Psyllid ID: psy9619

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------
MFSKTALLVPQCMQQQTRNMATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERELKAAKPIGAGASAFYSKAEVTTPEGTESPKELLIAVTSDRGLCGAVHTSVARWIRNELQTKGDKVLVITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQETSKYNFTSGKIIYNKFKSVVSYTTSDLPIFSLASVTAAPKLGVYDSLDADVIQSYLEFSMAAMLYYAMKEGDKVLVITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQETSKYNFTSGKIIYNKFKSVVSYTTSDLPIFSLASVTAAPKLGVYDSLDADVIQSYLEFSMAAMLYYAMKEGACSEQSSRMTSMDNASKNAGEMIEKLTLTFNRTRQAVITRELIEIISGASAL
cccccccccccHHcccccccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHcccccccccccccEEEEEEccccccccccHHHHHHHHHHHHHHccccEEEEEEcccHHHHHHHHHccccEEEEcccccccccHHHHHHHHHHHHcccccEEEEEEEEEccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEcHHHHHHHccccccccEEEEcccccccccHHHHHHHHHHHHcccccEEEEEcccccccccEEcEEEEcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
cccHHEEEccccHHHHHHcHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHcHHcccccccccccccEEEEEEEEccccccHHHHHHHHHHHHHHHHHcccEEEEEEEcHHHHHHHHHHccccEEEEEcccccccccHHHHHHHHHHHHcccccEEEEEEEcEEEcccccccEcccccccccccccccEEEcccHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEcHHHHHHHHHHccccEEEEEcccccccccHHHHHHHHHHHHcccccEEEEEEEcEEEcccccccEcccccccccccccccEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
mfsktallvpqcMQQQTRNMATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERELKaakpigagasafyskaevttpegtespKELLIAVTsdrglcgavHTSVARWIRNELQTKGDKVLVITIGDKSRAILQRLYGNNIILaanevgrrpptfldaskvaqetskynftsgkiiyNKFKSVvsyttsdlpifslasvtaapklgvydslDADVIQSYLEFSMAAMLYYAMKEGDKVLVITIGDKSRAILQRLYGNNIILaanevgrrpptfldaskvaqetskynftsgkiiyNKFKSVvsyttsdlpifslasvtaapklgvydslDADVIQSYLEFSMAAMLYYAMKEgacseqssrmtsmdNASKNAGEMIEKLTLTFNRTRQAVITRELIEIISGASAL
mfsktallvpqcmQQQTRNMATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERELKAakpigagasafySKAEvttpegtespKELLIAVTSDRGLCGAVHTSVARWirnelqtkgdkvlviTIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASkvaqetskynftsgkiiynKFKSVVSYTTSDLPIFSLASVTAAPKLGVYDSLDADVIQSYLEFSMAAMLYYAMKEGDKVLVITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASkvaqetskynftsgkiiynKFKSVVSYTTSDLPIFSLASVTAAPKLGVYDSLDADVIQSYLEFSMAAMLYYAMKEGACSEQSSRMTSMDNASKNAGEMIEKLTLTFNRTRQAVITRELIEIISGASAL
MFSKTALLVPQCMQQQTRNMATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERELKAAKPIGAGASAFYSKAEVTTPEGTESPKELLIAVTSDRGLCGAVHTSVARWIRNELQTKGDKVLVITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQETSKYNFTSGKIIYNKFKSVVSYTTSDLPIFSLASVTAAPKLGVYDSLDADVIQSYLEFSMAAMLYYAMKEGDKVLVITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQETSKYNFTSGKIIYNKFKSVVSYTTSDLPIFSLASVTAAPKLGVYDSLDADVIQSYLEFSMAAMLYYAMKEGACSEQSSRMTSMDNASKNAGEMIEKLTLTFNRTRQAVITRELIEIISGASAL
******************NMATLKAISIRLKSVKNIQKIT************************************************LLIAVTSDRGLCGAVHTSVARWIRNELQTKGDKVLVITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQETSKYNFTSGKIIYNKFKSVVSYTTSDLPIFSLASVTAAPKLGVYDSLDADVIQSYLEFSMAAMLYYAMKEGDKVLVITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQETSKYNFTSGKIIYNKFKSVVSYTTSDLPIFSLASVTAAPKLGVYDSLDADVIQSYLEFSMAAMLYYAMKE***********************IEKLTLTFNRTRQAVITRELIEII******
*****************RNMATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERELKAAKPIGAGASAFYS**************ELLIAVTSDRGLCGAVHTSVARWIRNELQTKGDKVLVITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQETSKYNFTSGKIIYNKFKSVVS*****************PKLGVYDSLDADVIQSYLEFSMAAMLYYAMKEGDKVLVITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQETSKYNFTSGKIIYNKFKSVVSYTTSDLPIFSLA****APKLGVYDSLDADVIQSYLEFSMAAMLYYAMKEGACSEQSSRMTSMDNASKNAGEMIEKLTLTFNRTRQAVITRELIEIISGASAL
MFSKTALLVPQCMQQQTRNMATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERELKAAKPIGAGASAFYSK***********PKELLIAVTSDRGLCGAVHTSVARWIRNELQTKGDKVLVITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQETSKYNFTSGKIIYNKFKSVVSYTTSDLPIFSLASVTAAPKLGVYDSLDADVIQSYLEFSMAAMLYYAMKEGDKVLVITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQETSKYNFTSGKIIYNKFKSVVSYTTSDLPIFSLASVTAAPKLGVYDSLDADVIQSYLEFSMAAMLYYAMKEG**************ASKNAGEMIEKLTLTFNRTRQAVITRELIEIISGASAL
*FSKTALLVPQCMQQQTRNMATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERELKAAKPIGAGASAFYSKAEVTTPEGTESPKELLIAVTSDRGLCGAVHTSVARWIRNELQTKGDKVLVITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQETSKYNFTSGKIIYNKFKSVVSYTTSDLPIFSLASVTAAPKLGVYDSLDADVIQSYLEFSMAAMLYYAMKEGDKVLVITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQETSKYNFTSGKIIYNKFKSVVSYTTSDLPIFSLASVTAAPKLGVYDSLDADVIQSYLEFSMAAMLYYAMKEGACSEQSSRMTSMDNASKNAGEMIEKLTLTFNRTRQAVITRELIEIISGAS**
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MFSKTALLVPQCMQQQTRNMATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERELKAAKPIGAGASAFYSKAEVTTPEGTESPKELLIAVTSDRGLCGAVHTSVARWIRNELQTKGDKVLVITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQETSKYNFTSGKIIYNKFKSVVSYTTSDLPIFSLASVTAAPKLGVYDSLDADVIQSYLEFSMAAMLYYAMKEGDKVLVITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQETSKYNFTSGKIIYNKFKSVVSYTTSDLPIFSLASVTAAPKLGVYDSLDADVIQSYLEFSMAAMLYYAMKEGACSEQSSRMTSMDNASKNAGEMIEKLTLTFNRTRQAVITRELIEIISGASAL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query407 2.2.26 [Sep-21-2011]
O01666297 ATP synthase subunit gamm yes N/A 0.579 0.794 0.647 2e-85
P36542298 ATP synthase subunit gamm yes N/A 0.570 0.778 0.516 3e-66
P05631298 ATP synthase subunit gamm yes N/A 0.570 0.778 0.508 3e-66
Q5RBS9297 ATP synthase subunit gamm yes N/A 0.570 0.781 0.512 4e-66
Q4R5B0298 ATP synthase subunit gamm N/A N/A 0.570 0.778 0.504 7e-66
Q91VR2298 ATP synthase subunit gamm yes N/A 0.574 0.785 0.495 6e-65
P35435273 ATP synthase subunit gamm yes N/A 0.525 0.783 0.520 2e-62
P49377289 ATP synthase subunit gamm yes N/A 0.535 0.754 0.376 5e-35
P38077311 ATP synthase subunit gamm yes N/A 0.547 0.717 0.349 2e-34
Q96250325 ATP synthase subunit gamm yes N/A 0.415 0.52 0.397 9e-30
>sp|O01666|ATPG_DROME ATP synthase subunit gamma, mitochondrial OS=Drosophila melanogaster GN=ATPsyn-gamma PE=2 SV=2 Back     alignment and function desciption
 Score =  316 bits (810), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 158/244 (64%), Positives = 186/244 (76%), Gaps = 8/244 (3%)

Query: 1   MFSKTALLVPQCMQ-----QQTRNMATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAE 55
           M  +T LL+P  M+     QQ R MATLK ISIRLKSVKNIQKITQSMKMVSAAKY RAE
Sbjct: 2   MMQRTQLLLPLAMEATMLAQQQRGMATLKMISIRLKSVKNIQKITQSMKMVSAAKYARAE 61

Query: 56  RELKAAKPIGAGASAFYSKAEVTTPEGTESPKELLIAVTSDRGLCGAVHTSVARWIRNEL 115
           R+LKAA+P G GA  F+ K E+   E  E PK+LLIAVTSDRGLCGAVHT VAR IR EL
Sbjct: 62  RDLKAARPYGIGAQQFFEKTEIQPDEKAE-PKKLLIAVTSDRGLCGAVHTGVARLIRGEL 120

Query: 116 QTKGDKVLVITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQET--SKYNFT 173
                   V  +GDKSRAIL RLYG NI++ ANEVGR PPTFLDASK+A E   + Y++T
Sbjct: 121 AQDEANTKVFCVGDKSRAILSRLYGKNILMVANEVGRLPPTFLDASKIANEVLQTGYDYT 180

Query: 174 SGKIIYNKFKSVVSYTTSDLPIFSLASVTAAPKLGVYDSLDADVIQSYLEFSMAAMLYYA 233
            GKI+YN+FKSVVSY  S LPIFS ++V  + KL VYDSLD+DV++SYLEFS+A++++Y 
Sbjct: 181 EGKIVYNRFKSVVSYQCSTLPIFSGSTVEKSEKLAVYDSLDSDVVKSYLEFSLASLIFYT 240

Query: 234 MKEG 237
           MKEG
Sbjct: 241 MKEG 244
Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(1) domain and the central stalk which is part of the complex rotary element. The gamma subunit protrudes into the catalytic domain formed of alpha(3)beta(3). Rotation of the central stalk against the surrounding alpha(3)beta(3) subunits leads to hydrolysis of ATP in three separate catalytic sites on the beta subunits.
Drosophila melanogaster (taxid: 7227)
>sp|P36542|ATPG_HUMAN ATP synthase subunit gamma, mitochondrial OS=Homo sapiens GN=ATP5C1 PE=1 SV=1 Back     alignment and function description
>sp|P05631|ATPG_BOVIN ATP synthase subunit gamma, mitochondrial OS=Bos taurus GN=ATP5C1 PE=1 SV=3 Back     alignment and function description
>sp|Q5RBS9|ATPG_PONAB ATP synthase subunit gamma, mitochondrial OS=Pongo abelii GN=ATP5C1 PE=2 SV=1 Back     alignment and function description
>sp|Q4R5B0|ATPG_MACFA ATP synthase subunit gamma, mitochondrial OS=Macaca fascicularis GN=ATP5C1 PE=2 SV=1 Back     alignment and function description
>sp|Q91VR2|ATPG_MOUSE ATP synthase subunit gamma, mitochondrial OS=Mus musculus GN=Atp5c1 PE=1 SV=1 Back     alignment and function description
>sp|P35435|ATPG_RAT ATP synthase subunit gamma, mitochondrial OS=Rattus norvegicus GN=Atp5c1 PE=1 SV=2 Back     alignment and function description
>sp|P49377|ATPG_KLULA ATP synthase subunit gamma, mitochondrial OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=ATP3 PE=1 SV=1 Back     alignment and function description
>sp|P38077|ATPG_YEAST ATP synthase subunit gamma, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ATP3 PE=1 SV=1 Back     alignment and function description
>sp|Q96250|ATPG3_ARATH ATP synthase subunit gamma, mitochondrial OS=Arabidopsis thaliana GN=ATPC PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query407
90820034289 putative mitochondrial ATP synthase gamm 0.574 0.809 0.708 2e-91
46561754289 putative mitochondrial ATP synthase gamm 0.574 0.809 0.696 1e-90
53830718289 putative mitochondrial ATP synthase gamm 0.574 0.809 0.696 3e-90
357621324296 H+ transporting ATP synthase gamma subun 0.545 0.75 0.704 4e-88
358443042275 control protein HCTL028 [Heliconius melp 0.545 0.807 0.718 9e-88
91086775291 PREDICTED: similar to ATP synthase gamma 0.577 0.807 0.672 3e-87
242008370298 ATP synthase gamma chain isoform 1, puta 0.560 0.765 0.692 2e-86
389608749296 ATP synthase-gamma chain [Papilio xuthus 0.542 0.746 0.703 3e-86
195394531297 GJ10518 [Drosophila virilis] gi|19414260 0.579 0.794 0.647 1e-85
195112457297 GI22330 [Drosophila mojavensis] gi|19391 0.579 0.794 0.643 2e-84
>gi|90820034|gb|ABD98774.1| putative mitochondrial ATP synthase gamma-subunit [Graphocephala atropunctata] Back     alignment and taxonomy information
 Score =  342 bits (877), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 168/237 (70%), Positives = 201/237 (84%), Gaps = 3/237 (1%)

Query: 1   MFSKTALLVPQCM-QQQTRNMATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERELK 59
           MFS+T L++     QQQ R MATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAER+L+
Sbjct: 1   MFSRTTLVLQTLNGQQQVRGMATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLR 60

Query: 60  AAKPIGAGASAFYSKAEVTTPEGTESPKELLIAVTSDRGLCGAVHTSVARWIRNELQTKG 119
            A+P G GA  FY +AEV+    +E+P++L+IAVTSDRGLCGAVHT V+R IRNEL   G
Sbjct: 61  QARPYGEGAQQFYERAEVSGE--SEAPQKLIIAVTSDRGLCGAVHTQVSRAIRNELAKSG 118

Query: 120 DKVLVITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQETSKYNFTSGKIIY 179
               V+ IGDKSRAILQRLYG NIIL ANEVGR+PPTFLDA+K+AQ+T  +NFTSGKI+Y
Sbjct: 119 ANTSVLCIGDKSRAILQRLYGKNIILVANEVGRKPPTFLDAAKIAQQTKDFNFTSGKIVY 178

Query: 180 NKFKSVVSYTTSDLPIFSLASVTAAPKLGVYDSLDADVIQSYLEFSMAAMLYYAMKE 236
           N+FKSVVSY+TS++P+FS A+V AAPKLGVYDSLD +VI+SYLEFS+A++L+Y MKE
Sbjct: 179 NRFKSVVSYSTSEIPLFSAAAVAAAPKLGVYDSLDEEVIKSYLEFSLASLLFYCMKE 235

Source: Graphocephala atropunctata

Species: Graphocephala atropunctata

Genus: Graphocephala

Family: Cicadellidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|46561754|gb|AAT01082.1| putative mitochondrial ATP synthase gamma-subunit [Homalodisca vitripennis] Back     alignment and taxonomy information
>gi|53830718|gb|AAU95202.1| putative mitochondrial ATP synthase gamma-subunit [Oncometopia nigricans] Back     alignment and taxonomy information
>gi|357621324|gb|EHJ73192.1| H+ transporting ATP synthase gamma subunit [Danaus plexippus] Back     alignment and taxonomy information
>gi|358443042|gb|AEU11767.1| control protein HCTL028 [Heliconius melpomene] Back     alignment and taxonomy information
>gi|91086775|ref|XP_972721.1| PREDICTED: similar to ATP synthase gamma chain, mitochondrial [Tribolium castaneum] gi|270011000|gb|EFA07448.1| hypothetical protein TcasGA2_TC009010 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|242008370|ref|XP_002424979.1| ATP synthase gamma chain isoform 1, putative [Pediculus humanus corporis] gi|212508608|gb|EEB12241.1| ATP synthase gamma chain isoform 1, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|389608749|dbj|BAM17986.1| ATP synthase-gamma chain [Papilio xuthus] Back     alignment and taxonomy information
>gi|195394531|ref|XP_002055896.1| GJ10518 [Drosophila virilis] gi|194142605|gb|EDW59008.1| GJ10518 [Drosophila virilis] Back     alignment and taxonomy information
>gi|195112457|ref|XP_002000789.1| GI22330 [Drosophila mojavensis] gi|193917383|gb|EDW16250.1| GI22330 [Drosophila mojavensis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query407
FB|FBgn0020235297 ATPsyn-gamma "ATP synthase-gam 0.579 0.794 0.647 2.1e-75
UNIPROTKB|J9NZA4267 J9NZA4 "Uncharacterized protei 0.319 0.486 0.589 1.3e-63
UNIPROTKB|H9KZF8263 ATP5C1 "ATP synthase subunit g 0.574 0.889 0.537 2e-63
ZFIN|ZDB-GENE-030131-8901292 atp5c1 "ATP synthase, H+ trans 0.570 0.794 0.526 4.2e-63
WB|WBGene00022089313 Y69A2AR.18 [Caenorhabditis ele 0.545 0.709 0.555 6.4e-60
UNIPROTKB|P36542298 ATP5C1 "ATP synthase subunit g 0.552 0.755 0.534 8.1e-60
UNIPROTKB|Q6PCU0298 Atp5c1 "ATP synthase gamma cha 0.574 0.785 0.504 8.1e-60
UNIPROTKB|Q5RBS9297 ATP5C1 "ATP synthase subunit g 0.552 0.757 0.529 1e-59
UNIPROTKB|P05631298 ATP5C1 "ATP synthase subunit g 0.538 0.734 0.535 1e-59
UNIPROTKB|Q4R5B0298 ATP5C1 "ATP synthase subunit g 0.552 0.755 0.521 1.7e-59
FB|FBgn0020235 ATPsyn-gamma "ATP synthase-gamma chain" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 760 (272.6 bits), Expect = 2.1e-75, P = 2.1e-75
 Identities = 158/244 (64%), Positives = 186/244 (76%)

Query:     1 MFSKTALLVPQCMQ-----QQTRNMATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAE 55
             M  +T LL+P  M+     QQ R MATLK ISIRLKSVKNIQKITQSMKMVSAAKY RAE
Sbjct:     2 MMQRTQLLLPLAMEATMLAQQQRGMATLKMISIRLKSVKNIQKITQSMKMVSAAKYARAE 61

Query:    56 RELKAAKPIGAGASAFYSKAEVTTPEGTESPKELLIAVTSDRGLCGAVHTSVARWIRNEL 115
             R+LKAA+P G GA  F+ K E+   E  E PK+LLIAVTSDRGLCGAVHT VAR IR EL
Sbjct:    62 RDLKAARPYGIGAQQFFEKTEIQPDEKAE-PKKLLIAVTSDRGLCGAVHTGVARLIRGEL 120

Query:   116 QTKGDKVLVITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQETSK--YNFT 173
                     V  +GDKSRAIL RLYG NI++ ANEVGR PPTFLDASK+A E  +  Y++T
Sbjct:   121 AQDEANTKVFCVGDKSRAILSRLYGKNILMVANEVGRLPPTFLDASKIANEVLQTGYDYT 180

Query:   174 SGKIIYNKFKSVVSYTTSDLPIFSLASVTAAPKLGVYDSLDADVIQSYLEFSMAAMLYYA 233
              GKI+YN+FKSVVSY  S LPIFS ++V  + KL VYDSLD+DV++SYLEFS+A++++Y 
Sbjct:   181 EGKIVYNRFKSVVSYQCSTLPIFSGSTVEKSEKLAVYDSLDSDVVKSYLEFSLASLIFYT 240

Query:   234 MKEG 237
             MKEG
Sbjct:   241 MKEG 244
GO:0008553 "hydrogen-exporting ATPase activity, phosphorylative mechanism" evidence=ISS;NAS
GO:0015992 "proton transport" evidence=ISS
GO:0000275 "mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)" evidence=ISS
GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=IEA
GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA
GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA
GO:0006911 "phagocytosis, engulfment" evidence=IMP
GO:0005811 "lipid particle" evidence=IDA
UNIPROTKB|J9NZA4 J9NZA4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|H9KZF8 ATP5C1 "ATP synthase subunit gamma" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-8901 atp5c1 "ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
WB|WBGene00022089 Y69A2AR.18 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|P36542 ATP5C1 "ATP synthase subunit gamma, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q6PCU0 Atp5c1 "ATP synthase gamma chain" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q5RBS9 ATP5C1 "ATP synthase subunit gamma, mitochondrial" [Pongo abelii (taxid:9601)] Back     alignment and assigned GO terms
UNIPROTKB|P05631 ATP5C1 "ATP synthase subunit gamma, mitochondrial" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q4R5B0 ATP5C1 "ATP synthase subunit gamma, mitochondrial" [Macaca fascicularis (taxid:9541)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q5RBS9ATPG_PONABNo assigned EC number0.51200.57000.7811yesN/A
P36542ATPG_HUMANNo assigned EC number0.51610.57000.7785yesN/A
P05631ATPG_BOVINNo assigned EC number0.50800.57000.7785yesN/A
O01666ATPG_DROMENo assigned EC number0.64750.57980.7946yesN/A
P35435ATPG_RATNo assigned EC number0.52030.52570.7838yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query407
cd12151282 cd12151, F1-ATPase_gamma, mitochondrial ATP syntha 2e-54
cd12151282 cd12151, F1-ATPase_gamma, mitochondrial ATP syntha 5e-53
pfam00231288 pfam00231, ATP-synt, ATP synthase 1e-49
TIGR01146286 TIGR01146, ATPsyn_F1gamma, ATP synthase, F1 gamma 2e-49
TIGR01146286 TIGR01146, ATPsyn_F1gamma, ATP synthase, F1 gamma 3e-48
pfam00231288 pfam00231, ATP-synt, ATP synthase 3e-45
PRK05621284 PRK05621, PRK05621, F0F1 ATP synthase subunit gamm 1e-39
COG0224287 COG0224, AtpG, F0F1-type ATP synthase, gamma subun 7e-36
PRK05621284 PRK05621, PRK05621, F0F1 ATP synthase subunit gamm 8e-34
COG0224287 COG0224, AtpG, F0F1-type ATP synthase, gamma subun 2e-31
PRK13423288 PRK13423, PRK13423, F0F1 ATP synthase subunit gamm 1e-24
PRK14111290 PRK14111, PRK14111, F0F1 ATP synthase subunit gamm 6e-23
PRK13423288 PRK13423, PRK13423, F0F1 ATP synthase subunit gamm 1e-19
PRK14110291 PRK14110, PRK14110, F0F1 ATP synthase subunit gamm 7e-19
PRK14111290 PRK14111, PRK14111, F0F1 ATP synthase subunit gamm 1e-18
PRK13424291 PRK13424, PRK13424, F0F1 ATP synthase subunit gamm 2e-18
PRK13425291 PRK13425, PRK13425, F0F1 ATP synthase subunit gamm 2e-17
PRK13425291 PRK13425, PRK13425, F0F1 ATP synthase subunit gamm 6e-15
PRK13427289 PRK13427, PRK13427, F0F1 ATP synthase subunit gamm 8e-14
PRK13426291 PRK13426, PRK13426, F0F1 ATP synthase subunit gamm 2e-13
PRK14110291 PRK14110, PRK14110, F0F1 ATP synthase subunit gamm 2e-12
PRK13427289 PRK13427, PRK13427, F0F1 ATP synthase subunit gamm 4e-12
PRK13426291 PRK13426, PRK13426, F0F1 ATP synthase subunit gamm 4e-11
PRK13422298 PRK13422, PRK13422, F0F1 ATP synthase subunit gamm 4e-11
TIGR03323285 TIGR03323, alt_F1F0_F1_gam, alternate F1F0 ATPase, 2e-09
PRK13424291 PRK13424, PRK13424, F0F1 ATP synthase subunit gamm 3e-09
PRK13422298 PRK13422, PRK13422, F0F1 ATP synthase subunit gamm 6e-07
>gnl|CDD|213394 cd12151, F1-ATPase_gamma, mitochondrial ATP synthase gamma subunit Back     alignment and domain information 
 Score =  181 bits (462), Expect = 2e-54
 Identities = 70/179 (39%), Positives = 100/179 (55%), Gaps = 10/179 (5%)

Query: 235 KEGDKVLVITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQETSKY---NFT 291
            +G +V +I +G K R  L+R  G NI L  +++G  P  F  AS + +    +      
Sbjct: 105 ADGKEVKLIVVGKKGRDYLKRR-GYNIALPFSDIGDDPTYFEAASIIEELILDFLNGEID 163

Query: 292 SGKIIYNKFKSVVSYTTSDLPIFSLASVTAAPKLGVYDSL------DADVIQSYLEFSMA 345
              IIYNKFKS +S       +  L       +     S         +V+ + L F +A
Sbjct: 164 EVYIIYNKFKSAISQEPVVEQLLPLDKEEEEEESEGSRSDYIFEPDPEEVLDALLPFYLA 223

Query: 346 AMLYYAMKEGACSEQSSRMTSMDNASKNAGEMIEKLTLTFNRTRQAVITRELIEIISGA 404
           ++LY A+ E   SEQ++RMT+MDNA+ NAGE+I+KLTL +NR RQA IT+ELIEI+SGA
Sbjct: 224 SLLYRALLESLASEQAARMTAMDNATDNAGELIDKLTLEYNRARQAAITQELIEIVSGA 282

The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain of F-ATPases is composed of alpha, beta, gamma, delta, and epsilon (not present in bacteria) subunits with a stoichiometry of 3:3:1:1:1. Alpha and beta subunit form the globular catalytic moiety, a hexameric ring of alternating subunits. Gamma, delta and epsilon subunits form a stalk, connecting F1 to F0, the integral membrane proton translocating domain. Length = 282
>gnl|CDD|213394 cd12151, F1-ATPase_gamma, mitochondrial ATP synthase gamma subunit Back     alignment and domain information
>gnl|CDD|215808 pfam00231, ATP-synt, ATP synthase Back     alignment and domain information
>gnl|CDD|233292 TIGR01146, ATPsyn_F1gamma, ATP synthase, F1 gamma subunit Back     alignment and domain information
>gnl|CDD|233292 TIGR01146, ATPsyn_F1gamma, ATP synthase, F1 gamma subunit Back     alignment and domain information
>gnl|CDD|215808 pfam00231, ATP-synt, ATP synthase Back     alignment and domain information
>gnl|CDD|235535 PRK05621, PRK05621, F0F1 ATP synthase subunit gamma; Validated Back     alignment and domain information
>gnl|CDD|223302 COG0224, AtpG, F0F1-type ATP synthase, gamma subunit [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|235535 PRK05621, PRK05621, F0F1 ATP synthase subunit gamma; Validated Back     alignment and domain information
>gnl|CDD|223302 COG0224, AtpG, F0F1-type ATP synthase, gamma subunit [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|237384 PRK13423, PRK13423, F0F1 ATP synthase subunit gamma; Provisional Back     alignment and domain information
>gnl|CDD|184515 PRK14111, PRK14111, F0F1 ATP synthase subunit gamma; Provisional Back     alignment and domain information
>gnl|CDD|237384 PRK13423, PRK13423, F0F1 ATP synthase subunit gamma; Provisional Back     alignment and domain information
>gnl|CDD|184514 PRK14110, PRK14110, F0F1 ATP synthase subunit gamma; Provisional Back     alignment and domain information
>gnl|CDD|184515 PRK14111, PRK14111, F0F1 ATP synthase subunit gamma; Provisional Back     alignment and domain information
>gnl|CDD|172047 PRK13424, PRK13424, F0F1 ATP synthase subunit gamma; Provisional Back     alignment and domain information
>gnl|CDD|139564 PRK13425, PRK13425, F0F1 ATP synthase subunit gamma; Provisional Back     alignment and domain information
>gnl|CDD|139564 PRK13425, PRK13425, F0F1 ATP synthase subunit gamma; Provisional Back     alignment and domain information
>gnl|CDD|172049 PRK13427, PRK13427, F0F1 ATP synthase subunit gamma; Provisional Back     alignment and domain information
>gnl|CDD|237385 PRK13426, PRK13426, F0F1 ATP synthase subunit gamma; Provisional Back     alignment and domain information
>gnl|CDD|184514 PRK14110, PRK14110, F0F1 ATP synthase subunit gamma; Provisional Back     alignment and domain information
>gnl|CDD|172049 PRK13427, PRK13427, F0F1 ATP synthase subunit gamma; Provisional Back     alignment and domain information
>gnl|CDD|237385 PRK13426, PRK13426, F0F1 ATP synthase subunit gamma; Provisional Back     alignment and domain information
>gnl|CDD|184046 PRK13422, PRK13422, F0F1 ATP synthase subunit gamma; Provisional Back     alignment and domain information
>gnl|CDD|211807 TIGR03323, alt_F1F0_F1_gam, alternate F1F0 ATPase, F1 subunit gamma Back     alignment and domain information
>gnl|CDD|172047 PRK13424, PRK13424, F0F1 ATP synthase subunit gamma; Provisional Back     alignment and domain information
>gnl|CDD|184046 PRK13422, PRK13422, F0F1 ATP synthase subunit gamma; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 407
COG0224287 AtpG F0F1-type ATP synthase, gamma subunit [Energy 100.0
PRK13427289 F0F1 ATP synthase subunit gamma; Provisional 100.0
PRK13422298 F0F1 ATP synthase subunit gamma; Provisional 100.0
PRK14111290 F0F1 ATP synthase subunit gamma; Provisional 100.0
PRK13425291 F0F1 ATP synthase subunit gamma; Provisional 100.0
PRK13423288 F0F1 ATP synthase subunit gamma; Provisional 100.0
KOG1531|consensus304 100.0
PRK13424291 F0F1 ATP synthase subunit gamma; Provisional 100.0
PF00231290 ATP-synt: ATP synthase This Pfam entry corresponds 100.0
PRK13426291 F0F1 ATP synthase subunit gamma; Provisional 100.0
PRK14110291 F0F1 ATP synthase subunit gamma; Provisional 100.0
TIGR01146287 ATPsyn_F1gamma ATP synthase, F1 gamma subunit. Thi 100.0
PRK05621284 F0F1 ATP synthase subunit gamma; Validated 100.0
TIGR03323285 alt_F1F0_F1_gam alternate F1F0 ATPase, F1 subunit 100.0
KOG1531|consensus304 99.76
COG0224287 AtpG F0F1-type ATP synthase, gamma subunit [Energy 99.75
PRK13427289 F0F1 ATP synthase subunit gamma; Provisional 99.67
PRK13423288 F0F1 ATP synthase subunit gamma; Provisional 99.66
PRK14110291 F0F1 ATP synthase subunit gamma; Provisional 99.66
PRK13422298 F0F1 ATP synthase subunit gamma; Provisional 99.65
PRK14111290 F0F1 ATP synthase subunit gamma; Provisional 99.65
TIGR03323285 alt_F1F0_F1_gam alternate F1F0 ATPase, F1 subunit 99.65
PRK13425291 F0F1 ATP synthase subunit gamma; Provisional 99.65
PRK13426291 F0F1 ATP synthase subunit gamma; Provisional 99.64
PRK13424291 F0F1 ATP synthase subunit gamma; Provisional 99.64
TIGR01146287 ATPsyn_F1gamma ATP synthase, F1 gamma subunit. Thi 99.63
PRK05621284 F0F1 ATP synthase subunit gamma; Validated 99.59
PF00231290 ATP-synt: ATP synthase This Pfam entry corresponds 99.58
>COG0224 AtpG F0F1-type ATP synthase, gamma subunit [Energy production and conversion] Back     alignment and domain information 
Probab=100.00  E-value=1.4e-72  Score=549.66  Aligned_cols=268  Identities=34%  Similarity=0.536  Sum_probs=238.4

Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhhcc-----cCCC---CCCCCCcEEEEEEcC
Q psy9619          24 KAISIRLKSVKNIQKITQSMKMVSAAKYTRAERELKAAKPIGAGASAFYSKAE-----VTTP---EGTESPKELLIAVTS   95 (407)
Q Consensus        24 keir~RI~Sv~~t~kITkAMkmVAaaKlrka~~~~~~~r~Y~~~i~~~l~~~~-----~~~p---~~~~~~~~~~IvitS   95 (407)
                      ++||+||+||++|+||||||+|||+||++|+|.++.+.+||++.+.+++.++.     ..||   ..++.+++++|||||
T Consensus         1 keik~kI~Svk~t~KITkAM~mVaasKl~kaq~~~~a~~pY~e~i~~vl~~l~~~~~~~~~p~~~~~~e~kr~~~IviTS   80 (287)
T COG0224           1 KEIRRKIKSVKNTQKITKAMEMVAASKLRKAQERAEAARPYAEKIRKVLGHLASANLELDHPLLKPTREVKRVLYIVITS   80 (287)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhcccccCCcccccccCCCceEEEEEec
Confidence            58999999999999999999999999999999999999999999999998863     2456   335688899999999


Q ss_pred             CccccchhhHHHHHHHHHHHHhc---CCcEEEEEEccccHHHHHHhhCCceeEeecccCCCCCChhhhHHHHHHhhhccc
Q psy9619          96 DRGLCGAVHTSVARWIRNELQTK---GDKVLVITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQETSKYNF  172 (407)
Q Consensus        96 DrGLCG~fN~~i~k~~~~~l~~~---~~~~~li~IG~Kg~~~l~~~~~~~i~~~~~~~~~~~~~~~~a~~i~~~~~~~~~  172 (407)
                      |||||||||+||+|.+...++..   +.++.+++||+||.++|++ .|.++..++.+++ +.|+|+.+..+++.+++.  
T Consensus        81 DrGLcG~~Nsni~k~~~~~i~~~~~~~~~~~li~iG~Kg~~~f~~-~~~~i~~~~~~l~-~~p~~~~~~~i~~~~~~~--  156 (287)
T COG0224          81 DRGLCGGFNSNIFKKVENLIKELKNKGKEVKLILIGKKGIDFFKK-RGYNILESFTGLG-DNPSFEEAIQIADKILDA--  156 (287)
T ss_pred             CcchhhhhhHHHHHHHHHHHHhhhccCCceEEEEEchHHHHHHHh-cCcchhhHhhccc-cCCCHHHHHHHHHHHHHH--
Confidence            99999999999999999887653   6678899999999999998 5999999999998 559999999988776430  


Q ss_pred             ceEEEEEeeceecccccccccccccccccccCCCCCcccCChHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhcchhHHH
Q psy9619         173 TSGKIIYNKFKSVVSYTTSDLPIFSLASVTAAPKLGVYDSLDADVIQSYLEFSMAAMLYYAMKEGDKVLVITIGDKSRAI  252 (407)
Q Consensus       173 ~~~~i~y~~f~~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~~~e~~~~~~~~ig~k~~~i  252 (407)
                                                                                                      
T Consensus       157 --------------------------------------------------------------------------------  156 (287)
T COG0224         157 --------------------------------------------------------------------------------  156 (287)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHhhchhhhhhhhhcCCCCcchhhhhhhhhhhccCccceEEEEEeecccccccccccccccccccccc-----CC--CC
Q psy9619         253 LQRLYGNNIILAANEVGRRPPTFLDASKVAQETSKYNFTSGKIIYNKFKSVVSYTTSDLPIFSLASVTA-----AP--KL  325 (407)
Q Consensus       253 l~~~~~~~~~~~~~E~~~r~~~~~~a~~~a~~~~~~~i~~l~l~yNr~rq~is~~~~~~~llP~~~~~~-----~~--~~  325 (407)
                          |                            ..+.+|+++++||+|.+.++++|+..+|+|++..+.     .+  ..
T Consensus       157 ----~----------------------------~~g~~d~v~l~yn~f~n~~sq~~~~~~llP~~~~~~~~~~~~~~~~~  204 (287)
T COG0224         157 ----F----------------------------LEGEIDELYLVYNKFKNALSQEPTVQQLLPLDKIEDEAEEEEPGLWD  204 (287)
T ss_pred             ----H----------------------------hCCCCceEEEEecccccceeeeeeeEEEecCCcccchhhhccccccc
Confidence                0                            013788888888888888888888888888864321     12  25


Q ss_pred             CcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHhHHHHHHHHHHHhhhc
Q psy9619         326 GVYDSLDADVIQSYLEFSMAAMLYYAMKEGACSEQSSRMTSMDNASKNAGEMIEKLTLTFNRTRQAVITRELIEIISGAS  405 (407)
Q Consensus       326 ~~~e~~~~~ll~~ll~~yl~~~Ly~alleS~aSE~aaRm~AM~~At~Na~eli~~L~l~yNr~RQa~IT~EL~EIVsGa~  405 (407)
                      +.|||+++++++.|+|.|+.+.||+|++||.||||+|||+||++|||||+|||++|++.|||+||++|||||+|||+||+
T Consensus       205 ~efEpd~e~il~~Ll~~Y~~~~iy~alles~asE~aaRm~AM~~ATdNA~~lI~~l~l~yNk~RQa~ITqEL~EIV~Ga~  284 (287)
T COG0224         205 YEFEPDAEEILETLLPRYLESQLYGALLESKASEHAARMTAMKNATDNAGDLIKELTLVYNKARQAAITQELIEIVGGAE  284 (287)
T ss_pred             eeeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CC
Q psy9619         406 AL  407 (407)
Q Consensus       406 Al  407 (407)
                      ||
T Consensus       285 AL  286 (287)
T COG0224         285 AL  286 (287)
T ss_pred             hh
Confidence            97

>PRK13427 F0F1 ATP synthase subunit gamma; Provisional Back     alignment and domain information
>PRK13422 F0F1 ATP synthase subunit gamma; Provisional Back     alignment and domain information
>PRK14111 F0F1 ATP synthase subunit gamma; Provisional Back     alignment and domain information
>PRK13425 F0F1 ATP synthase subunit gamma; Provisional Back     alignment and domain information
>PRK13423 F0F1 ATP synthase subunit gamma; Provisional Back     alignment and domain information
>KOG1531|consensus Back     alignment and domain information
>PRK13424 F0F1 ATP synthase subunit gamma; Provisional Back     alignment and domain information
>PF00231 ATP-synt: ATP synthase This Pfam entry corresponds to chain g; InterPro: IPR000131 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>PRK13426 F0F1 ATP synthase subunit gamma; Provisional Back     alignment and domain information
>PRK14110 F0F1 ATP synthase subunit gamma; Provisional Back     alignment and domain information
>TIGR01146 ATPsyn_F1gamma ATP synthase, F1 gamma subunit Back     alignment and domain information
>PRK05621 F0F1 ATP synthase subunit gamma; Validated Back     alignment and domain information
>TIGR03323 alt_F1F0_F1_gam alternate F1F0 ATPase, F1 subunit gamma Back     alignment and domain information
>KOG1531|consensus Back     alignment and domain information
>COG0224 AtpG F0F1-type ATP synthase, gamma subunit [Energy production and conversion] Back     alignment and domain information
>PRK13427 F0F1 ATP synthase subunit gamma; Provisional Back     alignment and domain information
>PRK13423 F0F1 ATP synthase subunit gamma; Provisional Back     alignment and domain information
>PRK14110 F0F1 ATP synthase subunit gamma; Provisional Back     alignment and domain information
>PRK13422 F0F1 ATP synthase subunit gamma; Provisional Back     alignment and domain information
>PRK14111 F0F1 ATP synthase subunit gamma; Provisional Back     alignment and domain information
>TIGR03323 alt_F1F0_F1_gam alternate F1F0 ATPase, F1 subunit gamma Back     alignment and domain information
>PRK13425 F0F1 ATP synthase subunit gamma; Provisional Back     alignment and domain information
>PRK13426 F0F1 ATP synthase subunit gamma; Provisional Back     alignment and domain information
>PRK13424 F0F1 ATP synthase subunit gamma; Provisional Back     alignment and domain information
>TIGR01146 ATPsyn_F1gamma ATP synthase, F1 gamma subunit Back     alignment and domain information
>PRK05621 F0F1 ATP synthase subunit gamma; Validated Back     alignment and domain information
>PF00231 ATP-synt: ATP synthase This Pfam entry corresponds to chain g; InterPro: IPR000131 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query407
2w6e_G298 Low Resolution Structures Of Bovine Mitochondrial F 2e-67
2w6e_G298 Low Resolution Structures Of Bovine Mitochondrial F 1e-56
2jdi_G273 Ground State Structure Of F1-Atpase From Bovine Hea 2e-64
2jdi_G273 Ground State Structure Of F1-Atpase From Bovine Hea 1e-56
1cow_G272 Bovine Mitochondrial F1-Atpase Complexed With Aurov 2e-64
1cow_G272 Bovine Mitochondrial F1-Atpase Complexed With Aurov 1e-56
2f43_G273 Rat Liver F1-atpase Length = 273 2e-63
2f43_G273 Rat Liver F1-atpase Length = 273 3e-55
1mab_G270 Rat Liver F1-Atpase Length = 270 1e-61
1mab_G270 Rat Liver F1-Atpase Length = 270 4e-55
2xok_G311 Refined Structure Of Yeast F1c10 Atpase Complex To 1e-35
2xok_G311 Refined Structure Of Yeast F1c10 Atpase Complex To 1e-29
2hld_G278 Crystal Structure Of Yeast Mitochondrial F1-Atpase 4e-35
2hld_G278 Crystal Structure Of Yeast Mitochondrial F1-Atpase 1e-29
3oe7_G278 Structure Of Four Mutant Forms Of Yeast F1 Atpase: 4e-35
3oe7_G278 Structure Of Four Mutant Forms Of Yeast F1 Atpase: 5e-29
1ohh_G100 Bovine Mitochondrial F1-Atpase Complexed With The I 2e-19
2qe7_G286 Crystal Structure Of The F1-Atpase From The Thermoa 1e-13
3oaa_G286 Structure Of The E.Coli F1-Atp Synthase Inhibited B 5e-10
1fs0_G230 Complex Of GammaEPSILON ATP SYNTHASE FROM E.COLI Le 1e-04
>pdb|2W6E|G Chain G, Low Resolution Structures Of Bovine Mitochondrial F1-Atpase During Controlled Dehydration: Hydration State 1. Length = 298 Back     alignment and structure 
Iteration: 1

 Score =  252 bits (644), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 126/248 (50%), Positives = 177/248 (71%), Gaps = 16/248 (6%)
Query: 1   MFSKTAL-------LVPQCMQQQTRNMATLKAISIRLKSVKNIQKITQSMKMVSAAKYTR 53
           MFS+  +       + PQ +Q   RNMATLK I+ RLKS+KNIQKIT+SMKMV+AAKY R
Sbjct: 1   MFSRAGVAGLSAWTVQPQWIQ--VRNMATLKDITRRLKSIKNIQKITKSMKMVAAAKYAR 58
Query: 54  AERELKAAKPIGAGASAFYSKAEVTTPEGTESPKELLIAVTSDRGLCGAVHTSVARWIRN 113
           AERELK A+  G G+ A Y KA++ TPE  +  K L+I V+SDRGLCGA+H+SVA+ +++
Sbjct: 59  AERELKPARVYGVGSLALYEKADIKTPE--DKKKHLIIGVSSDRGLCGAIHSSVAKQMKS 116
Query: 114 E---LQTKGDKVLVITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQE--TS 168
           E   L   G +V +I +GDK R+IL R + +  ++   EVGRRPPTF DAS +A E   S
Sbjct: 117 EAANLAAAGKEVKIIGVGDKIRSILHRTHSDQFLVTFKEVGRRPPTFGDASVIALELLNS 176
Query: 169 KYNFTSGKIIYNKFKSVVSYTTSDLPIFSLASVTAAPKLGVYDSLDADVIQSYLEFSMAA 228
            Y F  G II+N+F+SV+SY T + PIFSL ++++A  + +YD +DADV+++Y E+S+A 
Sbjct: 177 GYEFDEGSIIFNRFRSVISYKTEEKPIFSLDTISSAESMSIYDDIDADVLRNYQEYSLAN 236
Query: 229 MLYYAMKE 236
           ++YY++KE
Sbjct: 237 IIYYSLKE 244
>pdb|2W6E|G Chain G, Low Resolution Structures Of Bovine Mitochondrial F1-Atpase During Controlled Dehydration: Hydration State 1. Length = 298 Back     alignment and structure
>pdb|2JDI|G Chain G, Ground State Structure Of F1-Atpase From Bovine Heart Mitochondria (Bovine F1-Atpase Crystallised In The Absence Of Azide) Length = 273 Back     alignment and structure
>pdb|2JDI|G Chain G, Ground State Structure Of F1-Atpase From Bovine Heart Mitochondria (Bovine F1-Atpase Crystallised In The Absence Of Azide) Length = 273 Back     alignment and structure
>pdb|1COW|G Chain G, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B Length = 272 Back     alignment and structure
>pdb|1COW|G Chain G, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B Length = 272 Back     alignment and structure
>pdb|2F43|G Chain G, Rat Liver F1-atpase Length = 273 Back     alignment and structure
>pdb|2F43|G Chain G, Rat Liver F1-atpase Length = 273 Back     alignment and structure
>pdb|1MAB|G Chain G, Rat Liver F1-Atpase Length = 270 Back     alignment and structure
>pdb|1MAB|G Chain G, Rat Liver F1-Atpase Length = 270 Back     alignment and structure
>pdb|2XOK|G Chain G, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A Resolution Length = 311 Back     alignment and structure
>pdb|2XOK|G Chain G, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A Resolution Length = 311 Back     alignment and structure
>pdb|2HLD|G Chain G, Crystal Structure Of Yeast Mitochondrial F1-Atpase Length = 278 Back     alignment and structure
>pdb|2HLD|G Chain G, Crystal Structure Of Yeast Mitochondrial F1-Atpase Length = 278 Back     alignment and structure
>pdb|3OE7|G Chain G, Structure Of Four Mutant Forms Of Yeast F1 Atpase: Gamma-I270t Length = 278 Back     alignment and structure
>pdb|3OE7|G Chain G, Structure Of Four Mutant Forms Of Yeast F1 Atpase: Gamma-I270t Length = 278 Back     alignment and structure
>pdb|1OHH|G Chain G, Bovine Mitochondrial F1-Atpase Complexed With The Inhibitor Protein If1 Length = 100 Back     alignment and structure
>pdb|2QE7|G Chain G, Crystal Structure Of The F1-Atpase From The Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1 Length = 286 Back     alignment and structure
>pdb|3OAA|G Chain G, Structure Of The E.Coli F1-Atp Synthase Inhibited By Subunit Epsilon Length = 286 Back     alignment and structure
>pdb|1FS0|G Chain G, Complex Of GammaEPSILON ATP SYNTHASE FROM E.COLI Length = 230 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query407
2xok_G311 ATP synthase subunit gamma, mitochondrial; hydrola 3e-70
2xok_G311 ATP synthase subunit gamma, mitochondrial; hydrola 4e-67
2ck3_G272 ATP synthase subunit gamma\, mitochondrial; hydrol 4e-70
2ck3_G272 ATP synthase subunit gamma\, mitochondrial; hydrol 2e-69
3oee_G278 ATP synthase subunit gamma; ATP phosphatase, F1F0 1e-67
3oee_G278 ATP synthase subunit gamma; ATP phosphatase, F1F0 1e-66
3oaa_G286 ATP synthase gamma chain; rossmann fold, hydrolase 8e-42
3oaa_G286 ATP synthase gamma chain; rossmann fold, hydrolase 2e-33
2qe7_G286 ATP synthase subunit gamma; blockage of ATP hydrol 6e-40
2qe7_G286 ATP synthase subunit gamma; blockage of ATP hydrol 9e-34
1fs0_G230 ATP synthase gamma subunit; coiled coil, epsilon, 2e-26
1fs0_G230 ATP synthase gamma subunit; coiled coil, epsilon, 1e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-06
>2xok_G ATP synthase subunit gamma, mitochondrial; hydrolase, ATP-binding, F(O), F(1), mitochondr inner membrane, transmembrane; HET: ANP; 3.01A {Saccharomyces cerevisiae} Length = 311 Back     alignment and structure
 Score =  222 bits (568), Expect = 3e-70
 Identities = 80/242 (33%), Positives = 137/242 (56%), Gaps = 10/242 (4%)

Query: 5   TALLVPQCMQQQTRNMATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERELKAAKPI 64
            A +         R  ATLK + +RLKS+KNI+KIT++MK+V++ + ++AE+   +AK +
Sbjct: 18  QAQVGILYKTNPVRTYATLKEVEMRLKSIKNIEKITKTMKIVASTRLSKAEKAKISAKKM 77

Query: 65  GAGASAFYSKAEVTTPE----GTESPKELLIAVTSDRGLCGAVHTSVARWIRNELQTKGD 120
                 FY  AE    +     T +PKEL++A+TSD+GLCG++H+ +A+ +R  L     
Sbjct: 78  DEAEQLFYKNAETKNLDVEATETGAPKELIVAITSDKGLCGSIHSQLAKAVRRHLN-DQP 136

Query: 121 KVLVITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQET----SKYNFTSGK 176
              ++TIGDK +  L R + NNI L+ N +G+  PTF +++ +A +         +    
Sbjct: 137 NADIVTIGDKIKMQLLRTHPNNIKLSINGIGKDAPTFQESALIADKLLSVMKAGTYPKIS 196

Query: 177 IIYNKFKSVVSYTTSDLPIFSLASVTAAPKLGVYD-SLDADVIQSYLEFSMAAMLYYAMK 235
           I YN   S +S+  S+ PIF+  ++  +P  G ++   DA+V +   E+++A  +  AM 
Sbjct: 197 IFYNDPVSSLSFEPSEKPIFNAKTIEQSPSFGKFEIDTDANVPRDLFEYTLANQMLTAMA 256

Query: 236 EG 237
           +G
Sbjct: 257 QG 258
>2xok_G ATP synthase subunit gamma, mitochondrial; hydrolase, ATP-binding, F(O), F(1), mitochondr inner membrane, transmembrane; HET: ANP; 3.01A {Saccharomyces cerevisiae} Length = 311 Back     alignment and structure
>2ck3_G ATP synthase subunit gamma\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: c.49.2.1 PDB: 1cow_G* 1bmf_G* 1e1q_G* 1e1r_G* 1efr_G* 1e79_G* 1h8h_G* 1nbm_G* 1ohh_G* 1qo1_G 1w0j_G* 1w0k_G* 1h8e_G* 2jiz_G* 2jj1_G* 2jj2_G* 2v7q_G* 2wss_G* 2xnd_G* 2w6j_G ... Length = 272 Back     alignment and structure
>2ck3_G ATP synthase subunit gamma\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: c.49.2.1 PDB: 1cow_G* 1bmf_G* 1e1q_G* 1e1r_G* 1efr_G* 1e79_G* 1h8h_G* 1nbm_G* 1ohh_G* 1qo1_G 1w0j_G* 1w0k_G* 1h8e_G* 2jiz_G* 2jj1_G* 2jj2_G* 2v7q_G* 2wss_G* 2xnd_G* 2w6j_G ... Length = 272 Back     alignment and structure
>3oee_G ATP synthase subunit gamma; ATP phosphatase, F1F0 ATPase, ATP synthesis, H ADP, PO4, mitochondria; HET: ANP; 2.74A {Saccharomyces cerevisiae} PDB: 2wpd_G* 3fks_G 2hld_G* 3oeh_G* 3ofn_G* 3zry_G* 3oe7_G* Length = 278 Back     alignment and structure
>3oee_G ATP synthase subunit gamma; ATP phosphatase, F1F0 ATPase, ATP synthesis, H ADP, PO4, mitochondria; HET: ANP; 2.74A {Saccharomyces cerevisiae} PDB: 2wpd_G* 3fks_G 2hld_G* 3oeh_G* 3ofn_G* 3zry_G* 3oe7_G* Length = 278 Back     alignment and structure
>3oaa_G ATP synthase gamma chain; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} Length = 286 Back     alignment and structure
>3oaa_G ATP synthase gamma chain; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} Length = 286 Back     alignment and structure
>2qe7_G ATP synthase subunit gamma; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} Length = 286 Back     alignment and structure
>2qe7_G ATP synthase subunit gamma; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} Length = 286 Back     alignment and structure
>1fs0_G ATP synthase gamma subunit; coiled coil, epsilon, hydrolase; 2.10A {Escherichia coli} SCOP: c.49.2.1 Length = 230 Back     alignment and structure
>1fs0_G ATP synthase gamma subunit; coiled coil, epsilon, hydrolase; 2.10A {Escherichia coli} SCOP: c.49.2.1 Length = 230 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query407
3oaa_G286 ATP synthase gamma chain; rossmann fold, hydrolase 100.0
2xok_G311 ATP synthase subunit gamma, mitochondrial; hydrola 100.0
3oee_G278 ATP synthase subunit gamma; ATP phosphatase, F1F0 100.0
2ck3_G272 ATP synthase subunit gamma\, mitochondrial; hydrol 100.0
2qe7_G286 ATP synthase subunit gamma; blockage of ATP hydrol 100.0
1fs0_G230 ATP synthase gamma subunit; coiled coil, epsilon, 100.0
3oee_G278 ATP synthase subunit gamma; ATP phosphatase, F1F0 99.77
3oaa_G286 ATP synthase gamma chain; rossmann fold, hydrolase 99.75
2xok_G311 ATP synthase subunit gamma, mitochondrial; hydrola 99.74
2qe7_G286 ATP synthase subunit gamma; blockage of ATP hydrol 99.7
2ck3_G272 ATP synthase subunit gamma\, mitochondrial; hydrol 99.65
1fs0_G230 ATP synthase gamma subunit; coiled coil, epsilon, 99.35
>3oaa_G ATP synthase gamma chain; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} Back     alignment and structure
Probab=100.00  E-value=8.9e-75  Score=567.78  Aligned_cols=271  Identities=27%  Similarity=0.436  Sum_probs=235.4

Q ss_pred             ccHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhhcc-----cCCC--CCCCCCcEEEEEE
Q psy9619          21 ATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERELKAAKPIGAGASAFYSKAE-----VTTP--EGTESPKELLIAV   93 (407)
Q Consensus        21 a~lkeir~RI~Sv~~t~kITkAMkmVAaaKlrka~~~~~~~r~Y~~~i~~~l~~~~-----~~~p--~~~~~~~~~~Ivi   93 (407)
                      |++++||+||+||+||+|||+||||||+||+||||+++.+.|||++++.+++.++.     ..||  ..++.+++++|||
T Consensus         1 a~lkeIk~RI~Svk~t~kITkAMkmVAaaKlrkaq~~~~~~rpY~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~~Ivi   80 (286)
T 3oaa_G            1 AGAKEIRSKIASVQNTQKITKAMEMVAASKMRKSQDRMAASRPYAETMRKVIGHLAHGNLEYKHPYLEDRDVKRVGYLVV   80 (286)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTTCCSSCSCCCCSEEEEEEE
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhCccccCcccccCCCCcEEEEEE
Confidence            68999999999999999999999999999999999999999999999999988762     2355  3455788999999


Q ss_pred             cCCccccchhhHHHHHHHHHHHHh---cCCcEEEEEEccccHHHHHHhhCCceeEeecccCCCCCChhhhHHHHHHhhhc
Q psy9619          94 TSDRGLCGAVHTSVARWIRNELQT---KGDKVLVITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQETSKY  170 (407)
Q Consensus        94 tSDrGLCG~fN~~i~k~~~~~l~~---~~~~~~li~IG~Kg~~~l~~~~~~~i~~~~~~~~~~~~~~~~a~~i~~~~~~~  170 (407)
                      |||||||||||+||+|.+.+.+++   .++++.+++||+||.++|++. |.++...+.+++ +.|+|+++..+++.+++.
T Consensus        81 tSDrGLcG~fN~ni~k~~~~~i~~~~~~~~~~~l~~vG~Kg~~~~~~~-~~~i~~~~~~~~-~~p~~~~~~~i~~~~~~~  158 (286)
T 3oaa_G           81 STDRGLCGGLNINLFKKLLAEMKTWTDKGVQCDLAMIGSKGVSFFNSV-GGNVVAQVTGMG-DNPSLSELIGPVKVMLQA  158 (286)
T ss_dssp             CCSCCCSTTHHHHHHHHHHHHHHHHHTTTCEEEEEEESHHHHHHHHHH-CCCEEEEECCCT-TCCCHHHHHHHHHHHHHH
T ss_pred             eCCcccccchhHHHHHHHHHHHHHHHhCCCceEEEEeeHHHHHHHHHc-CCCeEEeecccc-CCCCHHHHHHHHHHHHHH
Confidence            999999999999999999987764   366889999999999999875 778999998887 679999999887776421


Q ss_pred             ccceEEEEEeeceecccccccccccccccccccCCCCCcccCChHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhcchhH
Q psy9619         171 NFTSGKIIYNKFKSVVSYTTSDLPIFSLASVTAAPKLGVYDSLDADVIQSYLEFSMAAMLYYAMKEGDKVLVITIGDKSR  250 (407)
Q Consensus       171 ~~~~~~i~y~~f~~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~~~e~~~~~~~~ig~k~~  250 (407)
                                                                        +                             
T Consensus       159 --------------------------------------------------~-----------------------------  159 (286)
T 3oaa_G          159 --------------------------------------------------Y-----------------------------  159 (286)
T ss_dssp             --------------------------------------------------H-----------------------------
T ss_pred             --------------------------------------------------H-----------------------------
Confidence                                                              0                             


Q ss_pred             HHHHHhhchhhhhhhhhcCCCCcchhhhhhhhhhhccCccceEEEEEeeccccccccccccccccccccccC-----CCC
Q psy9619         251 AILQRLYGNNIILAANEVGRRPPTFLDASKVAQETSKYNFTSGKIIYNKFKSVVSYTTSDLPIFSLASVTAA-----PKL  325 (407)
Q Consensus       251 ~il~~~~~~~~~~~~~E~~~r~~~~~~a~~~a~~~~~~~i~~l~l~yNr~rq~is~~~~~~~llP~~~~~~~-----~~~  325 (407)
                                                        . .+.+|+++++||+|+++++|+|...+|||++..+..     ...
T Consensus       160 ----------------------------------~-~g~~d~v~lvyn~f~s~~~q~~~~~~lLPl~~~~~~~~~~~~~~  204 (286)
T 3oaa_G          160 ----------------------------------D-EGRLDKLYIVSNKFINTMSQVPTISQLLPLPASDDDDLKHKSWD  204 (286)
T ss_dssp             ----------------------------------H-TTSCSEEEEEEEEEEETTEEEEEEEECSSCCCCHHHHSCCCSCC
T ss_pred             ----------------------------------h-cCCCCEEEEEEcccccccccceeEEEecCCCcccccccccCCCC
Confidence                                              0 026777888888888877888888888887654321     135


Q ss_pred             CcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHhHHHHHHHHHHHhhhc
Q psy9619         326 GVYDSLDADVIQSYLEFSMAAMLYYAMKEGACSEQSSRMTSMDNASKNAGEMIEKLTLTFNRTRQAVITRELIEIISGAS  405 (407)
Q Consensus       326 ~~~e~~~~~ll~~ll~~yl~~~Ly~alleS~aSE~aaRm~AM~~At~Na~eli~~L~l~yNr~RQa~IT~EL~EIVsGa~  405 (407)
                      +.|||+++++|+.|+|.|+.+.||+|++||.||||+|||+||++|||||+|||++|+++|||+||++||+||+||||||+
T Consensus       205 ~~~Ep~~~~vl~~Llp~yl~~~iy~alles~aSE~aARm~AM~~At~NA~eli~~Ltl~yNr~RQa~IT~El~EIv~Ga~  284 (286)
T 3oaa_G          205 YLYEPDPKALLDTLLRRYVESQVYQGVVENLASEQAARMVAMKAATDNGGSLIKELQLVYNKARQASITQELTEIVSGAA  284 (286)
T ss_dssp             CEESSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             ceeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CC
Q psy9619         406 AL  407 (407)
Q Consensus       406 Al  407 (407)
                      ||
T Consensus       285 Al  286 (286)
T 3oaa_G          285 AV  286 (286)
T ss_dssp             --
T ss_pred             hC
Confidence            97
>2xok_G ATP synthase subunit gamma, mitochondrial; hydrolase, ATP-binding, F(O), F(1), mitochondr inner membrane, transmembrane; HET: ANP; 3.01A {Saccharomyces cerevisiae} Back     alignment and structure
>3oee_G ATP synthase subunit gamma; ATP phosphatase, F1F0 ATPase, ATP synthesis, H ADP, PO4, mitochondria; HET: ANP; 2.74A {Saccharomyces cerevisiae} SCOP: c.49.2.0 PDB: 2wpd_G* 3fks_G 2hld_G* 3oeh_G* 3ofn_G* 3zry_G* 4b2q_G* 3oe7_G* Back     alignment and structure
>2ck3_G ATP synthase subunit gamma\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: c.49.2.1 PDB: 1cow_G* 1bmf_G* 1e1q_G* 1e1r_G* 1efr_G* 1e79_G* 1h8h_G* 1nbm_G* 1ohh_G* 1qo1_G 1w0j_G* 1w0k_G* 1h8e_G* 2jiz_G* 2jj1_G* 2jj2_G* 2v7q_G* 2wss_G* 2xnd_G* 2w6j_G ... Back     alignment and structure
>2qe7_G ATP synthase subunit gamma; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} Back     alignment and structure
>1fs0_G ATP synthase gamma subunit; coiled coil, epsilon, hydrolase; 2.10A {Escherichia coli} SCOP: c.49.2.1 Back     alignment and structure
>3oee_G ATP synthase subunit gamma; ATP phosphatase, F1F0 ATPase, ATP synthesis, H ADP, PO4, mitochondria; HET: ANP; 2.74A {Saccharomyces cerevisiae} SCOP: c.49.2.0 PDB: 2wpd_G* 3fks_G 2hld_G* 3oeh_G* 3ofn_G* 3zry_G* 4b2q_G* 3oe7_G* Back     alignment and structure
>3oaa_G ATP synthase gamma chain; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} Back     alignment and structure
>2xok_G ATP synthase subunit gamma, mitochondrial; hydrolase, ATP-binding, F(O), F(1), mitochondr inner membrane, transmembrane; HET: ANP; 3.01A {Saccharomyces cerevisiae} Back     alignment and structure
>2qe7_G ATP synthase subunit gamma; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} Back     alignment and structure
>2ck3_G ATP synthase subunit gamma\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: c.49.2.1 PDB: 1cow_G* 1bmf_G* 1e1q_G* 1e1r_G* 1efr_G* 1e79_G* 1h8h_G* 1nbm_G* 1ohh_G* 1qo1_G 1w0j_G* 1w0k_G* 1h8e_G* 2jiz_G* 2jj1_G* 2jj2_G* 2v7q_G* 2wss_G* 2xnd_G* 2w6j_G ... Back     alignment and structure
>1fs0_G ATP synthase gamma subunit; coiled coil, epsilon, hydrolase; 2.10A {Escherichia coli} SCOP: c.49.2.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 407
d2jdig1272 c.49.2.1 (G:1-272) ATP synthase (F1-ATPase), gamma 1e-38
d2jdig1272 c.49.2.1 (G:1-272) ATP synthase (F1-ATPase), gamma 3e-32
d1fs0g_230 c.49.2.1 (G:) ATP synthase (F1-ATPase), gamma subu 4e-21
d1fs0g_230 c.49.2.1 (G:) ATP synthase (F1-ATPase), gamma subu 3e-09
>d2jdig1 c.49.2.1 (G:1-272) ATP synthase (F1-ATPase), gamma subunit {Cow (Bos taurus) [TaxId: 9913]} Length = 272 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Pyruvate kinase C-terminal domain-like
superfamily: ATP synthase (F1-ATPase), gamma subunit
family: ATP synthase (F1-ATPase), gamma subunit
domain: ATP synthase (F1-ATPase), gamma subunit
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  138 bits (347), Expect = 1e-38
 Identities = 101/181 (55%), Positives = 136/181 (75%), Gaps = 2/181 (1%)

Query: 229 MLYYAMKEGDKVLVITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQE--TS 286
                   G +V +I +GDK R+IL R + +  ++   EVGRRPPTF DAS +A E   S
Sbjct: 92  EAANLAAAGKEVKIIGVGDKIRSILHRTHSDQFLVTFKEVGRRPPTFGDASVIALELLNS 151

Query: 287 KYNFTSGKIIYNKFKSVVSYTTSDLPIFSLASVTAAPKLGVYDSLDADVIQSYLEFSMAA 346
            Y F  G II+N+F+SV+SY T + PIFSL ++++A  + +YD +DADV+++Y E+S+A 
Sbjct: 152 GYEFDEGSIIFNRFRSVISYKTEEKPIFSLDTISSAESMSIYDDIDADVLRNYQEYSLAN 211

Query: 347 MLYYAMKEGACSEQSSRMTSMDNASKNAGEMIEKLTLTFNRTRQAVITRELIEIISGASA 406
           ++YY++KE   SEQS+RMT+MDNASKNA EMI+KLTLTFNRTRQAVIT+ELIEIISGA+A
Sbjct: 212 IIYYSLKESTTSEQSARMTAMDNASKNASEMIDKLTLTFNRTRQAVITKELIEIISGAAA 271

Query: 407 L 407
           L
Sbjct: 272 L 272
>d2jdig1 c.49.2.1 (G:1-272) ATP synthase (F1-ATPase), gamma subunit {Cow (Bos taurus) [TaxId: 9913]} Length = 272 Back     information, alignment and structure
>d1fs0g_ c.49.2.1 (G:) ATP synthase (F1-ATPase), gamma subunit {Escherichia coli [TaxId: 562]} Length = 230 Back     information, alignment and structure
>d1fs0g_ c.49.2.1 (G:) ATP synthase (F1-ATPase), gamma subunit {Escherichia coli [TaxId: 562]} Length = 230 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query407
d2jdig1272 ATP synthase (F1-ATPase), gamma subunit {Cow (Bos 100.0
d1fs0g_230 ATP synthase (F1-ATPase), gamma subunit {Escherich 100.0
d2jdig1272 ATP synthase (F1-ATPase), gamma subunit {Cow (Bos 99.54
d1fs0g_230 ATP synthase (F1-ATPase), gamma subunit {Escherich 99.26
>d2jdig1 c.49.2.1 (G:1-272) ATP synthase (F1-ATPase), gamma subunit {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Pyruvate kinase C-terminal domain-like
superfamily: ATP synthase (F1-ATPase), gamma subunit
family: ATP synthase (F1-ATPase), gamma subunit
domain: ATP synthase (F1-ATPase), gamma subunit
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3.1e-70  Score=525.71  Aligned_cols=269  Identities=59%  Similarity=0.917  Sum_probs=170.9

Q ss_pred             ccHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhhcccCCCCCCCCCcEEEEEEcCCcccc
Q psy9619          21 ATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERELKAAKPIGAGASAFYSKAEVTTPEGTESPKELLIAVTSDRGLC  100 (407)
Q Consensus        21 a~lkeir~RI~Sv~~t~kITkAMkmVAaaKlrka~~~~~~~r~Y~~~i~~~l~~~~~~~p~~~~~~~~~~IvitSDrGLC  100 (407)
                      |||+|||+||+||++|+|||+||||||+||+||||+++.+.|||+.+...++.+.....|  ++.++.++||||||||||
T Consensus         1 A~Lkeik~RI~Sv~~t~kITkAMkmVAasKlrkaq~~~~~~r~Y~~~~~~~~~~~~~~~~--~~~~~~l~IvitSDrGLc   78 (272)
T d2jdig1           1 ATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAERELKPARVYGVGSLALYEKADIKTP--EDKKKHLIIGVSSDRGLC   78 (272)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---------------------CCCCBCCSCCCS
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHhHHhhccccchhc--cccccceeEEEecCCCCC
Confidence            689999999999999999999999999999999999999999999777766665433333  346778999999999999


Q ss_pred             chhhHHHHHHHHHHHHh---cCCcEEEEEEccccHHHHHHhhCCceeEeecccCCCCCChhhhHHHHHHhhhcccceEEE
Q psy9619         101 GAVHTSVARWIRNELQT---KGDKVLVITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQETSKYNFTSGKI  177 (407)
Q Consensus       101 G~fN~~i~k~~~~~l~~---~~~~~~li~IG~Kg~~~l~~~~~~~i~~~~~~~~~~~~~~~~a~~i~~~~~~~~~~~~~i  177 (407)
                      ||||++|+|.+.+.+..   .++++.++++|+||.+++.+.++..+...+...+..++++.++..+...+..        
T Consensus        79 G~fN~~iik~~~~~i~~~~~~~~~~~l~~~G~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--------  150 (272)
T d2jdig1          79 GAIHSSVAKQMKSEAANLAAAGKEVKIIGVGDKIRSILHRTHSDQFLVTFKEVGRRPPTFGDASVIALELLN--------  150 (272)
T ss_dssp             TTHHHHHC------------------CCCBSHHHHHHC----------CBCSCSSSCCCHHHHHHHHHHC----------
T ss_pred             CCccccHHHHHHHHHHHhhccCCceEEEecccchhhhhhhcccceeeeeeeecCCCCchhHHHHHHHHHHHH--------
Confidence            99999999999888754   2566778999999999998766777777777777667777766655433310        


Q ss_pred             EEeeceecccccccccccccccccccCCCCCcccCChHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhcchhHHHHHHhh
Q psy9619         178 IYNKFKSVVSYTTSDLPIFSLASVTAAPKLGVYDSLDADVIQSYLEFSMAAMLYYAMKEGDKVLVITIGDKSRAILQRLY  257 (407)
Q Consensus       178 ~y~~f~~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~~~e~~~~~~~~ig~k~~~il~~~~  257 (407)
                                                                                                      
T Consensus       151 --------------------------------------------------------------------------------  150 (272)
T d2jdig1         151 --------------------------------------------------------------------------------  150 (272)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             chhhhhhhhhcCCCCcchhhhhhhhhhhccCccceEEEEEeeccccccccccccccccccccccCCCCCcCCCCHHHHHH
Q psy9619         258 GNNIILAANEVGRRPPTFLDASKVAQETSKYNFTSGKIIYNKFKSVVSYTTSDLPIFSLASVTAAPKLGVYDSLDADVIQ  337 (407)
Q Consensus       258 ~~~~~~~~~E~~~r~~~~~~a~~~a~~~~~~~i~~l~l~yNr~rq~is~~~~~~~llP~~~~~~~~~~~~~e~~~~~ll~  337 (407)
                                                  ..+.+|+++++||+|.+.++++|...+++|.+..+.....+.|+|+++++|+
T Consensus       151 ----------------------------~~~~~d~v~i~y~~f~~~~~q~p~~~~l~p~~~~~~~~~~~~~~~~~~~vl~  202 (272)
T d2jdig1         151 ----------------------------SGYEFDEGSIIFNRFRSVISYKTEEKPIFSLDTISSAESMSIYDDIDADVLR  202 (272)
T ss_dssp             ------------------------------------CCCCCEECSSSCEECC----------------------------
T ss_pred             ----------------------------hhhhcceeEEEeecccccccccceeecccccccccccchhhhcccchHHHHH
Confidence                                        0126777888888888888888888888888766555566789999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHhHHHHHHHHHHHhhhcCC
Q psy9619         338 SYLEFSMAAMLYYAMKEGACSEQSSRMTSMDNASKNAGEMIEKLTLTFNRTRQAVITRELIEIISGASAL  407 (407)
Q Consensus       338 ~ll~~yl~~~Ly~alleS~aSE~aaRm~AM~~At~Na~eli~~L~l~yNr~RQa~IT~EL~EIVsGa~Al  407 (407)
                      .++|.||.+.||+|++||+||||+|||+||++|||||+||+++|+++|||+||++||+||+||||||+||
T Consensus       203 ~l~~~yl~~~ly~a~~es~aSE~aaRm~AM~~At~Na~eli~~L~~~yNr~RQ~~IT~El~EIv~GaeAl  272 (272)
T d2jdig1         203 NYQEYSLANIIYYSLKESTTSEQSARMTAMDNASKNASEMIDKLTLTFNRTRQAVITKELIEIISGAAAL  272 (272)
T ss_dssp             ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999997
>d1fs0g_ c.49.2.1 (G:) ATP synthase (F1-ATPase), gamma subunit {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2jdig1 c.49.2.1 (G:1-272) ATP synthase (F1-ATPase), gamma subunit {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1fs0g_ c.49.2.1 (G:) ATP synthase (F1-ATPase), gamma subunit {Escherichia coli [TaxId: 562]} Back     information, alignment and structure