126 EGLDGCHSANISPDNRTLWVPALK----QDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSS  201 (343)
T ss_dssp             CCCTTBCCCEECTTSSEEEEEEGG----GTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTE
T ss_pred             cCCCCceEEEECCCCCEEEEecCC----CCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCE
Confidence            345678999999977789999855    57888888864  2222    1222234579999999999999999988888


Q ss_pred             EEEEeCCC
Q psy959           92 IERSDLAG   99 (109)
Q Consensus        92 I~~~~~dG   99 (109)
                      |...+++.
T Consensus       202 i~~~~~~~  209 (343)
T 1ri6_A          202 VDVWELKD  209 (343)
T ss_dssp             EEEEESSC
T ss_pred             EEEEEecC
Confidence            98888864

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=96.97  E-value=0.0076  Score=44.85  Aligned_cols=62  Identities=21%  Similarity=0.293  Sum_probs=47.9

Q ss_pred             CCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcC-CCCcEEEEeCCCC----------------CceeEEEecCCCeEE
Q psy959           21 PGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMA-GSLKKVIIEKDLS----------------QPSGLAIDFDDEMLY   83 (109)
Q Consensus        21 ~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~d-G~~~~~l~~~~~~----------------~p~glaiD~~~~~lY   83 (109)
                      ..|.+|++.+..++||.++++    ...|.+.+.+ ....+.+-.....                .|+++++++..++||
T Consensus       321 ~~pa~I~lS~DGrfLYVSnrg----~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~Ly  396 (462)
T 2ece_A          321 PLVTDIDISLDDKFLYLSLWG----IGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVY  396 (462)
T ss_dssp             CCCCCEEECTTSCEEEEEETT----TTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEE
T ss_pred             CceeEEEECCCCCEEEEEeCC----CCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEE
Confidence            458899999999999999998    5889998874 4333333221111                599999999999999


Q ss_pred             EEe
Q psy959           84 WTD   86 (109)
Q Consensus        84 w~D   86 (109)
                      ++.
T Consensus       397 VaN  399 (462)
T 2ece_A          397 VTN  399 (462)
T ss_dssp             EEC
T ss_pred             EEc
Confidence            999

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=96.90  E-value=0.0057  Score=42.32  Aligned_cols=66  Identities=20%  Similarity=0.281  Sum_probs=50.1

Q ss_pred             eCCCCeEEEEecCCCCCCCeEEEEEcC-CCCcEEEEeCC-----------CCCceeEEEecCCCeEEEEeCCCCeEEEEe
Q psy959           29 PIRLRTLYYTDWGRFGTAGKILRTTMA-GSLKKVIIEKD-----------LSQPSGLAIDFDDEMLYWTDAVREKIERSD   96 (109)
Q Consensus        29 d~~~g~lywsd~~~~~~~~~I~~~~~d-G~~~~~l~~~~-----------~~~p~glaiD~~~~~lYw~D~~~~~I~~~~   96 (109)
                      ++..|.||...+.    ...|.+.+.. |.-...|-...           ...|+|||.|+.+++||.+-..-.++..+.
T Consensus       178 e~~~G~lyan~w~----~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~Wp~~~ev~  253 (262)
T 3nol_A          178 EWVDGEIFANVWQ----TNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLWPKVFEIT  253 (262)
T ss_dssp             EEETTEEEEEETT----SSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETTCSEEEEEE
T ss_pred             EEECCEEEEEEcc----CCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCCCCceEEEE
Confidence            3448899988887    5799998884 55555554322           247899999999999999999888887776


Q ss_pred             CC
Q psy959           97 LA   98 (109)
Q Consensus        97 ~d   98 (109)
                      +.
T Consensus       254 ~~  255 (262)
T 3nol_A          254 LT  255 (262)
T ss_dssp             EE
T ss_pred             Ee
Confidence            53

>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*

Probab=96.87  E-value=0.0043  Score=47.43  Aligned_cols=68  Identities=13%  Similarity=0.123  Sum_probs=50.2

Q ss_pred             CCCCcceEEeeCCCCeEEE-EecCCC-------CCCCeEEEEEcC-CCCcEEEEeCCCCCceeEEEecCCCeEEEEeC
Q psy959           19 AIPGRRHFMPPIRLRTLYY-TDWGRF-------GTAGKILRTTMA-GSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDA   87 (109)
Q Consensus        19 ~l~~p~~iavd~~~g~lyw-sd~~~~-------~~~~~I~~~~~d-G~~~~~l~~~~~~~p~glaiD~~~~~lYw~D~   87 (109)
                      .|+.|..|++|+ .|.||+ +|....       -.+..+++...+ |.-++.+.......|+|+++.|..+.||.+-.
T Consensus       474 ~fnsPDnL~fd~-~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~vQ  550 (592)
T 4a9v_A          474 MFNSPDGLGFDK-AGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGIQ  550 (592)
T ss_dssp             CCCCEEEEEECT-TCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEEE
T ss_pred             ccCCCCceEECC-CCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEEe
Confidence            478999999999 799999 886421       013478888875 44444433234578999999999999999864

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=96.77  E-value=0.013  Score=40.05  Aligned_cols=68  Identities=19%  Similarity=0.151  Sum_probs=51.8

Q ss_pred             eeCCCCeEEEEecCCCCCCCeEEEEEcC-CCCcEEEEeC------------CCCCceeEEEecCCCeEEEEeCCCCeEEE
Q psy959           28 PPIRLRTLYYTDWGRFGTAGKILRTTMA-GSLKKVIIEK------------DLSQPSGLAIDFDDEMLYWTDAVREKIER   94 (109)
Q Consensus        28 vd~~~g~lywsd~~~~~~~~~I~~~~~d-G~~~~~l~~~------------~~~~p~glaiD~~~~~lYw~D~~~~~I~~   94 (109)
                      +++..|.||-..+.    ...|.+.+.. |.-...|-..            ...-|+|||.|+.+++||.+-..-.++..
T Consensus       155 Le~~~G~lyanvw~----s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~wp~~~~  230 (243)
T 3mbr_X          155 LEWVNGELLANVWL----TSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKRWPMLYE  230 (243)
T ss_dssp             EEEETTEEEEEETT----TTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETTCSEEEE
T ss_pred             eEEeCCEEEEEECC----CCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCCCCcEEE
Confidence            34458999988876    5789998884 5555555422            22478999999999999999999888888


Q ss_pred             EeCCC
Q psy959           95 SDLAG   99 (109)
Q Consensus        95 ~~~dG   99 (109)
                      +.+..
T Consensus       231 v~~~~  235 (243)
T 3mbr_X          231 IRLTP  235 (243)
T ss_dssp             EEECC
T ss_pred             EEEec
Confidence            87754

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=96.72  E-value=0.014  Score=42.44  Aligned_cols=62  Identities=5%  Similarity=0.082  Sum_probs=48.9

Q ss_pred             ceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCC-----CCcEEEEe-CCCCCceeEEEecCCCeEEEEeCCCC
Q psy959           24 RHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAG-----SLKKVIIE-KDLSQPSGLAIDFDDEMLYWTDAVRE   90 (109)
Q Consensus        24 ~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG-----~~~~~l~~-~~~~~p~glaiD~~~~~lYw~D~~~~   90 (109)
                      .++++|+.+|.||+++..    ...|.+.+.++     .+..++.. ..+.+|.++++|. .+.||......+
T Consensus       278 ~~~~~D~~~G~ly~~~~~----~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~-~g~Lwv~sn~l~  345 (381)
T 3q6k_A          278 IALAYDPKTKVIFFAEAN----TKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDS-KGGLWFMSNGFP  345 (381)
T ss_dssp             EEEEECTTTCEEEEEESS----SSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECT-TSCEEEEECSCC
T ss_pred             ceEEEeCCCCeEEEEecc----CCeEEEEeCCCCccccCceEEEEECCCccccCeEEECC-CCeEEEEECcch
Confidence            367898779999999998    68999999988     34466655 4588999999995 567888876543

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=96.69  E-value=0.02  Score=42.00  Aligned_cols=78  Identities=12%  Similarity=-0.173  Sum_probs=54.1

Q ss_pred             CCcceEEeeCCCCeEEEEecCCC----C-CCCeEEEEEcC-CCCcEEEEeC------CCCCceeEEEecCCCeEEEEeCC
Q psy959           21 PGRRHFMPPIRLRTLYYTDWGRF----G-TAGKILRTTMA-GSLKKVIIEK------DLSQPSGLAIDFDDEMLYWTDAV   88 (109)
Q Consensus        21 ~~p~~iavd~~~g~lywsd~~~~----~-~~~~I~~~~~d-G~~~~~l~~~------~~~~p~glaiD~~~~~lYw~D~~   88 (109)
                      ..| +++++|..+++|.++....    + ....|.+.+.. ++....|...      ....|.++++++..++||.+...
T Consensus       119 ~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~  197 (426)
T 3c75_H          119 FLP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFS  197 (426)
T ss_dssp             SSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECS
T ss_pred             CCC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecC
Confidence            468 9999999999999985200    0 03567777664 3333444322      13579999999999999999875


Q ss_pred             -CCeEEEEeCCC
Q psy959           89 -REKIERSDLAG   99 (109)
Q Consensus        89 -~~~I~~~~~dG   99 (109)
                       ...|...+..-
T Consensus       198 ~~~~VsVID~~t  209 (426)
T 3c75_H          198 PAPAVGVVDLEG  209 (426)
T ss_dssp             SSCEEEEEETTT
T ss_pred             CCCeEEEEECCC
Confidence             56777777654

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=96.66  E-value=0.072  Score=35.72  Aligned_cols=76  Identities=13%  Similarity=-0.021  Sum_probs=55.1

Q ss_pred             CcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCC-cEEEEeCCC----CCceeEEEecCCCeEEEEeC---------
Q psy959           22 GRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSL-KKVIIEKDL----SQPSGLAIDFDDEMLYWTDA---------   87 (109)
Q Consensus        22 ~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~-~~~l~~~~~----~~p~glaiD~~~~~lYw~D~---------   87 (109)
                      .|.+++++|..+.+|.++..    ...|...++.... ...+.....    ..|.++++++..++||.++.         
T Consensus        35 ~~~~~~~s~dg~~l~v~~~~----~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~  110 (337)
T 1pby_B           35 TPMVPMVAPGGRIAYATVNK----SESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHF  110 (337)
T ss_dssp             CCCCEEECTTSSEEEEEETT----TTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCE
T ss_pred             CccceEEcCCCCEEEEEeCC----CCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccc
Confidence            59999999976789999875    5789999986433 333322111    16899999999999999962         


Q ss_pred             --CCCeEEEEeCCCCC
Q psy959           88 --VREKIERSDLAGNN  101 (109)
Q Consensus        88 --~~~~I~~~~~dG~~  101 (109)
                        ....|...+.++..
T Consensus       111 ~~~~~~i~v~d~~~~~  126 (337)
T 1pby_B          111 EVQPTRVALYDAETLS  126 (337)
T ss_dssp             EECCCEEEEEETTTTE
T ss_pred             cccCceEEEEECCCCc
Confidence              24678888876543

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=96.65  E-value=0.062  Score=36.32  Aligned_cols=74  Identities=19%  Similarity=0.092  Sum_probs=53.8

Q ss_pred             CcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCCcEEEEeCC------CCCceeEEEecCCCeEEEEeCC-------
Q psy959           22 GRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKD------LSQPSGLAIDFDDEMLYWTDAV-------   88 (109)
Q Consensus        22 ~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~~~~l~~~~------~~~p~glaiD~~~~~lYw~D~~-------   88 (109)
                      .|.++++.|..+.+|.+...    ...|...+++.......+...      ...|.++++++.+++||.+...       
T Consensus        44 ~~~~~~~s~dg~~~~v~~~~----~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~  119 (349)
T 1jmx_B           44 GPGTAMMAPDNRTAYVLNNH----YGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDH  119 (349)
T ss_dssp             SSCEEEECTTSSEEEEEETT----TTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSC
T ss_pred             CCceeEECCCCCEEEEEeCC----CCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccc
Confidence            68999999966679988865    588999988644333223211      2238999999999999999843       


Q ss_pred             ----CCeEEEEeCCC
Q psy959           89 ----REKIERSDLAG   99 (109)
Q Consensus        89 ----~~~I~~~~~dG   99 (109)
                          ...|...++..
T Consensus       120 ~~~~~~~i~~~d~~~  134 (349)
T 1jmx_B          120 YVVKPPRLEVFSTAD  134 (349)
T ss_dssp             EEECCCEEEEEEGGG
T ss_pred             cccCCCeEEEEECCC
Confidence                46787777654

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=96.64  E-value=0.0091  Score=41.46  Aligned_cols=65  Identities=17%  Similarity=0.266  Sum_probs=49.9

Q ss_pred             eCCCCeEEEEecCCCCCCCeEEEEEcC-CCCcEEEEeC------------CCCCceeEEEecCCCeEEEEeCCCCeEEEE
Q psy959           29 PIRLRTLYYTDWGRFGTAGKILRTTMA-GSLKKVIIEK------------DLSQPSGLAIDFDDEMLYWTDAVREKIERS   95 (109)
Q Consensus        29 d~~~g~lywsd~~~~~~~~~I~~~~~d-G~~~~~l~~~------------~~~~p~glaiD~~~~~lYw~D~~~~~I~~~   95 (109)
                      ++..|.||...+.    ...|.+.+.. |.-...|-..            ....|+|||.|+.+++||.+-..-.+++.+
T Consensus       187 e~~dG~lyanvw~----s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~Wp~~~ev  262 (268)
T 3nok_A          187 ECANGVIYANIWH----SSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKLWPRLFEV  262 (268)
T ss_dssp             EEETTEEEEEETT----CSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETTCSEEEEE
T ss_pred             EEeCCEEEEEECC----CCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCCCCceEEE
Confidence            4458999988877    5799999884 5545555432            124789999999999999999988888877


Q ss_pred             eC
Q psy959           96 DL   97 (109)
Q Consensus        96 ~~   97 (109)
                      .+
T Consensus       263 ~~  264 (268)
T 3nok_A          263 RL  264 (268)
T ss_dssp             EE
T ss_pred             EE
Confidence            65

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=96.63  E-value=0.053  Score=39.05  Aligned_cols=74  Identities=20%  Similarity=0.156  Sum_probs=51.2

Q ss_pred             CCCCcceEEe--eCCCCe--EEEEecCCCCCCCeEEEEEc----CCCCcEEEEe--CCCCCceeEEEecCCCeEEEEeCC
Q psy959           19 AIPGRRHFMP--PIRLRT--LYYTDWGRFGTAGKILRTTM----AGSLKKVIIE--KDLSQPSGLAIDFDDEMLYWTDAV   88 (109)
Q Consensus        19 ~l~~p~~iav--d~~~g~--lywsd~~~~~~~~~I~~~~~----dG~~~~~l~~--~~~~~p~glaiD~~~~~lYw~D~~   88 (109)
                      .+..|.|+++  ++.++.  +|.++.     .+++....+    +|.....++.  .--.+|.|+++|+..++||.++..
T Consensus       126 ~~~~pyGlcly~~~~~g~~yafV~~k-----~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~Lyv~eEd  200 (355)
T 3amr_A          126 AINEVYGFTLYHSQKTGKYYAMVTGK-----EGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGRLYIAEED  200 (355)
T ss_dssp             CCSSCCCEEEEECTTTCCEEEEEECS-----SSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTEEEEEETT
T ss_pred             CCCCeeEEEEEecCCCCcEEEEEECC-----CCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCeEEEeccc
Confidence            3478899999  887774  666654     356666444    2322222222  123589999999999999999998


Q ss_pred             CCeEEEEeCC
Q psy959           89 REKIERSDLA   98 (109)
Q Consensus        89 ~~~I~~~~~d   98 (109)
                      .+ |.+.+.+
T Consensus       201 ~G-Iw~~da~  209 (355)
T 3amr_A          201 EA-IWKFSAE  209 (355)
T ss_dssp             TE-EEEEECS
T ss_pred             ce-EEEEeCC
Confidence            55 9999855

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=96.60  E-value=0.094  Score=36.26  Aligned_cols=77  Identities=16%  Similarity=0.096  Sum_probs=58.5

Q ss_pred             CCCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCCcEEEEeCCCCCceeEEEecCCCeEEEEeCCCCeEEEEeCCC
Q psy959           20 IPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIERSDLAG   99 (109)
Q Consensus        20 l~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glaiD~~~~~lYw~D~~~~~I~~~~~dG   99 (109)
                      -..|.++++.|....||++...    ...|...++........+.. -..|.++++++..+.||.+....+.|...++..
T Consensus       115 ~~~~~~~~~s~dg~~l~~~~~~----~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~  189 (391)
T 1l0q_A          115 GKSPLGLALSPDGKKLYVTNNG----DKTVSVINTVTKAVINTVSV-GRSPKGIAVTPDGTKVYVANFDSMSISVIDTVT  189 (391)
T ss_dssp             SSSEEEEEECTTSSEEEEEETT----TTEEEEEETTTTEEEEEEEC-CSSEEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred             CCCcceEEECCCCCEEEEEeCC----CCEEEEEECCCCcEEEEEec-CCCcceEEECCCCCEEEEEeCCCCEEEEEECCC
Confidence            3568899999977789888876    58999998864443333332 357899999999999999988778888888765


Q ss_pred             CC
Q psy959          100 NN  101 (109)
Q Consensus       100 ~~  101 (109)
                      ..
T Consensus       190 ~~  191 (391)
T 1l0q_A          190 NS  191 (391)
T ss_dssp             TE
T ss_pred             Ce
Confidence            43

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=96.59  E-value=0.021  Score=39.89  Aligned_cols=79  Identities=16%  Similarity=0.105  Sum_probs=55.2

Q ss_pred             CcceEE-eeCCCCeEEEEecCCC-CCCCeEEEEEcC--CCCcEE--EEeCCCCCceeEEEec---CCCeEEEEeCCCCeE
Q psy959           22 GRRHFM-PPIRLRTLYYTDWGRF-GTAGKILRTTMA--GSLKKV--IIEKDLSQPSGLAIDF---DDEMLYWTDAVREKI   92 (109)
Q Consensus        22 ~p~~ia-vd~~~g~lywsd~~~~-~~~~~I~~~~~d--G~~~~~--l~~~~~~~p~glaiD~---~~~~lYw~D~~~~~I   92 (109)
                      .|.+++ ++|..++||.++.... .....|...+++  |.....  +.......|.+++++|   ..++||.+....+.|
T Consensus       255 ~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v  334 (365)
T 1jof_A          255 YRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWL  334 (365)
T ss_dssp             EEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEE
T ss_pred             ccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeE
Confidence            478899 9997778998886520 001278888775  433222  2222345799999999   688999998877888


Q ss_pred             EEEeCCCC
Q psy959           93 ERSDLAGN  100 (109)
Q Consensus        93 ~~~~~dG~  100 (109)
                      ...+.++.
T Consensus       335 ~v~~~~~~  342 (365)
T 1jof_A          335 EIYRWKDE  342 (365)
T ss_dssp             EEEEEETT
T ss_pred             EEEEEchh
Confidence            88888776

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=96.59  E-value=0.0096  Score=44.14  Aligned_cols=82  Identities=11%  Similarity=0.076  Sum_probs=55.9

Q ss_pred             cEEEecCCCCcceEEeeCCC-CeEEEEecCCCCCCCeEEEEEcCCCC-cEEEEe------CC-----CCCceeEEEecC-
Q psy959           13 RSLLLQAIPGRRHFMPPIRL-RTLYYTDWGRFGTAGKILRTTMAGSL-KKVIIE------KD-----LSQPSGLAIDFD-   78 (109)
Q Consensus        13 ~~~li~~l~~p~~iavd~~~-g~lywsd~~~~~~~~~I~~~~~dG~~-~~~l~~------~~-----~~~p~glaiD~~-   78 (109)
                      .+++.++|..|.+|++.|.. ++||+++..     .+|.+...+|.. ...+..      ..     ..-+.|||++|. 
T Consensus         6 v~~va~gL~~P~~~a~~pdG~~rl~V~er~-----G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f   80 (463)
T 2wg3_C            6 IQEVVSGLRQPVGALHSGDGSQRLFILEKE-----GYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNY   80 (463)
T ss_dssp             EEEEEEEESSEEEEECCSSSSCCEEEEETT-----TEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTH
T ss_pred             EEEeccCCCCceEEEECCCCCeEEEEEeCC-----ceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCC
Confidence            35556899999999999943 269999864     789988777753 222221      11     234678999986 


Q ss_pred             --CCeEEEEeCC------------CCeEEEEeCCC
Q psy959           79 --DEMLYWTDAV------------REKIERSDLAG   99 (109)
Q Consensus        79 --~~~lYw~D~~------------~~~I~~~~~dG   99 (109)
                        ++.||++-..            ..+|.+..++.
T Consensus        81 ~~n~~lYv~yt~~~~~~~~~~~~~~~~v~r~~~~~  115 (463)
T 2wg3_C           81 KKNGKLYVSYTTNQERWAIGPHDHILRVVEYTVSR  115 (463)
T ss_dssp             HHHCEEEEEEEECCCSSCSSSSCEEEEEEEEEBCT
T ss_pred             cCCCEEEEEEeCCCCCcccCCcccceEEEEEEEcC
Confidence              7788887542            13788888763

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=96.46  E-value=0.042  Score=37.19  Aligned_cols=73  Identities=12%  Similarity=-0.018  Sum_probs=53.2

Q ss_pred             ceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCC-cEEEEeCCCCCceeEEEecCCCeEEEEeCCCCeEEEEeCCCCC
Q psy959           24 RHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSL-KKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIERSDLAGNN  101 (109)
Q Consensus        24 ~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~-~~~l~~~~~~~p~glaiD~~~~~lYw~D~~~~~I~~~~~dG~~  101 (109)
                      .|+++.+ .+.+|.+...    ...|.+.+.+... ...+-......|.++++++..+.+|.+....+.|...+++...
T Consensus         3 ~g~~~~~-~~~~~v~~~~----~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~   76 (349)
T 1jmx_B            3 TGPALKA-GHEYMIVTNY----PNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCK   76 (349)
T ss_dssp             -CCCCCT-TCEEEEEEET----TTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred             ccccccC-CCEEEEEeCC----CCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCc
Confidence            4666666 7889998877    6899999886433 3333222223699999999988999999888899999887543

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=96.39  E-value=0.12  Score=36.32  Aligned_cols=81  Identities=20%  Similarity=0.192  Sum_probs=57.1

Q ss_pred             cCCCCcceEEeeCCCCeEEEEecCCCC----------CCCeEEEEEcCCCCcEEEEeCCCCCceeEEEecCCCeEEEEeC
Q psy959           18 QAIPGRRHFMPPIRLRTLYYTDWGRFG----------TAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDA   87 (109)
Q Consensus        18 ~~l~~p~~iavd~~~g~lywsd~~~~~----------~~~~I~~~~~dG~~~~~l~~~~~~~p~glaiD~~~~~lYw~D~   87 (109)
                      .....|.+++++|....||.+......          ..+.|...++........+.. ...|.++++++.++.||.+..
T Consensus       342 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~  420 (433)
T 3bws_A          342 PVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA-GNQPTGLDVSPDNRYLVISDF  420 (433)
T ss_dssp             ECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSCEEEEEET
T ss_pred             cCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC-CCCCceEEEcCCCCEEEEEEC
Confidence            334668899999977778888764210          014888888854333333332 457999999999999999988


Q ss_pred             CCCeEEEEeCCC
Q psy959           88 VREKIERSDLAG   99 (109)
Q Consensus        88 ~~~~I~~~~~dG   99 (109)
                      ..+.|...+++|
T Consensus       421 ~d~~i~v~~~~~  432 (433)
T 3bws_A          421 LDHQIRVYRRDG  432 (433)
T ss_dssp             TTTEEEEEEETT
T ss_pred             CCCeEEEEEecC
Confidence            778888877765

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=96.21  E-value=0.24  Score=37.48  Aligned_cols=72  Identities=13%  Similarity=-0.054  Sum_probs=52.0

Q ss_pred             CCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcC-CCCcEEEEeCCCCCceeEEEe----cCCCeEEEEeCCCCeEEEE
Q psy959           21 PGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMA-GSLKKVIIEKDLSQPSGLAID----FDDEMLYWTDAVREKIERS   95 (109)
Q Consensus        21 ~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~d-G~~~~~l~~~~~~~p~glaiD----~~~~~lYw~D~~~~~I~~~   95 (109)
                      ..|.++++.|..+++|.++.     ...|...++. .+...+---..-..|.+++++    +..+++|.+....+.|..+
T Consensus       197 ~~p~~v~~SpDGr~lyv~~~-----dg~V~viD~~~~t~~~v~~i~~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~Vi  271 (567)
T 1qks_A          197 YAVHISRLSASGRYLFVIGR-----DGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIM  271 (567)
T ss_dssp             SCEEEEEECTTSCEEEEEET-----TSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEE
T ss_pred             CCccceEECCCCCEEEEEcC-----CCeEEEEECCCCCCcEeEEEecCCCCceeEEccccCCCCCEEEEEEccCCeEEEE
Confidence            47889999998889998864     4689999984 333222111124579999999    5888999998877777666


Q ss_pred             eC
Q psy959           96 DL   97 (109)
Q Consensus        96 ~~   97 (109)
                      +.
T Consensus       272 D~  273 (567)
T 1qks_A          272 DG  273 (567)
T ss_dssp             ET
T ss_pred             EC
Confidence            53

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=96.16  E-value=0.019  Score=42.58  Aligned_cols=65  Identities=15%  Similarity=0.153  Sum_probs=48.9

Q ss_pred             CcceEEeeCCCCeEEEEecCC-------------CCCCCeEEEEEcCCCC-------------------cEEEEeCCCCC
Q psy959           22 GRRHFMPPIRLRTLYYTDWGR-------------FGTAGKILRTTMAGSL-------------------KKVIIEKDLSQ   69 (109)
Q Consensus        22 ~p~~iavd~~~g~lywsd~~~-------------~~~~~~I~~~~~dG~~-------------------~~~l~~~~~~~   69 (109)
                      ....|+++| .|+||++-...             ....++|.|.+.||+.                   +..|+..++.+
T Consensus       140 ~g~~l~fgp-DG~LYv~~Gd~~~~~~~~~~~q~~~~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~G~RN  218 (463)
T 2wg3_C          140 LGGQLLFGP-DGFLYIILGDGMITLDDMEEMDGLSDFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAHGLHD  218 (463)
T ss_dssp             CEEEEEECT-TSCEEEEECCTTCCHHHHHHCTTCCSCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEECCSS
T ss_pred             cCCcEeECC-CCcEEEEeCCCCCCCCccccccCcCCCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEECCCC
Confidence            345699999 89999994321             1125789999999951                   23467778999


Q ss_pred             ceeEEEecCCC------eEEEEeC
Q psy959           70 PSGLAIDFDDE------MLYWTDA   87 (109)
Q Consensus        70 p~glaiD~~~~------~lYw~D~   87 (109)
                      |.||++|+.++      ++|-+|.
T Consensus       219 p~gla~dp~tg~~~G~l~~~~~D~  242 (463)
T 2wg3_C          219 PGRCAVDRHPTDININLTILCSDS  242 (463)
T ss_dssp             CCBEEEESSCSSTTCSEEEEEECC
T ss_pred             cceEEECCCCCCcccceEEEeccc
Confidence            99999999854      6777885

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=95.80  E-value=0.074  Score=37.41  Aligned_cols=77  Identities=14%  Similarity=0.055  Sum_probs=52.7

Q ss_pred             CCcceEEeeCCCCeEEEEecCC----CC-CCCeEEEEEcCC-CCcEEEEeC-----CCCCceeEEEecCCCeEEEEeCC-
Q psy959           21 PGRRHFMPPIRLRTLYYTDWGR----FG-TAGKILRTTMAG-SLKKVIIEK-----DLSQPSGLAIDFDDEMLYWTDAV-   88 (109)
Q Consensus        21 ~~p~~iavd~~~g~lywsd~~~----~~-~~~~I~~~~~dG-~~~~~l~~~-----~~~~p~glaiD~~~~~lYw~D~~-   88 (109)
                      ..| +++++|..+++|.++...    ++ ....|...+... .....+-..     ....|.++++++..++||.+... 
T Consensus        51 ~~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~  129 (361)
T 2oiz_A           51 FNG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASP  129 (361)
T ss_dssp             EEE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESS
T ss_pred             CCC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCC
Confidence            467 999999888999997420    00 034688777652 333344321     13579999999999999999865 


Q ss_pred             CCeEEEEeCC
Q psy959           89 REKIERSDLA   98 (109)
Q Consensus        89 ~~~I~~~~~d   98 (109)
                      ...|...+.+
T Consensus       130 ~~~v~v~d~~  139 (361)
T 2oiz_A          130 ATSIGIVDVA  139 (361)
T ss_dssp             SEEEEEEETT
T ss_pred             CCeEEEEECC
Confidence            5677776655

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=95.77  E-value=0.32  Score=34.53  Aligned_cols=77  Identities=6%  Similarity=-0.255  Sum_probs=52.7

Q ss_pred             CCcceEEeeCCCCeEEEEecCC----CC-CCCeEEEEEcC-CCCcEEEEeC------CCCCceeEEEecCCCeEEEEeCC
Q psy959           21 PGRRHFMPPIRLRTLYYTDWGR----FG-TAGKILRTTMA-GSLKKVIIEK------DLSQPSGLAIDFDDEMLYWTDAV   88 (109)
Q Consensus        21 ~~p~~iavd~~~g~lywsd~~~----~~-~~~~I~~~~~d-G~~~~~l~~~------~~~~p~glaiD~~~~~lYw~D~~   88 (109)
                      ..| ++++.|..+++|.++...    ++ ....|.+.+.. ++....+-..      ....|.++++++..++||.+...
T Consensus        67 ~~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~  145 (373)
T 2mad_H           67 FLP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFA  145 (373)
T ss_pred             CCC-CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecC
Confidence            457 999999889999998421    00 13567777775 2222333211      02469999999999999999865


Q ss_pred             -CCeEEEEeCCC
Q psy959           89 -REKIERSDLAG   99 (109)
Q Consensus        89 -~~~I~~~~~dG   99 (109)
                       ...|...+ +.
T Consensus       146 ~~~~v~viD-~t  156 (373)
T 2mad_H          146 AGPAVGLVV-QG  156 (373)
T ss_pred             CCCeEEEEE-CC
Confidence             57788887 53

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=95.76  E-value=0.086  Score=37.85  Aligned_cols=73  Identities=4%  Similarity=-0.324  Sum_probs=51.2

Q ss_pred             CCcceEEeeCCCCeEEEEecCC----CC-CCCeEEEEEcC-CCCcEEEEeC------CCCCceeEEEecCCCeEEEEeCC
Q psy959           21 PGRRHFMPPIRLRTLYYTDWGR----FG-TAGKILRTTMA-GSLKKVIIEK------DLSQPSGLAIDFDDEMLYWTDAV   88 (109)
Q Consensus        21 ~~p~~iavd~~~g~lywsd~~~----~~-~~~~I~~~~~d-G~~~~~l~~~------~~~~p~glaiD~~~~~lYw~D~~   88 (109)
                      ..| ++++.|..+++|.++...    ++ ....|...++. ++....|-..      ....|.++++++..++||.+...
T Consensus        66 ~~P-~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~  144 (368)
T 1mda_H           66 FLS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFG  144 (368)
T ss_dssp             TTC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECS
T ss_pred             CCC-ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccC
Confidence            458 999999999999998420    00 13678888875 4444554322      13579999999999999999865


Q ss_pred             -CCeEEE
Q psy959           89 -REKIER   94 (109)
Q Consensus        89 -~~~I~~   94 (109)
                       ...+..
T Consensus       145 ~~~~v~V  151 (368)
T 1mda_H          145 SSAAAGL  151 (368)
T ss_dssp             SSCEEEE
T ss_pred             CCCeEEE
Confidence             444544

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=95.75  E-value=0.31  Score=34.12  Aligned_cols=75  Identities=19%  Similarity=0.213  Sum_probs=56.1

Q ss_pred             CCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCCcEEEEeCCCCCceeEEEecCCCeEEEEeCCC-----------
Q psy959           21 PGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVR-----------   89 (109)
Q Consensus        21 ~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glaiD~~~~~lYw~D~~~-----------   89 (109)
                      ..|.+++++|..+.+|.+...    ...|...+++.......+. ....|.++++++..+.||.+....           
T Consensus       303 ~~~~~~~~~~~g~~l~~~~~~----~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g  377 (433)
T 3bws_A          303 GNKRHIVSGNTENKIYVSDMC----CSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKG  377 (433)
T ss_dssp             ECEEEEEECSSTTEEEEEETT----TTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCC
T ss_pred             CCcceEEECCCCCEEEEEecC----CCEEEEEECCCCcEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCcccccccccc
Confidence            467889999966689999876    5899999987544333333 346789999999998999988753           


Q ss_pred             ---CeEEEEeCCCC
Q psy959           90 ---EKIERSDLAGN  100 (109)
Q Consensus        90 ---~~I~~~~~dG~  100 (109)
                         +.|...+....
T Consensus       378 ~~dg~v~~~d~~~~  391 (433)
T 3bws_A          378 LVLGKVYVIDTTTD  391 (433)
T ss_dssp             SSCCEEEEEETTTT
T ss_pred             ccceEEEEEECCCC
Confidence               37888877543

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=95.66  E-value=0.15  Score=36.38  Aligned_cols=80  Identities=8%  Similarity=0.021  Sum_probs=58.2

Q ss_pred             cceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCCcEEEEeCCCCCceeEEEecCCCeEEEEeCCC--CeEEEEeCCCC
Q psy959           23 RRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVR--EKIERSDLAGN  100 (109)
Q Consensus        23 p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glaiD~~~~~lYw~D~~~--~~I~~~~~dG~  100 (109)
                      ..++++.|...+|+++....  ....|...++++...+.+...  ..+..+++.+....|+++....  ..|...+++|.
T Consensus       313 ~~~~~~spdG~~l~~~~~~~--g~~~i~~~d~~~~~~~~l~~~--~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~  388 (415)
T 2hqs_A          313 NQDADVSSDGKFMVMVSSNG--GQQHIAKQDLATGGVQVLSST--FLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGR  388 (415)
T ss_dssp             EEEEEECTTSSEEEEEEECS--SCEEEEEEETTTCCEEECCCS--SSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSC
T ss_pred             ccCeEECCCCCEEEEEECcC--CceEEEEEECCCCCEEEecCC--CCcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCC
Confidence            45678888777888876531  136899999987665554332  3778899999999888876544  38999999998


Q ss_pred             CeEEEE
Q psy959          101 NREALY  106 (109)
Q Consensus       101 ~~~~l~  106 (109)
                      ..+.|.
T Consensus       389 ~~~~l~  394 (415)
T 2hqs_A          389 FKARLP  394 (415)
T ss_dssp             CEEECC
T ss_pred             cEEEee
Confidence            877664

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=95.53  E-value=0.3  Score=32.59  Aligned_cols=76  Identities=13%  Similarity=-0.040  Sum_probs=52.8

Q ss_pred             CcceEEeeCCCCeEEEEecCC----CC---CCCeEEEEEcCCCCcEEEEeCCCCCceeEEEecCCCeEEEEeCCCCeEEE
Q psy959           22 GRRHFMPPIRLRTLYYTDWGR----FG---TAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIER   94 (109)
Q Consensus        22 ~p~~iavd~~~g~lywsd~~~----~~---~~~~I~~~~~dG~~~~~l~~~~~~~p~glaiD~~~~~lYw~D~~~~~I~~   94 (109)
                      .|.+++++|..++||+++...    ..   ....|...++++......+.. -..|.++++++..++||.++   +.|..
T Consensus        83 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~---~~i~~  158 (337)
T 1pby_B           83 SLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGLG---RDLHV  158 (337)
T ss_dssp             CTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEES---SSEEE
T ss_pred             cccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEeC---CeEEE
Confidence            788999999777999986210    00   037899988865443333332 45789999999999999994   56777


Q ss_pred             EeCCCCC
Q psy959           95 SDLAGNN  101 (109)
Q Consensus        95 ~~~dG~~  101 (109)
                      .+.++..
T Consensus       159 ~d~~~~~  165 (337)
T 1pby_B          159 MDPEAGT  165 (337)
T ss_dssp             EETTTTE
T ss_pred             EECCCCc
Confidence            7776543

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=95.51  E-value=0.39  Score=33.67  Aligned_cols=70  Identities=11%  Similarity=0.031  Sum_probs=47.4

Q ss_pred             eEEeeCCCCeEEEEec-C-C----CCCCCeEEEEEcCCCC-cEEEEeCCCCCceeEEEecCCCeEEEEeCCCCeEEEEeC
Q psy959           25 HFMPPIRLRTLYYTDW-G-R----FGTAGKILRTTMAGSL-KKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIERSDL   97 (109)
Q Consensus        25 ~iavd~~~g~lywsd~-~-~----~~~~~~I~~~~~dG~~-~~~l~~~~~~~p~glaiD~~~~~lYw~D~~~~~I~~~~~   97 (109)
                      .+++++..+++|.+.. . .    +.....|.+.++.... ...+ ... . |.+|++++..++||-+..  +.|...+.
T Consensus       258 ~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i-~~~-~-p~~ia~spdg~~l~v~n~--~~v~v~D~  332 (361)
T 2oiz_A          258 LVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARI-PGR-D-ALSMTIDQQRNLMLTLDG--GNVNVYDI  332 (361)
T ss_dssp             CEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEE-ECT-T-CCEEEEETTTTEEEEECS--SCEEEEEC
T ss_pred             EEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEE-ecC-C-eeEEEECCCCCEEEEeCC--CeEEEEEC
Confidence            3899998899999864 1 0    0013478887775332 2333 222 2 999999999999998875  77777775


Q ss_pred             CC
Q psy959           98 AG   99 (109)
Q Consensus        98 dG   99 (109)
                      ..
T Consensus       333 ~t  334 (361)
T 2oiz_A          333 SQ  334 (361)
T ss_dssp             SS
T ss_pred             CC
Confidence            53

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=95.50  E-value=0.52  Score=35.11  Aligned_cols=69  Identities=9%  Similarity=-0.160  Sum_probs=50.6

Q ss_pred             CcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcC-CCC--cEEEEeCCCCCceeEEEec----CCCeEEEEeCCCCeEEE
Q psy959           22 GRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMA-GSL--KKVIIEKDLSQPSGLAIDF----DDEMLYWTDAVREKIER   94 (109)
Q Consensus        22 ~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~d-G~~--~~~l~~~~~~~p~glaiD~----~~~~lYw~D~~~~~I~~   94 (109)
                      .|.+++++|..++||.++..     ..|...+++ .+.  ...+-  .-..|.++++++    ..++||.+....+.|..
T Consensus       180 ~~~~v~~spdg~~l~v~~~d-----~~V~v~D~~~~t~~~~~~i~--~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v  252 (543)
T 1nir_A          180 AVHISRMSASGRYLLVIGRD-----ARIDMIDLWAKEPTKVAEIK--IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAI  252 (543)
T ss_dssp             TEEEEEECTTSCEEEEEETT-----SEEEEEETTSSSCEEEEEEE--CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEE
T ss_pred             ccceEEECCCCCEEEEECCC-----CeEEEEECcCCCCcEEEEEe--cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEE
Confidence            38899999988899988763     789999984 222  22222  345799999999    89999998865566655


Q ss_pred             EeC
Q psy959           95 SDL   97 (109)
Q Consensus        95 ~~~   97 (109)
                      .+.
T Consensus       253 ~D~  255 (543)
T 1nir_A          253 MDG  255 (543)
T ss_dssp             EET
T ss_pred             Eec
Confidence            554

>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*

Probab=95.50  E-value=0.3  Score=37.46  Aligned_cols=87  Identities=17%  Similarity=0.169  Sum_probs=58.2

Q ss_pred             CCCCcceEEeeCCCCeEEEEecCCC-----------------CCCCeEEEEEcCCCC-------cEEEEeC---------
Q psy959           19 AIPGRRHFMPPIRLRTLYYTDWGRF-----------------GTAGKILRTTMAGSL-------KKVIIEK---------   65 (109)
Q Consensus        19 ~l~~p~~iavd~~~g~lywsd~~~~-----------------~~~~~I~~~~~dG~~-------~~~l~~~---------   65 (109)
                      .+..|..++++|.+|.+|++=....                 ...+.|++...++..       -..++..         
T Consensus       382 ~mdRpEdi~v~p~~g~vY~alTnn~~rg~~~~~~~~~Npr~~n~~G~I~r~~e~~~d~~a~~f~W~i~l~~G~p~~~~~~  461 (592)
T 4a9v_A          382 RMDRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHAGT  461 (592)
T ss_dssp             CEECEEEEEECTTTCCEEEEECCBTTTTSTTSCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTSTTS
T ss_pred             cccCccceeEcCCCCEEEEEEeCCCCCCCcCccccCCCCccCCCCCeEEEEeeCCCCcccceeeEEEEEEccCCcccccc
Confidence            3578999999999999999854321                 024789999886532       1233321         


Q ss_pred             ------------CCCCceeEEEecCCCeEEE-EeCC-----------CCeEEEEeCCCCCeEEEE
Q psy959           66 ------------DLSQPSGLAIDFDDEMLYW-TDAV-----------REKIERSDLAGNNREALY  106 (109)
Q Consensus        66 ------------~~~~p~glaiD~~~~~lYw-~D~~-----------~~~I~~~~~dG~~~~~l~  106 (109)
                                  .+..|.+|++|+. +.||+ +|..           ...+.+.+-+....+.++
T Consensus       462 ~~~g~~~~~~~~~fnsPDnL~fd~~-G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl  525 (592)
T 4a9v_A          462 PKGGSSNITPQNMFNSPDGLGFDKA-GRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFM  525 (592)
T ss_dssp             GGGCCTTCCTTTCCCCEEEEEECTT-CCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEE
T ss_pred             cccCccCccccCccCCCCceEECCC-CCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEE
Confidence                        2678999999965 78888 8864           236777777533344333

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=95.37  E-value=0.38  Score=32.73  Aligned_cols=69  Identities=12%  Similarity=-0.019  Sum_probs=48.8

Q ss_pred             ceEEeeCCCCeEEEEecCCCCCCCeEEEEEcC-CCCcEEEEeCCCCCceeEEEecCCCeEEEEeCCCCeEEEEeCC
Q psy959           24 RHFMPPIRLRTLYYTDWGRFGTAGKILRTTMA-GSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIERSDLA   98 (109)
Q Consensus        24 ~~iavd~~~g~lywsd~~~~~~~~~I~~~~~d-G~~~~~l~~~~~~~p~glaiD~~~~~lYw~D~~~~~I~~~~~d   98 (109)
                      .|+++|.  +.||.+....  ..+.|.+.++. |.-...+--..-....|++++  +++||-+.+..+++...+.+
T Consensus        24 qGL~~~~--~~LyestG~~--g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~v~v~D~~   93 (243)
T 3mbr_X           24 EGLFYLR--GHLYESTGET--GRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHEGFVYDLA   93 (243)
T ss_dssp             EEEEEET--TEEEEEECCT--TSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETT
T ss_pred             ccEEEEC--CEEEEECCCC--CCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCEEEEEECC
Confidence            5899986  8999997642  14789999985 544444432233344566666  79999999988888888764

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=95.37  E-value=0.38  Score=34.14  Aligned_cols=76  Identities=13%  Similarity=-0.006  Sum_probs=52.9

Q ss_pred             cce---EEeeCCCCeEEEEecCCC-----CCCCeEEEEEcCCCCc-EEEEeCCCCCceeEEEecCCC-eEEEEeCCCCeE
Q psy959           23 RRH---FMPPIRLRTLYYTDWGRF-----GTAGKILRTTMAGSLK-KVIIEKDLSQPSGLAIDFDDE-MLYWTDAVREKI   92 (109)
Q Consensus        23 p~~---iavd~~~g~lywsd~~~~-----~~~~~I~~~~~dG~~~-~~l~~~~~~~p~glaiD~~~~-~lYw~D~~~~~I   92 (109)
                      |.+   +++++..++||.+.....     .....|.+.+...... ..|-.  -..|.++++++..+ ++|-+....+.|
T Consensus       266 p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~--g~~p~~i~~s~Dg~~~l~v~~~~~~~V  343 (373)
T 2mad_H          266 PGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL--GHDVDAISVAQDGGPDLYALSAGTEVL  343 (373)
T ss_pred             cCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEEC--CCCcCeEEECCCCCeEEEEEcCCCCeE
Confidence            555   889998899999764210     0135788888764333 44422  23699999999988 788877777888


Q ss_pred             EEEeCCCC
Q psy959           93 ERSDLAGN  100 (109)
Q Consensus        93 ~~~~~dG~  100 (109)
                      ...+....
T Consensus       344 ~ViD~~t~  351 (373)
T 2mad_H          344 HIYDAGAG  351 (373)
T ss_pred             EEEECCCC
Confidence            88887643

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=95.34  E-value=0.19  Score=34.10  Aligned_cols=76  Identities=9%  Similarity=-0.020  Sum_probs=56.2

Q ss_pred             CcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCCcEEEEeCCCCCceeEEEecCCCeEEEEeCCCCeEEEEeCC-CC
Q psy959           22 GRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIERSDLA-GN  100 (109)
Q Consensus        22 ~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glaiD~~~~~lYw~D~~~~~I~~~~~d-G~  100 (109)
                      .|+++++++ .|.+++++..    .++|...+.+|...-.+-.  -..|.+.+++ .++.++.++...++|...+.+ |+
T Consensus       126 ~~~~v~~~~-~G~~lv~~~~----~~~v~~~d~~G~~~w~~~~--~~~~~~~~~~-~~g~~~v~~~~~~~v~~~d~~tG~  197 (276)
T 3no2_A          126 QFRQINKNK-KGNYLVPLFA----TSEVREIAPNGQLLNSVKL--SGTPFSSAFL-DNGDCLVACGDAHCFVQLNLESNR  197 (276)
T ss_dssp             SCSCCEECT-TSCEEEEETT----TTEEEEECTTSCEEEEEEC--SSCCCEEEEC-TTSCEEEECBTTSEEEEECTTTCC
T ss_pred             cccCceECC-CCCEEEEecC----CCEEEEECCCCCEEEEEEC--CCCccceeEc-CCCCEEEEeCCCCeEEEEeCcCCc
Confidence            467788887 7888888876    6899999988776555433  2478888876 456777888877889998888 77


Q ss_pred             CeEEE
Q psy959          101 NREAL  105 (109)
Q Consensus       101 ~~~~l  105 (109)
                      -.-.+
T Consensus       198 ~~w~~  202 (276)
T 3no2_A          198 IVRRV  202 (276)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            55443

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=95.31  E-value=0.28  Score=35.54  Aligned_cols=78  Identities=12%  Similarity=-0.115  Sum_probs=52.3

Q ss_pred             CCcceEEeeCCCCeEEEEecCC----CC-CCCeEEEEEcCCC-CcEEEEeCC------CCCceeEEEecCCCeEEEEeCC
Q psy959           21 PGRRHFMPPIRLRTLYYTDWGR----FG-TAGKILRTTMAGS-LKKVIIEKD------LSQPSGLAIDFDDEMLYWTDAV   88 (109)
Q Consensus        21 ~~p~~iavd~~~g~lywsd~~~----~~-~~~~I~~~~~dG~-~~~~l~~~~------~~~p~glaiD~~~~~lYw~D~~   88 (109)
                      ..|. +++.|..+++|.++...    ++ ....|.+.+.... ....|....      ...|.++++++..++||.+...
T Consensus        79 ~~P~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~  157 (386)
T 3sjl_D           79 FLPN-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFS  157 (386)
T ss_dssp             SSCE-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECS
T ss_pred             CCCc-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcC
Confidence            4574 99999888999998520    00 0245777776533 233443221      2479999999999999999864


Q ss_pred             -CCeEEEEeCCC
Q psy959           89 -REKIERSDLAG   99 (109)
Q Consensus        89 -~~~I~~~~~dG   99 (109)
                       ...|...+..-
T Consensus       158 ~~~~VsVID~~t  169 (386)
T 3sjl_D          158 PAPAVGVVDLEG  169 (386)
T ss_dssp             SSCEEEEEETTT
T ss_pred             CCCeEEEEECCC
Confidence             56777776653

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=95.25  E-value=0.34  Score=31.42  Aligned_cols=87  Identities=14%  Similarity=0.035  Sum_probs=59.4

Q ss_pred             cEEEecCCCCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCC-CCcEEEEeCC-CCCceeEEEecCCCeEEEEeCC--
Q psy959           13 RSLLLQAIPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAG-SLKKVIIEKD-LSQPSGLAIDFDDEMLYWTDAV--   88 (109)
Q Consensus        13 ~~~li~~l~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG-~~~~~l~~~~-~~~p~glaiD~~~~~lYw~D~~--   88 (109)
                      .+.+...-..+.++++.|...+|+++.      ...|...++++ .....+.... ...+..+++.+....|+++...  
T Consensus        34 ~~~~~~~~~~v~~~~~spdg~~l~~~~------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~  107 (297)
T 2ojh_A           34 MRVVWQTPELFEAPNWSPDGKYLLLNS------EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEF  107 (297)
T ss_dssp             EEEEEEESSCCEEEEECTTSSEEEEEE------TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTT
T ss_pred             eeeeccCCcceEeeEECCCCCEEEEEc------CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCC
Confidence            333443345567899999666677654      36899999987 6555444322 2456779999999999998743  


Q ss_pred             -CCeEEEEeCCCCCeEEE
Q psy959           89 -REKIERSDLAGNNREAL  105 (109)
Q Consensus        89 -~~~I~~~~~dG~~~~~l  105 (109)
                       ...|...+.++...+.+
T Consensus       108 ~~~~l~~~~~~~~~~~~~  125 (297)
T 2ojh_A          108 GKSAIYLLPSTGGTPRLM  125 (297)
T ss_dssp             SSCEEEEEETTCCCCEEC
T ss_pred             CcceEEEEECCCCceEEe
Confidence             57888888877655443

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=95.16  E-value=0.29  Score=33.90  Aligned_cols=66  Identities=12%  Similarity=0.013  Sum_probs=48.7

Q ss_pred             ceEEeeCCCCeEEEEecCCCCCCCeEEEEEcC-CCCcEEEEeCCCCCceeEEEecCCCeEEEEeCCCCeEEEEeCC
Q psy959           24 RHFMPPIRLRTLYYTDWGRFGTAGKILRTTMA-GSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIERSDLA   98 (109)
Q Consensus        24 ~~iavd~~~g~lywsd~~~~~~~~~I~~~~~d-G~~~~~l~~~~~~~p~glaiD~~~~~lYw~D~~~~~I~~~~~d   98 (109)
                      .||.++  .+.||.+...    ...|.+.++. |.-...+ ...-....|++++  +++||.+.+..+.+...+.+
T Consensus        58 qGL~~~--~~~Ly~stG~----~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~  124 (268)
T 3nok_A           58 QGLVFH--QGHFFESTGH----QGTLRQLSLESAQPVWME-RLGNIFAEGLASD--GERLYQLTWTEGLLFTWSGM  124 (268)
T ss_dssp             EEEEEE--TTEEEEEETT----TTEEEECCSSCSSCSEEE-ECTTCCEEEEEEC--SSCEEEEESSSCEEEEEETT
T ss_pred             ceEEEE--CCEEEEEcCC----CCEEEEEECCCCcEEeEE-CCCCcceeEEEEe--CCEEEEEEccCCEEEEEECC
Confidence            588888  5899999876    5678888885 6666655 3333334567765  78999999988888887764

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=95.15  E-value=0.4  Score=32.47  Aligned_cols=74  Identities=9%  Similarity=-0.095  Sum_probs=53.5

Q ss_pred             CCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcC-CCCcEEEEeC-----CCCCceeEEEecCCCeEEEEeC-C-----
Q psy959           21 PGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMA-GSLKKVIIEK-----DLSQPSGLAIDFDDEMLYWTDA-V-----   88 (109)
Q Consensus        21 ~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~d-G~~~~~l~~~-----~~~~p~glaiD~~~~~lYw~D~-~-----   88 (109)
                      ..|.++++.+ +|.++.++..    ..+|...+.+ |...-.+-..     .+..|.++++.+ ++.+|.++. +     
T Consensus       165 ~~~~~~~~~~-~g~~~v~~~~----~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~-~G~i~v~~~~g~~~~~  238 (276)
T 3no2_A          165 GTPFSSAFLD-NGDCLVACGD----AHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQ-NGGLYICNWQGHDREA  238 (276)
T ss_dssp             SCCCEEEECT-TSCEEEECBT----TSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECT-TSCEEEEEECTTCTTG
T ss_pred             CCccceeEcC-CCCEEEEeCC----CCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcC-CCCEEEEeccCccccc
Confidence            4688888887 7888888876    5789998887 8776665432     245689999874 778999985 2     


Q ss_pred             ----CCeEEEEeCCCC
Q psy959           89 ----REKIERSDLAGN  100 (109)
Q Consensus        89 ----~~~I~~~~~dG~  100 (109)
                          ..++..++-+|+
T Consensus       239 ~~~~~~~~~~~~~~g~  254 (276)
T 3no2_A          239 GKGKHPQLVEIDSEGK  254 (276)
T ss_dssp             GGSCCCSEEEECTTSB
T ss_pred             cccCCceEEEECCCCC
Confidence                235666666665

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=95.01  E-value=0.57  Score=34.91  Aligned_cols=74  Identities=9%  Similarity=-0.066  Sum_probs=54.0

Q ss_pred             CcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcC-CCCcEEEEeCCCCCceeEEEecCCCeEEEEeCCCCeEEEEeCCC
Q psy959           22 GRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMA-GSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIERSDLAG   99 (109)
Q Consensus        22 ~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~d-G~~~~~l~~~~~~~p~glaiD~~~~~lYw~D~~~~~I~~~~~dG   99 (109)
                      .|.++++.+..+.+|.+...    ..+|...+.. +....+.....-..|.++++++..+++|.+....+.|...+...
T Consensus       281 ~v~~i~~s~~~~~~~vs~~~----~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~t  355 (543)
T 1nir_A          281 RVAAIIASHEHPEFIVNVKE----TGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKD  355 (543)
T ss_dssp             CEEEEEECSSSSEEEEEETT----TTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTT
T ss_pred             ceEEEEECCCCCEEEEEECC----CCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCC
Confidence            45678888877888888766    6899999885 33333111123467999999999999999988777888877653

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=95.01  E-value=0.12  Score=37.85  Aligned_cols=72  Identities=14%  Similarity=0.033  Sum_probs=52.1

Q ss_pred             EEeeCCCCeEEEEecCCC-----CCCCeEEEEEcCCC-CcEEEEeCCCCCceeEEEecCCC-eEEEEeCCCCeEEEEeCC
Q psy959           26 FMPPIRLRTLYYTDWGRF-----GTAGKILRTTMAGS-LKKVIIEKDLSQPSGLAIDFDDE-MLYWTDAVREKIERSDLA   98 (109)
Q Consensus        26 iavd~~~g~lywsd~~~~-----~~~~~I~~~~~dG~-~~~~l~~~~~~~p~glaiD~~~~-~lYw~D~~~~~I~~~~~d   98 (109)
                      +++++..+++|.++....     .....|.+.+.... ....|-..  ..|.+|++++..+ +||-+.+..+.|...+..
T Consensus       324 va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg--~~P~gia~spDg~~~lyv~n~~s~~VsVID~~  401 (426)
T 3c75_H          324 TAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELG--HEIDSINVSQDAEPLLYALSAGTQTLHIYDAA  401 (426)
T ss_dssp             EEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE--EEECEEEECCSSSCEEEEEETTTTEEEEEETT
T ss_pred             eEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECC--CCcCeEEEccCCCEEEEEEcCCCCeEEEEECC
Confidence            899998899999975310     01247888887533 33344222  2699999999998 999999888888888865


Q ss_pred             C
Q psy959           99 G   99 (109)
Q Consensus        99 G   99 (109)
                      -
T Consensus       402 t  402 (426)
T 3c75_H          402 T  402 (426)
T ss_dssp             T
T ss_pred             C
Confidence            3

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=94.95  E-value=0.43  Score=30.94  Aligned_cols=84  Identities=14%  Similarity=0.069  Sum_probs=55.8

Q ss_pred             CCCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCCcEEEEeCCCCCceeEEEecCCCeEEEEeCC----------C
Q psy959           20 IPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAV----------R   89 (109)
Q Consensus        20 l~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glaiD~~~~~lYw~D~~----------~   89 (109)
                      -..+.+++..|....|+++....  ....|...+.++.....+.. ....+..+++++..+.|+++...          .
T Consensus       172 ~~~~~~~~~s~dg~~l~~~~~~~--~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~  248 (297)
T 2ojh_A          172 EGRNDGPDYSPDGRWIYFNSSRT--GQMQIWRVRVDGSSVERITD-SAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLD  248 (297)
T ss_dssp             SSCEEEEEECTTSSEEEEEECTT--SSCEEEEEETTSSCEEECCC-CSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEE
T ss_pred             CCccccceECCCCCEEEEEecCC--CCccEEEECCCCCCcEEEec-CCcccCCeEECCCCCEEEEEEcCCCCCcccccCc
Confidence            34567889999666787775321  15678887777766554432 22345678888888888887653          2


Q ss_pred             CeEEEEeCCCCCeEEEE
Q psy959           90 EKIERSDLAGNNREALY  106 (109)
Q Consensus        90 ~~I~~~~~dG~~~~~l~  106 (109)
                      ..|...++++...+.+.
T Consensus       249 ~~l~~~d~~~~~~~~~~  265 (297)
T 2ojh_A          249 VRVQLMDMDGGNVETLF  265 (297)
T ss_dssp             EEEEEEETTSCSCEEEE
T ss_pred             eEEEEEecCCCCceeee
Confidence            56888898876655443

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=94.61  E-value=0.4  Score=35.69  Aligned_cols=73  Identities=16%  Similarity=0.118  Sum_probs=53.5

Q ss_pred             CcceEEe--eCCCCeEEEEec-----CCCCCCCeEEEEEcCCCC---cEEE-EeC-----C-----------CCCceeEE
Q psy959           22 GRRHFMP--PIRLRTLYYTDW-----GRFGTAGKILRTTMAGSL---KKVI-IEK-----D-----------LSQPSGLA   74 (109)
Q Consensus        22 ~p~~iav--d~~~g~lywsd~-----~~~~~~~~I~~~~~dG~~---~~~l-~~~-----~-----------~~~p~gla   74 (109)
                      .|+.|++  +|...++|.+..     .    .+.|.+...|+..   .+++ +..     .           -..|.+|.
T Consensus       252 ~P~~i~f~~~Pdg~~aYV~~e~~~~~L----ss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~  327 (462)
T 2ece_A          252 MALELRPLHDPTKLMGFINMVVSLKDL----SSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDID  327 (462)
T ss_dssp             EEEEEEECSSTTCCEEEEEEEEETTTC----CEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEE
T ss_pred             ccceeEeeECCCCCEEEEEEeeeccCC----CceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEE
Confidence            5777766  998889999886     4    5788877776421   1122 111     0           14689999


Q ss_pred             EecCCCeEEEEeCCCCeEEEEeCC
Q psy959           75 IDFDDEMLYWTDAVREKIERSDLA   98 (109)
Q Consensus        75 iD~~~~~lYw~D~~~~~I~~~~~d   98 (109)
                      +.+..++||.+.++.+.|...+.+
T Consensus       328 lS~DGrfLYVSnrg~d~VavfdV~  351 (462)
T 2ece_A          328 ISLDDKFLYLSLWGIGEVRQYDIS  351 (462)
T ss_dssp             ECTTSCEEEEEETTTTEEEEEECS
T ss_pred             ECCCCCEEEEEeCCCCEEEEEEec
Confidence            999999999999999999998874

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=94.35  E-value=0.94  Score=32.22  Aligned_cols=96  Identities=11%  Similarity=0.012  Sum_probs=65.3

Q ss_pred             CCCCCccEEEecCCCCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCCcEEEEeCCCCCceeEEEecCCCeEEEEe
Q psy959            7 DLLKTHRSLLLQAIPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTD   86 (109)
Q Consensus         7 ~l~G~~~~~li~~l~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glaiD~~~~~lYw~D   86 (109)
                      +++|...+.+...-....+++..|...+|+++....  ....|...++++...+.+.. .-..+..+++.|.+.+|+++-
T Consensus       165 d~~g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~--~~~~i~~~d~~tg~~~~l~~-~~~~~~~~~~spdg~~la~~~  241 (415)
T 2hqs_A          165 DYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFES--GRSALVIQTLANGAVRQVAS-FPRHNGAPAFSPDGSKLAFAL  241 (415)
T ss_dssp             ETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTT--SSCEEEEEETTTCCEEEEEC-CSSCEEEEEECTTSSEEEEEE
T ss_pred             cCCCCCCEEEeCCCCcceeeEEcCCCCEEEEEEecC--CCcEEEEEECCCCcEEEeec-CCCcccCEEEcCCCCEEEEEE
Confidence            455655555554445667889999777888876531  14689999997665555443 234677899999998888776


Q ss_pred             CC--CCeEEEEeCCCCCeEEE
Q psy959           87 AV--REKIERSDLAGNNREAL  105 (109)
Q Consensus        87 ~~--~~~I~~~~~dG~~~~~l  105 (109)
                      ..  ...|...++++...+.+
T Consensus       242 ~~~g~~~i~~~d~~~~~~~~l  262 (415)
T 2hqs_A          242 SKTGSLNLYVMDLASGQIRQV  262 (415)
T ss_dssp             CTTSSCEEEEEETTTCCEEEC
T ss_pred             ecCCCceEEEEECCCCCEEeC
Confidence            43  45688888876655443

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=93.87  E-value=0.81  Score=30.93  Aligned_cols=80  Identities=10%  Similarity=-0.034  Sum_probs=52.9

Q ss_pred             CCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCCcEEEEeCCCCCceeEEEecCCCeEEEEeCC------------
Q psy959           21 PGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAV------------   88 (109)
Q Consensus        21 ~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glaiD~~~~~lYw~D~~------------   88 (109)
                      ....+++..|...+|+++..........|...++++...+.+.....  +.+++..|.+++|+++...            
T Consensus        59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~--~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~  136 (347)
T 2gop_A           59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN--IRSLEWNEDSRKLLIVGFKRREDEDFIFEDD  136 (347)
T ss_dssp             ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE--EEEEEECTTSSEEEEEEECCCC---------
T ss_pred             ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC--ccceeECCCCCEEEEEEccCCCcCCcEEEcc
Confidence            34556788886677887754310013568898988766555554322  7788888888888887521            


Q ss_pred             --------------CCeEEEEeCCCCCe
Q psy959           89 --------------REKIERSDLAGNNR  102 (109)
Q Consensus        89 --------------~~~I~~~~~dG~~~  102 (109)
                                    ...|...++++...
T Consensus       137 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~  164 (347)
T 2gop_A          137 VPAWFDDLGFFDGEKTTFWIFDTESEEV  164 (347)
T ss_dssp             CCCC---------CEEEEEEEETTTTEE
T ss_pred             cceeecCcccccCccceEEEEECCCCeE
Confidence                          35688888876654

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=93.77  E-value=0.95  Score=30.97  Aligned_cols=85  Identities=12%  Similarity=-0.027  Sum_probs=52.3

Q ss_pred             CCcceEEeeC-CCCeEEEEecCCC-CCCCeEEEEEcCCCCcEEEEeCC-CCCceeEEEecCCCeEEEEeC--CCCe--EE
Q psy959           21 PGRRHFMPPI-RLRTLYYTDWGRF-GTAGKILRTTMAGSLKKVIIEKD-LSQPSGLAIDFDDEMLYWTDA--VREK--IE   93 (109)
Q Consensus        21 ~~p~~iavd~-~~g~lywsd~~~~-~~~~~I~~~~~dG~~~~~l~~~~-~~~p~glaiD~~~~~lYw~D~--~~~~--I~   93 (109)
                      .....++..| ..+.|+++..... ....+|...+.+|...+.+.... ...+..+++.+..++|+++..  +...  |.
T Consensus       188 ~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~  267 (396)
T 3c5m_A          188 AWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIY  267 (396)
T ss_dssp             SCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEE
T ss_pred             cccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEE
Confidence            3455677777 4555777643310 00158999999887765554321 224566788888888887743  3334  88


Q ss_pred             EEeCCCCCeEEE
Q psy959           94 RSDLAGNNREAL  105 (109)
Q Consensus        94 ~~~~dG~~~~~l  105 (109)
                      ..++++...+.+
T Consensus       268 ~~d~~~g~~~~l  279 (396)
T 3c5m_A          268 KANPETLENEEV  279 (396)
T ss_dssp             EECTTTCCEEEE
T ss_pred             EEECCCCCeEEe
Confidence            888876655444

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=93.64  E-value=1.2  Score=30.73  Aligned_cols=69  Identities=9%  Similarity=-0.096  Sum_probs=48.5

Q ss_pred             ceEEeeCCCCeEEEEecCCCCCCCeEEEEEcC-CCCcEEEEeCCCCCceeEEEecCCCeEEEEeCCCCeEEEEeCC
Q psy959           24 RHFMPPIRLRTLYYTDWGRFGTAGKILRTTMA-GSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIERSDLA   98 (109)
Q Consensus        24 ~~iavd~~~g~lywsd~~~~~~~~~I~~~~~d-G~~~~~l~~~~~~~p~glaiD~~~~~lYw~D~~~~~I~~~~~d   98 (109)
                      .||.++  .+.||.+....  ..+.|.+.+++ |.-...+....-....||+++  +++||.+.+..+.+...+.+
T Consensus        46 qGL~~~--~~~LyestG~~--g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~--g~~ly~ltw~~~~v~v~D~~  115 (262)
T 3nol_A           46 EGFFYR--NGYFYESTGLN--GRSSIRKVDIESGKTLQQIELGKRYFGEGISDW--KDKIVGLTWKNGLGFVWNIR  115 (262)
T ss_dssp             EEEEEE--TTEEEEEEEET--TEEEEEEECTTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETT
T ss_pred             ceEEEE--CCEEEEECCCC--CCceEEEEECCCCcEEEEEecCCccceeEEEEe--CCEEEEEEeeCCEEEEEECc
Confidence            789988  57999998642  13588888885 554444433322234667776  88999999988888888765

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=93.45  E-value=0.71  Score=34.41  Aligned_cols=93  Identities=11%  Similarity=-0.017  Sum_probs=56.3

Q ss_pred             ccEEEe-cCCCCcceEEeeCCCCeEEEEecCCCC---CCCeEEEEEcCCC----CcEEEEeCCCCCceeEEEecCCCeEE
Q psy959           12 HRSLLL-QAIPGRRHFMPPIRLRTLYYTDWGRFG---TAGKILRTTMAGS----LKKVIIEKDLSQPSGLAIDFDDEMLY   83 (109)
Q Consensus        12 ~~~~li-~~l~~p~~iavd~~~g~lywsd~~~~~---~~~~I~~~~~dG~----~~~~l~~~~~~~p~glaiD~~~~~lY   83 (109)
                      ..+.+. ..-....++++.|...+|+|+......   ....|...+++++    ..+.+....-..+..++..+.++ +|
T Consensus       178 ~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~-l~  256 (662)
T 3azo_A          178 AVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGS-LI  256 (662)
T ss_dssp             GSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSC-EE
T ss_pred             ceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCe-EE
Confidence            334443 333345567888977789988754210   1258999999842    34444433235677788887777 66


Q ss_pred             EEeCCC--CeEEEEeCCCCCeEEE
Q psy959           84 WTDAVR--EKIERSDLAGNNREAL  105 (109)
Q Consensus        84 w~D~~~--~~I~~~~~dG~~~~~l  105 (109)
                      ++....  .+|...+.++...+.+
T Consensus       257 ~~~~~~~~~~l~~~~~~~~~~~~l  280 (662)
T 3azo_A          257 VATDRTGWWNLHRVDPATGAATQL  280 (662)
T ss_dssp             EEECTTSSCEEEEECTTTCCEEES
T ss_pred             EEECCCCCeEEEEEECCCCceeec
Confidence            554433  3898888866554443

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=93.30  E-value=0.52  Score=32.40  Aligned_cols=82  Identities=9%  Similarity=-0.089  Sum_probs=46.0

Q ss_pred             eEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCCcEEEEeCCC-----CCceeEEEecCCCeEEEEe--------CCCCe
Q psy959           25 HFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDL-----SQPSGLAIDFDDEMLYWTD--------AVREK   91 (109)
Q Consensus        25 ~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~~~~l~~~~~-----~~p~glaiD~~~~~lYw~D--------~~~~~   91 (109)
                      ..+..|....|+|...........|++.++++...+.+.....     ..|.++++.+..+.|+++-        .+...
T Consensus       242 ~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~  321 (388)
T 3pe7_A          242 HEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPF  321 (388)
T ss_dssp             EEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCE
T ss_pred             cceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCE
Confidence            4677776666755443211011249999998766655544221     1245556666677777653        44567


Q ss_pred             EEEEeCCCCCeEEEE
Q psy959           92 IERSDLAGNNREALY  106 (109)
Q Consensus        92 I~~~~~dG~~~~~l~  106 (109)
                      |...++++...+.+.
T Consensus       322 i~~~d~~~~~~~~l~  336 (388)
T 3pe7_A          322 LYVFNMKNGTQHRVA  336 (388)
T ss_dssp             EEEEETTTTEEEEEE
T ss_pred             EEEEeccCCceEEec
Confidence            888888876665554

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=93.12  E-value=1.5  Score=31.64  Aligned_cols=72  Identities=10%  Similarity=0.022  Sum_probs=50.4

Q ss_pred             eEEeeCCCCeEEEEecCC-----CCCCCeEEEEEcCCCC-cEEEEeCCCCCceeEEEecCCC-eEEEEeCCCCeEEEEeC
Q psy959           25 HFMPPIRLRTLYYTDWGR-----FGTAGKILRTTMAGSL-KKVIIEKDLSQPSGLAIDFDDE-MLYWTDAVREKIERSDL   97 (109)
Q Consensus        25 ~iavd~~~g~lywsd~~~-----~~~~~~I~~~~~dG~~-~~~l~~~~~~~p~glaiD~~~~-~lYw~D~~~~~I~~~~~   97 (109)
                      .+++++..++||.+....     ++...+|.+.++.... .+.+...  ..|.+|++++..+ +||-+....+.|...+.
T Consensus       284 ~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg--~~~~~lavs~D~~~~ly~tn~~~~~VsViD~  361 (386)
T 3sjl_D          284 QVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG--HEIDSINVSQDEKPLLYALSTGDKTLYIHDA  361 (386)
T ss_dssp             CEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE--EEECEEEECSSSSCEEEEEETTTTEEEEEET
T ss_pred             eeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECC--CCcceEEECCCCCeEEEEEcCCCCeEEEEEC
Confidence            389999999999986411     1113578888875333 3333322  3788999999986 78988988888887775


Q ss_pred             C
Q psy959           98 A   98 (109)
Q Consensus        98 d   98 (109)
                      .
T Consensus       362 ~  362 (386)
T 3sjl_D          362 E  362 (386)
T ss_dssp             T
T ss_pred             C
Confidence            4

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=92.80  E-value=1.6  Score=29.92  Aligned_cols=99  Identities=13%  Similarity=0.007  Sum_probs=60.8

Q ss_pred             CCCCCccEEEecCCCCcceEEeeC-CCCeEEEEecCCC-CCCCeEEEEEcCCCCcEEEEeCCC-CCceeEEEecCCCeEE
Q psy959            7 DLLKTHRSLLLQAIPGRRHFMPPI-RLRTLYYTDWGRF-GTAGKILRTTMAGSLKKVIIEKDL-SQPSGLAIDFDDEMLY   83 (109)
Q Consensus         7 ~l~G~~~~~li~~l~~p~~iavd~-~~g~lywsd~~~~-~~~~~I~~~~~dG~~~~~l~~~~~-~~p~glaiD~~~~~lY   83 (109)
                      ++.+...+.+...-....++++.| ..+.|.++..... .....|...+.+|...+.+..... ......+..+..++|+
T Consensus       174 d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~  253 (388)
T 3pe7_A          174 DLKTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSALV  253 (388)
T ss_dssp             ETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTSSCEE
T ss_pred             ECCCCceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceECCCCCEEE
Confidence            344444444444334456788888 6667766654311 114689999999887776654221 1244567888888886


Q ss_pred             EEeC--CCC--eEEEEeCCCCCeEEE
Q psy959           84 WTDA--VRE--KIERSDLAGNNREAL  105 (109)
Q Consensus        84 w~D~--~~~--~I~~~~~dG~~~~~l  105 (109)
                      ++..  +..  .|...++++...+.+
T Consensus       254 ~~~~~~~~~~~~l~~~d~~~g~~~~l  279 (388)
T 3pe7_A          254 YVSYLKGSPDRFIYSADPETLENRQL  279 (388)
T ss_dssp             EEEEETTCCCEEEEEECTTTCCEEEE
T ss_pred             EEecCCCCCcceEEEEecCCCceEEE
Confidence            6543  222  499999987776555

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=91.49  E-value=1.7  Score=31.92  Aligned_cols=78  Identities=10%  Similarity=-0.012  Sum_probs=55.0

Q ss_pred             ceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCCcEEEEeCCCCCceeEEEecCCCeEEEEeCC-CCeEEEEeCCCCCe
Q psy959           24 RHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAV-REKIERSDLAGNNR  102 (109)
Q Consensus        24 ~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glaiD~~~~~lYw~D~~-~~~I~~~~~dG~~~  102 (109)
                      .+++++|....|+++..... ....|++.++++...+.+. ........++..|.++.||.++.. ...|...++++...
T Consensus       153 ~~~~~spDG~~la~~~~~~~-~~~~i~~~d~~~g~~~~l~-~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~  230 (582)
T 3o4h_A          153 FGFVSDIRGDLIAGLGFFGG-GRVSLFTSNLSSGGLRVFD-SGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSV  230 (582)
T ss_dssp             CEEEEEEETTEEEEEEEEET-TEEEEEEEETTTCCCEEEC-CSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCE
T ss_pred             ceEEECCCCCEEEEEEEcCC-CCeEEEEEcCCCCCceEee-cCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcE
Confidence            67888887778876643211 1267999998876666653 333456788999999999955543 24899999998776


Q ss_pred             E
Q psy959          103 E  103 (109)
Q Consensus       103 ~  103 (109)
                      +
T Consensus       231 ~  231 (582)
T 3o4h_A          231 E  231 (582)
T ss_dssp             E
T ss_pred             E
Confidence            6

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=91.47  E-value=2.4  Score=32.50  Aligned_cols=68  Identities=9%  Similarity=0.038  Sum_probs=44.9

Q ss_pred             CCCcceEEe-e-CCCCeEEEEecCCC-------------CCCCeEEEEEcCCCCcEEEEeCCC-CCceeEEEecCCCeEE
Q psy959           20 IPGRRHFMP-P-IRLRTLYYTDWGRF-------------GTAGKILRTTMAGSLKKVIIEKDL-SQPSGLAIDFDDEMLY   83 (109)
Q Consensus        20 l~~p~~iav-d-~~~g~lywsd~~~~-------------~~~~~I~~~~~dG~~~~~l~~~~~-~~p~glaiD~~~~~lY   83 (109)
                      -..|.++++ . |.++++|.+....-             .....+.+.+.+  ..+++.+-.+ .+|.++++++..+++|
T Consensus       133 g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~--t~~v~~qI~Vgg~pd~~~~spdGk~~~  210 (595)
T 1fwx_A          133 AKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDAD--KWEVAWQVLVSGNLDNCDADYEGKWAF  210 (595)
T ss_dssp             CCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETT--TTEEEEEEEESSCCCCEEECSSSSEEE
T ss_pred             CCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECC--CCeEEEEEEeCCCccceEECCCCCEEE
Confidence            467999998 4 88999998852210             002345554444  4444433111 3899999999999999


Q ss_pred             EEeCCC
Q psy959           84 WTDAVR   89 (109)
Q Consensus        84 w~D~~~   89 (109)
                      .+....
T Consensus       211 vt~~~s  216 (595)
T 1fwx_A          211 STSYNS  216 (595)
T ss_dssp             EEESCT
T ss_pred             EEecCc
Confidence            998754

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=91.45  E-value=0.85  Score=32.61  Aligned_cols=76  Identities=9%  Similarity=-0.032  Sum_probs=49.0

Q ss_pred             Ccce---EEeeCCCCeEEEEec---CCC-CCCCeEEEEEcCCCC-cEEEEeCCCCCceeEEEecCCCeEEEEeC-CCCeE
Q psy959           22 GRRH---FMPPIRLRTLYYTDW---GRF-GTAGKILRTTMAGSL-KKVIIEKDLSQPSGLAIDFDDEMLYWTDA-VREKI   92 (109)
Q Consensus        22 ~p~~---iavd~~~g~lywsd~---~~~-~~~~~I~~~~~dG~~-~~~l~~~~~~~p~glaiD~~~~~lYw~D~-~~~~I   92 (109)
                      .|.+   +++++..+++|.+..   +.. .......+.++.... ...|-.  -..|.+|++++..+++|.+.. ..+.|
T Consensus       262 ~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~v--g~~p~gi~~s~Dg~~l~va~~~~~~~V  339 (368)
T 1mda_H          262 RSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISN--GHDSDAIIAAQDGASDNYANSAGTEVL  339 (368)
T ss_dssp             EECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEE--EEEECEEEECCSSSCEEEEEETTTTEE
T ss_pred             ccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEEC--CCCcceEEECCCCCEEEEEccCCCCeE
Confidence            3555   899998899999864   200 000233466654322 222221  126999999999888999888 68889


Q ss_pred             EEEeCCC
Q psy959           93 ERSDLAG   99 (109)
Q Consensus        93 ~~~~~dG   99 (109)
                      ...++.-
T Consensus       340 sVID~~t  346 (368)
T 1mda_H          340 DIYDAAS  346 (368)
T ss_dssp             EEEESSS
T ss_pred             EEEECCC
Confidence            8888753

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=91.23  E-value=3.7  Score=32.72  Aligned_cols=77  Identities=9%  Similarity=0.006  Sum_probs=54.3

Q ss_pred             CCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCCcEEEEeCCCCCceeEEEecCCCeEEEEeCC---------CCe
Q psy959           21 PGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAV---------REK   91 (109)
Q Consensus        21 ~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glaiD~~~~~lYw~D~~---------~~~   91 (109)
                      ..+.++++.|....|+++..     ...|...++++.....+..........+++.|..+.|.++...         ...
T Consensus       379 ~~~~~~~~SpDG~~la~~~~-----~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~  453 (1045)
T 1k32_A          379 GNVFAMGVDRNGKFAVVAND-----RFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQA  453 (1045)
T ss_dssp             CSEEEEEECTTSSEEEEEET-----TSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEE
T ss_pred             cceeeeEECCCCCEEEEECC-----CCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCe
Confidence            45678899997677777654     3689999997666555554444455788999989888887542         247


Q ss_pred             EEEEeCCCCCe
Q psy959           92 IERSDLAGNNR  102 (109)
Q Consensus        92 I~~~~~dG~~~  102 (109)
                      |...++++...
T Consensus       454 i~l~d~~~g~~  464 (1045)
T 1k32_A          454 IHVYDMEGRKI  464 (1045)
T ss_dssp             EEEEETTTTEE
T ss_pred             EEEEECCCCcE
Confidence            88888776543

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=90.89  E-value=0.95  Score=34.74  Aligned_cols=74  Identities=9%  Similarity=-0.044  Sum_probs=57.0

Q ss_pred             CCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCC---------c-EEEEe-CCCCCceeEEEecCCCeEEEEeCCC
Q psy959           21 PGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSL---------K-KVIIE-KDLSQPSGLAIDFDDEMLYWTDAVR   89 (109)
Q Consensus        21 ~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~---------~-~~l~~-~~~~~p~glaiD~~~~~lYw~D~~~   89 (109)
                      ..|.|+++.|...++|.++..    ..++.+.+.+...         + .++.. .--..|..+++|+.. ++|-+-...
T Consensus       277 ~~PhGv~~sPDGk~v~V~~~~----s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG-~aY~t~~ld  351 (595)
T 1fwx_A          277 NNPHGCNMAPDKKHLCVAGKL----SPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRG-NAYTSLFLD  351 (595)
T ss_dssp             SSCCCEEECTTSSEEEEECTT----SSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEECTTS-EEEEEETTT
T ss_pred             CCceEEEEcCCCCEEEEeCCC----CCeEEEEECcccccccccccCcccceEEEcCCCCCcceEEECCCC-eEEEEEecC
Confidence            689999999988899999987    6899998887321         1 12222 223579999999887 999999888


Q ss_pred             CeEEEEeCCC
Q psy959           90 EKIERSDLAG   99 (109)
Q Consensus        90 ~~I~~~~~dG   99 (109)
                      ..|...+++.
T Consensus       352 sqV~kwdi~~  361 (595)
T 1fwx_A          352 SQVVKWNIED  361 (595)
T ss_dssp             TEEEEEEHHH
T ss_pred             CcEEEEEhhH
Confidence            8888887764

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=90.61  E-value=2.9  Score=28.49  Aligned_cols=82  Identities=10%  Similarity=0.048  Sum_probs=53.4

Q ss_pred             cceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCCcEEEEeCCCCCceeEEEecCCCeEEEEeCCCCeEEEEeCCCCCe
Q psy959           23 RRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIERSDLAGNNR  102 (109)
Q Consensus        23 p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glaiD~~~~~lYw~D~~~~~I~~~~~dG~~~  102 (109)
                      +.++++.|...+|+|+....  ....|...++++...+.+.........+++..+.+++|+++.... .|...++++...
T Consensus        38 ~~~~~~SpdG~~l~~~~~~~--g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~-~l~~~d~~~~~~  114 (396)
T 3c5m_A           38 FYQKCFTQDGKKLLFAGDFD--GNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNEL-NLMKVDLETLEE  114 (396)
T ss_dssp             TTSCCBCTTSCEEEEEECTT--SSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTT-EEEEEETTTCCE
T ss_pred             eecCcCCCCCCEEEEEEecC--CCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCC-cEEEEECCCCCc
Confidence            56778888677777764321  146788888887655444332211122367788888998887643 799999988776


Q ss_pred             EEEEe
Q psy959          103 EALYL  107 (109)
Q Consensus       103 ~~l~~  107 (109)
                      +.+..
T Consensus       115 ~~~~~  119 (396)
T 3c5m_A          115 QVIYT  119 (396)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            66554

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=89.56  E-value=4.1  Score=30.24  Aligned_cols=82  Identities=6%  Similarity=-0.193  Sum_probs=44.9

Q ss_pred             CCCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCCcEEEEeCCCC--C------ceeEEEecCCCeEEEEeCCCCe
Q psy959           20 IPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLS--Q------PSGLAIDFDDEMLYWTDAVREK   91 (109)
Q Consensus        20 l~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~~~~l~~~~~~--~------p~glaiD~~~~~lYw~D~~~~~   91 (109)
                      -..+.+++..| .|.+|++....  ...+|++.++++...+.+......  .      ...+++.+....+|-...+..+
T Consensus       241 ~~~~~~~~~sp-dg~l~~~~~~~--~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~  317 (662)
T 3azo_A          241 EEAIAQAEWAP-DGSLIVATDRT--GWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGKGAAV  317 (662)
T ss_dssp             TBCEEEEEECT-TSCEEEEECTT--SSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBSSSCE
T ss_pred             CceEcceEECC-CCeEEEEECCC--CCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEcCccE
Confidence            35566778777 45577665431  134888888865554444332111  1      2456665444444433334557


Q ss_pred             EEEEeCCCCCeEE
Q psy959           92 IERSDLAGNNREA  104 (109)
Q Consensus        92 I~~~~~dG~~~~~  104 (109)
                      |..++.+|...+.
T Consensus       318 l~~~d~~~~~~~~  330 (662)
T 3azo_A          318 LGILDPESGELVD  330 (662)
T ss_dssp             EEEEETTTTEEEE
T ss_pred             EEEEECCCCcEEE
Confidence            7777777655443

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=89.15  E-value=3.6  Score=30.95  Aligned_cols=77  Identities=5%  Similarity=-0.032  Sum_probs=53.4

Q ss_pred             CcceEEeeCCCCeEEEEecCCC-CCCCeEEEEEcCCCCcEEEEeCCCC------------------------CceeEEEe
Q psy959           22 GRRHFMPPIRLRTLYYTDWGRF-GTAGKILRTTMAGSLKKVIIEKDLS------------------------QPSGLAID   76 (109)
Q Consensus        22 ~p~~iavd~~~g~lywsd~~~~-~~~~~I~~~~~dG~~~~~l~~~~~~------------------------~p~glaiD   76 (109)
                      .+.++++.|...+|+++..... .....|...++++...+.+......                        .+..+++.
T Consensus        38 ~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~S  117 (741)
T 2ecf_A           38 TLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWS  117 (741)
T ss_dssp             CCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEEC
T ss_pred             CCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEEC
Confidence            4678999996777888765210 0013899999987665555542211                        14678999


Q ss_pred             cCCCeEEEEeCCCCeEEEEeCCCC
Q psy959           77 FDDEMLYWTDAVREKIERSDLAGN  100 (109)
Q Consensus        77 ~~~~~lYw~D~~~~~I~~~~~dG~  100 (109)
                      +..++|+.+..  ..|...++++.
T Consensus       118 pDg~~l~~~~~--~~i~~~d~~~~  139 (741)
T 2ecf_A          118 PDAQRLLFPLG--GELYLYDLKQE  139 (741)
T ss_dssp             TTSSEEEEEET--TEEEEEESSSC
T ss_pred             CCCCEEEEEeC--CcEEEEECCCC
Confidence            99999888876  78888888776

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=87.94  E-value=3  Score=31.23  Aligned_cols=77  Identities=9%  Similarity=0.100  Sum_probs=47.6

Q ss_pred             ceEEeeC--CCCeEEEEecCCCCCCCeEEEEEcCCCCcEEEEeCCCCCcee-EEEecCCCeEEEEeCCC----CeEEEEe
Q psy959           24 RHFMPPI--RLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSG-LAIDFDDEMLYWTDAVR----EKIERSD   96 (109)
Q Consensus        24 ~~iavd~--~~g~lywsd~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~p~g-laiD~~~~~lYw~D~~~----~~I~~~~   96 (109)
                      .+++..|  ....+|.++..   ...+|...+.+|...+.+.. ....... +++++.++.||.+....    ..|...+
T Consensus       313 ~~~~~sp~~dg~~l~~~~~~---g~~~l~~~~~~~~~~~~l~~-~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d  388 (706)
T 2z3z_A          313 HPLTFLPGSNNQFIWQSRRD---GWNHLYLYDTTGRLIRQVTK-GEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCID  388 (706)
T ss_dssp             SCCEECTTCSSEEEEEECTT---SSCEEEEEETTSCEEEECCC-SSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEE
T ss_pred             CCceeecCCCCEEEEEEccC---CccEEEEEECCCCEEEecCC-CCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEE
Confidence            4567766  44444434322   25678888777765555532 2222334 78999999999987654    3888888


Q ss_pred             CCCCCeEE
Q psy959           97 LAGNNREA  104 (109)
Q Consensus        97 ~dG~~~~~  104 (109)
                      .++...+.
T Consensus       389 ~~~~~~~~  396 (706)
T 2z3z_A          389 IKGGKTKD  396 (706)
T ss_dssp             TTCCCCEE
T ss_pred             cCCCCcee
Confidence            87755443

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=86.56  E-value=1.7  Score=31.96  Aligned_cols=86  Identities=6%  Similarity=-0.163  Sum_probs=50.0

Q ss_pred             CCCCCccEEEecCCCCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCCcEEEEeCCCCCceeEE--------EecC
Q psy959            7 DLLKTHRSLLLQAIPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLA--------IDFD   78 (109)
Q Consensus         7 ~l~G~~~~~li~~l~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~p~gla--------iD~~   78 (109)
                      ++++...+.|...-....+++..|....|+.++..   ....|++.++++...+ ++...-..+.+++        +++.
T Consensus       181 d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~---~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spd  256 (582)
T 3o4h_A          181 NLSSGGLRVFDSGEGSFSSASISPGMKVTAGLETA---REARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPD  256 (582)
T ss_dssp             ETTTCCCEEECCSSCEEEEEEECTTSCEEEEEECS---SCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTT
T ss_pred             cCCCCCceEeecCCCccccceECCCCCEEEEccCC---CeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccceeEcCC
Confidence            34444444444333445778888866677744432   1348999999877766 4433223344455        7777


Q ss_pred             CCeEEEEeCCCCeEEEEeC
Q psy959           79 DEMLYWTDAVREKIERSDL   97 (109)
Q Consensus        79 ~~~lYw~D~~~~~I~~~~~   97 (109)
                      + ++|.+-...+.+....+
T Consensus       257 g-~~~~~~~~~g~~~l~~~  274 (582)
T 3o4h_A          257 G-RLAVVARREGRSAVFID  274 (582)
T ss_dssp             S-CEEEEEEETTEEEEEET
T ss_pred             C-cEEEEEEcCCcEEEEEE
Confidence            7 66666554445544444

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=85.98  E-value=4.9  Score=26.94  Aligned_cols=80  Identities=11%  Similarity=0.022  Sum_probs=51.8

Q ss_pred             CCCcceEEeeCCCCeEEEEecCC----CCCCCeEEEEEcCCCCcEEEEeCCCCCceeEEEecCCCeEEEEeCC----CCe
Q psy959           20 IPGRRHFMPPIRLRTLYYTDWGR----FGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAV----REK   91 (109)
Q Consensus        20 l~~p~~iavd~~~g~lywsd~~~----~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glaiD~~~~~lYw~D~~----~~~   91 (109)
                      +..+.+.++|  ..+++|+-...    ......|...++++...+.+     ..+..+++.|.+++|+++...    ...
T Consensus        14 ~~~~~~~~~d--G~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l-----~~~~~~~~SpDg~~la~~~~~~~~~~~~   86 (347)
T 2gop_A           14 FAYLSDPRTK--GELVAYVLTKANLKDNKYENTIVIENLKNNARRFI-----ENATMPRISPDGKKIAFMRANEEKKVSE   86 (347)
T ss_dssp             SCEEEEEEEE--TTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEEE-----ESCEEEEECTTSSEEEEEEEETTTTEEE
T ss_pred             eEEcccceEC--CcEEEEEEeecCcccCCccceEEEEeCCCCceEEc-----ccCCCeEECCCCCEEEEEEeccCCCcce
Confidence            3445566673  56777763210    00146788889887765555     356778999999998887652    346


Q ss_pred             EEEEeCCCCCeEEEE
Q psy959           92 IERSDLAGNNREALY  106 (109)
Q Consensus        92 I~~~~~dG~~~~~l~  106 (109)
                      |...+++|...+.+.
T Consensus        87 l~~~~~~~g~~~~l~  101 (347)
T 2gop_A           87 IWVADLETLSSKKIL  101 (347)
T ss_dssp             EEEEETTTTEEEEEE
T ss_pred             EEEEECCCCceEEEE
Confidence            888888876655554

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=84.84  E-value=4.4  Score=30.93  Aligned_cols=77  Identities=9%  Similarity=0.014  Sum_probs=49.5

Q ss_pred             cceEEeeCCCCeEE-EEecCCCCCCCeEEEEEcCCCCcEEEEeCCCCCceeEEEecCCCeEEEEeCC------CCeEEEE
Q psy959           23 RRHFMPPIRLRTLY-YTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAV------REKIERS   95 (109)
Q Consensus        23 p~~iavd~~~g~ly-wsd~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glaiD~~~~~lYw~D~~------~~~I~~~   95 (109)
                      +.+.+.-|....++ |....  +....|+..+.+|...+.|.........-+..|  ++.||++...      ...|.++
T Consensus       321 ~~~p~fspDG~~l~~~~s~~--~G~~~l~~~~~~~~~~~~lT~g~~~v~~~~~~d--~~~i~f~~~~~~~~~~~~~ly~v  396 (740)
T 4a5s_A          321 PSEPHFTLDGNSFYKIISNE--EGYRHICYFQIDKKDCTFITKGTWEVIGIEALT--SDYLYYISNEYKGMPGGRNLYKI  396 (740)
T ss_dssp             CCCCEECTTSSEEEEEEECT--TSCEEEEEEETTCSSCEESCCSSSCEEEEEEEC--SSEEEEEESCGGGCTTCBEEEEE
T ss_pred             CCCceEcCCCCEEEEEEEcC--CCceEEEEEECCCCceEecccCCEEEEEEEEEe--CCEEEEEEecCCCCCceeEEEEE
Confidence            34566667445555 55322  126889999999888776654332222223466  8899998764      3589999


Q ss_pred             eCCCCCeE
Q psy959           96 DLAGNNRE  103 (109)
Q Consensus        96 ~~dG~~~~  103 (109)
                      +++|...+
T Consensus       397 ~~~g~~~~  404 (740)
T 4a5s_A          397 QLIDYTKV  404 (740)
T ss_dssp             ETTEEEEE
T ss_pred             ECCCCCcc
Confidence            99987655

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=84.39  E-value=7.2  Score=29.66  Aligned_cols=79  Identities=13%  Similarity=0.066  Sum_probs=48.6

Q ss_pred             EeeCCCCeEEEEecCCCCCCCeEEEEEcCCCCcEEEEeCCCCCceeEEEecCCCeEEEEeC---CCCeEEEEeCCCCCeE
Q psy959           27 MPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDA---VREKIERSDLAGNNRE  103 (109)
Q Consensus        27 avd~~~g~lywsd~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glaiD~~~~~lYw~D~---~~~~I~~~~~dG~~~~  103 (109)
                      .+.+..++|+++....  ...+|...+++|...+.+.........++..++.++.|+.+-.   ....|...++++...+
T Consensus       332 ~~s~~g~~lv~~~~~~--g~~~l~~~d~~g~~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~  409 (693)
T 3iuj_A          332 TVHSGSGYLFAEYMVD--ATARVEQFDYEGKRVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAIS  409 (693)
T ss_dssp             EEEEETTEEEEEEEET--TEEEEEEECTTSCEEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEE
T ss_pred             EEEEECCEEEEEEEEC--CeeEEEEEECCCCeeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEE
Confidence            4555567777775431  1457888888887655543222223345555666777776643   2478999998876666


Q ss_pred             EEEe
Q psy959          104 ALYL  107 (109)
Q Consensus       104 ~l~~  107 (109)
                      .+.+
T Consensus       410 ~l~~  413 (693)
T 3iuj_A          410 LYRA  413 (693)
T ss_dssp             EEEC
T ss_pred             EEEe
Confidence            6543

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=83.83  E-value=12  Score=28.42  Aligned_cols=77  Identities=8%  Similarity=0.019  Sum_probs=46.8

Q ss_pred             eeCCCCeEEEEecC--CCCCCCeEEEEEcCCCCcEEEEeCCC----CCceeEEEecCCCeEEEEeC--CCCeEEEEeCCC
Q psy959           28 PPIRLRTLYYTDWG--RFGTAGKILRTTMAGSLKKVIIEKDL----SQPSGLAIDFDDEMLYWTDA--VREKIERSDLAG   99 (109)
Q Consensus        28 vd~~~g~lywsd~~--~~~~~~~I~~~~~dG~~~~~l~~~~~----~~p~glaiD~~~~~lYw~D~--~~~~I~~~~~dG   99 (109)
                      .|  .+.||++...  .......|++++++|...+..++..+    .......+.+..+.+..+-.  ....+...+.++
T Consensus       372 ~d--~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~~  449 (740)
T 4a5s_A          372 LT--SDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVN  449 (740)
T ss_dssp             EC--SSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTT
T ss_pred             Ee--CCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEECCC
Confidence            55  7899998765  22235799999999876553333221    23455677777765443332  345777777765


Q ss_pred             CCeEEEE
Q psy959          100 NNREALY  106 (109)
Q Consensus       100 ~~~~~l~  106 (109)
                      .....++
T Consensus       450 ~~~~~~l  456 (740)
T 4a5s_A          450 DKGLRVL  456 (740)
T ss_dssp             TEEEEEE
T ss_pred             CcEEEEe
Confidence            5444443

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=81.96  E-value=14  Score=27.61  Aligned_cols=74  Identities=11%  Similarity=0.010  Sum_probs=50.0

Q ss_pred             EEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCCcEEEEeCCCCCceeEEEecCCCeEEEEeC---CCCeEEEEeCCCCC
Q psy959           26 FMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDA---VREKIERSDLAGNN  101 (109)
Q Consensus        26 iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glaiD~~~~~lYw~D~---~~~~I~~~~~dG~~  101 (109)
                      ++++|..+.||++..........|++.+.++...+.+..  ......+++.+..+.|..+-.   ....|...+.++..
T Consensus       361 ~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~  437 (706)
T 2z3z_A          361 AGFDPKGTRLYFESTEASPLERHFYCIDIKGGKTKDLTP--ESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS  437 (706)
T ss_dssp             EEECTTSSEEEEEESSSCTTCBEEEEEETTCCCCEESCC--SSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred             eEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCceeccC--CCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence            688997778998876521112589999887665554432  334667888888887766533   23578888888765

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=81.69  E-value=11  Score=26.40  Aligned_cols=81  Identities=11%  Similarity=0.052  Sum_probs=52.7

Q ss_pred             CcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCCcEEEEe--CCCCCceeEEEecCCCeEEEEeCCCCeEEEEeCCC
Q psy959           22 GRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIE--KDLSQPSGLAIDFDDEMLYWTDAVREKIERSDLAG   99 (109)
Q Consensus        22 ~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~~~~l~~--~~~~~p~glaiD~~~~~lYw~D~~~~~I~~~~~dG   99 (109)
                      ...+|+.+|..+.+.-+-..    .+.|..-+++......+..  ..-....+|++.|.++.++.+-...+.|...++.+
T Consensus       121 ~V~~l~~~P~~~~~lasGs~----dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~  196 (435)
T 4e54_B          121 RATSLAWHPTHPSTVAVGSK----GGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKG  196 (435)
T ss_dssp             CEEEEEECSSCTTCEEEEET----TSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTS
T ss_pred             CEEEEEEeCCCCCEEEEEeC----CCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccC
Confidence            35678999877766655544    5788888887555444433  22346788999886665555555556777777777


Q ss_pred             CCeEEEE
Q psy959          100 NNREALY  106 (109)
Q Consensus       100 ~~~~~l~  106 (109)
                      ...+++.
T Consensus       197 ~~~~~~~  203 (435)
T 4e54_B          197 NILRVFA  203 (435)
T ss_dssp             CEEEEEE
T ss_pred             CceeEEe
Confidence            6555544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	109
d1npea_	263	b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId	9e-09
d1npea_	263	b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId	2e-06
d1npea_	263	b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId	3e-06
d1npea_	263	b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId	3e-05
d1npea_	263	b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId	5e-04
d1ijqa1	266	b.68.5.1 (A:377-642) Low density lipoprotein (LDL)	2e-06
d1ijqa1	266	b.68.5.1 (A:377-642) Low density lipoprotein (LDL)	2e-06
d1ijqa1	266	b.68.5.1 (A:377-642) Low density lipoprotein (LDL)	6e-06
d1ijqa1	266	b.68.5.1 (A:377-642) Low density lipoprotein (LDL)	2e-05
d1rwia_	260	b.68.9.1 (A:) Serine/threonine-protein kinase PknD	2e-04
d1q7fa_	279	b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (D	0.002
d2dg1a1	319	b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus	0.004

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} Length = 263

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.1 bits (116), Expect = 9e-09
 Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 2/72 (2%)

Query: 35  LYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIER 94
           LY+TDW R     KI  + M G+ ++++ + +L  P+GL  D     L W DA   + E 
Sbjct: 136 LYWTDWNR--DNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAEC 193

Query: 95  SDLAGNNREALY 106
            + A   R  + 
Sbjct: 194 LNPAQPGRRKVL 205

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} Length = 263

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.2 bits (98), Expect = 2e-06
 Identities = 14/73 (19%), Positives = 26/73 (35%), Gaps = 7/73 (9%)

Query: 35  LYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIER 94
           L + D G      +      A   ++ ++E  L  P  +      + LY+TD     +  
Sbjct: 181 LCWVDAGT----HRAECLNPAQPGRRKVLE-GLQYPFAVTSY--GKNLYYTDWKTNSVIA 233

Query: 95  SDLAGNNREALYL 107
            DLA +     + 
Sbjct: 234 MDLAISKEMDTFH 246

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} Length = 263

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.8 bits (97), Expect = 3e-06
 Identities = 17/53 (32%), Positives = 23/53 (43%)

Query: 51  RTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIERSDLAGNNRE 103
           R TM  +  K  +        GLA D  D+++YWTD     I R+ L G    
Sbjct: 19  RNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPT 71

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} Length = 263

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.1 bits (90), Expect = 3e-05
 Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 4/74 (5%)

Query: 33  RTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKI 92
           + +Y+TD         I R ++ G     II +DL  P G+A+D     ++WTD+  ++I
Sbjct: 48  KVVYWTDISE----PSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRI 103

Query: 93  ERSDLAGNNREALY 106
           E + + G  R  L+
Sbjct: 104 EVAKMDGTQRRVLF 117

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} Length = 263

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.2 bits (80), Expect = 5e-04
 Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 6/72 (8%)

Query: 33  RTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVRE-- 90
           RT+++TD        +I    M G+ ++V+ +  L  P G+  D     LYWTD  R+  
Sbjct: 91  RTIFWTDSQL----DRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNP 146

Query: 91  KIERSDLAGNNR 102
           KIE S + G NR
Sbjct: 147 KIETSHMDGTNR 158

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (98), Expect = 2e-06
 Identities = 18/69 (26%), Positives = 31/69 (44%)

Query: 33  RTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKI 92
             +Y++D  +       L      S    +I +D+  P GLA+D+    +YWTD+V   +
Sbjct: 42  NRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTV 101

Query: 93  ERSDLAGNN 101
             +D  G  
Sbjct: 102 SVADTKGVK 110

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (98), Expect = 2e-06
 Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 3/79 (3%)

Query: 31  RLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVRE 90
               +Y+TDWG      KI +  + G     ++ +++  P+G+ +D     LYW D+   
Sbjct: 130 VHGFMYWTDWGT---PAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLH 186

Query: 91  KIERSDLAGNNREALYLNK 109
            I   D+ G NR+ +  ++
Sbjct: 187 SISSIDVNGGNRKTILEDE 205

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (95), Expect = 6e-06
 Identities = 16/75 (21%), Positives = 32/75 (42%), Gaps = 5/75 (6%)

Query: 35  LYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIER 94
           LY+ D         I    + G  +K I+E +       ++   ++ ++WTD + E I  
Sbjct: 178 LYWVDSKLH----SISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFS 233

Query: 95  SDLA-GNNREALYLN 108
           ++   G++   L  N
Sbjct: 234 ANRLTGSDVNLLAEN 248

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (91), Expect = 2e-05
 Identities = 11/61 (18%), Positives = 23/61 (37%), Gaps = 1/61 (1%)

Query: 43  FGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIERSDLAGNNR 102
           F    ++ + T+  S    +I  +L     L  +     +YW+D  +  I  + L   + 
Sbjct: 6   FTNRHEVRKMTLDRSEYTSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHG 64

Query: 103 E 103
            
Sbjct: 65  V 65

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} Length = 260

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 37.1 bits (84), Expect = 2e-04
 Identities = 8/63 (12%), Positives = 25/63 (39%), Gaps = 1/63 (1%)

Query: 40  WGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIERSDLAG 99
           +       ++++     +   V+    L+ P  +A+D D   +Y  D   +++ +     
Sbjct: 196 YVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRT-VYVADRGNDRVVKLTSLE 254

Query: 100 NNR 102
           ++ 
Sbjct: 255 HHH 257

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 279

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 34.2 bits (77), Expect = 0.002
 Identities = 15/71 (21%), Positives = 29/71 (40%), Gaps = 20/71 (28%)

Query: 31  RLRTLYYTDWGRFGTA-GKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVR 89
           R R +Y+  +G FG   G+                   ++PSG+A++  ++ +   D   
Sbjct: 3   RQRMIYHCKFGEFGVMEGQ------------------FTEPSGVAVNAQND-IIVADTNN 43

Query: 90  EKIERSDLAGN 100
            +I+  D  G 
Sbjct: 44  HRIQIFDKEGR 54

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} Length = 319

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

 Score = 33.1 bits (74), Expect = 0.004
 Identities = 8/51 (15%), Positives = 14/51 (27%), Gaps = 4/51 (7%)

Query: 34 TLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYW 84
           L+  D       G I +        K       + P+ + I  D  +   
Sbjct: 52 QLFLLDVF----EGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVC 98

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	109
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	99.92
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	99.91
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	99.87
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	99.86
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.35
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.27
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.03
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.83
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.79
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.68
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.68
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.54
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.42
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.21
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.19
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.03
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	97.99
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	97.71
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	97.62
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	97.62
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	97.18
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	97.11
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	96.97
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	96.96
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	96.68
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	96.21
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	95.55
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	94.76
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	94.42
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	94.24
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	93.89
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	93.88
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	92.84
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	91.13
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	90.99
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	89.42
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	88.7
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	88.08
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	87.6
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	86.83
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	86.13
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	85.88
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	85.84
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	84.85
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	84.76
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	80.88
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	80.41

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=6.8e-24  Score=145.92  Aligned_cols=103  Identities=23%  Similarity=0.431  Sum_probs=94.4

Q ss_pred             eeecCCCCCccEEEe-cCCCCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCCcEEEEeCCCCCceeEEEecCCCe
Q psy959            3 STDKDLLKTHRSLLL-QAIPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEM   81 (109)
Q Consensus         3 ~~~~~l~G~~~~~li-~~l~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glaiD~~~~~   81 (109)
                      +..++++|+.+++++ .++..|.+|++||..|+|||++++.   .++|+|++|||+++++++...+..|+||++|+.+++
T Consensus       101 I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~---~~~I~r~~~dGs~~~~l~~~~~~~p~gl~iD~~~~~  177 (266)
T d1ijqa1         101 VSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGT---PAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGR  177 (266)
T ss_dssp             EEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSS---SCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTE
T ss_pred             EEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCC---CcceeEeccCCCceecccccccceeeEEEeeccccE
Confidence            456789999988877 6789999999999999999999875   689999999999999999888999999999999999


Q ss_pred             EEEEeCCCCeEEEEeCCCCCeEEEEeC
Q psy959           82 LYWTDAVREKIERSDLAGNNREALYLN  108 (109)
Q Consensus        82 lYw~D~~~~~I~~~~~dG~~~~~l~~~  108 (109)
                      |||+|...++|+++++||+++++++..
T Consensus       178 lYw~d~~~~~I~~~~~dG~~~~~~~~~  204 (266)
T d1ijqa1         178 LYWVDSKLHSISSIDVNGGNRKTILED  204 (266)
T ss_dssp             EEEEETTTTEEEEEETTSCSCEEEEEC
T ss_pred             EEEecCCcCEEEEEECCCCCEEEEEeC
Confidence            999999999999999999999888753

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=1.3e-23  Score=144.49  Aligned_cols=104  Identities=25%  Similarity=0.393  Sum_probs=94.7

Q ss_pred             eeecCCCCCccEEEe-cCCCCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCCcEEEEeCCCCCceeEEEecCCCe
Q psy959            3 STDKDLLKTHRSLLL-QAIPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEM   81 (109)
Q Consensus         3 ~~~~~l~G~~~~~li-~~l~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glaiD~~~~~   81 (109)
                      +..++++|+.+++++ .++..|.+|++||..|+|||++++..  .++|+|++|||+.++.++..++..|.|||+|+.+++
T Consensus       103 I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~--~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~  180 (263)
T d1npea_         103 IEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRD--NPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQ  180 (263)
T ss_dssp             EEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSS--SCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTE
T ss_pred             EEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCC--CcEEEEecCCCCCceeeeeecccccceEEEeecCcE
Confidence            456789999999988 57899999999999999999998742  468999999999999999888999999999999999


Q ss_pred             EEEEeCCCCeEEEEeCCCCCeEEEEeC
Q psy959           82 LYWTDAVREKIERSDLAGNNREALYLN  108 (109)
Q Consensus        82 lYw~D~~~~~I~~~~~dG~~~~~l~~~  108 (109)
                      |||+|.+.++|++++++|.++++++..
T Consensus       181 lYw~d~~~~~I~~~~~~g~~~~~v~~~  207 (263)
T d1npea_         181 LCWVDAGTHRAECLNPAQPGRRKVLEG  207 (263)
T ss_dssp             EEEEETTTTEEEEEETTEEEEEEEEEC
T ss_pred             EEEEeCCCCEEEEEECCCCCeEEEECC
Confidence            999999999999999999999988753

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.87  E-value=1.8e-21  Score=133.66  Aligned_cols=101  Identities=27%  Similarity=0.395  Sum_probs=92.0

Q ss_pred             eecCCCCCccEEEe-cCCCCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCCcEEEEeCCCCCceeEEEecCCCeE
Q psy959            4 TDKDLLKTHRSLLL-QAIPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEML   82 (109)
Q Consensus         4 ~~~~l~G~~~~~li-~~l~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glaiD~~~~~l   82 (109)
                      -.++++|+.+++++ .++..|.+||+|+.+++|||+|..    ..+|+++++||+.++++....+..|.+|++||..+.|
T Consensus        61 ~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~----~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~l  136 (263)
T d1npea_          61 GRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQ----LDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNL  136 (263)
T ss_dssp             EEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETT----TTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEE
T ss_pred             EEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccC----CCEEEEEecCCceEEEEecccccCCcEEEEecccCcE
Confidence            34678999998888 678999999999999999999987    6899999999999999988888999999999999999


Q ss_pred             EEEeCC--CCeEEEEeCCCCCeEEEEeC
Q psy959           83 YWTDAV--REKIERSDLAGNNREALYLN  108 (109)
Q Consensus        83 Yw~D~~--~~~I~~~~~dG~~~~~l~~~  108 (109)
                      ||++.+  ..+|+++++||+++++++.+
T Consensus       137 y~t~~~~~~~~I~r~~~dG~~~~~i~~~  164 (263)
T d1npea_         137 YWTDWNRDNPKIETSHMDGTNRRILAQD  164 (263)
T ss_dssp             EEEECCSSSCEEEEEETTSCCCEEEECT
T ss_pred             EEeecCCCCcEEEEecCCCCCceeeeee
Confidence            999986  45799999999999998864

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=9.3e-21  Score=130.08  Aligned_cols=99  Identities=20%  Similarity=0.323  Sum_probs=85.5

Q ss_pred             cCCCCC----ccEEEe-cCCCCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCCcEEEEeCCCCCceeEEEecCCC
Q psy959            6 KDLLKT----HRSLLL-QAIPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDE   80 (109)
Q Consensus         6 ~~l~G~----~~~~li-~~l~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glaiD~~~~   80 (109)
                      ++++|.    ..++++ .++..|.+||+||.+++|||+|..    ..+|++++++|..+..++...+.+|.+|++|+..+
T Consensus        57 ~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~----~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g  132 (266)
T d1ijqa1          57 TQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSV----LGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHG  132 (266)
T ss_dssp             EEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETT----TTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTT
T ss_pred             EEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEecC----CCEEEeEecCCceEEEEEcCCCCCcceEEEEcccC
Confidence            455553    345555 678999999999999999999987    68999999999999999888899999999999999


Q ss_pred             eEEEEeCC-CCeEEEEeCCCCCeEEEEeC
Q psy959           81 MLYWTDAV-REKIERSDLAGNNREALYLN  108 (109)
Q Consensus        81 ~lYw~D~~-~~~I~~~~~dG~~~~~l~~~  108 (109)
                      .|||+|.+ ..+|+++++||+++++++++
T Consensus       133 ~ly~~~~~~~~~I~r~~~dGs~~~~l~~~  161 (266)
T d1ijqa1         133 FMYWTDWGTPAKIKKGGLNGVDIYSLVTE  161 (266)
T ss_dssp             EEEEEECSSSCEEEEEETTSCCEEEEECS
T ss_pred             eEEEeccCCCcceeEeccCCCceeccccc
Confidence            99999986 46999999999999999864

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.35  E-value=2.8e-12  Score=86.18  Aligned_cols=92  Identities=14%  Similarity=0.215  Sum_probs=77.1

Q ss_pred             eecCCCCCccEEEe-cCCCCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCCcEEEEeCCCCCceeEEEecCCCeE
Q psy959            4 TDKDLLKTHRSLLL-QAIPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEML   82 (109)
Q Consensus         4 ~~~~l~G~~~~~li-~~l~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glaiD~~~~~l   82 (109)
                      ...+.+|+.+.++. ..+..|.+|++|+ .|+||++|..    ..+|.+...++.....+....+.+|.+|++|+. +.|
T Consensus       164 ~~~d~~~~~~~~~~~~~~~~p~gi~~d~-~g~l~vsd~~----~~~i~~~~~~~~~~~~~~~~~~~~P~~i~~d~~-g~l  237 (260)
T d1rwia_         164 VKLEAESNNQVVLPFTDITAPWGIAVDE-AGTVYVTEHN----TNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSD-RTV  237 (260)
T ss_dssp             EEECTTTCCEEECCCSSCCSEEEEEECT-TCCEEEEETT----TTEEEEECTTCSCCEECCCCSCCCEEEEEECTT-CCE
T ss_pred             cccccccceeeeeeccccCCCccceeee-eeeeeeeecC----CCEEEEEeCCCCeEEEEccCCCCCeEEEEEeCC-CCE
Confidence            34567777776665 6789999999999 7899999998    689999999988877776667889999999965 689


Q ss_pred             EEEeCCCCeEEEEeCCCCC
Q psy959           83 YWTDAVREKIERSDLAGNN  101 (109)
Q Consensus        83 Yw~D~~~~~I~~~~~dG~~  101 (109)
                      |++|+..++|.+.+..|..
T Consensus       238 ~vad~~~~rI~~i~~~~~~  256 (260)
T d1rwia_         238 YVADRGNDRVVKLTSLEHH  256 (260)
T ss_dssp             EEEEGGGTEEEEECCCGGG
T ss_pred             EEEECCCCEEEEEeCCCCc
Confidence            9999999999998876643

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.27  E-value=3.8e-11  Score=80.50  Aligned_cols=93  Identities=14%  Similarity=0.185  Sum_probs=77.0

Q ss_pred             CCCCCccEEEe-cCCCCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCCcEEEEeCCCCCceeEEEecCCCeEEEE
Q psy959            7 DLLKTHRSLLL-QAIPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWT   85 (109)
Q Consensus         7 ~l~G~~~~~li-~~l~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glaiD~~~~~lYw~   85 (109)
                      +.+|....... .++..|.+|++|+ .|++|+++..    ..+|.+.+.+|.....+....+..|.||++|+. +.|||+
T Consensus       125 ~~~~~~~~~~~~~~~~~p~~i~~~~-~g~~~v~~~~----~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~-g~l~vs  198 (260)
T d1rwia_         125 AAGSKTQTVLPFTGLNDPDGVAVDN-SGNVYVTDTD----NNRVVKLEAESNNQVVLPFTDITAPWGIAVDEA-GTVYVT  198 (260)
T ss_dssp             CTTCSSCEECCCCSCCSCCEEEECT-TCCEEEEEGG----GTEEEEECTTTCCEEECCCSSCCSEEEEEECTT-CCEEEE
T ss_pred             ccccceeeeeeecccCCcceeeecC-CCCEeeeccc----cccccccccccceeeeeeccccCCCccceeeee-eeeeee
Confidence            44455444433 5689999999999 7899999988    689999999999888776677899999999964 689999


Q ss_pred             eCCCCeEEEEeCCCCCeEEE
Q psy959           86 DAVREKIERSDLAGNNREAL  105 (109)
Q Consensus        86 D~~~~~I~~~~~dG~~~~~l  105 (109)
                      |...++|.+...+|....++
T Consensus       199 d~~~~~i~~~~~~~~~~~~~  218 (260)
T d1rwia_         199 EHNTNQVVKLLAGSTTSTVL  218 (260)
T ss_dssp             ETTTTEEEEECTTCSCCEEC
T ss_pred             ecCCCEEEEEeCCCCeEEEE
Confidence            99999999999988766554

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.03  E-value=1.5e-09  Score=74.71  Aligned_cols=95  Identities=14%  Similarity=0.085  Sum_probs=73.6

Q ss_pred             cCCCCCccEEEecCCCCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCC--CCcEEE-----E-eCCCCCceeEEEec
Q psy959            6 KDLLKTHRSLLLQAIPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAG--SLKKVI-----I-EKDLSQPSGLAIDF   77 (109)
Q Consensus         6 ~~l~G~~~~~li~~l~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG--~~~~~l-----~-~~~~~~p~glaiD~   77 (109)
                      .+.+|+..+.+..++..|+||++++..+.||++|..    ..+|.+..+++  ......     . ......|.||++|.
T Consensus       162 ~~~dg~~~~~~~~~~~~pnGia~s~dg~~lyvad~~----~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~  237 (319)
T d2dg1a1         162 VSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETT----ANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDS  237 (319)
T ss_dssp             ECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGG----GTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBT
T ss_pred             EecccceeEEEeeccceeeeeeeccccceEEEeccc----CCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcC
Confidence            345677667777889999999999978889999987    68999998864  332211     1 12345699999995


Q ss_pred             CCCeEEEEeCCCCeEEEEeCCCCCeEEE
Q psy959           78 DDEMLYWTDAVREKIERSDLAGNNREAL  105 (109)
Q Consensus        78 ~~~~lYw~D~~~~~I~~~~~dG~~~~~l  105 (109)
                       .++||+++++.++|.+.+-+|.....+
T Consensus       238 -~G~l~Va~~~~g~V~~~~p~G~~l~~i  264 (319)
T d2dg1a1         238 -DDNLYVAMYGQGRVLVFNKRGYPIGQI  264 (319)
T ss_dssp             -TCCEEEEEETTTEEEEECTTSCEEEEE
T ss_pred             -CCCEEEEEcCCCEEEEECCCCcEEEEE
Confidence             568999999999999999999765544

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.83  E-value=2.6e-08  Score=68.39  Aligned_cols=92  Identities=15%  Similarity=0.257  Sum_probs=70.0

Q ss_pred             CCCCCccEEEec---CCCCcceEEeeCCCCeEEEEecCCCC--CCCeEEEEEcCCCCcEEEEeCCCCCceeEEEecCCCe
Q psy959            7 DLLKTHRSLLLQ---AIPGRRHFMPPIRLRTLYYTDWGRFG--TAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEM   81 (109)
Q Consensus         7 ~l~G~~~~~li~---~l~~p~~iavd~~~g~lywsd~~~~~--~~~~I~~~~~dG~~~~~l~~~~~~~p~glaiD~~~~~   81 (109)
                      +..+.....++.   ....|.++++|+ .|.+|++|.....  ....+.+.+.||...+.+.. .+..|+||++++..+.
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~nd~~~d~-~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~-~~~~pnGia~s~dg~~  190 (319)
T d2dg1a1         113 TENGDNLQDIIEDLSTAYCIDDMVFDS-KGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQ-NISVANGIALSTDEKV  190 (319)
T ss_dssp             CTTSCSCEEEECSSSSCCCEEEEEECT-TSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEE-EESSEEEEEECTTSSE
T ss_pred             cCCCceeeeeccCCCcccCCcceeEEe-ccceeecccccccccCcceeEEEecccceeEEEee-ccceeeeeeeccccce
Confidence            334444444442   346788999999 8899999965311  24569999999987666554 5789999999999999


Q ss_pred             EEEEeCCCCeEEEEeCCCC
Q psy959           82 LYWTDAVREKIERSDLAGN  100 (109)
Q Consensus        82 lYw~D~~~~~I~~~~~dG~  100 (109)
                      ||++|...++|.+.++++.
T Consensus       191 lyvad~~~~~I~~~d~~~~  209 (319)
T d2dg1a1         191 LWVTETTANRLHRIALEDD  209 (319)
T ss_dssp             EEEEEGGGTEEEEEEECTT
T ss_pred             EEEecccCCceEEEEEcCC
Confidence            9999999999999987643

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.79  E-value=8.8e-08  Score=64.24  Aligned_cols=95  Identities=13%  Similarity=0.004  Sum_probs=73.1

Q ss_pred             cCCCCCccEEEe--cCCCCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCCcEEEEe-CCCCCceeEEEecCCCeE
Q psy959            6 KDLLKTHRSLLL--QAIPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIE-KDLSQPSGLAIDFDDEML   82 (109)
Q Consensus         6 ~~l~G~~~~~li--~~l~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~~~~l~~-~~~~~p~glaiD~~~~~l   82 (109)
                      .+.+|+....+-  ..+..|.++++|+ .|.+|++|..    ..+|++.+.+|.....+-. ..+..|.||++|+.. .|
T Consensus       140 ~~~~g~~~~~~g~~~~~~~~~~i~~d~-~g~i~v~d~~----~~~V~~~d~~G~~~~~~g~~g~~~~P~giavD~~G-~i  213 (279)
T d1q7fa_         140 FDQNGNVLHKFGCSKHLEFPNGVVVND-KQEIFISDNR----AHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNG-EI  213 (279)
T ss_dssp             ECTTSCEEEEEECTTTCSSEEEEEECS-SSEEEEEEGG----GTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTC-CE
T ss_pred             eccCCceeecccccccccccceeeecc-ceeEEeeecc----ccceeeeecCCceeeeecccccccCCcccccccCC-eE
Confidence            344555433331  3578899999998 8899999998    7999999999987666543 247789999999865 69


Q ss_pred             EEEeCC-CCeEEEEeCCCCCeEEEE
Q psy959           83 YWTDAV-REKIERSDLAGNNREALY  106 (109)
Q Consensus        83 Yw~D~~-~~~I~~~~~dG~~~~~l~  106 (109)
                      |.+|.. .++|...+.+|+-..++.
T Consensus       214 ~Vad~~~~~~v~~f~~~G~~~~~~~  238 (279)
T d1q7fa_         214 LIADNHNNFNLTIFTQDGQLISALE  238 (279)
T ss_dssp             EEEECSSSCEEEEECTTSCEEEEEE
T ss_pred             EEEECCCCcEEEEECCCCCEEEEEe
Confidence            999985 568999999998766653

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.68  E-value=7.3e-08  Score=66.11  Aligned_cols=77  Identities=17%  Similarity=0.227  Sum_probs=64.7

Q ss_pred             CCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCCcEEEEeCCCCCceeEEEecCCCeEEEEeCCCCeEEEEeCCCC
Q psy959           21 PGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIERSDLAGN  100 (109)
Q Consensus        21 ~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glaiD~~~~~lYw~D~~~~~I~~~~~dG~  100 (109)
                      ..|.|+++|. .|+||.++++    ..+|.+.+.+|......+......|.++++.+..+.||.++...++|.++++.-.
T Consensus       226 ~~pdGiavD~-~GnlyVa~~~----~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~~  300 (314)
T d1pjxa_         226 GGADGMDFDE-DNNLLVANWG----SSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN  300 (314)
T ss_dssp             CEEEEEEEBT-TCCEEEEEET----TTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred             ccceeeEEec-CCcEEEEEcC----CCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCCC
Confidence            4689999998 8999999998    6899999998766544445456789999999888889999999999999998765


Q ss_pred             Ce
Q psy959          101 NR  102 (109)
Q Consensus       101 ~~  102 (109)
                      .+
T Consensus       301 G~  302 (314)
T d1pjxa_         301 GK  302 (314)
T ss_dssp             BC
T ss_pred             Ch
Confidence            54

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.68  E-value=2.5e-07  Score=61.94  Aligned_cols=95  Identities=8%  Similarity=0.071  Sum_probs=75.2

Q ss_pred             ecCCCCCccEEEe-cCCCCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCCcEEEEe-CCCCCceeEEEecCCCeE
Q psy959            5 DKDLLKTHRSLLL-QAIPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIE-KDLSQPSGLAIDFDDEML   82 (109)
Q Consensus         5 ~~~l~G~~~~~li-~~l~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~~~~l~~-~~~~~p~glaiD~~~~~l   82 (109)
                      ..+.+|.....+- ..+..|.++++|+ .|.+|+++..    ..++.+.+.+|+....+-. ..+..|.++++|+ ++.+
T Consensus        97 ~~~~~g~~~~~~~~~~~~~p~~~avd~-~G~i~v~~~~----~~~~~~~~~~g~~~~~~g~~~~~~~~~~i~~d~-~g~i  170 (279)
T d1q7fa_          97 IYNQYGQFVRKFGATILQHPRGVTVDN-KGRIIVVECK----VMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVND-KQEI  170 (279)
T ss_dssp             EECTTSCEEEEECTTTCSCEEEEEECT-TSCEEEEETT----TTEEEEECTTSCEEEEEECTTTCSSEEEEEECS-SSEE
T ss_pred             cccccccceeecCCCcccccceecccc-CCcEEEEeec----cceeeEeccCCceeecccccccccccceeeecc-ceeE
Confidence            3456666555543 5678999999998 8899999987    6899999999987665533 4578999999995 5689


Q ss_pred             EEEeCCCCeEEEEeCCCCCeEEE
Q psy959           83 YWTDAVREKIERSDLAGNNREAL  105 (109)
Q Consensus        83 Yw~D~~~~~I~~~~~dG~~~~~l  105 (109)
                      |++|...++|...+.+|+....+
T Consensus       171 ~v~d~~~~~V~~~d~~G~~~~~~  193 (279)
T d1q7fa_         171 FISDNRAHCVKVFNYEGQYLRQI  193 (279)
T ss_dssp             EEEEGGGTEEEEEETTCCEEEEE
T ss_pred             EeeeccccceeeeecCCceeeee
Confidence            99999999999999999765544

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.54  E-value=4.7e-07  Score=61.93  Aligned_cols=90  Identities=22%  Similarity=0.181  Sum_probs=68.9

Q ss_pred             cEEEecCCCCcceEEeeCCCCeEEEEecCCC---CCCCeEEEEEcCCCCcEEEEeC----CCCCceeEEEecCCCeEEEE
Q psy959           13 RSLLLQAIPGRRHFMPPIRLRTLYYTDWGRF---GTAGKILRTTMAGSLKKVIIEK----DLSQPSGLAIDFDDEMLYWT   85 (109)
Q Consensus        13 ~~~li~~l~~p~~iavd~~~g~lywsd~~~~---~~~~~I~~~~~dG~~~~~l~~~----~~~~p~glaiD~~~~~lYw~   85 (109)
                      -+.+.+++..|.|+++|+ .|+||+++....   ....+|.+.+.++.....+...    ....|.||++|+..++||.+
T Consensus        10 ~~~v~~~~~g~EGpa~d~-dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~va   88 (314)
T d1pjxa_          10 FTKVTEDIPGAEGPVFDK-NGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVA   88 (314)
T ss_dssp             CEEEECCCTTCEEEEECT-TSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEE
T ss_pred             eEEeecCCCCCeEeEEeC-CCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEE
Confidence            345568999999999998 899999986521   0136799999988776665432    13469999999998899999


Q ss_pred             eCCCCeEEEEeCCCCCeEE
Q psy959           86 DAVREKIERSDLAGNNREA  104 (109)
Q Consensus        86 D~~~~~I~~~~~dG~~~~~  104 (109)
                      |.. ..|.+.+.+|....+
T Consensus        89 d~~-~~i~~~~~~g~~~~~  106 (314)
T d1pjxa_          89 DMR-LGLLVVQTDGTFEEI  106 (314)
T ss_dssp             ETT-TEEEEEETTSCEEEC
T ss_pred             ECC-CeEEEEeCCCcEEEE
Confidence            874 578999999876554

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.42  E-value=2.2e-06  Score=57.98  Aligned_cols=86  Identities=16%  Similarity=0.169  Sum_probs=67.9

Q ss_pred             EEecCCCCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCC------cEEEEe--CCCCCceeEEEecCCCeEEEEe
Q psy959           15 LLLQAIPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSL------KKVIIE--KDLSQPSGLAIDFDDEMLYWTD   86 (109)
Q Consensus        15 ~li~~l~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~------~~~l~~--~~~~~p~glaiD~~~~~lYw~D   86 (109)
                      .+..++..|++++.++....+||+|..    ..+|.+.++|+..      +..+..  .....|.|+++|. .+.||.+.
T Consensus       142 ~~~~~~~~~Ng~~~s~d~~~l~~~dt~----~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~-~GnlWva~  216 (295)
T d2ghsa1         142 KLFADISIPNSICFSPDGTTGYFVDTK----VNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDA-EGHIWNAR  216 (295)
T ss_dssp             EEEEEESSEEEEEECTTSCEEEEEETT----TCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECT-TSCEEEEE
T ss_pred             EEeeccCCcceeeecCCCceEEEeecc----cceeeEeeecccccccccceEEEeccCcccccccceEEcC-CCCEEeee
Confidence            444678899999999988899999997    6999999987542      334443  2345799999995 56799999


Q ss_pred             CCCCeEEEEeCCCCCeEEE
Q psy959           87 AVREKIERSDLAGNNREAL  105 (109)
Q Consensus        87 ~~~~~I~~~~~dG~~~~~l  105 (109)
                      +..++|.+.+-+|+....+
T Consensus       217 ~~~g~V~~~dp~G~~~~~i  235 (295)
T d2ghsa1         217 WGEGAVDRYDTDGNHIARY  235 (295)
T ss_dssp             ETTTEEEEECTTCCEEEEE
T ss_pred             eCCCceEEecCCCcEeeEe
Confidence            9899999999999766554

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.21  E-value=3.3e-06  Score=56.84  Aligned_cols=70  Identities=20%  Similarity=0.119  Sum_probs=55.2

Q ss_pred             CcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCCcEEEEeCCCCCceeEEEecCCCeEEEEeCCCCeEEEEeCCC
Q psy959           22 GRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIERSDLAG   99 (109)
Q Consensus        22 ~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glaiD~~~~~lYw~D~~~~~I~~~~~dG   99 (109)
                      .|.++|++| .|+||++|..    .++|.+.+.+|.... +. .....|.+|++++. ++||.++...+.+.....++
T Consensus        29 ~~e~iAv~p-dG~l~vt~~~----~~~I~~i~p~g~~~~-~~-~~~~~~~gla~~~d-G~l~v~~~~~~~~~~~~~~~   98 (302)
T d2p4oa1          29 FLENLASAP-DGTIFVTNHE----VGEIVSITPDGNQQI-HA-TVEGKVSGLAFTSN-GDLVATGWNADSIPVVSLVK   98 (302)
T ss_dssp             CEEEEEECT-TSCEEEEETT----TTEEEEECTTCCEEE-EE-ECSSEEEEEEECTT-SCEEEEEECTTSCEEEEEEC
T ss_pred             CcCCEEECC-CCCEEEEeCC----CCEEEEEeCCCCEEE-EE-cCCCCcceEEEcCC-CCeEEEecCCceEEEEEecc
Confidence            478999999 8999999998    689999999987443 33 34568999999975 56999988777666665543

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.19  E-value=1.3e-05  Score=54.14  Aligned_cols=90  Identities=20%  Similarity=0.235  Sum_probs=63.1

Q ss_pred             CCCCCccEEEec-----CCCCcceEEeeCCCCeEEEEecCCCC--CCCeEEEEEcCCCCcEEEEeCCCCCceeEEEecCC
Q psy959            7 DLLKTHRSLLLQ-----AIPGRRHFMPPIRLRTLYYTDWGRFG--TAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDD   79 (109)
Q Consensus         7 ~l~G~~~~~li~-----~l~~p~~iavd~~~g~lywsd~~~~~--~~~~I~~~~~dG~~~~~l~~~~~~~p~glaiD~~~   79 (109)
                      ++++...+.+..     ....|+.+++|+ .|.+|+++.....  ....+++.. +|+..++.  .++..|+|+++++..
T Consensus        84 d~~tg~~~~l~~~~~~~~~~~~nd~~vd~-~G~iw~~~~~~~~~~~~g~l~~~~-~g~~~~~~--~~~~~~Ng~~~s~d~  159 (295)
T d2ghsa1          84 DTATGVLTLHAELESDLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIYHVA-KGKVTKLF--ADISIPNSICFSPDG  159 (295)
T ss_dssp             ETTTCCEEEEECSSTTCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEEEEE-TTEEEEEE--EEESSEEEEEECTTS
T ss_pred             ecccceeeEEeeeecCCCcccceeeEECC-CCCEEEEeccccccccceeEeeec-CCcEEEEe--eccCCcceeeecCCC
Confidence            444444445542     124578899999 8899999865321  134555543 45433332  457889999999999


Q ss_pred             CeEEEEeCCCCeEEEEeCCCC
Q psy959           80 EMLYWTDAVREKIERSDLAGN  100 (109)
Q Consensus        80 ~~lYw~D~~~~~I~~~~~dG~  100 (109)
                      +.|||+|...++|.+.++|+.
T Consensus       160 ~~l~~~dt~~~~I~~~~~d~~  180 (295)
T d2ghsa1         160 TTGYFVDTKVNRLMRVPLDAR  180 (295)
T ss_dssp             CEEEEEETTTCEEEEEEBCTT
T ss_pred             ceEEEeecccceeeEeeeccc
Confidence            999999999999999998864

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.03  E-value=0.00011  Score=49.11  Aligned_cols=93  Identities=13%  Similarity=0.047  Sum_probs=66.1

Q ss_pred             CCCCCccEEEecCCCCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCC---CCcEEEEeCCCCCceeEEEecCCCeEE
Q psy959            7 DLLKTHRSLLLQAIPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAG---SLKKVIIEKDLSQPSGLAIDFDDEMLY   83 (109)
Q Consensus         7 ~l~G~~~~~li~~l~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG---~~~~~l~~~~~~~p~glaiD~~~~~lY   83 (109)
                      +.+|+ .+.+...-..|.++++++ .|.+|.++..    ...+.+...++   .............|+++++|+ .+++|
T Consensus        55 ~p~g~-~~~~~~~~~~~~gla~~~-dG~l~v~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~-~g~~~  127 (302)
T d2p4oa1          55 TPDGN-QQIHATVEGKVSGLAFTS-NGDLVATGWN----ADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLS-DTQYL  127 (302)
T ss_dssp             CTTCC-EEEEEECSSEEEEEEECT-TSCEEEEEEC----TTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESS-SSEEE
T ss_pred             eCCCC-EEEEEcCCCCcceEEEcC-CCCeEEEecC----CceEEEEEecccccceeeccccCCccccceeEEcc-CCCEE
Confidence            44554 234445557899999999 8899999877    45666655543   333333334577899999985 46899


Q ss_pred             EEeCCCCeEEEEeCCCCCeEEEE
Q psy959           84 WTDAVREKIERSDLAGNNREALY  106 (109)
Q Consensus        84 w~D~~~~~I~~~~~dG~~~~~l~  106 (109)
                      .++.....|.+.+.++....+..
T Consensus       128 v~~~~~~~i~~~~~~~~~~~~~~  150 (302)
T d2p4oa1         128 TADSYRGAIWLIDVVQPSGSIWL  150 (302)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEE
T ss_pred             eeccccccceeeeccCCcceeEe
Confidence            99999999999998877655443

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=97.99  E-value=5.1e-05  Score=52.48  Aligned_cols=82  Identities=16%  Similarity=0.161  Sum_probs=64.1

Q ss_pred             CCCCcceEEeeCCCCeEEEEecCCCC-----------CCCeEEEEEcCCCCcEEEEeCCCCCceeEEEecCCCeEEEEeC
Q psy959           19 AIPGRRHFMPPIRLRTLYYTDWGRFG-----------TAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDA   87 (109)
Q Consensus        19 ~l~~p~~iavd~~~g~lywsd~~~~~-----------~~~~I~~~~~dG~~~~~l~~~~~~~p~glaiD~~~~~lYw~D~   87 (109)
                      .+..|+.|++.. .|.+|+|+.....           ..+.-.+...|+...+++. +++..|+||++++..+.||+++.
T Consensus       148 ~~~~pNDv~~~~-~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~~~~~-~~l~~pNGI~~s~d~~~lyVa~t  225 (340)
T d1v04a_         148 LLPSVNDIVAVG-PEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVVA-EGFDFANGINISPDGKYVYIAEL  225 (340)
T ss_dssp             TCSSEEEEEEEE-TTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCEEEEE-EEESSEEEEEECTTSSEEEEEEG
T ss_pred             cccCccceEEec-CCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCceEEEc-CCCCccceeEECCCCCEEEEEeC
Confidence            467899999988 8889999733110           1245566777877776655 46889999999999999999999


Q ss_pred             CCCeEEEEeCCCCCe
Q psy959           88 VREKIERSDLAGNNR  102 (109)
Q Consensus        88 ~~~~I~~~~~dG~~~  102 (109)
                      ...+|.+..+++.+.
T Consensus       226 ~~~~i~~y~~~~~~~  240 (340)
T d1v04a_         226 LAHKIHVYEKHANWT  240 (340)
T ss_dssp             GGTEEEEEEECTTSC
T ss_pred             CCCeEEEEEeCCCcc
Confidence            999999999887653

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=97.71  E-value=0.001  Score=43.21  Aligned_cols=79  Identities=9%  Similarity=0.030  Sum_probs=58.2

Q ss_pred             cCCCCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCC-cEEEE--eCCCCCceeEEEecCCCeEEEEeCCCCeEEE
Q psy959           18 QAIPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSL-KKVII--EKDLSQPSGLAIDFDDEMLYWTDAVREKIER   94 (109)
Q Consensus        18 ~~l~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~-~~~l~--~~~~~~p~glaiD~~~~~lYw~D~~~~~I~~   94 (109)
                      +.-..|.+|++.|...+||.+...    ...|....++... ...+.  ......|.+|++++.++.||.++.....|..
T Consensus        34 ~~~~~v~~la~spDG~~L~v~~~~----d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~  109 (333)
T d1ri6a_          34 DVPGQVQPMVVSPDKRYLYVGVRP----EFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSV  109 (333)
T ss_dssp             ECSSCCCCEEECTTSSEEEEEETT----TTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEE
T ss_pred             cCCCCEeEEEEeCCCCEEEEEECC----CCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceee
Confidence            344678999999987889998875    5788888876443 22222  2334679999999999999999987777766


Q ss_pred             EeCCCC
Q psy959           95 SDLAGN  100 (109)
Q Consensus        95 ~~~dG~  100 (109)
                      ...+..
T Consensus       110 ~~~~~~  115 (333)
T d1ri6a_         110 TRLEDG  115 (333)
T ss_dssp             EEEETT
T ss_pred             eccccc
Confidence            555544

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=97.62  E-value=0.00077  Score=46.19  Aligned_cols=77  Identities=16%  Similarity=0.100  Sum_probs=61.4

Q ss_pred             CCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCCcEEEEe-----CCCCCceeEEEecCCCeEEEEeCCCCeEEEE
Q psy959           21 PGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIE-----KDLSQPSGLAIDFDDEMLYWTDAVREKIERS   95 (109)
Q Consensus        21 ~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~~~~l~~-----~~~~~p~glaiD~~~~~lYw~D~~~~~I~~~   95 (109)
                      .+|++++++|..+++|.+|.+    ..+|.+...+.........     ..-..|+++++++..+++|.+......|...
T Consensus       145 ~h~h~v~~sPdG~~l~v~d~g----~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~  220 (365)
T d1jofa_         145 TGIHGMVFDPTETYLYSADLT----ANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEY  220 (365)
T ss_dssp             CCEEEEEECTTSSEEEEEETT----TTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             CcceEEEECCCCCEEEEeeCC----CCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEE
Confidence            467899999988899999987    5788888776544333222     2246899999999999999999999999999


Q ss_pred             eCCCCC
Q psy959           96 DLAGNN  101 (109)
Q Consensus        96 ~~dG~~  101 (109)
                      ++++..
T Consensus       221 ~~~~~~  226 (365)
T d1jofa_         221 VIDPAT  226 (365)
T ss_dssp             EECTTT
T ss_pred             EecCCC
Confidence            888654

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=97.62  E-value=0.00018  Score=49.59  Aligned_cols=74  Identities=8%  Similarity=-0.057  Sum_probs=57.4

Q ss_pred             CCCCccEEEecCCCCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCCcEEEEe--CCCCCceeEEEecCCCeEEEE
Q psy959            8 LLKTHRSLLLQAIPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIE--KDLSQPSGLAIDFDDEMLYWT   85 (109)
Q Consensus         8 l~G~~~~~li~~l~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~~~~l~~--~~~~~p~glaiD~~~~~lYw~   85 (109)
                      -+++..+++.+++..|+||+++|....||+++..    ..+|.+..+++........  .--..|-+|.+|+.++.++.+
T Consensus       193 ~~~~~~~~~~~~l~~pNGI~~s~d~~~lyVa~t~----~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva  268 (340)
T d1v04a_         193 YSPNDVRVVAEGFDFANGINISPDGKYVYIAELL----AHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVG  268 (340)
T ss_dssp             ECSSCEEEEEEEESSEEEEEECTTSSEEEEEEGG----GTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEE
T ss_pred             EcCCceEEEcCCCCccceeEECCCCCEEEEEeCC----CCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEE
Confidence            3566677778999999999999988899999998    6899999998765433322  223468899999888776655

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=97.18  E-value=0.01  Score=37.61  Aligned_cols=74  Identities=15%  Similarity=0.164  Sum_probs=56.3

Q ss_pred             CCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCC-CcEEEEeCCCCCceeEEEecCCCeEEEEeCCCCeEEEEeCCC
Q psy959           21 PGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGS-LKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIERSDLAG   99 (109)
Q Consensus        21 ~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~-~~~~l~~~~~~~p~glaiD~~~~~lYw~D~~~~~I~~~~~dG   99 (109)
                      ..|.+++++|..++||.++..    ..+|...++... ....+ . ....|.++++++....+|.+......+...+...
T Consensus        32 ~~p~~va~spdG~~l~v~~~~----~~~i~v~d~~t~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (301)
T d1l0qa2          32 SNPMGAVISPDGTKVYVANAH----SNDVSIIDTATNNVIATV-P-AGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTS  105 (301)
T ss_dssp             SSEEEEEECTTSSEEEEEEGG----GTEEEEEETTTTEEEEEE-E-CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred             CCceEEEEeCCCCEEEEEECC----CCEEEEEECCCCceeeee-e-ccccccccccccccccccccccccceeeeccccc
Confidence            579999999977789999876    689999988543 33333 2 3457999999999988988887776676666554


Q ss_pred             C
Q psy959          100 N  100 (109)
Q Consensus       100 ~  100 (109)
                      .
T Consensus       106 ~  106 (301)
T d1l0qa2         106 N  106 (301)
T ss_dssp             T
T ss_pred             c
Confidence            3

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=97.11  E-value=0.0021  Score=45.54  Aligned_cols=70  Identities=17%  Similarity=0.332  Sum_probs=51.3

Q ss_pred             ccEEEecCCCCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCCcEEEEeC-C-CCCc------eeEEEecC---CC
Q psy959           12 HRSLLLQAIPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEK-D-LSQP------SGLAIDFD---DE   80 (109)
Q Consensus        12 ~~~~li~~l~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~~~~l~~~-~-~~~p------~glaiD~~---~~   80 (109)
                      ..+++.++|..|++|++.| .|.||+++..    .++|.+.+.++...+.+... . ....      .+||+||.   ++
T Consensus        18 ~~~~ia~~L~~P~~la~~p-dg~llVter~----~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~   92 (450)
T d1crua_          18 DKKVILSNLNKPHALLWGP-DNQIWLTERA----TGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNP   92 (450)
T ss_dssp             CEEEEECCCSSEEEEEECT-TSCEEEEETT----TCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSC
T ss_pred             EEEEEECCCCCceEEEEeC-CCeEEEEEec----CCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCC
Confidence            3466778999999999999 8899999965    48999998766665555442 1 1112      36999974   67


Q ss_pred             eEEEEe
Q psy959           81 MLYWTD   86 (109)
Q Consensus        81 ~lYw~D   86 (109)
                      .+|++-
T Consensus        93 ~iYvsy   98 (450)
T d1crua_          93 YIYISG   98 (450)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            888863

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=96.97  E-value=0.0064  Score=41.39  Aligned_cols=83  Identities=12%  Similarity=0.034  Sum_probs=56.7

Q ss_pred             cceEEeeCCCCeEEEEecCCCC-CCCeEEEEEcC--CCCcEE--EEe--CCCCCceeEEEec-CCCeEEEEeCCCCeEEE
Q psy959           23 RRHFMPPIRLRTLYYTDWGRFG-TAGKILRTTMA--GSLKKV--IIE--KDLSQPSGLAIDF-DDEMLYWTDAVREKIER   94 (109)
Q Consensus        23 p~~iavd~~~g~lywsd~~~~~-~~~~I~~~~~d--G~~~~~--l~~--~~~~~p~glaiD~-~~~~lYw~D~~~~~I~~   94 (109)
                      |..|+++|..++||.++.+... ....|.....+  |...+.  +..  ....+|++|++++ ..++||+++...+.|..
T Consensus       257 ~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v  336 (365)
T d1jofa_         257 ADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEI  336 (365)
T ss_dssp             EEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEE
T ss_pred             ccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEE
Confidence            5679999988899999875321 12345555543  332222  122  2356899999998 56779999999999999


Q ss_pred             EeCCCCCeEEE
Q psy959           95 SDLAGNNREAL  105 (109)
Q Consensus        95 ~~~dG~~~~~l  105 (109)
                      .+.++.....+
T Consensus       337 ~~~~~~~l~~~  347 (365)
T d1jofa_         337 YRWKDEFLHRV  347 (365)
T ss_dssp             EEEETTEEEEE
T ss_pred             EEEeCCcCcEE
Confidence            98887654443

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=96.96  E-value=0.017  Score=36.49  Aligned_cols=75  Identities=13%  Similarity=0.122  Sum_probs=56.2

Q ss_pred             CCCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCC-CCcEEEEeCCCCCceeEEEecCCCeEEEEeCCCCeEEEEeCC
Q psy959           20 IPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAG-SLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIERSDLA   98 (109)
Q Consensus        20 l~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG-~~~~~l~~~~~~~p~glaiD~~~~~lYw~D~~~~~I~~~~~d   98 (109)
                      -..|.++++++....+|++.....  ...|.+.+... .....+-  ....|.++++++.+++||.+....+.|...+..
T Consensus       199 ~~~~~~~~~~~~g~~~~v~~~~~~--~~~v~v~D~~t~~~~~~~~--~~~~~~~va~spdg~~l~va~~~~~~i~v~D~~  274 (301)
T d1l0qa2         199 EAAPSGIAVNPEGTKAYVTNVDKY--FNTVSMIDTGTNKITARIP--VGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTA  274 (301)
T ss_dssp             SSEEEEEEECTTSSEEEEEEECSS--CCEEEEEETTTTEEEEEEE--CCSSEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred             cCCcceeeccccccccccccccce--eeeeeeeecCCCeEEEEEc--CCCCEEEEEEeCCCCEEEEEECCCCeEEEEECC
Confidence            356889999998888988875521  46788877643 2223332  245799999999999999999988999998865

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=96.68  E-value=0.016  Score=37.29  Aligned_cols=77  Identities=13%  Similarity=0.167  Sum_probs=57.1

Q ss_pred             CCCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCCcEEE--EeCCCCCceeEEEecCCCeEEEEeCCCCeEEEEeC
Q psy959           20 IPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVI--IEKDLSQPSGLAIDFDDEMLYWTDAVREKIERSDL   97 (109)
Q Consensus        20 l~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~~~~l--~~~~~~~p~glaiD~~~~~lYw~D~~~~~I~~~~~   97 (109)
                      -..|.+|+++|...+||.++..    ...|.....+.......  .......|.++++++....+|+++.....|...+.
T Consensus        82 ~~~p~~l~~spDg~~l~v~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~  157 (333)
T d1ri6a_          82 PGSLTHISTDHQGQFVFVGSYN----AGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTV  157 (333)
T ss_dssp             SSCCSEEEECTTSSEEEEEETT----TTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEE
T ss_pred             CCCceEEEEcCCCCEEeecccC----CCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEe
Confidence            3679999999988889999876    46776666654443322  23456679999999999999999988777777665


Q ss_pred             CCC
Q psy959           98 AGN  100 (109)
Q Consensus        98 dG~  100 (109)
                      ...
T Consensus       158 ~~~  160 (333)
T d1ri6a_         158 SDD  160 (333)
T ss_dssp             CTT
T ss_pred             ccC
Confidence            443

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=96.21  E-value=0.028  Score=36.01  Aligned_cols=71  Identities=14%  Similarity=0.076  Sum_probs=48.6

Q ss_pred             eEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCC-CcEEEEeCCCCCceeEEEecCCCeEEEEeCCCCeEEEEeCCCC
Q psy959           25 HFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGS-LKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIERSDLAGN  100 (109)
Q Consensus        25 ~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~-~~~~l~~~~~~~p~glaiD~~~~~lYw~D~~~~~I~~~~~dG~  100 (109)
                      |+|+.+...+|+....     ...|...+++-. ...++.-..-..|.++++.|..++||.+....+.|...+++-.
T Consensus         1 g~a~~~~~~~l~~~~~-----~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~   72 (346)
T d1jmxb_           1 GPALKAGHEYMIVTNY-----PNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTC   72 (346)
T ss_dssp             CCCCCTTCEEEEEEET-----TTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred             CccCCCCCcEEEEEcC-----CCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccC
Confidence            3566663444444443     478888888633 2333322334579999999999999999988888988887643

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=95.55  E-value=0.12  Score=32.84  Aligned_cols=64  Identities=19%  Similarity=0.018  Sum_probs=46.9

Q ss_pred             CCCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCC-cEEEEeCC-----CCCceeEEEecCCCeEEEEeC
Q psy959           20 IPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSL-KKVIIEKD-----LSQPSGLAIDFDDEMLYWTDA   87 (109)
Q Consensus        20 l~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~-~~~l~~~~-----~~~p~glaiD~~~~~lYw~D~   87 (109)
                      -..|.++++.|...++|.++..    ...|...+++... ...+....     ...|.++++.+..++||.+..
T Consensus        39 ~~~p~~l~~spDG~~l~v~~~~----~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~  108 (346)
T d1jmxb_          39 KFGPGTAMMAPDNRTAYVLNNH----YGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVN  108 (346)
T ss_dssp             CCSSCEEEECTTSSEEEEEETT----TTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEE
T ss_pred             CCCcceEEECCCCCEEEEEECC----CCcEEEEeCccCeeeeeecccccccccCCceEEEEEecCCCEEEEEec
Confidence            4579999999977889999876    5889988886433 22222111     236889999999999998864

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=94.76  E-value=0.36  Score=32.96  Aligned_cols=79  Identities=13%  Similarity=-0.011  Sum_probs=56.0

Q ss_pred             cceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCC-CCcEEEEeCCCCCceeEEEecCCCeEEEEeCCCCeEEEEeCCCCC
Q psy959           23 RRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAG-SLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIERSDLAGNN  101 (109)
Q Consensus        23 p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG-~~~~~l~~~~~~~p~glaiD~~~~~lYw~D~~~~~I~~~~~dG~~  101 (109)
                      +.+++..+....+|++...    ...|...+... ...++..-..-..|.++++++..+++|-+......+...+.+...
T Consensus       165 ~~~v~~s~dg~~~~vs~~~----~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~  240 (432)
T d1qksa2         165 VAAILASHYRPEFIVNVKE----TGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGK  240 (432)
T ss_dssp             EEEEEECSSSSEEEEEETT----TTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTE
T ss_pred             eeEEEECCCCCEEEEEEcc----CCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccce
Confidence            3456777766778888766    58888888753 333322212346799999999999999998888888888887655


Q ss_pred             eEEE
Q psy959          102 REAL  105 (109)
Q Consensus       102 ~~~l  105 (109)
                      ....
T Consensus       241 ~~~~  244 (432)
T d1qksa2         241 LVAI  244 (432)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            4443

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=94.42  E-value=0.077  Score=33.64  Aligned_cols=64  Identities=17%  Similarity=0.061  Sum_probs=47.0

Q ss_pred             CCCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcC-CCCcEEEEeCC----CCCceeEEEecCCCeEEEEeC
Q psy959           20 IPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMA-GSLKKVIIEKD----LSQPSGLAIDFDDEMLYWTDA   87 (109)
Q Consensus        20 l~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~d-G~~~~~l~~~~----~~~p~glaiD~~~~~lYw~D~   87 (109)
                      -..|.++++.|..+++|.+...    ...|...++. |.....+....    ...|.++++.+..+.+|++..
T Consensus        33 ~~~~~~i~~spDg~~l~v~~~~----~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~  101 (337)
T d1pbyb_          33 GPTPMVPMVAPGGRIAYATVNK----SESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYES  101 (337)
T ss_dssp             TTCCCCEEECTTSSEEEEEETT----TTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEE
T ss_pred             CCCccEEEECCCCCEEEEEECC----CCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcCCCcEEEEeec
Confidence            3568999999977788888765    5789999886 44333332211    346789999999999999864

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=94.24  E-value=0.12  Score=36.26  Aligned_cols=59  Identities=17%  Similarity=0.210  Sum_probs=45.9

Q ss_pred             CCeEEEEecCCCCCCCeEEEEEcCCCCcE-----EEEeCCCCCceeEEEecCCCeEEEEeCCCCeEEE
Q psy959           32 LRTLYYTDWGRFGTAGKILRTTMAGSLKK-----VIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIER   94 (109)
Q Consensus        32 ~g~lywsd~~~~~~~~~I~~~~~dG~~~~-----~l~~~~~~~p~glaiD~~~~~lYw~D~~~~~I~~   94 (109)
                      .|.+|++++.    ...|.+..++.....     ........+|.+|++.|....||.+|...++|.+
T Consensus       368 ~g~lfvg~l~----~~~i~~v~~~~~~~~~~~~~~~~~~~~~R~rdv~~gpDGs~lyv~~d~~G~i~r  431 (450)
T d1crua_         368 ENTLLVPSLK----RGVIFRIKLDPTYSTTYDDAVPMFKSNNRYRDVIASPDGNVLYVLTDTAGNVQK  431 (450)
T ss_dssp             TTEEEEEBSS----SCCEEEEEECTTSSSEEEEEEEESCCSSCEEEEEECTTSSCEEEEECSSCCEEC
T ss_pred             CCCEEEEECc----CCEEEEEEEcCCCceeeEEEEeccCCCCCceEEEECCCCCEEEEEECCCCCEec
Confidence            5789999998    588999999755421     1222345789999999987789999999888875

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=93.89  E-value=0.57  Score=31.86  Aligned_cols=75  Identities=19%  Similarity=0.136  Sum_probs=49.4

Q ss_pred             CCCcceEEe--eCCCCeEEEEecCCCCCCCeEEEEEc--CCCC--cEEEEe--CCCCCceeEEEecCCCeEEEEeCCCCe
Q psy959           20 IPGRRHFMP--PIRLRTLYYTDWGRFGTAGKILRTTM--AGSL--KKVIIE--KDLSQPSGLAIDFDDEMLYWTDAVREK   91 (109)
Q Consensus        20 l~~p~~iav--d~~~g~lywsd~~~~~~~~~I~~~~~--dG~~--~~~l~~--~~~~~p~glaiD~~~~~lYw~D~~~~~   91 (109)
                      +..|.|+++  ++.+|.+|..-...   .+.++...+  ++..  ...++.  ..-.++.|+++|..+++||.++... .
T Consensus       127 ~~~vYGlc~y~~~~~g~~~afv~~k---~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~EGCVvDde~~~LyisEE~~-G  202 (353)
T d1h6la_         127 IDEVYGFSLYHSQKTGKYYAMVTGK---EGEFEQYELNADKNGYISGKKVRAFKMNSQTEGMAADDEYGSLYIAEEDE-A  202 (353)
T ss_dssp             SSSCCCEEEEECTTTCCEEEEEECS---SSEEEEEEEEECTTSSEEEEEEEEEECSSCEEEEEEETTTTEEEEEETTT-E
T ss_pred             cCcceEEEEEecCCCCeEEEEEEcC---CceEEEEEEEcCCCCceeeEeeeccCCCCccceEEEeCCCCcEEEecCcc-c
Confidence            456889998  78888766444433   456655544  3432  122222  2345899999999999999999854 5


Q ss_pred             EEEEeCC
Q psy959           92 IERSDLA   98 (109)
Q Consensus        92 I~~~~~d   98 (109)
                      |++...+
T Consensus       203 iw~~~a~  209 (353)
T d1h6la_         203 IWKFSAE  209 (353)
T ss_dssp             EEEEESS
T ss_pred             eEEEEec
Confidence            7777665

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=93.88  E-value=0.38  Score=29.79  Aligned_cols=80  Identities=8%  Similarity=0.024  Sum_probs=52.2

Q ss_pred             eEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCCcEEEEeCCCCCceeEEEecCCCeEEEEeC--CCCeEEEEeCCCCCe
Q psy959           25 HFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDA--VREKIERSDLAGNNR  102 (109)
Q Consensus        25 ~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glaiD~~~~~lYw~D~--~~~~I~~~~~dG~~~  102 (109)
                      ..+..|....+++.....  ....|...+.++...+.+...  ..-...+..|.+++|+|+..  +...|+.+++||+..
T Consensus       175 ~~~~spdg~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~--~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~  250 (269)
T d2hqsa1         175 DADVSSDGKFMVMVSSNG--GQQHIAKQDLATGGVQVLSST--FLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFK  250 (269)
T ss_dssp             EEEECTTSSEEEEEEECS--SCEEEEEEETTTCCEEECCCS--SSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCE
T ss_pred             ccccccccceeEEEeecC--CceeeeEeecccccceEeecC--ccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCE
Confidence            345566566666665442  246777777766665544332  22334578888999877654  356899999999988


Q ss_pred             EEEEeC
Q psy959          103 EALYLN  108 (109)
Q Consensus       103 ~~l~~~  108 (109)
                      +.|...
T Consensus       251 ~~lt~~  256 (269)
T d2hqsa1         251 ARLPAT  256 (269)
T ss_dssp             EECCCS
T ss_pred             EEEeCC
Confidence            777643

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.84  E-value=0.79  Score=30.67  Aligned_cols=81  Identities=15%  Similarity=0.069  Sum_probs=53.2

Q ss_pred             EEEecCCCCcceEEeeCC-CCeEEEEecCCCCCCCeEEEEEcCC-CCcEEEEeCCCCCceeEEEecCCCeEEEEeCCCCe
Q psy959           14 SLLLQAIPGRRHFMPPIR-LRTLYYTDWGRFGTAGKILRTTMAG-SLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREK   91 (109)
Q Consensus        14 ~~li~~l~~p~~iavd~~-~g~lywsd~~~~~~~~~I~~~~~dG-~~~~~l~~~~~~~p~glaiD~~~~~lYw~D~~~~~   91 (109)
                      ++++..-..|...+++.. ...+|.+...    .++|...++.. ....+|- . -..|.++++.|.+++||-+.. .+.
T Consensus        12 ~~~~~~~~~p~~~~~~~d~~~~~~V~~~~----dg~v~vwD~~t~~~~~~l~-~-g~~~~~vafSPDGk~l~~~~~-d~~   84 (426)
T d1hzua2          12 KVLVKPEDRPKKQLNDLDLPNLFSVTLRD----AGQIALVDGDSKKIVKVID-T-GYAVHISRMSASGRYLLVIGR-DAR   84 (426)
T ss_dssp             EESSCGGGSCSSCCSCCCGGGEEEEEETT----TTEEEEEETTTCSEEEEEE-C-CSSEEEEEECTTSCEEEEEET-TSE
T ss_pred             eeeCCcccCCCcccccCCCCeEEEEEEcC----CCEEEEEECCCCcEEEEEe-C-CCCeeEEEECCCCCEEEEEeC-CCC
Confidence            444443455655555443 3455666665    68999998864 3344443 2 357999999999999998865 357


Q ss_pred             EEEEeCCCCC
Q psy959           92 IERSDLAGNN  101 (109)
Q Consensus        92 I~~~~~dG~~  101 (109)
                      |...+++...
T Consensus        85 v~vwd~~t~~   94 (426)
T d1hzua2          85 IDMIDLWAKE   94 (426)
T ss_dssp             EEEEETTSSS
T ss_pred             EEEEEccCCc
Confidence            7778876443

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.13  E-value=1.6  Score=30.15  Aligned_cols=81  Identities=6%  Similarity=0.049  Sum_probs=49.0

Q ss_pred             EEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCCcEEEEeCCCC---CceeEEEecCCCeEEEEeC--CCCeEEEEe-CCC
Q psy959           26 FMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLS---QPSGLAIDFDDEMLYWTDA--VREKIERSD-LAG   99 (109)
Q Consensus        26 iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~~~~l~~~~~~---~p~glaiD~~~~~lYw~D~--~~~~I~~~~-~dG   99 (109)
                      +++|..++.|||+..........+++++++|+.....++..+.   .-...++++..+.+.-+=.  ....+...+ .+|
T Consensus       365 ~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~~~lt~~~~~~~~~~~~~~S~~~~y~v~~~s~~~~P~~~~~~~~~~  444 (465)
T d1xfda1         365 LAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPGVPMVTVHNTTDK  444 (465)
T ss_dssp             EEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSSSSCCEEEEETTTC
T ss_pred             EEEcCCCCEEEEEEeCCCCCceEEEEEECCCCCcceeeccccCCCCCEEEEEECCCCCEEEEEeecCCCCeEEEEECCCC
Confidence            4799999999999865433467899999999865444332221   1246678776665332222  234454444 445


Q ss_pred             CCeEEEE
Q psy959          100 NNREALY  106 (109)
Q Consensus       100 ~~~~~l~  106 (109)
                      +...+|-
T Consensus       445 ~~~~~Le  451 (465)
T d1xfda1         445 KKMFDLE  451 (465)
T ss_dssp             CEEEEEE
T ss_pred             CEEEEEc
Confidence            5555543

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=90.99  E-value=1  Score=27.67  Aligned_cols=67  Identities=15%  Similarity=0.145  Sum_probs=45.7

Q ss_pred             CeEEEEecCCCCCCCeEEEEEcCCCCcEEEEeCCCCCceeEEEecCCCeEEEEeCCCCeEEEEeCCCCCeEEE
Q psy959           33 RTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIERSDLAGNNREAL  105 (109)
Q Consensus        33 g~lywsd~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glaiD~~~~~lYw~D~~~~~I~~~~~dG~~~~~l  105 (109)
                      ..++|.....  ....|+..+++|...+.|.......+..+  .+..++|+|...  +.|+.+++++...+.|
T Consensus       202 ~~~~~~~~~~--~~~~l~~~d~~g~~~~~lt~~~~~~~~~~--SpDG~~I~f~~~--~~l~~~d~~~g~~~~i  268 (281)
T d1k32a2         202 HRIYFITDID--GFGQIYSTDLDGKDLRKHTSFTDYYPRHL--NTDGRRILFSKG--GSIYIFNPDTEKIEKI  268 (281)
T ss_dssp             TEEEEEECTT--SSCEEEEEETTSCSCEECCCCCSSCEEEE--EESSSCEEEEET--TEEEEECTTTCCEEEC
T ss_pred             cccceecccc--cccceEEEeCCCCceEEeecCCCcccccC--cCCCCEEEEEeC--CEEEEEECCCCCEEEe
Confidence            3455544322  26889999999999887754333334344  455888998764  5799999998877655

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=89.42  E-value=2.1  Score=28.93  Aligned_cols=74  Identities=16%  Similarity=0.135  Sum_probs=49.4

Q ss_pred             CCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcC---CCCcEEEEeC----CCCCceeEEEecC---CCeEEEEeCCCC
Q psy959           21 PGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMA---GSLKKVIIEK----DLSQPSGLAIDFD---DEMLYWTDAVRE   90 (109)
Q Consensus        21 ~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~d---G~~~~~l~~~----~~~~p~glaiD~~---~~~lYw~D~~~~   90 (109)
                      ..+.|+++|..++.||.++-.     ..|.+...+   +.....+...    -..-|.||||=..   .+.|.-++.+..
T Consensus       180 ~q~EGCVvDde~~~LyisEE~-----~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n  254 (353)
T d1h6la_         180 SQTEGMAADDEYGSLYIAEED-----EAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNS  254 (353)
T ss_dssp             SCEEEEEEETTTTEEEEEETT-----TEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGT
T ss_pred             CccceEEEeCCCCcEEEecCc-----cceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCC
Confidence            567899999999999999864     678888775   3334444432    1457999998543   345666666655


Q ss_pred             eEEEEeCCC
Q psy959           91 KIERSDLAG   99 (109)
Q Consensus        91 ~I~~~~~dG   99 (109)
                      +.-..+..+
T Consensus       255 ~f~vydr~~  263 (353)
T d1h6la_         255 SYAIYERQG  263 (353)
T ss_dssp             EEEEEESST
T ss_pred             eEEEEecCC
Confidence            555554444

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=88.70  E-value=0.41  Score=33.56  Aligned_cols=56  Identities=13%  Similarity=0.086  Sum_probs=42.9

Q ss_pred             eCCCCeEEEEecCCCCCCCeEEEEEcCCCCcEEEEe-CCCCCceeEEEecCCCeEEEEeCC
Q psy959           29 PIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIE-KDLSQPSGLAIDFDDEMLYWTDAV   88 (109)
Q Consensus        29 d~~~g~lywsd~~~~~~~~~I~~~~~dG~~~~~l~~-~~~~~p~glaiD~~~~~lYw~D~~   88 (109)
                      .|..++||.+|..    +.+|.+.+++--....++. .....|+|+++.+..+++|.+...
T Consensus        80 tpDGr~lfV~d~~----~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~  136 (441)
T d1qnia2          80 RYDGKYLFINDKA----NTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNA  136 (441)
T ss_dssp             EEEEEEEEEEETT----TTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEE
T ss_pred             cCCCCEEEEEcCC----CCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEecc
Confidence            3546789999988    7999999997544443443 457789999999999999987654

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.08  E-value=1  Score=31.13  Aligned_cols=78  Identities=18%  Similarity=0.198  Sum_probs=43.3

Q ss_pred             EEeeCCCCeEEEEecCCCCCCCeEEEEEcC-------CCCcEEEEeCCCCCceeEEEecCCCeEEEEeCC----CCeEEE
Q psy959           26 FMPPIRLRTLYYTDWGRFGTAGKILRTTMA-------GSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAV----REKIER   94 (109)
Q Consensus        26 iavd~~~g~lywsd~~~~~~~~~I~~~~~d-------G~~~~~l~~~~~~~p~glaiD~~~~~lYw~D~~----~~~I~~   94 (109)
                      ....+..+.++|....+++....++...+.       |...+.|......--.-+++|..++.||++-..    ...+++
T Consensus       311 p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~  390 (465)
T d1xfda1         311 PVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYS  390 (465)
T ss_dssp             CEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEE
T ss_pred             eeEccCCCeeEEEEeeeecccCceEEEEeccccccCCCceeEEeccCCceEEEEEEEcCCCCEEEEEEeCCCCCceEEEE
Confidence            344554555544432222224566666543       222233322222212235799999999998653    457999


Q ss_pred             EeCCCCCeE
Q psy959           95 SDLAGNNRE  103 (109)
Q Consensus        95 ~~~dG~~~~  103 (109)
                      ++++|+..+
T Consensus       391 v~l~g~~~~  399 (465)
T d1xfda1         391 ANTVGNFNR  399 (465)
T ss_dssp             ECSSTTCCC
T ss_pred             EECCCCCcc
Confidence            999997643

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=87.60  E-value=2.1  Score=26.77  Aligned_cols=64  Identities=6%  Similarity=-0.050  Sum_probs=46.8

Q ss_pred             cCCCCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCCcEEEEeCCCCCceeEEEecCCCeEEEEe
Q psy959           18 QAIPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTD   86 (109)
Q Consensus        18 ~~l~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glaiD~~~~~lYw~D   86 (109)
                      ..-..+.+++..|...+|.....     ...+...++++.....+..........+++.+.++.|.++.
T Consensus        83 ~~~~~v~~~~~spdg~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~  146 (360)
T d1k32a3          83 ENLGNVFAMGVDRNGKFAVVAND-----RFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGF  146 (360)
T ss_dssp             CCCCSEEEEEECTTSSEEEEEET-----TSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEE
T ss_pred             CCCceEEeeeecccccccceecc-----ccccccccccccceeeeeecccccccchhhccceeeeeeec
Confidence            44456678999996666665544     47888889987776666665556677899998888888765

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=86.83  E-value=3.2  Score=27.95  Aligned_cols=76  Identities=12%  Similarity=-0.105  Sum_probs=52.7

Q ss_pred             CCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCC-CCcEEEEeCCCCCceeEEEec----CCCeEEEEeCCCCeEEEE
Q psy959           21 PGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAG-SLKKVIIEKDLSQPSGLAIDF----DDEMLYWTDAVREKIERS   95 (109)
Q Consensus        21 ~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG-~~~~~l~~~~~~~p~glaiD~----~~~~lYw~D~~~~~I~~~   95 (109)
                      ..|.++++.|..+++|.+..     ...|...+++. ....+.--.....|.++++.+    ..++||-+....+.|...
T Consensus        62 ~~~~~v~fSpDG~~l~~~s~-----dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~  136 (432)
T d1qksa2          62 YAVHISRLSASGRYLFVIGR-----DGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIM  136 (432)
T ss_dssp             SCEEEEEECTTSCEEEEEET-----TSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEE
T ss_pred             CCeeEEEECCCCCEEEEEcC-----CCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEE
Confidence            57999999997778887654     37888888864 433332222345788888765    467788888777777777


Q ss_pred             eCCCCC
Q psy959           96 DLAGNN  101 (109)
Q Consensus        96 ~~dG~~  101 (109)
                      +.....
T Consensus       137 d~~t~~  142 (432)
T d1qksa2         137 DGETLE  142 (432)
T ss_dssp             ETTTCC
T ss_pred             eCcccc
Confidence            765443

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=86.13  E-value=2.4  Score=26.72  Aligned_cols=63  Identities=13%  Similarity=0.088  Sum_probs=39.2

Q ss_pred             CcceE-EeeCCCCeEEEEecCCCCCCCeEEEEEcCCCC-cEEEEeCCCCCceeEEEecCCCeEEEEeC
Q psy959           22 GRRHF-MPPIRLRTLYYTDWGRFGTAGKILRTTMAGSL-KKVIIEKDLSQPSGLAIDFDDEMLYWTDA   87 (109)
Q Consensus        22 ~p~~i-avd~~~g~lywsd~~~~~~~~~I~~~~~dG~~-~~~l~~~~~~~p~glaiD~~~~~lYw~D~   87 (109)
                      .|..+ |.-|...++|.++.........++..+.+... ...+-   .....++++.|..++||++..
T Consensus         2 ~p~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~---~g~~~~~a~SpDg~~l~v~~~   66 (355)
T d2bbkh_           2 EPRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMID---GGFLPNPVVADDGSFIAHAST   66 (355)
T ss_dssp             CCCBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEE---ECSSCEEEECTTSSCEEEEEE
T ss_pred             CCcEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEE---CCCCCceEEcCCCCEEEEEeC
Confidence            45554 45576778998875432124568887765332 23332   223337999999999999864

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=85.88  E-value=2.5  Score=25.78  Aligned_cols=73  Identities=12%  Similarity=-0.010  Sum_probs=48.7

Q ss_pred             eEEEEecCCCCCCCeEEEEEcCCCCcEEEEeCCCCCceeEEEecCCCeEEEEeCC--CCeEEEEeCCCCCeEEEEe
Q psy959           34 TLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAV--REKIERSDLAGNNREALYL  107 (109)
Q Consensus        34 ~lywsd~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glaiD~~~~~lYw~D~~--~~~I~~~~~dG~~~~~l~~  107 (109)
                      --|.++.........|+.++.||++.+.|.... .....-+..|..++|.++...  ...+.....+|..++.+..
T Consensus         6 iay~~~~~~~~~~~~l~i~d~dG~~~~~l~~~~-~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~   80 (269)
T d2hqsa1           6 IAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSP-QPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVAS   80 (269)
T ss_dssp             EEEEEECSSSSCCEEEEEEETTSCSCEEEEEES-SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEEC
T ss_pred             EEEEEEeCCCCceEEEEEEcCCCCCcEEEecCC-CceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeEEee
Confidence            346565442111236999999999999987642 233455788889998776553  4577888888877766553

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=85.84  E-value=2.5  Score=25.74  Aligned_cols=72  Identities=7%  Similarity=0.042  Sum_probs=50.3

Q ss_pred             EeeCCCCeEEEEecCCCCCCCeEEEEEcCCCCcEEEEeCCCCCceeEEEecCCCeEEEEeCC-----CCeEEEEeCCCCC
Q psy959           27 MPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAV-----REKIERSDLAGNN  101 (109)
Q Consensus        27 avd~~~g~lywsd~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glaiD~~~~~lYw~D~~-----~~~I~~~~~dG~~  101 (109)
                      .-|....+|.|+.      ...|++.+++|...+.|.. .-....+.++.|.+++|+|+...     ...|..++.+|..
T Consensus         7 sPdi~G~~v~f~~------~~dl~~~d~~~g~~~~Lt~-~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~   79 (281)
T d1k32a2           7 NPDIHGDRIIFVC------CDDLWEHDLKSGSTRKIVS-NLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE   79 (281)
T ss_dssp             EEEEETTEEEEEE------TTEEEEEETTTCCEEEEEC-SSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE
T ss_pred             CCCCCCCEEEEEe------CCcEEEEECCCCCEEEEec-CCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCc
Confidence            3343355777774      3579999999988877654 33455677889999999887431     1358888988877


Q ss_pred             eEEE
Q psy959          102 REAL  105 (109)
Q Consensus       102 ~~~l  105 (109)
                      .+.|
T Consensus        80 ~~~l   83 (281)
T d1k32a2          80 IKRI   83 (281)
T ss_dssp             EEEC
T ss_pred             eEEe
Confidence            6655

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=84.85  E-value=4.6  Score=28.00  Aligned_cols=31  Identities=13%  Similarity=0.208  Sum_probs=26.8

Q ss_pred             CCCceeEEEecCCCeEEEEeCCCCeEEEEeC
Q psy959           67 LSQPSGLAIDFDDEMLYWTDAVREKIERSDL   97 (109)
Q Consensus        67 ~~~p~glaiD~~~~~lYw~D~~~~~I~~~~~   97 (109)
                      -..|+|++++|..+++|.+......+...++
T Consensus       257 gksPhGv~vSPDGkyl~~~~~~~~tvsv~d~  287 (441)
T d1qnia2         257 PKNPHGLNTSPDGKYFIANGKLSPTVSVIAI  287 (441)
T ss_dssp             BSSCCCEEECTTSCEEEEECTTSSBEEEEEG
T ss_pred             CCCccCceECCCCCEEEEeCCcCCcEEEEEe
Confidence            3579999999999999999888888887774

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=84.76  E-value=3.8  Score=27.05  Aligned_cols=75  Identities=9%  Similarity=-0.136  Sum_probs=50.2

Q ss_pred             CCcceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCCcEEEEe-CCCCCceeEEEec----CCCeEEEEeCCCCeEEEE
Q psy959           21 PGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIE-KDLSQPSGLAIDF----DDEMLYWTDAVREKIERS   95 (109)
Q Consensus        21 ~~p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~~~~l~~-~~~~~p~glaiD~----~~~~lYw~D~~~~~I~~~   95 (109)
                      ..|.++++.|..+++|.+..     .+.|...+++......+.. .....|.++++.+    ..++||.+....+.+...
T Consensus        62 ~~~~~vafSPDGk~l~~~~~-----d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~  136 (426)
T d1hzua2          62 YAVHISRMSASGRYLLVIGR-----DARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIM  136 (426)
T ss_dssp             SSEEEEEECTTSCEEEEEET-----TSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEE
T ss_pred             CCeeEEEECCCCCEEEEEeC-----CCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEE
Confidence            57999999997777776654     4688888887554333322 3345678887764    466788877666666666


Q ss_pred             eCCCC
Q psy959           96 DLAGN  100 (109)
Q Consensus        96 ~~dG~  100 (109)
                      +....
T Consensus       137 d~~~~  141 (426)
T d1hzua2         137 DGETL  141 (426)
T ss_dssp             ETTTC
T ss_pred             cCCcc
Confidence            55543

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=80.88  E-value=2.8  Score=26.68  Aligned_cols=64  Identities=5%  Similarity=-0.123  Sum_probs=40.3

Q ss_pred             cceEEeeCCCCeEEEEecCCCCCCCeEEEEEcCCCCcEEEEeCCCCCceeEEEecCCCeEEEEeCC
Q psy959           23 RRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAV   88 (109)
Q Consensus        23 p~~iavd~~~g~lywsd~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glaiD~~~~~lYw~D~~   88 (109)
                      +.++|+-|..+++|.++.........+...+.+  ..+.+..-....+.++++.|..++||.+...
T Consensus        23 ~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~--tg~~~~~~~~~~~~~~a~SpDG~~l~va~~~   86 (373)
T d2madh_          23 TNDEAPGADGRRSYINLPAHHSAIIQQWVLDAG--SGSILGHVNGGFLPNPVAAHSGSEFALASTS   86 (373)
T ss_pred             ccccccCCCCCEEEEEcccccCCCceEEEEECC--CCCEEEEEeCCCCccEEEcCCCCEEEEEeec
Confidence            356788887888998875432223556666543  2223322223345579999999999998653

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=80.41  E-value=3.6  Score=27.49  Aligned_cols=70  Identities=9%  Similarity=0.034  Sum_probs=44.3

Q ss_pred             CCeEEEEecCCCCCCCeEEEEEcCCCCcEEEEeCCCCCceeEEEecCCCeEEEEeCC------CCeEEEEeCCCCCeEEE
Q psy959           32 LRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAV------REKIERSDLAGNNREAL  105 (109)
Q Consensus        32 ~g~lywsd~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glaiD~~~~~lYw~D~~------~~~I~~~~~dG~~~~~l  105 (109)
                      .+.++|.....  ....|+....+|.....+.... ....++ +.+.++.+|++-..      ...|++++++|..+..+
T Consensus       331 ~~~~~~~s~~d--g~~~ly~~~~~g~~~~~lt~g~-~~v~~~-~~~d~~~iyf~a~~~~~~p~~~~ly~v~~~g~~~~~~  406 (470)
T d2bgra1         331 NSFYKIISNEE--GYRHICYFQIDKKDCTFITKGT-WEVIGI-EALTSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVTC  406 (470)
T ss_dssp             SEEEEEEECTT--SCEEEEEEETTCSCCEESCCSS-SCEEEE-EEECSSEEEEEESCGGGCTTCBEEEEEETTCTTCEEE
T ss_pred             CCcEEEEeccC--cCceeEEEeccCCceeeeccCC-eeEEEE-EEECCCEEEEEEecCCCCcceEEEEEEECCCCCceeE
Confidence            44555554331  2577899999988877665433 334443 34457889988543      23699999998765444