Psyllid ID: psy9620
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 453 | 2.2.26 [Sep-21-2011] | |||||||
| P19109 | 719 | ATP-dependent RNA helicas | no | N/A | 0.825 | 0.520 | 0.545 | 1e-131 | |
| A5A6J2 | 614 | Probable ATP-dependent RN | yes | N/A | 0.898 | 0.662 | 0.510 | 1e-125 | |
| P17844 | 614 | Probable ATP-dependent RN | yes | N/A | 0.898 | 0.662 | 0.510 | 1e-125 | |
| Q61656 | 614 | Probable ATP-dependent RN | yes | N/A | 0.898 | 0.662 | 0.510 | 1e-124 | |
| Q5R4I9 | 614 | Probable ATP-dependent RN | yes | N/A | 0.871 | 0.643 | 0.505 | 1e-124 | |
| Q4R6M5 | 614 | Probable ATP-dependent RN | N/A | N/A | 0.898 | 0.662 | 0.508 | 1e-123 | |
| Q501J6 | 650 | Probable ATP-dependent RN | no | N/A | 0.825 | 0.575 | 0.520 | 1e-122 | |
| Q92841 | 729 | Probable ATP-dependent RN | no | N/A | 0.825 | 0.513 | 0.520 | 1e-122 | |
| Q4X195 | 547 | ATP-dependent RNA helicas | yes | N/A | 0.924 | 0.765 | 0.468 | 1e-118 | |
| Q6C4D4 | 552 | ATP-dependent RNA helicas | yes | N/A | 0.823 | 0.675 | 0.506 | 1e-118 |
| >sp|P19109|DDX17_DROME ATP-dependent RNA helicase p62 OS=Drosophila melanogaster GN=Rm62 PE=1 SV=3 | Back alignment and function desciption |
|---|
Score = 467 bits (1202), Expect = e-131, Method: Compositional matrix adjust.
Identities = 239/438 (54%), Positives = 302/438 (68%), Gaps = 64/438 (14%)
Query: 63 LRAIDWGNLPPFEKNFFHPSPSVLNRSPHEVQAFRDKHQMTLKGNAPNPITEFAEANFPD 122
+R +D+ NL PF+KNF+ P+V NRSP+EVQ +R++ ++T++G PNPI +F+E + PD
Sbjct: 231 MRPVDFSNLAPFKKNFYQEHPNVANRSPYEVQRYREEQEITVRGQVPNPIQDFSEVHLPD 290
Query: 123 YVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLK 182
YV+KE++RQG+ PT IQAQGWPIAMSGSN VG+A+TGSGKTL Y+LPAIVHIN+Q L+
Sbjct: 291 YVMKEIRRQGYKAPTAIQAQGWPIAMSGSNFVGIAKTGSGKTLGYILPAIVHINNQQPLQ 350
Query: 183 PGDGPIVLVLAPTRELAQ----------------------------QIQEVAR------- 207
GDGPI LVLAPTRELAQ Q++++ R
Sbjct: 351 RGDGPIALVLAPTRELAQQIQQVATEFGSSSYVRNTCVFGGAPKGGQMRDLQRGCEIVIA 410
Query: 208 ------DFGS--STYLRSTCVYGGASKG---------PQ---------PDRQVLMWSATW 241
DF S ST L+ C Y + PQ PDRQ LMWSATW
Sbjct: 411 TPGRLIDFLSAGSTNLKR-CTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLMWSATW 469
Query: 242 PREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDI--SSKD 299
P+EV++LAEDFL +YIQINIGSL LSANHNI+QVV+VC E KE KL LL+DI +S+
Sbjct: 470 PKEVKQLAEDFLGNYIQINIGSLELSANHNIRQVVDVCDEFSKEEKLKTLLSDIYDTSES 529
Query: 300 ENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDV 359
K IIF ETKR+VD + + I+++G IHGDKSQ ERD+VL+EFR+G++ ILVATDV
Sbjct: 530 PGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFVLREFRSGKSNILVATDV 589
Query: 360 AARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDLIDVL 419
AARGLDVD +K+VINFDYP NSEDYIHRIGRTGRS+ GTS+ FFT+ N++QAK L+DVL
Sbjct: 590 AARGLDVDGIKYVINFDYPQNSEDYIHRIGRTGRSNTKGTSFAFFTKNNAKQAKALVDVL 649
Query: 420 TESNHPVDPKLSALASRS 437
E+N ++P L LA S
Sbjct: 650 REANQEINPALENLARNS 667
|
Involved in RNA interference (RNAi); double-stranded RNA induces potent and specific gene silencing. RNAi is mediated by the RNA-induced silencing complex (RISC), a sequence-specific, multicomponent nuclease that destroys messenger RNAs homologous to the silencing trigger. Drosophila melanogaster (taxid: 7227) EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: 1EC: 3 |
| >sp|A5A6J2|DDX5_PANTR Probable ATP-dependent RNA helicase DDX5 OS=Pan troglodytes GN=DDX5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 447 bits (1151), Expect = e-125, Method: Compositional matrix adjust.
Identities = 241/472 (51%), Positives = 300/472 (63%), Gaps = 65/472 (13%)
Query: 28 SSRSGGYGGGYGGGS-GGGRFGDRGGRGKNSTMGGALRAIDWG--NLPPFEKNFFHPSPS 84
S R G G+G GG R G G+ K G L W LP FEKNF+ P
Sbjct: 6 SDRDRGRDRGFGAPRFGGSRAGPLSGK-KFGNPGEKLVKKKWNLDELPKFEKNFYQEHPD 64
Query: 85 VLNRSPHEVQAFRDKHQMTLKG-NAPNPITEFAEANFPDYVLKEVKRQGFDRPTPIQAQG 143
+ R+ EV+ +R ++T++G N P P+ F EANFP V+ + RQ F PT IQAQG
Sbjct: 65 LARRTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQG 124
Query: 144 WPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQ--- 200
WP+A+SG +MVGVAQTGSGKTL+Y+LPAIVHINHQ L+ GDGPI LVLAPTRELAQ
Sbjct: 125 WPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQ 184
Query: 201 -------------------------QIQEVAR-------------DF---GSSTYLRST- 218
QI+++ R DF G + R+T
Sbjct: 185 QVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVENCIATPGRLIDFLECGKTNLRRTTY 244
Query: 219 CVYGGASK------GPQ---------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGS 263
V A + PQ PDRQ LMWSATWP+EV++LAEDFL YI INIG+
Sbjct: 245 LVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGA 304
Query: 264 LTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNY 323
L LSANHNI Q+V+VC + EK+ KL L+ +I S+ ENKTI+F ETKR+ D++T+ ++
Sbjct: 305 LELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENKTIVFVETKRRCDELTRKMRRD 364
Query: 324 GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVINFDYPNNSED 383
GW A+GIHGDKSQQERD+VL EF++G+A IL+ATDVA+RGLDV+DVKFVIN+DYPN+SED
Sbjct: 365 GWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSED 424
Query: 384 YIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDLIDVLTESNHPVDPKLSALAS 435
YIHRIGRT RS TGT+YTFFT N +Q DLI VL E+N ++PKL L
Sbjct: 425 YIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQAINPKLLQLVE 476
|
Involved in the alternative regulation of pre-mRNA splicing; its RNA helicase activity is necessary for increasing tau exon 10 inclusion and occurs in a RBM4-dependent manner. Binds to the tau pre-mRNA in the stem-loop region downstream of exon 10. The rate of ATP hydrolysis is highly stimulated by single-stranded RNA. Involved in transcriptional regulation; the function is independent of the RNA helicase activity. Transcriptional coactivator for estrogen receptor ESR1 and androgen receptor AR. Increases ESR1 AF-1 domain-mediated transactivation and ESR1 AF-1 and AF-2 domains transcriptional synergistic activity. Synergizes with DDX17 and SRA1 RNA to activate MYOD1 transcriptional activity and involved in skeletal muscle differentiation. Transcriptional coactivator for p53/TP53 and involved in p53/TP53 transcriptional response to DNA damage and p53/TP53-dependent apoptosis. Transcriptional coactivator for RUNX2 and involved in regulation of osteoblast differentiation. Acts as transcriptional repressor in a promoter-specicic manner; the function probbaly involves association with histone deacetylases, such as HDAC1. Pan troglodytes (taxid: 9598) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|P17844|DDX5_HUMAN Probable ATP-dependent RNA helicase DDX5 OS=Homo sapiens GN=DDX5 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 447 bits (1149), Expect = e-125, Method: Compositional matrix adjust.
Identities = 241/472 (51%), Positives = 300/472 (63%), Gaps = 65/472 (13%)
Query: 28 SSRSGGYGGGYGGGS-GGGRFGDRGGRGKNSTMGGALRAIDWG--NLPPFEKNFFHPSPS 84
S R G G+G GG R G G+ K G L W LP FEKNF+ P
Sbjct: 6 SDRDRGRDRGFGAPRFGGSRAGPLSGK-KFGNPGEKLVKKKWNLDELPKFEKNFYQEHPD 64
Query: 85 VLNRSPHEVQAFRDKHQMTLKG-NAPNPITEFAEANFPDYVLKEVKRQGFDRPTPIQAQG 143
+ R+ EV+ +R ++T++G N P P+ F EANFP V+ + RQ F PT IQAQG
Sbjct: 65 LARRTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQG 124
Query: 144 WPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQ--- 200
WP+A+SG +MVGVAQTGSGKTL+Y+LPAIVHINHQ L+ GDGPI LVLAPTRELAQ
Sbjct: 125 WPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQ 184
Query: 201 -------------------------QIQEVAR-------------DF---GSSTYLRST- 218
QI+++ R DF G + R+T
Sbjct: 185 QVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTY 244
Query: 219 CVYGGASK------GPQ---------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGS 263
V A + PQ PDRQ LMWSATWP+EV++LAEDFL YI INIG+
Sbjct: 245 LVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGA 304
Query: 264 LTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNY 323
L LSANHNI Q+V+VC + EK+ KL L+ +I S+ ENKTI+F ETKR+ D++T+ ++
Sbjct: 305 LELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENKTIVFVETKRRCDELTRKMRRD 364
Query: 324 GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVINFDYPNNSED 383
GW A+GIHGDKSQQERD+VL EF++G+A IL+ATDVA+RGLDV+DVKFVIN+DYPN+SED
Sbjct: 365 GWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSED 424
Query: 384 YIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDLIDVLTESNHPVDPKLSALAS 435
YIHRIGRT RS TGT+YTFFT N +Q DLI VL E+N ++PKL L
Sbjct: 425 YIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQAINPKLLQLVE 476
|
Involved in the alternative regulation of pre-mRNA splicing; its RNA helicase activity is necessary for increasing tau exon 10 inclusion and occurs in a RBM4-dependent manner. Binds to the tau pre-mRNA in the stem-loop region downstream of exon 10. The rate of ATP hydrolysis is highly stimulated by single-stranded RNA. Involved in transcriptional regulation; the function is independent of the RNA helicase activity. Transcriptional coactivator for estrogen receptor ESR1 and androgen receptor AR. Increases ESR1 AF-1 domain-mediated transactivation and ESR1 AF-1 and AF-2 domains transcriptional synergistic activity. Synergizes with DDX17 and SRA1 RNA to activate MYOD1 transcriptional activity and involved in skeletal muscle differentiation. Transcriptional coactivator for p53/TP53 and involved in p53/TP53 transcriptional response to DNA damage and p53/TP53-dependent apoptosis. Transcriptional coactivator for RUNX2 and involved in regulation of osteoblast differentiation. Acts as transcriptional repressor in a promoter-specicic manner; the function probbaly involves association with histone deacetylases, such as HDAC1. Homo sapiens (taxid: 9606) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|Q61656|DDX5_MOUSE Probable ATP-dependent RNA helicase DDX5 OS=Mus musculus GN=Ddx5 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 446 bits (1148), Expect = e-124, Method: Compositional matrix adjust.
Identities = 241/472 (51%), Positives = 299/472 (63%), Gaps = 65/472 (13%)
Query: 28 SSRSGGYGGGYGGGS-GGGRFGDRGGRGKNSTMGGALRAIDWG--NLPPFEKNFFHPSPS 84
S R G G+G GG R G G+ K G L W LP FEKNF+ P
Sbjct: 6 SDRDRGRDRGFGAPRFGGSRTGPLSGK-KFGNPGEKLVKKKWNLDELPKFEKNFYQEHPD 64
Query: 85 VLNRSPHEVQAFRDKHQMTLKG-NAPNPITEFAEANFPDYVLKEVKRQGFDRPTPIQAQG 143
+ R+ EV +R ++T++G N P P+ F EANFP V+ + RQ F PT IQAQG
Sbjct: 65 LARRTAQEVDTYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQG 124
Query: 144 WPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQ--- 200
WP+A+SG +MVGVAQTGSGKTL+Y+LPAIVHINHQ L+ GDGPI LVLAPTRELAQ
Sbjct: 125 WPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQ 184
Query: 201 -------------------------QIQEVAR-------------DF---GSSTYLRST- 218
QI+++ R DF G + R+T
Sbjct: 185 QVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTY 244
Query: 219 CVYGGASK------GPQ---------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGS 263
V A + PQ PDRQ LMWSATWP+EV++LAEDFL YI INIG+
Sbjct: 245 LVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGA 304
Query: 264 LTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNY 323
L LSANHNI Q+V+VC + EK+ KL L+ +I S+ ENKTI+F ETKR+ D++T+ ++
Sbjct: 305 LELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENKTIVFVETKRRCDELTRKMRRD 364
Query: 324 GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVINFDYPNNSED 383
GW A+GIHGDKSQQERD+VL EF++G+A IL+ATDVA+RGLDV+DVKFVIN+DYPN+SED
Sbjct: 365 GWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSED 424
Query: 384 YIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDLIDVLTESNHPVDPKLSALAS 435
YIHRIGRT RS TGT+YTFFT N +Q DLI VL E+N ++PKL L
Sbjct: 425 YIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQAINPKLLQLVE 476
|
Involved in the alternative regulation of pre-mRNA splicing; its RNA helicase activity is necessary for increasing tau exon 10 inclusion and occurs in a RBM4-dependent manner. Binds to the tau pre-mRNA in the stem-loop region downstream of exon 10. The rate of ATP hydrolysis is highly stimulated by single-stranded RNA. Involved in transcriptional regulation; the function is independent of the RNA helicase activity. Transcriptional coactivator for estrogen receptor ESR1 and androgen receptor AR. Increases ESR1 AF-1 domain-mediated transactivation and ESR1 AF-1 and AF-2 domains transcriptional synergistic activity. Synergizes with DDX17 and SRA1 RNA to activate MYOD1 transcriptional activity and involved in skeletal muscle differentiation. Transcriptional coactivator for p53/TP53 and involved in p53/TP53 transcriptional response to DNA damage and p53/TP53-dependent apoptosis. Transcriptional coactivator for RUNX2 and involved in regulation of osteoblast differentiation. Acts as transcriptional repressor in a promoter-specicic manner; the function probbaly involves association with histone deacetylases, such as HDAC1. Mus musculus (taxid: 10090) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|Q5R4I9|DDX5_PONAB Probable ATP-dependent RNA helicase DDX5 OS=Pongo abelii GN=DDX5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 445 bits (1144), Expect = e-124, Method: Compositional matrix adjust.
Identities = 234/463 (50%), Positives = 296/463 (63%), Gaps = 68/463 (14%)
Query: 34 YGGGYGGGSGGGRFGDRGGRGKNSTMGGALRAIDWGNLPPFEKNFFHPSPSVLNRSPHEV 93
+GG G G +FG+ G + + D P FEKNF+ P + R+ EV
Sbjct: 21 FGGSRAGPLSGKKFGNPGEKL-------VKKKWDLDEPPKFEKNFYQEHPDLARRTAQEV 73
Query: 94 QAFRDKHQMTLKG-NAPNPITEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSN 152
+ +R ++T++G N P P+ F EANFP V+ + RQ F PT IQAQGWP+A+SG +
Sbjct: 74 ETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLD 133
Query: 153 MVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQ------------ 200
MVGVAQTGSGKTL+Y+LPAIVHINHQ L+ GDGPI LVLAPTRELAQ
Sbjct: 134 MVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRA 193
Query: 201 ----------------QIQEVAR-------------DF---GSSTYLRST-CVYGGASK- 226
QI+++ R DF G + R+T V A +
Sbjct: 194 CRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRM 253
Query: 227 -----GPQ---------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNI 272
PQ PDRQ LMWSATWP+EV++LAEDFL YI INIG+L LSANHNI
Sbjct: 254 LDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNI 313
Query: 273 QQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHG 332
Q+V+VC + EK+ KL L+ +I S+ ENKTI+F ETKR+ D++T+ ++ GW A+GIHG
Sbjct: 314 LQIVDVCHDVEKDEKLIRLMEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHG 373
Query: 333 DKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTG 392
DKSQQERD+VL EF++G+A IL+ATDVA+RGLDV+DVKFVIN+DYPN+SEDYIHRIGRT
Sbjct: 374 DKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTA 433
Query: 393 RSDNTGTSYTFFTQQNSRQAKDLIDVLTESNHPVDPKLSALAS 435
RS TGT+YTFFT N +Q DLI VL E+N ++PKL L
Sbjct: 434 RSTKTGTAYTFFTPNNIKQVSDLISVLREANQAINPKLLQLVE 476
|
Involved in the alternative regulation of pre-mRNA splicing; its RNA helicase activity is necessary for increasing tau exon 10 inclusion and occurs in a RBM4-dependent manner. Binds to the tau pre-mRNA in the stem-loop region downstream of exon 10. The rate of ATP hydrolysis is highly stimulated by single-stranded RNA. Involved in transcriptional regulation; the function is independent of the RNA helicase activity. Transcriptional coactivator for estrogen receptor ESR1 and androgen receptor AR. Increases ESR1 AF-1 domain-mediated transactivation and ESR1 AF-1 and AF-2 domains transcriptional synergistic activity. Synergizes with DDX17 and SRA1 RNA to activate MYOD1 transcriptional activity and involved in skeletal muscle differentiation. Transcriptional coactivator for p53/TP53 and involved in p53/TP53 transcriptional response to DNA damage and p53/TP53-dependent apoptosis. Transcriptional coactivator for RUNX2 and involved in regulation of osteoblast differentiation. Acts as transcriptional repressor in a promoter-specicic manner; the function probbaly involves association with histone deacetylases, such as HDAC1. Pongo abelii (taxid: 9601) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|Q4R6M5|DDX5_MACFA Probable ATP-dependent RNA helicase DDX5 OS=Macaca fascicularis GN=DDX5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 443 bits (1140), Expect = e-123, Method: Compositional matrix adjust.
Identities = 240/472 (50%), Positives = 299/472 (63%), Gaps = 65/472 (13%)
Query: 28 SSRSGGYGGGYGGGS-GGGRFGDRGGRGKNSTMGGALRAIDWG--NLPPFEKNFFHPSPS 84
S R G G+G GG R G G+ K G L W LP FEKNF+ P
Sbjct: 6 SDRDRGRDRGFGAPRFGGSRAGPLSGK-KFGNPGEKLVKKKWNLDELPKFEKNFYQEHPD 64
Query: 85 VLNRSPHEVQAFRDKHQMTLKG-NAPNPITEFAEANFPDYVLKEVKRQGFDRPTPIQAQG 143
+ R+ EV+ +R ++T++G N P P+ F EANFP V+ + RQ F PT IQAQG
Sbjct: 65 LARRTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQG 124
Query: 144 WPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQ--- 200
WP+A+SG +MVGVAQTGSGKTL+Y+LPAIVHINHQ L+ GDGPI LVLAPTRELAQ
Sbjct: 125 WPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQ 184
Query: 201 -------------------------QIQEVAR-------------DF---GSSTYLRST- 218
QI+++ R DF G + R+T
Sbjct: 185 QVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTY 244
Query: 219 CVYGGASK------GPQ---------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGS 263
V A + PQ PDRQ LMWSATWP+EV++LAEDFL YI INIG+
Sbjct: 245 LVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGA 304
Query: 264 LTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNY 323
L LSANHNI Q+V+VC + EK+ KL L+ +I S+ ENKTI+F ETKR+ D++T+ ++
Sbjct: 305 LELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENKTIVFVETKRRCDELTRKMRRD 364
Query: 324 GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVINFDYPNNSED 383
GW A+GIHGDKSQQER +VL EF++G+A IL+ATDVA+RGLDV+DVKFVIN+DYPN+SED
Sbjct: 365 GWPAMGIHGDKSQQERGWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSED 424
Query: 384 YIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDLIDVLTESNHPVDPKLSALAS 435
YIHRIGRT RS TGT+YTFFT N +Q DLI VL E+N ++PKL L
Sbjct: 425 YIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQAINPKLLQLVE 476
|
Involved in the alternative regulation of pre-mRNA splicing; its RNA helicase activity is necessary for increasing tau exon 10 inclusion and occurs in a RBM4-dependent manner. Binds to the tau pre-mRNA in the stem-loop region downstream of exon 10. The rate of ATP hydrolysis is highly stimulated by single-stranded RNA. Involved in transcriptional regulation; the function is independent of the RNA helicase activity. Transcriptional coactivator for estrogen receptor ESR1 and androgen receptor AR. Increases ESR1 AF-1 domain-mediated transactivation and ESR1 AF-1 and AF-2 domains transcriptional synergistic activity. Synergizes with DDX17 and SRA1 RNA to activate MYOD1 transcriptional activity and involved in skeletal muscle differentiation. Transcriptional coactivator for p53/TP53 and involved in p53/TP53 transcriptional response to DNA damage and p53/TP53-dependent apoptosis. Transcriptional coactivator for RUNX2 and involved in regulation of osteoblast differentiation. Acts as transcriptional repressor in a promoter-specicic manner; the function probbaly involves association with histone deacetylases, such as HDAC1. Macaca fascicularis (taxid: 9541) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|Q501J6|DDX17_MOUSE Probable ATP-dependent RNA helicase DDX17 OS=Mus musculus GN=Ddx17 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 439 bits (1129), Expect = e-122, Method: Compositional matrix adjust.
Identities = 229/440 (52%), Positives = 285/440 (64%), Gaps = 66/440 (15%)
Query: 60 GGALRAIDW--GNLPPFEKNFFHPSPSVLNRSPHEVQAFRDKHQMTLKGN--APNPITEF 115
G LR W LP FEKNF+ P V +P+EV R K ++T++G P P+ F
Sbjct: 35 GERLRKKKWDLSELPKFEKNFYVEHPEVARLTPYEVDELRRKKEITVRGGDVCPKPVFAF 94
Query: 116 AEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHI 175
ANFP YV+ + Q F PTPIQ QG+P+A+SG +MVG+AQTGSGKTLAY+LPAIVHI
Sbjct: 95 HHANFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHI 154
Query: 176 NHQSQLKPGDGPIVLVLAPTRELAQ----------------------------QIQEVAR 207
NHQ L+ GDGPI LVLAPTRELAQ QI+++ R
Sbjct: 155 NHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLER 214
Query: 208 -------------DFGSS--TYLRSTCVYGGASKG---------PQ---------PDRQV 234
DF S T LR C Y + PQ PDRQ
Sbjct: 215 GVEICIATPGRLIDFLESGKTNLRR-CTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQT 273
Query: 235 LMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLND 294
LMWSATWP+EV++LAEDFL Y QIN+G+L LSANHNI Q+V+VC E EK++KL L+ +
Sbjct: 274 LMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEE 333
Query: 295 ISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGIL 354
I ++ ENKTIIF ETKR+ D +T+ ++ GW A+ IHGDKSQ ERD+VL EFR+G+A IL
Sbjct: 334 IMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPIL 393
Query: 355 VATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAKD 414
+ATDVA+RGLDV+DVKFVIN+DYPN+SEDY+HRIGRT RS N GT+YTFFT N +QA++
Sbjct: 394 IATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARE 453
Query: 415 LIDVLTESNHPVDPKLSALA 434
LI VL E+N ++PKL L
Sbjct: 454 LIKVLEEANQAINPKLMQLV 473
|
RNA-dependent ATPase activity. Involved in transcriptional regulation. Transcriptional coactivator for estrogen receptor ESR1. Increases ESR1 AF-1 domain-mediated transactivation (By similarity). Synergizes with DDX5 and SRA1 RNA to activate MYOD1 transcriptional activity and probably involved in skeletal muscle differentiation. Mus musculus (taxid: 10090) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|Q92841|DDX17_HUMAN Probable ATP-dependent RNA helicase DDX17 OS=Homo sapiens GN=DDX17 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 439 bits (1128), Expect = e-122, Method: Compositional matrix adjust.
Identities = 229/440 (52%), Positives = 285/440 (64%), Gaps = 66/440 (15%)
Query: 60 GGALRAIDW--GNLPPFEKNFFHPSPSVLNRSPHEVQAFRDKHQMTLKGN--APNPITEF 115
G LR W LP FEKNF+ P V +P+EV R K ++T++G P P+ F
Sbjct: 114 GERLRKKKWDLSELPKFEKNFYVEHPEVARLTPYEVDELRRKKEITVRGGDVCPKPVFAF 173
Query: 116 AEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHI 175
ANFP YV+ + Q F PTPIQ QG+P+A+SG +MVG+AQTGSGKTLAY+LPAIVHI
Sbjct: 174 HHANFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHI 233
Query: 176 NHQSQLKPGDGPIVLVLAPTRELAQ----------------------------QIQEVAR 207
NHQ L+ GDGPI LVLAPTRELAQ QI+++ R
Sbjct: 234 NHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLER 293
Query: 208 -------------DFGSS--TYLRSTCVYGGASKG---------PQ---------PDRQV 234
DF S T LR C Y + PQ PDRQ
Sbjct: 294 GVEICIATPGRLIDFLESGKTNLRR-CTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQT 352
Query: 235 LMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLND 294
LMWSATWP+EV++LAEDFL Y QIN+G+L LSANHNI Q+V+VC E EK++KL L+ +
Sbjct: 353 LMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEE 412
Query: 295 ISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGIL 354
I ++ ENKTIIF ETKR+ D +T+ ++ GW A+ IHGDKSQ ERD+VL EFR+G+A IL
Sbjct: 413 IMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPIL 472
Query: 355 VATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAKD 414
+ATDVA+RGLDV+DVKFVIN+DYPN+SEDY+HRIGRT RS N GT+YTFFT N +QA++
Sbjct: 473 IATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARE 532
Query: 415 LIDVLTESNHPVDPKLSALA 434
LI VL E+N ++PKL L
Sbjct: 533 LIKVLEEANQAINPKLMQLV 552
|
RNA-dependent ATPase activity. Involved in transcriptional regulation. Transcriptional coactivator for estrogen receptor ESR1. Increases ESR1 AF-1 domain-mediated transactivation. Synergizes with DDX5 and SRA1 RNA to activate MYOD1 transcriptional activity and probably involved in skeletal muscle differentiation. Homo sapiens (taxid: 9606) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|Q4X195|DBP2_ASPFU ATP-dependent RNA helicase dbp2 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=dbp2 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 425 bits (1093), Expect = e-118, Method: Compositional matrix adjust.
Identities = 236/504 (46%), Positives = 298/504 (59%), Gaps = 85/504 (16%)
Query: 19 TSGGGGYGGSSRSGGYGGGYGGG----------------------SGGGRFGDRGGRGKN 56
+S GGGY SR Y GG+ G G GR G G +
Sbjct: 2 SSYGGGYQRESRGDSYRGGHDTGYQNGNGYSGGYSGGGGYGGGYGGGYGRGGGAAGGDRM 61
Query: 57 STMGGALRAIDWG--NLPPFEKNFFHPSPSVLNRSPHEVQAFRDKHQMTLKG-NAPNPIT 113
S +G L+ DW +LP FEK+F+ P V RS EV+ FR KH+MT++G N P P+
Sbjct: 62 SNLGAGLKKQDWDLDSLPKFEKSFYKEHPDVAARSEREVEEFRKKHEMTVQGRNVPRPVE 121
Query: 114 EFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIV 173
F EA FP YVL EVK QGF+RPT IQ+QGWP+A+SG ++VG+A+TGSGKTL Y LPAIV
Sbjct: 122 NFDEAGFPQYVLSEVKAQGFERPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIV 181
Query: 174 HINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGSSTYLRSTCVYGGASKGPQ---- 229
HIN Q L PGDGPIVL+LAPTRELA QIQ FG S+ +R+TCVYGG KGPQ
Sbjct: 182 HINAQPLLAPGDGPIVLILAPTRELAVQIQAEISKFGKSSRIRNTCVYGGVPKGPQIRDL 241
Query: 230 ----------PDRQVLMWSA--TWPREVQKLAED-------------------------- 251
P R + M A T R V L D
Sbjct: 242 SRGVEVCIATPGRLIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQ 301
Query: 252 ------------------FLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLN 293
FL+ YIQ+NIGS+ LSANH I Q+VEV ++ EK +K+ L
Sbjct: 302 TCMWSATWPKEVRQLATDFLNDYIQVNIGSMDLSANHRITQIVEVVSDFEKRDKMIKHLE 361
Query: 294 DISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGI 353
I NK +IF TKR D+IT+ ++ GW A+ IHGDK QQERD+VL EF+ G++ I
Sbjct: 362 KIMENRSNKCLIFTGTKRIADEITRFLRQDGWPALSIHGDKQQQERDWVLNEFKTGKSPI 421
Query: 354 LVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAK 413
+VATDVA+RG+DV D+ V+N+DYPNNSEDYIHRIGRTGR+ GT+ TFFT +NS+QA+
Sbjct: 422 MVATDVASRGIDVRDITHVLNYDYPNNSEDYIHRIGRTGRAGAKGTAITFFTTENSKQAR 481
Query: 414 DLIDVLTESNHPVDPKLSALASRS 437
DL+ +LTE+ +DP+L+ +A S
Sbjct: 482 DLVTILTEAKQQIDPRLAEMARYS 505
|
ATP-dependent RNA helicase involved nonsense-mediated mRNA decay and ribosome biogenesis through rRNA processing. Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) (taxid: 330879) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|Q6C4D4|DBP2_YARLI ATP-dependent RNA helicase DBP2 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=DBP2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 424 bits (1091), Expect = e-118, Method: Compositional matrix adjust.
Identities = 221/436 (50%), Positives = 280/436 (64%), Gaps = 63/436 (14%)
Query: 61 GALRAIDWG--NLPPFEKNFFHPSPSVLNRSPHEVQAFRDKHQMTLKGN-APNPITEFAE 117
G L DW LP FEKNF+ P+V R+ EV AFR ++QMTL G+ P P+T F E
Sbjct: 61 GNLPKQDWDLEKLPQFEKNFYKEDPAVTERTDEEVTAFRKENQMTLHGDGIPKPVTNFDE 120
Query: 118 ANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINH 177
A FP YVLKEVK+QGF++PT IQ QGWP+A++G +++G+A TGSGKTL+Y LPAIVHIN
Sbjct: 121 AGFPPYVLKEVKQQGFEKPTAIQCQGWPMALTGRDVIGIASTGSGKTLSYCLPAIVHINA 180
Query: 178 QSQLKPGDGPIVLVLAPTRELA----------------------------QQIQEVAR-- 207
Q L GDGPIVLVLAPTRELA QQI+++AR
Sbjct: 181 QPMLSHGDGPIVLVLAPTRELAVQIQQECSKFGKSSKIRNTCVYGGVPRGQQIRDLARGV 240
Query: 208 --------------DFGSSTYLRST-CVYGGASK------GPQ---------PDRQVLMW 237
+ G + R T V A + PQ PDRQ LMW
Sbjct: 241 EIVIATPGRLLDMLESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMW 300
Query: 238 SATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISS 297
SATWP+EVQ+LA D+L IQ+NIGSL LSA+HNI QVVEVC E+EK ++L L +
Sbjct: 301 SATWPKEVQRLAHDYLKDQIQVNIGSLELSASHNITQVVEVCTEYEKRDRLVKHLETVME 360
Query: 298 KDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVAT 357
E+K +IF TKR D ITK ++ GW A+ IHGDK QQERD+VL EFR G++ I+VAT
Sbjct: 361 NKESKCLIFTGTKRVADDITKFLRQDGWPALAIHGDKQQQERDWVLNEFRQGKSPIMVAT 420
Query: 358 DVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDLID 417
DVA+RG+DV + FVIN+DYP+NSEDY+HRIGRTGR+ GT+YT+FT+ N +QA+DL+
Sbjct: 421 DVASRGIDVKGINFVINYDYPSNSEDYVHRIGRTGRAGTKGTAYTYFTEDNRKQARDLLV 480
Query: 418 VLTESNHPVDPKLSAL 433
+L E+ +DPKL +
Sbjct: 481 ILREAKQHIDPKLEEM 496
|
ATP-dependent RNA helicase involved nonsense-mediated mRNA decay and ribosome biogenesis through rRNA processing. Yarrowia lipolytica (strain CLIB 122 / E 150) (taxid: 284591) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 453 | ||||||
| 241148960 | 460 | ATP-dependent RNA helicase, putative [Ix | 0.841 | 0.828 | 0.589 | 1e-140 | |
| 328697427 | 551 | PREDICTED: ATP-dependent RNA helicase p6 | 0.834 | 0.686 | 0.590 | 1e-138 | |
| 328697425 | 516 | PREDICTED: ATP-dependent RNA helicase p6 | 0.834 | 0.732 | 0.590 | 1e-138 | |
| 242021756 | 675 | DEAD box ATP-dependent RNA helicase, put | 0.874 | 0.586 | 0.555 | 1e-137 | |
| 321467260 | 487 | hypothetical protein DAPPUDRAFT_213150 [ | 0.827 | 0.770 | 0.575 | 1e-137 | |
| 282158103 | 549 | ATP-dependent RNA helicase p62 [Triboliu | 0.929 | 0.766 | 0.533 | 1e-136 | |
| 283854609 | 540 | DEAD(Asp-Glu-Ala-Asp) box polypeptide 5 | 0.843 | 0.707 | 0.563 | 1e-135 | |
| 357620336 | 592 | DEAD box polypeptide 5 [Danaus plexippus | 0.834 | 0.638 | 0.562 | 1e-134 | |
| 328717963 | 556 | PREDICTED: probable ATP-dependent RNA he | 0.827 | 0.674 | 0.559 | 1e-134 | |
| 340725185 | 607 | PREDICTED: LOW QUALITY PROTEIN: probable | 0.845 | 0.630 | 0.564 | 1e-133 |
| >gi|241148960|ref|XP_002405949.1| ATP-dependent RNA helicase, putative [Ixodes scapularis] gi|215493782|gb|EEC03423.1| ATP-dependent RNA helicase, putative [Ixodes scapularis] | Back alignment and taxonomy information |
|---|
Score = 505 bits (1300), Expect = e-140, Method: Compositional matrix adjust.
Identities = 247/419 (58%), Positives = 303/419 (72%), Gaps = 38/419 (9%)
Query: 55 KNSTMGGALRAIDWG--NLPPFEKNFFHPSPSVLNRSPHEVQAFRDKHQMTLKG-NAPNP 111
+NS GG LR DW L PF+KNF+ P+ NR EV A+R +++T+KG P
Sbjct: 29 RNSQPGGNLRKPDWDRMQLQPFQKNFYQEHPNTANRPMSEVDAYRQANEITVKGREVHKP 88
Query: 112 ITEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPA 171
I F E NFPDY++K ++ Q + PT IQAQGWPIA+SG N+VG+AQTGSGKTL Y+LPA
Sbjct: 89 ILRFDEGNFPDYIMKGIEAQKYTTPTCIQAQGWPIALSGKNLVGIAQTGSGKTLGYILPA 148
Query: 172 IVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGSSTYLRSTCVYGGASKGPQ-- 229
I+HINHQ L+ GDGPI LVLAPTRELAQQIQ+V+ +FG ++ +RSTCV+GGA KGPQ
Sbjct: 149 IIHINHQPYLQRGDGPIALVLAPTRELAQQIQQVSSEFGKASRVRSTCVFGGAPKGPQLR 208
Query: 230 ---------------------------------PDRQVLMWSATWPREVQKLAEDFLDSY 256
PD Q LMWSATWP+EV+ LAE+FL Y
Sbjct: 209 DIERGSEICIATPGRLIDFLEAGKVNLRRCTYLPDCQTLMWSATWPKEVRSLAEEFLRDY 268
Query: 257 IQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKI 316
IQINIG+L L ANH I Q+++VC E EKE+KL L +I ++ ENKTI+FAETKRKVD +
Sbjct: 269 IQINIGALQLCANHRILQIIDVCQETEKEDKLMKLHQEILNEKENKTIVFAETKRKVDDL 328
Query: 317 TKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVINFD 376
T+ ++ YGW A+ IHGDK+QQERD+VL EFR+GRA ILVATDVAARGLDVDDV+FVIN+D
Sbjct: 329 TRKMRRYGWPAICIHGDKTQQERDWVLNEFRSGRAPILVATDVAARGLDVDDVRFVINYD 388
Query: 377 YPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDLIDVLTESNHPVDPKLSALAS 435
YPN SEDYIHRIGRT RS+ TGT+YTFFT NSRQAK+LI VL E+N V+PKL +A+
Sbjct: 389 YPNCSEDYIHRIGRTARSNKTGTAYTFFTPNNSRQAKELISVLQEANQVVNPKLYEIAN 447
|
Source: Ixodes scapularis Species: Ixodes scapularis Genus: Ixodes Family: Ixodidae Order: Ixodida Class: Arachnida Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|328697427|ref|XP_001946984.2| PREDICTED: ATP-dependent RNA helicase p62-like isoform 1 [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 499 bits (1284), Expect = e-138, Method: Compositional matrix adjust.
Identities = 262/444 (59%), Positives = 301/444 (67%), Gaps = 66/444 (14%)
Query: 60 GGALRAIDWG--NLPPFEKNFFHPSPSVLNRSPHEVQAFRDKHQMTL----KGNAPNPIT 113
G L+A +W L PF+K F+ P P++ RS EV +R +T+ + P PI
Sbjct: 78 GANLQAPNWDRVQLRPFKKEFYVPHPTIERRSYEEVDKYRTGKDITVMSSDRSPVPYPIQ 137
Query: 114 EFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIV 173
F EANFPDYV+ ++ +GF PTPIQAQGWPIAMSG NMVGVAQTGSGKTL Y LPA+V
Sbjct: 138 HFKEANFPDYVMTVIRNEGFTEPTPIQAQGWPIAMSGKNMVGVAQTGSGKTLGYTLPAVV 197
Query: 174 HINHQSQLKPGDGPIVLVLAPTRELAQQIQEV------------------------ARDF 209
HIN+Q LK GDGPI LVLAPTRELAQQIQ+V ARD
Sbjct: 198 HINNQEPLKKGDGPIALVLAPTRELAQQIQKVAGLFNQSTYLRSTCIYGGAPKSHQARDL 257
Query: 210 GSSTYL--------------RST----CVYGGASKG---------PQ---------PDRQ 233
+ + R+T C Y + PQ PDRQ
Sbjct: 258 MNGVEIVIATPGRLLDFLESRATNLQRCTYLVLDEADRMLDMGFEPQIRKIIQQIRPDRQ 317
Query: 234 VLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLN 293
VLMWSATWP+EVQKLA DFL YIQ+N+GSLTLSANHNI Q V+VC EHEKE+KL LL
Sbjct: 318 VLMWSATWPKEVQKLANDFLSDYIQLNVGSLTLSANHNILQNVDVCQEHEKEDKLMDLLQ 377
Query: 294 DISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGI 353
DI++ +ENKTIIFAETKRKVD IT+ I N G AVGIHGDKSQ ERD+VLK+FR GRA I
Sbjct: 378 DIANMEENKTIIFAETKRKVDTITRKITNMGARAVGIHGDKSQSERDHVLKQFRGGRANI 437
Query: 354 LVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAK 413
LVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRS GTSY FFT NS+QAK
Sbjct: 438 LVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSSQKGTSYAFFTHSNSKQAK 497
Query: 414 DLIDVLTESNHPVDPKLSALASRS 437
DL+ VLTE+N +DPKL+A+A+RS
Sbjct: 498 DLVAVLTEANQRIDPKLAAMAARS 521
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|328697425|ref|XP_003240334.1| PREDICTED: ATP-dependent RNA helicase p62-like isoform 2 [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 498 bits (1281), Expect = e-138, Method: Compositional matrix adjust.
Identities = 262/444 (59%), Positives = 301/444 (67%), Gaps = 66/444 (14%)
Query: 60 GGALRAIDWG--NLPPFEKNFFHPSPSVLNRSPHEVQAFRDKHQMTL----KGNAPNPIT 113
G L+A +W L PF+K F+ P P++ RS EV +R +T+ + P PI
Sbjct: 43 GANLQAPNWDRVQLRPFKKEFYVPHPTIERRSYEEVDKYRTGKDITVMSSDRSPVPYPIQ 102
Query: 114 EFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIV 173
F EANFPDYV+ ++ +GF PTPIQAQGWPIAMSG NMVGVAQTGSGKTL Y LPA+V
Sbjct: 103 HFKEANFPDYVMTVIRNEGFTEPTPIQAQGWPIAMSGKNMVGVAQTGSGKTLGYTLPAVV 162
Query: 174 HINHQSQLKPGDGPIVLVLAPTRELAQQIQEV------------------------ARDF 209
HIN+Q LK GDGPI LVLAPTRELAQQIQ+V ARD
Sbjct: 163 HINNQEPLKKGDGPIALVLAPTRELAQQIQKVAGLFNQSTYLRSTCIYGGAPKSHQARDL 222
Query: 210 GSSTYL--------------RST----CVYGGASKG---------PQ---------PDRQ 233
+ + R+T C Y + PQ PDRQ
Sbjct: 223 MNGVEIVIATPGRLLDFLESRATNLQRCTYLVLDEADRMLDMGFEPQIRKIIQQIRPDRQ 282
Query: 234 VLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLN 293
VLMWSATWP+EVQKLA DFL YIQ+N+GSLTLSANHNI Q V+VC EHEKE+KL LL
Sbjct: 283 VLMWSATWPKEVQKLANDFLSDYIQLNVGSLTLSANHNILQNVDVCQEHEKEDKLMDLLQ 342
Query: 294 DISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGI 353
DI++ +ENKTIIFAETKRKVD IT+ I N G AVGIHGDKSQ ERD+VLK+FR GRA I
Sbjct: 343 DIANMEENKTIIFAETKRKVDTITRKITNMGARAVGIHGDKSQSERDHVLKQFRGGRANI 402
Query: 354 LVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAK 413
LVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRS GTSY FFT NS+QAK
Sbjct: 403 LVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSSQKGTSYAFFTHSNSKQAK 462
Query: 414 DLIDVLTESNHPVDPKLSALASRS 437
DL+ VLTE+N +DPKL+A+A+RS
Sbjct: 463 DLVAVLTEANQRIDPKLAAMAARS 486
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|242021756|ref|XP_002431309.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus corporis] gi|212516577|gb|EEB18571.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus corporis] | Back alignment and taxonomy information |
|---|
Score = 494 bits (1273), Expect = e-137, Method: Compositional matrix adjust.
Identities = 256/461 (55%), Positives = 314/461 (68%), Gaps = 65/461 (14%)
Query: 42 SGGGRFGDRGGRGKNSTMGGALRAIDWGN--LPPFEKNFFHPSPSVLNRSPHEVQAFRDK 99
S G RF + K GGALR W L PF KNF+ P P+VL RS HEV+ +R +
Sbjct: 48 SVGRRFVTKRSSLKGKQPGGALRKPRWNQIELQPFTKNFYIPHPNVLKRSRHEVEKYRHE 107
Query: 100 HQMTLKG-NAPNPITEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQ 158
++T+KG P+PI F++AN+PDYV +E+++QGF PT IQAQGWPIA+SG +MVG+AQ
Sbjct: 108 KEITVKGIKVPDPIMYFSDANWPDYVQREIQKQGFTEPTAIQAQGWPIALSGMDMVGIAQ 167
Query: 159 TGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVA------------ 206
TGSGKTLAY+LPAIVHINHQ +L G+GPIVLVLAPTRELAQQIQ+VA
Sbjct: 168 TGSGKTLAYILPAIVHINHQPRLLRGEGPIVLVLAPTRELAQQIQQVACDFGTSSAVRNT 227
Query: 207 ------------RDFGS-------------------STYLRSTCVYGGASKG-------- 227
RD S +T LR C Y +
Sbjct: 228 CIFGGAPKMLQARDLESGVEICIATPGRLIDFLEKGTTNLRR-CTYLVLDEADRMLDMGF 286
Query: 228 -PQ---------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVE 277
PQ PDRQVLMWSATWP+EV++LAE+FL+ Y+QINIGSL LSANHNI Q+V+
Sbjct: 287 EPQIRKIIEQIRPDRQVLMWSATWPKEVRRLAEEFLNDYVQINIGSLQLSANHNILQIVD 346
Query: 278 VCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQ 337
VC+E+EK+ KL LLN+I+++ E KT+IF ETK+KVD+I +++ YG+ A+ IHGDKSQ
Sbjct: 347 VCSEYEKQTKLLKLLNEIANEPETKTMIFVETKKKVDEIARAVTRYGYQALAIHGDKSQS 406
Query: 338 ERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNT 397
+RDYVL +FR GR ILVATDVAARGLDVDDVKFVINFDYPNNSEDY+HRIGRTGR D T
Sbjct: 407 DRDYVLNQFRCGRVNILVATDVAARGLDVDDVKFVINFDYPNNSEDYVHRIGRTGRHDKT 466
Query: 398 GTSYTFFTQQNSRQAKDLIDVLTESNHPVDPKLSALASRSG 438
GT+YTFFT N +A DL+ VL E+N V+PKL L S +G
Sbjct: 467 GTAYTFFTPSNVNKAGDLVAVLQEANQVVNPKLYELVSYTG 507
|
Source: Pediculus humanus corporis Species: Pediculus humanus Genus: Pediculus Family: Pediculidae Order: Phthiraptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|321467260|gb|EFX78251.1| hypothetical protein DAPPUDRAFT_213150 [Daphnia pulex] | Back alignment and taxonomy information |
|---|
Score = 493 bits (1268), Expect = e-137, Method: Compositional matrix adjust.
Identities = 253/440 (57%), Positives = 306/440 (69%), Gaps = 65/440 (14%)
Query: 60 GGALRAIDW--GNLPPFEKNFFHPSPSVLNRSPHEVQAFRDKHQMTLKG-NAPNPITEFA 116
G LR W L PFEKNF+ P P++ +S H+++ +R +T++G + P PIT F
Sbjct: 4 GEKLRKPRWEMDRLQPFEKNFYKPHPNLTVKSVHDIEQYRASKDITIRGRDVPFPITSFD 63
Query: 117 EANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHIN 176
EA+FPDYV+ E++RQGF PT IQAQGWPIA+SGSNMVG+AQTGSGKTLAY LPAIVHIN
Sbjct: 64 EASFPDYVMTEIRRQGFKEPTSIQAQGWPIALSGSNMVGIAQTGSGKTLAYTLPAIVHIN 123
Query: 177 HQSQLKPGDGPIVLVLAPTRELAQ----------------------------QIQEVAR- 207
HQ L+PGDGPI L+LAPTRELAQ Q++++ R
Sbjct: 124 HQPYLEPGDGPIALILAPTRELAQQISSTAKDFGSSSRIRNTCVFGGAPKGPQLRDIERG 183
Query: 208 ------------DF--GSSTYLRSTCVYGGASKG---------PQ---------PDRQVL 235
DF T LR C Y + PQ PDRQ L
Sbjct: 184 VEIMIATPGRLIDFLEAGKTNLRR-CTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTL 242
Query: 236 MWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDI 295
MWSATWP+EV++LAE+FL YIQIN+GSLTLSANHNI Q+++VC EHEKE KL LL +I
Sbjct: 243 MWSATWPKEVRQLAEEFLTDYIQINVGSLTLSANHNILQIIDVCQEHEKETKLMTLLQEI 302
Query: 296 SSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILV 355
++DENKTIIFAETKRKVD IT++++ GW A+ IHGDK+Q ERD+VL EFR+G+A ILV
Sbjct: 303 GAEDENKTIIFAETKRKVDSITRAMRRDGWPAMCIHGDKAQPERDWVLNEFRSGKAPILV 362
Query: 356 ATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDL 415
ATDVAARGLDVDDVKFVINFDYPN SEDY+HRIGRTGRS TGT+YTFFT NS+QA+DL
Sbjct: 363 ATDVAARGLDVDDVKFVINFDYPNCSEDYVHRIGRTGRSQRTGTAYTFFTPNNSKQAQDL 422
Query: 416 IDVLTESNHPVDPKLSALAS 435
++VLTE+N V+PKL LAS
Sbjct: 423 VNVLTEANQVVNPKLYELAS 442
|
Source: Daphnia pulex Species: Daphnia pulex Genus: Daphnia Family: Daphniidae Order: Diplostraca Class: Branchiopoda Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|282158103|ref|NP_001164095.1| ATP-dependent RNA helicase p62 [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 491 bits (1263), Expect = e-136, Method: Compositional matrix adjust.
Identities = 265/497 (53%), Positives = 330/497 (66%), Gaps = 76/497 (15%)
Query: 17 YGTSGGGGYGGSSRSGGYGGG--YGGGSGGGRFGDRGGRGKNSTMGGA----------LR 64
YG GG Y G G+GGG G GG RF + GG G S GG LR
Sbjct: 3 YGKQNGGSYRGRGSENGFGGGASRNGFGGGSRFKNGGGGGGGSRFGGRSGGGGSPGNRLR 62
Query: 65 AIDWG--NLPPFEKNFFHPSPSVLNRSPHEVQAFRDKHQMTLKGNAPNPITEFAEANFPD 122
+W NL PF+K+F+ P P+V NRS +EV+ +R ++T+ G+APNPI F EA FPD
Sbjct: 63 KPNWDMKNLRPFKKDFYVPHPAVANRSKYEVEQYRRSKEITIDGDAPNPIQNFEEACFPD 122
Query: 123 YVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLK 182
YV E+++QG+D PT IQAQGWPIAMSG ++VG+AQTGSGKTLAY+LPAIVHIN+Q +
Sbjct: 123 YVQHEIQKQGYDTPTAIQAQGWPIAMSGKDLVGIAQTGSGKTLAYILPAIVHINNQPSIA 182
Query: 183 PGDGPIVLVLAPTRELAQQIQEVARDFGSSTYLRSTCVYGGASKGPQP---DRQVLMWSA 239
GDGPI LVLAPTRELAQQIQ+VA DFGSS+Y+R+TC++GGA KGPQ +R V + A
Sbjct: 183 RGDGPIALVLAPTRELAQQIQQVAHDFGSSSYVRNTCIFGGAPKGPQARDLERGVEICIA 242
Query: 240 TWPR---------------------------------EVQKLAE---------------- 250
T R +++K+ E
Sbjct: 243 TPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWP 302
Query: 251 --------DFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDE-- 300
DFL +Y+QINIGSL LSANHNI Q+V+VC EHEKE KL LL +I + E
Sbjct: 303 KEVRKLAQDFLRNYVQINIGSLQLSANHNILQIVDVCQEHEKETKLNNLLQEIGNNGEPG 362
Query: 301 NKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVA 360
K IIF ETK+KV+ IT++I+ YGW AV +HGDKSQQERD+VL+EFRNG++ IL+ATDVA
Sbjct: 363 AKIIIFVETKKKVESITRTIRRYGWPAVCMHGDKSQQERDFVLREFRNGKSSILIATDVA 422
Query: 361 ARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDLIDVLT 420
ARGLDV+ +K+VIN+DYPN+SEDYIHRIGRTGRSD TGTSY FFT N RQAKDL+ VL
Sbjct: 423 ARGLDVEGIKYVINYDYPNSSEDYIHRIGRTGRSDTTGTSYAFFTPSNFRQAKDLVSVLK 482
Query: 421 ESNHPVDPKLSALASRS 437
E+N ++P+LS +A+R
Sbjct: 483 EANQAINPRLSEMANRC 499
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|283854609|gb|ADB44900.1| DEAD(Asp-Glu-Ala-Asp) box polypeptide 5 [Macrobrachium nipponense] | Back alignment and taxonomy information |
|---|
Score = 489 bits (1259), Expect = e-135, Method: Compositional matrix adjust.
Identities = 253/449 (56%), Positives = 309/449 (68%), Gaps = 67/449 (14%)
Query: 60 GGALRAIDW--GNLPPFEKNFFHPSPSVLNRSPHEVQAFRDKHQMTLKG-NAPNPITEFA 116
G LR W L PFEKNF+ P+P VLNRSP+EV+ +R++ ++TL+G N PNPI F
Sbjct: 44 GERLRKPKWDLSRLAPFEKNFYQPTPQVLNRSPYEVEQYRNEKEITLRGKNIPNPIQYFT 103
Query: 117 EANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHIN 176
+ NFPDYV+ E++RQG++ PTPIQAQGWPI++ G + VG+AQTGSGKTL Y+LPAIVHIN
Sbjct: 104 DYNFPDYVMAEIRRQGYEIPTPIQAQGWPISLQGRDFVGIAQTGSGKTLGYILPAIVHIN 163
Query: 177 HQSQLKPGDGPIVLVLAPTRELAQQIQEVARD------------FG-------------- 210
HQ L+ GDGPI LVLAPTRELAQQI V++D FG
Sbjct: 164 HQPYLERGDGPIALVLAPTRELAQQILTVSQDFGTSSKIRSTCVFGGAPKGPQIRDLERG 223
Query: 211 -----------------SSTYLRSTCVYGGASKG---------PQ---------PDRQVL 235
S T LR C Y + PQ PDRQ L
Sbjct: 224 VEICIAIPGRLIDFLEASKTNLRR-CTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTL 282
Query: 236 MWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDI 295
MWSATWP+EV+ LAEDFL YIQ+N+GSL+LSANHNI Q+V+VC E EK+ KL LLN++
Sbjct: 283 MWSATWPKEVRNLAEDFLKDYIQLNVGSLSLSANHNILQIVDVCQEIEKDTKLRQLLNEM 342
Query: 296 SSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILV 355
+ + KTIIF ETKRKV+++T+ +++ GW A+ IHGDKSQQERD+VL EFR+GRA ILV
Sbjct: 343 AQEKAYKTIIFIETKRKVEEVTRGLRSTGWPAMCIHGDKSQQERDWVLSEFRSGRAPILV 402
Query: 356 ATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDL 415
ATDVAARGLDVDDVKFVIN+DYP+ SEDY+HRIGRTGRSD TGT+YTFFT N +QAKDL
Sbjct: 403 ATDVAARGLDVDDVKFVINYDYPSCSEDYVHRIGRTGRSDKTGTAYTFFTADNCKQAKDL 462
Query: 416 IDVLTESNHPVDPKLSAL--ASRSGGSGG 442
IDVL E+N V+P+L + SR GG G
Sbjct: 463 IDVLKEANQVVNPRLFEIMEMSRHGGGKG 491
|
Source: Macrobrachium nipponense Species: Macrobrachium nipponense Genus: Macrobrachium Family: Palaemonidae Order: Decapoda Class: Malacostraca Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|357620336|gb|EHJ72566.1| DEAD box polypeptide 5 [Danaus plexippus] | Back alignment and taxonomy information |
|---|
Score = 484 bits (1247), Expect = e-134, Method: Compositional matrix adjust.
Identities = 249/443 (56%), Positives = 306/443 (69%), Gaps = 65/443 (14%)
Query: 60 GGALRAIDWG--NLPPFEKNFFHPSPSVLNRSPHEVQAFRDKHQMTLKG-NAPNPITEFA 116
G ++R +W +L PF K+F++P PSVLNRSP+EV+ +R+KH++++ G + PNPI F
Sbjct: 99 GQSMRRPNWDTMSLQPFNKDFYNPPPSVLNRSPYEVEEYRNKHEVSVSGADVPNPIQHFE 158
Query: 117 EANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHIN 176
E NFPDYV+K + G++ PTPIQAQGWPIAMSG N+VG+AQTGSGKTLAY+LPAIVHIN
Sbjct: 159 EGNFPDYVMKSISSMGYNEPTPIQAQGWPIAMSGKNLVGIAQTGSGKTLAYILPAIVHIN 218
Query: 177 HQSQLKPGDGPIVLVLAPTRELAQQIQEV------------------------ARDF--- 209
+Q ++ GDGP+ LVLAPTRELAQQIQ+V ARD
Sbjct: 219 NQQPVRRGDGPVALVLAPTRELAQQIQQVATDFGNAAYVRNTCVFGGAPKREQARDLERG 278
Query: 210 -----------------GSSTYLRST-CVYGGASK------GPQ---------PDRQVLM 236
G++ R T V A + PQ PDRQ LM
Sbjct: 279 VEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLM 338
Query: 237 WSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDIS 296
WSATWP+EV+KLAED+L Y+QINIGS+ LSANHNI Q+V+VC EHEKENKL LL +I
Sbjct: 339 WSATWPKEVRKLAEDYLGDYVQINIGSMQLSANHNILQIVDVCQEHEKENKLNTLLQEIG 398
Query: 297 SKDE--NKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGIL 354
+ +KTIIF ETKRKV+ IT++I+ YGW AV +HGDK+QQERD VL +F+ GRA IL
Sbjct: 399 QSQDPGSKTIIFVETKRKVENITRNIRRYGWPAVCMHGDKTQQERDDVLYQFKQGRANIL 458
Query: 355 VATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAKD 414
VATDVAARGLDVD +K+VINFDYPN+SEDYIHRIGRTGRS + GTSY FFT NSRQAKD
Sbjct: 459 VATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTPSNSRQAKD 518
Query: 415 LIDVLTESNHPVDPKLSALASRS 437
L+ VL E+N V P+L +A R
Sbjct: 519 LVSVLQEANQVVSPQLQTMADRC 541
|
Source: Danaus plexippus Species: Danaus plexippus Genus: Danaus Family: Nymphalidae Order: Lepidoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|328717963|ref|XP_001951743.2| PREDICTED: probable ATP-dependent RNA helicase DDX5-like [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 484 bits (1246), Expect = e-134, Method: Compositional matrix adjust.
Identities = 245/438 (55%), Positives = 303/438 (69%), Gaps = 63/438 (14%)
Query: 60 GGALRAIDW--GNLPPFEKNFFHPSPSVLNRSPHEVQAFRDKHQMTLKG-NAPNPITEFA 116
G LR W L PF+K+F+ P +V NRS E++ +R++ ++TL G N P PI +F
Sbjct: 45 GSNLRKPRWETKKLEPFKKDFYLPHEAVQNRSKSEIEKYREEKEITLVGENIPKPIFKFD 104
Query: 117 EANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHIN 176
E+ FP+ ++KE+K+QGF PT IQAQGWPIA+SG+N+VG+A TGSGKTL+Y++PA++HI+
Sbjct: 105 ESGFPEIIIKELKKQGFVEPTAIQAQGWPIALSGNNLVGIASTGSGKTLSYIVPALIHIS 164
Query: 177 HQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFG-----SSTYL---------------- 215
HQ +L GDGPIVLVL+PTRELAQQIQ V DFG SST L
Sbjct: 165 HQRKLSRGDGPIVLVLSPTRELAQQIQTVCDDFGDAFGVSSTCLFGGAPKGGQASDLSRG 224
Query: 216 ---------------------RSTCVYGGASKG---------PQ---------PDRQVLM 236
C Y + PQ PDRQVLM
Sbjct: 225 VELVIATPGRLLDFLESERTNMCRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQVLM 284
Query: 237 WSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDIS 296
WSATWP+EV+ LAE+FLD YIQINIGSLTL+ANHNIQQ+VEVC E++KE KL LL I
Sbjct: 285 WSATWPKEVKNLAEEFLDEYIQINIGSLTLAANHNIQQIVEVCQEYDKETKLISLLKKIM 344
Query: 297 SKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVA 356
+DENKTI+F ETKR+VD+IT+ I+ +G++AV IHGDKSQ ERD VLK+FR+ R ILVA
Sbjct: 345 DEDENKTIVFIETKRRVDEITRKIKRHGYSAVCIHGDKSQYERDNVLKDFRDSRYPILVA 404
Query: 357 TDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDLI 416
TDVAARGLDV+DVKFVINFDYPNNSEDY+HRIGRTGRS TGT+YTFFTQ N++QA DL+
Sbjct: 405 TDVAARGLDVEDVKFVINFDYPNNSEDYVHRIGRTGRSHKTGTAYTFFTQSNAKQAADLV 464
Query: 417 DVLTESNHPVDPKLSALA 434
VLTE+N + PKL +A
Sbjct: 465 SVLTEANQTISPKLKDIA 482
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|340725185|ref|XP_003400954.1| PREDICTED: LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase DDX5-like [Bombus terrestris] | Back alignment and taxonomy information |
|---|
Score = 482 bits (1241), Expect = e-133, Method: Compositional matrix adjust.
Identities = 253/448 (56%), Positives = 296/448 (66%), Gaps = 65/448 (14%)
Query: 55 KNSTMGGALRAIDW--GNLPPFEKNFFHPSPSVLNRSPHEVQAFRDKHQMTLKG-NAPNP 111
KN G LR W LPPF K+F+ P P+V RS H V+A+R ++T+KG N P P
Sbjct: 53 KNRQPGERLRKPRWDMSTLPPFRKDFYQPHPNVTTRSSHLVEAYRSDKEITVKGTNVPGP 112
Query: 112 ITEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPA 171
F E FPDYVL E++RQGF PT IQAQGWPIA+SG +MVG+AQTGSGKTLAY+LPA
Sbjct: 113 NIFFEEGGFPDYVLNEIRRQGFGEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAYILPA 172
Query: 172 IVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEV------------------------AR 207
IVHINHQ +L DGPI L+LAPTRELAQQIQ+V AR
Sbjct: 173 IVHINHQPRLNRNDGPIALILAPTRELAQQIQQVASDFGISSQVRNTCIFGGAPKGPQAR 232
Query: 208 DFGS-------------------STYLRSTCVYGGASKG---------PQ---------P 230
D +T LR C Y + PQ P
Sbjct: 233 DLERGVEICIATPGRLIDFLERGTTNLRR-CTYLVLDEADRMLDMGFEPQIRKIVEQIRP 291
Query: 231 DRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFG 290
DRQ LMWSATWP+EV+ LAE+FL YIQINIGSL L+ANHNI Q+V+VC E+EKE KL
Sbjct: 292 DRQTLMWSATWPKEVRNLAEEFLTDYIQINIGSLQLAANHNILQIVDVCEEYEKEGKLMK 351
Query: 291 LLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGR 350
LL +IS++ ENKTIIF ETKRKVD IT++I YGW A+GIHGDKSQQERDYVL +FRN R
Sbjct: 352 LLEEISNEPENKTIIFVETKRKVDDITRAINRYGWQAIGIHGDKSQQERDYVLNQFRNSR 411
Query: 351 AGILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSR 410
+ ILVATDVAARGLDV+DVKFVIN DYP+NSEDY+HRIGRTGRS TGT+Y FFT N+
Sbjct: 412 SAILVATDVAARGLDVEDVKFVINLDYPSNSEDYVHRIGRTGRSQRTGTAYAFFTPGNAH 471
Query: 411 QAKDLIDVLTESNHPVDPKLSALASRSG 438
+A DLI VL E+ V+PKL L+ G
Sbjct: 472 KASDLIQVLEEAKQVVNPKLYELSRNPG 499
|
Source: Bombus terrestris Species: Bombus terrestris Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 453 | ||||||
| FB|FBgn0035720 | 818 | CG10077 [Drosophila melanogast | 0.443 | 0.245 | 0.706 | 1.4e-133 | |
| FB|FBgn0003261 | 719 | Rm62 "Rm62" [Drosophila melano | 0.441 | 0.278 | 0.663 | 1.2e-132 | |
| ZFIN|ZDB-GENE-030131-925 | 617 | ddx5 "DEAD (Asp-Glu-Ala-Asp) b | 0.443 | 0.325 | 0.681 | 8.8e-130 | |
| ZFIN|ZDB-GENE-030131-18 | 671 | si:dkey-156n14.5 "si:dkey-156n | 0.443 | 0.299 | 0.656 | 2.7e-126 | |
| UNIPROTKB|F1NM08 | 595 | DDX5 "Uncharacterized protein" | 0.443 | 0.337 | 0.656 | 5.6e-126 | |
| UNIPROTKB|F1NXI3 | 603 | DDX5 "Uncharacterized protein" | 0.443 | 0.333 | 0.656 | 5.6e-126 | |
| UNIPROTKB|F1MBQ8 | 614 | DDX5 "Uncharacterized protein" | 0.443 | 0.327 | 0.661 | 1.3e-124 | |
| UNIPROTKB|F1PEA6 | 671 | DDX5 "Uncharacterized protein" | 0.443 | 0.299 | 0.661 | 1.3e-124 | |
| UNIPROTKB|J3KTA4 | 614 | DDX5 "Probable ATP-dependent R | 0.443 | 0.327 | 0.661 | 1.3e-124 | |
| UNIPROTKB|P17844 | 614 | DDX5 "Probable ATP-dependent R | 0.443 | 0.327 | 0.661 | 1.3e-124 |
| FB|FBgn0035720 CG10077 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 769 (275.8 bits), Expect = 1.4e-133, Sum P(2) = 1.4e-133
Identities = 142/201 (70%), Positives = 173/201 (86%)
Query: 229 QPDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKL 288
+PDRQVLMWSATWP+EV++LAE+FL++YIQ+NIGSL+LSANHNI Q+V+VC E+EK KL
Sbjct: 333 RPDRQVLMWSATWPKEVRQLAEEFLNNYIQVNIGSLSLSANHNILQIVDVCDENEKLMKL 392
Query: 289 FGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRN 348
LL DIS+++E KTIIF ETK++VD+IT++I GW A IHGDKSQQERD+VL FRN
Sbjct: 393 IKLLTDISAENETKTIIFVETKKRVDEITRNISRQGWRACAIHGDKSQQERDFVLSSFRN 452
Query: 349 GRAGILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQN 408
GR ILVATDVAARGLDVDDVKFVIN+DYP+NSEDY+HRIGRTGRS+NTGT+YT FT N
Sbjct: 453 GRHSILVATDVAARGLDVDDVKFVINYDYPSNSEDYVHRIGRTGRSNNTGTAYTLFTHSN 512
Query: 409 SRQAKDLIDVLTESNHPVDPK 429
+ +A DLI VL E+N ++PK
Sbjct: 513 ANKANDLIQVLREANQTINPK 533
|
|
| FB|FBgn0003261 Rm62 "Rm62" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 706 (253.6 bits), Expect = 1.2e-132, Sum P(2) = 1.2e-132
Identities = 134/202 (66%), Positives = 166/202 (82%)
Query: 229 QPDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKL 288
+PDRQ LMWSATWP+EV++LAEDFL +YIQINIGSL LSANHNI+QVV+VC E KE KL
Sbjct: 457 RPDRQTLMWSATWPKEVKQLAEDFLGNYIQINIGSLELSANHNIRQVVDVCDEFSKEEKL 516
Query: 289 FGLLNDI--SSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEF 346
LL+DI +S+ K IIF ETKR+VD + + I+++G IHGDKSQ ERD+VL+EF
Sbjct: 517 KTLLSDIYDTSESPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFVLREF 576
Query: 347 RNGRAGILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQ 406
R+G++ ILVATDVAARGLDVD +K+VINFDYP NSEDYIHRIGRTGRS+ GTS+ FFT+
Sbjct: 577 RSGKSNILVATDVAARGLDVDGIKYVINFDYPQNSEDYIHRIGRTGRSNTKGTSFAFFTK 636
Query: 407 QNSRQAKDLIDVLTESNHPVDP 428
N++QAK L+DVL E+N ++P
Sbjct: 637 NNAKQAKALVDVLREANQEINP 658
|
|
| ZFIN|ZDB-GENE-030131-925 ddx5 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 5" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 746 (267.7 bits), Expect = 8.8e-130, Sum P(2) = 8.8e-130
Identities = 137/201 (68%), Positives = 168/201 (83%)
Query: 229 QPDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKL 288
+PDRQ LMWSATWP+EV++LAEDFL YIQIN+G+L LSANHNI Q+V+VC + EKE+KL
Sbjct: 272 RPDRQTLMWSATWPKEVRQLAEDFLKEYIQINVGALQLSANHNILQIVDVCNDGEKEDKL 331
Query: 289 FGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRN 348
LL +I S+ ENKTIIF ETKR+ D +T+ ++ GW A+GIHGDK+QQERD+VL EF+
Sbjct: 332 IRLLEEIMSEKENKTIIFVETKRRCDDLTRRMRRDGWPAMGIHGDKNQQERDWVLNEFKY 391
Query: 349 GRAGILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQN 408
G+A IL+ATDVA+RGLDV+DVKFVINFDYPNNSEDYIHRIGRT RS TGT+YTFFT N
Sbjct: 392 GKAPILIATDVASRGLDVEDVKFVINFDYPNNSEDYIHRIGRTARSQKTGTAYTFFTPNN 451
Query: 409 SRQAKDLIDVLTESNHPVDPK 429
+QA DL+ VL E+N ++PK
Sbjct: 452 MKQAHDLVSVLREANQAINPK 472
|
|
| ZFIN|ZDB-GENE-030131-18 si:dkey-156n14.5 "si:dkey-156n14.5" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 728 (261.3 bits), Expect = 2.7e-126, Sum P(2) = 2.7e-126
Identities = 132/201 (65%), Positives = 169/201 (84%)
Query: 229 QPDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKL 288
+PDRQ LMWSATWP+EV++LAEDFL Y+QINIG+L LSANHNI Q+V+VC E+EK+NKL
Sbjct: 271 RPDRQTLMWSATWPKEVRQLAEDFLQDYVQINIGALELSANHNILQIVDVCMENEKDNKL 330
Query: 289 FGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRN 348
L+ +I ++ ENKTIIF ETK++ D++T+ ++ GW A+ IHGDKSQ ERD+VL EFR+
Sbjct: 331 IQLMEEIMAEKENKTIIFVETKKRCDELTRRMRRDGWPAMCIHGDKSQPERDWVLTEFRS 390
Query: 349 GRAGILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQN 408
G+A IL+ATDVA+RGLDV+DVKFVIN+DYPN+SEDY+HRIGRT RS N GT+YTFFT N
Sbjct: 391 GKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGN 450
Query: 409 SRQAKDLIDVLTESNHPVDPK 429
RQA+DL+ VL E+ ++PK
Sbjct: 451 LRQARDLVRVLEEARQAINPK 471
|
|
| UNIPROTKB|F1NM08 DDX5 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 729 (261.7 bits), Expect = 5.6e-126, Sum P(2) = 5.6e-126
Identities = 132/201 (65%), Positives = 167/201 (83%)
Query: 229 QPDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKL 288
+PDRQ LMWSATWP+EV++LAEDFL Y+ INIG+L LSANHNI Q+V+VC + EK++KL
Sbjct: 258 RPDRQTLMWSATWPKEVRQLAEDFLKEYVHINIGALELSANHNILQIVDVCHDVEKDDKL 317
Query: 289 FGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRN 348
L+ +I S+ ENKTI+F ETKR+ D +T+ ++ GW A+GIHGDKSQQERD+VL EF++
Sbjct: 318 IRLMEEIMSEKENKTIVFVETKRRCDDLTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKH 377
Query: 349 GRAGILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQN 408
G+A IL+ATDVA+RGLDV+DVKFVIN+DYPN+SEDYIHRIGRT RS TGT+YTFFT N
Sbjct: 378 GKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNN 437
Query: 409 SRQAKDLIDVLTESNHPVDPK 429
+Q DLI VL E+N ++PK
Sbjct: 438 IKQVNDLISVLREANQAINPK 458
|
|
| UNIPROTKB|F1NXI3 DDX5 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 729 (261.7 bits), Expect = 5.6e-126, Sum P(2) = 5.6e-126
Identities = 132/201 (65%), Positives = 167/201 (83%)
Query: 229 QPDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKL 288
+PDRQ LMWSATWP+EV++LAEDFL Y+ INIG+L LSANHNI Q+V+VC + EK++KL
Sbjct: 266 RPDRQTLMWSATWPKEVRQLAEDFLKEYVHINIGALELSANHNILQIVDVCHDVEKDDKL 325
Query: 289 FGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRN 348
L+ +I S+ ENKTI+F ETKR+ D +T+ ++ GW A+GIHGDKSQQERD+VL EF++
Sbjct: 326 IRLMEEIMSEKENKTIVFVETKRRCDDLTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKH 385
Query: 349 GRAGILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQN 408
G+A IL+ATDVA+RGLDV+DVKFVIN+DYPN+SEDYIHRIGRT RS TGT+YTFFT N
Sbjct: 386 GKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNN 445
Query: 409 SRQAKDLIDVLTESNHPVDPK 429
+Q DLI VL E+N ++PK
Sbjct: 446 IKQVNDLISVLREANQAINPK 466
|
|
| UNIPROTKB|F1MBQ8 DDX5 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 731 (262.4 bits), Expect = 1.3e-124, Sum P(2) = 1.3e-124
Identities = 133/201 (66%), Positives = 167/201 (83%)
Query: 229 QPDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKL 288
+PDRQ LMWSATWP+EV++LAEDFL YI INIG+L LSANHNI Q+V+VC + EK+ KL
Sbjct: 270 RPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKL 329
Query: 289 FGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRN 348
L+ +I S+ ENKTI+F ETKR+ D++T+ ++ GW A+GIHGDKSQQERD+VL EF++
Sbjct: 330 IRLMEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKH 389
Query: 349 GRAGILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQN 408
G+A IL+ATDVA+RGLDV+DVKFVIN+DYPN+SEDYIHRIGRT RS TGT+YTFFT N
Sbjct: 390 GKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNN 449
Query: 409 SRQAKDLIDVLTESNHPVDPK 429
+Q DLI VL E+N ++PK
Sbjct: 450 IKQVSDLISVLREANQAINPK 470
|
|
| UNIPROTKB|F1PEA6 DDX5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 731 (262.4 bits), Expect = 1.3e-124, Sum P(2) = 1.3e-124
Identities = 133/201 (66%), Positives = 167/201 (83%)
Query: 229 QPDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKL 288
+PDRQ LMWSATWP+EV++LAEDFL YI INIG+L LSANHNI Q+V+VC + EK+ KL
Sbjct: 327 RPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKL 386
Query: 289 FGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRN 348
L+ +I S+ ENKTI+F ETKR+ D++T+ ++ GW A+GIHGDKSQQERD+VL EF++
Sbjct: 387 IRLMEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKH 446
Query: 349 GRAGILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQN 408
G+A IL+ATDVA+RGLDV+DVKFVIN+DYPN+SEDYIHRIGRT RS TGT+YTFFT N
Sbjct: 447 GKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNN 506
Query: 409 SRQAKDLIDVLTESNHPVDPK 429
+Q DLI VL E+N ++PK
Sbjct: 507 IKQVSDLISVLREANQAINPK 527
|
|
| UNIPROTKB|J3KTA4 DDX5 "Probable ATP-dependent RNA helicase DDX5" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 731 (262.4 bits), Expect = 1.3e-124, Sum P(2) = 1.3e-124
Identities = 133/201 (66%), Positives = 167/201 (83%)
Query: 229 QPDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKL 288
+PDRQ LMWSATWP+EV++LAEDFL YI INIG+L LSANHNI Q+V+VC + EK+ KL
Sbjct: 270 RPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKL 329
Query: 289 FGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRN 348
L+ +I S+ ENKTI+F ETKR+ D++T+ ++ GW A+GIHGDKSQQERD+VL EF++
Sbjct: 330 IRLMEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKH 389
Query: 349 GRAGILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQN 408
G+A IL+ATDVA+RGLDV+DVKFVIN+DYPN+SEDYIHRIGRT RS TGT+YTFFT N
Sbjct: 390 GKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNN 449
Query: 409 SRQAKDLIDVLTESNHPVDPK 429
+Q DLI VL E+N ++PK
Sbjct: 450 IKQVSDLISVLREANQAINPK 470
|
|
| UNIPROTKB|P17844 DDX5 "Probable ATP-dependent RNA helicase DDX5" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 731 (262.4 bits), Expect = 1.3e-124, Sum P(2) = 1.3e-124
Identities = 133/201 (66%), Positives = 167/201 (83%)
Query: 229 QPDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKL 288
+PDRQ LMWSATWP+EV++LAEDFL YI INIG+L LSANHNI Q+V+VC + EK+ KL
Sbjct: 270 RPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKL 329
Query: 289 FGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRN 348
L+ +I S+ ENKTI+F ETKR+ D++T+ ++ GW A+GIHGDKSQQERD+VL EF++
Sbjct: 330 IRLMEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKH 389
Query: 349 GRAGILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQN 408
G+A IL+ATDVA+RGLDV+DVKFVIN+DYPN+SEDYIHRIGRT RS TGT+YTFFT N
Sbjct: 390 GKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNN 449
Query: 409 SRQAKDLIDVLTESNHPVDPK 429
+Q DLI VL E+N ++PK
Sbjct: 450 IKQVSDLISVLREANQAINPK 470
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q61656 | DDX5_MOUSE | 3, ., 6, ., 4, ., 1, 3 | 0.5105 | 0.8984 | 0.6628 | yes | N/A |
| Q6CIV2 | DBP2_KLULA | 3, ., 6, ., 4, ., 1, 3 | 0.4666 | 0.8498 | 0.6949 | yes | N/A |
| P0CQ76 | DBP2_CRYNJ | 3, ., 6, ., 4, ., 1, 3 | 0.4555 | 0.8278 | 0.6944 | yes | N/A |
| A2QC74 | DBP2_ASPNC | 3, ., 6, ., 4, ., 1, 3 | 0.4798 | 0.8454 | 0.6778 | yes | N/A |
| Q8SRB2 | DBP2_ENCCU | 3, ., 6, ., 4, ., 1, 3 | 0.3886 | 0.9094 | 0.8323 | yes | N/A |
| Q5B0J9 | DBP2_EMENI | 3, ., 6, ., 4, ., 1, 3 | 0.5550 | 0.4613 | 0.3712 | yes | N/A |
| Q6BY27 | DBP2_DEBHA | 3, ., 6, ., 4, ., 1, 3 | 0.4851 | 0.8344 | 0.7052 | yes | N/A |
| A5A6J2 | DDX5_PANTR | 3, ., 6, ., 4, ., 1, 3 | 0.5105 | 0.8984 | 0.6628 | yes | N/A |
| A3LQW7 | DBP2_PICST | 3, ., 6, ., 4, ., 1, 3 | 0.4761 | 0.8344 | 0.7132 | yes | N/A |
| P17844 | DDX5_HUMAN | 3, ., 6, ., 4, ., 1, 3 | 0.5105 | 0.8984 | 0.6628 | yes | N/A |
| Q6FLF3 | DBP2_CANGA | 3, ., 6, ., 4, ., 1, 3 | 0.4643 | 0.9271 | 0.7720 | yes | N/A |
| Q5R4I9 | DDX5_PONAB | 3, ., 6, ., 4, ., 1, 3 | 0.5053 | 0.8719 | 0.6433 | yes | N/A |
| Q4X195 | DBP2_ASPFU | 3, ., 6, ., 4, ., 1, 3 | 0.4682 | 0.9249 | 0.7659 | yes | N/A |
| Q9C718 | RH20_ARATH | 3, ., 6, ., 4, ., 1, 3 | 0.4570 | 0.8123 | 0.7345 | yes | N/A |
| Q755N4 | DBP2_ASHGO | 3, ., 6, ., 4, ., 1, 3 | 0.4834 | 0.7924 | 0.6445 | yes | N/A |
| Q2U070 | DBP2_ASPOR | 3, ., 6, ., 4, ., 1, 3 | 0.4843 | 0.8454 | 0.6913 | yes | N/A |
| P24783 | DBP2_YEAST | 3, ., 6, ., 4, ., 1, 3 | 0.4953 | 0.8101 | 0.6721 | yes | N/A |
| P24782 | DBP2_SCHPO | 3, ., 6, ., 4, ., 1, 3 | 0.4188 | 0.9293 | 0.7654 | yes | N/A |
| Q6C4D4 | DBP2_YARLI | 3, ., 6, ., 4, ., 1, 3 | 0.5068 | 0.8233 | 0.6757 | yes | N/A |
| Q4IF76 | DBP2_GIBZE | 3, ., 6, ., 4, ., 1, 3 | 0.4726 | 0.8278 | 0.6756 | yes | N/A |
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.6.4.13 | 0.914 |
| 3rd Layer | 3.6.4 | 0.921 |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 453 | |||
| PTZ00110 | 545 | PTZ00110, PTZ00110, helicase; Provisional | 2e-87 | |
| PTZ00110 | 545 | PTZ00110, PTZ00110, helicase; Provisional | 7e-80 | |
| COG0513 | 513 | COG0513, SrmB, Superfamily II DNA and RNA helicase | 8e-62 | |
| cd00268 | 203 | cd00268, DEADc, DEAD-box helicases | 4e-50 | |
| PRK11776 | 460 | PRK11776, PRK11776, ATP-dependent RNA helicase Dbp | 4e-47 | |
| PRK11634 | 629 | PRK11634, PRK11634, ATP-dependent RNA helicase Dea | 6e-45 | |
| cd00079 | 131 | cd00079, HELICc, Helicase superfamily c-terminal d | 1e-44 | |
| COG0513 | 513 | COG0513, SrmB, Superfamily II DNA and RNA helicase | 2e-39 | |
| PTZ00424 | 401 | PTZ00424, PTZ00424, helicase 45; Provisional | 3e-34 | |
| PRK01297 | 475 | PRK01297, PRK01297, ATP-dependent RNA helicase Rhl | 3e-32 | |
| PLN00206 | 518 | PLN00206, PLN00206, DEAD-box ATP-dependent RNA hel | 2e-31 | |
| PRK10590 | 456 | PRK10590, PRK10590, ATP-dependent RNA helicase Rhl | 8e-31 | |
| pfam00270 | 169 | pfam00270, DEAD, DEAD/DEAH box helicase | 1e-30 | |
| PRK04537 | 572 | PRK04537, PRK04537, ATP-dependent RNA helicase Rhl | 1e-29 | |
| pfam00271 | 78 | pfam00271, Helicase_C, Helicase conserved C-termin | 9e-29 | |
| PRK04837 | 423 | PRK04837, PRK04837, ATP-dependent RNA helicase Rhl | 1e-28 | |
| PRK11192 | 434 | PRK11192, PRK11192, ATP-dependent RNA helicase Srm | 1e-28 | |
| smart00490 | 82 | smart00490, HELICc, helicase superfamily c-termina | 2e-27 | |
| smart00487 | 201 | smart00487, DEXDc, DEAD-like helicases superfamily | 4e-26 | |
| PLN00206 | 518 | PLN00206, PLN00206, DEAD-box ATP-dependent RNA hel | 2e-25 | |
| PRK11192 | 434 | PRK11192, PRK11192, ATP-dependent RNA helicase Srm | 4e-23 | |
| PRK10590 | 456 | PRK10590, PRK10590, ATP-dependent RNA helicase Rhl | 1e-20 | |
| PRK04837 | 423 | PRK04837, PRK04837, ATP-dependent RNA helicase Rhl | 4e-18 | |
| PRK04537 | 572 | PRK04537, PRK04537, ATP-dependent RNA helicase Rhl | 2e-17 | |
| cd00046 | 144 | cd00046, DEXDc, DEAD-like helicases superfamily | 6e-17 | |
| COG0514 | 590 | COG0514, RecQ, Superfamily II DNA helicase [DNA re | 7e-16 | |
| TIGR01389 | 591 | TIGR01389, recQ, ATP-dependent DNA helicase RecQ | 5e-15 | |
| COG1111 | 542 | COG1111, MPH1, ERCC4-like helicases [DNA replicati | 9e-15 | |
| PTZ00424 | 401 | PTZ00424, PTZ00424, helicase 45; Provisional | 2e-13 | |
| TIGR00614 | 470 | TIGR00614, recQ_fam, ATP-dependent DNA helicase, R | 2e-13 | |
| PRK13766 | 773 | PRK13766, PRK13766, Hef nuclease; Provisional | 3e-12 | |
| PRK11776 | 460 | PRK11776, PRK11776, ATP-dependent RNA helicase Dbp | 4e-12 | |
| PRK01297 | 475 | PRK01297, PRK01297, ATP-dependent RNA helicase Rhl | 6e-11 | |
| COG1201 | 814 | COG1201, Lhr, Lhr-like helicases [General function | 9e-11 | |
| COG1205 | 851 | COG1205, COG1205, Distinct helicase family with a | 5e-10 | |
| PRK11057 | 607 | PRK11057, PRK11057, ATP-dependent DNA helicase Rec | 2e-09 | |
| COG1061 | 442 | COG1061, SSL2, DNA or RNA helicases of superfamily | 1e-08 | |
| cd00268 | 203 | cd00268, DEADc, DEAD-box helicases | 3e-08 | |
| TIGR03817 | 742 | TIGR03817, DECH_helic, helicase/secretion neighbor | 8e-08 | |
| PTZ00146 | 293 | PTZ00146, PTZ00146, fibrillarin; Provisional | 1e-06 | |
| PLN03137 | 1195 | PLN03137, PLN03137, ATP-dependent DNA helicase; Q4 | 3e-06 | |
| COG1204 | 766 | COG1204, COG1204, Superfamily II helicase [General | 1e-05 | |
| TIGR04121 | 803 | TIGR04121, DEXH_lig_assoc, DEXH box helicase, DNA | 1e-05 | |
| PRK01172 | 674 | PRK01172, PRK01172, ski2-like helicase; Provisiona | 2e-05 | |
| PRK06958 | 182 | PRK06958, PRK06958, single-stranded DNA-binding pr | 2e-05 | |
| PTZ00146 | 293 | PTZ00146, PTZ00146, fibrillarin; Provisional | 5e-05 | |
| COG1205 | 851 | COG1205, COG1205, Distinct helicase family with a | 4e-04 | |
| TIGR00643 | 630 | TIGR00643, recG, ATP-dependent DNA helicase RecG | 6e-04 | |
| PHA00370 | 297 | PHA00370, III, attachment protein | 7e-04 | |
| COG1201 | 814 | COG1201, Lhr, Lhr-like helicases [General function | 0.001 | |
| PTZ00146 | 293 | PTZ00146, PTZ00146, fibrillarin; Provisional | 0.001 | |
| PRK06958 | 182 | PRK06958, PRK06958, single-stranded DNA-binding pr | 0.001 | |
| COG1200 | 677 | COG1200, RecG, RecG-like helicase [DNA replication | 0.001 | |
| pfam07172 | 91 | pfam07172, GRP, Glycine rich protein family | 0.001 | |
| smart00487 | 201 | smart00487, DEXDc, DEAD-like helicases superfamily | 0.002 | |
| PHA00370 | 297 | PHA00370, III, attachment protein | 0.002 | |
| COG4907 | 595 | COG4907, COG4907, Predicted membrane protein [Func | 0.002 | |
| PRK06958 | 182 | PRK06958, PRK06958, single-stranded DNA-binding pr | 0.003 | |
| pfam05918 | 543 | pfam05918, API5, Apoptosis inhibitory protein 5 (A | 0.003 | |
| COG1199 | 654 | COG1199, DinG, Rad3-related DNA helicases [Transcr | 0.003 | |
| pfam07466 | 280 | pfam07466, DUF1517, Protein of unknown function (D | 0.003 | |
| COG1061 | 442 | COG1061, SSL2, DNA or RNA helicases of superfamily | 0.004 | |
| cd09639 | 353 | cd09639, Cas3_I, CRISPR/Cas system-associated prot | 0.004 |
| >gnl|CDD|240273 PTZ00110, PTZ00110, helicase; Provisional | Back alignment and domain information |
|---|
Score = 276 bits (708), Expect = 2e-87
Identities = 118/214 (55%), Positives = 152/214 (71%), Gaps = 3/214 (1%)
Query: 229 QPDRQVLMWSATWPREVQKLAEDFL-DSYIQINIGSLTLSANHNIQQVVEVCAEHEKENK 287
+PDRQ LMWSATWP+EVQ LA D + + +N+GSL L+A HNI+Q V V EHEK K
Sbjct: 306 RPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEEHEKRGK 365
Query: 288 LFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFR 347
L LL I +D +K +IF ETK+ D +TK ++ GW A+ IHGDK Q+ER +VL EF+
Sbjct: 366 LKMLLQRIM-RDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFK 424
Query: 348 NGRAGILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQ 407
G++ I++ATDVA+RGLDV DVK+VINFD+PN EDY+HRIGRTGR+ G SYTF T
Sbjct: 425 TGKSPIMIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGASYTFLTPD 484
Query: 408 NSRQAKDLIDVLTESNHPVDPKLSALA-SRSGGS 440
R A+DL+ VL E+ PV P+L L+ RS G+
Sbjct: 485 KYRLARDLVKVLREAKQPVPPELEKLSNERSNGT 518
|
Length = 545 |
| >gnl|CDD|240273 PTZ00110, PTZ00110, helicase; Provisional | Back alignment and domain information |
|---|
Score = 257 bits (657), Expect = 7e-80
Identities = 117/243 (48%), Positives = 145/243 (59%), Gaps = 14/243 (5%)
Query: 1 TYKSSS----SGGSSRGTSRYGTSGGGGYGGSSRSGGYGGGYGGGSGGG--RFGDRGGRG 54
T SSS S G S + YG + + YGG G G GG G
Sbjct: 4 TDGSSSNGSVSSGPSNNYNSYGPYPDSSNPYGNYQANHQDNYGGFRPGYGNYSGGYGGFG 63
Query: 55 KNS----TMGGALRAIDWG--NLPPFEKNFFHPSPSVLNRSPHEVQAFRDKHQMT-LKG- 106
NS T+G L+ IDW NL PFEKNF+ P V S EV R + ++T + G
Sbjct: 64 MNSYGSSTLGKRLQPIDWKSINLVPFEKNFYKEHPEVSALSSKEVDEIRKEKEITIIAGE 123
Query: 107 NAPNPITEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLA 166
N P P+ F +FPDY+LK +K GF PTPIQ QGWPIA+SG +M+G+A+TGSGKTLA
Sbjct: 124 NVPKPVVSFEYTSFPDYILKSLKNAGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLA 183
Query: 167 YMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGSSTYLRSTCVYGGASK 226
++LPAIVHIN Q L+ GDGPIVLVLAPTRELA+QI+E FG+S+ +R+T YGG K
Sbjct: 184 FLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPK 243
Query: 227 GPQ 229
Q
Sbjct: 244 RGQ 246
|
Length = 545 |
| >gnl|CDD|223587 COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 208 bits (532), Expect = 8e-62
Identities = 79/207 (38%), Positives = 119/207 (57%), Gaps = 5/207 (2%)
Query: 230 PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGS-LTLSANHNIQQVVEVC-AEHEKENK 287
PDRQ L++SAT P ++++LA +L+ ++I + I+Q +E EK
Sbjct: 204 PDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLEL 263
Query: 288 LFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFR 347
L LL D DE + I+F TKR V+++ +S++ G+ +HGD Q+ERD L++F+
Sbjct: 264 LLKLLKDE---DEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFK 320
Query: 348 NGRAGILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQ 407
+G +LVATDVAARGLD+ DV VIN+D P + EDY+HRIGRTGR+ G + +F T++
Sbjct: 321 DGELRVLVATDVAARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEE 380
Query: 408 NSRQAKDLIDVLTESNHPVDPKLSALA 434
+ I+ E P L
Sbjct: 381 EEVKKLKRIEKRLERKLPSAVLLPLDE 407
|
Length = 513 |
| >gnl|CDD|238167 cd00268, DEADc, DEAD-box helicases | Back alignment and domain information |
|---|
Score = 168 bits (429), Expect = 4e-50
Identities = 51/115 (44%), Positives = 70/115 (60%), Gaps = 3/115 (2%)
Query: 115 FAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVH 174
F E +L+ + GF++PTPIQA+ P +SG +++G AQTGSGKT A+++P +
Sbjct: 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEK 60
Query: 175 INHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGSSTYLRSTCVYGGASKGPQ 229
++ DGP L+LAPTRELA QI EVAR G T L+ +YGG S Q
Sbjct: 61 LDPS---PKKDGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQ 112
|
A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region. Length = 203 |
| >gnl|CDD|236977 PRK11776, PRK11776, ATP-dependent RNA helicase DbpA; Provisional | Back alignment and domain information |
|---|
Score = 168 bits (428), Expect = 4e-47
Identities = 63/211 (29%), Positives = 114/211 (54%), Gaps = 9/211 (4%)
Query: 230 PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLF 289
RQ L++SAT+P + +++ F +++ + S I+Q + E+ L
Sbjct: 177 ARRQTLLFSATYPEGIAAISQRFQRDPVEVKVEST--HDLPAIEQRFYEVSPDERLPALQ 234
Query: 290 GLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNG 349
LL + E+ ++F TK++ ++ ++ G++A+ +HGD Q++RD VL F N
Sbjct: 235 RLLLH--HQPES-CVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANR 291
Query: 350 RAGILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNS 409
+LVATDVAARGLD+ ++ VIN++ + E ++HRIGRTGR+ + G + + +
Sbjct: 292 SCSVLVATDVAARGLDIKALEAVINYELARDPEVHVHRIGRTGRAGSKGLALSLVAPEEM 351
Query: 410 RQAKDLIDVLTESNHPVDP-KLSALASRSGG 439
++A + D L ++ L +L+ SG
Sbjct: 352 QRANAIEDYL---GRKLNWEPLPSLSPLSGV 379
|
Length = 460 |
| >gnl|CDD|236941 PRK11634, PRK11634, ATP-dependent RNA helicase DeaD; Provisional | Back alignment and domain information |
|---|
Score = 165 bits (419), Expect = 6e-45
Identities = 110/361 (30%), Positives = 177/361 (49%), Gaps = 74/361 (20%)
Query: 113 TEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAI 172
T FA+ +L+ + G+++P+PIQA+ P ++G +++G+AQTGSGKT A+ LP +
Sbjct: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65
Query: 173 VHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGSSTYLRSTCV---YGGAS---- 225
+++ +LK P +LVLAPTRELA Q+ E DF S ++R V YGG
Sbjct: 66 HNLD--PELK---APQILVLAPTRELAVQVAEAMTDF--SKHMRGVNVVALYGGQRYDVQ 118
Query: 226 -----KGPQ-----PDR------------------------------------------- 232
+GPQ P R
Sbjct: 119 LRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIP 178
Query: 233 ---QVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLF 289
Q ++SAT P ++++ F+ ++ I S +++ +I Q K L
Sbjct: 179 EGHQTALFSATMPEAIRRITRRFMKEPQEVRIQS-SVTTRPDISQSYWTVWGMRKNEALV 237
Query: 290 GLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNG 349
L ++D + IIF TK ++ ++++ G+ + ++GD +Q R+ L+ ++G
Sbjct: 238 RFL---EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDG 294
Query: 350 RAGILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNS 409
R IL+ATDVAARGLDV+ + V+N+D P +SE Y+HRIGRTGR+ G + F +
Sbjct: 295 RLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRER 354
Query: 410 R 410
R
Sbjct: 355 R 355
|
Length = 629 |
| >gnl|CDD|238034 cd00079, HELICc, Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process | Back alignment and domain information |
|---|
Score = 152 bits (385), Expect = 1e-44
Identities = 54/133 (40%), Positives = 78/133 (58%), Gaps = 2/133 (1%)
Query: 271 NIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGI 330
I+Q V E EK L LL + K K +IF +K+ +D++ + ++ G +
Sbjct: 1 PIKQYVLPV-EDEKLEALLELLKEHLKKGG-KVLIFCPSKKMLDELAELLRKPGIKVAAL 58
Query: 331 HGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGR 390
HGD SQ+ER+ VLK+FR G +LVATDV ARG+D+ +V VIN+D P + Y+ RIGR
Sbjct: 59 HGDGSQEEREEVLKDFREGEIVVLVATDVIARGIDLPNVSVVINYDLPWSPSSYLQRIGR 118
Query: 391 TGRSDNTGTSYTF 403
GR+ GT+
Sbjct: 119 AGRAGQKGTAILL 131
|
Length = 131 |
| >gnl|CDD|223587 COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 148 bits (374), Expect = 2e-39
Identities = 51/139 (36%), Positives = 70/139 (50%), Gaps = 4/139 (2%)
Query: 92 EVQAFRDKHQMTLKGNAPNPITEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGS 151
+ H + L EFA +L+ +K GF+ PTPIQ P+ ++G
Sbjct: 8 RFVKLKSAHNVALSRGEEKTPPEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGR 67
Query: 152 NMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGS 211
+++G AQTG+GKT A++LP + I + K L+LAPTRELA QI E R G
Sbjct: 68 DVLGQAQTGTGKTAAFLLPLLQKILKSVERK---YVSALILAPTRELAVQIAEELRKLGK 124
Query: 212 STY-LRSTCVYGGASKGPQ 229
+ LR VYGG S Q
Sbjct: 125 NLGGLRVAVVYGGVSIRKQ 143
|
Length = 513 |
| >gnl|CDD|185609 PTZ00424, PTZ00424, helicase 45; Provisional | Back alignment and domain information |
|---|
Score = 131 bits (332), Expect = 3e-34
Identities = 70/187 (37%), Positives = 105/187 (56%), Gaps = 5/187 (2%)
Query: 230 PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLF 289
PD QV ++SAT P E+ +L F+ +I + L+ Q V V EKE F
Sbjct: 200 PDVQVALFSATMPNEILELTTKFMRDPKRILVKKDELTLEGIRQFYVAV----EKEEWKF 255
Query: 290 GLLNDI-SSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRN 348
L D+ + + II+ T+RKVD +TK + + +HGD Q++RD +++EFR+
Sbjct: 256 DTLCDLYETLTITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRS 315
Query: 349 GRAGILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQN 408
G +L+ TD+ ARG+DV V VIN+D P + E+YIHRIGR+GR G + F T +
Sbjct: 316 GSTRVLITTDLLARGIDVQQVSLVINYDLPASPENYIHRIGRSGRFGRKGVAINFVTPDD 375
Query: 409 SRQAKDL 415
Q K++
Sbjct: 376 IEQLKEI 382
|
Length = 401 |
| >gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Score = 127 bits (320), Expect = 3e-32
Identities = 61/184 (33%), Positives = 101/184 (54%), Gaps = 4/184 (2%)
Query: 228 PQPDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENK 287
+ +RQ L++SAT+ +V LA+ + + I + A+ ++Q V A +K
Sbjct: 267 RKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENV-ASDTVEQHVYAVAGSDKYKL 325
Query: 288 LFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFR 347
L+ L+ + ++FA K +V +I + + G A + GD Q +R L+ FR
Sbjct: 326 LYNLVTQ---NPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFR 382
Query: 348 NGRAGILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQ 407
G+ +LVATDVA RG+ +D + VINF P + +DY+HRIGRTGR+ +G S +F +
Sbjct: 383 EGKIRVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGVSISFAGED 442
Query: 408 NSRQ 411
++ Q
Sbjct: 443 DAFQ 446
|
Length = 475 |
| >gnl|CDD|215103 PLN00206, PLN00206, DEAD-box ATP-dependent RNA helicase; Provisional | Back alignment and domain information |
|---|
Score = 125 bits (316), Expect = 2e-31
Identities = 75/217 (34%), Positives = 113/217 (52%), Gaps = 11/217 (5%)
Query: 228 PQPDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENK 287
QP QVL++SAT EV+K A I I+IG+ N ++Q+ +K+ K
Sbjct: 299 SQP--QVLLFSATVSPEVEKFASSLAKDIILISIGNPN-RPNKAVKQLAIWVETKQKKQK 355
Query: 288 LFGLLNDISSKDENK--TIIFAETKRKVDKITKSIQ-NYGWAAVGIHGDKSQQERDYVLK 344
LF +L SK K ++F ++ D + +I G A+ IHG+KS +ER V+K
Sbjct: 356 LFDIL---KSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMK 412
Query: 345 EFRNGRAGILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFF 404
F G ++VAT V RG+D+ V+ VI FD PN ++YIH+IGR R GT+ F
Sbjct: 413 SFLVGEVPVIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTAIVFV 472
Query: 405 TQQNSRQAKDLIDVLTESNHPVDPKLSALASRSGGSG 441
+++ +L+ +L S + +L SR GSG
Sbjct: 473 NEEDRNLFPELVALLKSSGAAIPREL--ANSRYLGSG 507
|
Length = 518 |
| >gnl|CDD|236722 PRK10590, PRK10590, ATP-dependent RNA helicase RhlE; Provisional | Back alignment and domain information |
|---|
Score = 123 bits (310), Expect = 8e-31
Identities = 59/169 (34%), Positives = 98/169 (57%), Gaps = 4/169 (2%)
Query: 230 PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLF 289
RQ L++SAT+ +++ LAE L + ++I + +A+ + Q V + K L
Sbjct: 179 AKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRN-TASEQVTQHVHFVDKKRKRELLS 237
Query: 290 GLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNG 349
+ I + + ++F TK + + + + G + IHG+KSQ R L +F++G
Sbjct: 238 QM---IGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSG 294
Query: 350 RAGILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTG 398
+LVATD+AARGLD++++ V+N++ PN EDY+HRIGRTGR+ TG
Sbjct: 295 DIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATG 343
|
Length = 456 |
| >gnl|CDD|215832 pfam00270, DEAD, DEAD/DEAH box helicase | Back alignment and domain information |
|---|
Score = 115 bits (291), Expect = 1e-30
Identities = 42/93 (45%), Positives = 53/93 (56%), Gaps = 5/93 (5%)
Query: 137 TPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTR 196
TPIQAQ P +SG +++ A TGSGKTLA++LP + + L GP LVLAPTR
Sbjct: 1 TPIQAQAIPAILSGKDVLVQAPTGSGKTLAFLLPILQAL-----LPKKGGPQALVLAPTR 55
Query: 197 ELAQQIQEVARDFGSSTYLRSTCVYGGASKGPQ 229
ELA+QI E + LR + GG S Q
Sbjct: 56 ELAEQIYEELKKLFKILGLRVALLTGGTSLKEQ 88
|
Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. Length = 169 |
| >gnl|CDD|235307 PRK04537, PRK04537, ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Score = 121 bits (304), Expect = 1e-29
Identities = 71/202 (35%), Positives = 122/202 (60%), Gaps = 5/202 (2%)
Query: 232 RQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGL 291
RQ L++SAT V +LA + ++ ++ + + T++A ++Q + A+ EK+ L GL
Sbjct: 193 RQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAAR-VRQRIYFPADEEKQTLLLGL 251
Query: 292 LNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRA 351
L S + +T++F TK V+++ ++++ +G+ + GD Q++R+ +L F+ G+
Sbjct: 252 L---SRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQL 308
Query: 352 GILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQ 411
ILVATDVAARGL +D VK+V N+D P ++EDY+HRIGRT R G + +F ++ +
Sbjct: 309 EILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMS 368
Query: 412 AKDLIDVLTESNHPVDPKLSAL 433
D I+ E PV+P + L
Sbjct: 369 LPD-IEAYIEQKIPVEPVTAEL 389
|
Length = 572 |
| >gnl|CDD|201125 pfam00271, Helicase_C, Helicase conserved C-terminal domain | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 9e-29
Identities = 39/76 (51%), Positives = 53/76 (69%)
Query: 318 KSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVINFDY 377
K ++ G +HG SQ+ER+ +L++FRNG++ +LVATDVA RG+D+ DV VIN+D
Sbjct: 1 KLLRKPGIKVARLHGGLSQEEREEILEDFRNGKSKVLVATDVAGRGIDLPDVNLVINYDL 60
Query: 378 PNNSEDYIHRIGRTGR 393
P N YI RIGR GR
Sbjct: 61 PWNPASYIQRIGRAGR 76
|
The Prosite family is restricted to DEAD/H helicases, whereas this domain family is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. Length = 78 |
| >gnl|CDD|235314 PRK04837, PRK04837, ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Score = 116 bits (294), Expect = 1e-28
Identities = 65/190 (34%), Positives = 100/190 (52%), Gaps = 31/190 (16%)
Query: 228 PQP-DRQVLMWSATWPREVQKLAEDFLDS--YIQINIGSLTLSANHNIQQVVEVCAEHE- 283
P R +++SAT V++LA + +++ Y+++ T H I++ E
Sbjct: 186 PPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQKT---GHRIKE--------EL 234
Query: 284 ----KENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIH------GD 333
E K+ L I + ++ IIFA TK + ++I +G A H GD
Sbjct: 235 FYPSNEEKMRLLQTLIEEEWPDRAIIFANTKHRCEEI------WGHLAADGHRVGLLTGD 288
Query: 334 KSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGR 393
+Q++R +L+EF G ILVATDVAARGL + V V N+D P++ EDY+HRIGRTGR
Sbjct: 289 VAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGR 348
Query: 394 SDNTGTSYTF 403
+ +G S +
Sbjct: 349 AGASGHSISL 358
|
Length = 423 |
| >gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional | Back alignment and domain information |
|---|
Score = 116 bits (294), Expect = 1e-28
Identities = 57/169 (33%), Positives = 94/169 (55%), Gaps = 4/169 (2%)
Query: 232 RQVLMWSATWPRE-VQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFG 290
+Q L++SAT + VQ AE L+ +++ + I Q + E + L
Sbjct: 179 KQTLLFSATLEGDAVQDFAERLLNDPVEVEAEP-SRRERKKIHQWYYRADDLEHKTAL-- 235
Query: 291 LLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGR 350
L + + + ++I+F T+ +V ++ ++ G + G+ Q +R+ +K +GR
Sbjct: 236 LCHLLKQPEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGR 295
Query: 351 AGILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGT 399
+LVATDVAARG+D+DDV VINFD P +++ Y+HRIGRTGR+ GT
Sbjct: 296 VNVLVATDVAARGIDIDDVSHVINFDMPRSADTYLHRIGRTGRAGRKGT 344
|
Length = 434 |
| >gnl|CDD|197757 smart00490, HELICc, helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 2e-27
Identities = 35/80 (43%), Positives = 51/80 (63%)
Query: 314 DKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVI 373
+++ + ++ G +HG SQ+ER+ +L +F NG+ +LVATDVA RGLD+ V VI
Sbjct: 1 EELAELLKELGIKVARLHGGLSQEEREEILDKFNNGKIKVLVATDVAERGLDLPGVDLVI 60
Query: 374 NFDYPNNSEDYIHRIGRTGR 393
+D P + YI RIGR GR
Sbjct: 61 IYDLPWSPASYIQRIGRAGR 80
|
Length = 82 |
| >gnl|CDD|214692 smart00487, DEXDc, DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 4e-26
Identities = 43/106 (40%), Positives = 59/106 (55%), Gaps = 7/106 (6%)
Query: 128 VKRQGFDRPTPIQAQGWPIAMSG-SNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDG 186
+++ GF+ P Q + +SG +++ A TGSGKTLA +LPA+ LK G G
Sbjct: 1 IEKFGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEA------LKRGKG 54
Query: 187 PIVLVLAPTRELAQQIQEVARDFGSSTYLRSTCVYGGASKGPQPDR 232
VLVL PTRELA+Q E + G S L+ +YGG SK Q +
Sbjct: 55 GRVLVLVPTRELAEQWAEELKKLGPSLGLKVVGLYGGDSKREQLRK 100
|
Length = 201 |
| >gnl|CDD|215103 PLN00206, PLN00206, DEAD-box ATP-dependent RNA helicase; Provisional | Back alignment and domain information |
|---|
Score = 108 bits (271), Expect = 2e-25
Identities = 48/141 (34%), Positives = 78/141 (55%), Gaps = 9/141 (6%)
Query: 89 SPHEVQAFRDKHQMTLKGNA-PNPITEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIA 147
S + + R K ++ +KG A P PI F+ P +L ++ G++ PTPIQ Q P A
Sbjct: 96 SSSQAELLRRKLEIHVKGEAVPPPILSFSSCGLPPKLLLNLETAGYEFPTPIQMQAIPAA 155
Query: 148 MSGSNMVGVAQTGSGKTLAYMLPAI-----VHINHQSQLKPGDGPIVLVLAPTRELAQQI 202
+SG +++ A TGSGKT ++++P I + H S+ + P+ +VL PTREL Q+
Sbjct: 156 LSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRN---PLAMVLTPTRELCVQV 212
Query: 203 QEVARDFGSSTYLRSTCVYGG 223
++ A+ G ++ V GG
Sbjct: 213 EDQAKVLGKGLPFKTALVVGG 233
|
Length = 518 |
| >gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (252), Expect = 4e-23
Identities = 44/119 (36%), Positives = 72/119 (60%), Gaps = 1/119 (0%)
Query: 113 TEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAI 172
T F+E + +L+ ++ +G+ RPT IQA+ P A+ G +++G A TG+GKT A++LPA+
Sbjct: 1 TTFSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPAL 60
Query: 173 VHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGSSTYLRSTCVYGGASKGPQPD 231
H+ + K G P +L+L PTRELA Q+ + AR+ T+L + GG + +
Sbjct: 61 QHLLDFPRRKSGP-PRILILTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAE 118
|
Length = 434 |
| >gnl|CDD|236722 PRK10590, PRK10590, ATP-dependent RNA helicase RhlE; Provisional | Back alignment and domain information |
|---|
Score = 93.7 bits (233), Expect = 1e-20
Identities = 45/107 (42%), Positives = 62/107 (57%), Gaps = 1/107 (0%)
Query: 124 VLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKP 183
+L+ V QG+ PTPIQ Q P + G +++ AQTG+GKT + LP + H+ +
Sbjct: 12 ILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAK 71
Query: 184 GDGPI-VLVLAPTRELAQQIQEVARDFGSSTYLRSTCVYGGASKGPQ 229
G P+ L+L PTRELA QI E RD+ +RS V+GG S PQ
Sbjct: 72 GRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQ 118
|
Length = 456 |
| >gnl|CDD|235314 PRK04837, PRK04837, ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Score = 85.8 bits (213), Expect = 4e-18
Identities = 46/131 (35%), Positives = 70/131 (53%), Gaps = 11/131 (8%)
Query: 113 TEFAEANFPDY-----VLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAY 167
T E F D+ V++ ++++GF TPIQA P+ ++G ++ G AQTG+GKT+A+
Sbjct: 3 THLTEQKFSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAF 62
Query: 168 MLPAIVH---INHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGSSTYLRSTCVYGGA 224
L A H + + + + P L++APTRELA QI A +T L+ YGG
Sbjct: 63 -LTATFHYLLSHPAPEDRKVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGD 121
Query: 225 SKGPQPDRQVL 235
Q +VL
Sbjct: 122 GYDKQ--LKVL 130
|
Length = 423 |
| >gnl|CDD|235307 PRK04537, PRK04537, ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Score = 84.2 bits (208), Expect = 2e-17
Identities = 53/130 (40%), Positives = 76/130 (58%), Gaps = 8/130 (6%)
Query: 111 PITE--FAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYM 168
P+T+ F+ + +L ++ GF R TPIQA P+A+ G ++ G AQTG+GKTLA++
Sbjct: 5 PLTDLTFSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFL 64
Query: 169 LPAIVHINHQSQL---KPGDGPIVLVLAPTRELAQQIQEVARDFGSSTYLRSTCVYGGAS 225
+ + + + L KP D P L+LAPTRELA QI + A FG+ LR VYGG
Sbjct: 65 VAVMNRLLSRPALADRKPED-PRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVD 123
Query: 226 KGPQPDRQVL 235
Q R++L
Sbjct: 124 YDKQ--RELL 131
|
Length = 572 |
| >gnl|CDD|238005 cd00046, DEXDc, DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Score = 77.0 bits (190), Expect = 6e-17
Identities = 30/79 (37%), Positives = 41/79 (51%), Gaps = 7/79 (8%)
Query: 151 SNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFG 210
+++ A TGSGKTLA +LP + L G VLVLAPTRELA Q+ E ++
Sbjct: 1 RDVLLAAPTGSGKTLAALLPIL------ELLDSLKGGQVLVLAPTRELANQVAERLKELF 54
Query: 211 SSTYLRSTCVYGGASKGPQ 229
++ + GG S Q
Sbjct: 55 -GEGIKVGYLIGGTSIKQQ 72
|
A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region. Length = 144 |
| >gnl|CDD|223588 COG0514, RecQ, Superfamily II DNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 79.6 bits (197), Expect = 7e-16
Identities = 48/191 (25%), Positives = 87/191 (45%), Gaps = 14/191 (7%)
Query: 232 RQVLMW-SATWPREVQK--LAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKL 288
++ +AT V+ + L GS +VVE E ++L
Sbjct: 166 NPPVLALTATATPRVRDDIREQLGLQDANIF-RGSFDRPNLAL--KVVEK---GEPSDQL 219
Query: 289 FGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRN 348
L + ++ II+ T++KV+++ + ++ G +A H S +ER+ V + F N
Sbjct: 220 AFLATVLPQLSKS-GIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLN 278
Query: 349 GRAGILVATDVAARGLDVD--DVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQ 406
++VAT A G+ +D DV+FVI++D P + E Y GR GR + ++
Sbjct: 279 DEIKVMVAT--NAFGMGIDKPDVRFVIHYDLPGSIESYYQETGRAGRDGLPAEAILLYSP 336
Query: 407 QNSRQAKDLID 417
++ R + LI+
Sbjct: 337 EDIRWQRYLIE 347
|
Length = 590 |
| >gnl|CDD|130456 TIGR01389, recQ, ATP-dependent DNA helicase RecQ | Back alignment and domain information |
|---|
Score = 77.0 bits (190), Expect = 5e-15
Identities = 39/147 (26%), Positives = 71/147 (48%), Gaps = 3/147 (2%)
Query: 283 EKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYV 342
+K NK LL+ + II+A +++KV+++ + +++ G +A+ H S + R
Sbjct: 207 KKNNKQKFLLDYLKKHRGQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAEN 266
Query: 343 LKEFRNGRAGILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYT 402
++F ++VAT+ G+D +V+FVI++D P N E Y GR GR +
Sbjct: 267 QEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDMPGNLESYYQEAGRAGRDGLPAEAIL 326
Query: 403 FFTQQNSRQAKDLIDVLTESNHPVDPK 429
++ + K I +S D K
Sbjct: 327 LYSPADIALLKRRI---EQSEADDDYK 350
|
The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ [DNA metabolism, DNA replication, recombination, and repair]. Length = 591 |
| >gnl|CDD|224036 COG1111, MPH1, ERCC4-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 76.2 bits (188), Expect = 9e-15
Identities = 48/159 (30%), Positives = 74/159 (46%), Gaps = 17/159 (10%)
Query: 268 ANHNIQQVVEVCAEHEKENKLFGLLNDISSK-DENKTIIFAETKRKVDKITKSIQN---- 322
A + + E EH K KL +L + K +++ I+F E + ++I ++
Sbjct: 333 ALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIK 392
Query: 323 -----YGWAAVGIHGDK--SQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVINF 375
G A+ GDK SQ+E+ ++ +FR G +LVAT V GLD+ +V VI +
Sbjct: 393 ARVRFIGQASRE--GDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFY 450
Query: 376 DYPNNSE-DYIHRIGRTGRSDNTGTSYTFFTQQNSRQAK 413
+ P SE I R GRTGR G T+ +A
Sbjct: 451 E-PVPSEIRSIQRKGRTGRKRK-GRVVVLVTEGTRDEAY 487
|
Length = 542 |
| >gnl|CDD|185609 PTZ00424, PTZ00424, helicase 45; Provisional | Back alignment and domain information |
|---|
Score = 71.4 bits (175), Expect = 2e-13
Identities = 38/125 (30%), Positives = 63/125 (50%), Gaps = 5/125 (4%)
Query: 101 QMTLKGNAPNPITEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTG 160
T++ N + F + +L+ + GF++P+ IQ +G + G + +G AQ+G
Sbjct: 16 TGTIESNYDEIVDSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSG 75
Query: 161 SGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGSSTYLRSTCV 220
+GKT +++ A+ I++ L+LAPTRELAQQIQ+V G +R
Sbjct: 76 TGKTATFVIAALQLIDYDLN-----ACQALILAPTRELAQQIQKVVLALGDYLKVRCHAC 130
Query: 221 YGGAS 225
GG
Sbjct: 131 VGGTV 135
|
Length = 401 |
| >gnl|CDD|129701 TIGR00614, recQ_fam, ATP-dependent DNA helicase, RecQ family | Back alignment and domain information |
|---|
Score = 71.7 bits (176), Expect = 2e-13
Identities = 73/325 (22%), Positives = 123/325 (37%), Gaps = 84/325 (25%)
Query: 138 PIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRE 197
P+Q + + G + V TG GK+L Y LPA+ I LV++P
Sbjct: 14 PVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALC-----------SDGITLVISPLIS 62
Query: 198 LAQ-QIQEVARDFGSSTYLRST-------CVYGGASKGPQ-------PDRQVLMWSATWP 242
L + Q+ ++ +T+L S+ V K + P++ S
Sbjct: 63 LMEDQVLQLKASGIPATFLNSSQSKEQQKNVLTDL-KDGKIKLLYVTPEK--CSASN--- 116
Query: 243 REVQKLAE--------------------DFLDSYIQIN----------IGSLTLSANHNI 272
R +Q L E DF Y + I +LT +A+ ++
Sbjct: 117 RLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKALGSLKQKFPNVPIMALTATASPSV 176
Query: 273 QQVVEVC---------------------AEHEKENKLFGLLNDISSKDENKT-IIFAETK 310
++ + + L LL I + + K+ II+ ++
Sbjct: 177 REDILRQLNLKNPQIFCTSFDRPNLYYEVRRKTPKILEDLLRFIRKEFKGKSGIIYCPSR 236
Query: 311 RKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVK 370
+K +++T S+QN G AA H RD V +F+ ++VAT G++ DV+
Sbjct: 237 KKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVR 296
Query: 371 FVINFDYPNNSEDYIHRIGRTGRSD 395
FVI++ P + E Y GR GR
Sbjct: 297 FVIHYSLPKSMESYYQESGRAGRDG 321
|
All proteins in this family for which functions are known are 3'-5' DNA-DNA helicases. These proteins are used for recombination, recombinational repair, and possibly maintenance of chromosome stability. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 470 |
| >gnl|CDD|237496 PRK13766, PRK13766, Hef nuclease; Provisional | Back alignment and domain information |
|---|
Score = 68.4 bits (168), Expect = 3e-12
Identities = 45/124 (36%), Positives = 64/124 (51%), Gaps = 11/124 (8%)
Query: 281 EHEKENKLFGLLNDI-SSKDENKTIIFAETKRKVDKITKSIQNYGWAA---VG---IHGD 333
EH K KL ++ + +++ I+F + + +KI ++ G A VG GD
Sbjct: 345 EHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDGD 404
Query: 334 K--SQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVINFDYPNNSE-DYIHRIGR 390
K SQ+E+ +L +FR G +LV+T VA GLD+ V VI F P SE I R GR
Sbjct: 405 KGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVI-FYEPVPSEIRSIQRKGR 463
Query: 391 TGRS 394
TGR
Sbjct: 464 TGRQ 467
|
Length = 773 |
| >gnl|CDD|236977 PRK11776, PRK11776, ATP-dependent RNA helicase DbpA; Provisional | Back alignment and domain information |
|---|
Score = 67.5 bits (166), Expect = 4e-12
Identities = 35/101 (34%), Positives = 53/101 (52%), Gaps = 16/101 (15%)
Query: 113 TEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAI 172
T F+ P +L + G+ TPIQAQ P ++G +++ A+TGSGKT A+ L +
Sbjct: 4 TAFSTLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLL 63
Query: 173 VHINH-----QSQLKPGDGPIVLVLAPTRELAQQI-QEVAR 207
++ Q+ LVL PTRELA Q+ +E+ R
Sbjct: 64 QKLDVKRFRVQA----------LVLCPTRELADQVAKEIRR 94
|
Length = 460 |
| >gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Score = 63.8 bits (155), Expect = 6e-11
Identities = 38/114 (33%), Positives = 56/114 (49%), Gaps = 4/114 (3%)
Query: 113 TEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAI 172
T F + N ++ + GF TPIQAQ ++G + +G AQTG+GKT A+++ I
Sbjct: 87 TRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISII 146
Query: 173 VHINH---QSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGSSTYLRSTCVYGG 223
+ + G+ P L++APTREL QI + A T L GG
Sbjct: 147 NQLLQTPPPKERYMGE-PRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGG 199
|
Length = 475 |
| >gnl|CDD|224122 COG1201, Lhr, Lhr-like helicases [General function prediction only] | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 9e-11
Identities = 27/80 (33%), Positives = 40/80 (50%)
Query: 125 LKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPG 184
++E ++ F TP Q P SG N++ +A TGSGKT A LP I + + K
Sbjct: 12 VREWFKRKFTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLE 71
Query: 185 DGPIVLVLAPTRELAQQIQE 204
DG L ++P + L I+
Sbjct: 72 DGIYALYISPLKALNNDIRR 91
|
Length = 814 |
| >gnl|CDD|224126 COG1205, COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] | Back alignment and domain information |
|---|
Score = 61.3 bits (149), Expect = 5e-10
Identities = 32/129 (24%), Positives = 48/129 (37%), Gaps = 9/129 (6%)
Query: 100 HQMTLKGNAPNPITEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQT 159
++ +EF E VK G +R Q + G N+V T
Sbjct: 37 RDPEIEARPGKT-SEFPELRDESLKSALVKA-GIERLYSHQVDALRLIREGRNVVVTTGT 94
Query: 160 GSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGSSTYLRSTC 219
GSGKT +++LP + H+ + L+L PT LA E R+ S + T
Sbjct: 95 GSGKTESFLLPILDHLLRDPSAR------ALLLYPTNALANDQAERLRELISDLPGKVTF 148
Query: 220 -VYGGASKG 227
Y G +
Sbjct: 149 GRYTGDTPP 157
|
Length = 851 |
| >gnl|CDD|182933 PRK11057, PRK11057, ATP-dependent DNA helicase RecQ; Provisional | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 2e-09
Identities = 29/90 (32%), Positives = 45/90 (50%)
Query: 304 IIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARG 363
II+ ++ KV+ +Q+ G +A H R V + F+ I+VAT G
Sbjct: 240 IIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMG 299
Query: 364 LDVDDVKFVINFDYPNNSEDYIHRIGRTGR 393
++ +V+FV++FD P N E Y GR GR
Sbjct: 300 INKPNVRFVVHFDIPRNIESYYQETGRAGR 329
|
Length = 607 |
| >gnl|CDD|223989 COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 1e-08
Identities = 37/153 (24%), Positives = 64/153 (41%), Gaps = 5/153 (3%)
Query: 243 REVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENK 302
+ ++ + ++ TL A + +++ A K + GLL + D K
Sbjct: 230 EDEEREYAKESARFRELLRARGTLRAENEARRIAI--ASERKIAAVRGLLLKHARGD--K 285
Query: 303 TIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAAR 362
T+IFA +I K G I G+ ++ER+ +L+ FR G +LV V
Sbjct: 286 TLIFASDVEHAYEIAKLFLAPGIVEA-ITGETPKEEREAILERFRTGGIKVLVTVKVLDE 344
Query: 363 GLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSD 395
G+D+ D +I + +I R+GR R
Sbjct: 345 GVDIPDADVLIILRPTGSRRLFIQRLGRGLRPA 377
|
Length = 442 |
| >gnl|CDD|238167 cd00268, DEADc, DEAD-box helicases | Back alignment and domain information |
|---|
Score = 53.3 bits (129), Expect = 3e-08
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 230 PDRQVLMWSATWPREVQKLAEDFLDSYIQIN 260
DRQ L++SAT P+EV+ LA FL + ++I
Sbjct: 173 KDRQTLLFSATMPKEVRDLARKFLRNPVRIL 203
|
A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region. Length = 203 |
| >gnl|CDD|234365 TIGR03817, DECH_helic, helicase/secretion neighborhood putative DEAH-box helicase | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 8e-08
Identities = 29/80 (36%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Query: 121 PDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQ 180
PD V+ ++ G RP QA+ +A +G ++V T SGK+LAY LP + S
Sbjct: 23 PD-VVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVL------SA 75
Query: 181 LKPGDGPIVLVLAPTRELAQ 200
L L LAPT+ LA
Sbjct: 76 LADDPRATALYLAPTKALAA 95
|
A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA. Length = 742 |
| >gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 1e-06
Identities = 26/55 (47%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 8 GGSSRGTSRYGTSGGGGYGGSSRSGGYGGGYGGGSGGGRFGDRGGRGKNSTMGGA 62
G G R G GGG GG GG GGG GGG G GR G GGRG G
Sbjct: 2 MGGGFGGGR-GGGRGGGGGGGRGGGGRGGGRGGGRGRGRGGGGGGRGGGGGGGPG 55
|
Length = 293 |
| >gnl|CDD|215597 PLN03137, PLN03137, ATP-dependent DNA helicase; Q4-like; Provisional | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 3e-06
Identities = 27/90 (30%), Positives = 45/90 (50%)
Query: 304 IIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARG 363
II+ ++ +K+ + +Q +G A HG +R +V K++ I+ AT G
Sbjct: 684 IIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMG 743
Query: 364 LDVDDVKFVINFDYPNNSEDYIHRIGRTGR 393
++ DV+FVI+ P + E Y GR GR
Sbjct: 744 INKPDVRFVIHHSLPKSIEGYHQECGRAGR 773
|
Length = 1195 |
| >gnl|CDD|224125 COG1204, COG1204, Superfamily II helicase [General function prediction only] | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 1e-05
Identities = 30/92 (32%), Positives = 41/92 (44%), Gaps = 12/92 (13%)
Query: 121 PDYVLKEVKRQGFD--RPTPIQAQGWPIAMSGSNMVGVAQTGSGKTL-AYMLPAIVHINH 177
D VL+ +K G D P Q +S N++ A TGSGKTL A + AI
Sbjct: 17 DDRVLEILKGDGIDELFN-PQQEAVEKGLLSDENVLISAPTGSGKTLIALL--AI----- 68
Query: 178 QSQLKPGDGPIVLVLAPTRELAQQIQEVARDF 209
S L G G +V + P + LA++ E
Sbjct: 69 LSTLLEGGGKVVYI-VPLKALAEEKYEEFSRL 99
|
Length = 766 |
| >gnl|CDD|234478 TIGR04121, DEXH_lig_assoc, DEXH box helicase, DNA ligase-associated | Back alignment and domain information |
|---|
Score = 47.5 bits (114), Expect = 1e-05
Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 129 KRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPI 188
+G+ P P Q + W A+ G + + +A TGSGKTLA LP+++ + KP G
Sbjct: 8 AARGW-TPRPFQLEMWAAALEGRSGLLIAPTGSGKTLAGFLPSLIDL--AGPEKPKKGLH 64
Query: 189 VLVLAPTRELAQQIQ 203
L + P R LA I
Sbjct: 65 TLYITPLRALAVDIA 79
|
Members of this protein family are DEAD/DEAH box helicases found associated with a bacterial ATP-dependent DNA ligase, part of a four-gene system that occurs in about 12 % of prokaryotic reference genomes. The actual motif in this family is DE[VILW]H. Length = 803 |
| >gnl|CDD|100801 PRK01172, PRK01172, ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 2e-05
Identities = 28/111 (25%), Positives = 42/111 (37%), Gaps = 14/111 (12%)
Query: 331 HGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVINFDYPNNSEDYI----- 385
H S ++R ++ + FRN ++VAT A G+++ + VI D I
Sbjct: 292 HAGLSNEQRRFIEEMFRNRYIKVIVATPTLAAGVNL-PARLVIVRDITRYGNGGIRYLSN 350
Query: 386 ----HRIGRTGRS--DNTGTSYTFFTQQNSRQAKDLIDVLTESNHPVDPKL 430
IGR GR D G Y + S A L+ PV +
Sbjct: 351 MEIKQMIGRAGRPGYDQYGIGYIYAASPASYDAAK--KYLSGEPEPVISYM 399
|
Length = 674 |
| >gnl|CDD|180777 PRK06958, PRK06958, single-stranded DNA-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 2e-05
Identities = 28/62 (45%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 6 SSGGSSRGTSRYGTSGGGGYGGSSRSGGYGGGYGGGSGGGRFGDRGGRGKNSTMGGALRA 65
GG G G GGGGYGG SRSGG GG GG GGG G G ++ GG
Sbjct: 118 GGGGDEGGYGGGGGGGGGGYGGESRSGGGGGRASGGGGGGAGG--GASRPSAPAGGGFDE 175
Query: 66 ID 67
+D
Sbjct: 176 MD 177
|
Length = 182 |
| >gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 5e-05
Identities = 25/49 (51%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 8 GGSSRGTSRYGTSGGGGYGGSSRSGGYGGGYGGGSGGGRFGDRGGRGKN 56
G RG G GGGG GG R GG G G GGG GG G GG GK
Sbjct: 10 RGGGRGGGGGGGRGGGGRGGG-RGGGRGRGRGGGGGGRGGGGGGGPGKV 57
|
Length = 293 |
| >gnl|CDD|224126 COG1205, COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 4e-04
Identities = 24/106 (22%), Positives = 46/106 (43%), Gaps = 9/106 (8%)
Query: 302 KTIIFAETKRKVDKITKSIQN--------YGWAAVGIHGDKSQQERDYVLKEFRNGRAGI 353
+T++F ++++V+ + S + A ++ER + EF+ G
Sbjct: 308 QTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGELLG 367
Query: 354 LVATDVAARGLDVDDVKFVINFDYPNNSE-DYIHRIGRTGRSDNTG 398
++AT+ G+D+ + VI + YP S + R GR GR
Sbjct: 368 VIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQES 413
|
Length = 851 |
| >gnl|CDD|233069 TIGR00643, recG, ATP-dependent DNA helicase RecG | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 6e-04
Identities = 37/124 (29%), Positives = 58/124 (46%), Gaps = 31/124 (25%)
Query: 315 KITKSIQNYGWAAVG-IHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVI 373
++ K+ Y VG +HG E++ V++EFR G ILVAT V G+DV
Sbjct: 475 RLKKAFPKY---NVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVGVDV------- 524
Query: 374 NFDYPN-------NSEDY----IHRI-GRTGRSDNTGTSYTFFTQQN--SRQAKDLIDVL 419
PN ++E + +H++ GR GR D+ SY +N S AK + V+
Sbjct: 525 ----PNATVMVIEDAERFGLSQLHQLRGRVGRGDH--QSYCLLVYKNPKSESAKKRLRVM 578
Query: 420 TESN 423
++
Sbjct: 579 ADTL 582
|
[DNA metabolism, DNA replication, recombination, and repair]. Length = 630 |
| >gnl|CDD|164795 PHA00370, III, attachment protein | Back alignment and domain information |
|---|
Score = 41.1 bits (96), Expect = 7e-04
Identities = 27/58 (46%), Positives = 30/58 (51%), Gaps = 7/58 (12%)
Query: 5 SSSGGSSRGTSRYGTSGGGGYGGSSRSGGYGGGYGGGS-GGGRFGDRGGRGKNSTMGG 61
+ GGS G G +GGG GG S G GG GGGS GGG G G GK+ T G
Sbjct: 89 TGEGGSDTG----GDTGGGNTGGGSGGGDTGGSGGGGSDGGGSEG--GSTGKSLTKEG 140
|
Length = 297 |
| >gnl|CDD|224122 COG1201, Lhr, Lhr-like helicases [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.001
Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 1/97 (1%)
Query: 298 KDENKTIIFAETKRKVDKITKSIQNYGWAAVGIH-GDKSQQERDYVLKEFRNGRAGILVA 356
K T+IF T+ +++ ++ G + +H G S++ R V + + G +VA
Sbjct: 251 KKHRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVA 310
Query: 357 TDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGR 393
T G+D+ D+ VI P + ++ RIGR G
Sbjct: 311 TSSLELGIDIGDIDLVIQLGSPKSVNRFLQRIGRAGH 347
|
Length = 814 |
| >gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.001
Identities = 22/48 (45%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Query: 7 SGGSSRGTSRYGTSGGGGYGGSSRSGGYGGGYGGGSGGGRFGDRGGRG 54
G RG R G GGG GG G GG G GGG G RGG G
Sbjct: 5 GFGGGRGGGRGGGGGGGRGGGGRGGGRGGGRGRGRGGGG--GGRGGGG 50
|
Length = 293 |
| >gnl|CDD|180777 PRK06958, PRK06958, single-stranded DNA-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 39.4 bits (92), Expect = 0.001
Identities = 22/45 (48%), Positives = 22/45 (48%)
Query: 18 GTSGGGGYGGSSRSGGYGGGYGGGSGGGRFGDRGGRGKNSTMGGA 62
G G GG GG GGYGGG GGG GG R G G GG
Sbjct: 110 GRGGSGGGGGGGDEGGYGGGGGGGGGGYGGESRSGGGGGRASGGG 154
|
Length = 182 |
| >gnl|CDD|224121 COG1200, RecG, RecG-like helicase [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 0.001
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 311 RKVDKITKSIQN-YGWAAVG-IHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDV 366
+ +++ + +++ VG +HG E+D V++ F+ G ILVAT V G+DV
Sbjct: 492 QAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVIEVGVDV 549
|
Length = 677 |
| >gnl|CDD|219320 pfam07172, GRP, Glycine rich protein family | Back alignment and domain information |
|---|
Score = 37.4 bits (87), Expect = 0.001
Identities = 22/42 (52%), Positives = 22/42 (52%)
Query: 7 SGGSSRGTSRYGTSGGGGYGGSSRSGGYGGGYGGGSGGGRFG 48
GG G G GGG YGG GG GGGY GG GGG G
Sbjct: 48 GGGGYGGGGGGGYGGGGYYGGGGGYGGGGGGYPGGGGGGYGG 89
|
This family of proteins includes several glycine rich proteins as well as two nodulins 16 and 24. The family also contains proteins that are induced in response to various stresses. Length = 91 |
| >gnl|CDD|214692 smart00487, DEXDc, DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Score = 39.4 bits (92), Expect = 0.002
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 230 PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQV 275
+ Q+L+ SAT P E++ L E FL+ + I++G I+Q
Sbjct: 159 KNVQLLLLSATPPEEIENLLELFLNDPVFIDVGFTP---LEPIEQF 201
|
Length = 201 |
| >gnl|CDD|164795 PHA00370, III, attachment protein | Back alignment and domain information |
|---|
Score = 39.5 bits (92), Expect = 0.002
Identities = 18/55 (32%), Positives = 24/55 (43%)
Query: 4 SSSSGGSSRGTSRYGTSGGGGYGGSSRSGGYGGGYGGGSGGGRFGDRGGRGKNST 58
+ G + G + G +GGG GG + G GG GGGS GG G +
Sbjct: 89 TGEGGSDTGGDTGGGNTGGGSGGGDTGGSGGGGSDGGGSEGGSTGKSLTKEGVGA 143
|
Length = 297 |
| >gnl|CDD|227244 COG4907, COG4907, Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Score = 39.9 bits (93), Expect = 0.002
Identities = 18/37 (48%), Positives = 21/37 (56%), Gaps = 6/37 (16%)
Query: 10 SSRGTSRYGTSGGGGYGGSSRSGGYGGGYGGGSGGGR 46
S+ +SR +S GGG G S GGG GGG GG R
Sbjct: 565 SAIASSRRSSSSGGGGGFS------GGGSGGGGGGAR 595
|
Length = 595 |
| >gnl|CDD|180777 PRK06958, PRK06958, single-stranded DNA-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 38.2 bits (89), Expect = 0.003
Identities = 26/56 (46%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 9 GSSRGTSRYGTSGGGGYGGSSRSGGYGGGYGGGSGGGRFGDRGGRGKNSTMGGALR 64
G S G G GG G GG GGYGG G GGGR GG G GGA R
Sbjct: 112 GGSGGGGGGGDEGGYGGGGGGGGGGYGGESRSGGGGGRASGGGGGGAG---GGASR 164
|
Length = 182 |
| >gnl|CDD|218811 pfam05918, API5, Apoptosis inhibitory protein 5 (API5) | Back alignment and domain information |
|---|
Score = 39.6 bits (92), Expect = 0.003
Identities = 13/32 (40%), Positives = 15/32 (46%)
Query: 15 SRYGTSGGGGYGGSSRSGGYGGGYGGGSGGGR 46
+ G YGG R+ G G G GGG G G
Sbjct: 507 GEGISKVGQSYGGRGRTRGRGRGGGGGRGRGY 538
|
This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterized by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in human chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors. Length = 543 |
| >gnl|CDD|224120 COG1199, DinG, Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 0.003
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 7/46 (15%)
Query: 157 AQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQI 202
A TG+GKTLAY+LPA+ + +G V++ T+ L +Q+
Sbjct: 41 APTGTGKTLAYLLPALAYARE-------EGKKVIISTRTKALQEQL 79
|
Length = 654 |
| >gnl|CDD|219420 pfam07466, DUF1517, Protein of unknown function (DUF1517) | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 0.003
Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 5/50 (10%)
Query: 4 SSSSGGSSRGTSRYGTSGGGGYGGSSRSGGYG-----GGYGGGSGGGRFG 48
S S +S +S GGG S GG+G +G G GGG FG
Sbjct: 11 GSFRAPSRSSSSPRSSSPGGGGYYGSPGGGFGFPFLIPFFGFGGGGGLFG 60
|
This family consists of several hypothetical glycine rich plant and bacterial proteins of around 300 residues in length. The function of this family is unknown. Length = 280 |
| >gnl|CDD|223989 COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 39.3 bits (92), Expect = 0.004
Identities = 23/79 (29%), Positives = 31/79 (39%), Gaps = 13/79 (16%)
Query: 156 VAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGSSTYL 215
V TG+GKT+ AI + LVL PT+EL Q E + F
Sbjct: 61 VLPTGAGKTVVAAE-AIAEL----------KRSTLVLVPTKELLDQWAEALKKFLLLNDE 109
Query: 216 RSTCVYGGASKGPQPDRQV 234
+YGG K +P +
Sbjct: 110 IG--IYGGGEKELEPAKVT 126
|
Length = 442 |
| >gnl|CDD|187770 cd09639, Cas3_I, CRISPR/Cas system-associated protein Cas3 | Back alignment and domain information |
|---|
Score = 39.0 bits (91), Expect = 0.004
Identities = 41/172 (23%), Positives = 66/172 (38%), Gaps = 27/172 (15%)
Query: 234 VLMWSATWPREVQKLAEDFLDSYIQ-----INIGSLTLSANHNIQQVVEVCAEHEKENKL 288
+LM SAT P FL Y + L L N + + + + L
Sbjct: 158 LLM-SATLP--------KFLKEYAEKIGYVEENEPLDLKPNERAPFIKIESDKVGEISSL 208
Query: 289 FGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAA--VGIHG-----DKSQQERDY 341
LL K I T + + + ++ G + IH D++++E +
Sbjct: 209 ERLLE--FIKKGGSVAIIVNTVDRAQEFYQQLKEKGPEEEIMLIHSRFTEKDRAKKEAE- 265
Query: 342 VLKEFRNGRAGILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGR 393
+L EF+ ++VAT V LD+ V +I P +S I R+GR R
Sbjct: 266 LLLEFKKSEKFVIVATQVIEASLDI-SVDVMITELAPIDS--LIQRLGRLHR 314
|
CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; DEAD/DEAH box helicase DNA helicase cas3'; Often but not always is fused to HD nuclease domain; signature gene for Type I. Length = 353 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 453 | |||
| KOG0331|consensus | 519 | 100.0 | ||
| PTZ00110 | 545 | helicase; Provisional | 100.0 | |
| KOG0336|consensus | 629 | 100.0 | ||
| KOG0333|consensus | 673 | 100.0 | ||
| KOG0339|consensus | 731 | 100.0 | ||
| PLN00206 | 518 | DEAD-box ATP-dependent RNA helicase; Provisional | 100.0 | |
| KOG0330|consensus | 476 | 100.0 | ||
| KOG0335|consensus | 482 | 100.0 | ||
| KOG0334|consensus | 997 | 100.0 | ||
| KOG0341|consensus | 610 | 100.0 | ||
| KOG0328|consensus | 400 | 100.0 | ||
| COG0513 | 513 | SrmB Superfamily II DNA and RNA helicases [DNA rep | 100.0 | |
| KOG0340|consensus | 442 | 100.0 | ||
| PRK04837 | 423 | ATP-dependent RNA helicase RhlB; Provisional | 100.0 | |
| KOG0338|consensus | 691 | 100.0 | ||
| PRK04537 | 572 | ATP-dependent RNA helicase RhlB; Provisional | 100.0 | |
| PRK10590 | 456 | ATP-dependent RNA helicase RhlE; Provisional | 100.0 | |
| KOG0326|consensus | 459 | 100.0 | ||
| PRK11776 | 460 | ATP-dependent RNA helicase DbpA; Provisional | 100.0 | |
| PRK11634 | 629 | ATP-dependent RNA helicase DeaD; Provisional | 100.0 | |
| KOG0342|consensus | 543 | 100.0 | ||
| KOG0343|consensus | 758 | 100.0 | ||
| KOG0345|consensus | 567 | 100.0 | ||
| PRK11192 | 434 | ATP-dependent RNA helicase SrmB; Provisional | 100.0 | |
| PRK01297 | 475 | ATP-dependent RNA helicase RhlB; Provisional | 100.0 | |
| KOG0344|consensus | 593 | 100.0 | ||
| KOG0348|consensus | 708 | 100.0 | ||
| KOG0346|consensus | 569 | 100.0 | ||
| KOG0332|consensus | 477 | 100.0 | ||
| PTZ00424 | 401 | helicase 45; Provisional | 100.0 | |
| KOG0347|consensus | 731 | 100.0 | ||
| KOG0327|consensus | 397 | 100.0 | ||
| TIGR03817 | 742 | DECH_helic helicase/secretion neighborhood putativ | 100.0 | |
| KOG0337|consensus | 529 | 100.0 | ||
| PLN03137 | 1195 | ATP-dependent DNA helicase; Q4-like; Provisional | 100.0 | |
| TIGR00614 | 470 | recQ_fam ATP-dependent DNA helicase, RecQ family. | 100.0 | |
| KOG4284|consensus | 980 | 100.0 | ||
| PRK11057 | 607 | ATP-dependent DNA helicase RecQ; Provisional | 100.0 | |
| KOG0350|consensus | 620 | 100.0 | ||
| TIGR01389 | 591 | recQ ATP-dependent DNA helicase RecQ. The ATP-depe | 100.0 | |
| PRK02362 | 737 | ski2-like helicase; Provisional | 100.0 | |
| PRK13767 | 876 | ATP-dependent helicase; Provisional | 100.0 | |
| TIGR00580 | 926 | mfd transcription-repair coupling factor (mfd). Al | 100.0 | |
| PRK00254 | 720 | ski2-like helicase; Provisional | 100.0 | |
| COG0514 | 590 | RecQ Superfamily II DNA helicase [DNA replication, | 100.0 | |
| PRK10917 | 681 | ATP-dependent DNA helicase RecG; Provisional | 100.0 | |
| PRK10689 | 1147 | transcription-repair coupling factor; Provisional | 100.0 | |
| TIGR00643 | 630 | recG ATP-dependent DNA helicase RecG. | 100.0 | |
| TIGR02621 | 844 | cas3_GSU0051 CRISPR-associated helicase Cas3, Anae | 100.0 | |
| COG1201 | 814 | Lhr Lhr-like helicases [General function predictio | 100.0 | |
| PRK01172 | 674 | ski2-like helicase; Provisional | 100.0 | |
| PHA02653 | 675 | RNA helicase NPH-II; Provisional | 100.0 | |
| PRK12898 | 656 | secA preprotein translocase subunit SecA; Reviewed | 100.0 | |
| KOG0329|consensus | 387 | 100.0 | ||
| TIGR01970 | 819 | DEAH_box_HrpB ATP-dependent helicase HrpB. This mo | 100.0 | |
| PRK11664 | 812 | ATP-dependent RNA helicase HrpB; Provisional | 100.0 | |
| PRK09751 | 1490 | putative ATP-dependent helicase Lhr; Provisional | 100.0 | |
| PRK09200 | 790 | preprotein translocase subunit SecA; Reviewed | 100.0 | |
| TIGR01587 | 358 | cas3_core CRISPR-associated helicase Cas3. This mo | 100.0 | |
| PRK09401 | 1176 | reverse gyrase; Reviewed | 100.0 | |
| PHA02558 | 501 | uvsW UvsW helicase; Provisional | 100.0 | |
| KOG0351|consensus | 941 | 100.0 | ||
| COG1202 | 830 | Superfamily II helicase, archaea-specific [General | 100.0 | |
| COG1204 | 766 | Superfamily II helicase [General function predicti | 100.0 | |
| PRK14701 | 1638 | reverse gyrase; Provisional | 99.98 | |
| KOG0352|consensus | 641 | 99.98 | ||
| TIGR00963 | 745 | secA preprotein translocase, SecA subunit. The pro | 99.98 | |
| TIGR03714 | 762 | secA2 accessory Sec system translocase SecA2. Memb | 99.98 | |
| KOG0349|consensus | 725 | 99.97 | ||
| COG1111 | 542 | MPH1 ERCC4-like helicases [DNA replication, recomb | 99.97 | |
| KOG0353|consensus | 695 | 99.97 | ||
| KOG0952|consensus | 1230 | 99.97 | ||
| TIGR03158 | 357 | cas3_cyano CRISPR-associated helicase, Cyano-type. | 99.97 | |
| COG1205 | 851 | Distinct helicase family with a unique C-terminal | 99.97 | |
| TIGR01054 | 1171 | rgy reverse gyrase. Generally, these gyrases are e | 99.97 | |
| PRK13766 | 773 | Hef nuclease; Provisional | 99.97 | |
| KOG0354|consensus | 746 | 99.96 | ||
| COG1200 | 677 | RecG RecG-like helicase [DNA replication, recombin | 99.96 | |
| PRK11131 | 1294 | ATP-dependent RNA helicase HrpA; Provisional | 99.96 | |
| TIGR00603 | 732 | rad25 DNA repair helicase rad25. All proteins in t | 99.95 | |
| PRK05580 | 679 | primosome assembly protein PriA; Validated | 99.95 | |
| KOG0951|consensus | 1674 | 99.95 | ||
| PRK09694 | 878 | helicase Cas3; Provisional | 99.95 | |
| PRK12906 | 796 | secA preprotein translocase subunit SecA; Reviewed | 99.95 | |
| TIGR01967 | 1283 | DEAH_box_HrpA ATP-dependent helicase HrpA. This mo | 99.94 | |
| TIGR00595 | 505 | priA primosomal protein N'. All proteins in this f | 99.93 | |
| PRK04914 | 956 | ATP-dependent helicase HepA; Validated | 99.93 | |
| COG1197 | 1139 | Mfd Transcription-repair coupling factor (superfam | 99.92 | |
| PRK13104 | 896 | secA preprotein translocase subunit SecA; Reviewed | 99.92 | |
| KOG0948|consensus | 1041 | 99.92 | ||
| KOG0947|consensus | 1248 | 99.92 | ||
| PRK12904 | 830 | preprotein translocase subunit SecA; Reviewed | 99.92 | |
| COG1061 | 442 | SSL2 DNA or RNA helicases of superfamily II [Trans | 99.92 | |
| COG4098 | 441 | comFA Superfamily II DNA/RNA helicase required for | 99.91 | |
| COG0556 | 663 | UvrB Helicase subunit of the DNA excision repair c | 99.91 | |
| TIGR00631 | 655 | uvrb excinuclease ABC, B subunit. This family is b | 99.91 | |
| KOG0950|consensus | 1008 | 99.9 | ||
| PRK13107 | 908 | preprotein translocase subunit SecA; Reviewed | 99.89 | |
| COG4581 | 1041 | Superfamily II RNA helicase [DNA replication, reco | 99.89 | |
| COG1203 | 733 | CRISPR-associated helicase Cas3 [Defense mechanism | 99.88 | |
| PRK12899 | 970 | secA preprotein translocase subunit SecA; Reviewed | 99.88 | |
| PRK12900 | 1025 | secA preprotein translocase subunit SecA; Reviewed | 99.88 | |
| PRK05298 | 652 | excinuclease ABC subunit B; Provisional | 99.87 | |
| PRK11448 | 1123 | hsdR type I restriction enzyme EcoKI subunit R; Pr | 99.86 | |
| COG1643 | 845 | HrpA HrpA-like helicases [DNA replication, recombi | 99.85 | |
| cd00268 | 203 | DEADc DEAD-box helicases. A diverse family of prot | 99.84 | |
| COG1198 | 730 | PriA Primosomal protein N' (replication factor Y) | 99.84 | |
| KOG0920|consensus | 924 | 99.83 | ||
| KOG0922|consensus | 674 | 99.81 | ||
| COG1110 | 1187 | Reverse gyrase [DNA replication, recombination, an | 99.8 | |
| cd00079 | 131 | HELICc Helicase superfamily c-terminal domain; ass | 99.8 | |
| TIGR01407 | 850 | dinG_rel DnaQ family exonuclease/DinG family helic | 99.8 | |
| KOG0923|consensus | 902 | 99.78 | ||
| PRK12326 | 764 | preprotein translocase subunit SecA; Reviewed | 99.78 | |
| PF00271 | 78 | Helicase_C: Helicase conserved C-terminal domain; | 99.77 | |
| PLN03142 | 1033 | Probable chromatin-remodeling complex ATPase chain | 99.72 | |
| KOG0924|consensus | 1042 | 99.72 | ||
| KOG0949|consensus | 1330 | 99.71 | ||
| PRK13103 | 913 | secA preprotein translocase subunit SecA; Reviewed | 99.69 | |
| PRK07246 | 820 | bifunctional ATP-dependent DNA helicase/DNA polyme | 99.67 | |
| KOG4150|consensus | 1034 | 99.67 | ||
| PRK12903 | 925 | secA preprotein translocase subunit SecA; Reviewed | 99.67 | |
| KOG0953|consensus | 700 | 99.65 | ||
| KOG0926|consensus | 1172 | 99.65 | ||
| CHL00122 | 870 | secA preprotein translocase subunit SecA; Validate | 99.64 | |
| KOG0925|consensus | 699 | 99.64 | ||
| smart00490 | 82 | HELICc helicase superfamily c-terminal domain. | 99.63 | |
| TIGR00348 | 667 | hsdR type I site-specific deoxyribonuclease, HsdR | 99.62 | |
| PF00270 | 169 | DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 | 99.62 | |
| KOG0951|consensus | 1674 | 99.6 | ||
| PRK08074 | 928 | bifunctional ATP-dependent DNA helicase/DNA polyme | 99.57 | |
| COG4096 | 875 | HsdR Type I site-specific restriction-modification | 99.56 | |
| PRK12902 | 939 | secA preprotein translocase subunit SecA; Reviewed | 99.52 | |
| COG4889 | 1518 | Predicted helicase [General function prediction on | 99.52 | |
| TIGR03117 | 636 | cas_csf4 CRISPR-associated DEAD/DEAH-box helicase | 99.47 | |
| KOG1123|consensus | 776 | 99.42 | ||
| COG1199 | 654 | DinG Rad3-related DNA helicases [Transcription / D | 99.41 | |
| KOG0387|consensus | 923 | 99.4 | ||
| PRK12901 | 1112 | secA preprotein translocase subunit SecA; Reviewed | 99.38 | |
| PF06862 | 442 | DUF1253: Protein of unknown function (DUF1253); In | 99.36 | |
| KOG2340|consensus | 698 | 99.3 | ||
| KOG0390|consensus | 776 | 99.29 | ||
| KOG0385|consensus | 971 | 99.25 | ||
| PRK14873 | 665 | primosome assembly protein PriA; Provisional | 99.23 | |
| TIGR00604 | 705 | rad3 DNA repair helicase (rad3). All proteins in t | 99.21 | |
| smart00487 | 201 | DEXDc DEAD-like helicases superfamily. | 99.17 | |
| TIGR02562 | 1110 | cas3_yersinia CRISPR-associated helicase Cas3. The | 99.07 | |
| KOG1000|consensus | 689 | 98.98 | ||
| KOG0384|consensus | 1373 | 98.98 | ||
| KOG0389|consensus | 941 | 98.94 | ||
| KOG0392|consensus | 1549 | 98.94 | ||
| COG0653 | 822 | SecA Preprotein translocase subunit SecA (ATPase, | 98.87 | |
| PF02399 | 824 | Herpes_ori_bp: Origin of replication binding prote | 98.83 | |
| KOG1002|consensus | 791 | 98.8 | ||
| PF04851 | 184 | ResIII: Type III restriction enzyme, res subunit; | 98.67 | |
| KOG0921|consensus | 1282 | 98.62 | ||
| smart00489 | 289 | DEXDc3 DEAD-like helicases superfamily. | 98.59 | |
| smart00488 | 289 | DEXDc2 DEAD-like helicases superfamily. | 98.59 | |
| PRK11747 | 697 | dinG ATP-dependent DNA helicase DinG; Provisional | 98.53 | |
| cd00046 | 144 | DEXDc DEAD-like helicases superfamily. A diverse f | 98.51 | |
| PF13307 | 167 | Helicase_C_2: Helicase C-terminal domain; PDB: 4A1 | 98.44 | |
| KOG4439|consensus | 901 | 98.35 | ||
| KOG0386|consensus | 1157 | 98.18 | ||
| PRK11747 | 697 | dinG ATP-dependent DNA helicase DinG; Provisional | 98.13 | |
| KOG0952|consensus | 1230 | 98.1 | ||
| KOG0391|consensus | 1958 | 98.05 | ||
| COG0553 | 866 | HepA Superfamily II DNA/RNA helicases, SNF2 family | 97.98 | |
| KOG0388|consensus | 1185 | 97.92 | ||
| PF07652 | 148 | Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR | 97.82 | |
| PF13245 | 76 | AAA_19: Part of AAA domain | 97.8 | |
| TIGR00596 | 814 | rad1 DNA repair protein (rad1). This family is bas | 97.78 | |
| COG0610 | 962 | Type I site-specific restriction-modification syst | 97.77 | |
| PF13086 | 236 | AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV | 97.55 | |
| PF07517 | 266 | SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011 | 97.43 | |
| smart00492 | 141 | HELICc3 helicase superfamily c-terminal domain. | 97.41 | |
| smart00491 | 142 | HELICc2 helicase superfamily c-terminal domain. | 97.38 | |
| KOG1802|consensus | 935 | 97.34 | ||
| PF00580 | 315 | UvrD-helicase: UvrD/REP helicase N-terminal domain | 97.26 | |
| PF00176 | 299 | SNF2_N: SNF2 family N-terminal domain; InterPro: I | 97.15 | |
| KOG1015|consensus | 1567 | 97.15 | ||
| COG3973 | 747 | Superfamily I DNA and RNA helicases [General funct | 97.08 | |
| PF13604 | 196 | AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL | 97.04 | |
| TIGR00376 | 637 | DNA helicase, putative. The gene product may repre | 96.97 | |
| PF02562 | 205 | PhoH: PhoH-like protein; InterPro: IPR003714 PhoH | 96.74 | |
| KOG1803|consensus | 649 | 96.7 | ||
| PTZ00146 | 293 | fibrillarin; Provisional | 96.58 | |
| PRK15483 | 986 | type III restriction-modification system StyLTI en | 96.55 | |
| PRK14873 | 665 | primosome assembly protein PriA; Provisional | 96.33 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 96.31 | |
| PF13871 | 278 | Helicase_C_4: Helicase_C-like | 96.28 | |
| PF12340 | 229 | DUF3638: Protein of unknown function (DUF3638); In | 96.28 | |
| PRK05580 | 679 | primosome assembly protein PriA; Validated | 96.27 | |
| TIGR00595 | 505 | priA primosomal protein N'. All proteins in this f | 96.22 | |
| PRK10917 | 681 | ATP-dependent DNA helicase RecG; Provisional | 96.07 | |
| PRK11054 | 684 | helD DNA helicase IV; Provisional | 95.98 | |
| PRK10536 | 262 | hypothetical protein; Provisional | 95.92 | |
| COG2805 | 353 | PilT Tfp pilus assembly protein, pilus retraction | 95.87 | |
| PRK13833 | 323 | conjugal transfer protein TrbB; Provisional | 95.78 | |
| PRK13894 | 319 | conjugal transfer ATPase TrbB; Provisional | 95.63 | |
| KOG1596|consensus | 317 | 95.61 | ||
| PRK10919 | 672 | ATP-dependent DNA helicase Rep; Provisional | 95.56 | |
| TIGR00643 | 630 | recG ATP-dependent DNA helicase RecG. | 95.44 | |
| COG1198 | 730 | PriA Primosomal protein N' (replication factor Y) | 95.38 | |
| COG1110 | 1187 | Reverse gyrase [DNA replication, recombination, an | 95.11 | |
| TIGR02782 | 299 | TrbB_P P-type conjugative transfer ATPase TrbB. Th | 95.06 | |
| KOG0701|consensus | 1606 | 95.05 | ||
| TIGR01075 | 715 | uvrD DNA helicase II. Designed to identify uvrD me | 95.05 | |
| TIGR00580 | 926 | mfd transcription-repair coupling factor (mfd). Al | 95.05 | |
| TIGR01448 | 720 | recD_rel helicase, putative, RecD/TraA family. Thi | 95.0 | |
| TIGR02768 | 744 | TraA_Ti Ti-type conjugative transfer relaxase TraA | 94.96 | |
| TIGR01074 | 664 | rep ATP-dependent DNA helicase Rep. Designed to id | 94.91 | |
| PRK13889 | 988 | conjugal transfer relaxase TraA; Provisional | 94.89 | |
| PRK11773 | 721 | uvrD DNA-dependent helicase II; Provisional | 94.86 | |
| PF10593 | 239 | Z1: Z1 domain; InterPro: IPR018310 This entry repr | 94.72 | |
| PRK10875 | 615 | recD exonuclease V subunit alpha; Provisional | 94.69 | |
| KOG1133|consensus | 821 | 94.52 | ||
| TIGR01447 | 586 | recD exodeoxyribonuclease V, alpha subunit. This f | 94.5 | |
| COG4962 | 355 | CpaF Flp pilus assembly protein, ATPase CpaF [Intr | 94.4 | |
| PHA00370 | 297 | III attachment protein | 94.36 | |
| PF05970 | 364 | PIF1: PIF1-like helicase; InterPro: IPR010285 This | 94.32 | |
| TIGR02785 | 1232 | addA_Gpos recombination helicase AddA, Firmicutes | 94.19 | |
| KOG1596|consensus | 317 | 94.07 | ||
| PRK10689 | 1147 | transcription-repair coupling factor; Provisional | 94.03 | |
| PHA00370 | 297 | III attachment protein | 94.02 | |
| COG4371 | 334 | Predicted membrane protein [Function unknown] | 94.01 | |
| PRK13851 | 344 | type IV secretion system protein VirB11; Provision | 93.91 | |
| COG0513 | 513 | SrmB Superfamily II DNA and RNA helicases [DNA rep | 93.84 | |
| COG1419 | 407 | FlhF Flagellar GTP-binding protein [Cell motility | 93.8 | |
| PF01695 | 178 | IstB_IS21: IstB-like ATP binding protein; InterPro | 93.79 | |
| PRK13900 | 332 | type IV secretion system ATPase VirB11; Provisiona | 93.78 | |
| PF02534 | 469 | T4SS-DNA_transf: Type IV secretory system Conjugat | 93.6 | |
| TIGR01073 | 726 | pcrA ATP-dependent DNA helicase PcrA. Designed to | 93.56 | |
| TIGR02524 | 358 | dot_icm_DotB Dot/Icm secretion system ATPase DotB. | 93.48 | |
| cd01130 | 186 | VirB11-like_ATPase Type IV secretory pathway compo | 93.38 | |
| PRK14722 | 374 | flhF flagellar biosynthesis regulator FlhF; Provis | 93.35 | |
| cd01126 | 384 | TraG_VirD4 The TraG/TraD/VirD4 family are bacteria | 93.21 | |
| TIGR02525 | 372 | plasmid_TraJ plasmid transfer ATPase TraJ. Members | 93.18 | |
| KOG1016|consensus | 1387 | 93.15 | ||
| PRK13897 | 606 | type IV secretion system component VirD4; Provisio | 93.12 | |
| KOG0339|consensus | 731 | 93.02 | ||
| PRK13764 | 602 | ATPase; Provisional | 92.96 | |
| PRK14701 | 1638 | reverse gyrase; Provisional | 92.88 | |
| KOG1133|consensus | 821 | 92.84 | ||
| cd00268 | 203 | DEADc DEAD-box helicases. A diverse family of prot | 92.84 | |
| KOG1132|consensus | 945 | 92.56 | ||
| KOG1131|consensus | 755 | 92.55 | ||
| PRK08181 | 269 | transposase; Validated | 92.43 | |
| COG0630 | 312 | VirB11 Type IV secretory pathway, VirB11 component | 92.31 | |
| COG2804 | 500 | PulE Type II secretory pathway, ATPase PulE/Tfp pi | 92.3 | |
| TIGR03819 | 340 | heli_sec_ATPase helicase/secretion neighborhood AT | 92.03 | |
| TIGR01420 | 343 | pilT_fam pilus retraction protein PilT. This model | 91.96 | |
| COG1200 | 677 | RecG RecG-like helicase [DNA replication, recombin | 91.8 | |
| PRK13850 | 670 | type IV secretion system protein VirD4; Provisiona | 91.78 | |
| COG1484 | 254 | DnaC DNA replication protein [DNA replication, rec | 91.74 | |
| TIGR03877 | 237 | thermo_KaiC_1 KaiC domain protein, Ph0284 family. | 91.68 | |
| PRK10436 | 462 | hypothetical protein; Provisional | 91.65 | |
| PRK12727 | 559 | flagellar biosynthesis regulator FlhF; Provisional | 91.5 | |
| KOG0338|consensus | 691 | 91.48 | ||
| PRK05973 | 237 | replicative DNA helicase; Provisional | 91.46 | |
| COG1219 | 408 | ClpX ATP-dependent protease Clp, ATPase subunit [P | 91.41 | |
| TIGR02760 | 1960 | TraI_TIGR conjugative transfer relaxase protein Tr | 91.38 | |
| PRK13826 | 1102 | Dtr system oriT relaxase; Provisional | 91.3 | |
| KOG0331|consensus | 519 | 91.16 | ||
| COG1197 | 1139 | Mfd Transcription-repair coupling factor (superfam | 90.9 | |
| COG3421 | 812 | Uncharacterized protein conserved in bacteria [Fun | 90.86 | |
| cd01129 | 264 | PulE-GspE PulE/GspE The type II secretory pathway | 90.85 | |
| TIGR00614 | 470 | recQ_fam ATP-dependent DNA helicase, RecQ family. | 90.8 | |
| PF06745 | 226 | KaiC: KaiC; InterPro: IPR014774 This entry represe | 90.73 | |
| PF02456 | 369 | Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR | 90.67 | |
| PF00437 | 270 | T2SE: Type II/IV secretion system protein; InterPr | 90.6 | |
| cd01124 | 187 | KaiC KaiC is a circadian clock protein primarily f | 90.59 | |
| PRK13876 | 663 | conjugal transfer coupling protein TraG; Provision | 90.51 | |
| PRK05707 | 328 | DNA polymerase III subunit delta'; Validated | 90.49 | |
| PRK08769 | 319 | DNA polymerase III subunit delta'; Validated | 90.44 | |
| COG5008 | 375 | PilU Tfp pilus assembly protein, ATPase PilU [Cell | 90.43 | |
| PRK10590 | 456 | ATP-dependent RNA helicase RhlE; Provisional | 90.38 | |
| PRK04537 | 572 | ATP-dependent RNA helicase RhlB; Provisional | 90.34 | |
| KOG1805|consensus | 1100 | 90.29 | ||
| PRK11889 | 436 | flhF flagellar biosynthesis regulator FlhF; Provis | 90.24 | |
| PRK13880 | 636 | conjugal transfer coupling protein TraG; Provision | 90.23 | |
| TIGR02538 | 564 | type_IV_pilB type IV-A pilus assembly ATPase PilB. | 90.18 | |
| TIGR01054 | 1171 | rgy reverse gyrase. Generally, these gyrases are e | 90.13 | |
| KOG0347|consensus | 731 | 90.12 | ||
| PRK06526 | 254 | transposase; Provisional | 90.06 | |
| PRK06835 | 329 | DNA replication protein DnaC; Validated | 90.03 | |
| PRK13822 | 641 | conjugal transfer coupling protein TraG; Provision | 89.97 | |
| PRK11776 | 460 | ATP-dependent RNA helicase DbpA; Provisional | 89.9 | |
| COG3587 | 985 | Restriction endonuclease [Defense mechanisms] | 89.82 | |
| PRK06921 | 266 | hypothetical protein; Provisional | 89.7 | |
| PF09848 | 352 | DUF2075: Uncharacterized conserved protein (DUF207 | 89.53 | |
| TIGR02767 | 623 | TraG-Ti Ti-type conjugative transfer system protie | 89.51 | |
| PRK06871 | 325 | DNA polymerase III subunit delta'; Validated | 89.42 | |
| PRK11192 | 434 | ATP-dependent RNA helicase SrmB; Provisional | 89.29 | |
| COG1875 | 436 | NYN ribonuclease and ATPase of PhoH family domains | 89.22 | |
| PF00448 | 196 | SRP54: SRP54-type protein, GTPase domain; InterPro | 89.17 | |
| PF13872 | 303 | AAA_34: P-loop containing NTP hydrolase pore-1 | 89.14 | |
| PRK05703 | 424 | flhF flagellar biosynthesis regulator FlhF; Valida | 89.08 | |
| PRK08116 | 268 | hypothetical protein; Validated | 88.91 | |
| PRK12726 | 407 | flagellar biosynthesis regulator FlhF; Provisional | 88.89 | |
| PRK08699 | 325 | DNA polymerase III subunit delta'; Validated | 88.8 | |
| PRK01297 | 475 | ATP-dependent RNA helicase RhlB; Provisional | 88.72 | |
| TIGR01389 | 591 | recQ ATP-dependent DNA helicase RecQ. The ATP-depe | 88.72 | |
| KOG1513|consensus | 1300 | 88.72 | ||
| KOG1001|consensus | 674 | 88.35 | ||
| TIGR02533 | 486 | type_II_gspE general secretory pathway protein E. | 88.12 | |
| PRK04328 | 249 | hypothetical protein; Provisional | 88.05 | |
| cd01131 | 198 | PilT Pilus retraction ATPase PilT. PilT is a nucle | 87.94 | |
| PRK14712 | 1623 | conjugal transfer nickase/helicase TraI; Provision | 87.92 | |
| PF12846 | 304 | AAA_10: AAA-like domain | 87.75 | |
| PRK08727 | 233 | hypothetical protein; Validated | 87.65 | |
| TIGR02788 | 308 | VirB11 P-type DNA transfer ATPase VirB11. The VirB | 87.63 | |
| PRK12678 | 672 | transcription termination factor Rho; Provisional | 87.16 | |
| PF00270 | 169 | DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 | 87.14 | |
| PRK09183 | 259 | transposase/IS protein; Provisional | 87.08 | |
| PRK04837 | 423 | ATP-dependent RNA helicase RhlB; Provisional | 86.99 | |
| PRK12377 | 248 | putative replication protein; Provisional | 86.9 | |
| TIGR02640 | 262 | gas_vesic_GvpN gas vesicle protein GvpN. Members o | 86.35 | |
| TIGR03754 | 643 | conj_TOL_TraD conjugative coupling factor TraD, TO | 86.19 | |
| TIGR03743 | 634 | SXT_TraD conjugative coupling factor TraD, SXT/TOL | 86.16 | |
| PRK08533 | 230 | flagellar accessory protein FlaH; Reviewed | 86.05 | |
| PRK07952 | 244 | DNA replication protein DnaC; Validated | 85.92 | |
| TIGR03881 | 229 | KaiC_arch_4 KaiC domain protein, PAE1156 family. M | 85.89 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 85.8 | |
| TIGR03878 | 259 | thermo_KaiC_2 KaiC domain protein, AF_0795 family. | 85.72 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 85.68 | |
| PHA02244 | 383 | ATPase-like protein | 85.46 | |
| PRK09401 | 1176 | reverse gyrase; Reviewed | 85.43 | |
| COG0553 | 866 | HepA Superfamily II DNA/RNA helicases, SNF2 family | 85.39 | |
| PHA02533 | 534 | 17 large terminase protein; Provisional | 85.34 | |
| cd01127 | 410 | TrwB Bacterial conjugation protein TrwB, ATP bindi | 85.25 | |
| PF10412 | 386 | TrwB_AAD_bind: Type IV secretion-system coupling p | 85.09 | |
| TIGR02760 | 1960 | TraI_TIGR conjugative transfer relaxase protein Tr | 85.05 | |
| PRK12723 | 388 | flagellar biosynthesis regulator FlhF; Provisional | 84.7 | |
| COG0593 | 408 | DnaA ATPase involved in DNA replication initiation | 84.1 | |
| PRK13709 | 1747 | conjugal transfer nickase/helicase TraI; Provision | 84.06 | |
| PRK11057 | 607 | ATP-dependent DNA helicase RecQ; Provisional | 83.95 | |
| PRK06964 | 342 | DNA polymerase III subunit delta'; Validated | 83.77 | |
| cd01122 | 271 | GP4d_helicase GP4d_helicase is a homohexameric 5'- | 83.74 | |
| PF04665 | 241 | Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 | 83.65 | |
| PTZ00110 | 545 | helicase; Provisional | 83.63 | |
| PRK14723 | 767 | flhF flagellar biosynthesis regulator FlhF; Provis | 83.62 | |
| PRK07993 | 334 | DNA polymerase III subunit delta'; Validated | 83.6 | |
| KOG0745|consensus | 564 | 83.59 | ||
| PF13555 | 62 | AAA_29: P-loop containing region of AAA domain | 83.59 | |
| PRK06090 | 319 | DNA polymerase III subunit delta'; Validated | 83.33 | |
| TIGR03499 | 282 | FlhF flagellar biosynthetic protein FlhF. | 83.17 | |
| COG0210 | 655 | UvrD Superfamily I DNA and RNA helicases [DNA repl | 83.13 | |
| cd00032 | 243 | CASc Caspase, interleukin-1 beta converting enzyme | 82.9 | |
| PF12775 | 272 | AAA_7: P-loop containing dynein motor region D3; P | 82.87 | |
| PRK05642 | 234 | DNA replication initiation factor; Validated | 82.65 | |
| KOG1806|consensus | 1320 | 82.59 | ||
| COG1074 | 1139 | RecB ATP-dependent exoDNAse (exonuclease V) beta s | 82.44 | |
| TIGR02655 | 484 | circ_KaiC circadian clock protein KaiC. Members of | 82.26 | |
| PF05729 | 166 | NACHT: NACHT domain | 82.23 | |
| COG3972 | 660 | Superfamily I DNA and RNA helicases [General funct | 82.15 | |
| TIGR03817 | 742 | DECH_helic helicase/secretion neighborhood putativ | 82.08 | |
| PF01078 | 206 | Mg_chelatase: Magnesium chelatase, subunit ChlI; I | 82.04 | |
| PRK14721 | 420 | flhF flagellar biosynthesis regulator FlhF; Provis | 81.91 | |
| COG0467 | 260 | RAD55 RecA-superfamily ATPases implicated in signa | 81.6 | |
| TIGR02655 | 484 | circ_KaiC circadian clock protein KaiC. Members of | 81.55 | |
| PRK14974 | 336 | cell division protein FtsY; Provisional | 81.47 | |
| PLN03137 | 1195 | ATP-dependent DNA helicase; Q4-like; Provisional | 81.43 | |
| PRK13766 | 773 | Hef nuclease; Provisional | 81.31 | |
| PRK14086 | 617 | dnaA chromosomal replication initiation protein; P | 81.06 | |
| COG4185 | 187 | Uncharacterized protein conserved in bacteria [Fun | 80.18 |
| >KOG0331|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-74 Score=554.75 Aligned_cols=372 Identities=61% Similarity=1.011 Sum_probs=343.7
Q ss_pred CCCccccCCCCCCcccCCCCHHHHHHHHHHcCCeeccc--CCCccccccc-----------------------------c
Q psy9620 70 NLPPFEKNFFHPSPSVLNRSPHEVQAFRDKHQMTLKGN--APNPITEFAE-----------------------------A 118 (453)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~p~p~~~f~~-----------------------------~ 118 (453)
.++++.+++|.+++........+...++..+++++.+. .|.|+.+|++ +
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~v~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 96 (519)
T KOG0331|consen 17 DLSPFDKNFYKEHPSVKKRGSAEVERKRKKNEITVKGGDSVPKPVKSFEESGFPAKVLEEIPKLSRSSGESDSSAAFQEL 96 (519)
T ss_pred ccCcccccccccccccccccccccccccCcceeeccCCCCCCCCccchhcccCCccccccccccccccccCCcchhhhcc
Confidence 67899999999998888888888888888888877664 5766655544 4
Q ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhh-cCCCCCCCCcEEEEEcCCHH
Q psy9620 119 NFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINH-QSQLKPGDGPIVLVLAPTRE 197 (453)
Q Consensus 119 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~-~~~~~~~~~~~vlil~Ptr~ 197 (453)
++++.+...++..||..|||||+++||.+++|+|++.+|.||||||++|++|++.++.. ......+.+|++|||+||||
T Consensus 97 ~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTRE 176 (519)
T KOG0331|consen 97 GLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTRE 176 (519)
T ss_pred cccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcHH
Confidence 45666777778999999999999999999999999999999999999999999999998 56666778999999999999
Q ss_pred HHHHHHHHHHHhcCCCCceEEEEeCCccCCCC------------------------------------------------
Q psy9620 198 LAQQIQEVARDFGSSTYLRSTCVYGGASKGPQ------------------------------------------------ 229 (453)
Q Consensus 198 La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~------------------------------------------------ 229 (453)
||.|+.+.+.+++....+++.|+|||.+...|
T Consensus 177 LA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADrMldmGF 256 (519)
T KOG0331|consen 177 LAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADRMLDMGF 256 (519)
T ss_pred HHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHHhhhcccc
Confidence 99999999999999999999999999998877
Q ss_pred -------------CCceEEEEeccCcHHHHHHHHHhhccceEEEeccc-ccccCccceeEEEEccccchhhhHHHHHHhh
Q psy9620 230 -------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSL-TLSANHNIQQVVEVCAEHEKENKLFGLLNDI 295 (453)
Q Consensus 230 -------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~ 295 (453)
+++|++|+|||||.+++.++..|+.+++.+.+... .+.+.+++.|++..+....|..+|..+|..+
T Consensus 257 e~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~~K~~~l~~lL~~~ 336 (519)
T KOG0331|consen 257 EPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDETAKLRKLGKLLEDI 336 (519)
T ss_pred HHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCHHHHHHHHHHHHHHH
Confidence 56699999999999999999999999999999876 7788999999999999999999999999998
Q ss_pred hcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEEEc
Q psy9620 296 SSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVINF 375 (453)
Q Consensus 296 ~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~ 375 (453)
....++|+||||+|++.|++|+..|...++++..|||+++|.+|+.+++.|++|+..||||||+++||||||+|++||||
T Consensus 337 ~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV~lVIny 416 (519)
T KOG0331|consen 337 SSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDVDLVINY 416 (519)
T ss_pred hccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCccccEEEeC
Confidence 76677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChhHHHHhhhcccCCCCcceEEEEEcCCChHHHHHHHHHHHhcCCCCChHHHHHHhhcCCCC
Q psy9620 376 DYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDLIDVLTESNHPVDPKLSALASRSGGSG 441 (453)
Q Consensus 376 d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~v~~~l~~~~~~~~~~~ 441 (453)
|+|.++++|+||+|||||+|+.|.+++||+..+...+..++++++++++.|++.|..++...+..+
T Consensus 417 dfP~~vEdYVHRiGRTGRa~~~G~A~tfft~~~~~~a~~l~~~l~e~~q~v~~~l~~~~~~~~~~~ 482 (519)
T KOG0331|consen 417 DFPNNVEDYVHRIGRTGRAGKKGTAITFFTSDNAKLARELIKVLREAGQTVPPDLLEYARVSGSGG 482 (519)
T ss_pred CCCCCHHHHHhhcCccccCCCCceEEEEEeHHHHHHHHHHHHHHHHccCCCChHHHHHHhhcccCC
Confidence 999999999999999999999999999999999999999999999999999999999988765444
|
|
| >PTZ00110 helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-72 Score=568.18 Aligned_cols=381 Identities=56% Similarity=0.953 Sum_probs=348.6
Q ss_pred CCCCCCcccccCC--CCCccccCCCCCCcccCCCCHHHHHHHHHHcCCee-ccc-CCCccccccccCCCHHHHHHHHHCC
Q psy9620 57 STMGGALRAIDWG--NLPPFEKNFFHPSPSVLNRSPHEVQAFRDKHQMTL-KGN-APNPITEFAEANFPDYVLKEVKRQG 132 (453)
Q Consensus 57 ~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~p~p~~~f~~~~l~~~l~~~l~~~g 132 (453)
...+..+..++|+ +++||+++||.+++.+..++.+++..++....+.+ .+. +|.|+.+|++++|++++++.|+++|
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~p~p~~~f~~~~l~~~l~~~l~~~g 149 (545)
T PTZ00110 70 STLGKRLQPIDWKSINLVPFEKNFYKEHPEVSALSSKEVDEIRKEKEITIIAGENVPKPVVSFEYTSFPDYILKSLKNAG 149 (545)
T ss_pred cccccccCCCCCccccccchhhhcccCChhhhcCCHHHHHHHHHhcCcEEecCCCCCcccCCHhhcCCCHHHHHHHHHCC
Confidence 4446678889997 88999999999999999999999999999998886 566 8999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhcCC
Q psy9620 133 FDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGSS 212 (453)
Q Consensus 133 ~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~~~ 212 (453)
|.+|||+|.++||.+++|+|+|++||||||||++|++|++.++...+......+|.+|||+||+|||.|+.+.+.+++..
T Consensus 150 ~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi~~~~~~~~~~ 229 (545)
T PTZ00110 150 FTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQIREQCNKFGAS 229 (545)
T ss_pred CCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999987765555567899999999999999999999999988
Q ss_pred CCceEEEEeCCccCCCC------------------------------------------------------------CCc
Q psy9620 213 TYLRSTCVYGGASKGPQ------------------------------------------------------------PDR 232 (453)
Q Consensus 213 ~~~~~~~~~gg~~~~~~------------------------------------------------------------~~~ 232 (453)
..+++.+++|+.....+ +++
T Consensus 230 ~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd~mld~gf~~~i~~il~~~~~~~ 309 (545)
T PTZ00110 230 SKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDR 309 (545)
T ss_pred cCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEEeehHHhhhhcchHHHHHHHHHhCCCCC
Confidence 89999999998754321 678
Q ss_pred eEEEEeccCcHHHHHHHHHhhc-cceEEEecccccccCccceeEEEEccccchhhhHHHHHHhhhcCCCCcEEEEEcchh
Q psy9620 233 QVLMWSATWPREVQKLAEDFLD-SYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKR 311 (453)
Q Consensus 233 q~v~~SAT~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~ 311 (453)
|+++||||||.+++.+++.++. +++.+.+..........+.+.+..+...+|...|..++..+.. ...++||||++++
T Consensus 310 q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~-~~~k~LIF~~t~~ 388 (545)
T PTZ00110 310 QTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEEHEKRGKLKMLLQRIMR-DGDKILIFVETKK 388 (545)
T ss_pred eEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEechhHHHHHHHHHHHhcc-cCCeEEEEecChH
Confidence 9999999999999999999886 5777777766666667888888888888888888888887643 4679999999999
Q ss_pred HHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEEEcCCCCChhHHHHhhhcc
Q psy9620 312 KVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRT 391 (453)
Q Consensus 312 ~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRa 391 (453)
.|+.++..|...++.+..+||+|++.+|++++++|++|+++|||||+++++|||+|+|++||+||+|.++++|+||+||+
T Consensus 389 ~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRt 468 (545)
T PTZ00110 389 GADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRT 468 (545)
T ss_pred HHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCEEEEeCCCCCHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcceEEEEEcCCChHHHHHHHHHHHhcCCCCChHHHHHHhhcC
Q psy9620 392 GRSDNTGTSYTFFTQQNSRQAKDLIDVLTESNHPVDPKLSALASRSG 438 (453)
Q Consensus 392 gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~v~~~l~~~~~~~~ 438 (453)
||+|..|.|++|+++++...+++|+++|++.+++||++|.+|+....
T Consensus 469 GR~G~~G~ai~~~~~~~~~~~~~l~~~l~~~~q~vp~~l~~~~~~~~ 515 (545)
T PTZ00110 469 GRAGAKGASYTFLTPDKYRLARDLVKVLREAKQPVPPELEKLSNERS 515 (545)
T ss_pred ccCCCCceEEEEECcchHHHHHHHHHHHHHccCCCCHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999997654
|
|
| >KOG0336|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-70 Score=497.09 Aligned_cols=367 Identities=41% Similarity=0.755 Sum_probs=338.0
Q ss_pred cCCCCCccccCCCCCCcccCCCCHHHHHHHHHHc-CCeec----cc---CCCcccccccc-CCCHHHHHHHHHCCCCCCC
Q psy9620 67 DWGNLPPFEKNFFHPSPSVLNRSPHEVQAFRDKH-QMTLK----GN---APNPITEFAEA-NFPDYVLKEVKRQGFDRPT 137 (453)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~~---~p~p~~~f~~~-~l~~~l~~~l~~~g~~~~~ 137 (453)
.|.++||..++||.+.++..+++++++.+|+.+. .|+.. +. +|+|.-+|+++ .-.+.+++++++.||.+||
T Consensus 165 kW~~lpPi~knfYke~~e~s~ls~~q~~~~r~en~~it~dd~K~gekrpIPnP~ctFddAFq~~pevmenIkK~GFqKPt 244 (629)
T KOG0336|consen 165 KWAKLPPIKKNFYKESNETSNLSKEQLQEWRKENFNITCDDLKEGEKRPIPNPVCTFDDAFQCYPEVMENIKKTGFQKPT 244 (629)
T ss_pred ccccCCchhhhhhhcCchhccCCHHHHHHHHHcCCcEEecccccCCcccCCCCcCcHHHHHhhhHHHHHHHHhccCCCCC
Confidence 4668999999999999999999999999999876 34432 22 89999999886 6789999999999999999
Q ss_pred HHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCC-CCCCcEEEEEcCCHHHHHHHHHHHHHhcCCCCce
Q psy9620 138 PIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLK-PGDGPIVLVLAPTRELAQQIQEVARDFGSSTYLR 216 (453)
Q Consensus 138 ~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~-~~~~~~vlil~Ptr~La~q~~~~~~~~~~~~~~~ 216 (453)
|+|++|||++|+|+|++.+|+||+|||++|++|.+.++..++... ...+|.+|+++|||||+.|+.-++.++. ..+++
T Consensus 245 PIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e~~kys-yng~k 323 (629)
T KOG0336|consen 245 PIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEVKKYS-YNGLK 323 (629)
T ss_pred cchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHHHhHHhHhh-hcCcc
Confidence 999999999999999999999999999999999999887765432 3468999999999999999999888874 46789
Q ss_pred EEEEeCCccCCCC------------------------------------------------------------CCceEEE
Q psy9620 217 STCVYGGASKGPQ------------------------------------------------------------PDRQVLM 236 (453)
Q Consensus 217 ~~~~~gg~~~~~~------------------------------------------------------------~~~q~v~ 236 (453)
.+|++|+.+...+ +++|++|
T Consensus 324 svc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~i~l~siTYlVlDEADrMLDMgFEpqIrkilldiRPDRqtvm 403 (629)
T KOG0336|consen 324 SVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVINLASITYLVLDEADRMLDMGFEPQIRKILLDIRPDRQTVM 403 (629)
T ss_pred eEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEEecchhhhhcccccHHHHHHhhhcCCcceeee
Confidence 9999999887765 8999999
Q ss_pred EeccCcHHHHHHHHHhhccceEEEecccccccCccceeEEEEccccchhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHH
Q psy9620 237 WSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKI 316 (453)
Q Consensus 237 ~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l 316 (453)
.|||||+.+++++..|+++++.+.++.+.+.....++|.+.+..+.+|...+..++.... ...++||||..+..|+.|
T Consensus 404 TSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i~v~~d~~k~~~~~~f~~~ms--~ndKvIiFv~~K~~AD~L 481 (629)
T KOG0336|consen 404 TSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNIIVTTDSEKLEIVQFFVANMS--SNDKVIIFVSRKVMADHL 481 (629)
T ss_pred ecccCchHHHHHHHHhhhCceEEEecccceeeeeeeeeeEEecccHHHHHHHHHHHHhcC--CCceEEEEEechhhhhhc
Confidence 999999999999999999999999999999999999999988888888877777776653 356999999999999999
Q ss_pred HHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEEEcCCCCChhHHHHhhhcccCCCC
Q psy9620 317 TKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDN 396 (453)
Q Consensus 317 ~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~ 396 (453)
...|...++.+..+||+.++.+|+.+++.|++|+++||||||+++||||+++|+||+|||+|.++++|+||+||+||+|.
T Consensus 482 SSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr 561 (629)
T KOG0336|consen 482 SSDFCLKGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAGR 561 (629)
T ss_pred cchhhhcccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcceeeccCCCccHHHHHHHhcccccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEEEcCCChHHHHHHHHHHHhcCCCCChHHHHHHhh
Q psy9620 397 TGTSYTFFTQQNSRQAKDLIDVLTESNHPVDPKLSALASR 436 (453)
Q Consensus 397 ~g~~~~~~~~~~~~~~~~l~~~l~~~~~~v~~~l~~~~~~ 436 (453)
.|.+++|++.+|...+.+|+++|++++|+||++|..||++
T Consensus 562 ~G~sis~lt~~D~~~a~eLI~ILe~aeQevPdeL~~mAer 601 (629)
T KOG0336|consen 562 TGTSISFLTRNDWSMAEELIQILERAEQEVPDELVRMAER 601 (629)
T ss_pred CcceEEEEehhhHHHHHHHHHHHHHhhhhCcHHHHHHHHH
Confidence 9999999999999999999999999999999999999975
|
|
| >KOG0333|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-63 Score=468.37 Aligned_cols=346 Identities=38% Similarity=0.653 Sum_probs=316.1
Q ss_pred CCHHHHHHHHHHcCCeeccc-CCCccccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhh
Q psy9620 88 RSPHEVQAFRDKHQMTLKGN-APNPITEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLA 166 (453)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~-~p~p~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~ 166 (453)
++..+..-|++.+.|.++|. +|.|+.+|++.+||..+++.+.+.||..|+|+|.++||..++.+|+|.+|.||||||++
T Consensus 219 m~~rdwri~redynis~kg~~lpnplrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~rD~igvaETgsGktaa 298 (673)
T KOG0333|consen 219 MTERDWRIFREDYNISIKGGRLPNPLRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAA 298 (673)
T ss_pred cCCccceeeecceeeeecCCCCCccccChhhcCCCHHHHHHHHhcCCCCCchHHHhhccchhccCCeeeEEeccCCcccc
Confidence 33444555566778888887 99999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhhhcCCCCC----CCCcEEEEEcCCHHHHHHHHHHHHHhcCCCCceEEEEeCCccCCCC-------------
Q psy9620 167 YMLPAIVHINHQSQLKP----GDGPIVLVLAPTRELAQQIQEVARDFGSSTYLRSTCVYGGASKGPQ------------- 229 (453)
Q Consensus 167 ~~l~~l~~~~~~~~~~~----~~~~~vlil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~------------- 229 (453)
|++|++..+...++... ..+|.++||+|||+|++|+.++-.+|++..+++++.+.||.+...+
T Consensus 299 f~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~gceivia 378 (673)
T KOG0333|consen 299 FLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSMGCEIVIA 378 (673)
T ss_pred chhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhhhhccceeeec
Confidence 99999999988775433 4689999999999999999999999999999999999999887665
Q ss_pred ------------------------------------------------------------------------CCceEEEE
Q psy9620 230 ------------------------------------------------------------------------PDRQVLMW 237 (453)
Q Consensus 230 ------------------------------------------------------------------------~~~q~v~~ 237 (453)
.-+|++||
T Consensus 379 tPgrLid~Lenr~lvl~qctyvvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mf 458 (673)
T KOG0333|consen 379 TPGRLIDSLENRYLVLNQCTYVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMF 458 (673)
T ss_pred CchHHHHHHHHHHHHhccCceEeccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEE
Confidence 23899999
Q ss_pred eccCcHHHHHHHHHhhccceEEEecccccccCccceeEEEEccccchhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHH
Q psy9620 238 SATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKIT 317 (453)
Q Consensus 238 SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~ 317 (453)
|||+|+.++.+++.|+.+|+.+.++... ....-++|.+.++.+.+|..+|.++|... ...++|||+|+++.|+.|+
T Consensus 459 tatm~p~verlar~ylr~pv~vtig~~g-k~~~rveQ~v~m~~ed~k~kkL~eil~~~---~~ppiIIFvN~kk~~d~lA 534 (673)
T KOG0333|consen 459 TATMPPAVERLARSYLRRPVVVTIGSAG-KPTPRVEQKVEMVSEDEKRKKLIEILESN---FDPPIIIFVNTKKGADALA 534 (673)
T ss_pred ecCCChHHHHHHHHHhhCCeEEEeccCC-CCccchheEEEEecchHHHHHHHHHHHhC---CCCCEEEEEechhhHHHHH
Confidence 9999999999999999999999999887 45567889999999989999999988764 4679999999999999999
Q ss_pred HHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEEEcCCCCChhHHHHhhhcccCCCCc
Q psy9620 318 KSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNT 397 (453)
Q Consensus 318 ~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~ 397 (453)
+.|.+.++.+..+||+.++++|+.++..|++|..+||||||+++||||||+|.+|||||+++++++|+|||||+||+|+.
T Consensus 535 k~LeK~g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~ 614 (673)
T KOG0333|consen 535 KILEKAGYKVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKS 614 (673)
T ss_pred HHHhhccceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeeecchhhhHHHHHHHhccccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEcCCChHHHHHHHHHHH-hcCCCCChHHHHHHhhc
Q psy9620 398 GTSYTFFTQQNSRQAKDLIDVLT-ESNHPVDPKLSALASRS 437 (453)
Q Consensus 398 g~~~~~~~~~~~~~~~~l~~~l~-~~~~~v~~~l~~~~~~~ 437 (453)
|.+++|+++.|...+.+|...|. .....+|++|.....+.
T Consensus 615 GtaiSflt~~dt~v~ydLkq~l~es~~s~~P~Ela~h~~a~ 655 (673)
T KOG0333|consen 615 GTAISFLTPADTAVFYDLKQALRESVKSHCPPELANHPDAQ 655 (673)
T ss_pred ceeEEEeccchhHHHHHHHHHHHHhhhccCChhhccChhhc
Confidence 99999999999999999998766 56778898887776554
|
|
| >KOG0339|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-63 Score=461.46 Aligned_cols=372 Identities=40% Similarity=0.693 Sum_probs=346.0
Q ss_pred CcccccCC--CCCccccCCCCCCcccCCCCHHHHHHHHHHcCCeeccc-CCCccccccccCCCHHHHHHHHHCCCCCCCH
Q psy9620 62 ALRAIDWG--NLPPFEKNFFHPSPSVLNRSPHEVQAFRDKHQMTLKGN-APNPITEFAEANFPDYVLKEVKRQGFDRPTP 138 (453)
Q Consensus 62 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~p~~~f~~~~l~~~l~~~l~~~g~~~~~~ 138 (453)
.+..+++. +++||.++||.++.++..++..+...++....+.+.+. .|.|+.+|++.++++.|+.++.+..|.+|||
T Consensus 169 pl~~idhs~i~y~p~~kdfy~e~esI~gl~~~d~~~~r~~Lnlrv~g~s~~rpvtsfeh~gfDkqLm~airk~Ey~kptp 248 (731)
T KOG0339|consen 169 PLPPIDHSEIDYEPFNKDFYEEHESIEGLTKMDVIDLRLTLNLRVSGSSPPRPVTSFEHFGFDKQLMTAIRKSEYEKPTP 248 (731)
T ss_pred CCCCcchhhccccccccccccChhhhhccccccchhhHhhhcceeccCCCCCCcchhhhcCchHHHHHHHhhhhcccCCc
Confidence 45555555 78999999999999999999999999999999999988 8999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhcCCCCceEE
Q psy9620 139 IQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGSSTYLRST 218 (453)
Q Consensus 139 ~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~~~~~~~~~ 218 (453)
+|.+++|..++|+|++.+|.||||||.+|+.|++.+++.++.+.++.+|..||+|||||||.|++.++++|++..+++++
T Consensus 249 iq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v 328 (731)
T KOG0339|consen 249 IQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRELASQIFSEAKKFGKAYGLRVV 328 (731)
T ss_pred ccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHHHHHHHHHHHHHhhhhccceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCccCCCC------------------------------------------------------------CCceEEEEe
Q psy9620 219 CVYGGASKGPQ------------------------------------------------------------PDRQVLMWS 238 (453)
Q Consensus 219 ~~~gg~~~~~~------------------------------------------------------------~~~q~v~~S 238 (453)
++|||.++..| +++|+|+||
T Consensus 329 ~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEadrmfdmGfe~qVrSI~~hirpdrQtllFs 408 (731)
T KOG0339|consen 329 AVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEADRMFDMGFEPQVRSIKQHIRPDRQTLLFS 408 (731)
T ss_pred EeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhhcccceeeeEEEEechhhhhccccHHHHHHHHhhcCCcceEEEee
Confidence 99999998876 899999999
Q ss_pred ccCcHHHHHHHHHhhccceEEEecccccccCccceeEEEEccccchhhhHHHHHHhhhc-CCCCcEEEEEcchhHHHHHH
Q psy9620 239 ATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISS-KDENKTIIFAETKRKVDKIT 317 (453)
Q Consensus 239 AT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~-~~~~~~lVF~~s~~~~~~l~ 317 (453)
||++..++.+++.++.+++.+...... ..+..|.|.+.++...++ +|-++++++.. ...+++|||+..+..++.++
T Consensus 409 aTf~~kIe~lard~L~dpVrvVqg~vg-ean~dITQ~V~V~~s~~~--Kl~wl~~~L~~f~S~gkvlifVTKk~~~e~i~ 485 (731)
T KOG0339|consen 409 ATFKKKIEKLARDILSDPVRVVQGEVG-EANEDITQTVSVCPSEEK--KLNWLLRHLVEFSSEGKVLIFVTKKADAEEIA 485 (731)
T ss_pred ccchHHHHHHHHHHhcCCeeEEEeehh-ccccchhheeeeccCcHH--HHHHHHHHhhhhccCCcEEEEEeccCCHHHHH
Confidence 999999999999999999988877665 567889999999876433 33444444322 23579999999999999999
Q ss_pred HHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEEEcCCCCChhHHHHhhhcccCCCCc
Q psy9620 318 KSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNT 397 (453)
Q Consensus 318 ~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~ 397 (453)
..|...++++..+|++|.+.+|.+++.+|+.+++.||||||++++|+||+++..||+||+-.+++.|.||+||+||+|..
T Consensus 486 a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVvnyD~ardIdththrigrtgRag~k 565 (731)
T KOG0339|consen 486 ANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEK 565 (731)
T ss_pred HHhccccceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccceeecccccchhHHHHHHhhhccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEcCCChHHHHHHHHHHHhcCCCCChHHHHHHhh
Q psy9620 398 GTSYTFFTQQNSRQAKDLIDVLTESNHPVDPKLSALASR 436 (453)
Q Consensus 398 g~~~~~~~~~~~~~~~~l~~~l~~~~~~v~~~l~~~~~~ 436 (453)
|.+|+++++.|.+++-.|++.|+.++|.||+.|.+|+..
T Consensus 566 GvayTlvTeKDa~fAG~LVnnLe~agQnVP~~l~dlamk 604 (731)
T KOG0339|consen 566 GVAYTLVTEKDAEFAGHLVNNLEGAGQNVPDELMDLAMK 604 (731)
T ss_pred ceeeEEechhhHHHhhHHHHHHhhccccCChHHHHHHhh
Confidence 999999999999999999999999999999999999843
|
|
| >PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-61 Score=491.14 Aligned_cols=372 Identities=31% Similarity=0.522 Sum_probs=329.7
Q ss_pred CcccccCCCCCccccCCCCCCcccCC-CCHHHHHHHHHHcCCeeccc-CCCccccccccCCCHHHHHHHHHCCCCCCCHH
Q psy9620 62 ALRAIDWGNLPPFEKNFFHPSPSVLN-RSPHEVQAFRDKHQMTLKGN-APNPITEFAEANFPDYVLKEVKRQGFDRPTPI 139 (453)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~p~p~~~f~~~~l~~~l~~~l~~~g~~~~~~~ 139 (453)
.+....|+.+++++++||...++... ++.+++..++....+.+.|. .|.|+.+|++++|++.+++.|.+.||..|||+
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~~~g~~~p~pi~~f~~~~l~~~l~~~L~~~g~~~ptpi 147 (518)
T PLN00206 68 AVGAPKPKRLPATDECFYVRDPGSTSGLSSSQAELLRRKLEIHVKGEAVPPPILSFSSCGLPPKLLLNLETAGYEFPTPI 147 (518)
T ss_pred CcCCCchhhcCCcCCcCCccCcchhccCCHHHHHHHHHHCCCEecCCCCCchhcCHHhCCCCHHHHHHHHHcCCCCCCHH
Confidence 34445566889999999998887754 88999999999999999888 99999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCC--CCCCCCcEEEEEcCCHHHHHHHHHHHHHhcCCCCceE
Q psy9620 140 QAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQ--LKPGDGPIVLVLAPTRELAQQIQEVARDFGSSTYLRS 217 (453)
Q Consensus 140 Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~--~~~~~~~~vlil~Ptr~La~q~~~~~~~~~~~~~~~~ 217 (453)
|.++||.+++|+|++++||||||||++|++|++.++..... .....++++|||+||+|||.|+.+.++.+....++++
T Consensus 148 Q~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~ 227 (518)
T PLN00206 148 QMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQAKVLGKGLPFKT 227 (518)
T ss_pred HHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCceE
Confidence 99999999999999999999999999999999988764321 1223678999999999999999999999998888898
Q ss_pred EEEeCCccCCCC-----------------------------------------------------------CCceEEEEe
Q psy9620 218 TCVYGGASKGPQ-----------------------------------------------------------PDRQVLMWS 238 (453)
Q Consensus 218 ~~~~gg~~~~~~-----------------------------------------------------------~~~q~v~~S 238 (453)
.+++||.....+ +..|++++|
T Consensus 228 ~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lViDEad~ml~~gf~~~i~~i~~~l~~~q~l~~S 307 (518)
T PLN00206 228 ALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHDIELDNVSVLVLDEVDCMLERGFRDQVMQIFQALSQPQVLLFS 307 (518)
T ss_pred EEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcCCccchheeEEEeecHHHHhhcchHHHHHHHHHhCCCCcEEEEE
Confidence 888888653321 567999999
Q ss_pred ccCcHHHHHHHHHhhccceEEEecccccccCccceeEEEEccccchhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHH
Q psy9620 239 ATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITK 318 (453)
Q Consensus 239 AT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~ 318 (453)
||++.+++.++..++.+++.+.+.... .....+.+.+..+....+...+.+++..... ...++||||+++..|+.+++
T Consensus 308 ATl~~~v~~l~~~~~~~~~~i~~~~~~-~~~~~v~q~~~~~~~~~k~~~l~~~l~~~~~-~~~~~iVFv~s~~~a~~l~~ 385 (518)
T PLN00206 308 ATVSPEVEKFASSLAKDIILISIGNPN-RPNKAVKQLAIWVETKQKKQKLFDILKSKQH-FKPPAVVFVSSRLGADLLAN 385 (518)
T ss_pred eeCCHHHHHHHHHhCCCCEEEEeCCCC-CCCcceeEEEEeccchhHHHHHHHHHHhhcc-cCCCEEEEcCCchhHHHHHH
Confidence 999999999999999998888776544 3445677777777777777778887765422 24589999999999999999
Q ss_pred HHHh-cCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEEEcCCCCChhHHHHhhhcccCCCCc
Q psy9620 319 SIQN-YGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNT 397 (453)
Q Consensus 319 ~L~~-~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~ 397 (453)
.|.. .++.+..+||+|++.+|..+++.|++|+.+|||||+++++|||+|+|++||+||+|.++++|+||+|||||.|..
T Consensus 386 ~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~ 465 (518)
T PLN00206 386 AITVVTGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEK 465 (518)
T ss_pred HHhhccCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCCEEEEeCCCCCHHHHHHhccccccCCCC
Confidence 9975 589999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEcCCChHHHHHHHHHHHhcCCCCChHHHHHHh
Q psy9620 398 GTSYTFFTQQNSRQAKDLIDVLTESNHPVDPKLSALAS 435 (453)
Q Consensus 398 g~~~~~~~~~~~~~~~~l~~~l~~~~~~v~~~l~~~~~ 435 (453)
|.+++|+++++...+.++++.|+..++.+|++|.++..
T Consensus 466 G~ai~f~~~~~~~~~~~l~~~l~~~~~~vp~~l~~~~~ 503 (518)
T PLN00206 466 GTAIVFVNEEDRNLFPELVALLKSSGAAIPRELANSRY 503 (518)
T ss_pred eEEEEEEchhHHHHHHHHHHHHHHcCCCCCHHHHhChh
Confidence 99999999999999999999999999999999998763
|
|
| >KOG0330|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-61 Score=437.63 Aligned_cols=311 Identities=34% Similarity=0.550 Sum_probs=287.0
Q ss_pred CCccccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcE
Q psy9620 109 PNPITEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPI 188 (453)
Q Consensus 109 p~p~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~ 188 (453)
-....+|.++++.+.+++++++.+|..||++|+++||.++.|+|+|+.|+||||||.+|++|++++++++++ .+.
T Consensus 57 ~e~~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~-----~~~ 131 (476)
T KOG0330|consen 57 DESFKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEPK-----LFF 131 (476)
T ss_pred hhhhcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCCC-----Cce
Confidence 345678999999999999999999999999999999999999999999999999999999999999998654 589
Q ss_pred EEEEcCCHHHHHHHHHHHHHhcCCCCceEEEEeCCccCCCC---------------------------------------
Q psy9620 189 VLVLAPTRELAQQIQEVARDFGSSTYLRSTCVYGGASKGPQ--------------------------------------- 229 (453)
Q Consensus 189 vlil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~--------------------------------------- 229 (453)
+|||+||||||.||.+.+..++...++++.++.||.+...+
T Consensus 132 ~lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlD 211 (476)
T KOG0330|consen 132 ALVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLD 211 (476)
T ss_pred EEEecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhc
Confidence 99999999999999999999999999999999999875433
Q ss_pred ----------------------CCceEEEEeccCcHHHHHHHHHhhccceEEEecccccccCccceeEEEEccccchhhh
Q psy9620 230 ----------------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENK 287 (453)
Q Consensus 230 ----------------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~ 287 (453)
..+|+++||||++..+.++....+++++.+.+.... .....++|.+.+++...|...
T Consensus 212 EADrlLd~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky-~tv~~lkQ~ylfv~~k~K~~y 290 (476)
T KOG0330|consen 212 EADRLLDMDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSKY-QTVDHLKQTYLFVPGKDKDTY 290 (476)
T ss_pred hHHhhhhhhhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhccCCCeEEeccchh-cchHHhhhheEeccccccchh
Confidence 689999999999999999999999999988776654 445678888889999999999
Q ss_pred HHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCC
Q psy9620 288 LFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVD 367 (453)
Q Consensus 288 l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip 367 (453)
|++++++. ....+||||++...++.++-.|...++.+..+||.|++..|.-.++.|++|.++||||||+++||+|||
T Consensus 291 LV~ll~e~---~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip 367 (476)
T KOG0330|consen 291 LVYLLNEL---AGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIP 367 (476)
T ss_pred HHHHHHhh---cCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCC
Confidence 99999975 357999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcCCChHHHHHHHHHHHhcCCC--CCh
Q psy9620 368 DVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDLIDVLTESNHP--VDP 428 (453)
Q Consensus 368 ~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~--v~~ 428 (453)
.|++|||||+|.+..+|+||+||++|+|..|.++.|++.-|.+.+.++...+...... ++.
T Consensus 368 ~Vd~VVNyDiP~~skDYIHRvGRtaRaGrsG~~ItlVtqyDve~~qrIE~~~gkkl~~~~~~~ 430 (476)
T KOG0330|consen 368 HVDVVVNYDIPTHSKDYIHRVGRTARAGRSGKAITLVTQYDVELVQRIEHALGKKLPEYKVDK 430 (476)
T ss_pred CceEEEecCCCCcHHHHHHHcccccccCCCcceEEEEehhhhHHHHHHHHHHhcCCCccCcch
Confidence 9999999999999999999999999999999999999999999888888777766544 555
|
|
| >KOG0335|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-60 Score=450.03 Aligned_cols=335 Identities=43% Similarity=0.713 Sum_probs=307.0
Q ss_pred eccc-CCCccccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCC
Q psy9620 104 LKGN-APNPITEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLK 182 (453)
Q Consensus 104 ~~~~-~p~p~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~ 182 (453)
..+. .|.++..|.+..+++.+..+++..+|..|||+|+.+||.+..|+|+++||+||||||.+|++|++.+++......
T Consensus 64 ~~G~~~p~~i~~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~ 143 (482)
T KOG0335|consen 64 VSGRDVPPHIPTFDEAILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPED 143 (482)
T ss_pred ccCCccCCCcccccccchhHHHhhccccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCccc
Confidence 3455 899999999999999999999999999999999999999999999999999999999999999999998765422
Q ss_pred C-----CCCcEEEEEcCCHHHHHHHHHHHHHhcCCCCceEEEEeCCccCCCC----------------------------
Q psy9620 183 P-----GDGPIVLVLAPTRELAQQIQEVARDFGSSTYLRSTCVYGGASKGPQ---------------------------- 229 (453)
Q Consensus 183 ~-----~~~~~vlil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~---------------------------- 229 (453)
. ...|.+||++||||||.|++++.+++.....+++..+||+.+...+
T Consensus 144 ~~~~~~~~~P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~i~ 223 (482)
T KOG0335|consen 144 RGESGGGVYPRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERGKIS 223 (482)
T ss_pred CcccCCCCCCceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcceee
Confidence 1 1358999999999999999999999999999999999999665444
Q ss_pred -------------------------------------CCceEEEEeccCcHHHHHHHHHhhcc-ceEEEecccccccCcc
Q psy9620 230 -------------------------------------PDRQVLMWSATWPREVQKLAEDFLDS-YIQINIGSLTLSANHN 271 (453)
Q Consensus 230 -------------------------------------~~~q~v~~SAT~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 271 (453)
..+|++|||||+|.++..++..++.+ ++.+.+.... ....+
T Consensus 224 l~~~k~~vLDEADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg-~~~~n 302 (482)
T KOG0335|consen 224 LDNCKFLVLDEADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVG-STSEN 302 (482)
T ss_pred hhhCcEEEecchHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeec-ccccc
Confidence 57899999999999999999999986 8888888877 67789
Q ss_pred ceeEEEEccccchhhhHHHHHHhhhcC-CC-----CcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHH
Q psy9620 272 IQQVVEVCAEHEKENKLFGLLNDISSK-DE-----NKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKE 345 (453)
Q Consensus 272 i~~~~~~~~~~~k~~~l~~ll~~~~~~-~~-----~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~ 345 (453)
+.|.+.++.+.+|...|+++|...... .. .+++|||++++.|+.|+.+|...++++..+|++.++.+|++.++.
T Consensus 303 i~q~i~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~ 382 (482)
T KOG0335|consen 303 ITQKILFVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALND 382 (482)
T ss_pred ceeEeeeecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHH
Confidence 999999999999999999999865421 12 389999999999999999999999999999999999999999999
Q ss_pred HhcCCCcEEEEeccCccCCCCCCCcEEEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcCCChHHHHHHHHHHHhcCCC
Q psy9620 346 FRNGRAGILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDLIDVLTESNHP 425 (453)
Q Consensus 346 f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~ 425 (453)
|++|++.|||||++++||||||+|+|||+||+|.+..+|+||+||+||+|..|.++.|++..+....+.|+++|.+++++
T Consensus 383 Fr~g~~pvlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n~~~~~i~~~L~~~l~ea~q~ 462 (482)
T KOG0335|consen 383 FRNGKAPVLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFFNEKNQNIAKALVEILTEANQE 462 (482)
T ss_pred hhcCCcceEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEeccccchhHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHhhcCC
Q psy9620 426 VDPKLSALASRSGG 439 (453)
Q Consensus 426 v~~~l~~~~~~~~~ 439 (453)
||+||.+++.....
T Consensus 463 vP~wl~~~~~~~~~ 476 (482)
T KOG0335|consen 463 VPQWLSELSREREL 476 (482)
T ss_pred CcHHHHhhhhhccc
Confidence 99999997766443
|
|
| >KOG0334|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-60 Score=483.57 Aligned_cols=372 Identities=42% Similarity=0.737 Sum_probs=351.2
Q ss_pred CcccccCC--CCCccccCCCCCCcccCCCCHHHHHHHHHHcC-Ceeccc-CCCccccccccCCCHHHHHHHHHCCCCCCC
Q psy9620 62 ALRAIDWG--NLPPFEKNFFHPSPSVLNRSPHEVQAFRDKHQ-MTLKGN-APNPITEFAEANFPDYVLKEVKRQGFDRPT 137 (453)
Q Consensus 62 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~p~p~~~f~~~~l~~~l~~~l~~~g~~~~~ 137 (453)
.+-.++++ .+.||.++||.+...+..++..+++.++.... |.+.+. +|.|+.+|.+.++...++..++++||..|+
T Consensus 310 ~~~~~~~S~~~~epFRknfy~e~~di~~ms~~eV~~yr~~l~~i~v~g~~~pkpv~sW~q~gl~~~il~tlkkl~y~k~~ 389 (997)
T KOG0334|consen 310 NLIQVDHSKISYEPFRKNFYIEVRDIKRMSAAEVDEYRCELDGIKVKGKECPKPVTSWTQCGLSSKILETLKKLGYEKPT 389 (997)
T ss_pred ceeecccccccchhhhhcccccchhHHHHHHHHHHHhhcCccceeeccCCCCcccchHhhCCchHHHHHHHHHhcCCCCc
Confidence 45556665 78999999999999999999999999999887 889888 999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhcCCCCceE
Q psy9620 138 PIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGSSTYLRS 217 (453)
Q Consensus 138 ~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~~~~~~~~ 217 (453)
|||.+|||+|++|+|+|.+|.||||||++|++|++.|+..++....+.||.+||++|||+||.||.+++++|....++++
T Consensus 390 ~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~li~aPtrela~QI~r~~~kf~k~l~ir~ 469 (997)
T KOG0334|consen 390 PIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIALILAPTRELAMQIHREVRKFLKLLGIRV 469 (997)
T ss_pred chhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCceEEEEcCCHHHHHHHHHHHHHHHhhcCceE
Confidence 99999999999999999999999999999999999999999988889999999999999999999999999999999999
Q ss_pred EEEeCCccCCCC---------------------------------------------------------------CCceE
Q psy9620 218 TCVYGGASKGPQ---------------------------------------------------------------PDRQV 234 (453)
Q Consensus 218 ~~~~gg~~~~~~---------------------------------------------------------------~~~q~ 234 (453)
+|+||+.....+ +++|+
T Consensus 470 v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaDrmfdmgfePq~~~Ii~nlrpdrQt 549 (997)
T KOG0334|consen 470 VCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEADRMFDMGFEPQITRILQNLRPDRQT 549 (997)
T ss_pred EEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccceeeechhhhhheeccCcccchHHhhcchhhhh
Confidence 999999877655 78999
Q ss_pred EEEeccCcHHHHHHHHHhhccceEEEecccccccCccceeEEEEcc-ccchhhhHHHHHHhhhcCCCCcEEEEEcchhHH
Q psy9620 235 LMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCA-EHEKENKLFGLLNDISSKDENKTIIFAETKRKV 313 (453)
Q Consensus 235 v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~ 313 (453)
+++|||+|..+..++...++.|+.+.+.... .+...+.+.+.++. +.+|..+|+++|....+ ..++||||.+...|
T Consensus 550 vlfSatfpr~m~~la~~vl~~Pveiiv~~~s-vV~k~V~q~v~V~~~e~eKf~kL~eLl~e~~e--~~~tiiFv~~qe~~ 626 (997)
T KOG0334|consen 550 VLFSATFPRSMEALARKVLKKPVEIIVGGRS-VVCKEVTQVVRVCAIENEKFLKLLELLGERYE--DGKTIIFVDKQEKA 626 (997)
T ss_pred hhhhhhhhHHHHHHHHHhhcCCeeEEEccce-eEeccceEEEEEecCchHHHHHHHHHHHHHhh--cCCEEEEEcCchHH
Confidence 9999999999999999999999998877544 67788999999998 88999999999988654 77999999999999
Q ss_pred HHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEEEcCCCCChhHHHHhhhcccC
Q psy9620 314 DKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGR 393 (453)
Q Consensus 314 ~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR 393 (453)
+.+.+.|.+.++.+..+||+.++.+|..++++|+++.+++||||+++++|+|++++.+|||||+|...++|+||+|||||
T Consensus 627 d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgr 706 (997)
T KOG0334|consen 627 DALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELILVVNYDFPNHYEDYVHRVGRTGR 706 (997)
T ss_pred HHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhcccccccceEEEEcccchhHHHHHHHhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcceEEEEEcCCChHHHHHHHHHHHhcCCCCChHHHHHHhh
Q psy9620 394 SDNTGTSYTFFTQQNSRQAKDLIDVLTESNHPVDPKLSALASR 436 (453)
Q Consensus 394 ~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~v~~~l~~~~~~ 436 (453)
+|..|.|++|+++.+...+.+|++.|+...+++|..|..|...
T Consensus 707 agrkg~AvtFi~p~q~~~a~dl~~al~~~~~~~P~~l~~l~~~ 749 (997)
T KOG0334|consen 707 AGRKGAAVTFITPDQLKYAGDLCKALELSKQPVPKLLQALSER 749 (997)
T ss_pred CCccceeEEEeChHHhhhHHHHHHHHHhccCCCchHHHHHHHH
Confidence 9999999999999999999999999999999999999998754
|
|
| >KOG0341|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-61 Score=434.74 Aligned_cols=355 Identities=38% Similarity=0.647 Sum_probs=311.4
Q ss_pred cCCCCCCcccCCCCHHHHHHHHHHcCCeeccc-CCCccccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEE
Q psy9620 76 KNFFHPSPSVLNRSPHEVQAFRDKHQMTLKGN-APNPITEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMV 154 (453)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~p~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l 154 (453)
+.+|.+.-.+..+|.++-+..+.+..|.++|. +|+|+.+|.++.+|..+++.|++.|+..|||+|.+.+|.+++|+|+|
T Consensus 132 ~T~WkPP~hir~mS~e~~e~vRk~~~I~veGd~ipPPIksF~eMKFP~~~L~~lk~KGI~~PTpIQvQGlPvvLsGRDmI 211 (610)
T KOG0341|consen 132 KTAWKPPRHIRKMSEEQRELVRKQLHILVEGDDIPPPIKSFKEMKFPKPLLRGLKKKGIVHPTPIQVQGLPVVLSGRDMI 211 (610)
T ss_pred hhccCCcHHHHHhhHHHHHHHHHhheEEeeCCCCCCchhhhhhccCCHHHHHHHHhcCCCCCCceeecCcceEeecCcee
Confidence 34566666677788888888888899999999 99999999999999999999999999999999999999999999999
Q ss_pred EEecCCCcchhhhhHHHHHHhhhcC---CCCCCCCcEEEEEcCCHHHHHHHHHHHHHhcC------CCCceEEEEeCCcc
Q psy9620 155 GVAQTGSGKTLAYMLPAIVHINHQS---QLKPGDGPIVLVLAPTRELAQQIQEVARDFGS------STYLRSTCVYGGAS 225 (453)
Q Consensus 155 i~a~TGsGKT~~~~l~~l~~~~~~~---~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~~------~~~~~~~~~~gg~~ 225 (453)
.+|-||||||++|.+|++.....+. ....+.+|..||+||+||||.|+++.+..++. ...+++..+.||.+
T Consensus 212 GIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~ 291 (610)
T KOG0341|consen 212 GIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVP 291 (610)
T ss_pred eEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCcc
Confidence 9999999999999999987766543 34557899999999999999999988777642 33567778888877
Q ss_pred CCCC------------------------------------------------------------CCceEEEEeccCcHHH
Q psy9620 226 KGPQ------------------------------------------------------------PDRQVLMWSATWPREV 245 (453)
Q Consensus 226 ~~~~------------------------------------------------------------~~~q~v~~SAT~~~~~ 245 (453)
...+ ..+|+++||||+|..+
T Consensus 292 v~eql~~v~~GvHivVATPGRL~DmL~KK~~sLd~CRyL~lDEADRmiDmGFEddir~iF~~FK~QRQTLLFSATMP~KI 371 (610)
T KOG0341|consen 292 VREQLDVVRRGVHIVVATPGRLMDMLAKKIMSLDACRYLTLDEADRMIDMGFEDDIRTIFSFFKGQRQTLLFSATMPKKI 371 (610)
T ss_pred HHHHHHHHhcCeeEEEcCcchHHHHHHHhhccHHHHHHhhhhhHHHHhhccchhhHHHHHHHHhhhhheeeeeccccHHH
Confidence 6655 6799999999999999
Q ss_pred HHHHHHhhccceEEEecccccccCccceeEEEEccccchhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCC
Q psy9620 246 QKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGW 325 (453)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~ 325 (453)
+.+++.-+..|+.++++.... .+.++.|.+.++....|...|++.|. +...++||||..+.+++.+.++|.-.|.
T Consensus 372 Q~FAkSALVKPvtvNVGRAGA-AsldViQevEyVkqEaKiVylLeCLQ----KT~PpVLIFaEkK~DVD~IhEYLLlKGV 446 (610)
T KOG0341|consen 372 QNFAKSALVKPVTVNVGRAGA-ASLDVIQEVEYVKQEAKIVYLLECLQ----KTSPPVLIFAEKKADVDDIHEYLLLKGV 446 (610)
T ss_pred HHHHHhhcccceEEecccccc-cchhHHHHHHHHHhhhhhhhHHHHhc----cCCCceEEEeccccChHHHHHHHHHccc
Confidence 999999999999999998874 44555566666655555444444333 3467999999999999999999999999
Q ss_pred eEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEEEcCCCCChhHHHHhhhcccCCCCcceEEEEEc
Q psy9620 326 AAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFT 405 (453)
Q Consensus 326 ~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~ 405 (453)
.++.+||+.++++|...++.|+.|+.+||||||+++.|+|+|++.||||||+|..++.|+||+||+||.|++|.+.+|++
T Consensus 447 EavaIHGGKDQedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiATTfIN 526 (610)
T KOG0341|consen 447 EAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIATTFIN 526 (610)
T ss_pred eeEEeecCcchhHHHHHHHHHhcCCCceEEEecchhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcceeeeeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC-ChHHHHHHHHHHHhcCCCCChHHHHHHh
Q psy9620 406 QQ-NSRQAKDLIDVLTESNHPVDPKLSALAS 435 (453)
Q Consensus 406 ~~-~~~~~~~l~~~l~~~~~~v~~~l~~~~~ 435 (453)
.+ +...+-+|...|.++.|++|+.|.+++.
T Consensus 527 K~~~esvLlDLK~LL~EakQ~vP~~L~~L~~ 557 (610)
T KOG0341|consen 527 KNQEESVLLDLKHLLQEAKQEVPPVLAELAG 557 (610)
T ss_pred ccchHHHHHHHHHHHHHhhccCCHHHHHhCC
Confidence 85 4556777888899999999999999974
|
|
| >KOG0328|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-58 Score=400.67 Aligned_cols=317 Identities=32% Similarity=0.568 Sum_probs=289.4
Q ss_pred CCCccccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCc
Q psy9620 108 APNPITEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGP 187 (453)
Q Consensus 108 ~p~p~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~ 187 (453)
...++.+|++++|.+.+++.+...||.+|+.+|+.|++.++.|+|++++|+.|+|||.+|.+.+|+.+.-.. ...
T Consensus 22 ~~~v~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~~-----r~t 96 (400)
T KOG0328|consen 22 KVKVIPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDISV-----RET 96 (400)
T ss_pred CcccccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeeccccc-----cee
Confidence 456778999999999999999999999999999999999999999999999999999999999988765432 346
Q ss_pred EEEEEcCCHHHHHHHHHHHHHhcCCCCceEEEEeCCccCCCC--------------------------------------
Q psy9620 188 IVLVLAPTRELAQQIQEVARDFGSSTYLRSTCVYGGASKGPQ-------------------------------------- 229 (453)
Q Consensus 188 ~vlil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~-------------------------------------- 229 (453)
.+|||+||||||.|+.+.+..++...++.+..+.||.+....
T Consensus 97 Q~lilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLD 176 (400)
T KOG0328|consen 97 QALILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLD 176 (400)
T ss_pred eEEEecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhccccccceeEEEec
Confidence 799999999999999999999999999999999999885443
Q ss_pred ----------------------CCceEEEEeccCcHHHHHHHHHhhccceEEEecccccccCccceeEEEEccccc-hhh
Q psy9620 230 ----------------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHE-KEN 286 (453)
Q Consensus 230 ----------------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-k~~ 286 (453)
+..|++++|||+|.++.++.+.|+.+|+.+.+...+++. +.+++++..+..++ |.+
T Consensus 177 EaDemL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdeltl-EgIKqf~v~ve~EewKfd 255 (400)
T KOG0328|consen 177 EADEMLNKGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDELTL-EGIKQFFVAVEKEEWKFD 255 (400)
T ss_pred cHHHHHHhhHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCCch-hhhhhheeeechhhhhHh
Confidence 689999999999999999999999999999988877544 55778777776655 888
Q ss_pred hHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCC
Q psy9620 287 KLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDV 366 (453)
Q Consensus 287 ~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDi 366 (453)
.|.++...+ .-.+++|||||+..++.|.+.|++..+.+..+||+|+++||+.++++|++|+.+||++||+.+||||+
T Consensus 256 tLcdLYd~L---tItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv 332 (400)
T KOG0328|consen 256 TLCDLYDTL---TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDV 332 (400)
T ss_pred HHHHHhhhh---ehheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCc
Confidence 888887765 24589999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcCCChHHHHHHHHHHHhcCCCCChHHHHH
Q psy9620 367 DDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDLIDVLTESNHPVDPKLSAL 433 (453)
Q Consensus 367 p~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~v~~~l~~~ 433 (453)
|.|++|||||+|.+.+.|+||+||+||.|.+|.++-|+..++.+.++++..++.-...++|-.+.++
T Consensus 333 ~qVslviNYDLP~nre~YIHRIGRSGRFGRkGvainFVk~~d~~~lrdieq~yst~i~emp~nvad~ 399 (400)
T KOG0328|consen 333 QQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDLRILRDIEQYYSTQIDEMPMNVADL 399 (400)
T ss_pred ceeEEEEecCCCccHHHHhhhhccccccCCcceEEEEecHHHHHHHHHHHHHHhhhcccccchhhhc
Confidence 9999999999999999999999999999999999999999999999999999998888888776543
|
|
| >COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-57 Score=453.72 Aligned_cols=313 Identities=40% Similarity=0.653 Sum_probs=276.9
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEE
Q psy9620 113 TEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVL 192 (453)
Q Consensus 113 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil 192 (453)
..|+++++++.+++++.+.||..|||+|.++||.++.|+|++++|+||||||++|++|+++.+..... ....+ +||+
T Consensus 29 ~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~--~~~~~-aLil 105 (513)
T COG0513 29 PEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVE--RKYVS-ALIL 105 (513)
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcccc--cCCCc-eEEE
Confidence 68999999999999999999999999999999999999999999999999999999999999764311 11122 9999
Q ss_pred cCCHHHHHHHHHHHHHhcCCC-CceEEEEeCCccCCCC------------------------------------------
Q psy9620 193 APTRELAQQIQEVARDFGSST-YLRSTCVYGGASKGPQ------------------------------------------ 229 (453)
Q Consensus 193 ~Ptr~La~q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~------------------------------------------ 229 (453)
+||||||.|+++.+..++... ++++.+++||.+...+
T Consensus 106 ~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEADr 185 (513)
T COG0513 106 APTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEADR 185 (513)
T ss_pred CCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEeccHhh
Confidence 999999999999999999888 7999999999875543
Q ss_pred ------------------CCceEEEEeccCcHHHHHHHHHhhccceEEEeccccc-ccCccceeEEEEccccc-hhhhHH
Q psy9620 230 ------------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTL-SANHNIQQVVEVCAEHE-KENKLF 289 (453)
Q Consensus 230 ------------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~-k~~~l~ 289 (453)
.++|+++||||+|..+..+++.++.++..+.+..... .....+.|.+..+...+ |...|.
T Consensus 186 mLd~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~~L~ 265 (513)
T COG0513 186 MLDMGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLELLL 265 (513)
T ss_pred hhcCCCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHHHHHHHHH
Confidence 5699999999999999999999999998888773332 35678889988888765 777777
Q ss_pred HHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCC
Q psy9620 290 GLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDV 369 (453)
Q Consensus 290 ~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v 369 (453)
.++... ...++||||+|+..|+.|+..|...++.+..+||+|++.+|..+++.|++|+.+||||||+++||||||+|
T Consensus 266 ~ll~~~---~~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v 342 (513)
T COG0513 266 KLLKDE---DEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDV 342 (513)
T ss_pred HHHhcC---CCCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCcccc
Confidence 777654 34479999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcCC-ChHHHHHHHHHHHhc---CCCCChHHH
Q psy9620 370 KFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQ-NSRQAKDLIDVLTES---NHPVDPKLS 431 (453)
Q Consensus 370 ~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~-~~~~~~~l~~~l~~~---~~~v~~~l~ 431 (453)
++|||||+|.+.++|+||+||+||+|..|.+++|+++. +...++.+.+.+... ...+|....
T Consensus 343 ~~VinyD~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~~e~~~l~~ie~~~~~~~~~~~~~~~~~~ 408 (513)
T COG0513 343 SHVINYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVKKLKRIEKRLERKLPSAVLLPLDEP 408 (513)
T ss_pred ceeEEccCCCCHHHheeccCccccCCCCCeEEEEeCcHHHHHHHHHHHHHHhccccccccCCcchh
Confidence 99999999999999999999999999999999999986 888888888877654 234554433
|
|
| >KOG0340|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-56 Score=402.01 Aligned_cols=306 Identities=32% Similarity=0.501 Sum_probs=274.1
Q ss_pred cccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEE
Q psy9620 112 ITEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLV 191 (453)
Q Consensus 112 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vli 191 (453)
...|+.++|++|+.+.++++|+.+|||+|..+||.|+.|+|+|.+|.||||||.+|.+|+|+.+..++ .+-.+||
T Consensus 6 ~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP-----~giFalv 80 (442)
T KOG0340|consen 6 AKPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDP-----YGIFALV 80 (442)
T ss_pred cCchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCC-----CcceEEE
Confidence 46799999999999999999999999999999999999999999999999999999999999998765 5888999
Q ss_pred EcCCHHHHHHHHHHHHHhcCCCCceEEEEeCCccCCCC------------------------------------------
Q psy9620 192 LAPTRELAQQIQEVARDFGSSTYLRSTCVYGGASKGPQ------------------------------------------ 229 (453)
Q Consensus 192 l~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~------------------------------------------ 229 (453)
++||||||.|+.+.|..+++..++++.+++||.+.-.+
T Consensus 81 lTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlD 160 (442)
T KOG0340|consen 81 LTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLD 160 (442)
T ss_pred ecchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEec
Confidence 99999999999999999999999999999999765333
Q ss_pred ----------------------CCceEEEEeccCcHHHHHHHHHhhccceEEEec-ccccccCccceeEEEEccccchhh
Q psy9620 230 ----------------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIG-SLTLSANHNIQQVVEVCAEHEKEN 286 (453)
Q Consensus 230 ----------------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~k~~ 286 (453)
..+|+++||||+...+..+...-....+..... ....+....+.+.+..++...+..
T Consensus 161 EADrvL~~~f~d~L~~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~~vkda 240 (442)
T KOG0340|consen 161 EADRVLAGCFPDILEGIEECLPKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSIDVKDA 240 (442)
T ss_pred chhhhhccchhhHHhhhhccCCCccceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhheeecchhhhHH
Confidence 457999999999988877655443332111111 133456677888899999999999
Q ss_pred hHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCC
Q psy9620 287 KLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDV 366 (453)
Q Consensus 287 ~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDi 366 (453)
.|..+|....+++.+.++||+++..+|+.|+..|....+.+..+|+-|+|.+|...+.+|+++..+||||||+++||+||
T Consensus 241 YLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDI 320 (442)
T KOG0340|consen 241 YLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGLDI 320 (442)
T ss_pred HHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCCC
Confidence 99999999877667899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcCCChHHHHHHHHHHHhc
Q psy9620 367 DDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDLIDVLTES 422 (453)
Q Consensus 367 p~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~ 422 (453)
|.|.+|||||+|.++.+|+||+||++|+|..|.+++|+++.|.+.+..+.+.+...
T Consensus 321 P~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSivt~rDv~l~~aiE~~igkK 376 (442)
T KOG0340|consen 321 PTVELVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVTQRDVELLQAIEEEIGKK 376 (442)
T ss_pred CceeEEEecCCCCCHHHHHHhhcchhcccCCcceEEEechhhHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999988888777655443
|
|
| >PRK04837 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-54 Score=427.09 Aligned_cols=308 Identities=32% Similarity=0.501 Sum_probs=266.1
Q ss_pred ccccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCC--CCCCCcE
Q psy9620 111 PITEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQL--KPGDGPI 188 (453)
Q Consensus 111 p~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~--~~~~~~~ 188 (453)
+-.+|++++|++.+++++.++||..|||+|+++||.+++|+|++++||||||||++|++|+++.+...+.. ....+++
T Consensus 6 ~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~ 85 (423)
T PRK04837 6 TEQKFSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPR 85 (423)
T ss_pred CCCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCce
Confidence 33689999999999999999999999999999999999999999999999999999999999988764332 1124689
Q ss_pred EEEEcCCHHHHHHHHHHHHHhcCCCCceEEEEeCCccCCCC---------------------------------------
Q psy9620 189 VLVLAPTRELAQQIQEVARDFGSSTYLRSTCVYGGASKGPQ--------------------------------------- 229 (453)
Q Consensus 189 vlil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~--------------------------------------- 229 (453)
+|||+||+|||.|+++.+..+....++++..++|+.....+
T Consensus 86 ~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDE 165 (423)
T PRK04837 86 ALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDE 165 (423)
T ss_pred EEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEec
Confidence 99999999999999999999998889999999887642211
Q ss_pred -----------------------CCceEEEEeccCcHHHHHHHHHhhccceEEEecccccccCccceeEEEEccccchhh
Q psy9620 230 -----------------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKEN 286 (453)
Q Consensus 230 -----------------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~ 286 (453)
..++.+++|||++..+..++..++.++..+.+.... .....+.+.+......++..
T Consensus 166 ad~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~-~~~~~i~~~~~~~~~~~k~~ 244 (423)
T PRK04837 166 ADRMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQ-KTGHRIKEELFYPSNEEKMR 244 (423)
T ss_pred HHHHhhcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCC-cCCCceeEEEEeCCHHHHHH
Confidence 246789999999999999998888888777665443 23345666665555556666
Q ss_pred hHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCC
Q psy9620 287 KLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDV 366 (453)
Q Consensus 287 ~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDi 366 (453)
.+..++.. ....++||||+++..|+.++..|...++.+..+||+|++.+|..+++.|++|+++|||||+++++|||+
T Consensus 245 ~l~~ll~~---~~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDi 321 (423)
T PRK04837 245 LLQTLIEE---EWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHI 321 (423)
T ss_pred HHHHHHHh---cCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCc
Confidence 66666543 245689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcCCChHHHHHHHHHHHhc
Q psy9620 367 DDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDLIDVLTES 422 (453)
Q Consensus 367 p~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~ 422 (453)
|+|++|||||+|.+.++|+||+||+||.|+.|.|++|+++.+...+..+.+.+...
T Consensus 322 p~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~~~~~~i~~~~~~~ 377 (423)
T PRK04837 322 PAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYIGHS 377 (423)
T ss_pred cccCEEEEeCCCCchhheEeccccccCCCCCeeEEEEeCHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999888888876666544
|
|
| >KOG0338|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-54 Score=403.93 Aligned_cols=301 Identities=32% Similarity=0.518 Sum_probs=270.4
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEE
Q psy9620 113 TEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVL 192 (453)
Q Consensus 113 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil 192 (453)
.+|.+++|+-.|++++..+||..|||+|..+||..+-|+|++.||.||||||.+|++|+|.++...++. -...+||||
T Consensus 181 ~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~--~~~TRVLVL 258 (691)
T KOG0338|consen 181 ESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKK--VAATRVLVL 258 (691)
T ss_pred hhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCccc--CcceeEEEE
Confidence 589999999999999999999999999999999999999999999999999999999999999886653 245689999
Q ss_pred cCCHHHHHHHHHHHHHhcCCCCceEEEEeCCccCCCC-------------------------------------------
Q psy9620 193 APTRELAQQIQEVARDFGSSTYLRSTCVYGGASKGPQ------------------------------------------- 229 (453)
Q Consensus 193 ~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~------------------------------------------- 229 (453)
||||||+.|++...++++....|.++.+.||.+...|
T Consensus 259 ~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEADR 338 (691)
T KOG0338|consen 259 VPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEADR 338 (691)
T ss_pred eccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHHH
Confidence 9999999999999999999999999999999887655
Q ss_pred ------------------CCceEEEEeccCcHHHHHHHHHhhccceEEEecccccccCccceeEEEEc--cccchhhhHH
Q psy9620 230 ------------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVC--AEHEKENKLF 289 (453)
Q Consensus 230 ------------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~k~~~l~ 289 (453)
..+|+++||||++.++.+++..-+.+|+.+.+..........-+.++..- .+.++...+.
T Consensus 339 MLeegFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~~re~dRea~l~ 418 (691)
T KOG0338|consen 339 MLEEGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPKREGDREAMLA 418 (691)
T ss_pred HHHHHHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhHHHheeccccccccHHHHH
Confidence 68999999999999999999999999999999876644333333333322 2345666677
Q ss_pred HHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCC
Q psy9620 290 GLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDV 369 (453)
Q Consensus 290 ~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v 369 (453)
.++.... ...+|||+.|+++|..+.-.|--.|+.+.-+||.++|.+|...++.|++.+++||||||+++|||||+.|
T Consensus 419 ~l~~rtf---~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV 495 (691)
T KOG0338|consen 419 SLITRTF---QDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGV 495 (691)
T ss_pred HHHHHhc---ccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCccce
Confidence 7776543 5689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcCCChHHHHHHHHH
Q psy9620 370 KFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDLIDV 418 (453)
Q Consensus 370 ~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~ 418 (453)
..||||++|.+++.|+||+||++|+|..|.+++|+.+.+...++.++..
T Consensus 496 ~tVINy~mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE~dRkllK~iik~ 544 (691)
T KOG0338|consen 496 QTVINYAMPKTIEHYLHRVGRTARAGRAGRSVTLVGESDRKLLKEIIKS 544 (691)
T ss_pred eEEEeccCchhHHHHHHHhhhhhhcccCcceEEEeccccHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999988888865
|
|
| >PRK04537 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-53 Score=430.06 Aligned_cols=307 Identities=36% Similarity=0.585 Sum_probs=265.3
Q ss_pred cccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCC--CCCCCcEE
Q psy9620 112 ITEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQL--KPGDGPIV 189 (453)
Q Consensus 112 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~--~~~~~~~v 189 (453)
..+|++++|++.|++.|.++||..|||+|+++||.+++|+|++++||||||||++|++|++.++...... .....+++
T Consensus 8 ~~~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~ra 87 (572)
T PRK04537 8 DLTFSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRA 87 (572)
T ss_pred CCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceE
Confidence 3479999999999999999999999999999999999999999999999999999999999988654321 11236899
Q ss_pred EEEcCCHHHHHHHHHHHHHhcCCCCceEEEEeCCccCCCC----------------------------------------
Q psy9620 190 LVLAPTRELAQQIQEVARDFGSSTYLRSTCVYGGASKGPQ---------------------------------------- 229 (453)
Q Consensus 190 lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~---------------------------------------- 229 (453)
|||+||+|||.|+++.+.+++...++++..++|+.....+
T Consensus 88 LIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDE 167 (572)
T PRK04537 88 LILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDE 167 (572)
T ss_pred EEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecC
Confidence 9999999999999999999998889999999988653211
Q ss_pred -----------------------CCceEEEEeccCcHHHHHHHHHhhccceEEEecccccccCccceeEEEEccccchhh
Q psy9620 230 -----------------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKEN 286 (453)
Q Consensus 230 -----------------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~ 286 (453)
..+|+++||||++..+..++..++.++..+.+.... .....+.+.+......++..
T Consensus 168 Ah~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~-~~~~~i~q~~~~~~~~~k~~ 246 (572)
T PRK04537 168 ADRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETET-ITAARVRQRIYFPADEEKQT 246 (572)
T ss_pred HHHHhhcchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEecccc-ccccceeEEEEecCHHHHHH
Confidence 268999999999999999999988887666554433 23345666666666666666
Q ss_pred hHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCC
Q psy9620 287 KLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDV 366 (453)
Q Consensus 287 ~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDi 366 (453)
.+..++.. ....++||||+++..|+.|++.|...++.+..+|++|++.+|..+++.|++|+++|||||+++++|||+
T Consensus 247 ~L~~ll~~---~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDi 323 (572)
T PRK04537 247 LLLGLLSR---SEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHI 323 (572)
T ss_pred HHHHHHhc---ccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCc
Confidence 56555543 346699999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcCCChHHHHHHHHHHHhc
Q psy9620 367 DDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDLIDVLTES 422 (453)
Q Consensus 367 p~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~ 422 (453)
|+|++|||||+|.+.++|+||+||+||.|..|.|++|+++.+...++++.+.+...
T Consensus 324 p~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~~~~l~~i~~~~~~~ 379 (572)
T PRK04537 324 DGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIEAYIEQK 379 (572)
T ss_pred cCCCEEEEcCCCCCHHHHhhhhcccccCCCCceEEEEecHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999998888888877766543
|
|
| >PRK10590 ATP-dependent RNA helicase RhlE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-53 Score=422.21 Aligned_cols=305 Identities=34% Similarity=0.609 Sum_probs=264.3
Q ss_pred cccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCC-CCCCcEEEEE
Q psy9620 114 EFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLK-PGDGPIVLVL 192 (453)
Q Consensus 114 ~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~-~~~~~~vlil 192 (453)
+|++++|++.+++.|.++||..||++|.++||.+++++|+|++||||||||++|++|+++.+....... ....+++|||
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil 81 (456)
T PRK10590 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALIL 81 (456)
T ss_pred CHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEE
Confidence 689999999999999999999999999999999999999999999999999999999999886543221 1234689999
Q ss_pred cCCHHHHHHHHHHHHHhcCCCCceEEEEeCCccCCCC-------------------------------------------
Q psy9620 193 APTRELAQQIQEVARDFGSSTYLRSTCVYGGASKGPQ------------------------------------------- 229 (453)
Q Consensus 193 ~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~------------------------------------------- 229 (453)
+||++||.|+.+.+..+....++++..++|+.+...+
T Consensus 82 ~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah~l 161 (456)
T PRK10590 82 TPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRM 161 (456)
T ss_pred eCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHHHH
Confidence 9999999999999999988888888888888653211
Q ss_pred -----------------CCceEEEEeccCcHHHHHHHHHhhccceEEEecccccccCccceeEEEEccccchhhhHHHHH
Q psy9620 230 -----------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLL 292 (453)
Q Consensus 230 -----------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll 292 (453)
..+|++++|||++.++..++..++.++..+.+.... .....+.+.+..+....+...+..++
T Consensus 162 l~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~-~~~~~i~~~~~~~~~~~k~~~l~~l~ 240 (456)
T PRK10590 162 LDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRN-TASEQVTQHVHFVDKKRKRELLSQMI 240 (456)
T ss_pred hccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEeccc-ccccceeEEEEEcCHHHHHHHHHHHH
Confidence 457999999999999999999999888777665433 33455666776666655555444444
Q ss_pred HhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEE
Q psy9620 293 NDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFV 372 (453)
Q Consensus 293 ~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~V 372 (453)
.. ....++||||+++..|+.+++.|...++.+..+|++|++.+|..+++.|++|+++|||||+++++|||+|+|++|
T Consensus 241 ~~---~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~V 317 (456)
T PRK10590 241 GK---GNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHV 317 (456)
T ss_pred Hc---CCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEE
Confidence 32 345689999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCChhHHHHhhhcccCCCCcceEEEEEcCCChHHHHHHHHHHHhc
Q psy9620 373 INFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDLIDVLTES 422 (453)
Q Consensus 373 I~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~ 422 (453)
||||+|.+.++|+||+||+||+|..|.|++|++..+...++.+.+.+...
T Consensus 318 I~~~~P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~~~~~~ie~~l~~~ 367 (456)
T PRK10590 318 VNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKE 367 (456)
T ss_pred EEeCCCCCHHHhhhhccccccCCCCeeEEEEecHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999988888887776644
|
|
| >KOG0326|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-54 Score=383.88 Aligned_cols=309 Identities=31% Similarity=0.557 Sum_probs=285.4
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEE
Q psy9620 113 TEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVL 192 (453)
Q Consensus 113 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil 192 (453)
..|++..|...|+..+.+.||..|+|+|.++||+++.|+|+++-|..|+|||.+|++|+|..+.... ....++|+
T Consensus 85 ~efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~~-----~~IQ~~il 159 (459)
T KOG0326|consen 85 NEFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPKK-----NVIQAIIL 159 (459)
T ss_pred ccHHHhhhhHHHHHHHHHhccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCccc-----cceeEEEE
Confidence 4789999999999999999999999999999999999999999999999999999999999886543 46679999
Q ss_pred cCCHHHHHHHHHHHHHhcCCCCceEEEEeCCccCCCC-------------------------------------------
Q psy9620 193 APTRELAQQIQEVARDFGSSTYLRSTCVYGGASKGPQ------------------------------------------- 229 (453)
Q Consensus 193 ~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~------------------------------------------- 229 (453)
+||||||.|+...++++++..++++.+..||++....
T Consensus 160 VPtrelALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEADKl 239 (459)
T KOG0326|consen 160 VPTRELALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEADKL 239 (459)
T ss_pred eecchhhHHHHHHHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhcccccchhceEEEechhhhh
Confidence 9999999999999999999999999999999887655
Q ss_pred -----------------CCceEEEEeccCcHHHHHHHHHhhccceEEEecccccccCccceeEEEEccccchhhhHHHHH
Q psy9620 230 -----------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLL 292 (453)
Q Consensus 230 -----------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll 292 (453)
..+|++++|||+|-.+..+...++.+|..+..... -....+.|++.++.+..|...|..+.
T Consensus 240 Ls~~F~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~INLM~e--Ltl~GvtQyYafV~e~qKvhCLntLf 317 (459)
T KOG0326|consen 240 LSVDFQPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEINLMEE--LTLKGVTQYYAFVEERQKVHCLNTLF 317 (459)
T ss_pred hchhhhhHHHHHHHhCCccceeeEEecccchhHHHHHHHhccCcceeehhhh--hhhcchhhheeeechhhhhhhHHHHH
Confidence 68999999999999999999999999998876543 33467889999999999988888887
Q ss_pred HhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEE
Q psy9620 293 NDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFV 372 (453)
Q Consensus 293 ~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~V 372 (453)
..+ .-...||||||...++.||..+.+.|+.+.++|+.|-++.|..++.+|++|.++.|||||.+.||||+++|++|
T Consensus 318 skL---qINQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvV 394 (459)
T KOG0326|consen 318 SKL---QINQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVV 394 (459)
T ss_pred HHh---cccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEE
Confidence 766 34588999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCChhHHHHhhhcccCCCCcceEEEEEcCCChHHHHHHHHHHHhcCCCCChHHH
Q psy9620 373 INFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDLIDVLTESNHPVDPKLS 431 (453)
Q Consensus 373 I~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~v~~~l~ 431 (453)
||||+|++.++|+||+||+||.|..|.++.+++.+|...+.++.+.|-....++|+.++
T Consensus 395 INFDfpk~aEtYLHRIGRsGRFGhlGlAInLityedrf~L~~IE~eLGtEI~pip~~iD 453 (459)
T KOG0326|consen 395 INFDFPKNAETYLHRIGRSGRFGHLGLAINLITYEDRFNLYRIEQELGTEIKPIPSNID 453 (459)
T ss_pred EecCCCCCHHHHHHHccCCccCCCcceEEEEEehhhhhhHHHHHHHhccccccCCCcCC
Confidence 99999999999999999999999999999999999999999998888888888886554
|
|
| >PRK11776 ATP-dependent RNA helicase DbpA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-52 Score=418.79 Aligned_cols=299 Identities=32% Similarity=0.542 Sum_probs=263.5
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEE
Q psy9620 113 TEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVL 192 (453)
Q Consensus 113 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil 192 (453)
.+|++++|++.+++++.++||..|||+|+++||.+++++|++++||||||||++|++|++.++.... ..+++|||
T Consensus 4 ~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~-----~~~~~lil 78 (460)
T PRK11776 4 TAFSTLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKR-----FRVQALVL 78 (460)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhcc-----CCceEEEE
Confidence 5799999999999999999999999999999999999999999999999999999999999875432 35679999
Q ss_pred cCCHHHHHHHHHHHHHhcCCC-CceEEEEeCCccCCCC------------------------------------------
Q psy9620 193 APTRELAQQIQEVARDFGSST-YLRSTCVYGGASKGPQ------------------------------------------ 229 (453)
Q Consensus 193 ~Ptr~La~q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~------------------------------------------ 229 (453)
+||+|||.|+.+.++.++... ++++..++|+.+...+
T Consensus 79 ~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad~ 158 (460)
T PRK11776 79 CPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEADR 158 (460)
T ss_pred eCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHHH
Confidence 999999999999999987644 6888888888654211
Q ss_pred ------------------CCceEEEEeccCcHHHHHHHHHhhccceEEEecccccccCccceeEEEEccccchhhhHHHH
Q psy9620 230 ------------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGL 291 (453)
Q Consensus 230 ------------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~l 291 (453)
..+|++++|||+++.+..++..++.++..+.+.... ....+.+.+..+...++...+..+
T Consensus 159 ~l~~g~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~--~~~~i~~~~~~~~~~~k~~~l~~l 236 (460)
T PRK11776 159 MLDMGFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTH--DLPAIEQRFYEVSPDERLPALQRL 236 (460)
T ss_pred HhCcCcHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCC--CCCCeeEEEEEeCcHHHHHHHHHH
Confidence 568999999999999999999999998877765543 234477777767666677777776
Q ss_pred HHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcE
Q psy9620 292 LNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKF 371 (453)
Q Consensus 292 l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~ 371 (453)
+... ...++||||+++..|+.+++.|...++.+..+||+|++.+|+.+++.|++|+.+|||||+++++|||+|++++
T Consensus 237 l~~~---~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~ 313 (460)
T PRK11776 237 LLHH---QPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEA 313 (460)
T ss_pred HHhc---CCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCe
Confidence 6543 4568999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcCCChHHHHHHHHHHHh
Q psy9620 372 VINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDLIDVLTE 421 (453)
Q Consensus 372 VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~l~~ 421 (453)
||+||+|.+.++|+||+||+||+|..|.|++|+++.+...++.+.+.+..
T Consensus 314 VI~~d~p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~~~~~~i~~~~~~ 363 (460)
T PRK11776 314 VINYELARDPEVHVHRIGRTGRAGSKGLALSLVAPEEMQRANAIEDYLGR 363 (460)
T ss_pred EEEecCCCCHhHhhhhcccccCCCCcceEEEEEchhHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999988887777766554
|
|
| >PRK11634 ATP-dependent RNA helicase DeaD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-52 Score=425.15 Aligned_cols=300 Identities=34% Similarity=0.601 Sum_probs=260.6
Q ss_pred cccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEE
Q psy9620 112 ITEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLV 191 (453)
Q Consensus 112 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vli 191 (453)
..+|++++|++.++++|.++||.+|+|+|+++||.+++++|+|++||||||||++|++|++..+.... ..+++||
T Consensus 5 ~~~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~~-----~~~~~LI 79 (629)
T PRK11634 5 ETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPEL-----KAPQILV 79 (629)
T ss_pred cCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhcc-----CCCeEEE
Confidence 35699999999999999999999999999999999999999999999999999999999998875432 4678999
Q ss_pred EcCCHHHHHHHHHHHHHhcCCC-CceEEEEeCCccCCCC-----------------------------------------
Q psy9620 192 LAPTRELAQQIQEVARDFGSST-YLRSTCVYGGASKGPQ----------------------------------------- 229 (453)
Q Consensus 192 l~Ptr~La~q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~----------------------------------------- 229 (453)
|+||++||.|+++.+..+.... ++.+..++|+.+...+
T Consensus 80 L~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd 159 (629)
T PRK11634 80 LAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEAD 159 (629)
T ss_pred EeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHH
Confidence 9999999999999999886554 6888888888653211
Q ss_pred -------------------CCceEEEEeccCcHHHHHHHHHhhccceEEEecccccccCccceeEEEEccccchhhhHHH
Q psy9620 230 -------------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFG 290 (453)
Q Consensus 230 -------------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ 290 (453)
...|+++||||+|..+..+++.++.++..+.+.... .....+.+.+..+....|...|..
T Consensus 160 ~ml~~gf~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~-~~~~~i~q~~~~v~~~~k~~~L~~ 238 (629)
T PRK11634 160 EMLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSV-TTRPDISQSYWTVWGMRKNEALVR 238 (629)
T ss_pred HHhhcccHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCcc-ccCCceEEEEEEechhhHHHHHHH
Confidence 468999999999999999999999998877665543 233456666666665566666666
Q ss_pred HHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCc
Q psy9620 291 LLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVK 370 (453)
Q Consensus 291 ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~ 370 (453)
++.. ....++||||+|+..++.|++.|...++.+..+|++|++.+|+.++++|++|+++|||||+++++|||+|+|+
T Consensus 239 ~L~~---~~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~ 315 (629)
T PRK11634 239 FLEA---EDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERIS 315 (629)
T ss_pred HHHh---cCCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCC
Confidence 6654 3456899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcCCChHHHHHHHHHHH
Q psy9620 371 FVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDLIDVLT 420 (453)
Q Consensus 371 ~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~l~ 420 (453)
+|||||+|.+.++|+||+|||||+|+.|.|++|+++.+...++.+.+.++
T Consensus 316 ~VI~~d~P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e~~~l~~ie~~~~ 365 (629)
T PRK11634 316 LVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMK 365 (629)
T ss_pred EEEEeCCCCCHHHHHHHhccccCCCCcceEEEEechHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999887777766655543
|
|
| >KOG0342|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-52 Score=390.05 Aligned_cols=304 Identities=32% Similarity=0.492 Sum_probs=268.2
Q ss_pred ccccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEE
Q psy9620 111 PITEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVL 190 (453)
Q Consensus 111 p~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vl 190 (453)
+...|++..|++..+++++++||..+|++|+.+++.++.|+|+++.|.||+|||++|++|+++.+...+.. +.++..||
T Consensus 80 ~~~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~-~r~~~~vl 158 (543)
T KOG0342|consen 80 TTFRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFK-PRNGTGVL 158 (543)
T ss_pred hhhHhhccccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccC-CCCCeeEE
Confidence 34578899999999999999999999999999999999999999999999999999999999998876543 33778899
Q ss_pred EEcCCHHHHHHHHHHHHHhcCCC-CceEEEEeCCccCCCC----------------------------------------
Q psy9620 191 VLAPTRELAQQIQEVARDFGSST-YLRSTCVYGGASKGPQ---------------------------------------- 229 (453)
Q Consensus 191 il~Ptr~La~q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~---------------------------------------- 229 (453)
|||||||||.|++.+++++.... .+.+..+.||......
T Consensus 159 Ii~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDE 238 (543)
T KOG0342|consen 159 IICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDE 238 (543)
T ss_pred EecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEeec
Confidence 99999999999999999998777 8889999998765432
Q ss_pred ---------------------CCceEEEEeccCcHHHHHHHHHhhcc-ceEEEeccccc-ccCccceeEEEEccccchhh
Q psy9620 230 ---------------------PDRQVLMWSATWPREVQKLAEDFLDS-YIQINIGSLTL-SANHNIQQVVEVCAEHEKEN 286 (453)
Q Consensus 230 ---------------------~~~q~v~~SAT~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~i~~~~~~~~~~~k~~ 286 (453)
..+|+++||||.++++++++...+.. ++.+.+..... ...+.+.|-+.+++...+..
T Consensus 239 ADrlLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~~f~ 318 (543)
T KOG0342|consen 239 ADRLLDIGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDSRFS 318 (543)
T ss_pred chhhhhcccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccccchHH
Confidence 67899999999999999999887764 77776554432 33455677777777766667
Q ss_pred hHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCC
Q psy9620 287 KLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDV 366 (453)
Q Consensus 287 ~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDi 366 (453)
.+..+|+.... ..++||||+|...+..+++.|....++|..+||.++|..|..+..+|+..+.-||||||+++||+|+
T Consensus 319 ll~~~LKk~~~--~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~ 396 (543)
T KOG0342|consen 319 LLYTFLKKNIK--RYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDI 396 (543)
T ss_pred HHHHHHHHhcC--CceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCC
Confidence 77777776432 3799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcCCChHHHHHHHH
Q psy9620 367 DDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDLID 417 (453)
Q Consensus 367 p~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~ 417 (453)
|+|++||+||+|.+.++|+||+||+||.|+.|.+++|+.+.+..+++.|.+
T Consensus 397 P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~El~Flr~LK~ 447 (543)
T KOG0342|consen 397 PDVDWVVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAPWELGFLRYLKK 447 (543)
T ss_pred CCceEEEEeCCCCCHHHHHHHhccccccCCCceEEEEeChhHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999888877764
|
|
| >KOG0343|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-51 Score=389.82 Aligned_cols=303 Identities=32% Similarity=0.501 Sum_probs=276.1
Q ss_pred CccccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEE
Q psy9620 110 NPITEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIV 189 (453)
Q Consensus 110 ~p~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~v 189 (453)
..+..|++++|+...++.|++.+|..+|.+|+++||..+.|+|+|..|.||||||++|++|+|+++... ++.+..|--|
T Consensus 66 ~~~~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~-kWs~~DGlGa 144 (758)
T KOG0343|consen 66 TTIKKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRL-KWSPTDGLGA 144 (758)
T ss_pred hhhhhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHc-CCCCCCCcee
Confidence 345689999999999999999999999999999999999999999999999999999999999998764 4566678889
Q ss_pred EEEcCCHHHHHHHHHHHHHhcCCCCceEEEEeCCccCCCC----------------------------------------
Q psy9620 190 LVLAPTRELAQQIQEVARDFGSSTYLRSTCVYGGASKGPQ---------------------------------------- 229 (453)
Q Consensus 190 lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~---------------------------------------- 229 (453)
|||+||||||.|+++.+.+.+....+.+..+.||......
T Consensus 145 lIISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEA 224 (758)
T KOG0343|consen 145 LIISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERISQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEA 224 (758)
T ss_pred EEecchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhhhcCCeEEechHHHHHHhhhcCCCCCCcceEEEeccH
Confidence 9999999999999999999999999999999999764432
Q ss_pred --------------------CCceEEEEeccCcHHHHHHHHHhhccceEEEecccc-cccCccceeEEEEccccchhhhH
Q psy9620 230 --------------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLT-LSANHNIQQVVEVCAEHEKENKL 288 (453)
Q Consensus 230 --------------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~k~~~l 288 (453)
..+|+++||||-...+.++++.-+.+|..+.+.... ...+.++.|.+..++..+|.+.|
T Consensus 225 DR~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l~~Ki~~L 304 (758)
T KOG0343|consen 225 DRMLDMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPLEDKIDML 304 (758)
T ss_pred HHHHHHhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEehhhHHHHH
Confidence 679999999999999999999999999988887433 56778899999999999999988
Q ss_pred HHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhc--CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCC
Q psy9620 289 FGLLNDISSKDENKTIIFAETKRKVDKITKSIQNY--GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDV 366 (453)
Q Consensus 289 ~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~--~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDi 366 (453)
..++.. +.+.++|||+.|++++..+++.++.. |+++..+||.|+|..|..++++|-..+.-||+|||+++||||+
T Consensus 305 ~sFI~s---hlk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDF 381 (758)
T KOG0343|consen 305 WSFIKS---HLKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDF 381 (758)
T ss_pred HHHHHh---ccccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCCC
Confidence 888775 45679999999999999999999975 8899999999999999999999999999999999999999999
Q ss_pred CCCcEEEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcCCCh-HHHHHHH
Q psy9620 367 DDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNS-RQAKDLI 416 (453)
Q Consensus 367 p~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~-~~~~~l~ 416 (453)
|.|++||++|.|.++++|+||+||++|....|.|++++++.+. .++..|.
T Consensus 382 paVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~psEeE~~l~~Lq 432 (758)
T KOG0343|consen 382 PAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLTPSEEEAMLKKLQ 432 (758)
T ss_pred cccceEEEecCchhHHHHHHHhhhhhcccCCCceEEEEcchhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999884 4444433
|
|
| >KOG0345|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-51 Score=380.15 Aligned_cols=296 Identities=33% Similarity=0.525 Sum_probs=259.4
Q ss_pred ccccccC--CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEE
Q psy9620 113 TEFAEAN--FPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVL 190 (453)
Q Consensus 113 ~~f~~~~--l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vl 190 (453)
..|++++ |.++|++++.+.||..+||+|..+||.++.++|+++.|+||||||+||++|++..+.......+....-+|
T Consensus 4 ~~~~~l~~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgal 83 (567)
T KOG0345|consen 4 KSFSSLAPPLSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGAL 83 (567)
T ss_pred cchhhcCCCccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEE
Confidence 3566664 55999999999999999999999999999999999999999999999999999998554333222345799
Q ss_pred EEcCCHHHHHHHHHHHHHhcCC-CCceEEEEeCCccCCCC----------------------------------------
Q psy9620 191 VLAPTRELAQQIQEVARDFGSS-TYLRSTCVYGGASKGPQ---------------------------------------- 229 (453)
Q Consensus 191 il~Ptr~La~q~~~~~~~~~~~-~~~~~~~~~gg~~~~~~---------------------------------------- 229 (453)
||+||||||.||.+.+..|... ..+.+.++.||.+....
T Consensus 84 IIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVL 163 (567)
T KOG0345|consen 84 IISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVL 163 (567)
T ss_pred EecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEe
Confidence 9999999999999999988765 67889999999665443
Q ss_pred -----------------------CCceEEEEeccCcHHHHHHHHHhhccceEEEecccccc-cCccceeEEEEccccchh
Q psy9620 230 -----------------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLS-ANHNIQQVVEVCAEHEKE 285 (453)
Q Consensus 230 -----------------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~k~ 285 (453)
..+.+=+||||...++.++....+.|++.+.+...... .+..+...+..+...+|.
T Consensus 164 DEADrLldmgFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~eK~ 243 (567)
T KOG0345|consen 164 DEADRLLDMGFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEADEKL 243 (567)
T ss_pred cchHhHhcccHHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEecHHHHH
Confidence 56788899999999999999999999999988776532 344567778888888898
Q ss_pred hhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhc--CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccC
Q psy9620 286 NKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNY--GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARG 363 (453)
Q Consensus 286 ~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~--~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~G 363 (453)
..++++|.. ....++|||++|...++..+..|... ...+..+||.|.+..|..+++.|+.-...+|+|||+++||
T Consensus 244 ~~lv~~L~~---~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARG 320 (567)
T KOG0345|consen 244 SQLVHLLNN---NKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARG 320 (567)
T ss_pred HHHHHHHhc---cccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhcc
Confidence 888888876 35679999999999999999998765 6788999999999999999999999889999999999999
Q ss_pred CCCCCCcEEEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcCCChHH
Q psy9620 364 LDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQ 411 (453)
Q Consensus 364 iDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~ 411 (453)
||||+|++||+||+|.+...|+||+|||+|+|..|.+++|+.+++..+
T Consensus 321 lDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~aY 368 (567)
T KOG0345|consen 321 LDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNPREEAY 368 (567)
T ss_pred CCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEEecccHHHH
Confidence 999999999999999999999999999999999999999999965443
|
|
| >PRK11192 ATP-dependent RNA helicase SrmB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-50 Score=404.01 Aligned_cols=304 Identities=33% Similarity=0.566 Sum_probs=259.7
Q ss_pred cccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEc
Q psy9620 114 EFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLA 193 (453)
Q Consensus 114 ~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~ 193 (453)
+|++++|++.+++.++++||..|+++|.++|+.+++++|++++||||+|||++|++|++.++...+.. ....+++|||+
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~-~~~~~~~lil~ 80 (434)
T PRK11192 2 TFSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRR-KSGPPRILILT 80 (434)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhcccc-CCCCceEEEEC
Confidence 69999999999999999999999999999999999999999999999999999999999988754321 22357899999
Q ss_pred CCHHHHHHHHHHHHHhcCCCCceEEEEeCCccCCCC--------------------------------------------
Q psy9620 194 PTRELAQQIQEVARDFGSSTYLRSTCVYGGASKGPQ-------------------------------------------- 229 (453)
Q Consensus 194 Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~-------------------------------------------- 229 (453)
||++||.|+.+.+..++...++++..++|+.....+
T Consensus 81 Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~~l 160 (434)
T PRK11192 81 PTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADRML 160 (434)
T ss_pred CcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHHHh
Confidence 999999999999999998888999999887643211
Q ss_pred ----------------CCceEEEEeccCcH-HHHHHHHHhhccceEEEecccccccCccceeEEEEccc-cchhhhHHHH
Q psy9620 230 ----------------PDRQVLMWSATWPR-EVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAE-HEKENKLFGL 291 (453)
Q Consensus 230 ----------------~~~q~v~~SAT~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~k~~~l~~l 291 (453)
...|+++||||++. .+..+...++.+++.+...... .....+.+.+..... ..+...+..+
T Consensus 161 ~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~i~~~~~~~~~~~~k~~~l~~l 239 (434)
T PRK11192 161 DMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSR-RERKKIHQWYYRADDLEHKTALLCHL 239 (434)
T ss_pred CCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCc-ccccCceEEEEEeCCHHHHHHHHHHH
Confidence 34789999999985 4778888888888877665433 333456665555443 3344444444
Q ss_pred HHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcE
Q psy9620 292 LNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKF 371 (453)
Q Consensus 292 l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~ 371 (453)
+.. ....++||||+++..|+.++..|...++.+..+||+|++.+|..+++.|++|+++|||||+++++|||+|+|++
T Consensus 240 ~~~---~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~ 316 (434)
T PRK11192 240 LKQ---PEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSH 316 (434)
T ss_pred Hhc---CCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCE
Confidence 432 24579999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcCCChHHHHHHHHHHHhc
Q psy9620 372 VINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDLIDVLTES 422 (453)
Q Consensus 372 VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~ 422 (453)
|||||+|.+.+.|+||+||+||+|..|.+++|++..+...+..+.+++...
T Consensus 317 VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~~~~~~i~~~~~~~ 367 (434)
T PRK11192 317 VINFDMPRSADTYLHRIGRTGRAGRKGTAISLVEAHDHLLLGKIERYIEEP 367 (434)
T ss_pred EEEECCCCCHHHHhhcccccccCCCCceEEEEecHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999988888887766543
|
|
| >PRK01297 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-50 Score=405.51 Aligned_cols=318 Identities=32% Similarity=0.493 Sum_probs=270.9
Q ss_pred ccccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCC--CCCCcE
Q psy9620 111 PITEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLK--PGDGPI 188 (453)
Q Consensus 111 p~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~--~~~~~~ 188 (453)
....|.+++|++.+.+.|.++||..|+++|.++|+.+++|+|+|+++|||||||++|++|++..+...+... ....++
T Consensus 85 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~ 164 (475)
T PRK01297 85 GKTRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPR 164 (475)
T ss_pred CCCCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCce
Confidence 346789999999999999999999999999999999999999999999999999999999999887653211 112578
Q ss_pred EEEEcCCHHHHHHHHHHHHHhcCCCCceEEEEeCCccCCCC---------------------------------------
Q psy9620 189 VLVLAPTRELAQQIQEVARDFGSSTYLRSTCVYGGASKGPQ--------------------------------------- 229 (453)
Q Consensus 189 vlil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~--------------------------------------- 229 (453)
+|||+||++||.|+.+.++.+....++++..++|+.+...+
T Consensus 165 aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViD 244 (475)
T PRK01297 165 ALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLD 244 (475)
T ss_pred EEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEec
Confidence 99999999999999999999988888999998887543211
Q ss_pred ------------------------CCceEEEEeccCcHHHHHHHHHhhccceEEEecccccccCccceeEEEEccccchh
Q psy9620 230 ------------------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKE 285 (453)
Q Consensus 230 ------------------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~ 285 (453)
..+|++++|||++.++..++..++.++..+.+.... .....+.+.+..+...++.
T Consensus 245 Eah~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~k~ 323 (475)
T PRK01297 245 EADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPEN-VASDTVEQHVYAVAGSDKY 323 (475)
T ss_pred hHHHHHhcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCc-CCCCcccEEEEEecchhHH
Confidence 257999999999999999999999888777665443 2334556666666666666
Q ss_pred hhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCC
Q psy9620 286 NKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLD 365 (453)
Q Consensus 286 ~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiD 365 (453)
..+..++.. ....++||||+++..|+.+++.|...++.+..+||++++.+|..+++.|++|+++|||||+++++|||
T Consensus 324 ~~l~~ll~~---~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GID 400 (475)
T PRK01297 324 KLLYNLVTQ---NPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIH 400 (475)
T ss_pred HHHHHHHHh---cCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCc
Confidence 666665543 23468999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcCCChHHHHHHHHHHHhcC--CCCChHHHH
Q psy9620 366 VDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDLIDVLTESN--HPVDPKLSA 432 (453)
Q Consensus 366 ip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~--~~v~~~l~~ 432 (453)
||++++||+||+|.+..+|+||+||+||.|.+|.+++|++++|...+..+.+++.... ...+.+|..
T Consensus 401 i~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (475)
T PRK01297 401 IDGISHVINFTLPEDPDDYVHRIGRTGRAGASGVSISFAGEDDAFQLPEIEELLGRKISCEMPPAELLK 469 (475)
T ss_pred ccCCCEEEEeCCCCCHHHHHHhhCccCCCCCCceEEEEecHHHHHHHHHHHHHhCCCCcccCCcHHHhh
Confidence 9999999999999999999999999999999999999999998888888887776553 334445544
|
|
| >KOG0344|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-50 Score=384.86 Aligned_cols=337 Identities=33% Similarity=0.545 Sum_probs=288.3
Q ss_pred HHHHHcCCeeccc-CCCcccccccc----CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhH
Q psy9620 95 AFRDKHQMTLKGN-APNPITEFAEA----NFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYML 169 (453)
Q Consensus 95 ~~~~~~~~~~~~~-~p~p~~~f~~~----~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l 169 (453)
..+..+.+.+.|. .|+|+.+|+++ ...+.+++++.+.+|..|+|+|.+|+|.+++++|+++|||||+|||++|.+
T Consensus 113 ~~Rk~~k~~v~G~~~~~~l~~f~~lt~~~~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~ 192 (593)
T KOG0344|consen 113 GIRKSNKINVDGFHLPPPLLSFSDLTYDYSMNKRLLENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNL 192 (593)
T ss_pred cchhcceeeccCCCCCCccccccccchhhhhcHHHHHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhh
Confidence 3455567788888 79999999984 578999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhc--CCCCceEEEEeCCccCCCC------------------
Q psy9620 170 PAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFG--SSTYLRSTCVYGGASKGPQ------------------ 229 (453)
Q Consensus 170 ~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~--~~~~~~~~~~~gg~~~~~~------------------ 229 (453)
|++.++..........+-+++|+.||++||.|++.++.++. .....++............
T Consensus 193 Pil~~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~r 272 (593)
T KOG0344|consen 193 PILQHLKDLSQEKHKVGLRALILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMR 272 (593)
T ss_pred HHHHHHHHhhcccCccceEEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHH
Confidence 99999987664444567899999999999999999999998 4444443332222111000
Q ss_pred -----------------------------------------------CCceEEEEeccCcHHHHHHHHHhhccceEEEec
Q psy9620 230 -----------------------------------------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIG 262 (453)
Q Consensus 230 -----------------------------------------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~ 262 (453)
++..+-+||||++..++++++....+.+.+.++
T Consensus 273 i~~~~~~~~~~idl~~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg 352 (593)
T KOG0344|consen 273 IVGLLGLGKLNIDLSKVEWLVVDEADLLFEPEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSDLKRVIVG 352 (593)
T ss_pred HHHHhcCCCccchhheeeeEeechHHhhhChhhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhccceeEEEe
Confidence 566778999999999999999999999988887
Q ss_pred ccccccCccceeEEEEcc-ccchhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHH-HhcCCeEEEEcCCCCHHHHH
Q psy9620 263 SLTLSANHNIQQVVEVCA-EHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSI-QNYGWAAVGIHGDKSQQERD 340 (453)
Q Consensus 263 ~~~~~~~~~i~~~~~~~~-~~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L-~~~~~~~~~~h~~~~~~~r~ 340 (453)
... +....+.|...++- +..|.-.+.+++. ..-..++|||+.+.+.|.+|...| .-.++++.++||..++.+|+
T Consensus 353 ~~~-sa~~~V~QelvF~gse~~K~lA~rq~v~---~g~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrd 428 (593)
T KOG0344|consen 353 LRN-SANETVDQELVFCGSEKGKLLALRQLVA---SGFKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRD 428 (593)
T ss_pred cch-hHhhhhhhhheeeecchhHHHHHHHHHh---ccCCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHH
Confidence 765 34556666655554 3344444444444 345679999999999999999999 66789999999999999999
Q ss_pred HHHHHHhcCCCcEEEEeccCccCCCCCCCcEEEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcCCChHHHHHHHHHHH
Q psy9620 341 YVLKEFRNGRAGILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDLIDVLT 420 (453)
Q Consensus 341 ~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~l~ 420 (453)
.++++|+.|++.|||||++++||||+.+|+.|||||+|.+...|+||+||+||+|+.|.+|+||++.+....+.+.+.++
T Consensus 429 e~~~~FR~g~IwvLicTdll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitfytd~d~~~ir~iae~~~ 508 (593)
T KOG0344|consen 429 ETMERFRIGKIWVLICTDLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFYTDQDMPRIRSIAEVME 508 (593)
T ss_pred HHHHHHhccCeeEEEehhhhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEEeccccchhhhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCChHHHHHHh
Q psy9620 421 ESNHPVDPKLSALAS 435 (453)
Q Consensus 421 ~~~~~v~~~l~~~~~ 435 (453)
..+.+||+++..|..
T Consensus 509 ~sG~evpe~~m~~~k 523 (593)
T KOG0344|consen 509 QSGCEVPEKIMGIKK 523 (593)
T ss_pred HcCCcchHHHHhhhh
Confidence 999999999999875
|
|
| >KOG0348|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-50 Score=377.56 Aligned_cols=310 Identities=30% Similarity=0.464 Sum_probs=261.3
Q ss_pred CCCccccccccCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhc-CCCCCCC
Q psy9620 108 APNPITEFAEANFPDYVLKEVKR-QGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQ-SQLKPGD 185 (453)
Q Consensus 108 ~p~p~~~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~-~~~~~~~ 185 (453)
.|-.-..|..++|++.+.+.|+. +++..||.+|+++||.+++|+|++|.++||||||++|++|+++.+... ++..+.+
T Consensus 131 ~~fts~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~ 210 (708)
T KOG0348|consen 131 APFTSAAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSD 210 (708)
T ss_pred cccccccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccC
Confidence 34444679999999999999985 599999999999999999999999999999999999999999998764 4556678
Q ss_pred CcEEEEEcCCHHHHHHHHHHHHHhcCCC-CceEEEEeCCccCCCC-----------------------------------
Q psy9620 186 GPIVLVLAPTRELAQQIQEVARDFGSST-YLRSTCVYGGASKGPQ----------------------------------- 229 (453)
Q Consensus 186 ~~~vlil~Ptr~La~q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~----------------------------------- 229 (453)
|+.+|||+||||||.|+++.+.++.+.. .|-...+.||..+...
T Consensus 211 G~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRw 290 (708)
T KOG0348|consen 211 GPYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRW 290 (708)
T ss_pred CceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeE
Confidence 9999999999999999999999997654 4455667777765543
Q ss_pred ---------------------------------------CCceEEEEeccCcHHHHHHHHHhhccceEEEecccc-----
Q psy9620 230 ---------------------------------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLT----- 265 (453)
Q Consensus 230 ---------------------------------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~----- 265 (453)
+..|.+++|||+...+..++..-++|++.+..+...
T Consensus 291 lVlDEaDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p 370 (708)
T KOG0348|consen 291 LVLDEADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLNP 370 (708)
T ss_pred EEecchhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcCc
Confidence 247899999999999999999999999887722211
Q ss_pred -------------------cccCccceeEEEEccccchhhhHHHHHHhhhc-CCCCcEEEEEcchhHHHHHHHHHHhc--
Q psy9620 266 -------------------LSANHNIQQVVEVCAEHEKENKLFGLLNDISS-KDENKTIIFAETKRKVDKITKSIQNY-- 323 (453)
Q Consensus 266 -------------------~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~-~~~~~~lVF~~s~~~~~~l~~~L~~~-- 323 (453)
...+..+.|.+.+++.......|..+|..... ....++|||+.+.+.++.-+..|...
T Consensus 371 ~~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~ 450 (708)
T KOG0348|consen 371 KDKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALL 450 (708)
T ss_pred chhhhhhcCCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhh
Confidence 12234456667777777777777777765533 34558999999999999988887642
Q ss_pred --------------------CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEEEcCCCCChhH
Q psy9620 324 --------------------GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVINFDYPNNSED 383 (453)
Q Consensus 324 --------------------~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~ 383 (453)
+..+..+||+|+|++|..++..|...+..||+|||+++||||+|+|.+||+||.|.+.++
T Consensus 451 ~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~ad 530 (708)
T KOG0348|consen 451 SHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDPPFSTAD 530 (708)
T ss_pred cccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeCCCCCHHH
Confidence 345778999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcccCCCCcceEEEEEcCCChHHHHHHHH
Q psy9620 384 YIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDLID 417 (453)
Q Consensus 384 y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~ 417 (453)
|+||+||++|+|..|.+++|+.+.+.+++..+..
T Consensus 531 ylHRvGRTARaG~kG~alLfL~P~Eaey~~~l~~ 564 (708)
T KOG0348|consen 531 YLHRVGRTARAGEKGEALLFLLPSEAEYVNYLKK 564 (708)
T ss_pred HHHHhhhhhhccCCCceEEEecccHHHHHHHHHh
Confidence 9999999999999999999999999886665544
|
|
| >KOG0346|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-50 Score=371.60 Aligned_cols=307 Identities=29% Similarity=0.491 Sum_probs=266.6
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCC-CCCCCcEEEE
Q psy9620 113 TEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQL-KPGDGPIVLV 191 (453)
Q Consensus 113 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~-~~~~~~~vli 191 (453)
.+|++++|++.|++++.+.||..||-+|+.|||.+++|+|+++.|.||||||.+|++|+++.+...... ....+|.++|
T Consensus 19 ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~i 98 (569)
T KOG0346|consen 19 KTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVI 98 (569)
T ss_pred ccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEE
Confidence 589999999999999999999999999999999999999999999999999999999999999887655 3456899999
Q ss_pred EcCCHHHHHHHHHHHHHhcCCC--CceEEEEeCCccCCCC----------------------------------------
Q psy9620 192 LAPTRELAQQIQEVARDFGSST--YLRSTCVYGGASKGPQ---------------------------------------- 229 (453)
Q Consensus 192 l~Ptr~La~q~~~~~~~~~~~~--~~~~~~~~gg~~~~~~---------------------------------------- 229 (453)
|+||+|||+|++..+.++.... .+++.-+....+....
T Consensus 99 LvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDE 178 (569)
T KOG0346|consen 99 LVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDE 178 (569)
T ss_pred EechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEech
Confidence 9999999999999888763211 2232222221111100
Q ss_pred ---------------------CCceEEEEeccCcHHHHHHHHHhhccceEEEecccccccCccceeEEEEccccchhhhH
Q psy9620 230 ---------------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKL 288 (453)
Q Consensus 230 ---------------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l 288 (453)
+..|.++||||+..++..+-+.++.+|+.+.....+......+.|++..|.+.+|...+
T Consensus 179 ADLllsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cse~DKflll 258 (569)
T KOG0346|consen 179 ADLLLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCSEEDKFLLL 258 (569)
T ss_pred hhhhhhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEeccchhHHHH
Confidence 67899999999999999999999999999999888888888999999999998888887
Q ss_pred HHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecc---------
Q psy9620 289 FGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDV--------- 359 (453)
Q Consensus 289 ~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~--------- 359 (453)
..+++.- --.+++|||+||.+.|.+|.-+|...|+...++++.|+..-|..++++|..|-.+||||||.
T Consensus 259 yallKL~--LI~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~ee 336 (569)
T KOG0346|consen 259 YALLKLR--LIRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEE 336 (569)
T ss_pred HHHHHHH--HhcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhc
Confidence 7777642 23679999999999999999999999999999999999999999999999999999999991
Q ss_pred --------------------------CccCCCCCCCcEEEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcCCChHHHH
Q psy9620 360 --------------------------AARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAK 413 (453)
Q Consensus 360 --------------------------~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~ 413 (453)
++||||+.+|..|||||+|.+...|+||+||++|++++|.+++|+.+.+..-..
T Consensus 337 e~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSfv~P~e~~g~~ 416 (569)
T KOG0346|consen 337 EVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSFVSPKEEFGKE 416 (569)
T ss_pred cccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEEEecchHHhhhh
Confidence 579999999999999999999999999999999999999999999998766444
Q ss_pred HHHHHHHh
Q psy9620 414 DLIDVLTE 421 (453)
Q Consensus 414 ~l~~~l~~ 421 (453)
.+..+++.
T Consensus 417 ~le~~~~d 424 (569)
T KOG0346|consen 417 SLESILKD 424 (569)
T ss_pred HHHHHHhh
Confidence 44445444
|
|
| >KOG0332|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-49 Score=356.82 Aligned_cols=316 Identities=28% Similarity=0.468 Sum_probs=270.6
Q ss_pred CccccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhc--CCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCc
Q psy9620 110 NPITEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMS--GSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGP 187 (453)
Q Consensus 110 ~p~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~--g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~ 187 (453)
..+.+|+++.|.|++++.+..++|.+|+.+|..|+|.++. -+++|.+++.|+|||.||.+.+|.++.... ..|
T Consensus 87 yS~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~-----~~P 161 (477)
T KOG0332|consen 87 YSAKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDV-----VVP 161 (477)
T ss_pred cccccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCccc-----cCC
Confidence 3568999999999999999999999999999999999996 489999999999999999999999876543 467
Q ss_pred EEEEEcCCHHHHHHHHHHHHHhcCCCCceEEEEeCCccCC--C----C--------------------------------
Q psy9620 188 IVLVLAPTRELAQQIQEVARDFGSSTYLRSTCVYGGASKG--P----Q-------------------------------- 229 (453)
Q Consensus 188 ~vlil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~--~----~-------------------------------- 229 (453)
.+++|+||||||.|+.+.+.+.++..++.+..+.-+.... . +
T Consensus 162 Q~iCLaPtrELA~Q~~eVv~eMGKf~~ita~yair~sk~~rG~~i~eqIviGTPGtv~Dlm~klk~id~~kikvfVlDEA 241 (477)
T KOG0332|consen 162 QCICLAPTRELAPQTGEVVEEMGKFTELTASYAIRGSKAKRGNKLTEQIVIGTPGTVLDLMLKLKCIDLEKIKVFVLDEA 241 (477)
T ss_pred CceeeCchHHHHHHHHHHHHHhcCceeeeEEEEecCcccccCCcchhheeeCCCccHHHHHHHHHhhChhhceEEEecch
Confidence 8999999999999999999999988877766655443111 0 0
Q ss_pred ---------------------CCceEEEEeccCcHHHHHHHHHhhccceEEEecccccccCccceeEEEEccc-cchhhh
Q psy9620 230 ---------------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAE-HEKENK 287 (453)
Q Consensus 230 ---------------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~k~~~ 287 (453)
.+.|+++||||+...+..++..+..++..+.+...++.. .+|+|++..|.. .+|.+.
T Consensus 242 D~Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L-~~IkQlyv~C~~~~~K~~~ 320 (477)
T KOG0332|consen 242 DVMIDTQGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKREELAL-DNIKQLYVLCACRDDKYQA 320 (477)
T ss_pred hhhhhcccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhccc-cchhhheeeccchhhHHHH
Confidence 489999999999999999999999999888888877544 678888888864 456666
Q ss_pred HHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCC
Q psy9620 288 LFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVD 367 (453)
Q Consensus 288 l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip 367 (453)
|.++...+ .-+..||||.|++.|..|+..|...|+.|..+||+|...+|..++++|+.|..+|||+|++++||||++
T Consensus 321 l~~lyg~~---tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~ 397 (477)
T KOG0332|consen 321 LVNLYGLL---TIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDVA 397 (477)
T ss_pred HHHHHhhh---hhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhcccccc
Confidence 66654433 356899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEcCCCC------ChhHHHHhhhcccCCCCcceEEEEEcCCC-hHHHHHHHHHHHhc-CCCCChHHHHHH
Q psy9620 368 DVKFVINFDYPN------NSEDYIHRIGRTGRSDNTGTSYTFFTQQN-SRQAKDLIDVLTES-NHPVDPKLSALA 434 (453)
Q Consensus 368 ~v~~VI~~d~p~------s~~~y~qr~GRagR~g~~g~~~~~~~~~~-~~~~~~l~~~l~~~-~~~v~~~l~~~~ 434 (453)
.|++|||||+|. +.+.|+||+||+||.|+.|.++.|++..+ .+.+..+.++++.. ..-.|+.++++.
T Consensus 398 qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~~mn~iq~~F~~~i~~~~~~d~~E~e 472 (477)
T KOG0332|consen 398 QVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDSMNIMNKIQKHFNMKIKRLDPDDLDELE 472 (477)
T ss_pred eEEEEEecCCccccCCCCCHHHHHHHhcccccccccceEEEeecccCcHHHHHHHHHHHhhcceecCCccHHHHH
Confidence 999999999994 68899999999999999999999998754 56677788877543 444555555553
|
|
| >PTZ00424 helicase 45; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-48 Score=386.56 Aligned_cols=308 Identities=33% Similarity=0.556 Sum_probs=257.1
Q ss_pred cccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEE
Q psy9620 112 ITEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLV 191 (453)
Q Consensus 112 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vli 191 (453)
..+|+++++++.+.+++.+.||..|+|+|.++|+.+++++|++++||||||||++|++|++..+... ..++++||
T Consensus 27 ~~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~-----~~~~~~li 101 (401)
T PTZ00424 27 VDSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYD-----LNACQALI 101 (401)
T ss_pred cCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCC-----CCCceEEE
Confidence 5789999999999999999999999999999999999999999999999999999999999877532 14678999
Q ss_pred EcCCHHHHHHHHHHHHHhcCCCCceEEEEeCCccCCC---------C---------------------------------
Q psy9620 192 LAPTRELAQQIQEVARDFGSSTYLRSTCVYGGASKGP---------Q--------------------------------- 229 (453)
Q Consensus 192 l~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~---------~--------------------------------- 229 (453)
|+||++|+.|+.+.+..++....+.+..+.|+..... .
T Consensus 102 l~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah~ 181 (401)
T PTZ00424 102 LAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADE 181 (401)
T ss_pred ECCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHHH
Confidence 9999999999999999988777677666666542110 0
Q ss_pred ------------------CCceEEEEeccCcHHHHHHHHHhhccceEEEecccccccCccceeEEEEccc-cchhhhHHH
Q psy9620 230 ------------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAE-HEKENKLFG 290 (453)
Q Consensus 230 ------------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~k~~~l~~ 290 (453)
+..|++++|||+|.++..+...++.++..+.+..... ....+.+.+..... ..+...+..
T Consensus 182 ~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~ 260 (401)
T PTZ00424 182 MLSRGFKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKDEL-TLEGIRQFYVAVEKEEWKFDTLCD 260 (401)
T ss_pred HHhcchHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCc-ccCCceEEEEecChHHHHHHHHHH
Confidence 5679999999999999988888888876665544332 22344444444432 223333444
Q ss_pred HHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCc
Q psy9620 291 LLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVK 370 (453)
Q Consensus 291 ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~ 370 (453)
++.. ....++||||+++..++.+++.|...++.+..+|++|++.+|..+++.|++|+++|||||+++++|||+|+++
T Consensus 261 ~~~~---~~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~ 337 (401)
T PTZ00424 261 LYET---LTITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVS 337 (401)
T ss_pred HHHh---cCCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCC
Confidence 4332 2356899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcCCChHHHHHHHHHHHhcCCCCCh
Q psy9620 371 FVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDLIDVLTESNHPVDP 428 (453)
Q Consensus 371 ~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~v~~ 428 (453)
+||++|+|.+..+|+||+||+||.|..|.|++|+++++...++.+.+.+....++.+.
T Consensus 338 ~VI~~~~p~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~~~~~~e~~~~~~~~~~~~ 395 (401)
T PTZ00424 338 LVINYDLPASPENYIHRIGRSGRFGRKGVAINFVTPDDIEQLKEIERHYNTQIEEMPM 395 (401)
T ss_pred EEEEECCCCCHHHEeecccccccCCCCceEEEEEcHHHHHHHHHHHHHHCCcccccCc
Confidence 9999999999999999999999999999999999999988888887777665555543
|
|
| >KOG0347|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-50 Score=378.19 Aligned_cols=311 Identities=31% Similarity=0.489 Sum_probs=258.5
Q ss_pred CCCccccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcC-CcEEEEecCCCcchhhhhHHHHHHhhhcCCC-----
Q psy9620 108 APNPITEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSG-SNMVGVAQTGSGKTLAYMLPAIVHINHQSQL----- 181 (453)
Q Consensus 108 ~p~p~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g-~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~----- 181 (453)
-+..+..|.++.||..++++|.++||..||++|+.++|.+..| .|+|..|.||||||++|-||+++.+.+....
T Consensus 176 ~~~DvsAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~ 255 (731)
T KOG0347|consen 176 SKVDVSAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELS 255 (731)
T ss_pred cccChHHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhh
Confidence 3456678999999999999999999999999999999999988 7999999999999999999999855432211
Q ss_pred ---CCCCCcEEEEEcCCHHHHHHHHHHHHHhcCCCCceEEEEeCCccCCCC-----------------------------
Q psy9620 182 ---KPGDGPIVLVLAPTRELAQQIQEVARDFGSSTYLRSTCVYGGASKGPQ----------------------------- 229 (453)
Q Consensus 182 ---~~~~~~~vlil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~----------------------------- 229 (453)
.....|.+||++||||||.|+.+.+..++...++++..++||.....|
T Consensus 256 ~~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l 335 (731)
T KOG0347|consen 256 NTSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHL 335 (731)
T ss_pred hHHhccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhh
Confidence 112345699999999999999999999999999999999999765443
Q ss_pred ---------------------------------------CCceEEEEeccCcHHHH---------------------HHH
Q psy9620 230 ---------------------------------------PDRQVLMWSATWPREVQ---------------------KLA 249 (453)
Q Consensus 230 ---------------------------------------~~~q~v~~SAT~~~~~~---------------------~~~ 249 (453)
..+|++.||||+.-... .+.
T Consensus 336 ~~~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lm 415 (731)
T KOG0347|consen 336 GNFKKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLM 415 (731)
T ss_pred hhhhhceEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHH
Confidence 67899999999862211 111
Q ss_pred HHh--hccceEEEecccccccCccceeEEEEccccchhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeE
Q psy9620 250 EDF--LDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAA 327 (453)
Q Consensus 250 ~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~ 327 (453)
+.. ..++..+.+.+.. .....+......|+..+|...|..+|..+ .+++|||||+++.+.+|+-+|...+++.
T Consensus 416 k~ig~~~kpkiiD~t~q~-~ta~~l~Es~I~C~~~eKD~ylyYfl~ry----PGrTlVF~NsId~vKRLt~~L~~L~i~p 490 (731)
T KOG0347|consen 416 KKIGFRGKPKIIDLTPQS-ATASTLTESLIECPPLEKDLYLYYFLTRY----PGRTLVFCNSIDCVKRLTVLLNNLDIPP 490 (731)
T ss_pred HHhCccCCCeeEecCcch-hHHHHHHHHhhcCCccccceeEEEEEeec----CCceEEEechHHHHHHHHHHHhhcCCCC
Confidence 111 1233333333322 23344444455566666666666665443 6899999999999999999999999999
Q ss_pred EEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcCC
Q psy9620 328 VGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQ 407 (453)
Q Consensus 328 ~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~ 407 (453)
..+|+.|.|.+|...+++|++....||||||+++||||||.|.|||||-.|.+.+.|+||.||++|++..|..++|+.+.
T Consensus 491 ~~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~Gvsvml~~P~ 570 (731)
T KOG0347|consen 491 LPLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEGVSVMLCGPQ 570 (731)
T ss_pred chhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccCCCeEEEEeChH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhcC
Q psy9620 408 NSRQAKDLIDVLTESN 423 (453)
Q Consensus 408 ~~~~~~~l~~~l~~~~ 423 (453)
+...+++|+.-|+...
T Consensus 571 e~~~~~KL~ktL~k~~ 586 (731)
T KOG0347|consen 571 EVGPLKKLCKTLKKKE 586 (731)
T ss_pred HhHHHHHHHHHHhhcc
Confidence 9999999998887654
|
|
| >KOG0327|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-47 Score=349.19 Aligned_cols=311 Identities=33% Similarity=0.590 Sum_probs=282.2
Q ss_pred cccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEE
Q psy9620 112 ITEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLV 191 (453)
Q Consensus 112 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vli 191 (453)
+.+|++++|++.|++.+...||.+|+.+|+.||..+..|.|+++++++|+|||.+|.+++++.+.-. .....||+
T Consensus 25 vdsfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~-----~ke~qali 99 (397)
T KOG0327|consen 25 VDSFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMS-----VKETQALI 99 (397)
T ss_pred hhhhhhcCCCHHHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCcc-----hHHHHHHH
Confidence 3589999999999999999999999999999999999999999999999999999999999987432 23556999
Q ss_pred EcCCHHHHHHHHHHHHHhcCCCCceEEEEeCCccCCCC------------------------------------------
Q psy9620 192 LAPTRELAQQIQEVARDFGSSTYLRSTCVYGGASKGPQ------------------------------------------ 229 (453)
Q Consensus 192 l~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~------------------------------------------ 229 (453)
++|||+||.|+.+....++...+.++..+.|+.....+
T Consensus 100 laPtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaD 179 (397)
T KOG0327|consen 100 LAPTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEAD 179 (397)
T ss_pred hcchHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccccccccceeEEeecchH
Confidence 99999999999999999999999999888887665422
Q ss_pred -------------------CCceEEEEeccCcHHHHHHHHHhhccceEEEecccccccCccceeEEEEccccchhhhHHH
Q psy9620 230 -------------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFG 290 (453)
Q Consensus 230 -------------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ 290 (453)
.+.|++++|||.|.++..+.+.++.+++.+.+...+++ ...++|++..+...+|...|..
T Consensus 180 EmLs~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~lt-l~gikq~~i~v~k~~k~~~l~d 258 (397)
T KOG0327|consen 180 EMLSRGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDELT-LEGIKQFYINVEKEEKLDTLCD 258 (397)
T ss_pred hhhccchHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEecchhhh-hhheeeeeeeccccccccHHHH
Confidence 67899999999999999999999999999998887755 4667788877777777777777
Q ss_pred HHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCc
Q psy9620 291 LLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVK 370 (453)
Q Consensus 291 ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~ 370 (453)
+.+ .....+||||+++.++.+...|...++.+..+|++|.+.+|+.+++.|+.|..+|||.|+.++||||+..+.
T Consensus 259 l~~-----~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~s 333 (397)
T KOG0327|consen 259 LYR-----RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVS 333 (397)
T ss_pred HHH-----hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhcc
Confidence 766 245789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcCCChHHHHHHHHHHHhcCCCCChHHHHH
Q psy9620 371 FVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDLIDVLTESNHPVDPKLSAL 433 (453)
Q Consensus 371 ~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~v~~~l~~~ 433 (453)
.||+||+|...++|+||+||+||.|.+|.++.|+++.+.+.++++.+++.-.-+++|....++
T Consensus 334 lvinydlP~~~~~yihR~gr~gr~grkg~~in~v~~~d~~~lk~ie~~y~~~i~e~p~~~~~l 396 (397)
T KOG0327|consen 334 LVVNYDLPARKENYIHRIGRAGRFGRKGVAINFVTEEDVRDLKDIEKFYNTPIEELPSNFADL 396 (397)
T ss_pred eeeeeccccchhhhhhhcccccccCCCceeeeeehHhhHHHHHhHHHhcCCcceecccchhhc
Confidence 999999999999999999999999999999999999999999999999888888888766543
|
|
| >TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-45 Score=382.24 Aligned_cols=290 Identities=18% Similarity=0.245 Sum_probs=226.3
Q ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHH
Q psy9620 119 NFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTREL 198 (453)
Q Consensus 119 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~L 198 (453)
.+++.+.+.|++.||.+|+++|+++|+.+++|+|+++++|||||||++|++|++..+... .++++|||+||+||
T Consensus 20 ~l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~------~~~~aL~l~PtraL 93 (742)
T TIGR03817 20 WAHPDVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADD------PRATALYLAPTKAL 93 (742)
T ss_pred cCCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhC------CCcEEEEEcChHHH
Confidence 488999999999999999999999999999999999999999999999999999988653 35789999999999
Q ss_pred HHHHHHHHHHhcCCCCceEEEEeCCccCCCC-------------------------------------------------
Q psy9620 199 AQQIQEVARDFGSSTYLRSTCVYGGASKGPQ------------------------------------------------- 229 (453)
Q Consensus 199 a~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~------------------------------------------------- 229 (453)
|.|+.+.+++++ ..++++..+.|+.+...+
T Consensus 94 a~q~~~~l~~l~-~~~i~v~~~~Gdt~~~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g~ 172 (742)
T TIGR03817 94 AADQLRAVRELT-LRGVRPATYDGDTPTEERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRGV 172 (742)
T ss_pred HHHHHHHHHHhc-cCCeEEEEEeCCCCHHHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccCc
Confidence 999999999987 446777777776542110
Q ss_pred --------------------CCceEEEEeccCcHHHHHHHHHhhccceEEEecccccccCccceeEEEEccc--------
Q psy9620 230 --------------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAE-------- 281 (453)
Q Consensus 230 --------------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-------- 281 (453)
.++|++++|||++...+ +++.++..++.+ +...... ....+...+...
T Consensus 173 fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~-~~~~l~g~~~~~-i~~~~~~--~~~~~~~~~~p~~~~~~~~~ 248 (742)
T TIGR03817 173 FGSHVALVLRRLRRLCARYGASPVFVLASATTADPAA-AASRLIGAPVVA-VTEDGSP--RGARTVALWEPPLTELTGEN 248 (742)
T ss_pred cHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHH-HHHHHcCCCeEE-ECCCCCC--cCceEEEEecCCcccccccc
Confidence 34799999999987654 566777666543 2221111 111122111111
Q ss_pred -----cchhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhc--------CCeEEEEcCCCCHHHHHHHHHHHhc
Q psy9620 282 -----HEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNY--------GWAAVGIHGDKSQQERDYVLKEFRN 348 (453)
Q Consensus 282 -----~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~--------~~~~~~~h~~~~~~~r~~~~~~f~~ 348 (453)
.........++..+.. ...++||||+|++.|+.++..|... +..+..+|+++++++|..++++|++
T Consensus 249 ~~~~r~~~~~~~~~~l~~l~~-~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~ 327 (742)
T TIGR03817 249 GAPVRRSASAEAADLLADLVA-EGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRD 327 (742)
T ss_pred ccccccchHHHHHHHHHHHHH-CCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHHc
Confidence 0001122233333322 2569999999999999999998763 5678899999999999999999999
Q ss_pred CCCcEEEEeccCccCCCCCCCcEEEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcCC--ChHHHHHHHHHHH
Q psy9620 349 GRAGILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQ--NSRQAKDLIDVLT 420 (453)
Q Consensus 349 g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~--~~~~~~~l~~~l~ 420 (453)
|++++||||+++++||||+++++||+||+|.+.++|+||+|||||.|+.|.++++.+++ |...+....++++
T Consensus 328 G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~~~~~~d~~~~~~~~~~~~ 401 (742)
T TIGR03817 328 GELLGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVVLVARDDPLDTYLVHHPEALFD 401 (742)
T ss_pred CCceEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEEEEeCCChHHHHHHhCHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999998743 3333443333443
|
A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA. |
| >KOG0337|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-44 Score=332.54 Aligned_cols=303 Identities=33% Similarity=0.547 Sum_probs=276.3
Q ss_pred cccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEE
Q psy9620 112 ITEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLV 191 (453)
Q Consensus 112 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vli 191 (453)
.-.|..++|+..+++++.+.||..|||+|++++|.+++++|++..+.||||||.||++|+++++.... ..+.++|+
T Consensus 20 ~g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s----~~g~Rali 95 (529)
T KOG0337|consen 20 SGGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHS----QTGLRALI 95 (529)
T ss_pred CCCccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhcc----ccccceee
Confidence 45799999999999999999999999999999999999999999999999999999999999998754 25788999
Q ss_pred EcCCHHHHHHHHHHHHHhcCCCCceEEEEeCCccCCCC------------------------------------------
Q psy9620 192 LAPTRELAQQIQEVARDFGSSTYLRSTCVYGGASKGPQ------------------------------------------ 229 (453)
Q Consensus 192 l~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~------------------------------------------ 229 (453)
++||++|+.|..+.+++++...++++.+++|+....++
T Consensus 96 lsptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEadr 175 (529)
T KOG0337|consen 96 LSPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEADR 175 (529)
T ss_pred ccCcHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehheeccccceeeeeehhhhH
Confidence 99999999999999999999999999999998766544
Q ss_pred ------------------CCceEEEEeccCcHHHHHHHHHhhccceEEEecccccccCccceeEEEEccccchhhhHHHH
Q psy9620 230 ------------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGL 291 (453)
Q Consensus 230 ------------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~l 291 (453)
..+|+++||||+|..+..+++.-+.+|+.+.++... .....++.....+...+|...|+.+
T Consensus 176 lfemgfqeql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVRldvet-kise~lk~~f~~~~~a~K~aaLl~i 254 (529)
T KOG0337|consen 176 LFEMGFQEQLHEILSRLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVET-KISELLKVRFFRVRKAEKEAALLSI 254 (529)
T ss_pred HHhhhhHHHHHHHHHhCCCcceEEEEeccCchhhHHHHHccCCCCceEEeehhh-hcchhhhhheeeeccHHHHHHHHHH
Confidence 567999999999999999999999999888755433 5667777778888888899999888
Q ss_pred HHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcE
Q psy9620 292 LNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKF 371 (453)
Q Consensus 292 l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~ 371 (453)
+..... +.+++|||.|+..++.+...|...++.+..+++.|++.-|..-+.+|+.++..+||.||+++||+|||-.+.
T Consensus 255 l~~~~~--~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldn 332 (529)
T KOG0337|consen 255 LGGRIK--DKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDN 332 (529)
T ss_pred Hhcccc--ccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccceEEEehhhhccCCCccccc
Confidence 887643 458999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcCCChHHHHHHHHHHHh
Q psy9620 372 VINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDLIDVLTE 421 (453)
Q Consensus 372 VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~l~~ 421 (453)
|||||+|.+..-|+||+||+.|+|..|.+|.++.+++..++-+|-.++..
T Consensus 333 vinyd~p~~~klFvhRVgr~aragrtg~aYs~V~~~~~~yl~DL~lflgr 382 (529)
T KOG0337|consen 333 VINYDFPPDDKLFVHRVGRVARAGRTGRAYSLVASTDDPYLLDLQLFLGR 382 (529)
T ss_pred cccccCCCCCceEEEEecchhhccccceEEEEEecccchhhhhhhhhcCC
Confidence 99999999999999999999999999999999999998888777766544
|
|
| >PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-43 Score=363.39 Aligned_cols=277 Identities=23% Similarity=0.327 Sum_probs=210.8
Q ss_pred CCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHH
Q psy9620 119 NFPDYVLKEVKR-QGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRE 197 (453)
Q Consensus 119 ~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~ 197 (453)
+....+...+++ +||..|+|+|.++|+.++.|+|+|+++|||+|||+||++|+|.. .+.+|||+|+++
T Consensus 443 pw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~-----------~GiTLVISPLiS 511 (1195)
T PLN03137 443 PWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC-----------PGITLVISPLVS 511 (1195)
T ss_pred CchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc-----------CCcEEEEeCHHH
Confidence 344556665554 58999999999999999999999999999999999999999853 346999999999
Q ss_pred HHHHHHHHHHHhcCCCCceEEEEeCCccCCC-------------------------------------------------
Q psy9620 198 LAQQIQEVARDFGSSTYLRSTCVYGGASKGP------------------------------------------------- 228 (453)
Q Consensus 198 La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~------------------------------------------------- 228 (453)
|+.++...+... ++++..+.++.....
T Consensus 512 LmqDQV~~L~~~----GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVI 587 (1195)
T PLN03137 512 LIQDQIMNLLQA----NIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVI 587 (1195)
T ss_pred HHHHHHHHHHhC----CCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceecc
Confidence 998655555443 233333333211000
Q ss_pred --------------------------CCCceEEEEeccCcHHHHHHHHHhhccc-eEEEecccccccCccceeEEEEccc
Q psy9620 229 --------------------------QPDRQVLMWSATWPREVQKLAEDFLDSY-IQINIGSLTLSANHNIQQVVEVCAE 281 (453)
Q Consensus 229 --------------------------~~~~q~v~~SAT~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~ 281 (453)
-+..+++++|||++..+.+.+...+... ..+.... ....++. +.+...
T Consensus 588 DEAHcVSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~S---f~RpNL~--y~Vv~k 662 (1195)
T PLN03137 588 DEAHCVSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQS---FNRPNLW--YSVVPK 662 (1195)
T ss_pred CcchhhhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeecc---cCccceE--EEEecc
Confidence 0578899999999998887655554321 1111111 1112222 222222
Q ss_pred cch-hhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccC
Q psy9620 282 HEK-ENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVA 360 (453)
Q Consensus 282 ~~k-~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~ 360 (453)
..+ ...+..++... ....+.||||.++++|+.++..|...++.+..+|++|++.+|..++++|+.|+++|||||+++
T Consensus 663 ~kk~le~L~~~I~~~--~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAF 740 (1195)
T PLN03137 663 TKKCLEDIDKFIKEN--HFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAF 740 (1195)
T ss_pred chhHHHHHHHHHHhc--ccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechh
Confidence 211 22333333321 224578999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCcEEEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcCCChHHHHHHHH
Q psy9620 361 ARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDLID 417 (453)
Q Consensus 361 ~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~ 417 (453)
+||||+|+|++||||++|.+++.|+||+|||||.|.++.|++|+...|....+.++.
T Consensus 741 GMGIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILlys~~D~~~~~~lI~ 797 (1195)
T PLN03137 741 GMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHMIS 797 (1195)
T ss_pred hcCCCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEecHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999888776666664
|
|
| >TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-42 Score=350.27 Aligned_cols=267 Identities=24% Similarity=0.349 Sum_probs=208.0
Q ss_pred HCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHh
Q psy9620 130 RQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDF 209 (453)
Q Consensus 130 ~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~ 209 (453)
.+||..|+|+|.++|+.+++++|+++++|||+|||++|++|++.. +..+|||+||++|+.|+.+.+..+
T Consensus 6 ~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~-----------~~~~lVi~P~~~L~~dq~~~l~~~ 74 (470)
T TIGR00614 6 VFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCS-----------DGITLVISPLISLMEDQVLQLKAS 74 (470)
T ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHc-----------CCcEEEEecHHHHHHHHHHHHHHc
Confidence 459999999999999999999999999999999999999999852 346999999999999998888765
Q ss_pred cCCCCceEEEEeCCccCC-------------------------------------C------------------------
Q psy9620 210 GSSTYLRSTCVYGGASKG-------------------------------------P------------------------ 228 (453)
Q Consensus 210 ~~~~~~~~~~~~gg~~~~-------------------------------------~------------------------ 228 (453)
+ +.+..+.++.... .
T Consensus 75 g----i~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~ 150 (470)
T TIGR00614 75 G----IPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDY 150 (470)
T ss_pred C----CcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHH
Confidence 3 3333332222110 0
Q ss_pred ---------CCCceEEEEeccCcHHHHHHHHHhh--ccceEEEecccccccCccceeEEEEccccchhhhHHHHHHhhhc
Q psy9620 229 ---------QPDRQVLMWSATWPREVQKLAEDFL--DSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISS 297 (453)
Q Consensus 229 ---------~~~~q~v~~SAT~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~ 297 (453)
.++.+++++|||+++.+.......+ .++..+.. .. ...++...+... .......+..++.. .
T Consensus 151 ~~l~~l~~~~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~-s~---~r~nl~~~v~~~-~~~~~~~l~~~l~~--~ 223 (470)
T TIGR00614 151 KALGSLKQKFPNVPIMALTATASPSVREDILRQLNLKNPQIFCT-SF---DRPNLYYEVRRK-TPKILEDLLRFIRK--E 223 (470)
T ss_pred HHHHHHHHHcCCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeC-CC---CCCCcEEEEEeC-CccHHHHHHHHHHH--h
Confidence 0577899999999998776554443 23322221 11 112222222111 11222333333332 2
Q ss_pred CCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEEEcCC
Q psy9620 298 KDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVINFDY 377 (453)
Q Consensus 298 ~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~ 377 (453)
.....+||||+|+++|+.++..|...++.+..+|++|++.+|..++++|++|+++|||||+++++|||+|+|++||||++
T Consensus 224 ~~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~ 303 (470)
T TIGR00614 224 FKGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSL 303 (470)
T ss_pred cCCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCC
Confidence 33456799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhHHHHhhhcccCCCCcceEEEEEcCCChHHHHHHHHH
Q psy9620 378 PNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDLIDV 418 (453)
Q Consensus 378 p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~ 418 (453)
|.++++|+||+|||||.|.+|.|++|+++.|...++.++..
T Consensus 304 P~s~~~y~Qr~GRaGR~G~~~~~~~~~~~~d~~~~~~~~~~ 344 (470)
T TIGR00614 304 PKSMESYYQESGRAGRDGLPSECHLFYAPADINRLRRLLME 344 (470)
T ss_pred CCCHHHHHhhhcCcCCCCCCceEEEEechhHHHHHHHHHhc
Confidence 99999999999999999999999999999988877776643
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG4284|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-43 Score=340.93 Aligned_cols=293 Identities=30% Similarity=0.462 Sum_probs=257.0
Q ss_pred CCCccccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCc
Q psy9620 108 APNPITEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGP 187 (453)
Q Consensus 108 ~p~p~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~ 187 (453)
.|.-...|+++.|...++..|+..+|..||++|..|||.++.+-|+|++|..|+|||++|.+.+++.+.... ..+
T Consensus 20 ~~~~~~~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~~-----~~~ 94 (980)
T KOG4284|consen 20 QSNCTPGFEQLALWREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSRS-----SHI 94 (980)
T ss_pred ccCCCCCHHHHHHHHHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCccc-----Ccc
Confidence 345556899999999999999999999999999999999999999999999999999999999988776542 577
Q ss_pred EEEEEcCCHHHHHHHHHHHHHhcCC-CCceEEEEeCCccCCCC-------------------------------------
Q psy9620 188 IVLVLAPTRELAQQIQEVARDFGSS-TYLRSTCVYGGASKGPQ------------------------------------- 229 (453)
Q Consensus 188 ~vlil~Ptr~La~q~~~~~~~~~~~-~~~~~~~~~gg~~~~~~------------------------------------- 229 (453)
.++||+||||+|.|+.+.+.+++.. .+.++.+..||+.....
T Consensus 95 q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk~~rIvIGtPGRi~qL~el~~~n~s~vrlfVLD 174 (980)
T KOG4284|consen 95 QKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLKQTRIVIGTPGRIAQLVELGAMNMSHVRLFVLD 174 (980)
T ss_pred eeEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhhhceEEecCchHHHHHHHhcCCCccceeEEEec
Confidence 8999999999999999999999864 58999999999875543
Q ss_pred -----------------------CCceEEEEeccCcHHHHHHHHHhhccceEEEecccccccCccceeEEEEcccc----
Q psy9620 230 -----------------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEH---- 282 (453)
Q Consensus 230 -----------------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---- 282 (453)
..+|++.||||.|.++..++..|++++..+...... ...-.|+|++......
T Consensus 175 EADkL~~t~sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d-~~L~GikQyv~~~~s~nnsv 253 (980)
T KOG4284|consen 175 EADKLMDTESFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADD-VQLFGIKQYVVAKCSPNNSV 253 (980)
T ss_pred cHHhhhchhhHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccceeecccCC-ceeechhheeeeccCCcchH
Confidence 578999999999999999999999999888765544 3334567776655432
Q ss_pred ----chhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEec
Q psy9620 283 ----EKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATD 358 (453)
Q Consensus 283 ----~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~ 358 (453)
.|...|-++++.| +-..+||||+....|+.++..|...|++|.++.|.|++.+|..+++.++.-.++|||+||
T Consensus 254 eemrlklq~L~~vf~~i---py~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTD 330 (980)
T KOG4284|consen 254 EEMRLKLQKLTHVFKSI---PYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTD 330 (980)
T ss_pred HHHHHHHHHHHHHHhhC---chHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhceEEEEEecc
Confidence 3445555555544 345889999999999999999999999999999999999999999999999999999999
Q ss_pred cCccCCCCCCCcEEEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcCCCh
Q psy9620 359 VAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNS 409 (453)
Q Consensus 359 ~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~ 409 (453)
..+||||-++|++|||.|.|.+.+.|+||||||||.|..|.+++|+.....
T Consensus 331 LtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~e 381 (980)
T KOG4284|consen 331 LTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHGAAVTLLEDERE 381 (980)
T ss_pred hhhccCCccccceEEecCCCcchHHHHHHhhhcccccccceeEEEeccchh
Confidence 999999999999999999999999999999999999999999999987654
|
|
| >PRK11057 ATP-dependent DNA helicase RecQ; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-42 Score=352.21 Aligned_cols=273 Identities=22% Similarity=0.376 Sum_probs=210.2
Q ss_pred CHHHHHHHHH-CCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHH
Q psy9620 121 PDYVLKEVKR-QGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELA 199 (453)
Q Consensus 121 ~~~l~~~l~~-~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La 199 (453)
++...+.|++ +||..|+|+|.++|+.+++++|+++++|||+|||++|++|++.. ...+|||+|+++|+
T Consensus 10 ~~~~~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~-----------~g~tlVisPl~sL~ 78 (607)
T PRK11057 10 ESLAKQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL-----------DGLTLVVSPLISLM 78 (607)
T ss_pred hhHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc-----------CCCEEEEecHHHHH
Confidence 3334444544 59999999999999999999999999999999999999999853 23599999999999
Q ss_pred HHHHHHHHHhcCCCCceEEEEeCCccCC----------------------------------------------------
Q psy9620 200 QQIQEVARDFGSSTYLRSTCVYGGASKG---------------------------------------------------- 227 (453)
Q Consensus 200 ~q~~~~~~~~~~~~~~~~~~~~gg~~~~---------------------------------------------------- 227 (453)
.|+.+.++.++ +.+.++.++....
T Consensus 79 ~dqv~~l~~~g----i~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~ 154 (607)
T PRK11057 79 KDQVDQLLANG----VAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQW 154 (607)
T ss_pred HHHHHHHHHcC----CcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccc
Confidence 99988887653 2222222211100
Q ss_pred ----------------CCCCceEEEEeccCcHHHHHHHHHhh--ccceEEEecccccccCccceeEEEEccccchhhhHH
Q psy9620 228 ----------------PQPDRQVLMWSATWPREVQKLAEDFL--DSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLF 289 (453)
Q Consensus 228 ----------------~~~~~q~v~~SAT~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~ 289 (453)
..+..+++++|||.+..+.......+ .++.. ..... ...++. +.+.....+...+.
T Consensus 155 G~~fr~~y~~L~~l~~~~p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~-~~~~~---~r~nl~--~~v~~~~~~~~~l~ 228 (607)
T PRK11057 155 GHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLI-QISSF---DRPNIR--YTLVEKFKPLDQLM 228 (607)
T ss_pred cCcccHHHHHHHHHHHhCCCCcEEEEecCCChhHHHHHHHHhCCCCeEE-EECCC---CCCcce--eeeeeccchHHHHH
Confidence 00577899999999987765443333 23322 22211 112222 12222222333333
Q ss_pred HHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCC
Q psy9620 290 GLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDV 369 (453)
Q Consensus 290 ~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v 369 (453)
.++ ......++||||+|+++|+.++..|...++.+..+|++|++.+|..+++.|+.|+++|||||+++++|||+|+|
T Consensus 229 ~~l---~~~~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V 305 (607)
T PRK11057 229 RYV---QEQRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNV 305 (607)
T ss_pred HHH---HhcCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCc
Confidence 333 33456789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcCCChHHHHHHHH
Q psy9620 370 KFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDLID 417 (453)
Q Consensus 370 ~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~ 417 (453)
++|||||+|.|.++|+||+|||||.|.+|.|++|+++.|...++.+++
T Consensus 306 ~~VI~~d~P~s~~~y~Qr~GRaGR~G~~~~~ill~~~~d~~~~~~~~~ 353 (607)
T PRK11057 306 RFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLE 353 (607)
T ss_pred CEEEEeCCCCCHHHHHHHhhhccCCCCCceEEEEeCHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999988777666553
|
|
| >KOG0350|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-42 Score=324.35 Aligned_cols=302 Identities=25% Similarity=0.380 Sum_probs=246.8
Q ss_pred ccccccCCCHH----------HHHHHHHCCCCCCCHHHHHHHHHHhc---------CCcEEEEecCCCcchhhhhHHHHH
Q psy9620 113 TEFAEANFPDY----------VLKEVKRQGFDRPTPIQAQGWPIAMS---------GSNMVGVAQTGSGKTLAYMLPAIV 173 (453)
Q Consensus 113 ~~f~~~~l~~~----------l~~~l~~~g~~~~~~~Q~~~i~~i~~---------g~d~li~a~TGsGKT~~~~l~~l~ 173 (453)
..|+.+++.+. +.+++.++++....|+|..++|.++. .+|+.+.||||||||++|.||+++
T Consensus 127 q~~s~l~~se~k~~~d~lea~~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ 206 (620)
T KOG0350|consen 127 QIFSVLGKSEMKNLEDTLEATIDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQ 206 (620)
T ss_pred eeeeccchhHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHH
Confidence 44555555544 44558899999999999999998862 579999999999999999999999
Q ss_pred HhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhcCCCCceEEEEeCCccCCCC------------------------
Q psy9620 174 HINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGSSTYLRSTCVYGGASKGPQ------------------------ 229 (453)
Q Consensus 174 ~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~------------------------ 229 (453)
.+.+.+- +.-++|||+||++|+.|+++.+.++....++.++.+.|..+....
T Consensus 207 ~L~~R~v----~~LRavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLV 282 (620)
T KOG0350|consen 207 LLSSRPV----KRLRAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLV 282 (620)
T ss_pred HHccCCc----cceEEEEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHH
Confidence 9876532 346899999999999999999999999999998777765433221
Q ss_pred ----------------------------------------------------------------------------CCce
Q psy9620 230 ----------------------------------------------------------------------------PDRQ 233 (453)
Q Consensus 230 ----------------------------------------------------------------------------~~~q 233 (453)
+..+
T Consensus 283 DHl~~~k~f~Lk~LrfLVIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~ 362 (620)
T KOG0350|consen 283 DHLNNTKSFDLKHLRFLVIDEADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLW 362 (620)
T ss_pred HhccCCCCcchhhceEEEechHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhH
Confidence 3345
Q ss_pred EEEEeccCcHHHHHHHHHhhccceEEEec---ccccccCccceeEEEEccccchhhhHHHHHHhhhcCCCCcEEEEEcch
Q psy9620 234 VLMWSATWPREVQKLAEDFLDSYIQINIG---SLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETK 310 (453)
Q Consensus 234 ~v~~SAT~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~lVF~~s~ 310 (453)
.+++|||+...-.++...-+..|....+. ...++.+..+.+....+....+.-.+..++.. .+-.++|+|+++.
T Consensus 363 kL~~satLsqdP~Kl~~l~l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~---~k~~r~lcf~~S~ 439 (620)
T KOG0350|consen 363 KLVFSATLSQDPSKLKDLTLHIPRLFHVSKPLIGRYSLPSSLSHRLVVTEPKFKPLAVYALITS---NKLNRTLCFVNSV 439 (620)
T ss_pred hhhcchhhhcChHHHhhhhcCCCceEEeecccceeeecChhhhhceeecccccchHhHHHHHHH---hhcceEEEEecch
Confidence 77889998777777766666666333322 12345556666666666666666666666654 3567999999999
Q ss_pred hHHHHHHHHHH----hcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEEEcCCCCChhHHHH
Q psy9620 311 RKVDKITKSIQ----NYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVINFDYPNNSEDYIH 386 (453)
Q Consensus 311 ~~~~~l~~~L~----~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~q 386 (453)
..+.+++..|. ....++-.+.|.++...|...+++|+.|.++||||+|+++||||+.+|+.|||||+|.+...|+|
T Consensus 440 ~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVH 519 (620)
T KOG0350|consen 440 SSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDPPASDKTYVH 519 (620)
T ss_pred HHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCCCchhhHHHH
Confidence 99999999987 33566777999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccCCCCcceEEEEEcCCChHHHHHHHHHHHh
Q psy9620 387 RIGRTGRSDNTGTSYTFFTQQNSRQAKDLIDVLTE 421 (453)
Q Consensus 387 r~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~l~~ 421 (453)
|+||++|+|+.|.|+.+++..+.+.+.++++....
T Consensus 520 R~GRTARAgq~G~a~tll~~~~~r~F~klL~~~~~ 554 (620)
T KOG0350|consen 520 RAGRTARAGQDGYAITLLDKHEKRLFSKLLKKTNL 554 (620)
T ss_pred hhcccccccCCceEEEeeccccchHHHHHHHHhcc
Confidence 99999999999999999999999999888876554
|
|
| >TIGR01389 recQ ATP-dependent DNA helicase RecQ | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=344.06 Aligned_cols=267 Identities=25% Similarity=0.408 Sum_probs=211.3
Q ss_pred HHHH-CCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHH
Q psy9620 127 EVKR-QGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEV 205 (453)
Q Consensus 127 ~l~~-~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~ 205 (453)
.|++ +||.+|+|+|.++|+.+++|+|+++++|||+|||++|++|++.. ...+|||+|+++|+.|+.+.
T Consensus 4 ~l~~~fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~-----------~g~~lVisPl~sL~~dq~~~ 72 (591)
T TIGR01389 4 VLKRTFGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLL-----------KGLTVVISPLISLMKDQVDQ 72 (591)
T ss_pred HHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc-----------CCcEEEEcCCHHHHHHHHHH
Confidence 3443 69999999999999999999999999999999999999999842 33589999999999999988
Q ss_pred HHHhcCCCCceEEEEeCCccCCCC--------------------------------------------------------
Q psy9620 206 ARDFGSSTYLRSTCVYGGASKGPQ-------------------------------------------------------- 229 (453)
Q Consensus 206 ~~~~~~~~~~~~~~~~gg~~~~~~-------------------------------------------------------- 229 (453)
++.++ +.+..+.++......
T Consensus 73 l~~~g----i~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp 148 (591)
T TIGR01389 73 LRAAG----VAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRP 148 (591)
T ss_pred HHHcC----CcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHH
Confidence 88763 444444333211100
Q ss_pred ------------CCceEEEEeccCcHHHHHHHHHhhc--cceEEEecccccccCccceeEEEEccccchhhhHHHHHHhh
Q psy9620 230 ------------PDRQVLMWSATWPREVQKLAEDFLD--SYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDI 295 (453)
Q Consensus 230 ------------~~~q~v~~SAT~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~ 295 (453)
+..+++++|||.+..+.......+. ++..+ ... ....++. +.......+...+.+++..
T Consensus 149 ~y~~l~~l~~~~~~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~-~~~---~~r~nl~--~~v~~~~~~~~~l~~~l~~- 221 (591)
T TIGR01389 149 EYQRLGSLAERFPQVPRIALTATADAETRQDIRELLRLADANEF-ITS---FDRPNLR--FSVVKKNNKQKFLLDYLKK- 221 (591)
T ss_pred HHHHHHHHHHhCCCCCEEEEEeCCCHHHHHHHHHHcCCCCCCeE-ecC---CCCCCcE--EEEEeCCCHHHHHHHHHHh-
Confidence 4567999999999888766555543 22221 111 1112222 2222333444555555543
Q ss_pred hcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEEEc
Q psy9620 296 SSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVINF 375 (453)
Q Consensus 296 ~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~ 375 (453)
....++||||+|++.|+.+++.|...++.+..+|++|++.+|..+++.|.+|+++|||||+++++|||+|+|++||||
T Consensus 222 --~~~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~ 299 (591)
T TIGR01389 222 --HRGQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHY 299 (591)
T ss_pred --cCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEc
Confidence 335689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChhHHHHhhhcccCCCCcceEEEEEcCCChHHHHHHHH
Q psy9620 376 DYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDLID 417 (453)
Q Consensus 376 d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~ 417 (453)
++|.|++.|+|++|||||.|.++.|++|++..|....+.+++
T Consensus 300 ~~p~s~~~y~Q~~GRaGR~G~~~~~il~~~~~d~~~~~~~i~ 341 (591)
T TIGR01389 300 DMPGNLESYYQEAGRAGRDGLPAEAILLYSPADIALLKRRIE 341 (591)
T ss_pred CCCCCHHHHhhhhccccCCCCCceEEEecCHHHHHHHHHHHh
Confidence 999999999999999999999999999999888766665553
|
The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ. |
| >PRK02362 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-40 Score=345.20 Aligned_cols=282 Identities=23% Similarity=0.318 Sum_probs=213.9
Q ss_pred cccccCCCHHHHHHHHHCCCCCCCHHHHHHHHH-HhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEE
Q psy9620 114 EFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPI-AMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVL 192 (453)
Q Consensus 114 ~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~-i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil 192 (453)
.|++++||+.+++.+++.||.+|+|+|.++++. +++++|++++||||||||++|++|++.++.. +.++|||
T Consensus 2 ~~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~--------~~kal~i 73 (737)
T PRK02362 2 KIAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIAR--------GGKALYI 73 (737)
T ss_pred ChhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhc--------CCcEEEE
Confidence 588999999999999999999999999999998 7789999999999999999999999988742 5579999
Q ss_pred cCCHHHHHHHHHHHHHhcCCCCceEEEEeCCccCCCC-------------------------------------------
Q psy9620 193 APTRELAQQIQEVARDFGSSTYLRSTCVYGGASKGPQ------------------------------------------- 229 (453)
Q Consensus 193 ~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~------------------------------------------- 229 (453)
+|+++||.|+++.++++.. .++++..++|+......
T Consensus 74 ~P~raLa~q~~~~~~~~~~-~g~~v~~~tGd~~~~~~~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~l~d~ 152 (737)
T PRK02362 74 VPLRALASEKFEEFERFEE-LGVRVGISTGDYDSRDEWLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHLIDSA 152 (737)
T ss_pred eChHHHHHHHHHHHHHhhc-CCCEEEEEeCCcCccccccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECccccCCC
Confidence 9999999999999998753 47888888887643321
Q ss_pred -----------------CCceEEEEeccCcHHHHHHHHHhhccceEEEeccccccc----Cccc--eeEEEEccccchhh
Q psy9620 230 -----------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSA----NHNI--QQVVEVCAEHEKEN 286 (453)
Q Consensus 230 -----------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~i--~~~~~~~~~~~k~~ 286 (453)
+..|++++|||++. ..++++++....+........... ...+ ...........+ .
T Consensus 153 ~rg~~le~il~rl~~~~~~~qii~lSATl~n-~~~la~wl~~~~~~~~~rpv~l~~~v~~~~~~~~~~~~~~~~~~~~-~ 230 (737)
T PRK02362 153 NRGPTLEVTLAKLRRLNPDLQVVALSATIGN-ADELADWLDAELVDSEWRPIDLREGVFYGGAIHFDDSQREVEVPSK-D 230 (737)
T ss_pred cchHHHHHHHHHHHhcCCCCcEEEEcccCCC-HHHHHHHhCCCcccCCCCCCCCeeeEecCCeeccccccccCCCccc-h
Confidence 46799999999964 455555543221110000000000 0000 000000000111 1
Q ss_pred hHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhc------------------------------------CCeEEEE
Q psy9620 287 KLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNY------------------------------------GWAAVGI 330 (453)
Q Consensus 287 ~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~------------------------------------~~~~~~~ 330 (453)
....++.... ...+++||||+|++.|+.++..|... ...+.++
T Consensus 231 ~~~~~~~~~~-~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~h 309 (737)
T PRK02362 231 DTLNLVLDTL-EEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFH 309 (737)
T ss_pred HHHHHHHHHH-HcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEee
Confidence 2222232222 24579999999999999998888643 1368899
Q ss_pred cCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEEE----cC-----CCCChhHHHHhhhcccCCCCc--ce
Q psy9620 331 HGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVIN----FD-----YPNNSEDYIHRIGRTGRSDNT--GT 399 (453)
Q Consensus 331 h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~----~d-----~p~s~~~y~qr~GRagR~g~~--g~ 399 (453)
|++|++.+|..+++.|++|.++|||||+++++|||+|++++||+ || .|.+..+|+||+|||||.|.+ |.
T Consensus 310 Hagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d~~G~ 389 (737)
T PRK02362 310 HAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLDPYGE 389 (737)
T ss_pred cCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCCCCce
Confidence 99999999999999999999999999999999999999999997 76 588999999999999999865 89
Q ss_pred EEEEEcCC
Q psy9620 400 SYTFFTQQ 407 (453)
Q Consensus 400 ~~~~~~~~ 407 (453)
|++++...
T Consensus 390 ~ii~~~~~ 397 (737)
T PRK02362 390 AVLLAKSY 397 (737)
T ss_pred EEEEecCc
Confidence 99988654
|
|
| >PRK13767 ATP-dependent helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=339.37 Aligned_cols=284 Identities=20% Similarity=0.286 Sum_probs=204.7
Q ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCC-CCCCcEEEEEcCCHHH
Q psy9620 120 FPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLK-PGDGPIVLVLAPTREL 198 (453)
Q Consensus 120 l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~-~~~~~~vlil~Ptr~L 198 (453)
|++.+.+.+++ +|..|||+|.++|+.+++|+|++++||||||||++|++|++..+....... ...++++|||+||++|
T Consensus 18 l~~~v~~~~~~-~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraL 96 (876)
T PRK13767 18 LRPYVREWFKE-KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRAL 96 (876)
T ss_pred cCHHHHHHHHH-ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHH
Confidence 66777777665 699999999999999999999999999999999999999999887532211 1346789999999999
Q ss_pred HHHHHHHHHH-------h----cCCC-CceEEEEeCCccCCCC-------------------------------------
Q psy9620 199 AQQIQEVARD-------F----GSST-YLRSTCVYGGASKGPQ------------------------------------- 229 (453)
Q Consensus 199 a~q~~~~~~~-------~----~~~~-~~~~~~~~gg~~~~~~------------------------------------- 229 (453)
+.|+++.+.+ + +... ++++.+.+|+.+...+
T Consensus 97 a~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~V 176 (876)
T PRK13767 97 NNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWV 176 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEE
Confidence 9999875542 2 2233 6777878777542110
Q ss_pred -----------------------------CCceEEEEeccCcHHHHHHHHHhhcc-----ceEEEecccccccCccceeE
Q psy9620 230 -----------------------------PDRQVLMWSATWPREVQKLAEDFLDS-----YIQINIGSLTLSANHNIQQV 275 (453)
Q Consensus 230 -----------------------------~~~q~v~~SAT~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~i~~~ 275 (453)
...|++++|||+++ ...++.++... +..+.+..........+...
T Consensus 177 VIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~-~~~va~~L~~~~~~~~~r~~~iv~~~~~k~~~i~v~ 255 (876)
T PRK13767 177 IVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEP-LEEVAKFLVGYEDDGEPRDCEIVDARFVKPFDIKVI 255 (876)
T ss_pred EEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCC-HHHHHHHhcCccccCCCCceEEEccCCCccceEEEe
Confidence 45799999999965 34444443221 11111111000000001000
Q ss_pred -----EEEccccchhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhc------CCeEEEEcCCCCHHHHHHHHH
Q psy9620 276 -----VEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNY------GWAAVGIHGDKSQQERDYVLK 344 (453)
Q Consensus 276 -----~~~~~~~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~------~~~~~~~h~~~~~~~r~~~~~ 344 (453)
............+...+..+.. ...++||||+|+..|+.++..|... +..+..+||+|++++|..+++
T Consensus 256 ~p~~~l~~~~~~~~~~~l~~~L~~~i~-~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~ 334 (876)
T PRK13767 256 SPVDDLIHTPAEEISEALYETLHELIK-EHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEE 334 (876)
T ss_pred ccCccccccccchhHHHHHHHHHHHHh-cCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHH
Confidence 0001111122333444444332 2568999999999999999999873 467999999999999999999
Q ss_pred HHhcCCCcEEEEeccCccCCCCCCCcEEEEcCCCCChhHHHHhhhcccCC-CCcceEEEEEcC
Q psy9620 345 EFRNGRAGILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRS-DNTGTSYTFFTQ 406 (453)
Q Consensus 345 ~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~-g~~g~~~~~~~~ 406 (453)
.|++|+++|||||+++++|||+|+|++||+++.|.+..+|+||+||+||. +..+.++++...
T Consensus 335 ~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~~ 397 (876)
T PRK13767 335 KLKRGELKVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIVVD 397 (876)
T ss_pred HHHcCCCeEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEEcC
Confidence 99999999999999999999999999999999999999999999999987 444555555543
|
|
| >TIGR00580 mfd transcription-repair coupling factor (mfd) | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-38 Score=329.87 Aligned_cols=285 Identities=19% Similarity=0.185 Sum_probs=218.8
Q ss_pred CHHHHHHHHH-CCCCCCCHHHHHHHHHHhcC------CcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEc
Q psy9620 121 PDYVLKEVKR-QGFDRPTPIQAQGWPIAMSG------SNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLA 193 (453)
Q Consensus 121 ~~~l~~~l~~-~g~~~~~~~Q~~~i~~i~~g------~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~ 193 (453)
+..+.+.+.+ ++| +||++|.+||+.++++ .|++++|+||||||++|++|++..+.. +++++||+
T Consensus 437 ~~~~~~~~~~~~~f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~--------g~qvlvLv 507 (926)
T TIGR00580 437 DLEWQQEFEDSFPF-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLD--------GKQVAVLV 507 (926)
T ss_pred CHHHHHHHHHhCCC-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHh--------CCeEEEEe
Confidence 3455555544 588 6999999999999874 799999999999999999999987753 56799999
Q ss_pred CCHHHHHHHHHHHHHhcCCCCceEEEEeCCccCCC-------------C-------------------------------
Q psy9620 194 PTRELAQQIQEVARDFGSSTYLRSTCVYGGASKGP-------------Q------------------------------- 229 (453)
Q Consensus 194 Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~-------------~------------------------------- 229 (453)
||++||.|+++.+++++...++++..++++.+... +
T Consensus 508 PT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f~~L~llVIDEahrfgv 587 (926)
T TIGR00580 508 PTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDVKFKDLGLLIIDEEQRFGV 587 (926)
T ss_pred CcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCCCcccCCEEEeecccccch
Confidence 99999999999999988878888887776543211 0
Q ss_pred ----------CCceEEEEeccCcHHHHHHHHHhhccceEEEecccccccCccceeEEEEccccchhhhHHHHHHhhhcCC
Q psy9620 230 ----------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKD 299 (453)
Q Consensus 230 ----------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~ 299 (453)
...|+++||||+.+....+......++..+...... ...+...+... ........++..+. .
T Consensus 588 ~~~~~L~~~~~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~~---R~~V~t~v~~~---~~~~i~~~i~~el~--~ 659 (926)
T TIGR00580 588 KQKEKLKELRTSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPED---RLPVRTFVMEY---DPELVREAIRRELL--R 659 (926)
T ss_pred hHHHHHHhcCCCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCCC---ccceEEEEEec---CHHHHHHHHHHHHH--c
Confidence 568999999998776655554444555444432211 12233333211 11111122333332 3
Q ss_pred CCcEEEEEcchhHHHHHHHHHHhc--CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEEEcCC
Q psy9620 300 ENKTIIFAETKRKVDKITKSIQNY--GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVINFDY 377 (453)
Q Consensus 300 ~~~~lVF~~s~~~~~~l~~~L~~~--~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~ 377 (453)
.++++|||++++.++.+++.|... ++.+..+||.|++.+|+.++++|++|+.+|||||+++++|||+|++++||+++.
T Consensus 660 g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi~~a 739 (926)
T TIGR00580 660 GGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTIIIERA 739 (926)
T ss_pred CCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEEEecC
Confidence 578999999999999999999985 788999999999999999999999999999999999999999999999999998
Q ss_pred CC-ChhHHHHhhhcccCCCCcceEEEEEcCCC--hHHHHHHHHHHHhc
Q psy9620 378 PN-NSEDYIHRIGRTGRSDNTGTSYTFFTQQN--SRQAKDLIDVLTES 422 (453)
Q Consensus 378 p~-s~~~y~qr~GRagR~g~~g~~~~~~~~~~--~~~~~~l~~~l~~~ 422 (453)
|. +..+|+||+||+||.++.|.|++++.+.+ .....+-++.+++.
T Consensus 740 ~~~gls~l~Qr~GRvGR~g~~g~aill~~~~~~l~~~~~~RL~~~~~~ 787 (926)
T TIGR00580 740 DKFGLAQLYQLRGRVGRSKKKAYAYLLYPHQKALTEDAQKRLEAIQEF 787 (926)
T ss_pred CCCCHHHHHHHhcCCCCCCCCeEEEEEECCcccCCHHHHHHHHHHHHh
Confidence 75 67899999999999999999999997653 23444444555444
|
All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families. |
| >PRK00254 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-38 Score=331.85 Aligned_cols=284 Identities=21% Similarity=0.288 Sum_probs=212.2
Q ss_pred cccccCCCHHHHHHHHHCCCCCCCHHHHHHHHH-HhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEE
Q psy9620 114 EFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPI-AMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVL 192 (453)
Q Consensus 114 ~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~-i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil 192 (453)
+|+++++++.+.+.+++.||.+|+|+|.++++. +++++|+++++|||||||++|.+|++.++.. .+.++|||
T Consensus 2 ~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~-------~~~~~l~l 74 (720)
T PRK00254 2 KVDELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLR-------EGGKAVYL 74 (720)
T ss_pred cHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHh-------cCCeEEEE
Confidence 578899999999999999999999999999986 7899999999999999999999999988764 25679999
Q ss_pred cCCHHHHHHHHHHHHHhcCCCCceEEEEeCCccCCCC-------------------------------------------
Q psy9620 193 APTRELAQQIQEVARDFGSSTYLRSTCVYGGASKGPQ------------------------------------------- 229 (453)
Q Consensus 193 ~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~------------------------------------------- 229 (453)
+|+++|+.|+++.+..+. ..++++..++|+......
T Consensus 75 ~P~~aLa~q~~~~~~~~~-~~g~~v~~~~Gd~~~~~~~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l~~~ 153 (720)
T PRK00254 75 VPLKALAEEKYREFKDWE-KLGLRVAMTTGDYDSTDEWLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHLIGSY 153 (720)
T ss_pred eChHHHHHHHHHHHHHHh-hcCCEEEEEeCCCCCchhhhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCccCCc
Confidence 999999999999998864 457888888887643321
Q ss_pred --------------CCceEEEEeccCcHHHHHHHHHhhccceEEEecccccccCccceeEEEEcccc--ch-hhhHHHHH
Q psy9620 230 --------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEH--EK-ENKLFGLL 292 (453)
Q Consensus 230 --------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~k-~~~l~~ll 292 (453)
...|+|++|||++. ..++++++....+.......... ...+.+........ .+ ...+..++
T Consensus 154 ~rg~~le~il~~l~~~~qiI~lSATl~n-~~~la~wl~~~~~~~~~rpv~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (720)
T PRK00254 154 DRGATLEMILTHMLGRAQILGLSATVGN-AEELAEWLNAELVVSDWRPVKLR-KGVFYQGFLFWEDGKIERFPNSWESLV 231 (720)
T ss_pred cchHHHHHHHHhcCcCCcEEEEEccCCC-HHHHHHHhCCccccCCCCCCcce-eeEecCCeeeccCcchhcchHHHHHHH
Confidence 46799999999964 56666654332211100000000 00000011111111 01 11222233
Q ss_pred HhhhcCCCCcEEEEEcchhHHHHHHHHHHhc---------------------------------CCeEEEEcCCCCHHHH
Q psy9620 293 NDISSKDENKTIIFAETKRKVDKITKSIQNY---------------------------------GWAAVGIHGDKSQQER 339 (453)
Q Consensus 293 ~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~---------------------------------~~~~~~~h~~~~~~~r 339 (453)
..... ...++||||+|++.|+.++..|... ...+.++|++|++.+|
T Consensus 232 ~~~i~-~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~~eR 310 (720)
T PRK00254 232 YDAVK-KGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGRTER 310 (720)
T ss_pred HHHHH-hCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCHHHH
Confidence 22222 3569999999999999888776421 2358999999999999
Q ss_pred HHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEEE-------cCCCC-ChhHHHHhhhcccCCC--CcceEEEEEcCCC
Q psy9620 340 DYVLKEFRNGRAGILVATDVAARGLDVDDVKFVIN-------FDYPN-NSEDYIHRIGRTGRSD--NTGTSYTFFTQQN 408 (453)
Q Consensus 340 ~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~-------~d~p~-s~~~y~qr~GRagR~g--~~g~~~~~~~~~~ 408 (453)
..+++.|++|.++|||||+++++|+|+|++++||. ++.|. +..+|+||+|||||.| ..|.++++++.++
T Consensus 311 ~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~~~~ 389 (720)
T PRK00254 311 VLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVATTEE 389 (720)
T ss_pred HHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEEEecCcc
Confidence 99999999999999999999999999999999994 45443 5789999999999975 5699999988755
|
|
| >COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-38 Score=311.31 Aligned_cols=273 Identities=26% Similarity=0.409 Sum_probs=217.8
Q ss_pred HHHHH-CCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHH
Q psy9620 126 KEVKR-QGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQE 204 (453)
Q Consensus 126 ~~l~~-~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~ 204 (453)
..|++ +||..+++-|.++|..+++++|+|+.+|||+||++||++|++.. ...+|||+|..+|.+.+.+
T Consensus 7 ~~L~~~fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~-----------~G~TLVVSPLiSLM~DQV~ 75 (590)
T COG0514 7 QVLKQVFGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL-----------EGLTLVVSPLISLMKDQVD 75 (590)
T ss_pred HHHHHHhCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc-----------CCCEEEECchHHHHHHHHH
Confidence 33444 48999999999999999999999999999999999999999853 2259999999999999999
Q ss_pred HHHHhcCCCCceEEEEeCCccCCCC-------------------------------------------------------
Q psy9620 205 VARDFGSSTYLRSTCVYGGASKGPQ------------------------------------------------------- 229 (453)
Q Consensus 205 ~~~~~~~~~~~~~~~~~gg~~~~~~------------------------------------------------------- 229 (453)
.++..+ +++.++.+..+....
T Consensus 76 ~l~~~G----i~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFR 151 (590)
T COG0514 76 QLEAAG----IRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFR 151 (590)
T ss_pred HHHHcC----ceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccC
Confidence 998864 566655555333322
Q ss_pred -------------CCceEEEEeccCcHHHHHHHHHhhc-cceEEEecccccccCccceeEEEEccccchhhhHHHHHHhh
Q psy9620 230 -------------PDRQVLMWSATWPREVQKLAEDFLD-SYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDI 295 (453)
Q Consensus 230 -------------~~~q~v~~SAT~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~ 295 (453)
++.+++.+|||.++.++..+...+. +...+.+... ..+++...+.... +....+. ++...
T Consensus 152 P~Y~~lg~l~~~~~~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sf---dRpNi~~~v~~~~--~~~~q~~-fi~~~ 225 (590)
T COG0514 152 PDYRRLGRLRAGLPNPPVLALTATATPRVRDDIREQLGLQDANIFRGSF---DRPNLALKVVEKG--EPSDQLA-FLATV 225 (590)
T ss_pred HhHHHHHHHHhhCCCCCEEEEeCCCChHHHHHHHHHhcCCCcceEEecC---CCchhhhhhhhcc--cHHHHHH-HHHhh
Confidence 6789999999999998876666553 2212222221 1122322221111 1222333 33322
Q ss_pred hcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEEEc
Q psy9620 296 SSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVINF 375 (453)
Q Consensus 296 ~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~ 375 (453)
........||||.|++.++.++++|...|+.+..+|++|+.++|+.+.++|..++.+|+|||.++.+|||.|||.+||||
T Consensus 226 ~~~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~ 305 (590)
T COG0514 226 LPQLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHY 305 (590)
T ss_pred ccccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEe
Confidence 23456679999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChhHHHHhhhcccCCCCcceEEEEEcCCChHHHHHHHHHH
Q psy9620 376 DYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDLIDVL 419 (453)
Q Consensus 376 d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~l 419 (453)
|+|.|+++|+|.+|||||.|.+..|++||.+.|....+.+++.-
T Consensus 306 ~lP~s~EsYyQE~GRAGRDG~~a~aill~~~~D~~~~~~~i~~~ 349 (590)
T COG0514 306 DLPGSIESYYQETGRAGRDGLPAEAILLYSPEDIRWQRYLIEQS 349 (590)
T ss_pred cCCCCHHHHHHHHhhccCCCCcceEEEeeccccHHHHHHHHHhh
Confidence 99999999999999999999999999999999988777766653
|
|
| >PRK10917 ATP-dependent DNA helicase RecG; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-37 Score=322.51 Aligned_cols=293 Identities=20% Similarity=0.235 Sum_probs=218.5
Q ss_pred HHHHHCCCCCCCHHHHHHHHHHhcC------CcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHH
Q psy9620 126 KEVKRQGFDRPTPIQAQGWPIAMSG------SNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELA 199 (453)
Q Consensus 126 ~~l~~~g~~~~~~~Q~~~i~~i~~g------~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La 199 (453)
+.+..++| +||++|.++++.+.++ .++|++|+||||||++|++|++..+. .+++++|++||++||
T Consensus 253 ~~~~~l~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~--------~g~q~lilaPT~~LA 323 (681)
T PRK10917 253 KFLASLPF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIE--------AGYQAALMAPTEILA 323 (681)
T ss_pred HHHHhCCC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHH--------cCCeEEEEeccHHHH
Confidence 33445677 7999999999999876 37999999999999999999998774 367799999999999
Q ss_pred HHHHHHHHHhcCCCCceEEEEeCCccCCC-------------C-------------------------------------
Q psy9620 200 QQIQEVARDFGSSTYLRSTCVYGGASKGP-------------Q------------------------------------- 229 (453)
Q Consensus 200 ~q~~~~~~~~~~~~~~~~~~~~gg~~~~~-------------~------------------------------------- 229 (453)
.|+++.+++++...++++.+++|+.+... .
T Consensus 324 ~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~lvVIDE~Hrfg~~qr~~l 403 (681)
T PRK10917 324 EQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFHNLGLVIIDEQHRFGVEQRLAL 403 (681)
T ss_pred HHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhcccceEEEechhhhhHHHHHHH
Confidence 99999999999888899999999876211 0
Q ss_pred ----CCceEEEEeccCcHHHHHHHHHhhccceEEEecccccccCccceeEEEEccccchhhhHHHHHHhhhcCCCCcEEE
Q psy9620 230 ----PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTII 305 (453)
Q Consensus 230 ----~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~lV 305 (453)
...++++||||+.+....+.. ..+.....+.... .....+...+. ...+...+.+.+.... ....+++|
T Consensus 404 ~~~~~~~~iL~~SATp~prtl~~~~--~g~~~~s~i~~~p-~~r~~i~~~~~---~~~~~~~~~~~i~~~~-~~g~q~~v 476 (681)
T PRK10917 404 REKGENPHVLVMTATPIPRTLAMTA--YGDLDVSVIDELP-PGRKPITTVVI---PDSRRDEVYERIREEI-AKGRQAYV 476 (681)
T ss_pred HhcCCCCCEEEEeCCCCHHHHHHHH--cCCCceEEEecCC-CCCCCcEEEEe---CcccHHHHHHHHHHHH-HcCCcEEE
Confidence 357999999997665443332 2222111222111 11122333222 2223334444444333 34569999
Q ss_pred EEcch--------hHHHHHHHHHHhc--CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEEEc
Q psy9620 306 FAETK--------RKVDKITKSIQNY--GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVINF 375 (453)
Q Consensus 306 F~~s~--------~~~~~l~~~L~~~--~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~ 375 (453)
||+.. ..++.+++.|... ++.+..+||+|++.+|+.++++|++|+.+|||||+++++|||+|++++||++
T Consensus 477 ~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDip~v~~VIi~ 556 (681)
T PRK10917 477 VCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGVDVPNATVMVIE 556 (681)
T ss_pred EEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeCcccCCCcEEEEe
Confidence 99954 4566778888765 5789999999999999999999999999999999999999999999999999
Q ss_pred CCCC-ChhHHHHhhhcccCCCCcceEEEEEcCCChHHHHHHHHHHHhcCCCCChHHHHHH
Q psy9620 376 DYPN-NSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDLIDVLTESNHPVDPKLSALA 434 (453)
Q Consensus 376 d~p~-s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~v~~~l~~~~ 434 (453)
+.|. ..+.|+||+||+||.+..|.|+++++........+.++.+.....-..-.-.++.
T Consensus 557 ~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~~~~~~~~~~rl~~~~~~~dgf~iae~dl~ 616 (681)
T PRK10917 557 NAERFGLAQLHQLRGRVGRGAAQSYCVLLYKDPLSETARERLKIMRETNDGFVIAEKDLE 616 (681)
T ss_pred CCCCCCHHHHHHHhhcccCCCCceEEEEEECCCCChhHHHHHHHHHHhcchHHHHHHhHh
Confidence 9997 5788999999999999999999999754444555566667665443332333444
|
|
| >PRK10689 transcription-repair coupling factor; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-37 Score=330.29 Aligned_cols=298 Identities=19% Similarity=0.176 Sum_probs=224.3
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHhcC------CcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCC
Q psy9620 122 DYVLKEVKRQGFDRPTPIQAQGWPIAMSG------SNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPT 195 (453)
Q Consensus 122 ~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g------~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt 195 (453)
++..+....+.| .||++|.++|+.++++ .|+|++++||+|||.+|+.+++..+. .+++++||+||
T Consensus 588 ~~~~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~--------~g~qvlvLvPT 658 (1147)
T PRK10689 588 EQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVE--------NHKQVAVLVPT 658 (1147)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHH--------cCCeEEEEeCc
Confidence 344455566788 8999999999999986 89999999999999999988876653 36789999999
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEEEeCCccCCCC----------------------------------------------
Q psy9620 196 RELAQQIQEVARDFGSSTYLRSTCVYGGASKGPQ---------------------------------------------- 229 (453)
Q Consensus 196 r~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~---------------------------------------------- 229 (453)
++||.|+++.+++++...++++.+++++.+...+
T Consensus 659 ~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~~~L~lLVIDEahrfG~~~ 738 (1147)
T PRK10689 659 TLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKDLGLLIVDEEHRFGVRH 738 (1147)
T ss_pred HHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCHhhCCEEEEechhhcchhH
Confidence 9999999999998776667777766665332110
Q ss_pred --------CCceEEEEeccCcHHHHHHHHHhhccceEEEecccccccCccceeEEEEccccchhhhHHHHHHhhhcCCCC
Q psy9620 230 --------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDEN 301 (453)
Q Consensus 230 --------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~ 301 (453)
.++|+++||||+.+....++...+.++..+...... ...++..+.... .......++..+. ..+
T Consensus 739 ~e~lk~l~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~---r~~v~~~~~~~~---~~~~k~~il~el~--r~g 810 (1147)
T PRK10689 739 KERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAR---RLAVKTFVREYD---SLVVREAILREIL--RGG 810 (1147)
T ss_pred HHHHHhcCCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCC---CCCceEEEEecC---cHHHHHHHHHHHh--cCC
Confidence 578999999998888777777777777666543321 123333333221 1111223344432 256
Q ss_pred cEEEEEcchhHHHHHHHHHHhc--CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEEEcCCC-
Q psy9620 302 KTIIFAETKRKVDKITKSIQNY--GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVINFDYP- 378 (453)
Q Consensus 302 ~~lVF~~s~~~~~~l~~~L~~~--~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p- 378 (453)
+++|||+++..++.+++.|... +..+..+||+|++.+|+.++++|++|+.+|||||+++++|||+|++++||..+..
T Consensus 811 qv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi~~ad~ 890 (1147)
T PRK10689 811 QVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADH 890 (1147)
T ss_pred eEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEEecCCC
Confidence 8999999999999999999987 7889999999999999999999999999999999999999999999999955443
Q ss_pred CChhHHHHhhhcccCCCCcceEEEEEcCCC--hHHHHHHHHHHHhcCC---CCChHHHHHHhh
Q psy9620 379 NNSEDYIHRIGRTGRSDNTGTSYTFFTQQN--SRQAKDLIDVLTESNH---PVDPKLSALASR 436 (453)
Q Consensus 379 ~s~~~y~qr~GRagR~g~~g~~~~~~~~~~--~~~~~~l~~~l~~~~~---~v~~~l~~~~~~ 436 (453)
.+..+|+||+||+||.++.|.|++++.+.+ ....++-++.+++... -..-.+.+|.-+
T Consensus 891 fglaq~~Qr~GRvGR~g~~g~a~ll~~~~~~~~~~~~~rl~~~~~~~~lg~gf~~a~~dl~~r 953 (1147)
T PRK10689 891 FGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIR 953 (1147)
T ss_pred CCHHHHHHHhhccCCCCCceEEEEEeCCCcccCHHHHHHHHHHHHhcCCcchHHHHHHHHHhc
Confidence 356789999999999999999999886542 3344444455554433 333344444433
|
|
| >TIGR00643 recG ATP-dependent DNA helicase RecG | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-37 Score=316.34 Aligned_cols=299 Identities=21% Similarity=0.256 Sum_probs=219.5
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHhcC------CcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCC
Q psy9620 122 DYVLKEVKRQGFDRPTPIQAQGWPIAMSG------SNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPT 195 (453)
Q Consensus 122 ~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g------~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt 195 (453)
..+.+.++.++| +||++|.++|+.++++ .+.+++|+||||||++|++|++..+. .+.+++|++||
T Consensus 223 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~--------~g~qvlilaPT 293 (630)
T TIGR00643 223 ELLTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIE--------AGYQVALMAPT 293 (630)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHH--------cCCcEEEECCH
Confidence 344556677789 8999999999999865 25899999999999999999998774 35679999999
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEEEeCCccCCCC----------------------------------------------
Q psy9620 196 RELAQQIQEVARDFGSSTYLRSTCVYGGASKGPQ---------------------------------------------- 229 (453)
Q Consensus 196 r~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~---------------------------------------------- 229 (453)
++||.|+++.+++++...++++.+++|+......
T Consensus 294 ~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~~~~l~lvVIDEaH~fg~~q 373 (630)
T TIGR00643 294 EILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVEFKRLALVIIDEQHRFGVEQ 373 (630)
T ss_pred HHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccccccccceEEEechhhccHHH
Confidence 9999999999999988888999999988653210
Q ss_pred --------C---CceEEEEeccCcHHHHHHHHHhhccceEEEecccccccCccceeEEEEccccchhhhHHHHHHhhhcC
Q psy9620 230 --------P---DRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSK 298 (453)
Q Consensus 230 --------~---~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~ 298 (453)
. ..++++||||+.+....+.. ..+.....+.... .....+...+ .... ....+...+.... .
T Consensus 374 r~~l~~~~~~~~~~~~l~~SATp~prtl~l~~--~~~l~~~~i~~~p-~~r~~i~~~~--~~~~-~~~~~~~~i~~~l-~ 446 (630)
T TIGR00643 374 RKKLREKGQGGFTPHVLVMSATPIPRTLALTV--YGDLDTSIIDELP-PGRKPITTVL--IKHD-EKDIVYEFIEEEI-A 446 (630)
T ss_pred HHHHHHhcccCCCCCEEEEeCCCCcHHHHHHh--cCCcceeeeccCC-CCCCceEEEE--eCcc-hHHHHHHHHHHHH-H
Confidence 2 68899999997654333221 1111111111111 0111222222 1222 2233444443322 2
Q ss_pred CCCcEEEEEcch--------hHHHHHHHHHHhc--CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCC
Q psy9620 299 DENKTIIFAETK--------RKVDKITKSIQNY--GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDD 368 (453)
Q Consensus 299 ~~~~~lVF~~s~--------~~~~~l~~~L~~~--~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~ 368 (453)
...+++|||+.. ..++.+++.|.+. ++.+..+||+|++.+|..++++|++|+.+|||||+++++|||+|+
T Consensus 447 ~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GvDiP~ 526 (630)
T TIGR00643 447 KGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVGVDVPN 526 (630)
T ss_pred hCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeecCcccCC
Confidence 356899999876 4566777777753 678999999999999999999999999999999999999999999
Q ss_pred CcEEEEcCCCC-ChhHHHHhhhcccCCCCcceEEEEEcCCChHHHHHHHHHHHhcCCCCChHHHHHHhh
Q psy9620 369 VKFVINFDYPN-NSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDLIDVLTESNHPVDPKLSALASR 436 (453)
Q Consensus 369 v~~VI~~d~p~-s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~v~~~l~~~~~~ 436 (453)
+++||+++.|. +.+.|+||+||+||.+..|.|++++.........+.++.+.....-..-...++.-+
T Consensus 527 v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~~~~~~~~~~~rl~~~~~~~dgf~iae~dl~~R 595 (630)
T TIGR00643 527 ATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVYKNPKSESAKKRLRVMADTLDGFVIAEEDLELR 595 (630)
T ss_pred CcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEECCCCCHHHHHHHHHHHhhcccHHHHHHHHhcC
Confidence 99999999986 688899999999999999999999954444445555667766555444344455444
|
|
| >TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-37 Score=317.12 Aligned_cols=262 Identities=18% Similarity=0.199 Sum_probs=197.9
Q ss_pred CCCCCCCHHHHHHHHHHhcCC-cEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEE-EcCCHHHHHHHHHHHHH
Q psy9620 131 QGFDRPTPIQAQGWPIAMSGS-NMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLV-LAPTRELAQQIQEVARD 208 (453)
Q Consensus 131 ~g~~~~~~~Q~~~i~~i~~g~-d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vli-l~Ptr~La~q~~~~~~~ 208 (453)
.||. |+|+|.++++.+++|+ ++++++|||||||.++.++++.. ... ...++.|| ++|||+|+.|+++.+.+
T Consensus 12 ~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~-~~~-----~~~~~rLv~~vPtReLa~Qi~~~~~~ 84 (844)
T TIGR02621 12 HGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAV-EIG-----AKVPRRLVYVVNRRTVVDQVTEEAEK 84 (844)
T ss_pred hCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccc-ccc-----ccccceEEEeCchHHHHHHHHHHHHH
Confidence 3896 9999999999999998 57778999999999776555522 111 23455665 66999999999999998
Q ss_pred hcCCC-----------------------CceEEEEeCCccCCCC------------------------------------
Q psy9620 209 FGSST-----------------------YLRSTCVYGGASKGPQ------------------------------------ 229 (453)
Q Consensus 209 ~~~~~-----------------------~~~~~~~~gg~~~~~~------------------------------------ 229 (453)
+++.. .+++.+++||.+...+
T Consensus 85 ~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D~i~sr~L~~gYg~~~~~~pi 164 (844)
T TIGR02621 85 IGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVDMIGSRLLFSGYGCGFKSRPL 164 (844)
T ss_pred HHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHHHHcCCccccccccccccccc
Confidence 87644 4788999999765432
Q ss_pred ------------------------------C---------CceEEEEeccCcHHHHHHHHHhhccceEEEecccccccCc
Q psy9620 230 ------------------------------P---------DRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANH 270 (453)
Q Consensus 230 ------------------------------~---------~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (453)
. ++|+++||||++.++.++...++.++..+.+...... ..
T Consensus 165 ~ag~L~~v~~LVLDEADLd~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~~~l~-a~ 243 (844)
T TIGR02621 165 HAGFLGQDALIVHDEAHLEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKHPVLKKRLA-AK 243 (844)
T ss_pred hhhhhccceEEEEehhhhccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCceeeccccccc-cc
Confidence 1 1599999999999888888888777665555433322 23
Q ss_pred cceeEEEEccccchhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHH-----HHHHH
Q psy9620 271 NIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERD-----YVLKE 345 (453)
Q Consensus 271 ~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~-----~~~~~ 345 (453)
.+.+.+ ......+...+...+..+......++||||||++.|+.+++.|...++ ..+||+|++.+|+ .++++
T Consensus 244 ki~q~v-~v~~e~Kl~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~~~il~~ 320 (844)
T TIGR02621 244 KIVKLV-PPSDEKFLSTMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVKKEIFNR 320 (844)
T ss_pred ceEEEE-ecChHHHHHHHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHHHHHHHH
Confidence 334432 222333433444433333334457899999999999999999998876 8899999999999 88999
Q ss_pred Hhc----CC-------CcEEEEeccCccCCCCCCCcEEEEcCCCCChhHHHHhhhcccCCCCcc-eEEEEEcC
Q psy9620 346 FRN----GR-------AGILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTG-TSYTFFTQ 406 (453)
Q Consensus 346 f~~----g~-------~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g-~~~~~~~~ 406 (453)
|++ +. .+|||||+++++||||+. ++||++..| ++.|+||+||+||.|..+ ..+.+++.
T Consensus 321 Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~~~i~vv~~ 390 (844)
T TIGR02621 321 FLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQACQIAVVHL 390 (844)
T ss_pred HhccccccccccccccceEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCCceEEEEee
Confidence 987 44 689999999999999986 889998877 799999999999998754 33555543
|
This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs. |
| >COG1201 Lhr Lhr-like helicases [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-37 Score=312.88 Aligned_cols=283 Identities=24% Similarity=0.297 Sum_probs=227.3
Q ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHH
Q psy9620 119 NFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTREL 198 (453)
Q Consensus 119 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~L 198 (453)
-|++.+.+.+++. |..|||.|.+|||.+.+|+|+|++||||||||+++.+|++..+.......+..+..+|+|+|.|+|
T Consensus 7 ~l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkAL 85 (814)
T COG1201 7 ILDPRVREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKAL 85 (814)
T ss_pred hcCHHHHHHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHH
Confidence 4788999999988 999999999999999999999999999999999999999999988743334467899999999999
Q ss_pred HHHHHHHHHHhcCCCCceEEEEeCCccCCCC-------------------------------------------------
Q psy9620 199 AQQIQEVARDFGSSTYLRSTCVYGGASKGPQ------------------------------------------------- 229 (453)
Q Consensus 199 a~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~------------------------------------------------- 229 (453)
..++...+...+...++.+.+.+|+++....
T Consensus 86 n~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sK 165 (814)
T COG1201 86 NNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESK 165 (814)
T ss_pred HHHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhccc
Confidence 9999999999999999999999998876543
Q ss_pred ----------------CCceEEEEeccCcHHHHHHHHHhhccceEEEecccccccCccceeEEEEcccc-----chhhhH
Q psy9620 230 ----------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEH-----EKENKL 288 (453)
Q Consensus 230 ----------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-----~k~~~l 288 (453)
.+.|.+.+|||.. +....++++......+.+...... ...+..+...... .....+
T Consensus 166 RG~~Lsl~LeRL~~l~~~~qRIGLSATV~-~~~~varfL~g~~~~~~Iv~~~~~--k~~~i~v~~p~~~~~~~~~~~~~~ 242 (814)
T COG1201 166 RGVQLALSLERLRELAGDFQRIGLSATVG-PPEEVAKFLVGFGDPCEIVDVSAA--KKLEIKVISPVEDLIYDEELWAAL 242 (814)
T ss_pred cchhhhhhHHHHHhhCcccEEEeehhccC-CHHHHHHHhcCCCCceEEEEcccC--CcceEEEEecCCccccccchhHHH
Confidence 5789999999996 455666666544211111111111 2222222211111 122333
Q ss_pred HHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcC-CeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCC
Q psy9620 289 FGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYG-WAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVD 367 (453)
Q Consensus 289 ~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~-~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip 367 (453)
...+.++... ...+|||+||+..++.++..|.... ..+..|||.++.++|..++++|++|+.+++|||+.++-|||+.
T Consensus 243 ~~~i~~~v~~-~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDiG 321 (814)
T COG1201 243 YERIAELVKK-HRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDIG 321 (814)
T ss_pred HHHHHHHHhh-cCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhccccC
Confidence 3444444333 3489999999999999999999886 8999999999999999999999999999999999999999999
Q ss_pred CCcEEEEcCCCCChhHHHHhhhcccCC-CCcceEEEEEcC
Q psy9620 368 DVKFVINFDYPNNSEDYIHRIGRTGRS-DNTGTSYTFFTQ 406 (453)
Q Consensus 368 ~v~~VI~~d~p~s~~~y~qr~GRagR~-g~~g~~~~~~~~ 406 (453)
+|+.|||+..|.++..++||+||+|+. +...+++++...
T Consensus 322 ~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~ 361 (814)
T COG1201 322 DIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAED 361 (814)
T ss_pred CceEEEEeCCcHHHHHHhHhccccccccCCcccEEEEecC
Confidence 999999999999999999999999976 555677777665
|
|
| >PRK01172 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=319.95 Aligned_cols=276 Identities=20% Similarity=0.270 Sum_probs=206.5
Q ss_pred cccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEc
Q psy9620 114 EFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLA 193 (453)
Q Consensus 114 ~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~ 193 (453)
+|++++|++.+++.+.+.+|. ++++|.++++.+++++|++++||||||||+++.++++..+.. +.++||++
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~--------~~k~v~i~ 72 (674)
T PRK01172 2 KISDLGYDDEFLNLFTGNDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLA--------GLKSIYIV 72 (674)
T ss_pred cHhhcCCCHHHHHHHhhCCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHh--------CCcEEEEe
Confidence 578899999999999999985 999999999999999999999999999999999999887753 35699999
Q ss_pred CCHHHHHHHHHHHHHhcCCCCceEEEEeCCccCCCC--------------------------------------------
Q psy9620 194 PTRELAQQIQEVARDFGSSTYLRSTCVYGGASKGPQ-------------------------------------------- 229 (453)
Q Consensus 194 Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~-------------------------------------------- 229 (453)
|+++||.|+++.++++. ..++++...+|+......
T Consensus 73 P~raLa~q~~~~~~~l~-~~g~~v~~~~G~~~~~~~~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~d~~ 151 (674)
T PRK01172 73 PLRSLAMEKYEELSRLR-SLGMRVKISIGDYDDPPDFIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIGDED 151 (674)
T ss_pred chHHHHHHHHHHHHHHh-hcCCeEEEEeCCCCCChhhhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhccCCC
Confidence 99999999999998864 356777777775443211
Q ss_pred ----------------CCceEEEEeccCcHHHHHHHHHhhccceEEEecccccccCccceeEEE-----Ecc-ccchhhh
Q psy9620 230 ----------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVE-----VCA-EHEKENK 287 (453)
Q Consensus 230 ----------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-----~~~-~~~k~~~ 287 (453)
++.|+|++|||++. ..++++++....+..... . ..+...+. ... .......
T Consensus 152 rg~~le~ll~~~~~~~~~~riI~lSATl~n-~~~la~wl~~~~~~~~~r----~--vpl~~~i~~~~~~~~~~~~~~~~~ 224 (674)
T PRK01172 152 RGPTLETVLSSARYVNPDARILALSATVSN-ANELAQWLNASLIKSNFR----P--VPLKLGILYRKRLILDGYERSQVD 224 (674)
T ss_pred ccHHHHHHHHHHHhcCcCCcEEEEeCccCC-HHHHHHHhCCCccCCCCC----C--CCeEEEEEecCeeeeccccccccc
Confidence 46799999999964 556666543222111100 0 01110000 010 1111112
Q ss_pred HHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhc-------------------------CCeEEEEcCCCCHHHHHHH
Q psy9620 288 LFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNY-------------------------GWAAVGIHGDKSQQERDYV 342 (453)
Q Consensus 288 l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~-------------------------~~~~~~~h~~~~~~~r~~~ 342 (453)
+..++.... ...+++||||++++.|+.++..|... ...+.++|++|++++|..+
T Consensus 225 ~~~~i~~~~-~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~v 303 (674)
T PRK01172 225 INSLIKETV-NDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFI 303 (674)
T ss_pred HHHHHHHHH-hCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHH
Confidence 334444332 23579999999999999999988653 1247889999999999999
Q ss_pred HHHHhcCCCcEEEEeccCccCCCCCCCcEEEEcCC---------CCChhHHHHhhhcccCCCC--cceEEEEEcCCC
Q psy9620 343 LKEFRNGRAGILVATDVAARGLDVDDVKFVINFDY---------PNNSEDYIHRIGRTGRSDN--TGTSYTFFTQQN 408 (453)
Q Consensus 343 ~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~---------p~s~~~y~qr~GRagR~g~--~g~~~~~~~~~~ 408 (453)
++.|++|.++|||||+++++|+|+|+..+|| .|. |.+..+|.||+|||||.|. .|.+++++...+
T Consensus 304 e~~f~~g~i~VLvaT~~la~Gvnipa~~VII-~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~~ 379 (674)
T PRK01172 304 EEMFRNRYIKVIVATPTLAAGVNLPARLVIV-RDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASPA 379 (674)
T ss_pred HHHHHcCCCeEEEecchhhccCCCcceEEEE-cCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCcc
Confidence 9999999999999999999999999875544 332 4578899999999999984 577888876543
|
|
| >PHA02653 RNA helicase NPH-II; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-36 Score=307.79 Aligned_cols=263 Identities=16% Similarity=0.202 Sum_probs=195.5
Q ss_pred HHHHHHHHHHhcCCcEEEEecCCCcchhh---------hhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHH
Q psy9620 138 PIQAQGWPIAMSGSNMVGVAQTGSGKTLA---------YMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARD 208 (453)
Q Consensus 138 ~~Q~~~i~~i~~g~d~li~a~TGsGKT~~---------~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~ 208 (453)
.+|+++++.+++++++|++|+||||||.+ |++|.+..+.... .....+.++|++||||||.|+...+.+
T Consensus 167 ~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~--~~~~~~~ilvt~PrreLa~qi~~~i~~ 244 (675)
T PHA02653 167 DVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKID--PNFIERPIVLSLPRVALVRLHSITLLK 244 (675)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcc--cccCCcEEEEECcHHHHHHHHHHHHHH
Confidence 47999999999999999999999999987 4455554443211 012356799999999999999998876
Q ss_pred hcCC---CCceEEEEeCCccCC----C----C-------------------------------------------CCceE
Q psy9620 209 FGSS---TYLRSTCVYGGASKG----P----Q-------------------------------------------PDRQV 234 (453)
Q Consensus 209 ~~~~---~~~~~~~~~gg~~~~----~----~-------------------------------------------~~~q~ 234 (453)
.... .+..+.+.+|+.... . . ..+|+
T Consensus 245 ~vg~~~~~g~~v~v~~Gg~~~~~~~t~~k~~~Ilv~T~~L~l~~L~~v~~VVIDEaHEr~~~~DllL~llk~~~~~~rq~ 324 (675)
T PHA02653 245 SLGFDEIDGSPISLKYGSIPDELINTNPKPYGLVFSTHKLTLNKLFDYGTVIIDEVHEHDQIGDIIIAVARKHIDKIRSL 324 (675)
T ss_pred HhCccccCCceEEEEECCcchHHhhcccCCCCEEEEeCcccccccccCCEEEccccccCccchhHHHHHHHHhhhhcCEE
Confidence 4322 244556666665421 0 0 23599
Q ss_pred EEEeccCcHHHHHHHHHhhccceEEEecccccccCccceeEEEEccc---------cchhhhHHHHHHhhhcCCCCcEEE
Q psy9620 235 LMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAE---------HEKENKLFGLLNDISSKDENKTII 305 (453)
Q Consensus 235 v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---------~~k~~~l~~ll~~~~~~~~~~~lV 305 (453)
++||||++.++..+ ..++.++..+.+... ....+++.+..... ......+...+........+.+||
T Consensus 325 ILmSATl~~dv~~l-~~~~~~p~~I~I~gr---t~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~L~~~~~~~~g~iLV 400 (675)
T PHA02653 325 FLMTATLEDDRDRI-KEFFPNPAFVHIPGG---TLFPISEVYVKNKYNPKNKRAYIEEEKKNIVTALKKYTPPKGSSGIV 400 (675)
T ss_pred EEEccCCcHhHHHH-HHHhcCCcEEEeCCC---cCCCeEEEEeecCcccccchhhhHHHHHHHHHHHHHhhcccCCcEEE
Confidence 99999999888776 578888777766432 12334444322110 011122233333222223468999
Q ss_pred EEcchhHHHHHHHHHHhc--CCeEEEEcCCCCHHHHHHHHHHH-hcCCCcEEEEeccCccCCCCCCCcEEEEcC---CCC
Q psy9620 306 FAETKRKVDKITKSIQNY--GWAAVGIHGDKSQQERDYVLKEF-RNGRAGILVATDVAARGLDVDDVKFVINFD---YPN 379 (453)
Q Consensus 306 F~~s~~~~~~l~~~L~~~--~~~~~~~h~~~~~~~r~~~~~~f-~~g~~~vLvaT~~~~~GiDip~v~~VI~~d---~p~ 379 (453)
||+++.+|+.+++.|... ++.+..+||+|++. ++++++| ++|+.+|||||+++++|||||+|++||++| .|.
T Consensus 401 Flpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGIDIp~V~~VID~G~~k~p~ 478 (675)
T PHA02653 401 FVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSVTIRNATHVYDTGRVYVPE 478 (675)
T ss_pred EECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhccccccCeeEEEECCCccCCC
Confidence 999999999999999987 68999999999975 5677787 789999999999999999999999999999 565
Q ss_pred ---------ChhHHHHhhhcccCCCCcceEEEEEcCCCh
Q psy9620 380 ---------NSEDYIHRIGRTGRSDNTGTSYTFFTQQNS 409 (453)
Q Consensus 380 ---------s~~~y~qr~GRagR~g~~g~~~~~~~~~~~ 409 (453)
|.++|+||+|||||. .+|.|+.|+++++.
T Consensus 479 ~~~g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~~ 516 (675)
T PHA02653 479 PFGGKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDLL 516 (675)
T ss_pred cccCcccccCHHHHHHhccCcCCC-CCCeEEEEECHHHh
Confidence 888999999999999 89999999998764
|
|
| >PRK12898 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-36 Score=301.15 Aligned_cols=260 Identities=19% Similarity=0.199 Sum_probs=217.1
Q ss_pred CCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhcC
Q psy9620 132 GFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGS 211 (453)
Q Consensus 132 g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~~ 211 (453)
|. .|+++|..+++.++.|+ |+.+.||+|||++|.+|++.... .++.|+||+||++||.|.++++..+..
T Consensus 101 g~-~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al--------~G~~v~VvTptreLA~qdae~~~~l~~ 169 (656)
T PRK12898 101 GQ-RHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAAL--------AGLPVHVITVNDYLAERDAELMRPLYE 169 (656)
T ss_pred CC-CCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhh--------cCCeEEEEcCcHHHHHHHHHHHHHHHh
Confidence 66 89999999999999999 99999999999999999998754 366799999999999999999999999
Q ss_pred CCCceEEEEeCCccCCCC--------------------------------------------------------------
Q psy9620 212 STYLRSTCVYGGASKGPQ-------------------------------------------------------------- 229 (453)
Q Consensus 212 ~~~~~~~~~~gg~~~~~~-------------------------------------------------------------- 229 (453)
..++++.+++|+.+....
T Consensus 170 ~lGlsv~~i~gg~~~~~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~aIvD 249 (656)
T PRK12898 170 ALGLTVGCVVEDQSPDERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHFAIVD 249 (656)
T ss_pred hcCCEEEEEeCCCCHHHHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccceeEee
Confidence 999999999888542100
Q ss_pred --------------------------------------------------------------------------------
Q psy9620 230 -------------------------------------------------------------------------------- 229 (453)
Q Consensus 230 -------------------------------------------------------------------------------- 229 (453)
T Consensus 250 EvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~~~~~~~~~ 329 (656)
T PRK12898 250 EADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLPPAWRGAVR 329 (656)
T ss_pred cccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcchhhcccchH
Confidence
Q ss_pred -----------------------------------------------------------------------------CCc
Q psy9620 230 -----------------------------------------------------------------------------PDR 232 (453)
Q Consensus 230 -----------------------------------------------------------------------------~~~ 232 (453)
.-.
T Consensus 330 ~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q~~Fr~Y~ 409 (656)
T PRK12898 330 REELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRFFRRYL 409 (656)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHHHHHHhhH
Confidence 223
Q ss_pred eEEEEeccCcHHHHHHHHHhhccceEEEecccccccCccceeEEEEccccchhhhHHHHHHhhhcCCCCcEEEEEcchhH
Q psy9620 233 QVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRK 312 (453)
Q Consensus 233 q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~ 312 (453)
++..||+|.+....++.+.|..+++.+...... .....+.+..+...+|...|..++..+.. ...++||||+|++.
T Consensus 410 kl~GmTGTa~~~~~El~~~y~l~vv~IPt~kp~---~r~~~~~~v~~t~~~K~~aL~~~i~~~~~-~~~pvLIft~t~~~ 485 (656)
T PRK12898 410 RLAGMTGTAREVAGELWSVYGLPVVRIPTNRPS---QRRHLPDEVFLTAAAKWAAVAARVRELHA-QGRPVLVGTRSVAA 485 (656)
T ss_pred HHhcccCcChHHHHHHHHHHCCCeEEeCCCCCc---cceecCCEEEeCHHHHHHHHHHHHHHHHh-cCCCEEEEeCcHHH
Confidence 567899999988888888888777665544332 22233445556667788888887776532 34689999999999
Q ss_pred HHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCC---CCc-----EEEEcCCCCChhHH
Q psy9620 313 VDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVD---DVK-----FVINFDYPNNSEDY 384 (453)
Q Consensus 313 ~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip---~v~-----~VI~~d~p~s~~~y 384 (453)
++.++..|...++++..+|+.+. +|+..+..|+.+...|+||||+++||+||+ +|. +||++++|.|...|
T Consensus 486 se~L~~~L~~~gi~~~~Lhg~~~--~rE~~ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y 563 (656)
T PRK12898 486 SERLSALLREAGLPHQVLNAKQD--AEEAAIVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILTERHDSARID 563 (656)
T ss_pred HHHHHHHHHHCCCCEEEeeCCcH--HHHHHHHHHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEEcCCCCCHHHH
Confidence 99999999999999999999855 555666667777778999999999999999 776 99999999999999
Q ss_pred HHhhhcccCCCCcceEEEEEcCCC
Q psy9620 385 IHRIGRTGRSDNTGTSYTFFTQQN 408 (453)
Q Consensus 385 ~qr~GRagR~g~~g~~~~~~~~~~ 408 (453)
+||+|||||.|.+|.+++|++.+|
T Consensus 564 ~hr~GRTGRqG~~G~s~~~is~eD 587 (656)
T PRK12898 564 RQLAGRCGRQGDPGSYEAILSLED 587 (656)
T ss_pred HHhcccccCCCCCeEEEEEechhH
Confidence 999999999999999999999866
|
|
| >KOG0329|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-37 Score=263.90 Aligned_cols=274 Identities=28% Similarity=0.492 Sum_probs=232.8
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEE
Q psy9620 113 TEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVL 192 (453)
Q Consensus 113 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil 192 (453)
+-|.+.-|.|+|++++-.+||..|+.+|.++||-..-|-|++.+|..|.|||.+|.+..|+.+.... ....+|++
T Consensus 42 sgfrdfllkpellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiepv~-----g~vsvlvm 116 (387)
T KOG0329|consen 42 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVD-----GQVSVLVM 116 (387)
T ss_pred cchhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCCCC-----CeEEEEEE
Confidence 4577888999999999999999999999999999999999999999999999999999887764321 24579999
Q ss_pred cCCHHHHHHHHHHHHHhcCC-CCceEEEEeCCccCCCC------------------------------------------
Q psy9620 193 APTRELAQQIQEVARDFGSS-TYLRSTCVYGGASKGPQ------------------------------------------ 229 (453)
Q Consensus 193 ~Ptr~La~q~~~~~~~~~~~-~~~~~~~~~gg~~~~~~------------------------------------------ 229 (453)
|.|||||-|+..+...|.+. ..+++.+.+||......
T Consensus 117 chtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdk 196 (387)
T KOG0329|consen 117 CHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDK 196 (387)
T ss_pred eccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHH
Confidence 99999999999888887654 36899999999877654
Q ss_pred -------------------CCceEEEEeccCcHHHHHHHHHhhccceEEEecccccccCccceeEEEEccccchhhhHHH
Q psy9620 230 -------------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFG 290 (453)
Q Consensus 230 -------------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ 290 (453)
...|+++||||++.+++...+.|+.+|..+.++.......+.++|.+....+.+|..++.+
T Consensus 197 mle~lDMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~YvkLke~eKNrkl~d 276 (387)
T KOG0329|consen 197 MLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQYYVKLKENEKNRKLND 276 (387)
T ss_pred HHHHHHHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCchhhhccchhhhhhhhHHHHHHhhhhhhhhhhhhh
Confidence 6789999999999999999999999999998887766666788888888888999999999
Q ss_pred HHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCc
Q psy9620 291 LLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVK 370 (453)
Q Consensus 291 ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~ 370 (453)
+|+.+ +-++++||+.+... | + | ..+ ||||+++.||+||..|+
T Consensus 277 LLd~L---eFNQVvIFvKsv~R-------l--------------~----------f---~kr-~vat~lfgrgmdiervN 318 (387)
T KOG0329|consen 277 LLDVL---EFNQVVIFVKSVQR-------L--------------S----------F---QKR-LVATDLFGRGMDIERVN 318 (387)
T ss_pred hhhhh---hhcceeEeeehhhh-------h--------------h----------h---hhh-hHHhhhhccccCcccce
Confidence 98876 35689999988654 0 0 2 223 89999999999999999
Q ss_pred EEEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcCC-ChHHHHHHHHHHHhcCCCCChH
Q psy9620 371 FVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQ-NSRQAKDLIDVLTESNHPVDPK 429 (453)
Q Consensus 371 ~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~-~~~~~~~l~~~l~~~~~~v~~~ 429 (453)
.|||||+|.+.++|+||++||||.|..|.++.|+... +...+..+.+.++-...++|++
T Consensus 319 i~~NYdmp~~~DtYlHrv~rAgrfGtkglaitfvs~e~da~iLn~vqdRf~v~i~eLpde 378 (387)
T KOG0329|consen 319 IVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNPVQDRFEVNIKELPDE 378 (387)
T ss_pred eeeccCCCCCchHHHHHhhhhhccccccceeehhcchhhHHHhchhhHhhhccHhhcCcc
Confidence 9999999999999999999999999999999999864 4455566655555555555655
|
|
| >TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-33 Score=292.40 Aligned_cols=256 Identities=16% Similarity=0.243 Sum_probs=190.4
Q ss_pred HHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHH-HhcCCCCceE
Q psy9620 139 IQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVAR-DFGSSTYLRS 217 (453)
Q Consensus 139 ~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~-~~~~~~~~~~ 217 (453)
+-.+.+..+.+++++|++|+||||||++|.++++.... .++++||+.|||++|.|+++.+. .++...+..+
T Consensus 6 ~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~--------~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~V 77 (819)
T TIGR01970 6 VLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG--------IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTV 77 (819)
T ss_pred HHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc--------cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEE
Confidence 34456667778899999999999999999999987652 24579999999999999999885 4444444444
Q ss_pred EEEeCCccCCCC-------------------------------------------------------CCceEEEEeccCc
Q psy9620 218 TCVYGGASKGPQ-------------------------------------------------------PDRQVLMWSATWP 242 (453)
Q Consensus 218 ~~~~gg~~~~~~-------------------------------------------------------~~~q~v~~SAT~~ 242 (453)
...+.+...... .+.|+|+||||++
T Consensus 78 Gy~vr~~~~~s~~t~I~v~T~G~Llr~l~~d~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlIlmSATl~ 157 (819)
T TIGR01970 78 GYRVRGENKVSRRTRLEVVTEGILTRMIQDDPELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKILAMSATLD 157 (819)
T ss_pred EEEEccccccCCCCcEEEECCcHHHHHHhhCcccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEEEEeCCCC
Confidence 333222211100 5679999999998
Q ss_pred HHHHHHHHHhhccceEEEecccccccCccceeEEEEccccchh-hhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHH
Q psy9620 243 REVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKE-NKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQ 321 (453)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~-~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~ 321 (453)
.+. ...++.++..+.+.... ..++..+......++. ..+...+..+.....+.+||||+++.+++.+++.|.
T Consensus 158 ~~~---l~~~l~~~~vI~~~gr~----~pVe~~y~~~~~~~~~~~~v~~~l~~~l~~~~g~iLVFlpg~~eI~~l~~~L~ 230 (819)
T TIGR01970 158 GER---LSSLLPDAPVVESEGRS----FPVEIRYLPLRGDQRLEDAVSRAVEHALASETGSILVFLPGQAEIRRVQEQLA 230 (819)
T ss_pred HHH---HHHHcCCCcEEEecCcc----eeeeeEEeecchhhhHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHH
Confidence 753 35666655444433221 2234443333222221 122233333333346789999999999999999998
Q ss_pred h---cCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEEEcCCCC------------------C
Q psy9620 322 N---YGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVINFDYPN------------------N 380 (453)
Q Consensus 322 ~---~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~------------------s 380 (453)
+ .++.+..+||+|++++|..+++.|++|+.+||||||++++|||||+|++||++++|+ |
T Consensus 231 ~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iS 310 (819)
T TIGR01970 231 ERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLETVRIS 310 (819)
T ss_pred hhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCceeeEEEEC
Confidence 7 478999999999999999999999999999999999999999999999999999875 3
Q ss_pred hhHHHHhhhcccCCCCcceEEEEEcCCChH
Q psy9620 381 SEDYIHRIGRTGRSDNTGTSYTFFTQQNSR 410 (453)
Q Consensus 381 ~~~y~qr~GRagR~g~~g~~~~~~~~~~~~ 410 (453)
.++|+||+|||||. .+|.||.|+++.+..
T Consensus 311 kasa~QR~GRAGR~-~~G~cyrL~t~~~~~ 339 (819)
T TIGR01970 311 QASATQRAGRAGRL-EPGVCYRLWSEEQHQ 339 (819)
T ss_pred HHHHHhhhhhcCCC-CCCEEEEeCCHHHHH
Confidence 45699999999999 899999999976543
|
This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing. |
| >PRK11664 ATP-dependent RNA helicase HrpB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-33 Score=291.87 Aligned_cols=254 Identities=15% Similarity=0.238 Sum_probs=190.7
Q ss_pred HHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHH-HhcCCCCceEE
Q psy9620 140 QAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVAR-DFGSSTYLRST 218 (453)
Q Consensus 140 Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~-~~~~~~~~~~~ 218 (453)
-.+.+..+.++++++++|+||||||++|.++++.... ...++||++|||++|.|+++.+. .++...+..+.
T Consensus 10 ~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~--------~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VG 81 (812)
T PRK11664 10 LPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGG--------INGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVG 81 (812)
T ss_pred HHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCC--------cCCeEEEECChHHHHHHHHHHHHHHhCcccCceEE
Confidence 3455666778899999999999999999999886532 12479999999999999999885 44555555555
Q ss_pred EEeCCccCCCC-------------------------------------------------------CCceEEEEeccCcH
Q psy9620 219 CVYGGASKGPQ-------------------------------------------------------PDRQVLMWSATWPR 243 (453)
Q Consensus 219 ~~~gg~~~~~~-------------------------------------------------------~~~q~v~~SAT~~~ 243 (453)
..+++...... .+.|+++||||++.
T Consensus 82 y~vr~~~~~~~~t~I~v~T~G~Llr~l~~d~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlilmSATl~~ 161 (812)
T PRK11664 82 YRMRAESKVGPNTRLEVVTEGILTRMIQRDPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDN 161 (812)
T ss_pred EEecCccccCCCCcEEEEChhHHHHHHhhCCCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEEEEecCCCH
Confidence 44444321110 46799999999986
Q ss_pred HHHHHHHHhhccceEEEecccccccCccceeEEEEccccchhh-hHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHh
Q psy9620 244 EVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKEN-KLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQN 322 (453)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~-~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~ 322 (453)
+. ...++.+...+.+.... ..+++.+......++.. .+...+..+.....+.+||||+++.+++.+++.|..
T Consensus 162 ~~---l~~~~~~~~~I~~~gr~----~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~~~g~iLVFlpg~~ei~~l~~~L~~ 234 (812)
T PRK11664 162 DR---LQQLLPDAPVIVSEGRS----FPVERRYQPLPAHQRFDEAVARATAELLRQESGSLLLFLPGVGEIQRVQEQLAS 234 (812)
T ss_pred HH---HHHhcCCCCEEEecCcc----ccceEEeccCchhhhHHHHHHHHHHHHHHhCCCCEEEEcCCHHHHHHHHHHHHH
Confidence 52 34666655444433221 22444443333322222 222334444334467999999999999999999987
Q ss_pred ---cCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEEEcCCCC------------------Ch
Q psy9620 323 ---YGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVINFDYPN------------------NS 381 (453)
Q Consensus 323 ---~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~------------------s~ 381 (453)
.++.+..+||+|++.+|..+++.|++|+.+|||||+++++|||||+|++||++++++ |.
T Consensus 235 ~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSk 314 (812)
T PRK11664 235 RVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQRISQ 314 (812)
T ss_pred hccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCcceeEEEeech
Confidence 578899999999999999999999999999999999999999999999999988764 34
Q ss_pred hHHHHhhhcccCCCCcceEEEEEcCCCh
Q psy9620 382 EDYIHRIGRTGRSDNTGTSYTFFTQQNS 409 (453)
Q Consensus 382 ~~y~qr~GRagR~g~~g~~~~~~~~~~~ 409 (453)
++|.||+|||||. .+|.||.++++.+.
T Consensus 315 asa~QR~GRaGR~-~~G~cyrL~t~~~~ 341 (812)
T PRK11664 315 ASMTQRAGRAGRL-EPGICLHLYSKEQA 341 (812)
T ss_pred hhhhhhccccCCC-CCcEEEEecCHHHH
Confidence 6899999999999 79999999997643
|
|
| >PRK09751 putative ATP-dependent helicase Lhr; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-33 Score=300.74 Aligned_cols=241 Identities=23% Similarity=0.303 Sum_probs=174.7
Q ss_pred EEecCCCcchhhhhHHHHHHhhhcCCC-----CCCCCcEEEEEcCCHHHHHHHHHHHHHh-----------c-CCCCceE
Q psy9620 155 GVAQTGSGKTLAYMLPAIVHINHQSQL-----KPGDGPIVLVLAPTRELAQQIQEVARDF-----------G-SSTYLRS 217 (453)
Q Consensus 155 i~a~TGsGKT~~~~l~~l~~~~~~~~~-----~~~~~~~vlil~Ptr~La~q~~~~~~~~-----------~-~~~~~~~ 217 (453)
|+||||||||++|++|+|..+...... ....++++|||+|+++|+.|+.+.++.. + ...++++
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 579999999999999999998764311 1234689999999999999999988641 1 1346888
Q ss_pred EEEeCCccCCCC-----------------------------------------------------------------CCc
Q psy9620 218 TCVYGGASKGPQ-----------------------------------------------------------------PDR 232 (453)
Q Consensus 218 ~~~~gg~~~~~~-----------------------------------------------------------------~~~ 232 (453)
...+|+++...+ .+.
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~~~ 160 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSA 160 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCCCC
Confidence 889998754331 467
Q ss_pred eEEEEeccCcHHHHHHHHHhhcc-ceEEEecccccccCccceeEEEEccccch----------------h-----hhHHH
Q psy9620 233 QVLMWSATWPREVQKLAEDFLDS-YIQINIGSLTLSANHNIQQVVEVCAEHEK----------------E-----NKLFG 290 (453)
Q Consensus 233 q~v~~SAT~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~k----------------~-----~~l~~ 290 (453)
|+|++|||+++ .+++++++..+ ++.+.. ... .....+... ....+..+ . .....
T Consensus 161 QrIgLSATI~n-~eevA~~L~g~~pv~Iv~-~~~-~r~~~l~v~-vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~ 236 (1490)
T PRK09751 161 QRIGLSATVRS-ASDVAAFLGGDRPVTVVN-PPA-MRHPQIRIV-VPVANMDDVSSVASGTGEDSHAGREGSIWPYIETG 236 (1490)
T ss_pred eEEEEEeeCCC-HHHHHHHhcCCCCEEEEC-CCC-CcccceEEE-EecCchhhccccccccccccchhhhhhhhHHHHHH
Confidence 99999999976 56666655432 444322 111 111122211 11111000 0 01112
Q ss_pred HHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcC---------------------------------CeEEEEcCCCCHH
Q psy9620 291 LLNDISSKDENKTIIFAETKRKVDKITKSIQNYG---------------------------------WAAVGIHGDKSQQ 337 (453)
Q Consensus 291 ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~---------------------------------~~~~~~h~~~~~~ 337 (453)
++..+. ...++||||||+..|+.++..|.+.. +.+..|||+|+++
T Consensus 237 il~~i~--~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSke 314 (1490)
T PRK09751 237 ILDEVL--RHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKE 314 (1490)
T ss_pred HHHHHh--cCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHH
Confidence 333332 35689999999999999999997531 1256899999999
Q ss_pred HHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEEEcCCCCChhHHHHhhhcccCC-CCcceEE
Q psy9620 338 ERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRS-DNTGTSY 401 (453)
Q Consensus 338 ~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~-g~~g~~~ 401 (453)
+|..+++.|++|++++||||+++++||||++|++||+++.|.++.+|+||+||+||. +..+.++
T Consensus 315 eR~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~~gg~s~gl 379 (1490)
T PRK09751 315 QRAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQVGGVSKGL 379 (1490)
T ss_pred HHHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCCCCCccEEE
Confidence 999999999999999999999999999999999999999999999999999999997 2234444
|
|
| >PRK09200 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=282.67 Aligned_cols=260 Identities=19% Similarity=0.223 Sum_probs=205.6
Q ss_pred CCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhcC
Q psy9620 132 GFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGS 211 (453)
Q Consensus 132 g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~~ 211 (453)
|. .|+++|..+++.+++|+ |+.+.||+|||++|++|++.... .++.|+|++||++||.|.++++..+..
T Consensus 76 g~-~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al--------~G~~v~VvTpt~~LA~qd~e~~~~l~~ 144 (790)
T PRK09200 76 GM-RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNAL--------EGKGVHLITVNDYLAKRDAEEMGQVYE 144 (790)
T ss_pred CC-CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHH--------cCCCeEEEeCCHHHHHHHHHHHHHHHh
Confidence 66 89999999999998887 99999999999999999986554 366799999999999999999999999
Q ss_pred CCCceEEEEeCCccCCCC--------------------------------------------------------------
Q psy9620 212 STYLRSTCVYGGASKGPQ-------------------------------------------------------------- 229 (453)
Q Consensus 212 ~~~~~~~~~~gg~~~~~~-------------------------------------------------------------- 229 (453)
..++++.++.|+.+...+
T Consensus 145 ~lGl~v~~i~g~~~~~~~r~~~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~tpliisg 224 (790)
T PRK09200 145 FLGLTVGLNFSDIDDASEKKAIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQTPLIISG 224 (790)
T ss_pred hcCCeEEEEeCCCCcHHHHHHhcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccCCCceeeeC
Confidence 999999999988761110
Q ss_pred --------------------------------------------------------------------------------
Q psy9620 230 -------------------------------------------------------------------------------- 229 (453)
Q Consensus 230 -------------------------------------------------------------------------------- 229 (453)
T Consensus 225 ~~~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~~~~~d~d 304 (790)
T PRK09200 225 KPRVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHVLFKRDVD 304 (790)
T ss_pred CCccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHHHHHhhcCCc
Confidence
Q ss_pred ---------------------------------------------------------CCceEEEEeccCcHHHHHHHHHh
Q psy9620 230 ---------------------------------------------------------PDRQVLMWSATWPREVQKLAEDF 252 (453)
Q Consensus 230 ---------------------------------------------------------~~~q~v~~SAT~~~~~~~~~~~~ 252 (453)
.-..+..||.|...+..++.+.|
T Consensus 305 YiV~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~~e~~~~Y 384 (790)
T PRK09200 305 YIVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEKEFFEVY 384 (790)
T ss_pred EEEECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHHHHHHHHh
Confidence 11245567777655444444444
Q ss_pred hccceEEEecccccccCccceeEEEEccccchhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcC
Q psy9620 253 LDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHG 332 (453)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~ 332 (453)
-.+.+.+ .......... .....+....+|...+...+.... ....++||||+|+..++.++..|...++++..+|+
T Consensus 385 ~l~v~~I--Pt~kp~~r~d-~~~~i~~~~~~K~~al~~~i~~~~-~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~ 460 (790)
T PRK09200 385 NMEVVQI--PTNRPIIRID-YPDKVFVTLDEKYKAVIEEVKERH-ETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNA 460 (790)
T ss_pred CCcEEEC--CCCCCccccc-CCCeEEcCHHHHHHHHHHHHHHHH-hcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEecC
Confidence 3332222 1111011111 112333455667777777776542 24679999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCC---CCCc-----EEEEcCCCCChhHHHHhhhcccCCCCcceEEEEE
Q psy9620 333 DKSQQERDYVLKEFRNGRAGILVATDVAARGLDV---DDVK-----FVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFF 404 (453)
Q Consensus 333 ~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDi---p~v~-----~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~ 404 (453)
.+.+.++..+...++.| +|+|||++++||+|| |+|. +||++++|.+...|+||+|||||.|.+|.+++|+
T Consensus 461 ~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~~~i 538 (790)
T PRK09200 461 KNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQFFI 538 (790)
T ss_pred CccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeEEEEE
Confidence 99998888888777766 799999999999999 6998 9999999999999999999999999999999999
Q ss_pred cCCC
Q psy9620 405 TQQN 408 (453)
Q Consensus 405 ~~~~ 408 (453)
+.+|
T Consensus 539 s~eD 542 (790)
T PRK09200 539 SLED 542 (790)
T ss_pred cchH
Confidence 9765
|
|
| >TIGR01587 cas3_core CRISPR-associated helicase Cas3 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-32 Score=264.46 Aligned_cols=244 Identities=22% Similarity=0.226 Sum_probs=170.0
Q ss_pred cEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhcCC-CCce--------------
Q psy9620 152 NMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGSS-TYLR-------------- 216 (453)
Q Consensus 152 d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~~~-~~~~-------------- 216 (453)
+++++||||||||++|++|++..+... ...+++|++|+++|+.|+++.+..++.. .++-
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~------~~~~ii~v~P~~~L~~q~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~ 74 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQ------KADRVIIALPTRATINAMYRRAKELFGSNLGLLHSSSSFKRIKEMGD 74 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhC------CCCeEEEEeehHHHHHHHHHHHHHHhCcccEEeeccHHHHHHhccCC
Confidence 589999999999999999999876432 3557999999999999999998887421 1100
Q ss_pred ----------------------EE-----------------------------EEeCCccCCC---------------CC
Q psy9620 217 ----------------------ST-----------------------------CVYGGASKGP---------------QP 230 (453)
Q Consensus 217 ----------------------~~-----------------------------~~~gg~~~~~---------------~~ 230 (453)
+. ++......-. ..
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~l~~~l~~l~~~ 154 (358)
T TIGR01587 75 SEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLALILAVLEVLKDN 154 (358)
T ss_pred chhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHHHHHHHHHHHHc
Confidence 00 0000000000 04
Q ss_pred CceEEEEeccCcHHHHHHHHHhhccceEEEecccccccCccceeEEEEc--cccchhhhHHHHHHhhhcCCCCcEEEEEc
Q psy9620 231 DRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVC--AEHEKENKLFGLLNDISSKDENKTIIFAE 308 (453)
Q Consensus 231 ~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~k~~~l~~ll~~~~~~~~~~~lVF~~ 308 (453)
+.|+++||||+|..+.+++..+............. ......+.+... ....+...+..++..+ ....++||||+
T Consensus 155 ~~~~i~~SATlp~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~--~~~~~~lVf~~ 230 (358)
T TIGR01587 155 DVPILLMSATLPKFLKEYAEKIGYVEFNEPLDLKE--ERRFERHRFIKIESDKVGEISSLERLLEFI--KKGGKIAIIVN 230 (358)
T ss_pred CCCEEEEecCchHHHHHHHhcCCCcccccCCCCcc--ccccccccceeeccccccCHHHHHHHHHHh--hCCCeEEEEEC
Confidence 68999999999977766665543321111111000 000111111111 1123444555555443 23579999999
Q ss_pred chhHHHHHHHHHHhcCC--eEEEEcCCCCHHHHHH----HHHHHhcCCCcEEEEeccCccCCCCCCCcEEEEcCCCCChh
Q psy9620 309 TKRKVDKITKSIQNYGW--AAVGIHGDKSQQERDY----VLKEFRNGRAGILVATDVAARGLDVDDVKFVINFDYPNNSE 382 (453)
Q Consensus 309 s~~~~~~l~~~L~~~~~--~~~~~h~~~~~~~r~~----~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~ 382 (453)
+++.|+.+++.|.+.+. .+..+||++++.+|.. +++.|++++.+|||||+++++|||++ +++||++..| .+
T Consensus 231 t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~~~~--~~ 307 (358)
T TIGR01587 231 TVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMITELAP--ID 307 (358)
T ss_pred CHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEEcCCC--HH
Confidence 99999999999988765 5899999999999976 48999999999999999999999995 8899998877 88
Q ss_pred HHHHhhhcccCCCCc----ceEEEEEcCCC
Q psy9620 383 DYIHRIGRTGRSDNT----GTSYTFFTQQN 408 (453)
Q Consensus 383 ~y~qr~GRagR~g~~----g~~~~~~~~~~ 408 (453)
+|+||+||+||.|+. |..++|....+
T Consensus 308 ~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~ 337 (358)
T TIGR01587 308 SLIQRLGRLHRYGRKNGENFEVYIITIAPE 337 (358)
T ss_pred HHHHHhccccCCCCCCCCCCeEEEEeecCC
Confidence 999999999998754 36777766544
|
This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model. |
| >PRK09401 reverse gyrase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-32 Score=291.12 Aligned_cols=239 Identities=20% Similarity=0.268 Sum_probs=188.5
Q ss_pred CCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhcC
Q psy9620 132 GFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGS 211 (453)
Q Consensus 132 g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~~ 211 (453)
|+ .|+++|.+++|.++.|+|++++||||+|||. |.++++..+.. .++++|||+||++|+.|+++.++.++.
T Consensus 78 G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~-f~l~~~~~l~~-------~g~~alIL~PTreLa~Qi~~~l~~l~~ 148 (1176)
T PRK09401 78 GS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTT-FGLVMSLYLAK-------KGKKSYIIFPTRLLVEQVVEKLEKFGE 148 (1176)
T ss_pred CC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHH-HHHHHHHHHHh-------cCCeEEEEeccHHHHHHHHHHHHHHhh
Confidence 77 8999999999999999999999999999995 55555544432 367899999999999999999999988
Q ss_pred CCCceEEEEeCCccC---------------CCC-----------------------------------------------
Q psy9620 212 STYLRSTCVYGGASK---------------GPQ----------------------------------------------- 229 (453)
Q Consensus 212 ~~~~~~~~~~gg~~~---------------~~~----------------------------------------------- 229 (453)
..++.+..++++... ..+
T Consensus 149 ~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~~l~~~~~~~lVvDEaD~~L~~~k~id~~l~~lG 228 (1176)
T PRK09401 149 KVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFDELPKKKFDFVFVDDVDAVLKSSKNIDKLLYLLG 228 (1176)
T ss_pred hcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccCEEEEEChHHhhhcccchhhHHHhCC
Confidence 877777776665321 011
Q ss_pred --------------C------------------------CceEEEEeccCcHH-HHHHHHHhhccceEEEecccccccCc
Q psy9620 230 --------------P------------------------DRQVLMWSATWPRE-VQKLAEDFLDSYIQINIGSLTLSANH 270 (453)
Q Consensus 230 --------------~------------------------~~q~v~~SAT~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (453)
. ..|++++|||+++. +.. .++.+...+.+.... ....
T Consensus 229 F~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~---~l~~~ll~~~v~~~~-~~~r 304 (1176)
T PRK09401 229 FSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRV---KLFRELLGFEVGSPV-FYLR 304 (1176)
T ss_pred CCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHH---HHhhccceEEecCcc-cccC
Confidence 0 47899999999864 332 233444445554443 2335
Q ss_pred cceeEEEEccccchhhhHHHHHHhhhcCCCCcEEEEEcchhH---HHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHh
Q psy9620 271 NIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRK---VDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFR 347 (453)
Q Consensus 271 ~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~---~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~ 347 (453)
++.+.+..+. ++...+..++..+ ..++||||+++.. |+.+++.|...++.+..+||+| ...+++|+
T Consensus 305 nI~~~yi~~~--~k~~~L~~ll~~l----~~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~~~l~~F~ 373 (1176)
T PRK09401 305 NIVDSYIVDE--DSVEKLVELVKRL----GDGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF-----ERKFEKFE 373 (1176)
T ss_pred CceEEEEEcc--cHHHHHHHHHHhc----CCCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH-----HHHHHHHH
Confidence 5666665444 5666677777654 3589999999887 9999999999999999999999 23459999
Q ss_pred cCCCcEEEE----eccCccCCCCCC-CcEEEEcCCCC------ChhHHHHhhhcccCC
Q psy9620 348 NGRAGILVA----TDVAARGLDVDD-VKFVINFDYPN------NSEDYIHRIGRTGRS 394 (453)
Q Consensus 348 ~g~~~vLva----T~~~~~GiDip~-v~~VI~~d~p~------s~~~y~qr~GRagR~ 394 (453)
+|+++|||| |++++||||+|+ |++|||||+|. ..+.|.||+||+...
T Consensus 374 ~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~~~ 431 (1176)
T PRK09401 374 EGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRLLSL 431 (1176)
T ss_pred CCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHHHHhh
Confidence 999999999 699999999999 89999999998 678899999998643
|
|
| >PHA02558 uvsW UvsW helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-31 Score=268.20 Aligned_cols=258 Identities=15% Similarity=0.155 Sum_probs=182.1
Q ss_pred CCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhcCC
Q psy9620 133 FDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGSS 212 (453)
Q Consensus 133 ~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~~~ 212 (453)
...|+++|.++++.++.+++.++++|||+|||+++...+. .+... ...++|||+||++|+.|+.+.+.+++..
T Consensus 112 ~~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~~-~~~~~------~~~~vLilvpt~eL~~Q~~~~l~~~~~~ 184 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLSR-YYLEN------YEGKVLIIVPTTSLVTQMIDDFVDYRLF 184 (501)
T ss_pred cCCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHH-HHHhc------CCCeEEEEECcHHHHHHHHHHHHHhccc
Confidence 3489999999999999999999999999999987644222 11211 2337999999999999999999998754
Q ss_pred CCceEEEEeCCccCCCC----------------------------------------------CCceEEEEeccCcHHHH
Q psy9620 213 TYLRSTCVYGGASKGPQ----------------------------------------------PDRQVLMWSATWPREVQ 246 (453)
Q Consensus 213 ~~~~~~~~~gg~~~~~~----------------------------------------------~~~q~v~~SAT~~~~~~ 246 (453)
....+..+.+|...... ..++++++|||++....
T Consensus 185 ~~~~~~~i~~g~~~~~~~~I~VaT~qsl~~~~~~~~~~~~~iIvDEaH~~~~~~~~~il~~~~~~~~~lGLTATp~~~~~ 264 (501)
T PHA02558 185 PREAMHKIYSGTAKDTDAPIVVSTWQSAVKQPKEWFDQFGMVIVDECHLFTGKSLTSIITKLDNCKFKFGLTGSLRDGKA 264 (501)
T ss_pred cccceeEEecCcccCCCCCEEEeeHHHHhhchhhhccccCEEEEEchhcccchhHHHHHHhhhccceEEEEeccCCCccc
Confidence 44445455555443211 35689999999865322
Q ss_pred HHH--HHhhccceEEEecccccccC-----c--------------------cceeEEE-EccccchhhhHHHHHHhhhcC
Q psy9620 247 KLA--EDFLDSYIQINIGSLTLSAN-----H--------------------NIQQVVE-VCAEHEKENKLFGLLNDISSK 298 (453)
Q Consensus 247 ~~~--~~~~~~~~~~~~~~~~~~~~-----~--------------------~i~~~~~-~~~~~~k~~~l~~ll~~~~~~ 298 (453)
... ..++. ++...+....+... . ...+.+. ......+...+..++..+. .
T Consensus 265 ~~~~~~~~fG-~i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Rn~~I~~~~~~~~-~ 342 (501)
T PHA02558 265 NILQYVGLFG-DIFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTKRNKWIANLALKLA-K 342 (501)
T ss_pred cHHHHHHhhC-CceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccHHHHHHHHHHHHHHH-h
Confidence 111 11111 11111110000000 0 0000000 0111122233344444443 2
Q ss_pred CCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEe-ccCccCCCCCCCcEEEEcCC
Q psy9620 299 DENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVAT-DVAARGLDVDDVKFVINFDY 377 (453)
Q Consensus 299 ~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT-~~~~~GiDip~v~~VI~~d~ 377 (453)
...++||||++.++++.|++.|...+.++..+||+|++.+|..+++.|++++..||||| +++++|+|+|++++||++++
T Consensus 343 ~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip~ld~vIl~~p 422 (501)
T PHA02558 343 KGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISIKNLHHVIFAHP 422 (501)
T ss_pred cCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceeccccccccccEEEEecC
Confidence 35689999999999999999999999999999999999999999999999999999999 89999999999999999999
Q ss_pred CCChhHHHHhhhcccCCCCcce
Q psy9620 378 PNNSEDYIHRIGRTGRSDNTGT 399 (453)
Q Consensus 378 p~s~~~y~qr~GRagR~g~~g~ 399 (453)
+.|...|+||+||++|.+....
T Consensus 423 ~~s~~~~~QriGR~~R~~~~K~ 444 (501)
T PHA02558 423 SKSKIIVLQSIGRVLRKHGSKS 444 (501)
T ss_pred CcchhhhhhhhhccccCCCCCc
Confidence 9999999999999999865443
|
|
| >KOG0351|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-32 Score=280.65 Aligned_cols=269 Identities=21% Similarity=0.330 Sum_probs=213.4
Q ss_pred HHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHH
Q psy9620 128 VKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVAR 207 (453)
Q Consensus 128 l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~ 207 (453)
...+|+..+++-|.++|..++.|+|+++.+|||.||++||++|++. .++.+|||.|.+.|++.+...+.
T Consensus 257 ~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l-----------~~gitvVISPL~SLm~DQv~~L~ 325 (941)
T KOG0351|consen 257 KEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALL-----------LGGVTVVISPLISLMQDQVTHLS 325 (941)
T ss_pred HHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeeccccc-----------cCCceEEeccHHHHHHHHHHhhh
Confidence 3456999999999999999999999999999999999999999985 34579999999999988766663
Q ss_pred HhcCCCCceEEEEeCCccCCCC----------------------------------------------------------
Q psy9620 208 DFGSSTYLRSTCVYGGASKGPQ---------------------------------------------------------- 229 (453)
Q Consensus 208 ~~~~~~~~~~~~~~gg~~~~~~---------------------------------------------------------- 229 (453)
. .+|....+.++.....+
T Consensus 326 ~----~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWg 401 (941)
T KOG0351|consen 326 K----KGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWG 401 (941)
T ss_pred h----cCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhc
Confidence 3 33555555554433211
Q ss_pred -----------------CCceEEEEeccCcHHHHHHHHHhhc--cceEEEecccccccCccceeEEEEccccchhhhHHH
Q psy9620 230 -----------------PDRQVLMWSATWPREVQKLAEDFLD--SYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFG 290 (453)
Q Consensus 230 -----------------~~~q~v~~SAT~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ 290 (453)
+...++.++||.+..+++.+-..+. ++... ... ....++...+..... ...+..
T Consensus 402 HdFRp~Yk~l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~--~~s--fnR~NL~yeV~~k~~---~~~~~~ 474 (941)
T KOG0351|consen 402 HDFRPSYKRLGLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPELF--KSS--FNRPNLKYEVSPKTD---KDALLD 474 (941)
T ss_pred ccccHHHHHHHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCccee--ccc--CCCCCceEEEEeccC---ccchHH
Confidence 5679999999998888766555543 33311 111 223444433333222 222333
Q ss_pred HHHhhh-cCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCC
Q psy9620 291 LLNDIS-SKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDV 369 (453)
Q Consensus 291 ll~~~~-~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v 369 (453)
++..+. ......+||||.++.+|+.++..|+..++.+..+|++|+..+|..|.+.|..++++|+|||=++.+|||.|||
T Consensus 475 ~~~~~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DV 554 (941)
T KOG0351|consen 475 ILEESKLRHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDV 554 (941)
T ss_pred HHHHhhhcCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCce
Confidence 333332 2456689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcCCChHHHHHHHHH
Q psy9620 370 KFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDLIDV 418 (453)
Q Consensus 370 ~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~ 418 (453)
+.||||.+|.+++.|+|-+|||||.|....|++|+...|...++.++.-
T Consensus 555 R~ViH~~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~~D~~~l~~ll~s 603 (941)
T KOG0351|consen 555 RFVIHYSLPKSFEGYYQEAGRAGRDGLPSSCVLLYGYADISELRRLLTS 603 (941)
T ss_pred eEEEECCCchhHHHHHHhccccCcCCCcceeEEecchhHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999988877777653
|
|
| >COG1202 Superfamily II helicase, archaea-specific [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-32 Score=256.46 Aligned_cols=280 Identities=23% Similarity=0.296 Sum_probs=227.4
Q ss_pred cccccCCCHHHHHHHHHCCCCCCCHHHHHHHHH-HhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEE
Q psy9620 114 EFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPI-AMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVL 192 (453)
Q Consensus 114 ~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~-i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil 192 (453)
...++.+|+.+.+.++..|+.++.|+|.-++.. +++|+|.+++++|+||||++..++-+..+.. .+.+.|+|
T Consensus 195 ~vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~-------~g~KmlfL 267 (830)
T COG1202 195 PVDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLS-------GGKKMLFL 267 (830)
T ss_pred cccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHh-------CCCeEEEE
Confidence 456788999999999999999999999999987 6799999999999999999999888887765 36679999
Q ss_pred cCCHHHHHHHHHHHHHhcCCCCceEEEEeCCccCCCC-------------------------------------------
Q psy9620 193 APTRELAQQIQEVARDFGSSTYLRSTCVYGGASKGPQ------------------------------------------- 229 (453)
Q Consensus 193 ~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~------------------------------------------- 229 (453)
+|..+||+|-++.|+.....+++++..-.|-......
T Consensus 268 vPLVALANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg~~lgdiGtVVIDEi 347 (830)
T COG1202 268 VPLVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTGKDLGDIGTVVIDEI 347 (830)
T ss_pred ehhHHhhcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcCCcccccceEEeeee
Confidence 9999999999999998777777777655543211110
Q ss_pred -----------------------CCceEEEEeccCcHHHHHHHHHhhccceEEEecccccccCccceeEEEEcc-ccchh
Q psy9620 230 -----------------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCA-EHEKE 285 (453)
Q Consensus 230 -----------------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~k~ 285 (453)
+..|+|.+|||+ .+-+++++.+-.+.+...- .+..+...+.++. +.+|.
T Consensus 348 HtL~deERG~RLdGLI~RLr~l~~~AQ~i~LSATV-gNp~elA~~l~a~lV~y~~------RPVplErHlvf~~~e~eK~ 420 (830)
T COG1202 348 HTLEDEERGPRLDGLIGRLRYLFPGAQFIYLSATV-GNPEELAKKLGAKLVLYDE------RPVPLERHLVFARNESEKW 420 (830)
T ss_pred eeccchhcccchhhHHHHHHHhCCCCeEEEEEeec-CChHHHHHHhCCeeEeecC------CCCChhHeeeeecCchHHH
Confidence 779999999998 4455677777665554332 2234555555565 66777
Q ss_pred hhHHHHHHhhhc-----CCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccC
Q psy9620 286 NKLFGLLNDISS-----KDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVA 360 (453)
Q Consensus 286 ~~l~~ll~~~~~-----~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~ 360 (453)
+.+..+.+.-.. .-.+++|||++|++.|..++.+|...|+.+..+|++|+..+|..+...|.++++.++|+|.++
T Consensus 421 ~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL 500 (830)
T COG1202 421 DIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAAL 500 (830)
T ss_pred HHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcceEeehhhh
Confidence 777776654321 124689999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCcEEEE----cCCCCChhHHHHhhhcccCCC--CcceEEEEEcCC
Q psy9620 361 ARGLDVDDVKFVIN----FDYPNNSEDYIHRIGRTGRSD--NTGTSYTFFTQQ 407 (453)
Q Consensus 361 ~~GiDip~v~~VI~----~d~p~s~~~y~qr~GRagR~g--~~g~~~~~~~~~ 407 (453)
+.|+|+|+-.+|+. -.-..|+.+|.||.|||||.+ ..|++|+++.+.
T Consensus 501 ~AGVDFPASQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg 553 (830)
T COG1202 501 AAGVDFPASQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPG 553 (830)
T ss_pred hcCCCCchHHHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCC
Confidence 99999998775542 222457999999999999986 459999998875
|
|
| >COG1204 Superfamily II helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-31 Score=276.24 Aligned_cols=280 Identities=20% Similarity=0.264 Sum_probs=213.4
Q ss_pred cCCCHHHHHHHHHCCCCCCCHHHHHHHHHHh-cCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCH
Q psy9620 118 ANFPDYVLKEVKRQGFDRPTPIQAQGWPIAM-SGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTR 196 (453)
Q Consensus 118 ~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~-~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr 196 (453)
..+++.+.+-++..++.++.+.|+.++...+ +++|+|+|+|||||||+.+++.++..+... +.++|+|||++
T Consensus 14 ~~~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~-------~~k~vYivPlk 86 (766)
T COG1204 14 VKLDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEG-------GGKVVYIVPLK 86 (766)
T ss_pred ccccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhc-------CCcEEEEeChH
Confidence 3477788888888888888888888887654 679999999999999999999999988763 45699999999
Q ss_pred HHHHHHHHHHHHhcCCCCceEEEEeCCccCCCC-----------------------------------------------
Q psy9620 197 ELAQQIQEVARDFGSSTYLRSTCVYGGASKGPQ----------------------------------------------- 229 (453)
Q Consensus 197 ~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~----------------------------------------------- 229 (453)
+||.++++.++ .....++++...+|+......
T Consensus 87 ALa~Ek~~~~~-~~~~~GirV~~~TgD~~~~~~~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~RG~ 165 (766)
T COG1204 87 ALAEEKYEEFS-RLEELGIRVGISTGDYDLDDERLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTRGP 165 (766)
T ss_pred HHHHHHHHHhh-hHHhcCCEEEEecCCcccchhhhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCcccCc
Confidence 99999999999 335678999999998875442
Q ss_pred -------------CCceEEEEeccCcHHHHHHHHHhhccceEEEecccccccCccceeEEEEccccc------hhhhHHH
Q psy9620 230 -------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHE------KENKLFG 290 (453)
Q Consensus 230 -------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~------k~~~l~~ 290 (453)
...|++.+|||+| +..+++.+.-.+.+........+.......+.+....... ..+....
T Consensus 166 ~lE~iv~r~~~~~~~~rivgLSATlp-N~~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~~~~~~ 244 (766)
T COG1204 166 VLESIVARMRRLNELIRIVGLSATLP-NAEEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNLALE 244 (766)
T ss_pred eehhHHHHHHhhCcceEEEEEeeecC-CHHHHHHHhCCcccccCCCCcccccCCccceEEEEecCccccccccchHHHHH
Confidence 3479999999995 5778888876665533333333222222233333332222 2233333
Q ss_pred HHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhc-------------------------------------CCeEEEEcCC
Q psy9620 291 LLNDISSKDENKTIIFAETKRKVDKITKSIQNY-------------------------------------GWAAVGIHGD 333 (453)
Q Consensus 291 ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~-------------------------------------~~~~~~~h~~ 333 (453)
++.... ...+++||||+|++.+...+..|... -..+.+||++
T Consensus 245 ~v~~~~-~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAG 323 (766)
T COG1204 245 LVLESL-AEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAG 323 (766)
T ss_pred HHHHHH-hcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccC
Confidence 333322 34679999999999999999998830 1236789999
Q ss_pred CCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEE----EcC-----CCCChhHHHHhhhcccCCCCc--ceEEE
Q psy9620 334 KSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVI----NFD-----YPNNSEDYIHRIGRTGRSDNT--GTSYT 402 (453)
Q Consensus 334 ~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI----~~d-----~p~s~~~y~qr~GRagR~g~~--g~~~~ 402 (453)
++.++|..+.+.|+.|.++|||||+++++|+|+|.-.+|| .|| .+-+.-+++||+|||||.|-+ |.+++
T Consensus 324 L~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~~G~~~i 403 (766)
T COG1204 324 LPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDDYGEAII 403 (766)
T ss_pred CCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCcCCCCcEEE
Confidence 9999999999999999999999999999999999988887 366 456789999999999999755 66666
Q ss_pred EEcCC
Q psy9620 403 FFTQQ 407 (453)
Q Consensus 403 ~~~~~ 407 (453)
+.+..
T Consensus 404 ~~~~~ 408 (766)
T COG1204 404 LATSH 408 (766)
T ss_pred EecCc
Confidence 66443
|
|
| >PRK14701 reverse gyrase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.2e-31 Score=293.75 Aligned_cols=272 Identities=18% Similarity=0.183 Sum_probs=202.2
Q ss_pred HHHHHHHH-CCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHH
Q psy9620 123 YVLKEVKR-QGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQ 201 (453)
Q Consensus 123 ~l~~~l~~-~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q 201 (453)
++.+.+++ .|| .|+++|+++++.+++|+|++++||||+|||++++++++.... .++++|||+||++|+.|
T Consensus 67 ~~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~~--------~g~~aLVl~PTreLa~Q 137 (1638)
T PRK14701 67 EFEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLAL--------KGKKCYIILPTTLLVKQ 137 (1638)
T ss_pred HHHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHh--------cCCeEEEEECHHHHHHH
Confidence 34455665 699 799999999999999999999999999999976666554321 36689999999999999
Q ss_pred HHHHHHHhcCCC--CceEEEEeCCccCCC-------------C-------------------------------------
Q psy9620 202 IQEVARDFGSST--YLRSTCVYGGASKGP-------------Q------------------------------------- 229 (453)
Q Consensus 202 ~~~~~~~~~~~~--~~~~~~~~gg~~~~~-------------~------------------------------------- 229 (453)
+.+.++.++... ++++..++|+.+... +
T Consensus 138 i~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l~~~~i~~iVVDEAD~ml~~~k 217 (1638)
T PRK14701 138 TVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEMKHLKFDFIFVDDVDAFLKASK 217 (1638)
T ss_pred HHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHHhhCCCCEEEEECceecccccc
Confidence 999999987654 345555555543211 0
Q ss_pred -------------------------------------------------CCce-EEEEeccCcHHHHHHHHHhhccceEE
Q psy9620 230 -------------------------------------------------PDRQ-VLMWSATWPREVQKLAEDFLDSYIQI 259 (453)
Q Consensus 230 -------------------------------------------------~~~q-~v~~SAT~~~~~~~~~~~~~~~~~~~ 259 (453)
...| ++++|||+++... . ..++.++..+
T Consensus 218 nid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~-~-~~l~~~~l~f 295 (1638)
T PRK14701 218 NIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGD-R-VKLYRELLGF 295 (1638)
T ss_pred ccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhH-H-HHHhhcCeEE
Confidence 0123 5679999985311 1 1334555555
Q ss_pred EecccccccCccceeEEEEccccchhhhHHHHHHhhhcCCCCcEEEEEcchhH---HHHHHHHHHhcCCeEEEEcCCCCH
Q psy9620 260 NIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRK---VDKITKSIQNYGWAAVGIHGDKSQ 336 (453)
Q Consensus 260 ~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~---~~~l~~~L~~~~~~~~~~h~~~~~ 336 (453)
.+.... ....++.+.+.......+ ..+..+++.. ...+||||++++. |+.+++.|...|+.+..+|++
T Consensus 296 ~v~~~~-~~lr~i~~~yi~~~~~~k-~~L~~ll~~~----g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~--- 366 (1638)
T PRK14701 296 EVGSGR-SALRNIVDVYLNPEKIIK-EHVRELLKKL----GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK--- 366 (1638)
T ss_pred EecCCC-CCCCCcEEEEEECCHHHH-HHHHHHHHhC----CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch---
Confidence 555443 333556666554443333 4566666543 4589999999886 589999999999999999994
Q ss_pred HHHHHHHHHHhcCCCcEEEEe----ccCccCCCCCC-CcEEEEcCCCC---ChhHHHHhh-------------hcccCCC
Q psy9620 337 QERDYVLKEFRNGRAGILVAT----DVAARGLDVDD-VKFVINFDYPN---NSEDYIHRI-------------GRTGRSD 395 (453)
Q Consensus 337 ~~r~~~~~~f~~g~~~vLvaT----~~~~~GiDip~-v~~VI~~d~p~---s~~~y~qr~-------------GRagR~g 395 (453)
|..++++|++|+++||||| ++++||||+|+ |++|||||+|. +++.|.|.. ||++|.|
T Consensus 367 --R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g 444 (1638)
T PRK14701 367 --NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEG 444 (1638)
T ss_pred --HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccC
Confidence 8899999999999999999 58999999999 99999999999 888776655 9999999
Q ss_pred CcceEEEEEcCCChHHHHHHH
Q psy9620 396 NTGTSYTFFTQQNSRQAKDLI 416 (453)
Q Consensus 396 ~~g~~~~~~~~~~~~~~~~l~ 416 (453)
.+..+++.+...+...++.++
T Consensus 445 ~~~~~~~~~~~~~~~~~~~~l 465 (1638)
T PRK14701 445 IPIEGVLDVFPEDVEFLRSIL 465 (1638)
T ss_pred CcchhHHHhHHHHHHHHHHHh
Confidence 888887555555544444444
|
|
| >KOG0352|consensus | Back alignment and domain information |
|---|
Probab=99.98 E-value=7.8e-32 Score=248.64 Aligned_cols=281 Identities=21% Similarity=0.285 Sum_probs=207.6
Q ss_pred HHHHHHHHC-CCCC-CCHHHHHHHHHHh-cCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHH
Q psy9620 123 YVLKEVKRQ-GFDR-PTPIQAQGWPIAM-SGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELA 199 (453)
Q Consensus 123 ~l~~~l~~~-g~~~-~~~~Q~~~i~~i~-~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La 199 (453)
.+.++|++. |+.. -++.|.+|+..+- ..+|+.+++|||+||++||+||.|.+ +...||++|..+|.
T Consensus 6 ~VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~-----------~gITIV~SPLiALI 74 (641)
T KOG0352|consen 6 KVREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH-----------GGITIVISPLIALI 74 (641)
T ss_pred HHHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh-----------CCeEEEehHHHHHH
Confidence 455677764 6664 4789999999876 46799999999999999999999964 34799999999999
Q ss_pred HHHHHHHHHhcC------------------------CCCceEEEEeCCc--cCCCC------------------------
Q psy9620 200 QQIQEVARDFGS------------------------STYLRSTCVYGGA--SKGPQ------------------------ 229 (453)
Q Consensus 200 ~q~~~~~~~~~~------------------------~~~~~~~~~~gg~--~~~~~------------------------ 229 (453)
.++.+.+..+-- ...++...+.... +...|
T Consensus 75 kDQiDHL~~LKVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHCVS 154 (641)
T KOG0352|consen 75 KDQIDHLKRLKVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAHCVS 154 (641)
T ss_pred HHHHHHHHhcCCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhhhHh
Confidence 988887776521 0111211111100 00000
Q ss_pred --------------------CCceEEEEeccCcHHHHHHHHHh--hccceEEEecccccccCccceeEEEE-ccccchhh
Q psy9620 230 --------------------PDRQVLMWSATWPREVQKLAEDF--LDSYIQINIGSLTLSANHNIQQVVEV-CAEHEKEN 286 (453)
Q Consensus 230 --------------------~~~q~v~~SAT~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~k~~ 286 (453)
++..-|.++||..+.+++.+-.- +++|+.+.-.... . .++-..+.+ ....+...
T Consensus 155 QWGHDFRPDYL~LG~LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~F-R--~NLFYD~~~K~~I~D~~~ 231 (641)
T KOG0352|consen 155 QWGHDFRPDYLTLGSLRSVCPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTF-R--DNLFYDNHMKSFITDCLT 231 (641)
T ss_pred hhccccCcchhhhhhHHhhCCCCceEEeecccChhHHHHHHHHHhhcCcHHhccCcch-h--hhhhHHHHHHHHhhhHhH
Confidence 67788999999999888655443 3455543322111 0 111000000 00112233
Q ss_pred hHHHHHHhhhc-------C---CCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEE
Q psy9620 287 KLFGLLNDISS-------K---DENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVA 356 (453)
Q Consensus 287 ~l~~ll~~~~~-------~---~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLva 356 (453)
.|.++.....- . ..+-.||||.|+++|++++-.|...|+++..+|+++-..||.+|.++|.++++.||+|
T Consensus 232 ~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~A 311 (641)
T KOG0352|consen 232 VLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNEIPVIAA 311 (641)
T ss_pred hHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCCCCEEEE
Confidence 34333332211 1 1246899999999999999999999999999999999999999999999999999999
Q ss_pred eccCccCCCCCCCcEEEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcCCChHHHHHHHH
Q psy9620 357 TDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDLID 417 (453)
Q Consensus 357 T~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~ 417 (453)
|..+.+|+|-|+|++|||+++|.|++-|.|..|||||.|....|-++|..+|.+.+.-|+.
T Consensus 312 T~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~i~FLi~ 372 (641)
T KOG0352|consen 312 TVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYYSRQDKNALNFLVS 372 (641)
T ss_pred EeccccccCCcceeEEEecCchhhhHHHHHhccccccCCCccceeeeecccchHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999888777764
|
|
| >TIGR00963 secA preprotein translocase, SecA subunit | Back alignment and domain information |
|---|
Probab=99.98 E-value=8.8e-31 Score=265.37 Aligned_cols=261 Identities=19% Similarity=0.214 Sum_probs=205.1
Q ss_pred CCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhcC
Q psy9620 132 GFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGS 211 (453)
Q Consensus 132 g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~~ 211 (453)
|. .|+++|..+.+.++.|+ |+.++||+|||++|.+|++..... +..|+|++||++||.|.++++..+..
T Consensus 54 g~-~p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~--------G~~V~VvTpt~~LA~qdae~~~~l~~ 122 (745)
T TIGR00963 54 GM-RPFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALT--------GKGVHVVTVNDYLAQRDAEWMGQVYR 122 (745)
T ss_pred CC-CccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHh--------CCCEEEEcCCHHHHHHHHHHHHHHhc
Confidence 66 89999999999988877 999999999999999999644432 33599999999999999999999999
Q ss_pred CCCceEEEEeCCccCCCC--------------------------------------------------------------
Q psy9620 212 STYLRSTCVYGGASKGPQ-------------------------------------------------------------- 229 (453)
Q Consensus 212 ~~~~~~~~~~gg~~~~~~-------------------------------------------------------------- 229 (453)
..++++.+++++.+...+
T Consensus 123 ~LGLsv~~i~g~~~~~~r~~~y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRtpLiisg~ 202 (745)
T TIGR00963 123 FLGLSVGLILSGMSPEERREAYACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLIISGP 202 (745)
T ss_pred cCCCeEEEEeCCCCHHHHHHhcCCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhhhHHhhcCC
Confidence 999999999887543211
Q ss_pred --------------------------------------------------------------------------------
Q psy9620 230 -------------------------------------------------------------------------------- 229 (453)
Q Consensus 230 -------------------------------------------------------------------------------- 229 (453)
T Consensus 203 ~~~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l~~~d~dY 282 (745)
T TIGR00963 203 AEKSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKELFEKDVDY 282 (745)
T ss_pred CCCchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHHHHhcCCcE
Confidence
Q ss_pred --------------------------------------------------------CCceEEEEeccCcHHHHHHHHHhh
Q psy9620 230 --------------------------------------------------------PDRQVLMWSATWPREVQKLAEDFL 253 (453)
Q Consensus 230 --------------------------------------------------------~~~q~v~~SAT~~~~~~~~~~~~~ 253 (453)
.-.++..||.|...+..++.+.|-
T Consensus 283 iV~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY~ 362 (745)
T TIGR00963 283 IVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEFEKIYN 362 (745)
T ss_pred EEECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHHHHHHHHHhC
Confidence 123456677777655555555444
Q ss_pred ccceEEEecccccccCccceeEEEEccccchhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCC
Q psy9620 254 DSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGD 333 (453)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~ 333 (453)
.+.+.+...... .... .....+....+|...+...+.... ....|+||||+|+..++.++..|...++++..+|+.
T Consensus 363 l~vv~IPtnkp~--~R~d-~~d~i~~t~~~k~~ai~~~i~~~~-~~grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna~ 438 (745)
T TIGR00963 363 LEVVVVPTNRPV--IRKD-LSDLVYKTEEEKWKAVVDEIKERH-AKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAK 438 (745)
T ss_pred CCEEEeCCCCCe--eeee-CCCeEEcCHHHHHHHHHHHHHHHH-hcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCC
Confidence 443332211110 0011 111223334456655655554443 357799999999999999999999999999999997
Q ss_pred CCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCC-------CcEEEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcC
Q psy9620 334 KSQQERDYVLKEFRNGRAGILVATDVAARGLDVDD-------VKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQ 406 (453)
Q Consensus 334 ~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~-------v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~ 406 (453)
+.+|+..+..|+.+...|+|||++++||+||+. ..+||+++.|.|...|.|++||+||.|.+|.+..|++.
T Consensus 439 --q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~~ls~ 516 (745)
T TIGR00963 439 --NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSL 516 (745)
T ss_pred --hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceEEEEec
Confidence 889999999999999999999999999999998 55999999999999999999999999999999999998
Q ss_pred CCh
Q psy9620 407 QNS 409 (453)
Q Consensus 407 ~~~ 409 (453)
+|.
T Consensus 517 eD~ 519 (745)
T TIGR00963 517 EDN 519 (745)
T ss_pred cHH
Confidence 763
|
The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus. |
| >TIGR03714 secA2 accessory Sec system translocase SecA2 | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.1e-30 Score=266.47 Aligned_cols=171 Identities=15% Similarity=0.171 Sum_probs=128.5
Q ss_pred ceEEEEeccCcHHHHHHHHHhhccceEEEecccccccCccceeEEEEccccchhhhHHHHHHhhhcCCCCcEEEEEcchh
Q psy9620 232 RQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKR 311 (453)
Q Consensus 232 ~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~ 311 (453)
.++..||.|...+..++.+.|-.+.+. +.... +....-.....+....+|...+...+.... ....++||||+|+.
T Consensus 360 ~kl~GmTGTa~~~~~Ef~~iY~l~v~~--IPt~k-p~~r~d~~d~i~~~~~~K~~ai~~~i~~~~-~~~~pvLIft~s~~ 435 (762)
T TIGR03714 360 NKLSGMTGTGKVAEKEFIETYSLSVVK--IPTNK-PIIRIDYPDKIYATLPEKLMATLEDVKEYH-ETGQPVLLITGSVE 435 (762)
T ss_pred chhcccCCCChhHHHHHHHHhCCCEEE--cCCCC-CeeeeeCCCeEEECHHHHHHHHHHHHHHHh-hCCCCEEEEECcHH
Confidence 345667777655555554444333222 21111 000111112344455667777777766543 34679999999999
Q ss_pred HHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCC---------CCcEEEEcCCCCChh
Q psy9620 312 KVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVD---------DVKFVINFDYPNNSE 382 (453)
Q Consensus 312 ~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip---------~v~~VI~~d~p~s~~ 382 (453)
.++.++..|...++++..+|+.+.+.++..+..+++.| .|+|||++++||+||+ ++.+|+++++|....
T Consensus 436 ~se~ls~~L~~~gi~~~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~ri 513 (762)
T TIGR03714 436 MSEIYSELLLREGIPHNLLNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRV 513 (762)
T ss_pred HHHHHHHHHHHCCCCEEEecCCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCCCCcHH
Confidence 99999999999999999999999998888887777666 7999999999999999 999999999998877
Q ss_pred HHHHhhhcccCCCCcceEEEEEcCCCh
Q psy9620 383 DYIHRIGRTGRSDNTGTSYTFFTQQNS 409 (453)
Q Consensus 383 ~y~qr~GRagR~g~~g~~~~~~~~~~~ 409 (453)
+ +||+|||||.|.+|.+++|++.+|.
T Consensus 514 d-~qr~GRtGRqG~~G~s~~~is~eD~ 539 (762)
T TIGR03714 514 D-LQLRGRSGRQGDPGSSQFFVSLEDD 539 (762)
T ss_pred H-HHhhhcccCCCCceeEEEEEccchh
Confidence 7 9999999999999999999998663
|
Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii. |
| >KOG0349|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-31 Score=246.98 Aligned_cols=220 Identities=30% Similarity=0.497 Sum_probs=160.8
Q ss_pred CcEEEEEcCCHHHHHHHHHHHHHh---cCCCCceEEEEeCCccCCCC---------------------------------
Q psy9620 186 GPIVLVLAPTRELAQQIQEVARDF---GSSTYLRSTCVYGGASKGPQ--------------------------------- 229 (453)
Q Consensus 186 ~~~vlil~Ptr~La~q~~~~~~~~---~~~~~~~~~~~~gg~~~~~~--------------------------------- 229 (453)
.|.+||+-|.|||++|.+..+.+| .++..++...+.||.....|
T Consensus 286 ap~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~lt~cr 365 (725)
T KOG0349|consen 286 APEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVTLTHCR 365 (725)
T ss_pred CcceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccceeeeeeE
Confidence 578999999999999999855554 44445555555555433322
Q ss_pred ---------------------------------CCceEEEEeccCc-HHHHHHHHHhhccceEEEecccccccCccceeE
Q psy9620 230 ---------------------------------PDRQVLMWSATWP-REVQKLAEDFLDSYIQINIGSLTLSANHNIQQV 275 (453)
Q Consensus 230 ---------------------------------~~~q~v~~SAT~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 275 (453)
...|.+++|||+. -++.++.+..+.-|.-+...... .++..+.++
T Consensus 366 FlvlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD-~vpetvHhv 444 (725)
T KOG0349|consen 366 FLVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGED-LVPETVHHV 444 (725)
T ss_pred EEEecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEeccccc-ccchhhccc
Confidence 4568899999975 34556666666655544443322 222333332
Q ss_pred EEEccc------------------------------cchhhhHHHHH------HhhhcCCCCcEEEEEcchhHHHHHHHH
Q psy9620 276 VEVCAE------------------------------HEKENKLFGLL------NDISSKDENKTIIFAETKRKVDKITKS 319 (453)
Q Consensus 276 ~~~~~~------------------------------~~k~~~l~~ll------~~~~~~~~~~~lVF~~s~~~~~~l~~~ 319 (453)
+..+.. .+....-..++ ..+......++||||.|+.+|+.|.++
T Consensus 445 v~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~mdkaiifcrtk~dcDnLer~ 524 (725)
T KOG0349|consen 445 VKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRHAMDKAIIFCRTKQDCDNLERM 524 (725)
T ss_pred eeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhhccCceEEEEeccccchHHHHH
Confidence 222110 00111111111 122333456999999999999999999
Q ss_pred HHhc---CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEEEcCCCCChhHHHHhhhcccCCCC
Q psy9620 320 IQNY---GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDN 396 (453)
Q Consensus 320 L~~~---~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~ 396 (453)
|.+. .+.++++|++..+.||.+.++.|+....+.|||||+++|||||..+-++||.-+|.+...|+||+||+||+..
T Consensus 525 ~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtlpd~k~nyvhrigrvgraer 604 (725)
T KOG0349|consen 525 MNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRIGRVGRAER 604 (725)
T ss_pred HHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEecCcccchhhhhhhccchhhh
Confidence 9986 4789999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cceEEEEEcC
Q psy9620 397 TGTSYTFFTQ 406 (453)
Q Consensus 397 ~g~~~~~~~~ 406 (453)
-|.+|+++..
T Consensus 605 mglaislvat 614 (725)
T KOG0349|consen 605 MGLAISLVAT 614 (725)
T ss_pred cceeEEEeec
Confidence 8999988764
|
|
| >COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-29 Score=239.64 Aligned_cols=267 Identities=26% Similarity=0.334 Sum_probs=197.2
Q ss_pred CCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhcCC
Q psy9620 133 FDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGSS 212 (453)
Q Consensus 133 ~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~~~ 212 (453)
.-+++.+|......++.+ |+|++.|||-|||+.+++-+..++... .+ ++|+|+||+-|+.|.++.++++..-
T Consensus 13 ~ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~------~~-kvlfLAPTKPLV~Qh~~~~~~v~~i 84 (542)
T COG1111 13 TIEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWF------GG-KVLFLAPTKPLVLQHAEFCRKVTGI 84 (542)
T ss_pred cccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhc------CC-eEEEecCCchHHHHHHHHHHHHhCC
Confidence 347889999988887765 999999999999999888777776653 23 7999999999999999999998766
Q ss_pred CCceEEEEeCCccCCCC-----------------------------------------------------------CCce
Q psy9620 213 TYLRSTCVYGGASKGPQ-----------------------------------------------------------PDRQ 233 (453)
Q Consensus 213 ~~~~~~~~~gg~~~~~~-----------------------------------------------------------~~~q 233 (453)
..-.++.+.|....... .++.
T Consensus 85 p~~~i~~ltGev~p~~R~~~w~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~~k~~~ 164 (542)
T COG1111 85 PEDEIAALTGEVRPEEREELWAKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRSAKNPL 164 (542)
T ss_pred ChhheeeecCCCChHHHHHHHhhCCEEEeccHHHHhHHhcCccChHHceEEEechhhhccCcchHHHHHHHHHHhccCce
Confidence 66677777777665432 5567
Q ss_pred EEEEeccCcHHHHHH---HHHhhccceEEE----------------------ecc-------------------------
Q psy9620 234 VLMWSATWPREVQKL---AEDFLDSYIQIN----------------------IGS------------------------- 263 (453)
Q Consensus 234 ~v~~SAT~~~~~~~~---~~~~~~~~~~~~----------------------~~~------------------------- 263 (453)
++.+|||+-.+.+.+ .+.+.-..+.+. ...
T Consensus 165 ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~g~ 244 (542)
T COG1111 165 ILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKELGV 244 (542)
T ss_pred EEEEecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 999999975443332 221111111100 000
Q ss_pred ----cccc---------------cC--c-------------------------cce------------------------
Q psy9620 264 ----LTLS---------------AN--H-------------------------NIQ------------------------ 273 (453)
Q Consensus 264 ----~~~~---------------~~--~-------------------------~i~------------------------ 273 (453)
...+ .. . .+.
T Consensus 245 ~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~a~~l 324 (542)
T COG1111 245 IESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKAAKSL 324 (542)
T ss_pred eeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccchHHHHHH
Confidence 0000 00 0 000
Q ss_pred --------------eEEEEccccchhhhHHHHHHhhh-cCCCCcEEEEEcchhHHHHHHHHHHhcCCeEE--EE------
Q psy9620 274 --------------QVVEVCAEHEKENKLFGLLNDIS-SKDENKTIIFAETKRKVDKITKSIQNYGWAAV--GI------ 330 (453)
Q Consensus 274 --------------~~~~~~~~~~k~~~l~~ll~~~~-~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~--~~------ 330 (453)
........+.|...+.+++.+.. ...+.++|||++.+++|+.+.++|...+..+. ++
T Consensus 325 ~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~ 404 (542)
T COG1111 325 LADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASRE 404 (542)
T ss_pred hcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeeccccc
Confidence 00000112345555566665543 23456999999999999999999999887763 32
Q ss_pred -cCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcCCC
Q psy9620 331 -HGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQN 408 (453)
Q Consensus 331 -h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~ 408 (453)
..+|+|.++.++++.|+.|+.+|||||++.++|||||++++||.|++..|...++||.|||||. ..|.+++++++..
T Consensus 405 ~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~-r~Grv~vLvt~gt 482 (542)
T COG1111 405 GDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK-RKGRVVVLVTEGT 482 (542)
T ss_pred cccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccC-CCCeEEEEEecCc
Confidence 2579999999999999999999999999999999999999999999999999999999999998 8999999999873
|
|
| >KOG0353|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-30 Score=234.96 Aligned_cols=276 Identities=21% Similarity=0.324 Sum_probs=211.2
Q ss_pred cccCCCHHHHHHHHHC-CCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcC
Q psy9620 116 AEANFPDYVLKEVKRQ-GFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAP 194 (453)
Q Consensus 116 ~~~~l~~~l~~~l~~~-g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P 194 (453)
++++.++...+.|++. ...+++|.|.++|...+.++|++++.|||.||++||.+|+|.. ...+||+||
T Consensus 74 d~fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~a-----------dg~alvi~p 142 (695)
T KOG0353|consen 74 DDFPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCA-----------DGFALVICP 142 (695)
T ss_pred CCCCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhc-----------CCceEeech
Confidence 4567777777777765 5678999999999999999999999999999999999999863 456999999
Q ss_pred CHHHHHHHHHHHHHhcCCCCceEEEEeCCccCCCC---------------------------------------------
Q psy9620 195 TRELAQQIQEVARDFGSSTYLRSTCVYGGASKGPQ--------------------------------------------- 229 (453)
Q Consensus 195 tr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~--------------------------------------------- 229 (453)
...|++++.-.++.++- ....+....++...
T Consensus 143 lislmedqil~lkqlgi----~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~ 218 (695)
T KOG0353|consen 143 LISLMEDQILQLKQLGI----DASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKL 218 (695)
T ss_pred hHHHHHHHHHHHHHhCc----chhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEE
Confidence 99999998888887752 22211111111000
Q ss_pred ------------------------------CCceEEEEeccCcHHHHHHHHHhhccceEEEecccccccCccceeEEEEc
Q psy9620 230 ------------------------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVC 279 (453)
Q Consensus 230 ------------------------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 279 (453)
+...++.++||....+...++.++.--........ ....++...+...
T Consensus 219 iaidevhccsqwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~tf~a~--fnr~nl~yev~qk 296 (695)
T KOG0353|consen 219 IAIDEVHCCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTFRAG--FNRPNLKYEVRQK 296 (695)
T ss_pred EeecceeehhhhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhheeecc--cCCCCceeEeeeC
Confidence 67789999999988888777776542111111111 1123333222222
Q ss_pred cccchhhhHHHHHHhhhc-CCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEec
Q psy9620 280 AEHEKENKLFGLLNDISS-KDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATD 358 (453)
Q Consensus 280 ~~~~k~~~l~~ll~~~~~-~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~ 358 (453)
+. ...+.+.++.+.+.. ......||||-++++|+.++..|+..|+.+..+|+.|.+.+|.-+-..|..|+++|+|||-
T Consensus 297 p~-n~dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~eiqvivatv 375 (695)
T KOG0353|consen 297 PG-NEDDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATV 375 (695)
T ss_pred CC-ChHHHHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccccceEEEEEEe
Confidence 22 122333334443321 2345789999999999999999999999999999999999999999999999999999999
Q ss_pred cCccCCCCCCCcEEEEcCCCCChhHHHH-------------------------------------------hhhcccCCC
Q psy9620 359 VAARGLDVDDVKFVINFDYPNNSEDYIH-------------------------------------------RIGRTGRSD 395 (453)
Q Consensus 359 ~~~~GiDip~v~~VI~~d~p~s~~~y~q-------------------------------------------r~GRagR~g 395 (453)
.+.+|||-|+|++|||..+|.|++.|.| ..||+||.+
T Consensus 376 afgmgidkpdvrfvihhsl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~ 455 (695)
T KOG0353|consen 376 AFGMGIDKPDVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDD 455 (695)
T ss_pred eecccCCCCCeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCC
Confidence 9999999999999999999999999999 679999999
Q ss_pred CcceEEEEEcCCCh
Q psy9620 396 NTGTSYTFFTQQNS 409 (453)
Q Consensus 396 ~~g~~~~~~~~~~~ 409 (453)
.+..|++++--.|.
T Consensus 456 ~~a~cilyy~~~di 469 (695)
T KOG0353|consen 456 MKADCILYYGFADI 469 (695)
T ss_pred CcccEEEEechHHH
Confidence 99999999975543
|
|
| >KOG0952|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-29 Score=255.39 Aligned_cols=282 Identities=19% Similarity=0.236 Sum_probs=213.0
Q ss_pred CCCCCCCHHHHHHHHHHh-cCCcEEEEecCCCcchhhhhHHHHHHhhhcCC--CCCCCCcEEEEEcCCHHHHHHHHHHHH
Q psy9620 131 QGFDRPTPIQAQGWPIAM-SGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQ--LKPGDGPIVLVLAPTRELAQQIQEVAR 207 (453)
Q Consensus 131 ~g~~~~~~~Q~~~i~~i~-~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~--~~~~~~~~vlil~Ptr~La~q~~~~~~ 207 (453)
++|..++.+|+.++|.++ ++.|+|||||||+|||..|+|.+|..+..... ....++.++++|+|+++||..+.+.+.
T Consensus 106 f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~ 185 (1230)
T KOG0952|consen 106 FSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFS 185 (1230)
T ss_pred ccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHh
Confidence 478899999999999988 67899999999999999999999998875221 122357789999999999999999999
Q ss_pred HhcCCCCceEEEEeCCccCCCC----------------------------------------------------------
Q psy9620 208 DFGSSTYLRSTCVYGGASKGPQ---------------------------------------------------------- 229 (453)
Q Consensus 208 ~~~~~~~~~~~~~~gg~~~~~~---------------------------------------------------------- 229 (453)
+-....++++..++|+......
T Consensus 186 kkl~~~gi~v~ELTGD~ql~~tei~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLhd~RGpvlEtiVaRt 265 (1230)
T KOG0952|consen 186 KKLAPLGISVRELTGDTQLTKTEIADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLHDDRGPVLETIVART 265 (1230)
T ss_pred hhcccccceEEEecCcchhhHHHHHhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhhcCcccchHHHHHHHH
Confidence 8888889999999998654322
Q ss_pred --------CCceEEEEeccCcHHHHHHHHHhhccce-EEEecccccccCccceeEEEEcccc---chhh-----hHHHHH
Q psy9620 230 --------PDRQVLMWSATWPREVQKLAEDFLDSYI-QINIGSLTLSANHNIQQVVEVCAEH---EKEN-----KLFGLL 292 (453)
Q Consensus 230 --------~~~q~v~~SAT~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~---~k~~-----~l~~ll 292 (453)
....+|.+|||+| ++.+++.++-.++. .+...... -.+..+.+.+...... .+.. ...+++
T Consensus 266 lr~vessqs~IRivgLSATlP-N~eDvA~fL~vn~~~glfsFd~~-yRPvpL~~~~iG~k~~~~~~~~~~~d~~~~~kv~ 343 (1230)
T KOG0952|consen 266 LRLVESSQSMIRIVGLSATLP-NYEDVARFLRVNPYAGLFSFDQR-YRPVPLTQGFIGIKGKKNRQQKKNIDEVCYDKVV 343 (1230)
T ss_pred HHHHHhhhhheEEEEeeccCC-CHHHHHHHhcCCCccceeeeccc-ccccceeeeEEeeecccchhhhhhHHHHHHHHHH
Confidence 4568999999995 57788887766632 22111111 2223344444433322 1111 112222
Q ss_pred HhhhcCCCCcEEEEEcchhHHHHHHHHHHhc-----------------------CCeEEEEcCCCCHHHHHHHHHHHhcC
Q psy9620 293 NDISSKDENKTIIFAETKRKVDKITKSIQNY-----------------------GWAAVGIHGDKSQQERDYVLKEFRNG 349 (453)
Q Consensus 293 ~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~-----------------------~~~~~~~h~~~~~~~r~~~~~~f~~g 349 (453)
+.+ ..+.+++|||.++..+...|+.|.+. .....++|++|...+|..+.+.|..|
T Consensus 344 e~~--~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~G 421 (1230)
T KOG0952|consen 344 EFL--QEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKEG 421 (1230)
T ss_pred HHH--HcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHhcC
Confidence 222 24679999999999999999998753 12467899999999999999999999
Q ss_pred CCcEEEEeccCccCCCCCCCcEEEE----cCCCC------ChhHHHHhhhcccCC--CCcceEEEEEcCCChHHHHHHH
Q psy9620 350 RAGILVATDVAARGLDVDDVKFVIN----FDYPN------NSEDYIHRIGRTGRS--DNTGTSYTFFTQQNSRQAKDLI 416 (453)
Q Consensus 350 ~~~vLvaT~~~~~GiDip~v~~VI~----~d~p~------s~~~y~qr~GRagR~--g~~g~~~~~~~~~~~~~~~~l~ 416 (453)
.++||+||..+++|+++|+--++|- ||.-. .+.+.+|.+|||||. ...|.++++.+.+....+..|+
T Consensus 422 ~i~vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~~Y~sLl 500 (1230)
T KOG0952|consen 422 HIKVLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLDHYESLL 500 (1230)
T ss_pred CceEEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEecccHHHHHHHHH
Confidence 9999999999999999998777662 44433 477889999999998 4669999998887766665554
|
|
| >TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.6e-29 Score=242.64 Aligned_cols=233 Identities=21% Similarity=0.265 Sum_probs=162.0
Q ss_pred HHHHHHHHHhcCCc--EEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhcCC----
Q psy9620 139 IQAQGWPIAMSGSN--MVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGSS---- 212 (453)
Q Consensus 139 ~Q~~~i~~i~~g~d--~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~~~---- 212 (453)
+|.++++.+.++.+ ++++||||||||++|++|++.. ..++++++|+++|++|+.+.++.+...
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~-----------~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~ 69 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG-----------ENDTIALYPTNALIEDQTEAIKEFVDVFKPE 69 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc-----------CCCEEEEeChHHHHHHHHHHHHHHHHhcCCC
Confidence 59999999998874 7889999999999999998841 234899999999999999988887522
Q ss_pred CCceEEEEeCCccC-----------------------------CCC----------------------------------
Q psy9620 213 TYLRSTCVYGGASK-----------------------------GPQ---------------------------------- 229 (453)
Q Consensus 213 ~~~~~~~~~gg~~~-----------------------------~~~---------------------------------- 229 (453)
.+..+..+.|.... ...
T Consensus 70 ~~~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~i 149 (357)
T TIGR03158 70 RDVNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTV 149 (357)
T ss_pred CCceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEE
Confidence 12333333332000 000
Q ss_pred ------------------------------CCceEEEEeccCcHHHHHHHHHh--hccceEEEecc-ccc--------c-
Q psy9620 230 ------------------------------PDRQVLMWSATWPREVQKLAEDF--LDSYIQINIGS-LTL--------S- 267 (453)
Q Consensus 230 ------------------------------~~~q~v~~SAT~~~~~~~~~~~~--~~~~~~~~~~~-~~~--------~- 267 (453)
...+++++|||+++.+...+... +..++....+. ... .
T Consensus 150 V~DE~H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~ 229 (357)
T TIGR03158 150 IFDEFHLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADN 229 (357)
T ss_pred EEecccccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCChhhhccc
Confidence 24689999999999877766654 33332221111 000 0
Q ss_pred -------cCccceeEEEEccccchhhhHHHHHHhhh----cCCCCcEEEEEcchhHHHHHHHHHHhcC--CeEEEEcCCC
Q psy9620 268 -------ANHNIQQVVEVCAEHEKENKLFGLLNDIS----SKDENKTIIFAETKRKVDKITKSIQNYG--WAAVGIHGDK 334 (453)
Q Consensus 268 -------~~~~i~~~~~~~~~~~k~~~l~~ll~~~~----~~~~~~~lVF~~s~~~~~~l~~~L~~~~--~~~~~~h~~~ 334 (453)
....+.+.+.. ....+...+..+++.+. .....++||||+|+..++.++..|+..+ +.+..+||.+
T Consensus 230 ~~~~~~~~~~~i~~~~~~-~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~ 308 (357)
T TIGR03158 230 KTQSFRPVLPPVELELIP-APDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFA 308 (357)
T ss_pred cccccceeccceEEEEEe-CCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCC
Confidence 00133333322 22233333433333331 2345699999999999999999999864 5788899999
Q ss_pred CHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEEEcCCCCChhHHHHhhhccc
Q psy9620 335 SQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTG 392 (453)
Q Consensus 335 ~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRag 392 (453)
++.+|+.+ ++.+|||||+++++|||++.+ +|| ++ |.+.++|+||+||+|
T Consensus 309 ~~~~R~~~------~~~~iLVaTdv~~rGiDi~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 309 PKKDRERA------MQFDILLGTSTVDVGVDFKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred CHHHHHHh------ccCCEEEEecHHhcccCCCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 99998754 378999999999999999987 566 45 899999999999987
|
subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system. |
| >COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-29 Score=263.35 Aligned_cols=276 Identities=21% Similarity=0.316 Sum_probs=213.7
Q ss_pred CHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHH
Q psy9620 121 PDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQ 200 (453)
Q Consensus 121 ~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~ 200 (453)
...+..++.+.|...|+++|.+|+..+.+|+|+||+.+||||||++|++|+++++.+.+. .++|+|.||++||+
T Consensus 56 ~~~l~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~------a~AL~lYPtnALa~ 129 (851)
T COG1205 56 DESLKSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDPS------ARALLLYPTNALAN 129 (851)
T ss_pred hhHHHHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCcC------ccEEEEechhhhHh
Confidence 344577888888889999999999999999999999999999999999999999988654 27999999999999
Q ss_pred HHHHHHHHhcCCCC--ceEEEEeCCccCCCC-------------------------------------------------
Q psy9620 201 QIQEVARDFGSSTY--LRSTCVYGGASKGPQ------------------------------------------------- 229 (453)
Q Consensus 201 q~~~~~~~~~~~~~--~~~~~~~gg~~~~~~------------------------------------------------- 229 (453)
++.+.++++....+ +.+....|++.....
T Consensus 130 DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrG 209 (851)
T COG1205 130 DQAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRG 209 (851)
T ss_pred hHHHHHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccc
Confidence 99999999987776 666666666543321
Q ss_pred ---------------------CCceEEEEeccCcHHHHHHHHHhhccceEEEecccccccCccceeEEEEcc--------
Q psy9620 230 ---------------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCA-------- 280 (453)
Q Consensus 230 ---------------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-------- 280 (453)
...|+|++|||+.. -.+.++.+........+.... .......++...+
T Consensus 210 v~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~n-p~e~~~~l~~~~f~~~v~~~g--~~~~~~~~~~~~p~~~~~~~~ 286 (851)
T COG1205 210 VQGSEVALLLRRLLRRLRRYGSPLQIICTSATLAN-PGEFAEELFGRDFEVPVDEDG--SPRGLRYFVRREPPIRELAES 286 (851)
T ss_pred cchhHHHHHHHHHHHHHhccCCCceEEEEeccccC-hHHHHHHhcCCcceeeccCCC--CCCCceEEEEeCCcchhhhhh
Confidence 47899999999954 445556665544433233222 1222233332222
Q ss_pred -ccchhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHH----HHHHhcC----CeEEEEcCCCCHHHHHHHHHHHhcCCC
Q psy9620 281 -EHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKIT----KSIQNYG----WAAVGIHGDKSQQERDYVLKEFRNGRA 351 (453)
Q Consensus 281 -~~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~----~~L~~~~----~~~~~~h~~~~~~~r~~~~~~f~~g~~ 351 (453)
.......+..++.... .+.-++|+|+.++..++.++ ..+...+ ..+..+++++...+|..++..|+.|+.
T Consensus 287 ~r~s~~~~~~~~~~~~~-~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~ 365 (851)
T COG1205 287 IRRSALAELATLAALLV-RNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGEL 365 (851)
T ss_pred cccchHHHHHHHHHHHH-HcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCc
Confidence 1123333333333332 34669999999999999997 4444445 568889999999999999999999999
Q ss_pred cEEEEeccCccCCCCCCCcEEEEcCCCC-ChhHHHHhhhcccCCCCcceEEEEEcC
Q psy9620 352 GILVATDVAARGLDVDDVKFVINFDYPN-NSEDYIHRIGRTGRSDNTGTSYTFFTQ 406 (453)
Q Consensus 352 ~vLvaT~~~~~GiDip~v~~VI~~d~p~-s~~~y~qr~GRagR~g~~g~~~~~~~~ 406 (453)
.++++|++++-||||.+++.||.+..|. +..+|+||+||+||.++.+..++....
T Consensus 366 ~~~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~~ 421 (851)
T COG1205 366 LGVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLRS 421 (851)
T ss_pred cEEecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEEEeCC
Confidence 9999999999999999999999999999 899999999999999866666665553
|
|
| >TIGR01054 rgy reverse gyrase | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.4e-29 Score=268.38 Aligned_cols=235 Identities=19% Similarity=0.312 Sum_probs=174.2
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHH
Q psy9620 124 VLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQ 203 (453)
Q Consensus 124 l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~ 203 (453)
+.+.+.+.....|+++|+.+++.++.|+|++++||||+|||+ |.+|++..+.. .++++|||+||++||.|++
T Consensus 67 f~~~f~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~-------~g~~vLIL~PTreLa~Qi~ 138 (1171)
T TIGR01054 67 FEEFFKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAK-------KGKRCYIILPTTLLVIQVA 138 (1171)
T ss_pred HHHHHHHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHh-------cCCeEEEEeCHHHHHHHHH
Confidence 334444433448999999999999999999999999999996 66777665533 3678999999999999999
Q ss_pred HHHHHhcCCCCceEE---EEeCCccCCC-------------C--------------------------------C-----
Q psy9620 204 EVARDFGSSTYLRST---CVYGGASKGP-------------Q--------------------------------P----- 230 (453)
Q Consensus 204 ~~~~~~~~~~~~~~~---~~~gg~~~~~-------------~--------------------------------~----- 230 (453)
+.++.++...++.+. +++|+.+... + .
T Consensus 139 ~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~~~~~~iVvDEaD~~L~~~k~v 218 (1171)
T TIGR01054 139 EKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELGPKFDFIFVDDVDALLKASKNV 218 (1171)
T ss_pred HHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhcCCCCEEEEeChHhhhhccccH
Confidence 999999876665543 3445532210 0 0
Q ss_pred ---------------------------------------------Cce--EEEEecc-CcHHHHHHHHHhhccceEEEec
Q psy9620 231 ---------------------------------------------DRQ--VLMWSAT-WPREVQKLAEDFLDSYIQINIG 262 (453)
Q Consensus 231 ---------------------------------------------~~q--~v~~SAT-~~~~~~~~~~~~~~~~~~~~~~ 262 (453)
.+| ++++||| +|..+.. .++.+...+.+.
T Consensus 219 d~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~---~l~r~ll~~~v~ 295 (1171)
T TIGR01054 219 DKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRA---KLFRELLGFEVG 295 (1171)
T ss_pred HHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHH---HHcccccceEec
Confidence 012 5678999 5654432 234444445554
Q ss_pred ccccccCccceeEEEEccccchhhhHHHHHHhhhcCCCCcEEEEEcch---hHHHHHHHHHHhcCCeEEEEcCCCCHHHH
Q psy9620 263 SLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETK---RKVDKITKSIQNYGWAAVGIHGDKSQQER 339 (453)
Q Consensus 263 ~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~lVF~~s~---~~~~~l~~~L~~~~~~~~~~h~~~~~~~r 339 (453)
... ....++.+.+..... +...+.++++.+ ..++||||+++ +.|+.++..|...++.+..+||+|++
T Consensus 296 ~~~-~~~r~I~~~~~~~~~--~~~~L~~ll~~l----~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~~--- 365 (1171)
T TIGR01054 296 GGS-DTLRNVVDVYVEDED--LKETLLEIVKKL----GTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKPK--- 365 (1171)
T ss_pred Ccc-ccccceEEEEEeccc--HHHHHHHHHHHc----CCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCCH---
Confidence 433 233455555543322 234566666543 45899999999 99999999999999999999999973
Q ss_pred HHHHHHHhcCCCcEEEEe----ccCccCCCCCC-CcEEEEcCCCCC
Q psy9620 340 DYVLKEFRNGRAGILVAT----DVAARGLDVDD-VKFVINFDYPNN 380 (453)
Q Consensus 340 ~~~~~~f~~g~~~vLvaT----~~~~~GiDip~-v~~VI~~d~p~s 380 (453)
.++++|++|+++||||| ++++||||+|+ |++|||||+|..
T Consensus 366 -~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~~ 410 (1171)
T TIGR01054 366 -EDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPKF 410 (1171)
T ss_pred -HHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCCCE
Confidence 68999999999999994 99999999999 899999999964
|
Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA. |
| >PRK13766 Hef nuclease; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.9e-28 Score=259.17 Aligned_cols=126 Identities=29% Similarity=0.474 Sum_probs=111.0
Q ss_pred chhhhHHHHHHhhhc-CCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCC--------CCHHHHHHHHHHHhcCCCcE
Q psy9620 283 EKENKLFGLLNDISS-KDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGD--------KSQQERDYVLKEFRNGRAGI 353 (453)
Q Consensus 283 ~k~~~l~~ll~~~~~-~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~--------~~~~~r~~~~~~f~~g~~~v 353 (453)
.|...|.++|..+.. ....++||||+++..|+.|++.|...++.+..+||. |++.+|..++++|++|+.+|
T Consensus 347 pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g~~~v 426 (773)
T PRK13766 347 PKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDGDKGMSQKEQIEILDKFRAGEFNV 426 (773)
T ss_pred hHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEccccccccCCCCHHHHHHHHHHHHcCCCCE
Confidence 345556666655432 356799999999999999999999999999999886 99999999999999999999
Q ss_pred EEEeccCccCCCCCCCcEEEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcCCCh
Q psy9620 354 LVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNS 409 (453)
Q Consensus 354 LvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~ 409 (453)
||||+++++|+|+|++++||+||+|.+...|+||+||+||.+ +|.++++++....
T Consensus 427 LvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~-~~~v~~l~~~~t~ 481 (773)
T PRK13766 427 LVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQE-EGRVVVLIAKGTR 481 (773)
T ss_pred EEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCC-CCEEEEEEeCCCh
Confidence 999999999999999999999999999999999999999985 5889998886543
|
|
| >KOG0354|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.2e-28 Score=241.64 Aligned_cols=265 Identities=26% Similarity=0.320 Sum_probs=185.6
Q ss_pred CCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhcC
Q psy9620 132 GFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGS 211 (453)
Q Consensus 132 g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~~ 211 (453)
..-.++.+|.+.+..+| ++|+|+++|||+|||+++...++.++...+ ..++|+++||+-|+.|+...+..++.
T Consensus 59 ~~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p------~~KiVF~aP~~pLv~QQ~a~~~~~~~ 131 (746)
T KOG0354|consen 59 TNLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRP------KGKVVFLAPTRPLVNQQIACFSIYLI 131 (746)
T ss_pred CcccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCC------cceEEEeeCCchHHHHHHHHHhhccC
Confidence 34489999999999999 999999999999999999998888887653 36799999999999999988887765
Q ss_pred CCCceEEEEeCCcc-CCCC-------------------------------------------------------------
Q psy9620 212 STYLRSTCVYGGAS-KGPQ------------------------------------------------------------- 229 (453)
Q Consensus 212 ~~~~~~~~~~gg~~-~~~~------------------------------------------------------------- 229 (453)
. .++....++.. ....
T Consensus 132 ~--~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~l~~k~ 209 (746)
T KOG0354|consen 132 P--YSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYNNIMREYLDLKN 209 (746)
T ss_pred c--ccceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccHHHHHHHHHHhhh
Confidence 4 34444444422 1111
Q ss_pred CCceEEEEeccCcHHHHHHHHHhhccceEEEeccc--------------------cc-----------------------
Q psy9620 230 PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSL--------------------TL----------------------- 266 (453)
Q Consensus 230 ~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~----------------------- 266 (453)
...|+|.+|||+..+..........-.+.+.+... ..
T Consensus 210 ~~~qILgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p~l~~l~~~ 289 (746)
T KOG0354|consen 210 QGNQILGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEPLLQQLQEE 289 (746)
T ss_pred ccccEEEEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHHHHHHHHhc
Confidence 33499999999875544433222111100000000 00
Q ss_pred ---------------------ccCccceeE----------------------EE------Ec------------------
Q psy9620 267 ---------------------SANHNIQQV----------------------VE------VC------------------ 279 (453)
Q Consensus 267 ---------------------~~~~~i~~~----------------------~~------~~------------------ 279 (453)
....+..+. +. ..
T Consensus 290 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k~~~~~~e 369 (746)
T KOG0354|consen 290 GLIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALKKYLKLELE 369 (746)
T ss_pred CccccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchhHHHHHHhc
Confidence 000000000 00 00
Q ss_pred ----------------------cccchhhhHHHHHHhh-hcCCCCcEEEEEcchhHHHHHHHHHHhc---CCeEEEEc--
Q psy9620 280 ----------------------AEHEKENKLFGLLNDI-SSKDENKTIIFAETKRKVDKITKSIQNY---GWAAVGIH-- 331 (453)
Q Consensus 280 ----------------------~~~~k~~~l~~ll~~~-~~~~~~~~lVF~~s~~~~~~l~~~L~~~---~~~~~~~h-- 331 (453)
....|...+.+++.+. ...+..++||||.++..|+.|..+|... ++....+-
T Consensus 370 ~~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq 449 (746)
T KOG0354|consen 370 ARLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQ 449 (746)
T ss_pred chhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeec
Confidence 0022333333333322 2234569999999999999999999832 22322222
Q ss_pred ------CCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEEEcCCCCChhHHHHhhhcccCCCCcceEEEEEc
Q psy9620 332 ------GDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFT 405 (453)
Q Consensus 332 ------~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~ 405 (453)
.+|++.++.+++++|++|+++|||||+++++||||+.|++||-||.-.|+..++||.|| ||+ +.|.|+++++
T Consensus 450 ~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa-~ns~~vll~t 527 (746)
T KOG0354|consen 450 GKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRA-RNSKCVLLTT 527 (746)
T ss_pred cccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-ccc-cCCeEEEEEc
Confidence 37999999999999999999999999999999999999999999999999999999999 998 7899999999
Q ss_pred CC
Q psy9620 406 QQ 407 (453)
Q Consensus 406 ~~ 407 (453)
..
T Consensus 528 ~~ 529 (746)
T KOG0354|consen 528 GS 529 (746)
T ss_pred ch
Confidence 43
|
|
| >COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-26 Score=229.22 Aligned_cols=293 Identities=21% Similarity=0.255 Sum_probs=222.0
Q ss_pred HHHHHCCCCCCCHHHHHHHHHHhcC------CcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHH
Q psy9620 126 KEVKRQGFDRPTPIQAQGWPIAMSG------SNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELA 199 (453)
Q Consensus 126 ~~l~~~g~~~~~~~Q~~~i~~i~~g------~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La 199 (453)
+.+..+.| ++|..|++++..|... -+-|+++.-|||||++++++++..+. .|..+..++||--||
T Consensus 254 ~~~~~LPF-~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~--------~G~Q~ALMAPTEILA 324 (677)
T COG1200 254 KFLAALPF-KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIE--------AGYQAALMAPTEILA 324 (677)
T ss_pred HHHHhCCC-CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHH--------cCCeeEEeccHHHHH
Confidence 33455677 8999999999998853 24589999999999999999998875 466799999999999
Q ss_pred HHHHHHHHHhcCCCCceEEEEeCCccCCCC--------------------------------------------------
Q psy9620 200 QQIQEVARDFGSSTYLRSTCVYGGASKGPQ-------------------------------------------------- 229 (453)
Q Consensus 200 ~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~-------------------------------------------------- 229 (453)
.|.++.+.++....++++..+.|.......
T Consensus 325 ~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd~V~F~~LgLVIiDEQHRFGV~QR~~L 404 (677)
T COG1200 325 EQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQDKVEFHNLGLVIIDEQHRFGVHQRLAL 404 (677)
T ss_pred HHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhcceeecceeEEEEeccccccHHHHHHH
Confidence 999999999999999999999887654332
Q ss_pred ----C-CceEEEEeccCcHHHHHHHHHhhccceEEEecccccccCccceeEEEEccccchhhhHHHHHHhhhcCCCCcEE
Q psy9620 230 ----P-DRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTI 304 (453)
Q Consensus 230 ----~-~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~l 304 (453)
. ...+++||||+-+. .++-..+.+.-...++.... -...| ...+-..++...+.+.+..-.. ++.++.
T Consensus 405 ~~KG~~~Ph~LvMTATPIPR--TLAlt~fgDldvS~IdElP~-GRkpI---~T~~i~~~~~~~v~e~i~~ei~-~GrQaY 477 (677)
T COG1200 405 REKGEQNPHVLVMTATPIPR--TLALTAFGDLDVSIIDELPP-GRKPI---TTVVIPHERRPEVYERIREEIA-KGRQAY 477 (677)
T ss_pred HHhCCCCCcEEEEeCCCchH--HHHHHHhccccchhhccCCC-CCCce---EEEEeccccHHHHHHHHHHHHH-cCCEEE
Confidence 4 57899999997554 33334444433333333221 11222 2222233445555555544333 467999
Q ss_pred EEEcchhH--------HHHHHHHHHhc--CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEEE
Q psy9620 305 IFAETKRK--------VDKITKSIQNY--GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVIN 374 (453)
Q Consensus 305 VF~~s~~~--------~~~l~~~L~~~--~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~ 374 (453)
|.|+-.++ |+.++..|... ++.+..+||.|...|+++++++|++|+++|||||.+++.|||+|+.+++|.
T Consensus 478 ~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVdVPnATvMVI 557 (677)
T COG1200 478 VVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVIEVGVDVPNATVMVI 557 (677)
T ss_pred EEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeEEEecccCCCCeEEEE
Confidence 99987654 55666667643 567999999999999999999999999999999999999999999999888
Q ss_pred cCCC-CChhHHHHhhhcccCCCCcceEEEEEcCCChHHHHHHHHHHHhcCCCCChHHHHHH
Q psy9620 375 FDYP-NNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDLIDVLTESNHPVDPKLSALA 434 (453)
Q Consensus 375 ~d~p-~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~v~~~l~~~~ 434 (453)
.+.- .-.++..|-.||+||.+..+.|++++.+......++-++++.+...-.--.=.++.
T Consensus 558 e~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~~~~a~~RL~im~~t~DGF~IAE~DLk 618 (677)
T COG1200 558 ENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPLSEVAKQRLKIMRETTDGFVIAEEDLK 618 (677)
T ss_pred echhhhhHHHHHHhccccCCCCcceEEEEEeCCCCChhHHHHHHHHHhcCCcceehhhhHh
Confidence 7753 46889999999999999999999999998877778888888877654433333443
|
|
| >PRK11131 ATP-dependent RNA helicase HrpA; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-27 Score=254.16 Aligned_cols=255 Identities=21% Similarity=0.326 Sum_probs=173.4
Q ss_pred HHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcC----CHHHHHHHHHHHHH-hcCCC
Q psy9620 139 IQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAP----TRELAQQIQEVARD-FGSST 213 (453)
Q Consensus 139 ~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P----tr~La~q~~~~~~~-~~~~~ 213 (453)
...+.+..+.+++.++++|+||||||+ ++|.+...... +....+++..| +++||.++.+++.. ++...
T Consensus 78 ~r~~Il~ai~~~~VviI~GeTGSGKTT--qlPq~lle~g~-----g~~g~I~~TQPRRlAArsLA~RVA~El~~~lG~~V 150 (1294)
T PRK11131 78 KKQDILEAIRDHQVVIVAGETGSGKTT--QLPKICLELGR-----GVKGLIGHTQPRRLAARTVANRIAEELETELGGCV 150 (1294)
T ss_pred HHHHHHHHHHhCCeEEEECCCCCCHHH--HHHHHHHHcCC-----CCCCceeeCCCcHHHHHHHHHHHHHHHhhhhccee
Confidence 344566667677888899999999998 58855432211 11224555567 46888888888875 44433
Q ss_pred CceEE------------EEeCCc----------------------cC-C---------------CCCCceEEEEeccCcH
Q psy9620 214 YLRST------------CVYGGA----------------------SK-G---------------PQPDRQVLMWSATWPR 243 (453)
Q Consensus 214 ~~~~~------------~~~gg~----------------------~~-~---------------~~~~~q~v~~SAT~~~ 243 (453)
++.+. +.+.|. .. . ..++.|+|+||||++.
T Consensus 151 GY~vrf~~~~s~~t~I~v~TpG~LL~~l~~d~~Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~rpdlKvILmSATid~ 230 (1294)
T PRK11131 151 GYKVRFNDQVSDNTMVKLMTDGILLAEIQQDRLLMQYDTIIIDEAHERSLNIDFILGYLKELLPRRPDLKVIITSATIDP 230 (1294)
T ss_pred ceeecCccccCCCCCEEEEChHHHHHHHhcCCccccCcEEEecCccccccccchHHHHHHHhhhcCCCceEEEeeCCCCH
Confidence 33221 111000 00 0 0056899999999975
Q ss_pred HHHHHHHHhhccceEEEecccccccCccceeEEEEcccc------chhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHH
Q psy9620 244 EVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEH------EKENKLFGLLNDISSKDENKTIIFAETKRKVDKIT 317 (453)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~------~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~ 317 (453)
+ .+.+.|...++ +.+.... ..+...+...... +....++..+..+.....+.+||||+++.+++.++
T Consensus 231 e--~fs~~F~~apv-I~V~Gr~----~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~GdILVFLpg~~EIe~la 303 (1294)
T PRK11131 231 E--RFSRHFNNAPI-IEVSGRT----YPVEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGDILIFMSGEREIRDTA 303 (1294)
T ss_pred H--HHHHHcCCCCE-EEEcCcc----ccceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHH
Confidence 3 55555544443 4443222 2233333332211 12223333333344445678999999999999999
Q ss_pred HHHHhcCCe---EEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEEEcCC---------------C-
Q psy9620 318 KSIQNYGWA---AVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVINFDY---------------P- 378 (453)
Q Consensus 318 ~~L~~~~~~---~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~---------------p- 378 (453)
+.|...++. +..+|++|++.+|..+++. .|..+|||||+++++|||||+|++||++++ |
T Consensus 304 e~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~ 381 (1294)
T PRK11131 304 DALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPI 381 (1294)
T ss_pred HHHHhcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCccccccccccCcccCCe
Confidence 999987654 7789999999999999986 578999999999999999999999999863 3
Q ss_pred --CChhHHHHhhhcccCCCCcceEEEEEcCCChH
Q psy9620 379 --NNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSR 410 (453)
Q Consensus 379 --~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~ 410 (453)
.|.++|.||+|||||. .+|.||.++++.+..
T Consensus 382 ~~iSkasa~QRaGRAGR~-~~G~c~rLyte~d~~ 414 (1294)
T PRK11131 382 EPISQASANQRKGRCGRV-SEGICIRLYSEDDFL 414 (1294)
T ss_pred eecCHhhHhhhccccCCC-CCcEEEEeCCHHHHH
Confidence 4568999999999999 799999999976543
|
|
| >TIGR00603 rad25 DNA repair helicase rad25 | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-26 Score=236.38 Aligned_cols=268 Identities=17% Similarity=0.193 Sum_probs=176.9
Q ss_pred CCCHHHHHHHHHHh-cC--CcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhcC
Q psy9620 135 RPTPIQAQGWPIAM-SG--SNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGS 211 (453)
Q Consensus 135 ~~~~~Q~~~i~~i~-~g--~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~~ 211 (453)
.++|+|.+++..++ ++ +..++++|||+|||++.+..+. .+ +..+|||||+.+|+.||.+++.++..
T Consensus 255 ~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~-~l----------~k~tLILvps~~Lv~QW~~ef~~~~~ 323 (732)
T TIGR00603 255 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAAC-TV----------KKSCLVLCTSAVSVEQWKQQFKMWST 323 (732)
T ss_pred CcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHH-Hh----------CCCEEEEeCcHHHHHHHHHHHHHhcC
Confidence 79999999999887 34 4789999999999998765443 22 22499999999999999999998854
Q ss_pred CCCceEEEEeCCccCCC----------------------------------C------------------------CCce
Q psy9620 212 STYLRSTCVYGGASKGP----------------------------------Q------------------------PDRQ 233 (453)
Q Consensus 212 ~~~~~~~~~~gg~~~~~----------------------------------~------------------------~~~q 233 (453)
.....+..+.|+..... . ....
T Consensus 324 l~~~~I~~~tg~~k~~~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA~~fr~il~~l~a~~ 403 (732)
T TIGR00603 324 IDDSQICRFTSDAKERFHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPAAMFRRVLTIVQAHC 403 (732)
T ss_pred CCCceEEEEecCcccccccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccHHHHHHHHHhcCcCc
Confidence 33333333333211100 0 3345
Q ss_pred EEEEeccCcHHHHH--HHHHhhccceEEEecccccccCcc---ceeEEEEc-----------------------cccchh
Q psy9620 234 VLMWSATWPREVQK--LAEDFLDSYIQINIGSLTLSANHN---IQQVVEVC-----------------------AEHEKE 285 (453)
Q Consensus 234 ~v~~SAT~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~---i~~~~~~~-----------------------~~~~k~ 285 (453)
.+.+|||+..+-.. .+..++ .+.........+....- ++.....+ ....|.
T Consensus 404 RLGLTATP~ReD~~~~~L~~Li-GP~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k~~l~~~np~K~ 482 (732)
T TIGR00603 404 KLGLTATLVREDDKITDLNFLI-GPKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRKRMLLYVMNPNKF 482 (732)
T ss_pred EEEEeecCcccCCchhhhhhhc-CCeeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchhhhHHhhhChHHH
Confidence 78899997532211 111111 12111111111000000 00000000 111222
Q ss_pred hhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcC-CCcEEEEeccCccCC
Q psy9620 286 NKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNG-RAGILVATDVAARGL 364 (453)
Q Consensus 286 ~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g-~~~vLvaT~~~~~Gi 364 (453)
..+..+++.. .....++||||.+...++.++..| .+.++||.+++.+|..++++|+.+ .+++||+|+++.+||
T Consensus 483 ~~~~~Li~~h-e~~g~kiLVF~~~~~~l~~~a~~L-----~~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~SkVgdeGI 556 (732)
T TIGR00603 483 RACQFLIRFH-EQRGDKIIVFSDNVFALKEYAIKL-----GKPFIYGPTSQQERMQILQNFQHNPKVNTIFLSKVGDTSI 556 (732)
T ss_pred HHHHHHHHHH-hhcCCeEEEEeCCHHHHHHHHHHc-----CCceEECCCCHHHHHHHHHHHHhCCCccEEEEeccccccc
Confidence 3333344332 134679999999999999998887 246689999999999999999975 789999999999999
Q ss_pred CCCCCcEEEEcCCC-CChhHHHHhhhcccCCCCcceE-------EEEEcCCCh--HHHHHHHHHHH
Q psy9620 365 DVDDVKFVINFDYP-NNSEDYIHRIGRTGRSDNTGTS-------YTFFTQQNS--RQAKDLIDVLT 420 (453)
Q Consensus 365 Dip~v~~VI~~d~p-~s~~~y~qr~GRagR~g~~g~~-------~~~~~~~~~--~~~~~l~~~l~ 420 (453)
|+|++++||+++.| .|...|+||+||++|.+..+.+ |.|++++.. .+..+-..+|.
T Consensus 557 DlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E~~~s~~Rq~fl~ 622 (732)
T TIGR00603 557 DLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQEMYYSTKRQRFLV 622 (732)
T ss_pred CCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchHHHHHHHHHHHHH
Confidence 99999999999988 5999999999999999766654 788887643 33334444444
|
All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK05580 primosome assembly protein PriA; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.5e-26 Score=239.10 Aligned_cols=263 Identities=20% Similarity=0.219 Sum_probs=182.6
Q ss_pred CCCHHHHHHHHHHhcC---CcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhcC
Q psy9620 135 RPTPIQAQGWPIAMSG---SNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGS 211 (453)
Q Consensus 135 ~~~~~Q~~~i~~i~~g---~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~~ 211 (453)
.+++.|+++++.+.++ +++++.++||||||.+|+.++...+.. +.++|||+||++|+.|+.+.+++.+
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~--------g~~vLvLvPt~~L~~Q~~~~l~~~f- 214 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQ--------GKQALVLVPEIALTPQMLARFRARF- 214 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHc--------CCeEEEEeCcHHHHHHHHHHHHHHh-
Confidence 6899999999999874 789999999999999998887766542 5579999999999999999998753
Q ss_pred CCCceEEEEeCCccCCCC--------------------------------------------------------------
Q psy9620 212 STYLRSTCVYGGASKGPQ-------------------------------------------------------------- 229 (453)
Q Consensus 212 ~~~~~~~~~~gg~~~~~~-------------------------------------------------------------- 229 (453)
+.++..++++.+....
T Consensus 215 --g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~va~~ra~~ 292 (679)
T PRK05580 215 --GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALFLPFKNLGLIIVDEEHDSSYKQQEGPRYHARDLAVVRAKL 292 (679)
T ss_pred --CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhcccccCCCEEEEECCCccccccCcCCCCcHHHHHHHHhhc
Confidence 3456666665432110
Q ss_pred CCceEEEEeccCcHHHHHHHHHhhccceEEEecccccccCccceeEEEEcccc------chhhhHHHHHHhhhcCCCCcE
Q psy9620 230 PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEH------EKENKLFGLLNDISSKDENKT 303 (453)
Q Consensus 230 ~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~------~k~~~l~~ll~~~~~~~~~~~ 303 (453)
.+.+++++|||++.+....+.. .....+................+.+.... .-...+.+.+++.. ..+.++
T Consensus 293 ~~~~~il~SATps~~s~~~~~~--g~~~~~~l~~r~~~~~~p~v~~id~~~~~~~~~~~~ls~~l~~~i~~~l-~~g~qv 369 (679)
T PRK05580 293 ENIPVVLGSATPSLESLANAQQ--GRYRLLRLTKRAGGARLPEVEIIDMRELLRGENGSFLSPPLLEAIKQRL-ERGEQV 369 (679)
T ss_pred cCCCEEEEcCCCCHHHHHHHhc--cceeEEEeccccccCCCCeEEEEechhhhhhcccCCCCHHHHHHHHHHH-HcCCeE
Confidence 4578999999977554443321 12222222211100101111111111100 01123334444332 235589
Q ss_pred EEEEcchh------------------------------------------------------------HHHHHHHHHHhc
Q psy9620 304 IIFAETKR------------------------------------------------------------KVDKITKSIQNY 323 (453)
Q Consensus 304 lVF~~s~~------------------------------------------------------------~~~~l~~~L~~~ 323 (453)
|||+|++. .++++++.|.+.
T Consensus 370 ll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~~~e~l~~~ 449 (679)
T PRK05580 370 LLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTERLEEELAEL 449 (679)
T ss_pred EEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHHHHHHHHHHh
Confidence 99988631 356888888775
Q ss_pred --CCeEEEEcCCCC--HHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEEE--cCCCCCh----------hHHHHh
Q psy9620 324 --GWAAVGIHGDKS--QQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVIN--FDYPNNS----------EDYIHR 387 (453)
Q Consensus 324 --~~~~~~~h~~~~--~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~--~d~p~s~----------~~y~qr 387 (453)
+.++..+|+++. ..+++.++++|++|+.+|||+|+++++|+|+|+|++|+. .|.+.+. ..|+|+
T Consensus 450 fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~Er~~~~l~q~ 529 (679)
T PRK05580 450 FPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRASERTFQLLTQV 529 (679)
T ss_pred CCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccchHHHHHHHHHHH
Confidence 788999999987 467899999999999999999999999999999999854 4544433 568999
Q ss_pred hhcccCCCCcceEEEEEcCCChHH
Q psy9620 388 IGRTGRSDNTGTSYTFFTQQNSRQ 411 (453)
Q Consensus 388 ~GRagR~g~~g~~~~~~~~~~~~~ 411 (453)
+||+||.+..|.+++.....+...
T Consensus 530 ~GRagR~~~~g~viiqT~~p~~~~ 553 (679)
T PRK05580 530 AGRAGRAEKPGEVLIQTYHPEHPV 553 (679)
T ss_pred HhhccCCCCCCEEEEEeCCCCCHH
Confidence 999999999999998776554333
|
|
| >KOG0951|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-26 Score=236.96 Aligned_cols=294 Identities=17% Similarity=0.236 Sum_probs=219.4
Q ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhc-CCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCC---CCCcEEEEEcC
Q psy9620 119 NFPDYVLKEVKRQGFDRPTPIQAQGWPIAMS-GSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKP---GDGPIVLVLAP 194 (453)
Q Consensus 119 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~-g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~---~~~~~vlil~P 194 (453)
.+|++-..++. |...++.+|....++++. ..++++|||||+|||..+++-+|+.+........ -...++++++|
T Consensus 295 elP~Wnq~aF~--g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAP 372 (1674)
T KOG0951|consen 295 ELPKWNQPAFF--GKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAP 372 (1674)
T ss_pred CCcchhhhhcc--cchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEee
Confidence 46666655554 566799999999999886 4689999999999999999999998876544221 12447999999
Q ss_pred CHHHHHHHHHHHHHhcCCCCceEEEEeCCccCCCC---------------------------------------------
Q psy9620 195 TRELAQQIQEVARDFGSSTYLRSTCVYGGASKGPQ--------------------------------------------- 229 (453)
Q Consensus 195 tr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~--------------------------------------------- 229 (453)
+++|++.+...+.+.....+++|..++|+.....+
T Consensus 373 mKaLvqE~VgsfSkRla~~GI~V~ElTgD~~l~~~qieeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHLLhDd 452 (1674)
T KOG0951|consen 373 MKALVQEMVGSFSKRLAPLGITVLELTGDSQLGKEQIEETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHLLHDD 452 (1674)
T ss_pred HHHHHHHHHHHHHhhccccCcEEEEecccccchhhhhhcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhhhcccc
Confidence 99999999999999888999999999998654332
Q ss_pred --------------------CCceEEEEeccCcHHHHHHHHHhhccceEEEecccccccCccceeEEEEccccchhhhHH
Q psy9620 230 --------------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLF 289 (453)
Q Consensus 230 --------------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~ 289 (453)
....++.+|||+|. ..+.+..+..++..+...... -.+..++|.+.-+.+.....++.
T Consensus 453 RGpvLESIVaRt~r~ses~~e~~RlVGLSATLPN-y~DV~~Fl~v~~~glf~fd~s-yRpvPL~qq~Igi~ek~~~~~~q 530 (1674)
T KOG0951|consen 453 RGPVLESIVARTFRRSESTEEGSRLVGLSATLPN-YEDVASFLRVDPEGLFYFDSS-YRPVPLKQQYIGITEKKPLKRFQ 530 (1674)
T ss_pred cchHHHHHHHHHHHHhhhcccCceeeeecccCCc-hhhhHHHhccCcccccccCcc-cCcCCccceEeccccCCchHHHH
Confidence 46789999999964 556655555555333333222 23345566665555544443322
Q ss_pred HHHH----hh-hcCCCCcEEEEEcchhHHHHHHHHHHh-------------------------------------cCCeE
Q psy9620 290 GLLN----DI-SSKDENKTIIFAETKRKVDKITKSIQN-------------------------------------YGWAA 327 (453)
Q Consensus 290 ~ll~----~~-~~~~~~~~lVF~~s~~~~~~l~~~L~~-------------------------------------~~~~~ 327 (453)
.+-+ ++ ....++++||||.+++++.+.|+.++. ..+.+
T Consensus 531 amNe~~yeKVm~~agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygf 610 (1674)
T KOG0951|consen 531 AMNEACYEKVLEHAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGF 610 (1674)
T ss_pred HHHHHHHHHHHHhCCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccc
Confidence 2211 11 123457999999999999988888873 13457
Q ss_pred EEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEEE----cCC------CCChhHHHHhhhcccCCCCc
Q psy9620 328 VGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVIN----FDY------PNNSEDYIHRIGRTGRSDNT 397 (453)
Q Consensus 328 ~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~----~d~------p~s~~~y~qr~GRagR~g~~ 397 (453)
+++|++|+..+|..+.+.|++|.++|||+|..++||+++|+.+++|- ||+ +.++.+.+||.|||||.+.+
T Consensus 611 aIHhAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp~~D 690 (1674)
T KOG0951|consen 611 AIHHAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRPQYD 690 (1674)
T ss_pred eeeccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCCCccC
Confidence 89999999999999999999999999999999999999999998884 554 45788999999999999654
Q ss_pred --ceEEEEEcCCChHHHHHHH
Q psy9620 398 --GTSYTFFTQQNSRQAKDLI 416 (453)
Q Consensus 398 --g~~~~~~~~~~~~~~~~l~ 416 (453)
|..++.....+......++
T Consensus 691 ~~gegiiit~~se~qyyls~m 711 (1674)
T KOG0951|consen 691 TCGEGIIITDHSELQYYLSLM 711 (1674)
T ss_pred cCCceeeccCchHhhhhHHhh
Confidence 5666666555555444433
|
|
| >PRK09694 helicase Cas3; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.9e-25 Score=231.21 Aligned_cols=293 Identities=19% Similarity=0.233 Sum_probs=188.1
Q ss_pred CCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhcCCC
Q psy9620 134 DRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGSST 213 (453)
Q Consensus 134 ~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~~~~ 213 (453)
..|+|+|+.+........-+|+.||||+|||.++++++...+... ....++|..||+++++|+++.+.++....
T Consensus 285 ~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~~~------~~~gi~~aLPT~Atan~m~~Rl~~~~~~~ 358 (878)
T PRK09694 285 YQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLIDQG------LADSIIFALPTQATANAMLSRLEALASKL 358 (878)
T ss_pred CCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHHhC------CCCeEEEECcHHHHHHHHHHHHHHHHHHh
Confidence 389999998865544566789999999999999877665433221 23469999999999999999887532211
Q ss_pred --CceEEEEeCCccC------------------------------C-CC-------------------------------
Q psy9620 214 --YLRSTCVYGGASK------------------------------G-PQ------------------------------- 229 (453)
Q Consensus 214 --~~~~~~~~gg~~~------------------------------~-~~------------------------------- 229 (453)
...+..++|.... . ..
T Consensus 359 f~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~L 438 (878)
T PRK09694 359 FPSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGL 438 (878)
T ss_pred cCCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhh
Confidence 2345555543210 0 00
Q ss_pred ------------------------------CCceEEEEeccCcHHHHHH-HHHhhcc-c-------eEEEec------cc
Q psy9620 230 ------------------------------PDRQVLMWSATWPREVQKL-AEDFLDS-Y-------IQINIG------SL 264 (453)
Q Consensus 230 ------------------------------~~~q~v~~SAT~~~~~~~~-~~~~~~~-~-------~~~~~~------~~ 264 (453)
....+|+||||+|...++. .+.+-.. . ..+... ..
T Consensus 439 a~svvIiDEVHAyD~ym~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~~~~~~ 518 (878)
T PRK09694 439 GRSVLIVDEVHAYDAYMYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGVNGAQRF 518 (878)
T ss_pred ccCeEEEechhhCCHHHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhccccccccccccccccccccccceee
Confidence 4568999999999877643 3333111 0 000000 00
Q ss_pred ccccC---ccceeEEEE--c--cccchhhhHH-HHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcC---CeEEEEcCC
Q psy9620 265 TLSAN---HNIQQVVEV--C--AEHEKENKLF-GLLNDISSKDENKTIIFAETKRKVDKITKSIQNYG---WAAVGIHGD 333 (453)
Q Consensus 265 ~~~~~---~~i~~~~~~--~--~~~~k~~~l~-~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~---~~~~~~h~~ 333 (453)
..... ......+.+ . ........++ .+++.+ ...+++||||||++.|+.+++.|++.. ..+..+|+.
T Consensus 519 ~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~--~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsr 596 (878)
T PRK09694 519 DLSAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAA--NAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHAR 596 (878)
T ss_pred eccccccccCcceEEEEEeeccccccCHHHHHHHHHHHH--hcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCC
Confidence 00000 001111111 1 1111112222 333332 245689999999999999999999764 679999999
Q ss_pred CCHHHH----HHHHHHH-hcCC---CcEEEEeccCccCCCCCCCcEEEEcCCCCChhHHHHhhhcccCCCCc----c---
Q psy9620 334 KSQQER----DYVLKEF-RNGR---AGILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNT----G--- 398 (453)
Q Consensus 334 ~~~~~r----~~~~~~f-~~g~---~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~----g--- 398 (453)
++..+| .++++.| ++++ ..|||||+++++|||| +++++|....| ++.++||+||++|.+.. |
T Consensus 597 f~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~~~rp~~~~~ 673 (878)
T PRK09694 597 FTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHRKYRPAGFEI 673 (878)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCCCCCCCCCcC
Confidence 999999 4577788 6666 4799999999999999 68999998888 88999999999998642 2
Q ss_pred -eEEEEEcCC-----------ChHHHHHHHHHHHhcC---CCCChHHHHHHhhc
Q psy9620 399 -TSYTFFTQQ-----------NSRQAKDLIDVLTESN---HPVDPKLSALASRS 437 (453)
Q Consensus 399 -~~~~~~~~~-----------~~~~~~~l~~~l~~~~---~~v~~~l~~~~~~~ 437 (453)
.++++..+. +...+..-.++|++.+ ..+|+.+..+.+..
T Consensus 674 p~~~V~~p~~~~~~~~~~VY~~~~~L~rT~~~L~~~~~~~~~~P~~~~~lve~v 727 (878)
T PRK09694 674 PVATVLLPDGEGYGRSGYIYGNTRVLWRTEQLLEEHNAASLFFPDAYREWIESV 727 (878)
T ss_pred ceEEEEeccccccCCceeecCchHHHHHHHHHHHhcCCCCcCChHHHHHHHHHH
Confidence 344442221 1112223335566654 56788888877654
|
|
| >PRK12906 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.5e-26 Score=234.00 Aligned_cols=260 Identities=18% Similarity=0.210 Sum_probs=199.1
Q ss_pred CCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhcC
Q psy9620 132 GFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGS 211 (453)
Q Consensus 132 g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~~ 211 (453)
|. .|+++|.-+.-++..|+ |+.+.||+|||+++.+|++..... |..|-|++||.-||.|-++++..+..
T Consensus 78 g~-~~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al~--------G~~v~vvT~neyLA~Rd~e~~~~~~~ 146 (796)
T PRK12906 78 GL-RPFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNALT--------GKGVHVVTVNEYLSSRDATEMGELYR 146 (796)
T ss_pred CC-CCchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHHc--------CCCeEEEeccHHHHHhhHHHHHHHHH
Confidence 55 89999988887777777 999999999999999999877664 55599999999999999999999999
Q ss_pred CCCceEEEEeCCccCCCC--------------------------------------------------------------
Q psy9620 212 STYLRSTCVYGGASKGPQ-------------------------------------------------------------- 229 (453)
Q Consensus 212 ~~~~~~~~~~gg~~~~~~-------------------------------------------------------------- 229 (453)
.+++++.++.++.+....
T Consensus 147 ~LGl~vg~i~~~~~~~~r~~~y~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiDeartPLiisg~ 226 (796)
T PRK12906 147 WLGLTVGLNLNSMSPDEKRAAYNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEARTPLIISGQ 226 (796)
T ss_pred hcCCeEEEeCCCCCHHHHHHHhcCCCeecCCccccccchhhccccchhhhhccCcceeeeccchheeeccCCCceecCCC
Confidence 999999998776433211
Q ss_pred --------------------------------------------------------------------------------
Q psy9620 230 -------------------------------------------------------------------------------- 229 (453)
Q Consensus 230 -------------------------------------------------------------------------------- 229 (453)
T Consensus 227 ~~~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~ 306 (796)
T PRK12906 227 AEKATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTALAHHIDQALR 306 (796)
T ss_pred CCcchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchhhhHHHHHHHHHH
Confidence
Q ss_pred -------------------------------------------------------------------CCceEEEEeccCc
Q psy9620 230 -------------------------------------------------------------------PDRQVLMWSATWP 242 (453)
Q Consensus 230 -------------------------------------------------------------------~~~q~v~~SAT~~ 242 (453)
.-.++..||.|..
T Consensus 307 A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~kl~GmTGTa~ 386 (796)
T PRK12906 307 ANYIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKLSGMTGTAK 386 (796)
T ss_pred HHHHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcchhhccCCCCH
Confidence 1124455666665
Q ss_pred HHHHHHHHHhhccceEEEecccccccCccceeEEEEccccchhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHh
Q psy9620 243 REVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQN 322 (453)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~ 322 (453)
.+..++.+.|-.+.+.+ .... +....-.....+....+|...+...+.... ....|+||||+|+..++.++..|.+
T Consensus 387 ~e~~Ef~~iY~l~vv~I--Ptnk-p~~r~d~~d~i~~t~~~K~~al~~~i~~~~-~~g~pvLI~t~si~~se~ls~~L~~ 462 (796)
T PRK12906 387 TEEEEFREIYNMEVITI--PTNR-PVIRKDSPDLLYPTLDSKFNAVVKEIKERH-AKGQPVLVGTVAIESSERLSHLLDE 462 (796)
T ss_pred HHHHHHHHHhCCCEEEc--CCCC-CeeeeeCCCeEEcCHHHHHHHHHHHHHHHH-hCCCCEEEEeCcHHHHHHHHHHHHH
Confidence 44444433333332221 1111 000001111233344556666666665543 3567999999999999999999999
Q ss_pred cCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCC---CCc-----EEEEcCCCCChhHHHHhhhcccCC
Q psy9620 323 YGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVD---DVK-----FVINFDYPNNSEDYIHRIGRTGRS 394 (453)
Q Consensus 323 ~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip---~v~-----~VI~~d~p~s~~~y~qr~GRagR~ 394 (453)
.++++..+|+.+.+.|+..+...++.|. |+|||++++||+||+ +|. |||+++.|.|...|.|++|||||.
T Consensus 463 ~gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRq 540 (796)
T PRK12906 463 AGIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQ 540 (796)
T ss_pred CCCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccC
Confidence 9999999999988777777777777766 999999999999994 899 999999999999999999999999
Q ss_pred CCcceEEEEEcCCC
Q psy9620 395 DNTGTSYTFFTQQN 408 (453)
Q Consensus 395 g~~g~~~~~~~~~~ 408 (453)
|.+|.+..|++.+|
T Consensus 541 G~~G~s~~~~sleD 554 (796)
T PRK12906 541 GDPGSSRFYLSLED 554 (796)
T ss_pred CCCcceEEEEeccc
Confidence 99999999999876
|
|
| >TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-25 Score=240.27 Aligned_cols=262 Identities=18% Similarity=0.284 Sum_probs=175.1
Q ss_pred CCCCCCHHH---HHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHH
Q psy9620 132 GFDRPTPIQ---AQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARD 208 (453)
Q Consensus 132 g~~~~~~~Q---~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~ 208 (453)
.|...-|+. .+.+..+.+++.+|++|+||||||. ++|.+..-... +...+++++.|.|.-|..++..+.+
T Consensus 61 ~~~~~LPi~~~~~~Il~~l~~~~vvii~g~TGSGKTT--qlPq~lle~~~-----~~~~~I~~tQPRRlAA~svA~RvA~ 133 (1283)
T TIGR01967 61 RYPDNLPVSAKREDIAEAIAENQVVIIAGETGSGKTT--QLPKICLELGR-----GSHGLIGHTQPRRLAARTVAQRIAE 133 (1283)
T ss_pred cCCCCCCHHHHHHHHHHHHHhCceEEEeCCCCCCcHH--HHHHHHHHcCC-----CCCceEecCCccHHHHHHHHHHHHH
Confidence 344444443 3455566677888999999999997 56765432211 1233577788999888877765554
Q ss_pred -hcCCCCceEEE----------------EeCCccC-----CC---------------------------------CCCce
Q psy9620 209 -FGSSTYLRSTC----------------VYGGASK-----GP---------------------------------QPDRQ 233 (453)
Q Consensus 209 -~~~~~~~~~~~----------------~~gg~~~-----~~---------------------------------~~~~q 233 (453)
++...+..+.. ++.|.-. +. .++.|
T Consensus 134 elg~~lG~~VGY~vR~~~~~s~~T~I~~~TdGiLLr~l~~d~~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~rpdLK 213 (1283)
T TIGR01967 134 ELGTPLGEKVGYKVRFHDQVSSNTLVKLMTDGILLAETQQDRFLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPRRPDLK 213 (1283)
T ss_pred HhCCCcceEEeeEEcCCcccCCCceeeeccccHHHHHhhhCcccccCcEEEEcCcchhhccchhHHHHHHHHHhhCCCCe
Confidence 33222222221 1111000 00 06789
Q ss_pred EEEEeccCcHHHHHHHHHhhccceEEEecccccccCccceeEEEEccc------cchhhhHHHHHHhhhcCCCCcEEEEE
Q psy9620 234 VLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAE------HEKENKLFGLLNDISSKDENKTIIFA 307 (453)
Q Consensus 234 ~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~------~~k~~~l~~ll~~~~~~~~~~~lVF~ 307 (453)
+|+||||++. ..+.+.|...++ +.+..... .+...+..... .++...+...+..+.....+.+|||+
T Consensus 214 lIlmSATld~--~~fa~~F~~apv-I~V~Gr~~----PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~~~GdILVFL 286 (1283)
T TIGR01967 214 IIITSATIDP--ERFSRHFNNAPI-IEVSGRTY----PVEVRYRPLVEEQEDDDLDQLEAILDAVDELFAEGPGDILIFL 286 (1283)
T ss_pred EEEEeCCcCH--HHHHHHhcCCCE-EEECCCcc----cceeEEecccccccchhhhHHHHHHHHHHHHHhhCCCCEEEeC
Confidence 9999999974 455555544443 33332221 12222222111 12334445555555444567999999
Q ss_pred cchhHHHHHHHHHHhcC---CeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEEEcCCC------
Q psy9620 308 ETKRKVDKITKSIQNYG---WAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVINFDYP------ 378 (453)
Q Consensus 308 ~s~~~~~~l~~~L~~~~---~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p------ 378 (453)
+++.+++.+++.|...+ +.+..+||+|++.+|..+++.+ +..+|||||+++++|||||+|++||+++++
T Consensus 287 pg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd 364 (1283)
T TIGR01967 287 PGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYS 364 (1283)
T ss_pred CCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCccccccc
Confidence 99999999999998764 4688999999999999997654 347999999999999999999999998854
Q ss_pred ------------CChhHHHHhhhcccCCCCcceEEEEEcCCChH
Q psy9620 379 ------------NNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSR 410 (453)
Q Consensus 379 ------------~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~ 410 (453)
.|.++|.||+|||||.+ +|.||.++++++..
T Consensus 365 ~~~~~~~L~~~~ISkasa~QRaGRAGR~~-~G~cyRLyte~~~~ 407 (1283)
T TIGR01967 365 YRTKVQRLPIEPISQASANQRKGRCGRVA-PGICIRLYSEEDFN 407 (1283)
T ss_pred cccCccccCCccCCHHHHHHHhhhhCCCC-CceEEEecCHHHHH
Confidence 35689999999999996 99999999976543
|
This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing. |
| >TIGR00595 priA primosomal protein N' | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-24 Score=218.65 Aligned_cols=241 Identities=21% Similarity=0.251 Sum_probs=161.4
Q ss_pred EEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhcCCCCceEEEEeCCccCCCC----
Q psy9620 154 VGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGSSTYLRSTCVYGGASKGPQ---- 229 (453)
Q Consensus 154 li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~---- 229 (453)
|+.|+||||||.+|+..+...+. .+.++|||+|+++|+.|+.+.+++.+ +.++..++++.+....
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~--------~g~~vLvlvP~i~L~~Q~~~~l~~~f---~~~v~vlhs~~~~~er~~~~ 69 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLA--------LGKSVLVLVPEIALTPQMIQRFKYRF---GSQVAVLHSGLSDSEKLQAW 69 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHH--------cCCeEEEEeCcHHHHHHHHHHHHHHh---CCcEEEEECCCCHHHHHHHH
Confidence 47899999999999766544442 35579999999999999999998753 3455566655432110
Q ss_pred ----------------------------------------------------------CCceEEEEeccCcHHHHHHHHH
Q psy9620 230 ----------------------------------------------------------PDRQVLMWSATWPREVQKLAED 251 (453)
Q Consensus 230 ----------------------------------------------------------~~~q~v~~SAT~~~~~~~~~~~ 251 (453)
.+.++|++|||+..+....+.
T Consensus 70 ~~~~~g~~~IVVGTrsalf~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~~~~~vil~SATPsles~~~~~- 148 (505)
T TIGR00595 70 RKVKNGEILVVIGTRSALFLPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKKFNCPVVLGSATPSLESYHNAK- 148 (505)
T ss_pred HHHHcCCCCEEECChHHHcCcccCCCEEEEECCCccccccccCCCCcHHHHHHHHHHhcCCCEEEEeCCCCHHHHHHHh-
Confidence 468899999996654433322
Q ss_pred hhccceEEEecccccccCccceeEEEEcccc---chhhhHHHHHHhhhcCCCCcEEEEEcchhH----------------
Q psy9620 252 FLDSYIQINIGSLTLSANHNIQQVVEVCAEH---EKENKLFGLLNDISSKDENKTIIFAETKRK---------------- 312 (453)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~---------------- 312 (453)
......+..............+.+.+..+. .-...+++.+.+... .+.++|||+|++..
T Consensus 149 -~g~~~~~~l~~r~~~~~~p~v~vid~~~~~~~~~ls~~l~~~i~~~l~-~g~qvLvflnrrGya~~~~C~~Cg~~~~C~ 226 (505)
T TIGR00595 149 -QKAYRLLVLTRRVSGRKPPEVKLIDMRKEPRQSFLSPELITAIEQTLA-AGEQSILFLNRRGYSKNLLCRSCGYILCCP 226 (505)
T ss_pred -cCCeEEeechhhhcCCCCCeEEEEecccccccCCccHHHHHHHHHHHH-cCCcEEEEEeCCcCCCeeEhhhCcCccCCC
Confidence 112222222111111111111122211111 011234444444332 35689999887643
Q ss_pred --------------------------------------------HHHHHHHHHhc--CCeEEEEcCCCCHHHH--HHHHH
Q psy9620 313 --------------------------------------------VDKITKSIQNY--GWAAVGIHGDKSQQER--DYVLK 344 (453)
Q Consensus 313 --------------------------------------------~~~l~~~L~~~--~~~~~~~h~~~~~~~r--~~~~~ 344 (453)
++++.+.|.+. +..+..+|++++..++ +.+++
T Consensus 227 ~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~ 306 (505)
T TIGR00595 227 NCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARIARIDSDTTSRKGAHEALLN 306 (505)
T ss_pred CCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcEEEEecccccCccHHHHHHH
Confidence 47888888876 7789999999987766 89999
Q ss_pred HHhcCCCcEEEEeccCccCCCCCCCcEEE--EcCCCCC----------hhHHHHhhhcccCCCCcceEEEEEcCCC
Q psy9620 345 EFRNGRAGILVATDVAARGLDVDDVKFVI--NFDYPNN----------SEDYIHRIGRTGRSDNTGTSYTFFTQQN 408 (453)
Q Consensus 345 ~f~~g~~~vLvaT~~~~~GiDip~v~~VI--~~d~p~s----------~~~y~qr~GRagR~g~~g~~~~~~~~~~ 408 (453)
+|++|+.+|||+|+++++|+|+|+|++|+ ++|...+ ...|+|++||+||.++.|.+++.....+
T Consensus 307 ~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~~g~viiqt~~p~ 382 (505)
T TIGR00595 307 QFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDPGQVIIQTYNPN 382 (505)
T ss_pred HHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCCCCCEEEEEeCCCC
Confidence 99999999999999999999999999875 5554222 4568999999999999999987654443
|
All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK04914 ATP-dependent helicase HepA; Validated | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.8e-23 Score=220.87 Aligned_cols=123 Identities=19% Similarity=0.272 Sum_probs=107.8
Q ss_pred CCCcEEEEEcchhHHHHHHHHHH-hcCCeEEEEcCCCCHHHHHHHHHHHhcC--CCcEEEEeccCccCCCCCCCcEEEEc
Q psy9620 299 DENKTIIFAETKRKVDKITKSIQ-NYGWAAVGIHGDKSQQERDYVLKEFRNG--RAGILVATDVAARGLDVDDVKFVINF 375 (453)
Q Consensus 299 ~~~~~lVF~~s~~~~~~l~~~L~-~~~~~~~~~h~~~~~~~r~~~~~~f~~g--~~~vLvaT~~~~~GiDip~v~~VI~~ 375 (453)
...|+||||+++..++.+++.|+ ..|+.+..+||+|++.+|..+++.|+++ .++|||||+++++|+|++.+++||+|
T Consensus 492 ~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTdvgseGlNlq~a~~VInf 571 (956)
T PRK04914 492 RSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSEIGSEGRNFQFASHLVLF 571 (956)
T ss_pred CCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEechhhccCCCcccccEEEEe
Confidence 46799999999999999999995 5699999999999999999999999984 59999999999999999999999999
Q ss_pred CCCCChhHHHHhhhcccCCCCcceEEEEEcCCChHHHHHHHHHHHh
Q psy9620 376 DYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDLIDVLTE 421 (453)
Q Consensus 376 d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~l~~ 421 (453)
|+|+|+..|.||+||++|.|+.+.+.+++..........+.+.+.+
T Consensus 572 DlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~~~~ 617 (956)
T PRK04914 572 DLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERLFRWYHE 617 (956)
T ss_pred cCCCCHHHHHHHhcccccCCCCceEEEEEccCCCCHHHHHHHHHhh
Confidence 9999999999999999999999887666665444444455554444
|
|
| >COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.4e-23 Score=214.87 Aligned_cols=283 Identities=19% Similarity=0.207 Sum_probs=215.5
Q ss_pred CHHHHHHHHH-CCCCCCCHHHHHHHHHHhc----CC--cEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEc
Q psy9620 121 PDYVLKEVKR-QGFDRPTPIQAQGWPIAMS----GS--NMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLA 193 (453)
Q Consensus 121 ~~~l~~~l~~-~g~~~~~~~Q~~~i~~i~~----g~--d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~ 193 (453)
+..+.+.+.+ +.| ..|+-|..||..+.+ ++ |-|+|+.-|.|||.+++-+++..++. |+.|.|||
T Consensus 580 d~~~q~~F~~~FPy-eET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~--------GKQVAvLV 650 (1139)
T COG1197 580 DTEWQEEFEASFPY-EETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMD--------GKQVAVLV 650 (1139)
T ss_pred ChHHHHHHHhcCCC-cCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcC--------CCeEEEEc
Confidence 3444444443 355 789999999998874 44 77999999999999999999888764 67799999
Q ss_pred CCHHHHHHHHHHHHHhcCCCCceEEEEeCCccCCCC--------------------------------------------
Q psy9620 194 PTRELAQQIQEVARDFGSSTYLRSTCVYGGASKGPQ-------------------------------------------- 229 (453)
Q Consensus 194 Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~-------------------------------------------- 229 (453)
||--||+|.++.+++.+.+.++++..+.--.+...+
T Consensus 651 PTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL~kdv~FkdLGLlIIDEEqRFGV 730 (1139)
T COG1197 651 PTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLLSKDVKFKDLGLLIIDEEQRFGV 730 (1139)
T ss_pred ccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhhCCCcEEecCCeEEEechhhcCc
Confidence 999999999999999999999988876543332222
Q ss_pred ----------CCceEEEEeccCcHHHHHHHHHhhccceEEEecccccccCccceeEEEEccccchhhhHHHHHHhhhcCC
Q psy9620 230 ----------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKD 299 (453)
Q Consensus 230 ----------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~ 299 (453)
.+..++-+|||+-+....++-.-+++...+...+.. ...++ .++.+.+....-..+++++. .
T Consensus 731 k~KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~---R~pV~---T~V~~~d~~~ireAI~REl~--R 802 (1139)
T COG1197 731 KHKEKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPED---RLPVK---TFVSEYDDLLIREAILRELL--R 802 (1139)
T ss_pred cHHHHHHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhccCCCCC---CcceE---EEEecCChHHHHHHHHHHHh--c
Confidence 677899999998776666666666665444332221 11222 22233333333334555553 3
Q ss_pred CCcEEEEEcchhHHHHHHHHHHhc--CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEEEcCC
Q psy9620 300 ENKTIIFAETKRKVDKITKSIQNY--GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVINFDY 377 (453)
Q Consensus 300 ~~~~lVF~~s~~~~~~l~~~L~~~--~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~ 377 (453)
++++-..+|..+..+.++..|++. ...+.+.||-|+..+-+.++..|-+|+.+|||||.+++.|||||+++.+|.-+.
T Consensus 803 gGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiIIe~A 882 (1139)
T COG1197 803 GGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIIIERA 882 (1139)
T ss_pred CCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEEecc
Confidence 679999999999999999999986 667899999999999999999999999999999999999999999999886554
Q ss_pred C-CChhHHHHhhhcccCCCCcceEEEEEcCCC--hHHHHHHHHHHH
Q psy9620 378 P-NNSEDYIHRIGRTGRSDNTGTSYTFFTQQN--SRQAKDLIDVLT 420 (453)
Q Consensus 378 p-~s~~~y~qr~GRagR~g~~g~~~~~~~~~~--~~~~~~l~~~l~ 420 (453)
- .-.++..|..||+||.+..+.||+++.+.+ ...+.+-++.++
T Consensus 883 D~fGLsQLyQLRGRVGRS~~~AYAYfl~p~~k~lT~~A~kRL~aI~ 928 (1139)
T COG1197 883 DKFGLAQLYQLRGRVGRSNKQAYAYFLYPPQKALTEDAEKRLEAIA 928 (1139)
T ss_pred ccccHHHHHHhccccCCccceEEEEEeecCccccCHHHHHHHHHHH
Confidence 3 468999999999999999999999998643 233444344443
|
|
| >PRK13104 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-23 Score=216.80 Aligned_cols=127 Identities=14% Similarity=0.208 Sum_probs=108.8
Q ss_pred ccccchhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEec
Q psy9620 279 CAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATD 358 (453)
Q Consensus 279 ~~~~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~ 358 (453)
....+|...+.+.+..+. ....|+||||+|+..++.++..|...++++..+|+.+.+.|+..+.+.|+.|. |+|||+
T Consensus 424 ~t~~~k~~av~~~i~~~~-~~g~PVLVgt~Sie~sE~ls~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G~--VtIATN 500 (896)
T PRK13104 424 LTQADKFQAIIEDVRECG-VRKQPVLVGTVSIEASEFLSQLLKKENIKHQVLNAKFHEKEAQIIAEAGRPGA--VTIATN 500 (896)
T ss_pred cCHHHHHHHHHHHHHHHH-hCCCCEEEEeCcHHHHHHHHHHHHHcCCCeEeecCCCChHHHHHHHhCCCCCc--EEEecc
Confidence 344556666665555443 35779999999999999999999999999999999999999999999999994 999999
Q ss_pred cCccCCCCCC---------------------------------C-----cEEEEcCCCCChhHHHHhhhcccCCCCcceE
Q psy9620 359 VAARGLDVDD---------------------------------V-----KFVINFDYPNNSEDYIHRIGRTGRSDNTGTS 400 (453)
Q Consensus 359 ~~~~GiDip~---------------------------------v-----~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~ 400 (453)
+++||+||.= | -|||-...+.|..-=.|-.||+||.|.+|.+
T Consensus 501 mAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss 580 (896)
T PRK13104 501 MAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSS 580 (896)
T ss_pred CccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCce
Confidence 9999999861 1 2788888888888889999999999999999
Q ss_pred EEEEcCCC
Q psy9620 401 YTFFTQQN 408 (453)
Q Consensus 401 ~~~~~~~~ 408 (453)
-.|++-+|
T Consensus 581 ~f~lSleD 588 (896)
T PRK13104 581 RFYLSLED 588 (896)
T ss_pred EEEEEcCc
Confidence 99998766
|
|
| >KOG0948|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.8e-24 Score=210.94 Aligned_cols=257 Identities=18% Similarity=0.252 Sum_probs=192.1
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhcCCCC
Q psy9620 135 RPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGSSTY 214 (453)
Q Consensus 135 ~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~~~~~ 214 (453)
.+.|+|..+|..+-+++++|+.|.|.+|||.++..++...+.. .-+||+.+|-++|.+|-++++..-+..
T Consensus 129 ~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~--------kQRVIYTSPIKALSNQKYREl~~EF~D-- 198 (1041)
T KOG0948|consen 129 TLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLRE--------KQRVIYTSPIKALSNQKYRELLEEFKD-- 198 (1041)
T ss_pred ccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHh--------cCeEEeeChhhhhcchhHHHHHHHhcc--
Confidence 7899999999999999999999999999999999988887765 335999999999999999988775543
Q ss_pred ceEEEEeCCccCCCC-----------------------------------------------------CCceEEEEeccC
Q psy9620 215 LRSTCVYGGASKGPQ-----------------------------------------------------PDRQVLMWSATW 241 (453)
Q Consensus 215 ~~~~~~~gg~~~~~~-----------------------------------------------------~~~q~v~~SAT~ 241 (453)
+...+|+....+. .+...+++|||+
T Consensus 199 --VGLMTGDVTInP~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRDkERGVVWEETIIllP~~vr~VFLSATi 276 (1041)
T KOG0948|consen 199 --VGLMTGDVTINPDASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKERGVVWEETIILLPDNVRFVFLSATI 276 (1041)
T ss_pred --cceeecceeeCCCCceeeeHHHHHHHHHhccchHhheeeeEEeeeehhccccccceeeeeeEEeccccceEEEEeccC
Confidence 3444555444433 567899999999
Q ss_pred cHHHHHHHHHhh---ccceEEEecccccccCccceeEE---------EEcccc-----ch--------------------
Q psy9620 242 PREVQKLAEDFL---DSYIQINIGSLTLSANHNIQQVV---------EVCAEH-----EK-------------------- 284 (453)
Q Consensus 242 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~i~~~~---------~~~~~~-----~k-------------------- 284 (453)
|. ..++++|.+ ..|.++....... -.+++++ .++.+. +.
T Consensus 277 PN-A~qFAeWI~~ihkQPcHVVYTdyRP---TPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~~~~~~~~~ 352 (1041)
T KOG0948|consen 277 PN-ARQFAEWICHIHKQPCHVVYTDYRP---TPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAGESDGKKKA 352 (1041)
T ss_pred CC-HHHHHHHHHHHhcCCceEEeecCCC---CcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhccCCCcccccc
Confidence 75 456677765 3455444332221 1122221 111110 00
Q ss_pred ---------------hhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCC------------------------
Q psy9620 285 ---------------ENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGW------------------------ 325 (453)
Q Consensus 285 ---------------~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~------------------------ 325 (453)
...+..+++.+...+-.|+|||+-++++|+.+|-.|....+
T Consensus 353 ~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~LseeD 432 (1041)
T KOG0948|consen 353 NKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAIDQLSEED 432 (1041)
T ss_pred ccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHhcChhh
Confidence 11344455555555566999999999999999988865322
Q ss_pred ---------------eEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEEE----cCC----CCChh
Q psy9620 326 ---------------AAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVIN----FDY----PNNSE 382 (453)
Q Consensus 326 ---------------~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~----~d~----p~s~~ 382 (453)
.+.++|+++-+--++.+.-.|.+|-+++|+||.+++.|+|.|+-++|+- ||= .-|.-
T Consensus 433 r~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvFT~~rKfDG~~fRwissG 512 (1041)
T KOG0948|consen 433 RELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVFTAVRKFDGKKFRWISSG 512 (1041)
T ss_pred ccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEEeeccccCCcceeeeccc
Confidence 2678999999999999999999999999999999999999999887773 331 13567
Q ss_pred HHHHhhhcccCCCC--cceEEEEEcCC
Q psy9620 383 DYIHRIGRTGRSDN--TGTSYTFFTQQ 407 (453)
Q Consensus 383 ~y~qr~GRagR~g~--~g~~~~~~~~~ 407 (453)
+|+||.|||||.|. .|.||+++++.
T Consensus 513 EYIQMSGRAGRRG~DdrGivIlmiDek 539 (1041)
T KOG0948|consen 513 EYIQMSGRAGRRGIDDRGIVILMIDEK 539 (1041)
T ss_pred ceEEecccccccCCCCCceEEEEecCc
Confidence 89999999999985 48999999875
|
|
| >KOG0947|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.7e-23 Score=210.36 Aligned_cols=260 Identities=18% Similarity=0.216 Sum_probs=189.8
Q ss_pred CCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhc
Q psy9620 131 QGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFG 210 (453)
Q Consensus 131 ~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~ 210 (453)
..| +|..+|++||-++..|.++++.|+|.+|||+++..++..... .+.++++.+|-++|.+|-++.|+.-+
T Consensus 294 ~pF-elD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq~--------h~TR~iYTSPIKALSNQKfRDFk~tF 364 (1248)
T KOG0947|consen 294 YPF-ELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQK--------HMTRTIYTSPIKALSNQKFRDFKETF 364 (1248)
T ss_pred CCC-CccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHHh--------hccceEecchhhhhccchHHHHHHhc
Confidence 355 899999999999999999999999999999998877764433 35679999999999999999998865
Q ss_pred CCCCceEEEEeCCccCCCC-----------------------------------------------------CCceEEEE
Q psy9620 211 SSTYLRSTCVYGGASKGPQ-----------------------------------------------------PDRQVLMW 237 (453)
Q Consensus 211 ~~~~~~~~~~~gg~~~~~~-----------------------------------------------------~~~q~v~~ 237 (453)
...+ .++|+....+. ...++|++
T Consensus 365 ~Dvg----LlTGDvqinPeAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~eRGvVWEEViIMlP~HV~~IlL 440 (1248)
T KOG0947|consen 365 GDVG----LLTGDVQINPEASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDVERGVVWEEVIIMLPRHVNFILL 440 (1248)
T ss_pred cccc----eeecceeeCCCcceEeehHHHHHHHHhcccchhhccceEEEeeeeecccccccccceeeeeeccccceEEEE
Confidence 4433 56666655544 67899999
Q ss_pred eccCcHHHHHHHHHhhc---cceEEEecccccccCccceeEEEE--------------------------------cc--
Q psy9620 238 SATWPREVQKLAEDFLD---SYIQINIGSLTLSANHNIQQVVEV--------------------------------CA-- 280 (453)
Q Consensus 238 SAT~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~~~~~~--------------------------------~~-- 280 (453)
|||.|... +++.|... ..+.+.-.. ..+..+.+++.. ..
T Consensus 441 SATVPN~~-EFA~WIGRtK~K~IyViST~---kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~~~ak~~~~~ 516 (1248)
T KOG0947|consen 441 SATVPNTL-EFADWIGRTKQKTIYVISTS---KRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLKKEAKFVDVE 516 (1248)
T ss_pred eccCCChH-HHHHHhhhccCceEEEEecC---CCccceEEEEEeccceehhhcccchhhhhcchhhhhhhcccccccccc
Confidence 99997644 56666542 222211110 000000000000 00
Q ss_pred -----------------------------ccchh--hhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcC-----
Q psy9620 281 -----------------------------EHEKE--NKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYG----- 324 (453)
Q Consensus 281 -----------------------------~~~k~--~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~----- 324 (453)
...+. ...+.+++.+...+.-|+||||-+++.|++.+++|...+
T Consensus 517 ~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L~~~nL~~~~ 596 (1248)
T KOG0947|consen 517 KSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADYLTNLNLTDSK 596 (1248)
T ss_pred cccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHHHHHhccCcccch
Confidence 00011 246777777766566699999999999999999997521
Q ss_pred ----------------------------------CeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCc
Q psy9620 325 ----------------------------------WAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVK 370 (453)
Q Consensus 325 ----------------------------------~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~ 370 (453)
-.+++|||++-+--++-|+..|..|-++||+||.++++|+|.|+-.
T Consensus 597 EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATETFAMGVNMPARt 676 (1248)
T KOG0947|consen 597 EKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATETFAMGVNMPART 676 (1248)
T ss_pred hHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehhhhhhhcCCCcee
Confidence 1367899999999999999999999999999999999999999988
Q ss_pred EEEEc----C----CCCChhHHHHhhhcccCCCC--cceEEEEEcCC
Q psy9620 371 FVINF----D----YPNNSEDYIHRIGRTGRSDN--TGTSYTFFTQQ 407 (453)
Q Consensus 371 ~VI~~----d----~p~s~~~y~qr~GRagR~g~--~g~~~~~~~~~ 407 (453)
+|+.- | .-..+-+|.||+|||||.|- .|.++++....
T Consensus 677 vVF~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~ 723 (1248)
T KOG0947|consen 677 VVFSSLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDS 723 (1248)
T ss_pred EEeeehhhccCcceeecCChhHHhhhccccccccCcCceEEEEecCC
Confidence 77741 1 11357899999999999974 57777776654
|
|
| >PRK12904 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-23 Score=215.70 Aligned_cols=260 Identities=19% Similarity=0.193 Sum_probs=201.9
Q ss_pred CCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhcC
Q psy9620 132 GFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGS 211 (453)
Q Consensus 132 g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~~ 211 (453)
|. .|+++|.-..-++..|+ |+.++||+|||+++.+|++..... +..|-|++||..||.|.++++..+..
T Consensus 79 g~-~~~dvQlig~l~L~~G~--Iaem~TGeGKTLva~lpa~l~aL~--------G~~V~IvTpn~yLA~rd~e~~~~l~~ 147 (830)
T PRK12904 79 GM-RHFDVQLIGGMVLHEGK--IAEMKTGEGKTLVATLPAYLNALT--------GKGVHVVTVNDYLAKRDAEWMGPLYE 147 (830)
T ss_pred CC-CCCccHHHhhHHhcCCc--hhhhhcCCCcHHHHHHHHHHHHHc--------CCCEEEEecCHHHHHHHHHHHHHHHh
Confidence 55 89999988887777776 899999999999999999643332 33477999999999999999999999
Q ss_pred CCCceEEEEeCCccCCCC--------------------------------------------------------------
Q psy9620 212 STYLRSTCVYGGASKGPQ-------------------------------------------------------------- 229 (453)
Q Consensus 212 ~~~~~~~~~~gg~~~~~~-------------------------------------------------------------- 229 (453)
..++++.++.++.+...+
T Consensus 148 ~LGlsv~~i~~~~~~~er~~~y~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDeArtpLiiSg~ 227 (830)
T PRK12904 148 FLGLSVGVILSGMSPEERREAYAADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEARTPLIISGP 227 (830)
T ss_pred hcCCeEEEEcCCCCHHHHHHhcCCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheeccCCCceeeECC
Confidence 999999999887543321
Q ss_pred --------------------------------------------------------------------------------
Q psy9620 230 -------------------------------------------------------------------------------- 229 (453)
Q Consensus 230 -------------------------------------------------------------------------------- 229 (453)
T Consensus 228 ~~~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~A~~l~~~d~dY 307 (830)
T PRK12904 228 AEDSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAHELFKRDVDY 307 (830)
T ss_pred CCcccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHHHHHHHHhcCCcE
Confidence
Q ss_pred --------------------------------------------------------CCceEEEEeccCcHHHHHHHHHhh
Q psy9620 230 --------------------------------------------------------PDRQVLMWSATWPREVQKLAEDFL 253 (453)
Q Consensus 230 --------------------------------------------------------~~~q~v~~SAT~~~~~~~~~~~~~ 253 (453)
.-.++..||.|...+..++.+.|-
T Consensus 308 iV~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY~ 387 (830)
T PRK12904 308 IVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEFREIYN 387 (830)
T ss_pred EEECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHHHHHHHHHhC
Confidence 123556777887666555555554
Q ss_pred ccceEEEecccccccCccceeEEEEccccchhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCC
Q psy9620 254 DSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGD 333 (453)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~ 333 (453)
.+.+.+....+ ....-.....+....+|...+.+.+.... ....|+||||+|+..++.++..|...++++..+|+.
T Consensus 388 l~vv~IPtnkp---~~r~d~~d~i~~t~~~K~~aI~~~I~~~~-~~grpVLIft~Si~~se~Ls~~L~~~gi~~~vLnak 463 (830)
T PRK12904 388 LDVVVIPTNRP---MIRIDHPDLIYKTEKEKFDAVVEDIKERH-KKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAK 463 (830)
T ss_pred CCEEEcCCCCC---eeeeeCCCeEEECHHHHHHHHHHHHHHHH-hcCCCEEEEeCcHHHHHHHHHHHHHCCCceEeccCc
Confidence 44333221111 00111112233445567777777665543 346799999999999999999999999999999995
Q ss_pred CCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCC--------------------------------------cEEEEc
Q psy9620 334 KSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDV--------------------------------------KFVINF 375 (453)
Q Consensus 334 ~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v--------------------------------------~~VI~~ 375 (453)
+.+|+..+..|+.+...|+|||++++||+||+=- -|||-.
T Consensus 464 --q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigT 541 (830)
T PRK12904 464 --NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGT 541 (830)
T ss_pred --hHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEec
Confidence 8899999999999999999999999999999642 279998
Q ss_pred CCCCChhHHHHhhhcccCCCCcceEEEEEcCCC
Q psy9620 376 DYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQN 408 (453)
Q Consensus 376 d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~ 408 (453)
..|.|..-=.|-.||+||.|.+|.+-.|++-+|
T Consensus 542 erhesrRid~QlrGRagRQGdpGss~f~lSleD 574 (830)
T PRK12904 542 ERHESRRIDNQLRGRSGRQGDPGSSRFYLSLED 574 (830)
T ss_pred ccCchHHHHHHhhcccccCCCCCceeEEEEcCc
Confidence 899999999999999999999999999998766
|
|
| >COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.9e-23 Score=206.30 Aligned_cols=247 Identities=25% Similarity=0.273 Sum_probs=164.4
Q ss_pred CCCHHHHHHHHHHhc----CCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhc
Q psy9620 135 RPTPIQAQGWPIAMS----GSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFG 210 (453)
Q Consensus 135 ~~~~~Q~~~i~~i~~----g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~ 210 (453)
.++++|++++..+.. .+..++++|||+|||++++..+... ...+||||||++|+.|+.+.+....
T Consensus 36 ~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~-----------~~~~Lvlv~~~~L~~Qw~~~~~~~~ 104 (442)
T COG1061 36 ELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAEL-----------KRSTLVLVPTKELLDQWAEALKKFL 104 (442)
T ss_pred CCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHh-----------cCCEEEEECcHHHHHHHHHHHHHhc
Confidence 799999999999987 8899999999999998875544332 2229999999999999987766654
Q ss_pred CCCCceEEEEeCCccCCC------------------------C------------------------CCce-EEEEeccC
Q psy9620 211 SSTYLRSTCVYGGASKGP------------------------Q------------------------PDRQ-VLMWSATW 241 (453)
Q Consensus 211 ~~~~~~~~~~~gg~~~~~------------------------~------------------------~~~q-~v~~SAT~ 241 (453)
... ..+..+.++..... . .... ++.+|||+
T Consensus 105 ~~~-~~~g~~~~~~~~~~~~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~~~~~~~~~~~~~~~LGLTATp 183 (442)
T COG1061 105 LLN-DEIGIYGGGEKELEPAKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPSYRRILELLSAAYPRLGLTATP 183 (442)
T ss_pred CCc-cccceecCceeccCCCcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcHHHHHHHHhhhcccceeeeccCc
Confidence 321 01111111110000 0 2333 89999997
Q ss_pred cHHHHHHHHHhhc--cceEEEecccccccCcc---ceeEEEEc--cc---------------------------------
Q psy9620 242 PREVQKLAEDFLD--SYIQINIGSLTLSANHN---IQQVVEVC--AE--------------------------------- 281 (453)
Q Consensus 242 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~---i~~~~~~~--~~--------------------------------- 281 (453)
+..-......+.. .++.......+...... ........ ..
T Consensus 184 ~R~D~~~~~~l~~~~g~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (442)
T COG1061 184 EREDGGRIGDLFDLIGPIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARGTLRAENEARRIA 263 (442)
T ss_pred eeecCCchhHHHHhcCCeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhhhhhHHHHHHHHh
Confidence 6332111111111 11222211111100000 00000000 00
Q ss_pred cchhhhHHHHHHhhhcC-CCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccC
Q psy9620 282 HEKENKLFGLLNDISSK-DENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVA 360 (453)
Q Consensus 282 ~~k~~~l~~ll~~~~~~-~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~ 360 (453)
......+..+...+... ...++||||.+..+++.++..|...+. +..+++..+..+|+.+++.|+.|..++||++.++
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr~g~~~~lv~~~vl 342 (442)
T COG1061 264 IASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFRTGGIKVLVTVKVL 342 (442)
T ss_pred hccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHHcCCCCEEEEeeec
Confidence 00001111111111111 356999999999999999999998888 8899999999999999999999999999999999
Q ss_pred ccCCCCCCCcEEEEcCCCCChhHHHHhhhcccCC
Q psy9620 361 ARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRS 394 (453)
Q Consensus 361 ~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~ 394 (453)
.+|+|+|+++++|......|...|+||+||.-|.
T Consensus 343 ~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR~ 376 (442)
T COG1061 343 DEGVDIPDADVLIILRPTGSRRLFIQRLGRGLRP 376 (442)
T ss_pred cceecCCCCcEEEEeCCCCcHHHHHHHhhhhccC
Confidence 9999999999999999999999999999999994
|
|
| >COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1e-21 Score=177.65 Aligned_cols=270 Identities=17% Similarity=0.206 Sum_probs=185.0
Q ss_pred CCCCHHHHHHHHHHh----cCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHh
Q psy9620 134 DRPTPIQAQGWPIAM----SGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDF 209 (453)
Q Consensus 134 ~~~~~~Q~~~i~~i~----~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~ 209 (453)
.++++.|+.+-..+. +.+++|+.|-||+|||... ++.++.... .|.++.+.+|....|..++..++.-
T Consensus 96 G~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMi-f~~i~~al~-------~G~~vciASPRvDVclEl~~Rlk~a 167 (441)
T COG4098 96 GTLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMI-FQGIEQALN-------QGGRVCIASPRVDVCLELYPRLKQA 167 (441)
T ss_pred cccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhh-HHHHHHHHh-------cCCeEEEecCcccchHHHHHHHHHh
Confidence 379999998876554 5789999999999999763 444444443 4778999999999999999999887
Q ss_pred cCCCCceEEEEeCCccCCCC----------------------------------------------CCceEEEEeccCcH
Q psy9620 210 GSSTYLRSTCVYGGASKGPQ----------------------------------------------PDRQVLMWSATWPR 243 (453)
Q Consensus 210 ~~~~~~~~~~~~gg~~~~~~----------------------------------------------~~~q~v~~SAT~~~ 243 (453)
+. +..+.+++|+.+...+ ..--+|.+|||.++
T Consensus 168 F~--~~~I~~Lyg~S~~~fr~plvVaTtHQLlrFk~aFD~liIDEVDAFP~~~d~~L~~Av~~ark~~g~~IylTATp~k 245 (441)
T COG4098 168 FS--NCDIDLLYGDSDSYFRAPLVVATTHQLLRFKQAFDLLIIDEVDAFPFSDDQSLQYAVKKARKKEGATIYLTATPTK 245 (441)
T ss_pred hc--cCCeeeEecCCchhccccEEEEehHHHHHHHhhccEEEEeccccccccCCHHHHHHHHHhhcccCceEEEecCChH
Confidence 54 3567788887665443 45568999999988
Q ss_pred HHHHHHHHhhccceEEEecccccccCccceeEEEEccccch-------hhhHHHHHHhhhcCCCCcEEEEEcchhHHHHH
Q psy9620 244 EVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEK-------ENKLFGLLNDISSKDENKTIIFAETKRKVDKI 316 (453)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k-------~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l 316 (453)
.++..+..- +...+.+.......+..+..++ ++....| ..+|..+|+.-. ....+++||+++....+.+
T Consensus 246 ~l~r~~~~g--~~~~~klp~RfH~~pLpvPkf~-w~~~~~k~l~r~kl~~kl~~~lekq~-~~~~P~liF~p~I~~~eq~ 321 (441)
T COG4098 246 KLERKILKG--NLRILKLPARFHGKPLPVPKFV-WIGNWNKKLQRNKLPLKLKRWLEKQR-KTGRPVLIFFPEIETMEQV 321 (441)
T ss_pred HHHHHhhhC--CeeEeecchhhcCCCCCCCceE-EeccHHHHhhhccCCHHHHHHHHHHH-hcCCcEEEEecchHHHHHH
Confidence 766543322 2222333222222222222222 2222211 124445554432 3457999999999999999
Q ss_pred HHHHHhc--CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEEEcCCC--CChhHHHHhhhccc
Q psy9620 317 TKSIQNY--GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVINFDYP--NNSEDYIHRIGRTG 392 (453)
Q Consensus 317 ~~~L~~~--~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p--~s~~~y~qr~GRag 392 (453)
+..|+.. ...+..+|+ ....|.+..++|++|+++|||+|.+++||+.+|+|++++.-.-- .+.+..+|.+||+|
T Consensus 322 a~~lk~~~~~~~i~~Vhs--~d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~vfTesaLVQIaGRvG 399 (441)
T COG4098 322 AAALKKKLPKETIASVHS--EDQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEHRVFTESALVQIAGRVG 399 (441)
T ss_pred HHHHHhhCCccceeeeec--cCccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEecCCcccccHHHHHHHhhhcc
Confidence 9999543 345578888 45688899999999999999999999999999999976643322 56888999999999
Q ss_pred CCC--CcceEEEEEcCCChHHHHHHHHHHH
Q psy9620 393 RSD--NTGTSYTFFTQQNSRQAKDLIDVLT 420 (453)
Q Consensus 393 R~g--~~g~~~~~~~~~~~~~~~~l~~~l~ 420 (453)
|.- .+|..+.| .......+.+....++
T Consensus 400 Rs~~~PtGdv~FF-H~G~skaM~~A~keIk 428 (441)
T COG4098 400 RSLERPTGDVLFF-HYGKSKAMKQARKEIK 428 (441)
T ss_pred CCCcCCCCcEEEE-eccchHHHHHHHHHHH
Confidence 983 33554444 4444444444343333
|
|
| >COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.9e-22 Score=190.07 Aligned_cols=168 Identities=19% Similarity=0.288 Sum_probs=127.9
Q ss_pred CCceEEEEeccCcHHHHHHHHHhhccceEEEecccccccCccceeEEEEccccchhhhHHHHHHhhhcCCCCcEEEEEcc
Q psy9620 230 PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAET 309 (453)
Q Consensus 230 ~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~lVF~~s 309 (453)
...|+|++|||+.+.-.+... .+.+.-.+.+- ..+...+.+-+.....+.|+.-+..... .+.++||-+-|
T Consensus 385 ~~~q~i~VSATPg~~E~e~s~---~~vveQiIRPT-----GLlDP~ievRp~~~QvdDL~~EI~~r~~-~~eRvLVTtLT 455 (663)
T COG0556 385 KIPQTIYVSATPGDYELEQSG---GNVVEQIIRPT-----GLLDPEIEVRPTKGQVDDLLSEIRKRVA-KNERVLVTTLT 455 (663)
T ss_pred hcCCEEEEECCCChHHHHhcc---CceeEEeecCC-----CCCCCceeeecCCCcHHHHHHHHHHHHh-cCCeEEEEeeh
Confidence 457999999997543222111 12222222222 2233334444444444444444444332 35799999999
Q ss_pred hhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEEEcC-----CCCChhHH
Q psy9620 310 KRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVINFD-----YPNNSEDY 384 (453)
Q Consensus 310 ~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d-----~p~s~~~y 384 (453)
++.|+.|.++|.+.|+.+.++|++...-||.+++.+++.|..+|||.-+.+-+|||+|.|.+|..+| +.+|..+.
T Consensus 456 KkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~SL 535 (663)
T COG0556 456 KKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSL 535 (663)
T ss_pred HHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecCccccccccchH
Confidence 9999999999999999999999999999999999999999999999999999999999999999877 45789999
Q ss_pred HHhhhcccCCCCcceEEEEEcCC
Q psy9620 385 IHRIGRTGRSDNTGTSYTFFTQQ 407 (453)
Q Consensus 385 ~qr~GRagR~g~~g~~~~~~~~~ 407 (453)
+|-+|||+|. ..|+++++.+.-
T Consensus 536 IQtIGRAARN-~~GkvIlYAD~i 557 (663)
T COG0556 536 IQTIGRAARN-VNGKVILYADKI 557 (663)
T ss_pred HHHHHHHhhc-cCCeEEEEchhh
Confidence 9999999996 689999987754
|
|
| >TIGR00631 uvrb excinuclease ABC, B subunit | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.7e-22 Score=204.73 Aligned_cols=117 Identities=21% Similarity=0.396 Sum_probs=107.7
Q ss_pred CCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEEEcC--
Q psy9620 299 DENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVINFD-- 376 (453)
Q Consensus 299 ~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d-- 376 (453)
...++||||+|+..++.|++.|...++.+..+|+++++.+|..+++.|+.|++.|||||+++++|+|+|++++||++|
T Consensus 441 ~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rGfDiP~v~lVvi~Dad 520 (655)
T TIGR00631 441 RNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDAD 520 (655)
T ss_pred CCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcCCeeeCCCcEEEEeCcc
Confidence 456899999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ---CCCChhHHHHhhhcccCCCCcceEEEEEcCCChHHHHHHH
Q psy9620 377 ---YPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDLI 416 (453)
Q Consensus 377 ---~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~ 416 (453)
.|.+..+|+||+|||||. ..|.+++|++..+....+.+.
T Consensus 521 ifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~~~~~~~ai~ 562 (655)
T TIGR00631 521 KEGFLRSERSLIQTIGRAARN-VNGKVIMYADKITDSMQKAIE 562 (655)
T ss_pred cccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCCCHHHHHHHH
Confidence 799999999999999998 689999999976644444333
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) |
| >KOG0950|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.5e-23 Score=207.89 Aligned_cols=288 Identities=20% Similarity=0.300 Sum_probs=207.4
Q ss_pred CCHHHHHH-HHHCCCCCCCHHHHHHH--HHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCH
Q psy9620 120 FPDYVLKE-VKRQGFDRPTPIQAQGW--PIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTR 196 (453)
Q Consensus 120 l~~~l~~~-l~~~g~~~~~~~Q~~~i--~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr 196 (453)
+++.+... .+..|...++.+|.+++ +.++.++++|..+||+.|||+++.+.++..+... ...++.+.|..
T Consensus 207 ~~~k~~~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~-------rr~~llilp~v 279 (1008)
T KOG0950|consen 207 LPTKVSHLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCR-------RRNVLLILPYV 279 (1008)
T ss_pred CchHHHHHHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHH-------hhceeEeccee
Confidence 44444443 34458889999999998 5688999999999999999999999988776653 33589999999
Q ss_pred HHHHHHHHHHHHhcCCCCceEEEEeCCccCCCC-----------------------------------------------
Q psy9620 197 ELAQQIQEVARDFGSSTYLRSTCVYGGASKGPQ----------------------------------------------- 229 (453)
Q Consensus 197 ~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~----------------------------------------------- 229 (453)
..++.-...+..+....++.+.+.+|..+....
T Consensus 280 siv~Ek~~~l~~~~~~~G~~ve~y~g~~~p~~~~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~rg 359 (1008)
T KOG0950|consen 280 SIVQEKISALSPFSIDLGFPVEEYAGRFPPEKRRKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKGRG 359 (1008)
T ss_pred ehhHHHHhhhhhhccccCCcchhhcccCCCCCcccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeeccccc
Confidence 999988889999998999999888876554433
Q ss_pred ----------------CCceEEEEeccCcHHHHHHHHHhhccceEEE-ecccccccCccceeEEEEc-------------
Q psy9620 230 ----------------PDRQVLMWSATWPREVQKLAEDFLDSYIQIN-IGSLTLSANHNIQQVVEVC------------- 279 (453)
Q Consensus 230 ----------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~------------- 279 (453)
...|+|.||||+|. +..+ +.+++..+... ..+..+.....+-..+.-.
T Consensus 360 ~~lE~~l~k~~y~~~~~~~~iIGMSATi~N-~~lL-~~~L~A~~y~t~fRPv~L~E~ik~G~~i~~~~r~~~lr~ia~l~ 437 (1008)
T KOG0950|consen 360 AILELLLAKILYENLETSVQIIGMSATIPN-NSLL-QDWLDAFVYTTRFRPVPLKEYIKPGSLIYESSRNKVLREIANLY 437 (1008)
T ss_pred hHHHHHHHHHHHhccccceeEeeeecccCC-hHHH-HHHhhhhheecccCcccchhccCCCcccccchhhHHHHHhhhhh
Confidence 34679999999964 3333 33333322221 1111111111111111000
Q ss_pred ---cccchhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHh----------------------------------
Q psy9620 280 ---AEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQN---------------------------------- 322 (453)
Q Consensus 280 ---~~~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~---------------------------------- 322 (453)
...+..+.++.+..+.. .++.++||||++++.|+.++..+..
T Consensus 438 ~~~~g~~dpD~~v~L~tet~-~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~V 516 (1008)
T KOG0950|consen 438 SSNLGDEDPDHLVGLCTETA-PEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPV 516 (1008)
T ss_pred hhhcccCCCcceeeehhhhh-hcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchH
Confidence 00111234444444432 2345799999999999998866643
Q ss_pred ----cCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEEEcC----CCCChhHHHHhhhcccCC
Q psy9620 323 ----YGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVINFD----YPNNSEDYIHRIGRTGRS 394 (453)
Q Consensus 323 ----~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d----~p~s~~~y~qr~GRagR~ 394 (453)
..+.+.++|++++.++|+.+...|++|...|++||+.++.|+++|..+++|-.- ...+..+|.||+|||||+
T Consensus 517 l~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM~GRAGR~ 596 (1008)
T KOG0950|consen 517 LAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQMVGRAGRT 596 (1008)
T ss_pred HheeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCccccchhhhhhHHhhhhhhhhc
Confidence 124578999999999999999999999999999999999999999999888643 235678999999999999
Q ss_pred CC--cceEEEEEcCCChHHHHHHHH
Q psy9620 395 DN--TGTSYTFFTQQNSRQAKDLID 417 (453)
Q Consensus 395 g~--~g~~~~~~~~~~~~~~~~l~~ 417 (453)
|- .|.+++++.+.+.+...+++.
T Consensus 597 gidT~GdsiLI~k~~e~~~~~~lv~ 621 (1008)
T KOG0950|consen 597 GIDTLGDSILIIKSSEKKRVRELVN 621 (1008)
T ss_pred ccccCcceEEEeeccchhHHHHHHh
Confidence 64 588999999998877775543
|
|
| >PRK13107 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.4e-22 Score=202.07 Aligned_cols=126 Identities=17% Similarity=0.247 Sum_probs=109.1
Q ss_pred ccchhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccC
Q psy9620 281 EHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVA 360 (453)
Q Consensus 281 ~~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~ 360 (453)
..+|...+.+-+..+. ....|+||||.|...++.++..|...++.+..+|+.+.+.|++.+.+.|+.|. |+|||+++
T Consensus 431 ~~~K~~Aii~ei~~~~-~~GrpVLV~t~sv~~se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmA 507 (908)
T PRK13107 431 ADEKYQAIIKDIKDCR-ERGQPVLVGTVSIEQSELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMA 507 (908)
T ss_pred HHHHHHHHHHHHHHHH-HcCCCEEEEeCcHHHHHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCc
Confidence 3455555555555543 34779999999999999999999999999999999999999999999999998 99999999
Q ss_pred ccCCCCCC--------------------------------C-----cEEEEcCCCCChhHHHHhhhcccCCCCcceEEEE
Q psy9620 361 ARGLDVDD--------------------------------V-----KFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTF 403 (453)
Q Consensus 361 ~~GiDip~--------------------------------v-----~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~ 403 (453)
+||+||.= | -|||-...+.|..-=.|-.||+||.|.+|.+..|
T Consensus 508 GRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~ 587 (908)
T PRK13107 508 GRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFY 587 (908)
T ss_pred CCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEE
Confidence 99999961 1 2788888888888889999999999999999999
Q ss_pred EcCCCh
Q psy9620 404 FTQQNS 409 (453)
Q Consensus 404 ~~~~~~ 409 (453)
++-+|.
T Consensus 588 lSlED~ 593 (908)
T PRK13107 588 LSMEDS 593 (908)
T ss_pred EEeCcH
Confidence 987663
|
|
| >COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.2e-21 Score=202.26 Aligned_cols=268 Identities=19% Similarity=0.233 Sum_probs=187.0
Q ss_pred HHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHH
Q psy9620 126 KEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEV 205 (453)
Q Consensus 126 ~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~ 205 (453)
......+| .+.++|++++.++..+.+++++||||+|||++...++...+.. +.++++++|.++|.+|.+..
T Consensus 111 ~~~~~~~F-~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~--------~qrviYTsPIKALsNQKyrd 181 (1041)
T COG4581 111 PPAREYPF-ELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRD--------GQRVIYTSPIKALSNQKYRD 181 (1041)
T ss_pred cHHHhCCC-CcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHc--------CCceEeccchhhhhhhHHHH
Confidence 33445677 8999999999999999999999999999999998888777654 44499999999999999988
Q ss_pred HHHhcCCCCceEEEEeCCccCCCC-----------------------------------------------------CCc
Q psy9620 206 ARDFGSSTYLRSTCVYGGASKGPQ-----------------------------------------------------PDR 232 (453)
Q Consensus 206 ~~~~~~~~~~~~~~~~gg~~~~~~-----------------------------------------------------~~~ 232 (453)
+........-.+..++|+.+.... ...
T Consensus 182 l~~~fgdv~~~vGL~TGDv~IN~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~lP~~v 261 (1041)
T COG4581 182 LLAKFGDVADMVGLMTGDVSINPDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVWEEVIILLPDHV 261 (1041)
T ss_pred HHHHhhhhhhhccceecceeeCCCCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccccccchhHHHHHHhcCCCC
Confidence 877654322223445555444433 446
Q ss_pred eEEEEeccCcHHHHHHHHHhh---ccceEEEecccccccCccceeEEE-------Eccccch------------------
Q psy9620 233 QVLMWSATWPREVQKLAEDFL---DSYIQINIGSLTLSANHNIQQVVE-------VCAEHEK------------------ 284 (453)
Q Consensus 233 q~v~~SAT~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~i~~~~~-------~~~~~~k------------------ 284 (453)
++|++|||+|. ..++..|+. ..+..+...... +..+.+++. .+.+..+
T Consensus 262 ~~v~LSATv~N-~~EF~~Wi~~~~~~~~~vv~t~~R---pvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~~~~~ 337 (1041)
T COG4581 262 RFVFLSATVPN-AEEFAEWIQRVHSQPIHVVSTEHR---PVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLSCFSE 337 (1041)
T ss_pred cEEEEeCCCCC-HHHHHHHHHhccCCCeEEEeecCC---CCCeEEEEecCCceeeeecccccchhhcchhhhhhhhccch
Confidence 99999999965 445666654 223333222111 111111111 1110000
Q ss_pred --------------------------hhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhc---------------
Q psy9620 285 --------------------------ENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNY--------------- 323 (453)
Q Consensus 285 --------------------------~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~--------------- 323 (453)
......+++.+.....-++|+|+-+++.|+..+..+...
T Consensus 338 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~~i 417 (1041)
T COG4581 338 KVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIREI 417 (1041)
T ss_pred hccccCccccccccccccccCCcccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhcccccccCCcHHHHHHHH
Confidence 001122333333334558999999999999888887621
Q ss_pred -------------CC-------------eEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEE----
Q psy9620 324 -------------GW-------------AAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVI---- 373 (453)
Q Consensus 324 -------------~~-------------~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI---- 373 (453)
++ .+.++|++|-+..|..+.+.|..|-++||+||.+++.|+|.|.-++|+
T Consensus 418 i~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPartvv~~~l~ 497 (1041)
T COG4581 418 IDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPARTVVFTSLS 497 (1041)
T ss_pred HHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCcccceeeeeeE
Confidence 11 145799999999999999999999999999999999999999888776
Q ss_pred EcC----CCCChhHHHHhhhcccCCCCc--ceEEEEEcC
Q psy9620 374 NFD----YPNNSEDYIHRIGRTGRSDNT--GTSYTFFTQ 406 (453)
Q Consensus 374 ~~d----~p~s~~~y~qr~GRagR~g~~--g~~~~~~~~ 406 (453)
.+| -+-+..+|+|+.|||||.|.+ |.++++-.+
T Consensus 498 K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~ 536 (1041)
T COG4581 498 KFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPP 536 (1041)
T ss_pred EecCCceeecChhHHHHhhhhhccccccccceEEEecCC
Confidence 233 234689999999999999865 777776443
|
|
| >COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.1e-21 Score=200.75 Aligned_cols=269 Identities=18% Similarity=0.234 Sum_probs=186.3
Q ss_pred CCHHHHHHHHHHhc---CC-cEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhcC
Q psy9620 136 PTPIQAQGWPIAMS---GS-NMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGS 211 (453)
Q Consensus 136 ~~~~Q~~~i~~i~~---g~-d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~~ 211 (453)
..+.|..++..++. .. .+++.||||+|||++.+++++..+... ....++++++.|++.+.+++++.++....
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~----~~~~~r~i~vlP~~t~ie~~~~r~~~~~~ 271 (733)
T COG1203 196 GYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEK----IKLKSRVIYVLPFRTIIEDMYRRAKEIFG 271 (733)
T ss_pred hhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhcc----ccccceEEEEccHHHHHHHHHHHHHhhhc
Confidence 48899999988774 34 788999999999999999988766552 11477899999999999999999997643
Q ss_pred CCCceEEEEeCCccC------CC---C-----------------------------------------------------
Q psy9620 212 STYLRSTCVYGGASK------GP---Q----------------------------------------------------- 229 (453)
Q Consensus 212 ~~~~~~~~~~gg~~~------~~---~----------------------------------------------------- 229 (453)
...+.....++.... .. .
T Consensus 272 ~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~ 351 (733)
T COG1203 272 LFSVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYA 351 (733)
T ss_pred ccccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhhc
Confidence 322222111111000 00 0
Q ss_pred -----------------CCceEEEEeccCcHHHHHHHHHhhccceEEEecccccccCccceeEEEEccccchh--hhHHH
Q psy9620 230 -----------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKE--NKLFG 290 (453)
Q Consensus 230 -----------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~--~~l~~ 290 (453)
.+..+|+||||+|+...+.+...+.+...+.......................... ..+..
T Consensus 352 ~~~~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 431 (733)
T COG1203 352 DETMLAALLALLEALAEAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERVDVEDGPQEELIE 431 (733)
T ss_pred ccchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccchhhhhhhhHhhhh
Confidence 57889999999999999888887765443332211000001111010000000011 01111
Q ss_pred HHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHh----cCCCcEEEEeccCccCCCC
Q psy9620 291 LLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFR----NGRAGILVATDVAARGLDV 366 (453)
Q Consensus 291 ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~----~g~~~vLvaT~~~~~GiDi 366 (453)
.+... .....+++|.|||...|..++..|+..+..+..+|+.+...+|.+.++.++ .+...|+|||++++.|+|+
T Consensus 432 ~~~~~-~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDi 510 (733)
T COG1203 432 LISEE-VKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDI 510 (733)
T ss_pred cchhh-hccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEecc
Confidence 11111 134679999999999999999999998778999999999999998888655 5788999999999999999
Q ss_pred CCCcEEEEcCCCCChhHHHHhhhcccCCC--CcceEEEEEcCCChHHH
Q psy9620 367 DDVKFVINFDYPNNSEDYIHRIGRTGRSD--NTGTSYTFFTQQNSRQA 412 (453)
Q Consensus 367 p~v~~VI~~d~p~s~~~y~qr~GRagR~g--~~g~~~~~~~~~~~~~~ 412 (453)
+++++|-==.| +...+||+||+.|.| ..|..+++.........
T Consensus 511 -dfd~mITe~aP--idSLIQR~GRv~R~g~~~~~~~~v~~~~~~~~~~ 555 (733)
T COG1203 511 -DFDVLITELAP--IDSLIQRAGRVNRHGKKENGKIYVYNDEERGPYL 555 (733)
T ss_pred -ccCeeeecCCC--HHHHHHHHHHHhhcccccCCceeEeecccCCCch
Confidence 58877765445 999999999999998 56888887776544333
|
|
| >PRK12899 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.5e-21 Score=195.00 Aligned_cols=104 Identities=18% Similarity=0.159 Sum_probs=91.4
Q ss_pred cccCCCHHHHHHHH-----HCCCCCC---CHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCc
Q psy9620 116 AEANFPDYVLKEVK-----RQGFDRP---TPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGP 187 (453)
Q Consensus 116 ~~~~l~~~l~~~l~-----~~g~~~~---~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~ 187 (453)
+.+.+...+.+.+. ..||..| +|+|.++++.+..++++++.++||+|||++|++|++..+... .
T Consensus 65 eafal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~g--------~ 136 (970)
T PRK12899 65 EAYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALTG--------K 136 (970)
T ss_pred HHhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhhc--------C
Confidence 55678888888776 5789988 999999999999999999999999999999999999877532 1
Q ss_pred EEEEEcCCHHHHHHHHHHHHHhcCCCCceEEEEeCCccCC
Q psy9620 188 IVLVLAPTRELAQQIQEVARDFGSSTYLRSTCVYGGASKG 227 (453)
Q Consensus 188 ~vlil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~ 227 (453)
.++||+||++||.|+++++..+....++++.+++||.+..
T Consensus 137 ~v~IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~ 176 (970)
T PRK12899 137 PVHLVTVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLE 176 (970)
T ss_pred CeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHH
Confidence 3899999999999999999999998999999999886543
|
|
| >PRK12900 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.88 E-value=3e-21 Score=199.14 Aligned_cols=127 Identities=17% Similarity=0.303 Sum_probs=112.0
Q ss_pred cccchhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecc
Q psy9620 280 AEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDV 359 (453)
Q Consensus 280 ~~~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~ 359 (453)
...+|...+...+.... ....++||||+|+..++.|+..|...++++..+|+ .+.+|+..+..|+.+...|+|||++
T Consensus 579 t~~eK~~Ali~~I~~~~-~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNM 655 (1025)
T PRK12900 579 TRREKYNAIVLKVEELQ-KKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNM 655 (1025)
T ss_pred CHHHHHHHHHHHHHHHh-hCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccC
Confidence 33456666666665543 34679999999999999999999999999999997 6889999999999999999999999
Q ss_pred CccCCCCC---CCc-----EEEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcCCCh
Q psy9620 360 AARGLDVD---DVK-----FVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNS 409 (453)
Q Consensus 360 ~~~GiDip---~v~-----~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~ 409 (453)
++||+||+ .|. +||+++.|.|...|.|++|||||.|.+|.++.|++.+|.
T Consensus 656 AGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~ 713 (1025)
T PRK12900 656 AGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLEDE 713 (1025)
T ss_pred cCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhHH
Confidence 99999999 554 459999999999999999999999999999999998763
|
|
| >PRK05298 excinuclease ABC subunit B; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.7e-20 Score=191.40 Aligned_cols=131 Identities=20% Similarity=0.362 Sum_probs=117.0
Q ss_pred CCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEEEcCC-
Q psy9620 299 DENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVINFDY- 377 (453)
Q Consensus 299 ~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~- 377 (453)
...++||||+++..++.|++.|...++.+..+|+++++.+|..+++.|+.|.+.|||||+++++|+|+|++++||++|.
T Consensus 445 ~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGfdlp~v~lVii~d~e 524 (652)
T PRK05298 445 KGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDAD 524 (652)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCCccccCCcEEEEeCCc
Confidence 4568999999999999999999999999999999999999999999999999999999999999999999999999884
Q ss_pred ----CCChhHHHHhhhcccCCCCcceEEEEEcCC---------ChHHHHHHHHHHHhcCCCCChHH
Q psy9620 378 ----PNNSEDYIHRIGRTGRSDNTGTSYTFFTQQ---------NSRQAKDLIDVLTESNHPVDPKL 430 (453)
Q Consensus 378 ----p~s~~~y~qr~GRagR~g~~g~~~~~~~~~---------~~~~~~~l~~~l~~~~~~v~~~l 430 (453)
|.+..+|+||+||+||. ..|.|++|++.. +....+++...++.....+|..+
T Consensus 525 ifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 589 (652)
T PRK05298 525 KEGFLRSERSLIQTIGRAARN-VNGKVILYADKITDSMQKAIDETERRREIQIAYNEEHGITPKTI 589 (652)
T ss_pred ccccCCCHHHHHHHhccccCC-CCCEEEEEecCCCHHHHHHHHHHHHHHHHHHHhhhccCCCChhH
Confidence 78999999999999997 789999999853 44555666666777777777655
|
|
| >PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.4e-20 Score=201.55 Aligned_cols=96 Identities=26% Similarity=0.401 Sum_probs=83.8
Q ss_pred CCCcEEEEEcchhHHHHHHHHHHhc------C---CeEEEEcCCCCHHHHHHHHHHHhcCCC-cEEEEeccCccCCCCCC
Q psy9620 299 DENKTIIFAETKRKVDKITKSIQNY------G---WAAVGIHGDKSQQERDYVLKEFRNGRA-GILVATDVAARGLDVDD 368 (453)
Q Consensus 299 ~~~~~lVF~~s~~~~~~l~~~L~~~------~---~~~~~~h~~~~~~~r~~~~~~f~~g~~-~vLvaT~~~~~GiDip~ 368 (453)
..+++||||.++.+|+.+++.|.+. + ..+..+|++++ ++..++++|+++.. +|||+++++.+|+|+|.
T Consensus 697 ~~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~ 774 (1123)
T PRK11448 697 GEGKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPS 774 (1123)
T ss_pred CCCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCccc
Confidence 3479999999999999999987753 1 24567899875 56789999999887 69999999999999999
Q ss_pred CcEEEEcCCCCChhHHHHhhhcccCCCC
Q psy9620 369 VKFVINFDYPNNSEDYIHRIGRTGRSDN 396 (453)
Q Consensus 369 v~~VI~~d~p~s~~~y~qr~GRagR~g~ 396 (453)
|.+||++..+.|...|+||+||+.|.-.
T Consensus 775 v~~vVf~rpvkS~~lf~QmIGRgtR~~~ 802 (1123)
T PRK11448 775 ICNLVFLRRVRSRILYEQMLGRATRLCP 802 (1123)
T ss_pred ccEEEEecCCCCHHHHHHHHhhhccCCc
Confidence 9999999999999999999999999743
|
|
| >COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.4e-20 Score=190.65 Aligned_cols=257 Identities=18% Similarity=0.254 Sum_probs=179.7
Q ss_pred CHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHH-hcCCCCc
Q psy9620 137 TPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARD-FGSSTYL 215 (453)
Q Consensus 137 ~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~-~~~~~~~ 215 (453)
+....+.+.++.+.+-++|+++||||||...-.-+++.-. ..+..+.++-|.|--|..+++.+.+ ++...+-
T Consensus 52 ~~~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~-------~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~ 124 (845)
T COG1643 52 TAVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGL-------GIAGKIGCTQPRRLAARSVAERVAEELGEKLGE 124 (845)
T ss_pred HHHHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhc-------ccCCeEEecCchHHHHHHHHHHHHHHhCCCcCc
Confidence 3345566667778889999999999999653333333222 2345688889999888887766554 3333332
Q ss_pred eEEE----------------EeCCccCC-----CC----------------------------------CCceEEEEecc
Q psy9620 216 RSTC----------------VYGGASKG-----PQ----------------------------------PDRQVLMWSAT 240 (453)
Q Consensus 216 ~~~~----------------~~gg~~~~-----~~----------------------------------~~~q~v~~SAT 240 (453)
.|.. ++.|.-.. .. ++.++|.||||
T Consensus 125 ~VGY~iRfe~~~s~~Trik~mTdGiLlrei~~D~~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKiIimSAT 204 (845)
T COG1643 125 TVGYSIRFESKVSPRTRIKVMTDGILLREIQNDPLLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKLIIMSAT 204 (845)
T ss_pred eeeEEEEeeccCCCCceeEEeccHHHHHHHhhCcccccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCceEEEEecc
Confidence 2221 11111000 00 47899999999
Q ss_pred CcHHHHHHHHHhhccceEEEecccccccCccceeEE-EEccccc-hhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHH
Q psy9620 241 WPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVV-EVCAEHE-KENKLFGLLNDISSKDENKTIIFAETKRKVDKITK 318 (453)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~-k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~ 318 (453)
+..+ .+..++.+...+.+.....+ ++-.+ ....... -...+...+........+.+|||.+...+++.+++
T Consensus 205 ld~~---rfs~~f~~apvi~i~GR~fP----Vei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~EI~~~~~ 277 (845)
T COG1643 205 LDAE---RFSAYFGNAPVIEIEGRTYP----VEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQREIERTAE 277 (845)
T ss_pred cCHH---HHHHHcCCCCEEEecCCccc----eEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECCcHHHHHHHHH
Confidence 8663 34455665544554443322 22122 1111122 34555566666666678899999999999999999
Q ss_pred HHHh----cCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEEEcCC-----------------
Q psy9620 319 SIQN----YGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVINFDY----------------- 377 (453)
Q Consensus 319 ~L~~----~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~----------------- 377 (453)
.|.+ ....+..+|+.++.+++..+++--..++.+|++||++++.+|.||+|.+||.-+.
T Consensus 278 ~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~ 357 (845)
T COG1643 278 WLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLET 357 (845)
T ss_pred HHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCcccccccccccCceeeeE
Confidence 9998 3578999999999999999999888888889999999999999999999996433
Q ss_pred -CCChhHHHHhhhcccCCCCcceEEEEEcCCC
Q psy9620 378 -PNNSEDYIHRIGRTGRSDNTGTSYTFFTQQN 408 (453)
Q Consensus 378 -p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~ 408 (453)
|-|.++..||.|||||. .+|.||-+|++++
T Consensus 358 ~~ISqAsA~QRaGRAGR~-~pGicyRLyse~~ 388 (845)
T COG1643 358 EPISKASADQRAGRAGRT-GPGICYRLYSEED 388 (845)
T ss_pred EEechhhhhhhccccccC-CCceEEEecCHHH
Confidence 45778899999999999 6899999999754
|
|
| >cd00268 DEADc DEAD-box helicases | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.8e-20 Score=165.10 Aligned_cols=142 Identities=46% Similarity=0.769 Sum_probs=123.9
Q ss_pred ccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcC
Q psy9620 115 FAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAP 194 (453)
Q Consensus 115 f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P 194 (453)
|+++++++.+.+.+.+.|+..|+++|.++++.+++++|+++++|||+|||++|++|++..+.... ...++++||++|
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~---~~~~~~viii~p 77 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSP---KKDGPQALILAP 77 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhc---ccCCceEEEEcC
Confidence 67889999999999999999999999999999999999999999999999999999999887652 125788999999
Q ss_pred CHHHHHHHHHHHHHhcCCCCceEEEEeCCccCCC---------C------------------------------------
Q psy9620 195 TRELAQQIQEVARDFGSSTYLRSTCVYGGASKGP---------Q------------------------------------ 229 (453)
Q Consensus 195 tr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~---------~------------------------------------ 229 (453)
|++|+.|+.+.+..+....++.+.+++|+..... .
T Consensus 78 ~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~~ 157 (203)
T cd00268 78 TRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLD 157 (203)
T ss_pred CHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhhc
Confidence 9999999999999998777788888777655311 0
Q ss_pred ---------------CCceEEEEeccCcHHHHHHHHHhhccceEE
Q psy9620 230 ---------------PDRQVLMWSATWPREVQKLAEDFLDSYIQI 259 (453)
Q Consensus 230 ---------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~ 259 (453)
..+|++++|||+++.+..++..++.+++.+
T Consensus 158 ~~~~~~~~~~~~~l~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~ 202 (203)
T cd00268 158 MGFEDQIREILKLLPKDRQTLLFSATMPKEVRDLARKFLRNPVRI 202 (203)
T ss_pred cChHHHHHHHHHhCCcccEEEEEeccCCHHHHHHHHHHCCCCEEe
Confidence 468999999999999999999998887754
|
A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region. |
| >COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.9e-19 Score=179.89 Aligned_cols=269 Identities=20% Similarity=0.259 Sum_probs=184.0
Q ss_pred CCCCHHHHHHHHHHhcC----CcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHh
Q psy9620 134 DRPTPIQAQGWPIAMSG----SNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDF 209 (453)
Q Consensus 134 ~~~~~~Q~~~i~~i~~g----~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~ 209 (453)
..+++.|+.++..+.+. +..++.+.||||||.+|+-.+-..+. .|..||||+|-.+|..|+.+.++..
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~--------~GkqvLvLVPEI~Ltpq~~~rf~~r 268 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLA--------QGKQVLVLVPEIALTPQLLARFKAR 268 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHH--------cCCEEEEEeccccchHHHHHHHHHH
Confidence 36889999999998765 67899999999999999776666554 3667999999999999999999887
Q ss_pred cCCCCceEEEEeCCccCCCC------------------------------------------------------------
Q psy9620 210 GSSTYLRSTCVYGGASKGPQ------------------------------------------------------------ 229 (453)
Q Consensus 210 ~~~~~~~~~~~~gg~~~~~~------------------------------------------------------------ 229 (453)
+. .++.+++.+.+....
T Consensus 269 Fg---~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF~Pf~~LGLIIvDEEHD~sYKq~~~prYhARdvA~~Ra 345 (730)
T COG1198 269 FG---AKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSALFLPFKNLGLIIVDEEHDSSYKQEDGPRYHARDVAVLRA 345 (730)
T ss_pred hC---CChhhhcccCChHHHHHHHHHHhcCCceEEEEechhhcCchhhccEEEEeccccccccCCcCCCcCHHHHHHHHH
Confidence 43 455555554443322
Q ss_pred --CCceEEEEeccCcHHHHHHHHHhhccceEEEecccccccCccceeEEEEccccchh-----hhHHHHHHhhhcCCCCc
Q psy9620 230 --PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKE-----NKLFGLLNDISSKDENK 302 (453)
Q Consensus 230 --~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~-----~~l~~ll~~~~~~~~~~ 302 (453)
.++++|+-|||.. ++.+....-..+..+............-.+.+.+..+..+. ..|++.+.... ..+.+
T Consensus 346 ~~~~~pvvLgSATPS--LES~~~~~~g~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i~~~l-~~geQ 422 (730)
T COG1198 346 KKENAPVVLGSATPS--LESYANAESGKYKLLRLTNRAGRARLPRVEIIDMRKEPLETGRSLSPALLEAIRKTL-ERGEQ 422 (730)
T ss_pred HHhCCCEEEecCCCC--HHHHHhhhcCceEEEEccccccccCCCcceEEeccccccccCccCCHHHHHHHHHHH-hcCCe
Confidence 6789999999954 44443332222333333322211112222333333322222 33444444332 23668
Q ss_pred EEEEEcchhH------------------------------------------------------------HHHHHHHHHh
Q psy9620 303 TIIFAETKRK------------------------------------------------------------VDKITKSIQN 322 (453)
Q Consensus 303 ~lVF~~s~~~------------------------------------------------------------~~~l~~~L~~ 322 (453)
+|+|+|.+-. ++++.+.|..
T Consensus 423 ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~GterieeeL~~ 502 (730)
T COG1198 423 VLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERIEEELKR 502 (730)
T ss_pred EEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccHHHHHHHHHH
Confidence 9999987643 4677777766
Q ss_pred c--CCeEEEEcCCCCHHH--HHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEEEcCCC--C----------ChhHHHH
Q psy9620 323 Y--GWAAVGIHGDKSQQE--RDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVINFDYP--N----------NSEDYIH 386 (453)
Q Consensus 323 ~--~~~~~~~h~~~~~~~--r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p--~----------s~~~y~q 386 (453)
. +..+..+.+|..... -+..++.|.+|+.+|||.|++++.|.|+|++++|...|.. . ...-+.|
T Consensus 503 ~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~fqll~Q 582 (730)
T COG1198 503 LFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERTFQLLMQ 582 (730)
T ss_pred HCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcCCCcchHHHHHHHHHH
Confidence 4 667888888766544 4678999999999999999999999999999986654432 1 1234589
Q ss_pred hhhcccCCCCcceEEEEEcCCChHHHHHHH
Q psy9620 387 RIGRTGRSDNTGTSYTFFTQQNSRQAKDLI 416 (453)
Q Consensus 387 r~GRagR~g~~g~~~~~~~~~~~~~~~~l~ 416 (453)
-+|||||.+.+|.+++-....+...++.++
T Consensus 583 vaGRAgR~~~~G~VvIQT~~P~hp~i~~~~ 612 (730)
T COG1198 583 VAGRAGRAGKPGEVVIQTYNPDHPAIQALK 612 (730)
T ss_pred HHhhhccCCCCCeEEEEeCCCCcHHHHHHH
Confidence 999999999999999888777655554444
|
|
| >KOG0920|consensus | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.5e-19 Score=185.02 Aligned_cols=265 Identities=20% Similarity=0.269 Sum_probs=187.8
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHH-hcCCC
Q psy9620 135 RPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARD-FGSST 213 (453)
Q Consensus 135 ~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~-~~~~~ 213 (453)
..+..+.+.+.++.+.+.++|++.||||||.-.---+|+...... ...++++..|.|--|..+++++.. .+...
T Consensus 173 Pa~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~-----~~~~IicTQPRRIsAIsvAeRVa~ER~~~~ 247 (924)
T KOG0920|consen 173 PAYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESG-----AACNIICTQPRRISAISVAERVAKERGESL 247 (924)
T ss_pred ccHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcC-----CCCeEEecCCchHHHHHHHHHHHHHhcccc
Confidence 356778888899999999999999999999875555566554433 456689999999999998887654 33222
Q ss_pred CceEEEEeCCccCCCC------------------------------------------------------CCceEEEEec
Q psy9620 214 YLRSTCVYGGASKGPQ------------------------------------------------------PDRQVLMWSA 239 (453)
Q Consensus 214 ~~~~~~~~gg~~~~~~------------------------------------------------------~~~q~v~~SA 239 (453)
+-.+..-....+.... ++.++|+|||
T Consensus 248 g~~VGYqvrl~~~~s~~t~L~fcTtGvLLr~L~~~~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p~LkvILMSA 327 (924)
T KOG0920|consen 248 GEEVGYQVRLESKRSRETRLLFCTTGVLLRRLQSDPTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNPDLKVILMSA 327 (924)
T ss_pred CCeeeEEEeeecccCCceeEEEecHHHHHHHhccCcccccCceeeeeeEEEccCCcccHHHHHHHHhhhCCCceEEEeee
Confidence 2111111111100000 8899999999
Q ss_pred cCcHHHHHHHHHhhccceEEEecccccccCc---------------cceeE------------EEEccccchhhhHHHHH
Q psy9620 240 TWPREVQKLAEDFLDSYIQINIGSLTLSANH---------------NIQQV------------VEVCAEHEKENKLFGLL 292 (453)
Q Consensus 240 T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~i~~~------------~~~~~~~~k~~~l~~ll 292 (453)
|+.. +....|+.....+.+......+.. ...+. +.......+.+.+..++
T Consensus 328 T~da---e~fs~YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~Li~~li 404 (924)
T KOG0920|consen 328 TLDA---ELFSDYFGGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPEIDYDLIEDLI 404 (924)
T ss_pred ecch---HHHHHHhCCCceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhccccccHHHHHHHH
Confidence 9873 455666666555554433221110 00000 11111223445566677
Q ss_pred HhhhcCC-CCcEEEEEcchhHHHHHHHHHHhc-------CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCC
Q psy9620 293 NDISSKD-ENKTIIFAETKRKVDKITKSIQNY-------GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGL 364 (453)
Q Consensus 293 ~~~~~~~-~~~~lVF~~s~~~~~~l~~~L~~~-------~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gi 364 (453)
..+...+ .+.+|||.+...++..+.+.|... .+.+..+|+.|+..++..+++....|..+||+||++++..|
T Consensus 405 ~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaTNIAETSI 484 (924)
T KOG0920|consen 405 EYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILATNIAETSI 484 (924)
T ss_pred HhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCCCcchhhhhhhhHhhcc
Confidence 7665543 679999999999999999999742 35678899999999999999999999999999999999999
Q ss_pred CCCCCcEEEE--------cCCCC----------ChhHHHHhhhcccCCCCcceEEEEEcCCC
Q psy9620 365 DVDDVKFVIN--------FDYPN----------NSEDYIHRIGRTGRSDNTGTSYTFFTQQN 408 (453)
Q Consensus 365 Dip~v~~VI~--------~d~p~----------s~~~y~qr~GRagR~g~~g~~~~~~~~~~ 408 (453)
.|+||.+||. ||+-. |.+.-.||.|||||. .+|.||.+|+...
T Consensus 485 TIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv-~~G~cy~L~~~~~ 545 (924)
T KOG0920|consen 485 TIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV-RPGICYHLYTRSR 545 (924)
T ss_pred cccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCc-cCCeeEEeechhh
Confidence 9999999996 55443 344558999999999 8999999999754
|
|
| >KOG0922|consensus | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.5e-18 Score=167.92 Aligned_cols=258 Identities=15% Similarity=0.276 Sum_probs=175.0
Q ss_pred HHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHH-hcCCCCce
Q psy9620 138 PIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARD-FGSSTYLR 216 (453)
Q Consensus 138 ~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~-~~~~~~~~ 216 (453)
..-.+.+..+.+++-+|++++||||||. ++|-+ +....-. ....+.+.-|.|--|..+++.+.. .+...+-.
T Consensus 54 ~~r~~il~~ve~nqvlIviGeTGsGKST--QipQy--L~eaG~~---~~g~I~~TQPRRVAavslA~RVAeE~~~~lG~~ 126 (674)
T KOG0922|consen 54 KYRDQILYAVEDNQVLIVIGETGSGKST--QIPQY--LAEAGFA---SSGKIACTQPRRVAAVSLAKRVAEEMGCQLGEE 126 (674)
T ss_pred HHHHHHHHHHHHCCEEEEEcCCCCCccc--cHhHH--HHhcccc---cCCcEEeecCchHHHHHHHHHHHHHhCCCcCce
Confidence 3445667777788899999999999996 45544 3222111 122378889999988888765543 33333322
Q ss_pred EEE--EeCCccCCCC----------------------------------------------------CCceEEEEeccCc
Q psy9620 217 STC--VYGGASKGPQ----------------------------------------------------PDRQVLMWSATWP 242 (453)
Q Consensus 217 ~~~--~~gg~~~~~~----------------------------------------------------~~~q~v~~SAT~~ 242 (453)
|.. .+.+.....- ++.++|++|||+.
T Consensus 127 VGY~IRFed~ts~~TrikymTDG~LLRE~l~Dp~LskYsvIIlDEAHERsl~TDiLlGlLKki~~~R~~LklIimSATld 206 (674)
T KOG0922|consen 127 VGYTIRFEDSTSKDTRIKYMTDGMLLREILKDPLLSKYSVIILDEAHERSLHTDILLGLLKKILKKRPDLKLIIMSATLD 206 (674)
T ss_pred eeeEEEecccCCCceeEEEecchHHHHHHhcCCccccccEEEEechhhhhhHHHHHHHHHHHHHhcCCCceEEEEeeeec
Confidence 221 1111111000 6789999999986
Q ss_pred HHHHHHHHHhhccceEEEecccccccCccceeEEEEccccchh-hhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHH
Q psy9620 243 REVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKE-NKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQ 321 (453)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~-~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~ 321 (453)
. +....|+.+...+.+..... .++..+...+..+-. +.+.-+++.....+.+-+|||....++++.+++.|.
T Consensus 207 a---~kfS~yF~~a~i~~i~GR~f----PVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeEIe~~~~~l~ 279 (674)
T KOG0922|consen 207 A---EKFSEYFNNAPILTIPGRTF----PVEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQEEIEAACELLR 279 (674)
T ss_pred H---HHHHHHhcCCceEeecCCCC----ceeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHH
Confidence 5 34456666644444443322 222222222222222 222333333334566789999999999999999998
Q ss_pred hc------C--CeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEEEcCC----------------
Q psy9620 322 NY------G--WAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVINFDY---------------- 377 (453)
Q Consensus 322 ~~------~--~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~---------------- 377 (453)
+. + .-+..+|+.|+.+++..+++.-..|..+|++||++++..|.|+.|.+||.-++
T Consensus 280 e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~~~L~ 359 (674)
T KOG0922|consen 280 ERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTGLDSLI 359 (674)
T ss_pred HHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeeccccCcccee
Confidence 64 1 13567999999999999999999999999999999999999999999996332
Q ss_pred --CCChhHHHHhhhcccCCCCcceEEEEEcCCChH
Q psy9620 378 --PNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSR 410 (453)
Q Consensus 378 --p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~ 410 (453)
|-|.++-.||+|||||. .+|+||-++++++..
T Consensus 360 v~~ISkasA~QRaGRAGRt-~pGkcyRLYte~~~~ 393 (674)
T KOG0922|consen 360 VVPISKASANQRAGRAGRT-GPGKCYRLYTESAYD 393 (674)
T ss_pred EEechHHHHhhhcccCCCC-CCceEEEeeeHHHHh
Confidence 45788889999999999 589999999987643
|
|
| >COG1110 Reverse gyrase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.7e-18 Score=172.30 Aligned_cols=226 Identities=25% Similarity=0.373 Sum_probs=160.4
Q ss_pred HHHHC-CCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHH
Q psy9620 127 EVKRQ-GFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEV 205 (453)
Q Consensus 127 ~l~~~-g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~ 205 (453)
.+++. || .|+..|.-....+..|++.-++||||.|||.--++..+. +.. .+.++++|+||..|+.|+.+.
T Consensus 74 fF~k~~G~-~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~-~a~-------kgkr~yii~PT~~Lv~Q~~~k 144 (1187)
T COG1110 74 FFKKATGF-RPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLY-LAK-------KGKRVYIIVPTTTLVRQVYER 144 (1187)
T ss_pred HHHHhhCC-CchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHH-HHh-------cCCeEEEEecCHHHHHHHHHH
Confidence 34444 55 999999999999999999999999999999543333332 211 467899999999999999999
Q ss_pred HHHhcCCCC-ceEEE-EeCCccCCCC------------------------------------------------------
Q psy9620 206 ARDFGSSTY-LRSTC-VYGGASKGPQ------------------------------------------------------ 229 (453)
Q Consensus 206 ~~~~~~~~~-~~~~~-~~gg~~~~~~------------------------------------------------------ 229 (453)
+.+++...+ .++.. .++..+....
T Consensus 145 l~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L~~~kFdfifVDDVDA~LkaskNvDr 224 (1187)
T COG1110 145 LKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEELSKLKFDFIFVDDVDAILKASKNVDR 224 (1187)
T ss_pred HHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHhcccCCCEEEEccHHHHHhccccHHH
Confidence 999986555 44443 3333222211
Q ss_pred --------------------------------------------------CCceEEEEeccCcHHH--HHHHHHhhccce
Q psy9620 230 --------------------------------------------------PDRQVLMWSATWPREV--QKLAEDFLDSYI 257 (453)
Q Consensus 230 --------------------------------------------------~~~q~v~~SAT~~~~~--~~~~~~~~~~~~ 257 (453)
...++++.|||..+.- ..+.+.++.
T Consensus 225 iL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLlg--- 301 (1187)
T COG1110 225 LLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELLG--- 301 (1187)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHhC---
Confidence 3467888888875322 233333332
Q ss_pred EEEecccccccCccceeEEEEccccchhhhHHHHHHhhhcCCCCcEEEEEcc---hhHHHHHHHHHHhcCCeEEEEcCCC
Q psy9620 258 QINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAET---KRKVDKITKSIQNYGWAAVGIHGDK 334 (453)
Q Consensus 258 ~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~lVF~~s---~~~~~~l~~~L~~~~~~~~~~h~~~ 334 (453)
..++... ....+|...+. ..+...+++++++.+ ..-.|||++. ++.++.++++|+..|+++..+|+
T Consensus 302 -FevG~~~-~~LRNIvD~y~---~~~~~e~~~elvk~l----G~GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a-- 370 (1187)
T COG1110 302 -FEVGSGG-EGLRNIVDIYV---ESESLEKVVELVKKL----GDGGLIFVPIDYGREKAEELAEYLRSHGINAELIHA-- 370 (1187)
T ss_pred -CccCccc-hhhhheeeeec---cCccHHHHHHHHHHh----CCCeEEEEEcHHhHHHHHHHHHHHHhcCceEEEeec--
Confidence 1222211 11223332222 224556677777765 4578999999 99999999999999999999998
Q ss_pred CHHHHHHHHHHHhcCCCcEEEEec----cCccCCCCCC-CcEEEEcCCC
Q psy9620 335 SQQERDYVLKEFRNGRAGILVATD----VAARGLDVDD-VKFVINFDYP 378 (453)
Q Consensus 335 ~~~~r~~~~~~f~~g~~~vLvaT~----~~~~GiDip~-v~~VI~~d~p 378 (453)
.....++.|..|+++|||.+. ++.||||+|. +.++|.++.|
T Consensus 371 ---~~~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvP 416 (1187)
T COG1110 371 ---EKEEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred ---cchhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCC
Confidence 337789999999999999875 6889999995 6789999888
|
|
| >cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process | Back alignment and domain information |
|---|
Probab=99.80 E-value=1e-18 Score=145.19 Aligned_cols=120 Identities=41% Similarity=0.705 Sum_probs=109.4
Q ss_pred chhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCcc
Q psy9620 283 EKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAAR 362 (453)
Q Consensus 283 ~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~ 362 (453)
.+...+..++....+ ...++||||+++..++.+++.|.+....+..+|+.++..+|..+++.|.++..+||++|+++++
T Consensus 12 ~k~~~i~~~i~~~~~-~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~ 90 (131)
T cd00079 12 EKLEALLELLKEHLK-KGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIAR 90 (131)
T ss_pred HHHHHHHHHHHhccc-CCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhc
Confidence 466666666665532 4679999999999999999999998899999999999999999999999999999999999999
Q ss_pred CCCCCCCcEEEEcCCCCChhHHHHhhhcccCCCCcceEEEE
Q psy9620 363 GLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTF 403 (453)
Q Consensus 363 GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~ 403 (453)
|+|+|.+++||+++.|.+..+|+|++||++|.|+.|.++++
T Consensus 91 G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 91 GIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred CcChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 99999999999999999999999999999999988887764
|
|
| >TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.1e-18 Score=181.72 Aligned_cols=132 Identities=17% Similarity=0.259 Sum_probs=96.0
Q ss_pred hHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHh----cCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCcc
Q psy9620 287 KLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQN----YGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAAR 362 (453)
Q Consensus 287 ~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~----~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~ 362 (453)
.+...+..+.....+++|||++|....+.++..|.. .++.+ +..+.. ..|..++++|+.++..||++|+.+++
T Consensus 661 ~ia~~i~~l~~~~~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~~--l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~E 737 (850)
T TIGR01407 661 EIASYIIEITAITSPKILVLFTSYEMLHMVYDMLNELPEFEGYEV--LAQGIN-GSRAKIKKRFNNGEKAILLGTSSFWE 737 (850)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHhhhccccCceE--EecCCC-ccHHHHHHHHHhCCCeEEEEcceeec
Confidence 344555555455567999999999999999999975 23443 333333 57899999999999999999999999
Q ss_pred CCCCCCCc--EEEEcCCCCC------------------------------hhHHHHhhhcccCCCCcceEEEEEcCC--C
Q psy9620 363 GLDVDDVK--FVINFDYPNN------------------------------SEDYIHRIGRTGRSDNTGTSYTFFTQQ--N 408 (453)
Q Consensus 363 GiDip~v~--~VI~~d~p~s------------------------------~~~y~qr~GRagR~g~~g~~~~~~~~~--~ 408 (453)
|||+|+.. +||...+|.. +..+.|-+||.-|...+--+++++++. .
T Consensus 738 GVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ilD~R~~~ 817 (850)
T TIGR01407 738 GVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRENDRGSIVILDRRLVG 817 (850)
T ss_pred ccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCCceEEEEEEcccccc
Confidence 99999877 4666665521 223479999999997665566666654 4
Q ss_pred hHHHHHHHHHHHh
Q psy9620 409 SRQAKDLIDVLTE 421 (453)
Q Consensus 409 ~~~~~~l~~~l~~ 421 (453)
..+-+.+++.|..
T Consensus 818 ~~Yg~~~~~sLp~ 830 (850)
T TIGR01407 818 KRYGKRFEKSLPE 830 (850)
T ss_pred chHHHHHHHhCCC
Confidence 4566777776654
|
This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli. |
| >KOG0923|consensus | Back alignment and domain information |
|---|
Probab=99.78 E-value=9.8e-18 Score=163.43 Aligned_cols=258 Identities=19% Similarity=0.297 Sum_probs=176.0
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHH-HhcCC-
Q psy9620 135 RPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVAR-DFGSS- 212 (453)
Q Consensus 135 ~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~-~~~~~- 212 (453)
..+++-.+.+.++...+-+||.+.||||||. ++|-+. ....-.. .+.++-+..|.|--|..++..+. +++..
T Consensus 265 PVy~ykdell~av~e~QVLiI~GeTGSGKTT--QiPQyL--~EaGytk--~gk~IgcTQPRRVAAmSVAaRVA~EMgvkL 338 (902)
T KOG0923|consen 265 PVYPYKDELLKAVKEHQVLIIVGETGSGKTT--QIPQYL--YEAGYTK--GGKKIGCTQPRRVAAMSVAARVAEEMGVKL 338 (902)
T ss_pred CchhhHHHHHHHHHhCcEEEEEcCCCCCccc--cccHHH--Hhccccc--CCceEeecCcchHHHHHHHHHHHHHhCccc
Confidence 4567778888888899999999999999995 466543 3322211 24457788899999888866544 33322
Q ss_pred ---CCceEEE--E----------eCCccCC-----C---------------------------------CCCceEEEEec
Q psy9620 213 ---TYLRSTC--V----------YGGASKG-----P---------------------------------QPDRQVLMWSA 239 (453)
Q Consensus 213 ---~~~~~~~--~----------~gg~~~~-----~---------------------------------~~~~q~v~~SA 239 (453)
.+..+.. + ..|+-.. + .++.++++.||
T Consensus 339 G~eVGYsIRFEdcTSekTvlKYMTDGmLlREfL~epdLasYSViiiDEAHERTL~TDILfgLvKDIar~RpdLKllIsSA 418 (902)
T KOG0923|consen 339 GHEVGYSIRFEDCTSEKTVLKYMTDGMLLREFLSEPDLASYSVIIVDEAHERTLHTDILFGLVKDIARFRPDLKLLISSA 418 (902)
T ss_pred ccccceEEEeccccCcceeeeeecchhHHHHHhccccccceeEEEeehhhhhhhhhhHHHHHHHHHHhhCCcceEEeecc
Confidence 2222210 0 0110000 0 08899999999
Q ss_pred cCcHHHHHHHHHhhccceEEEecccccccCccceeEEEEccccchhhh-HHHHHHhhhcCCCCcEEEEEcchhHHHHHHH
Q psy9620 240 TWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENK-LFGLLNDISSKDENKTIIFAETKRKVDKITK 318 (453)
Q Consensus 240 T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~-l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~ 318 (453)
|+..+ ....|+.+.....+.....+ +.-++...++.+-.+. +..++......+.+-+|||....++++...+
T Consensus 419 T~DAe---kFS~fFDdapIF~iPGRRyP----Vdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVFltGQeEIEt~~e 491 (902)
T KOG0923|consen 419 TMDAE---KFSAFFDDAPIFRIPGRRYP----VDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDILVFLTGQEEIETVKE 491 (902)
T ss_pred ccCHH---HHHHhccCCcEEeccCcccc----eeeecccCCchhHHHHHHhhheeeEeccCCccEEEEeccHHHHHHHHH
Confidence 98653 34556666444444333322 2223333333322222 2222322233456789999999999888887
Q ss_pred HHHhc---------CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEEEcCC------------
Q psy9620 319 SIQNY---------GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVINFDY------------ 377 (453)
Q Consensus 319 ~L~~~---------~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~------------ 377 (453)
.|... .+-+..+|+.++.+.+..|++--..|-.+|++||++++..|.|++|.+||.-++
T Consensus 492 ~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsynprtGm 571 (902)
T KOG0923|consen 492 NLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPRTGM 571 (902)
T ss_pred HHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCccccccCcCCCcCc
Confidence 77653 355788999999999999999999999999999999999999999999996333
Q ss_pred ------CCChhHHHHhhhcccCCCCcceEEEEEcC
Q psy9620 378 ------PNNSEDYIHRIGRTGRSDNTGTSYTFFTQ 406 (453)
Q Consensus 378 ------p~s~~~y~qr~GRagR~g~~g~~~~~~~~ 406 (453)
|-|.++-.||+|||||.| +|+|+-+|+.
T Consensus 572 esL~v~piSKAsA~QRaGRAGRtg-PGKCfRLYt~ 605 (902)
T KOG0923|consen 572 ESLLVTPISKASANQRAGRAGRTG-PGKCFRLYTA 605 (902)
T ss_pred eeEEEeeechhhhhhhccccCCCC-CCceEEeech
Confidence 456777899999999995 8999999984
|
|
| >PRK12326 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.3e-17 Score=164.27 Aligned_cols=260 Identities=18% Similarity=0.168 Sum_probs=189.5
Q ss_pred CCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhcC
Q psy9620 132 GFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGS 211 (453)
Q Consensus 132 g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~~ 211 (453)
|. .|+++|.-+.-.++.|+ |+.+.||+|||+++.+|++..... |..|.|++|+..||.|-++++..+..
T Consensus 76 g~-r~ydvQlig~l~Ll~G~--VaEM~TGEGKTLvA~l~a~l~AL~--------G~~VhvvT~NdyLA~RDae~m~~ly~ 144 (764)
T PRK12326 76 GL-RPFDVQLLGALRLLAGD--VIEMATGEGKTLAGAIAAAGYALQ--------GRRVHVITVNDYLARRDAEWMGPLYE 144 (764)
T ss_pred CC-CcchHHHHHHHHHhCCC--cccccCCCCHHHHHHHHHHHHHHc--------CCCeEEEcCCHHHHHHHHHHHHHHHH
Confidence 55 89999999998898886 889999999999999999877653 55599999999999999999999999
Q ss_pred CCCceEEEEeCCccCCCC--------------------------------------------------------------
Q psy9620 212 STYLRSTCVYGGASKGPQ-------------------------------------------------------------- 229 (453)
Q Consensus 212 ~~~~~~~~~~gg~~~~~~-------------------------------------------------------------- 229 (453)
.+++++.++.+..+....
T Consensus 145 ~LGLsvg~i~~~~~~~err~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLIDeArtPLiISg~ 224 (764)
T PRK12326 145 ALGLTVGWITEESTPEERRAAYACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLVDEALVPLVLAGS 224 (764)
T ss_pred hcCCEEEEECCCCCHHHHHHHHcCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhheeccccCceeeeCC
Confidence 999999988776543211
Q ss_pred --------------------------------------------------------------------------------
Q psy9620 230 -------------------------------------------------------------------------------- 229 (453)
Q Consensus 230 -------------------------------------------------------------------------------- 229 (453)
T Consensus 225 ~~~~~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~~ly~~~~~~~~~~~i~~AL~A~~l~~~d~dY 304 (764)
T PRK12326 225 TPGEAPRGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGIDLYSEEHVGTTLTQVNVALHAHALLQRDVHY 304 (764)
T ss_pred CcchhHHHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCccccCcchhHHHHHHHHHHHHHHHHHhcCCcE
Confidence
Q ss_pred --------------------------------------------------------CCceEEEEeccCcHHHHHHHHHhh
Q psy9620 230 --------------------------------------------------------PDRQVLMWSATWPREVQKLAEDFL 253 (453)
Q Consensus 230 --------------------------------------------------------~~~q~v~~SAT~~~~~~~~~~~~~ 253 (453)
.-..+..||.|...+..++.+.|-
T Consensus 305 iV~dgeV~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~t~~~Ef~~iY~ 384 (764)
T PRK12326 305 IVRDGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIGRYPTVCGMTGTAVAAGEQLRQFYD 384 (764)
T ss_pred EEECCEEEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHHhcchheeecCCChhHHHHHHHHhC
Confidence 122455677776555555544443
Q ss_pred ccceEEEecccccccCccceeEEEEccccchhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCC
Q psy9620 254 DSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGD 333 (453)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~ 333 (453)
.+.+.+ .... +....-.....+....+|...+.+-+..+. ....|+||.+.|....+.++..|.+.+++...+++.
T Consensus 385 l~Vv~I--Ptnk-p~~R~d~~d~iy~t~~~k~~Aii~ei~~~~-~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vLNAk 460 (764)
T PRK12326 385 LGVSVI--PPNK-PNIREDEADRVYATAAEKNDAIVEHIAEVH-ETGQPVLVGTHDVAESEELAERLRAAGVPAVVLNAK 460 (764)
T ss_pred CcEEEC--CCCC-CceeecCCCceEeCHHHHHHHHHHHHHHHH-HcCCCEEEEeCCHHHHHHHHHHHHhCCCcceeeccC
Confidence 332222 1111 000001111233334456665655555543 356799999999999999999999999999999886
Q ss_pred CCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCC----------CC-----cEEEEcCCCCChhHHHHhhhcccCCCCcc
Q psy9620 334 KSQQERDYVLKEFRNGRAGILVATDVAARGLDVD----------DV-----KFVINFDYPNNSEDYIHRIGRTGRSDNTG 398 (453)
Q Consensus 334 ~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip----------~v-----~~VI~~d~p~s~~~y~qr~GRagR~g~~g 398 (453)
-. +++.-+-.=.--.-.|.|||++++||.||. .| -|||-...+.|..-=.|-.||+||.|.+|
T Consensus 461 ~~--~~EA~IIa~AG~~gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQGDpG 538 (764)
T PRK12326 461 ND--AEEARIIAEAGKYGAVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQGDPG 538 (764)
T ss_pred ch--HhHHHHHHhcCCCCcEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccCCCCC
Confidence 33 333333222223457999999999999986 12 28999999999999999999999999999
Q ss_pred eEEEEEcCCC
Q psy9620 399 TSYTFFTQQN 408 (453)
Q Consensus 399 ~~~~~~~~~~ 408 (453)
.+..|++-+|
T Consensus 539 ss~f~lSleD 548 (764)
T PRK12326 539 SSVFFVSLED 548 (764)
T ss_pred ceeEEEEcch
Confidence 9999998665
|
|
| >PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins | Back alignment and domain information |
|---|
Probab=99.77 E-value=2e-18 Score=129.64 Aligned_cols=78 Identities=44% Similarity=0.726 Sum_probs=75.3
Q ss_pred HHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEEEcCCCCChhHHHHhhhcccCCC
Q psy9620 318 KSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSD 395 (453)
Q Consensus 318 ~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g 395 (453)
++|...++.+..+|+++++.+|..+++.|++++.+|||||+++++|||+|++++||++++|.|..+|.|++||++|.|
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 367888999999999999999999999999999999999999999999999999999999999999999999999975
|
It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B .... |
| >PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=8.2e-16 Score=163.72 Aligned_cols=124 Identities=20% Similarity=0.336 Sum_probs=105.1
Q ss_pred chhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcC---CCcEEEEecc
Q psy9620 283 EKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNG---RAGILVATDV 359 (453)
Q Consensus 283 ~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g---~~~vLvaT~~ 359 (453)
.|...|..+|..+.. ...++|||+......+.|.++|...++....+||.++..+|..+++.|... ..-+|++|.+
T Consensus 471 gKl~lLdkLL~~Lk~-~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrA 549 (1033)
T PLN03142 471 GKMVLLDKLLPKLKE-RDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRA 549 (1033)
T ss_pred hHHHHHHHHHHHHHh-cCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccc
Confidence 344445555555533 467999999999999999999999999999999999999999999999753 3457899999
Q ss_pred CccCCCCCCCcEEEEcCCCCChhHHHHhhhcccCCCCcce--EEEEEcCC
Q psy9620 360 AARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGT--SYTFFTQQ 407 (453)
Q Consensus 360 ~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~--~~~~~~~~ 407 (453)
.+.|||+..+++||+||+++|+....|++||+-|.|+... +|-|++..
T Consensus 550 GGlGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~g 599 (1033)
T PLN03142 550 GGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEY 599 (1033)
T ss_pred cccCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCC
Confidence 9999999999999999999999999999999999997754 44555554
|
|
| >KOG0924|consensus | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.3e-16 Score=155.95 Aligned_cols=253 Identities=20% Similarity=0.288 Sum_probs=169.0
Q ss_pred CHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHH-hcCCCCc
Q psy9620 137 TPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARD-FGSSTYL 215 (453)
Q Consensus 137 ~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~-~~~~~~~ 215 (453)
...+.+.+..+..++-+++++.||||||.. +| +++....-. ....+-+..|.|.-|..++..+.. ++-.++-
T Consensus 358 f~~R~~ll~~ir~n~vvvivgETGSGKTTQ--l~--QyL~edGY~---~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~ 430 (1042)
T KOG0924|consen 358 FACRDQLLSVIRENQVVVIVGETGSGKTTQ--LA--QYLYEDGYA---DNGMIGCTQPRRVAAISVAKRVAEEMGVTLGD 430 (1042)
T ss_pred HHHHHHHHHHHhhCcEEEEEecCCCCchhh--hH--HHHHhcccc---cCCeeeecCchHHHHHHHHHHHHHHhCCcccc
Confidence 344555555666778899999999999964 33 333333221 233566778999999988776653 3222221
Q ss_pred eEE--EEeCCccCCCC----------------------------------------------------CCceEEEEeccC
Q psy9620 216 RST--CVYGGASKGPQ----------------------------------------------------PDRQVLMWSATW 241 (453)
Q Consensus 216 ~~~--~~~gg~~~~~~----------------------------------------------------~~~q~v~~SAT~ 241 (453)
.+. +.+.+...... .+.++|.+|||+
T Consensus 431 ~VGYsIRFEdvT~~~T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERslNtDilfGllk~~larRrdlKliVtSATm 510 (1042)
T KOG0924|consen 431 TVGYSIRFEDVTSEDTKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRRDLKLIVTSATM 510 (1042)
T ss_pred ccceEEEeeecCCCceeEEEeccchHHHHHhhhhhhhheeEEEechhhhcccchHHHHHHHHHHHHhhccceEEEeeccc
Confidence 111 11111110000 678999999998
Q ss_pred cHHHHHHHHHhhccceEEEecccccccCccceeEEEEccccchhhhHHHHHHhh----hcCCCCcEEEEEcchhHHHHHH
Q psy9620 242 PREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDI----SSKDENKTIIFAETKRKVDKIT 317 (453)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~----~~~~~~~~lVF~~s~~~~~~l~ 317 (453)
.. +++ ..|+.+.....+.....++. .+.......+.+...+... .....+-+|||....++++..+
T Consensus 511 ~a--~kf-~nfFgn~p~f~IpGRTyPV~-------~~~~k~p~eDYVeaavkq~v~Ihl~~~~GdilIfmtGqediE~t~ 580 (1042)
T KOG0924|consen 511 DA--QKF-SNFFGNCPQFTIPGRTYPVE-------IMYTKTPVEDYVEAAVKQAVQIHLSGPPGDILIFMTGQEDIECTC 580 (1042)
T ss_pred cH--HHH-HHHhCCCceeeecCCccceE-------EEeccCchHHHHHHHHhhheEeeccCCCCCEEEecCCCcchhHHH
Confidence 54 344 44555555555544332211 1111222333344444432 2334578999999988877666
Q ss_pred HHHHhc----------CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEEEcCC----------
Q psy9620 318 KSIQNY----------GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVINFDY---------- 377 (453)
Q Consensus 318 ~~L~~~----------~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~---------- 377 (453)
..+... ++.+..+++.|+...+..++.....|..+++|||++++..|.||++.+||.-++
T Consensus 581 ~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~ 660 (1042)
T KOG0924|consen 581 DIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRI 660 (1042)
T ss_pred HHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCceeeeeccccc
Confidence 665431 678999999999999999999999999999999999999999999999996432
Q ss_pred --------CCChhHHHHhhhcccCCCCcceEEEEEcCC
Q psy9620 378 --------PNNSEDYIHRIGRTGRSDNTGTSYTFFTQQ 407 (453)
Q Consensus 378 --------p~s~~~y~qr~GRagR~g~~g~~~~~~~~~ 407 (453)
|-|.+.--||+|||||. .+|.||-+|+..
T Consensus 661 G~D~L~~~pIS~AnA~QRaGRAGRt-~pG~cYRlYTe~ 697 (1042)
T KOG0924|consen 661 GMDALQIVPISQANADQRAGRAGRT-GPGTCYRLYTED 697 (1042)
T ss_pred ccceeEEEechhccchhhccccCCC-CCcceeeehhhh
Confidence 56777789999999999 489999999974
|
|
| >KOG0949|consensus | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.6e-16 Score=158.36 Aligned_cols=90 Identities=21% Similarity=0.268 Sum_probs=73.3
Q ss_pred EEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEEEcC-CCCChhHHHHhhhcccCCCCcceEEEEEc
Q psy9620 327 AVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVINFD-YPNNSEDYIHRIGRTGRSDNTGTSYTFFT 405 (453)
Q Consensus 327 ~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d-~p~s~~~y~qr~GRagR~g~~g~~~~~~~ 405 (453)
+.++|++|+...|..|+-.||.|...||+||.+++-|||.|.-++|+--| +-.++-.|.|++|||||.|-+-..-+.|.
T Consensus 965 iG~HHaglNr~yR~~VEvLFR~g~L~VlfaT~TLsLGiNMPCrTVvF~gDsLQL~plny~QmaGRAGRRGFD~lGnV~Fm 1044 (1330)
T KOG0949|consen 965 IGVHHAGLNRKYRSLVEVLFRQGHLQVLFATETLSLGINMPCRTVVFAGDSLQLDPLNYKQMAGRAGRRGFDTLGNVVFM 1044 (1330)
T ss_pred ccccccccchHHHHHHHHHhhcCceEEEEEeeehhcccCCCceeEEEeccccccCchhHHhhhccccccccccccceEEE
Confidence 67899999999999999999999999999999999999999888888776 45678999999999999987644333333
Q ss_pred CCChHHHHHHH
Q psy9620 406 QQNSRQAKDLI 416 (453)
Q Consensus 406 ~~~~~~~~~l~ 416 (453)
.--...+++|+
T Consensus 1045 giP~~kv~rLl 1055 (1330)
T KOG0949|consen 1045 GIPRQKVQRLL 1055 (1330)
T ss_pred eCcHHHHHHHH
Confidence 33334444444
|
|
| >PRK13103 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.5e-15 Score=156.84 Aligned_cols=126 Identities=17% Similarity=0.252 Sum_probs=97.7
Q ss_pred ccccchhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcC-CCcEEEEe
Q psy9620 279 CAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNG-RAGILVAT 357 (453)
Q Consensus 279 ~~~~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g-~~~vLvaT 357 (453)
....+|...+++-+..+. ..+.|+||-+.|.+..+.|++.|...+++..++++.- .+++.-+-. ..| .-.|.|||
T Consensus 429 ~t~~eK~~Ai~~ei~~~~-~~GrPVLVGT~SVe~SE~ls~~L~~~gi~h~VLNAk~--~~~EA~IIa-~AG~~GaVTIAT 504 (913)
T PRK13103 429 LTAEEKYAAIITDIKECM-ALGRPVLVGTATIETSEHMSNLLKKEGIEHKVLNAKY--HEKEAEIIA-QAGRPGALTIAT 504 (913)
T ss_pred cCHHHHHHHHHHHHHHHH-hCCCCEEEEeCCHHHHHHHHHHHHHcCCcHHHhcccc--chhHHHHHH-cCCCCCcEEEec
Confidence 334455555555555443 3477999999999999999999999999887777753 344443333 334 56799999
Q ss_pred ccCccCCCCC--------------------------------CC-----cEEEEcCCCCChhHHHHhhhcccCCCCcceE
Q psy9620 358 DVAARGLDVD--------------------------------DV-----KFVINFDYPNNSEDYIHRIGRTGRSDNTGTS 400 (453)
Q Consensus 358 ~~~~~GiDip--------------------------------~v-----~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~ 400 (453)
++++||.||. .| -|||-...+.|..-=.|-.||+||.|.+|.+
T Consensus 505 NMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS 584 (913)
T PRK13103 505 NMAGRGTDILLGGNWEVEVAALENPTPEQIAQIKADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSS 584 (913)
T ss_pred cCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCce
Confidence 9999999994 12 2789888999988889999999999999999
Q ss_pred EEEEcCCC
Q psy9620 401 YTFFTQQN 408 (453)
Q Consensus 401 ~~~~~~~~ 408 (453)
-.|++-+|
T Consensus 585 ~f~lSlED 592 (913)
T PRK13103 585 RFYLSLED 592 (913)
T ss_pred EEEEEcCc
Confidence 99998765
|
|
| >PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
Probab=99.67 E-value=7.3e-15 Score=156.02 Aligned_cols=131 Identities=15% Similarity=0.239 Sum_probs=92.0
Q ss_pred hHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCC
Q psy9620 287 KLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDV 366 (453)
Q Consensus 287 ~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDi 366 (453)
.+.+.+..+. ...+++||+++|.+..+.+++.|....+.+ ...+... .+..++++|+.++..||++|..+.+|||+
T Consensus 635 ~~~~~i~~~~-~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~vLlG~~sFwEGVD~ 710 (820)
T PRK07246 635 EIAKRLEELK-QLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQILLGLGSFWEGVDF 710 (820)
T ss_pred HHHHHHHHHH-hcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCeEEEecchhhCCCCC
Confidence 4445554555 456899999999999999999997665555 4444222 25668999999989999999999999999
Q ss_pred C--CCcEEEEcCCCC----C--------------------------hhHHHHhhhcccCCCCcceEEEEEcCC--ChHHH
Q psy9620 367 D--DVKFVINFDYPN----N--------------------------SEDYIHRIGRTGRSDNTGTSYTFFTQQ--NSRQA 412 (453)
Q Consensus 367 p--~v~~VI~~d~p~----s--------------------------~~~y~qr~GRagR~g~~g~~~~~~~~~--~~~~~ 412 (453)
| +...||...+|. + +..+.|-+||.-|...+--+++++++. ...+-
T Consensus 711 p~~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv~ilD~R~~~k~Yg 790 (820)
T PRK07246 711 VQADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAVLILDRRILTKSYG 790 (820)
T ss_pred CCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEEEEECCcccccHHH
Confidence 7 345566655552 1 223578999999986554455666654 34556
Q ss_pred HHHHHHHHh
Q psy9620 413 KDLIDVLTE 421 (453)
Q Consensus 413 ~~l~~~l~~ 421 (453)
+.+++.|-.
T Consensus 791 ~~~l~sLP~ 799 (820)
T PRK07246 791 KQILASLAE 799 (820)
T ss_pred HHHHHhCCC
Confidence 666666543
|
|
| >KOG4150|consensus | Back alignment and domain information |
|---|
Probab=99.67 E-value=9.8e-16 Score=147.20 Aligned_cols=267 Identities=13% Similarity=0.101 Sum_probs=177.5
Q ss_pred HHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHH
Q psy9620 129 KRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARD 208 (453)
Q Consensus 129 ~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~ 208 (453)
..+-......+|.+++..+.+|+++++.-.|.+||.++|.+.....+... .....+++.||+++++...+.+.-
T Consensus 280 ~~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~------~~s~~~~~~~~~~~~~~~~~~~~V 353 (1034)
T KOG4150|consen 280 NKNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLC------HATNSLLPSEMVEHLRNGSKGQVV 353 (1034)
T ss_pred hcccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcC------cccceecchhHHHHhhccCCceEE
Confidence 33445578899999999999999999999999999999998887655433 233467888888887764322111
Q ss_pred hcCC-CCce--EEEEeCCccCCCC--------------------------------------------------------
Q psy9620 209 FGSS-TYLR--STCVYGGASKGPQ-------------------------------------------------------- 229 (453)
Q Consensus 209 ~~~~-~~~~--~~~~~gg~~~~~~-------------------------------------------------------- 229 (453)
.... ...+ ++..+.+.+....
T Consensus 354 ~~~~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~ 433 (1034)
T KOG4150|consen 354 HVEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFPTKALAQ 433 (1034)
T ss_pred EEEehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecchhhHHH
Confidence 0000 0000 1111111111100
Q ss_pred ----------------CCceEEEEeccCcHHHHHHHHHhhccce-EEEecccccccCccceeEEEEcc------ccchhh
Q psy9620 230 ----------------PDRQVLMWSATWPREVQKLAEDFLDSYI-QINIGSLTLSANHNIQQVVEVCA------EHEKEN 286 (453)
Q Consensus 230 ----------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~------~~~k~~ 286 (453)
...|++-.+||+...++.+..-+--+-+ .+.++... ..-+..+.+-+ +.++..
T Consensus 434 ~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DGSP----s~~K~~V~WNP~~~P~~~~~~~~ 509 (1034)
T KOG4150|consen 434 DQLRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANLSELELVTIDGSP----SSEKLFVLWNPSAPPTSKSEKSS 509 (1034)
T ss_pred HHHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEecCCC----CccceEEEeCCCCCCcchhhhhh
Confidence 5678888888887666655443332222 22222221 11223333222 122223
Q ss_pred hHH---HHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhc----C----CeEEEEcCCCCHHHHHHHHHHHhcCCCcEEE
Q psy9620 287 KLF---GLLNDISSKDENKTIIFAETKRKVDKITKSIQNY----G----WAAVGIHGDKSQQERDYVLKEFRNGRAGILV 355 (453)
Q Consensus 287 ~l~---~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~----~----~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLv 355 (453)
.+. .++.++.. .+-++|.||++++-|+.+....++. + -.+..+.|+-..++|..+..+.-.|+..-+|
T Consensus 510 ~i~E~s~~~~~~i~-~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~giI 588 (1034)
T KOG4150|consen 510 KVVEVSHLFAEMVQ-HGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGII 588 (1034)
T ss_pred HHHHHHHHHHHHHH-cCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeeeEEE
Confidence 332 23333322 3559999999999999877665542 1 1245678899999999999999999999999
Q ss_pred EeccCccCCCCCCCcEEEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcC
Q psy9620 356 ATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQ 406 (453)
Q Consensus 356 aT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~ 406 (453)
||++++-||||...+.|++.++|.|++.+.|..|||||.+++..++.+...
T Consensus 589 aTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~~ 639 (1034)
T KOG4150|consen 589 ATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKPSLAVYVAFL 639 (1034)
T ss_pred ecchhhhccccccceeEEEccCchhHHHHHHHhccccccCCCceEEEEEec
Confidence 999999999999999999999999999999999999999988877665543
|
|
| >PRK12903 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.67 E-value=4e-15 Score=152.26 Aligned_cols=259 Identities=19% Similarity=0.190 Sum_probs=186.0
Q ss_pred CCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhcC
Q psy9620 132 GFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGS 211 (453)
Q Consensus 132 g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~~ 211 (453)
|. .|+++|.-..-.+..|+ |+.+.||-|||+++.+|++...+. |..|-|++..--||..=++++..+..
T Consensus 76 G~-r~ydVQliGglvLh~G~--IAEMkTGEGKTLvAtLpayLnAL~--------GkgVhVVTvNdYLA~RDae~mg~vy~ 144 (925)
T PRK12903 76 GK-RPYDVQIIGGIILDLGS--VAEMKTGEGKTITSIAPVYLNALT--------GKGVIVSTVNEYLAERDAEEMGKVFN 144 (925)
T ss_pred CC-CcCchHHHHHHHHhcCC--eeeecCCCCccHHHHHHHHHHHhc--------CCceEEEecchhhhhhhHHHHHHHHH
Confidence 55 89999988887777776 899999999999999998765443 44588899999999998899988888
Q ss_pred CCCceEEEEeCCccCCCC--------------------------------------------------------------
Q psy9620 212 STYLRSTCVYGGASKGPQ-------------------------------------------------------------- 229 (453)
Q Consensus 212 ~~~~~~~~~~gg~~~~~~-------------------------------------------------------------- 229 (453)
.+++.+.++..+......
T Consensus 145 fLGLsvG~i~~~~~~~~rr~aY~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSILIDEArTPLIISg~ 224 (925)
T PRK12903 145 FLGLSVGINKANMDPNLKREAYACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILIDEAKTPLIISGG 224 (925)
T ss_pred HhCCceeeeCCCCChHHHHHhccCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchheeecccCCcccccCC
Confidence 888888887665432211
Q ss_pred --------------------------------------------------------------------------------
Q psy9620 230 -------------------------------------------------------------------------------- 229 (453)
Q Consensus 230 -------------------------------------------------------------------------------- 229 (453)
T Consensus 225 ~~~~~~~Y~~~~~~v~~L~~~dy~iDek~k~v~LTe~G~~~~E~~l~i~nLy~~~n~~l~h~i~~AL~A~~lf~rd~dYi 304 (925)
T PRK12903 225 QSNDSNLYLAADQFVRTLKEDDYKIDEETKAISLTEKGIKKANKFFKLKNLYDIENSELVHRIQNALRAHKVMKEDVEYI 304 (925)
T ss_pred CccchHHHHHHHHHHHhccccceEEecccceEEECHhHHHHHHHHcCCCcccChhhHHHHHHHHHHHHHHHHHhcCCceE
Confidence
Q ss_pred -------------------------------------------------------CCceEEEEeccCcHHHHHHHHHhhc
Q psy9620 230 -------------------------------------------------------PDRQVLMWSATWPREVQKLAEDFLD 254 (453)
Q Consensus 230 -------------------------------------------------------~~~q~v~~SAT~~~~~~~~~~~~~~ 254 (453)
.-.++..||.|...+..++.+.|-.
T Consensus 305 V~dg~V~IVDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAsIT~QnfFr~Y~kLsGMTGTA~te~~Ef~~iY~l 384 (925)
T PRK12903 305 VRDGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKTEEQEFIDIYNM 384 (925)
T ss_pred EECCEEEEEECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhhccCCCCHHHHHHHHHHhCC
Confidence 1234556777765555555544433
Q ss_pred cceEEEecccccccCccceeEEEEccccchhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCC
Q psy9620 255 SYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDK 334 (453)
Q Consensus 255 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~ 334 (453)
+.+.+....+. ...-.....+....+|...+..-+..+. ....|+||.|.|.+..+.|+..|...+++...+++.
T Consensus 385 ~Vv~IPTnkP~---~R~D~~d~iy~t~~~K~~Aii~ei~~~~-~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk- 459 (925)
T PRK12903 385 RVNVVPTNKPV---IRKDEPDSIFGTKHAKWKAVVKEVKRVH-KKGQPILIGTAQVEDSETLHELLLEANIPHTVLNAK- 459 (925)
T ss_pred CEEECCCCCCe---eeeeCCCcEEEcHHHHHHHHHHHHHHHH-hcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeeccc-
Confidence 33322211110 0000011233344556666665555543 346799999999999999999999999999889885
Q ss_pred CHHHHHHHHHHHhcC-CCcEEEEeccCccCCCCCCCc--------EEEEcCCCCChhHHHHhhhcccCCCCcceEEEEEc
Q psy9620 335 SQQERDYVLKEFRNG-RAGILVATDVAARGLDVDDVK--------FVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFT 405 (453)
Q Consensus 335 ~~~~r~~~~~~f~~g-~~~vLvaT~~~~~GiDip~v~--------~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~ 405 (453)
+.+++..+-. ..| .-.|.|||++++||.||.--. |||....|.|..-=.|..||+||.|.+|.+..|++
T Consensus 460 -~~e~EA~IIa-~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~lS 537 (925)
T PRK12903 460 -QNAREAEIIA-KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFFIS 537 (925)
T ss_pred -chhhHHHHHH-hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceEEEe
Confidence 3445444443 445 567999999999999996322 89999999998888899999999999999999988
Q ss_pred CCC
Q psy9620 406 QQN 408 (453)
Q Consensus 406 ~~~ 408 (453)
-+|
T Consensus 538 LeD 540 (925)
T PRK12903 538 LDD 540 (925)
T ss_pred cch
Confidence 665
|
|
| >KOG0953|consensus | Back alignment and domain information |
|---|
Probab=99.65 E-value=7.3e-15 Score=141.20 Aligned_cols=245 Identities=20% Similarity=0.232 Sum_probs=152.1
Q ss_pred CCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhcCCCCceEEEEeCCccCCCC
Q psy9620 150 GSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGSSTYLRSTCVYGGASKGPQ 229 (453)
Q Consensus 150 g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~ 229 (453)
.+-++-++||.||||.- +|+++... ...++.-|.|-||..+++.+.+.+ +.+..++|.......
T Consensus 191 RkIi~H~GPTNSGKTy~----ALqrl~~a--------ksGvycGPLrLLA~EV~~r~na~g----ipCdL~TGeE~~~~~ 254 (700)
T KOG0953|consen 191 RKIIMHVGPTNSGKTYR----ALQRLKSA--------KSGVYCGPLRLLAHEVYDRLNALG----IPCDLLTGEERRFVL 254 (700)
T ss_pred heEEEEeCCCCCchhHH----HHHHHhhh--------ccceecchHHHHHHHHHHHhhhcC----CCccccccceeeecC
Confidence 34467789999999954 46666543 338999999999999999999874 666666665544333
Q ss_pred C--------CceEEEEeccCc------HHHHHHHH---------Hhh---ccceEEEeccccc---------ccCcccee
Q psy9620 230 P--------DRQVLMWSATWP------REVQKLAE---------DFL---DSYIQINIGSLTL---------SANHNIQQ 274 (453)
Q Consensus 230 ~--------~~q~v~~SAT~~------~~~~~~~~---------~~~---~~~~~~~~~~~~~---------~~~~~i~~ 274 (453)
. .+-+-|+|-+.+ .+++.+.. .++ .+-+++.-+...+ +-......
T Consensus 255 ~~~~~a~hvScTVEM~sv~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdEiHLCGepsvldlV~~i~k~TGd~vev~ 334 (700)
T KOG0953|consen 255 DNGNPAQHVSCTVEMVSVNTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAADEIHLCGEPSVLDLVRKILKMTGDDVEVR 334 (700)
T ss_pred CCCCcccceEEEEEEeecCCceEEEEehhHHhhcCcccchHHHHHHHhhhhhhhhccCCchHHHHHHHHHhhcCCeeEEE
Confidence 1 223334444433 22222110 000 0111111000000 00000001
Q ss_pred EEEEccccchhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCe-EEEEcCCCCHHHHHHHHHHHhc--CCC
Q psy9620 275 VVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWA-AVGIHGDKSQQERDYVLKEFRN--GRA 351 (453)
Q Consensus 275 ~~~~~~~~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~-~~~~h~~~~~~~r~~~~~~f~~--g~~ 351 (453)
.++... .......++..+.+-.. --.|.|-|++++-.+...+.+.+.. +.+++|+++++.|.+--..|.+ +++
T Consensus 335 ~YeRl~---pL~v~~~~~~sl~nlk~-GDCvV~FSkk~I~~~k~kIE~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~ 410 (700)
T KOG0953|consen 335 EYERLS---PLVVEETALGSLSNLKP-GDCVVAFSKKDIFTVKKKIEKAGNHKCAVIYGSLPPETRLAQAALFNDPSNEC 410 (700)
T ss_pred eecccC---cceehhhhhhhhccCCC-CCeEEEeehhhHHHHHHHHHHhcCcceEEEecCCCCchhHHHHHHhCCCCCcc
Confidence 111111 11111122222222222 2356788899999999999988766 9999999999999999999997 899
Q ss_pred cEEEEeccCccCCCCCCCcEEEEcCCC---------CChhHHHHhhhcccCCCC---cceEEEEEcCCChHHHHHHH
Q psy9620 352 GILVATDVAARGLDVDDVKFVINFDYP---------NNSEDYIHRIGRTGRSDN---TGTSYTFFTQQNSRQAKDLI 416 (453)
Q Consensus 352 ~vLvaT~~~~~GiDip~v~~VI~~d~p---------~s~~~y~qr~GRagR~g~---~g~~~~~~~~~~~~~~~~l~ 416 (453)
+||||||++++|+|+ +++.||.+++- .+..+..|.+|||||.+. .|.+.+|. .+|...+++.+
T Consensus 411 dvlVAsDAIGMGLNL-~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl~-~eDL~~L~~~l 485 (700)
T KOG0953|consen 411 DVLVASDAIGMGLNL-NIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYPQGEVTTLH-SEDLKLLKRIL 485 (700)
T ss_pred ceEEeeccccccccc-ceeEEEEeecccCCcccceeccHHHHHHHhhcccccccCCcCceEEEee-HhhHHHHHHHH
Confidence 999999999999999 89999988764 357788999999999863 36666654 33444444433
|
|
| >KOG0926|consensus | Back alignment and domain information |
|---|
Probab=99.65 E-value=6.9e-15 Score=146.43 Aligned_cols=80 Identities=25% Similarity=0.445 Sum_probs=68.4
Q ss_pred EEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEEE--------cCCCCCh----------hHHHHhh
Q psy9620 327 AVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVIN--------FDYPNNS----------EDYIHRI 388 (453)
Q Consensus 327 ~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~--------~d~p~s~----------~~y~qr~ 388 (453)
|..+++-++..++..|++.-..|..-++|||++++..|.||+|.+||. ||.-..+ ++--||+
T Consensus 607 vLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRA 686 (1172)
T KOG0926|consen 607 VLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRA 686 (1172)
T ss_pred EeehhhhcCHHHhhhhccCCCCCceEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhc
Confidence 677888899999999999999999999999999999999999999996 5544333 3447999
Q ss_pred hcccCCCCcceEEEEEcCC
Q psy9620 389 GRTGRSDNTGTSYTFFTQQ 407 (453)
Q Consensus 389 GRagR~g~~g~~~~~~~~~ 407 (453)
|||||.| +|+||-+|+..
T Consensus 687 GRAGRtg-pGHcYRLYSSA 704 (1172)
T KOG0926|consen 687 GRAGRTG-PGHCYRLYSSA 704 (1172)
T ss_pred cccCCCC-CCceeehhhhH
Confidence 9999995 89999998853
|
|
| >CHL00122 secA preprotein translocase subunit SecA; Validated | Back alignment and domain information |
|---|
Probab=99.64 E-value=2e-14 Score=147.91 Aligned_cols=83 Identities=28% Similarity=0.265 Sum_probs=68.2
Q ss_pred CCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhcC
Q psy9620 132 GFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGS 211 (453)
Q Consensus 132 g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~~ 211 (453)
|+ .|+++|.-+.-.+..| -|+.+.||.|||+++.+|++..... |..|.|++++..||.+-++++..+..
T Consensus 74 G~-r~ydvQlig~l~L~~G--~IaEm~TGEGKTL~a~l~ayl~aL~--------G~~VhVvT~NdyLA~RD~e~m~pvy~ 142 (870)
T CHL00122 74 GL-RHFDVQLIGGLVLNDG--KIAEMKTGEGKTLVATLPAYLNALT--------GKGVHIVTVNDYLAKRDQEWMGQIYR 142 (870)
T ss_pred CC-CCCchHhhhhHhhcCC--ccccccCCCCchHHHHHHHHHHHhc--------CCceEEEeCCHHHHHHHHHHHHHHHH
Confidence 66 6889998877666555 4999999999999999999654432 45599999999999999999999988
Q ss_pred CCCceEEEEeCCcc
Q psy9620 212 STYLRSTCVYGGAS 225 (453)
Q Consensus 212 ~~~~~~~~~~gg~~ 225 (453)
.+++.+.++.++.+
T Consensus 143 ~LGLsvg~i~~~~~ 156 (870)
T CHL00122 143 FLGLTVGLIQEGMS 156 (870)
T ss_pred HcCCceeeeCCCCC
Confidence 89999988766544
|
|
| >KOG0925|consensus | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.5e-14 Score=134.46 Aligned_cols=273 Identities=17% Similarity=0.248 Sum_probs=177.2
Q ss_pred cccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEE
Q psy9620 112 ITEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLV 191 (453)
Q Consensus 112 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vli 191 (453)
+..|...++++...+.+++.---..+..+.+.+..+.+++-+++++.||||||...--.++....... ..|.+
T Consensus 24 ~Npf~~~p~s~rY~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~~-------~~v~C 96 (699)
T KOG0925|consen 24 INPFNGKPYSQRYYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSHL-------TGVAC 96 (699)
T ss_pred cCCCCCCcCcHHHHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhhc-------cceee
Confidence 56677888888888888766333445556666777778999999999999999654333444333321 23778
Q ss_pred EcCCHHHHHHHHHHHHH-----hcCCCCceEE--EEeCCccC--------------------------------------
Q psy9620 192 LAPTRELAQQIQEVARD-----FGSSTYLRST--CVYGGASK-------------------------------------- 226 (453)
Q Consensus 192 l~Ptr~La~q~~~~~~~-----~~~~~~~~~~--~~~gg~~~-------------------------------------- 226 (453)
..|.|--|.+++..+.+ ++...+..+- -+.+....
T Consensus 97 TQprrvaamsva~RVadEMDv~lG~EVGysIrfEdC~~~~T~Lky~tDgmLlrEams~p~l~~y~viiLDeahERtlATD 176 (699)
T KOG0925|consen 97 TQPRRVAAMSVAQRVADEMDVTLGEEVGYSIRFEDCTSPNTLLKYCTDGMLLREAMSDPLLGRYGVIILDEAHERTLATD 176 (699)
T ss_pred cCchHHHHHHHHHHHHHHhccccchhccccccccccCChhHHHHHhcchHHHHHHhhCcccccccEEEechhhhhhHHHH
Confidence 88999988887665543 2222221110 00000000
Q ss_pred ----------CCCCCceEEEEeccCcHHHHHHHHHhhccceEEEecccccccCccceeEEEEccccchhhhHHHHHH---
Q psy9620 227 ----------GPQPDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLN--- 293 (453)
Q Consensus 227 ----------~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~--- 293 (453)
...++.++|.||||+.. .....|+.++..+.+.. . ..+..+ +.++ ...+.+...++
T Consensus 177 iLmGllk~v~~~rpdLk~vvmSatl~a---~Kfq~yf~n~Pll~vpg-~----~PvEi~--Yt~e-~erDylEaairtV~ 245 (699)
T KOG0925|consen 177 ILMGLLKEVVRNRPDLKLVVMSATLDA---EKFQRYFGNAPLLAVPG-T----HPVEIF--YTPE-PERDYLEAAIRTVL 245 (699)
T ss_pred HHHHHHHHHHhhCCCceEEEeecccch---HHHHHHhCCCCeeecCC-C----CceEEE--ecCC-CChhHHHHHHHHHH
Confidence 00088999999999754 34466777766665543 1 222222 2222 22233333333
Q ss_pred -hhhcCCCCcEEEEEcchhHHHHHHHHHHhc---------CCeEEEEcCCCCHHHHHHHHHHHhc---C--CCcEEEEec
Q psy9620 294 -DISSKDENKTIIFAETKRKVDKITKSIQNY---------GWAAVGIHGDKSQQERDYVLKEFRN---G--RAGILVATD 358 (453)
Q Consensus 294 -~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~---------~~~~~~~h~~~~~~~r~~~~~~f~~---g--~~~vLvaT~ 358 (453)
.......+-+|||....++++..++.+... .+.|..+| +.++..+++-... | ..+|+|+|+
T Consensus 246 qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvVvstn 321 (699)
T KOG0925|consen 246 QIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVVVSTN 321 (699)
T ss_pred HHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCccceEEEEec
Confidence 223345778999999999999888887742 35677888 3344444333321 2 368999999
Q ss_pred cCccCCCCCCCcEEEEcCC------------------CCChhHHHHhhhcccCCCCcceEEEEEcCC
Q psy9620 359 VAARGLDVDDVKFVINFDY------------------PNNSEDYIHRIGRTGRSDNTGTSYTFFTQQ 407 (453)
Q Consensus 359 ~~~~GiDip~v~~VI~~d~------------------p~s~~~y~qr~GRagR~g~~g~~~~~~~~~ 407 (453)
+++..+.++.|.+||.-++ |-|..+-.||.|||||. .+|+|+.+++++
T Consensus 322 iaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt-~pGkcfrLYte~ 387 (699)
T KOG0925|consen 322 IAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEE 387 (699)
T ss_pred chheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC-CCCceEEeecHH
Confidence 9999999999999996443 56778889999999998 799999999975
|
|
| >smart00490 HELICc helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.4e-15 Score=115.07 Aligned_cols=81 Identities=43% Similarity=0.774 Sum_probs=77.3
Q ss_pred HHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEEEcCCCCChhHHHHhhhcccCC
Q psy9620 315 KITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRS 394 (453)
Q Consensus 315 ~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~ 394 (453)
.+++.|...++.+..+|++++..+|..+++.|+++...|||+|+++++|+|+|++++||.+++|.+..+|.|++||++|.
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 81 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRA 81 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccC
Confidence 46778888899999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred C
Q psy9620 395 D 395 (453)
Q Consensus 395 g 395 (453)
|
T Consensus 82 g 82 (82)
T smart00490 82 G 82 (82)
T ss_pred C
Confidence 4
|
|
| >TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family | Back alignment and domain information |
|---|
Probab=99.62 E-value=7.9e-14 Score=145.70 Aligned_cols=94 Identities=16% Similarity=0.196 Sum_probs=74.2
Q ss_pred CCcEEEEEcchhHHHHHHHHHHhc-----CCeEEEEcCCCCHH---------------------HHHHHHHHHhc-CCCc
Q psy9620 300 ENKTIIFAETKRKVDKITKSIQNY-----GWAAVGIHGDKSQQ---------------------ERDYVLKEFRN-GRAG 352 (453)
Q Consensus 300 ~~~~lVF~~s~~~~~~l~~~L~~~-----~~~~~~~h~~~~~~---------------------~r~~~~~~f~~-g~~~ 352 (453)
..+++|||.++..|..+++.|.+. +..++.+++..+.. ....++++|++ +..+
T Consensus 514 ~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ 593 (667)
T TIGR00348 514 KFKAMVVAISRYACVEEKNALDEELNEKFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPK 593 (667)
T ss_pred cCceeEEEecHHHHHHHHHHHHhhcccccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCce
Confidence 479999999999999999998664 24455666654332 22468889976 6889
Q ss_pred EEEEeccCccCCCCCCCcEEEEcCCCCChhHHHHhhhcccCC
Q psy9620 353 ILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRS 394 (453)
Q Consensus 353 vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~ 394 (453)
|||+++++..|+|.|.+++++..-+..+ ..++|.+||+.|.
T Consensus 594 ilIVvdmllTGFDaP~l~tLyldKplk~-h~LlQai~R~nR~ 634 (667)
T TIGR00348 594 LLIVVDMLLTGFDAPILNTLYLDKPLKY-HGLLQAIARTNRI 634 (667)
T ss_pred EEEEEcccccccCCCccceEEEeccccc-cHHHHHHHHhccc
Confidence 9999999999999999998777665554 4689999999994
|
Members of this family are assumed to differ from each other in DNA site specificity. |
| >PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.8e-15 Score=130.36 Aligned_cols=83 Identities=43% Similarity=0.606 Sum_probs=74.3
Q ss_pred CHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhcCCCCce
Q psy9620 137 TPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGSSTYLR 216 (453)
Q Consensus 137 ~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~~~~~~~ 216 (453)
||+|.++|+.+.+++++++.||||+|||++|++|++..+... ...++||++|+++|++|+.+.+..++....++
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~------~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~ 74 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEG------KDARVLIIVPTRALAEQQFERLRKFFSNTNVR 74 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTT------SSSEEEEEESSHHHHHHHHHHHHHHTTTTTSS
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccC------CCceEEEEeecccccccccccccccccccccc
Confidence 789999999999999999999999999999999999888764 13379999999999999999999999888889
Q ss_pred EEEEeCCcc
Q psy9620 217 STCVYGGAS 225 (453)
Q Consensus 217 ~~~~~gg~~ 225 (453)
+..++++..
T Consensus 75 ~~~~~~~~~ 83 (169)
T PF00270_consen 75 VVLLHGGQS 83 (169)
T ss_dssp EEEESTTSC
T ss_pred ccccccccc
Confidence 998888765
|
Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A .... |
| >KOG0951|consensus | Back alignment and domain information |
|---|
Probab=99.60 E-value=6.7e-15 Score=152.64 Aligned_cols=321 Identities=15% Similarity=0.178 Sum_probs=199.5
Q ss_pred CCCCCCcccCCCCHHHHHHHHHHcCCeeccc-CCCccccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhc-CCcEE
Q psy9620 77 NFFHPSPSVLNRSPHEVQAFRDKHQMTLKGN-APNPITEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMS-GSNMV 154 (453)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~p~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~-g~d~l 154 (453)
.||...-+..|..+++.-.+...+.+..+.. .|.++.++..++....-....... |...+|+|.++++.+.+ +.+++
T Consensus 1085 ~~fi~lvSd~wl~s~~~~Pvsfr~l~lpek~p~pt~lld~~~~~~~~l~N~~~~~l-f~~~n~iqtqVf~~~y~~nd~v~ 1163 (1674)
T KOG0951|consen 1085 QYFIRLVSDRWLHSETVLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNPSFETL-FQDFNPIQTQVFTSLYNTNDNVL 1163 (1674)
T ss_pred ceEEEEeeccccCCCcccccchhhccCcccCCCCchhhhccccchhccCCcchhhh-ccccCCceEEEEeeeecccceEE
Confidence 3455555556666666666666666655554 555666665554332111111122 44569999999999885 66789
Q ss_pred EEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHH-HHHHhcCCCCceEEEEeCCccCCCC----
Q psy9620 155 GVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQE-VARDFGSSTYLRSTCVYGGASKGPQ---- 229 (453)
Q Consensus 155 i~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~-~~~~~~~~~~~~~~~~~gg~~~~~~---- 229 (453)
+.+|+|||||.++.++++. +....++++++|..+.+..++. +.+++....+..++.+.|..+.+..
T Consensus 1164 vga~~gsgkt~~ae~a~l~---------~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G~~~~~l~ge~s~~lkl~~~ 1234 (1674)
T KOG0951|consen 1164 VGAPNGSGKTACAELALLR---------PDTIGRAVYIAPLEEIADEQYRDWEKKFSKLLGLRIVKLTGETSLDLKLLQK 1234 (1674)
T ss_pred EecCCCCchhHHHHHHhcC---------CccceEEEEecchHHHHHHHHHHHHHhhccccCceEEecCCccccchHHhhh
Confidence 9999999999999888774 2356679999999999887765 4556777788888888887765543
Q ss_pred -----------------------------------CCceEEEEeccCcHHHHHHHHHhhccceEEEeccc----------
Q psy9620 230 -----------------------------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSL---------- 264 (453)
Q Consensus 230 -----------------------------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~---------- 264 (453)
...--+++| | +.++.++.++.-.+.+...
T Consensus 1235 ~~vii~tpe~~d~lq~iQ~v~l~i~d~lh~igg~~g~v~evi~S-~-----r~ia~q~~k~ir~v~ls~~lana~d~ig~ 1308 (1674)
T KOG0951|consen 1235 GQVIISTPEQWDLLQSIQQVDLFIVDELHLIGGVYGAVYEVICS-M-----RYIASQLEKKIRVVALSSSLANARDLIGA 1308 (1674)
T ss_pred cceEEechhHHHHHhhhhhcceEeeehhhhhcccCCceEEEEee-H-----HHHHHHHHhheeEEEeehhhccchhhccc
Confidence 112223333 2 2233333222111111000
Q ss_pred ---------ccccCccceeEEEEccccchhhhHHHHHHh----h--hcCCCCcEEEEEcchhHHHHHHHHHHhc------
Q psy9620 265 ---------TLSANHNIQQVVEVCAEHEKENKLFGLLND----I--SSKDENKTIIFAETKRKVDKITKSIQNY------ 323 (453)
Q Consensus 265 ---------~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~----~--~~~~~~~~lVF~~s~~~~~~l~~~L~~~------ 323 (453)
.........-.+..+...........+.+. + ...+.++.+||+++++.|..++..|-..
T Consensus 1309 s~~~v~Nf~p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~a~~~k~~~vf~p~rk~~~~~a~~~~~~s~~~~~ 1388 (1674)
T KOG0951|consen 1309 SSSGVFNFSPSVRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRHAGNRKPAIVFLPTRKHARLVAVDLVTFSHADEP 1388 (1674)
T ss_pred cccceeecCcccCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHHhcCCCCeEEEeccchhhhhhhhccchhhccCcH
Confidence 000011111122222222222233332221 1 1234679999999999998877665321
Q ss_pred ----------------CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEEE----cC------C
Q psy9620 324 ----------------GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVIN----FD------Y 377 (453)
Q Consensus 324 ----------------~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~----~d------~ 377 (453)
.+...+=|.+++..+.+-+...|..|.+.|+|...- .+|+-....-+|+. || .
T Consensus 1389 ~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i~v~v~s~~-~~~~~~~~~lVvvmgt~~ydg~e~~~~ 1467 (1674)
T KOG0951|consen 1389 DYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAIQVCVMSRD-CYGTKLKAHLVVVMGTQYYDGKEHSYE 1467 (1674)
T ss_pred HHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcEEEEEEEcc-cccccccceEEEEecceeecccccccc
Confidence 112222288999999999999999999999999887 88877754444442 33 2
Q ss_pred CCChhHHHHhhhcccCCCCcceEEEEEcCCChHHHHHHHH
Q psy9620 378 PNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDLID 417 (453)
Q Consensus 378 p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~ 417 (453)
+-++.+..|++|+|.| .|+|+++....+..++++++.
T Consensus 1468 ~y~i~~ll~m~G~a~~---~~k~vi~~~~~~k~yykkfl~ 1504 (1674)
T KOG0951|consen 1468 DYPIAELLQMVGLASG---AGKCVIMCHTPKKEYYKKFLY 1504 (1674)
T ss_pred cCchhHHHHHhhhhcC---CccEEEEecCchHHHHHHhcc
Confidence 3448999999999998 478999999998888887653
|
|
| >PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
Probab=99.57 E-value=6.1e-13 Score=143.94 Aligned_cols=134 Identities=14% Similarity=0.210 Sum_probs=95.2
Q ss_pred hHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCC--eEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCC
Q psy9620 287 KLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGW--AAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGL 364 (453)
Q Consensus 287 ~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~--~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gi 364 (453)
.+...+..+....++++|||++|.+..+.+++.|..... ....+.-+++...|..++++|+.++..||++|..+.+||
T Consensus 739 ~la~~i~~l~~~~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwEGV 818 (928)
T PRK08074 739 EVAAYIAKIAKATKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFWEGI 818 (928)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcccCcc
Confidence 344445455545577999999999999999999975422 122222234445688999999999899999999999999
Q ss_pred CCCCC--cEEEEcCCCC----C--------------------------hhHHHHhhhcccCCCCcceEEEEEcCC--ChH
Q psy9620 365 DVDDV--KFVINFDYPN----N--------------------------SEDYIHRIGRTGRSDNTGTSYTFFTQQ--NSR 410 (453)
Q Consensus 365 Dip~v--~~VI~~d~p~----s--------------------------~~~y~qr~GRagR~g~~g~~~~~~~~~--~~~ 410 (453)
|+|+- ++||...+|. + +..+.|-+||.-|...+--+++++++. ..+
T Consensus 819 D~pg~~l~~viI~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ilD~R~~~k~ 898 (928)
T PRK08074 819 DIPGDELSCLVIVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFVLDRRLTTTS 898 (928)
T ss_pred ccCCCceEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEEecCccccch
Confidence 99964 6788766553 1 223478899999997664456666654 455
Q ss_pred HHHHHHHHHH
Q psy9620 411 QAKDLIDVLT 420 (453)
Q Consensus 411 ~~~~l~~~l~ 420 (453)
+-+.+++.|-
T Consensus 899 Yg~~~l~sLP 908 (928)
T PRK08074 899 YGKYFLESLP 908 (928)
T ss_pred HHHHHHHhCC
Confidence 6677766654
|
|
| >COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.1e-13 Score=139.86 Aligned_cols=252 Identities=19% Similarity=0.202 Sum_probs=150.8
Q ss_pred CCCHHHHHHHHHHh----cC-CcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHh
Q psy9620 135 RPTPIQAQGWPIAM----SG-SNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDF 209 (453)
Q Consensus 135 ~~~~~Q~~~i~~i~----~g-~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~ 209 (453)
.++.+|..||..+. +| +.+|+++.||+|||.++ +.++..|.+.. .-.++|+|+.+++|..|.+..+..+
T Consensus 165 ~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTA-iaii~rL~r~~-----~~KRVLFLaDR~~Lv~QA~~af~~~ 238 (875)
T COG4096 165 GPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTA-IAIIDRLIKSG-----WVKRVLFLADRNALVDQAYGAFEDF 238 (875)
T ss_pred cchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeH-HHHHHHHHhcc-----hhheeeEEechHHHHHHHHHHHHHh
Confidence 68999999998655 34 34899999999999876 44555555532 3567999999999999999988887
Q ss_pred cCCCCceE-----------EEEeC----------CccCCCC-----------------------------CCceEEEEec
Q psy9620 210 GSSTYLRS-----------TCVYG----------GASKGPQ-----------------------------PDRQVLMWSA 239 (453)
Q Consensus 210 ~~~~~~~~-----------~~~~g----------g~~~~~~-----------------------------~~~q~v~~SA 239 (453)
........ .++.+ +...... -+.-++.++|
T Consensus 239 ~P~~~~~n~i~~~~~~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi~~~~~~I~dYFdA~~~gLTA 318 (875)
T COG4096 239 LPFGTKMNKIEDKKGDTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGIYSEWSSILDYFDAATQGLTA 318 (875)
T ss_pred CCCccceeeeecccCCcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhHHhhhHHHHHHHHHHHHhhcc
Confidence 54321111 00000 0000000 1112234488
Q ss_pred cCcHHHHHHHHHhh-ccce--------------------EEEe--cccccccC----------ccc---eeEEEEcc---
Q psy9620 240 TWPREVQKLAEDFL-DSYI--------------------QINI--GSLTLSAN----------HNI---QQVVEVCA--- 280 (453)
Q Consensus 240 T~~~~~~~~~~~~~-~~~~--------------------~~~~--~~~~~~~~----------~~i---~~~~~~~~--- 280 (453)
|+...+....-.|+ ..|+ .+.. ...+.... ..+ .+.+....
T Consensus 319 TP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~g~~i~~dd~~~~~~d~dr 398 (875)
T COG4096 319 TPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQGEAIDEDDQNFEARDFDR 398 (875)
T ss_pred CcccccccccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccchhhhhhccccCcccccccccccch
Confidence 87653332222222 1111 1111 00000000 000 00000000
Q ss_pred ---ccchhhhHHHHHHhhhcC-----CCCcEEEEEcchhHHHHHHHHHHhc-----CCeEEEEcCCCCHHHHHHHHHHHh
Q psy9620 281 ---EHEKENKLFGLLNDISSK-----DENKTIIFAETKRKVDKITKSIQNY-----GWAAVGIHGDKSQQERDYVLKEFR 347 (453)
Q Consensus 281 ---~~~k~~~l~~ll~~~~~~-----~~~~~lVF~~s~~~~~~l~~~L~~~-----~~~~~~~h~~~~~~~r~~~~~~f~ 347 (453)
-......+...+.+.+.. .-.|+||||.+..+|+.+...|.+. +--+..+.++-. +-...++.|.
T Consensus 399 ~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~~--~~q~~Id~f~ 476 (875)
T COG4096 399 TLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDAE--QAQALIDNFI 476 (875)
T ss_pred hccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccch--hhHHHHHHHH
Confidence 001112223333333221 1469999999999999999999875 334667777543 3334455555
Q ss_pred c--CCCcEEEEeccCccCCCCCCCcEEEEcCCCCChhHHHHhhhcccCC
Q psy9620 348 N--GRAGILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRS 394 (453)
Q Consensus 348 ~--g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~ 394 (453)
. .-.+|.|+.+++..|||+|.|.+++.+..-.|..-|.||+||.-|.
T Consensus 477 ~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl 525 (875)
T COG4096 477 DKEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRL 525 (875)
T ss_pred hcCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCcccc
Confidence 4 3467889999999999999999999999999999999999999886
|
|
| >PRK12902 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.7e-12 Score=133.68 Aligned_cols=82 Identities=24% Similarity=0.230 Sum_probs=69.4
Q ss_pred CCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhcC
Q psy9620 132 GFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGS 211 (453)
Q Consensus 132 g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~~ 211 (453)
|. .|+++|.-.--.+..|+ |+.+.||-|||+++.+|++..... |..|-||+++..||..-++++..+..
T Consensus 83 G~-r~ydVQliGgl~Lh~G~--IAEM~TGEGKTL~atlpaylnAL~--------GkgVhVVTvNdYLA~RDae~m~~vy~ 151 (939)
T PRK12902 83 GM-RHFDVQLIGGMVLHEGQ--IAEMKTGEGKTLVATLPSYLNALT--------GKGVHVVTVNDYLARRDAEWMGQVHR 151 (939)
T ss_pred CC-CcchhHHHhhhhhcCCc--eeeecCCCChhHHHHHHHHHHhhc--------CCCeEEEeCCHHHHHhHHHHHHHHHH
Confidence 55 78999988777777776 899999999999999999866543 45599999999999999999999988
Q ss_pred CCCceEEEEeCCc
Q psy9620 212 STYLRSTCVYGGA 224 (453)
Q Consensus 212 ~~~~~~~~~~gg~ 224 (453)
.+++.+.++..+.
T Consensus 152 ~LGLtvg~i~~~~ 164 (939)
T PRK12902 152 FLGLSVGLIQQDM 164 (939)
T ss_pred HhCCeEEEECCCC
Confidence 8899998886654
|
|
| >COG4889 Predicted helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=2e-13 Score=137.29 Aligned_cols=123 Identities=21% Similarity=0.305 Sum_probs=91.8
Q ss_pred cEEEEEcchhHHHHHHHHHHh-------------cCCe--EEEEcCCCCHHHHHHHHHH---HhcCCCcEEEEeccCccC
Q psy9620 302 KTIIFAETKRKVDKITKSIQN-------------YGWA--AVGIHGDKSQQERDYVLKE---FRNGRAGILVATDVAARG 363 (453)
Q Consensus 302 ~~lVF~~s~~~~~~l~~~L~~-------------~~~~--~~~~h~~~~~~~r~~~~~~---f~~g~~~vLvaT~~~~~G 363 (453)
++|-||.+.++...+++.+.. .++. +..+.|.|...+|...+.. |...+++||---..+++|
T Consensus 462 RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSEG 541 (1518)
T COG4889 462 RAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSEG 541 (1518)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchheeeccchhhhcC
Confidence 789999999888777766643 1333 4455688999999554443 456789999999999999
Q ss_pred CCCCCCcEEEEcCCCCChhHHHHhhhcccCCC--Cc-ceEEEEEc-------------CCChHHHHHHHHHHHhcCC
Q psy9620 364 LDVDDVKFVINFDYPNNSEDYIHRIGRTGRSD--NT-GTSYTFFT-------------QQNSRQAKDLIDVLTESNH 424 (453)
Q Consensus 364 iDip~v~~VI~~d~p~s~~~y~qr~GRagR~g--~~-g~~~~~~~-------------~~~~~~~~~l~~~l~~~~~ 424 (453)
+|+|..+.||.+|+..++.+.+|.+||+.|-. ++ |..|+=+. ..+...+.++++.|+.+..
T Consensus 542 VDVPaLDsViFf~pr~smVDIVQaVGRVMRKa~gK~yGYIILPIalpegi~p~~~l~~n~nFk~VWqVlnALRShD~ 618 (1518)
T COG4889 542 VDVPALDSVIFFDPRSSMVDIVQAVGRVMRKAKGKKYGYIILPIALPEGIKPLDELVNNTNFKNVWQVLKALRSHDE 618 (1518)
T ss_pred CCccccceEEEecCchhHHHHHHHHHHHHHhCcCCccceEEEEeccCCCCCchHHHhcCccHHHHHHHHHHHHhcCH
Confidence 99999999999999999999999999999962 22 43333221 2345567777777776655
|
|
| >TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4 | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.2e-11 Score=123.10 Aligned_cols=130 Identities=15% Similarity=0.112 Sum_probs=89.5
Q ss_pred HHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhc----CCCcEEEEeccCccC
Q psy9620 288 LFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRN----GRAGILVATDVAARG 363 (453)
Q Consensus 288 l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~----g~~~vLvaT~~~~~G 363 (453)
+.+.+..+.....+.+||.+.|....+.+++.|...--..+.+.|+.+ .+...+++|+. +...||++|+.+.+|
T Consensus 458 ~~~~~~~~~~~~~G~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweG 535 (636)
T TIGR03117 458 VSLSTAAILRKAQGGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWTG 535 (636)
T ss_pred HHHHHHHHHHHcCCCEEEEechHHHHHHHHHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCccccc
Confidence 444444455556789999999999999999999764223344566432 45668888887 478999999999999
Q ss_pred CCC----------CCCcEEEEcCCCCC-------------------------hhHHHHhhhcccCCCCc--ceEEEEEcC
Q psy9620 364 LDV----------DDVKFVINFDYPNN-------------------------SEDYIHRIGRTGRSDNT--GTSYTFFTQ 406 (453)
Q Consensus 364 iDi----------p~v~~VI~~d~p~s-------------------------~~~y~qr~GRagR~g~~--g~~~~~~~~ 406 (453)
||+ ..+++||...+|.. ...+.|-+||.-|...+ --.++++++
T Consensus 536 vDv~~~~~~p~~G~~Ls~ViI~kLPF~~~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLIR~~~D~~~G~i~ilD~ 615 (636)
T TIGR03117 536 IDLTHKPVSPDKDNLLTDLIITCAPFGLNRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVRHPDMPQNRRIHMLDG 615 (636)
T ss_pred cccCCccCCCCCCCcccEEEEEeCCCCcCChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCceeecCCCcCceEEEEEeC
Confidence 999 34788988776621 22357899999998655 334445554
Q ss_pred C-ChHHHHHHHHHH
Q psy9620 407 Q-NSRQAKDLIDVL 419 (453)
Q Consensus 407 ~-~~~~~~~l~~~l 419 (453)
. ...+.+.+.+..
T Consensus 616 R~~~~yg~~~~~~~ 629 (636)
T TIGR03117 616 RIHWPYMESWQESV 629 (636)
T ss_pred CCCchhHHHHHHHH
Confidence 4 334444444443
|
Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome. |
| >KOG1123|consensus | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.9e-12 Score=123.24 Aligned_cols=244 Identities=20% Similarity=0.249 Sum_probs=149.5
Q ss_pred CCCCHHHHHHHHHHh-cC--CcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhc
Q psy9620 134 DRPTPIQAQGWPIAM-SG--SNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFG 210 (453)
Q Consensus 134 ~~~~~~Q~~~i~~i~-~g--~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~ 210 (453)
..++|+|...+..++ +| ++-||+.|.|+|||++-+-++. .+ ...+||||.+--.++||...+..++
T Consensus 301 t~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~-ti----------kK~clvLcts~VSVeQWkqQfk~ws 369 (776)
T KOG1123|consen 301 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAAC-TI----------KKSCLVLCTSAVSVEQWKQQFKQWS 369 (776)
T ss_pred cccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeee-ee----------cccEEEEecCccCHHHHHHHHHhhc
Confidence 478999999999988 33 5889999999999987644433 22 3459999999999999999999886
Q ss_pred CCCCceEEEEeCCccCCCCCCceE--------------------------------------------------------
Q psy9620 211 SSTYLRSTCVYGGASKGPQPDRQV-------------------------------------------------------- 234 (453)
Q Consensus 211 ~~~~~~~~~~~gg~~~~~~~~~q~-------------------------------------------------------- 234 (453)
.-..-.++....+.........-+
T Consensus 370 ti~d~~i~rFTsd~Ke~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~MFRRVlsiv~aH 449 (776)
T KOG1123|consen 370 TIQDDQICRFTSDAKERFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAKMFRRVLSIVQAH 449 (776)
T ss_pred ccCccceEEeeccccccCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHHHHHHHHHHHHHH
Confidence 444434443333333222222222
Q ss_pred --EEEeccCcHHHHHHHH-HhhccceEEEecccccccCc---cceeEEEEcc-----------------------ccchh
Q psy9620 235 --LMWSATWPREVQKLAE-DFLDSYIQINIGSLTLSANH---NIQQVVEVCA-----------------------EHEKE 285 (453)
Q Consensus 235 --v~~SAT~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---~i~~~~~~~~-----------------------~~~k~ 285 (453)
+.++||+-.+-.++.. .|+-.|......-.++.... .++..-.+|+ ...|
T Consensus 450 cKLGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~kr~lLyvMNP~K- 528 (776)
T KOG1123|consen 450 CKLGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLRENTRKRMLLYVMNPNK- 528 (776)
T ss_pred hhccceeEEeeccccccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHHhhhhhhhheeeecCcch-
Confidence 3344443221111100 00000000000000000000 0111111111 1112
Q ss_pred hhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhc-CCCcEEEEeccCccCC
Q psy9620 286 NKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRN-GRAGILVATDVAARGL 364 (453)
Q Consensus 286 ~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~-g~~~vLvaT~~~~~Gi 364 (453)
.+..++|-......+.++|||..+.-.....+-.|.+ .+++|..++.||..+++.|+. ..++.++.+.+....|
T Consensus 529 FraCqfLI~~HE~RgDKiIVFsDnvfALk~YAikl~K-----pfIYG~Tsq~ERm~ILqnFq~n~~vNTIFlSKVgDtSi 603 (776)
T KOG1123|consen 529 FRACQFLIKFHERRGDKIIVFSDNVFALKEYAIKLGK-----PFIYGPTSQNERMKILQNFQTNPKVNTIFLSKVGDTSI 603 (776)
T ss_pred hHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHcCC-----ceEECCCchhHHHHHHHhcccCCccceEEEeeccCccc
Confidence 2233333333344567999999887766666655532 367899999999999999995 5789999999999999
Q ss_pred CCCCCcEEEEcCCC-CChhHHHHhhhcccCC
Q psy9620 365 DVDDVKFVINFDYP-NNSEDYIHRIGRTGRS 394 (453)
Q Consensus 365 Dip~v~~VI~~d~p-~s~~~y~qr~GRagR~ 394 (453)
|+|..+++|+...- .|-.+=.||.||.-|+
T Consensus 604 DLPEAnvLIQISSH~GSRRQEAQRLGRILRA 634 (776)
T KOG1123|consen 604 DLPEANVLIQISSHGGSRRQEAQRLGRILRA 634 (776)
T ss_pred cCCcccEEEEEcccccchHHHHHHHHHHHHH
Confidence 99999999987654 4566778999988886
|
|
| >COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.2e-11 Score=128.64 Aligned_cols=137 Identities=19% Similarity=0.266 Sum_probs=94.4
Q ss_pred hhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCe-EEEEcCCCCHHHHHHHHHHHhcCCC-cEEEEeccCc
Q psy9620 284 KENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWA-AVGIHGDKSQQERDYVLKEFRNGRA-GILVATDVAA 361 (453)
Q Consensus 284 k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~-~~~~h~~~~~~~r~~~~~~f~~g~~-~vLvaT~~~~ 361 (453)
-...+...+..+....++++|||++|.+..+.+++.|...... ....++.. .+...++.|+...- .++|+|..++
T Consensus 463 ~~~~~~~~i~~~~~~~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~---~~~~~l~~f~~~~~~~~lv~~gsf~ 539 (654)
T COG1199 463 LLAKLAAYLREILKASPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGED---EREELLEKFKASGEGLILVGGGSFW 539 (654)
T ss_pred HHHHHHHHHHHHHhhcCCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCC---cHHHHHHHHHHhcCCeEEEeecccc
Confidence 3444555555565566779999999999999999999876552 33445543 44578888886655 8999999999
Q ss_pred cCCCCCCC--cEEEEcCCCC------------------------------ChhHHHHhhhcccCCCCcceEEEEEcCCC-
Q psy9620 362 RGLDVDDV--KFVINFDYPN------------------------------NSEDYIHRIGRTGRSDNTGTSYTFFTQQN- 408 (453)
Q Consensus 362 ~GiDip~v--~~VI~~d~p~------------------------------s~~~y~qr~GRagR~g~~g~~~~~~~~~~- 408 (453)
+|||+|+- ..||...+|. .+..+.|-+||+-|...+--.+++++..-
T Consensus 540 EGVD~~g~~l~~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivllD~R~~ 619 (654)
T COG1199 540 EGVDFPGDALRLVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLLDKRYA 619 (654)
T ss_pred CcccCCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEecccch
Confidence 99999965 5677766653 23345899999999865544555555532
Q ss_pred -hHHHHHHHHHHHhcC
Q psy9620 409 -SRQAKDLIDVLTESN 423 (453)
Q Consensus 409 -~~~~~~l~~~l~~~~ 423 (453)
.+.-+.+.+.|....
T Consensus 620 ~~~y~~~l~~~l~~~~ 635 (654)
T COG1199 620 TKRYGKLLLDSLPPFP 635 (654)
T ss_pred hhhHHHHHHHhCCCCc
Confidence 224455555554433
|
|
| >KOG0387|consensus | Back alignment and domain information |
|---|
Probab=99.40 E-value=4e-11 Score=120.30 Aligned_cols=125 Identities=20% Similarity=0.318 Sum_probs=106.6
Q ss_pred cchhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHH-hcCCeEEEEcCCCCHHHHHHHHHHHhcCCCc--EEEEec
Q psy9620 282 HEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQ-NYGWAAVGIHGDKSQQERDYVLKEFRNGRAG--ILVATD 358 (453)
Q Consensus 282 ~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~-~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~--vLvaT~ 358 (453)
.-|...+..++...... ..++|+|..++...+.|..+|. ..++..+.+.|..+...|..++++|.+++.- +|++|.
T Consensus 529 sGKm~vl~~ll~~W~kq-g~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTr 607 (923)
T KOG0387|consen 529 SGKMKVLAKLLKDWKKQ-GDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTTR 607 (923)
T ss_pred cchHHHHHHHHHHHhhC-CCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHHhhcCCCceEEEEEEec
Confidence 34556677777766544 5599999999999999999999 5899999999999999999999999987643 678899
Q ss_pred cCccCCCCCCCcEEEEcCCCCChhHHHHhhhcccCCCCcc--eEEEEEcCC
Q psy9620 359 VAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTG--TSYTFFTQQ 407 (453)
Q Consensus 359 ~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g--~~~~~~~~~ 407 (453)
+-.-|+++-..+.||.||+-+|+..=.|..-||-|.|++- .+|-|++..
T Consensus 608 vGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~g 658 (923)
T KOG0387|consen 608 VGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTAG 658 (923)
T ss_pred ccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEecCC
Confidence 9999999999999999999999999999999999998764 355556654
|
|
| >PRK12901 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.8e-11 Score=127.56 Aligned_cols=125 Identities=14% Similarity=0.214 Sum_probs=97.6
Q ss_pred ccchhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccC
Q psy9620 281 EHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVA 360 (453)
Q Consensus 281 ~~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~ 360 (453)
..+|...+++-+..+. ....|+||-+.|.+..+.|++.|...+++..++++... +++.-+-.-.--.-.|-|||+++
T Consensus 610 ~~eK~~Aii~ei~~~~-~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h--~~EAeIVA~AG~~GaVTIATNMA 686 (1112)
T PRK12901 610 KREKYNAVIEEITELS-EAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLH--QKEAEIVAEAGQPGTVTIATNMA 686 (1112)
T ss_pred HHHHHHHHHHHHHHHH-HCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccch--hhHHHHHHhcCCCCcEEEeccCc
Confidence 3445555555555443 35779999999999999999999999998777777533 44443333333356799999999
Q ss_pred ccCCCCC--------CCcEEEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcCCC
Q psy9620 361 ARGLDVD--------DVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQN 408 (453)
Q Consensus 361 ~~GiDip--------~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~ 408 (453)
+||.||. +=-+||-...+.|..--.|..||+||.|.+|.+..|++-+|
T Consensus 687 GRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSLED 742 (1112)
T PRK12901 687 GRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLED 742 (1112)
T ss_pred CCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEccc
Confidence 9999996 22389999999999999999999999999999999988665
|
|
| >PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ] | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.8e-11 Score=115.97 Aligned_cols=187 Identities=16% Similarity=0.223 Sum_probs=142.7
Q ss_pred CCceEEEEeccCcHHHHHHHHHhhccce---EEEeccc----ccccCccceeEEEEccc----cchhhhHHH----HHHh
Q psy9620 230 PDRQVLMWSATWPREVQKLAEDFLDSYI---QINIGSL----TLSANHNIQQVVEVCAE----HEKENKLFG----LLND 294 (453)
Q Consensus 230 ~~~q~v~~SAT~~~~~~~~~~~~~~~~~---~~~~~~~----~~~~~~~i~~~~~~~~~----~~k~~~l~~----ll~~ 294 (453)
.-+|+|++|+...+++..+....+.|.. .+..... -......+.|.+...+. .+...++.. ++-.
T Consensus 214 ~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s~~~~~d~Rf~yF~~~iLP~ 293 (442)
T PF06862_consen 214 YYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSSPADDPDARFKYFTKKILPQ 293 (442)
T ss_pred heeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCCcchhhhHHHHHHHHHHHHH
Confidence 4589999999999999999999887752 2211111 11334455666654332 112223322 3333
Q ss_pred hh-cCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCc--cCCCCCCCcE
Q psy9620 295 IS-SKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAA--RGLDVDDVKF 371 (453)
Q Consensus 295 ~~-~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~--~GiDip~v~~ 371 (453)
+. ......+|||++|.-+--.|.++|++.++....+|...++.+-..+-..|..|+.+||+.|.-+. +-..|.++.+
T Consensus 294 l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL~TER~HFfrRy~irGi~~ 373 (442)
T PF06862_consen 294 LKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKPILLYTERFHFFRRYRIRGIRH 373 (442)
T ss_pred hhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCceEEEEEhHHhhhhhceecCCcE
Confidence 34 44567999999999999999999999999999999999999999999999999999999999766 6788999999
Q ss_pred EEEcCCCCChhHHHHhhhcccCCC------CcceEEEEEcCCChHHHHHHH
Q psy9620 372 VINFDYPNNSEDYIHRIGRTGRSD------NTGTSYTFFTQQNSRQAKDLI 416 (453)
Q Consensus 372 VI~~d~p~s~~~y~qr~GRagR~g------~~g~~~~~~~~~~~~~~~~l~ 416 (453)
||.|.+|..+.-|...+.-..... ....|.++|+.-|.-.++.++
T Consensus 374 viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LErIV 424 (442)
T PF06862_consen 374 VIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALRLERIV 424 (442)
T ss_pred EEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecHhHHHHHHHHh
Confidence 999999999998877775444432 257899999998877777766
|
; GO: 0005634 nucleus |
| >KOG2340|consensus | Back alignment and domain information |
|---|
Probab=99.30 E-value=5.8e-11 Score=114.04 Aligned_cols=186 Identities=17% Similarity=0.218 Sum_probs=134.6
Q ss_pred CceEEEEeccCcHHHHHHHHHhhccceEE----------EecccccccCccceeEEEEccccchhhhHHHHHHhhhcC--
Q psy9620 231 DRQVLMWSATWPREVQKLAEDFLDSYIQI----------NIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSK-- 298 (453)
Q Consensus 231 ~~q~v~~SAT~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~-- 298 (453)
-+|+++||+-..+.+..+...++.|..-. .+........+.++.+...........++..++..|...
T Consensus 469 ~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si~~~~D~RFkyFv~~ImPq~~ 548 (698)
T KOG2340|consen 469 FRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSIIETPDARFKYFVDKIMPQLI 548 (698)
T ss_pred HHHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCcccCchHHHHHHHHhhchhhc
Confidence 47999999999888888888888764311 111222222233322222122233344555555555332
Q ss_pred --CCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCc--cCCCCCCCcEEEE
Q psy9620 299 --DENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAA--RGLDVDDVKFVIN 374 (453)
Q Consensus 299 --~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~--~GiDip~v~~VI~ 374 (453)
...-+|||+++.-+--++.++|.+..+....+|...++..-.++-+.|-.|+.+||+.|.-+. +-.+|.+|..||.
T Consensus 549 k~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER~hffrR~~ikGVk~vVf 628 (698)
T KOG2340|consen 549 KRTESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSVLLYTERAHFFRRYHIKGVKNVVF 628 (698)
T ss_pred ccccCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehhhhhhhhheecceeeEEE
Confidence 234579999999999999999999999999999999999999999999999999999999876 7789999999999
Q ss_pred cCCCCChhHH---HHhhhcccCCC----CcceEEEEEcCCChHHHHHHH
Q psy9620 375 FDYPNNSEDY---IHRIGRTGRSD----NTGTSYTFFTQQNSRQAKDLI 416 (453)
Q Consensus 375 ~d~p~s~~~y---~qr~GRagR~g----~~g~~~~~~~~~~~~~~~~l~ 416 (453)
|.+|.++.-| +.+.+|+.-.| ..-.|.++++.-|.-.+..++
T Consensus 629 YqpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~i~Le~iv 677 (698)
T KOG2340|consen 629 YQPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDRIRLENIV 677 (698)
T ss_pred ecCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeechhhHHHHHhh
Confidence 9999998766 56666654333 235788999987766665554
|
|
| >KOG0390|consensus | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.8e-10 Score=115.07 Aligned_cols=102 Identities=17% Similarity=0.311 Sum_probs=81.7
Q ss_pred cEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCC--c-EEEEeccCccCCCCCCCcEEEEcCCC
Q psy9620 302 KTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRA--G-ILVATDVAARGLDVDDVKFVINFDYP 378 (453)
Q Consensus 302 ~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~--~-vLvaT~~~~~GiDip~v~~VI~~d~p 378 (453)
++.+..|-+...+.+...+.-.|+.+..+||.|+..+|..+++.|.+-.. . .|.+|.+.+.||++-+.+.||.||..
T Consensus 597 ~~v~Isny~~tldl~e~~~~~~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~d 676 (776)
T KOG0390|consen 597 KSVLISNYTQTLDLFEQLCRWRGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPD 676 (776)
T ss_pred EEEEeccHHHHHHHHHHHHhhcCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCC
Confidence 33333344444455555555569999999999999999999999996443 3 55677888999999999999999999
Q ss_pred CChhHHHHhhhcccCCCCcceEEEE
Q psy9620 379 NNSEDYIHRIGRTGRSDNTGTSYTF 403 (453)
Q Consensus 379 ~s~~~y~qr~GRagR~g~~g~~~~~ 403 (453)
+|++.=.|.+.|+-|.|++-.|+++
T Consensus 677 WNPa~d~QAmaR~~RdGQKk~v~iY 701 (776)
T KOG0390|consen 677 WNPAVDQQAMARAWRDGQKKPVYIY 701 (776)
T ss_pred CCchhHHHHHHHhccCCCcceEEEE
Confidence 9999999999999999987665544
|
|
| >KOG0385|consensus | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.9e-10 Score=112.17 Aligned_cols=126 Identities=20% Similarity=0.309 Sum_probs=105.7
Q ss_pred cchhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCC---CcEEEEec
Q psy9620 282 HEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGR---AGILVATD 358 (453)
Q Consensus 282 ~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~---~~vLvaT~ 358 (453)
.-|...|..+|..+.. .+.++|||-.-....+.|-+++.-.++....+.|.++.++|...++.|.... .-.|++|.
T Consensus 470 SGKm~vLDkLL~~Lk~-~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTR 548 (971)
T KOG0385|consen 470 SGKMLVLDKLLPKLKE-QGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTR 548 (971)
T ss_pred CcceehHHHHHHHHHh-CCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEecc
Confidence 3455555556665543 4789999999999999999999889999999999999999999999998644 44789999
Q ss_pred cCccCCCCCCCcEEEEcCCCCChhHHHHhhhcccCCCCcce--EEEEEcCCC
Q psy9620 359 VAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGT--SYTFFTQQN 408 (453)
Q Consensus 359 ~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~--~~~~~~~~~ 408 (453)
+.+-|||+...+.||.||..+++..=+|..-||-|-|+.-. +|-|++++.
T Consensus 549 AGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLitent 600 (971)
T KOG0385|consen 549 AGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITENT 600 (971)
T ss_pred ccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccch
Confidence 99999999999999999999999999999999999987644 555666553
|
|
| >PRK14873 primosome assembly protein PriA; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=8.5e-10 Score=114.23 Aligned_cols=60 Identities=15% Similarity=0.165 Sum_probs=44.2
Q ss_pred EecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhcCCCCceEEEEeCCcc
Q psy9620 156 VAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGSSTYLRSTCVYGGAS 225 (453)
Q Consensus 156 ~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~ 225 (453)
.+.+|||||.+|+-.+-..+.. |..+|||+|...|+.|+.+.+++.+.. ..+..++++.+
T Consensus 166 ~~~~GSGKTevyl~~i~~~l~~--------Gk~vLvLvPEi~lt~q~~~rl~~~f~~--~~v~~lhS~l~ 225 (665)
T PRK14873 166 QALPGEDWARRLAAAAAATLRA--------GRGALVVVPDQRDVDRLEAALRALLGA--GDVAVLSAGLG 225 (665)
T ss_pred hcCCCCcHHHHHHHHHHHHHHc--------CCeEEEEecchhhHHHHHHHHHHHcCC--CcEEEECCCCC
Confidence 3446999999997766555543 556999999999999999999987531 34555555543
|
|
| >TIGR00604 rad3 DNA repair helicase (rad3) | Back alignment and domain information |
|---|
Probab=99.21 E-value=4.4e-09 Score=111.53 Aligned_cols=121 Identities=21% Similarity=0.313 Sum_probs=85.3
Q ss_pred hhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCC-------eEEEEcCCCCHHHHHHHHHHHhc----CCCcEE
Q psy9620 286 NKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGW-------AAVGIHGDKSQQERDYVLKEFRN----GRAGIL 354 (453)
Q Consensus 286 ~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~-------~~~~~h~~~~~~~r~~~~~~f~~----g~~~vL 354 (453)
..+...|..+.....+.+|||++|....+.+++.+...+. ..+++ ..-...++..++++|+. ++-.||
T Consensus 508 ~~l~~~i~~~~~~~pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~-E~~~~~~~~~~l~~f~~~~~~~~gavL 586 (705)
T TIGR00604 508 RNLGELLVEFSKIIPDGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFV-ETKDAQETSDALERYKQAVSEGRGAVL 586 (705)
T ss_pred HHHHHHHHHHhhcCCCcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEE-eCCCcchHHHHHHHHHHHHhcCCceEE
Confidence 3455555555555578999999999999999998875432 12222 22222578899999964 456799
Q ss_pred EEe--ccCccCCCCCC--CcEEEEcCCCC-Ch------------------------------hHHHHhhhcccCCCCcce
Q psy9620 355 VAT--DVAARGLDVDD--VKFVINFDYPN-NS------------------------------EDYIHRIGRTGRSDNTGT 399 (453)
Q Consensus 355 vaT--~~~~~GiDip~--v~~VI~~d~p~-s~------------------------------~~y~qr~GRagR~g~~g~ 399 (453)
+|+ ..+++|||+++ .+.||..++|. +. ....|-+||+-|...+=-
T Consensus 587 ~av~gGk~sEGIDf~~~~~r~ViivGlPf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~a~~~v~QaiGR~IR~~~D~G 666 (705)
T TIGR00604 587 LSVAGGKVSEGIDFCDDLGRAVIMVGIPYEYTESRILLARLEFLRDQYPIRENQDFYEFDAMRAVNQAIGRVIRHKDDYG 666 (705)
T ss_pred EEecCCcccCccccCCCCCcEEEEEccCCCCCCCHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHhCccccCcCceE
Confidence 999 88999999997 57899888875 11 112688999999966655
Q ss_pred EEEEEcCC
Q psy9620 400 SYTFFTQQ 407 (453)
Q Consensus 400 ~~~~~~~~ 407 (453)
+++++++.
T Consensus 667 ~iillD~R 674 (705)
T TIGR00604 667 SIVLLDKR 674 (705)
T ss_pred EEEEEehh
Confidence 66666543
|
All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >smart00487 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.8e-10 Score=100.19 Aligned_cols=126 Identities=42% Similarity=0.620 Sum_probs=94.7
Q ss_pred CCCCCCCHHHHHHHHHHhcC-CcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHh
Q psy9620 131 QGFDRPTPIQAQGWPIAMSG-SNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDF 209 (453)
Q Consensus 131 ~g~~~~~~~Q~~~i~~i~~g-~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~ 209 (453)
.++..++++|.++++.++.. ++++++++||+|||.+++.+++..+.... ...+||++|++.++.|+.+.+..+
T Consensus 4 ~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~------~~~~l~~~p~~~~~~~~~~~~~~~ 77 (201)
T smart00487 4 FGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGK------GKRVLVLVPTRELAEQWAEELKKL 77 (201)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccC------CCcEEEEeCCHHHHHHHHHHHHHH
Confidence 45779999999999999988 99999999999999999888888765432 346999999999999999998887
Q ss_pred cCCCCceEEEEeCCccC---------CC-C--------------------------------------------------
Q psy9620 210 GSSTYLRSTCVYGGASK---------GP-Q-------------------------------------------------- 229 (453)
Q Consensus 210 ~~~~~~~~~~~~gg~~~---------~~-~-------------------------------------------------- 229 (453)
............++... .. .
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~ 157 (201)
T smart00487 78 GPSLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEKLLKLL 157 (201)
T ss_pred hccCCeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHHHHHHhC
Confidence 64433122222222110 00 0
Q ss_pred -CCceEEEEeccCcHHHHHHHHHhhccceEEEec
Q psy9620 230 -PDRQVLMWSATWPREVQKLAEDFLDSYIQINIG 262 (453)
Q Consensus 230 -~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~ 262 (453)
...+++++|||++.+.......++.+.+.+...
T Consensus 158 ~~~~~~v~~saT~~~~~~~~~~~~~~~~~~~~~~ 191 (201)
T smart00487 158 PKNVQLLLLSATPPEEIENLLELFLNDPVFIDVG 191 (201)
T ss_pred CccceEEEEecCCchhHHHHHHHhcCCCEEEeCC
Confidence 368899999999988888888887766655544
|
|
| >TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3 | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.7e-09 Score=111.18 Aligned_cols=91 Identities=20% Similarity=0.249 Sum_probs=71.1
Q ss_pred EEEEEcchhHHHHHHHHHHhc------CCeEEEEcCCCCHHHHHHHHHHH----------------------hc----CC
Q psy9620 303 TIIFAETKRKVDKITKSIQNY------GWAAVGIHGDKSQQERDYVLKEF----------------------RN----GR 350 (453)
Q Consensus 303 ~lVF~~s~~~~~~l~~~L~~~------~~~~~~~h~~~~~~~r~~~~~~f----------------------~~----g~ 350 (453)
.||-+++++.+-.+++.|... .+.+.++|+......|..+++.+ .+ +.
T Consensus 759 GliR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~ 838 (1110)
T TIGR02562 759 GLIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNH 838 (1110)
T ss_pred EEEEEcCchHHHHHHHHHHhhccccCCceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCC
Confidence 478888899998888888754 23467889998887777666553 12 46
Q ss_pred CcEEEEeccCccCCCCCCCcEEEEcCCCCChhHHHHhhhcccCCCC
Q psy9620 351 AGILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDN 396 (453)
Q Consensus 351 ~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~ 396 (453)
..|+|+|++++.|+|+ +.+.+|-- |.++...+|++||+-|.+.
T Consensus 839 ~~i~v~Tqv~E~g~D~-dfd~~~~~--~~~~~sliQ~aGR~~R~~~ 881 (1110)
T TIGR02562 839 LFIVLATPVEEVGRDH-DYDWAIAD--PSSMRSIIQLAGRVNRHRL 881 (1110)
T ss_pred CeEEEEeeeEEEEecc-cCCeeeec--cCcHHHHHHHhhccccccc
Confidence 6899999999999999 67766653 5669999999999999853
|
The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc. |
| >KOG1000|consensus | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.6e-08 Score=95.44 Aligned_cols=105 Identities=15% Similarity=0.276 Sum_probs=90.7
Q ss_pred CCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcC-CCcE-EEEeccCccCCCCCCCcEEEEcC
Q psy9620 299 DENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNG-RAGI-LVATDVAARGLDVDDVKFVINFD 376 (453)
Q Consensus 299 ~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g-~~~v-LvaT~~~~~GiDip~v~~VI~~d 376 (453)
...|.+|||....-.+.+..++.+.++..+.+.|..+..+|....+.|... +++| +++-.++..||++...+.|++..
T Consensus 491 ~~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaE 570 (689)
T KOG1000|consen 491 PPRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAE 570 (689)
T ss_pred CCceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEE
Confidence 456999999999999999999999999999999999999999999999954 4554 34556788999999999999999
Q ss_pred CCCChhHHHHhhhcccCCCCcceEEEE
Q psy9620 377 YPNNSEDYIHRIGRTGRSDNTGTSYTF 403 (453)
Q Consensus 377 ~p~s~~~y~qr~GRagR~g~~g~~~~~ 403 (453)
+++++.-.+|.=-|+-|.|++..+.+.
T Consensus 571 L~wnPgvLlQAEDRaHRiGQkssV~v~ 597 (689)
T KOG1000|consen 571 LHWNPGVLLQAEDRAHRIGQKSSVFVQ 597 (689)
T ss_pred ecCCCceEEechhhhhhccccceeeEE
Confidence 999999888888888888877554433
|
|
| >KOG0384|consensus | Back alignment and domain information |
|---|
Probab=98.98 E-value=4.3e-09 Score=110.45 Aligned_cols=110 Identities=18% Similarity=0.324 Sum_probs=100.6
Q ss_pred CCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhc---CCCcEEEEeccCccCCCCCCCcEEEEc
Q psy9620 299 DENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRN---GRAGILVATDVAARGLDVDDVKFVINF 375 (453)
Q Consensus 299 ~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~---g~~~vLvaT~~~~~GiDip~v~~VI~~ 375 (453)
.+++||||-.-....+.|+++|...+++...|.|.+..+.|.++++.|.. ...-+|+||.+-+-|||+-..+.||.|
T Consensus 698 ~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLatADTVIIF 777 (1373)
T KOG0384|consen 698 GGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATADTVIIF 777 (1373)
T ss_pred CCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccccccccceEEEe
Confidence 46799999999999999999999999999999999999999999999984 456799999999999999999999999
Q ss_pred CCCCChhHHHHhhhcccCCCCcc--eEEEEEcCCC
Q psy9620 376 DYPNNSEDYIHRIGRTGRSDNTG--TSYTFFTQQN 408 (453)
Q Consensus 376 d~p~s~~~y~qr~GRagR~g~~g--~~~~~~~~~~ 408 (453)
|.-+|+..=+|..-||-|-|+.- .+|-|++.+.
T Consensus 778 DSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~T 812 (1373)
T KOG0384|consen 778 DSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNT 812 (1373)
T ss_pred CCCCCcchHHHHHHHHHhhcccceEEEEEEecCCc
Confidence 99999999999999999998764 4777787764
|
|
| >KOG0389|consensus | Back alignment and domain information |
|---|
Probab=98.94 E-value=3.8e-08 Score=99.22 Aligned_cols=126 Identities=22% Similarity=0.332 Sum_probs=107.0
Q ss_pred cchhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCC--CcEEEEecc
Q psy9620 282 HEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGR--AGILVATDV 359 (453)
Q Consensus 282 ~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~--~~vLvaT~~ 359 (453)
..|...|..+|..+.. ++.++|||-.--...+.|...|...++....+.|...-.+|..+++.|...+ .-+|++|.+
T Consensus 760 SgK~r~L~~LLp~~k~-~G~RVLiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKA 838 (941)
T KOG0389|consen 760 SGKCRKLKELLPKIKK-KGDRVLIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKA 838 (941)
T ss_pred hhhHhHHHHHHHHHhh-cCCEEEEeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeecc
Confidence 3466677777777654 3579999999999999999999999999999999999999999999998765 347899999
Q ss_pred CccCCCCCCCcEEEEcCCCCChhHHHHhhhcccCCCCc--ceEEEEEcCCC
Q psy9620 360 AARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNT--GTSYTFFTQQN 408 (453)
Q Consensus 360 ~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~--g~~~~~~~~~~ 408 (453)
-+-||++-..++||.+|...++-+=.|.--||-|.|+. -.++-|++...
T Consensus 839 GG~GINLt~An~VIihD~dFNP~dD~QAEDRcHRvGQtkpVtV~rLItk~T 889 (941)
T KOG0389|consen 839 GGFGINLTCANTVIIHDIDFNPYDDKQAEDRCHRVGQTKPVTVYRLITKST 889 (941)
T ss_pred CcceecccccceEEEeecCCCCcccchhHHHHHhhCCcceeEEEEEEecCc
Confidence 99999999999999999998888888888888888754 55677777654
|
|
| >KOG0392|consensus | Back alignment and domain information |
|---|
Probab=98.94 E-value=9.1e-09 Score=107.82 Aligned_cols=127 Identities=18% Similarity=0.299 Sum_probs=102.4
Q ss_pred cchhhhHHHHHHhhhc-------------CCCCcEEEEEcchhHHHHHHHHHHhcCC---eEEEEcCCCCHHHHHHHHHH
Q psy9620 282 HEKENKLFGLLNDISS-------------KDENKTIIFAETKRKVDKITKSIQNYGW---AAVGIHGDKSQQERDYVLKE 345 (453)
Q Consensus 282 ~~k~~~l~~ll~~~~~-------------~~~~~~lVF~~s~~~~~~l~~~L~~~~~---~~~~~h~~~~~~~r~~~~~~ 345 (453)
..|...|.++|.++-- -.+.++||||+-+...+.+.+.|.+.-. .-..+.|..++.+|.++.++
T Consensus 1309 spKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~ 1388 (1549)
T KOG0392|consen 1309 SPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIVER 1388 (1549)
T ss_pred chhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhhhcCceeEEEecCCCCcHHHHHHHHH
Confidence 3456666677765511 1246999999999999999999876533 23468999999999999999
Q ss_pred HhcC-CCcEE-EEeccCccCCCCCCCcEEEEcCCCCChhHHHHhhhcccCCCCcce--EEEEEcCCC
Q psy9620 346 FRNG-RAGIL-VATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGT--SYTFFTQQN 408 (453)
Q Consensus 346 f~~g-~~~vL-vaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~--~~~~~~~~~ 408 (453)
|.++ .++|| ++|.+-+-|+|+-..+.||+++-.+|+-.=+|.+-||-|-|++-. +|-+++...
T Consensus 1389 FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKrvVNVyRlItrGT 1455 (1549)
T KOG0392|consen 1389 FNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGT 1455 (1549)
T ss_pred hcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCceeeeeeeehhccc
Confidence 9998 67877 566799999999999999999999998888999999999987744 667777653
|
|
| >COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.87 E-value=3.1e-08 Score=102.32 Aligned_cols=124 Identities=16% Similarity=0.235 Sum_probs=88.0
Q ss_pred cchhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCc
Q psy9620 282 HEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAA 361 (453)
Q Consensus 282 ~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~ 361 (453)
..|...++.-+.... ....|+||-..+.+..+.+.+.|.+.+++...+...- .+++.-+-...--.-.|-|||++++
T Consensus 412 ~~K~~Aiv~~I~~~~-~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~--h~~EA~Iia~AG~~gaVTiATNMAG 488 (822)
T COG0653 412 EEKFKAIVEDIKERH-EKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKN--HAREAEIIAQAGQPGAVTIATNMAG 488 (822)
T ss_pred HHHHHHHHHHHHHHH-hcCCCEEEcCcceecchhHHHHHHhcCCCceeecccc--HHHHHHHHhhcCCCCcccccccccc
Confidence 344444444444432 3467999999999999999999999999887777643 3555555555544557889999999
Q ss_pred cCCCCCCCc-----------EEEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcCCC
Q psy9620 362 RGLDVDDVK-----------FVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQN 408 (453)
Q Consensus 362 ~GiDip~v~-----------~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~ 408 (453)
||-||.--. +||-..--.|-.-=-|..||+||.|.+|.+-.|++-+|
T Consensus 489 RGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDpG~S~F~lSleD 546 (822)
T COG0653 489 RGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDPGSSRFYLSLED 546 (822)
T ss_pred CCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCcchhhhhhhhHH
Confidence 999985222 34444333344334588999999999998887776543
|
|
| >PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein | Back alignment and domain information |
|---|
Probab=98.83 E-value=6.8e-07 Score=92.13 Aligned_cols=240 Identities=13% Similarity=0.161 Sum_probs=144.8
Q ss_pred cEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhcCC-----C-----C------c
Q psy9620 152 NMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGSS-----T-----Y------L 215 (453)
Q Consensus 152 d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~~~-----~-----~------~ 215 (453)
-.++.+|.|||||.+..-++-..+.. ...++|+|+..+.|+.++...++...-. . . -
T Consensus 51 V~vVRSpMGTGKTtaLi~wLk~~l~~-------~~~~VLvVShRrSL~~sL~~rf~~~~l~gFv~Y~d~~~~~i~~~~~~ 123 (824)
T PF02399_consen 51 VLVVRSPMGTGKTTALIRWLKDALKN-------PDKSVLVVSHRRSLTKSLAERFKKAGLSGFVNYLDSDDYIIDGRPYD 123 (824)
T ss_pred eEEEECCCCCCcHHHHHHHHHHhccC-------CCCeEEEEEhHHHHHHHHHHHHhhcCCCcceeeeccccccccccccC
Confidence 45788999999997654433332221 3556999999999999999988754210 0 0 0
Q ss_pred eEEEEeCCcc------CC-CC----------------------------------CCceEEEEeccCcHHHHHHHHHhhc
Q psy9620 216 RSTCVYGGAS------KG-PQ----------------------------------PDRQVLMWSATWPREVQKLAEDFLD 254 (453)
Q Consensus 216 ~~~~~~gg~~------~~-~~----------------------------------~~~q~v~~SAT~~~~~~~~~~~~~~ 254 (453)
+..+...... .. .+ ....+|++-|++.....++++.+..
T Consensus 124 rLivqIdSL~R~~~~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ln~~tvdFl~~~Rp 203 (824)
T PF02399_consen 124 RLIVQIDSLHRLDGSLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADLNDQTVDFLASCRP 203 (824)
T ss_pred eEEEEehhhhhcccccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCCCHHHHHHHHHhCC
Confidence 1111111000 00 00 5668889999999988888888654
Q ss_pred c-ceEEEecccccccCccceeEE----------------------------------EEccccchhhhHHHHHHhhhcCC
Q psy9620 255 S-YIQINIGSLTLSANHNIQQVV----------------------------------EVCAEHEKENKLFGLLNDISSKD 299 (453)
Q Consensus 255 ~-~~~~~~~~~~~~~~~~i~~~~----------------------------------~~~~~~~k~~~l~~ll~~~~~~~ 299 (453)
+ .+.+.+.......-..-.-.+ ......+....+..++..+. .
T Consensus 204 ~~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tF~~~L~~~L~--~ 281 (824)
T PF02399_consen 204 DENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDETTFFSELLARLN--A 281 (824)
T ss_pred CCcEEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccchhhHHHHHHHHHh--C
Confidence 3 233322221100000000000 00000112223333444442 3
Q ss_pred CCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCc--EEEEcCC
Q psy9620 300 ENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVK--FVINFDY 377 (453)
Q Consensus 300 ~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~--~VI~~d~ 377 (453)
++++.||+.|...++.++++.......+..+++..+.. .+.+ -++.+|++-|+++..|+++.+.. -|+-|=-
T Consensus 282 gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~---dv~~---W~~~~VviYT~~itvG~Sf~~~HF~~~f~yvk 355 (824)
T PF02399_consen 282 GKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLE---DVES---WKKYDVVIYTPVITVGLSFEEKHFDSMFAYVK 355 (824)
T ss_pred CCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCcc---cccc---ccceeEEEEeceEEEEeccchhhceEEEEEec
Confidence 56888999999999999999999889999998865554 2322 46789999999999999997543 2444422
Q ss_pred C----CChhHHHHhhhcccCCCCcceEEEEEcCC
Q psy9620 378 P----NNSEDYIHRIGRTGRSDNTGTSYTFFTQQ 407 (453)
Q Consensus 378 p----~s~~~y~qr~GRagR~g~~g~~~~~~~~~ 407 (453)
| .++.+..|++||+=.. .....+++++..
T Consensus 356 ~~~~gpd~~s~~Q~lgRvR~l-~~~ei~v~~d~~ 388 (824)
T PF02399_consen 356 PMSYGPDMVSVYQMLGRVRSL-LDNEIYVYIDAS 388 (824)
T ss_pred CCCCCCcHHHHHHHHHHHHhh-ccCeEEEEEecc
Confidence 3 3456789999997554 445667777654
|
It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication |
| >KOG1002|consensus | Back alignment and domain information |
|---|
Probab=98.80 E-value=3.5e-07 Score=87.81 Aligned_cols=126 Identities=21% Similarity=0.257 Sum_probs=97.3
Q ss_pred chhhhHHHHHHhhhcCC-CCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcC-CCcEE-EEecc
Q psy9620 283 EKENKLFGLLNDISSKD-ENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNG-RAGIL-VATDV 359 (453)
Q Consensus 283 ~k~~~l~~ll~~~~~~~-~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g-~~~vL-vaT~~ 359 (453)
.|...|.+-|..+.... ..+.|||..--...+.+...|.+.|+.++-+.|+|++..|..+++.|++. .+.|+ |+-.+
T Consensus 620 TKIEAL~EEl~~l~~rd~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkA 699 (791)
T KOG1002|consen 620 TKIEALVEELYFLRERDRTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKA 699 (791)
T ss_pred hHHHHHHHHHHHHHHcccchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEecc
Confidence 34455555444443322 34899999999999999999999999999999999999999999999976 45554 55566
Q ss_pred CccCCCCCCCcEEEEcCCCCChhHHHHhhhcccCCC--CcceEEEEEcCCC
Q psy9620 360 AARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSD--NTGTSYTFFTQQN 408 (453)
Q Consensus 360 ~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g--~~g~~~~~~~~~~ 408 (453)
-+.-+++-...+|+.+|+.++++.=.|..-|.-|.| ++-.++.|+-++.
T Consensus 700 GGVALNLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEns 750 (791)
T KOG1002|consen 700 GGVALNLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIENS 750 (791)
T ss_pred CceEeeechhceeEeecccccHHHHhhhhhhHHhhcCccceeEEEeehhcc
Confidence 667789999999999999999887777666666655 3556777776654
|
|
| >PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3 | Back alignment and domain information |
|---|
Probab=98.67 E-value=5.2e-08 Score=85.59 Aligned_cols=66 Identities=29% Similarity=0.355 Sum_probs=54.3
Q ss_pred CCCHHHHHHHHHHhc-------CCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHH
Q psy9620 135 RPTPIQAQGWPIAMS-------GSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVAR 207 (453)
Q Consensus 135 ~~~~~Q~~~i~~i~~-------g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~ 207 (453)
+|+++|.+++..+.. .+.+++.+|||||||.+++..+..... ++||++|+..|+.|+.+.+.
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~-----------~~l~~~p~~~l~~Q~~~~~~ 71 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR-----------KVLIVAPNISLLEQWYDEFD 71 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC-----------EEEEEESSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc-----------ceeEecCHHHHHHHHHHHHH
Confidence 589999999998873 588999999999999887754444332 59999999999999999997
Q ss_pred HhcC
Q psy9620 208 DFGS 211 (453)
Q Consensus 208 ~~~~ 211 (453)
.+..
T Consensus 72 ~~~~ 75 (184)
T PF04851_consen 72 DFGS 75 (184)
T ss_dssp HHST
T ss_pred Hhhh
Confidence 7753
|
1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B .... |
| >KOG0921|consensus | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.1e-07 Score=97.03 Aligned_cols=106 Identities=19% Similarity=0.393 Sum_probs=89.8
Q ss_pred CCcEEEEEcchhHHHHHHHHHHhc-------CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEE
Q psy9620 300 ENKTIIFAETKRKVDKITKSIQNY-------GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFV 372 (453)
Q Consensus 300 ~~~~lVF~~s~~~~~~l~~~L~~~-------~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~V 372 (453)
.+-++||.+-+...-.|..+|... .+.+..+|+.....+..++.+....|..++|+.|.+++.-|.|.++.+|
T Consensus 643 ~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~v 722 (1282)
T KOG0921|consen 643 DGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYV 722 (1282)
T ss_pred ccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhhhccCcccccccccccccceeeEeeeecceeEE
Confidence 467999999999999999998753 4678889999999999999999999999999999999999999998888
Q ss_pred EEcCCC------------------CChhHHHHhhhcccCCCCcceEEEEEcC
Q psy9620 373 INFDYP------------------NNSEDYIHRIGRTGRSDNTGTSYTFFTQ 406 (453)
Q Consensus 373 I~~d~p------------------~s~~~y~qr~GRagR~g~~g~~~~~~~~ 406 (453)
|..+.- .+.....||.||+||. .+|.|+.++..
T Consensus 723 id~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grv-R~G~~f~lcs~ 773 (1282)
T KOG0921|consen 723 IDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRV-RPGFCFHLCSR 773 (1282)
T ss_pred EeeeeeeeeeeccccceeeeeeecccccchHhhcccCcee-cccccccccHH
Confidence 854421 2345669999999998 78888888764
|
|
| >smart00489 DEXDc3 DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.3e-07 Score=87.37 Aligned_cols=74 Identities=20% Similarity=0.150 Sum_probs=58.4
Q ss_pred CCCHHHHHHHHH----HhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhc
Q psy9620 135 RPTPIQAQGWPI----AMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFG 210 (453)
Q Consensus 135 ~~~~~Q~~~i~~----i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~ 210 (453)
.|+|.|.+.+.. +.++.++++.||||+|||+++++|++.++...... ..+.+++|+++|..+.+|....++++.
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~--~~~~kvi~~t~T~~~~~q~i~~l~~~~ 85 (289)
T smart00489 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER--IQKIKLIYLSRTVSEIEKRLEELRKLM 85 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc--ccccceeEEeccHHHHHHHHHHHHhcc
Confidence 579999995554 44788999999999999999999999876643221 023469999999999999888887763
|
|
| >smart00488 DEXDc2 DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.3e-07 Score=87.37 Aligned_cols=74 Identities=20% Similarity=0.150 Sum_probs=58.4
Q ss_pred CCCHHHHHHHHH----HhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhc
Q psy9620 135 RPTPIQAQGWPI----AMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFG 210 (453)
Q Consensus 135 ~~~~~Q~~~i~~----i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~ 210 (453)
.|+|.|.+.+.. +.++.++++.||||+|||+++++|++.++...... ..+.+++|+++|..+.+|....++++.
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~--~~~~kvi~~t~T~~~~~q~i~~l~~~~ 85 (289)
T smart00488 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER--IQKIKLIYLSRTVSEIEKRLEELRKLM 85 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc--ccccceeEEeccHHHHHHHHHHHHhcc
Confidence 579999995554 44788999999999999999999999876643221 023469999999999999888887763
|
|
| >PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.6e-06 Score=89.97 Aligned_cols=129 Identities=22% Similarity=0.393 Sum_probs=89.4
Q ss_pred hhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhc-CCeEEEEcCCCCHHHHHHHHHHHh----cCCCcEEEEeccC
Q psy9620 286 NKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNY-GWAAVGIHGDKSQQERDYVLKEFR----NGRAGILVATDVA 360 (453)
Q Consensus 286 ~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~-~~~~~~~h~~~~~~~r~~~~~~f~----~g~~~vLvaT~~~ 360 (453)
..+.+.+..+.. ..+.+|||++|....+.++..|... +.. +..++. ..+..+++.|+ .++..||++|..+
T Consensus 521 ~~~~~~i~~l~~-~~gg~LVlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~---~~~~~ll~~f~~~~~~~~~~VL~g~~sf 595 (697)
T PRK11747 521 AEMAEFLPELLE-KHKGSLVLFASRRQMQKVADLLPRDLRLM-LLVQGD---QPRQRLLEKHKKRVDEGEGSVLFGLQSF 595 (697)
T ss_pred HHHHHHHHHHHh-cCCCEEEEeCcHHHHHHHHHHHHHhcCCc-EEEeCC---chHHHHHHHHHHHhccCCCeEEEEeccc
Confidence 345555555555 4557999999999999999998753 333 344554 25677887776 4678899999999
Q ss_pred ccCCCCCC--CcEEEEcCCCC----C--------------------------hhHHHHhhhcccCCCCcceEEEEEcCC-
Q psy9620 361 ARGLDVDD--VKFVINFDYPN----N--------------------------SEDYIHRIGRTGRSDNTGTSYTFFTQQ- 407 (453)
Q Consensus 361 ~~GiDip~--v~~VI~~d~p~----s--------------------------~~~y~qr~GRagR~g~~g~~~~~~~~~- 407 (453)
.+|||+|+ +++||...+|. + +..+.|-+||.-|...+--+++++++.
T Consensus 596 ~EGVD~pGd~l~~vII~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G~i~ilD~R~ 675 (697)
T PRK11747 596 AEGLDLPGDYLTQVIITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGRVTILDRRL 675 (697)
T ss_pred cccccCCCCceEEEEEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCceEEEEEEcccc
Confidence 99999986 67888877653 1 112368899999986554455555654
Q ss_pred -ChHHHHHHHHHH
Q psy9620 408 -NSRQAKDLIDVL 419 (453)
Q Consensus 408 -~~~~~~~l~~~l 419 (453)
...+-+.+++.|
T Consensus 676 ~~~~Yg~~~l~sL 688 (697)
T PRK11747 676 LTKRYGKRLLDAL 688 (697)
T ss_pred cchhHHHHHHHhC
Confidence 344556665554
|
|
| >cd00046 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=98.51 E-value=6e-07 Score=74.64 Aligned_cols=70 Identities=40% Similarity=0.534 Sum_probs=54.3
Q ss_pred CcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhcCCCCceEEEEeCCccCC
Q psy9620 151 SNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGSSTYLRSTCVYGGASKG 227 (453)
Q Consensus 151 ~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~ 227 (453)
+++++.++||+|||.+++..+...... ...+++||++|++.|+.|+.+.+...... .+.+..+.+.....
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~------~~~~~~lv~~p~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 70 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDS------LKGGQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTSIK 70 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhc------ccCCCEEEEcCcHHHHHHHHHHHHHHhhC-CcEEEEEecCcchh
Confidence 468999999999999988877766543 13457999999999999999988888654 56666666654443
|
A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region. |
| >PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A | Back alignment and domain information |
|---|
Probab=98.44 E-value=4.6e-07 Score=78.24 Aligned_cols=108 Identities=20% Similarity=0.313 Sum_probs=73.8
Q ss_pred CCCCcEEEEEcchhHHHHHHHHHHhcCC--eEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEec--cCccCCCCCC--CcE
Q psy9620 298 KDENKTIIFAETKRKVDKITKSIQNYGW--AAVGIHGDKSQQERDYVLKEFRNGRAGILVATD--VAARGLDVDD--VKF 371 (453)
Q Consensus 298 ~~~~~~lVF~~s~~~~~~l~~~L~~~~~--~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~--~~~~GiDip~--v~~ 371 (453)
..++.+|||++|....+.+.+.+..... ....+.. ...++..+++.|+.++..||+|+. .+.+|||+++ ++.
T Consensus 7 ~~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~r~ 84 (167)
T PF13307_consen 7 AVPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGDLLRA 84 (167)
T ss_dssp CCSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECESEEE
T ss_pred cCCCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCCchhhe
Confidence 3468999999999999999999876531 1122222 355888999999999999999999 9999999996 667
Q ss_pred EEEcCCCCC-h-----------------------------hHHHHhhhcccCCCCcceEEEEEcCC
Q psy9620 372 VINFDYPNN-S-----------------------------EDYIHRIGRTGRSDNTGTSYTFFTQQ 407 (453)
Q Consensus 372 VI~~d~p~s-~-----------------------------~~y~qr~GRagR~g~~g~~~~~~~~~ 407 (453)
||...+|.. + ....|-+||+-|..++--+++++++.
T Consensus 85 vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~llD~R 150 (167)
T PF13307_consen 85 VIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILLDSR 150 (167)
T ss_dssp EEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEESGG
T ss_pred eeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEEcCc
Confidence 998887731 1 11268899999997665555565553
|
|
| >KOG4439|consensus | Back alignment and domain information |
|---|
Probab=98.35 E-value=2.9e-05 Score=78.06 Aligned_cols=121 Identities=19% Similarity=0.263 Sum_probs=96.2
Q ss_pred ccchhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhc--CCCcEE-EEe
Q psy9620 281 EHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRN--GRAGIL-VAT 357 (453)
Q Consensus 281 ~~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~--g~~~vL-vaT 357 (453)
...|...+++.++.+......+++|...-.....-+...|...++....+||.....+|..+++.|.. |..+|+ +.-
T Consensus 727 ~S~Ki~~~l~~le~i~~~skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSL 806 (901)
T KOG4439|consen 727 PSCKIAMVLEILETILTSSKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSL 806 (901)
T ss_pred chhHHHHHHHHHHHHhhcccceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEE
Confidence 44566777777777755555677776666666677778899999999999999999999999999973 445555 444
Q ss_pred ccCccCCCCCCCcEEEEcCCCCChhHHHHhhhcccCCCCcceEE
Q psy9620 358 DVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSY 401 (453)
Q Consensus 358 ~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~ 401 (453)
.+-+.||++-..+|+|..|+-+++.-=.|.+-|.=|.|++-.++
T Consensus 807 tAGGVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~GQkK~V~ 850 (901)
T KOG4439|consen 807 TAGGVGLNLIGANHLILVDLHWNPALEQQACDRIYRMGQKKDVF 850 (901)
T ss_pred ccCcceeeecccceEEEEecccCHHHHHHHHHHHHHhcccCceE
Confidence 66678999999999999999999998889899988988664433
|
|
| >KOG0386|consensus | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.8e-05 Score=82.36 Aligned_cols=122 Identities=19% Similarity=0.247 Sum_probs=101.1
Q ss_pred hhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCC---CcEEEEeccC
Q psy9620 284 KENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGR---AGILVATDVA 360 (453)
Q Consensus 284 k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~---~~vLvaT~~~ 360 (453)
|...|..+|-.+. ..++++|.||.-..-.+.+..+|.-.++.-..+.|.....+|...++.|..-. ..+|.+|.+.
T Consensus 711 KfELLDRiLPKLk-atgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~Fllstrag 789 (1157)
T KOG0386|consen 711 KFELLDRILPKLK-ATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTRAG 789 (1157)
T ss_pred HHHHHHhhhHHHH-hcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCCceeeeeeeeccc
Confidence 3333333444432 34789999999999999999999999999999999999999999999998644 4588999999
Q ss_pred ccCCCCCCCcEEEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcC
Q psy9620 361 ARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQ 406 (453)
Q Consensus 361 ~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~ 406 (453)
..|+|+.-.+.||.||.-+++..+.|+--||-|.|+.-.+-++...
T Consensus 790 glglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~ 835 (1157)
T KOG0386|consen 790 GLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLI 835 (1157)
T ss_pred ccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeee
Confidence 9999999999999999999999999999999998876555555443
|
|
| >PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=8.1e-06 Score=86.33 Aligned_cols=65 Identities=31% Similarity=0.365 Sum_probs=53.2
Q ss_pred CCCCCCHHHHHHHHHHh---cC------CcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHH
Q psy9620 132 GFDRPTPIQAQGWPIAM---SG------SNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQI 202 (453)
Q Consensus 132 g~~~~~~~Q~~~i~~i~---~g------~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~ 202 (453)
|| ++++-|.+.+..+. ++ +.+++.|+||+|||++|++|++..... .+.++||-+.|+.|-+|+
T Consensus 23 ~~-e~R~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTGtGKTlaYLlPai~~A~~-------~~k~vVIST~T~~LQeQL 94 (697)
T PRK11747 23 GF-IPRAGQRQMIAEVAKTLAGEYLKDGRILVIEAGTGVGKTLSYLLAGIPIARA-------EKKKLVISTATVALQEQL 94 (697)
T ss_pred CC-CcCHHHHHHHHHHHHHHhcccccccceEEEECCCCcchhHHHHHHHHHHHHH-------cCCeEEEEcCCHHHHHHH
Confidence 56 89999999776654 33 668899999999999999999876554 345699999999999998
Q ss_pred HH
Q psy9620 203 QE 204 (453)
Q Consensus 203 ~~ 204 (453)
..
T Consensus 95 ~~ 96 (697)
T PRK11747 95 VS 96 (697)
T ss_pred Hh
Confidence 53
|
|
| >KOG0952|consensus | Back alignment and domain information |
|---|
Probab=98.10 E-value=1.1e-06 Score=91.74 Aligned_cols=89 Identities=21% Similarity=0.237 Sum_probs=71.2
Q ss_pred CCCCCHHHHHHHHHHh-cCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhcC
Q psy9620 133 FDRPTPIQAQGWPIAM-SGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGS 211 (453)
Q Consensus 133 ~~~~~~~Q~~~i~~i~-~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~~ 211 (453)
+..+.|+|.+.+..+. ...++++.+|||+|||++|.+.+...+... .+.++++++|.++|+..-.+.+.+...
T Consensus 925 ~~~fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~------p~~kvvyIap~kalvker~~Dw~~r~~ 998 (1230)
T KOG0952|consen 925 YKYFNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSYY------PGSKVVYIAPDKALVKERSDDWSKRDE 998 (1230)
T ss_pred hcccCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhccC------CCccEEEEcCCchhhcccccchhhhcc
Confidence 4467889998887665 467889999999999999999988776654 356799999999999988777776655
Q ss_pred CCCceEEEEeCCccCC
Q psy9620 212 STYLRSTCVYGGASKG 227 (453)
Q Consensus 212 ~~~~~~~~~~gg~~~~ 227 (453)
..++++..+.|....+
T Consensus 999 ~~g~k~ie~tgd~~pd 1014 (1230)
T KOG0952|consen 999 LPGIKVIELTGDVTPD 1014 (1230)
T ss_pred cCCceeEeccCccCCC
Confidence 5588888887776655
|
|
| >KOG0391|consensus | Back alignment and domain information |
|---|
Probab=98.05 E-value=4.5e-05 Score=80.52 Aligned_cols=143 Identities=22% Similarity=0.394 Sum_probs=110.1
Q ss_pred cchhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCC--CcEEEEecc
Q psy9620 282 HEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGR--AGILVATDV 359 (453)
Q Consensus 282 ~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~--~~vLvaT~~ 359 (453)
.-|...|.-+|..+.. .+.++|||..-.+..+.|..+|.-+|+.-..+.|...-++|...+++|...+ ...|++|..
T Consensus 1259 cGKLQtLAiLLqQLk~-eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrS 1337 (1958)
T KOG0391|consen 1259 CGKLQTLAILLQQLKS-EGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRS 1337 (1958)
T ss_pred cchHHHHHHHHHHHHh-cCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccC
Confidence 4577778888887755 4679999999999999999999999999999999999999999999999765 357789999
Q ss_pred CccCCCCCCCcEEEEcCCCCChh------HHHHhhhcccCCCCcceEEEEEcCCChHHHHHHHHHHHhcCCCCChHHHHH
Q psy9620 360 AARGLDVDDVKFVINFDYPNNSE------DYIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDLIDVLTESNHPVDPKLSAL 433 (453)
Q Consensus 360 ~~~GiDip~v~~VI~~d~p~s~~------~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~v~~~l~~~ 433 (453)
-..|||+-..+.||+||..+|+. +..||||++ ++-+.|-|+++...+ -++|++++++ ..|.++
T Consensus 1338 ggvGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqt----RDVHIYRLISe~TIE-----eniLkkanqK--r~L~ev 1406 (1958)
T KOG0391|consen 1338 GGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQT----RDVHIYRLISERTIE-----ENILKKANQK--RMLDEV 1406 (1958)
T ss_pred CccccccccCceEEEecCCCCchhhhHHHHHHHhhcCc----cceEEEEeeccchHH-----HHHHhhhhHH--HHHHHH
Confidence 99999999999999999988764 455666554 345677777765321 1344445442 344555
Q ss_pred Hhh
Q psy9620 434 ASR 436 (453)
Q Consensus 434 ~~~ 436 (453)
+-+
T Consensus 1407 aiq 1409 (1958)
T KOG0391|consen 1407 AIQ 1409 (1958)
T ss_pred hhc
Confidence 544
|
|
| >COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.98 E-value=9.4e-05 Score=81.30 Aligned_cols=125 Identities=21% Similarity=0.313 Sum_probs=103.7
Q ss_pred chhhhHHHHH-HhhhcCCCC--cEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcC--CCcEEEEe
Q psy9620 283 EKENKLFGLL-NDISSKDEN--KTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNG--RAGILVAT 357 (453)
Q Consensus 283 ~k~~~l~~ll-~~~~~~~~~--~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g--~~~vLvaT 357 (453)
.|...+.+++ ..+.. ... ++|||++.....+.+...|...++....++|.++..+|..++++|.++ ..-++++|
T Consensus 692 ~k~~~l~~ll~~~~~~-~~~~~kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~ 770 (866)
T COG0553 692 GKLQALDELLLDKLLE-EGHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSL 770 (866)
T ss_pred hHHHHHHHHHHHHHHh-hcccccEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEe
Confidence 3455566666 44433 344 899999999999999999999998899999999999999999999986 45567777
Q ss_pred ccCccCCCCCCCcEEEEcCCCCChhHHHHhhhcccCCCCcce--EEEEEcCCC
Q psy9620 358 DVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGT--SYTFFTQQN 408 (453)
Q Consensus 358 ~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~--~~~~~~~~~ 408 (453)
.+...|+++-..++||+||..+++....|...|+-|.|++.. ++-+++.+.
T Consensus 771 kagg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v~r~i~~~t 823 (866)
T COG0553 771 KAGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVKVYRLITRGT 823 (866)
T ss_pred cccccceeecccceEEEeccccChHHHHHHHHHHHHhcCcceeEEEEeecCCc
Confidence 899999999999999999999999999999999999876644 455555543
|
|
| >KOG0388|consensus | Back alignment and domain information |
|---|
Probab=97.92 E-value=6.5e-05 Score=75.58 Aligned_cols=127 Identities=18% Similarity=0.317 Sum_probs=109.2
Q ss_pred ccchhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCC-cEEEEecc
Q psy9620 281 EHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRA-GILVATDV 359 (453)
Q Consensus 281 ~~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~-~vLvaT~~ 359 (453)
+..|...|.++|..+.. .+.++|+|+.--+..+.+.++|.-.++.-..+.|.....+|..+..+|...++ -+|++|.+
T Consensus 1026 dSgKL~~LDeLL~kLka-egHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRA 1104 (1185)
T KOG0388|consen 1026 DSGKLVVLDELLPKLKA-EGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRA 1104 (1185)
T ss_pred cccceeeHHHHHHHhhc-CCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEeccc
Confidence 45677778888877754 47799999999999999999999999999999999999999999999997554 46789999
Q ss_pred CccCCCCCCCcEEEEcCCCCChhHHHHhhhcccCCCCc--ceEEEEEcCCC
Q psy9620 360 AARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNT--GTSYTFFTQQN 408 (453)
Q Consensus 360 ~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~--g~~~~~~~~~~ 408 (453)
-+-||++.+.+.||+||..+++.-=.|..-||-|.|+. -.+|-+++...
T Consensus 1105 GGLGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rgT 1155 (1185)
T KOG0388|consen 1105 GGLGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITRGT 1155 (1185)
T ss_pred CcccccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeeccccc
Confidence 99999999999999999999999889999999998865 34666666554
|
|
| >PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain | Back alignment and domain information |
|---|
Probab=97.82 E-value=4.3e-05 Score=62.66 Aligned_cols=53 Identities=30% Similarity=0.335 Sum_probs=36.4
Q ss_pred CCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHh
Q psy9620 150 GSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDF 209 (453)
Q Consensus 150 g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~ 209 (453)
|+-.++...+|+|||--.+--++..... .+.++|||.|||.++..+.+.++..
T Consensus 4 g~~~~~d~hpGaGKTr~vlp~~~~~~i~-------~~~rvLvL~PTRvva~em~~aL~~~ 56 (148)
T PF07652_consen 4 GELTVLDLHPGAGKTRRVLPEIVREAIK-------RRLRVLVLAPTRVVAEEMYEALKGL 56 (148)
T ss_dssp TEEEEEE--TTSSTTTTHHHHHHHHHHH-------TT--EEEEESSHHHHHHHHHHTTTS
T ss_pred CceeEEecCCCCCCcccccHHHHHHHHH-------ccCeEEEecccHHHHHHHHHHHhcC
Confidence 4456788999999997654444433332 3567999999999999999888754
|
The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A .... |
| >PF13245 AAA_19: Part of AAA domain | Back alignment and domain information |
|---|
Probab=97.80 E-value=9e-05 Score=54.51 Aligned_cols=60 Identities=32% Similarity=0.387 Sum_probs=39.5
Q ss_pred HHHHHhcCCc-EEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHH
Q psy9620 143 GWPIAMSGSN-MVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVA 206 (453)
Q Consensus 143 ~i~~i~~g~d-~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~ 206 (453)
++...+++.. +++.+|.|||||.+.+-.+...+..... .+.++||++||+..+..+.+.+
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~----~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTTLAARIAELLAARAD----PGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHhcC----CCCeEEEECCCHHHHHHHHHHH
Confidence 4443334444 5569999999996654444333321111 1556999999999999998887
|
|
| >TIGR00596 rad1 DNA repair protein (rad1) | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00012 Score=77.88 Aligned_cols=43 Identities=21% Similarity=0.317 Sum_probs=35.4
Q ss_pred cccchhhhHHHHHHhhhcC--------CCCcEEEEEcchhHHHHHHHHHHh
Q psy9620 280 AEHEKENKLFGLLNDISSK--------DENKTIIFAETKRKVDKITKSIQN 322 (453)
Q Consensus 280 ~~~~k~~~l~~ll~~~~~~--------~~~~~lVF~~s~~~~~~l~~~L~~ 322 (453)
.+..|...|.++|+++... ..+++||||+...+|..|.++|..
T Consensus 267 Ee~PKw~~L~eiL~eI~~~~~~~~~~~~~~~iLI~~~d~~T~~qL~~~L~~ 317 (814)
T TIGR00596 267 EENPKWEVLTDVLKEISHEMRMTNRLQGPGKVLIMCSDNRTCLQLRDYLTT 317 (814)
T ss_pred ccCCCHHHHHHHHHHHHhHHhhhcccCCCCcEEEEEcchHHHHHHHHHHHh
Confidence 4678899999999877543 346899999999999999999865
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit |
| >COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0013 Score=72.01 Aligned_cols=81 Identities=19% Similarity=0.331 Sum_probs=55.9
Q ss_pred HHHHHH--HhcCCCcEEEEeccCccCCCCCCCcEEEEcCCCCChhHHHHhhhcccCC--C-Cc-ceEEEEEcCCChHHHH
Q psy9620 340 DYVLKE--FRNGRAGILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRS--D-NT-GTSYTFFTQQNSRQAK 413 (453)
Q Consensus 340 ~~~~~~--f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~--g-~~-g~~~~~~~~~~~~~~~ 413 (453)
.....+ .+....++||.++++-.|.|.|.++ .+-.|-|.--...+|.+-|+.|. + ++ |..+-|.. ....++
T Consensus 581 ~~~~~r~~~~~d~~kilIV~dmlLTGFDaP~L~-TmYvDK~Lk~H~L~QAisRtNR~~~~~K~~G~IVDf~g--l~e~l~ 657 (962)
T COG0610 581 KDLIKRFKLKDDPLDLLIVVDMLLTGFDAPCLN-TLYVDKPLKYHNLIQAISRTNRVFPGKKKFGLIVDFRG--LKEALK 657 (962)
T ss_pred hhhhhhhcCcCCCCCEEEEEccccccCCccccc-eEEeccccccchHHHHHHHhccCCCCCCCCcEEEECcc--hHHHHH
Confidence 334444 3456899999999999999999776 55678887788899999999998 3 23 33333333 455555
Q ss_pred HHHHHHHhcC
Q psy9620 414 DLIDVLTESN 423 (453)
Q Consensus 414 ~l~~~l~~~~ 423 (453)
+.++.+....
T Consensus 658 ~Al~~Y~~~~ 667 (962)
T COG0610 658 KALKLYSNEG 667 (962)
T ss_pred HHHHHhhccc
Confidence 5555544444
|
|
| >PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00021 Score=65.14 Aligned_cols=73 Identities=19% Similarity=0.283 Sum_probs=49.5
Q ss_pred CCCHHHHHHHHHHhcCCc-EEEEecCCCcchhhhhHHHHHHhhhc-CCCCCCCCcEEEEEcCCHHHHHHHHHHHHH
Q psy9620 135 RPTPIQAQGWPIAMSGSN-MVGVAQTGSGKTLAYMLPAIVHINHQ-SQLKPGDGPIVLVLAPTRELAQQIQEVARD 208 (453)
Q Consensus 135 ~~~~~Q~~~i~~i~~g~d-~li~a~TGsGKT~~~~l~~l~~~~~~-~~~~~~~~~~vlil~Ptr~La~q~~~~~~~ 208 (453)
++++-|.+|+..+++... .+|.+|.|+|||.+.. .++..+... .......+.++|+++|+..-+.++.+.+.+
T Consensus 1 ~ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~-~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALSSNGITLIQGPPGTGKTTTLA-SIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHH-HHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHH-HHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 367899999999999888 8999999999995433 333333110 000112566799999999999999888877
|
|
| >PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00077 Score=62.17 Aligned_cols=84 Identities=30% Similarity=0.304 Sum_probs=66.5
Q ss_pred CCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhc
Q psy9620 131 QGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFG 210 (453)
Q Consensus 131 ~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~ 210 (453)
.|+ .|+++|.-++-.+..|+ |+...||-|||++..+|++..... |..|-|++.+..||..-++++..+.
T Consensus 74 ~g~-~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL~--------G~~V~vvT~NdyLA~RD~~~~~~~y 142 (266)
T PF07517_consen 74 LGL-RPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNALQ--------GKGVHVVTSNDYLAKRDAEEMRPFY 142 (266)
T ss_dssp TS-----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHTT--------SS-EEEEESSHHHHHHHHHHHHHHH
T ss_pred cCC-cccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHHh--------cCCcEEEeccHHHhhccHHHHHHHH
Confidence 355 89999999998787777 999999999999988888766553 5569999999999999999999999
Q ss_pred CCCCceEEEEeCCcc
Q psy9620 211 SSTYLRSTCVYGGAS 225 (453)
Q Consensus 211 ~~~~~~~~~~~gg~~ 225 (453)
..+++.+.++..+.+
T Consensus 143 ~~LGlsv~~~~~~~~ 157 (266)
T PF07517_consen 143 EFLGLSVGIITSDMS 157 (266)
T ss_dssp HHTT--EEEEETTTE
T ss_pred HHhhhccccCccccC
Confidence 999999999988765
|
SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A .... |
| >smart00492 HELICc3 helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0016 Score=54.28 Aligned_cols=77 Identities=19% Similarity=0.206 Sum_probs=53.6
Q ss_pred EcCCCCHHHHHHHHHHHhcCC-CcEEEEeccCccCCCCCCC--cEEEEcCCCCC--------------------------
Q psy9620 330 IHGDKSQQERDYVLKEFRNGR-AGILVATDVAARGLDVDDV--KFVINFDYPNN-------------------------- 380 (453)
Q Consensus 330 ~h~~~~~~~r~~~~~~f~~g~-~~vLvaT~~~~~GiDip~v--~~VI~~d~p~s-------------------------- 380 (453)
+....+..+...+++.|+... ..||++|..+++|||+|+- +.||...+|..
T Consensus 27 ~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~ 106 (141)
T smart00492 27 LVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPFPYPDSPILKARLELLRDKGQIRPFDFV 106 (141)
T ss_pred EEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhCCCCchhHH
Confidence 344455556788899998654 3799999889999999974 57887776631
Q ss_pred -----hhHHHHhhhcccCCCCcceEEEEEcC
Q psy9620 381 -----SEDYIHRIGRTGRSDNTGTSYTFFTQ 406 (453)
Q Consensus 381 -----~~~y~qr~GRagR~g~~g~~~~~~~~ 406 (453)
.....|-+||+-|...+--+++++++
T Consensus 107 ~~~~a~~~l~Qa~GR~iR~~~D~g~i~l~D~ 137 (141)
T smart00492 107 SLPDAMRTLAQCVGRLIRGANDYGVVVIADK 137 (141)
T ss_pred HHHHHHHHHHHHhCccccCcCceEEEEEEec
Confidence 12236888999998655445555543
|
|
| >smart00491 HELICc2 helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0012 Score=55.10 Aligned_cols=70 Identities=21% Similarity=0.308 Sum_probs=49.9
Q ss_pred HHHHHHHHHHhcCCC---cEEEEecc--CccCCCCCC--CcEEEEcCCCCC-----------------------------
Q psy9620 337 QERDYVLKEFRNGRA---GILVATDV--AARGLDVDD--VKFVINFDYPNN----------------------------- 380 (453)
Q Consensus 337 ~~r~~~~~~f~~g~~---~vLvaT~~--~~~GiDip~--v~~VI~~d~p~s----------------------------- 380 (453)
.+...+++.|++... .||+++.- +++|||+|+ ++.||...+|..
T Consensus 31 ~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (142)
T smart00491 31 GETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPNPDSPILRARLEYLDEKGGIRPFDEVYLF 110 (142)
T ss_pred chHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 355778888887543 69999987 999999997 467888777631
Q ss_pred --hhHHHHhhhcccCCCCcceEEEEEcC
Q psy9620 381 --SEDYIHRIGRTGRSDNTGTSYTFFTQ 406 (453)
Q Consensus 381 --~~~y~qr~GRagR~g~~g~~~~~~~~ 406 (453)
+....|-+||+-|...+--+++++++
T Consensus 111 ~a~~~~~Qa~GR~iR~~~D~g~i~l~D~ 138 (142)
T smart00491 111 DAMRALAQAIGRAIRHKNDYGVVVLLDK 138 (142)
T ss_pred HHHHHHHHHhCccccCccceEEEEEEec
Confidence 11226888999998666445555554
|
|
| >KOG1802|consensus | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0006 Score=68.52 Aligned_cols=85 Identities=19% Similarity=0.220 Sum_probs=66.5
Q ss_pred HHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHH
Q psy9620 127 EVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVA 206 (453)
Q Consensus 127 ~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~ 206 (453)
.+...++.+++.-|..|+.++++..-.||++|.|+|||.+-.-- +.++... ....+||++|+..-+.|+++.+
T Consensus 402 ~~s~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~I-Vyhl~~~------~~~~VLvcApSNiAVDqLaeKI 474 (935)
T KOG1802|consen 402 RFSVPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATI-VYHLARQ------HAGPVLVCAPSNIAVDQLAEKI 474 (935)
T ss_pred hhcCCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhHHH-HHHHHHh------cCCceEEEcccchhHHHHHHHH
Confidence 34445788999999999999999999999999999999875443 3344332 2445999999999999999998
Q ss_pred HHhcCCCCceEEEEeC
Q psy9620 207 RDFGSSTYLRSTCVYG 222 (453)
Q Consensus 207 ~~~~~~~~~~~~~~~g 222 (453)
.+.+ ++++-+..
T Consensus 475 h~tg----LKVvRl~a 486 (935)
T KOG1802|consen 475 HKTG----LKVVRLCA 486 (935)
T ss_pred HhcC----ceEeeeeh
Confidence 8854 67666544
|
|
| >PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.00073 Score=64.65 Aligned_cols=69 Identities=23% Similarity=0.171 Sum_probs=50.6
Q ss_pred CCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhc
Q psy9620 136 PTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFG 210 (453)
Q Consensus 136 ~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~ 210 (453)
+++-|.+++.. ...+++|.|..|||||.+.+--++..+.... . +..++|+|++|+..|..+.+.+....
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~-~---~~~~Il~lTft~~aa~e~~~ri~~~l 69 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGG-V---PPERILVLTFTNAAAQEMRERIRELL 69 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSS-S---TGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhcccc-C---ChHHheecccCHHHHHHHHHHHHHhc
Confidence 47889999877 6789999999999999876554444443332 1 23459999999999999998888753
|
THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A .... |
| >PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0032 Score=59.70 Aligned_cols=87 Identities=18% Similarity=0.195 Sum_probs=51.7
Q ss_pred CCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhcCCCCceEEEEeCCc-----
Q psy9620 150 GSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGSSTYLRSTCVYGGA----- 224 (453)
Q Consensus 150 g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~----- 224 (453)
.+.+|++-.+|+|||+..+..+. .+...... .....+|||||. .+..|+..++.++.....+++....+..
T Consensus 25 ~~g~lL~de~GlGKT~~~i~~~~-~l~~~~~~--~~~~~~LIv~P~-~l~~~W~~E~~~~~~~~~~~v~~~~~~~~~~~~ 100 (299)
T PF00176_consen 25 PRGGLLADEMGLGKTITAIALIS-YLKNEFPQ--RGEKKTLIVVPS-SLLSQWKEEIEKWFDPDSLRVIIYDGDSERRRL 100 (299)
T ss_dssp T-EEEE---TTSSHHHHHHHHHH-HHHHCCTT--SS-S-EEEEE-T-TTHHHHHHHHHHHSGT-TS-EEEESSSCHHHHT
T ss_pred CCCEEEEECCCCCchhhhhhhhh-hhhhcccc--ccccceeEeecc-chhhhhhhhhccccccccccccccccccccccc
Confidence 35789999999999987654443 33332211 011249999999 8889999999999866566777666655
Q ss_pred cCCCCCCceEEEEecc
Q psy9620 225 SKGPQPDRQVLMWSAT 240 (453)
Q Consensus 225 ~~~~~~~~q~v~~SAT 240 (453)
.........++++|-.
T Consensus 101 ~~~~~~~~~vvi~ty~ 116 (299)
T PF00176_consen 101 SKNQLPKYDVVITTYE 116 (299)
T ss_dssp TSSSCCCSSEEEEEHH
T ss_pred cccccccceeeecccc
Confidence 2233355667776644
|
g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W. |
| >KOG1015|consensus | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0021 Score=67.17 Aligned_cols=120 Identities=23% Similarity=0.260 Sum_probs=95.9
Q ss_pred chhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhc----------------------CCeEEEEcCCCCHHHHH
Q psy9620 283 EKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNY----------------------GWAAVGIHGDKSQQERD 340 (453)
Q Consensus 283 ~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~----------------------~~~~~~~h~~~~~~~r~ 340 (453)
.|.-.|+++|..+. .-..+.|||-.+....+.+..+|... |..-..|.|..+..+|.
T Consensus 1126 gKmiLLleIL~mce-eIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~ 1204 (1567)
T KOG1015|consen 1126 GKMILLLEILRMCE-EIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRK 1204 (1567)
T ss_pred cceehHHHHHHHHH-HhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHH
Confidence 34445666665542 34679999999999999998888641 33456788999999999
Q ss_pred HHHHHHhcC---C-CcEEEEeccCccCCCCCCCcEEEEcCCCCChhHHHHhhhcccCCCCcceEEEE
Q psy9620 341 YVLKEFRNG---R-AGILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTF 403 (453)
Q Consensus 341 ~~~~~f~~g---~-~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~ 403 (453)
.+.+.|.+- + .-.||+|.+-+-||++-+.+.||.||..+++.-=+|-+=|+=|.|+.--||++
T Consensus 1205 k~~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiY 1271 (1567)
T KOG1015|consen 1205 KWAEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIY 1271 (1567)
T ss_pred HHHHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeeh
Confidence 999999853 2 33889999999999999999999999999998889988899998876555544
|
|
| >COG3973 Superfamily I DNA and RNA helicases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.028 Score=56.62 Aligned_cols=92 Identities=21% Similarity=0.197 Sum_probs=57.1
Q ss_pred cCCCHH-HHHHHHHCCCCCCCH----HHHHHHHHHh--cCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEE
Q psy9620 118 ANFPDY-VLKEVKRQGFDRPTP----IQAQGWPIAM--SGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVL 190 (453)
Q Consensus 118 ~~l~~~-l~~~l~~~g~~~~~~----~Q~~~i~~i~--~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vl 190 (453)
....++ |...|++.--.+++. +|.+-=.+|. .++-+++++..|||||.+++--+...+......- .+.-+|
T Consensus 187 ~~~~dEvL~~~Lek~ss~~mrdIV~TIQkEQneIIR~ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l--~~k~vl 264 (747)
T COG3973 187 TGGRDEVLQRVLEKNSSAKMRDIVETIQKEQNEIIRFEKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPL--QAKPVL 264 (747)
T ss_pred CchHHHHHHHHHHhccchhHHHHHHHhhHhHHHHHhccCCCeEEEecCCCCCchhHHHHHHHHHHhcccccc--ccCceE
Confidence 344444 455677664444433 3544444455 4566889999999999886533322233222111 222399
Q ss_pred EEcCCHHHHHHHHHHHHHhcC
Q psy9620 191 VLAPTRELAQQIQEVARDFGS 211 (453)
Q Consensus 191 il~Ptr~La~q~~~~~~~~~~ 211 (453)
|+.|.+-+..-+...+-+++.
T Consensus 265 vl~PN~vFleYis~VLPeLGe 285 (747)
T COG3973 265 VLGPNRVFLEYISRVLPELGE 285 (747)
T ss_pred EEcCcHHHHHHHHHhchhhcc
Confidence 999999999998888887764
|
|
| >PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0021 Score=57.06 Aligned_cols=63 Identities=22% Similarity=0.244 Sum_probs=44.1
Q ss_pred CCCHHHHHHHHHHhcCC--cEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHH
Q psy9620 135 RPTPIQAQGWPIAMSGS--NMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEV 205 (453)
Q Consensus 135 ~~~~~Q~~~i~~i~~g~--d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~ 205 (453)
++++-|.+++..++... -++++++.|+|||.+ +..+...+.. .+.++++++||...+..+.+.
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~-l~~~~~~~~~-------~g~~v~~~apT~~Aa~~L~~~ 65 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTL-LKALAEALEA-------AGKRVIGLAPTNKAAKELREK 65 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHH-HHHHHHHHHH-------TT--EEEEESSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHH-HHHHHHHHHh-------CCCeEEEECCcHHHHHHHHHh
Confidence 47889999999997543 467889999999964 2334444433 356799999999988886665
|
|
| >TIGR00376 DNA helicase, putative | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0024 Score=66.99 Aligned_cols=68 Identities=21% Similarity=0.163 Sum_probs=52.9
Q ss_pred CCCCHHHHHHHHHHhcC-CcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHh
Q psy9620 134 DRPTPIQAQGWPIAMSG-SNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDF 209 (453)
Q Consensus 134 ~~~~~~Q~~~i~~i~~g-~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~ 209 (453)
..+++.|.+|+..++.. ..++|.+|+|+|||.+..-.+. .+.. .+.++|+++||..-+.++.+.+...
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~-~~~~-------~g~~VLv~a~sn~Avd~l~e~l~~~ 224 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIR-QLVK-------RGLRVLVTAPSNIAVDNLLERLALC 224 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHH-HHHH-------cCCCEEEEcCcHHHHHHHHHHHHhC
Confidence 46899999999998876 5678999999999966433333 3322 2457999999999999998888764
|
The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases. |
| >PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [] | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0027 Score=56.13 Aligned_cols=59 Identities=14% Similarity=0.180 Sum_probs=40.9
Q ss_pred CCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHH
Q psy9620 134 DRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTREL 198 (453)
Q Consensus 134 ~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~L 198 (453)
...+..|..++.++++..-+++.+|.|||||+.++..+++.+... .--+++|+-|..+.
T Consensus 3 ~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g------~~~kiii~Rp~v~~ 61 (205)
T PF02562_consen 3 KPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEG------EYDKIIITRPPVEA 61 (205)
T ss_dssp ---SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTT------S-SEEEEEE-S--T
T ss_pred cCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhC------CCcEEEEEecCCCC
Confidence 356889999999999888888999999999999988888877652 23457888888654
|
; GO: 0005524 ATP binding; PDB: 3B85_A. |
| >KOG1803|consensus | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.0044 Score=62.08 Aligned_cols=65 Identities=20% Similarity=0.203 Sum_probs=51.8
Q ss_pred CCCHHHHHHHHHHhcCCc-EEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHH
Q psy9620 135 RPTPIQAQGWPIAMSGSN-MVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVAR 207 (453)
Q Consensus 135 ~~~~~Q~~~i~~i~~g~d-~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~ 207 (453)
.+.+-|.+|+....+.++ .++.+|+|+|||.+...-+.+.+.+ +.++||++||.+-+..+.+.+.
T Consensus 185 ~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~--------~k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 185 NLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQ--------KKRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred cccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHc--------CCeEEEEcCchHHHHHHHHHhc
Confidence 678899999999888765 5678999999998866655555443 4569999999999988888644
|
|
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.0051 Score=57.29 Aligned_cols=37 Identities=16% Similarity=0.178 Sum_probs=21.3
Q ss_pred CCCCCHHHHHHHHHHhcC--------CcEEEEecCCCcchhhhhH
Q psy9620 133 FDRPTPIQAQGWPIAMSG--------SNMVGVAQTGSGKTLAYML 169 (453)
Q Consensus 133 ~~~~~~~Q~~~i~~i~~g--------~d~li~a~TGsGKT~~~~l 169 (453)
|..-+|++++.-.+|+.+ .+.++-.-+|+|=+...+.
T Consensus 107 yR~w~p~rSKlaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lA 151 (293)
T PTZ00146 107 YRVWNPFRSKLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVS 151 (293)
T ss_pred eeeeCCcccHHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHH
Confidence 445556666655555433 2456777777776655433
|
|
| >PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.0065 Score=65.30 Aligned_cols=73 Identities=15% Similarity=0.203 Sum_probs=58.1
Q ss_pred CCcEEEEeccCccCCCCCCCcEEEEcCCCCChhHHHHhhhcccCC--CCcc--------eEEEEEcCCChHHHHHHHHHH
Q psy9620 350 RAGILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRS--DNTG--------TSYTFFTQQNSRQAKDLIDVL 419 (453)
Q Consensus 350 ~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~--g~~g--------~~~~~~~~~~~~~~~~l~~~l 419 (453)
..+.|++-+++.+|.|.|+|-.++.+.-..|...-.|.+||.-|. ++.| .-.++.+.....++..|..-+
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~~vnq~G~R~~~~~~~LTvianesy~dFa~~LQ~EI 580 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRLPVDENGHRVSQEEFRLNYLIDYDEKDFASKLVGEI 580 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceeccccccCccccCccEEEEEEeCccHHHHHHHHHHHH
Confidence 688999999999999999999999999888888999999999886 2222 223445556677888888777
Q ss_pred Hhc
Q psy9620 420 TES 422 (453)
Q Consensus 420 ~~~ 422 (453)
++.
T Consensus 581 ~~~ 583 (986)
T PRK15483 581 NSD 583 (986)
T ss_pred Hhh
Confidence 654
|
|
| >PRK14873 primosome assembly protein PriA; Provisional | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.03 Score=58.87 Aligned_cols=94 Identities=16% Similarity=0.222 Sum_probs=78.4
Q ss_pred ccchhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhc-C-CeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEec
Q psy9620 281 EHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNY-G-WAAVGIHGDKSQQERDYVLKEFRNGRAGILVATD 358 (453)
Q Consensus 281 ~~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~-~-~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~ 358 (453)
...|.+..+.++...... ++.+||.++....+..+...|+.. + ..+..+|+.++..+|.+...+..+|+.+|+|.|-
T Consensus 170 GSGKTevyl~~i~~~l~~-Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtR 248 (665)
T PRK14873 170 GEDWARRLAAAAAATLRA-GRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTR 248 (665)
T ss_pred CCcHHHHHHHHHHHHHHc-CCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcc
Confidence 346778888888776553 568999999999999999999865 3 5789999999999999999999999999999998
Q ss_pred cCccCCCCCCCcEEEEcC
Q psy9620 359 VAARGLDVDDVKFVINFD 376 (453)
Q Consensus 359 ~~~~GiDip~v~~VI~~d 376 (453)
.+.- .-+++..+||..+
T Consensus 249 SAvF-aP~~~LgLIIvdE 265 (665)
T PRK14873 249 SAVF-APVEDLGLVAIWD 265 (665)
T ss_pred eeEE-eccCCCCEEEEEc
Confidence 7654 5677888877543
|
|
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.0096 Score=55.47 Aligned_cols=10 Identities=10% Similarity=0.072 Sum_probs=5.3
Q ss_pred EcCCCCHHHH
Q psy9620 330 IHGDKSQQER 339 (453)
Q Consensus 330 ~h~~~~~~~r 339 (453)
++...+++++
T Consensus 242 id~g~~pe~~ 251 (293)
T PTZ00146 242 IDSTAKPEVV 251 (293)
T ss_pred cccCCCHHHH
Confidence 3455555554
|
|
| >PF13871 Helicase_C_4: Helicase_C-like | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.024 Score=52.46 Aligned_cols=67 Identities=21% Similarity=0.481 Sum_probs=53.7
Q ss_pred HHHHHHhcCCCcEEEEeccCccCCCCCC--------CcEEEEcCCCCChhHHHHhhhcccCCCCc-ceEEEEEcCC
Q psy9620 341 YVLKEFRNGRAGILVATDVAARGLDVDD--------VKFVINFDYPNNSEDYIHRIGRTGRSDNT-GTSYTFFTQQ 407 (453)
Q Consensus 341 ~~~~~f~~g~~~vLvaT~~~~~GiDip~--------v~~VI~~d~p~s~~~y~qr~GRagR~g~~-g~~~~~~~~~ 407 (453)
...+.|.+|+.+|+|.+++.+.||-+.+ -++-|...+|++.+..+|..||+-|.++. .-.|.++..+
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~ 127 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTD 127 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecC
Confidence 5577899999999999999999998753 22566788999999999999999999864 3345555443
|
|
| >PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.032 Score=49.99 Aligned_cols=86 Identities=24% Similarity=0.417 Sum_probs=65.6
Q ss_pred cccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhc---CCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEE
Q psy9620 114 EFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMS---GSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVL 190 (453)
Q Consensus 114 ~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~---g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vl 190 (453)
.|.....|++|+=.+.. ++ -+++.|.++...+.+ ++|.+.++-.|.|||.+ ++|++..+..+. ...|.
T Consensus 4 ~w~p~~~P~wLl~E~e~-~i-liR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsV-I~Pmla~~LAdg------~~Lvr 74 (229)
T PF12340_consen 4 NWDPMEYPDWLLFEIES-NI-LIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSV-IVPMLALALADG------SRLVR 74 (229)
T ss_pred CCCchhChHHHHHHHHc-Cc-eeeHHHHHHHHHHhCCCCCCCeEeeecccCCccch-HHHHHHHHHcCC------CcEEE
Confidence 56677778888766643 34 799999999988874 68999999999999976 688888777642 33566
Q ss_pred EEcCCHHHHHHHHHHHHHh
Q psy9620 191 VLAPTRELAQQIQEVARDF 209 (453)
Q Consensus 191 il~Ptr~La~q~~~~~~~~ 209 (453)
+++| ++|..|....++..
T Consensus 75 viVp-k~Ll~q~~~~L~~~ 92 (229)
T PF12340_consen 75 VIVP-KALLEQMRQMLRSR 92 (229)
T ss_pred EEcC-HHHHHHHHHHHHHH
Confidence 6677 57889988887764
|
There are two conserved sequence motifs: LLE and NMG. |
| >PRK05580 primosome assembly protein PriA; Validated | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.029 Score=59.59 Aligned_cols=92 Identities=12% Similarity=0.191 Sum_probs=72.3
Q ss_pred cchhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhc-CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccC
Q psy9620 282 HEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNY-GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVA 360 (453)
Q Consensus 282 ~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~-~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~ 360 (453)
.-|....+.++..... .+.++||.++++..+.++++.|++. +..+..+|++++..+|.....+...|+.+|+|+|..+
T Consensus 173 SGKT~v~l~~i~~~l~-~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsa 251 (679)
T PRK05580 173 SGKTEVYLQAIAEVLA-QGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSA 251 (679)
T ss_pred ChHHHHHHHHHHHHHH-cCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHH
Confidence 3455555444444333 2568999999999999999999864 7789999999999999999999999999999999754
Q ss_pred ccCCCCCCCcEEEEc
Q psy9620 361 ARGLDVDDVKFVINF 375 (453)
Q Consensus 361 ~~GiDip~v~~VI~~ 375 (453)
.. +.+.++.+||.-
T Consensus 252 l~-~p~~~l~liVvD 265 (679)
T PRK05580 252 LF-LPFKNLGLIIVD 265 (679)
T ss_pred hc-ccccCCCEEEEE
Confidence 33 567788877753
|
|
| >TIGR00595 priA primosomal protein N' | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.029 Score=57.35 Aligned_cols=90 Identities=12% Similarity=0.201 Sum_probs=70.9
Q ss_pred chhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhc-CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCc
Q psy9620 283 EKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNY-GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAA 361 (453)
Q Consensus 283 ~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~-~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~ 361 (453)
-|....+.++..... ...++||.+|++.-+.++++.|++. +..+..+|+.++..+|..+..+..+|+.+|+|+|..+.
T Consensus 9 GKT~v~l~~i~~~l~-~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsal 87 (505)
T TIGR00595 9 GKTEVYLQAIEKVLA-LGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSAL 87 (505)
T ss_pred CHHHHHHHHHHHHHH-cCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHH
Confidence 344444555544433 3568999999999999999999864 67789999999999999999999999999999997544
Q ss_pred cCCCCCCCcEEEE
Q psy9620 362 RGLDVDDVKFVIN 374 (453)
Q Consensus 362 ~GiDip~v~~VI~ 374 (453)
. +.++++.+||.
T Consensus 88 f-~p~~~l~lIIV 99 (505)
T TIGR00595 88 F-LPFKNLGLIIV 99 (505)
T ss_pred c-CcccCCCEEEE
Confidence 3 45777887774
|
All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK10917 ATP-dependent DNA helicase RecG; Provisional | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.033 Score=59.28 Aligned_cols=75 Identities=17% Similarity=0.314 Sum_probs=64.7
Q ss_pred CCcEEEEEcchhHHHHHHHHHHhc----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecc-CccCCCCCCCcEEEE
Q psy9620 300 ENKTIIFAETKRKVDKITKSIQNY----GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDV-AARGLDVDDVKFVIN 374 (453)
Q Consensus 300 ~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~-~~~GiDip~v~~VI~ 374 (453)
..+++|.+||+.-|.+.++.+... ++.+..+||+++..+|..+++.+.+|+.+|+|+|.. +...+.+.++.+||.
T Consensus 310 g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~lvVI 389 (681)
T PRK10917 310 GYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFHNLGLVII 389 (681)
T ss_pred CCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhcccceEEE
Confidence 568999999999999888887653 688999999999999999999999999999999974 445677888888773
|
|
| >PRK11054 helD DNA helicase IV; Provisional | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.033 Score=58.87 Aligned_cols=79 Identities=23% Similarity=0.224 Sum_probs=54.1
Q ss_pred CCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhcCCC
Q psy9620 134 DRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGSST 213 (453)
Q Consensus 134 ~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~~~~ 213 (453)
..+++-|++|+-.- ..+++|.|..|||||.+.+--+. ++...... ....+|+|+.|+..|..+.+.+.......
T Consensus 195 ~~L~~~Q~~av~~~--~~~~lV~agaGSGKT~vl~~r~a-yLl~~~~~---~~~~IL~ltft~~AA~em~eRL~~~lg~~ 268 (684)
T PRK11054 195 SPLNPSQARAVVNG--EDSLLVLAGAGSGKTSVLVARAG-WLLARGQA---QPEQILLLAFGRQAAEEMDERIRERLGTE 268 (684)
T ss_pred CCCCHHHHHHHhCC--CCCeEEEEeCCCCHHHHHHHHHH-HHHHhCCC---CHHHeEEEeccHHHHHHHHHHHHHhcCCC
Confidence 36999999988543 35689999999999977544332 23222111 23369999999999999999887764333
Q ss_pred CceEE
Q psy9620 214 YLRST 218 (453)
Q Consensus 214 ~~~~~ 218 (453)
.+.+.
T Consensus 269 ~v~v~ 273 (684)
T PRK11054 269 DITAR 273 (684)
T ss_pred CcEEE
Confidence 34333
|
|
| >PRK10536 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.021 Score=52.22 Aligned_cols=61 Identities=20% Similarity=0.143 Sum_probs=44.7
Q ss_pred CCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHH
Q psy9620 132 GFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTREL 198 (453)
Q Consensus 132 g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~L 198 (453)
++...+..|...+..+.+...+++.+++|||||+..+..++..+... .-.+++|.-|+.+.
T Consensus 56 ~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~------~~~kIiI~RP~v~~ 116 (262)
T PRK10536 56 PILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHK------DVDRIIVTRPVLQA 116 (262)
T ss_pred cccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcC------CeeEEEEeCCCCCc
Confidence 45567889999999998888888999999999988776666555331 12246666677543
|
|
| >COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.014 Score=53.87 Aligned_cols=52 Identities=25% Similarity=0.353 Sum_probs=38.5
Q ss_pred CCCccccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhc
Q psy9620 108 APNPITEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQ 178 (453)
Q Consensus 108 ~p~p~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~ 178 (453)
+|..+.+|+++++|+.+.+.+. . ..-=+|+.+|||||||.+ +..++.+++..
T Consensus 101 Ip~~i~~~e~LglP~i~~~~~~-~-----------------~~GLILVTGpTGSGKSTT-lAamId~iN~~ 152 (353)
T COG2805 101 IPSKIPTLEELGLPPIVRELAE-S-----------------PRGLILVTGPTGSGKSTT-LAAMIDYINKH 152 (353)
T ss_pred cCccCCCHHHcCCCHHHHHHHh-C-----------------CCceEEEeCCCCCcHHHH-HHHHHHHHhcc
Confidence 6888889999999987776332 1 122368899999999965 56778887764
|
|
| >PRK13833 conjugal transfer protein TrbB; Provisional | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.028 Score=53.62 Aligned_cols=65 Identities=28% Similarity=0.192 Sum_probs=41.4
Q ss_pred HHHHHCCCCCCCHHHHHHHHHH-hcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHH
Q psy9620 126 KEVKRQGFDRPTPIQAQGWPIA-MSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTREL 198 (453)
Q Consensus 126 ~~l~~~g~~~~~~~Q~~~i~~i-~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~L 198 (453)
+.+.+.|. +++.|.+.+..+ ..+.++|++++||||||.. +-.++..+...+ ..-+++++=.+.||
T Consensus 121 ~~lv~~g~--~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTl-l~aL~~~i~~~~-----~~~rivtiEd~~El 186 (323)
T PRK13833 121 DDYVTSKI--MTEAQASVIRSAIDSRLNIVISGGTGSGKTTL-ANAVIAEIVASA-----PEDRLVILEDTAEI 186 (323)
T ss_pred HHHHHcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHHHhcCC-----CCceEEEecCCccc
Confidence 33444444 677788777654 4678999999999999954 344444443211 12357777677776
|
|
| >PRK13894 conjugal transfer ATPase TrbB; Provisional | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.03 Score=53.54 Aligned_cols=66 Identities=24% Similarity=0.277 Sum_probs=42.3
Q ss_pred HHHHHHCCCCCCCHHHHHHHHH-HhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHH
Q psy9620 125 LKEVKRQGFDRPTPIQAQGWPI-AMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTREL 198 (453)
Q Consensus 125 ~~~l~~~g~~~~~~~Q~~~i~~-i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~L 198 (453)
++.+.+.|+ +++.|.+.+.. +..+++++++++||||||. ++-.++..+.... ...+++++-.+.||
T Consensus 124 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTT-ll~aL~~~~~~~~-----~~~rivtIEd~~El 190 (319)
T PRK13894 124 LDQYVERGI--MTAAQREAIIAAVRAHRNILVIGGTGSGKTT-LVNAIINEMVIQD-----PTERVFIIEDTGEI 190 (319)
T ss_pred HHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHH-HHHHHHHhhhhcC-----CCceEEEEcCCCcc
Confidence 344544454 66778888765 4578899999999999994 4444444432111 23357777777665
|
|
| >KOG1596|consensus | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.039 Score=49.05 Aligned_cols=34 Identities=18% Similarity=0.159 Sum_probs=21.1
Q ss_pred CCCCCCHHHHHHHHHHhcCCcE--------EEEecCCCcchh
Q psy9620 132 GFDRPTPIQAQGWPIAMSGSNM--------VGVAQTGSGKTL 165 (453)
Q Consensus 132 g~~~~~~~Q~~~i~~i~~g~d~--------li~a~TGsGKT~ 165 (453)
.|.--+|+|++....|+.|-|- ++....+||-|.
T Consensus 130 EyRVWnPfrSKLAA~I~gGvdnihikpGsKVLYLGAasGttV 171 (317)
T KOG1596|consen 130 EYRVWNPFRSKLAAGILGGVDNIHIKPGSKVLYLGAASGTTV 171 (317)
T ss_pred EEEEeChHHHHHHHHhhcCccceeecCCceEEEeeccCCcee
Confidence 3556788888888888766432 333444566663
|
|
| >PRK10919 ATP-dependent DNA helicase Rep; Provisional | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.03 Score=59.39 Aligned_cols=70 Identities=20% Similarity=0.118 Sum_probs=51.4
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhc
Q psy9620 135 RPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFG 210 (453)
Q Consensus 135 ~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~ 210 (453)
.+++-|.+|+... ...++|.|..|||||.+...-+...+... .. +..++|+|+.|+..|..+.+.+.++.
T Consensus 2 ~Ln~~Q~~av~~~--~g~~lV~AgpGSGKT~vL~~Ria~Li~~~-~v---~p~~IL~lTFT~kAA~em~~Rl~~~l 71 (672)
T PRK10919 2 RLNPGQQQAVEFV--TGPCLVLAGAGSGKTRVITNKIAHLIRGC-GY---QARHIAAVTFTNKAAREMKERVAQTL 71 (672)
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHhc-CC---CHHHeeeEechHHHHHHHHHHHHHHh
Confidence 4789999998653 56789999999999987544443333221 11 22359999999999999999888764
|
|
| >TIGR00643 recG ATP-dependent DNA helicase RecG | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.065 Score=56.54 Aligned_cols=74 Identities=18% Similarity=0.296 Sum_probs=63.8
Q ss_pred CCcEEEEEcchhHHHHHHHHHHhc----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCc-cCCCCCCCcEEE
Q psy9620 300 ENKTIIFAETKRKVDKITKSIQNY----GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAA-RGLDVDDVKFVI 373 (453)
Q Consensus 300 ~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~-~GiDip~v~~VI 373 (453)
..+++|.+||+.-|.++++.+.+. ++.+..+||+++..+|..+++.+.+|+.+|+|+|..+- ..+++.++.+||
T Consensus 284 g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~~~~l~lvV 362 (630)
T TIGR00643 284 GYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVEFKRLALVI 362 (630)
T ss_pred CCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccccccccceEE
Confidence 568999999999999888877653 68999999999999999999999999999999997543 457777888777
|
|
| >COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.069 Score=56.25 Aligned_cols=96 Identities=15% Similarity=0.234 Sum_probs=79.9
Q ss_pred EEEccccchhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhc-CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEE
Q psy9620 276 VEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNY-GWAAVGIHGDKSQQERDYVLKEFRNGRAGIL 354 (453)
Q Consensus 276 ~~~~~~~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~-~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vL 354 (453)
+.-++-..|.+..++++...... ++.+||.++.+.....+.+.|+.. +.++..+|+++++.+|..+..+.++|+.+|+
T Consensus 222 l~GvTGSGKTEvYl~~i~~~L~~-GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vV 300 (730)
T COG1198 222 LDGVTGSGKTEVYLEAIAKVLAQ-GKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARVV 300 (730)
T ss_pred EeCCCCCcHHHHHHHHHHHHHHc-CCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCceEE
Confidence 34455667888888888887653 679999999999999998888764 8899999999999999999999999999999
Q ss_pred EEeccCccCCCCCCCcEEE
Q psy9620 355 VATDVAARGLDVDDVKFVI 373 (453)
Q Consensus 355 vaT~~~~~GiDip~v~~VI 373 (453)
|.|-.+-- .-+++..+||
T Consensus 301 IGtRSAlF-~Pf~~LGLII 318 (730)
T COG1198 301 IGTRSALF-LPFKNLGLII 318 (730)
T ss_pred EEechhhc-CchhhccEEE
Confidence 99976543 4566777766
|
|
| >COG1110 Reverse gyrase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.11 Score=55.55 Aligned_cols=65 Identities=17% Similarity=0.310 Sum_probs=55.2
Q ss_pred cCCCCcEEEEEcchhHHHHHHHHHHhcC-----CeEEE-EcCCCCHHHHHHHHHHHhcCCCcEEEEeccCc
Q psy9620 297 SKDENKTIIFAETKRKVDKITKSIQNYG-----WAAVG-IHGDKSQQERDYVLKEFRNGRAGILVATDVAA 361 (453)
Q Consensus 297 ~~~~~~~lVF~~s~~~~~~l~~~L~~~~-----~~~~~-~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~ 361 (453)
...+.++++.+||..-+.++++.|.... +.+.. +|+.|+..+++.++++|.+|..+|||+|+.+-
T Consensus 122 a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL 192 (1187)
T COG1110 122 AKKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFL 192 (1187)
T ss_pred HhcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHH
Confidence 3456899999999999999999887642 44444 89999999999999999999999999998643
|
|
| >TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.071 Score=50.56 Aligned_cols=66 Identities=27% Similarity=0.323 Sum_probs=40.7
Q ss_pred HHHHHHCCCCCCCHHHHHHHHH-HhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHH
Q psy9620 125 LKEVKRQGFDRPTPIQAQGWPI-AMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTREL 198 (453)
Q Consensus 125 ~~~l~~~g~~~~~~~Q~~~i~~-i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~L 198 (453)
++.+.+.|. +++.|.+.+.. +..+++++++++||||||.. +-.++..+.... ..-+++++-.+.||
T Consensus 108 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTl-l~al~~~i~~~~-----~~~ri~tiEd~~El 174 (299)
T TIGR02782 108 LDDYVEAGI--MTAAQRDVLREAVLARKNILVVGGTGSGKTTL-ANALLAEIAKND-----PTDRVVIIEDTREL 174 (299)
T ss_pred HHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHHhhccC-----CCceEEEECCchhh
Confidence 344444443 55666666655 44678999999999999954 333444432211 13357777777776
|
The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA. |
| >KOG0701|consensus | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.017 Score=65.01 Aligned_cols=93 Identities=23% Similarity=0.408 Sum_probs=77.4
Q ss_pred cEEEEEcchhHHHHHHHHHHhc-CCeEEEEcCCCC-----------HHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCC
Q psy9620 302 KTIIFAETKRKVDKITKSIQNY-GWAAVGIHGDKS-----------QQERDYVLKEFRNGRAGILVATDVAARGLDVDDV 369 (453)
Q Consensus 302 ~~lVF~~s~~~~~~l~~~L~~~-~~~~~~~h~~~~-----------~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v 369 (453)
..|+||+.+..+..+.+.++.. .+.+..+.|.+. ...+.+++..|....+++|++|.++.+|+|++.+
T Consensus 294 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~~ 373 (1606)
T KOG0701|consen 294 SGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPKC 373 (1606)
T ss_pred hheeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhhh
Confidence 4689999999999999988865 233333444322 2346789999999999999999999999999999
Q ss_pred cEEEEcCCCCChhHHHHhhhcccCC
Q psy9620 370 KFVINFDYPNNSEDYIHRIGRTGRS 394 (453)
Q Consensus 370 ~~VI~~d~p~s~~~y~qr~GRagR~ 394 (453)
+.|+.++.|.....|+|..||+-+.
T Consensus 374 ~~~~~~~~~~~~~~~vq~~~r~~~~ 398 (1606)
T KOG0701|consen 374 NLVVLFDAPTYYRSYVQKKGRARAA 398 (1606)
T ss_pred hhheeccCcchHHHHHHhhcccccc
Confidence 9999999999999999999998665
|
|
| >TIGR01075 uvrD DNA helicase II | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.05 Score=58.38 Aligned_cols=71 Identities=15% Similarity=0.121 Sum_probs=52.4
Q ss_pred CCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhc
Q psy9620 134 DRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFG 210 (453)
Q Consensus 134 ~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~ 210 (453)
..+++-|.+++... ..+++|.|..|||||.+..--+ .++...... +...+|+|+-|+..|..+.+.+.++.
T Consensus 3 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~~L~~Ri-a~Li~~~~v---~p~~IL~lTFTnkAA~em~~Rl~~~~ 73 (715)
T TIGR01075 3 DGLNDKQREAVAAP--PGNLLVLAGAGSGKTRVLTHRI-AWLLSVENA---SPHSIMAVTFTNKAAAEMRHRIGALL 73 (715)
T ss_pred cccCHHHHHHHcCC--CCCEEEEecCCCCHHHHHHHHH-HHHHHcCCC---CHHHeEeeeccHHHHHHHHHHHHHHh
Confidence 46899999998653 4689999999999997754333 333332111 23359999999999999999988874
|
Designed to identify uvrD members of the uvrD/rep subfamily. |
| >TIGR00580 mfd transcription-repair coupling factor (mfd) | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.12 Score=56.67 Aligned_cols=75 Identities=16% Similarity=0.264 Sum_probs=64.2
Q ss_pred CCcEEEEEcchhHHHHHHHHHHhc----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEec-cCccCCCCCCCcEEEE
Q psy9620 300 ENKTIIFAETKRKVDKITKSIQNY----GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATD-VAARGLDVDDVKFVIN 374 (453)
Q Consensus 300 ~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~-~~~~GiDip~v~~VI~ 374 (453)
..+++|.+||+.-|.+.++.|... ++.+..+++..+..++..+++.++.|+.+|||+|. .+...+.+.++.+||.
T Consensus 500 g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f~~L~llVI 579 (926)
T TIGR00580 500 GKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDVKFKDLGLLII 579 (926)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCCCcccCCEEEe
Confidence 468999999999999999887753 56788899999999999999999999999999997 4445678888888773
|
All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families. |
| >TIGR01448 recD_rel helicase, putative, RecD/TraA family | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.1 Score=55.81 Aligned_cols=67 Identities=21% Similarity=0.098 Sum_probs=48.8
Q ss_pred CCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHH
Q psy9620 131 QGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQE 204 (453)
Q Consensus 131 ~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~ 204 (453)
.++ .+++.|++|+..+...+-+++.++.|+|||.+. -.++..+.... ....+++++||-.-|..+.+
T Consensus 320 ~~~-~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l-~~i~~~~~~~~-----~~~~v~l~ApTg~AA~~L~e 386 (720)
T TIGR01448 320 LRK-GLSEEQKQALDTAIQHKVVILTGGPGTGKTTIT-RAIIELAEELG-----GLLPVGLAAPTGRAAKRLGE 386 (720)
T ss_pred cCC-CCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHH-HHHHHHHHHcC-----CCceEEEEeCchHHHHHHHH
Confidence 454 799999999999998889999999999999653 23333333211 11458889999887776654
|
This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD. |
| >TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.13 Score=55.18 Aligned_cols=62 Identities=21% Similarity=0.131 Sum_probs=45.7
Q ss_pred CCCHHHHHHHHHHhcC-CcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHH
Q psy9620 135 RPTPIQAQGWPIAMSG-SNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQE 204 (453)
Q Consensus 135 ~~~~~Q~~~i~~i~~g-~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~ 204 (453)
.+++-|.+|+..++.+ +-++++++.|+|||... -.++..+.. .+..+++++||---+..+.+
T Consensus 352 ~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll-~~i~~~~~~-------~g~~V~~~ApTg~Aa~~L~~ 414 (744)
T TIGR02768 352 RLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTML-KAAREAWEA-------AGYRVIGAALSGKAAEGLQA 414 (744)
T ss_pred CCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHH-HHHHHHHHh-------CCCeEEEEeCcHHHHHHHHh
Confidence 6899999999998874 56789999999999552 223333322 35679999999887776653
|
This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer. |
| >TIGR01074 rep ATP-dependent DNA helicase Rep | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.091 Score=56.01 Aligned_cols=69 Identities=17% Similarity=0.110 Sum_probs=50.8
Q ss_pred CCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhc
Q psy9620 136 PTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFG 210 (453)
Q Consensus 136 ~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~ 210 (453)
+++-|.+++.. ...+++|.|..|||||.+.+--+...+.... . ....+|+|+.|+..|.++.+.+.++.
T Consensus 2 Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~-~---~p~~IL~vTFt~~Aa~em~~Rl~~~l 70 (664)
T TIGR01074 2 LNPQQQEAVEY--VTGPCLVLAGAGSGKTRVITNKIAYLIQNCG-Y---KARNIAAVTFTNKAAREMKERVAKTL 70 (664)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcC-C---CHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 78899998864 3568999999999999775444443332211 1 23459999999999999999888754
|
Designed to identify rep members of the uvrD/rep subfamily. |
| >PRK13889 conjugal transfer relaxase TraA; Provisional | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.13 Score=56.38 Aligned_cols=64 Identities=22% Similarity=0.147 Sum_probs=47.2
Q ss_pred CCCCCCCHHHHHHHHHHhcCCc-EEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHH
Q psy9620 131 QGFDRPTPIQAQGWPIAMSGSN-MVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQ 203 (453)
Q Consensus 131 ~g~~~~~~~Q~~~i~~i~~g~d-~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~ 203 (453)
.|+ .+++-|.+|+..++.+++ +++++..|+|||.+ +-.+...+.. .+..++.++||---+..+.
T Consensus 343 ~g~-~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~-l~~~~~~~e~-------~G~~V~~~ApTGkAA~~L~ 407 (988)
T PRK13889 343 RGL-VLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM-LGVAREAWEA-------AGYEVRGAALSGIAAENLE 407 (988)
T ss_pred cCC-CCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH-HHHHHHHHHH-------cCCeEEEecCcHHHHHHHh
Confidence 344 799999999999998665 67889999999965 3333333322 3667999999988776653
|
|
| >PRK11773 uvrD DNA-dependent helicase II; Provisional | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.064 Score=57.61 Aligned_cols=71 Identities=17% Similarity=0.138 Sum_probs=52.2
Q ss_pred CCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhc
Q psy9620 134 DRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFG 210 (453)
Q Consensus 134 ~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~ 210 (453)
..+++-|.+++... ...++|.|..|||||.+..-=+. ++...... ....+|+|+-|+..|..+.+.+.++.
T Consensus 8 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~vl~~Ria-~Li~~~~v---~p~~IL~lTFT~kAA~Em~~Rl~~~~ 78 (721)
T PRK11773 8 DSLNDKQREAVAAP--LGNMLVLAGAGSGKTRVLVHRIA-WLMQVENA---SPYSIMAVTFTNKAAAEMRHRIEQLL 78 (721)
T ss_pred HhcCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHH-HHHHcCCC---ChhHeEeeeccHHHHHHHHHHHHHHh
Confidence 36899999998643 46899999999999977543333 33322111 22359999999999999999988874
|
|
| >PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases | Back alignment and domain information |
|---|
Probab=94.72 E-value=0.15 Score=46.55 Aligned_cols=103 Identities=12% Similarity=0.225 Sum_probs=72.1
Q ss_pred CCeEEEEcCCCCHHHHHHHHHHHhcC----CCcEEEEeccCccCCCCCCCcEEEEcCCCCChhHHHHhhhccc-CCCCcc
Q psy9620 324 GWAAVGIHGDKSQQERDYVLKEFRNG----RAGILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTG-RSDNTG 398 (453)
Q Consensus 324 ~~~~~~~h~~~~~~~r~~~~~~f~~g----~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRag-R~g~~g 398 (453)
++.+..++++.+... -.|.++ ...|+|.=+.++||+.+++..+.....-+.+.++++||.=--| |.|...
T Consensus 110 ~~~v~~vNS~~~~~~-----ldy~~~~~~~~~~I~VGGn~LsRGlTleGL~vsYf~R~s~~~DTL~QmgRwFGYR~gY~d 184 (239)
T PF10593_consen 110 GIEVVVVNSGSSDDS-----LDYDDGENLGLNVIAVGGNKLSRGLTLEGLTVSYFLRNSKQYDTLMQMGRWFGYRPGYED 184 (239)
T ss_pred CceEEEEeCCCcccc-----ccccccccCCceEEEECCccccCceeECCcEEEEecCCCchHHHHHHHhhcccCCccccc
Confidence 466666665544322 333333 3789999999999999999999999888898899999853334 566778
Q ss_pred eEEEEEcCCChHHHHHHHHHHHhcCCCCChHHHHHHh
Q psy9620 399 TSYTFFTQQNSRQAKDLIDVLTESNHPVDPKLSALAS 435 (453)
Q Consensus 399 ~~~~~~~~~~~~~~~~l~~~l~~~~~~v~~~l~~~~~ 435 (453)
.|-++++++-...+..+.+ ..+++.+.|..|+.
T Consensus 185 l~Ri~~~~~l~~~f~~i~~----~~e~lr~~i~~~~~ 217 (239)
T PF10593_consen 185 LCRIYMPEELYDWFRHIAE----AEEELREEIKEMAN 217 (239)
T ss_pred ceEEecCHHHHHHHHHHHH----HHHHHHHHHHHHHh
Confidence 8999988765555555444 34456666666654
|
This domain is found associated with a helicase domain of superfamily type II []. |
| >PRK10875 recD exonuclease V subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.13 Score=53.64 Aligned_cols=67 Identities=19% Similarity=0.200 Sum_probs=48.6
Q ss_pred CHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHH
Q psy9620 137 TPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVAR 207 (453)
Q Consensus 137 ~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~ 207 (453)
.++|+.|+...+..+-++|.+++|+|||.+.. -++..+..... ....++++++||..-|..+.+.+.
T Consensus 154 ~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~-~ll~~l~~~~~---~~~~~i~l~APTgkAA~rL~e~~~ 220 (615)
T PRK10875 154 VDWQKVAAAVALTRRISVISGGPGTGKTTTVA-KLLAALIQLAD---GERCRIRLAAPTGKAAARLTESLG 220 (615)
T ss_pred CHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHH-HHHHHHHHhcC---CCCcEEEEECCcHHHHHHHHHHHH
Confidence 58999999999999999999999999996532 22322322111 123568899999998888776554
|
|
| >KOG1133|consensus | Back alignment and domain information |
|---|
Probab=94.52 E-value=2.5 Score=43.76 Aligned_cols=140 Identities=16% Similarity=0.226 Sum_probs=89.6
Q ss_pred hhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCe-------EEEEcCCCCHHHHHHHHHHHh----cCCCcEE
Q psy9620 286 NKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWA-------AVGIHGDKSQQERDYVLKEFR----NGRAGIL 354 (453)
Q Consensus 286 ~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~-------~~~~h~~~~~~~r~~~~~~f~----~g~~~vL 354 (453)
..|-..+..+...-.+-+++|++|.+....+...+.+.|+- .++.-..-+ -+.+++.|. .|.-.||
T Consensus 615 ~~l~~~~~nL~~~VPgGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~---~~dvl~~Ya~a~~~g~GaiL 691 (821)
T KOG1133|consen 615 KDLGSSISNLSNAVPGGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT---VEDVLEGYAEAAERGRGAIL 691 (821)
T ss_pred HHHHHHHHHHHhhCCCcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc---HHHHHHHHHHHhhcCCCeEE
Confidence 34444445555555688999999999999999998865432 222222212 355677665 4555677
Q ss_pred EEe--ccCccCCCCCC--CcEEEEcCCCCC--------------------------------hhHHHHhhhcccCCCCcc
Q psy9620 355 VAT--DVAARGLDVDD--VKFVINFDYPNN--------------------------------SEDYIHRIGRTGRSDNTG 398 (453)
Q Consensus 355 vaT--~~~~~GiDip~--v~~VI~~d~p~s--------------------------------~~~y~qr~GRagR~g~~g 398 (453)
+|. --+++|||+.| .+.||..++|.. +...-|-+|||-|.-++=
T Consensus 692 laVVGGKlSEGINF~D~LgRaVvvVGlPyPN~~s~EL~er~k~l~~k~~~~gagke~yEnlCMkAVNQsIGRAIRH~~DY 771 (821)
T KOG1133|consen 692 LAVVGGKLSEGINFSDDLGRAVVVVGLPYPNIQSVELQERMKHLDGKLPTPGAGKELYENLCMKAVNQSIGRAIRHRKDY 771 (821)
T ss_pred EEEeccccccccccccccccEEEEeecCCCCCCCHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 665 57899999986 557887777632 111258899999987777
Q ss_pred eEEEEEcCCChHHHHHHHHHHHhcCCCCChHHHHHHhhcC
Q psy9620 399 TSYTFFTQQNSRQAKDLIDVLTESNHPVDPKLSALASRSG 438 (453)
Q Consensus 399 ~~~~~~~~~~~~~~~~l~~~l~~~~~~v~~~l~~~~~~~~ 438 (453)
-++++++..=. +... ..+|.|+........
T Consensus 772 A~i~LlD~RY~---~p~~-------RKLp~WI~~~v~s~~ 801 (821)
T KOG1133|consen 772 ASIYLLDKRYA---RPLS-------RKLPKWIRKRVHSKA 801 (821)
T ss_pred eeEEEehhhhc---Cchh-------hhccHHHHhHhcccc
Confidence 77777764321 1111 167888866654433
|
|
| >TIGR01447 recD exodeoxyribonuclease V, alpha subunit | Back alignment and domain information |
|---|
Probab=94.50 E-value=0.13 Score=53.37 Aligned_cols=69 Identities=20% Similarity=0.201 Sum_probs=48.4
Q ss_pred CHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHH
Q psy9620 137 TPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARD 208 (453)
Q Consensus 137 ~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~ 208 (453)
.+.|+.|+..++..+-++++++.|+|||.+. ..++..+...... ...+++++++||-.-|..+.+.+..
T Consensus 147 ~~~Qk~A~~~al~~~~~vitGgpGTGKTt~v-~~ll~~l~~~~~~--~~~~~I~l~APTGkAA~rL~e~~~~ 215 (586)
T TIGR01447 147 QNWQKVAVALALKSNFSLITGGPGTGKTTTV-ARLLLALVKQSPK--QGKLRIALAAPTGKAAARLAESLRK 215 (586)
T ss_pred cHHHHHHHHHHhhCCeEEEEcCCCCCHHHHH-HHHHHHHHHhccc--cCCCcEEEECCcHHHHHHHHHHHHh
Confidence 3789999999999999999999999999753 2223323222110 0135799999998888777665543
|
This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model. |
| >COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=94.40 E-value=0.061 Score=50.86 Aligned_cols=61 Identities=25% Similarity=0.149 Sum_probs=43.0
Q ss_pred CCCCCCHHHHHHHHHHhcCC-cEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHH
Q psy9620 132 GFDRPTPIQAQGWPIAMSGS-NMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQ 201 (453)
Q Consensus 132 g~~~~~~~Q~~~i~~i~~g~-d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q 201 (453)
.|..+++-|...+-.+...+ ++|+++.||||||.. +-.++..+. ..-++|.+--|.||..+
T Consensus 154 ~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTl-LNal~~~i~--------~~eRvItiEDtaELql~ 215 (355)
T COG4962 154 IFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTL-LNALSGFID--------SDERVITIEDTAELQLA 215 (355)
T ss_pred HcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHH-HHHHHhcCC--------CcccEEEEeehhhhccC
Confidence 57889999999998777654 999999999999953 121221111 12268888888887444
|
|
| >PHA00370 III attachment protein | Back alignment and domain information |
|---|
Probab=94.36 E-value=0.11 Score=46.13 Aligned_cols=11 Identities=27% Similarity=0.304 Sum_probs=5.2
Q ss_pred CCcEEEEEcCC
Q psy9620 185 DGPIVLVLAPT 195 (453)
Q Consensus 185 ~~~~vlil~Pt 195 (453)
.++.-+|+.|.
T Consensus 243 n~C~~FV~~~g 253 (297)
T PHA00370 243 HGCTPFVFAQG 253 (297)
T ss_pred CCCCcceeecc
Confidence 44444555444
|
|
| >PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins | Back alignment and domain information |
|---|
Probab=94.32 E-value=0.11 Score=51.01 Aligned_cols=60 Identities=28% Similarity=0.339 Sum_probs=44.9
Q ss_pred CCCHHHHHHHHHH------hcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHH
Q psy9620 135 RPTPIQAQGWPIA------MSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQI 202 (453)
Q Consensus 135 ~~~~~Q~~~i~~i------~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~ 202 (453)
++++-|+.++..+ .++..+++.++-|+|||.. +-.+...... .+..+++++||-.-|..+
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l--~~~i~~~~~~------~~~~~~~~a~tg~AA~~i 66 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFL--IKAIIDYLRS------RGKKVLVTAPTGIAAFNI 66 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHH--HHHHHHHhcc------ccceEEEecchHHHHHhc
Confidence 3678899998888 5688999999999999954 3333333221 356799999998877766
|
The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ]. |
| >TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type | Back alignment and domain information |
|---|
Probab=94.19 E-value=0.12 Score=58.75 Aligned_cols=66 Identities=29% Similarity=0.225 Sum_probs=49.6
Q ss_pred CCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHH
Q psy9620 136 PTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARD 208 (453)
Q Consensus 136 ~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~ 208 (453)
+|+-|.++|. ..+++++|.|..|||||.+.+--++..+.... +--++|+|+=|+..|..+.+.+.+
T Consensus 2 ~t~~Q~~ai~--~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~~-----~~~~il~~tFt~~aa~e~~~ri~~ 67 (1232)
T TIGR02785 2 WTDEQWQAIY--TRGQNILVSASAGSGKTAVLVERIIKKILRGV-----DIDRLLVVTFTNAAAREMKERIEE 67 (1232)
T ss_pred CCHHHHHHHh--CCCCCEEEEecCCCcHHHHHHHHHHHHHhcCC-----CHhhEEEEeccHHHHHHHHHHHHH
Confidence 6889999997 36889999999999999876555555444321 113499999999999887766554
|
AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species. |
| >KOG1596|consensus | Back alignment and domain information |
|---|
Probab=94.07 E-value=0.17 Score=45.17 Aligned_cols=6 Identities=50% Similarity=0.478 Sum_probs=2.5
Q ss_pred cEEEEE
Q psy9620 187 PIVLVL 192 (453)
Q Consensus 187 ~~vlil 192 (453)
.++|+|
T Consensus 158 sKVLYL 163 (317)
T KOG1596|consen 158 SKVLYL 163 (317)
T ss_pred ceEEEe
Confidence 344443
|
|
| >PRK10689 transcription-repair coupling factor; Provisional | Back alignment and domain information |
|---|
Probab=94.03 E-value=0.19 Score=56.31 Aligned_cols=74 Identities=15% Similarity=0.220 Sum_probs=62.3
Q ss_pred CCcEEEEEcchhHHHHHHHHHHhc----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEec-cCccCCCCCCCcEEE
Q psy9620 300 ENKTIIFAETKRKVDKITKSIQNY----GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATD-VAARGLDVDDVKFVI 373 (453)
Q Consensus 300 ~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~-~~~~GiDip~v~~VI 373 (453)
..+++|.|||+.-|.++++.|.+. ++.+..+++..+..++..+++.+++|..+|||+|. .+...+++.++.+||
T Consensus 649 g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~~~L~lLV 727 (1147)
T PRK10689 649 HKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKDLGLLI 727 (1147)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCHhhCCEEE
Confidence 568999999999999999888753 45778899999999999999999999999999996 444456677888766
|
|
| >PHA00370 III attachment protein | Back alignment and domain information |
|---|
Probab=94.02 E-value=0.25 Score=43.96 Aligned_cols=6 Identities=67% Similarity=1.381 Sum_probs=2.2
Q ss_pred CCCCCC
Q psy9620 22 GGGYGG 27 (453)
Q Consensus 22 ~~g~g~ 27 (453)
+|.+||
T Consensus 102 ggn~gG 107 (297)
T PHA00370 102 GGNTGG 107 (297)
T ss_pred CCCCCC
Confidence 333333
|
|
| >COG4371 Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.01 E-value=0.098 Score=46.41 Aligned_cols=12 Identities=17% Similarity=0.296 Sum_probs=4.7
Q ss_pred CcchhhhhHHHH
Q psy9620 161 SGKTLAYMLPAI 172 (453)
Q Consensus 161 sGKT~~~~l~~l 172 (453)
.|.+.+.+-+.|
T Consensus 177 ~Gr~~vlQEA~L 188 (334)
T COG4371 177 AGRARVLQEAAL 188 (334)
T ss_pred chHHHHHHHHHH
Confidence 344444333333
|
|
| >PRK13851 type IV secretion system protein VirB11; Provisional | Back alignment and domain information |
|---|
Probab=93.91 E-value=0.079 Score=51.11 Aligned_cols=44 Identities=27% Similarity=0.249 Sum_probs=28.6
Q ss_pred HHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHH
Q psy9620 146 IAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTREL 198 (453)
Q Consensus 146 ~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~L 198 (453)
++..+++++++++||||||.. +-.++..+. ..-+++.+-.+.||
T Consensus 158 ~v~~~~nilI~G~tGSGKTTl-l~aLl~~i~--------~~~rivtiEd~~El 201 (344)
T PRK13851 158 CVVGRLTMLLCGPTGSGKTTM-SKTLISAIP--------PQERLITIEDTLEL 201 (344)
T ss_pred HHHcCCeEEEECCCCccHHHH-HHHHHcccC--------CCCCEEEECCCccc
Confidence 344788999999999999954 333333332 12346666677665
|
|
| >COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=93.84 E-value=0.27 Score=50.45 Aligned_cols=86 Identities=27% Similarity=0.373 Sum_probs=62.9
Q ss_pred hhhHHHHHHhhh--cCCCCc-EEEEEcchhHHHHHHHHHHhc-----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEE
Q psy9620 285 ENKLFGLLNDIS--SKDENK-TIIFAETKRKVDKITKSIQNY-----GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVA 356 (453)
Q Consensus 285 ~~~l~~ll~~~~--~~~~~~-~lVF~~s~~~~~~l~~~L~~~-----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLva 356 (453)
...++.+|+.+. ...... +||+++|++-|.++++.+... ++.+..++|+++...+...++. | .+||||
T Consensus 81 ~Af~lP~l~~l~~~~~~~~~~aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~---~-~~ivVa 156 (513)
T COG0513 81 AAFLLPLLQKILKSVERKYVSALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKR---G-VDIVVA 156 (513)
T ss_pred HHHHHHHHHHHhcccccCCCceEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhc---C-CCEEEE
Confidence 344555666654 222222 999999999999999988753 4668899999987777654444 6 999999
Q ss_pred ec-----cCccC-CCCCCCcEEEE
Q psy9620 357 TD-----VAARG-LDVDDVKFVIN 374 (453)
Q Consensus 357 T~-----~~~~G-iDip~v~~VI~ 374 (453)
|+ .+.++ +|+..+.++|.
T Consensus 157 TPGRllD~i~~~~l~l~~v~~lVl 180 (513)
T COG0513 157 TPGRLLDLIKRGKLDLSGVETLVL 180 (513)
T ss_pred CccHHHHHHHcCCcchhhcCEEEe
Confidence 97 45566 88889998774
|
|
| >COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion] | Back alignment and domain information |
|---|
Probab=93.80 E-value=3.2 Score=40.61 Aligned_cols=64 Identities=16% Similarity=0.129 Sum_probs=35.9
Q ss_pred CCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhcCCCCceEEEE
Q psy9620 150 GSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGSSTYLRSTCV 220 (453)
Q Consensus 150 g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~~~~~~~~~~~ 220 (453)
++.+.+++|||.|||.+..=.+....+.. ++...+||.+.|--... .++++.++.-.++.+.++
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~-----~~~kVaiITtDtYRIGA--~EQLk~Ya~im~vp~~vv 266 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLK-----KKKKVAIITTDTYRIGA--VEQLKTYADIMGVPLEVV 266 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhc-----cCcceEEEEeccchhhH--HHHHHHHHHHhCCceEEe
Confidence 67789999999999977443222222111 23445777776543321 234444444455555544
|
|
| >PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif | Back alignment and domain information |
|---|
Probab=93.79 E-value=0.1 Score=45.43 Aligned_cols=46 Identities=24% Similarity=0.304 Sum_probs=26.7
Q ss_pred hcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHH
Q psy9620 148 MSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQI 202 (453)
Q Consensus 148 ~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~ 202 (453)
.+++++++.+++|+|||..+...+-. +.. .+..|+++ ++.+|...+
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~-~~~-------~g~~v~f~-~~~~L~~~l 90 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANE-AIR-------KGYSVLFI-TASDLLDEL 90 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHH-HHH-------TT--EEEE-EHHHHHHHH
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHH-hcc-------CCcceeEe-ecCceeccc
Confidence 35789999999999999765443333 332 23346554 555665554
|
They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A. |
| >PRK13900 type IV secretion system ATPase VirB11; Provisional | Back alignment and domain information |
|---|
Probab=93.78 E-value=0.16 Score=48.87 Aligned_cols=43 Identities=23% Similarity=0.257 Sum_probs=27.4
Q ss_pred HhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHH
Q psy9620 147 AMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTREL 198 (453)
Q Consensus 147 i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~L 198 (453)
+..+++++++++||||||.. +-.++..+.. .-+++.+=-+.||
T Consensus 157 v~~~~nili~G~tgSGKTTl-l~aL~~~ip~--------~~ri~tiEd~~El 199 (332)
T PRK13900 157 VISKKNIIISGGTSTGKTTF-TNAALREIPA--------IERLITVEDAREI 199 (332)
T ss_pred HHcCCcEEEECCCCCCHHHH-HHHHHhhCCC--------CCeEEEecCCCcc
Confidence 44688999999999999954 3444444322 2345555455554
|
|
| >PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues | Back alignment and domain information |
|---|
Probab=93.60 E-value=0.12 Score=52.66 Aligned_cols=50 Identities=26% Similarity=0.535 Sum_probs=40.3
Q ss_pred CcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhc
Q psy9620 151 SNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFG 210 (453)
Q Consensus 151 ~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~ 210 (453)
.+++++||||||||..+++|.+.... + .+||+=|--||........++.+
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll~~~---------~-s~iV~D~KgEl~~~t~~~r~~~G 94 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLLNYP---------G-SMIVTDPKGELYEKTAGYRKKRG 94 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHHhcc---------C-CEEEEECCCcHHHHHHHHHHHCC
Confidence 47999999999999999999875321 1 38888999999888777777664
|
These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane |
| >TIGR01073 pcrA ATP-dependent DNA helicase PcrA | Back alignment and domain information |
|---|
Probab=93.56 E-value=0.22 Score=53.69 Aligned_cols=71 Identities=18% Similarity=0.163 Sum_probs=51.9
Q ss_pred CCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhc
Q psy9620 134 DRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFG 210 (453)
Q Consensus 134 ~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~ 210 (453)
..+++-|.+++... ..+++|.|..|||||.+..--+...+ ..... ..-++|+++-|+..|..+.+.+.++.
T Consensus 3 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~~l~~ria~Li-~~~~i---~P~~IL~lTFT~kAA~em~~Rl~~~~ 73 (726)
T TIGR01073 3 AHLNPEQREAVKTT--EGPLLIMAGAGSGKTRVLTHRIAHLI-AEKNV---APWNILAITFTNKAAREMKERVEKLL 73 (726)
T ss_pred cccCHHHHHHHhCC--CCCEEEEeCCCCCHHHHHHHHHHHHH-HcCCC---CHHHeeeeeccHHHHHHHHHHHHHHh
Confidence 36899999998753 56899999999999977544433333 22111 12359999999999999999888774
|
Designed to identify pcrA members of the uvrD/rep subfamily. |
| >TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB | Back alignment and domain information |
|---|
Probab=93.48 E-value=0.16 Score=49.47 Aligned_cols=26 Identities=23% Similarity=0.234 Sum_probs=18.8
Q ss_pred cCCcEEEEecCCCcchhhhhHHHHHHh
Q psy9620 149 SGSNMVGVAQTGSGKTLAYMLPAIVHI 175 (453)
Q Consensus 149 ~g~d~li~a~TGsGKT~~~~l~~l~~~ 175 (453)
.+.-+++++|||||||... -.++..+
T Consensus 133 ~~glilI~GpTGSGKTTtL-~aLl~~i 158 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLL-AAIIREL 158 (358)
T ss_pred cCCEEEEECCCCCCHHHHH-HHHHHHH
Confidence 4667899999999999653 3344444
|
Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems. |
| >cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases | Back alignment and domain information |
|---|
Probab=93.38 E-value=0.2 Score=43.94 Aligned_cols=32 Identities=34% Similarity=0.348 Sum_probs=26.1
Q ss_pred CCCHHHHHHHHHHh-cCCcEEEEecCCCcchhh
Q psy9620 135 RPTPIQAQGWPIAM-SGSNMVGVAQTGSGKTLA 166 (453)
Q Consensus 135 ~~~~~Q~~~i~~i~-~g~d~li~a~TGsGKT~~ 166 (453)
.+++.|.+.+.... .+..+++++|||||||..
T Consensus 9 ~~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTl 41 (186)
T cd01130 9 TFSPLQAAYLWLAVEARKNILISGGTGSGKTTL 41 (186)
T ss_pred CCCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 46777888877654 688999999999999965
|
The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase. |
| >PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=93.35 E-value=0.18 Score=49.18 Aligned_cols=23 Identities=30% Similarity=0.267 Sum_probs=17.9
Q ss_pred CCcEEEEecCCCcchhhhhHHHH
Q psy9620 150 GSNMVGVAQTGSGKTLAYMLPAI 172 (453)
Q Consensus 150 g~d~li~a~TGsGKT~~~~l~~l 172 (453)
+..+++++|||+|||.+....+.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~ 159 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAA 159 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 56789999999999987644433
|
|
| >cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion | Back alignment and domain information |
|---|
Probab=93.21 E-value=0.079 Score=52.38 Aligned_cols=48 Identities=27% Similarity=0.397 Sum_probs=37.8
Q ss_pred cEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHh
Q psy9620 152 NMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDF 209 (453)
Q Consensus 152 d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~ 209 (453)
+++++|+||||||.++++|.+... ...+||+=|--|+........++.
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~~----------~~s~vv~D~Kge~~~~t~~~r~~~ 48 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLTW----------PGSVVVLDPKGENFELTSEHRRAL 48 (384)
T ss_pred CeeEecCCCCCCccEEEccchhcC----------CCCEEEEccchhHHHHHHHHHHHc
Confidence 478999999999999999987532 124888899999988776666654
|
These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence. |
| >TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ | Back alignment and domain information |
|---|
Probab=93.18 E-value=0.25 Score=48.26 Aligned_cols=28 Identities=21% Similarity=0.196 Sum_probs=19.7
Q ss_pred cCCcEEEEecCCCcchhhhhHHHHHHhhh
Q psy9620 149 SGSNMVGVAQTGSGKTLAYMLPAIVHINH 177 (453)
Q Consensus 149 ~g~d~li~a~TGsGKT~~~~l~~l~~~~~ 177 (453)
....+++++|||||||.. +..++.++..
T Consensus 148 ~~GlilI~G~TGSGKTT~-l~al~~~i~~ 175 (372)
T TIGR02525 148 AAGLGLICGETGSGKSTL-AASIYQHCGE 175 (372)
T ss_pred cCCEEEEECCCCCCHHHH-HHHHHHHHHh
Confidence 345689999999999964 3455555543
|
Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524). |
| >KOG1016|consensus | Back alignment and domain information |
|---|
Probab=93.15 E-value=0.35 Score=50.24 Aligned_cols=117 Identities=16% Similarity=0.248 Sum_probs=92.2
Q ss_pred CCcEEEEEcchhHHHHHHHHHHhcCC------------------eEEEEcCCCCHHHHHHHHHHHhcC---CCcEEEEec
Q psy9620 300 ENKTIIFAETKRKVDKITKSIQNYGW------------------AAVGIHGDKSQQERDYVLKEFRNG---RAGILVATD 358 (453)
Q Consensus 300 ~~~~lVF~~s~~~~~~l~~~L~~~~~------------------~~~~~h~~~~~~~r~~~~~~f~~g---~~~vLvaT~ 358 (453)
..++|||..+....+.+.+.|.+..+ .-..+.|..+..+|+..+++|.+- ..-+|++|.
T Consensus 719 g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstr 798 (1387)
T KOG1016|consen 719 GEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTR 798 (1387)
T ss_pred CceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhc
Confidence 45899999999998888888876422 223567888999999999999853 246889999
Q ss_pred cCccCCCCCCCcEEEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcCCChHHHHHHH
Q psy9620 359 VAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDLI 416 (453)
Q Consensus 359 ~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~ 416 (453)
.-.-||++-..+.+|.||.-++..-=.|.+-|+-|.|+.-.|+++=.--|....+++.
T Consensus 799 ag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD~~lEkkIy 856 (1387)
T KOG1016|consen 799 AGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMDNSLEKKIY 856 (1387)
T ss_pred cccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhhhhhHHHHH
Confidence 9999999988889999999888888889888999999888888775554444444433
|
|
| >PRK13897 type IV secretion system component VirD4; Provisional | Back alignment and domain information |
|---|
Probab=93.12 E-value=0.16 Score=52.76 Aligned_cols=50 Identities=22% Similarity=0.277 Sum_probs=41.0
Q ss_pred CcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhc
Q psy9620 151 SNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFG 210 (453)
Q Consensus 151 ~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~ 210 (453)
++++++||||||||..+++|.+.... .-+||+=|--|+........++.+
T Consensus 159 ~hvLviapTgSGKg~g~VIPnLL~~~----------~S~VV~DpKGEl~~~Ta~~R~~~G 208 (606)
T PRK13897 159 QHALLFAPTGSGKGVGFVIPNLLFWE----------DSVVVHDIKLENYELTSGWREKQG 208 (606)
T ss_pred ceEEEEcCCCCCcceEEehhhHHhCC----------CCEEEEeCcHHHHHHHHHHHHHCC
Confidence 57899999999999999999987531 238889999999988877777653
|
|
| >KOG0339|consensus | Back alignment and domain information |
|---|
Probab=93.02 E-value=1.3 Score=44.06 Aligned_cols=68 Identities=25% Similarity=0.401 Sum_probs=52.2
Q ss_pred cEEEEEcchhHHHHHHHHHHh----cCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEec--c----CccCCCCCCCcE
Q psy9620 302 KTIIFAETKRKVDKITKSIQN----YGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATD--V----AARGLDVDDVKF 371 (453)
Q Consensus 302 ~~lVF~~s~~~~~~l~~~L~~----~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~--~----~~~GiDip~v~~ 371 (453)
-.+|.|+|++.|.++...-+. .++.++.+|++++..++...++ -..-|+|||+ + --.++|+..|++
T Consensus 298 i~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk----~g~EivVaTPgRlid~VkmKatn~~rvS~ 373 (731)
T KOG0339|consen 298 IGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELK----EGAEIVVATPGRLIDMVKMKATNLSRVSY 373 (731)
T ss_pred eEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhh----cCCeEEEechHHHHHHHHhhcccceeeeE
Confidence 357788999998887766544 4789999999999988877666 3577999997 1 225788888887
Q ss_pred EE
Q psy9620 372 VI 373 (453)
Q Consensus 372 VI 373 (453)
++
T Consensus 374 LV 375 (731)
T KOG0339|consen 374 LV 375 (731)
T ss_pred EE
Confidence 66
|
|
| >PRK13764 ATPase; Provisional | Back alignment and domain information |
|---|
Probab=92.96 E-value=0.21 Score=51.71 Aligned_cols=27 Identities=11% Similarity=0.121 Sum_probs=20.0
Q ss_pred cCCcEEEEecCCCcchhhhhHHHHHHhh
Q psy9620 149 SGSNMVGVAQTGSGKTLAYMLPAIVHIN 176 (453)
Q Consensus 149 ~g~d~li~a~TGsGKT~~~~l~~l~~~~ 176 (453)
..++++++++||||||.. +..++..+.
T Consensus 256 ~~~~ILIsG~TGSGKTTl-l~AL~~~i~ 282 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTF-AQALAEFYA 282 (602)
T ss_pred cCCEEEEECCCCCCHHHH-HHHHHHHHh
Confidence 467899999999999964 344555543
|
|
| >PRK14701 reverse gyrase; Provisional | Back alignment and domain information |
|---|
Probab=92.88 E-value=0.66 Score=53.92 Aligned_cols=61 Identities=25% Similarity=0.327 Sum_probs=54.1
Q ss_pred CCCcEEEEEcchhHHHHHHHHHHhc------CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecc
Q psy9620 299 DENKTIIFAETKRKVDKITKSIQNY------GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDV 359 (453)
Q Consensus 299 ~~~~~lVF~~s~~~~~~l~~~L~~~------~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~ 359 (453)
...++||.+||+.-+.++++.|... +..+..+||+++..++..+++.+++|..+|||+|+-
T Consensus 121 ~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPg 187 (1638)
T PRK14701 121 KGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQ 187 (1638)
T ss_pred cCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCc
Confidence 3458999999999999999998863 466788999999999999999999999999999985
|
|
| >KOG1133|consensus | Back alignment and domain information |
|---|
Probab=92.84 E-value=0.13 Score=52.60 Aligned_cols=43 Identities=23% Similarity=0.278 Sum_probs=35.7
Q ss_pred CCCHHHHHHHHHHh----cCCcEEEEecCCCcchhhhhHHHHHHhhh
Q psy9620 135 RPTPIQAQGWPIAM----SGSNMVGVAQTGSGKTLAYMLPAIVHINH 177 (453)
Q Consensus 135 ~~~~~Q~~~i~~i~----~g~d~li~a~TGsGKT~~~~l~~l~~~~~ 177 (453)
+|+.+|.+.+..+. .|+--|+.+|||+|||++.+-.++..+..
T Consensus 15 ~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaaltWL~~ 61 (821)
T KOG1133|consen 15 TPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAALTWLRD 61 (821)
T ss_pred CchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHHHHHHH
Confidence 79999999887655 68888999999999999887777766544
|
|
| >cd00268 DEADc DEAD-box helicases | Back alignment and domain information |
|---|
Probab=92.84 E-value=0.73 Score=40.78 Aligned_cols=83 Identities=27% Similarity=0.343 Sum_probs=57.2
Q ss_pred HHHHHHhhhcC---CCCcEEEEEcchhHHHHHHHHHHhc----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecc-
Q psy9620 288 LFGLLNDISSK---DENKTIIFAETKRKVDKITKSIQNY----GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDV- 359 (453)
Q Consensus 288 l~~ll~~~~~~---~~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~- 359 (453)
++.++..+... ...++||.|+++..+.+.+..+... +..+..++++.+..+.....+ +...|+|+|.-
T Consensus 54 ~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~iiv~T~~~ 129 (203)
T cd00268 54 LIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLK----RGPHIVVATPGR 129 (203)
T ss_pred HHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhc----CCCCEEEEChHH
Confidence 44455554433 3558999999999998888776654 677888999888766543332 67899999952
Q ss_pred ----Ccc-CCCCCCCcEEEE
Q psy9620 360 ----AAR-GLDVDDVKFVIN 374 (453)
Q Consensus 360 ----~~~-GiDip~v~~VI~ 374 (453)
+.. -.+++++.++|.
T Consensus 130 l~~~l~~~~~~~~~l~~lIv 149 (203)
T cd00268 130 LLDLLERGKLDLSKVKYLVL 149 (203)
T ss_pred HHHHHHcCCCChhhCCEEEE
Confidence 222 256778887764
|
A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region. |
| >KOG1132|consensus | Back alignment and domain information |
|---|
Probab=92.56 E-value=0.44 Score=50.32 Aligned_cols=78 Identities=21% Similarity=0.255 Sum_probs=54.0
Q ss_pred CCCHHHHHHHHHHh----cCCcEEEEecCCCcchhhhhHHHHHHhhhcC-----------C-----CCC-----------
Q psy9620 135 RPTPIQAQGWPIAM----SGSNMVGVAQTGSGKTLAYMLPAIVHINHQS-----------Q-----LKP----------- 183 (453)
Q Consensus 135 ~~~~~Q~~~i~~i~----~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~-----------~-----~~~----------- 183 (453)
+|++.|...+..++ ...+.++..|||+|||++.+-..|....+.. + ..+
T Consensus 21 qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~s~e~ 100 (945)
T KOG1132|consen 21 QPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEKSEEA 100 (945)
T ss_pred CcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCchhhh
Confidence 78999998887766 4678999999999999886655544332211 0 000
Q ss_pred -------CCCcEEEEEcCCHHHHHHHHHHHHHhcCC
Q psy9620 184 -------GDGPIVLVLAPTRELAQQIQEVARDFGSS 212 (453)
Q Consensus 184 -------~~~~~vlil~Ptr~La~q~~~~~~~~~~~ 212 (453)
..-|++.+-+-|..-..|+.+++++.+..
T Consensus 101 ~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~Y~ 136 (945)
T KOG1132|consen 101 GEPIACYTGIPKIYYASRTHSQLTQVVRELRRTGYR 136 (945)
T ss_pred cCccccccCCceEEEecchHHHHHHHHHHHhhcCCC
Confidence 01467777777777778888888887644
|
|
| >KOG1131|consensus | Back alignment and domain information |
|---|
Probab=92.55 E-value=0.71 Score=45.98 Aligned_cols=72 Identities=15% Similarity=0.096 Sum_probs=48.1
Q ss_pred CCCCCHHHHHHHHHHh----cCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHH
Q psy9620 133 FDRPTPIQAQGWPIAM----SGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARD 208 (453)
Q Consensus 133 ~~~~~~~Q~~~i~~i~----~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~ 208 (453)
|...+|-|-+-+..+. .+.++++.+|+|+|||.+.+-.++.+..+.+. .-.+.++.+-|..=.+....+++.
T Consensus 14 Y~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~----~~~KliYCSRTvpEieK~l~El~~ 89 (755)
T KOG1131|consen 14 YDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPD----EHRKLIYCSRTVPEIEKALEELKR 89 (755)
T ss_pred CcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCc----ccceEEEecCcchHHHHHHHHHHH
Confidence 5677888877765443 46689999999999998877666666555442 233566766665555555444443
|
|
| >PRK08181 transposase; Validated | Back alignment and domain information |
|---|
Probab=92.43 E-value=0.41 Score=44.55 Aligned_cols=59 Identities=22% Similarity=0.259 Sum_probs=34.6
Q ss_pred CCHHHHHHHH----HHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHH
Q psy9620 136 PTPIQAQGWP----IAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQ 203 (453)
Q Consensus 136 ~~~~Q~~~i~----~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~ 203 (453)
+.+.|..++. .+..++++++++|+|+|||......+.. +.. .+..|+++ +..+|..++.
T Consensus 88 ~~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~Aia~~-a~~-------~g~~v~f~-~~~~L~~~l~ 150 (269)
T PRK08181 88 VSKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAAIGLA-LIE-------NGWRVLFT-RTTDLVQKLQ 150 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHHHHHH-HHH-------cCCceeee-eHHHHHHHHH
Confidence 4455555553 2336789999999999999654332222 222 23335444 5566666654
|
|
| >COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=92.31 E-value=0.2 Score=47.73 Aligned_cols=42 Identities=21% Similarity=0.169 Sum_probs=30.4
Q ss_pred CCCCCHHHHHHHH-HHhcCCcEEEEecCCCcchhhhhHHHHHHh
Q psy9620 133 FDRPTPIQAQGWP-IAMSGSNMVGVAQTGSGKTLAYMLPAIVHI 175 (453)
Q Consensus 133 ~~~~~~~Q~~~i~-~i~~g~d~li~a~TGsGKT~~~~l~~l~~~ 175 (453)
+..+++.|..-+. ++..+++++++++||||||. ++.+++..+
T Consensus 125 ~gt~~~~~~ayL~~~ie~~~siii~G~t~sGKTt-~lnall~~I 167 (312)
T COG0630 125 YGTISPEQAAYLWLAIEARKSIIICGGTASGKTT-LLNALLDFI 167 (312)
T ss_pred cCCCCHHHHHHHHHHHHcCCcEEEECCCCCCHHH-HHHHHHHhC
Confidence 4457777766554 45578999999999999995 455555544
|
|
| >COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=92.30 E-value=0.2 Score=49.94 Aligned_cols=41 Identities=24% Similarity=0.324 Sum_probs=29.5
Q ss_pred CCHHHHHHHHHHhcCC--cEEEEecCCCcchhhhhHHHHHHhhh
Q psy9620 136 PTPIQAQGWPIAMSGS--NMVGVAQTGSGKTLAYMLPAIVHINH 177 (453)
Q Consensus 136 ~~~~Q~~~i~~i~~g~--d~li~a~TGsGKT~~~~l~~l~~~~~ 177 (453)
+++.|.+.+..+++.. =+|+.+|||||||.+ +..++..++.
T Consensus 242 ~~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTT-LY~~L~~ln~ 284 (500)
T COG2804 242 MSPFQLARLLRLLNRPQGLILVTGPTGSGKTTT-LYAALSELNT 284 (500)
T ss_pred CCHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH-HHHHHHHhcC
Confidence 4778888887777543 367889999999965 4556665544
|
|
| >TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase | Back alignment and domain information |
|---|
Probab=92.03 E-value=0.28 Score=47.41 Aligned_cols=63 Identities=21% Similarity=0.197 Sum_probs=39.0
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHh-cCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHH
Q psy9620 125 LKEVKRQGFDRPTPIQAQGWPIAM-SGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTREL 198 (453)
Q Consensus 125 ~~~l~~~g~~~~~~~Q~~~i~~i~-~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~L 198 (453)
++.+.+.|+ +++.+.+.+..+. .+.+++++++||+|||... -.++..+. ...+.+++-.+.||
T Consensus 154 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ili~G~tGsGKTTll-~al~~~i~--------~~~riv~iEd~~El 217 (340)
T TIGR03819 154 LDELVASGT--FPPGVARLLRAIVAARLAFLISGGTGSGKTTLL-SALLALVA--------PDERIVLVEDAAEL 217 (340)
T ss_pred HHHHHHcCC--CCHHHHHHHHHHHhCCCeEEEECCCCCCHHHHH-HHHHccCC--------CCCcEEEECCccee
Confidence 445555555 5667777776554 5779999999999999542 22222221 12346666666665
|
Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer. |
| >TIGR01420 pilT_fam pilus retraction protein PilT | Back alignment and domain information |
|---|
Probab=91.96 E-value=0.42 Score=46.41 Aligned_cols=43 Identities=21% Similarity=0.251 Sum_probs=26.1
Q ss_pred cCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHH
Q psy9620 149 SGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTREL 198 (453)
Q Consensus 149 ~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~L 198 (453)
.+..+++++|||||||... ..++..+... ...+++.+-...|+
T Consensus 121 ~~g~ili~G~tGSGKTT~l-~al~~~i~~~------~~~~i~tiEdp~E~ 163 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTL-ASMIDYINKN------AAGHIITIEDPIEY 163 (343)
T ss_pred cCcEEEEECCCCCCHHHHH-HHHHHhhCcC------CCCEEEEEcCChhh
Confidence 3567899999999999653 3344433221 23356666555554
|
This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation. |
| >COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
Probab=91.80 E-value=0.97 Score=46.74 Aligned_cols=84 Identities=19% Similarity=0.343 Sum_probs=66.2
Q ss_pred HHHHHHhhhcCCCCcEEEEEcchhHHHHHHHH----HHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecc-Ccc
Q psy9620 288 LFGLLNDISSKDENKTIIFAETKRKVDKITKS----IQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDV-AAR 362 (453)
Q Consensus 288 l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~----L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~-~~~ 362 (453)
++.++..+ ..+.++.+-+||---|++.+.. |...++.+..+.|.+...+|.++++...+|.++|+|.|-+ +..
T Consensus 301 ~laml~ai--~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd 378 (677)
T COG1200 301 LLAMLAAI--EAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQD 378 (677)
T ss_pred HHHHHHHH--HcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhc
Confidence 34444444 2356899999997666555544 5556899999999999999999999999999999999975 457
Q ss_pred CCCCCCCcEEE
Q psy9620 363 GLDVDDVKFVI 373 (453)
Q Consensus 363 GiDip~v~~VI 373 (453)
.+++.+.-+||
T Consensus 379 ~V~F~~LgLVI 389 (677)
T COG1200 379 KVEFHNLGLVI 389 (677)
T ss_pred ceeecceeEEE
Confidence 78888888777
|
|
| >PRK13850 type IV secretion system protein VirD4; Provisional | Back alignment and domain information |
|---|
Probab=91.78 E-value=0.22 Score=52.51 Aligned_cols=49 Identities=20% Similarity=0.300 Sum_probs=38.1
Q ss_pred CcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHh
Q psy9620 151 SNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDF 209 (453)
Q Consensus 151 ~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~ 209 (453)
++++++||||||||..+++|-+.... ..+||+=|--|+........++.
T Consensus 140 ~hvlviApTgSGKgvg~VIPnLL~~~----------gS~VV~DpKGE~~~~Ta~~R~~~ 188 (670)
T PRK13850 140 PHSLVVAPTRAGKGVGVVIPTLLTFK----------GSVIALDVKGELFELTSRARKAS 188 (670)
T ss_pred ceEEEEecCCCCceeeehHhHHhcCC----------CCEEEEeCCchHHHHHHHHHHhC
Confidence 48999999999999999999986431 13788888888877766655554
|
|
| >COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=91.74 E-value=0.33 Score=44.82 Aligned_cols=51 Identities=18% Similarity=0.269 Sum_probs=34.7
Q ss_pred cCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHH
Q psy9620 149 SGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARD 208 (453)
Q Consensus 149 ~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~ 208 (453)
++.++++.+++|+|||..+...... +.. .+. -++++++-+|+.++...+..
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~-l~~-------~g~-sv~f~~~~el~~~Lk~~~~~ 154 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNE-LLK-------AGI-SVLFITAPDLLSKLKAAFDE 154 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHH-HHH-------cCC-eEEEEEHHHHHHHHHHHHhc
Confidence 5789999999999999654333333 322 233 34556888898887776554
|
|
| >TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family | Back alignment and domain information |
|---|
Probab=91.68 E-value=0.29 Score=44.74 Aligned_cols=53 Identities=17% Similarity=0.162 Sum_probs=37.1
Q ss_pred cCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhc
Q psy9620 149 SGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFG 210 (453)
Q Consensus 149 ~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~ 210 (453)
.|..+++.+++|+|||...+--+...+. .+-.+++++ +.+-..|+.+.+..++
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~--------~ge~~lyvs-~ee~~~~i~~~~~~~g 72 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQ--------MGEPGIYVA-LEEHPVQVRRNMAQFG 72 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHH--------cCCcEEEEE-eeCCHHHHHHHHHHhC
Confidence 4678899999999999755443444332 244578877 5567778888887765
|
Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga. |
| >PRK10436 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=91.65 E-value=0.37 Score=48.50 Aligned_cols=39 Identities=28% Similarity=0.376 Sum_probs=25.7
Q ss_pred CCHHHHHHHHHHh--cCCcEEEEecCCCcchhhhhHHHHHHh
Q psy9620 136 PTPIQAQGWPIAM--SGSNMVGVAQTGSGKTLAYMLPAIVHI 175 (453)
Q Consensus 136 ~~~~Q~~~i~~i~--~g~d~li~a~TGsGKT~~~~l~~l~~~ 175 (453)
+.+.|.+.+..++ ...-+|+++|||||||.+. ..++..+
T Consensus 202 ~~~~~~~~l~~~~~~~~GliLvtGpTGSGKTTtL-~a~l~~~ 242 (462)
T PRK10436 202 MTPAQLAQFRQALQQPQGLILVTGPTGSGKTVTL-YSALQTL 242 (462)
T ss_pred cCHHHHHHHHHHHHhcCCeEEEECCCCCChHHHH-HHHHHhh
Confidence 3455666665554 3446889999999999753 4455554
|
|
| >PRK12727 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=91.50 E-value=18 Score=37.05 Aligned_cols=21 Identities=33% Similarity=0.395 Sum_probs=16.7
Q ss_pred cCCcEEEEecCCCcchhhhhH
Q psy9620 149 SGSNMVGVAQTGSGKTLAYML 169 (453)
Q Consensus 149 ~g~d~li~a~TGsGKT~~~~l 169 (453)
.++.+++++|||+|||.....
T Consensus 349 ~G~vIaLVGPtGvGKTTtaak 369 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAK 369 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 456788999999999976543
|
|
| >KOG0338|consensus | Back alignment and domain information |
|---|
Probab=91.48 E-value=1.4 Score=43.87 Aligned_cols=70 Identities=13% Similarity=0.259 Sum_probs=55.9
Q ss_pred CcEEEEEcchhHHHHHHHHHHhc----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecc-------CccCCCCCCC
Q psy9620 301 NKTIIFAETKRKVDKITKSIQNY----GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDV-------AARGLDVDDV 369 (453)
Q Consensus 301 ~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~-------~~~GiDip~v 369 (453)
-++||.|+|++-+-+++...++. .+.+...-|+++-..++.+++. ..+|+|||+= -+.++|+.++
T Consensus 253 TRVLVL~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs----~PDIVIATPGRlIDHlrNs~sf~ldsi 328 (691)
T KOG0338|consen 253 TRVLVLVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRS----RPDIVIATPGRLIDHLRNSPSFNLDSI 328 (691)
T ss_pred eeEEEEeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhh----CCCEEEecchhHHHHhccCCCccccce
Confidence 48999999999988877776553 6788888999999999888876 6789999982 3467777777
Q ss_pred cEEEE
Q psy9620 370 KFVIN 374 (453)
Q Consensus 370 ~~VI~ 374 (453)
.++|.
T Consensus 329 EVLvl 333 (691)
T KOG0338|consen 329 EVLVL 333 (691)
T ss_pred eEEEe
Confidence 77665
|
|
| >PRK05973 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=91.46 E-value=0.56 Score=42.71 Aligned_cols=66 Identities=21% Similarity=0.276 Sum_probs=40.2
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhc
Q psy9620 135 RPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFG 210 (453)
Q Consensus 135 ~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~ 210 (453)
.++|.. +..--+..|.-++|.|++|+|||...+--+...+. .+..++|++- -+-..|+.+.+..++
T Consensus 50 ~~~p~~-~l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~--------~Ge~vlyfSl-Ees~~~i~~R~~s~g 115 (237)
T PRK05973 50 ATTPAE-ELFSQLKPGDLVLLGARPGHGKTLLGLELAVEAMK--------SGRTGVFFTL-EYTEQDVRDRLRALG 115 (237)
T ss_pred CCCCHH-HhcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHh--------cCCeEEEEEE-eCCHHHHHHHHHHcC
Confidence 455532 23334456778899999999999655443433332 2344777753 334677777777763
|
|
| >COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.41 E-value=0.12 Score=48.33 Aligned_cols=21 Identities=48% Similarity=0.578 Sum_probs=17.1
Q ss_pred hcCCcEEEEecCCCcchhhhh
Q psy9620 148 MSGSNMVGVAQTGSGKTLAYM 168 (453)
Q Consensus 148 ~~g~d~li~a~TGsGKT~~~~ 168 (453)
++..|+++++|||||||+.+.
T Consensus 95 L~KSNILLiGPTGsGKTlLAq 115 (408)
T COG1219 95 LSKSNILLIGPTGSGKTLLAQ 115 (408)
T ss_pred eeeccEEEECCCCCcHHHHHH
Confidence 355689999999999997553
|
|
| >TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI | Back alignment and domain information |
|---|
Probab=91.38 E-value=6.4 Score=47.20 Aligned_cols=63 Identities=13% Similarity=0.206 Sum_probs=46.5
Q ss_pred CCCHHHHHHHHHHhcC--CcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHH
Q psy9620 135 RPTPIQAQGWPIAMSG--SNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEV 205 (453)
Q Consensus 135 ~~~~~Q~~~i~~i~~g--~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~ 205 (453)
.+++-|.+++..++.. +-.+++++.|+|||.+ +-.+..+... .+..+++++||-.-+.++.+.
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~--l~~l~~~~~~------~G~~V~~lAPTgrAA~~L~e~ 493 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEI--AQLLLHLASE------QGYEIQIITAGSLSAQELRQK 493 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHH--HHHHHHHHHh------cCCeEEEEeCCHHHHHHHHHH
Confidence 5889999999998865 5678899999999954 2333333322 366799999998877766554
|
This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein. |
| >PRK13826 Dtr system oriT relaxase; Provisional | Back alignment and domain information |
|---|
Probab=91.30 E-value=1.1 Score=49.66 Aligned_cols=62 Identities=19% Similarity=0.092 Sum_probs=45.7
Q ss_pred CCCHHHHHHHHHHhc-CCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHH
Q psy9620 135 RPTPIQAQGWPIAMS-GSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQE 204 (453)
Q Consensus 135 ~~~~~Q~~~i~~i~~-g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~ 204 (453)
.+++-|.+++..+.. ++-++++++.|+|||.+. -++...+.. .+..++.++||---+..+.+
T Consensus 381 ~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l-~~~~~~~e~-------~G~~V~g~ApTgkAA~~L~e 443 (1102)
T PRK13826 381 RLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMM-KAAREAWEA-------AGYRVVGGALAGKAAEGLEK 443 (1102)
T ss_pred CCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHH-HHHHHHHHH-------cCCeEEEEcCcHHHHHHHHH
Confidence 799999999998864 556789999999999542 233333322 36679999999887776644
|
|
| >KOG0331|consensus | Back alignment and domain information |
|---|
Probab=91.16 E-value=1.6 Score=44.06 Aligned_cols=90 Identities=13% Similarity=0.294 Sum_probs=67.5
Q ss_pred CCcEEEEEcchhHHHHHHHHHHhc----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEec-----cCccC-CCCCCC
Q psy9620 300 ENKTIIFAETKRKVDKITKSIQNY----GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATD-----VAARG-LDVDDV 369 (453)
Q Consensus 300 ~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~~G-iDip~v 369 (453)
...+||.++|++-|..+...+... .+.+.+++|+.+...+..-+++ -+.|+|||. .+..| +|+..|
T Consensus 165 ~P~vLVL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~----gvdiviaTPGRl~d~le~g~~~l~~v 240 (519)
T KOG0331|consen 165 GPIVLVLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLER----GVDVVIATPGRLIDLLEEGSLNLSRV 240 (519)
T ss_pred CCeEEEEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhc----CCcEEEeCChHHHHHHHcCCccccce
Confidence 346999999999999999988765 4558889999887766555443 578999996 45555 788899
Q ss_pred cEEEE--------cCCCCChhHHHHhhhcccC
Q psy9620 370 KFVIN--------FDYPNNSEDYIHRIGRTGR 393 (453)
Q Consensus 370 ~~VI~--------~d~p~s~~~y~qr~GRagR 393 (453)
+++|. .++-..+...++.+.|.-|
T Consensus 241 ~ylVLDEADrMldmGFe~qI~~Il~~i~~~~r 272 (519)
T KOG0331|consen 241 TYLVLDEADRMLDMGFEPQIRKILSQIPRPDR 272 (519)
T ss_pred eEEEeccHHhhhccccHHHHHHHHHhcCCCcc
Confidence 98873 3344456777777777666
|
|
| >COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
Probab=90.90 E-value=1 Score=49.40 Aligned_cols=75 Identities=15% Similarity=0.271 Sum_probs=65.5
Q ss_pred CCCcEEEEEcchhHHHHHHHHHHhc----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEec-cCccCCCCCCCcEEE
Q psy9620 299 DENKTIIFAETKRKVDKITKSIQNY----GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATD-VAARGLDVDDVKFVI 373 (453)
Q Consensus 299 ~~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~-~~~~GiDip~v~~VI 373 (453)
..+++.|.|||---|++-++.|++. .+.|..+.--.+..|..++++..++|+++|||.|- .+...|-+.|.-+||
T Consensus 642 ~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL~kdv~FkdLGLlI 721 (1139)
T COG1197 642 DGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLLSKDVKFKDLGLLI 721 (1139)
T ss_pred CCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhhCCCcEEecCCeEE
Confidence 3578999999999888888887764 56677888889999999999999999999999995 778889999999888
|
|
| >COG3421 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=90.86 E-value=1.4 Score=44.81 Aligned_cols=57 Identities=18% Similarity=0.214 Sum_probs=33.9
Q ss_pred HHHHHHHHHh--cCCCcEEEEeccCccCCCCCCCcEEEEcC------CCCC----hhHHHHhhhcccCC
Q psy9620 338 ERDYVLKEFR--NGRAGILVATDVAARGLDVDDVKFVINFD------YPNN----SEDYIHRIGRTGRS 394 (453)
Q Consensus 338 ~r~~~~~~f~--~g~~~vLvaT~~~~~GiDip~v~~VI~~d------~p~s----~~~y~qr~GRagR~ 394 (453)
+-+..++.+. +..++++++.|.+-+|.|+-+.--|=-++ -... ...=.|-+||..|.
T Consensus 316 e~~lllnsled~dnpir~if~vd~lnegwdvlnlfdmr~i~rrk~~an~kk~~~~TikekQLIGRGaRY 384 (812)
T COG3421 316 ESMLLLNSLEDRDNPIRVIFSVDKLNEGWDVLNLFDMRGIKRRKKMANDKKLAAATIKEKQLIGRGARY 384 (812)
T ss_pred HHHHHHhhhhhcCCCeEEEEEeecccccchhhhhhhHHHHHHHHhhhcccchhhhhhhHHHHHhcccee
Confidence 3344455543 57899999999999999874321100000 0111 22337899998885
|
|
| >cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP) | Back alignment and domain information |
|---|
Probab=90.85 E-value=0.49 Score=44.03 Aligned_cols=38 Identities=21% Similarity=0.285 Sum_probs=24.2
Q ss_pred CHHHHHHHHHHhc--CCcEEEEecCCCcchhhhhHHHHHHh
Q psy9620 137 TPIQAQGWPIAMS--GSNMVGVAQTGSGKTLAYMLPAIVHI 175 (453)
Q Consensus 137 ~~~Q~~~i~~i~~--g~d~li~a~TGsGKT~~~~l~~l~~~ 175 (453)
.+.|.+.+..++. +..++++++||||||... ..++..+
T Consensus 65 ~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l-~all~~i 104 (264)
T cd01129 65 KPENLEIFRKLLEKPHGIILVTGPTGSGKTTTL-YSALSEL 104 (264)
T ss_pred CHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHH-HHHHhhh
Confidence 4446666655443 345889999999999653 3344444
|
It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB. |
| >TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family | Back alignment and domain information |
|---|
Probab=90.80 E-value=0.91 Score=46.20 Aligned_cols=59 Identities=15% Similarity=0.323 Sum_probs=55.2
Q ss_pred CCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEec
Q psy9620 300 ENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATD 358 (453)
Q Consensus 300 ~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~ 358 (453)
.+.+||.+|+++-+.+..+.|...++.+..++++.+..++..++..+..++.+||++|+
T Consensus 51 ~~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TP 109 (470)
T TIGR00614 51 DGITLVISPLISLMEDQVLQLKASGIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTP 109 (470)
T ss_pred CCcEEEEecHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 45799999999999999999999999999999999999999999999999999999997
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical | Back alignment and domain information |
|---|
Probab=90.73 E-value=0.33 Score=43.99 Aligned_cols=54 Identities=26% Similarity=0.312 Sum_probs=34.8
Q ss_pred cCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhc
Q psy9620 149 SGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFG 210 (453)
Q Consensus 149 ~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~ 210 (453)
.|..+++.+++|+|||...+--+...+... +-.+++++ +.+-..++.+.+..++
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~-------ge~vlyvs-~ee~~~~l~~~~~s~g 71 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNF-------GEKVLYVS-FEEPPEELIENMKSFG 71 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHH-------T--EEEEE-SSS-HHHHHHHHHTTT
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhc-------CCcEEEEE-ecCCHHHHHHHHHHcC
Confidence 467889999999999966544444444430 22377776 4555677777777764
|
More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C .... |
| >PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging [] | Back alignment and domain information |
|---|
Probab=90.67 E-value=1.1 Score=41.82 Aligned_cols=41 Identities=22% Similarity=0.375 Sum_probs=25.7
Q ss_pred EEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHH
Q psy9620 153 MVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELA 199 (453)
Q Consensus 153 ~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La 199 (453)
.+|.+||||||+- +|..+.....+.+ ..-.|++|+|++...
T Consensus 90 ~~VYGPTG~GKSq-----LlRNLis~~lI~P-~PETVfFItP~~~mI 130 (369)
T PF02456_consen 90 GVVYGPTGSGKSQ-----LLRNLISCQLIQP-PPETVFFITPQKDMI 130 (369)
T ss_pred EEEECCCCCCHHH-----HHHHhhhcCcccC-CCCceEEECCCCCCC
Confidence 4678999999993 2333433332222 233589999988753
|
During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription |
| >PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ] | Back alignment and domain information |
|---|
Probab=90.60 E-value=0.28 Score=45.88 Aligned_cols=43 Identities=23% Similarity=0.267 Sum_probs=28.0
Q ss_pred hcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHH
Q psy9620 148 MSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTREL 198 (453)
Q Consensus 148 ~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~L 198 (453)
..+.+++++|+||||||... ..++..+... ..+++++-.+.|+
T Consensus 125 ~~~~~ili~G~tGSGKTT~l-~all~~i~~~-------~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 125 RGRGNILISGPTGSGKTTLL-NALLEEIPPE-------DERIVTIEDPPEL 167 (270)
T ss_dssp HTTEEEEEEESTTSSHHHHH-HHHHHHCHTT-------TSEEEEEESSS-S
T ss_pred ccceEEEEECCCccccchHH-HHHhhhcccc-------ccceEEeccccce
Confidence 45789999999999999653 4445444322 2456777666665
|
These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B .... |
| >cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs | Back alignment and domain information |
|---|
Probab=90.59 E-value=0.47 Score=41.38 Aligned_cols=49 Identities=20% Similarity=0.202 Sum_probs=32.7
Q ss_pred EEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhc
Q psy9620 153 MVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFG 210 (453)
Q Consensus 153 ~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~ 210 (453)
+++.+++|+|||...+--+...+. .+..+++++. .+...++.+.+..++
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~--------~g~~v~~~s~-e~~~~~~~~~~~~~g 50 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLA--------RGEPGLYVTL-EESPEELIENAESLG 50 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH--------CCCcEEEEEC-CCCHHHHHHHHHHcC
Confidence 689999999999755433333332 2445777754 466778777777763
|
A related protein is found in archaea. |
| >PRK13876 conjugal transfer coupling protein TraG; Provisional | Back alignment and domain information |
|---|
Probab=90.51 E-value=0.34 Score=50.96 Aligned_cols=50 Identities=20% Similarity=0.207 Sum_probs=38.9
Q ss_pred CCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHh
Q psy9620 150 GSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDF 209 (453)
Q Consensus 150 g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~ 209 (453)
..++++.||||||||..+++|-|.... ..+||+=|--|+........++.
T Consensus 144 ~~hvLviApTrSGKgvg~VIPnLL~~~----------~S~VV~D~KGEl~~~Ta~~R~~~ 193 (663)
T PRK13876 144 PEHVLCFAPTRSGKGVGLVVPTLLTWP----------GSAIVHDIKGENWQLTAGFRARF 193 (663)
T ss_pred CceEEEEecCCCCcceeEehhhHHhCC----------CCEEEEeCcchHHHHHHHHHHhC
Confidence 368999999999999999999986532 13788888888877766655554
|
|
| >PRK05707 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=90.49 E-value=1.9 Score=41.48 Aligned_cols=86 Identities=19% Similarity=0.155 Sum_probs=51.3
Q ss_pred CCCHHHHHHHHHHhcC----CcEEEEecCCCcchhhhhHHHHHHhhhcCC-------------CCCCCCcEEEEEcCCH-
Q psy9620 135 RPTPIQAQGWPIAMSG----SNMVGVAQTGSGKTLAYMLPAIVHINHQSQ-------------LKPGDGPIVLVLAPTR- 196 (453)
Q Consensus 135 ~~~~~Q~~~i~~i~~g----~d~li~a~TGsGKT~~~~l~~l~~~~~~~~-------------~~~~~~~~vlil~Ptr- 196 (453)
.++|+|...|..+... +-+|+++|.|.|||..+..-+-..+...+. ...++.|.+.++.|..
T Consensus 3 ~~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~ 82 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA 82 (328)
T ss_pred cCCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC
Confidence 3579999999887743 358899999999996654433222222111 1123567788888842
Q ss_pred ---HHHHHHHHHHHHhcC---CCCceEEEE
Q psy9620 197 ---ELAQQIQEVARDFGS---STYLRSTCV 220 (453)
Q Consensus 197 ---~La~q~~~~~~~~~~---~~~~~~~~~ 220 (453)
.-++|+.+....+.. ..+.++..+
T Consensus 83 ~~~i~id~iR~l~~~~~~~~~~~~~kv~iI 112 (328)
T PRK05707 83 DKTIKVDQVRELVSFVVQTAQLGGRKVVLI 112 (328)
T ss_pred CCCCCHHHHHHHHHHHhhccccCCCeEEEE
Confidence 345666665444432 234455544
|
|
| >PRK08769 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=90.44 E-value=1.8 Score=41.32 Aligned_cols=89 Identities=17% Similarity=0.277 Sum_probs=51.2
Q ss_pred CCCCCHHHHHHHHHHh----cCC---cEEEEecCCCcchhhhhHHHHHHhhhcC-C----------CCCCCCcEEEEE--
Q psy9620 133 FDRPTPIQAQGWPIAM----SGS---NMVGVAQTGSGKTLAYMLPAIVHINHQS-Q----------LKPGDGPIVLVL-- 192 (453)
Q Consensus 133 ~~~~~~~Q~~~i~~i~----~g~---d~li~a~TGsGKT~~~~l~~l~~~~~~~-~----------~~~~~~~~vlil-- 192 (453)
+..++|+|..+|..+. +++ -+|+.+|.|.||+..+..-+ ..+.-.. . ...++.|...++
T Consensus 2 ~~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA-~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~ 80 (319)
T PRK08769 2 TSAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALA-EHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSF 80 (319)
T ss_pred CccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHH-HHHhCCCCCCCCcchHHHHHhcCCCCCEEEEec
Confidence 3468899999998766 333 58999999999996654322 2222211 1 112456777777
Q ss_pred cCCH--------HHHHHHHHHHHHhcC---CCCceEEEEeC
Q psy9620 193 APTR--------ELAQQIQEVARDFGS---STYLRSTCVYG 222 (453)
Q Consensus 193 ~Ptr--------~La~q~~~~~~~~~~---~~~~~~~~~~g 222 (453)
.|.. ..++|+.+....+.. ..+.+++++..
T Consensus 81 ~p~~~~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ 121 (319)
T PRK08769 81 IPNRTGDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDP 121 (319)
T ss_pred CCCcccccccccccHHHHHHHHHHHhhCcccCCcEEEEecc
Confidence 6742 235565555444421 12345555443
|
|
| >COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=90.43 E-value=0.24 Score=45.06 Aligned_cols=15 Identities=40% Similarity=0.508 Sum_probs=12.8
Q ss_pred cEEEEecCCCcchhh
Q psy9620 152 NMVGVAQTGSGKTLA 166 (453)
Q Consensus 152 d~li~a~TGsGKT~~ 166 (453)
=+|++++|||||+.+
T Consensus 129 LviiVGaTGSGKSTt 143 (375)
T COG5008 129 LVIIVGATGSGKSTT 143 (375)
T ss_pred eEEEECCCCCCchhh
Confidence 367889999999965
|
|
| >PRK10590 ATP-dependent RNA helicase RhlE; Provisional | Back alignment and domain information |
|---|
Probab=90.38 E-value=1.9 Score=43.76 Aligned_cols=69 Identities=20% Similarity=0.384 Sum_probs=51.6
Q ss_pred cEEEEEcchhHHHHHHHHHHhc----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEec------cCccCCCCCCCcE
Q psy9620 302 KTIIFAETKRKVDKITKSIQNY----GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATD------VAARGLDVDDVKF 371 (453)
Q Consensus 302 ~~lVF~~s~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~------~~~~GiDip~v~~ 371 (453)
++||.++|++-|.++.+.+... ++.+..++++.+..++...+ .+..+|||||. .....+++..+.+
T Consensus 77 ~aLil~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l----~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~ 152 (456)
T PRK10590 77 RALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL----RGGVDVLVATPGRLLDLEHQNAVKLDQVEI 152 (456)
T ss_pred eEEEEeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHH----cCCCcEEEEChHHHHHHHHcCCcccccceE
Confidence 6999999999999988887753 56778889988866543322 35789999996 1234567888887
Q ss_pred EEE
Q psy9620 372 VIN 374 (453)
Q Consensus 372 VI~ 374 (453)
||.
T Consensus 153 lVi 155 (456)
T PRK10590 153 LVL 155 (456)
T ss_pred EEe
Confidence 764
|
|
| >PRK04537 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=90.34 E-value=1.2 Score=46.54 Aligned_cols=70 Identities=14% Similarity=0.246 Sum_probs=51.8
Q ss_pred CcEEEEEcchhHHHHHHHHHHhc----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEec-----cCcc--CCCCCCC
Q psy9620 301 NKTIIFAETKRKVDKITKSIQNY----GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATD-----VAAR--GLDVDDV 369 (453)
Q Consensus 301 ~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~~--GiDip~v 369 (453)
.++||.++|++-|.++++.+... ++.+..+||+.+...+...++ ...+|||+|. .+.. .+++..+
T Consensus 85 ~raLIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~----~~~dIiV~TP~rL~~~l~~~~~~~l~~v 160 (572)
T PRK04537 85 PRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQ----QGVDVIIATPGRLIDYVKQHKVVSLHAC 160 (572)
T ss_pred ceEEEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHh----CCCCEEEECHHHHHHHHHhccccchhhe
Confidence 58999999999999998887653 677889999988766554443 4678999995 2222 3667777
Q ss_pred cEEEE
Q psy9620 370 KFVIN 374 (453)
Q Consensus 370 ~~VI~ 374 (453)
.+||.
T Consensus 161 ~~lVi 165 (572)
T PRK04537 161 EICVL 165 (572)
T ss_pred eeeEe
Confidence 76653
|
|
| >KOG1805|consensus | Back alignment and domain information |
|---|
Probab=90.29 E-value=2 Score=46.11 Aligned_cols=81 Identities=21% Similarity=0.126 Sum_probs=55.8
Q ss_pred ccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCc-EEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCC
Q psy9620 117 EANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSN-MVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPT 195 (453)
Q Consensus 117 ~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d-~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt 195 (453)
...+.+.+.+. -+..++..|++|+..++.-+| .+|.+=+|+|||.+.... +..+.. .+.+||+.+-|
T Consensus 655 ~~~~~p~~~~~----~~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~L-IkiL~~-------~gkkVLLtsyT 722 (1100)
T KOG1805|consen 655 SKVLIPKIKKI----ILLRLNNDQRQALLKALAAEDYALILGMPGTGKTTTISLL-IKILVA-------LGKKVLLTSYT 722 (1100)
T ss_pred ccccCchhhHH----HHhhcCHHHHHHHHHHHhccchheeecCCCCCchhhHHHH-HHHHHH-------cCCeEEEEehh
Confidence 34455555553 244789999999999887666 577899999999764322 222222 36679999999
Q ss_pred HHHHHHHHHHHHHh
Q psy9620 196 RELAQQIQEVARDF 209 (453)
Q Consensus 196 r~La~q~~~~~~~~ 209 (453)
..-+..+.-.++.+
T Consensus 723 hsAVDNILiKL~~~ 736 (1100)
T KOG1805|consen 723 HSAVDNILIKLKGF 736 (1100)
T ss_pred hHHHHHHHHHHhcc
Confidence 88777776666654
|
|
| >PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=90.24 E-value=17 Score=35.87 Aligned_cols=21 Identities=29% Similarity=0.306 Sum_probs=16.3
Q ss_pred CcEEEEecCCCcchhhhhHHH
Q psy9620 151 SNMVGVAQTGSGKTLAYMLPA 171 (453)
Q Consensus 151 ~d~li~a~TGsGKT~~~~l~~ 171 (453)
+.+++++|||+|||......+
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA 262 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMA 262 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHH
Confidence 467899999999997754433
|
|
| >PRK13880 conjugal transfer coupling protein TraG; Provisional | Back alignment and domain information |
|---|
Probab=90.23 E-value=0.47 Score=49.96 Aligned_cols=46 Identities=20% Similarity=0.247 Sum_probs=36.4
Q ss_pred CcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHH
Q psy9620 151 SNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVA 206 (453)
Q Consensus 151 ~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~ 206 (453)
++++++||||||||..+++|.|... +..+||+=|--|+........
T Consensus 176 ~HvlviapTgSGKgvg~ViPnLL~~----------~~S~VV~D~KGE~~~~Tag~R 221 (636)
T PRK13880 176 EHVLTYAPTRSGKGVGLVVPTLLSW----------GHSSVITDLKGELWALTAGWR 221 (636)
T ss_pred ceEEEEecCCCCCceEEEccchhhC----------CCCEEEEeCcHHHHHHHHHHH
Confidence 5799999999999999999998642 223888889999876655544
|
|
| >TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB | Back alignment and domain information |
|---|
Probab=90.18 E-value=0.36 Score=50.17 Aligned_cols=44 Identities=27% Similarity=0.386 Sum_probs=28.8
Q ss_pred HHHCCCCCCCHHHHHHHHHHhc--CCcEEEEecCCCcchhhhhHHHHHHh
Q psy9620 128 VKRQGFDRPTPIQAQGWPIAMS--GSNMVGVAQTGSGKTLAYMLPAIVHI 175 (453)
Q Consensus 128 l~~~g~~~~~~~Q~~~i~~i~~--g~d~li~a~TGsGKT~~~~l~~l~~~ 175 (453)
+.++|| .+.|.+.+..++. ..-+++++|||||||.+. ..++..+
T Consensus 295 l~~lg~---~~~~~~~l~~~~~~~~Glilv~G~tGSGKTTtl-~a~l~~~ 340 (564)
T TIGR02538 295 IDKLGF---EPDQKALFLEAIHKPQGMVLVTGPTGSGKTVSL-YTALNIL 340 (564)
T ss_pred HHHcCC---CHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHH-HHHHHhh
Confidence 444554 5566667766553 345789999999999763 4455544
|
This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems. |
| >TIGR01054 rgy reverse gyrase | Back alignment and domain information |
|---|
Probab=90.13 E-value=1.1 Score=50.69 Aligned_cols=60 Identities=20% Similarity=0.302 Sum_probs=51.3
Q ss_pred CCcEEEEEcchhHHHHHHHHHHhc----CCe---EEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecc
Q psy9620 300 ENKTIIFAETKRKVDKITKSIQNY----GWA---AVGIHGDKSQQERDYVLKEFRNGRAGILVATDV 359 (453)
Q Consensus 300 ~~~~lVF~~s~~~~~~l~~~L~~~----~~~---~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~ 359 (453)
..++||.+||+.-|.++++.|... ++. +..+||+++..++...++.+.++..+|||+|+-
T Consensus 121 g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~ 187 (1171)
T TIGR01054 121 GKRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTM 187 (1171)
T ss_pred CCeEEEEeCHHHHHHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHH
Confidence 568999999999999998888754 333 335899999999999999999999999999974
|
Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA. |
| >KOG0347|consensus | Back alignment and domain information |
|---|
Probab=90.12 E-value=0.69 Score=46.39 Aligned_cols=67 Identities=18% Similarity=0.327 Sum_probs=54.6
Q ss_pred EEEEEcchhHHHHHHHHHHhc----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecc-----CccC-C---CCCCC
Q psy9620 303 TIIFAETKRKVDKITKSIQNY----GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDV-----AARG-L---DVDDV 369 (453)
Q Consensus 303 ~lVF~~s~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~-----~~~G-i---Dip~v 369 (453)
.|||++|++-|-++.+.|... ++.+..+.|+|....++.+++. ...|+|||+= +..+ . ++.++
T Consensus 266 ~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~----~p~IVVATPGRlweli~e~n~~l~~~k~v 341 (731)
T KOG0347|consen 266 ALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQ----RPDIVVATPGRLWELIEEDNTHLGNFKKV 341 (731)
T ss_pred eEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhc----CCCEEEecchHHHHHHHhhhhhhhhhhhc
Confidence 899999999999999998764 7899999999999999998888 7789999982 2222 1 45677
Q ss_pred cEEE
Q psy9620 370 KFVI 373 (453)
Q Consensus 370 ~~VI 373 (453)
+++|
T Consensus 342 kcLV 345 (731)
T KOG0347|consen 342 KCLV 345 (731)
T ss_pred eEEE
Confidence 7665
|
|
| >PRK06526 transposase; Provisional | Back alignment and domain information |
|---|
Probab=90.06 E-value=0.38 Score=44.41 Aligned_cols=24 Identities=25% Similarity=0.220 Sum_probs=19.0
Q ss_pred HhcCCcEEEEecCCCcchhhhhHH
Q psy9620 147 AMSGSNMVGVAQTGSGKTLAYMLP 170 (453)
Q Consensus 147 i~~g~d~li~a~TGsGKT~~~~l~ 170 (453)
+..++++++++|+|+|||......
T Consensus 95 i~~~~nlll~Gp~GtGKThLa~al 118 (254)
T PRK06526 95 VTGKENVVFLGPPGTGKTHLAIGL 118 (254)
T ss_pred hhcCceEEEEeCCCCchHHHHHHH
Confidence 346789999999999999765443
|
|
| >PRK06835 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
Probab=90.03 E-value=1 Score=43.35 Aligned_cols=46 Identities=22% Similarity=0.279 Sum_probs=27.9
Q ss_pred cCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHH
Q psy9620 149 SGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQ 203 (453)
Q Consensus 149 ~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~ 203 (453)
.+.++++.|+||+|||..... +...+.. .+..|+++ +..+|..++.
T Consensus 182 ~~~~Lll~G~~GtGKThLa~a-Ia~~l~~-------~g~~V~y~-t~~~l~~~l~ 227 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLSNC-IAKELLD-------RGKSVIYR-TADELIEILR 227 (329)
T ss_pred cCCcEEEECCCCCcHHHHHHH-HHHHHHH-------CCCeEEEE-EHHHHHHHHH
Confidence 357899999999999964332 2333332 24445554 5556655543
|
|
| >PRK13822 conjugal transfer coupling protein TraG; Provisional | Back alignment and domain information |
|---|
Probab=89.97 E-value=0.41 Score=50.27 Aligned_cols=50 Identities=28% Similarity=0.393 Sum_probs=38.8
Q ss_pred CCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHh
Q psy9620 150 GSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDF 209 (453)
Q Consensus 150 g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~ 209 (453)
..++++.||||+|||..+++|.+... +.-+||+=|--|+........++.
T Consensus 224 ~~H~Lv~ApTgsGKt~g~VIPnLL~~----------~gS~VV~DpKgEl~~~Ta~~R~~~ 273 (641)
T PRK13822 224 STHGLVFAGSGGFKTTSVVVPTALKW----------GGPLVVLDPSTEVAPMVSEHRRDA 273 (641)
T ss_pred CceEEEEeCCCCCccceEehhhhhcC----------CCCEEEEeCcHHHHHHHHHHHHHC
Confidence 35789999999999999999987532 223788889999988776665554
|
|
| >PRK11776 ATP-dependent RNA helicase DbpA; Provisional | Back alignment and domain information |
|---|
Probab=89.90 E-value=1.3 Score=44.98 Aligned_cols=70 Identities=19% Similarity=0.265 Sum_probs=53.5
Q ss_pred CcEEEEEcchhHHHHHHHHHHhc-----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEec-----cCc-cCCCCCCC
Q psy9620 301 NKTIIFAETKRKVDKITKSIQNY-----GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATD-----VAA-RGLDVDDV 369 (453)
Q Consensus 301 ~~~lVF~~s~~~~~~l~~~L~~~-----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~-~GiDip~v 369 (453)
.++||.|+|++-|.++++.++.. ++.+..++|+.+...+...++ ...+|+|+|. .+. ..+++.++
T Consensus 73 ~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~----~~~~IvV~Tp~rl~~~l~~~~~~l~~l 148 (460)
T PRK11776 73 VQALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLE----HGAHIIVGTPGRILDHLRKGTLDLDAL 148 (460)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhc----CCCCEEEEChHHHHHHHHcCCccHHHC
Confidence 37999999999999999887753 578888999998766654443 5688999994 232 35778888
Q ss_pred cEEEE
Q psy9620 370 KFVIN 374 (453)
Q Consensus 370 ~~VI~ 374 (453)
.+||.
T Consensus 149 ~~lVi 153 (460)
T PRK11776 149 NTLVL 153 (460)
T ss_pred CEEEE
Confidence 88774
|
|
| >COG3587 Restriction endonuclease [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=89.82 E-value=0.58 Score=49.32 Aligned_cols=52 Identities=15% Similarity=0.241 Sum_probs=0.0
Q ss_pred cEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHh
Q psy9620 152 NMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDF 209 (453)
Q Consensus 152 d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~ 209 (453)
++=|.+.||+|||.||+-.|+..=..- .-.+-||+|||.+.-+-+...++..
T Consensus 76 NiDI~METGTGKTy~YlrtmfeLhk~Y------G~~KFIivVPs~AIkeGv~~~s~~~ 127 (985)
T COG3587 76 NIDILMETGTGKTYTYLRTMFELHKKY------GLFKFIIVVPSLAIKEGVFLTSKET 127 (985)
T ss_pred eeeEEEecCCCceeeHHHHHHHHHHHh------CceeEEEEeccHHHHhhhHHHHHHH
|
|
| >PRK06921 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=89.70 E-value=2 Score=39.95 Aligned_cols=47 Identities=23% Similarity=0.251 Sum_probs=27.5
Q ss_pred CCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHH
Q psy9620 150 GSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQE 204 (453)
Q Consensus 150 g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~ 204 (453)
+.++++.+++|+|||.... .+...+... .+..|+++. ..++..++..
T Consensus 117 ~~~l~l~G~~G~GKThLa~-aia~~l~~~------~g~~v~y~~-~~~l~~~l~~ 163 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLT-AAANELMRK------KGVPVLYFP-FVEGFGDLKD 163 (266)
T ss_pred CCeEEEECCCCCcHHHHHH-HHHHHHhhh------cCceEEEEE-HHHHHHHHHH
Confidence 5789999999999995432 233333321 144466554 4555555433
|
|
| >PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function | Back alignment and domain information |
|---|
Probab=89.53 E-value=0.59 Score=45.60 Aligned_cols=52 Identities=21% Similarity=0.276 Sum_probs=36.5
Q ss_pred cEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHh
Q psy9620 152 NMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDF 209 (453)
Q Consensus 152 d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~ 209 (453)
-+||.+..|||||+.++-.+. .+.. ...+..++++++...|...+...+..-
T Consensus 3 v~~I~G~aGTGKTvla~~l~~-~l~~-----~~~~~~~~~l~~n~~l~~~l~~~l~~~ 54 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAK-ELQN-----SEEGKKVLYLCGNHPLRNKLREQLAKK 54 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHH-Hhhc-----cccCCceEEEEecchHHHHHHHHHhhh
Confidence 468899999999977543332 2210 114566999999999999887777654
|
It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation []. |
| >TIGR02767 TraG-Ti Ti-type conjugative transfer system protien TraG | Back alignment and domain information |
|---|
Probab=89.51 E-value=0.44 Score=49.79 Aligned_cols=49 Identities=27% Similarity=0.388 Sum_probs=38.4
Q ss_pred CcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHh
Q psy9620 151 SNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDF 209 (453)
Q Consensus 151 ~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~ 209 (453)
.++++.||||||||..+++|-+... +.-+||+=|--|+.......-++.
T Consensus 212 ~H~lv~ApTgsGKgvg~VIPnLL~~----------~gS~VV~DpKgE~~~~Ta~~R~~~ 260 (623)
T TIGR02767 212 THMIFFAGSGGFKTTSVVVPTALKY----------GGPLVCLDPSTEVAPMVCEHRRQA 260 (623)
T ss_pred ceEEEEeCCCCCccceeehhhhhcC----------CCCEEEEEChHHHHHHHHHHHHHc
Confidence 5899999999999999999986532 113888889999987776655554
|
This protein is found in the Agrobacterium tumefaciens Ti plasmid tra region responsible for conjugative transfer of the entire plasmid among Agrobacterium strains. The protein is distantly related to the F-type conjugation system TraG protein. Both of these systems are examples of type IV secretion systems. |
| >PRK06871 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=89.42 E-value=3.5 Score=39.53 Aligned_cols=89 Identities=16% Similarity=0.187 Sum_probs=50.6
Q ss_pred CCHHHHHHHHHHh----cC---CcEEEEecCCCcchhhhhHHHHHHhhhcCC-------------CCCCCCcEEEEEcCC
Q psy9620 136 PTPIQAQGWPIAM----SG---SNMVGVAQTGSGKTLAYMLPAIVHINHQSQ-------------LKPGDGPIVLVLAPT 195 (453)
Q Consensus 136 ~~~~Q~~~i~~i~----~g---~d~li~a~TGsGKT~~~~l~~l~~~~~~~~-------------~~~~~~~~vlil~Pt 195 (453)
.+|+|+..|..+. ++ +-.|+.+|.|.||+..+..-+-..+...+. ...+..|.+.++.|.
T Consensus 3 ~yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~ 82 (325)
T PRK06871 3 LYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPI 82 (325)
T ss_pred CCcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccc
Confidence 4688888887665 33 357899999999997654433222222211 112456778888883
Q ss_pred ---HHHHHHHHHHHHHh---cCCCCceEEEEeCCc
Q psy9620 196 ---RELAQQIQEVARDF---GSSTYLRSTCVYGGA 224 (453)
Q Consensus 196 ---r~La~q~~~~~~~~---~~~~~~~~~~~~gg~ 224 (453)
..-++|+.+....+ ....+.++..+....
T Consensus 83 ~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~ 117 (325)
T PRK06871 83 DNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAE 117 (325)
T ss_pred cCCCCCHHHHHHHHHHHhhccccCCceEEEEechh
Confidence 12355665544433 233345666554443
|
|
| >PRK11192 ATP-dependent RNA helicase SrmB; Provisional | Back alignment and domain information |
|---|
Probab=89.29 E-value=2 Score=43.13 Aligned_cols=70 Identities=17% Similarity=0.217 Sum_probs=52.9
Q ss_pred CcEEEEEcchhHHHHHHHHHHh----cCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecc------CccCCCCCCCc
Q psy9620 301 NKTIIFAETKRKVDKITKSIQN----YGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDV------AARGLDVDDVK 370 (453)
Q Consensus 301 ~~~lVF~~s~~~~~~l~~~L~~----~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~------~~~GiDip~v~ 370 (453)
.++||.++|++-|.++++.+.. .++.+..++|+.+..++..++ .+..+|||+|.- ....+++.++.
T Consensus 74 ~~~lil~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l----~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~ 149 (434)
T PRK11192 74 PRILILTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVF----SENQDIVVATPGRLLQYIKEENFDCRAVE 149 (434)
T ss_pred ceEEEECCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHh----cCCCCEEEEChHHHHHHHHcCCcCcccCC
Confidence 5799999999999888776654 367899999998877765444 356789999961 22456778888
Q ss_pred EEEE
Q psy9620 371 FVIN 374 (453)
Q Consensus 371 ~VI~ 374 (453)
+||.
T Consensus 150 ~lVi 153 (434)
T PRK11192 150 TLIL 153 (434)
T ss_pred EEEE
Confidence 7774
|
|
| >COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.22 E-value=0.57 Score=44.74 Aligned_cols=65 Identities=15% Similarity=0.205 Sum_probs=47.9
Q ss_pred CCCCCCCHHHHHHHHHHhcCC--cEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHH
Q psy9620 131 QGFDRPTPIQAQGWPIAMSGS--NMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQ 200 (453)
Q Consensus 131 ~g~~~~~~~Q~~~i~~i~~g~--d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~ 200 (453)
+|+..-+..|.-|+..++... =+.+.++.|||||+.++.+.+......+. -.++||.=|+..+-+
T Consensus 224 wGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~-----y~KiiVtRp~vpvG~ 290 (436)
T COG1875 224 WGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKR-----YRKIIVTRPTVPVGE 290 (436)
T ss_pred hccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhh-----hceEEEecCCcCccc
Confidence 477667778888998888543 35578999999999988888887766543 234777778876543
|
|
| >PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=89.17 E-value=3.3 Score=36.56 Aligned_cols=16 Identities=38% Similarity=0.422 Sum_probs=13.7
Q ss_pred EEEEecCCCcchhhhh
Q psy9620 153 MVGVAQTGSGKTLAYM 168 (453)
Q Consensus 153 ~li~a~TGsGKT~~~~ 168 (453)
+++++|||+|||.+..
T Consensus 4 i~lvGptGvGKTTt~a 19 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIA 19 (196)
T ss_dssp EEEEESTTSSHHHHHH
T ss_pred EEEECCCCCchHhHHH
Confidence 6789999999997754
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A .... |
| >PF13872 AAA_34: P-loop containing NTP hydrolase pore-1 | Back alignment and domain information |
|---|
Probab=89.14 E-value=4.5 Score=37.98 Aligned_cols=84 Identities=14% Similarity=0.106 Sum_probs=59.4
Q ss_pred cccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhc----------CCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCC
Q psy9620 116 AEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMS----------GSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGD 185 (453)
Q Consensus 116 ~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~----------g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~ 185 (453)
-.+.||+.+.. -..++..|.+++-.+.+ ..-.++--.||.||--...--|++.+.+.
T Consensus 24 y~~~lp~~~~~------~g~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~G------- 90 (303)
T PF13872_consen 24 YRLHLPEEVID------SGLLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRG------- 90 (303)
T ss_pred cccCCCHHHHh------cccccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcC-------
Confidence 34477776544 23578899998876542 33467777999999866555555555542
Q ss_pred CcEEEEEcCCHHHHHHHHHHHHHhcCC
Q psy9620 186 GPIVLVLAPTRELAQQIQEVARDFGSS 212 (453)
Q Consensus 186 ~~~vlil~Ptr~La~q~~~~~~~~~~~ 212 (453)
..++|+++.+-.|-.+..+.++.++..
T Consensus 91 r~r~vwvS~s~dL~~Da~RDl~DIG~~ 117 (303)
T PF13872_consen 91 RKRAVWVSVSNDLKYDAERDLRDIGAD 117 (303)
T ss_pred CCceEEEECChhhhhHHHHHHHHhCCC
Confidence 235999999999999999999988643
|
|
| >PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=89.08 E-value=20 Score=35.92 Aligned_cols=20 Identities=35% Similarity=0.380 Sum_probs=16.1
Q ss_pred CCcEEEEecCCCcchhhhhH
Q psy9620 150 GSNMVGVAQTGSGKTLAYML 169 (453)
Q Consensus 150 g~d~li~a~TGsGKT~~~~l 169 (453)
++.+++++|||+|||.+...
T Consensus 221 ~~~i~~vGptGvGKTTt~~k 240 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAK 240 (424)
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 45688999999999976543
|
|
| >PRK08116 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=88.91 E-value=8.9 Score=35.73 Aligned_cols=44 Identities=18% Similarity=0.209 Sum_probs=26.9
Q ss_pred cEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHH
Q psy9620 152 NMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQE 204 (453)
Q Consensus 152 d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~ 204 (453)
.+++.+++|+|||..+. ++...+... +..+++ .+..+|..++..
T Consensus 116 gl~l~G~~GtGKThLa~-aia~~l~~~-------~~~v~~-~~~~~ll~~i~~ 159 (268)
T PRK08116 116 GLLLWGSVGTGKTYLAA-CIANELIEK-------GVPVIF-VNFPQLLNRIKS 159 (268)
T ss_pred eEEEECCCCCCHHHHHH-HHHHHHHHc-------CCeEEE-EEHHHHHHHHHH
Confidence 49999999999996543 344444432 223444 455666666543
|
|
| >PRK12726 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=88.89 E-value=10 Score=37.15 Aligned_cols=22 Identities=27% Similarity=0.250 Sum_probs=16.8
Q ss_pred CCcEEEEecCCCcchhhhhHHH
Q psy9620 150 GSNMVGVAQTGSGKTLAYMLPA 171 (453)
Q Consensus 150 g~d~li~a~TGsGKT~~~~l~~ 171 (453)
++.+++++|||+|||....-.+
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA 227 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLG 227 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4567899999999997654433
|
|
| >PRK08699 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=88.80 E-value=4 Score=39.20 Aligned_cols=60 Identities=17% Similarity=0.206 Sum_probs=38.5
Q ss_pred CCHHHHHHHHHHhc--C---CcEEEEecCCCcchhhhhHHHHHHhhhcCCC--------------CCCCCcEEEEEcCC
Q psy9620 136 PTPIQAQGWPIAMS--G---SNMVGVAQTGSGKTLAYMLPAIVHINHQSQL--------------KPGDGPIVLVLAPT 195 (453)
Q Consensus 136 ~~~~Q~~~i~~i~~--g---~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~--------------~~~~~~~vlil~Pt 195 (453)
.+|+|+..|..+.. + +.+|+.+|.|+|||..+..-+-..+...+.. ..+..|...++.|+
T Consensus 2 ~yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~ 80 (325)
T PRK08699 2 IYPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPL 80 (325)
T ss_pred CCCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecc
Confidence 36888888888763 2 3589999999999976544332222212110 12345788899885
|
|
| >PRK01297 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=88.72 E-value=3 Score=42.46 Aligned_cols=72 Identities=25% Similarity=0.323 Sum_probs=53.4
Q ss_pred CCcEEEEEcchhHHHHHHHHHHhc----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecc------CccCCCCCCC
Q psy9620 300 ENKTIIFAETKRKVDKITKSIQNY----GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDV------AARGLDVDDV 369 (453)
Q Consensus 300 ~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~------~~~GiDip~v 369 (453)
..++||.++|++-|.++++.+... ++.+..++++.+.... .+.+..+..+|||+|.- ..+.+.+.++
T Consensus 162 ~~~aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~---~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l 238 (475)
T PRK01297 162 EPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQ---LKQLEARFCDILVATPGRLLDFNQRGEVHLDMV 238 (475)
T ss_pred CceEEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHH---HHHHhCCCCCEEEECHHHHHHHHHcCCcccccC
Confidence 357999999999999988887654 6788889998765543 34556678899999962 1234667777
Q ss_pred cEEEE
Q psy9620 370 KFVIN 374 (453)
Q Consensus 370 ~~VI~ 374 (453)
++||.
T Consensus 239 ~~lVi 243 (475)
T PRK01297 239 EVMVL 243 (475)
T ss_pred ceEEe
Confidence 77664
|
|
| >TIGR01389 recQ ATP-dependent DNA helicase RecQ | Back alignment and domain information |
|---|
Probab=88.72 E-value=1.6 Score=45.89 Aligned_cols=59 Identities=17% Similarity=0.222 Sum_probs=54.8
Q ss_pred CCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEec
Q psy9620 300 ENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATD 358 (453)
Q Consensus 300 ~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~ 358 (453)
.+.+||.+|++.-+.+..+.|...++.+..+|++++..++..+++.+..+..+||++|.
T Consensus 53 ~g~~lVisPl~sL~~dq~~~l~~~gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tp 111 (591)
T TIGR01389 53 KGLTVVISPLISLMKDQVDQLRAAGVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAP 111 (591)
T ss_pred CCcEEEEcCCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECh
Confidence 45789999999999999999999999999999999999999999999999999999885
|
The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ. |
| >KOG1513|consensus | Back alignment and domain information |
|---|
Probab=88.72 E-value=0.77 Score=48.00 Aligned_cols=79 Identities=22% Similarity=0.402 Sum_probs=58.3
Q ss_pred HHHHhcCCCcEEEEeccCccCCCCCCCcEEE--------EcCCCCChhHHHHhhhcccCCCCc-ceEEEEEcC---CChH
Q psy9620 343 LKEFRNGRAGILVATDVAARGLDVDDVKFVI--------NFDYPNNSEDYIHRIGRTGRSDNT-GTSYTFFTQ---QNSR 410 (453)
Q Consensus 343 ~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI--------~~d~p~s~~~y~qr~GRagR~g~~-g~~~~~~~~---~~~~ 410 (453)
-++|.+|+..|-|-..+++-||-+..-+.|+ -..+|+|.+.-+|.+||+-|.++- +--|+|+-. .+.+
T Consensus 850 KqrFM~GeK~vAIISEAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQVsaPEYvFlIseLAGErR 929 (1300)
T KOG1513|consen 850 KQRFMDGEKLVAIISEAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQVSAPEYVFLISELAGERR 929 (1300)
T ss_pred HhhhccccceeeeeehhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccccCCCeEEEEehhhccchH
Confidence 4679999999999999999999987655554 477999999999999999998643 334554443 3455
Q ss_pred HHHHHHHHHHh
Q psy9620 411 QAKDLIDVLTE 421 (453)
Q Consensus 411 ~~~~l~~~l~~ 421 (453)
++.-+.+.|+.
T Consensus 930 FAS~VAKRLES 940 (1300)
T KOG1513|consen 930 FASIVAKRLES 940 (1300)
T ss_pred HHHHHHHHHHh
Confidence 55544445544
|
|
| >KOG1001|consensus | Back alignment and domain information |
|---|
Probab=88.35 E-value=0.14 Score=53.78 Aligned_cols=102 Identities=17% Similarity=0.178 Sum_probs=88.2
Q ss_pred CcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCC-Cc-EEEEeccCccCCCCCCCcEEEEcCCC
Q psy9620 301 NKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGR-AG-ILVATDVAARGLDVDDVKFVINFDYP 378 (453)
Q Consensus 301 ~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~-~~-vLvaT~~~~~GiDip~v~~VI~~d~p 378 (453)
.++|||++-...++.+...|...++....+.|.|+...|..++..|..+. .+ .+++..+...|+++-...+|+..|+-
T Consensus 540 ~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~~glnlt~a~~v~~~d~~ 619 (674)
T KOG1001|consen 540 PKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNLTAASHVLLMDPW 619 (674)
T ss_pred CceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHhhhhhchhhhhHHHhhchh
Confidence 49999999999999999999888888889999999999999999999654 23 45777888899999999999999999
Q ss_pred CChhHHHHhhhcccCCCCcceEEE
Q psy9620 379 NNSEDYIHRIGRTGRSDNTGTSYT 402 (453)
Q Consensus 379 ~s~~~y~qr~GRagR~g~~g~~~~ 402 (453)
+++..--|-+-|+-|-|+.-.+.+
T Consensus 620 wnp~~eeQaidR~hrigq~k~v~v 643 (674)
T KOG1001|consen 620 WNPAVEEQAIDRAHRIGQTKPVKV 643 (674)
T ss_pred cChHHHHHHHHHHHHhcccceeee
Confidence 999999999999888876644433
|
|
| >TIGR02533 type_II_gspE general secretory pathway protein E | Back alignment and domain information |
|---|
Probab=88.12 E-value=0.79 Score=46.62 Aligned_cols=39 Identities=21% Similarity=0.261 Sum_probs=25.8
Q ss_pred CCHHHHHHHHHHhcC-C-cEEEEecCCCcchhhhhHHHHHHh
Q psy9620 136 PTPIQAQGWPIAMSG-S-NMVGVAQTGSGKTLAYMLPAIVHI 175 (453)
Q Consensus 136 ~~~~Q~~~i~~i~~g-~-d~li~a~TGsGKT~~~~l~~l~~~ 175 (453)
+.+-|.+.+..+... + -+++++|||||||.+. ..++..+
T Consensus 226 ~~~~~~~~l~~~~~~~~GlilitGptGSGKTTtL-~a~L~~l 266 (486)
T TIGR02533 226 MSPELLSRFERLIRRPHGIILVTGPTGSGKTTTL-YAALSRL 266 (486)
T ss_pred CCHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHH-HHHHhcc
Confidence 356677777666543 3 3679999999999653 3344443
|
This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis. |
| >PRK04328 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=88.05 E-value=0.8 Score=42.21 Aligned_cols=53 Identities=19% Similarity=0.199 Sum_probs=35.4
Q ss_pred cCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhc
Q psy9620 149 SGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFG 210 (453)
Q Consensus 149 ~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~ 210 (453)
.|..+++.+++|+|||...+--+...+.. +-.+++++ +.+-..++.+.+..++
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~--------ge~~lyis-~ee~~~~i~~~~~~~g 74 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM--------GEPGVYVA-LEEHPVQVRRNMRQFG 74 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhc--------CCcEEEEE-eeCCHHHHHHHHHHcC
Confidence 46788999999999996544333333322 33467766 5566777777777775
|
|
| >cd01131 PilT Pilus retraction ATPase PilT | Back alignment and domain information |
|---|
Probab=87.94 E-value=0.67 Score=41.05 Aligned_cols=22 Identities=32% Similarity=0.359 Sum_probs=15.6
Q ss_pred EEEEecCCCcchhhhhHHHHHHh
Q psy9620 153 MVGVAQTGSGKTLAYMLPAIVHI 175 (453)
Q Consensus 153 ~li~a~TGsGKT~~~~l~~l~~~ 175 (453)
+++++|||||||... ..++..+
T Consensus 4 ilI~GptGSGKTTll-~~ll~~~ 25 (198)
T cd01131 4 VLVTGPTGSGKSTTL-AAMIDYI 25 (198)
T ss_pred EEEECCCCCCHHHHH-HHHHHHh
Confidence 688999999999763 3344443
|
PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility. |
| >PRK14712 conjugal transfer nickase/helicase TraI; Provisional | Back alignment and domain information |
|---|
Probab=87.92 E-value=1.5 Score=50.61 Aligned_cols=65 Identities=20% Similarity=0.246 Sum_probs=45.2
Q ss_pred CCCHHHHHHHHHHhcC--CcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHH
Q psy9620 135 RPTPIQAQGWPIAMSG--SNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQ 203 (453)
Q Consensus 135 ~~~~~Q~~~i~~i~~g--~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~ 203 (453)
.+++-|.+|+..++.. +-++|++..|+|||.+.- .++..+.... ...+..++.++||-.-+..+.
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~-~i~~~~~~l~---e~~g~~V~glAPTgkAa~~L~ 901 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFR-AVMSAVNMLP---ESERPRVVGLGPTHRAVGEMR 901 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHH-HHHHHHHHHh---hccCceEEEEechHHHHHHHH
Confidence 6899999999999854 678899999999996531 1222221110 113567889999988776653
|
|
| >PF12846 AAA_10: AAA-like domain | Back alignment and domain information |
|---|
Probab=87.75 E-value=0.72 Score=43.50 Aligned_cols=43 Identities=23% Similarity=0.424 Sum_probs=29.2
Q ss_pred CCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHH
Q psy9620 150 GSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQ 200 (453)
Q Consensus 150 g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~ 200 (453)
+.+++++|+||+|||.+.. .++..+.. .+..++|+=|..+...
T Consensus 1 n~h~~i~G~tGsGKT~~~~-~l~~~~~~-------~g~~~~i~D~~g~~~~ 43 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLK-NLLEQLIR-------RGPRVVIFDPKGDYSP 43 (304)
T ss_pred CCeEEEECCCCCcHHHHHH-HHHHHHHH-------cCCCEEEEcCCchHHH
Confidence 3578999999999997765 34433333 3556788867655544
|
|
| >PRK08727 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=87.65 E-value=4.3 Score=36.94 Aligned_cols=50 Identities=16% Similarity=0.201 Sum_probs=29.7
Q ss_pred CcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHh
Q psy9620 151 SNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDF 209 (453)
Q Consensus 151 ~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~ 209 (453)
..+++++++|+|||...... ...+.. .+.+++++ |..++...+.+.+..+
T Consensus 42 ~~l~l~G~~G~GKThL~~a~-~~~~~~-------~~~~~~y~-~~~~~~~~~~~~~~~l 91 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALAL-CAAAEQ-------AGRSSAYL-PLQAAAGRLRDALEAL 91 (233)
T ss_pred CeEEEECCCCCCHHHHHHHH-HHHHHH-------cCCcEEEE-eHHHhhhhHHHHHHHH
Confidence 34899999999999543322 222222 24456665 4556665555555555
|
|
| >TIGR02788 VirB11 P-type DNA transfer ATPase VirB11 | Back alignment and domain information |
|---|
Probab=87.63 E-value=0.74 Score=43.95 Aligned_cols=20 Identities=40% Similarity=0.388 Sum_probs=17.1
Q ss_pred HhcCCcEEEEecCCCcchhh
Q psy9620 147 AMSGSNMVGVAQTGSGKTLA 166 (453)
Q Consensus 147 i~~g~d~li~a~TGsGKT~~ 166 (453)
+..+.+++++++||||||..
T Consensus 141 v~~~~~ili~G~tGsGKTTl 160 (308)
T TIGR02788 141 IASRKNIIISGGTGSGKTTF 160 (308)
T ss_pred hhCCCEEEEECCCCCCHHHH
Confidence 44688999999999999964
|
The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA. |
| >PRK12678 transcription termination factor Rho; Provisional | Back alignment and domain information |
|---|
Probab=87.16 E-value=3.9 Score=42.03 Aligned_cols=87 Identities=11% Similarity=0.183 Sum_probs=46.7
Q ss_pred HHHHHHh-cCCCcEEEEeccCccCCCCCCCcEEEEcC----CCCChhHHHHhhhcccCCCCcceEEEEEcCCChHHHHHH
Q psy9620 341 YVLKEFR-NGRAGILVATDVAARGLDVDDVKFVINFD----YPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDL 415 (453)
Q Consensus 341 ~~~~~f~-~g~~~vLvaT~~~~~GiDip~v~~VI~~d----~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l 415 (453)
.|++.|+ .+.-.|++...++.+|+ +|.|++..-.. .-.+.+. ++.+.+.=|. +. .-+....+..|
T Consensus 575 ~Ifeefkgtgn~elvLsR~LAerri-fPAIDv~~S~SR~ee~l~~~~e-~~~~~~lRr~------l~--~~~~~~a~e~l 644 (672)
T PRK12678 575 VIFEEFKGTGNMELKLDRKLADKRI-FPAVDVNASGTRKEELLLSPDE-LAIVHKLRRV------LS--GLDSQQAIDLL 644 (672)
T ss_pred chHHHHhhccCceeeECHHHHhCCC-CCccCCCcCccccchhhCCHHH-HHHHHHHHHH------HH--cCCHHHHHHHH
Confidence 3777787 46677888888999886 67776433211 1111222 2222221111 11 12334566777
Q ss_pred HHHHHhcCCCCChHHHHHHhhcC
Q psy9620 416 IDVLTESNHPVDPKLSALASRSG 438 (453)
Q Consensus 416 ~~~l~~~~~~v~~~l~~~~~~~~ 438 (453)
++.|++.... .++|..|.....
T Consensus 645 ~~~l~~t~~N-~efl~~~~~~~~ 666 (672)
T PRK12678 645 ISRLKKTKSN-YEFLMQVSKTTP 666 (672)
T ss_pred HHHHhcCCCH-HHHHHHHHhhCC
Confidence 7777765543 566777765544
|
|
| >PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases | Back alignment and domain information |
|---|
Probab=87.14 E-value=4.8 Score=34.05 Aligned_cols=81 Identities=19% Similarity=0.354 Sum_probs=56.2
Q ss_pred HHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhc----CCeEEEEcCCCCHH-HHHHHHHHHhcCCCcEEEEecc-----
Q psy9620 290 GLLNDISSKDENKTIIFAETKRKVDKITKSIQNY----GWAAVGIHGDKSQQ-ERDYVLKEFRNGRAGILVATDV----- 359 (453)
Q Consensus 290 ~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~~h~~~~~~-~r~~~~~~f~~g~~~vLvaT~~----- 359 (453)
.++..+...+..++||.++++..++.+.+.+... +..+..+|++.+.. +....+ .+..+|+|+|..
T Consensus 34 ~~l~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ilv~T~~~l~~~ 109 (169)
T PF00270_consen 34 PALNRLQEGKDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLHGGQSISEDQREVL----SNQADILVTTPEQLLDL 109 (169)
T ss_dssp HHHHHHHTTSSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEESTTSCHHHHHHHHH----HTTSSEEEEEHHHHHHH
T ss_pred HHHhhhccCCCceEEEEeecccccccccccccccccccccccccccccccccccccccc----cccccccccCcchhhcc
Confidence 4454454444459999999999999999888765 35788889988744 322333 678999999963
Q ss_pred C-ccCCCCCCCcEEEE
Q psy9620 360 A-ARGLDVDDVKFVIN 374 (453)
Q Consensus 360 ~-~~GiDip~v~~VI~ 374 (453)
+ ...+++..+.+||.
T Consensus 110 ~~~~~~~~~~~~~iVi 125 (169)
T PF00270_consen 110 ISNGKINISRLSLIVI 125 (169)
T ss_dssp HHTTSSTGTTESEEEE
T ss_pred ccccccccccceeecc
Confidence 1 12346777777664
|
Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A .... |
| >PRK09183 transposase/IS protein; Provisional | Back alignment and domain information |
|---|
Probab=87.08 E-value=1.2 Score=41.31 Aligned_cols=47 Identities=21% Similarity=0.215 Sum_probs=28.9
Q ss_pred HhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHH
Q psy9620 147 AMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQI 202 (453)
Q Consensus 147 i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~ 202 (453)
+..+.++++.+|+|+|||........... . .+..++++ +..+|..++
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~-~-------~G~~v~~~-~~~~l~~~l 145 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEAV-R-------AGIKVRFT-TAADLLLQL 145 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHHH-H-------cCCeEEEE-eHHHHHHHH
Confidence 44688999999999999965443322222 1 24456655 444555544
|
|
| >PRK04837 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=86.99 E-value=3.5 Score=41.27 Aligned_cols=70 Identities=19% Similarity=0.232 Sum_probs=51.0
Q ss_pred CcEEEEEcchhHHHHHHHHHHh----cCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecc-----C-ccCCCCCCCc
Q psy9620 301 NKTIIFAETKRKVDKITKSIQN----YGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDV-----A-ARGLDVDDVK 370 (453)
Q Consensus 301 ~~~lVF~~s~~~~~~l~~~L~~----~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~-----~-~~GiDip~v~ 370 (453)
.++||.+++++-|.++++.+.. .++.+..++|+.+.......+ ....+|||+|.- + ...+++.++.
T Consensus 84 ~~~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~l~~~l~~~~~~l~~v~ 159 (423)
T PRK04837 84 PRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVL----ESGVDILIGTTGRLIDYAKQNHINLGAIQ 159 (423)
T ss_pred ceEEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh----cCCCCEEEECHHHHHHHHHcCCccccccc
Confidence 5799999999999998776654 367888899987765543333 245789999972 2 2347788888
Q ss_pred EEEE
Q psy9620 371 FVIN 374 (453)
Q Consensus 371 ~VI~ 374 (453)
+||.
T Consensus 160 ~lVi 163 (423)
T PRK04837 160 VVVL 163 (423)
T ss_pred EEEE
Confidence 8774
|
|
| >PRK12377 putative replication protein; Provisional | Back alignment and domain information |
|---|
Probab=86.90 E-value=1.7 Score=39.89 Aligned_cols=47 Identities=17% Similarity=0.224 Sum_probs=28.0
Q ss_pred CCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHH
Q psy9620 150 GSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEV 205 (453)
Q Consensus 150 g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~ 205 (453)
..++++.+++|+|||..... +...+.. .+..|+ .++..+|..++...
T Consensus 101 ~~~l~l~G~~GtGKThLa~A-Ia~~l~~-------~g~~v~-~i~~~~l~~~l~~~ 147 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAA-IGNRLLA-------KGRSVI-VVTVPDVMSRLHES 147 (248)
T ss_pred CCeEEEECCCCCCHHHHHHH-HHHHHHH-------cCCCeE-EEEHHHHHHHHHHH
Confidence 35799999999999955332 2333332 233344 44556776665543
|
|
| >TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN | Back alignment and domain information |
|---|
Probab=86.35 E-value=0.7 Score=42.96 Aligned_cols=27 Identities=26% Similarity=0.214 Sum_probs=21.1
Q ss_pred HHHHHHhcCCcEEEEecCCCcchhhhh
Q psy9620 142 QGWPIAMSGSNMVGVAQTGSGKTLAYM 168 (453)
Q Consensus 142 ~~i~~i~~g~d~li~a~TGsGKT~~~~ 168 (453)
.++..+..++++++.+|+|+|||..+.
T Consensus 13 ~~l~~l~~g~~vLL~G~~GtGKT~lA~ 39 (262)
T TIGR02640 13 RALRYLKSGYPVHLRGPAGTGKTTLAM 39 (262)
T ss_pred HHHHHHhcCCeEEEEcCCCCCHHHHHH
Confidence 334455578999999999999997653
|
Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728). |
| >TIGR03754 conj_TOL_TraD conjugative coupling factor TraD, TOL family | Back alignment and domain information |
|---|
Probab=86.19 E-value=1.8 Score=45.23 Aligned_cols=56 Identities=23% Similarity=0.293 Sum_probs=40.7
Q ss_pred CCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCH--HHHHHHHHHHHHhcCCC
Q psy9620 150 GSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTR--ELAQQIQEVARDFGSST 213 (453)
Q Consensus 150 g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr--~La~q~~~~~~~~~~~~ 213 (453)
..+++|.++||+|||....+.+.+.+.. +..++++=|-. +|...+...++..+...
T Consensus 180 ~gHtlV~GtTGsGKT~l~~~li~q~i~~--------g~~vi~fDpkgD~el~~~~~~~~~~~GR~~ 237 (643)
T TIGR03754 180 VGHTLVLGTTRVGKTRLAELLITQDIRR--------GDVVIVFDPKGDADLLKRMYAEAKRAGRLD 237 (643)
T ss_pred cCceEEECCCCCCHHHHHHHHHHHHHHc--------CCeEEEEeCCCCHHHHHHHHHHHHHhCCCC
Confidence 4678999999999998877665555532 44577777765 56777777888776543
|
Members of this protein are assigned by homology to the TraD family of conjugative coupling factor. This particular clade serves as a marker for an extended gene region that occurs occasionally on plasmids, including the toluene catabolism TOL plasmid. More commonly, the gene region is chromosomal, flanked by various markers of conjugative transfer and insertion. |
| >TIGR03743 SXT_TraD conjugative coupling factor TraD, SXT/TOL subfamily | Back alignment and domain information |
|---|
Probab=86.16 E-value=1.9 Score=45.43 Aligned_cols=55 Identities=25% Similarity=0.389 Sum_probs=38.1
Q ss_pred CCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHH--HHHHHHHHHHHhcCC
Q psy9620 150 GSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRE--LAQQIQEVARDFGSS 212 (453)
Q Consensus 150 g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~--La~q~~~~~~~~~~~ 212 (453)
..++++.|+||+|||..+.+.+.+.+.. +..++|+=|--. |...+...++..+..
T Consensus 176 ~~H~lv~G~TGsGKT~l~~~l~~q~i~~--------g~~viv~DpKgD~~l~~~~~~~~~~~G~~ 232 (634)
T TIGR03743 176 VGHTLVLGTTGVGKTRLAELLITQDIRR--------GDVVIVIDPKGDADLKRRMRAEAKRAGRP 232 (634)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHc--------CCeEEEEeCCCchHHHHHHHHHHHHhCCC
Confidence 4689999999999998765544444432 344666667644 777777777777644
|
Members of this protein family are the putative conjugative coupling factor, TraD (or TraG), rather distantly related to the well-characterized TraD of the F plasmid. Members are associated with conjugative-transposon-like mobile genetic elements of the class that includes SXT, an antibiotic resistance transfer element in some Vibrio cholerae strains. |
| >PRK08533 flagellar accessory protein FlaH; Reviewed | Back alignment and domain information |
|---|
Probab=86.05 E-value=1.3 Score=40.19 Aligned_cols=54 Identities=17% Similarity=0.146 Sum_probs=34.1
Q ss_pred hcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhc
Q psy9620 148 MSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFG 210 (453)
Q Consensus 148 ~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~ 210 (453)
..+.-+++.+++|+|||...+-.+.. +.. .+.++++++ +.+-..+..+.+..++
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~-~~~-------~g~~~~yi~-~e~~~~~~~~~~~~~g 75 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYG-FLQ-------NGYSVSYVS-TQLTTTEFIKQMMSLG 75 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH-HHh-------CCCcEEEEe-CCCCHHHHHHHHHHhC
Confidence 45778899999999999664332322 221 234578877 4444566666666654
|
|
| >PRK07952 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
Probab=85.92 E-value=2.4 Score=38.85 Aligned_cols=43 Identities=14% Similarity=0.261 Sum_probs=25.4
Q ss_pred CcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHH
Q psy9620 151 SNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQI 202 (453)
Q Consensus 151 ~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~ 202 (453)
..+++.+++|+|||.... .+...+.. .+..++++ +..+|...+
T Consensus 100 ~~~~l~G~~GtGKThLa~-aia~~l~~-------~g~~v~~i-t~~~l~~~l 142 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAA-AICNELLL-------RGKSVLII-TVADIMSAM 142 (244)
T ss_pred ceEEEECCCCCCHHHHHH-HHHHHHHh-------cCCeEEEE-EHHHHHHHH
Confidence 478999999999996543 23333332 23446555 444444443
|
|
| >TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family | Back alignment and domain information |
|---|
Probab=85.89 E-value=1.2 Score=40.25 Aligned_cols=53 Identities=26% Similarity=0.357 Sum_probs=32.6
Q ss_pred cCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhc
Q psy9620 149 SGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFG 210 (453)
Q Consensus 149 ~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~ 210 (453)
.|..+++.+++|+|||...+..+...+. .+..+++++- .+...++.+.+..++
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~--------~g~~~~~is~-e~~~~~i~~~~~~~g 71 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLR--------DGDPVIYVTT-EESRESIIRQAAQFG 71 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHh--------cCCeEEEEEc-cCCHHHHHHHHHHhC
Confidence 4678899999999999654433333332 1334666653 445566666666553
|
Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain. |
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=85.80 E-value=0.53 Score=38.23 Aligned_cols=18 Identities=39% Similarity=0.457 Sum_probs=15.2
Q ss_pred CCcEEEEecCCCcchhhh
Q psy9620 150 GSNMVGVAQTGSGKTLAY 167 (453)
Q Consensus 150 g~d~li~a~TGsGKT~~~ 167 (453)
+..+++.+|+|+|||...
T Consensus 2 ~~~~~l~G~~G~GKTtl~ 19 (148)
T smart00382 2 GEVILIVGPPGSGKTTLA 19 (148)
T ss_pred CCEEEEECCCCCcHHHHH
Confidence 467899999999999654
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family | Back alignment and domain information |
|---|
Probab=85.72 E-value=1.7 Score=40.30 Aligned_cols=37 Identities=22% Similarity=0.187 Sum_probs=24.3
Q ss_pred cCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEc
Q psy9620 149 SGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLA 193 (453)
Q Consensus 149 ~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~ 193 (453)
.|.-+++.+++|+|||...+--+...+. .+-++++++
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~--------~Ge~vlyis 71 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQAS--------RGNPVLFVT 71 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh--------CCCcEEEEE
Confidence 4677899999999999654433333222 234577776
|
This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles. |
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Probab=85.68 E-value=2.8 Score=34.15 Aligned_cols=17 Identities=29% Similarity=0.388 Sum_probs=15.1
Q ss_pred CCcEEEEecCCCcchhh
Q psy9620 150 GSNMVGVAQTGSGKTLA 166 (453)
Q Consensus 150 g~d~li~a~TGsGKT~~ 166 (453)
++.+++.+|+|+|||..
T Consensus 19 ~~~v~i~G~~G~GKT~l 35 (151)
T cd00009 19 PKNLLLYGPPGTGKTTL 35 (151)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 67899999999999954
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. |
| >PHA02244 ATPase-like protein | Back alignment and domain information |
|---|
Probab=85.46 E-value=0.8 Score=44.36 Aligned_cols=22 Identities=23% Similarity=0.163 Sum_probs=18.2
Q ss_pred HHhcCCcEEEEecCCCcchhhh
Q psy9620 146 IAMSGSNMVGVAQTGSGKTLAY 167 (453)
Q Consensus 146 ~i~~g~d~li~a~TGsGKT~~~ 167 (453)
.+..+.++++.+|||+|||...
T Consensus 115 ~l~~~~PVLL~GppGtGKTtLA 136 (383)
T PHA02244 115 IVNANIPVFLKGGAGSGKNHIA 136 (383)
T ss_pred HHhcCCCEEEECCCCCCHHHHH
Confidence 3446889999999999999654
|
|
| >PRK09401 reverse gyrase; Reviewed | Back alignment and domain information |
|---|
Probab=85.43 E-value=3.4 Score=46.86 Aligned_cols=75 Identities=21% Similarity=0.385 Sum_probs=55.4
Q ss_pred CCCcEEEEEcchhHHHHHHHHHHhc----CCeEE--EEcCCCCHHHHHHHHHHHhcCCCcEEEEecc-Cc---cCCCCCC
Q psy9620 299 DENKTIIFAETKRKVDKITKSIQNY----GWAAV--GIHGDKSQQERDYVLKEFRNGRAGILVATDV-AA---RGLDVDD 368 (453)
Q Consensus 299 ~~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~--~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~-~~---~GiDip~ 368 (453)
...++||.+||+.-+.++++.|... +..+. ..|+.++..++....+.+..+..+|+|+|.- +. ..+....
T Consensus 122 ~g~~alIL~PTreLa~Qi~~~l~~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~~l~~~~ 201 (1176)
T PRK09401 122 KGKKSYIIFPTRLLVEQVVEKLEKFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFDELPKKK 201 (1176)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHhhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccc
Confidence 3578999999999999999998865 33333 3466677788888899999999999999952 11 1344444
Q ss_pred CcEEE
Q psy9620 369 VKFVI 373 (453)
Q Consensus 369 v~~VI 373 (453)
+++||
T Consensus 202 ~~~lV 206 (1176)
T PRK09401 202 FDFVF 206 (1176)
T ss_pred cCEEE
Confidence 66665
|
|
| >COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=85.39 E-value=0.89 Score=50.09 Aligned_cols=74 Identities=15% Similarity=0.112 Sum_probs=49.5
Q ss_pred CCCCHHHHHHHHHHh-----cCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHH
Q psy9620 134 DRPTPIQAQGWPIAM-----SGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARD 208 (453)
Q Consensus 134 ~~~~~~Q~~~i~~i~-----~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~ 208 (453)
..+.++|.+.+..+. .+.+.++....|.|||+..+..+.. +..... ...+.+||+||+ +++.++.+++.+
T Consensus 337 ~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~-~~~~~~---~~~~~~liv~p~-s~~~nw~~e~~k 411 (866)
T COG0553 337 AELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLS-LLESIK---VYLGPALIVVPA-SLLSNWKREFEK 411 (866)
T ss_pred hhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHh-hhhccc---CCCCCeEEEecH-HHHHHHHHHHhh
Confidence 467888999887644 2667788899999999775444433 222211 114569999998 556777777777
Q ss_pred hcCC
Q psy9620 209 FGSS 212 (453)
Q Consensus 209 ~~~~ 212 (453)
+...
T Consensus 412 ~~~~ 415 (866)
T COG0553 412 FAPD 415 (866)
T ss_pred hCcc
Confidence 7543
|
|
| >PHA02533 17 large terminase protein; Provisional | Back alignment and domain information |
|---|
Probab=85.34 E-value=4.1 Score=41.99 Aligned_cols=69 Identities=13% Similarity=0.037 Sum_probs=52.0
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHh
Q psy9620 135 RPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDF 209 (453)
Q Consensus 135 ~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~ 209 (453)
.|.|+|...+..+..++-.++..+=..|||.+....++..+... .+..+++++|++.-|..+.+.++.+
T Consensus 59 ~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~------~~~~v~i~A~~~~QA~~vF~~ik~~ 127 (534)
T PHA02533 59 QMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFN------KDKNVGILAHKASMAAEVLDRTKQA 127 (534)
T ss_pred CCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhC------CCCEEEEEeCCHHHHHHHHHHHHHH
Confidence 68899999998876566667888888999987665444333322 3558999999999999888777654
|
|
| >cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain | Back alignment and domain information |
|---|
Probab=85.25 E-value=0.71 Score=46.01 Aligned_cols=47 Identities=17% Similarity=0.340 Sum_probs=31.0
Q ss_pred HhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHH
Q psy9620 147 AMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQ 201 (453)
Q Consensus 147 i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q 201 (453)
-...+++++.|+||||||.+ +..++..+... +..+||+=|..++...
T Consensus 39 ~~~~~h~~i~g~tGsGKt~~-i~~l~~~~~~~-------~~~~vi~D~kg~~~~~ 85 (410)
T cd01127 39 DAEEAHTMIIGTTGTGKTTQ-IRELLASIRAR-------GDRAIIYDPNGGFVSK 85 (410)
T ss_pred chhhccEEEEcCCCCCHHHH-HHHHHHHHHhc-------CCCEEEEeCCcchhHh
Confidence 34567999999999999975 33344443332 3347777787776543
|
TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria. |
| >PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein | Back alignment and domain information |
|---|
Probab=85.09 E-value=0.98 Score=44.62 Aligned_cols=49 Identities=20% Similarity=0.352 Sum_probs=31.7
Q ss_pred HhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHH
Q psy9620 147 AMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQ 203 (453)
Q Consensus 147 i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~ 203 (453)
-...+++++.+.||||||. ++..++..+... +-++||.=|.-+.....+
T Consensus 12 ~~e~~~~li~G~~GsGKT~-~i~~ll~~~~~~-------g~~~iI~D~kg~~~~~f~ 60 (386)
T PF10412_consen 12 DSENRHILIIGATGSGKTQ-AIRHLLDQIRAR-------GDRAIIYDPKGEFTERFY 60 (386)
T ss_dssp GGGGG-EEEEE-TTSSHHH-HHHHHHHHHHHT-------T-EEEEEEETTHHHHHH-
T ss_pred chhhCcEEEECCCCCCHHH-HHHHHHHHHHHc-------CCEEEEEECCchHHHHhc
Confidence 3457899999999999996 456666666553 445777777766654433
|
It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A. |
| >TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI | Back alignment and domain information |
|---|
Probab=85.05 E-value=2.4 Score=50.58 Aligned_cols=63 Identities=25% Similarity=0.266 Sum_probs=45.3
Q ss_pred CCCCHHHHHHHHHHhcC--CcEEEEecCCCcchhhhh---HHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHH
Q psy9620 134 DRPTPIQAQGWPIAMSG--SNMVGVAQTGSGKTLAYM---LPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQ 203 (453)
Q Consensus 134 ~~~~~~Q~~~i~~i~~g--~d~li~a~TGsGKT~~~~---l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~ 203 (453)
..+++.|.+|+..++.+ +-++|++..|+|||.... -++...+.. .+..++.++||-.-+.++.
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~-------~g~~v~glApT~~Aa~~L~ 1085 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFES-------EQLQVIGLAPTHEAVGELK 1085 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHh-------cCCeEEEEeChHHHHHHHH
Confidence 37899999999998865 456788999999996541 122222221 3567999999988776664
|
This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein. |
| >PRK12723 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=84.70 E-value=2.8 Score=41.25 Aligned_cols=18 Identities=33% Similarity=0.370 Sum_probs=15.2
Q ss_pred CcEEEEecCCCcchhhhh
Q psy9620 151 SNMVGVAQTGSGKTLAYM 168 (453)
Q Consensus 151 ~d~li~a~TGsGKT~~~~ 168 (453)
+.+++++|||+|||.+..
T Consensus 175 ~vi~lvGptGvGKTTT~a 192 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIA 192 (388)
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 468899999999998754
|
|
| >COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=84.10 E-value=3.5 Score=40.58 Aligned_cols=90 Identities=18% Similarity=0.149 Sum_probs=46.6
Q ss_pred CCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCH-------HHHHHHHHHHHHhcCCCCceEEEEe-
Q psy9620 150 GSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTR-------ELAQQIQEVARDFGSSTYLRSTCVY- 221 (453)
Q Consensus 150 g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr-------~La~q~~~~~~~~~~~~~~~~~~~~- 221 (453)
...+++.|++|+|||-......- .+... ...++++++.... ++-..-.+.|++.. .+...++-
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign-~~~~~-----~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y---~~dlllIDD 183 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGN-EALAN-----GPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKY---SLDLLLIDD 183 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHH-HHHhh-----CCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhh---ccCeeeech
Confidence 45689999999999954322222 22221 1344677766544 22222333444442 23333221
Q ss_pred ----CCccCCCC-----------CCceEEEEeccCcHHHHHH
Q psy9620 222 ----GGASKGPQ-----------PDRQVLMWSATWPREVQKL 248 (453)
Q Consensus 222 ----gg~~~~~~-----------~~~q~v~~SAT~~~~~~~~ 248 (453)
.+...... ...|+|+.|..+|.++..+
T Consensus 184 iq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~ 225 (408)
T COG0593 184 IQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGL 225 (408)
T ss_pred HhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccc
Confidence 11111111 4559999998888776543
|
|
| >PRK13709 conjugal transfer nickase/helicase TraI; Provisional | Back alignment and domain information |
|---|
Probab=84.06 E-value=3.1 Score=48.70 Aligned_cols=65 Identities=20% Similarity=0.238 Sum_probs=45.4
Q ss_pred CCCHHHHHHHHHHhcC--CcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHH
Q psy9620 135 RPTPIQAQGWPIAMSG--SNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQ 203 (453)
Q Consensus 135 ~~~~~Q~~~i~~i~~g--~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~ 203 (453)
.+++.|.+|+..++.. +-++|++..|+|||... -.++..+.... ...+..++.++||---+..+.
T Consensus 967 ~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l-~~v~~~~~~l~---~~~~~~V~glAPTgrAAk~L~ 1033 (1747)
T PRK13709 967 GLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQF-RAVMSAVNTLP---ESERPRVVGLGPTHRAVGEMR 1033 (1747)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHH-HHHHHHHHHhh---cccCceEEEECCcHHHHHHHH
Confidence 6899999999999875 56789999999999653 22233222111 113566889999987776654
|
|
| >PRK11057 ATP-dependent DNA helicase RecQ; Provisional | Back alignment and domain information |
|---|
Probab=83.95 E-value=4.1 Score=42.93 Aligned_cols=59 Identities=14% Similarity=0.226 Sum_probs=54.5
Q ss_pred CCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEec
Q psy9620 300 ENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATD 358 (453)
Q Consensus 300 ~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~ 358 (453)
.+.+||.+|++.-+.+..+.|...++.+..+++..+..++..+++....++.++|++|+
T Consensus 65 ~g~tlVisPl~sL~~dqv~~l~~~gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tP 123 (607)
T PRK11057 65 DGLTLVVSPLISLMKDQVDQLLANGVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAP 123 (607)
T ss_pred CCCEEEEecHHHHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEECh
Confidence 45799999999999999999999999999999999999999999999999999999884
|
|
| >PRK06964 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=83.77 E-value=7.7 Score=37.51 Aligned_cols=35 Identities=20% Similarity=0.167 Sum_probs=26.5
Q ss_pred CCHHHHHHHHHHhc--C---CcEEEEecCCCcchhhhhHH
Q psy9620 136 PTPIQAQGWPIAMS--G---SNMVGVAQTGSGKTLAYMLP 170 (453)
Q Consensus 136 ~~~~Q~~~i~~i~~--g---~d~li~a~TGsGKT~~~~l~ 170 (453)
++|+|...|..+.. + +-+|+.+|.|.||+..+...
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~~ 41 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQHL 41 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHHH
Confidence 36888888887664 2 36789999999999765443
|
|
| >cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases | Back alignment and domain information |
|---|
Probab=83.74 E-value=0.56 Score=43.80 Aligned_cols=54 Identities=22% Similarity=0.113 Sum_probs=31.7
Q ss_pred HhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHH
Q psy9620 147 AMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARD 208 (453)
Q Consensus 147 i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~ 208 (453)
+..|.-+++.|++|+|||...+..+...+.. .+..|++++-- +-..++...+..
T Consensus 27 ~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~-------~g~~vl~iS~E-~~~~~~~~r~~~ 80 (271)
T cd01122 27 LRKGELIILTAGTGVGKTTFLREYALDLITQ-------HGVRVGTISLE-EPVVRTARRLLG 80 (271)
T ss_pred EcCCcEEEEEcCCCCCHHHHHHHHHHHHHHh-------cCceEEEEEcc-cCHHHHHHHHHH
Confidence 4567888999999999996544333332222 24457777532 234455544443
|
Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands. |
| >PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein | Back alignment and domain information |
|---|
Probab=83.65 E-value=1.4 Score=40.14 Aligned_cols=36 Identities=25% Similarity=0.457 Sum_probs=22.8
Q ss_pred cEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCC
Q psy9620 152 NMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPT 195 (453)
Q Consensus 152 d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt 195 (453)
.++++|++|||||. +++-++..+.+. -..+++++|.
T Consensus 15 r~viIG~sGSGKT~-li~~lL~~~~~~-------f~~I~l~t~~ 50 (241)
T PF04665_consen 15 RMVIIGKSGSGKTT-LIKSLLYYLRHK-------FDHIFLITPE 50 (241)
T ss_pred eEEEECCCCCCHHH-HHHHHHHhhccc-------CCEEEEEecC
Confidence 78999999999995 444455443331 1335566663
|
This is thought to be an ATPase involved in viral DNA packaging []. |
| >PTZ00110 helicase; Provisional | Back alignment and domain information |
|---|
Probab=83.63 E-value=5 Score=41.66 Aligned_cols=71 Identities=15% Similarity=0.278 Sum_probs=50.7
Q ss_pred CCcEEEEEcchhHHHHHHHHHHhc----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEec-----cCccC-CCCCCC
Q psy9620 300 ENKTIIFAETKRKVDKITKSIQNY----GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATD-----VAARG-LDVDDV 369 (453)
Q Consensus 300 ~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~~G-iDip~v 369 (453)
...+||.++|++-|.++.+.+... ++.+..++++.+.......+ +. ...|||+|+ .+..+ +++..+
T Consensus 203 gp~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l---~~-~~~IlVaTPgrL~d~l~~~~~~l~~v 278 (545)
T PTZ00110 203 GPIVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYAL---RR-GVEILIACPGRLIDFLESNVTNLRRV 278 (545)
T ss_pred CcEEEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHH---Hc-CCCEEEECHHHHHHHHHcCCCChhhC
Confidence 346899999999999988888764 46677788887765544333 33 478999996 34433 567788
Q ss_pred cEEEE
Q psy9620 370 KFVIN 374 (453)
Q Consensus 370 ~~VI~ 374 (453)
++||.
T Consensus 279 ~~lVi 283 (545)
T PTZ00110 279 TYLVL 283 (545)
T ss_pred cEEEe
Confidence 87663
|
|
| >PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=83.62 E-value=22 Score=38.23 Aligned_cols=22 Identities=36% Similarity=0.336 Sum_probs=16.3
Q ss_pred CCcEEEEecCCCcchhhhhHHH
Q psy9620 150 GSNMVGVAQTGSGKTLAYMLPA 171 (453)
Q Consensus 150 g~d~li~a~TGsGKT~~~~l~~ 171 (453)
++-+++++|||+|||.+....+
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA 206 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLA 206 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHH
Confidence 3457799999999997754433
|
|
| >PRK07993 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=83.60 E-value=7.9 Score=37.38 Aligned_cols=90 Identities=16% Similarity=0.155 Sum_probs=53.3
Q ss_pred CCCHHHHHHHHHHh----cC---CcEEEEecCCCcchhhhhHHHHHHhhhcCC-------------CCCCCCcEEEEEcC
Q psy9620 135 RPTPIQAQGWPIAM----SG---SNMVGVAQTGSGKTLAYMLPAIVHINHQSQ-------------LKPGDGPIVLVLAP 194 (453)
Q Consensus 135 ~~~~~Q~~~i~~i~----~g---~d~li~a~TGsGKT~~~~l~~l~~~~~~~~-------------~~~~~~~~vlil~P 194 (453)
..+|+|..+|..+. ++ +-.|+.+|.|.||+..+..-+-..+...+. ...+..|.+.++.|
T Consensus 2 ~~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p 81 (334)
T PRK07993 2 KWYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTP 81 (334)
T ss_pred CCCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEec
Confidence 35788888888765 33 357899999999997654332222221211 11245688888988
Q ss_pred CH----HHHHHHHHHHHHhc---CCCCceEEEEeCCc
Q psy9620 195 TR----ELAQQIQEVARDFG---SSTYLRSTCVYGGA 224 (453)
Q Consensus 195 tr----~La~q~~~~~~~~~---~~~~~~~~~~~gg~ 224 (453)
.. .-++|+.+..+.+. ...+.+++.+....
T Consensus 82 ~~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae 118 (334)
T PRK07993 82 EKGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAA 118 (334)
T ss_pred ccccccCCHHHHHHHHHHHhhccccCCceEEEEcchH
Confidence 64 34667666555543 22345555554433
|
|
| >KOG0745|consensus | Back alignment and domain information |
|---|
Probab=83.59 E-value=1.3 Score=43.40 Aligned_cols=38 Identities=32% Similarity=0.382 Sum_probs=25.1
Q ss_pred cCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCH
Q psy9620 149 SGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTR 196 (453)
Q Consensus 149 ~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr 196 (453)
+..|+|+.+|||||||+.+. -|..+. +-|.+|.=|-|-
T Consensus 225 eKSNvLllGPtGsGKTllaq--TLAr~l--------dVPfaIcDcTtL 262 (564)
T KOG0745|consen 225 EKSNVLLLGPTGSGKTLLAQ--TLARVL--------DVPFAICDCTTL 262 (564)
T ss_pred ecccEEEECCCCCchhHHHH--HHHHHh--------CCCeEEecccch
Confidence 45689999999999997543 344443 345566655553
|
|
| >PF13555 AAA_29: P-loop containing region of AAA domain | Back alignment and domain information |
|---|
Probab=83.59 E-value=0.7 Score=32.22 Aligned_cols=17 Identities=29% Similarity=0.393 Sum_probs=14.6
Q ss_pred CCcEEEEecCCCcchhh
Q psy9620 150 GSNMVGVAQTGSGKTLA 166 (453)
Q Consensus 150 g~d~li~a~TGsGKT~~ 166 (453)
+...++.+++|+|||..
T Consensus 23 g~~tli~G~nGsGKSTl 39 (62)
T PF13555_consen 23 GDVTLITGPNGSGKSTL 39 (62)
T ss_pred CcEEEEECCCCCCHHHH
Confidence 45789999999999965
|
|
| >PRK06090 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=83.33 E-value=11 Score=36.06 Aligned_cols=90 Identities=17% Similarity=0.178 Sum_probs=51.3
Q ss_pred CCCHHHHHHHHHHh----cC---CcEEEEecCCCcchhhhhHHHHHHhhhcCC------------CCCCCCcEEEEEcCC
Q psy9620 135 RPTPIQAQGWPIAM----SG---SNMVGVAQTGSGKTLAYMLPAIVHINHQSQ------------LKPGDGPIVLVLAPT 195 (453)
Q Consensus 135 ~~~~~Q~~~i~~i~----~g---~d~li~a~TGsGKT~~~~l~~l~~~~~~~~------------~~~~~~~~vlil~Pt 195 (453)
.++|+|...|..+. ++ +-+++++|.|.||+..+...+-..+..... ...+..|...++.|.
T Consensus 3 ~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~ 82 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPE 82 (319)
T ss_pred cCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecC
Confidence 46788888887665 33 368999999999996654333222222211 112456888889886
Q ss_pred H----HHHHHHHHHHHHhc---CCCCceEEEEeCCc
Q psy9620 196 R----ELAQQIQEVARDFG---SSTYLRSTCVYGGA 224 (453)
Q Consensus 196 r----~La~q~~~~~~~~~---~~~~~~~~~~~gg~ 224 (453)
. .-++|+.+....+. ...+.++..+....
T Consensus 83 ~~~~~I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae 118 (319)
T PRK06090 83 KEGKSITVEQIRQCNRLAQESSQLNGYRLFVIEPAD 118 (319)
T ss_pred cCCCcCCHHHHHHHHHHHhhCcccCCceEEEecchh
Confidence 3 23556654333221 22345666655443
|
|
| >TIGR03499 FlhF flagellar biosynthetic protein FlhF | Back alignment and domain information |
|---|
Probab=83.17 E-value=1.8 Score=40.80 Aligned_cols=20 Identities=35% Similarity=0.395 Sum_probs=15.6
Q ss_pred CCcEEEEecCCCcchhhhhH
Q psy9620 150 GSNMVGVAQTGSGKTLAYML 169 (453)
Q Consensus 150 g~d~li~a~TGsGKT~~~~l 169 (453)
++.+++++|||+|||.+...
T Consensus 194 ~~vi~~vGptGvGKTTt~~k 213 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAK 213 (282)
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 34678999999999976543
|
|
| >COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=83.13 E-value=3.2 Score=44.24 Aligned_cols=71 Identities=20% Similarity=0.200 Sum_probs=52.4
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhcC
Q psy9620 135 RPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGS 211 (453)
Q Consensus 135 ~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~~ 211 (453)
.+++-|.+++... ...++|.|..|||||.+..--+...+.. ....+ ..+|.++=|+-.|.++.+.+.++..
T Consensus 2 ~Ln~~Q~~av~~~--~gp~lV~AGaGsGKT~vlt~Ria~li~~-~~v~p---~~Il~vTFTnkAA~em~~Rl~~~~~ 72 (655)
T COG0210 2 KLNPEQREAVLHP--DGPLLVLAGAGSGKTRVLTERIAYLIAA-GGVDP---EQILAITFTNKAAAEMRERLLKLLG 72 (655)
T ss_pred CCCHHHHHHHhcC--CCCeEEEECCCCCchhhHHHHHHHHHHc-CCcCh---HHeeeeechHHHHHHHHHHHHHHhC
Confidence 5789999998776 6678999999999997754444333332 22222 2388899999999999999998864
|
|
| >cd00032 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent aspartate-directed proteases that mediate programmed cell death (apoptosis) | Back alignment and domain information |
|---|
Probab=82.90 E-value=23 Score=32.38 Aligned_cols=85 Identities=14% Similarity=0.217 Sum_probs=61.6
Q ss_pred CCCcEEEEEcc------------hhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhc---CCCcEEEEeccCccC
Q psy9620 299 DENKTIIFAET------------KRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRN---GRAGILVATDVAARG 363 (453)
Q Consensus 299 ~~~~~lVF~~s------------~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~---g~~~vLvaT~~~~~G 363 (453)
+.+.+||+.+. ..+++.|++.|+..++.|. ++.+++..+-.+++++|.+ .....+|+. +++.|
T Consensus 8 ~~g~aLII~n~~f~~~~~~r~g~~~D~~~l~~~f~~lgF~V~-~~~nlt~~~~~~~l~~f~~~~~~~~d~~v~~-~~sHG 85 (243)
T cd00032 8 RRGLALIINNENFDKGLKDRDGTDVDAENLTKLFESLGYEVE-VKNNLTAEEILEELKEFASPDHSDSDSFVCV-ILSHG 85 (243)
T ss_pred CCCEEEEEechhcCCCCCCCCChHHHHHHHHHHHHHCCCEEE-EeCCCCHHHHHHHHHHHHhccCCCCCeeEEE-ECCCC
Confidence 34567777764 4679999999999999885 5778899999999999985 233444444 67888
Q ss_pred CCCCCCcEEEEcC-CCCChhHHHHhhh
Q psy9620 364 LDVDDVKFVINFD-YPNNSEDYIHRIG 389 (453)
Q Consensus 364 iDip~v~~VI~~d-~p~s~~~y~qr~G 389 (453)
.. +.|+-.| .+-++++.++...
T Consensus 86 ~~----~~l~~~D~~~v~l~~i~~~f~ 108 (243)
T cd00032 86 EE----GGIYGTDGDVVPIDEITSLFN 108 (243)
T ss_pred CC----CEEEEecCcEEEHHHHHHhhc
Confidence 65 6677666 5556677766664
|
Caspases are synthesized as inactive zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologs. |
| >PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A | Back alignment and domain information |
|---|
Probab=82.87 E-value=0.66 Score=43.36 Aligned_cols=19 Identities=32% Similarity=0.462 Sum_probs=16.8
Q ss_pred hcCCcEEEEecCCCcchhh
Q psy9620 148 MSGSNMVGVAQTGSGKTLA 166 (453)
Q Consensus 148 ~~g~d~li~a~TGsGKT~~ 166 (453)
.+++.++++||+|+|||..
T Consensus 31 ~~~~pvLl~G~~GtGKT~l 49 (272)
T PF12775_consen 31 SNGRPVLLVGPSGTGKTSL 49 (272)
T ss_dssp HCTEEEEEESSTTSSHHHH
T ss_pred HcCCcEEEECCCCCchhHH
Confidence 3688999999999999964
|
|
| >PRK05642 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
Probab=82.65 E-value=5.9 Score=36.09 Aligned_cols=45 Identities=20% Similarity=0.217 Sum_probs=26.0
Q ss_pred CcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHH
Q psy9620 151 SNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQE 204 (453)
Q Consensus 151 ~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~ 204 (453)
..++++|++|+|||.... .+...+.. .+.+++++. ..++......
T Consensus 46 ~~l~l~G~~G~GKTHLl~-a~~~~~~~-------~~~~v~y~~-~~~~~~~~~~ 90 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQ-AACLRFEQ-------RGEPAVYLP-LAELLDRGPE 90 (234)
T ss_pred CeEEEECCCCCCHHHHHH-HHHHHHHh-------CCCcEEEee-HHHHHhhhHH
Confidence 467899999999995522 22222222 234466654 4566554333
|
|
| >KOG1806|consensus | Back alignment and domain information |
|---|
Probab=82.59 E-value=2.6 Score=45.54 Aligned_cols=72 Identities=19% Similarity=0.185 Sum_probs=54.8
Q ss_pred CCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHh
Q psy9620 132 GFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDF 209 (453)
Q Consensus 132 g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~ 209 (453)
++-.++|-|-+++..-..-.++.+.+|+|+|||-...- ++..+.+.. ..++++|++....-.+|..+.+.++
T Consensus 735 n~v~ft~~qveai~sg~qpgltmvvgppgtgktd~avq-il~~lyhn~-----p~qrTlivthsnqaln~lfeKi~~~ 806 (1320)
T KOG1806|consen 735 NQVKFTPTQVEAILSGMQPGLTMVVGPPGTGKTDVAVQ-ILSVLYHNS-----PNQRTLIVTHSNQALNQLFEKIMAL 806 (1320)
T ss_pred chhccCHHHHHHHHhcCCCCceeeecCCCCCCcchhhh-hhhhhhhcC-----CCcceEEEEecccchhHHHHHHHhc
Confidence 34567999999998888888999999999999976532 344444432 4678999999988888877766654
|
|
| >COG1074 RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=82.44 E-value=2.5 Score=47.88 Aligned_cols=57 Identities=26% Similarity=0.344 Sum_probs=42.4
Q ss_pred cCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHH
Q psy9620 149 SGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARD 208 (453)
Q Consensus 149 ~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~ 208 (453)
.+.+++|.|..|||||.+...-++..+.... +-.-..+|||+-|+.-+..+...+..
T Consensus 15 ~~~~~lveASAGSGKT~vL~~r~lrlLl~~~---~~~v~~ILvvTFT~aAa~Emk~RI~~ 71 (1139)
T COG1074 15 PGQSVLVEASAGTGKTFVLAERVLRLLLEGG---PLDVDEILVVTFTKAAAAEMKERIRD 71 (1139)
T ss_pred CCCcEEEEEcCCCCchhHHHHHHHHHHhhcC---CCChhHeeeeeccHHHHHHHHHHHHH
Confidence 5779999999999999886666666555532 11233599999999999988776654
|
|
| >TIGR02655 circ_KaiC circadian clock protein KaiC | Back alignment and domain information |
|---|
Probab=82.26 E-value=2 Score=43.89 Aligned_cols=56 Identities=27% Similarity=0.230 Sum_probs=38.1
Q ss_pred cCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhcCC
Q psy9620 149 SGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGSS 212 (453)
Q Consensus 149 ~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~~~ 212 (453)
.|+.+++.+++|+|||+..+--+...+.+ .+-.+|+++- .|-..++.+.+..++..
T Consensus 20 ~g~~~Li~G~pGsGKT~la~qfl~~g~~~-------~ge~~lyvs~-eE~~~~l~~~~~~~G~~ 75 (484)
T TIGR02655 20 IGRSTLVSGTSGTGKTLFSIQFLYNGIIH-------FDEPGVFVTF-EESPQDIIKNARSFGWD 75 (484)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHh-------CCCCEEEEEE-ecCHHHHHHHHHHcCCC
Confidence 46789999999999997654444443332 1234777764 47777888888887643
|
Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. |
| >PF05729 NACHT: NACHT domain | Back alignment and domain information |
|---|
Probab=82.23 E-value=20 Score=29.94 Aligned_cols=43 Identities=14% Similarity=0.247 Sum_probs=24.8
Q ss_pred CCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHH
Q psy9620 300 ENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEF 346 (453)
Q Consensus 300 ~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f 346 (453)
.-+++|.|.+...-+ +...+... ....+. .++..+..+.++++
T Consensus 120 ~~~liit~r~~~~~~-~~~~~~~~--~~~~l~-~~~~~~~~~~~~~~ 162 (166)
T PF05729_consen 120 GVKLIITSRPRAFPD-LRRRLKQA--QILELE-PFSEEDIKQYLRKY 162 (166)
T ss_pred CCeEEEEEcCChHHH-HHHhcCCC--cEEEEC-CCCHHHHHHHHHHH
Confidence 457777776655444 55555443 344454 46777776666554
|
|
| >COG3972 Superfamily I DNA and RNA helicases [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.15 E-value=1.6 Score=43.31 Aligned_cols=80 Identities=16% Similarity=0.094 Sum_probs=53.0
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHH
Q psy9620 123 YVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQI 202 (453)
Q Consensus 123 ~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~ 202 (453)
.+++.++.. +..+...|.++.-..-.|.. .|.+-.|||||...++-+.. +... ...-+++|.+=|+.|+.++
T Consensus 151 a~l~~iesk-IanfD~~Q~kaa~~~~~G~q-rIrGLAGSGKT~~La~Kaa~-lh~k-----nPd~~I~~Tfftk~L~s~~ 222 (660)
T COG3972 151 ALLDTIESK-IANFDTDQTKAAFQSGFGKQ-RIRGLAGSGKTELLAHKAAE-LHSK-----NPDSRIAFTFFTKILASTM 222 (660)
T ss_pred HHHHHHHHH-HhcccchhheeeeecCCchh-hhhcccCCCchhHHHHHHHH-HhcC-----CCCceEEEEeehHHHHHHH
Confidence 344444432 45667778777655555655 67888999999764333322 2211 2355799999999999999
Q ss_pred HHHHHHhc
Q psy9620 203 QEVARDFG 210 (453)
Q Consensus 203 ~~~~~~~~ 210 (453)
...+.+|+
T Consensus 223 r~lv~~F~ 230 (660)
T COG3972 223 RTLVPEFF 230 (660)
T ss_pred HHHHHHHH
Confidence 99888875
|
|
| >TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase | Back alignment and domain information |
|---|
Probab=82.08 E-value=5.7 Score=42.92 Aligned_cols=83 Identities=17% Similarity=0.341 Sum_probs=57.9
Q ss_pred hHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhc---CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEec-cCcc
Q psy9620 287 KLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNY---GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATD-VAAR 362 (453)
Q Consensus 287 ~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~---~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~-~~~~ 362 (453)
.++.++..+......++|+.+|+++-+.+....|... ++.+..++|+.+..+|..+ + ...+|||+|+ .+..
T Consensus 68 ~~LPiL~~l~~~~~~~aL~l~PtraLa~q~~~~l~~l~~~~i~v~~~~Gdt~~~~r~~i----~-~~~~IivtTPd~L~~ 142 (742)
T TIGR03817 68 YQLPVLSALADDPRATALYLAPTKALAADQLRAVRELTLRGVRPATYDGDTPTEERRWA----R-EHARYVLTNPDMLHR 142 (742)
T ss_pred HHHHHHHHHhhCCCcEEEEEcChHHHHHHHHHHHHHhccCCeEEEEEeCCCCHHHHHHH----h-cCCCEEEEChHHHHH
Confidence 3444555554444568999999999999999988865 5678889999998776433 2 2478999995 3332
Q ss_pred CC---------CCCCCcEEEE
Q psy9620 363 GL---------DVDDVKFVIN 374 (453)
Q Consensus 363 Gi---------Dip~v~~VI~ 374 (453)
++ .+.++++||.
T Consensus 143 ~~L~~~~~~~~~l~~l~~vVi 163 (742)
T TIGR03817 143 GILPSHARWARFLRRLRYVVI 163 (742)
T ss_pred hhccchhHHHHHHhcCCEEEE
Confidence 21 1567787774
|
A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA. |
| >PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX | Back alignment and domain information |
|---|
Probab=82.04 E-value=1.1 Score=39.75 Aligned_cols=19 Identities=26% Similarity=0.553 Sum_probs=13.8
Q ss_pred cCCcEEEEecCCCcchhhh
Q psy9620 149 SGSNMVGVAQTGSGKTLAY 167 (453)
Q Consensus 149 ~g~d~li~a~TGsGKT~~~ 167 (453)
.++++++.+|.|+|||+.+
T Consensus 21 G~h~lLl~GppGtGKTmlA 39 (206)
T PF01078_consen 21 GGHHLLLIGPPGTGKTMLA 39 (206)
T ss_dssp CC--EEEES-CCCTHHHHH
T ss_pred CCCCeEEECCCCCCHHHHH
Confidence 5789999999999999653
|
This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B. |
| >PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=81.91 E-value=2.4 Score=42.10 Aligned_cols=20 Identities=30% Similarity=0.313 Sum_probs=15.9
Q ss_pred CCcEEEEecCCCcchhhhhH
Q psy9620 150 GSNMVGVAQTGSGKTLAYML 169 (453)
Q Consensus 150 g~d~li~a~TGsGKT~~~~l 169 (453)
++-+.+++|||+|||.+...
T Consensus 191 g~vi~lvGpnG~GKTTtlak 210 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAK 210 (420)
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 45578999999999977543
|
|
| >COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=81.60 E-value=2.2 Score=39.51 Aligned_cols=55 Identities=29% Similarity=0.350 Sum_probs=36.3
Q ss_pred cCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhcCC
Q psy9620 149 SGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGSS 212 (453)
Q Consensus 149 ~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~~~ 212 (453)
.|+.+++.+++|||||+-.+-.+...+.. +-.++++ -+.+...++.+.+..++..
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~qfl~~~~~~--------ge~vlyv-s~~e~~~~l~~~~~~~g~d 76 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFALQFLYEGARE--------GEPVLYV-STEESPEELLENARSFGWD 76 (260)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHHhc--------CCcEEEE-EecCCHHHHHHHHHHcCCC
Confidence 57889999999999995433333322222 2335554 5667788888888887543
|
|
| >TIGR02655 circ_KaiC circadian clock protein KaiC | Back alignment and domain information |
|---|
Probab=81.55 E-value=2 Score=43.82 Aligned_cols=52 Identities=23% Similarity=0.217 Sum_probs=36.7
Q ss_pred CCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhc
Q psy9620 150 GSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFG 210 (453)
Q Consensus 150 g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~ 210 (453)
|.-+++.+|+|+|||+..+--+...+. .+-++++++ .-|-..|+...+..++
T Consensus 263 gs~~li~G~~G~GKt~l~~~f~~~~~~--------~ge~~~y~s-~eEs~~~i~~~~~~lg 314 (484)
T TIGR02655 263 DSIILATGATGTGKTLLVSKFLENACA--------NKERAILFA-YEESRAQLLRNAYSWG 314 (484)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHH--------CCCeEEEEE-eeCCHHHHHHHHHHcC
Confidence 457899999999999754433333322 244578776 6777889988888875
|
Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. |
| >PRK14974 cell division protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=81.47 E-value=7.5 Score=37.48 Aligned_cols=50 Identities=28% Similarity=0.300 Sum_probs=27.4
Q ss_pred cEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEc-CC--HHHHHHHHHHHHHh
Q psy9620 152 NMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLA-PT--RELAQQIQEVARDF 209 (453)
Q Consensus 152 d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~-Pt--r~La~q~~~~~~~~ 209 (453)
-+++++++|+|||.+..-.+ ..+.. .+.+++++. .| .....|+......+
T Consensus 142 vi~~~G~~GvGKTTtiakLA-~~l~~-------~g~~V~li~~Dt~R~~a~eqL~~~a~~l 194 (336)
T PRK14974 142 VIVFVGVNGTGKTTTIAKLA-YYLKK-------NGFSVVIAAGDTFRAGAIEQLEEHAERL 194 (336)
T ss_pred EEEEEcCCCCCHHHHHHHHH-HHHHH-------cCCeEEEecCCcCcHHHHHHHHHHHHHc
Confidence 47789999999997643322 22322 233455554 32 34445555545444
|
|
| >PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional | Back alignment and domain information |
|---|
Probab=81.43 E-value=5.4 Score=44.45 Aligned_cols=59 Identities=12% Similarity=0.145 Sum_probs=53.0
Q ss_pred CCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhc--CCCcEEEEec
Q psy9620 300 ENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRN--GRAGILVATD 358 (453)
Q Consensus 300 ~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~--g~~~vLvaT~ 358 (453)
.+.+||.+|++.-+.+-...|...++.+..++++++..++..++..+.. +..+||++|+
T Consensus 500 ~GiTLVISPLiSLmqDQV~~L~~~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTP 560 (1195)
T PLN03137 500 PGITLVISPLVSLIQDQIMNLLQANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTP 560 (1195)
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEECh
Confidence 4589999999999987777777889999999999999999999999887 8999999997
|
|
| >PRK13766 Hef nuclease; Provisional | Back alignment and domain information |
|---|
Probab=81.31 E-value=10 Score=41.25 Aligned_cols=72 Identities=26% Similarity=0.389 Sum_probs=53.4
Q ss_pred CCCCcEEEEEcchhHHHHHHHHHHhc-CC---eEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecc------CccCCCCC
Q psy9620 298 KDENKTIIFAETKRKVDKITKSIQNY-GW---AAVGIHGDKSQQERDYVLKEFRNGRAGILVATDV------AARGLDVD 367 (453)
Q Consensus 298 ~~~~~~lVF~~s~~~~~~l~~~L~~~-~~---~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~------~~~GiDip 367 (453)
...+++||.|+++..+++.++.+... +. .+..++|+.+..+|..+.. ..+|+|+|.- +..-+++.
T Consensus 56 ~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~r~~~~~-----~~~iiv~T~~~l~~~l~~~~~~~~ 130 (773)
T PRK13766 56 KKGGKVLILAPTKPLVEQHAEFFRKFLNIPEEKIVVFTGEVSPEKRAELWE-----KAKVIVATPQVIENDLIAGRISLE 130 (773)
T ss_pred hCCCeEEEEeCcHHHHHHHHHHHHHHhCCCCceEEEEeCCCCHHHHHHHHh-----CCCEEEECHHHHHHHHHcCCCChh
Confidence 34679999999999998888887754 33 7888999999888765543 3579999962 23346677
Q ss_pred CCcEEEE
Q psy9620 368 DVKFVIN 374 (453)
Q Consensus 368 ~v~~VI~ 374 (453)
++++||.
T Consensus 131 ~~~liVv 137 (773)
T PRK13766 131 DVSLLIF 137 (773)
T ss_pred hCcEEEE
Confidence 7887774
|
|
| >PRK14086 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=81.06 E-value=37 Score=35.58 Aligned_cols=60 Identities=15% Similarity=0.349 Sum_probs=30.8
Q ss_pred hhHHHHHHhhhcCCCCcEEEEEcch--hHHHHHHHHHHhc-CCeEEEEcCCCCHHHHHHHHHHHh
Q psy9620 286 NKLFGLLNDISSKDENKTIIFAETK--RKVDKITKSIQNY-GWAAVGIHGDKSQQERDYVLKEFR 347 (453)
Q Consensus 286 ~~l~~ll~~~~~~~~~~~lVF~~s~--~~~~~l~~~L~~~-~~~~~~~h~~~~~~~r~~~~~~f~ 347 (453)
..|..+++.+... ++-||++..+ .+...+-..|... .+...+-=...+.+.|..+++...
T Consensus 397 eeLF~l~N~l~e~--gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka 459 (617)
T PRK14086 397 EEFFHTFNTLHNA--NKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKA 459 (617)
T ss_pred HHHHHHHHHHHhc--CCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHH
Confidence 4566777766533 3445555544 2333333334332 333333333457788888888754
|
|
| >COG4185 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=80.18 E-value=1 Score=37.78 Aligned_cols=38 Identities=29% Similarity=0.406 Sum_probs=25.3
Q ss_pred EEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHH
Q psy9620 153 MVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQI 202 (453)
Q Consensus 153 ~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~ 202 (453)
.|+.+|.|||||..|.......+ + .++++.+-++|.|+
T Consensus 5 ~IvaG~NGsGKstv~~~~~~~~~-----------~-~~~~VN~D~iA~~i 42 (187)
T COG4185 5 DIVAGPNGSGKSTVYASTLAPLL-----------P-GIVFVNADEIAAQI 42 (187)
T ss_pred EEEecCCCCCceeeeeccchhhc-----------C-CeEEECHHHHhhhc
Confidence 36779999999988865443211 1 45666777777664
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 453 | ||||
| 4a4d_A | 253 | Crystal Structure Of The N-Terminal Domain Of The H | 1e-53 | ||
| 4a4d_A | 253 | Crystal Structure Of The N-Terminal Domain Of The H | 2e-10 | ||
| 2i4i_A | 417 | Crystal Structure Of Human Dead-Box Rna Helicase Dd | 4e-50 | ||
| 2db3_A | 434 | Structural Basis For Rna Unwinding By The Dead-Box | 1e-49 | ||
| 3fe2_A | 242 | Human Dead-Box Rna Helicase Ddx5 (P68), Conserved D | 6e-49 | ||
| 3fe2_A | 242 | Human Dead-Box Rna Helicase Ddx5 (P68), Conserved D | 2e-11 | ||
| 2jgn_A | 185 | Ddx3 Helicase Domain Length = 185 | 2e-34 | ||
| 2j0u_B | 374 | The Crystal Structure Of Eif4aiii-Barentsz Complex | 1e-30 | ||
| 2j0u_A | 374 | The Crystal Structure Of Eif4aiii-Barentsz Complex | 2e-30 | ||
| 2j0q_A | 410 | The Crystal Structure Of The Exon Junction Complex | 2e-30 | ||
| 2xb2_A | 411 | Crystal Structure Of The Core Mago-Y14-Eif4aiii-Bar | 3e-30 | ||
| 2hxy_A | 391 | Crystal Structure Of Human Apo-Eif4aiii Length = 39 | 3e-30 | ||
| 2hyi_C | 413 | Structure Of The Human Exon Junction Complex With A | 3e-30 | ||
| 2z0m_A | 337 | Crystal Structure Of Hypothetical Atp-Dependent Rna | 7e-30 | ||
| 1s2m_A | 400 | Crystal Structure Of The Dead Box Protein Dhh1p Len | 7e-30 | ||
| 3pew_A | 395 | S. Cerevisiae Dbp5 L327v Bound To Rna And Adp Bef3 | 1e-28 | ||
| 3pey_A | 395 | S. Cerevisiae Dbp5 Bound To Rna And Adp Bef3 Length | 1e-28 | ||
| 1hv8_A | 367 | Crystal Structure Of A Dead Box Protein From The Hy | 9e-28 | ||
| 2p6n_A | 191 | Human Dead-box Rna Helicase Ddx41, Helicase Domain | 4e-25 | ||
| 2vso_A | 395 | Crystal Structure Of A Translation Initiation Compl | 8e-25 | ||
| 3eiq_A | 414 | Crystal Structure Of Pdcd4-eif4a Length = 414 | 4e-24 | ||
| 2hjv_A | 163 | Structure Of The Second Domain (Residues 207-368) O | 5e-24 | ||
| 2zu6_A | 388 | Crystal Structure Of The Eif4a-Pdcd4 Complex Length | 6e-24 | ||
| 1xtj_A | 386 | Structure Of Human Uap56 In Complex With Adp Length | 1e-23 | ||
| 1xtk_A | 390 | Structure Of Decd To Dead Mutation Of Human Uap56 L | 1e-23 | ||
| 3fho_B | 508 | Structure Of S. Pombe Dbp5 Length = 508 | 1e-23 | ||
| 1fuu_A | 394 | Yeast Initiation Factor 4a Length = 394 | 1e-23 | ||
| 1xti_A | 391 | Structure Of Wildtype Human Uap56 Length = 391 | 1e-23 | ||
| 3ews_A | 445 | Human Dead-Box Rna-Helicase Ddx19 In Complex With A | 1e-22 | ||
| 3fht_A | 412 | Crystal Structure Of Human Dbp5 In Complex With Amp | 1e-22 | ||
| 3g0h_A | 424 | Human Dead-box Rna Helicase Ddx19, In Complex With | 1e-22 | ||
| 3fmp_B | 479 | Crystal Structure Of The Nucleoporin Nup214 In Comp | 1e-22 | ||
| 3iuy_A | 228 | Crystal Structure Of Ddx53 Dead-Box Domain Length = | 2e-22 | ||
| 2wax_A | 193 | Structure Of The Human Ddx6 C-Terminal Domain In Co | 2e-20 | ||
| 1fuk_A | 165 | Crystal Structure Of The Carboxy Terminal Domain Of | 5e-20 | ||
| 2kbf_A | 187 | Solution Structure Of Carboxyl-Terminal Domain Of D | 5e-18 | ||
| 2yjt_D | 170 | Crystal Structure Of E. Coli Dead-Box Protein Srmb | 9e-18 | ||
| 3gfp_A | 189 | Structure Of The C-Terminal Domain Of The Dead-Box | 3e-17 | ||
| 3peu_A | 188 | S. Cerevisiae Dbp5 L327v C-Terminal Domain Bound To | 3e-17 | ||
| 1t5i_A | 172 | Crystal Structure Of The C-Terminal Domain Of Uap56 | 4e-17 | ||
| 3sqx_A | 512 | Structure Of Mss116p (Nte And C-Tail Double Deletio | 2e-16 | ||
| 3i5x_A | 563 | Structure Of Mss116p Bound To Ssrna And Amp-Pnp Len | 2e-16 | ||
| 1wrb_A | 253 | Crystal Structure Of The N-Terminal Reca-Like Domai | 3e-16 | ||
| 1wrb_A | 253 | Crystal Structure Of The N-Terminal Reca-Like Domai | 2e-05 | ||
| 2rb4_A | 175 | Crystal Structure Of The Helicase Domain Of Human D | 3e-16 | ||
| 3sqw_A | 579 | Structure Of Mss116p (Nte Deletion) Bound To Ssrna | 5e-16 | ||
| 3i32_A | 300 | Dimeric Structure Of A Hera Helicase Fragment Inclu | 2e-15 | ||
| 3eaq_A | 212 | Novel Dimerization Motif In The Dead Box Rna Helica | 3e-15 | ||
| 3dkp_A | 245 | Human Dead-Box Rna-Helicase Ddx52, Conserved Domain | 1e-14 | ||
| 2gxq_A | 207 | Hera N-Terminal Domain In Complex With Amp, Crystal | 2e-14 | ||
| 4db4_A | 256 | Mss116p Dead-Box Helicase Domain 2 Bound To A Chima | 3e-14 | ||
| 4db2_C | 257 | Mss116p Dead-Box Helicase Domain 2 Bound To An Rna | 3e-14 | ||
| 4db2_A | 257 | Mss116p Dead-Box Helicase Domain 2 Bound To An Rna | 3e-14 | ||
| 3mwj_A | 207 | Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Ap | 6e-14 | ||
| 2pl3_A | 236 | Human Dead-Box Rna Helicase Ddx10, Dead Domain In C | 9e-14 | ||
| 3ber_A | 249 | Human Dead-Box Rna-Helicase Ddx47, Conserved Domain | 1e-13 | ||
| 3ly5_A | 262 | Ddx18 Dead-Domain Length = 262 | 4e-11 | ||
| 1q0u_A | 219 | Crystal Structure Of The Bstdead N-Terminal Domain | 1e-10 | ||
| 1vec_A | 206 | Crystal Structure Of The N-Terminal Domain Of RckP5 | 3e-10 | ||
| 3bor_A | 237 | Crystal Structure Of The Deadc Domain Of Human Tran | 7e-10 | ||
| 2kbe_A | 226 | Solution Structure Of Amino-Terminal Domain Of Dbp5 | 3e-09 | ||
| 1oyy_A | 523 | Structure Of The Recq Catalytic Core Bound To Atp-G | 4e-09 | ||
| 2oxc_A | 230 | Human Dead-Box Rna Helicase Ddx20, Dead Domain In C | 1e-08 | ||
| 1oyw_A | 523 | Structure Of The Recq Catalytic Core Length = 523 | 2e-08 | ||
| 1wp9_A | 494 | Crystal Structure Of Pyrococcus Furiosus Hef Helica | 2e-08 | ||
| 1qva_A | 223 | Yeast Initiation Factor 4a N-Terminal Domain Length | 2e-08 | ||
| 2g9n_A | 221 | Structure Of The Dead Domain Of Human Eukaryotic In | 2e-08 | ||
| 1qde_A | 224 | Crystal Structure Of The Atpase Domain Of Translati | 3e-08 | ||
| 3fmo_B | 300 | Crystal Structure Of The Nucleoporin Nup214 In Comp | 8e-08 | ||
| 3fhc_B | 235 | Crystal Structure Of Human Dbp5 In Complex With Nup | 1e-07 | ||
| 2v1x_A | 591 | Crystal Structure Of Human Recq-Like Dna Helicase L | 3e-07 | ||
| 1t6n_A | 220 | Crystal Structure Of The N-Terminal Domain Of Human | 5e-07 | ||
| 4gl2_A | 699 | Structural Basis For Dsrna Duplex Backbone Recognit | 8e-06 | ||
| 2fwr_A | 472 | Structure Of Archaeoglobus Fulgidis Xpb Length = 47 | 4e-05 | ||
| 3uwx_B | 683 | Crystal Structure Of Uvra-Uvrb Complex Length = 683 | 5e-05 | ||
| 1d9z_A | 657 | Crystal Structure Of The Dna Repair Protein Uvrb In | 6e-05 | ||
| 1d9x_A | 658 | Crystal Structure Of The Dna Repair Protein Uvrb Le | 7e-05 | ||
| 2fdc_A | 658 | Structural Basis Of Dna Damage Recognition And Proc | 7e-05 | ||
| 1t5l_A | 658 | Crystal Structure Of The Dna Repair Protein Uvrb Po | 7e-05 | ||
| 3tbk_A | 555 | Mouse Rig-I Atpase Domain Length = 555 | 7e-05 | ||
| 2fzl_A | 219 | Structure Of C-Terminal Domain Of Archaeoglobus Ful | 1e-04 | ||
| 4i1s_A | 243 | Melanoma Differentiation Associated Protein-5 Helic | 6e-04 |
| >pdb|4A4D|A Chain A, Crystal Structure Of The N-Terminal Domain Of The Human Dead-Box Rna Helicase Ddx5 (P68) Length = 253 | Back alignment and structure |
|
| >pdb|4A4D|A Chain A, Crystal Structure Of The N-Terminal Domain Of The Human Dead-Box Rna Helicase Ddx5 (P68) Length = 253 | Back alignment and structure |
|
| >pdb|2I4I|A Chain A, Crystal Structure Of Human Dead-Box Rna Helicase Ddx3x Length = 417 | Back alignment and structure |
|
| >pdb|2DB3|A Chain A, Structural Basis For Rna Unwinding By The Dead-Box Protein Drosophila Vasa Length = 434 | Back alignment and structure |
|
| >pdb|3FE2|A Chain A, Human Dead-Box Rna Helicase Ddx5 (P68), Conserved Domain I In Complex With Adp Length = 242 | Back alignment and structure |
|
| >pdb|3FE2|A Chain A, Human Dead-Box Rna Helicase Ddx5 (P68), Conserved Domain I In Complex With Adp Length = 242 | Back alignment and structure |
|
| >pdb|2JGN|A Chain A, Ddx3 Helicase Domain Length = 185 | Back alignment and structure |
|
| >pdb|2J0U|B Chain B, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0 A Resolution Length = 374 | Back alignment and structure |
|
| >pdb|2J0U|A Chain A, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0 A Resolution Length = 374 | Back alignment and structure |
|
| >pdb|2J0Q|A Chain A, The Crystal Structure Of The Exon Junction Complex At 3.2 A Resolution Length = 410 | Back alignment and structure |
|
| >pdb|2XB2|A Chain A, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz- Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd Machinery Length = 411 | Back alignment and structure |
|
| >pdb|2HXY|A Chain A, Crystal Structure Of Human Apo-Eif4aiii Length = 391 | Back alignment and structure |
|
| >pdb|2HYI|C Chain C, Structure Of The Human Exon Junction Complex With A Trapped Dead-Box Helicase Bound To Rna Length = 413 | Back alignment and structure |
|
| >pdb|2Z0M|A Chain A, Crystal Structure Of Hypothetical Atp-Dependent Rna Helicase From Sulfolobus Tokodaii Length = 337 | Back alignment and structure |
|
| >pdb|1S2M|A Chain A, Crystal Structure Of The Dead Box Protein Dhh1p Length = 400 | Back alignment and structure |
|
| >pdb|3PEW|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Rna And Adp Bef3 Length = 395 | Back alignment and structure |
|
| >pdb|3PEY|A Chain A, S. Cerevisiae Dbp5 Bound To Rna And Adp Bef3 Length = 395 | Back alignment and structure |
|
| >pdb|1HV8|A Chain A, Crystal Structure Of A Dead Box Protein From The Hyperthermophile Methanococcus Jannaschii Length = 367 | Back alignment and structure |
|
| >pdb|2P6N|A Chain A, Human Dead-box Rna Helicase Ddx41, Helicase Domain Length = 191 | Back alignment and structure |
|
| >pdb|2VSO|A Chain A, Crystal Structure Of A Translation Initiation Complex Length = 395 | Back alignment and structure |
|
| >pdb|3EIQ|A Chain A, Crystal Structure Of Pdcd4-eif4a Length = 414 | Back alignment and structure |
|
| >pdb|2HJV|A Chain A, Structure Of The Second Domain (Residues 207-368) Of The Bacillus Subtilis Yxin Protein Length = 163 | Back alignment and structure |
|
| >pdb|2ZU6|A Chain A, Crystal Structure Of The Eif4a-Pdcd4 Complex Length = 388 | Back alignment and structure |
|
| >pdb|1XTJ|A Chain A, Structure Of Human Uap56 In Complex With Adp Length = 386 | Back alignment and structure |
|
| >pdb|1XTK|A Chain A, Structure Of Decd To Dead Mutation Of Human Uap56 Length = 390 | Back alignment and structure |
|
| >pdb|1FUU|A Chain A, Yeast Initiation Factor 4a Length = 394 | Back alignment and structure |
|
| >pdb|1XTI|A Chain A, Structure Of Wildtype Human Uap56 Length = 391 | Back alignment and structure |
|
| >pdb|3EWS|A Chain A, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp Length = 445 | Back alignment and structure |
|
| >pdb|3FHT|A Chain A, Crystal Structure Of Human Dbp5 In Complex With Amppnp And Rna Length = 412 | Back alignment and structure |
|
| >pdb|3G0H|A Chain A, Human Dead-box Rna Helicase Ddx19, In Complex With An Atp-analogue And Rna Length = 424 | Back alignment and structure |
|
| >pdb|3FMP|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex With The Dead- Box Helicase Ddx19 Length = 479 | Back alignment and structure |
|
| >pdb|3IUY|A Chain A, Crystal Structure Of Ddx53 Dead-Box Domain Length = 228 | Back alignment and structure |
|
| >pdb|2WAX|A Chain A, Structure Of The Human Ddx6 C-Terminal Domain In Complex With An Edc3-Fdf Peptide Length = 193 | Back alignment and structure |
|
| >pdb|1FUK|A Chain A, Crystal Structure Of The Carboxy Terminal Domain Of Yeast Eif4a Length = 165 | Back alignment and structure |
|
| >pdb|2KBF|A Chain A, Solution Structure Of Carboxyl-Terminal Domain Of Dbp5p Length = 187 | Back alignment and structure |
|
| >pdb|2YJT|D Chain D, Crystal Structure Of E. Coli Dead-Box Protein Srmb Bound To Regulator Of Ribonuclease Activity A (Rraa) Length = 170 | Back alignment and structure |
|
| >pdb|3GFP|A Chain A, Structure Of The C-Terminal Domain Of The Dead-Box Protein Dbp5 Length = 189 | Back alignment and structure |
|
| >pdb|3PEU|A Chain A, S. Cerevisiae Dbp5 L327v C-Terminal Domain Bound To Gle1 H337r And Ip6 Length = 188 | Back alignment and structure |
|
| >pdb|1T5I|A Chain A, Crystal Structure Of The C-Terminal Domain Of Uap56 Length = 172 | Back alignment and structure |
|
| >pdb|3SQX|A Chain A, Structure Of Mss116p (Nte And C-Tail Double Deletion) Bound To Ssrna And Amp-Pnp Length = 512 | Back alignment and structure |
|
| >pdb|3I5X|A Chain A, Structure Of Mss116p Bound To Ssrna And Amp-Pnp Length = 563 | Back alignment and structure |
|
| >pdb|1WRB|A Chain A, Crystal Structure Of The N-Terminal Reca-Like Domain Of Djvlgb, A Pranarian Vasa-Like Rna Helicase Length = 253 | Back alignment and structure |
|
| >pdb|1WRB|A Chain A, Crystal Structure Of The N-Terminal Reca-Like Domain Of Djvlgb, A Pranarian Vasa-Like Rna Helicase Length = 253 | Back alignment and structure |
|
| >pdb|2RB4|A Chain A, Crystal Structure Of The Helicase Domain Of Human Ddx25 Rna Helicase Length = 175 | Back alignment and structure |
|
| >pdb|3SQW|A Chain A, Structure Of Mss116p (Nte Deletion) Bound To Ssrna And Amp-Pnp Length = 579 | Back alignment and structure |
|
| >pdb|3I32|A Chain A, Dimeric Structure Of A Hera Helicase Fragment Including The C-Terminal Reca Domain, The Dimerization Domain, And The Rna Binding Domain Length = 300 | Back alignment and structure |
|
| >pdb|3EAQ|A Chain A, Novel Dimerization Motif In The Dead Box Rna Helicase Hera Form 2, Complete Dimer, Symmetric Length = 212 | Back alignment and structure |
|
| >pdb|3DKP|A Chain A, Human Dead-Box Rna-Helicase Ddx52, Conserved Domain I In Complex With Adp Length = 245 | Back alignment and structure |
|
| >pdb|2GXQ|A Chain A, Hera N-Terminal Domain In Complex With Amp, Crystal Form 1 Length = 207 | Back alignment and structure |
|
| >pdb|4DB4|A Chain A, Mss116p Dead-Box Helicase Domain 2 Bound To A Chimaeric Rna-Dna Duplex Length = 256 | Back alignment and structure |
|
| >pdb|4DB2|C Chain C, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex Length = 257 | Back alignment and structure |
|
| >pdb|4DB2|A Chain A, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex Length = 257 | Back alignment and structure |
|
| >pdb|3MWJ|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Apo Form Length = 207 | Back alignment and structure |
|
| >pdb|2PL3|A Chain A, Human Dead-Box Rna Helicase Ddx10, Dead Domain In Complex With Adp Length = 236 | Back alignment and structure |
|
| >pdb|3BER|A Chain A, Human Dead-Box Rna-Helicase Ddx47, Conserved Domain I In Complex With Amp Length = 249 | Back alignment and structure |
|
| >pdb|3LY5|A Chain A, Ddx18 Dead-Domain Length = 262 | Back alignment and structure |
|
| >pdb|1Q0U|A Chain A, Crystal Structure Of The Bstdead N-Terminal Domain Length = 219 | Back alignment and structure |
|
| >pdb|1VEC|A Chain A, Crystal Structure Of The N-Terminal Domain Of RckP54, A Human Dead-Box Protein Length = 206 | Back alignment and structure |
|
| >pdb|3BOR|A Chain A, Crystal Structure Of The Deadc Domain Of Human Translation Initiation Factor 4a-2 Length = 237 | Back alignment and structure |
|
| >pdb|2KBE|A Chain A, Solution Structure Of Amino-Terminal Domain Of Dbp5p Length = 226 | Back alignment and structure |
|
| >pdb|1OYY|A Chain A, Structure Of The Recq Catalytic Core Bound To Atp-Gamma-S Length = 523 | Back alignment and structure |
|
| >pdb|2OXC|A Chain A, Human Dead-Box Rna Helicase Ddx20, Dead Domain In Complex With Adp Length = 230 | Back alignment and structure |
|
| >pdb|1OYW|A Chain A, Structure Of The Recq Catalytic Core Length = 523 | Back alignment and structure |
|
| >pdb|1WP9|A Chain A, Crystal Structure Of Pyrococcus Furiosus Hef Helicase Domain Length = 494 | Back alignment and structure |
|
| >pdb|1QVA|A Chain A, Yeast Initiation Factor 4a N-Terminal Domain Length = 223 | Back alignment and structure |
|
| >pdb|2G9N|A Chain A, Structure Of The Dead Domain Of Human Eukaryotic Initiation Factor 4a, Eif4a Length = 221 | Back alignment and structure |
|
| >pdb|1QDE|A Chain A, Crystal Structure Of The Atpase Domain Of Translation Initiation Factor 4a From Saccharomyces Cerevisiae-The Prototype Of The Dead Box Protein Family Length = 224 | Back alignment and structure |
|
| >pdb|3FMO|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex With The Dead- Box Helicase Ddx19 Length = 300 | Back alignment and structure |
|
| >pdb|3FHC|B Chain B, Crystal Structure Of Human Dbp5 In Complex With Nup214 Length = 235 | Back alignment and structure |
|
| >pdb|2V1X|A Chain A, Crystal Structure Of Human Recq-Like Dna Helicase Length = 591 | Back alignment and structure |
|
| >pdb|1T6N|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Uap56 Length = 220 | Back alignment and structure |
|
| >pdb|4GL2|A Chain A, Structural Basis For Dsrna Duplex Backbone Recognition By Mda5 Length = 699 | Back alignment and structure |
|
| >pdb|2FWR|A Chain A, Structure Of Archaeoglobus Fulgidis Xpb Length = 472 | Back alignment and structure |
|
| >pdb|3UWX|B Chain B, Crystal Structure Of Uvra-Uvrb Complex Length = 683 | Back alignment and structure |
|
| >pdb|1D9Z|A Chain A, Crystal Structure Of The Dna Repair Protein Uvrb In Complex With Atp Length = 657 | Back alignment and structure |
|
| >pdb|1D9X|A Chain A, Crystal Structure Of The Dna Repair Protein Uvrb Length = 658 | Back alignment and structure |
|
| >pdb|2FDC|A Chain A, Structural Basis Of Dna Damage Recognition And Processing By Uvrb: Crystal Structure Of A UvrbDNA COMPLEX Length = 658 | Back alignment and structure |
|
| >pdb|1T5L|A Chain A, Crystal Structure Of The Dna Repair Protein Uvrb Point Mutant Y96a Revealing A Novel Fold For Domain 2 Length = 658 | Back alignment and structure |
|
| >pdb|3TBK|A Chain A, Mouse Rig-I Atpase Domain Length = 555 | Back alignment and structure |
|
| >pdb|2FZL|A Chain A, Structure Of C-Terminal Domain Of Archaeoglobus Fulgidus Xpb Length = 219 | Back alignment and structure |
|
| >pdb|4I1S|A Chain A, Melanoma Differentiation Associated Protein-5 Helicase Domain Complex With Inhibitor Non-structural Protein V Length = 243 | Back alignment and structure |
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 453 | |||
| 2db3_A | 434 | ATP-dependent RNA helicase VASA; DEAD-BOX, protein | 100.0 | |
| 2i4i_A | 417 | ATP-dependent RNA helicase DDX3X; DEAD, structural | 100.0 | |
| 2j0s_A | 410 | ATP-dependent RNA helicase DDX48; mRNA processing, | 100.0 | |
| 3eiq_A | 414 | Eukaryotic initiation factor 4A-I; PDCD4, anti-onc | 100.0 | |
| 1s2m_A | 400 | Putative ATP-dependent RNA helicase DHH1; ATP-bind | 100.0 | |
| 3i5x_A | 563 | ATP-dependent RNA helicase MSS116; protein-RNA com | 100.0 | |
| 1xti_A | 391 | Probable ATP-dependent RNA helicase P47; alpha-bet | 100.0 | |
| 3fht_A | 412 | ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box | 100.0 | |
| 3pey_A | 395 | ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, A | 100.0 | |
| 1hv8_A | 367 | Putative ATP-dependent RNA helicase MJ0669; RNA-bi | 100.0 | |
| 3sqw_A | 579 | ATP-dependent RNA helicase MSS116, mitochondrial; | 100.0 | |
| 3fmp_B | 479 | ATP-dependent RNA helicase DDX19B; nuclear porin, | 100.0 | |
| 1fuu_A | 394 | Yeast initiation factor 4A; IF4A, helicase, DEAD-b | 100.0 | |
| 2v1x_A | 591 | ATP-dependent DNA helicase Q1; DNA strand annealin | 100.0 | |
| 1oyw_A | 523 | RECQ helicase, ATP-dependent DNA helicase; winged | 100.0 | |
| 3fho_A | 508 | ATP-dependent RNA helicase DBP5; mRNA export, ATPa | 100.0 | |
| 2z0m_A | 337 | 337AA long hypothetical ATP-dependent RNA helicase | 100.0 | |
| 2zj8_A | 720 | DNA helicase, putative SKI2-type helicase; RECA fo | 100.0 | |
| 2va8_A | 715 | SSO2462, SKI2-type helicase; hydrolase, DNA repair | 100.0 | |
| 3oiy_A | 414 | Reverse gyrase helicase domain; topoisomerase, DNA | 100.0 | |
| 2p6r_A | 702 | Afuhel308 helicase; protein-DNA complex, SF2 helic | 100.0 | |
| 3l9o_A | 1108 | ATP-dependent RNA helicase DOB1; REC-A fold, winge | 100.0 | |
| 2ykg_A | 696 | Probable ATP-dependent RNA helicase DDX58; hydrola | 100.0 | |
| 4a2p_A | 556 | RIG-I, retinoic acid inducible protein I; hydrolas | 100.0 | |
| 4f92_B | 1724 | U5 small nuclear ribonucleoprotein 200 kDa helica; | 100.0 | |
| 3tbk_A | 555 | RIG-I helicase domain; DECH helicase, ATP binding, | 100.0 | |
| 1tf5_A | 844 | Preprotein translocase SECA subunit; ATPase, helic | 100.0 | |
| 2xgj_A | 1010 | ATP-dependent RNA helicase DOB1; hydrolase-RNA com | 100.0 | |
| 1gku_B | 1054 | Reverse gyrase, TOP-RG; topoisomerase, DNA superco | 100.0 | |
| 4a2q_A | 797 | RIG-I, retinoic acid inducible protein I; hydrolas | 100.0 | |
| 1gm5_A | 780 | RECG; helicase, replication restart; HET: DNA ADP; | 100.0 | |
| 2whx_A | 618 | Serine protease/ntpase/helicase NS3; transcription | 100.0 | |
| 4f92_B | 1724 | U5 small nuclear ribonucleoprotein 200 kDa helica; | 100.0 | |
| 4ddu_A | 1104 | Reverse gyrase; topoisomerase, DNA supercoiling, a | 100.0 | |
| 4a2w_A | 936 | RIG-I, retinoic acid inducible protein I; hydrolas | 100.0 | |
| 2eyq_A | 1151 | TRCF, transcription-repair coupling factor; MFD, S | 100.0 | |
| 2jlq_A | 451 | Serine protease subunit NS3; ribonucleoprotein, nu | 100.0 | |
| 2wv9_A | 673 | Flavivirin protease NS2B regulatory subunit, FLAV | 100.0 | |
| 4a4z_A | 997 | Antiviral helicase SKI2; hydrolase, ATPase, mRNA d | 100.0 | |
| 1yks_A | 440 | Genome polyprotein [contains: flavivirin protease | 100.0 | |
| 4gl2_A | 699 | Interferon-induced helicase C domain-containing P; | 100.0 | |
| 1wp9_A | 494 | ATP-dependent RNA helicase, putative; ATPase, DNA | 100.0 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 100.0 | |
| 2fsf_A | 853 | Preprotein translocase SECA subunit; ATPase, DNA-R | 100.0 | |
| 2oca_A | 510 | DAR protein, ATP-dependent DNA helicase UVSW; ATP- | 100.0 | |
| 1nkt_A | 922 | Preprotein translocase SECA 1 subunit; preprotein | 100.0 | |
| 2z83_A | 459 | Helicase/nucleoside triphosphatase; hydrolase, mem | 100.0 | |
| 2fwr_A | 472 | DNA repair protein RAD25; DNA unwinding, XPB, DNA | 100.0 | |
| 2v6i_A | 431 | RNA helicase; membrane, hydrolase, transmembrane, | 100.0 | |
| 3jux_A | 822 | Protein translocase subunit SECA; protein transloc | 99.98 | |
| 3o8b_A | 666 | HCV NS3 protease/helicase; ntpase, RNA, translocat | 99.98 | |
| 2p6n_A | 191 | ATP-dependent RNA helicase DDX41; DEAD, structural | 99.98 | |
| 2jgn_A | 185 | DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosp | 99.97 | |
| 3rc3_A | 677 | ATP-dependent RNA helicase SUPV3L1, mitochondrial; | 99.97 | |
| 3h1t_A | 590 | Type I site-specific restriction-modification syst | 99.96 | |
| 2hjv_A | 163 | ATP-dependent RNA helicase DBPA; parallel alpha-be | 99.96 | |
| 1fuk_A | 165 | Eukaryotic initiation factor 4A; helicase, DEAD-bo | 99.96 | |
| 1t5i_A | 172 | C_terminal domain of A probable ATP-dependent RNA | 99.96 | |
| 3fe2_A | 242 | Probable ATP-dependent RNA helicase DDX5; DEAD, AD | 99.96 | |
| 2rb4_A | 175 | ATP-dependent RNA helicase DDX25; rossmann fold, s | 99.96 | |
| 3dmq_A | 968 | RNA polymerase-associated protein RAPA; SWF2/SNF2, | 99.95 | |
| 3eaq_A | 212 | Heat resistant RNA dependent ATPase; DEAD box RNA | 99.95 | |
| 1z63_A | 500 | Helicase of the SNF2/RAD54 hamily; protein-DNA com | 99.95 | |
| 3i32_A | 300 | Heat resistant RNA dependent ATPase; RNA helicase, | 99.94 | |
| 1c4o_A | 664 | DNA nucleotide excision repair enzyme UVRB; uvrabc | 99.94 | |
| 3dkp_A | 245 | Probable ATP-dependent RNA helicase DDX52; DEAD, A | 99.93 | |
| 2yjt_D | 170 | ATP-dependent RNA helicase SRMB, regulator of ribo | 99.88 | |
| 1z3i_X | 644 | Similar to RAD54-like; recombination ATPase helica | 99.93 | |
| 2d7d_A | 661 | Uvrabc system protein B; helicase, protein-DNA-ADP | 99.92 | |
| 3iuy_A | 228 | Probable ATP-dependent RNA helicase DDX53; REC-A-l | 99.92 | |
| 3fmo_B | 300 | ATP-dependent RNA helicase DDX19B; nuclear porin, | 99.92 | |
| 3mwy_W | 800 | Chromo domain-containing protein 1; SWI2/SNF2 ATPa | 99.92 | |
| 1wrb_A | 253 | DJVLGB; RNA helicase, DEAD BOX, VASA, structural g | 99.92 | |
| 2w00_A | 1038 | HSDR, R.ECOR124I; ATP-binding, DNA-binding, restri | 99.92 | |
| 3bor_A | 237 | Human initiation factor 4A-II; translation initiat | 99.91 | |
| 1qde_A | 224 | EIF4A, translation initiation factor 4A; DEAD box | 99.91 | |
| 2pl3_A | 236 | Probable ATP-dependent RNA helicase DDX10; DEAD, s | 99.91 | |
| 3ber_A | 249 | Probable ATP-dependent RNA helicase DDX47; DEAD, A | 99.91 | |
| 1q0u_A | 219 | Bstdead; DEAD protein, RNA binding protein; 1.85A | 99.91 | |
| 2oxc_A | 230 | Probable ATP-dependent RNA helicase DDX20; DEAD, s | 99.9 | |
| 1vec_A | 206 | ATP-dependent RNA helicase P54; DEAD-box protein, | 99.9 | |
| 1t6n_A | 220 | Probable ATP-dependent RNA helicase; RECA-like fol | 99.89 | |
| 2gxq_A | 207 | Heat resistant RNA dependent ATPase; RNA helicase, | 99.89 | |
| 3ly5_A | 262 | ATP-dependent RNA helicase DDX18; alpha-beta, stru | 99.88 | |
| 2ipc_A | 997 | Preprotein translocase SECA subunit; nucleotide bi | 99.87 | |
| 1z5z_A | 271 | Helicase of the SNF2/RAD54 family; hydrolase, reco | 99.79 | |
| 2vl7_A | 540 | XPD; helicase, unknown function; 2.25A {Sulfolobus | 99.67 | |
| 4a15_A | 620 | XPD helicase, ATP-dependent DNA helicase TA0057; h | 99.63 | |
| 3crv_A | 551 | XPD/RAD3 related DNA helicase; XPD helicase DNA re | 99.59 | |
| 1rif_A | 282 | DAR protein, DNA helicase UVSW; bacteriophage, REC | 99.47 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 99.39 | |
| 2fz4_A | 237 | DNA repair protein RAD25; RECA-like domain, DNA da | 99.33 | |
| 3b6e_A | 216 | Interferon-induced helicase C domain-containing P; | 99.32 | |
| 1w36_D | 608 | RECD, exodeoxyribonuclease V alpha chain; recombin | 97.92 | |
| 3hgt_A | 328 | HDA1 complex subunit 3; RECA-like domain, SWI2/SNF | 97.28 | |
| 4b3f_X | 646 | DNA-binding protein smubp-2; hydrolase, helicase; | 97.1 | |
| 2gk6_A | 624 | Regulator of nonsense transcripts 1; UPF1, helicas | 97.06 | |
| 2xzl_A | 802 | ATP-dependent helicase NAM7; hydrolase-RNA complex | 96.93 | |
| 2wjy_A | 800 | Regulator of nonsense transcripts 1; nonsense medi | 96.75 | |
| 3lfu_A | 647 | DNA helicase II; SF1 helicase, ATP-binding, DNA da | 96.64 | |
| 3e1s_A | 574 | Exodeoxyribonuclease V, subunit RECD; alpha and be | 96.6 | |
| 3upu_A | 459 | ATP-dependent DNA helicase DDA; RECA-like domain, | 96.52 | |
| 1uaa_A | 673 | REP helicase, protein (ATP-dependent DNA helicase | 95.96 | |
| 1pjr_A | 724 | PCRA; DNA repair, DNA replication, SOS response, h | 95.94 | |
| 3u4q_A | 1232 | ATP-dependent helicase/nuclease subunit A; helicas | 95.47 | |
| 1gm5_A | 780 | RECG; helicase, replication restart; HET: DNA ADP; | 95.19 | |
| 3oiy_A | 414 | Reverse gyrase helicase domain; topoisomerase, DNA | 94.51 | |
| 2o0j_A | 385 | Terminase, DNA packaging protein GP17; nucleotide- | 94.3 | |
| 3cpe_A | 592 | Terminase, DNA packaging protein GP17; large termi | 94.05 | |
| 1t6n_A | 220 | Probable ATP-dependent RNA helicase; RECA-like fol | 93.25 | |
| 4ddu_A | 1104 | Reverse gyrase; topoisomerase, DNA supercoiling, a | 92.26 | |
| 2eyq_A | 1151 | TRCF, transcription-repair coupling factor; MFD, S | 92.26 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 92.05 | |
| 3fe2_A | 242 | Probable ATP-dependent RNA helicase DDX5; DEAD, AD | 91.15 | |
| 1oyw_A | 523 | RECQ helicase, ATP-dependent DNA helicase; winged | 90.97 | |
| 2v1x_A | 591 | ATP-dependent DNA helicase Q1; DNA strand annealin | 90.42 | |
| 3ber_A | 249 | Probable ATP-dependent RNA helicase DDX47; DEAD, A | 89.61 | |
| 3vkw_A | 446 | Replicase large subunit; alpha/beta domain, helica | 89.36 | |
| 2gxq_A | 207 | Heat resistant RNA dependent ATPase; RNA helicase, | 88.92 | |
| 3co5_A | 143 | Putative two-component system transcriptional RES | 88.81 | |
| 3iuy_A | 228 | Probable ATP-dependent RNA helicase DDX53; REC-A-l | 88.72 | |
| 1xti_A | 391 | Probable ATP-dependent RNA helicase P47; alpha-bet | 88.31 | |
| 3bor_A | 237 | Human initiation factor 4A-II; translation initiat | 88.3 | |
| 1vec_A | 206 | ATP-dependent RNA helicase P54; DEAD-box protein, | 87.89 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 87.78 | |
| 1wrb_A | 253 | DJVLGB; RNA helicase, DEAD BOX, VASA, structural g | 87.42 | |
| 3ly5_A | 262 | ATP-dependent RNA helicase DDX18; alpha-beta, stru | 87.0 | |
| 2pl3_A | 236 | Probable ATP-dependent RNA helicase DDX10; DEAD, s | 85.07 | |
| 1qde_A | 224 | EIF4A, translation initiation factor 4A; DEAD box | 84.62 | |
| 2oxc_A | 230 | Probable ATP-dependent RNA helicase DDX20; DEAD, s | 84.37 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 83.45 | |
| 1e9r_A | 437 | Conjugal transfer protein TRWB; coupling protein, | 82.65 | |
| 1wp9_A | 494 | ATP-dependent RNA helicase, putative; ATPase, DNA | 82.28 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 82.03 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 81.86 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 81.06 | |
| 3hws_A | 363 | ATP-dependent CLP protease ATP-binding subunit CL; | 80.8 | |
| 3dmn_A | 174 | Putative DNA helicase; APC89291.2, lactobacillus p | 80.67 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 80.39 |
| >2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-59 Score=469.05 Aligned_cols=328 Identities=38% Similarity=0.678 Sum_probs=294.5
Q ss_pred CCeeccc-CCCccccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcC
Q psy9620 101 QMTLKGN-APNPITEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQS 179 (453)
Q Consensus 101 ~~~~~~~-~p~p~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~ 179 (453)
.+.+.+. .|.|+.+|++++|++.++++++++||..|||+|+++||.+++++|++++||||||||++|++|++.++....
T Consensus 43 ~~~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~ 122 (434)
T 2db3_A 43 PVKVTGSDVPQPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDP 122 (434)
T ss_dssp CEEEESSSCCCCCCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSC
T ss_pred eeEecCCCCCCCcCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcc
Confidence 4556666 889999999999999999999999999999999999999999999999999999999999999999988765
Q ss_pred CCCCCCCcEEEEEcCCHHHHHHHHHHHHHhcCCCCceEEEEeCCccCCCC------------------------------
Q psy9620 180 QLKPGDGPIVLVLAPTRELAQQIQEVARDFGSSTYLRSTCVYGGASKGPQ------------------------------ 229 (453)
Q Consensus 180 ~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~------------------------------ 229 (453)
......++++|||+||++||.|+++.+++++...++++.+++|+.....+
T Consensus 123 ~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~ 202 (434)
T 2db3_A 123 HELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFE 202 (434)
T ss_dssp CCCCTTCCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSCCCT
T ss_pred cccccCCccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCCcccc
Confidence 43344678999999999999999999999998888999999988653211
Q ss_pred --------------------------------CCceEEEEeccCcHHHHHHHHHhhccceEEEecccccccCccceeEEE
Q psy9620 230 --------------------------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVE 277 (453)
Q Consensus 230 --------------------------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 277 (453)
+.+|+++||||+|.++..++..++.++..+.+.... .....+.+.+.
T Consensus 203 ~~~~lVlDEah~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~-~~~~~i~~~~~ 281 (434)
T 2db3_A 203 DTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVG-GACSDVKQTIY 281 (434)
T ss_dssp TCCEEEEETHHHHTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTT-CCCTTEEEEEE
T ss_pred cCCeEEEccHhhhhccCcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhccCCEEEEecccc-ccccccceEEE
Confidence 468999999999999999999999999888776654 34466778888
Q ss_pred EccccchhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEe
Q psy9620 278 VCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVAT 357 (453)
Q Consensus 278 ~~~~~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT 357 (453)
.+....|...|.+++... ..++||||++++.|+.+++.|...++.+..+||++++.+|..++++|++|+.+|||||
T Consensus 282 ~~~~~~k~~~l~~~l~~~----~~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT 357 (434)
T 2db3_A 282 EVNKYAKRSKLIEILSEQ----ADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIAT 357 (434)
T ss_dssp ECCGGGHHHHHHHHHHHC----CTTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEEC
T ss_pred EeCcHHHHHHHHHHHHhC----CCCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEc
Confidence 888778888888777653 3459999999999999999999999999999999999999999999999999999999
Q ss_pred ccCccCCCCCCCcEEEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcC-CChHHHHHHHHHHHhcCCCCChHHHHH
Q psy9620 358 DVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQ-QNSRQAKDLIDVLTESNHPVDPKLSAL 433 (453)
Q Consensus 358 ~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~-~~~~~~~~l~~~l~~~~~~v~~~l~~~ 433 (453)
+++++|||+|+|++||+||+|.+.++|+||+||+||.|+.|.|++|+++ ++...++++.++|++++++||++|.+|
T Consensus 358 ~v~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~~~~~~~~~~l~~~l~~~~~~vp~~l~~~ 434 (434)
T 2db3_A 358 SVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVKILEGSGQTVPDFLRTC 434 (434)
T ss_dssp GGGTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECTTTCGGGHHHHHHHHHHTTCCCCGGGC--
T ss_pred hhhhCCCCcccCCEEEEECCCCCHHHHHHHhcccccCCCCCEEEEEEeccccHHHHHHHHHHHHHcCCCCCHHHHhC
Confidence 9999999999999999999999999999999999999999999999994 578899999999999999999999764
|
| >2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-53 Score=423.58 Aligned_cols=332 Identities=42% Similarity=0.694 Sum_probs=290.1
Q ss_pred eeccc-CCCccccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCC
Q psy9620 103 TLKGN-APNPITEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQL 181 (453)
Q Consensus 103 ~~~~~-~p~p~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~ 181 (453)
...+. .|.|+.+|+++++++.+++++.++||..|+|+|.++|+.+++++|++++||||+|||++|++|++..+......
T Consensus 4 ~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~ 83 (417)
T 2i4i_A 4 EATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPG 83 (417)
T ss_dssp EEESTTCCCCCSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCC
T ss_pred ccCCCcCCcccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhcccc
Confidence 34455 88999999999999999999999999999999999999999999999999999999999999999887654321
Q ss_pred -------------CCCCCcEEEEEcCCHHHHHHHHHHHHHhcCCCCceEEEEeCCccCCC---------C----------
Q psy9620 182 -------------KPGDGPIVLVLAPTRELAQQIQEVARDFGSSTYLRSTCVYGGASKGP---------Q---------- 229 (453)
Q Consensus 182 -------------~~~~~~~vlil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~---------~---------- 229 (453)
....++++|||+||++|+.|+++.+++++...++++..++|+..... .
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~ 163 (417)
T 2i4i_A 84 EALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLV 163 (417)
T ss_dssp HHHHHHHHCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHH
T ss_pred chhhccccccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHH
Confidence 12235789999999999999999999998888889888888764311 1
Q ss_pred ---------------------------------------------CCceEEEEeccCcHHHHHHHHHhhccceEEEeccc
Q psy9620 230 ---------------------------------------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSL 264 (453)
Q Consensus 230 ---------------------------------------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~ 264 (453)
...|++++|||++..+..++..++.++..+.+...
T Consensus 164 ~~l~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~ 243 (417)
T 2i4i_A 164 DMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRV 243 (417)
T ss_dssp HHHHTTSBCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC--
T ss_pred HHHHcCCcChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeCCC
Confidence 25789999999999999999999988877766554
Q ss_pred ccccCccceeEEEEccccchhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHH
Q psy9620 265 TLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLK 344 (453)
Q Consensus 265 ~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~ 344 (453)
. .....+.+.+..+...++...+.+++... ....++||||++++.++.+++.|...++.+..+|+++++.+|..+++
T Consensus 244 ~-~~~~~i~~~~~~~~~~~~~~~l~~~l~~~--~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~ 320 (417)
T 2i4i_A 244 G-STSENITQKVVWVEESDKRSFLLDLLNAT--GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALH 320 (417)
T ss_dssp ---CCSSEEEEEEECCGGGHHHHHHHHHHTC--CTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHH
T ss_pred C-CCccCceEEEEEeccHhHHHHHHHHHHhc--CCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHH
Confidence 3 34456777777777777777777777654 24668999999999999999999999999999999999999999999
Q ss_pred HHhcCCCcEEEEeccCccCCCCCCCcEEEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcCCChHHHHHHHHHHHhcCC
Q psy9620 345 EFRNGRAGILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDLIDVLTESNH 424 (453)
Q Consensus 345 ~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~ 424 (453)
.|++|+.+|||||+++++|||+|++++||+||+|.+..+|+||+||+||.|+.|.|++|+++.+...++++++.++...+
T Consensus 321 ~f~~g~~~vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~ 400 (417)
T 2i4i_A 321 QFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQ 400 (417)
T ss_dssp HHHHTSSCEEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEEECGGGGGGHHHHHHHHHHTTC
T ss_pred HHHcCCCCEEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceEEEEEccccHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHhhc
Q psy9620 425 PVDPKLSALASRS 437 (453)
Q Consensus 425 ~v~~~l~~~~~~~ 437 (453)
++|++|.+++...
T Consensus 401 ~~~~~l~~~~~~~ 413 (417)
T 2i4i_A 401 EVPSWLENMAYEH 413 (417)
T ss_dssp CCCHHHHHHHTCS
T ss_pred cCCHHHHHHHHhh
Confidence 9999999998653
|
| >2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-50 Score=397.42 Aligned_cols=313 Identities=32% Similarity=0.541 Sum_probs=271.2
Q ss_pred CCCccccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCc
Q psy9620 108 APNPITEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGP 187 (453)
Q Consensus 108 ~p~p~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~ 187 (453)
.+.+..+|++++|++.+++.++++||..|+|+|.++++.+++++|+++++|||+|||++|++|++..+... ..++
T Consensus 32 ~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~-----~~~~ 106 (410)
T 2j0s_A 32 EVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQ-----VRET 106 (410)
T ss_dssp TCCCCCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTT-----SCSC
T ss_pred CccCCCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhc-----cCCc
Confidence 34566789999999999999999999999999999999999999999999999999999999999876432 2466
Q ss_pred EEEEEcCCHHHHHHHHHHHHHhcCCCCceEEEEeCCccCCCC--------------------------------------
Q psy9620 188 IVLVLAPTRELAQQIQEVARDFGSSTYLRSTCVYGGASKGPQ-------------------------------------- 229 (453)
Q Consensus 188 ~vlil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~-------------------------------------- 229 (453)
++||++||++|+.|+.+.+.+++...++++..++|+.....+
T Consensus 107 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViD 186 (410)
T 2j0s_A 107 QALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLD 186 (410)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEE
T ss_pred eEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhheeEEEEc
Confidence 899999999999999999999998888888888877542111
Q ss_pred ----------------------CCceEEEEeccCcHHHHHHHHHhhccceEEEecccccccCccceeEEEEccccc-hhh
Q psy9620 230 ----------------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHE-KEN 286 (453)
Q Consensus 230 ----------------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-k~~ 286 (453)
...|++++|||++.++.++...++.++..+.+..... ....+.+.+..+.... +..
T Consensus 187 Eah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~k~~ 265 (410)
T 2j0s_A 187 EADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDEL-TLEGIKQFFVAVEREEWKFD 265 (410)
T ss_dssp THHHHTSTTTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGGGC-SCTTEEEEEEEESSTTHHHH
T ss_pred cHHHHHhhhhHHHHHHHHHhCccCceEEEEEcCCCHHHHHHHHHHcCCCEEEEecCccc-cCCCceEEEEEeCcHHhHHH
Confidence 4689999999999998888888888887776655442 3345566555554433 666
Q ss_pred hHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCC
Q psy9620 287 KLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDV 366 (453)
Q Consensus 287 ~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDi 366 (453)
.+..++... ...++||||++++.++.+++.|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|||+
T Consensus 266 ~l~~~~~~~---~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi 342 (410)
T 2j0s_A 266 TLCDLYDTL---TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDV 342 (410)
T ss_dssp HHHHHHHHH---TSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCC
T ss_pred HHHHHHHhc---CCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCc
Confidence 666666654 35699999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcCCChHHHHHHHHHHHhcCCCCChH
Q psy9620 367 DDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDLIDVLTESNHPVDPK 429 (453)
Q Consensus 367 p~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~v~~~ 429 (453)
|++++||+||+|.+...|+||+||+||.|++|.|++|+++.+...++++.++++...+++|..
T Consensus 343 ~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 405 (410)
T 2j0s_A 343 PQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMN 405 (410)
T ss_dssp TTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHHHHHHHHHTTCCCEECCSC
T ss_pred ccCCEEEEECCCCCHHHHHHhcccccCCCCceEEEEEecHHHHHHHHHHHHHhCCCceecccc
Confidence 999999999999999999999999999999999999999999999999988888776666643
|
| >3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-49 Score=391.88 Aligned_cols=317 Identities=32% Similarity=0.533 Sum_probs=257.2
Q ss_pred CCCccccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCc
Q psy9620 108 APNPITEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGP 187 (453)
Q Consensus 108 ~p~p~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~ 187 (453)
.+....+|+++++++.+++.+++.||..|+++|.++++.+++++|+++++|||+|||++|++|++..+.... .++
T Consensus 35 ~~~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~-----~~~ 109 (414)
T 3eiq_A 35 WNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDL-----KAT 109 (414)
T ss_dssp CCCCCCCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTS-----CSC
T ss_pred ccchhcCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhcC-----Cce
Confidence 456678899999999999999999999999999999999999999999999999999999999998875432 366
Q ss_pred EEEEEcCCHHHHHHHHHHHHHhcCCCCceEEEEeCCccCCC----------C----------------------------
Q psy9620 188 IVLVLAPTRELAQQIQEVARDFGSSTYLRSTCVYGGASKGP----------Q---------------------------- 229 (453)
Q Consensus 188 ~vlil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~----------~---------------------------- 229 (453)
++||++||++|+.|+.+.+++++...++.+..++++..... .
T Consensus 110 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vVi 189 (414)
T 3eiq_A 110 QALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVL 189 (414)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEE
T ss_pred eEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEEEE
Confidence 79999999999999999999998777788777777654211 1
Q ss_pred -----------------------CCceEEEEeccCcHHHHHHHHHhhccceEEEecccccccCccceeEEEEccc-cchh
Q psy9620 230 -----------------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAE-HEKE 285 (453)
Q Consensus 230 -----------------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~k~ 285 (453)
...|++++|||++.++..+...++.++..+.+...... ...+.+.+..... ..+.
T Consensus 190 DEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 268 (414)
T 3eiq_A 190 DEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELT-LEGIRQFYINVEREEWKL 268 (414)
T ss_dssp CSHHHHHHTTTHHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCC-TTSCCEEEEECSSSTTHH
T ss_pred ECHHHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCccC-CCCceEEEEEeChHHhHH
Confidence 67899999999999999999999988887766554433 3344444444433 3355
Q ss_pred hhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCC
Q psy9620 286 NKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLD 365 (453)
Q Consensus 286 ~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiD 365 (453)
..+..++.. ....++||||++++.++.+++.|...++.+..+|++|++.+|..+++.|++|+.+|||||+++++|||
T Consensus 269 ~~l~~~~~~---~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gid 345 (414)
T 3eiq_A 269 DTLCDLYET---LTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGID 345 (414)
T ss_dssp HHHHHHHHS---SCCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CC
T ss_pred HHHHHHHHh---CCCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCC
Confidence 555555554 34569999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcCCChHHHHHHHHHHHhcCCCCChHHHHH
Q psy9620 366 VDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDLIDVLTESNHPVDPKLSAL 433 (453)
Q Consensus 366 ip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~v~~~l~~~ 433 (453)
+|++++||++|+|.+..+|+||+||+||.|++|.|++|+++.+...++.+.++++...+++|..+.++
T Consensus 346 ip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 413 (414)
T 3eiq_A 346 VQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMPLNVADL 413 (414)
T ss_dssp GGGCSCEEESSCCSSTHHHHHHSCCC-------CEEEEECSTHHHHHHHHHHHTTCCCEECCC-----
T ss_pred ccCCCEEEEeCCCCCHHHhhhhcCcccCCCCCceEEEEEcHHHHHHHHHHHHHHcCCccccChhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999888765
|
| >1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-48 Score=382.33 Aligned_cols=312 Identities=29% Similarity=0.515 Sum_probs=269.9
Q ss_pred CccccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEE
Q psy9620 110 NPITEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIV 189 (453)
Q Consensus 110 ~p~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~v 189 (453)
.+..+|++++|++.+.+.+.++||..|+|+|.++++.+++++++++++|||+|||++|++|++..+.... .++++
T Consensus 18 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~-----~~~~~ 92 (400)
T 1s2m_A 18 TKGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKL-----NKIQA 92 (400)
T ss_dssp ---CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTTS-----CSCCE
T ss_pred cccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhcc-----CCccE
Confidence 3456899999999999999999999999999999999999999999999999999999999998775431 35679
Q ss_pred EEEcCCHHHHHHHHHHHHHhcCCCCceEEEEeCCccCCC---------C-------------------------------
Q psy9620 190 LVLAPTRELAQQIQEVARDFGSSTYLRSTCVYGGASKGP---------Q------------------------------- 229 (453)
Q Consensus 190 lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~---------~------------------------------- 229 (453)
||++||++|+.|+.+.+++++...++++..++|+..... .
T Consensus 93 lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEa 172 (400)
T 1s2m_A 93 LIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEA 172 (400)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESH
T ss_pred EEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCc
Confidence 999999999999999999998888888888887754210 0
Q ss_pred --------------------CCceEEEEeccCcHHHHHHHHHhhccceEEEecccccccCccceeEEEEccccchhhhHH
Q psy9620 230 --------------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLF 289 (453)
Q Consensus 230 --------------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~ 289 (453)
...|++++|||++..+......++.++..+..... .....+.+.+.......+...+.
T Consensus 173 H~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~k~~~l~ 250 (400)
T 1s2m_A 173 DKMLSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLMEE--LTLKGITQYYAFVEERQKLHCLN 250 (400)
T ss_dssp HHHSSHHHHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCSS--CBCTTEEEEEEECCGGGHHHHHH
T ss_pred hHhhhhchHHHHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCeEEEeccc--cccCCceeEEEEechhhHHHHHH
Confidence 46799999999999999888888887766544322 23355666676666666766666
Q ss_pred HHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCC
Q psy9620 290 GLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDV 369 (453)
Q Consensus 290 ~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v 369 (453)
.++... ...++||||++++.++.+++.|...++.+..+|++|++.+|..+++.|++|+.+|||||+++++|+|+|++
T Consensus 251 ~~~~~~---~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~ 327 (400)
T 1s2m_A 251 TLFSKL---QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAV 327 (400)
T ss_dssp HHHHHS---CCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTE
T ss_pred HHHhhc---CCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCC
Confidence 666653 45699999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcCCChHHHHHHHHHHHhcCCCCChHHH
Q psy9620 370 KFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDLIDVLTESNHPVDPKLS 431 (453)
Q Consensus 370 ~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~v~~~l~ 431 (453)
++||++|+|.+..+|+||+||+||.|++|.|++|+++.+...++++.+.+....+++|..+.
T Consensus 328 ~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 389 (400)
T 1s2m_A 328 NVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTEIAAIPATID 389 (400)
T ss_dssp EEEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHHHHHHHHHHHTCCCEECCSSCC
T ss_pred CEEEEeCCCCCHHHHHHhcchhcCCCCCceEEEEeccchHHHHHHHHHHhCCCccccccccc
Confidence 99999999999999999999999999999999999999999999988888777777766544
|
| >3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-48 Score=399.20 Aligned_cols=300 Identities=27% Similarity=0.420 Sum_probs=243.3
Q ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHh--cCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHH
Q psy9620 120 FPDYVLKEVKRQGFDRPTPIQAQGWPIAM--SGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRE 197 (453)
Q Consensus 120 l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~--~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~ 197 (453)
|++.+++.+.++||..|+|+|.++|+.++ .++|+|++||||||||++|++|++..+...... ...++++|||+||++
T Consensus 79 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~-~~~~~~~lil~Ptr~ 157 (563)
T 3i5x_A 79 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFD-SQYMVKAVIVAPTRD 157 (563)
T ss_dssp SCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTS-STTSCCEEEECSSHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhcccc-ccCCeeEEEEcCcHH
Confidence 99999999999999999999999999999 678999999999999999999999998765432 234678999999999
Q ss_pred HHHHHHHHHHHhcC----CCCceEEEEeCCccCCC----------C----------------------------------
Q psy9620 198 LAQQIQEVARDFGS----STYLRSTCVYGGASKGP----------Q---------------------------------- 229 (453)
Q Consensus 198 La~q~~~~~~~~~~----~~~~~~~~~~gg~~~~~----------~---------------------------------- 229 (453)
||.|+++.++++.. ...+.+..++++..... +
T Consensus 158 La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~ 237 (563)
T 3i5x_A 158 LALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADR 237 (563)
T ss_dssp HHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHH
T ss_pred HHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEeCHHH
Confidence 99999999998642 12345666666654211 1
Q ss_pred -------------------------CCceEEEEeccCcHHHHHHHHHhhccceEEEeccccc---ccCccceeEEEEccc
Q psy9620 230 -------------------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTL---SANHNIQQVVEVCAE 281 (453)
Q Consensus 230 -------------------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~ 281 (453)
...|++++|||++..+..++..++.++..+.+..... .....+.+.+.....
T Consensus 238 l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (563)
T 3i5x_A 238 LLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEK 317 (563)
T ss_dssp HTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESS
T ss_pred HhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceEEEECch
Confidence 2679999999999999999999888776655433221 222334444444332
Q ss_pred c-chhhh-HHHHHHhhhc-CCCCcEEEEEcchhHHHHHHHHHHhc---CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEE
Q psy9620 282 H-EKENK-LFGLLNDISS-KDENKTIIFAETKRKVDKITKSIQNY---GWAAVGIHGDKSQQERDYVLKEFRNGRAGILV 355 (453)
Q Consensus 282 ~-~k~~~-l~~ll~~~~~-~~~~~~lVF~~s~~~~~~l~~~L~~~---~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLv 355 (453)
. .+... +..+...+.. ....++||||+++..|+.++..|... ++.+..+|++|++.+|..+++.|++|+.+|||
T Consensus 318 ~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLv 397 (563)
T 3i5x_A 318 FANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILV 397 (563)
T ss_dssp TTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEE
T ss_pred hHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCCEEE
Confidence 1 22222 2222222222 34679999999999999999999986 89999999999999999999999999999999
Q ss_pred EeccCccCCCCCCCcEEEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcCCChHHHHHHHHHHH
Q psy9620 356 ATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDLIDVLT 420 (453)
Q Consensus 356 aT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~l~ 420 (453)
||+++++|||+|+|++||+||+|.+..+|+||+|||||.|+.|.|++|+++.+...++.+.+...
T Consensus 398 aT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~ 462 (563)
T 3i5x_A 398 CTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKN 462 (563)
T ss_dssp ECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHC
T ss_pred EcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceEEEEEchhHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999888888776643
|
| >1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-47 Score=378.61 Aligned_cols=309 Identities=27% Similarity=0.476 Sum_probs=267.1
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEE
Q psy9620 113 TEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVL 192 (453)
Q Consensus 113 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil 192 (453)
.+|+++++++.+++.|+++||..|+|+|.++++.+++++++++++|||+|||++|++|++..+... ..++++||+
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~-----~~~~~~lil 82 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV-----TGQVSVLVM 82 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCC-----TTCCCEEEE
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhccc-----CCCeeEEEE
Confidence 579999999999999999999999999999999999999999999999999999999999876442 235679999
Q ss_pred cCCHHHHHHHHHHHHHhcCCC-CceEEEEeCCccCCC----------C--------------------------------
Q psy9620 193 APTRELAQQIQEVARDFGSST-YLRSTCVYGGASKGP----------Q-------------------------------- 229 (453)
Q Consensus 193 ~Ptr~La~q~~~~~~~~~~~~-~~~~~~~~gg~~~~~----------~-------------------------------- 229 (453)
+||++|+.|+.+.+.++.... ++++..++|+..... .
T Consensus 83 ~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH 162 (391)
T 1xti_A 83 CHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECD 162 (391)
T ss_dssp CSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHH
T ss_pred CCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHH
Confidence 999999999999999997665 688888887754210 1
Q ss_pred --------------------CCceEEEEeccCcHHHHHHHHHhhccceEEEecccccccCccceeEEEEccccchhhhHH
Q psy9620 230 --------------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLF 289 (453)
Q Consensus 230 --------------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~ 289 (453)
...|++++|||++..+..++..++.++..+.+..........+.+.+.......+...+.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 242 (391)
T 1xti_A 163 KMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLF 242 (391)
T ss_dssp HHTSSHHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTTCEEEEEECCGGGHHHHHH
T ss_pred HHhhccchHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCccccCcccceEEEEEcCchhHHHHHH
Confidence 468999999999999999999999888877766544444456677777777777777777
Q ss_pred HHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCC
Q psy9620 290 GLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDV 369 (453)
Q Consensus 290 ~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v 369 (453)
.++... ...++||||+++..++.+++.|...++.+..+|+++++.+|..+++.|++|+.+|||||+++++|+|+|++
T Consensus 243 ~~l~~~---~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~ 319 (391)
T 1xti_A 243 DLLDVL---EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERV 319 (391)
T ss_dssp HHHHHS---CCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTE
T ss_pred HHHHhc---CCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccC
Confidence 777654 56799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcCCC-hHHHHHHHHHHHhcCCCCChH
Q psy9620 370 KFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQN-SRQAKDLIDVLTESNHPVDPK 429 (453)
Q Consensus 370 ~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~-~~~~~~l~~~l~~~~~~v~~~ 429 (453)
++||++++|.+..+|+||+||+||.|++|.|++|+++.+ ...++.+.+.+....+++|..
T Consensus 320 ~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (391)
T 1xti_A 320 NIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDE 380 (391)
T ss_dssp EEEEESSCCSSHHHHHHHHCBCSSSCCCCEEEEEECSHHHHHHHHHHHHHTTCCCEECCSC
T ss_pred CEEEEeCCCCCHHHHHHhcccccCCCCceEEEEEEcccchHHHHHHHHHHhcCChhhCCcc
Confidence 999999999999999999999999999999999999764 455666766666666666654
|
| >3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-47 Score=377.84 Aligned_cols=310 Identities=28% Similarity=0.472 Sum_probs=260.0
Q ss_pred CCccccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcC--CcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCC
Q psy9620 109 PNPITEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSG--SNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDG 186 (453)
Q Consensus 109 p~p~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g--~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~ 186 (453)
+.++.+|+++++++.+++.+.++||..|+|+|.++++.++++ +++++++|||+|||++|++|++..+.... .+
T Consensus 21 ~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~-----~~ 95 (412)
T 3fht_A 21 LYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPAN-----KY 95 (412)
T ss_dssp TCCSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTS-----CS
T ss_pred ccccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcC-----CC
Confidence 346788999999999999999999999999999999999987 99999999999999999999998875432 46
Q ss_pred cEEEEEcCCHHHHHHHHHHHHHhcCCC-CceEEEEeCCccCCCC------------------------------------
Q psy9620 187 PIVLVLAPTRELAQQIQEVARDFGSST-YLRSTCVYGGASKGPQ------------------------------------ 229 (453)
Q Consensus 187 ~~vlil~Ptr~La~q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~------------------------------------ 229 (453)
+++||++||++|+.|+.+.++++.... ++.+....++......
T Consensus 96 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViD 175 (412)
T 3fht_A 96 PQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLD 175 (412)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTTCCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEE
T ss_pred CCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhhhcCCCCEEEECchHHHHHHHhcCCcChhhCcEEEEe
Confidence 689999999999999999999987653 5666666655432211
Q ss_pred -----------------------CCceEEEEeccCcHHHHHHHHHhhccceEEEecccccccCccceeEEEEccc-cchh
Q psy9620 230 -----------------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAE-HEKE 285 (453)
Q Consensus 230 -----------------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~k~ 285 (453)
...|++++|||++..+..++..++.++..+.+.... .....+.+.+..... ..+.
T Consensus 176 Eah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 254 (412)
T 3fht_A 176 EADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREE-ETLDTIKQYYVLCSSRDEKF 254 (412)
T ss_dssp THHHHHSTTTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGG-SSCTTEEEEEEECSSHHHHH
T ss_pred CHHHHhhcCCcHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCCCeEEeecccc-ccccCceEEEEEcCChHHHH
Confidence 567999999999999999999999888777665544 233445555544433 3455
Q ss_pred hhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCC
Q psy9620 286 NKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLD 365 (453)
Q Consensus 286 ~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiD 365 (453)
..+..++... ...++||||+++..|+.+++.|...++.+..+|++|++.+|..+++.|++|+.+|||||+++++|||
T Consensus 255 ~~l~~~~~~~---~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gid 331 (412)
T 3fht_A 255 QALCNLYGAI---TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGID 331 (412)
T ss_dssp HHHHHHHHHH---SSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCC
T ss_pred HHHHHHHhhc---CCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCCC
Confidence 5555555543 4569999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEcCCC------CChhHHHHhhhcccCCCCcceEEEEEcCCC-hHHHHHHHHHHHhcCCCCC
Q psy9620 366 VDDVKFVINFDYP------NNSEDYIHRIGRTGRSDNTGTSYTFFTQQN-SRQAKDLIDVLTESNHPVD 427 (453)
Q Consensus 366 ip~v~~VI~~d~p------~s~~~y~qr~GRagR~g~~g~~~~~~~~~~-~~~~~~l~~~l~~~~~~v~ 427 (453)
+|++++||+||+| .+..+|+||+||+||.|+.|.|++|+++.+ ...++.+.+.++...++++
T Consensus 332 ip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 400 (412)
T 3fht_A 332 VEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLD 400 (412)
T ss_dssp CTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHHTCCCEEC-
T ss_pred ccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCceEEEEEcChhhHHHHHHHHHHHCCccccCC
Confidence 9999999999999 577999999999999999999999998765 6777777777776655554
|
| >3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-46 Score=370.72 Aligned_cols=301 Identities=30% Similarity=0.518 Sum_probs=251.9
Q ss_pred ccccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcC--CcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcE
Q psy9620 111 PITEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSG--SNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPI 188 (453)
Q Consensus 111 p~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g--~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~ 188 (453)
...+|++++|++.+++.+.+.||..|+|+|.++++.++++ +++++++|||+|||++|++|++..+.... .+++
T Consensus 3 ~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~-----~~~~ 77 (395)
T 3pey_A 3 MAKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPED-----ASPQ 77 (395)
T ss_dssp -CCSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTC-----CSCC
T ss_pred cccCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCC-----CCcc
Confidence 3578999999999999999999999999999999999987 99999999999999999999998875432 4668
Q ss_pred EEEEcCCHHHHHHHHHHHHHhcCCCCceEEEEeCCccCCCC---------------------------------------
Q psy9620 189 VLVLAPTRELAQQIQEVARDFGSSTYLRSTCVYGGASKGPQ--------------------------------------- 229 (453)
Q Consensus 189 vlil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~--------------------------------------- 229 (453)
+||++||++|+.|+.+.+++++...++.+...+++......
T Consensus 78 ~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~ 157 (395)
T 3pey_A 78 AICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKNKQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNM 157 (395)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTTSCBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEETHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhhccCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEChhhh
Confidence 99999999999999999999988788888777766433221
Q ss_pred ------------------CCceEEEEeccCcHHHHHHHHHhhccceEEEecccccccCccceeEEEEcc-ccchhhhHHH
Q psy9620 230 ------------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCA-EHEKENKLFG 290 (453)
Q Consensus 230 ------------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~k~~~l~~ 290 (453)
...|++++|||+++.+..+...++.++..+........ ...+.+.+.... ...+...+..
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~ 236 (395)
T 3pey_A 158 LDQQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVN-VDAIKQLYMDCKNEADKFDVLTE 236 (395)
T ss_dssp HHSTTHHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGCS-CTTEEEEEEECSSHHHHHHHHHH
T ss_pred cCccccHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEccccccc-cccccEEEEEcCchHHHHHHHHH
Confidence 56899999999999999999999888777665554422 334444444443 3334444444
Q ss_pred HHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCc
Q psy9620 291 LLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVK 370 (453)
Q Consensus 291 ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~ 370 (453)
++.. ....++||||+++..|+.+++.|...++.+..+|++|++.+|..+++.|++|+.+|||||+++++|||+|+++
T Consensus 237 ~~~~---~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~ 313 (395)
T 3pey_A 237 LYGL---MTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVS 313 (395)
T ss_dssp HHTT---TTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTTEE
T ss_pred HHHh---ccCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCcccCC
Confidence 4433 3457999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCC------ChhHHHHhhhcccCCCCcceEEEEEcCCCh-HHHHHHHHHHH
Q psy9620 371 FVINFDYPN------NSEDYIHRIGRTGRSDNTGTSYTFFTQQNS-RQAKDLIDVLT 420 (453)
Q Consensus 371 ~VI~~d~p~------s~~~y~qr~GRagR~g~~g~~~~~~~~~~~-~~~~~l~~~l~ 420 (453)
+||+||+|. +..+|+||+||+||.|++|.|++|+++.+. ...+.+.+.+.
T Consensus 314 ~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~ 370 (395)
T 3pey_A 314 MVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYFG 370 (395)
T ss_dssp EEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHTT
T ss_pred EEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEEEechHHHHHHHHHHHHhC
Confidence 999999998 999999999999999999999999987554 34444444443
|
| >1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-46 Score=363.33 Aligned_cols=300 Identities=34% Similarity=0.611 Sum_probs=259.7
Q ss_pred cccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcC-CcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEE
Q psy9620 112 ITEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSG-SNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVL 190 (453)
Q Consensus 112 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g-~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vl 190 (453)
..+|++++|++.+++.++++||..|+|+|.++++.++++ +++++++|||+|||++|++|++..+... .++++|
T Consensus 5 ~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~------~~~~~l 78 (367)
T 1hv8_A 5 YMNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNEN------NGIEAI 78 (367)
T ss_dssp CCCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSS------SSCCEE
T ss_pred cCchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhccc------CCCcEE
Confidence 357999999999999999999999999999999999988 7999999999999999999998876532 466799
Q ss_pred EEcCCHHHHHHHHHHHHHhcCCCCceEEEEeCCccCCC--------C---------------------------------
Q psy9620 191 VLAPTRELAQQIQEVARDFGSSTYLRSTCVYGGASKGP--------Q--------------------------------- 229 (453)
Q Consensus 191 il~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~--------~--------------------------------- 229 (453)
|++|+++|+.|+.+.+.++....++++..++++..... .
T Consensus 79 il~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~ 158 (367)
T 1hv8_A 79 ILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALKNANIVVGTPGRILDHINRGTLNLKNVKYFILDEADE 158 (367)
T ss_dssp EECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHHTCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHH
T ss_pred EEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcCCCCEEEecHHHHHHHHHcCCcccccCCEEEEeCchH
Confidence 99999999999999999998877888888877754211 0
Q ss_pred ------------------CCceEEEEeccCcHHHHHHHHHhhccceEEEecccccccCccceeEEEEccccchhhhHHHH
Q psy9620 230 ------------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGL 291 (453)
Q Consensus 230 ------------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~l 291 (453)
...+++++|||++.........++.++..+... ....+.+.+......++...+..+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~ 233 (367)
T 1hv8_A 159 MLNMGFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKAK-----INANIEQSYVEVNENERFEALCRL 233 (367)
T ss_dssp HHTTTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEECC-----SSSSSEEEEEECCGGGHHHHHHHH
T ss_pred hhhhchHHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcCCCeEEEec-----CCCCceEEEEEeChHHHHHHHHHH
Confidence 568999999999999988888888876654432 223556666666655665555555
Q ss_pred HHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcE
Q psy9620 292 LNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKF 371 (453)
Q Consensus 292 l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~ 371 (453)
+. ....++||||+++..++.+++.|...++.+..+|++++..+|..+++.|++|+.+|||||+++++|+|+|++++
T Consensus 234 l~----~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~ 309 (367)
T 1hv8_A 234 LK----NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNC 309 (367)
T ss_dssp HC----STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSE
T ss_pred Hh----cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCE
Confidence 43 45679999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcCCChHHHHHHHHHHHhcCCCC
Q psy9620 372 VINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDLIDVLTESNHPV 426 (453)
Q Consensus 372 VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~v 426 (453)
||++++|.+..+|+||+||+||.|++|.|++++++.+...++.+.+.++..-+++
T Consensus 310 Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 364 (367)
T 1hv8_A 310 VINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYIERAMKLKIKKL 364 (367)
T ss_dssp EEESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHHHHHHHHHHTCCCCCB
T ss_pred EEEecCCCCHHHhhhcccccccCCCccEEEEEEcHHHHHHHHHHHHHhCCCCcee
Confidence 9999999999999999999999999999999999999999988888776655443
|
| >3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-46 Score=386.33 Aligned_cols=299 Identities=27% Similarity=0.429 Sum_probs=243.9
Q ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHh--cCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHH
Q psy9620 120 FPDYVLKEVKRQGFDRPTPIQAQGWPIAM--SGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRE 197 (453)
Q Consensus 120 l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~--~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~ 197 (453)
|++.+++.++++||..|+|+|.++|+.++ .++|+|++||||+|||++|++|++..+..... ....++++|||+||++
T Consensus 28 l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~-~~~~~~~~lvl~Ptr~ 106 (579)
T 3sqw_A 28 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKF-DSQYMVKAVIVAPTRD 106 (579)
T ss_dssp SCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTT-SSTTSCCEEEECSSHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccc-cccCCCeEEEEcchHH
Confidence 99999999999999999999999999999 78999999999999999999999998876542 2234678999999999
Q ss_pred HHHHHHHHHHHhcC----CCCceEEEEeCCccCCC----------C----------------------------------
Q psy9620 198 LAQQIQEVARDFGS----STYLRSTCVYGGASKGP----------Q---------------------------------- 229 (453)
Q Consensus 198 La~q~~~~~~~~~~----~~~~~~~~~~gg~~~~~----------~---------------------------------- 229 (453)
|+.|+.+.+.++.. ...+.+..++++..... .
T Consensus 107 La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~ 186 (579)
T 3sqw_A 107 LALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADR 186 (579)
T ss_dssp HHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHH
T ss_pred HHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccccCCEEEEEChHH
Confidence 99999999998752 23355666666653211 1
Q ss_pred -------------------------CCceEEEEeccCcHHHHHHHHHhhccceEEEeccccc---ccCccceeEEEEccc
Q psy9620 230 -------------------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTL---SANHNIQQVVEVCAE 281 (453)
Q Consensus 230 -------------------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~ 281 (453)
..+|+++||||+++.+..++..++.++..+.+..... .....+.+.+.....
T Consensus 187 l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 266 (579)
T 3sqw_A 187 LLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEK 266 (579)
T ss_dssp HTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESS
T ss_pred hhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCccccccccccceEEEEecc
Confidence 2679999999999999999999988876655443221 222334444444432
Q ss_pred c-chh-hhHHHHHHhhhc-CCCCcEEEEEcchhHHHHHHHHHHhc---CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEE
Q psy9620 282 H-EKE-NKLFGLLNDISS-KDENKTIIFAETKRKVDKITKSIQNY---GWAAVGIHGDKSQQERDYVLKEFRNGRAGILV 355 (453)
Q Consensus 282 ~-~k~-~~l~~ll~~~~~-~~~~~~lVF~~s~~~~~~l~~~L~~~---~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLv 355 (453)
. .+. ..+..+...+.. ....++||||+++..|+.+++.|... ++.+..+||+|++.+|..+++.|++|+.+|||
T Consensus 267 ~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLV 346 (579)
T 3sqw_A 267 FANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILV 346 (579)
T ss_dssp TTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEE
T ss_pred hhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEE
Confidence 2 222 222223333322 34679999999999999999999987 89999999999999999999999999999999
Q ss_pred EeccCccCCCCCCCcEEEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcCCChHHHHHHHHHH
Q psy9620 356 ATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDLIDVL 419 (453)
Q Consensus 356 aT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~l 419 (453)
||+++++|||+|+|++||++|+|.+.+.|+||+|||||.|+.|.|++|+++.+...++.+.+..
T Consensus 347 aT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~ 410 (579)
T 3sqw_A 347 CTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAK 410 (579)
T ss_dssp ECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHH
T ss_pred EcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEEEEcccHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999988888877654
|
| >3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-48 Score=390.81 Aligned_cols=308 Identities=28% Similarity=0.470 Sum_probs=124.4
Q ss_pred ccccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcC--CcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcE
Q psy9620 111 PITEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSG--SNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPI 188 (453)
Q Consensus 111 p~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g--~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~ 188 (453)
++.+|++++|++.+++.+.++||..|+|+|.++|+.++++ +++|++||||||||++|++|++..+.... .+++
T Consensus 90 ~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~-----~~~~ 164 (479)
T 3fmp_B 90 SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPAN-----KYPQ 164 (479)
T ss_dssp CCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTS-----CSCC
T ss_pred CcCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcC-----CCCc
Confidence 4678999999999999999999999999999999999986 99999999999999999999998775432 4668
Q ss_pred EEEEcCCHHHHHHHHHHHHHhcCCC-CceEEEEeCCccCCCC--------------------------------------
Q psy9620 189 VLVLAPTRELAQQIQEVARDFGSST-YLRSTCVYGGASKGPQ-------------------------------------- 229 (453)
Q Consensus 189 vlil~Ptr~La~q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~-------------------------------------- 229 (453)
+|||+||++|+.|+++.+.++.... .+.+.+..++......
T Consensus 165 ~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEa 244 (479)
T 3fmp_B 165 CLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEA 244 (479)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTTCCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECCH
T ss_pred EEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCccccccccCCCCEEEECchHHHHHHHhcCCcCcccCCEEEEECH
Confidence 9999999999999999999886543 4555555554332111
Q ss_pred ---------------------CCceEEEEeccCcHHHHHHHHHhhccceEEEecccccccCccceeEEEEccc-cchhhh
Q psy9620 230 ---------------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAE-HEKENK 287 (453)
Q Consensus 230 ---------------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~k~~~ 287 (453)
..+|++++|||++..+..++..++.++..+.+..... ....+.+.+..+.. ..+...
T Consensus 245 h~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 323 (479)
T 3fmp_B 245 DVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEE-TLDTIKQYYVLCSSRDEKFQA 323 (479)
T ss_dssp HHHHTSTTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC--------------------------
T ss_pred HHHhhcCCcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCCeEEecccccc-CcCCceEEEEEeCCHHHHHHH
Confidence 5689999999999999999999999888777665442 23344444444432 334444
Q ss_pred HHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCC
Q psy9620 288 LFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVD 367 (453)
Q Consensus 288 l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip 367 (453)
+..++.. ....++||||+++..|+.++..|...++.+..+||+|++.+|..+++.|++|+.+|||||+++++|||+|
T Consensus 324 l~~~~~~---~~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip 400 (479)
T 3fmp_B 324 LCNLYGA---ITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVE 400 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHhh---ccCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCccc
Confidence 4444433 2456899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEcCCC------CChhHHHHhhhcccCCCCcceEEEEEcCCC-hHHHHHHHHHHHhcCCCCC
Q psy9620 368 DVKFVINFDYP------NNSEDYIHRIGRTGRSDNTGTSYTFFTQQN-SRQAKDLIDVLTESNHPVD 427 (453)
Q Consensus 368 ~v~~VI~~d~p------~s~~~y~qr~GRagR~g~~g~~~~~~~~~~-~~~~~~l~~~l~~~~~~v~ 427 (453)
++++||+||+| .+..+|+||+|||||.|+.|.|++|+++.+ ...++.+.+.+...-..++
T Consensus 401 ~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~~~~~~~~i~~~~~~~~~~l~ 467 (479)
T 3fmp_B 401 QVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLD 467 (479)
T ss_dssp -------------------------------------------------------------------
T ss_pred cCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEEcCcchHHHHHHHHHHhCCCceECC
Confidence 99999999999 467899999999999999999999999765 6666666666655544443
|
| >1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-48 Score=383.53 Aligned_cols=317 Identities=32% Similarity=0.531 Sum_probs=131.7
Q ss_pred CCCccccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCc
Q psy9620 108 APNPITEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGP 187 (453)
Q Consensus 108 ~p~p~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~ 187 (453)
...+..+|+++++++.+++.+.+.||..|+|+|.++++.+++++++++++|||+|||++|++|++..+.... .++
T Consensus 16 ~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~-----~~~ 90 (394)
T 1fuu_A 16 YDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSV-----KAP 90 (394)
T ss_dssp SCCCCCSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTTC-----CSC
T ss_pred cccccCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhccC-----CCC
Confidence 456678899999999999999999999999999999999999999999999999999999999998875432 467
Q ss_pred EEEEEcCCHHHHHHHHHHHHHhcCCCCceEEEEeCCccCCCC--------------------------------------
Q psy9620 188 IVLVLAPTRELAQQIQEVARDFGSSTYLRSTCVYGGASKGPQ-------------------------------------- 229 (453)
Q Consensus 188 ~vlil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~-------------------------------------- 229 (453)
++||++||++|+.|+.+.+.++....++++..++|+......
T Consensus 91 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDE 170 (394)
T 1fuu_A 91 QALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDE 170 (394)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHHHCSEEEECHHHHHHHHHTTSSCCTTCCEEEEET
T ss_pred CEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEEC
Confidence 899999999999999999999988888888888887542110
Q ss_pred ---------------------CCceEEEEeccCcHHHHHHHHHhhccceEEEecccccccCccceeEEEEcccc-chhhh
Q psy9620 230 ---------------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEH-EKENK 287 (453)
Q Consensus 230 ---------------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~k~~~ 287 (453)
+..|++++|||++..+..+...++.++..+........ ...+.+.+..+... .+...
T Consensus 171 ah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 249 (394)
T 1fuu_A 171 ADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELT-LEGIKQFYVNVEEEEYKYEC 249 (394)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC-------------------------
T ss_pred hHHhhCCCcHHHHHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcCCCeEEEecCcccc-CCCceEEEEEcCchhhHHHH
Confidence 56899999999999999988888888877665543322 22333333333322 24444
Q ss_pred HHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCC
Q psy9620 288 LFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVD 367 (453)
Q Consensus 288 l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip 367 (453)
+..++... ...++||||++++.++.+++.|...++.+..+|+++++.+|..+++.|++|+.+|||||+++++|+|+|
T Consensus 250 l~~~~~~~---~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~ 326 (394)
T 1fuu_A 250 LTDLYDSI---SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQ 326 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHhcC---CCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcc
Confidence 55554432 456899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcCCChHHHHHHHHHHHhcCCCCChHHHHH
Q psy9620 368 DVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDLIDVLTESNHPVDPKLSAL 433 (453)
Q Consensus 368 ~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~v~~~l~~~ 433 (453)
++++||++|+|.+..+|+||+||+||.|++|.|++|+++++...++.+.+++.....++|..+.++
T Consensus 327 ~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 392 (394)
T 1fuu_A 327 QVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSDIATL 392 (394)
T ss_dssp ------------------------------------------------------------------
T ss_pred cCCEEEEeCCCCCHHHHHHHcCcccCCCCCceEEEEEchhHHHHHHHHHHHhCCcccccCcchhhh
Confidence 999999999999999999999999999999999999999999999999888888877787766654
|
| >2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-44 Score=370.72 Aligned_cols=287 Identities=21% Similarity=0.331 Sum_probs=227.9
Q ss_pred ccccc--ccCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcE
Q psy9620 112 ITEFA--EANFPDYVLKEVKR-QGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPI 188 (453)
Q Consensus 112 ~~~f~--~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~ 188 (453)
...|. ++++++.+.+.|++ +||..|+|+|.++|+.+++++|+|+++|||+|||++|++|++.. .++
T Consensus 18 ~~~w~~~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~-----------~g~ 86 (591)
T 2v1x_A 18 PAAWNKEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCS-----------DGF 86 (591)
T ss_dssp GGGGCCSCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTS-----------SSE
T ss_pred hhccccccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHc-----------CCc
Confidence 34444 57788999999998 59999999999999999999999999999999999999999842 457
Q ss_pred EEEEcCCHHHHHHHHHHHHHhcCCCCceEEEEeCCccCC---------------CC------------------------
Q psy9620 189 VLVLAPTRELAQQIQEVARDFGSSTYLRSTCVYGGASKG---------------PQ------------------------ 229 (453)
Q Consensus 189 vlil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~---------------~~------------------------ 229 (453)
+|||+|+++|+.|+.+.+.+++ +++..+.++.... ..
T Consensus 87 ~lVisP~~~L~~q~~~~l~~~g----i~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~ 162 (591)
T 2v1x_A 87 TLVICPLISLMEDQLMVLKQLG----ISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYE 162 (591)
T ss_dssp EEEECSCHHHHHHHHHHHHHHT----CCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHH
T ss_pred EEEEeCHHHHHHHHHHHHHhcC----CcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhhhh
Confidence 9999999999999999999872 4444444432110 00
Q ss_pred ------------------------------------CCceEEEEeccCcHHHHHHHHHhhccceEEEecccccccCccce
Q psy9620 230 ------------------------------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQ 273 (453)
Q Consensus 230 ------------------------------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 273 (453)
+..+++++|||+++.+...+..++.......+... ....++.
T Consensus 163 ~~~i~~iViDEAH~is~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~~--~~r~nl~ 240 (591)
T 2v1x_A 163 ARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTAS--FNRPNLY 240 (591)
T ss_dssp TTCEEEEEEETGGGGSTTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEECC--CCCTTEE
T ss_pred ccCCcEEEEECcccccccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEecC--CCCcccE
Confidence 57899999999999988777777654322222111 1122333
Q ss_pred eEEEEccccchhhhHHHHHHhhhc-CCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCc
Q psy9620 274 QVVEVCAEHEKENKLFGLLNDISS-KDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAG 352 (453)
Q Consensus 274 ~~~~~~~~~~k~~~l~~ll~~~~~-~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~ 352 (453)
..+.... ..+...+..++..+.. ....++||||++++.++.++..|...++.+..+|++|++.+|..++++|++|+.+
T Consensus 241 ~~v~~~~-~~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~ 319 (591)
T 2v1x_A 241 YEVRQKP-SNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQ 319 (591)
T ss_dssp EEEEECC-SSHHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSSS
T ss_pred EEEEeCC-CcHHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCe
Confidence 2222221 1122333333333322 2467999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeccCccCCCCCCCcEEEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcCCChHHHHHHH
Q psy9620 353 ILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDLI 416 (453)
Q Consensus 353 vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~ 416 (453)
|||||+++++|||+|+|++||||++|.|++.|+||+|||||.|.+|.|++|+++.|...++.++
T Consensus 320 VlVAT~a~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~~~~~~~~ 383 (591)
T 2v1x_A 320 VVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRISSMV 383 (591)
T ss_dssp EEEECTTSCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHT
T ss_pred EEEEechhhcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEEEChHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999988776665554
|
| >1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-43 Score=361.27 Aligned_cols=281 Identities=21% Similarity=0.378 Sum_probs=229.4
Q ss_pred ccccccCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEE
Q psy9620 113 TEFAEANFPDYVLKEVKR-QGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLV 191 (453)
Q Consensus 113 ~~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vli 191 (453)
.+|++++|++.+.+.|++ +||..|+|+|.++|+.+++++|+++++|||+|||++|++|++.. ...+||
T Consensus 2 ~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~-----------~g~~lv 70 (523)
T 1oyw_A 2 AQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL-----------NGLTVV 70 (523)
T ss_dssp CCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS-----------SSEEEE
T ss_pred CChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh-----------CCCEEE
Confidence 579999999999999998 79999999999999999999999999999999999999999842 346999
Q ss_pred EcCCHHHHHHHHHHHHHhcCCCCceEEEEeCCccCCC-------------C-----------------------------
Q psy9620 192 LAPTRELAQQIQEVARDFGSSTYLRSTCVYGGASKGP-------------Q----------------------------- 229 (453)
Q Consensus 192 l~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~-------------~----------------------------- 229 (453)
|+|+++|+.|+.+.+.+++ +.+..+.++..... .
T Consensus 71 i~P~~aL~~q~~~~l~~~g----i~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViD 146 (523)
T 1oyw_A 71 VSPLISLMKDQVDQLQANG----VAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVD 146 (523)
T ss_dssp ECSCHHHHHHHHHHHHHTT----CCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEES
T ss_pred ECChHHHHHHHHHHHHHcC----CcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEe
Confidence 9999999999999998863 44554444332110 0
Q ss_pred --------------------------CCceEEEEeccCcHHHHHHHHHhh--ccceEEEecccccccCccceeEEEEccc
Q psy9620 230 --------------------------PDRQVLMWSATWPREVQKLAEDFL--DSYIQINIGSLTLSANHNIQQVVEVCAE 281 (453)
Q Consensus 230 --------------------------~~~q~v~~SAT~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 281 (453)
+..+++++|||++..+...+...+ .++. +.+... ...++. +.....
T Consensus 147 EaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~-~~~~~~---~r~~l~--~~v~~~ 220 (523)
T 1oyw_A 147 EAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPL-IQISSF---DRPNIR--YMLMEK 220 (523)
T ss_dssp SGGGGCTTSSCCCHHHHGGGGHHHHCTTSCEEEEESCCCHHHHHHHHHHHTCCSCE-EEECCC---CCTTEE--EEEEEC
T ss_pred CccccCcCCCccHHHHHHHHHHHHhCCCCCEEEEeCCCCHHHHHHHHHHhCCCCCe-EEeCCC---CCCceE--EEEEeC
Confidence 568999999999988765444333 2333 222221 122332 222333
Q ss_pred cchhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCc
Q psy9620 282 HEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAA 361 (453)
Q Consensus 282 ~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~ 361 (453)
..+...+..++.. ....++||||+|++.++.+++.|...++.+..+|++|++.+|..+++.|++|+.+|||||++++
T Consensus 221 ~~~~~~l~~~l~~---~~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~ 297 (523)
T 1oyw_A 221 FKPLDQLMRYVQE---QRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFG 297 (523)
T ss_dssp SSHHHHHHHHHHH---TTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSC
T ss_pred CCHHHHHHHHHHh---cCCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhh
Confidence 4445555555543 3567999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCcEEEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcCCChHHHHHHHH
Q psy9620 362 RGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDLID 417 (453)
Q Consensus 362 ~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~ 417 (453)
+|||+|+|++|||+|+|.|+++|+||+||+||.|.+|.|++|+++.|....+.+++
T Consensus 298 ~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~~~~~~~~~ 353 (523)
T 1oyw_A 298 MGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLE 353 (523)
T ss_dssp TTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHHH
T ss_pred CCCCccCccEEEEECCCCCHHHHHHHhccccCCCCCceEEEEeCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999888777666554
|
| >2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-43 Score=339.22 Aligned_cols=276 Identities=33% Similarity=0.532 Sum_probs=230.2
Q ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHH
Q psy9620 120 FPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELA 199 (453)
Q Consensus 120 l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La 199 (453)
|++.+.+.++++||..|+|+|.++++.+++++++++++|||+|||++|++|++.. ++++||++|+++|+
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~-----------~~~~liv~P~~~L~ 69 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL-----------GMKSLVVTPTRELT 69 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH-----------TCCEEEECSSHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh-----------cCCEEEEeCCHHHH
Confidence 5789999999999999999999999999999999999999999999999998863 44699999999999
Q ss_pred HHHHHHHHHhcCCCCceEEEEeCCccCCC--------C------------------------------------------
Q psy9620 200 QQIQEVARDFGSSTYLRSTCVYGGASKGP--------Q------------------------------------------ 229 (453)
Q Consensus 200 ~q~~~~~~~~~~~~~~~~~~~~gg~~~~~--------~------------------------------------------ 229 (453)
.|+.+.+++++...++++..++++..... .
T Consensus 70 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~ 149 (337)
T 2z0m_A 70 RQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRVRNADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGFIDD 149 (337)
T ss_dssp HHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHHHTTCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHHTTCHHH
T ss_pred HHHHHHHHHHhhhcCCcEEEEECCcchHHHHhhcCCCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhccccHHH
Confidence 99999999998888888888888754211 1
Q ss_pred ---------CCceEEEEeccCcHHHHHHHHHhhccceEEEecccccccCccceeEEEEccccchhhhHHHHHHhhhcCCC
Q psy9620 230 ---------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDE 300 (453)
Q Consensus 230 ---------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~ 300 (453)
...+++++|||++..+.+....++.++..+... .....+.+.+...... .......+ .....
T Consensus 150 ~~~~~~~~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~--~~~~~~~~---~~~~~ 220 (337)
T 2z0m_A 150 IKIILAQTSNRKITGLFSATIPEEIRKVVKDFITNYEEIEAC----IGLANVEHKFVHVKDD--WRSKVQAL---RENKD 220 (337)
T ss_dssp HHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHSCSCEEEECS----GGGGGEEEEEEECSSS--SHHHHHHH---HTCCC
T ss_pred HHHHHhhCCcccEEEEEeCcCCHHHHHHHHHhcCCceeeecc----cccCCceEEEEEeChH--HHHHHHHH---HhCCC
Confidence 467889999999999999999888877655332 1223344444333322 22222333 33456
Q ss_pred CcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEEEcCCCCC
Q psy9620 301 NKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVINFDYPNN 380 (453)
Q Consensus 301 ~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s 380 (453)
.++||||++++.++.+++.|. .+..+|++++..+|..++++|++|+.+|||||+++++|+|+|++++||++++|.+
T Consensus 221 ~~~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s 296 (337)
T 2z0m_A 221 KGVIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQD 296 (337)
T ss_dssp SSEEEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSCCSS
T ss_pred CcEEEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecCCCC
Confidence 799999999999999999886 5789999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhhcccCCCCcceEEEEEcCCChHHHHHHHHHHH
Q psy9620 381 SEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDLIDVLT 420 (453)
Q Consensus 381 ~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~l~ 420 (453)
..+|+||+||+||.|++|.|++|+. .+....+.+.+.++
T Consensus 297 ~~~~~Q~~GR~gR~g~~g~~~~~~~-~~~~~~~~i~~~~~ 335 (337)
T 2z0m_A 297 LRTYIHRIGRTGRMGRKGEAITFIL-NEYWLEKEVKKVSQ 335 (337)
T ss_dssp HHHHHHHHTTBCGGGCCEEEEEEES-SCHHHHHHHC----
T ss_pred HHHhhHhcCccccCCCCceEEEEEe-CcHHHHHHHHHHhc
Confidence 9999999999999999999999999 78788887776654
|
| >2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-39 Score=344.08 Aligned_cols=285 Identities=21% Similarity=0.253 Sum_probs=218.4
Q ss_pred cccccCCCHHHHHHHHHCCCCCCCHHHHHHHHH-HhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEE
Q psy9620 114 EFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPI-AMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVL 192 (453)
Q Consensus 114 ~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~-i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil 192 (453)
+|++++|++.+.+.+++.||..|+++|.++++. +.+++++++++|||||||++|.+|++..+... +.++||+
T Consensus 2 ~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~-------~~~~l~i 74 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQ-------GGKAVYI 74 (720)
T ss_dssp BGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH-------CSEEEEE
T ss_pred cHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC-------CCEEEEE
Confidence 689999999999999999999999999999998 88999999999999999999999999887642 5689999
Q ss_pred cCCHHHHHHHHHHHHHhcCCCCceEEEEeCCccCCCC-------------------------------------------
Q psy9620 193 APTRELAQQIQEVARDFGSSTYLRSTCVYGGASKGPQ------------------------------------------- 229 (453)
Q Consensus 193 ~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~------------------------------------------- 229 (453)
+|+++|+.|+++.++++.. .++++..++|+......
T Consensus 75 ~P~raLa~q~~~~~~~l~~-~g~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~ 153 (720)
T 2zj8_A 75 VPLKALAEEKFQEFQDWEK-IGLRVAMATGDYDSKDEWLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLIGSR 153 (720)
T ss_dssp CSSGGGHHHHHHHTGGGGG-GTCCEEEECSCSSCCCGGGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCT
T ss_pred cCcHHHHHHHHHHHHHHHh-cCCEEEEecCCCCccccccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCcccCCC
Confidence 9999999999999976543 47888888887654331
Q ss_pred --------------CCceEEEEeccCcHHHHHHHHHhhccceEEEecccccccCccceeEEEEcccc-chhhhHHHHHHh
Q psy9620 230 --------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEH-EKENKLFGLLND 294 (453)
Q Consensus 230 --------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~k~~~l~~ll~~ 294 (453)
.+.|+|++|||++. ...+++++....+..................+...... .....+..++..
T Consensus 154 ~r~~~~~~ll~~l~~~~~ii~lSATl~n-~~~~~~~l~~~~~~~~~rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (720)
T 2zj8_A 154 DRGATLEVILAHMLGKAQIIGLSATIGN-PEELAEWLNAELIVSDWRPVKLRRGVFYQGFVTWEDGSIDRFSSWEELVYD 232 (720)
T ss_dssp TTHHHHHHHHHHHBTTBEEEEEECCCSC-HHHHHHHTTEEEEECCCCSSEEEEEEEETTEEEETTSCEEECSSTTHHHHH
T ss_pred cccHHHHHHHHHhhcCCeEEEEcCCcCC-HHHHHHHhCCcccCCCCCCCcceEEEEeCCeeeccccchhhhhHHHHHHHH
Confidence 36899999999975 45555554322111100000000000000011111100 001122223332
Q ss_pred hhcCCCCcEEEEEcchhHHHHHHHHHHhc---------------------------------CCeEEEEcCCCCHHHHHH
Q psy9620 295 ISSKDENKTIIFAETKRKVDKITKSIQNY---------------------------------GWAAVGIHGDKSQQERDY 341 (453)
Q Consensus 295 ~~~~~~~~~lVF~~s~~~~~~l~~~L~~~---------------------------------~~~~~~~h~~~~~~~r~~ 341 (453)
... ..+++||||+++++|+.++..|.+. ...+.++|++|++.+|..
T Consensus 233 ~~~-~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~ 311 (720)
T 2zj8_A 233 AIR-KKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVL 311 (720)
T ss_dssp HHH-TTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHH
T ss_pred HHh-CCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHH
Confidence 222 3579999999999999999998753 124899999999999999
Q ss_pred HHHHHhcCCCcEEEEeccCccCCCCCCCcEEEE----cC----CCCChhHHHHhhhcccCCC--CcceEEEEEcCCC
Q psy9620 342 VLKEFRNGRAGILVATDVAARGLDVDDVKFVIN----FD----YPNNSEDYIHRIGRTGRSD--NTGTSYTFFTQQN 408 (453)
Q Consensus 342 ~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~----~d----~p~s~~~y~qr~GRagR~g--~~g~~~~~~~~~~ 408 (453)
+++.|++|.++|||||+++++|||+|++++||+ || .|.+..+|+||+|||||.| ..|.|++++++.+
T Consensus 312 v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~ 388 (720)
T 2zj8_A 312 VEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDD 388 (720)
T ss_dssp HHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEEEEEECSSSC
T ss_pred HHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCceEEEEecCcc
Confidence 999999999999999999999999999999998 77 5899999999999999987 5799999999877
|
| >2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-39 Score=339.27 Aligned_cols=287 Identities=20% Similarity=0.292 Sum_probs=216.6
Q ss_pred cccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHH-HhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEE
Q psy9620 112 ITEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPI-AMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVL 190 (453)
Q Consensus 112 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~-i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vl 190 (453)
..+|++++|++.+.+.+++.||..|+|+|.++++. +.++++++++||||||||+++.++++..+.. .+.++|
T Consensus 7 ~~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~-------~~~~il 79 (715)
T 2va8_A 7 WMPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLK-------NGGKAI 79 (715)
T ss_dssp CCBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHH-------SCSEEE
T ss_pred cCcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHH-------CCCeEE
Confidence 35799999999999999999999999999999999 7789999999999999999999999988764 256899
Q ss_pred EEcCCHHHHHHHHHHHHHhcCCCCceEEEEeCCccCCCC-----------------------------------------
Q psy9620 191 VLAPTRELAQQIQEVARDFGSSTYLRSTCVYGGASKGPQ----------------------------------------- 229 (453)
Q Consensus 191 il~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~----------------------------------------- 229 (453)
|++|+++||.|+++.++.+. ..++++..++|+......
T Consensus 80 ~i~P~r~La~q~~~~~~~~~-~~g~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~ 158 (715)
T 2va8_A 80 YVTPLRALTNEKYLTFKDWE-LIGFKVAMTSGDYDTDDAWLKNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHYLN 158 (715)
T ss_dssp EECSCHHHHHHHHHHHGGGG-GGTCCEEECCSCSSSCCGGGGGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGGGG
T ss_pred EEeCcHHHHHHHHHHHHHhh-cCCCEEEEEeCCCCCchhhcCCCCEEEEcHHHHHHHHhCChhHhhccCEEEEechhhcC
Confidence 99999999999999996553 347788888887654431
Q ss_pred ---------------CCceEEEEeccCcHHHHHHHHHhhccceEEEecccccc------cCccceeEEEEcccc----ch
Q psy9620 230 ---------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLS------ANHNIQQVVEVCAEH----EK 284 (453)
Q Consensus 230 ---------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~i~~~~~~~~~~----~k 284 (453)
.+.|+|++|||++. ...+++++....+.......... ........+.+.... ..
T Consensus 159 ~~~~~~~l~~i~~~~~~~~ii~lSATl~n-~~~~~~~l~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (715)
T 2va8_A 159 DPERGPVVESVTIRAKRRNLLALSATISN-YKQIAKWLGAEPVATNWRPVPLIEGVIYPERKKKEYNVIFKDNTTKKVHG 237 (715)
T ss_dssp CTTTHHHHHHHHHHHHTSEEEEEESCCTT-HHHHHHHHTCEEEECCCCSSCEEEEEEEECSSTTEEEEEETTSCEEEEES
T ss_pred CcccchHHHHHHHhcccCcEEEEcCCCCC-HHHHHHHhCCCccCCCCCCCCceEEEEecCCcccceeeecCcchhhhccc
Confidence 46899999999964 45666655322111110000000 000000011111100 00
Q ss_pred hhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcC------------------------------------CeEE
Q psy9620 285 ENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYG------------------------------------WAAV 328 (453)
Q Consensus 285 ~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~------------------------------------~~~~ 328 (453)
...+..++..... ..+++||||+++++++.++..|.... ..+.
T Consensus 238 ~~~~~~~~~~~~~-~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~ 316 (715)
T 2va8_A 238 DDAIIAYTLDSLS-KNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVA 316 (715)
T ss_dssp SSHHHHHHHHHHT-TTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEE
T ss_pred chHHHHHHHHHHh-cCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEE
Confidence 1233334433332 46799999999999999999998642 2489
Q ss_pred EEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEEE----cC-------CCCChhHHHHhhhcccCCC--
Q psy9620 329 GIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVIN----FD-------YPNNSEDYIHRIGRTGRSD-- 395 (453)
Q Consensus 329 ~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~----~d-------~p~s~~~y~qr~GRagR~g-- 395 (453)
++|++|++.+|..+++.|++|.++|||||+++++|||+|++++||+ || .|.|..+|+||+|||||.|
T Consensus 317 ~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR~g~~ 396 (715)
T 2va8_A 317 YHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGRPGFD 396 (715)
T ss_dssp EECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTTBCCTTTC
T ss_pred EECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhcCCCCCC
Confidence 9999999999999999999999999999999999999999999999 99 8999999999999999987
Q ss_pred CcceEEEEEcCCC
Q psy9620 396 NTGTSYTFFTQQN 408 (453)
Q Consensus 396 ~~g~~~~~~~~~~ 408 (453)
..|.|++++++.+
T Consensus 397 ~~G~~~~l~~~~~ 409 (715)
T 2va8_A 397 QIGESIVVVRDKE 409 (715)
T ss_dssp SCEEEEEECSCGG
T ss_pred CCceEEEEeCCch
Confidence 4799999998765
|
| >3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-39 Score=320.89 Aligned_cols=267 Identities=25% Similarity=0.326 Sum_probs=211.2
Q ss_pred HHHHHHH-CCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHH
Q psy9620 124 VLKEVKR-QGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQI 202 (453)
Q Consensus 124 l~~~l~~-~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~ 202 (453)
+.+.+++ .+| +|+|+|.++++.+++++|+++++|||||||++|++|++..+. .++++|||+||++|+.|+
T Consensus 10 ~~~~l~~~~~~-~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~~--------~~~~~lil~Pt~~L~~q~ 80 (414)
T 3oiy_A 10 FRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLAR--------KGKKSALVFPTVTLVKQT 80 (414)
T ss_dssp HHHHHHHHHSS-CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHHT--------TTCCEEEEESSHHHHHHH
T ss_pred HHHHHHHhcCC-CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHhc--------CCCEEEEEECCHHHHHHH
Confidence 3444544 366 899999999999999999999999999999999999887652 467899999999999999
Q ss_pred HHHHHHhcCCCCceEEEEeCCccCC-------------CC----------------------------------------
Q psy9620 203 QEVARDFGSSTYLRSTCVYGGASKG-------------PQ---------------------------------------- 229 (453)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~gg~~~~-------------~~---------------------------------------- 229 (453)
.+.+++++. .++++..++|+.+.. ..
T Consensus 81 ~~~~~~~~~-~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~iViDEaH~~~~~~~~~d 159 (414)
T 3oiy_A 81 LERLQKLAD-EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDFVFVDDVDAVLKASRNID 159 (414)
T ss_dssp HHHHHHHCC-SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCCSEEEESCHHHHHHCHHHHH
T ss_pred HHHHHHHcc-CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhccccccEEEEeChHhhhhccchhh
Confidence 999999987 778888888876540 11
Q ss_pred --------------------------------CCceEEEEecc-CcHHHH-HHHHHhhccceEEEecccccccCccceeE
Q psy9620 230 --------------------------------PDRQVLMWSAT-WPREVQ-KLAEDFLDSYIQINIGSLTLSANHNIQQV 275 (453)
Q Consensus 230 --------------------------------~~~q~v~~SAT-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 275 (453)
...|++++||| +|..+. .+...++. +.+.... .....+.+.
T Consensus 160 ~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~----~~~~~~~-~~~~~i~~~ 234 (414)
T 3oiy_A 160 TLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLV-SVARNITHV 234 (414)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS----CCSSCCC-CCCCSEEEE
T ss_pred hHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhc----cCcCccc-cccccchhe
Confidence 22588899999 565443 22233322 1111111 222344444
Q ss_pred EEEccccchhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEE-EEcCCCCHHHHHHHHHHHhcCCCcEE
Q psy9620 276 VEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAV-GIHGDKSQQERDYVLKEFRNGRAGIL 354 (453)
Q Consensus 276 ~~~~~~~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~-~~h~~~~~~~r~~~~~~f~~g~~~vL 354 (453)
+... ++...+..++... ..++||||+++..|+.++..|...++.+. .+||. +|. ++.|++|+++||
T Consensus 235 ~~~~---~~~~~l~~~l~~~----~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~g~~~vL 301 (414)
T 3oiy_A 235 RISS---RSKEKLVELLEIF----RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFKVGKINIL 301 (414)
T ss_dssp EESS---CCHHHHHHHHHHH----CSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHHTTSCSEE
T ss_pred eecc---CHHHHHHHHHHHc----CCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHhCCCCeEE
Confidence 4333 4666677777662 47999999999999999999999999998 89994 444 999999999999
Q ss_pred EE----eccCccCCCCCC-CcEEEEcCCC--CChhHHHHhhhcccCCC----CcceEEEEEcCCChHHHHHHHHHHH
Q psy9620 355 VA----TDVAARGLDVDD-VKFVINFDYP--NNSEDYIHRIGRTGRSD----NTGTSYTFFTQQNSRQAKDLIDVLT 420 (453)
Q Consensus 355 va----T~~~~~GiDip~-v~~VI~~d~p--~s~~~y~qr~GRagR~g----~~g~~~~~~~~~~~~~~~~l~~~l~ 420 (453)
|| |+++++|||+|+ |++||+||+| .+..+|+||+||+||.| ..|.|++|+ .+...++.+.+.+.
T Consensus 302 vat~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~--~~~~~~~~l~~~~~ 376 (414)
T 3oiy_A 302 IGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKTRLL 376 (414)
T ss_dssp EEECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC--CCHHHHHHHHHHHH
T ss_pred EEecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE--ccHHHHHHHHHHhc
Confidence 99 999999999999 9999999999 99999999999999987 579999998 66777777777777
|
| >2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-39 Score=339.69 Aligned_cols=278 Identities=22% Similarity=0.299 Sum_probs=215.0
Q ss_pred cccccC--CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEE
Q psy9620 114 EFAEAN--FPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLV 191 (453)
Q Consensus 114 ~f~~~~--l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vli 191 (453)
+|++++ |++.+.+.+++.||..|+|+|.++++.++++++++++||||||||++|.+|++..+.. ++++||
T Consensus 2 ~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~--------~~~~l~ 73 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK--------GGKSLY 73 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT--------TCCEEE
T ss_pred chhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHh--------CCcEEE
Confidence 578888 9999999999999999999999999999999999999999999999999999987653 456999
Q ss_pred EcCCHHHHHHHHHHHHHhcCCCCceEEEEeCCccCCCC------------------------------------------
Q psy9620 192 LAPTRELAQQIQEVARDFGSSTYLRSTCVYGGASKGPQ------------------------------------------ 229 (453)
Q Consensus 192 l~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~------------------------------------------ 229 (453)
++|+++||.|+++.++.+. ..++++..++|+......
T Consensus 74 i~P~r~La~q~~~~~~~~~-~~g~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l~~ 152 (702)
T 2p6r_A 74 VVPLRALAGEKYESFKKWE-KIGLRIGISTGDYESRDEHLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDS 152 (702)
T ss_dssp EESSHHHHHHHHHHHTTTT-TTTCCEEEECSSCBCCSSCSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGC
T ss_pred EeCcHHHHHHHHHHHHHHH-hcCCEEEEEeCCCCcchhhccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeeecCC
Confidence 9999999999999996553 457888888887654331
Q ss_pred ------------------CCceEEEEeccCcHHHHHHHHHhhccceEEEecccccccCccceeE------EEEccccc--
Q psy9620 230 ------------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQV------VEVCAEHE-- 283 (453)
Q Consensus 230 ------------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~------~~~~~~~~-- 283 (453)
++.|+|++|||++. ...+++++....+...... ..+... +.......
T Consensus 153 ~~r~~~~~~ll~~l~~~~~~~~ii~lSATl~n-~~~~~~~l~~~~~~~~~r~------~~l~~~~~~~~~~~~~~~~~~~ 225 (702)
T 2p6r_A 153 EKRGATLEILVTKMRRMNKALRVIGLSATAPN-VTEIAEWLDADYYVSDWRP------VPLVEGVLCEGTLELFDGAFST 225 (702)
T ss_dssp TTTHHHHHHHHHHHHHHCTTCEEEEEECCCTT-HHHHHHHTTCEEEECCCCS------SCEEEEEECSSEEEEEETTEEE
T ss_pred CCcccHHHHHHHHHHhcCcCceEEEECCCcCC-HHHHHHHhCCCcccCCCCC------ccceEEEeeCCeeeccCcchhh
Confidence 46899999999974 5666665542221111110 111111 11111110
Q ss_pred -hhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhc------------------------------CCeEEEEcC
Q psy9620 284 -KENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNY------------------------------GWAAVGIHG 332 (453)
Q Consensus 284 -k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~------------------------------~~~~~~~h~ 332 (453)
+...+..++..... ..+++||||+++++++.++..|... ...+.++|+
T Consensus 226 ~~~~~~~~~~~~~~~-~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~ 304 (702)
T 2p6r_A 226 SRRVKFEELVEECVA-ENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHA 304 (702)
T ss_dssp EEECCHHHHHHHHHH-TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECT
T ss_pred hhhhhHHHHHHHHHh-cCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecC
Confidence 11112333333322 4679999999999999999998753 135788999
Q ss_pred CCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEEE----cC---CCCChhHHHHhhhcccCCC--CcceEEEE
Q psy9620 333 DKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVIN----FD---YPNNSEDYIHRIGRTGRSD--NTGTSYTF 403 (453)
Q Consensus 333 ~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~----~d---~p~s~~~y~qr~GRagR~g--~~g~~~~~ 403 (453)
+|++.+|..+++.|++|+++|||||+++++|||+|++++||+ || .|.+..+|+||+|||||.| ..|.|+++
T Consensus 305 ~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l 384 (702)
T 2p6r_A 305 GLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIII 384 (702)
T ss_dssp TSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEE
T ss_pred CCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEE
Confidence 999999999999999999999999999999999999999998 76 7899999999999999997 47999999
Q ss_pred EcCCC
Q psy9620 404 FTQQN 408 (453)
Q Consensus 404 ~~~~~ 408 (453)
+++.+
T Consensus 385 ~~~~~ 389 (702)
T 2p6r_A 385 VGKRD 389 (702)
T ss_dssp CCGGG
T ss_pred ecCcc
Confidence 98876
|
| >3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-38 Score=345.18 Aligned_cols=280 Identities=16% Similarity=0.183 Sum_probs=213.4
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEE
Q psy9620 113 TEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVL 192 (453)
Q Consensus 113 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil 192 (453)
..|...++++.+...+...++..|+++|.++|+.+++++++|++||||||||++|++|++..+. .++++||+
T Consensus 162 ~~~~~~~l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~--------~g~rvlvl 233 (1108)
T 3l9o_A 162 PNYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK--------NKQRVIYT 233 (1108)
T ss_dssp SCCCSSTTTTTCCCSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHH--------TTCEEEEE
T ss_pred CCcccCCCChhhhHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHh--------cCCeEEEE
Confidence 3566677777666666566666899999999999999999999999999999999999998874 36689999
Q ss_pred cCCHHHHHHHHHHHHHhcCCCCceEEEEeCCccCCCC-------------------------------------------
Q psy9620 193 APTRELAQQIQEVARDFGSSTYLRSTCVYGGASKGPQ------------------------------------------- 229 (453)
Q Consensus 193 ~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~------------------------------------------- 229 (453)
+||++|+.|+++.+.+++. .+..++|+......
T Consensus 234 ~PtraLa~Q~~~~l~~~~~----~VglltGd~~~~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l~d~~rg~ 309 (1108)
T 3l9o_A 234 SPIKALSNQKYRELLAEFG----DVGLMTGDITINPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGV 309 (1108)
T ss_dssp ESSHHHHHHHHHHHHHHTS----SEEEECSSCBCCCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGTTSHHHHH
T ss_pred cCcHHHHHHHHHHHHHHhC----CccEEeCccccCCCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhhccccchHH
Confidence 9999999999999999864 56667777665443
Q ss_pred ----------CCceEEEEeccCcHH--HHHHHHHhhccceEEEecccccccCccceeEEEE---------ccccc-----
Q psy9620 230 ----------PDRQVLMWSATWPRE--VQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEV---------CAEHE----- 283 (453)
Q Consensus 230 ----------~~~q~v~~SAT~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---------~~~~~----- 283 (453)
...|+|+||||+|.. +..++..+...+..+...... ...+...+.. +....
T Consensus 310 ~~e~ii~~l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~r---p~pl~~~~~~~~~~~~~~~vd~~~~~~~~ 386 (1108)
T 3l9o_A 310 VWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFR---PTPLQHYLFPAHGDGIYLVVDEKSTFREE 386 (1108)
T ss_dssp HHHHHHHHSCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCC---SSCEEEEEEETTSSCCEEEEETTTEECHH
T ss_pred HHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCC---cccceEEEeecCCcceeeeeccccchhhh
Confidence 578999999999764 335555555554444332211 1111111110 00000
Q ss_pred --------------------------------------hhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCC
Q psy9620 284 --------------------------------------KENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGW 325 (453)
Q Consensus 284 --------------------------------------k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~ 325 (453)
....+..++..+......++||||+++..|+.++..|...++
T Consensus 387 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~ 466 (1108)
T 3l9o_A 387 NFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDF 466 (1108)
T ss_dssp HHHHHHTTC-----------------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHH
T ss_pred hHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhccC
Confidence 033445555555555567999999999999999999864322
Q ss_pred e---------------------------------------EEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCC
Q psy9620 326 A---------------------------------------AVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDV 366 (453)
Q Consensus 326 ~---------------------------------------~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDi 366 (453)
. +..+||+|++.+|..+++.|++|.++|||||+++++|||+
T Consensus 467 ~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla~GIDi 546 (1108)
T 3l9o_A 467 NSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNM 546 (1108)
T ss_dssp HCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCCCSCCCC
T ss_pred CCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECcHHhcCCCC
Confidence 2 7899999999999999999999999999999999999999
Q ss_pred CCCcEEEEcCC--------CCChhHHHHhhhcccCCC--CcceEEEEEcCC
Q psy9620 367 DDVKFVINFDY--------PNNSEDYIHRIGRTGRSD--NTGTSYTFFTQQ 407 (453)
Q Consensus 367 p~v~~VI~~d~--------p~s~~~y~qr~GRagR~g--~~g~~~~~~~~~ 407 (453)
|++++||+++. |.|..+|+||+|||||.| ..|.|++++++.
T Consensus 547 P~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~ 597 (1108)
T 3l9o_A 547 PAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEK 597 (1108)
T ss_dssp --CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCC
T ss_pred CCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCC
Confidence 99999997765 347788999999999998 678999998876
|
| >2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-39 Score=341.41 Aligned_cols=283 Identities=22% Similarity=0.249 Sum_probs=177.3
Q ss_pred HHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHH
Q psy9620 126 KEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEV 205 (453)
Q Consensus 126 ~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~ 205 (453)
+++..+||..|+++|.++++.+++++|+|+++|||+|||++|++|++..+...+. ..++++|||+||++|+.|+.+.
T Consensus 4 ~~l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~---~~~~~~lvl~Pt~~L~~Q~~~~ 80 (696)
T 2ykg_A 4 SDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQ---GQKGKVVFFANQIPVYEQNKSV 80 (696)
T ss_dssp ---CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCT---TCCCCEEEECSSHHHHHHHHHH
T ss_pred CcccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCcc---CCCCeEEEEECCHHHHHHHHHH
Confidence 4566789999999999999999999999999999999999999999988765432 1236799999999999999999
Q ss_pred HHHhcCCCCceEEEEeCCccCCCC--------------------------------------------------------
Q psy9620 206 ARDFGSSTYLRSTCVYGGASKGPQ-------------------------------------------------------- 229 (453)
Q Consensus 206 ~~~~~~~~~~~~~~~~gg~~~~~~-------------------------------------------------------- 229 (453)
+++++...++++..++|+.....+
T Consensus 81 ~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~~~i~~~ 160 (696)
T 2ykg_A 81 FSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFN 160 (696)
T ss_dssp HHHHTTTTTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHHHHHHHH
T ss_pred HHHHhccCCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccHHHHHHH
Confidence 999988788999999988754322
Q ss_pred -----------CCceEEEEeccCc-------HHHHHHHHHhh----------------------ccceEEEecccccc--
Q psy9620 230 -----------PDRQVLMWSATWP-------REVQKLAEDFL----------------------DSYIQINIGSLTLS-- 267 (453)
Q Consensus 230 -----------~~~q~v~~SAT~~-------~~~~~~~~~~~----------------------~~~~~~~~~~~~~~-- 267 (453)
+..+++++|||+. .+....+..++ ..+...........
T Consensus 161 ~l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~ 240 (696)
T 2ykg_A 161 YLDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISD 240 (696)
T ss_dssp HHHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCSCC
T ss_pred HHHHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCcccCC
Confidence 2378999999986 22211111111 11110000000000
Q ss_pred --------------------------------------------------------------------------------
Q psy9620 268 -------------------------------------------------------------------------------- 267 (453)
Q Consensus 268 -------------------------------------------------------------------------------- 267 (453)
T Consensus 241 ~fs~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~ 320 (696)
T 2ykg_A 241 KFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYN 320 (696)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHh
Confidence
Q ss_pred ----------------------------cCccceeEEEE----------------ccccchhhhHHHHHHhhhc-CCCCc
Q psy9620 268 ----------------------------ANHNIQQVVEV----------------CAEHEKENKLFGLLNDISS-KDENK 302 (453)
Q Consensus 268 ----------------------------~~~~i~~~~~~----------------~~~~~k~~~l~~ll~~~~~-~~~~~ 302 (453)
....+.+.+.. .....|...|..++..... ....+
T Consensus 321 ~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~ 400 (696)
T 2ykg_A 321 DALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETI 400 (696)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTCTTCC
T ss_pred HHHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccCCCCc
Confidence 00000000000 0123345555555554422 24569
Q ss_pred EEEEEcchhHHHHHHHHHHhcC----CeEEEE--------cCCCCHHHHHHHHHHHhc-CCCcEEEEeccCccCCCCCCC
Q psy9620 303 TIIFAETKRKVDKITKSIQNYG----WAAVGI--------HGDKSQQERDYVLKEFRN-GRAGILVATDVAARGLDVDDV 369 (453)
Q Consensus 303 ~lVF~~s~~~~~~l~~~L~~~~----~~~~~~--------h~~~~~~~r~~~~~~f~~-g~~~vLvaT~~~~~GiDip~v 369 (453)
+||||+++..++.+++.|...+ +.+..+ |++|++.+|..++++|++ |+.+|||||+++++|||+|+|
T Consensus 401 ~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~GiDip~v 480 (696)
T 2ykg_A 401 TILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQC 480 (696)
T ss_dssp EEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEESSCCC---CCC
T ss_pred EEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhhcCCcCccC
Confidence 9999999999999999999987 788888 569999999999999998 999999999999999999999
Q ss_pred cEEEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcCCChHHHH
Q psy9620 370 KFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAK 413 (453)
Q Consensus 370 ~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~ 413 (453)
++||+||+|.|.++|+||+|| ||. ..|.|+++++..+.....
T Consensus 481 ~~VI~~d~p~s~~~~~Qr~GR-GR~-~~g~~~~l~~~~~~~~~~ 522 (696)
T 2ykg_A 481 NLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAGVIEKE 522 (696)
T ss_dssp SEEEEESCC--CCCC-----------CCCEEEEEESCHHHHHHH
T ss_pred CEEEEeCCCCCHHHHHHhhcc-CcC-CCceEEEEecCCCHHHHH
Confidence 999999999999999999999 998 789999999887664433
|
| >4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-37 Score=319.81 Aligned_cols=273 Identities=22% Similarity=0.246 Sum_probs=157.4
Q ss_pred CCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhcCC
Q psy9620 133 FDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGSS 212 (453)
Q Consensus 133 ~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~~~ 212 (453)
..+|+|+|.++++.+++++|+++++|||+|||++|++|++..+...+. ..++++|||+||++|+.|+.+.+++++..
T Consensus 5 ~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~---~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 81 (556)
T 4a2p_A 5 TKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPA---GRKAKVVFLATKVPVYEQQKNVFKHHFER 81 (556)
T ss_dssp ---CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS---SCCCCEEEECSSHHHHHHHHHHHHHHHGG
T ss_pred CCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcc---cCCCeEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 348999999999999999999999999999999999999988876432 23678999999999999999999999877
Q ss_pred CCceEEEEeCCccCCCC---------------------------------------------------------------
Q psy9620 213 TYLRSTCVYGGASKGPQ--------------------------------------------------------------- 229 (453)
Q Consensus 213 ~~~~~~~~~gg~~~~~~--------------------------------------------------------------- 229 (453)
.++++..++|+.....+
T Consensus 82 ~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~ 161 (556)
T 4a2p_A 82 QGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFN 161 (556)
T ss_dssp GTCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSHHHHHHHHHHHHHHC
T ss_pred cCceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcchHHHHHHHHHHhhhc
Confidence 78899888888754432
Q ss_pred ---CCceEEEEeccCcH-----------HHHHHHHHhhccceEEEeccc-cc--ccCccceeEEEEc-------------
Q psy9620 230 ---PDRQVLMWSATWPR-----------EVQKLAEDFLDSYIQINIGSL-TL--SANHNIQQVVEVC------------- 279 (453)
Q Consensus 230 ---~~~q~v~~SAT~~~-----------~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~i~~~~~~~------------- 279 (453)
+..+++++|||++. .+..+...+....+....... .. .............
T Consensus 162 ~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (556)
T 4a2p_A 162 SASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISN 241 (556)
T ss_dssp C---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEECCCCSCCHHHHHHHH
T ss_pred ccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEEEEcCCCcCChHHHHHHH
Confidence 23689999999842 121222221111111000000 00 0000000000000
Q ss_pred --------------------------------------------------------------------------------
Q psy9620 280 -------------------------------------------------------------------------------- 279 (453)
Q Consensus 280 -------------------------------------------------------------------------------- 279 (453)
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 321 (556)
T 4a2p_A 242 LMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDA 321 (556)
T ss_dssp HHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence
Q ss_pred -----------------------------------------------cccchhhhHHHHHHhhh-cCCCCcEEEEEcchh
Q psy9620 280 -----------------------------------------------AEHEKENKLFGLLNDIS-SKDENKTIIFAETKR 311 (453)
Q Consensus 280 -----------------------------------------------~~~~k~~~l~~ll~~~~-~~~~~~~lVF~~s~~ 311 (453)
....|...|.++|.... .....++||||+++.
T Consensus 322 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~ 401 (556)
T 4a2p_A 322 RIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRA 401 (556)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCCEEEEESSHH
T ss_pred hHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCCceEEEEEccHH
Confidence 01224444555554332 134679999999999
Q ss_pred HHHHHHHHHHhc------------CCeEEEEcCCCCHHHHHHHHHHHhc-CCCcEEEEeccCccCCCCCCCcEEEEcCCC
Q psy9620 312 KVDKITKSIQNY------------GWAAVGIHGDKSQQERDYVLKEFRN-GRAGILVATDVAARGLDVDDVKFVINFDYP 378 (453)
Q Consensus 312 ~~~~l~~~L~~~------------~~~~~~~h~~~~~~~r~~~~~~f~~-g~~~vLvaT~~~~~GiDip~v~~VI~~d~p 378 (453)
.++.+++.|... |.....+|++|++.+|..++++|++ |+++|||||+++++|||+|+|++||+||+|
T Consensus 402 ~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p 481 (556)
T 4a2p_A 402 LVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYS 481 (556)
T ss_dssp HHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC-----------CEEEEETCC
T ss_pred HHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCchhCCEEEEeCCC
Confidence 999999999875 4556667888999999999999999 999999999999999999999999999999
Q ss_pred CChhHHHHhhhcccCCCCcceEEEEEcCCChH
Q psy9620 379 NNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSR 410 (453)
Q Consensus 379 ~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~ 410 (453)
.|+..|+||+|| ||. .+|.|++|+++.+..
T Consensus 482 ~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~ 511 (556)
T 4a2p_A 482 GNVTKMIQVRGR-GRA-AGSKCILVTSKTEVV 511 (556)
T ss_dssp SCHHHHHHC----------CCEEEEESCHHHH
T ss_pred CCHHHHHHhcCC-CCC-CCceEEEEEeCcchH
Confidence 999999999999 999 889999999987653
|
| >4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-38 Score=354.20 Aligned_cols=300 Identities=15% Similarity=0.182 Sum_probs=225.7
Q ss_pred CCccccccccC---CCHHHHHHHHHCCCCCCCHHHHHHHHHHhc-CCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCC
Q psy9620 109 PNPITEFAEAN---FPDYVLKEVKRQGFDRPTPIQAQGWPIAMS-GSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPG 184 (453)
Q Consensus 109 p~p~~~f~~~~---l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~-g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~ 184 (453)
+.++.++..++ |.+...+.+...+|..|+|+|.++++.++. ++|++++||||||||++|.+|++..+...
T Consensus 897 ~t~lldl~plp~s~L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~------ 970 (1724)
T 4f92_B 897 PTELLDLQPLPVSALRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQS------ 970 (1724)
T ss_dssp CCCCCCCCCCBGGGSCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHC------
T ss_pred CCccccCCCCCcccccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhC------
Confidence 34444554443 556777778778899999999999999974 67899999999999999999999988764
Q ss_pred CCcEEEEEcCCHHHHHHHHHHHHH-hcCCCCceEEEEeCCccCCCC----------------------------------
Q psy9620 185 DGPIVLVLAPTRELAQQIQEVARD-FGSSTYLRSTCVYGGASKGPQ---------------------------------- 229 (453)
Q Consensus 185 ~~~~vlil~Ptr~La~q~~~~~~~-~~~~~~~~~~~~~gg~~~~~~---------------------------------- 229 (453)
.+.++||++|+++||.|+++.+.+ ++...++++..++|+...+..
T Consensus 971 ~~~kavyi~P~raLa~q~~~~~~~~f~~~~g~~V~~ltGd~~~~~~~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lv 1050 (1724)
T 4f92_B 971 SEGRCVYITPMEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLF 1050 (1724)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHHHTTTSCCCEEECCSCHHHHHHHHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEE
T ss_pred CCCEEEEEcChHHHHHHHHHHHHHHhchhcCCEEEEEECCCCcchhhcCCCCEEEECHHHHHHHHhCcccccccceeeEE
Confidence 355799999999999999998875 566688999888887543211
Q ss_pred -------------------------------CCceEEEEeccCcHHHHHHHHHhhccceEEEecccccccCccceeEEEE
Q psy9620 230 -------------------------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEV 278 (453)
Q Consensus 230 -------------------------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 278 (453)
.+.|+|++|||++ +..++++|+..+...+...... ..+..+...+..
T Consensus 1051 ViDE~H~l~d~rg~~le~il~rl~~i~~~~~~~~riI~lSATl~-N~~dla~WL~~~~~~~~~~~~~-~RPvpL~~~i~~ 1128 (1724)
T 4f92_B 1051 VVDEVHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLS-NAKDVAHWLGCSATSTFNFHPN-VRPVPLELHIQG 1128 (1724)
T ss_dssp EECCGGGGGSTTHHHHHHHHHHHHHHHHTTSSCCEEEEEESCBT-THHHHHHHHTCCSTTEEECCGG-GCSSCEEEEEEE
T ss_pred EeechhhcCCCCCccHHHHHHHHHHHHhhcCCCceEEEEeCCCC-CHHHHHHHhCCCCCCeEEeCCC-CCCCCeEEEEEe
Confidence 4689999999996 4677888775443222211111 112233444443
Q ss_pred ccccchhhhHHHHHHh----h-hcCCCCcEEEEEcchhHHHHHHHHHHhc------------------------------
Q psy9620 279 CAEHEKENKLFGLLND----I-SSKDENKTIIFAETKRKVDKITKSIQNY------------------------------ 323 (453)
Q Consensus 279 ~~~~~k~~~l~~ll~~----~-~~~~~~~~lVF~~s~~~~~~l~~~L~~~------------------------------ 323 (453)
.........+..+... + ......++||||+|++.|+.++..|...
T Consensus 1129 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L 1208 (1724)
T 4f92_B 1129 FNISHTQTRLLSMAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTL 1208 (1724)
T ss_dssp ECCCSHHHHHHTTHHHHHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHH
T ss_pred ccCCCchhhhhhhcchHHHHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHH
Confidence 3333332222222111 1 1134679999999999999988876431
Q ss_pred ----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEEE----cC------CCCChhHHHHhhh
Q psy9620 324 ----GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVIN----FD------YPNNSEDYIHRIG 389 (453)
Q Consensus 324 ----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~----~d------~p~s~~~y~qr~G 389 (453)
...+.+||++|++.+|..+++.|++|.++|||||+++++|||+|++.+||. || .|.+..+|+||+|
T Consensus 1209 ~~~l~~GIa~hHagL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~G 1288 (1724)
T 4f92_B 1209 KETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVG 1288 (1724)
T ss_dssp HHHHHTTEEEECTTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHT
T ss_pred HHHHhCCEEEECCCCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhc
Confidence 235899999999999999999999999999999999999999999999993 32 3678999999999
Q ss_pred cccCCCC--cceEEEEEcCCChHHHHHHH
Q psy9620 390 RTGRSDN--TGTSYTFFTQQNSRQAKDLI 416 (453)
Q Consensus 390 RagR~g~--~g~~~~~~~~~~~~~~~~l~ 416 (453)
||||.|. .|.|++++.+.+...++.++
T Consensus 1289 RAGR~g~d~~G~avll~~~~~~~~~~~ll 1317 (1724)
T 4f92_B 1289 HANRPLQDDEGRCVIMCQGSKKDFFKKFL 1317 (1724)
T ss_dssp TBCCTTTCSCEEEEEEEEGGGHHHHHHHT
T ss_pred cccCCCCCCceEEEEEecchHHHHHHHHh
Confidence 9999986 69999999988877776654
|
| >3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-38 Score=322.01 Aligned_cols=274 Identities=24% Similarity=0.294 Sum_probs=183.8
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhcCCCC
Q psy9620 135 RPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGSSTY 214 (453)
Q Consensus 135 ~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~~~~~ 214 (453)
+|+|+|.++++.+++++|+++++|||+|||++|++|++..+...+. ..++++|||+||++|+.|+.+.+.+++...+
T Consensus 4 ~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~---~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 80 (555)
T 3tbk_A 4 KPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPC---GQKGKVVFFANQIPVYEQQATVFSRYFERLG 80 (555)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS---SCCCCEEEECSSHHHHHHHHHHHHHHHHTTT
T ss_pred CCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhccc---CCCCEEEEEeCCHHHHHHHHHHHHHHhccCC
Confidence 7999999999999999999999999999999999999988876432 2367799999999999999999999988788
Q ss_pred ceEEEEeCCccCCCC-----------------------------------------------------------------
Q psy9620 215 LRSTCVYGGASKGPQ----------------------------------------------------------------- 229 (453)
Q Consensus 215 ~~~~~~~gg~~~~~~----------------------------------------------------------------- 229 (453)
+++..++|+.....+
T Consensus 81 ~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~ 160 (555)
T 3tbk_A 81 YNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLGES 160 (555)
T ss_dssp CCEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHHHHTSSC
T ss_pred cEEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcchHHHHHHHHHHhhhccc
Confidence 999999998754432
Q ss_pred --CCceEEEEeccCcHH-----------HHHHHHHhhccceEEEecc---cccccCccceeEEEEc--------------
Q psy9620 230 --PDRQVLMWSATWPRE-----------VQKLAEDFLDSYIQINIGS---LTLSANHNIQQVVEVC-------------- 279 (453)
Q Consensus 230 --~~~q~v~~SAT~~~~-----------~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~-------------- 279 (453)
+..+++++|||++.. +..+...+....+...... ................
T Consensus 161 ~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (555)
T 3tbk_A 161 RDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTFKCIISQL 240 (555)
T ss_dssp CSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTCSEEECCCSCHHHHHTTCCCCCEEEEECCCCSCCHHHHHHHHH
T ss_pred cCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCCeeeeccccCHHHHHhhcCCCceEEEEecCcccChHHHHHHHH
Confidence 225899999998531 1112111110111100000 0000000000000000
Q ss_pred --------------------------------------------------------------------------------
Q psy9620 280 -------------------------------------------------------------------------------- 279 (453)
Q Consensus 280 -------------------------------------------------------------------------------- 279 (453)
T Consensus 241 ~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 320 (555)
T 3tbk_A 241 MKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYNDALIISEDA 320 (555)
T ss_dssp HHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence
Q ss_pred -----------------------------------------------cccchhhhHHHHHHhhhc-CCCCcEEEEEcchh
Q psy9620 280 -----------------------------------------------AEHEKENKLFGLLNDISS-KDENKTIIFAETKR 311 (453)
Q Consensus 280 -----------------------------------------------~~~~k~~~l~~ll~~~~~-~~~~~~lVF~~s~~ 311 (453)
....|...+.++|..... ....++||||+++.
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~ 400 (555)
T 3tbk_A 321 QMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFVKTRA 400 (555)
T ss_dssp CHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCTTCCEEEECSSHH
T ss_pred hHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCCCceEEEEeCcHH
Confidence 012344455555554322 34579999999999
Q ss_pred HHHHHHHHHHhcC------------CeEEEEcCCCCHHHHHHHHHHHhc-CCCcEEEEeccCccCCCCCCCcEEEEcCCC
Q psy9620 312 KVDKITKSIQNYG------------WAAVGIHGDKSQQERDYVLKEFRN-GRAGILVATDVAARGLDVDDVKFVINFDYP 378 (453)
Q Consensus 312 ~~~~l~~~L~~~~------------~~~~~~h~~~~~~~r~~~~~~f~~-g~~~vLvaT~~~~~GiDip~v~~VI~~d~p 378 (453)
.++.+++.|...+ .....+||+|++.+|..++++|++ |+++|||||+++++|||+|+|++||+||+|
T Consensus 401 ~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp~v~~VI~~d~p 480 (555)
T 3tbk_A 401 LVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLVILYEYV 480 (555)
T ss_dssp HHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCEETTSCSEEEEESCC
T ss_pred HHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCccccCCEEEEeCCC
Confidence 9999999999763 344556679999999999999999 999999999999999999999999999999
Q ss_pred CChhHHHHhhhcccCCCCcceEEEEEcCCChHHHH
Q psy9620 379 NNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAK 413 (453)
Q Consensus 379 ~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~ 413 (453)
.|+..|+||+|| ||. ..|.+++|+++.+.....
T Consensus 481 ~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~~~ 513 (555)
T 3tbk_A 481 GNVIKMIQTRGR-GRA-RDSKCFLLTSSADVIEKE 513 (555)
T ss_dssp SSCCCEECSSCC-CTT-TSCEEEEEESCHHHHHHH
T ss_pred CCHHHHHHhcCc-CcC-CCceEEEEEcCCCHHHHH
Confidence 999999999999 998 899999999987655443
|
| >1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-37 Score=321.28 Aligned_cols=313 Identities=17% Similarity=0.192 Sum_probs=224.3
Q ss_pred CccccCCCCCCcccCCCCHHHHHHHHHHcCCee-cccCCCccccccccCCCHHHHHHHH--------HCCCCCCCHHHHH
Q psy9620 72 PPFEKNFFHPSPSVLNRSPHEVQAFRDKHQMTL-KGNAPNPITEFAEANFPDYVLKEVK--------RQGFDRPTPIQAQ 142 (453)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~p~~~f~~~~l~~~l~~~l~--------~~g~~~~~~~Q~~ 142 (453)
.+..+.+....+....++.+++.....+....+ .|. + |++.+.+++. .+|| .|+++|..
T Consensus 23 ~~~~~~in~~~~~~~~lsd~el~~~t~~~~~~~~~g~------~-----ld~~l~ea~a~vrea~~r~lG~-~pt~VQ~~ 90 (844)
T 1tf5_A 23 EKIANDIDAIRGDYENLSDDALKHKTIEFKERLEKGA------T-----TDDLLVEAFAVVREASRRVTGM-FPFKVQLM 90 (844)
T ss_dssp HHHHHHHHHTTHHHHTCCHHHHHHHHHHHHHHHHTTC------C-----HHHHHHHHHHHHHHHHHHHHSC-CCCHHHHH
T ss_pred HHHHHHHHhhhHHHHhCCHHHHHHHHHHHHHHHhcCC------C-----hHHHHHHHHHHHHHHHHHHcCC-CCcHHHHH
Confidence 344444555566777888888766655433222 221 1 1222222222 4699 99999999
Q ss_pred HHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhcCCCCceEEEEeC
Q psy9620 143 GWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGSSTYLRSTCVYG 222 (453)
Q Consensus 143 ~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g 222 (453)
++|.+++|+ |+.++||+|||++|.+|++.... .++.|+||+||++||.|+++++..++...++++.+++|
T Consensus 91 ~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL--------~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~g 160 (844)
T 1tf5_A 91 GGVALHDGN--IAEMKTGEGKTLTSTLPVYLNAL--------TGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLN 160 (844)
T ss_dssp HHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHT--------TSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCT
T ss_pred hhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHH--------cCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeC
Confidence 999999999 99999999999999999985433 24569999999999999999999999888999999998
Q ss_pred CccCCCC-------------------------------------------------------------------------
Q psy9620 223 GASKGPQ------------------------------------------------------------------------- 229 (453)
Q Consensus 223 g~~~~~~------------------------------------------------------------------------- 229 (453)
|.+...+
T Consensus 161 g~~~~~r~~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tplIisg~~~~~~~~~~~i 240 (844)
T 1tf5_A 161 SMSKDEKREAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLIISGQAAKSTKLYVQA 240 (844)
T ss_dssp TSCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEEEEEEECCCHHHHHH
T ss_pred CCCHHHHHHhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccchhhcCCcccchhHHHHH
Confidence 8542111
Q ss_pred -------C----------CceEE-----------------EEeccCcHH---HHHH--HHHhhc---cceE-----EEec
Q psy9620 230 -------P----------DRQVL-----------------MWSATWPRE---VQKL--AEDFLD---SYIQ-----INIG 262 (453)
Q Consensus 230 -------~----------~~q~v-----------------~~SAT~~~~---~~~~--~~~~~~---~~~~-----~~~~ 262 (453)
+ .+|++ +||||++.. +... +..++. +++. +.++
T Consensus 241 ~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYiv~dg~v~ivD 320 (844)
T 1tf5_A 241 NAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKDVDYVVEDGQVVIVD 320 (844)
T ss_dssp HHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCCBTTTEEEETTEEEEBC
T ss_pred HHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhhcCCceEEecCeeEEee
Confidence 1 35565 889997643 3222 222221 1211 0010
Q ss_pred ccc----------------------c-------------------------------------------------ccCcc
Q psy9620 263 SLT----------------------L-------------------------------------------------SANHN 271 (453)
Q Consensus 263 ~~~----------------------~-------------------------------------------------~~~~~ 271 (453)
... . +.+..
T Consensus 321 e~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~~~iY~l~vv~IPtn~p 400 (844)
T 1tf5_A 321 SFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNIYNMQVVTIPTNRP 400 (844)
T ss_dssp TTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHHHHHHCCCEEECCCSSC
T ss_pred cccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHHHHHHhCCceEEecCCCC
Confidence 000 0 00000
Q ss_pred ce----eEEEEccccchhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHh
Q psy9620 272 IQ----QVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFR 347 (453)
Q Consensus 272 i~----~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~ 347 (453)
+. +.+.+....+|...+...+.... ....++||||+|+..++.|+..|...++++..+|+++.+.+|..+.+.|+
T Consensus 401 ~~r~d~~d~v~~~~~~K~~al~~~i~~~~-~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~rEr~ii~~ag~ 479 (844)
T 1tf5_A 401 VVRDDRPDLIYRTMEGKFKAVAEDVAQRY-MTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQIIEEAGQ 479 (844)
T ss_dssp CCCEECCCEEESSHHHHHHHHHHHHHHHH-HHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHHHHHHTTTTS
T ss_pred cccccCCcEEEeCHHHHHHHHHHHHHHHH-hcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccHHHHHHHHHcCC
Confidence 00 11233344556666666665432 23568999999999999999999999999999999998888877766666
Q ss_pred cCCCcEEEEeccCccCCCCC--------CCcEEEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcCCCh
Q psy9620 348 NGRAGILVATDVAARGLDVD--------DVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNS 409 (453)
Q Consensus 348 ~g~~~vLvaT~~~~~GiDip--------~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~ 409 (453)
.| .|+||||+++||+||+ ++.+||+|++|.|...|+||+|||||+|.+|.+++|++.+|.
T Consensus 480 ~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s~~~vs~eD~ 547 (844)
T 1tf5_A 480 KG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMEDE 547 (844)
T ss_dssp TT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSS
T ss_pred CC--eEEEeCCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeEEEEecHHHH
Confidence 55 6999999999999999 788999999999999999999999999999999999998763
|
| >2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-36 Score=324.79 Aligned_cols=269 Identities=19% Similarity=0.241 Sum_probs=205.4
Q ss_pred HCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHh
Q psy9620 130 RQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDF 209 (453)
Q Consensus 130 ~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~ 209 (453)
.++| .|+++|.++++.+++++++++++|||+|||++|+++++..+. .+.++||++||++|+.|+++.+.++
T Consensus 82 ~~~f-~L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~--------~g~rvL~l~PtkaLa~Q~~~~l~~~ 152 (1010)
T 2xgj_A 82 TYPF-TLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK--------NKQRVIYTSPIKALSNQKYRELLAE 152 (1010)
T ss_dssp CCSS-CCCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHH--------TTCEEEEEESSHHHHHHHHHHHHHH
T ss_pred hCCC-CCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhc--------cCCeEEEECChHHHHHHHHHHHHHH
Confidence 4467 599999999999999999999999999999999999988764 3568999999999999999999987
Q ss_pred cCCCCceEEEEeCCccCCCC-----------------------------------------------------CCceEEE
Q psy9620 210 GSSTYLRSTCVYGGASKGPQ-----------------------------------------------------PDRQVLM 236 (453)
Q Consensus 210 ~~~~~~~~~~~~gg~~~~~~-----------------------------------------------------~~~q~v~ 236 (453)
+. ++..++|+...... ...|+|+
T Consensus 153 ~~----~vglltGd~~~~~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l~~~~~il~ 228 (1010)
T 2xgj_A 153 FG----DVGLMTGDITINPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKVRYVF 228 (1010)
T ss_dssp HS----CEEEECSSCEECTTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHSCTTCEEEE
T ss_pred hC----CEEEEeCCCccCCCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccchhHHHHHHHHhcCCCCeEEE
Confidence 64 56666666554332 4689999
Q ss_pred EeccCcHHHHHHHHHh---hccceEEEecccccccCccceeEEEEc---------cccc---------------------
Q psy9620 237 WSATWPREVQKLAEDF---LDSYIQINIGSLTLSANHNIQQVVEVC---------AEHE--------------------- 283 (453)
Q Consensus 237 ~SAT~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~~~---------~~~~--------------------- 283 (453)
+|||++.. .+++.++ ...+..+...... ...+.+.+... ....
T Consensus 229 LSATi~n~-~e~a~~l~~~~~~~~~vi~~~~r---p~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 304 (1010)
T 2xgj_A 229 LSATIPNA-MEFAEWICKIHSQPCHIVYTNFR---PTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDD 304 (1010)
T ss_dssp EECCCTTH-HHHHHHHHHHHTSCEEEEEECCC---SSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC------
T ss_pred EcCCCCCH-HHHHHHHHhhcCCCeEEEecCCC---cccceEEEEecCCcceeeeeccccccchHHHHHHHHHHhhhhccc
Confidence 99999764 3344433 3334443332211 11122222110 0000
Q ss_pred --------------h--------hhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCC----------------
Q psy9620 284 --------------K--------ENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGW---------------- 325 (453)
Q Consensus 284 --------------k--------~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~---------------- 325 (453)
+ ...+..++..+......++||||+++..|+.++..|...++
T Consensus 305 ~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~ 384 (1010)
T 2xgj_A 305 PNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNA 384 (1010)
T ss_dssp ------------------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHH
Confidence 0 23344455555444456999999999999999999876433
Q ss_pred -----------------------eEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEEE----cCC-
Q psy9620 326 -----------------------AAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVIN----FDY- 377 (453)
Q Consensus 326 -----------------------~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~----~d~- 377 (453)
.+..+||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+ ||.
T Consensus 385 ~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI~~~~kfd~~ 464 (1010)
T 2xgj_A 385 IALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQ 464 (1010)
T ss_dssp HTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEESCSEEECSS
T ss_pred HHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEEEeCCcccCCc
Confidence 2889999999999999999999999999999999999999999999999 998
Q ss_pred ---CCChhHHHHhhhcccCCCC--cceEEEEEcCC-ChHHHHHH
Q psy9620 378 ---PNNSEDYIHRIGRTGRSDN--TGTSYTFFTQQ-NSRQAKDL 415 (453)
Q Consensus 378 ---p~s~~~y~qr~GRagR~g~--~g~~~~~~~~~-~~~~~~~l 415 (453)
|.+..+|+||+|||||.|. .|.|++++++. +...++++
T Consensus 465 ~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~~~~~~l 508 (1010)
T 2xgj_A 465 QFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGM 508 (1010)
T ss_dssp CEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCHHHHHHH
T ss_pred CCccCCHHHHhHhhhhcccCCCCCceEEEEEECCCCCHHHHHHH
Confidence 8899999999999999986 59999999876 44444443
|
| >1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-37 Score=337.51 Aligned_cols=267 Identities=21% Similarity=0.279 Sum_probs=213.3
Q ss_pred HCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHh
Q psy9620 130 RQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDF 209 (453)
Q Consensus 130 ~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~ 209 (453)
.+||. | ++|.++|+.+++++|++++||||||||+ |.+|++..+.. .++++|||+||++||.|+++.++++
T Consensus 53 ~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~-------~~~~~lil~PtreLa~Q~~~~l~~l 122 (1054)
T 1gku_B 53 CVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLAL-------KGKRCYVIFPTSLLVIQAAETIRKY 122 (1054)
T ss_dssp TTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHT-------TSCCEEEEESCHHHHHHHHHHHHHH
T ss_pred hcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhh-------cCCeEEEEeccHHHHHHHHHHHHHH
Confidence 46998 9 9999999999999999999999999998 99999887754 3678999999999999999999999
Q ss_pred cCCCCc----eEEEEeCCccCCC-----------C---------------------------------------------
Q psy9620 210 GSSTYL----RSTCVYGGASKGP-----------Q--------------------------------------------- 229 (453)
Q Consensus 210 ~~~~~~----~~~~~~gg~~~~~-----------~--------------------------------------------- 229 (453)
+...++ ++.+++|+.+... +
T Consensus 123 ~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~~~IlV~TP~~L~~~l~~L~~l~~lViDEah~~l~~~~~~~~i~~~lg 202 (1054)
T 1gku_B 123 AEKAGVGTENLIGYYHGRIPKREKENFMQNLRNFKIVITTTQFLSKHYRELGHFDFIFVDDVDAILKASKNVDKLLHLLG 202 (1054)
T ss_dssp HTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGGCSEEEEEHHHHHHCSTTSCCCSEEEESCHHHHHTSTHHHHHHHHHTT
T ss_pred HhhcCCCccceEEEEeCCCChhhHHHHHhhccCCCEEEEcHHHHHHHHHHhccCCEEEEeChhhhhhccccHHHHHHHhC
Confidence 988888 8888888765432 1
Q ss_pred -----------CCceEEEEeccCcHHHHHHHHHhhccceEEEecccccccCccceeEEEEccccchhhhHHHHHHhhhcC
Q psy9620 230 -----------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSK 298 (453)
Q Consensus 230 -----------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~ 298 (453)
...|++++|||++.. ..++..++.++..+.+.... .....+.+.+. ..++...+..++...
T Consensus 203 f~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~~~~-~~~~~i~~~~~---~~~k~~~L~~ll~~~--- 274 (1054)
T 1gku_B 203 FHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDIGSSR-ITVRNVEDVAV---NDESISTLSSILEKL--- 274 (1054)
T ss_dssp EEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCSCCE-ECCCCEEEEEE---SCCCTTTTHHHHTTS---
T ss_pred cchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEccCcc-cCcCCceEEEe---chhHHHHHHHHHhhc---
Confidence 135789999999877 54444555444333333222 12233444333 355666666666543
Q ss_pred CCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEE----eccCccCCCCCCC-cEEE
Q psy9620 299 DENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVA----TDVAARGLDVDDV-KFVI 373 (453)
Q Consensus 299 ~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLva----T~~~~~GiDip~v-~~VI 373 (453)
..++||||+++..|+.+++.|... +.+..+|+++ ..++++|++|+.+|||| |+++++|||+|+| ++||
T Consensus 275 -~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~-----~~~l~~F~~G~~~VLVaTas~Tdv~~rGIDip~VI~~VI 347 (1054)
T 1gku_B 275 -GTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATK-----KGDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAV 347 (1054)
T ss_dssp -CSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSS-----SHHHHHHHHTSCSEEEEECC------CCSCCTTTCCEEE
T ss_pred -CCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccH-----HHHHHHHHcCCCcEEEEecCCCCeeEeccccCCcccEEE
Confidence 568999999999999999999988 9999999998 47899999999999999 8999999999996 9999
Q ss_pred EcCCC-----------------------------------------------------------------------CChh
Q psy9620 374 NFDYP-----------------------------------------------------------------------NNSE 382 (453)
Q Consensus 374 ~~d~p-----------------------------------------------------------------------~s~~ 382 (453)
++|+| .+..
T Consensus 348 ~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 427 (1054)
T 1gku_B 348 FVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKDVVVREGEVIFPDLR 427 (1054)
T ss_dssp EESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCSCSSSEEETTEEEEECHH
T ss_pred EeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccceeEeecceecCcHH
Confidence 99999 7899
Q ss_pred HHHHhhhcccCCCCcc--eEEEEEcCCChHHHHHHHHHHHh
Q psy9620 383 DYIHRIGRTGRSDNTG--TSYTFFTQQNSRQAKDLIDVLTE 421 (453)
Q Consensus 383 ~y~qr~GRagR~g~~g--~~~~~~~~~~~~~~~~l~~~l~~ 421 (453)
+|+||+|||||.|..| .+++|+..++...+..+.+.++.
T Consensus 428 ~yiQr~GRagR~g~~g~~~g~~~~~~~d~~~~~~l~~~l~~ 468 (1054)
T 1gku_B 428 TYIQGSGRTSRLFAGGLTKGASFLLEDDSELLSAFIERAKL 468 (1054)
T ss_dssp HHHHHHHTTCCEETTEECCEEEEEECSCHHHHHHHHHHHHT
T ss_pred HHhhhhchhhhccCCCCceEEEEEEecCHHHHHHHHHHHhh
Confidence 9999999999987765 48888888898888888888874
|
| >4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-37 Score=327.17 Aligned_cols=275 Identities=21% Similarity=0.237 Sum_probs=164.1
Q ss_pred CCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhc
Q psy9620 131 QGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFG 210 (453)
Q Consensus 131 ~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~ 210 (453)
+|+..|+|+|.++++.+++++|+|+++|||+|||++|++|++..+...+. ..++++|||+||++|+.|+.+.+++++
T Consensus 244 ~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~---~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~ 320 (797)
T 4a2q_A 244 YETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPA---GRKAKVVFLATKVPVYEQQKNVFKHHF 320 (797)
T ss_dssp ----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS---SCCCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccc---cCCCeEEEEeCCHHHHHHHHHHHHHhc
Confidence 47889999999999999999999999999999999999999988876422 236779999999999999999999998
Q ss_pred CCCCceEEEEeCCccCCCC-------------------------------------------------------------
Q psy9620 211 SSTYLRSTCVYGGASKGPQ------------------------------------------------------------- 229 (453)
Q Consensus 211 ~~~~~~~~~~~gg~~~~~~------------------------------------------------------------- 229 (453)
...++++..++|+.....+
T Consensus 321 ~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~~~~i~~~~~~~~ 400 (797)
T 4a2q_A 321 ERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQK 400 (797)
T ss_dssp GGGTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSHHHHHHHHHHHHH
T ss_pred ccCCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCccHHHHHHHHHHHh
Confidence 7778999999988754432
Q ss_pred -----CCceEEEEeccCcH-----------HHHHHHHHhhccceEEEecc---cccccCccceeEEEEc-----------
Q psy9620 230 -----PDRQVLMWSATWPR-----------EVQKLAEDFLDSYIQINIGS---LTLSANHNIQQVVEVC----------- 279 (453)
Q Consensus 230 -----~~~q~v~~SAT~~~-----------~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~----------- 279 (453)
+..+++++|||+.. .+..+...+....+...... ................
T Consensus 401 ~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (797)
T 4a2q_A 401 FNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAII 480 (797)
T ss_dssp HTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCCCSCCHHHHHH
T ss_pred hccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEEEecCCCCCcHHHHHH
Confidence 23679999999852 22222221111111100000 0000000000000000
Q ss_pred --------------------------------------------------------------------------------
Q psy9620 280 -------------------------------------------------------------------------------- 279 (453)
Q Consensus 280 -------------------------------------------------------------------------------- 279 (453)
T Consensus 481 ~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~ 560 (797)
T 4a2q_A 481 SNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISE 560 (797)
T ss_dssp HHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence
Q ss_pred -------------------------------------------------cccchhhhHHHHHHhh-hcCCCCcEEEEEcc
Q psy9620 280 -------------------------------------------------AEHEKENKLFGLLNDI-SSKDENKTIIFAET 309 (453)
Q Consensus 280 -------------------------------------------------~~~~k~~~l~~ll~~~-~~~~~~~~lVF~~s 309 (453)
....|...|..+|... ......++||||++
T Consensus 561 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvLIF~~~ 640 (797)
T 4a2q_A 561 DARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKT 640 (797)
T ss_dssp HSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSCCEEEEESS
T ss_pred cccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCCCeEEEEECc
Confidence 0122334444444432 22446799999999
Q ss_pred hhHHHHHHHHHHhc------------CCeEEEEcCCCCHHHHHHHHHHHhc-CCCcEEEEeccCccCCCCCCCcEEEEcC
Q psy9620 310 KRKVDKITKSIQNY------------GWAAVGIHGDKSQQERDYVLKEFRN-GRAGILVATDVAARGLDVDDVKFVINFD 376 (453)
Q Consensus 310 ~~~~~~l~~~L~~~------------~~~~~~~h~~~~~~~r~~~~~~f~~-g~~~vLvaT~~~~~GiDip~v~~VI~~d 376 (453)
+..++.+++.|... |..+..+|++|++.+|..++++|++ |+++|||||+++++|||+|+|++||+||
T Consensus 641 ~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp~v~~VI~yd 720 (797)
T 4a2q_A 641 RALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYE 720 (797)
T ss_dssp HHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC-------CCCSEEEEES
T ss_pred HHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCCCchhCCEEEEeC
Confidence 99999999999873 5566778999999999999999999 9999999999999999999999999999
Q ss_pred CCCChhHHHHhhhcccCCCCcceEEEEEcCCChH
Q psy9620 377 YPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSR 410 (453)
Q Consensus 377 ~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~ 410 (453)
+|.|+..|+||+|| ||. .+|.|++|+++.+..
T Consensus 721 ~p~s~~~~iQr~GR-GR~-~~g~~i~l~~~~~~e 752 (797)
T 4a2q_A 721 YSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVV 752 (797)
T ss_dssp CCSCHHHHHTC---------CCCEEEEECCHHHH
T ss_pred CCCCHHHHHHhcCC-CCC-CCceEEEEEeCCcHH
Confidence 99999999999999 999 899999999886543
|
| >1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-37 Score=325.71 Aligned_cols=286 Identities=19% Similarity=0.212 Sum_probs=214.9
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHhcC------CcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCC
Q psy9620 122 DYVLKEVKRQGFDRPTPIQAQGWPIAMSG------SNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPT 195 (453)
Q Consensus 122 ~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g------~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt 195 (453)
+.+.+.++.++| .||++|.++++.++++ .+++++++||||||++|++|++..+.. +.++||++||
T Consensus 356 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~--------g~qvlvlaPt 426 (780)
T 1gm5_A 356 KLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA--------GFQTAFMVPT 426 (780)
T ss_dssp HHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH--------TSCEEEECSC
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc--------CCeEEEEeCc
Confidence 345555677899 9999999999998865 599999999999999999999988753 4569999999
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEEEeCCccCCC-------------C---------------------------------
Q psy9620 196 RELAQQIQEVARDFGSSTYLRSTCVYGGASKGP-------------Q--------------------------------- 229 (453)
Q Consensus 196 r~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~-------------~--------------------------------- 229 (453)
++||.|+++.+.+++...++++..++|+..... .
T Consensus 427 r~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l~lVVIDEaHr~g~~q 506 (780)
T 1gm5_A 427 SILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVIIDEQHRFGVKQ 506 (780)
T ss_dssp HHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCEEEEESCCCC----
T ss_pred HHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCCceEEecccchhhHHH
Confidence 999999999999998888899999888764311 0
Q ss_pred --------CCceEEEEeccCcHHHHHHHHHhhccceEEEecccccccCccceeEEEEccccchhhhHHHHHHhhhcCCCC
Q psy9620 230 --------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDEN 301 (453)
Q Consensus 230 --------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~ 301 (453)
...++++||||+.+....+. +..+.....+.... .....+. .......+...+...+.... ....
T Consensus 507 r~~l~~~~~~~~vL~mSATp~p~tl~~~--~~g~~~~s~i~~~p-~~r~~i~---~~~~~~~~~~~l~~~i~~~l-~~g~ 579 (780)
T 1gm5_A 507 REALMNKGKMVDTLVMSATPIPRSMALA--FYGDLDVTVIDEMP-PGRKEVQ---TMLVPMDRVNEVYEFVRQEV-MRGG 579 (780)
T ss_dssp -CCCCSSSSCCCEEEEESSCCCHHHHHH--HTCCSSCEEECCCC-SSCCCCE---ECCCCSSTHHHHHHHHHHHT-TTSC
T ss_pred HHHHHHhCCCCCEEEEeCCCCHHHHHHH--HhCCcceeeeeccC-CCCcceE---EEEeccchHHHHHHHHHHHH-hcCC
Confidence 45899999999866544332 22222111111111 1111222 11222233444555554432 2356
Q ss_pred cEEEEEcch--------hHHHHHHHHHHh---cCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCc
Q psy9620 302 KTIIFAETK--------RKVDKITKSIQN---YGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVK 370 (453)
Q Consensus 302 ~~lVF~~s~--------~~~~~l~~~L~~---~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~ 370 (453)
+++|||++. ..++.+++.|.. .++.+..+||+|++.+|+.++++|++|+++|||||+++++|||+|+++
T Consensus 580 qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie~GIDiP~v~ 659 (780)
T 1gm5_A 580 QAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRAN 659 (780)
T ss_dssp CBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSCCTTCC
T ss_pred cEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCCccccCCCCC
Confidence 899999965 457888888887 467899999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCC-ChhHHHHhhhcccCCCCcceEEEEEcCCChHHHHHHHHHHHhcCC
Q psy9620 371 FVINFDYPN-NSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDLIDVLTESNH 424 (453)
Q Consensus 371 ~VI~~d~p~-s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~ 424 (453)
+||++|.|. +.+.|+||+||+||.|.+|.|++++++.+ ....+.++.+++...
T Consensus 660 ~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill~~~~~-~~~~~rl~~l~~~~d 713 (780)
T 1gm5_A 660 VMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGDVG-EEAMERLRFFTLNTD 713 (780)
T ss_dssp EEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCSCC-HHHHHHHHHHHTCCC
T ss_pred EEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEEECCCC-hHHHHHHHHHHhhhc
Confidence 999999996 78999999999999999999999988443 334444555655443
|
| >2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-37 Score=320.92 Aligned_cols=276 Identities=16% Similarity=0.136 Sum_probs=199.3
Q ss_pred cCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHH
Q psy9620 118 ANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRE 197 (453)
Q Consensus 118 ~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~ 197 (453)
+++++.+.+.+... ...++|+|+.+++.+++++|+|++||||||||++|++|++..+.. .++++|||+||++
T Consensus 155 l~~~~~~~~~l~~~-~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~-------~~~~vLvl~Ptre 226 (618)
T 2whx_A 155 VTKSGDYVSAITQA-ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALK-------RRLRTLILAPTRV 226 (618)
T ss_dssp -------CEECBCC-CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHH-------TTCCEEEEESSHH
T ss_pred ccchHHHHHHHhhc-cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHh-------CCCeEEEEcChHH
Confidence 34555555544433 478999999899999999999999999999999999999988765 3567999999999
Q ss_pred HHHHHHHHHHHhcCCC-----------CceEEEEeCCcc---------CCC-C---------------------------
Q psy9620 198 LAQQIQEVARDFGSST-----------YLRSTCVYGGAS---------KGP-Q--------------------------- 229 (453)
Q Consensus 198 La~q~~~~~~~~~~~~-----------~~~~~~~~gg~~---------~~~-~--------------------------- 229 (453)
||.|+.+.+..+.-.. +-.+..+..+.. ... .
T Consensus 227 La~Qi~~~l~~~~v~~~~~~l~~~~tp~~~i~~~t~~~l~~~l~~~~~l~~~~~iViDEah~~~~~~~~~~~~i~~~l~~ 306 (618)
T 2whx_A 227 VAAEMEEALRGLPIRYQTPAVKSDHTGREIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFTDPCSVAARGYISTRVEM 306 (618)
T ss_dssp HHHHHHHHTTTSCEEECCTTSSCCCCSSSCEEEEEHHHHHHHHHHCSSCCCCSEEEEESTTCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCceeEecccceeccCCCceEEEEChHHHHHHHhccccccCCeEEEEECCCCCCccHHHHHHHHHHHhcc
Confidence 9999998875321000 000000000000 000 0
Q ss_pred CCceEEEEeccCcHHHHHHHHHhhccceEEEecccccccCccceeEEEEccccchhhhHHHHHHhhhcCCCCcEEEEEcc
Q psy9620 230 PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAET 309 (453)
Q Consensus 230 ~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~lVF~~s 309 (453)
.++|+++||||++..+..++. .++..+.+... .+. .+...++..+.. ...++||||++
T Consensus 307 ~~~q~il~SAT~~~~~~~~~~---~~~~~~~v~~~--------------~~~-~~~~~ll~~l~~----~~~~~LVF~~s 364 (618)
T 2whx_A 307 GEAAAIFMTATPPGSTDPFPQ---SNSPIEDIERE--------------IPE-RSWNTGFDWITD----YQGKTVWFVPS 364 (618)
T ss_dssp TSCEEEEECSSCTTCCCSSCC---CSSCEEEEECC--------------CCS-SCCSSSCHHHHH----CCSCEEEECSS
T ss_pred cCccEEEEECCCchhhhhhhc---cCCceeeeccc--------------CCH-HHHHHHHHHHHh----CCCCEEEEECC
Confidence 578999999999876432211 12222222110 000 111222233322 35699999999
Q ss_pred hhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEE-----------------
Q psy9620 310 KRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFV----------------- 372 (453)
Q Consensus 310 ~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~V----------------- 372 (453)
++.|+.+++.|...++.+..+|+. +|..+++.|++|+.+|||||+++++|||+| +++|
T Consensus 365 ~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~~~P~~~~~~~~ 439 (618)
T 2whx_A 365 IKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRRCLKPVILTDGPE 439 (618)
T ss_dssp HHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCEEEEEEEECSSSC
T ss_pred hhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECcceecceecccCCC
Confidence 999999999999999999999984 788899999999999999999999999997 9888
Q ss_pred ---EEcCCCCChhHHHHhhhcccCCCC-cceEEEEEc---CCChHHHHHHHHHHHhcCCCCCh
Q psy9620 373 ---INFDYPNNSEDYIHRIGRTGRSDN-TGTSYTFFT---QQNSRQAKDLIDVLTESNHPVDP 428 (453)
Q Consensus 373 ---I~~d~p~s~~~y~qr~GRagR~g~-~g~~~~~~~---~~~~~~~~~l~~~l~~~~~~v~~ 428 (453)
|+||.|.+.++|+||+||+||.|. +|.|++|++ +.+...++.+...+...+.++++
T Consensus 440 ~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d~~~l~~le~~i~l~~~~~~~ 502 (618)
T 2whx_A 440 RVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEAKMLLDNIYTPE 502 (618)
T ss_dssp EEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHHHHHHTTCCCTT
T ss_pred ceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEccCCchhhHHHHHHHHhHhccccccCCc
Confidence 788889999999999999999964 899999998 77777778777777766666654
|
| >4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-36 Score=341.72 Aligned_cols=282 Identities=18% Similarity=0.247 Sum_probs=215.6
Q ss_pred CCCCCCHHHHHHHHHHh-cCCcEEEEecCCCcchhhhhHHHHHHhhhcCCC---CCCCCcEEEEEcCCHHHHHHHHHHHH
Q psy9620 132 GFDRPTPIQAQGWPIAM-SGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQL---KPGDGPIVLVLAPTRELAQQIQEVAR 207 (453)
Q Consensus 132 g~~~~~~~Q~~~i~~i~-~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~---~~~~~~~vlil~Ptr~La~q~~~~~~ 207 (453)
||++|+++|++++|.++ +++|+|++||||||||++|++|++..+...... ....+.++||++|+++||.|+++.+.
T Consensus 76 g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~ 155 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFG 155 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHH
Confidence 79999999999999887 588999999999999999999999998764322 22357789999999999999999999
Q ss_pred HhcCCCCceEEEEeCCccCCCC----------------------------------------------------------
Q psy9620 208 DFGSSTYLRSTCVYGGASKGPQ---------------------------------------------------------- 229 (453)
Q Consensus 208 ~~~~~~~~~~~~~~gg~~~~~~---------------------------------------------------------- 229 (453)
+.....++++..++|+......
T Consensus 156 ~~~~~~gi~V~~~tGd~~~~~~~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d~RG~~lE~~l~rl~ 235 (1724)
T 4f92_B 156 KRLATYGITVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHDDRGPVLEALVARAI 235 (1724)
T ss_dssp HHHTTTTCCEEECCSSCSSCCTTGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGSTTHHHHHHHHHHHH
T ss_pred HHHhhCCCEEEEEECCCCCCccccCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCCccHHHHHHHHHHHH
Confidence 9888899999999998765432
Q ss_pred -------CCceEEEEeccCcHHHHHHHHHhhccce--EEEecccccccCccceeEEEEccccchh---hhHHHHHHh-hh
Q psy9620 230 -------PDRQVLMWSATWPREVQKLAEDFLDSYI--QINIGSLTLSANHNIQQVVEVCAEHEKE---NKLFGLLND-IS 296 (453)
Q Consensus 230 -------~~~q~v~~SAT~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~k~---~~l~~ll~~-~~ 296 (453)
.+.|+|++|||+| +..++++++..++. ...+... ..+..+.+.+......... ..+..++.. +.
T Consensus 236 ~~~~~~~~~~riI~LSATl~-N~~dvA~wL~~~~~~~~~~~~~~--~RPvpL~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 312 (1724)
T 4f92_B 236 RNIEMTQEDVRLIGLSATLP-NYEDVATFLRVDPAKGLFYFDNS--FRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIM 312 (1724)
T ss_dssp HHHHHHTCCCEEEEEECSCT-THHHHHHHTTCCHHHHEEECCGG--GCSSCEEEECCEECCCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHhCCCCCcEEEEecccC-CHHHHHHHhCCCCCCCeEEECCC--CccCccEEEEeccCCcchhhhhHHHHHHHHHHHH
Confidence 4679999999996 46677776644321 1111111 1122233333222222111 111122211 11
Q ss_pred -cCCCCcEEEEEcchhHHHHHHHHHHhc-------------------------------------CCeEEEEcCCCCHHH
Q psy9620 297 -SKDENKTIIFAETKRKVDKITKSIQNY-------------------------------------GWAAVGIHGDKSQQE 338 (453)
Q Consensus 297 -~~~~~~~lVF~~s~~~~~~l~~~L~~~-------------------------------------~~~~~~~h~~~~~~~ 338 (453)
....+++||||+|++.|+.+++.|.+. ...+.+||++|++.+
T Consensus 313 ~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~ 392 (1724)
T 4f92_B 313 EHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVD 392 (1724)
T ss_dssp TCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHH
T ss_pred HHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCCHHH
Confidence 123568999999999999999888641 234889999999999
Q ss_pred HHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEEE----cC------CCCChhHHHHhhhcccCCCC--cceEEEEEcC
Q psy9620 339 RDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVIN----FD------YPNNSEDYIHRIGRTGRSDN--TGTSYTFFTQ 406 (453)
Q Consensus 339 r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~----~d------~p~s~~~y~qr~GRagR~g~--~g~~~~~~~~ 406 (453)
|..+++.|++|.++|||||+++++|||+|++++||. || .|.+..+|+||+|||||.|. .|.++++.++
T Consensus 393 R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~~~ 472 (1724)
T 4f92_B 393 RTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSH 472 (1724)
T ss_dssp HHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEEEEEES
T ss_pred HHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccEEEEEecc
Confidence 999999999999999999999999999999999995 44 35689999999999999864 6999999998
Q ss_pred CChHHHHHHH
Q psy9620 407 QNSRQAKDLI 416 (453)
Q Consensus 407 ~~~~~~~~l~ 416 (453)
.+...+..++
T Consensus 473 ~~~~~~~~ll 482 (1724)
T 4f92_B 473 GELQYYLSLL 482 (1724)
T ss_dssp TTCCHHHHHT
T ss_pred hhHHHHHHHH
Confidence 8877766654
|
| >4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-35 Score=323.65 Aligned_cols=263 Identities=24% Similarity=0.318 Sum_probs=207.9
Q ss_pred HCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHh
Q psy9620 130 RQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDF 209 (453)
Q Consensus 130 ~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~ 209 (453)
..|| +|+|+|.++++.+++++|++++||||||||++|+++++..+. .++++|||+||++||.|+++.++++
T Consensus 74 ~~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~--------~~~~~Lil~PtreLa~Q~~~~l~~l 144 (1104)
T 4ddu_A 74 KFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLAR--------KGKKSALVFPTVTLVKQTLERLQKL 144 (1104)
T ss_dssp HSSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHT--------TTCCEEEEESSHHHHHHHHHHHHTT
T ss_pred hcCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHh--------cCCeEEEEechHHHHHHHHHHHHHh
Confidence 3588 799999999999999999999999999999988888877662 4678999999999999999999998
Q ss_pred cCCCCceEEEEeCCccCC-------------CC-----------------------------------------------
Q psy9620 210 GSSTYLRSTCVYGGASKG-------------PQ----------------------------------------------- 229 (453)
Q Consensus 210 ~~~~~~~~~~~~gg~~~~-------------~~----------------------------------------------- 229 (453)
+ ..++++..++|+.+.. .+
T Consensus 145 ~-~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~~g 223 (1104)
T 4ddu_A 145 A-DEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDFVFVDDVDAVLKASRNIDTLLMMVG 223 (1104)
T ss_dssp S-CTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHHHHTSCCSEEEESCHHHHTTSSHHHHHHHHTSS
T ss_pred h-CCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHhhcccCcCEEEEeCCCccccccccchhhhHhcC
Confidence 7 7788999999887651 11
Q ss_pred -------------------------CCceEEEEecc-CcHHHHH-HHHHhhccceEEEecccccccCccceeEEEEcccc
Q psy9620 230 -------------------------PDRQVLMWSAT-WPREVQK-LAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEH 282 (453)
Q Consensus 230 -------------------------~~~q~v~~SAT-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 282 (453)
...|+++|||| .|..+.. +...++. +.+.... ....++.+.+..+
T Consensus 224 f~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~----i~v~~~~-~~~~~i~~~~~~~--- 295 (1104)
T 4ddu_A 224 IPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLV-SVARNITHVRISS--- 295 (1104)
T ss_dssp CCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC----CCCCBCC-CCCCCEEEEEESC---
T ss_pred CCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee----EEeccCC-CCcCCceeEEEec---
Confidence 12589999999 5655442 2233322 2222221 2234455555433
Q ss_pred chhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEE-EEcCCCCHHHHHHHHHHHhcCCCcEEEE----e
Q psy9620 283 EKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAV-GIHGDKSQQERDYVLKEFRNGRAGILVA----T 357 (453)
Q Consensus 283 ~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~-~~h~~~~~~~r~~~~~~f~~g~~~vLva----T 357 (453)
++...|..++... ..++||||+++..|+.++..|...++.+. .+|| +|.+ +++|++|+.+|||| |
T Consensus 296 ~k~~~L~~ll~~~----~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg-----~rr~-l~~F~~G~~~VLVatas~T 365 (1104)
T 4ddu_A 296 RSKEKLVELLEIF----RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSE-----FEKN-FEDFKVGKINILIGVQAYY 365 (1104)
T ss_dssp CCHHHHHHHHHHH----CSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSS-----HHHH-HHHHHHTSCSEEEEETTTH
T ss_pred CHHHHHHHHHHhc----CCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecC-----cHHH-HHHHHCCCCCEEEEecCCC
Confidence 4666777777663 47999999999999999999999999998 9999 2555 99999999999999 9
Q ss_pred ccCccCCCCCC-CcEEEEcCCCC---------------------------------------------------------
Q psy9620 358 DVAARGLDVDD-VKFVINFDYPN--------------------------------------------------------- 379 (453)
Q Consensus 358 ~~~~~GiDip~-v~~VI~~d~p~--------------------------------------------------------- 379 (453)
+++++|||+|+ |++|||||+|.
T Consensus 366 dvlarGIDip~~V~~VI~~d~P~~~~Sle~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~i~~~~ 445 (1104)
T 4ddu_A 366 GKLTRGVDLPERIKYVIFWGTPSMRFSLELDKAPRFVLARVLKEMGLIKAQENPDVEELRKIAKEHLTQKEFVEKVKEMF 445 (1104)
T ss_dssp HHHCCSCCCTTTCCEEEEESCCEEEEECSSSSCCHHHHHHHHHHHSSCSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHC
T ss_pred CeeEecCcCCCCCCEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhcc
Confidence 99999999999 99999999998
Q ss_pred ---------------ChhHHHHhhhcccCCCCcc--eEEEEEcCCChHHHHHHHHHHH
Q psy9620 380 ---------------NSEDYIHRIGRTGRSDNTG--TSYTFFTQQNSRQAKDLIDVLT 420 (453)
Q Consensus 380 ---------------s~~~y~qr~GRagR~g~~g--~~~~~~~~~~~~~~~~l~~~l~ 420 (453)
+..+|+||+|||||.+..| .+++++..+|...++.|.+.++
T Consensus 446 ~~l~~~~~~~~~~~pd~~tYihr~GRtgR~~~gg~~~Glsi~~~~d~~~~~~l~~~~~ 503 (1104)
T 4ddu_A 446 RGVVVKDEDLELIIPDVYTYIQASGRSSRILNGVLVKGVSVIFEEDEEIFESLKTRLL 503 (1104)
T ss_dssp CSSEEETTTTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECCCHHHHHHHHHHHH
T ss_pred ceEEecCCeeEEEecChhhhhcccCchhcccCCCcccceEEEEEecHHHHHHHHHHHh
Confidence 7789999999999975432 3444444577888888887776
|
| >4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-35 Score=319.25 Aligned_cols=273 Identities=20% Similarity=0.228 Sum_probs=163.7
Q ss_pred CCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhc
Q psy9620 131 QGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFG 210 (453)
Q Consensus 131 ~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~ 210 (453)
.++..|+++|.++++.+++++|+|+++|||+|||++|++|++..+...+. ..++++|||+||++|+.|+.+.+++++
T Consensus 244 ~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~---~~~~~vLvl~Pt~~L~~Q~~~~~~~~~ 320 (936)
T 4a2w_A 244 YETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPA---GRKAKVVFLATKVPVYEQQKNVFKHHF 320 (936)
T ss_dssp ----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCS---SCCCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhccc---cCCCeEEEEeCCHHHHHHHHHHHHHHh
Confidence 36779999999999999999999999999999999999999887765321 236679999999999999999999998
Q ss_pred CCCCceEEEEeCCccCCCC-------------------------------------------------------------
Q psy9620 211 SSTYLRSTCVYGGASKGPQ------------------------------------------------------------- 229 (453)
Q Consensus 211 ~~~~~~~~~~~gg~~~~~~------------------------------------------------------------- 229 (453)
...++++..++|+.....+
T Consensus 321 ~~~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~~~~i~~~~~~~~ 400 (936)
T 4a2w_A 321 ERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQK 400 (936)
T ss_dssp HTTTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHHHH
T ss_pred cccCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCccHHHHHHHHHHHh
Confidence 8778999999998754432
Q ss_pred -----CCceEEEEeccCcH-----------HHHHHHHHhh------------------ccceEEEecccccccCcc----
Q psy9620 230 -----PDRQVLMWSATWPR-----------EVQKLAEDFL------------------DSYIQINIGSLTLSANHN---- 271 (453)
Q Consensus 230 -----~~~q~v~~SAT~~~-----------~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~---- 271 (453)
+..+++++|||+.. .+..+...+. ..+......... .....
T Consensus 401 ~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~-~~~~~~~~~ 479 (936)
T 4a2w_A 401 FNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKR-RIHNPFAAI 479 (936)
T ss_dssp HTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCC-CSCCHHHHH
T ss_pred hccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceEEeccc-ccCcHHHHH
Confidence 22689999999842 2222221111 111100000000 00000
Q ss_pred ----------c-e---------eEEE----------E-------------------------------------------
Q psy9620 272 ----------I-Q---------QVVE----------V------------------------------------------- 278 (453)
Q Consensus 272 ----------i-~---------~~~~----------~------------------------------------------- 278 (453)
+ . +... .
T Consensus 480 l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~al~i~ 559 (936)
T 4a2w_A 480 ISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIIS 559 (936)
T ss_dssp HHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 0 0 0000 0
Q ss_pred -------------------------------------------------ccccchhhhHHHHHHhhh-cCCCCcEEEEEc
Q psy9620 279 -------------------------------------------------CAEHEKENKLFGLLNDIS-SKDENKTIIFAE 308 (453)
Q Consensus 279 -------------------------------------------------~~~~~k~~~l~~ll~~~~-~~~~~~~lVF~~ 308 (453)
.....|...|..+|.... .....++||||+
T Consensus 560 ~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~rvLIF~~ 639 (936)
T 4a2w_A 560 EDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAK 639 (936)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTCCEEEEES
T ss_pred cchhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCCCCeEEEEeC
Confidence 001223344444554432 234579999999
Q ss_pred chhHHHHHHHHHHhc------------CCeEEEEcCCCCHHHHHHHHHHHhc-CCCcEEEEeccCccCCCCCCCcEEEEc
Q psy9620 309 TKRKVDKITKSIQNY------------GWAAVGIHGDKSQQERDYVLKEFRN-GRAGILVATDVAARGLDVDDVKFVINF 375 (453)
Q Consensus 309 s~~~~~~l~~~L~~~------------~~~~~~~h~~~~~~~r~~~~~~f~~-g~~~vLvaT~~~~~GiDip~v~~VI~~ 375 (453)
++..++.|++.|... |..+..+|++|++.+|..++++|++ |+++|||||+++++|||+|+|++||+|
T Consensus 640 t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp~v~~VI~y 719 (936)
T 4a2w_A 640 TRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLY 719 (936)
T ss_dssp SHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC------CCCCSEEEEE
T ss_pred CHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcchhCCEEEEe
Confidence 999999999999986 5556677999999999999999999 999999999999999999999999999
Q ss_pred CCCCChhHHHHhhhcccCCCCcceEEEEEcCCCh
Q psy9620 376 DYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNS 409 (453)
Q Consensus 376 d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~ 409 (453)
|+|.|+..|+||+|| ||. .+|.+++|++..+.
T Consensus 720 D~p~s~~~~iQr~GR-GR~-~~g~vi~Li~~~t~ 751 (936)
T 4a2w_A 720 EYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEV 751 (936)
T ss_dssp SCCSCSHHHHCC---------CCCEEEEESCHHH
T ss_pred CCCCCHHHHHHhcCC-CCC-CCCEEEEEEeCCCH
Confidence 999999999999999 999 78999999987654
|
| >2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-34 Score=316.05 Aligned_cols=272 Identities=19% Similarity=0.171 Sum_probs=213.9
Q ss_pred CCCHHHHHHHH-HCCCCCCCHHHHHHHHHHhc----CC--cEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEE
Q psy9620 119 NFPDYVLKEVK-RQGFDRPTPIQAQGWPIAMS----GS--NMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLV 191 (453)
Q Consensus 119 ~l~~~l~~~l~-~~g~~~~~~~Q~~~i~~i~~----g~--d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vli 191 (453)
++++.+.+.+. .++| ++||+|.++++.+++ ++ |+|++++||+|||++|+++++..+. .++++||
T Consensus 587 ~~~~~~~~~~~~~f~~-~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~--------~g~~vlv 657 (1151)
T 2eyq_A 587 KHDREQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD--------NHKQVAV 657 (1151)
T ss_dssp CCCHHHHHHHHHTCCS-CCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHT--------TTCEEEE
T ss_pred CCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHH--------hCCeEEE
Confidence 45566666664 4577 579999999999886 66 9999999999999999999887654 3568999
Q ss_pred EcCCHHHHHHHHHHHHHhcCCCCceEEEEeCCccCC-------------CC-----------------------------
Q psy9620 192 LAPTRELAQQIQEVARDFGSSTYLRSTCVYGGASKG-------------PQ----------------------------- 229 (453)
Q Consensus 192 l~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~-------------~~----------------------------- 229 (453)
++||++||.|+++.+.++....++++..+.+..... ..
T Consensus 658 lvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~l~lvIiDEaH~~ 737 (1151)
T 2eyq_A 658 LVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRF 737 (1151)
T ss_dssp ECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSSEEEEEEESGGGS
T ss_pred EechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCccccccceEEEechHhc
Confidence 999999999999999988877778877776543211 00
Q ss_pred ------------CCceEEEEeccCcHHHHHHHHHhhccceEEEecccccccCccceeEEEEccccchhhhHHHHHHhhhc
Q psy9620 230 ------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISS 297 (453)
Q Consensus 230 ------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~ 297 (453)
...++++||||+++....+....+.+...+.... .....+...+.. ..+......++..+.
T Consensus 738 g~~~~~~l~~l~~~~~vl~lSATp~p~~l~~~~~~~~~~~~i~~~~---~~r~~i~~~~~~---~~~~~i~~~il~~l~- 810 (1151)
T 2eyq_A 738 GVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPP---ARRLAVKTFVRE---YDSMVVREAILREIL- 810 (1151)
T ss_dssp CHHHHHHHHHHHTTSEEEEEESSCCCHHHHHHHTTTSEEEECCCCC---CBCBCEEEEEEE---CCHHHHHHHHHHHHT-
T ss_pred ChHHHHHHHHhcCCCCEEEEcCCCChhhHHHHHhcCCCceEEecCC---CCccccEEEEec---CCHHHHHHHHHHHHh-
Confidence 5689999999988777666655555443322111 111223333322 222233334444442
Q ss_pred CCCCcEEEEEcchhHHHHHHHHHHhc--CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEEEc
Q psy9620 298 KDENKTIIFAETKRKVDKITKSIQNY--GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVINF 375 (453)
Q Consensus 298 ~~~~~~lVF~~s~~~~~~l~~~L~~~--~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~ 375 (453)
..++++|||+++..++.+++.|... ++.+..+||+|++.+|+.++++|++|+.+|||||+++++|||+|++++||++
T Consensus 811 -~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip~v~~VIi~ 889 (1151)
T 2eyq_A 811 -RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIE 889 (1151)
T ss_dssp -TTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEEEEET
T ss_pred -cCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeecccCCcEEEEe
Confidence 3679999999999999999999987 7899999999999999999999999999999999999999999999999999
Q ss_pred CC-CCChhHHHHhhhcccCCCCcceEEEEEcCC
Q psy9620 376 DY-PNNSEDYIHRIGRTGRSDNTGTSYTFFTQQ 407 (453)
Q Consensus 376 d~-p~s~~~y~qr~GRagR~g~~g~~~~~~~~~ 407 (453)
+. +.++.+|+||+||+||.|..|.|++++.+.
T Consensus 890 ~~~~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~ 922 (1151)
T 2eyq_A 890 RADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 922 (1151)
T ss_dssp TTTSSCHHHHHHHHTTCCBTTBCEEEEEEECCG
T ss_pred CCCCCCHHHHHHHHhccCcCCCceEEEEEECCc
Confidence 98 568999999999999999999999998764
|
| >2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-36 Score=301.25 Aligned_cols=264 Identities=17% Similarity=0.132 Sum_probs=187.5
Q ss_pred CCCCCCHHHHHHHHHHhcCCcE-EEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhc
Q psy9620 132 GFDRPTPIQAQGWPIAMSGSNM-VGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFG 210 (453)
Q Consensus 132 g~~~~~~~Q~~~i~~i~~g~d~-li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~ 210 (453)
|+.+|+|+|+ ++|.+++++++ ++++|||||||++|++|++..+.. .++++||++||++||.|+.+.+..+.
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~-------~~~~~lvl~Ptr~La~Q~~~~l~g~~ 72 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALL-------RRLRTLILAPTRVVAAEMEEALRGLP 72 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHH-------TTCCEEEEESSHHHHHHHHHHTTTSC
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHh-------cCCcEEEECCCHHHHHHHHHHhcCce
Confidence 6789999985 79999998887 889999999999999999987654 35679999999999999999885431
Q ss_pred CC---C--------CceEEEEeCCcc---------CCC-C---------------------------CCceEEEEeccCc
Q psy9620 211 SS---T--------YLRSTCVYGGAS---------KGP-Q---------------------------PDRQVLMWSATWP 242 (453)
Q Consensus 211 ~~---~--------~~~~~~~~gg~~---------~~~-~---------------------------~~~q~v~~SAT~~ 242 (453)
.. . +..+..+..+.- ... . ++.|+++||||++
T Consensus 73 v~~~~~~~~~~~~~~~~i~~~t~~~l~~~l~~~~~l~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~ 152 (451)
T 2jlq_A 73 IRYQTPAVKSDHTGREIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFTDPCSVAARGYISTRVEMGEAAAIFMTATPP 152 (451)
T ss_dssp EEECCTTCSCCCCSSCCEEEEEHHHHHHHHHHCSCCCCCSEEEEETTTCCSHHHHHHHHHHHHHHHTTSCEEEEECSSCT
T ss_pred eeeeeccccccCCCCceEEEEChHHHHHHhhCcccccCCCEEEEeCCccCCcchHHHHHHHHHhhcCCCceEEEEccCCC
Confidence 00 0 001111111100 000 0 4789999999998
Q ss_pred HHHHHHHHHhhccceEEEecccccccCccceeEEEEccccchhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHh
Q psy9620 243 REVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQN 322 (453)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~ 322 (453)
..+.. .+..++..+.+... .+. .....+...+.. ..+++||||++++.|+.+++.|..
T Consensus 153 ~~~~~---~~~~~~~~~~~~~~---~p~------------~~~~~~~~~l~~----~~~~~lVF~~s~~~a~~l~~~L~~ 210 (451)
T 2jlq_A 153 GSTDP---FPQSNSPIEDIERE---IPE------------RSWNTGFDWITD----YQGKTVWFVPSIKAGNDIANCLRK 210 (451)
T ss_dssp TCCCS---SCCCSSCEEEEECC---CCS------------SCCSSSCHHHHH----CCSCEEEECSSHHHHHHHHHHHHT
T ss_pred ccchh---hhcCCCceEecCcc---CCc------------hhhHHHHHHHHh----CCCCEEEEcCCHHHHHHHHHHHHH
Confidence 74432 12223222222110 000 000111222322 256999999999999999999999
Q ss_pred cCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEEEcC--------------------CCCChh
Q psy9620 323 YGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVINFD--------------------YPNNSE 382 (453)
Q Consensus 323 ~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d--------------------~p~s~~ 382 (453)
.++.+..+|+++. ..+++.|++|+.+|||||+++++|||+|+ ++||+|| .|.+.+
T Consensus 211 ~g~~~~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~l~~~~~~p~s~~ 285 (451)
T 2jlq_A 211 SGKRVIQLSRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPERVILAGPIPVTPA 285 (451)
T ss_dssp TTCCEEEECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSCEEEEEEEEECCHH
T ss_pred cCCeEEECCHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCcccccccccccceeeecccccCCHH
Confidence 9999999999754 57899999999999999999999999999 9999999 999999
Q ss_pred HHHHhhhcccCCCC-cceEEEEEcCCC---hHHHHHHHHHHHhcCCCCChHH
Q psy9620 383 DYIHRIGRTGRSDN-TGTSYTFFTQQN---SRQAKDLIDVLTESNHPVDPKL 430 (453)
Q Consensus 383 ~y~qr~GRagR~g~-~g~~~~~~~~~~---~~~~~~l~~~l~~~~~~v~~~l 430 (453)
+|+||+||+||.|. +|.|++|+...+ ..........+...+.++|+.+
T Consensus 286 ~y~Qr~GRaGR~g~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 337 (451)
T 2jlq_A 286 SAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEAKMLLDNIYTPEGI 337 (451)
T ss_dssp HHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHHHHHHTTCCCTTCC
T ss_pred HHHHhccccCCCCCCCccEEEEeCCchhhcchhHHHHHHHHHHhcCCChhHh
Confidence 99999999999998 889988875432 1111222233444555666544
|
| >2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-36 Score=314.72 Aligned_cols=258 Identities=18% Similarity=0.222 Sum_probs=186.8
Q ss_pred HHHCCCC-----CCCHHHH-----HHHHHHh------cCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEE
Q psy9620 128 VKRQGFD-----RPTPIQA-----QGWPIAM------SGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLV 191 (453)
Q Consensus 128 l~~~g~~-----~~~~~Q~-----~~i~~i~------~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vli 191 (453)
+..+||. .|+++|+ ++||.++ +++|+|++||||||||++|++|++..+.. .++++||
T Consensus 203 l~~~Gf~~~~~~~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~-------~~~~~li 275 (673)
T 2wv9_A 203 LYGNGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQ-------KRLRTAV 275 (673)
T ss_dssp EEEEEEECSSSCEEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHH-------TTCCEEE
T ss_pred eeeccccccCCCccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHh-------CCCcEEE
Confidence 3344666 8999999 9999888 89999999999999999999999988664 3567999
Q ss_pred EcCCHHHHHHHHHHHHHhcCCCCce-----------EEEEeCCcc---------CCC-C---------------------
Q psy9620 192 LAPTRELAQQIQEVARDFGSSTYLR-----------STCVYGGAS---------KGP-Q--------------------- 229 (453)
Q Consensus 192 l~Ptr~La~q~~~~~~~~~~~~~~~-----------~~~~~gg~~---------~~~-~--------------------- 229 (453)
|+||++||.|+++.+..+.-..... ...+..+.- ... .
T Consensus 276 laPTr~La~Q~~~~l~~~~i~~~~~~l~~v~tp~~ll~~l~~~~l~~~l~~~~~l~~l~lvViDEaH~~~~~~~~~~~~l 355 (673)
T 2wv9_A 276 LAPTRVVAAEMAEALRGLPVRYLTPAVQREHSGNEIVDVMCHATLTHRLMSPLRVPNYNLFVMDEAHFTDPASIAARGYI 355 (673)
T ss_dssp EESSHHHHHHHHHHTTTSCCEECCC---CCCCSCCCEEEEEHHHHHHHHHSSSCCCCCSEEEEESTTCCCHHHHHHHHHH
T ss_pred EccHHHHHHHHHHHHhcCCeeeecccccccCCHHHHHHHHHhhhhHHHHhcccccccceEEEEeCCcccCccHHHHHHHH
Confidence 9999999999999887652111000 000000000 000 0
Q ss_pred ------CCceEEEEeccCcHHHHHHHHHhhccceEEEecccccccCccceeEEEEccccchhhhHHHHHHhhhcCCCCcE
Q psy9620 230 ------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKT 303 (453)
Q Consensus 230 ------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~ 303 (453)
...|+++||||++..+..+... + ..+.......... ....++..+. . ...++
T Consensus 356 ~~~~~~~~~~vl~~SAT~~~~i~~~~~~---~--------------~~i~~v~~~~~~~-~~~~~l~~l~---~-~~~~~ 413 (673)
T 2wv9_A 356 ATRVEAGEAAAIFMTATPPGTSDPFPDT---N--------------SPVHDVSSEIPDR-AWSSGFEWIT---D-YAGKT 413 (673)
T ss_dssp HHHHHTTSCEEEEECSSCTTCCCSSCCC---S--------------SCEEEEECCCCSS-CCSSCCHHHH---S-CCSCE
T ss_pred HHhccccCCcEEEEcCCCChhhhhhccc---C--------------CceEEEeeecCHH-HHHHHHHHHH---h-CCCCE
Confidence 4689999999998653321110 0 0111110001111 1112222222 2 46799
Q ss_pred EEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEEE---------
Q psy9620 304 IIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVIN--------- 374 (453)
Q Consensus 304 lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~--------- 374 (453)
||||++++.++.+++.|...++.+..+|+. +|+.+++.|++|+.+|||||+++++|||+| +++||+
T Consensus 414 lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g~~~~p~v 488 (673)
T 2wv9_A 414 VWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRVIDCRKSVKPTI 488 (673)
T ss_dssp EEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEECCEECCEEE
T ss_pred EEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCCceEEEECchhhcceeeC-CcEEEECCCccccee
Confidence 999999999999999999999999999993 899999999999999999999999999999 999998
Q ss_pred -----------cCCCCChhHHHHhhhcccCC-CCcceEEEEE---cCCChHHHHHHHHHH
Q psy9620 375 -----------FDYPNNSEDYIHRIGRTGRS-DNTGTSYTFF---TQQNSRQAKDLIDVL 419 (453)
Q Consensus 375 -----------~d~p~s~~~y~qr~GRagR~-g~~g~~~~~~---~~~~~~~~~~l~~~l 419 (453)
||+|.+.++|+||+||+||. ++.|.|++|+ ++.+...++.+...+
T Consensus 489 i~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~~~l~~ie~~~ 548 (673)
T 2wv9_A 489 LDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGGGTSEDDTMLAHWTEAKI 548 (673)
T ss_dssp ECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECSCCCCCCTTBHHHHHHHH
T ss_pred eecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEecCChhHHHHHHHHHHHH
Confidence 67899999999999999999 7899999996 566665555555444
|
| >4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-34 Score=313.08 Aligned_cols=258 Identities=16% Similarity=0.192 Sum_probs=192.5
Q ss_pred CCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhcC
Q psy9620 132 GFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGS 211 (453)
Q Consensus 132 g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~~ 211 (453)
+| .|+++|.++|+.+++++|+++++|||||||++|+++++..+. .++++||++||++|+.|+++.+.+++.
T Consensus 37 ~f-~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~--------~g~~vlvl~PtraLa~Q~~~~l~~~~~ 107 (997)
T 4a4z_A 37 PF-ELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHR--------NMTKTIYTSPIKALSNQKFRDFKETFD 107 (997)
T ss_dssp SS-CCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHH--------TTCEEEEEESCGGGHHHHHHHHHTTC-
T ss_pred CC-CCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHh--------cCCeEEEEeCCHHHHHHHHHHHHHHcC
Confidence 56 689999999999999999999999999999999999887653 366899999999999999999998753
Q ss_pred CCCceEEEEeCCccCCCC-----------------------------------------------------CCceEEEEe
Q psy9620 212 STYLRSTCVYGGASKGPQ-----------------------------------------------------PDRQVLMWS 238 (453)
Q Consensus 212 ~~~~~~~~~~gg~~~~~~-----------------------------------------------------~~~q~v~~S 238 (453)
++++..++|+.....+ ...|+|++|
T Consensus 108 --~~~v~~l~G~~~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l~~~v~iIlLS 185 (997)
T 4a4z_A 108 --DVNIGLITGDVQINPDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHVKFILLS 185 (997)
T ss_dssp ---CCEEEECSSCEECTTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHHSCTTCEEEEEE
T ss_pred --CCeEEEEeCCCccCCCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccccchHHHHHHHHHhcccCCCEEEEc
Confidence 5677888887654433 568999999
Q ss_pred ccCcHHHHHHHHHhhc---cceEEEecccccccCccceeEEEE-------cc----------------------------
Q psy9620 239 ATWPREVQKLAEDFLD---SYIQINIGSLTLSANHNIQQVVEV-------CA---------------------------- 280 (453)
Q Consensus 239 AT~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~~~~~~-------~~---------------------------- 280 (453)
||++... +++.++.. ..+.+...... ...+.+.+.. ..
T Consensus 186 AT~~n~~-ef~~~l~~~~~~~~~vi~~~~r---~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 261 (997)
T 4a4z_A 186 ATVPNTY-EFANWIGRTKQKNIYVISTPKR---PVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAKGAPSK 261 (997)
T ss_dssp CCCTTHH-HHHHHHHHHHTCCEEEEECSSC---SSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC----------
T ss_pred CCCCChH-HHHHHHhcccCCceEEEecCCC---CccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhcccccccccc
Confidence 9987543 45555432 22221111100 0111111100 00
Q ss_pred -------------------------------------------------------ccchhhhHHHHHHhhhcCCCCcEEE
Q psy9620 281 -------------------------------------------------------EHEKENKLFGLLNDISSKDENKTII 305 (453)
Q Consensus 281 -------------------------------------------------------~~~k~~~l~~ll~~~~~~~~~~~lV 305 (453)
.......+..++..+......++||
T Consensus 262 ~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~IV 341 (997)
T 4a4z_A 262 TDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRKRELLPMVV 341 (997)
T ss_dssp -------------------------------------------------------CCCCTTHHHHHHHHHHHTTCCSEEE
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHHHhCCCCCEEE
Confidence 0001122334444444455679999
Q ss_pred EEcchhHHHHHHHHHHhcCC---------------------------------------eEEEEcCCCCHHHHHHHHHHH
Q psy9620 306 FAETKRKVDKITKSIQNYGW---------------------------------------AAVGIHGDKSQQERDYVLKEF 346 (453)
Q Consensus 306 F~~s~~~~~~l~~~L~~~~~---------------------------------------~~~~~h~~~~~~~r~~~~~~f 346 (453)
||++++.|+.++..|...++ .+..+|++|++.+|..+++.|
T Consensus 342 F~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~v~~~F 421 (997)
T 4a4z_A 342 FVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEILF 421 (997)
T ss_dssp ECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHH
T ss_pred EECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHHHHHHHH
Confidence 99999999999999976554 579999999999999999999
Q ss_pred hcCCCcEEEEeccCccCCCCCCCcEEEEcCCCC---------ChhHHHHhhhcccCCC--CcceEEEEEc
Q psy9620 347 RNGRAGILVATDVAARGLDVDDVKFVINFDYPN---------NSEDYIHRIGRTGRSD--NTGTSYTFFT 405 (453)
Q Consensus 347 ~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~---------s~~~y~qr~GRagR~g--~~g~~~~~~~ 405 (453)
++|.++|||||+++++|||+|+ ..||+++.|. |..+|+||+|||||.| ..|.|++++.
T Consensus 422 ~~G~~kVLvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~~ 490 (997)
T 4a4z_A 422 SKGFIKVLFATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAY 490 (997)
T ss_dssp HTTCCSEEEECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEEEECC
T ss_pred HCCCCcEEEEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCcceEEEEecC
Confidence 9999999999999999999999 5555555544 9999999999999998 5677888873
|
| >1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-36 Score=299.89 Aligned_cols=249 Identities=19% Similarity=0.230 Sum_probs=175.6
Q ss_pred HHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhcCCCCce---------
Q psy9620 146 IAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGSSTYLR--------- 216 (453)
Q Consensus 146 ~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~~~~~~~--------- 216 (453)
.+++++|+|++||||||||++|++|++..+.. .++++||++||++||.|+++.+..+.-.....
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~-------~~~~~lil~Ptr~La~Q~~~~l~~~~v~~~~~~~~~v~Tp~ 76 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECAR-------RRLRTLVLAPTRVVLSEMKEAFHGLDVKFHTQAFSAHGSGR 76 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHH-------TTCCEEEEESSHHHHHHHHHHTTTSCEEEESSCCCCCCCSS
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHh-------cCCeEEEEcchHHHHHHHHHHHhcCCeEEecccceeccCCc
Confidence 46789999999999999999999999987764 35679999999999999999887552100000
Q ss_pred --EEEEe----------------------CCccCCC---------------CCCceEEEEeccCcHHHHHHHHHhhccce
Q psy9620 217 --STCVY----------------------GGASKGP---------------QPDRQVLMWSATWPREVQKLAEDFLDSYI 257 (453)
Q Consensus 217 --~~~~~----------------------gg~~~~~---------------~~~~q~v~~SAT~~~~~~~~~~~~~~~~~ 257 (453)
...+. .....-. ..+.|+++||||+++.+..++.. ..++
T Consensus 77 ~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~--~~~~ 154 (440)
T 1yks_A 77 EVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFLDPASIAARGWAAHRARANESATILMTATPPGTSDEFPHS--NGEI 154 (440)
T ss_dssp CCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCCSHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSCCC--SSCE
T ss_pred cceeeecccchhHhhhCcccccCccEEEEECccccCcchHHHHHHHHHHhccCCceEEEEeCCCCchhhhhhhc--CCCe
Confidence 00000 0000000 04689999999998754322211 0011
Q ss_pred EEEecccccccCccceeEEEEccccchhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHH
Q psy9620 258 QINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQ 337 (453)
Q Consensus 258 ~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~ 337 (453)
......+..... ..+...+.. ...++||||++++.|+.+++.|...++.+..+|| .
T Consensus 155 ---------------~~~~~~~~~~~~-~~~~~~l~~----~~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg----~ 210 (440)
T 1yks_A 155 ---------------EDVQTDIPSEPW-NTGHDWILA----DKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNR----K 210 (440)
T ss_dssp ---------------EEEECCCCSSCC-SSSCHHHHH----CCSCEEEECSCHHHHHHHHHHHHHTTCCEEECCS----S
T ss_pred ---------------eEeeeccChHHH-HHHHHHHHh----cCCCEEEEeCCHHHHHHHHHHHHHcCCCEEEecc----h
Confidence 000011111111 122222222 2579999999999999999999999999999999 4
Q ss_pred HHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEEE-------------------cCCCCChhHHHHhhhcccCC-CCc
Q psy9620 338 ERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVIN-------------------FDYPNNSEDYIHRIGRTGRS-DNT 397 (453)
Q Consensus 338 ~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~-------------------~d~p~s~~~y~qr~GRagR~-g~~ 397 (453)
+|..+++.|++|+.+|||||+++++|||+| +++||+ ++.|.+.++|+||+||+||. +.+
T Consensus 211 ~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~ 289 (440)
T 1yks_A 211 TFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRD 289 (440)
T ss_dssp SCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCC
T ss_pred hHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeeccccccCHHHHHHhccccCCCCCCC
Confidence 688999999999999999999999999999 999986 89999999999999999998 689
Q ss_pred ceEEEEE---cCCChHHHHHHHHHHHhcCCCCCh
Q psy9620 398 GTSYTFF---TQQNSRQAKDLIDVLTESNHPVDP 428 (453)
Q Consensus 398 g~~~~~~---~~~~~~~~~~l~~~l~~~~~~v~~ 428 (453)
|.|++|+ ++.+...++.+...+.....+++.
T Consensus 290 g~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~l~~ 323 (440)
T 1yks_A 290 GDSYYYSEPTSENNAHHVCWLEASMLLDNMEVRG 323 (440)
T ss_dssp CEEEEECSCCCCCCTTBHHHHHHHHHHTTSCCGG
T ss_pred ceEEEEeccCChhhhhhhhhhhHHhccccccccc
Confidence 9999996 677777788777777666666654
|
| >4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-35 Score=313.45 Aligned_cols=119 Identities=25% Similarity=0.463 Sum_probs=96.0
Q ss_pred hhhHHHHHHhh-hcCC-CCcEEEEEcchhHHHHHHHHHHhc------CCeEEEEcCC--------CCHHHHHHHHHHHhc
Q psy9620 285 ENKLFGLLNDI-SSKD-ENKTIIFAETKRKVDKITKSIQNY------GWAAVGIHGD--------KSQQERDYVLKEFRN 348 (453)
Q Consensus 285 ~~~l~~ll~~~-~~~~-~~~~lVF~~s~~~~~~l~~~L~~~------~~~~~~~h~~--------~~~~~r~~~~~~f~~ 348 (453)
...|..+|... .... ..++||||+++..++.+++.|... ++.+..+||+ |++.+|..++++|++
T Consensus 383 ~~~L~~~L~~~~~~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~ 462 (699)
T 4gl2_A 383 LTKLRNTIMEQYTRTEESARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRT 462 (699)
T ss_dssp SSCSHHHHHHHHHHSSSCCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhcCCCCCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhc
Confidence 33444444442 2223 679999999999999999999987 8999999999 999999999999999
Q ss_pred CCCcEEEEeccCccCCCCCCCcEEEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcC
Q psy9620 349 GRAGILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQ 406 (453)
Q Consensus 349 g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~ 406 (453)
|+.+|||||+++++|||+|+|++||+||+|.|+..|+||+|||||.| .+++++..
T Consensus 463 g~~~VLVaT~~~~~GIDip~v~~VI~~d~p~s~~~~~Qr~GRArr~g---~~~~l~~~ 517 (699)
T 4gl2_A 463 GKINLLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRARADE---STYVLVAH 517 (699)
T ss_dssp ---CCSEEECSCCTTSCCCSCCCCEEESCCCCHHHHHHHHTTSCSSS---CEEEEEEE
T ss_pred CCCcEEEEccccccCCccccCCEEEEeCCCCCHHHHHHHcCCCCCCC---ceEEEEEe
Confidence 99999999999999999999999999999999999999999976653 45555544
|
| >1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-34 Score=292.13 Aligned_cols=267 Identities=25% Similarity=0.303 Sum_probs=200.6
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhcCCCC
Q psy9620 135 RPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGSSTY 214 (453)
Q Consensus 135 ~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~~~~~ 214 (453)
.|+|+|.++++.++++ ++++.+|||+|||++++++++..+.. .+.++|||+|+++|+.|+.+++.++.....
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~-------~~~~~liv~P~~~L~~q~~~~~~~~~~~~~ 80 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTK-------YGGKVLMLAPTKPLVLQHAESFRRLFNLPP 80 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHH-------SCSCEEEECSSHHHHHHHHHHHHHHBCSCG
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhc-------CCCeEEEEECCHHHHHHHHHHHHHHhCcch
Confidence 7999999999999998 99999999999999999999887652 355799999999999999999999975444
Q ss_pred ceEEEEeCCccCCC--------C---------------------------------------------------CCceEE
Q psy9620 215 LRSTCVYGGASKGP--------Q---------------------------------------------------PDRQVL 235 (453)
Q Consensus 215 ~~~~~~~gg~~~~~--------~---------------------------------------------------~~~q~v 235 (453)
.++..++|+..... . ...+++
T Consensus 81 ~~v~~~~g~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~~~~l 160 (494)
T 1wp9_A 81 EKIVALTGEKSPEERSKAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVI 160 (494)
T ss_dssp GGEEEECSCSCHHHHHHHHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSCCEE
T ss_pred hheEEeeCCcchhhhhhhccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcHHHHHHHHHhcCCCCeEE
Confidence 57777777653211 0 467899
Q ss_pred EEeccCcHH---HHHHHHHhhccceEEEecccc-c---ccCccceeEEEE------------------------------
Q psy9620 236 MWSATWPRE---VQKLAEDFLDSYIQINIGSLT-L---SANHNIQQVVEV------------------------------ 278 (453)
Q Consensus 236 ~~SAT~~~~---~~~~~~~~~~~~~~~~~~~~~-~---~~~~~i~~~~~~------------------------------ 278 (453)
++|||+..+ +..+...+............. . ............
T Consensus 161 ~lTaTp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (494)
T 1wp9_A 161 GLTASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETGLLE 240 (494)
T ss_dssp EEESCSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHTSSS
T ss_pred EEecCCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999733 333433332221111100000 0 000000000000
Q ss_pred --------------------------------------------------------------------------------
Q psy9620 279 -------------------------------------------------------------------------------- 278 (453)
Q Consensus 279 -------------------------------------------------------------------------------- 278 (453)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 320 (494)
T 1wp9_A 241 SSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKEIF 320 (494)
T ss_dssp CCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred ccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccchhhhhhh
Confidence
Q ss_pred ------------------ccccchhhhHHHHHHhhhc-CCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcC-------
Q psy9620 279 ------------------CAEHEKENKLFGLLNDISS-KDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHG------- 332 (453)
Q Consensus 279 ------------------~~~~~k~~~l~~ll~~~~~-~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~------- 332 (453)
.....|...+.+++..... ....++||||+++..++.+++.|...++.+..+||
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~ 400 (494)
T 1wp9_A 321 SDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKEND 400 (494)
T ss_dssp TSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC---
T ss_pred hhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEecccccccc
Confidence 0122344445555554321 35679999999999999999999999999999999
Q ss_pred -CCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcCCChH
Q psy9620 333 -DKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSR 410 (453)
Q Consensus 333 -~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~ 410 (453)
+|+..+|..++++|++|+.+|||||+++++|||+|++++||+||+|.++..|+||+||+||.|+ |.++.|+++.+.+
T Consensus 401 ~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~-g~~~~l~~~~t~e 478 (494)
T 1wp9_A 401 RGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP-GRVIILMAKGTRD 478 (494)
T ss_dssp ----CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC-SEEEEEEETTSHH
T ss_pred ccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC-ceEEEEEecCCHH
Confidence 9999999999999999999999999999999999999999999999999999999999999987 9999999987643
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-34 Score=306.72 Aligned_cols=287 Identities=16% Similarity=0.262 Sum_probs=209.0
Q ss_pred CCccccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHh-cCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCc
Q psy9620 109 PNPITEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAM-SGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGP 187 (453)
Q Consensus 109 p~p~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~-~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~ 187 (453)
+.++.+|+++++++.+.+.+++.+ ..|+++|+++|+.++ .+++++++||||||||+ ++|++....... .+.++
T Consensus 68 ~~~~~~f~~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTt--llp~ll~~~~~~---~~~g~ 141 (773)
T 2xau_A 68 DGKINPFTGREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT--QIPQFVLFDEMP---HLENT 141 (773)
T ss_dssp HSSBCTTTCSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHH--HHHHHHHHHHCG---GGGTC
T ss_pred cCCCCCccccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHH--HHHHHHHHhccc---cCCCc
Confidence 346678999999999999999887 689999999999877 56789999999999998 566663222111 11366
Q ss_pred EEEEEcCCHHHHHHHHHHHHHhc-CCCCceEE----------------EEeCCccC--------CCC-------------
Q psy9620 188 IVLVLAPTRELAQQIQEVARDFG-SSTYLRST----------------CVYGGASK--------GPQ------------- 229 (453)
Q Consensus 188 ~vlil~Ptr~La~q~~~~~~~~~-~~~~~~~~----------------~~~gg~~~--------~~~------------- 229 (453)
+++|++|+++|+.|+.+.+.... ...+..+. .++.|.-. -..
T Consensus 142 ~ilvl~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~~~~~~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ 221 (773)
T 2xau_A 142 QVACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFENKTSNKTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERT 221 (773)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHTTCCBTTTEEEEETTEEECCTTCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCC
T ss_pred eEEecCchHHHHHHHHHHHHHHhCCchhheecceeccccccCCCCCEEEECHHHHHHHHhhCccccCCCEEEecCccccc
Confidence 79999999999999988765532 12211111 11111000 000
Q ss_pred -----------------CCceEEEEeccCcHHHHHHHHHhhccceEEEecccccccCccceeEEEEccccchhhhHHHHH
Q psy9620 230 -----------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLL 292 (453)
Q Consensus 230 -----------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll 292 (453)
++.|+++||||++.+ .+. .++.+...+.+.... ..+...+......+.....+..+
T Consensus 222 ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~--~l~-~~~~~~~vi~v~gr~----~pv~~~~~~~~~~~~~~~~l~~l 294 (773)
T 2xau_A 222 LATDILMGLLKQVVKRRPDLKIIIMSATLDAE--KFQ-RYFNDAPLLAVPGRT----YPVELYYTPEFQRDYLDSAIRTV 294 (773)
T ss_dssp HHHHHHHHHHHHHHHHCTTCEEEEEESCSCCH--HHH-HHTTSCCEEECCCCC----CCEEEECCSSCCSCHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHhCCCceEEEEeccccHH--HHH-HHhcCCCcccccCcc----cceEEEEecCCchhHHHHHHHHH
Confidence 578999999999643 343 444544444433221 22333322222223333333333
Q ss_pred Hhh-hcCCCCcEEEEEcchhHHHHHHHHHHh-----------cCCeEEEEcCCCCHHHHHHHHHHHh-----cCCCcEEE
Q psy9620 293 NDI-SSKDENKTIIFAETKRKVDKITKSIQN-----------YGWAAVGIHGDKSQQERDYVLKEFR-----NGRAGILV 355 (453)
Q Consensus 293 ~~~-~~~~~~~~lVF~~s~~~~~~l~~~L~~-----------~~~~~~~~h~~~~~~~r~~~~~~f~-----~g~~~vLv 355 (453)
..+ .....+++||||+++.+++.+++.|.. .++.+..+||+|++.+|..+++.|+ +|..+|||
T Consensus 295 ~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlV 374 (773)
T 2xau_A 295 LQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVI 374 (773)
T ss_dssp HHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEE
T ss_pred HHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEE
Confidence 222 233577999999999999999999985 5788999999999999999999999 99999999
Q ss_pred EeccCccCCCCCCCcEEEEcCC------------------CCChhHHHHhhhcccCCCCcceEEEEEcCCCh
Q psy9620 356 ATDVAARGLDVDDVKFVINFDY------------------PNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNS 409 (453)
Q Consensus 356 aT~~~~~GiDip~v~~VI~~d~------------------p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~ 409 (453)
||+++++|||||+|++||++++ |.|.++|+||+|||||. .+|.|+.|+++.+.
T Consensus 375 AT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~~G~~~~l~~~~~~ 445 (773)
T 2xau_A 375 STNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEEAF 445 (773)
T ss_dssp ECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS-SSEEEEESSCHHHH
T ss_pred eCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC-CCCEEEEEecHHHh
Confidence 9999999999999999999888 88999999999999999 89999999986543
|
| >2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-35 Score=299.85 Aligned_cols=129 Identities=16% Similarity=0.206 Sum_probs=112.4
Q ss_pred EccccchhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEe
Q psy9620 278 VCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVAT 357 (453)
Q Consensus 278 ~~~~~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT 357 (453)
+....+|...+...+.... ....++||||+|+..++.|+..|...++++..+|+++.+.++..+.+.|+.| .|+|||
T Consensus 420 ~~~~~~K~~al~~~i~~~~-~~gqpvLVft~sie~se~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~G--~VtIAT 496 (853)
T 2fsf_A 420 YMTEAEKIQAIIEDIKERT-AKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPA--AVTIAT 496 (853)
T ss_dssp ESSHHHHHHHHHHHHHHHH-TTTCCEEEEESSHHHHHHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEE
T ss_pred EeCHHHHHHHHHHHHHHHh-cCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEec
Confidence 3444556666666665432 2356899999999999999999999999999999999888888888889888 699999
Q ss_pred ccCccCCCCCCC-------------------------------------cEEEEcCCCCChhHHHHhhhcccCCCCcceE
Q psy9620 358 DVAARGLDVDDV-------------------------------------KFVINFDYPNNSEDYIHRIGRTGRSDNTGTS 400 (453)
Q Consensus 358 ~~~~~GiDip~v-------------------------------------~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~ 400 (453)
++++||+||+.. .+||+++.|.|...|.||+||+||.|.+|.+
T Consensus 497 nmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s 576 (853)
T 2fsf_A 497 NMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSS 576 (853)
T ss_dssp SCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEE
T ss_pred ccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeE
Confidence 999999999974 5999999999999999999999999999999
Q ss_pred EEEEcCCCh
Q psy9620 401 YTFFTQQNS 409 (453)
Q Consensus 401 ~~~~~~~~~ 409 (453)
++|++.+|.
T Consensus 577 ~~fls~eD~ 585 (853)
T 2fsf_A 577 RFYLSMEDA 585 (853)
T ss_dssp EEEEETTSG
T ss_pred EEEecccHH
Confidence 999998763
|
| >2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-34 Score=293.84 Aligned_cols=264 Identities=18% Similarity=0.154 Sum_probs=195.4
Q ss_pred CCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhcCCC
Q psy9620 134 DRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGSST 213 (453)
Q Consensus 134 ~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~~~~ 213 (453)
.+|+++|.++++.+++++++++++|||+|||++|+++++..+.. ..+++|||+||++|+.|+.+.+.+++...
T Consensus 112 ~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~-------~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~ 184 (510)
T 2oca_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN-------YEGKILIIVPTTALTTQMADDFVDYRLFS 184 (510)
T ss_dssp ECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHH-------CSSEEEEEESSHHHHHHHHHHHHHTTSSC
T ss_pred CCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhC-------CCCeEEEEECcHHHHHHHHHHHHHhhcCC
Confidence 38999999999999999999999999999999999988877653 23479999999999999999999987666
Q ss_pred CceEEEEeCCccCCC----C----------------------------------------------CCceEEEEeccCcH
Q psy9620 214 YLRSTCVYGGASKGP----Q----------------------------------------------PDRQVLMWSATWPR 243 (453)
Q Consensus 214 ~~~~~~~~gg~~~~~----~----------------------------------------------~~~q~v~~SAT~~~ 243 (453)
.+++..++++..... . ...+++++|||++.
T Consensus 185 ~~~v~~~~~~~~~~~~~~~~~~I~i~T~~~l~~~~~~~~~~~~liIiDE~H~~~~~~~~~il~~~~~~~~~l~lSATp~~ 264 (510)
T 2oca_A 185 HAMIKKIGGGASKDDKYKNDAPVVVGTWQTVVKQPKEWFSQFGMMMNDECHLATGKSISSIISGLNNCMFKFGLSGSLRD 264 (510)
T ss_dssp GGGEEECGGGCCTTGGGCTTCSEEEEEHHHHTTSCGGGGGGEEEEEEETGGGCCHHHHHHHGGGCTTCCEEEEEESCGGG
T ss_pred ccceEEEecCCccccccccCCcEEEEeHHHHhhchhhhhhcCCEEEEECCcCCCcccHHHHHHhcccCcEEEEEEeCCCC
Confidence 677888877765531 1 46789999999976
Q ss_pred HHHHHHH-HhhccceEEEeccccc-----ccCccceeEEEEc---------------------cccchhhhHHHHHHhhh
Q psy9620 244 EVQKLAE-DFLDSYIQINIGSLTL-----SANHNIQQVVEVC---------------------AEHEKENKLFGLLNDIS 296 (453)
Q Consensus 244 ~~~~~~~-~~~~~~~~~~~~~~~~-----~~~~~i~~~~~~~---------------------~~~~k~~~l~~ll~~~~ 296 (453)
....+.. ..+.++....+..... .....+....... ....+...+.+++....
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 344 (510)
T 2oca_A 265 GKANIMQYVGMFGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKRNKWIAKLAIKLA 344 (510)
T ss_dssp CSSCHHHHHHHHCSEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred CcccHHHhHHhhCCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 5432111 1112222211111100 0000001100000 01122333444554443
Q ss_pred cCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEe-ccCccCCCCCCCcEEEEc
Q psy9620 297 SKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVAT-DVAARGLDVDDVKFVINF 375 (453)
Q Consensus 297 ~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT-~~~~~GiDip~v~~VI~~ 375 (453)
.....++||||+ .+.++.+++.|...+..+..+||+|++.+|+.+++.|++|+.+||||| +++++|+|+|++++||++
T Consensus 345 ~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~GiDip~v~~vi~~ 423 (510)
T 2oca_A 345 QKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGISVKNLHHVVLA 423 (510)
T ss_dssp TTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSCCCCSEEEEEES
T ss_pred hcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhcccccccCcEEEEe
Confidence 333445566655 899999999999988899999999999999999999999999999999 999999999999999999
Q ss_pred CCCCChhHHHHhhhcccCCCCcceEEEEEc
Q psy9620 376 DYPNNSEDYIHRIGRTGRSDNTGTSYTFFT 405 (453)
Q Consensus 376 d~p~s~~~y~qr~GRagR~g~~g~~~~~~~ 405 (453)
+.|.+...|+|++||+||.|+.+.++++++
T Consensus 424 ~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 424 HGVKSKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp SCCCSCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred CCCCCHHHHHHHHhcccccCCCCceEEEEE
Confidence 999999999999999999988775555555
|
| >1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-33 Score=287.65 Aligned_cols=265 Identities=20% Similarity=0.235 Sum_probs=203.5
Q ss_pred CCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhc
Q psy9620 131 QGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFG 210 (453)
Q Consensus 131 ~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~ 210 (453)
+|+ .|+++|..++|.+++|+ |+.++||+|||++|.+|++..... ++.|+||+||++||.|+++++..++
T Consensus 108 lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~--------g~~v~VvTpTreLA~Qdae~m~~l~ 176 (922)
T 1nkt_A 108 LDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALA--------GNGVHIVTVNDYLAKRDSEWMGRVH 176 (922)
T ss_dssp HSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTT--------TSCEEEEESSHHHHHHHHHHHHHHH
T ss_pred cCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHh--------CCCeEEEeCCHHHHHHHHHHHHHHH
Confidence 588 99999999999999998 999999999999999999765432 4459999999999999999999999
Q ss_pred CCCCceEEEEeCCccCCCC-------------------------------------------------------------
Q psy9620 211 SSTYLRSTCVYGGASKGPQ------------------------------------------------------------- 229 (453)
Q Consensus 211 ~~~~~~~~~~~gg~~~~~~------------------------------------------------------------- 229 (453)
...++++.+++||.+...+
T Consensus 177 ~~lGLsv~~i~gg~~~~~r~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPLiiSg 256 (922)
T 1nkt_A 177 RFLGLQVGVILATMTPDERRVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPLIISG 256 (922)
T ss_dssp HHTTCCEEECCTTCCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCEEEEE
T ss_pred hhcCCeEEEEeCCCCHHHHHHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCccceeecC
Confidence 8899999999988542110
Q ss_pred -----------------------------CCceEE-----------------EEeccCcHHHHHH---H--HHhhc-c--
Q psy9620 230 -----------------------------PDRQVL-----------------MWSATWPREVQKL---A--EDFLD-S-- 255 (453)
Q Consensus 230 -----------------------------~~~q~v-----------------~~SAT~~~~~~~~---~--~~~~~-~-- 255 (453)
..+|++ ++|||++.-...+ + ..++. +
T Consensus 257 ~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~~d~d 336 (922)
T 1nkt_A 257 PADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFSRDKD 336 (922)
T ss_dssp ECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCCBTTT
T ss_pred CCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHhhcccc
Confidence 146777 8899987432222 1 11111 1
Q ss_pred ce-----EE---------------------------------------Eecccc--------------------------
Q psy9620 256 YI-----QI---------------------------------------NIGSLT-------------------------- 265 (453)
Q Consensus 256 ~~-----~~---------------------------------------~~~~~~-------------------------- 265 (453)
++ .+ .+....
T Consensus 337 YiV~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~Ef~~iY 416 (922)
T 1nkt_A 337 YIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAAELHEIY 416 (922)
T ss_dssp EEECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHHHHHHHH
T ss_pred eeeecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHHHHHHHh
Confidence 00 00 000000
Q ss_pred ------cccCccc----eeEEEEccccchhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCC
Q psy9620 266 ------LSANHNI----QQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKS 335 (453)
Q Consensus 266 ------~~~~~~i----~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~ 335 (453)
.+.+..+ ...+.+....+|...+...+.... ....++||||+|+..++.|+..|...++++..+|+++.
T Consensus 417 ~l~vv~IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~-~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak~~ 495 (922)
T 1nkt_A 417 KLGVVSIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERY-AKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYH 495 (922)
T ss_dssp CCEEEECCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHH-HTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCH
T ss_pred CCCeEEeCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHH-hcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCChh
Confidence 0001111 112334455566666666665442 23568999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCC----------------------------------------------
Q psy9620 336 QQERDYVLKEFRNGRAGILVATDVAARGLDVDDV---------------------------------------------- 369 (453)
Q Consensus 336 ~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v---------------------------------------------- 369 (453)
+.++..+.+.|+.| .|+|||++++||+||+.+
T Consensus 496 ~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 573 (922)
T 1nkt_A 496 EQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKE 573 (922)
T ss_dssp HHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhH
Confidence 88887788888877 699999999999999975
Q ss_pred ------cEEEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcCCCh
Q psy9620 370 ------KFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNS 409 (453)
Q Consensus 370 ------~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~ 409 (453)
.+||+++.|.|...|.||+||+||.|.+|.+++|++.+|.
T Consensus 574 V~~~GGlhVI~te~pes~riy~qr~GRTGRqGdpG~s~fflSleD~ 619 (922)
T 1nkt_A 574 VIEAGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLGDE 619 (922)
T ss_dssp HHHTTSEEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEETTSH
T ss_pred HHhcCCcEEEeccCCCCHHHHHHHhcccccCCCCeeEEEEechhHH
Confidence 5999999999999999999999999999999999998775
|
| >2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-34 Score=289.10 Aligned_cols=230 Identities=19% Similarity=0.226 Sum_probs=166.6
Q ss_pred HHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhcCCCC---------
Q psy9620 144 WPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGSSTY--------- 214 (453)
Q Consensus 144 i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~~~~~--------- 214 (453)
...+.+++++|+++|||||||++|++|++..+.. .++++||++||++||.|+++.+..+.....
T Consensus 15 ~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~-------~~~~~lvl~Ptr~La~Q~~~~l~g~~v~~~~~~~~~~~t 87 (459)
T 2z83_A 15 PNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQ-------QRLRTAVLAPTRVVAAEMAEALRGLPVRYQTSAVQREHQ 87 (459)
T ss_dssp CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHH-------TTCCEEEEECSHHHHHHHHHHTTTSCEEECC--------
T ss_pred HHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHh-------CCCcEEEECchHHHHHHHHHHhcCceEeEEecccccCCC
Confidence 3445678999999999999999999999988764 356799999999999999998863310000
Q ss_pred --ceEEEEeCCc---------cCCC-C---------------------------CCceEEEEeccCcHHHHHHHHHhhcc
Q psy9620 215 --LRSTCVYGGA---------SKGP-Q---------------------------PDRQVLMWSATWPREVQKLAEDFLDS 255 (453)
Q Consensus 215 --~~~~~~~gg~---------~~~~-~---------------------------~~~q~v~~SAT~~~~~~~~~~~~~~~ 255 (453)
..+..+..+. .... . .+.|+++||||++..+..+... ..
T Consensus 88 ~~~~i~~~~~~~l~~~l~~~~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~~~~~~~~~il~SAT~~~~~~~~~~~--~~ 165 (459)
T 2z83_A 88 GNEIVDVMCHATLTHRLMSPNRVPNYNLFVMDEAHFTDPASIAARGYIATKVELGEAAAIFMTATPPGTTDPFPDS--NA 165 (459)
T ss_dssp CCCSEEEEEHHHHHHHHHSCC-CCCCSEEEESSTTCCSHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSCCC--SS
T ss_pred CCcEEEEEchHHHHHHhhccccccCCcEEEEECCccCCchhhHHHHHHHHHhccCCccEEEEEcCCCcchhhhccC--CC
Confidence 0000111000 0000 0 5789999999998654322111 11
Q ss_pred ceEEEecccccccCccceeEEEEccccchhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCC
Q psy9620 256 YIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKS 335 (453)
Q Consensus 256 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~ 335 (453)
++.. +. .... ..+...+..++.. ..+++||||+++..|+.+++.|...++.+..+|+.
T Consensus 166 pi~~-~~--------------~~~~-~~~~~~~~~~l~~----~~~~~LVF~~s~~~~~~l~~~L~~~g~~v~~lh~~-- 223 (459)
T 2z83_A 166 PIHD-LQ--------------DEIP-DRAWSSGYEWITE----YAGKTVWFVASVKMGNEIAMCLQRAGKKVIQLNRK-- 223 (459)
T ss_dssp CEEE-EE--------------CCCC-SSCCSSCCHHHHH----CCSCEEEECSCHHHHHHHHHHHHHTTCCEEEESTT--
T ss_pred CeEE-ec--------------ccCC-cchhHHHHHHHHh----cCCCEEEEeCChHHHHHHHHHHHhcCCcEEecCHH--
Confidence 2111 10 0001 1111122233332 25799999999999999999999999999999995
Q ss_pred HHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEEE--------------------cCCCCChhHHHHhhhcccCCC
Q psy9620 336 QQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVIN--------------------FDYPNNSEDYIHRIGRTGRSD 395 (453)
Q Consensus 336 ~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~--------------------~d~p~s~~~y~qr~GRagR~g 395 (453)
+|..+++.|++|+.+|||||+++++|||+|+ ++||+ ||.|.+.++|+||+|||||.|
T Consensus 224 --~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g 300 (459)
T 2z83_A 224 --SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNP 300 (459)
T ss_dssp --CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCT
T ss_pred --HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCcccccccccccccccccccCCCCCHHHHHHhccccCCCC
Confidence 7888999999999999999999999999999 99999 779999999999999999998
Q ss_pred C-cceEEEEEcCC
Q psy9620 396 N-TGTSYTFFTQQ 407 (453)
Q Consensus 396 ~-~g~~~~~~~~~ 407 (453)
. +|.|++|+++.
T Consensus 301 ~~~G~~~~~~~~~ 313 (459)
T 2z83_A 301 NQVGDEYHYGGAT 313 (459)
T ss_dssp TCCCEEEEECSCC
T ss_pred CCCCeEEEEEccc
Confidence 7 89999999875
|
| >2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-33 Score=282.72 Aligned_cols=250 Identities=24% Similarity=0.270 Sum_probs=183.6
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhcCCCC
Q psy9620 135 RPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGSSTY 214 (453)
Q Consensus 135 ~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~~~~~ 214 (453)
.|+|+|.++++.+++++++++++|||+|||++|++++... +.++|||+|+++|+.|+.+.+.++ +
T Consensus 93 ~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~-----------~~~~Lvl~P~~~L~~Q~~~~~~~~----~ 157 (472)
T 2fwr_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL-----------STPTLIVVPTLALAEQWKERLGIF----G 157 (472)
T ss_dssp CBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH-----------CSCEEEEESSHHHHHHHHHHGGGG----C
T ss_pred CcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc-----------CCCEEEEECCHHHHHHHHHHHHhC----C
Confidence 8999999999999999999999999999999999887753 345999999999999999999885 4
Q ss_pred ce-EEEEeCCccCCCC-------------------------------------------CCceEEEEeccCcH-------
Q psy9620 215 LR-STCVYGGASKGPQ-------------------------------------------PDRQVLMWSATWPR------- 243 (453)
Q Consensus 215 ~~-~~~~~gg~~~~~~-------------------------------------------~~~q~v~~SAT~~~------- 243 (453)
++ +..+.|+...... ...+++++|||+..
T Consensus 158 ~~~v~~~~g~~~~~~~Ivv~T~~~l~~~~~~~~~~~~liIvDEaH~~~~~~~~~~~~~~~~~~~l~lSATp~~~~~~~~~ 237 (472)
T 2fwr_A 158 EEYVGEFSGRIKELKPLTVSTYDSAYVNAEKLGNRFMLLIFDEVHHLPAESYVQIAQMSIAPFRLGLTATFEREDGRHEI 237 (472)
T ss_dssp GGGEEEBSSSCBCCCSEEEEEHHHHHHTHHHHTTTCSEEEEETGGGTTSTTTHHHHHTCCCSEEEEEESCCCCTTSGGGS
T ss_pred CcceEEECCCcCCcCCEEEEEcHHHHHHHHHhcCCCCEEEEECCcCCCChHHHHHHHhcCCCeEEEEecCccCCCCHHHH
Confidence 66 7776666544322 56789999999862
Q ss_pred ------------HHHHHHHHhhccceE--EEecc--ccc---------------------ccCccceeEEE---------
Q psy9620 244 ------------EVQKLAEDFLDSYIQ--INIGS--LTL---------------------SANHNIQQVVE--------- 277 (453)
Q Consensus 244 ------------~~~~~~~~~~~~~~~--~~~~~--~~~---------------------~~~~~i~~~~~--------- 277 (453)
...++...++..+.. +.+.. ... .....+.+.+.
T Consensus 238 l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (472)
T 2fwr_A 238 LKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAEDFNKIVMASGYDERAY 317 (472)
T ss_dssp HHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCCSSSTTTTTTTCCSSSSS
T ss_pred HHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccchhhHHHHHHHhccCHHHH
Confidence 122222222222211 11100 000 00000000000
Q ss_pred ------------EccccchhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHH
Q psy9620 278 ------------VCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKE 345 (453)
Q Consensus 278 ------------~~~~~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~ 345 (453)
.+....|...+.+++.. ....++||||+++..++.+++.|. +..+|++++..+|..++++
T Consensus 318 ~~~~~~~~~~~~~~~~~~k~~~l~~~l~~---~~~~k~lvF~~~~~~~~~l~~~l~-----~~~~~g~~~~~~R~~~~~~ 389 (472)
T 2fwr_A 318 EALRAWEEARRIAFNSKNKIRKLREILER---HRKDKIIIFTRHNELVYRISKVFL-----IPAITHRTSREEREEILEG 389 (472)
T ss_dssp TTTHHHHHHHHHHHSCSHHHHHHHHHHHH---TSSSCBCCBCSCHHHHHHHHHHTT-----CCBCCSSSCSHHHHTHHHH
T ss_pred HHHHHHHHHHHHhhcChHHHHHHHHHHHh---CCCCcEEEEECCHHHHHHHHHHhC-----cceeeCCCCHHHHHHHHHH
Confidence 01112233444555544 346799999999999999999883 5678999999999999999
Q ss_pred HhcCCCcEEEEeccCccCCCCCCCcEEEEcCCCCChhHHHHhhhcccCCCCc-c--eEEEEEcCC
Q psy9620 346 FRNGRAGILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNT-G--TSYTFFTQQ 407 (453)
Q Consensus 346 f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~-g--~~~~~~~~~ 407 (453)
|++|+.+|||||+++++|+|+|++++||++|.|.+...|+||+||+||.|+. + .+|.|+++.
T Consensus 390 F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~ 454 (472)
T 2fwr_A 390 FRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISRG 454 (472)
T ss_dssp HHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEECS
T ss_pred HhCCCCCEEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEEEEEeCC
Confidence 9999999999999999999999999999999999999999999999999843 3 445566554
|
| >2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-32 Score=274.14 Aligned_cols=216 Identities=17% Similarity=0.218 Sum_probs=155.8
Q ss_pred cCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhcCCCCceEEEEeCCccCC-
Q psy9620 149 SGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGSSTYLRSTCVYGGASKG- 227 (453)
Q Consensus 149 ~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~- 227 (453)
+++++|+++|||||||++|++|++..+.. .++++||++||++||.|+++.+.. +.+....+.....
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~-------~g~~~lvl~Pt~~La~Q~~~~~~~------~~v~~~~~~~~~~~ 67 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVK-------KRLRTVILAPTRVVASEMYEALRG------EPIRYMTPAVQSER 67 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHH-------TTCCEEEEESSHHHHHHHHHHTTT------SCEEEC--------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHh-------CCCCEEEECcHHHHHHHHHHHhCC------CeEEEEecCccccC
Confidence 37899999999999999999999966654 356799999999999999887752 2222222210000
Q ss_pred ------------------------CC-----------------------------CCceEEEEeccCcHHHHHHHHHhhc
Q psy9620 228 ------------------------PQ-----------------------------PDRQVLMWSATWPREVQKLAEDFLD 254 (453)
Q Consensus 228 ------------------------~~-----------------------------~~~q~v~~SAT~~~~~~~~~~~~~~ 254 (453)
.. ...|+++||||+++.+..+..
T Consensus 68 ~~~~~~~~~~~~~l~~~l~~~~~~~~l~~vViDEaH~~~~~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~~~~~~~---- 143 (431)
T 2v6i_A 68 TGNEIVDFMCHSTFTMKLLQGVRVPNYNLYIMDEAHFLDPASVAARGYIETRVSMGDAGAIFMTATPPGTTEAFPP---- 143 (431)
T ss_dssp -CCCSEEEEEHHHHHHHHHHTCCCCCCSEEEEESTTCCSHHHHHHHHHHHHHHHTTSCEEEEEESSCTTCCCSSCC----
T ss_pred CCCceEEEEchHHHHHHHhcCccccCCCEEEEeCCccCCccHHHHHHHHHHHhhCCCCcEEEEeCCCCcchhhhcC----
Confidence 00 478999999999864221110
Q ss_pred cceEEEecccccccCccceeEEEEccccchhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCC
Q psy9620 255 SYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDK 334 (453)
Q Consensus 255 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~ 334 (453)
. ...+....... ...+...+..++.. ..+++||||+++++++.+++.|...++.+..+||+
T Consensus 144 ~-------------~~~i~~~~~~~-~~~~~~~~~~~l~~----~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~- 204 (431)
T 2v6i_A 144 S-------------NSPIIDEETRI-PDKAWNSGYEWITE----FDGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRK- 204 (431)
T ss_dssp C-------------SSCCEEEECCC-CSSCCSSCCHHHHS----CSSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTT-
T ss_pred C-------------CCceeeccccC-CHHHHHHHHHHHHc----CCCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCc-
Confidence 0 00111000001 11122223333332 35689999999999999999999999999999997
Q ss_pred CHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcE-----------------EEEcCCCCChhHHHHhhhcccCCCCc
Q psy9620 335 SQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKF-----------------VINFDYPNNSEDYIHRIGRTGRSDNT 397 (453)
Q Consensus 335 ~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~-----------------VI~~d~p~s~~~y~qr~GRagR~g~~ 397 (453)
+|..++++|++|+.+|||||+++++|||+| +.+ ||+++.|.+.++|+||+||+||.+..
T Consensus 205 ---~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~ 280 (431)
T 2v6i_A 205 ---TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPEK 280 (431)
T ss_dssp ---THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTTC
T ss_pred ---cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceecccceeecccccCCHHHHHHhhhccCCCCCC
Confidence 688899999999999999999999999999 554 67889999999999999999999854
Q ss_pred -ceEEEEE
Q psy9620 398 -GTSYTFF 404 (453)
Q Consensus 398 -g~~~~~~ 404 (453)
+.+++|.
T Consensus 281 ~~~~~~~~ 288 (431)
T 2v6i_A 281 LGDIYAYS 288 (431)
T ss_dssp CCCEEEEC
T ss_pred CCeEEEEc
Confidence 4445544
|
| >3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=4.2e-31 Score=266.50 Aligned_cols=173 Identities=15% Similarity=0.184 Sum_probs=133.9
Q ss_pred CceEEEEeccCcHHHHHHHHHhhccceEEEecccccccCccceeEEEEccccchhhhHHHHHHhhhcCCCCcEEEEEcch
Q psy9620 231 DRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETK 310 (453)
Q Consensus 231 ~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~lVF~~s~ 310 (453)
-.++..||+|...+..++.+.|..+.+ .+.... +......+...+....+|...+...+..... ...++||||+|+
T Consensus 409 Y~kL~GMTGTa~te~~Ef~~iY~l~vv--~IPtnk-p~~R~d~~d~vy~t~~eK~~al~~~I~~~~~-~gqpVLVFt~S~ 484 (822)
T 3jux_A 409 YEKLAGMTGTAKTEESEFVQVYGMEVV--VIPTHK-PMIRKDHDDLVFRTQKEKYEKIVEEIEKRYK-KGQPVLVGTTSI 484 (822)
T ss_dssp SSEEEEEESSCGGGHHHHHHHSCCCEE--ECCCSS-CCCCEECCCEEESSHHHHHHHHHHHHHHHHH-HTCCEEEEESSH
T ss_pred hhHHeEECCCCchHHHHHHHHhCCeEE--EECCCC-CcceeecCcEEEecHHHHHHHHHHHHHHHhh-CCCCEEEEECCH
Confidence 457899999999888777766654433 222211 1111112234455666777777777765422 356999999999
Q ss_pred hHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCC--------CCcEEEEcCCCCChh
Q psy9620 311 RKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVD--------DVKFVINFDYPNNSE 382 (453)
Q Consensus 311 ~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip--------~v~~VI~~d~p~s~~ 382 (453)
..++.|+..|...++++..+|++..+.++..+...++.| .|+|||++++||+||+ +..+||++++|.+..
T Consensus 485 e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmAgRGtDI~lg~~V~~~GglhVInte~Pes~r 562 (822)
T 3jux_A 485 EKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATNMAGRGTDIKLGPGVAELGGLCIIGTERHESRR 562 (822)
T ss_dssp HHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEETTTTTTCCCCCCTTTTTTTSCEEEESSCCSSHH
T ss_pred HHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcchhhCCcCccCCcchhhcCCCEEEecCCCCCHH
Confidence 999999999999999999999986555555555556555 6999999999999998 566999999999999
Q ss_pred HHHHhhhcccCCCCcceEEEEEcCCCh
Q psy9620 383 DYIHRIGRTGRSDNTGTSYTFFTQQNS 409 (453)
Q Consensus 383 ~y~qr~GRagR~g~~g~~~~~~~~~~~ 409 (453)
.|+||+|||||.|.+|.+++|++.+|.
T Consensus 563 ~y~qriGRTGRqG~~G~a~~fvsleD~ 589 (822)
T 3jux_A 563 IDNQLRGRAGRQGDPGESIFFLSLEDD 589 (822)
T ss_dssp HHHHHHTTSSCSSCCCEEEEEEETTSH
T ss_pred HHHHhhCccccCCCCeeEEEEechhHH
Confidence 999999999999999999999998873
|
| >3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ... | Back alignment and structure |
|---|
Probab=99.98 E-value=2.9e-33 Score=286.32 Aligned_cols=230 Identities=21% Similarity=0.202 Sum_probs=164.8
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhcCCCC
Q psy9620 135 RPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGSSTY 214 (453)
Q Consensus 135 ~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~~~~~ 214 (453)
.+++.|.++++.+.++++++++||||||||++|.+|++. .+.++||++|||+||.|+++.+.+.. +
T Consensus 217 P~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~-----------~g~~vLVl~PTReLA~Qia~~l~~~~---g 282 (666)
T 3o8b_A 217 PVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAA-----------QGYKVLVLNPSVAATLGFGAYMSKAH---G 282 (666)
T ss_dssp CSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHH-----------TTCCEEEEESCHHHHHHHHHHHHHHH---S
T ss_pred CcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHH-----------CCCeEEEEcchHHHHHHHHHHHHHHh---C
Confidence 445566666666778899999999999999999998875 24479999999999999998876653 2
Q ss_pred ceEEEEeCCccCCCC-------------------------------------------------CCce--EEEEeccCcH
Q psy9620 215 LRSTCVYGGASKGPQ-------------------------------------------------PDRQ--VLMWSATWPR 243 (453)
Q Consensus 215 ~~~~~~~gg~~~~~~-------------------------------------------------~~~q--~v~~SAT~~~ 243 (453)
..+...+|+...... ..+| ++++|||++.
T Consensus 283 ~~vg~~vG~~~~~~~~~IlV~TPGrLl~~~~l~l~~l~~lVlDEAH~l~~~~~~~l~~Il~~l~~~~~~llil~SAT~~~ 362 (666)
T 3o8b_A 283 IDPNIRTGVRTITTGAPVTYSTYGKFLADGGCSGGAYDIIICDECHSTDSTTILGIGTVLDQAETAGARLVVLATATPPG 362 (666)
T ss_dssp CCCEEECSSCEECCCCSEEEEEHHHHHHTTSCCTTSCSEEEETTTTCCSHHHHHHHHHHHHHTTTTTCSEEEEEESSCTT
T ss_pred CCeeEEECcEeccCCCCEEEECcHHHHhCCCcccCcccEEEEccchhcCccHHHHHHHHHHhhhhcCCceEEEECCCCCc
Confidence 233333443221111 2334 7778999886
Q ss_pred HHHHHHHHhhccceEEEecccccccCccceeEEEEccccchhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhc
Q psy9620 244 EVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNY 323 (453)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~ 323 (453)
.+. ...+....+.. .... .+........ +. ....+++||||++++.++.+++.|.+.
T Consensus 363 ~i~------~~~p~i~~v~~---~~~~----~i~~~~~~~~-------l~---~~~~~~vLVFv~Tr~~ae~la~~L~~~ 419 (666)
T 3o8b_A 363 SVT------VPHPNIEEVAL---SNTG----EIPFYGKAIP-------IE---AIRGGRHLIFCHSKKKCDELAAKLSGL 419 (666)
T ss_dssp CCC------CCCTTEEEEEC---BSCS----SEEETTEEEC-------GG---GSSSSEEEEECSCHHHHHHHHHHHHTT
T ss_pred ccc------cCCcceEEEee---cccc----hhHHHHhhhh-------hh---hccCCcEEEEeCCHHHHHHHHHHHHhC
Confidence 311 01111111000 0000 0111110000 11 124679999999999999999999999
Q ss_pred CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEE----------EcC-----------CCCChh
Q psy9620 324 GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVI----------NFD-----------YPNNSE 382 (453)
Q Consensus 324 ~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI----------~~d-----------~p~s~~ 382 (453)
++.+..+||+|++.+ |+++..+|||||+++++|||+| |++|| ||| .|.+.+
T Consensus 420 g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~~~~~P~s~~ 491 (666)
T 3o8b_A 420 GINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAV 491 (666)
T ss_dssp TCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEEEEEEECBHH
T ss_pred CCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCcccccccccccccccccccccCcCCHH
Confidence 999999999999875 4566779999999999999997 99988 677 899999
Q ss_pred HHHHhhhcccCCCCcceEEEEEcCCChHH
Q psy9620 383 DYIHRIGRTGRSDNTGTSYTFFTQQNSRQ 411 (453)
Q Consensus 383 ~y~qr~GRagR~g~~g~~~~~~~~~~~~~ 411 (453)
+|+||+||+|| +.+|. ++|+++.+...
T Consensus 492 syiQRiGRtGR-g~~G~-i~lvt~~e~~~ 518 (666)
T 3o8b_A 492 SRSQRRGRTGR-GRRGI-YRFVTPGERPS 518 (666)
T ss_dssp HHHHHHTTBCS-SSCEE-EEESCCCCBCS
T ss_pred HHHHHhccCCC-CCCCE-EEEEecchhhc
Confidence 99999999999 89999 99998876544
|
| >2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.98 E-value=1.7e-31 Score=235.51 Aligned_cols=181 Identities=38% Similarity=0.544 Sum_probs=147.9
Q ss_pred HHhhccceEEEecccccccCccceeEEEEccccchhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEE
Q psy9620 250 EDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVG 329 (453)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~ 329 (453)
..|+.+|..+.+.... ....++.+.+..+...+|...|.+++.. ...++||||+++..++.++..|...++.+..
T Consensus 9 ~~~~~~p~~i~v~~~~-~~~~~i~q~~~~~~~~~K~~~L~~~l~~----~~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~ 83 (191)
T 2p6n_A 9 SGVDLGTENLYFQSMG-AASLDVIQEVEYVKEEAKMVYLLECLQK----TPPPVLIFAEKKADVDAIHEYLLLKGVEAVA 83 (191)
T ss_dssp --------------------CCSEEEEEECCGGGHHHHHHHHHTT----SCSCEEEECSCHHHHHHHHHHHHHHTCCEEE
T ss_pred ccccCCCEEEEECCCC-CCCcCceEEEEEcChHHHHHHHHHHHHh----CCCCEEEEECCHHHHHHHHHHHHHcCCcEEE
Confidence 4677888888876655 4557889999888888888777777654 2468999999999999999999999999999
Q ss_pred EcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcCC-C
Q psy9620 330 IHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQ-N 408 (453)
Q Consensus 330 ~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~-~ 408 (453)
+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++||+||+|.+..+|+||+||+||.|++|.|++|+++. +
T Consensus 84 lhg~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~~~ 163 (191)
T 2p6n_A 84 IHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACD 163 (191)
T ss_dssp ECTTSCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTTSC
T ss_pred EeCCCCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcCchh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999986 7
Q ss_pred hHHHHHHHHHHHhcCCCCChHHHHHHh
Q psy9620 409 SRQAKDLIDVLTESNHPVDPKLSALAS 435 (453)
Q Consensus 409 ~~~~~~l~~~l~~~~~~v~~~l~~~~~ 435 (453)
...++.+.+.++...+++|++|.++++
T Consensus 164 ~~~~~~l~~~l~~~~~~~p~~l~~~~~ 190 (191)
T 2p6n_A 164 ESVLMDLKALLLEAKQKVPPVLQVLHC 190 (191)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHSTTC
T ss_pred HHHHHHHHHHHHHccCcCCHHHHhhcC
Confidence 888999999999999999999988764
|
| >2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-30 Score=229.46 Aligned_cols=168 Identities=44% Similarity=0.711 Sum_probs=143.2
Q ss_pred ccCccceeEEEEccccchhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHH
Q psy9620 267 SANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEF 346 (453)
Q Consensus 267 ~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f 346 (453)
....++.+.+..+...+|...|.+++... ....++||||+++..++.++..|...++.+..+||+|++.+|..+++.|
T Consensus 15 ~~~~~i~q~~~~v~~~~K~~~L~~ll~~~--~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f 92 (185)
T 2jgn_A 15 STSENITQKVVWVEESDKRSFLLDLLNAT--GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQF 92 (185)
T ss_dssp -CCTTEEEEEEECCGGGHHHHHHHHHHHC---CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHH
T ss_pred CCCCCceEEEEEeCcHHHHHHHHHHHHhc--CCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHH
Confidence 44578899999998888988888888764 2467999999999999999999999999999999999999999999999
Q ss_pred hcCCCcEEEEeccCccCCCCCCCcEEEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcCCChHHHHHHHHHHHhcCCCC
Q psy9620 347 RNGRAGILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDLIDVLTESNHPV 426 (453)
Q Consensus 347 ~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~v 426 (453)
++|+.+|||||+++++|+|+|++++||+||+|.+..+|+||+||+||.|+.|.|++|+++.+...++++.+.+....+++
T Consensus 93 ~~g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 172 (185)
T 2jgn_A 93 RSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEV 172 (185)
T ss_dssp HHTSSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGGGGGGHHHHHHHHHHTTCCC
T ss_pred HcCCCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchhhHHHHHHHHHHHHhccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHhh
Q psy9620 427 DPKLSALASR 436 (453)
Q Consensus 427 ~~~l~~~~~~ 436 (453)
|++|.+++..
T Consensus 173 ~~~l~~~a~~ 182 (185)
T 2jgn_A 173 PSWLENMAYE 182 (185)
T ss_dssp CHHHHHHHC-
T ss_pred CHHHHHHHHH
Confidence 9999999864
|
| >3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.3e-30 Score=266.78 Aligned_cols=234 Identities=21% Similarity=0.202 Sum_probs=167.1
Q ss_pred HHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhcCCCCceEEEEeC
Q psy9620 143 GWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGSSTYLRSTCVYG 222 (453)
Q Consensus 143 ~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g 222 (453)
.....+++++++++||||||||+ +++..+... +.+||++|||+||.|+++.+.++ ++++..++|
T Consensus 148 p~ar~l~rk~vlv~apTGSGKT~----~al~~l~~~--------~~gl~l~PtR~LA~Qi~~~l~~~----g~~v~lltG 211 (677)
T 3rc3_A 148 PDARAMQRKIIFHSGPTNSGKTY----HAIQKYFSA--------KSGVYCGPLKLLAHEIFEKSNAA----GVPCDLVTG 211 (677)
T ss_dssp HHHHTSCCEEEEEECCTTSSHHH----HHHHHHHHS--------SSEEEEESSHHHHHHHHHHHHHT----TCCEEEECS
T ss_pred HHHHhcCCCEEEEEcCCCCCHHH----HHHHHHHhc--------CCeEEEeCHHHHHHHHHHHHHhc----CCcEEEEEC
Confidence 33455689999999999999997 444444432 23699999999999999999886 456666666
Q ss_pred CccCCCC---------------------------------------------------CCceEEEEeccCcHHHHHHHHH
Q psy9620 223 GASKGPQ---------------------------------------------------PDRQVLMWSATWPREVQKLAED 251 (453)
Q Consensus 223 g~~~~~~---------------------------------------------------~~~q~v~~SAT~~~~~~~~~~~ 251 (453)
+...... ...+++++|||. +.+..++..
T Consensus 212 ~~~~iv~TpGr~~~il~~T~e~~~l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~~~i~il~~SAT~-~~i~~l~~~ 290 (677)
T 3rc3_A 212 EERVTVQPNGKQASHVSCTVEMCSVTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPAAI-DLVMELMYT 290 (677)
T ss_dssp SCEECCSTTCCCCSEEEEEGGGCCSSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCCEEEEEEEECGGGH-HHHHHHHHH
T ss_pred CeeEEecCCCcccceeEecHhHhhhcccCCEEEEecceecCCccchHHHHHHHHccCccceEEEeccchH-HHHHHHHHh
Confidence 6433110 346788888884 334444443
Q ss_pred hhccceEEEecccccccCccceeEEEEccccchhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEc
Q psy9620 252 FLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIH 331 (453)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h 331 (453)
.. ..+.+... . ..... ... .. .+..+..+ ....||||+++++++.+++.|...++.+..+|
T Consensus 291 ~~-~~~~v~~~--~--r~~~l----~~~-----~~-~l~~l~~~----~~g~iIf~~s~~~ie~la~~L~~~g~~v~~lH 351 (677)
T 3rc3_A 291 TG-EEVEVRDY--K--RLTPI----SVL-----DH-ALESLDNL----RPGDCIVCFSKNDIYSVSRQIEIRGLESAVIY 351 (677)
T ss_dssp HT-CCEEEEEC--C--CSSCE----EEC-----SS-CCCSGGGC----CTTEEEECSSHHHHHHHHHHHHHTTCCCEEEC
T ss_pred cC-CceEEEEe--e--ecchH----HHH-----HH-HHHHHHhc----CCCCEEEEcCHHHHHHHHHHHHhcCCCeeeee
Confidence 32 22222110 0 00000 000 00 00111111 34568999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhc--CCCcEEEEeccCccCCCCCCCcEEEEcCC--------------CCChhHHHHhhhcccCCC
Q psy9620 332 GDKSQQERDYVLKEFRN--GRAGILVATDVAARGLDVDDVKFVINFDY--------------PNNSEDYIHRIGRTGRSD 395 (453)
Q Consensus 332 ~~~~~~~r~~~~~~f~~--g~~~vLvaT~~~~~GiDip~v~~VI~~d~--------------p~s~~~y~qr~GRagR~g 395 (453)
|+|++.+|..+++.|++ |+.+|||||+++++|||+ +|++||++++ |.+.++|+||+|||||.|
T Consensus 352 G~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g 430 (677)
T 3rc3_A 352 GSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFS 430 (677)
T ss_dssp TTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC-----------CBCCHHHHHHHHTTBTCTT
T ss_pred ccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCccccccccCCccccccCCHHHHHHHhcCCCCCC
Confidence 99999999999999999 899999999999999999 9999999999 779999999999999998
Q ss_pred Cc---ceEEEEEcCCChHHHHH
Q psy9620 396 NT---GTSYTFFTQQNSRQAKD 414 (453)
Q Consensus 396 ~~---g~~~~~~~~~~~~~~~~ 414 (453)
.. |.|+.++ +++...+++
T Consensus 431 ~~g~~G~v~~l~-~~d~~~~~~ 451 (677)
T 3rc3_A 431 SRFKEGEVTTMN-HEDLSLLKE 451 (677)
T ss_dssp SSCSSEEEEESS-TTHHHHHHH
T ss_pred CCCCCEEEEEEe-cchHHHHHH
Confidence 64 6665554 334333333
|
| >3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.9e-29 Score=261.76 Aligned_cols=270 Identities=16% Similarity=0.155 Sum_probs=160.0
Q ss_pred CCCHHHHHHHHHHhc----C-CcEEEEecCCCcchhhhhHHHHHHhhhcC--CCCCCCCcEEEEEcCCHHHHHHHH-HHH
Q psy9620 135 RPTPIQAQGWPIAMS----G-SNMVGVAQTGSGKTLAYMLPAIVHINHQS--QLKPGDGPIVLVLAPTRELAQQIQ-EVA 206 (453)
Q Consensus 135 ~~~~~Q~~~i~~i~~----g-~d~li~a~TGsGKT~~~~l~~l~~~~~~~--~~~~~~~~~vlil~Ptr~La~q~~-~~~ 206 (453)
.|+++|.++++.+++ + ++++++++||+|||++++.. +..+.... .......+++|||+||++|+.|+. +.+
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~-~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~ 256 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQI-SWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTF 256 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHH-HHHHHHTTCCSSCSSSCCCEEEEEC-----------CC
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHH-HHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHH
Confidence 799999999998875 4 66899999999999996544 44443321 011124678999999999999998 777
Q ss_pred HHhcCCC----------CceEEEEeCCcc-C-----------CCC----------------------------CCceEEE
Q psy9620 207 RDFGSST----------YLRSTCVYGGAS-K-----------GPQ----------------------------PDRQVLM 236 (453)
Q Consensus 207 ~~~~~~~----------~~~~~~~~gg~~-~-----------~~~----------------------------~~~q~v~ 236 (453)
+.++... ...+.+..-+.- . ... +..++++
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~~~~~~~il~~~~~~~~l~ 336 (590)
T 3h1t_A 257 TPFGDARHKIEGGKVVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARDNSNWREILEYFEPAFQIG 336 (590)
T ss_dssp TTTCSSEEECCC--CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC---------CHHHHHHSTTSEEEE
T ss_pred HhcchhhhhhhccCCCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccchHHHHHHHHhCCcceEEE
Confidence 6654211 111111110000 0 000 4578999
Q ss_pred EeccCcHHHHHHHHHhhccceEE------------------Eeccccc----ccC--------ccceeEEEEccc-----
Q psy9620 237 WSATWPREVQKLAEDFLDSYIQI------------------NIGSLTL----SAN--------HNIQQVVEVCAE----- 281 (453)
Q Consensus 237 ~SAT~~~~~~~~~~~~~~~~~~~------------------~~~~~~~----~~~--------~~i~~~~~~~~~----- 281 (453)
+|||+..........++..++.. .+..... ... ..+.........
T Consensus 337 lTATP~~~~~~~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (590)
T 3h1t_A 337 MTATPLREDNRDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGREIPDGEYQTKDFERVI 416 (590)
T ss_dssp EESSCSCTTTHHHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEEETTCC-----------------------CCSHHHHH
T ss_pred eccccccccchhHHHHcCCceEecCHHHHhhCCccCCcEEEEeeeeeeccccccccccccccccccccccCCHHHhhhHh
Confidence 99998743332223333322211 1100000 000 000000000000
Q ss_pred --cchhhhHHHHHHhhhc--CCCCcEEEEEcchhHHHHHHHHHHhcCC--------eEEEEcCCCCHHHHHHHHHHHhcC
Q psy9620 282 --HEKENKLFGLLNDISS--KDENKTIIFAETKRKVDKITKSIQNYGW--------AAVGIHGDKSQQERDYVLKEFRNG 349 (453)
Q Consensus 282 --~~k~~~l~~ll~~~~~--~~~~~~lVF~~s~~~~~~l~~~L~~~~~--------~~~~~h~~~~~~~r~~~~~~f~~g 349 (453)
..+...+...+..+.. ....++||||+++..|+.+++.|...+. .+..+||+++. +|..++++|+++
T Consensus 417 ~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~-~r~~~l~~F~~~ 495 (590)
T 3h1t_A 417 ALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGK-IGKGHLSRFQEL 495 (590)
T ss_dssp HHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHH-HHHHHHHHHHCT
T ss_pred cChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChH-HHHHHHHHHhCC
Confidence 0111122222222111 2347999999999999999999987543 27889998764 799999999998
Q ss_pred CCc---EEEEeccCccCCCCCCCcEEEEcCCCCChhHHHHhhhcccCCCC--cceEEEEEcC
Q psy9620 350 RAG---ILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDN--TGTSYTFFTQ 406 (453)
Q Consensus 350 ~~~---vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~--~g~~~~~~~~ 406 (453)
+.+ |||||+++++|||+|++++||+++.|.|...|+||+||++|.+. ....+++++-
T Consensus 496 ~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~~~~k~~~~I~D~ 557 (590)
T 3h1t_A 496 ETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLREDYGKLWFNIIDY 557 (590)
T ss_dssp TCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBGGGTBSCEEEEEC
T ss_pred CCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCccCCCCEEEEEec
Confidence 876 88999999999999999999999999999999999999999875 2334444443
|
| >2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.96 E-value=1e-28 Score=212.56 Aligned_cols=152 Identities=36% Similarity=0.594 Sum_probs=140.7
Q ss_pred cCccceeEEEEccccchhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHh
Q psy9620 268 ANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFR 347 (453)
Q Consensus 268 ~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~ 347 (453)
...++.+.+..+...+|...|..++... ...++||||+++..++.+++.|...++.+..+||+|++.+|..+++.|+
T Consensus 6 ~~~~i~~~~~~~~~~~K~~~L~~ll~~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~ 82 (163)
T 2hjv_A 6 TTRNIEHAVIQVREENKFSLLKDVLMTE---NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFK 82 (163)
T ss_dssp CCCCEEEEEEECCGGGHHHHHHHHHHHH---CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHH
T ss_pred CcccceEEEEECChHHHHHHHHHHHHhc---CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHH
Confidence 3456888888888888988888888764 4569999999999999999999999999999999999999999999999
Q ss_pred cCCCcEEEEeccCccCCCCCCCcEEEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcCCChHHHHHHHHHHHhc
Q psy9620 348 NGRAGILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDLIDVLTES 422 (453)
Q Consensus 348 ~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~ 422 (453)
+|+.+|||||+++++|+|+|++++||+||+|.+..+|+||+||+||.|++|.|++|+++.+...++.+.+.+...
T Consensus 83 ~g~~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~ 157 (163)
T 2hjv_A 83 RGEYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEEYIGFE 157 (163)
T ss_dssp TTSCSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGGHHHHHHHHHHHTSC
T ss_pred cCCCeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHHHHHHHHHHHHHHCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999988888776544
|
| >1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.96 E-value=2.6e-29 Score=216.81 Aligned_cols=159 Identities=36% Similarity=0.615 Sum_probs=139.4
Q ss_pred cceeEEEEccccc-hhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcC
Q psy9620 271 NIQQVVEVCAEHE-KENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNG 349 (453)
Q Consensus 271 ~i~~~~~~~~~~~-k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g 349 (453)
++++.+..+...+ |...|.+++... ...++||||+++..++.++..|...++.+..+|++|++.+|..+++.|++|
T Consensus 3 ~i~~~~~~~~~~~~K~~~l~~ll~~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g 79 (165)
T 1fuk_A 3 GIKQFYVNVEEEEYKYECLTDLYDSI---SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSG 79 (165)
T ss_dssp -CEEEEEEEESGGGHHHHHHHHHHHT---TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT
T ss_pred CcEEEEEECCcchhHHHHHHHHHHhC---CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcC
Confidence 5677777777666 888888888764 457999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEeccCccCCCCCCCcEEEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcCCChHHHHHHHHHHHhcCCCCChH
Q psy9620 350 RAGILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDLIDVLTESNHPVDPK 429 (453)
Q Consensus 350 ~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~v~~~ 429 (453)
+.+|||||+++++|+|+|++++||+||+|.+..+|+||+||+||.|++|.|++|+++.+...++.+.+.+....+++|..
T Consensus 80 ~~~vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (165)
T 1fuk_A 80 SSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSD 159 (165)
T ss_dssp SCSEEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHHHHSSCCCEECCSC
T ss_pred CCEEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchHHHHHHHHHHHHccCccccCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999988888777777765
Q ss_pred HHH
Q psy9620 430 LSA 432 (453)
Q Consensus 430 l~~ 432 (453)
+.+
T Consensus 160 ~~~ 162 (165)
T 1fuk_A 160 IAT 162 (165)
T ss_dssp CTT
T ss_pred HHh
Confidence 443
|
| >1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.96 E-value=6.9e-29 Score=215.45 Aligned_cols=160 Identities=28% Similarity=0.518 Sum_probs=141.6
Q ss_pred ccceeEEEEccccchhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcC
Q psy9620 270 HNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNG 349 (453)
Q Consensus 270 ~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g 349 (453)
..+.+.+..+...+|...|.+++... ...++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|
T Consensus 4 ~~i~q~~~~~~~~~K~~~L~~ll~~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g 80 (172)
T 1t5i_A 4 HGLQQYYVKLKDNEKNRKLFDLLDVL---EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDF 80 (172)
T ss_dssp -CCEEEEEECCGGGHHHHHHHHHHHS---CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT
T ss_pred CCeEEEEEECChHHHHHHHHHHHHhC---CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCC
Confidence 56788888888888888888888764 456999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEeccCccCCCCCCCcEEEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcCC-ChHHHHHHHHHHHhcCCCCCh
Q psy9620 350 RAGILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQ-NSRQAKDLIDVLTESNHPVDP 428 (453)
Q Consensus 350 ~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~-~~~~~~~l~~~l~~~~~~v~~ 428 (453)
+.+|||||+++++|+|+|++++||+||+|.+..+|+||+||+||.|+.|.+++|+++. +...++.+.+.+....+++|.
T Consensus 81 ~~~vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 160 (172)
T 1t5i_A 81 QRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPD 160 (172)
T ss_dssp SCSEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHHCCCEEECC-
T ss_pred CCcEEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChhHHHHHHHHHHHHhcchhhCCh
Confidence 9999999999999999999999999999999999999999999999999999999875 456778888887777777777
Q ss_pred HHHH
Q psy9620 429 KLSA 432 (453)
Q Consensus 429 ~l~~ 432 (453)
.+..
T Consensus 161 ~~~~ 164 (172)
T 1t5i_A 161 EIDI 164 (172)
T ss_dssp ----
T ss_pred hhch
Confidence 6543
|
| >3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-28 Score=225.52 Aligned_cols=177 Identities=64% Similarity=1.127 Sum_probs=156.6
Q ss_pred CCHHHHHHHHHHcCCeeccc-CCCccccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhh
Q psy9620 88 RSPHEVQAFRDKHQMTLKGN-APNPITEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLA 166 (453)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~-~p~p~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~ 166 (453)
.+.+++..++....+.+.+. .|.|+.+|+++++++.+++.+.+.||..|+++|.++|+.+++++|++++||||||||++
T Consensus 3 ~~~~~~~~~~~~~~i~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~ 82 (242)
T 3fe2_A 3 RTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLS 82 (242)
T ss_dssp ---CHHHHHHHHHTEEEESSCCCCCCSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHH
T ss_pred CCHHHHHHHHhcCceEEeCCCCCCccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHH
Confidence 35567889999999999888 89999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhcCCCCceEEEEeCCccCCCC-----------------
Q psy9620 167 YMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGSSTYLRSTCVYGGASKGPQ----------------- 229 (453)
Q Consensus 167 ~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~----------------- 229 (453)
|++|++..+..........++++|||+||++|+.|+.+.++++....++++.+++|+.....+
T Consensus 83 ~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~ 162 (242)
T 3fe2_A 83 YLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGR 162 (242)
T ss_dssp HHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHH
T ss_pred HHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEECHHH
Confidence 999999998876554555688999999999999999999999988788888888887643211
Q ss_pred -------------------------------------------CCceEEEEeccCcHHHHHHHHHhhccceEEEeccc
Q psy9620 230 -------------------------------------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSL 264 (453)
Q Consensus 230 -------------------------------------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~ 264 (453)
+++|+++||||+|+++.++++.++.+++.+.+...
T Consensus 163 l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~l~~~~~i~~~~~ 240 (242)
T 3fe2_A 163 LIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGAL 240 (242)
T ss_dssp HHHHHHHTSCCCTTCCEEEETTHHHHHHTTCHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEEEECC-
T ss_pred HHHHHHcCCCCcccccEEEEeCHHHHhhhCcHHHHHHHHHhCCccceEEEEEeecCHHHHHHHHHHCCCCEEEEecCC
Confidence 57899999999999999999999999998887654
|
| >2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.1e-28 Score=212.25 Aligned_cols=154 Identities=30% Similarity=0.550 Sum_probs=134.3
Q ss_pred CccceeEEEEccccc-hhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHh
Q psy9620 269 NHNIQQVVEVCAEHE-KENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFR 347 (453)
Q Consensus 269 ~~~i~~~~~~~~~~~-k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~ 347 (453)
..++.+.+..+...+ |...|..++... ...++||||+++..++.++..|...++.+..+||+|++.+|..+++.|+
T Consensus 5 ~~~i~q~~~~~~~~~~K~~~L~~ll~~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~ 81 (175)
T 2rb4_A 5 LNNIRQYYVLCEHRKDKYQALCNIYGSI---TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFR 81 (175)
T ss_dssp BCCEEEEEEECSSHHHHHHHHHHHHTTS---CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHH
T ss_pred cCCceEEEEEcCChHhHHHHHHHHHHhC---CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHH
Confidence 457888888887654 777777776653 4579999999999999999999999999999999999999999999999
Q ss_pred cCCCcEEEEeccCccCCCCCCCcEEEEcCCC------CChhHHHHhhhcccCCCCcceEEEEEcCCChHHHHHHHHHHHh
Q psy9620 348 NGRAGILVATDVAARGLDVDDVKFVINFDYP------NNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDLIDVLTE 421 (453)
Q Consensus 348 ~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p------~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~l~~ 421 (453)
+|+.+|||||+++++|+|+|++++||+||+| .+..+|+||+||+||.|+.|.|++|+++.+...++.+.+.+..
T Consensus 82 ~g~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~ 161 (175)
T 2rb4_A 82 DGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQDHFNS 161 (175)
T ss_dssp TTSCSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGGHHHHHHHHHHHTC
T ss_pred cCCCeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccchHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999 9999999999999999999999999999998888888877765
Q ss_pred cCCC
Q psy9620 422 SNHP 425 (453)
Q Consensus 422 ~~~~ 425 (453)
..++
T Consensus 162 ~~~~ 165 (175)
T 2rb4_A 162 SIKQ 165 (175)
T ss_dssp CCEE
T ss_pred cccc
Confidence 4433
|
| >3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-27 Score=259.35 Aligned_cols=134 Identities=19% Similarity=0.269 Sum_probs=114.0
Q ss_pred hhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHh-cCCeEEEEcCCCCHHHHHHHHHHHhcCC--CcEEEEeccC
Q psy9620 284 KENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQN-YGWAAVGIHGDKSQQERDYVLKEFRNGR--AGILVATDVA 360 (453)
Q Consensus 284 k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~-~~~~~~~~h~~~~~~~r~~~~~~f~~g~--~~vLvaT~~~ 360 (453)
|...+..++.. ....++||||+++..++.++..|.. .++.+..+||+|++.+|+.++++|++|+ ++|||||+++
T Consensus 490 K~~~L~~ll~~---~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~v~ 566 (968)
T 3dmq_A 490 RVEWLMGYLTS---HRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIG 566 (968)
T ss_dssp HHHHHHHHHHH---TSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSCCT
T ss_pred HHHHHHHHHHh---CCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEecchh
Confidence 44445555544 3567999999999999999999995 5999999999999999999999999998 9999999999
Q ss_pred ccCCCCCCCcEEEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcCCChHHHHHHHHHHH
Q psy9620 361 ARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDLIDVLT 420 (453)
Q Consensus 361 ~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~l~ 420 (453)
++|||+|++++||+||+|.++..|+||+||++|.|+.+.|+++....+....+.+.+.+.
T Consensus 567 ~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t~ee~i~~~~~ 626 (968)
T 3dmq_A 567 SEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYH 626 (968)
T ss_dssp TCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEEEEETTSHHHHHHHHHH
T ss_pred hcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEEEecCCChHHHHHHHHHH
Confidence 999999999999999999999999999999999999887766655444344444555543
|
| >3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A | Back alignment and structure |
|---|
Probab=99.95 E-value=2.7e-27 Score=212.58 Aligned_cols=148 Identities=32% Similarity=0.551 Sum_probs=132.2
Q ss_pred ceeEEEEccccchhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCC
Q psy9620 272 IQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRA 351 (453)
Q Consensus 272 i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~ 351 (453)
+.+....+....|...|..++... ...++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|+.
T Consensus 6 ~~~~~~~~~~~~k~~~l~~ll~~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~ 82 (212)
T 3eaq_A 6 YEEEAVPAPVRGRLEVLSDLLYVA---SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEV 82 (212)
T ss_dssp BCCEEEECCTTSHHHHHHHHHHHH---CCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSC
T ss_pred eeeeEEeCCHHHHHHHHHHHHHhC---CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCC
Confidence 344455566677888888887653 46799999999999999999999999999999999999999999999999999
Q ss_pred cEEEEeccCccCCCCCCCcEEEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcCCChHHHHHHHHHHHhc
Q psy9620 352 GILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDLIDVLTES 422 (453)
Q Consensus 352 ~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~ 422 (453)
+|||||+++++|||+|++++||+||+|.+..+|+||+||+||.|++|.|++|+++.+...++.+.+.++..
T Consensus 83 ~vlvaT~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~ 153 (212)
T 3eaq_A 83 RVLVATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRR 153 (212)
T ss_dssp CEEEECTTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHSSC
T ss_pred eEEEecChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhcCc
Confidence 99999999999999999999999999999999999999999999999999999999988888887776644
|
| >1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A | Back alignment and structure |
|---|
Probab=99.95 E-value=2.1e-26 Score=234.30 Aligned_cols=135 Identities=17% Similarity=0.206 Sum_probs=105.4
Q ss_pred hhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhc-CCeEEEEcCCCCHHHHHHHHHHHhcC-CCc-EEEEeccCc
Q psy9620 285 ENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNY-GWAAVGIHGDKSQQERDYVLKEFRNG-RAG-ILVATDVAA 361 (453)
Q Consensus 285 ~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~-~~~~~~~h~~~~~~~r~~~~~~f~~g-~~~-vLvaT~~~~ 361 (453)
...+.+++..+.. ...++||||+++..++.++..|... ++.+..+||++++.+|..++++|+++ ..+ +||+|++++
T Consensus 327 ~~~l~~~l~~~~~-~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~ 405 (500)
T 1z63_A 327 MIRTMEIIEEALD-EGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGG 405 (500)
T ss_dssp HHHHHHHHHHHHT-TTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-
T ss_pred HHHHHHHHHHHHc-cCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEeccccc
Confidence 3344455544432 4679999999999999999999885 99999999999999999999999998 555 799999999
Q ss_pred cCCCCCCCcEEEEcCCCCChhHHHHhhhcccCCCCcceE--EEEEcCCChHHHHHHHHHHHhc
Q psy9620 362 RGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTS--YTFFTQQNSRQAKDLIDVLTES 422 (453)
Q Consensus 362 ~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~--~~~~~~~~~~~~~~l~~~l~~~ 422 (453)
+|+|++++++||++|+|+|+..|.|++||++|.|+...+ +.|++.... -..+.+.++..
T Consensus 406 ~Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~ti--ee~i~~~~~~K 466 (500)
T 1z63_A 406 FGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTL--EEKIDQLLAFK 466 (500)
T ss_dssp CCCCCTTCSEEEESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEETTSH--HHHTHHHHTTC
T ss_pred CCCchhhCCEEEEeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCCCH--HHHHHHHHHHH
Confidence 999999999999999999999999999999999877655 445555432 23344444433
|
| >3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-26 Score=218.36 Aligned_cols=149 Identities=32% Similarity=0.547 Sum_probs=131.6
Q ss_pred cceeEEEEccccchhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCC
Q psy9620 271 NIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGR 350 (453)
Q Consensus 271 ~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~ 350 (453)
++.+.+..+...+|...|..++... ...++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|+
T Consensus 2 ~v~~~~i~~~~~~K~~~L~~ll~~~---~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~ 78 (300)
T 3i32_A 2 TYEEEAVPAPVRGRLEVLSDLLYVA---SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGE 78 (300)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHH---CCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTS
T ss_pred ceEEEEEECCHHHHHHHHHHHHHhc---CCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCC
Confidence 3566777778888888888888764 3679999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEeccCccCCCCCCCcEEEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcCCChHHHHHHHHHHHhc
Q psy9620 351 AGILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDLIDVLTES 422 (453)
Q Consensus 351 ~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~ 422 (453)
.+|||||+++++|||+|++++||+||+|.+...|+||+||+||.|++|.|++|+++.+...++.+.+.+...
T Consensus 79 ~~vLVaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~~~~~ 150 (300)
T 3i32_A 79 VRVLVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRR 150 (300)
T ss_dssp CCEEEECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHHHHHTCC
T ss_pred ceEEEEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHHHhCCc
Confidence 999999999999999999999999999999999999999999999999999999999988888877766543
|
| >1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.7e-24 Score=225.50 Aligned_cols=117 Identities=21% Similarity=0.357 Sum_probs=108.5
Q ss_pred CCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEEEcCC-
Q psy9620 299 DENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVINFDY- 377 (453)
Q Consensus 299 ~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~- 377 (453)
...++||||+|+..++.+++.|...++.+..+|+++++.+|..+++.|+.|+++|||||+++++|+|+|+|++||++|.
T Consensus 438 ~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d 517 (664)
T 1c4o_A 438 RGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDAD 517 (664)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTT
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCCc
Confidence 3569999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred ----CCChhHHHHhhhcccCCCCcceEEEEEcCCChHHHHHHH
Q psy9620 378 ----PNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDLI 416 (453)
Q Consensus 378 ----p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~ 416 (453)
|.+..+|+||+|||||. .+|.|++|+++.+....+.+.
T Consensus 518 ~~G~p~s~~~~iQr~GRagR~-~~G~~i~~~~~~~~~~~~~i~ 559 (664)
T 1c4o_A 518 KEGFLRSERSLIQTIGRAARN-ARGEVWLYADRVSEAMQRAIE 559 (664)
T ss_dssp SCSGGGSHHHHHHHHGGGTTS-TTCEEEEECSSCCHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHCccCcC-CCCEEEEEEcCCCHHHHHHHH
Confidence 89999999999999998 489999999987765544443
|
| >3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=1e-25 Score=207.45 Aligned_cols=168 Identities=31% Similarity=0.559 Sum_probs=143.8
Q ss_pred HHHHHHHHcCCeeccc-CCCcccccccc----CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhh
Q psy9620 92 EVQAFRDKHQMTLKGN-APNPITEFAEA----NFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLA 166 (453)
Q Consensus 92 ~~~~~~~~~~~~~~~~-~p~p~~~f~~~----~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~ 166 (453)
++..++..+.+.+.+. .|.|+.+|+++ ++++.+++.+.++||..|+++|.++++.+++++|+++++|||+|||++
T Consensus 3 ~~~~~~~~~~i~~~~~~~p~~~~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~ 82 (245)
T 3dkp_A 3 KINFLRNKHKIHVQGTDLPDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLA 82 (245)
T ss_dssp HHHHHHHHTTEEEESSSCCCCCSSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHH
T ss_pred hHHHHHHhCceEecCCCCCCcccCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHH
Confidence 4677888888988887 89999999987 899999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhcCCCCceEEEEeCCccCCC----------C-------
Q psy9620 167 YMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGSSTYLRSTCVYGGASKGP----------Q------- 229 (453)
Q Consensus 167 ~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~----------~------- 229 (453)
|++|++..+.... ..++++||++||++|+.|+++.+++++...++++..++++..... .
T Consensus 83 ~~l~~l~~l~~~~----~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~ 158 (245)
T 3dkp_A 83 FSIPILMQLKQPA----NKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPN 158 (245)
T ss_dssp HHHHHHHHHCSCC----SSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHH
T ss_pred HHHHHHHHHhhcc----cCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEECHH
Confidence 9999998885422 256789999999999999999999998776666655443321000 0
Q ss_pred --------------------------------------------------CCceEEEEeccCcHHHHHHHHHhhccceEE
Q psy9620 230 --------------------------------------------------PDRQVLMWSATWPREVQKLAEDFLDSYIQI 259 (453)
Q Consensus 230 --------------------------------------------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~ 259 (453)
...|+++||||++.++.++++.++.+++.+
T Consensus 159 ~l~~~l~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~~v~~~~~~~l~~p~~i 238 (245)
T 3dkp_A 159 RLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVISV 238 (245)
T ss_dssp HHHHHHHSSSCSCCCTTCCEEEESSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSCCHHHHHHHHHHSSSCEEE
T ss_pred HHHHHHHhCCCCcccccCcEEEEeChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccCCHHHHHHHHHhCCCCEEE
Confidence 467999999999999999999999999988
Q ss_pred Eecc
Q psy9620 260 NIGS 263 (453)
Q Consensus 260 ~~~~ 263 (453)
.++.
T Consensus 239 ~~~~ 242 (245)
T 3dkp_A 239 SIGA 242 (245)
T ss_dssp EECC
T ss_pred EeCC
Confidence 8765
|
| >2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.88 E-value=9.7e-28 Score=208.00 Aligned_cols=149 Identities=30% Similarity=0.537 Sum_probs=132.1
Q ss_pred cceeEEEEccc-cchhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcC
Q psy9620 271 NIQQVVEVCAE-HEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNG 349 (453)
Q Consensus 271 ~i~~~~~~~~~-~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g 349 (453)
++.+.+..+.. ..|...|.+++.. ....++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|
T Consensus 3 ~i~~~~~~~~~~~~k~~~l~~ll~~---~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g 79 (170)
T 2yjt_D 3 KIHQWYYRADDLEHKTALLVHLLKQ---PEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEG 79 (170)
Confidence 35555666655 6677777777654 2456899999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEeccCccCCCCCCCcEEEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcCCChHHHHHHHHHHHhc
Q psy9620 350 RAGILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDLIDVLTES 422 (453)
Q Consensus 350 ~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~ 422 (453)
+.+|||||+++++|+|+|++++||+||+|.+..+|+||+||+||.|+.|.|++|+++.+...++.+.+.+...
T Consensus 80 ~~~vLvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~ 152 (170)
T 2yjt_D 80 RVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEP 152 (170)
Confidence 9999999999999999999999999999999999999999999999999999999999888887777765543
|
| >1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=99.93 E-value=6.4e-24 Score=221.37 Aligned_cols=120 Identities=18% Similarity=0.277 Sum_probs=104.8
Q ss_pred HHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCc---EEEEeccCccCC
Q psy9620 288 LFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAG---ILVATDVAARGL 364 (453)
Q Consensus 288 l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~---vLvaT~~~~~Gi 364 (453)
+..++..+......++||||+....++.+...|...++.+..+||+++..+|..++++|+++... +||+|+++++||
T Consensus 404 l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Gl 483 (644)
T 1z3i_X 404 LDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGL 483 (644)
T ss_dssp HHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTC
T ss_pred HHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCc
Confidence 44444444333467999999999999999999999999999999999999999999999998764 899999999999
Q ss_pred CCCCCcEEEEcCCCCChhHHHHhhhcccCCCCcce--EEEEEcCC
Q psy9620 365 DVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGT--SYTFFTQQ 407 (453)
Q Consensus 365 Dip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~--~~~~~~~~ 407 (453)
|++++++||+||+|+|+..|.|++||+.|.|+... ++.|++..
T Consensus 484 nl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~ 528 (644)
T 1z3i_X 484 NLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTG 528 (644)
T ss_dssp CCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETT
T ss_pred ccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceEEEEEEECC
Confidence 99999999999999999999999999999987654 55566655
|
| >2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B* | Back alignment and structure |
|---|
Probab=99.92 E-value=2.4e-23 Score=216.84 Aligned_cols=115 Identities=20% Similarity=0.370 Sum_probs=107.9
Q ss_pred CCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEEEcCC-
Q psy9620 299 DENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVINFDY- 377 (453)
Q Consensus 299 ~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~- 377 (453)
...++||||+|+..|+.+++.|...++.+..+|+++++.+|..+++.|++|+++|||||+++++|+|+|+|++||++|.
T Consensus 444 ~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d 523 (661)
T 2d7d_A 444 RNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDAD 523 (661)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTT
T ss_pred cCCeEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCcc
Confidence 3569999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred ----CCChhHHHHhhhcccCCCCcceEEEEEcCCChHHHHH
Q psy9620 378 ----PNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAKD 414 (453)
Q Consensus 378 ----p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~ 414 (453)
|.+..+|+||+||+||. ..|.|++|+++.+....+.
T Consensus 524 ~~G~p~s~~~~iQr~GRagR~-~~G~~i~~~~~~~~~~~~~ 563 (661)
T 2d7d_A 524 KEGFLRSERSLIQTIGRAARN-AEGRVIMYADKITKSMEIA 563 (661)
T ss_dssp CCTTTTSHHHHHHHHHTTTTS-TTCEEEEECSSCCHHHHHH
T ss_pred cccCCCCHHHHHHHhCcccCC-CCCEEEEEEeCCCHHHHHH
Confidence 99999999999999998 7899999999877654443
|
| >3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.3e-24 Score=197.80 Aligned_cols=152 Identities=41% Similarity=0.753 Sum_probs=127.6
Q ss_pred CCCccccccc-cCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCC-CCCC
Q psy9620 108 APNPITEFAE-ANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQL-KPGD 185 (453)
Q Consensus 108 ~p~p~~~f~~-~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~-~~~~ 185 (453)
.|.|+.+|++ +++++.+++++.+.||..|+++|.++++.+++++|+++++|||+|||++|++|++..+...... ....
T Consensus 14 ~p~p~~~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~ 93 (228)
T 3iuy_A 14 IPKPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRN 93 (228)
T ss_dssp CCCCCCSHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC---------C
T ss_pred CCCChhhHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccC
Confidence 7899999999 7999999999999999999999999999999999999999999999999999999887643211 1235
Q ss_pred CcEEEEEcCCHHHHHHHHHHHHHhcCCCCceEEEEeCCccCCCC------------------------------------
Q psy9620 186 GPIVLVLAPTRELAQQIQEVARDFGSSTYLRSTCVYGGASKGPQ------------------------------------ 229 (453)
Q Consensus 186 ~~~vlil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~------------------------------------ 229 (453)
++++||++||++|+.|+.+.++++. ..++++.+++|+.....+
T Consensus 94 ~~~~lil~Pt~~L~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~lV 172 (228)
T 3iuy_A 94 GPGMLVLTPTRELALHVEAECSKYS-YKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSITYLV 172 (228)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHC-CTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTTCCEEE
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHhc-ccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCcccceEEE
Confidence 7889999999999999999999986 456788888887665432
Q ss_pred ------------------------CCceEEEEeccCcHHHHHHHHHhhccceEEE
Q psy9620 230 ------------------------PDRQVLMWSATWPREVQKLAEDFLDSYIQIN 260 (453)
Q Consensus 230 ------------------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~ 260 (453)
.+.|++++|||+|+++++++..++.+++.+.
T Consensus 173 iDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i~ 227 (228)
T 3iuy_A 173 IDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATWPDTVRQLALSYLKDPMIVY 227 (228)
T ss_dssp ECCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEE
T ss_pred EECHHHHhccchHHHHHHHHHhCCcCCeEEEEEeeCCHHHHHHHHHHCCCCEEEe
Confidence 5789999999999999999999999988765
|
| >3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=3.3e-24 Score=202.85 Aligned_cols=147 Identities=28% Similarity=0.442 Sum_probs=129.6
Q ss_pred ccccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcC--CcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcE
Q psy9620 111 PITEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSG--SNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPI 188 (453)
Q Consensus 111 p~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g--~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~ 188 (453)
++.+|++++|++.+++.|.++||..|+++|.++||.++.+ +|++++||||||||++|++|++.++... ..+++
T Consensus 90 ~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~-----~~~~~ 164 (300)
T 3fmo_B 90 SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA-----NKYPQ 164 (300)
T ss_dssp CCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTT-----SCSCC
T ss_pred CcCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhcc-----CCCce
Confidence 4678999999999999999999999999999999999987 9999999999999999999999987543 24678
Q ss_pred EEEEcCCHHHHHHHHHHHHHhcCCC-CceEEEEeCCccCCCC--------------------------------------
Q psy9620 189 VLVLAPTRELAQQIQEVARDFGSST-YLRSTCVYGGASKGPQ-------------------------------------- 229 (453)
Q Consensus 189 vlil~Ptr~La~q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~-------------------------------------- 229 (453)
+|||+||++||.|+++.++.++... ++.+.+++++......
T Consensus 165 ~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEa 244 (300)
T 3fmo_B 165 CLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEA 244 (300)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTCCCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTH
T ss_pred EEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhhcCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCH
Confidence 9999999999999999999998654 6777777776653321
Q ss_pred ---------------------CCceEEEEeccCcHHHHHHHHHhhccceEEEec
Q psy9620 230 ---------------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIG 262 (453)
Q Consensus 230 ---------------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~ 262 (453)
..+|+++||||++.++..+++.++.+++.+.+.
T Consensus 245 d~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~l~~p~~i~~~ 298 (300)
T 3fmo_B 245 DVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLK 298 (300)
T ss_dssp HHHHHSTTHHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEEEEC
T ss_pred HHHhhccCcHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHHCCCCeEEEec
Confidence 568999999999999999999999999887664
|
| >3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.5e-23 Score=222.17 Aligned_cols=123 Identities=20% Similarity=0.313 Sum_probs=106.2
Q ss_pred hhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCC---cEEEEeccC
Q psy9620 284 KENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRA---GILVATDVA 360 (453)
Q Consensus 284 k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~---~vLvaT~~~ 360 (453)
|...|..++..+. ....++||||+....++.|...|...++.+..+||.++..+|..++++|+++.. .+|++|.++
T Consensus 557 K~~~L~~lL~~~~-~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~ag 635 (800)
T 3mwy_W 557 KMVLLDQLLTRLK-KDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAG 635 (800)
T ss_dssp HHHHHHHHHHHHT-TTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHH
T ss_pred HHHHHHHHHHHHh-hCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecccc
Confidence 3444555555543 245799999999999999999999999999999999999999999999998655 499999999
Q ss_pred ccCCCCCCCcEEEEcCCCCChhHHHHhhhcccCCCCcce--EEEEEcCC
Q psy9620 361 ARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGT--SYTFFTQQ 407 (453)
Q Consensus 361 ~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~--~~~~~~~~ 407 (453)
+.|||++.+++||+||+|+|+..+.|++||+.|.|+... ++.|++..
T Consensus 636 g~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~ 684 (800)
T 3mwy_W 636 GLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKD 684 (800)
T ss_dssp TTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETT
T ss_pred cCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCC
Confidence 999999999999999999999999999999999987644 45566655
|
| >1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.92 E-value=6.6e-25 Score=202.96 Aligned_cols=164 Identities=41% Similarity=0.643 Sum_probs=137.4
Q ss_pred Ceeccc-CCC--ccccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhc
Q psy9620 102 MTLKGN-APN--PITEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQ 178 (453)
Q Consensus 102 ~~~~~~-~p~--p~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~ 178 (453)
+.+.+. .|. ++.+|+++++++.+++++.+.||..|+++|.++++.+++++|+++++|||+|||++|++|++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~ 88 (253)
T 1wrb_A 9 VSVTGPDYSATNVIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQ 88 (253)
T ss_dssp CCEECCSSSCCSCCCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred eeeeCCCCCCCCccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhh
Confidence 334444 555 88899999999999999999999999999999999999999999999999999999999999988654
Q ss_pred CCC----CCCCCcEEEEEcCCHHHHHHHHHHHHHhcCCCCceEEEEeCCccCCCC-------------------------
Q psy9620 179 SQL----KPGDGPIVLVLAPTRELAQQIQEVARDFGSSTYLRSTCVYGGASKGPQ------------------------- 229 (453)
Q Consensus 179 ~~~----~~~~~~~vlil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~------------------------- 229 (453)
... ....++++|||+||++|+.|+.+.+++++...++++..++|+.....+
T Consensus 89 ~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~ 168 (253)
T 1wrb_A 89 DLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKN 168 (253)
T ss_dssp CC------CCBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTT
T ss_pred ccccccccccCCceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcC
Confidence 311 122457899999999999999999999988888888888887653211
Q ss_pred ------------------------------------C---CceEEEEeccCcHHHHHHHHHhhccceEEEecccc
Q psy9620 230 ------------------------------------P---DRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLT 265 (453)
Q Consensus 230 ------------------------------------~---~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (453)
+ .+|++++|||+++++.++++.++.+++.+.+....
T Consensus 169 ~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~ 243 (253)
T 1wrb_A 169 KISLEFCKYIVLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGRVG 243 (253)
T ss_dssp SBCCTTCCEEEEETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEEC---
T ss_pred CCChhhCCEEEEeCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEECCCC
Confidence 1 67899999999999999999999999888876654
|
| >2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B* | Back alignment and structure |
|---|
Probab=99.92 E-value=4e-24 Score=230.25 Aligned_cols=263 Identities=12% Similarity=0.058 Sum_probs=166.9
Q ss_pred CCCHHHHHHHHHHhc--------------CCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHH
Q psy9620 135 RPTPIQAQGWPIAMS--------------GSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQ 200 (453)
Q Consensus 135 ~~~~~Q~~~i~~i~~--------------g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~ 200 (453)
.|+|+|.+|++.++. +++++++++||||||+++ ++++..+... ...+++|||+|+++|+.
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~-----~~~~rvLvlvpr~eL~~ 344 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATEL-----DFIDKVFFVVDRKDLDY 344 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTC-----TTCCEEEEEECGGGCCH
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhc-----CCCceEEEEeCcHHHHH
Confidence 599999999998875 368999999999999997 6666544321 13468999999999999
Q ss_pred HHHHHHHHhcCCC-----------------CceEEEEeC---------C--c-cCCCC----------------------
Q psy9620 201 QIQEVARDFGSST-----------------YLRSTCVYG---------G--A-SKGPQ---------------------- 229 (453)
Q Consensus 201 q~~~~~~~~~~~~-----------------~~~~~~~~g---------g--~-~~~~~---------------------- 229 (453)
|+.+.+..++... ...+.+.+- . . .....
T Consensus 345 Q~~~~f~~f~~~~v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~~~~~~~I~~ 424 (1038)
T 2w00_A 345 QTMKEYQRFSPDSVNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQFGEAQKNLKK 424 (1038)
T ss_dssp HHHHHHHTTSTTCSSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHHHHHHHHHHH
T ss_pred HHHHHHHHhcccccccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcchHHHHHHHH
Confidence 9999988875321 111111110 0 0 00000
Q ss_pred --CCceEEEEeccCcHHHH----HHHHHhhccceEE-----------------Eeccccccc-----Ccc------ceeE
Q psy9620 230 --PDRQVLMWSATWPREVQ----KLAEDFLDSYIQI-----------------NIGSLTLSA-----NHN------IQQV 275 (453)
Q Consensus 230 --~~~q~v~~SAT~~~~~~----~~~~~~~~~~~~~-----------------~~~~~~~~~-----~~~------i~~~ 275 (453)
+..++++||||+..... .....++.+++.. ......... ... +.+.
T Consensus 425 ~~p~a~~lgfTATP~~~~~~~~~~~t~~~FG~~i~~Y~l~~AI~dg~l~p~~v~y~~v~~~~~~~~~e~d~~~~~~i~~~ 504 (1038)
T 2w00_A 425 KFKRYYQFGFTGTPIFPENALGSETTASVFGRELHSYVITDAIRDEKVLKFKVDYNDVRPQFKSLETETDEKKLSAAENQ 504 (1038)
T ss_dssp HCSSEEEEEEESSCCCSTTCTTSCCHHHHHCSEEEEECHHHHHHHTSSCCEEEEECCCCGGGHHHHTCCCHHHHHHTCST
T ss_pred hCCcccEEEEeCCccccccchhhhHHHHHhCCeeEeecHHHHHhCCCcCCeEEEEEeccchhhhccccccHHHHHHHHHH
Confidence 67899999999864321 0111222222211 110000000 000 0000
Q ss_pred EEEccccchhhhHH-HHHHhhhcC--------CCCcEEEEEcchhHHHHHHHHHHhcC------------CeE-EEEcCC
Q psy9620 276 VEVCAEHEKENKLF-GLLNDISSK--------DENKTIIFAETKRKVDKITKSIQNYG------------WAA-VGIHGD 333 (453)
Q Consensus 276 ~~~~~~~~k~~~l~-~ll~~~~~~--------~~~~~lVF~~s~~~~~~l~~~L~~~~------------~~~-~~~h~~ 333 (453)
.......+...+. .++.++... ...++||||+++..|..+++.|...+ +.+ .++|++
T Consensus 505 -~~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s~~ 583 (1038)
T 2w00_A 505 -QAFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIATIFSFA 583 (1038)
T ss_dssp -TTTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEEECCCC
T ss_pred -HHhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEEEEEeCC
Confidence 0000111112222 233332111 23589999999999999999998753 455 445542
Q ss_pred ----------C----------CH-----------------------------HHHHHHHHHHhcCCCcEEEEeccCccCC
Q psy9620 334 ----------K----------SQ-----------------------------QERDYVLKEFRNGRAGILVATDVAARGL 364 (453)
Q Consensus 334 ----------~----------~~-----------------------------~~r~~~~~~f~~g~~~vLvaT~~~~~Gi 364 (453)
+ ++ .+|..++++|++|+++|||+|+++.+|+
T Consensus 584 ~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ILIvvd~lltGf 663 (1038)
T 2w00_A 584 ANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLLIVVGMFLTGF 663 (1038)
T ss_dssp C------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEEEESSTTSSSC
T ss_pred CccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHcCCCeEEEEcchHHhCc
Confidence 2 22 1478899999999999999999999999
Q ss_pred CCCCCcEEEEcCCCCChhHHHHhhhcccCCCCc----ceEEEEEc
Q psy9620 365 DVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNT----GTSYTFFT 405 (453)
Q Consensus 365 Dip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~----g~~~~~~~ 405 (453)
|+|.+ +|+++|.|.+...|+|++||++|.+.. |.++.|..
T Consensus 664 DiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~ 707 (1038)
T 2w00_A 664 DAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDATKTFGNIVTFRD 707 (1038)
T ss_dssp CCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCTTCCSEEEEESSC
T ss_pred Ccccc-cEEEEccCCCccceeehhhccCcCCCCCCCcEEEEEccc
Confidence 99999 788999999999999999999999653 55555543
|
| >3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=3.7e-24 Score=195.86 Aligned_cols=150 Identities=29% Similarity=0.460 Sum_probs=127.3
Q ss_pred CCCccccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCc
Q psy9620 108 APNPITEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGP 187 (453)
Q Consensus 108 ~p~p~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~ 187 (453)
.|.++.+|+++++++.+++.+.++||..|+++|.++++.+++++|+++++|||+|||++|++|++..+... ..++
T Consensus 25 ~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~-----~~~~ 99 (237)
T 3bor_A 25 WNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIE-----FKET 99 (237)
T ss_dssp --CCCCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTT-----SCSC
T ss_pred CCCccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhc-----CCCc
Confidence 56788999999999999999999999999999999999999999999999999999999999999887543 2466
Q ss_pred EEEEEcCCHHHHHHHHHHHHHhcCCCCceEEEEeCCccCCCC--------------------------------------
Q psy9620 188 IVLVLAPTRELAQQIQEVARDFGSSTYLRSTCVYGGASKGPQ-------------------------------------- 229 (453)
Q Consensus 188 ~vlil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~-------------------------------------- 229 (453)
++||++||++|+.|+.+.+++++...++.+..++|+.....+
T Consensus 100 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVi 179 (237)
T 3bor_A 100 QALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVL 179 (237)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEE
T ss_pred eEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEE
Confidence 899999999999999999999988777888877776543211
Q ss_pred -----------------------CCceEEEEeccCcHHHHHHHHHhhccceEEEec
Q psy9620 230 -----------------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIG 262 (453)
Q Consensus 230 -----------------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~ 262 (453)
...|++++|||+++++.++++.++.+++.+.+.
T Consensus 180 DEah~~~~~~~~~~l~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~l~~p~~i~v~ 235 (237)
T 3bor_A 180 DEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVK 235 (237)
T ss_dssp ESHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCSSCEEEC--
T ss_pred CCchHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHCCCCEEEEec
Confidence 578999999999999999999999998877553
|
| >1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.1e-23 Score=190.97 Aligned_cols=151 Identities=29% Similarity=0.475 Sum_probs=129.8
Q ss_pred CCCccccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCc
Q psy9620 108 APNPITEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGP 187 (453)
Q Consensus 108 ~p~p~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~ 187 (453)
.|.++.+|+++++++.+++.++++||..|+++|.++++.+++++|+++++|||+|||++|++|++..+.... .++
T Consensus 9 ~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~-----~~~ 83 (224)
T 1qde_A 9 YDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSV-----KAP 83 (224)
T ss_dssp CCCCCCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTC-----CSC
T ss_pred cCcccCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhccC-----CCc
Confidence 677888999999999999999999999999999999999999999999999999999999999998875432 467
Q ss_pred EEEEEcCCHHHHHHHHHHHHHhcCCCCceEEEEeCCccCCCC--------------------------------------
Q psy9620 188 IVLVLAPTRELAQQIQEVARDFGSSTYLRSTCVYGGASKGPQ-------------------------------------- 229 (453)
Q Consensus 188 ~vlil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~-------------------------------------- 229 (453)
++||++||++|+.|+.+.+++++...++++..++|+.....+
T Consensus 84 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDE 163 (224)
T 1qde_A 84 QALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDE 163 (224)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------CTTCSEEEECHHHHHHHHHTTSSCCTTCCEEEEET
T ss_pred eEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEcC
Confidence 899999999999999999999988888888888887653321
Q ss_pred ---------------------CCceEEEEeccCcHHHHHHHHHhhccceEEEecc
Q psy9620 230 ---------------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGS 263 (453)
Q Consensus 230 ---------------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~ 263 (453)
...|++++|||++.++.++++.++.+++.+.+..
T Consensus 164 ah~~~~~~~~~~l~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~p~~i~~~~ 218 (224)
T 1qde_A 164 ADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKK 218 (224)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHHHHCSSCEEEC---
T ss_pred hhHHhhhhhHHHHHHHHHhCCccCeEEEEEeecCHHHHHHHHHHCCCCEEEEecC
Confidence 5789999999999999999999999998776554
|
| >2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=1e-23 Score=192.91 Aligned_cols=153 Identities=33% Similarity=0.456 Sum_probs=132.2
Q ss_pred CCccccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcE
Q psy9620 109 PNPITEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPI 188 (453)
Q Consensus 109 p~p~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~ 188 (453)
+.++.+|+++++++.+++.+++.||..|+++|.++++.+++++|+++++|||+|||++|++|++..+..... ....+++
T Consensus 21 ~~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~-~~~~~~~ 99 (236)
T 2pl3_A 21 VNEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQW-TSTDGLG 99 (236)
T ss_dssp GGGCSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTC-CGGGCCC
T ss_pred CcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcc-cccCCce
Confidence 566788999999999999999999999999999999999999999999999999999999999988765322 1124678
Q ss_pred EEEEcCCHHHHHHHHHHHHHhcCCCCceEEEEeCCccCCCC---------------------------------------
Q psy9620 189 VLVLAPTRELAQQIQEVARDFGSSTYLRSTCVYGGASKGPQ--------------------------------------- 229 (453)
Q Consensus 189 vlil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~--------------------------------------- 229 (453)
+||++||++|+.|+.+.+++++...++++.+++|+.....+
T Consensus 100 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDE 179 (236)
T 2pl3_A 100 VLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERINNINILVCTPGRLLQHMDETVSFHATDLQMLVLDE 179 (236)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHHTTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETT
T ss_pred EEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhCCCCCEEEECHHHHHHHHHhcCCcccccccEEEEeC
Confidence 99999999999999999999988888888888887543210
Q ss_pred ---------------------CCceEEEEeccCcHHHHHHHHHhhccceEEEec
Q psy9620 230 ---------------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIG 262 (453)
Q Consensus 230 ---------------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~ 262 (453)
..+|++++|||+++++.++++.++.++..+.+.
T Consensus 180 ah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~i~~~ 233 (236)
T 2pl3_A 180 ADRILDMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLSLKNPEYVWVH 233 (236)
T ss_dssp HHHHHHTTTHHHHHHHHHTSCTTSEEEEEESSCCHHHHHHHHHSCSSCEEEECC
T ss_pred hHHHhcCCcHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHhCCCCEEEEeC
Confidence 478999999999999999999999999877654
|
| >3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=5.3e-24 Score=196.19 Aligned_cols=148 Identities=33% Similarity=0.535 Sum_probs=131.2
Q ss_pred CCccccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcE
Q psy9620 109 PNPITEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPI 188 (453)
Q Consensus 109 p~p~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~ 188 (453)
+.+..+|+++++++.+++.++++||..|+++|.++++.+++++|+++++|||+|||++|++|++..+.... .+++
T Consensus 39 ~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~-----~~~~ 113 (249)
T 3ber_A 39 EEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETP-----QRLF 113 (249)
T ss_dssp HHHHCCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSC-----CSSC
T ss_pred ccccCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCC-----CCce
Confidence 34567899999999999999999999999999999999999999999999999999999999998887643 3667
Q ss_pred EEEEcCCHHHHHHHHHHHHHhcCCCCceEEEEeCCccCCC---------C------------------------------
Q psy9620 189 VLVLAPTRELAQQIQEVARDFGSSTYLRSTCVYGGASKGP---------Q------------------------------ 229 (453)
Q Consensus 189 vlil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~---------~------------------------------ 229 (453)
+||++||++|+.|+.+.+++++...++++.+++|+..... .
T Consensus 114 ~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViD 193 (249)
T 3ber_A 114 ALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMD 193 (249)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEEC
T ss_pred EEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEc
Confidence 9999999999999999999998877888888888754211 0
Q ss_pred ----------------------CCceEEEEeccCcHHHHHHHHHhhccceEEEe
Q psy9620 230 ----------------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINI 261 (453)
Q Consensus 230 ----------------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~ 261 (453)
.++|+++||||++.++.++++.++.+++.+.+
T Consensus 194 Eah~l~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~p~~i~v 247 (249)
T 3ber_A 194 EADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAV 247 (249)
T ss_dssp SHHHHHHTTCHHHHHHHHHSSCSSSEEEEEESSCCHHHHHHHHHHCSSCEEEEC
T ss_pred ChhhhhccChHHHHHHHHHhCCCCCeEEEEeccCCHHHHHHHHHHCCCCEEEEe
Confidence 47899999999999999999999999987765
|
| >1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.91 E-value=7.5e-24 Score=191.45 Aligned_cols=148 Identities=31% Similarity=0.519 Sum_probs=127.4
Q ss_pred ccccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEE
Q psy9620 111 PITEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVL 190 (453)
Q Consensus 111 p~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vl 190 (453)
|..+|+++++++.+++.++++||..|+++|.++++.+++++|+++++|||+|||++|++|++..+.... .++++|
T Consensus 2 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~-----~~~~~l 76 (219)
T 1q0u_A 2 AETQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPER-----AEVQAV 76 (219)
T ss_dssp --CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTS-----CSCCEE
T ss_pred CCCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhCc-----CCceEE
Confidence 456899999999999999999999999999999999999999999999999999999999998875432 467899
Q ss_pred EEcCCHHHHHHHHHHHHHhcCCC----CceEEEEeCCccCCC---------C----------------------------
Q psy9620 191 VLAPTRELAQQIQEVARDFGSST----YLRSTCVYGGASKGP---------Q---------------------------- 229 (453)
Q Consensus 191 il~Ptr~La~q~~~~~~~~~~~~----~~~~~~~~gg~~~~~---------~---------------------------- 229 (453)
|++||++|+.|+.+.++++.... ++++.+++|+..... .
T Consensus 77 il~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lVi 156 (219)
T 1q0u_A 77 ITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVV 156 (219)
T ss_dssp EECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEE
T ss_pred EEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEE
Confidence 99999999999999999987665 677888887754211 0
Q ss_pred -----------------------CCceEEEEeccCcHHHHHHHHHhhccceEEEecc
Q psy9620 230 -----------------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGS 263 (453)
Q Consensus 230 -----------------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~ 263 (453)
...|++++|||++.++.++++.++.++..+.+..
T Consensus 157 DEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~~~~~~ 213 (219)
T 1q0u_A 157 DEADLMLDMGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPTFVHVLE 213 (219)
T ss_dssp CSHHHHHHTTCHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHHCSSCEEEECC-
T ss_pred cCchHHhhhChHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHcCCCeEEEeec
Confidence 4689999999999999999999999998876554
|
| >2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.1e-23 Score=191.89 Aligned_cols=149 Identities=26% Similarity=0.429 Sum_probs=126.5
Q ss_pred CCCccccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCc
Q psy9620 108 APNPITEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGP 187 (453)
Q Consensus 108 ~p~p~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~ 187 (453)
.|.+..+|+++++++.+++.++++||..|+++|.++++.+++++|+++++|||+|||++|++|++..+.... .++
T Consensus 19 ~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~-----~~~ 93 (230)
T 2oxc_A 19 LLAEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLEN-----LST 93 (230)
T ss_dssp -----CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTS-----CSC
T ss_pred CCCCCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcC-----CCc
Confidence 677788999999999999999999999999999999999999999999999999999999999998875432 467
Q ss_pred EEEEEcCCHHHHHHHHHHHHHhcCCC-CceEEEEeCCccCCC--------C-----------------------------
Q psy9620 188 IVLVLAPTRELAQQIQEVARDFGSST-YLRSTCVYGGASKGP--------Q----------------------------- 229 (453)
Q Consensus 188 ~vlil~Ptr~La~q~~~~~~~~~~~~-~~~~~~~~gg~~~~~--------~----------------------------- 229 (453)
++||++||++|+.|+.+.+++++... ++++.+++|+..... .
T Consensus 94 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViD 173 (230)
T 2oxc_A 94 QILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLKKCHIAVGSPGRIKQLIELDYLNPGSIRLFILD 173 (230)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHTTSCSEEEECHHHHHHHHHTTSSCGGGCCEEEES
T ss_pred eEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhccCCCEEEECHHHHHHHHhcCCcccccCCEEEeC
Confidence 89999999999999999999997654 788888888754211 0
Q ss_pred -----------------------CCceEEEEeccCcHHHHHHHHHhhccceEEEe
Q psy9620 230 -----------------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINI 261 (453)
Q Consensus 230 -----------------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~ 261 (453)
...|++++|||++.++.+++..++.+++.+.+
T Consensus 174 Eah~~~~~~~~~~~~~~i~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~p~~i~~ 228 (230)
T 2oxc_A 174 EADKLLEEGSFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMRDPTFVRL 228 (230)
T ss_dssp SHHHHHSTTSSHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHTTTCSSCEEECC
T ss_pred CchHhhcCcchHHHHHHHHHhCCCCCeEEEEEeccCHHHHHHHHHHcCCCeEEEc
Confidence 36799999999999999999999988877654
|
| >1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.90 E-value=3.5e-23 Score=185.19 Aligned_cols=142 Identities=30% Similarity=0.556 Sum_probs=124.6
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEE
Q psy9620 113 TEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVL 192 (453)
Q Consensus 113 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil 192 (453)
.+|+++++++.+++.+.++||..|+++|.++++.+++++|+++++|||+|||++|++|++..+... ..++++||+
T Consensus 3 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~-----~~~~~~lil 77 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLK-----KDNIQAMVI 77 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTT-----SCSCCEEEE
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhccc-----CCCeeEEEE
Confidence 479999999999999999999999999999999999999999999999999999999999877543 246789999
Q ss_pred cCCHHHHHHHHHHHHHhcCCC-CceEEEEeCCccCCC---------C---------------------------------
Q psy9620 193 APTRELAQQIQEVARDFGSST-YLRSTCVYGGASKGP---------Q--------------------------------- 229 (453)
Q Consensus 193 ~Ptr~La~q~~~~~~~~~~~~-~~~~~~~~gg~~~~~---------~--------------------------------- 229 (453)
+||++|+.|+.+.+.++.... ++++..++|+..... .
T Consensus 78 ~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~ 157 (206)
T 1vec_A 78 VPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADK 157 (206)
T ss_dssp CSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHH
T ss_pred eCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHH
Confidence 999999999999999998766 678888887754211 0
Q ss_pred ------------------CCceEEEEeccCcHHHHHHHHHhhccceEE
Q psy9620 230 ------------------PDRQVLMWSATWPREVQKLAEDFLDSYIQI 259 (453)
Q Consensus 230 ------------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~ 259 (453)
...|++++|||+|.++.++++.++.+++.+
T Consensus 158 ~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i 205 (206)
T 1vec_A 158 LLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp HTSTTTHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred hHhhCcHHHHHHHHHhCCccceEEEEEeeCCHHHHHHHHHHcCCCeEe
Confidence 478999999999999999999999888754
|
| >1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.89 E-value=5.4e-23 Score=185.92 Aligned_cols=147 Identities=26% Similarity=0.434 Sum_probs=125.2
Q ss_pred CCccccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcE
Q psy9620 109 PNPITEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPI 188 (453)
Q Consensus 109 p~p~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~ 188 (453)
+....+|+++++++.+++.+.+.||..|+++|.++++.+++++|+++++|||+|||++|++|++..+... ..+++
T Consensus 10 ~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~-----~~~~~ 84 (220)
T 1t6n_A 10 SIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV-----TGQVS 84 (220)
T ss_dssp ----CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCC-----TTCCC
T ss_pred cccCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhcc-----CCCEE
Confidence 3445679999999999999999999999999999999999999999999999999999999999876432 13568
Q ss_pred EEEEcCCHHHHHHHHHHHHHhcCCC-CceEEEEeCCccCCC----------C----------------------------
Q psy9620 189 VLVLAPTRELAQQIQEVARDFGSST-YLRSTCVYGGASKGP----------Q---------------------------- 229 (453)
Q Consensus 189 vlil~Ptr~La~q~~~~~~~~~~~~-~~~~~~~~gg~~~~~----------~---------------------------- 229 (453)
+||++||++|+.|+.+.++++.... ++++.+++|+..... .
T Consensus 85 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lVi 164 (220)
T 1t6n_A 85 VLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFIL 164 (220)
T ss_dssp EEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred EEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEE
Confidence 9999999999999999999997665 788888888754210 1
Q ss_pred ------------------------CCceEEEEeccCcHHHHHHHHHhhccceEEE
Q psy9620 230 ------------------------PDRQVLMWSATWPREVQKLAEDFLDSYIQIN 260 (453)
Q Consensus 230 ------------------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~ 260 (453)
...|++++|||++.++.++++.++.+++.+.
T Consensus 165 DEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~ 219 (220)
T 1t6n_A 165 DECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIF 219 (220)
T ss_dssp ESHHHHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHTTCSSCEEEE
T ss_pred cCHHHHhcccCcHHHHHHHHHhCCCcCeEEEEEeecCHHHHHHHHHHcCCCeEEe
Confidence 4689999999999999999999999987664
|
| >2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1.5e-22 Score=181.11 Aligned_cols=144 Identities=38% Similarity=0.675 Sum_probs=124.4
Q ss_pred cccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEc
Q psy9620 114 EFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLA 193 (453)
Q Consensus 114 ~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~ 193 (453)
+|+++++++.+++.+++.||..|+++|.++++.+++++|+++++|||+|||++|++|++..+..... ...++++||++
T Consensus 2 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~--~~~~~~~lil~ 79 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQE--RGRKPRALVLT 79 (207)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCC--TTCCCSEEEEC
T ss_pred ChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccc--cCCCCcEEEEE
Confidence 6899999999999999999999999999999999999999999999999999999999988764321 23567899999
Q ss_pred CCHHHHHHHHHHHHHhcCCCCceEEEEeCCccCCC---------C-----------------------------------
Q psy9620 194 PTRELAQQIQEVARDFGSSTYLRSTCVYGGASKGP---------Q----------------------------------- 229 (453)
Q Consensus 194 Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~---------~----------------------------------- 229 (453)
||++|+.|+.+.++++... +++..++|+..... +
T Consensus 80 P~~~L~~q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~ 157 (207)
T 2gxq_A 80 PTRELALQVASELTAVAPH--LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEML 157 (207)
T ss_dssp SSHHHHHHHHHHHHHHCTT--SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhc--ceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhHhh
Confidence 9999999999999999754 56777777654211 0
Q ss_pred ----------------CCceEEEEeccCcHHHHHHHHHhhccceEEEe
Q psy9620 230 ----------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINI 261 (453)
Q Consensus 230 ----------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~ 261 (453)
...|++++|||++.++.++++.++.+++.+.+
T Consensus 158 ~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~~ 205 (207)
T 2gxq_A 158 SMGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVLINV 205 (207)
T ss_dssp HTTCHHHHHHHHHTSCTTSEEEEECSSCCHHHHHHHHHHCSSCEEEEC
T ss_pred ccchHHHHHHHHHhCCccCeEEEEEEecCHHHHHHHHHHcCCCeEEEc
Confidence 47899999999999999999999999887654
|
| >3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.3e-22 Score=186.64 Aligned_cols=143 Identities=34% Similarity=0.493 Sum_probs=120.0
Q ss_pred ccccccC--CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEE
Q psy9620 113 TEFAEAN--FPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVL 190 (453)
Q Consensus 113 ~~f~~~~--l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vl 190 (453)
.+|++++ +++.+++.++++||..|+++|.++++.++.++|++++||||||||++|++|++..+..... ....++++|
T Consensus 52 ~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~-~~~~~~~~l 130 (262)
T 3ly5_A 52 TSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRF-MPRNGTGVL 130 (262)
T ss_dssp GCC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTC-CGGGCCCEE
T ss_pred CChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccc-cccCCceEE
Confidence 4566665 9999999999999999999999999999999999999999999999999999998876432 122467899
Q ss_pred EEcCCHHHHHHHHHHHHHhcCCCCceEEEEeCCccCCCC-----------------------------------------
Q psy9620 191 VLAPTRELAQQIQEVARDFGSSTYLRSTCVYGGASKGPQ----------------------------------------- 229 (453)
Q Consensus 191 il~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~----------------------------------------- 229 (453)
||+||++||.|+++.+++++...++.+.+++|+.....+
T Consensus 131 il~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEa 210 (262)
T 3ly5_A 131 ILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEA 210 (262)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSH
T ss_pred EEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcCh
Confidence 999999999999999999988888888888877542211
Q ss_pred --------------------CCceEEEEeccCcHHHHHHHHHhhccc
Q psy9620 230 --------------------PDRQVLMWSATWPREVQKLAEDFLDSY 256 (453)
Q Consensus 230 --------------------~~~q~v~~SAT~~~~~~~~~~~~~~~~ 256 (453)
..+|+++||||+++++.++++.++.+.
T Consensus 211 h~l~~~~~~~~l~~i~~~~~~~~q~l~~SAT~~~~v~~~~~~~l~~~ 257 (262)
T 3ly5_A 211 DRILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKE 257 (262)
T ss_dssp HHHHHTTCHHHHHHHHHHSCSSSEEEEECSSCCHHHHHHHHHHCSSC
T ss_pred HHHhhhhHHHHHHHHHHhCCCCCeEEEEEecCCHHHHHHHHHHcCCC
Confidence 568999999999999999999888754
|
| >2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.87 E-value=1e-20 Score=194.69 Aligned_cols=83 Identities=23% Similarity=0.207 Sum_probs=74.3
Q ss_pred CCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhc
Q psy9620 131 QGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFG 210 (453)
Q Consensus 131 ~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~ 210 (453)
+|+ .|+++|..++|.+++|+ |+.++||+|||++|.+|++..... +..|+||+||++||.|.++++..++
T Consensus 76 lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~--------G~qv~VvTPTreLA~Qdae~m~~l~ 144 (997)
T 2ipc_A 76 LGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNALT--------GKGVHVVTVNDYLARRDAEWMGPVY 144 (997)
T ss_dssp TCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTT--------CSCCEEEESSHHHHHHHHHHHHHHH
T ss_pred hCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHHh--------CCCEEEEeCCHHHHHHHHHHHHHHH
Confidence 589 99999999999999998 999999999999999999755432 4459999999999999999999999
Q ss_pred CCCCceEEEEeCCc
Q psy9620 211 SSTYLRSTCVYGGA 224 (453)
Q Consensus 211 ~~~~~~~~~~~gg~ 224 (453)
...++++.+++|+.
T Consensus 145 ~~lGLsv~~i~Gg~ 158 (997)
T 2ipc_A 145 RGLGLSVGVIQHAS 158 (997)
T ss_dssp HTTTCCEEECCTTC
T ss_pred HhcCCeEEEEeCCC
Confidence 88899998888764
|
| >1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.79 E-value=4.8e-19 Score=164.29 Aligned_cols=128 Identities=18% Similarity=0.217 Sum_probs=100.1
Q ss_pred cccchhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhc-CCeEEEEcCCCCHHHHHHHHHHHhcC-CCc-EEEE
Q psy9620 280 AEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNY-GWAAVGIHGDKSQQERDYVLKEFRNG-RAG-ILVA 356 (453)
Q Consensus 280 ~~~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~-~~~~~~~h~~~~~~~r~~~~~~f~~g-~~~-vLva 356 (453)
....|...|.+++..+.. ...++||||++...++.+...|... ++.+..+||++++.+|..++++|+++ ..+ +|++
T Consensus 93 ~~s~K~~~L~~ll~~~~~-~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~s 171 (271)
T 1z5z_A 93 RRSGKMIRTMEIIEEALD-EGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLS 171 (271)
T ss_dssp TTCHHHHHHHHHHHHHHH-TTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred ccCHHHHHHHHHHHHHHh-CCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEe
Confidence 345688888888887643 3579999999999999999999885 99999999999999999999999998 677 7899
Q ss_pred eccCccCCCCCCCcEEEEcCCCCChhHHHHhhhcccCCCCcceE--EEEEcCCC
Q psy9620 357 TDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTS--YTFFTQQN 408 (453)
Q Consensus 357 T~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~--~~~~~~~~ 408 (453)
|+++++|||++++++||+||+|+++..|.|++||++|.|+.+.+ +.|++...
T Consensus 172 t~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~T 225 (271)
T 1z5z_A 172 VKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGT 225 (271)
T ss_dssp CCTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETTS
T ss_pred hhhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCCC
Confidence 99999999999999999999999999999999999999987654 55666553
|
| >2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.67 E-value=7.3e-16 Score=157.28 Aligned_cols=115 Identities=14% Similarity=0.191 Sum_probs=74.1
Q ss_pred hhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEE--EeccCccC
Q psy9620 286 NKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILV--ATDVAARG 363 (453)
Q Consensus 286 ~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLv--aT~~~~~G 363 (453)
..+...+..+.....+.+|||++|...++.+++.|.. +. ..+++.. .+|+.+++.|+.+. .||+ +|..+++|
T Consensus 370 ~~~~~~l~~~~~~~~g~~lvff~S~~~~~~v~~~l~~--~~-~~~q~~~--~~~~~~l~~f~~~~-~il~~V~~~~~~EG 443 (540)
T 2vl7_A 370 PIYSILLKRIYENSSKSVLVFFPSYEMLESVRIHLSG--IP-VIEENKK--TRHEEVLELMKTGK-YLVMLVMRAKESEG 443 (540)
T ss_dssp HHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHTTCTT--SC-EEESTTT--CCHHHHHHHHHTSC-CEEEEEC-------
T ss_pred HHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHhcc--Cc-eEecCCC--CcHHHHHHHHhcCC-eEEEEEecCceecc
Confidence 3455555555555567999999999999999998864 33 4556654 46889999999864 6777 88999999
Q ss_pred CCCCC----CcEEEEcCCCCCh------------------------------hHHHHhhhcccCCCCcceEEEEEcC
Q psy9620 364 LDVDD----VKFVINFDYPNNS------------------------------EDYIHRIGRTGRSDNTGTSYTFFTQ 406 (453)
Q Consensus 364 iDip~----v~~VI~~d~p~s~------------------------------~~y~qr~GRagR~g~~g~~~~~~~~ 406 (453)
||+|+ +++||++++|... ..+.|.+||+-|...+--+++++++
T Consensus 444 iD~~~~~~~~~~Vii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Q~~GR~iR~~~D~g~v~llD~ 520 (540)
T 2vl7_A 444 VEFREKENLFESLVLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSIIHDLTAIVIKQTIGRAFRDPNDYVKIYLCDS 520 (540)
T ss_dssp --------CEEEEEEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCCSTTCCCEEEEESG
T ss_pred eecCCCcccccEEEEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhCCcccCCCccEEEEEEcc
Confidence 99997 7899999988421 1236899999998555445555554
|
| >4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=5.6e-15 Score=152.57 Aligned_cols=116 Identities=19% Similarity=0.261 Sum_probs=77.7
Q ss_pred hHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEec--cCccCC
Q psy9620 287 KLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATD--VAARGL 364 (453)
Q Consensus 287 ~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~--~~~~Gi 364 (453)
.+.+.+..+.....+.+|||++|....+.+++.|.. +... ..-+++..++..++++|+ ++..||++|. .+++||
T Consensus 435 ~~~~~i~~l~~~~~g~~lvlF~Sy~~l~~v~~~l~~--~~~~-~~q~~~~~~~~~ll~~f~-~~~~vL~~v~~gsf~EGi 510 (620)
T 4a15_A 435 RMATVIEDIILKVKKNTIVYFPSYSLMDRVENRVSF--EHMK-EYRGIDQKELYSMLKKFR-RDHGTIFAVSGGRLSEGI 510 (620)
T ss_dssp HHHHHHHHHHHHHCSCEEEEESCHHHHHHHTSSCCS--CCEE-CCTTCCSHHHHHHHHHHT-TSCCEEEEETTSCC----
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHHh--cchh-ccCCCChhHHHHHHHHhc-cCCcEEEEEecCceeccc
Confidence 344444444444467899999999999999988862 2222 445566678999999999 8889999986 999999
Q ss_pred CCCC--CcEEEEcCCCCCh-----------------------------hHHHHhhhcccCCCCcceEEEEEcC
Q psy9620 365 DVDD--VKFVINFDYPNNS-----------------------------EDYIHRIGRTGRSDNTGTSYTFFTQ 406 (453)
Q Consensus 365 Dip~--v~~VI~~d~p~s~-----------------------------~~y~qr~GRagR~g~~g~~~~~~~~ 406 (453)
|+|+ ...||...+|... ....|-+||+-|...+--+++++++
T Consensus 511 D~~g~~l~~viI~~lPfp~~~p~~~ar~~~~~~~~g~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~ 583 (620)
T 4a15_A 511 NFPGNELEMIILAGLPFPRPDAINRSLFDYYERKYGKGWEYSVVYPTAIKIRQEIGRLIRSAEDTGACVILDK 583 (620)
T ss_dssp ----CCCCEEEESSCCCCCCCHHHHHHHHHHHHHHSCHHHHHTHHHHHHHHHHHHHTTCCSTTCCEEEEEECG
T ss_pred cCCCCceEEEEEEcCCCCCCCHHHHHHHHHHHHhhCCCchHHhHHHHHHHHHHHhCccccCCCceEEEEEEcc
Confidence 9996 5689988877321 1126899999998666555555554
|
| >3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1* | Back alignment and structure |
|---|
Probab=99.59 E-value=8.2e-14 Score=142.64 Aligned_cols=79 Identities=20% Similarity=0.094 Sum_probs=66.6
Q ss_pred CCCCCCHHHHHHHHHH----hcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHH
Q psy9620 132 GFDRPTPIQAQGWPIA----MSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVAR 207 (453)
Q Consensus 132 g~~~~~~~Q~~~i~~i----~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~ 207 (453)
|| +++|.|.+++..+ ..++++++.||||+|||++|++|++. .++++||++||++|+.|+.+++.
T Consensus 1 ~~-~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~-----------~~~~v~i~~pt~~l~~q~~~~~~ 68 (551)
T 3crv_A 1 MV-KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLE-----------VKPKVLFVVRTHNEFYPIYRDLT 68 (551)
T ss_dssp CC-SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHH-----------HCSEEEEEESSGGGHHHHHHHHT
T ss_pred CC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHh-----------CCCeEEEEcCCHHHHHHHHHHHH
Confidence 35 7999999987754 47899999999999999999999997 25679999999999999999998
Q ss_pred HhcCCCCceEEEEeC
Q psy9620 208 DFGSSTYLRSTCVYG 222 (453)
Q Consensus 208 ~~~~~~~~~~~~~~g 222 (453)
.+....++++.++.|
T Consensus 69 ~l~~~~~~~~~~l~g 83 (551)
T 3crv_A 69 KIREKRNITFSFLVG 83 (551)
T ss_dssp TCCCSSCCCEEECCC
T ss_pred HHhhhcCccEEEEcc
Confidence 886666666666555
|
| >1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23 | Back alignment and structure |
|---|
Probab=99.47 E-value=1.2e-13 Score=129.18 Aligned_cols=86 Identities=21% Similarity=0.190 Sum_probs=73.6
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhcCCCC
Q psy9620 135 RPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGSSTY 214 (453)
Q Consensus 135 ~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~~~~~ 214 (453)
.|+++|.++++.++++++.++++|||+|||+++++++...+.. ...++|||+||++|+.|+.+.+.+++....
T Consensus 113 ~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~-------~~~~~lil~Pt~~L~~q~~~~l~~~~~~~~ 185 (282)
T 1rif_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN-------YEGKILIIVPTTALTTQMADDFVDYRLFSH 185 (282)
T ss_dssp CCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHH-------CSSEEEEECSSHHHHHHHHHHHHHHTSCCG
T ss_pred CccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHc-------CCCeEEEEECCHHHHHHHHHHHHHhccccc
Confidence 8999999999999988889999999999999998887766543 233699999999999999999999987667
Q ss_pred ceEEEEeCCccCC
Q psy9620 215 LRSTCVYGGASKG 227 (453)
Q Consensus 215 ~~~~~~~gg~~~~ 227 (453)
..+..++++....
T Consensus 186 ~~~~~~~~~~~~~ 198 (282)
T 1rif_A 186 AMIKKIGGGASKD 198 (282)
T ss_dssp GGEEECSTTCSST
T ss_pred ceEEEEeCCCcch
Confidence 7788887776553
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.39 E-value=2.4e-12 Score=116.96 Aligned_cols=74 Identities=15% Similarity=0.037 Sum_probs=62.9
Q ss_pred CCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHh
Q psy9620 133 FDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDF 209 (453)
Q Consensus 133 ~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~ 209 (453)
...++++|.++++.+.++++++++||||||||+++.++++..+..... ...+.+|+++|+++|+.|+.+.+...
T Consensus 59 ~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~---~~~~~~l~~~p~~~la~q~~~~~~~~ 132 (235)
T 3llm_A 59 LLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR---AAECNIVVTQPRRISAVSVAERVAFE 132 (235)
T ss_dssp TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC---GGGCEEEEEESSHHHHHHHHHHHHHT
T ss_pred cCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC---CCceEEEEeccchHHHHHHHHHHHHH
Confidence 346899999999999999999999999999999999988877655322 23568999999999999998888764
|
| >2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.33 E-value=1.1e-11 Score=112.67 Aligned_cols=77 Identities=23% Similarity=0.093 Sum_probs=64.2
Q ss_pred CCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhcCCC
Q psy9620 134 DRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGSST 213 (453)
Q Consensus 134 ~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~~~~ 213 (453)
..|+++|.++++.+++++++++++|||+|||++++.++... +.++||++|+++|+.|+.+.+.++
T Consensus 92 ~~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~-----------~~~~liv~P~~~L~~q~~~~~~~~---- 156 (237)
T 2fz4_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL-----------STPTLIVVPTLALAEQWKERLGIF---- 156 (237)
T ss_dssp CCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS-----------CSCEEEEESSHHHHHHHHHHHGGG----
T ss_pred CCcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc-----------CCCEEEEeCCHHHHHHHHHHHHhC----
Confidence 38999999999999999999999999999999988776542 345999999999999999998884
Q ss_pred Cce-EEEEeCCcc
Q psy9620 214 YLR-STCVYGGAS 225 (453)
Q Consensus 214 ~~~-~~~~~gg~~ 225 (453)
+++ +..+.++..
T Consensus 157 ~~~~v~~~~g~~~ 169 (237)
T 2fz4_A 157 GEEYVGEFSGRIK 169 (237)
T ss_dssp CGGGEEEESSSCB
T ss_pred CCCeEEEEeCCCC
Confidence 466 666665543
|
| >3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.9e-12 Score=115.81 Aligned_cols=93 Identities=23% Similarity=0.221 Sum_probs=73.9
Q ss_pred CCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHH-HHHHHHHhcC
Q psy9620 133 FDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQ-IQEVARDFGS 211 (453)
Q Consensus 133 ~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q-~~~~~~~~~~ 211 (453)
...|+++|.++++.+++++++++++|||+|||++++++++..+...... ..++++||++|+++|+.| +.+.+.++..
T Consensus 31 ~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~--~~~~~~lil~p~~~L~~q~~~~~~~~~~~ 108 (216)
T 3b6e_A 31 ELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKA--SEPGKVIVLVNKVLLVEQLFRKEFQPFLK 108 (216)
T ss_dssp CCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHT--TCCCCEEEEESSHHHHHHHHHHTHHHHHT
T ss_pred CCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccc--cCCCcEEEEECHHHHHHHHHHHHHHHHhc
Confidence 4489999999999999999999999999999999999998776543211 135679999999999999 7788888865
Q ss_pred CCCceEEEEeCCccCCC
Q psy9620 212 STYLRSTCVYGGASKGP 228 (453)
Q Consensus 212 ~~~~~~~~~~gg~~~~~ 228 (453)
. ++++..+.|+.....
T Consensus 109 ~-~~~v~~~~g~~~~~~ 124 (216)
T 3b6e_A 109 K-WYRVIGLSGDTQLKI 124 (216)
T ss_dssp T-TSCEEECCC---CCC
T ss_pred c-CceEEEEeCCcccch
Confidence 4 677888877765443
|
| >1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D* | Back alignment and structure |
|---|
Probab=97.92 E-value=8.9e-06 Score=83.77 Aligned_cols=66 Identities=24% Similarity=0.312 Sum_probs=54.7
Q ss_pred CHHHHHHHHHHhcCCcEEEEecCCCcch--hhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHH
Q psy9620 137 TPIQAQGWPIAMSGSNMVGVAQTGSGKT--LAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARD 208 (453)
Q Consensus 137 ~~~Q~~~i~~i~~g~d~li~a~TGsGKT--~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~ 208 (453)
++.|+++++.++.+++++++|++||||| ++++++++..+.. ..+.++++++||..+|.++.+.+..
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~------~~~~~vll~APTg~AA~~L~e~~~~ 218 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMAD------GERCRIRLAAPTGKAAARLTESLGK 218 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCS------SCCCCEEEEBSSHHHHHHHHHHHTH
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhh------cCCCeEEEEeCChhHHHHHHHHHHH
Confidence 7899999999999999999999999999 5566776655421 1356799999999999999887664
|
| >3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A | Back alignment and structure |
|---|
Probab=97.28 E-value=0.0031 Score=58.56 Aligned_cols=147 Identities=10% Similarity=0.067 Sum_probs=97.4
Q ss_pred ccchhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccC
Q psy9620 281 EHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVA 360 (453)
Q Consensus 281 ~~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~ 360 (453)
...|...|..+|..+.. .+.++|||++..+..+-+..+|...++....+.|.....++. -.+....|.+.|...
T Consensus 107 ~SGKf~~L~~LL~~l~~-~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~~k-----~~~~~~~i~Lltsag 180 (328)
T 3hgt_A 107 NSGKFSVLRDLINLVQE-YETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSAAA-----ANDFSCTVHLFSSEG 180 (328)
T ss_dssp TCHHHHHHHHHHHHHTT-SCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------CCSEEEEEEESSC
T ss_pred cCccHHHHHHHHHHHHh-CCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhhhh-----cccCCceEEEEECCC
Confidence 45677777788877754 467999999999999999999999999999999985543221 124555666667766
Q ss_pred ccCCC-----CCCCcEEEEcCCCCChhH-HHHhhhcccCC----CCcceEEEEEcCCChHHHHHHHHHHHhcCCCCChHH
Q psy9620 361 ARGLD-----VDDVKFVINFDYPNNSED-YIHRIGRTGRS----DNTGTSYTFFTQQNSRQAKDLIDVLTESNHPVDPKL 430 (453)
Q Consensus 361 ~~GiD-----ip~v~~VI~~d~p~s~~~-y~qr~GRagR~----g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~v~~~l 430 (453)
.-|++ ....+.||.||.-+++.. .+|.+-|+-|. +++-.+|-|++....+...-- +=+..+..-..+|
T Consensus 181 ~~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiEh~~l~--~~~~~~~~~~~~l 258 (328)
T 3hgt_A 181 INFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSIDHCRLF--FGKKFDKNSREYL 258 (328)
T ss_dssp CCTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSHHHHHHH--HHHHTCTTCHHHH
T ss_pred CCCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCHHHHHHH--ccCCCCcchHHHH
Confidence 66676 678899999999888775 58877777775 245678888887665443221 1112233444555
Q ss_pred HHHHh
Q psy9620 431 SALAS 435 (453)
Q Consensus 431 ~~~~~ 435 (453)
..+.+
T Consensus 259 ~k~i~ 263 (328)
T 3hgt_A 259 ENVTA 263 (328)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55543
|
| >4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A | Back alignment and structure |
|---|
Probab=97.10 E-value=0.001 Score=69.07 Aligned_cols=69 Identities=19% Similarity=0.135 Sum_probs=53.8
Q ss_pred CCCCHHHHHHHHHHhcCCc-EEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhc
Q psy9620 134 DRPTPIQAQGWPIAMSGSN-MVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFG 210 (453)
Q Consensus 134 ~~~~~~Q~~~i~~i~~g~d-~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~ 210 (453)
..+++-|.+|+..++..++ .||+||.|||||.+..-.+. .+.. .+.++|+++||..-+.++.+.+....
T Consensus 188 ~~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~-~l~~-------~~~~ILv~a~TN~AvD~i~erL~~~~ 257 (646)
T 4b3f_X 188 TCLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIIL-QAVK-------QGLKVLCCAPSNIAVDNLVERLALCK 257 (646)
T ss_dssp TTCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHH-HHHH-------TTCCEEEEESSHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHH-HHHh-------CCCeEEEEcCchHHHHHHHHHHHhcC
Confidence 3689999999999987665 57899999999977544333 3333 24569999999999999988887653
|
| >2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0011 Score=68.46 Aligned_cols=70 Identities=20% Similarity=0.196 Sum_probs=55.2
Q ss_pred CCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHh
Q psy9620 133 FDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDF 209 (453)
Q Consensus 133 ~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~ 209 (453)
+..+++.|.+|+..++...-++|+||+|+|||.+..- ++..+... .+.++|+++||...+.++.+.+.+.
T Consensus 178 ~~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~-~i~~l~~~------~~~~ilv~a~tn~A~~~l~~~l~~~ 247 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSAT-IVYHLARQ------GNGPVLVCAPSNIAVDQLTEKIHQT 247 (624)
T ss_dssp SCCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHH-HHHHHHTS------SSCCEEEEESSHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHH-HHHHHHHc------CCCeEEEEeCcHHHHHHHHHHHHhc
Confidence 4578999999999998877889999999999976433 33333321 2456999999999999998888765
|
| >2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0015 Score=69.14 Aligned_cols=71 Identities=20% Similarity=0.294 Sum_probs=55.7
Q ss_pred CCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhc
Q psy9620 133 FDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFG 210 (453)
Q Consensus 133 ~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~ 210 (453)
+..+++.|.+|+..++.+.-++|.||.|||||.+..- ++..+... .+.++|+++||...+.++.+.+.+.+
T Consensus 358 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~-~i~~l~~~------~~~~ILv~a~tn~A~d~l~~rL~~~g 428 (802)
T 2xzl_A 358 FAQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSAT-IVYHLSKI------HKDRILVCAPSNVAVDHLAAKLRDLG 428 (802)
T ss_dssp SCCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHH-HHHHHHHH------HCCCEEEEESSHHHHHHHHHHHHHTT
T ss_pred cccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHH-HHHHHHhC------CCCeEEEEcCcHHHHHHHHHHHHhhC
Confidence 4578999999999998877789999999999976433 33333321 23469999999999999999988763
|
| >2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0028 Score=67.09 Aligned_cols=70 Identities=20% Similarity=0.202 Sum_probs=55.1
Q ss_pred CCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHh
Q psy9620 133 FDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDF 209 (453)
Q Consensus 133 ~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~ 209 (453)
...+++.|.+|+..++.+.-++|.||.|+|||.+.. .++..+... .+.++|+++||...+.++.+.+.+.
T Consensus 354 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~-~~i~~l~~~------~~~~ilv~a~tn~A~~~l~~~l~~~ 423 (800)
T 2wjy_A 354 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSA-TIVYHLARQ------GNGPVLVCAPSNIAVDQLTEKIHQT 423 (800)
T ss_dssp SCCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHH-HHHHHHHTT------CSSCEEEEESSHHHHHHHHHHHHTT
T ss_pred ccCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHH-HHHHHHHHc------CCCcEEEEcCcHHHHHHHHHHHHHh
Confidence 457899999999999888788999999999997643 334444321 2456999999999999998888765
|
| >3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A* | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0033 Score=65.22 Aligned_cols=71 Identities=17% Similarity=0.148 Sum_probs=52.9
Q ss_pred CCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhc
Q psy9620 134 DRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFG 210 (453)
Q Consensus 134 ~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~ 210 (453)
..+++-|.+++.. ....++|.|+.|||||.+.+--+...+.... . ...++|++++|+..+.++.+.+.++.
T Consensus 8 ~~Ln~~Q~~av~~--~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~-~---~~~~iL~ltft~~aa~e~~~rl~~~~ 78 (647)
T 3lfu_A 8 DSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVEN-C---SPYSIMAVTFTNKAAAEMRHRIGQLM 78 (647)
T ss_dssp TTCCHHHHHHHTC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTSC-C---CGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHhC--CCCCEEEEECCCCCHHHHHHHHHHHHHHhCC-C---ChhhEEEEeccHHHHHHHHHHHHHHh
Confidence 4789999999973 3678999999999999775443333333211 1 22369999999999999999888763
|
| >3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A* | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0039 Score=63.50 Aligned_cols=63 Identities=22% Similarity=0.107 Sum_probs=49.7
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHH
Q psy9620 135 RPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEV 205 (453)
Q Consensus 135 ~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~ 205 (453)
.+++.|.+++..++..+.+++.++.|+|||.+. ..++..+.. .+.++++++||...+..+.+.
T Consensus 189 ~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i-~~l~~~l~~-------~g~~Vl~~ApT~~Aa~~L~e~ 251 (574)
T 3e1s_A 189 GLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTT-KAVADLAES-------LGLEVGLCAPTGKAARRLGEV 251 (574)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHH-HHHHHHHHH-------TTCCEEEEESSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHH-HHHHHHHHh-------cCCeEEEecCcHHHHHHhHhh
Confidence 578999999999999999999999999999653 233333332 345699999999999887654
|
| >3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0043 Score=61.48 Aligned_cols=69 Identities=19% Similarity=0.203 Sum_probs=50.4
Q ss_pred CCCCCCCHHHHHHHHHHhc-----CCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHH
Q psy9620 131 QGFDRPTPIQAQGWPIAMS-----GSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEV 205 (453)
Q Consensus 131 ~g~~~~~~~Q~~~i~~i~~-----g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~ 205 (453)
+.|..+++-|++++..++. ...+++.|+.|||||.+. ..++..+.... ...+++++||...+..+.+.
T Consensus 21 ~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll-~~~~~~l~~~~------~~~il~~a~T~~Aa~~l~~~ 93 (459)
T 3upu_A 21 MTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLT-KFIIEALISTG------ETGIILAAPTHAAKKILSKL 93 (459)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHH-HHHHHHHHHTT------CCCEEEEESSHHHHHHHHHH
T ss_pred CccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHH-HHHHHHHHhcC------CceEEEecCcHHHHHHHHhh
Confidence 3588999999999997753 238999999999999653 33444444321 13589999999988877654
Q ss_pred H
Q psy9620 206 A 206 (453)
Q Consensus 206 ~ 206 (453)
+
T Consensus 94 ~ 94 (459)
T 3upu_A 94 S 94 (459)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=95.96 E-value=0.0084 Score=62.51 Aligned_cols=70 Identities=20% Similarity=0.115 Sum_probs=52.5
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhc
Q psy9620 135 RPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFG 210 (453)
Q Consensus 135 ~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~ 210 (453)
.+++-|.+++... ...++|.|+.|||||.+..--+...+..... ....+|+|+.|+..|.++.+.+.++.
T Consensus 2 ~L~~~Q~~av~~~--~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~----~~~~IL~lTfT~~Aa~em~~Rl~~~l 71 (673)
T 1uaa_A 2 RLNPGQQQAVEFV--TGPCLVLAGAGSGKTRVITNKIAHLIRGCGY----QARHIAAVTFTNKAAREMKERVGQTL 71 (673)
T ss_dssp CCCHHHHHHHHCC--SSEEEECCCTTSCHHHHHHHHHHHHHHHHCC----CGGGEEEEESSHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHhCC--CCCEEEEeCCCCChHHHHHHHHHHHHHhcCC----CHHHeEEEeccHHHHHHHHHHHHHHc
Confidence 5789999999753 6789999999999997754444333333111 23459999999999999999988764
|
| >1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B* | Back alignment and structure |
|---|
Probab=95.94 E-value=0.014 Score=61.33 Aligned_cols=70 Identities=16% Similarity=0.153 Sum_probs=51.8
Q ss_pred CCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHh
Q psy9620 134 DRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDF 209 (453)
Q Consensus 134 ~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~ 209 (453)
..+++-|.+++.. ....++|.|..|||||.+..--+...+.... . ....+|+|+.|+..|.++.+.+.++
T Consensus 10 ~~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~-~---~p~~IL~vTFTnkAA~Em~~Rl~~~ 79 (724)
T 1pjr_A 10 AHLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKH-V---APWNILAITFTNKAAREMRERVQSL 79 (724)
T ss_dssp TTSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTTC-C---CGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcC-C---CHHHeEEEeccHHHHHHHHHHHHHH
Confidence 4799999999875 3578999999999999775443333333211 1 2235999999999999998888775
|
| >3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A* | Back alignment and structure |
|---|
Probab=95.47 E-value=0.021 Score=63.73 Aligned_cols=70 Identities=24% Similarity=0.215 Sum_probs=52.8
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHH
Q psy9620 135 RPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARD 208 (453)
Q Consensus 135 ~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~ 208 (453)
.+|+-|.++|..- +++++|.|..|||||.+.+--++..+..... +-+.-++|+|++|+..|..+.+.+..
T Consensus 10 ~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~--~~~~~~il~~Tft~~aa~e~~~ri~~ 79 (1232)
T 3u4q_A 10 TWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEEN--PIDVDRLLVVTFTNASAAEMKHRIAE 79 (1232)
T ss_dssp CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSSS--CCCGGGEEEECSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCCC--CCCccceEEEeccHHHHHHHHHHHHH
Confidence 7899999998754 8899999999999998765445544443211 11233699999999999999887766
|
| >1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=95.19 E-value=0.041 Score=57.96 Aligned_cols=75 Identities=13% Similarity=0.194 Sum_probs=64.6
Q ss_pred CCcEEEEEcchhHHHHHHHHHHhc----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecc-CccCCCCCCCcEEEE
Q psy9620 300 ENKTIIFAETKRKVDKITKSIQNY----GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDV-AARGLDVDDVKFVIN 374 (453)
Q Consensus 300 ~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~-~~~GiDip~v~~VI~ 374 (453)
..+++|.++++.-|.++++.+... ++.+..+||+++..++..+++.+.+|..+|+|+|.. +...+++.++.+||.
T Consensus 417 g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l~lVVI 496 (780)
T 1gm5_A 417 GFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVII 496 (780)
T ss_dssp TSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCEEEE
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCCceEEe
Confidence 468999999999998888887654 789999999999999999999999999999999964 345677888888774
|
| >3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* | Back alignment and structure |
|---|
Probab=94.51 E-value=0.09 Score=50.98 Aligned_cols=76 Identities=18% Similarity=0.203 Sum_probs=64.1
Q ss_pred CCCcEEEEEcchhHHHHHHHHHHh---cCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCc----cCCCCCCCcE
Q psy9620 299 DENKTIIFAETKRKVDKITKSIQN---YGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAA----RGLDVDDVKF 371 (453)
Q Consensus 299 ~~~~~lVF~~s~~~~~~l~~~L~~---~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~----~GiDip~v~~ 371 (453)
...++||.+|++.-+.++++.+.. .++.+..+||+.+..++....+.+..++.+|+|+|.-.- .-++..++.+
T Consensus 63 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~ 142 (414)
T 3oiy_A 63 KGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDF 142 (414)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCCSE
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhccccccE
Confidence 467899999999999999999998 578999999999999999999999999999999997322 1255667787
Q ss_pred EEE
Q psy9620 372 VIN 374 (453)
Q Consensus 372 VI~ 374 (453)
||.
T Consensus 143 iVi 145 (414)
T 3oiy_A 143 VFV 145 (414)
T ss_dssp EEE
T ss_pred EEE
Confidence 774
|
| >2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A* | Back alignment and structure |
|---|
Probab=94.30 E-value=0.13 Score=49.16 Aligned_cols=70 Identities=14% Similarity=0.039 Sum_probs=54.3
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhc
Q psy9620 135 RPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFG 210 (453)
Q Consensus 135 ~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~ 210 (453)
.++|+|...+..+...+-+++..+-+.|||.+....++..+... .+..+++++|+++.|..+.+.++.+.
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~------~g~~v~~vA~t~~qA~~vf~~i~~mi 232 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFN------KDKAVGILAHKGSMSAEVLDRTKQAI 232 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHSS------SSCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHhC------CCCeEEEEeCCHHHHHHHHHHHHHHH
Confidence 78999999998775556789999999999987665555433331 35679999999999988887776654
|
| >3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A* | Back alignment and structure |
|---|
Probab=94.05 E-value=0.16 Score=51.95 Aligned_cols=73 Identities=14% Similarity=0.023 Sum_probs=56.6
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhcCCC
Q psy9620 135 RPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGSST 213 (453)
Q Consensus 135 ~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~~~~ 213 (453)
.++|+|...+..+...+-+++..+-++|||.+....++..+... .+..+++++|+++.|..+.+.++.+....
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~------~~~~i~~va~t~~qA~~~~~~i~~~i~~~ 235 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFN------KDKAVGILAHKGSMSAEVLDRTKQAIELL 235 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTS------SSCEEEEEESSHHHHHHHHHHHHHHHTTS
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhC------CCCeEEEEECCHHHHHHHHHHHHHHHHhC
Confidence 58999999998775567789999999999987655444444332 24579999999999999988888765443
|
| >1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=93.25 E-value=0.43 Score=41.44 Aligned_cols=71 Identities=15% Similarity=0.245 Sum_probs=54.2
Q ss_pred CcEEEEEcchhHHHHHHHHHHhc-----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecc-C-----ccCCCCCCC
Q psy9620 301 NKTIIFAETKRKVDKITKSIQNY-----GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDV-A-----ARGLDVDDV 369 (453)
Q Consensus 301 ~~~lVF~~s~~~~~~l~~~L~~~-----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~-~-----~~GiDip~v 369 (453)
.++||.|+++.-+.++++.+... +..+..++++.+..++.. .+..+..+|+|+|.- + ...+++.++
T Consensus 83 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~---~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~ 159 (220)
T 1t6n_A 83 VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEE---VLKKNCPHIVVGTPGRILALARNKSLNLKHI 159 (220)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHH---HHHHSCCSEEEECHHHHHHHHHTTSSCCTTC
T ss_pred EEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHH---HHhcCCCCEEEeCHHHHHHHHHhCCCCcccC
Confidence 48999999999999999888765 688999999988766543 345577899999962 1 234667788
Q ss_pred cEEEE
Q psy9620 370 KFVIN 374 (453)
Q Consensus 370 ~~VI~ 374 (453)
++||.
T Consensus 160 ~~lVi 164 (220)
T 1t6n_A 160 KHFIL 164 (220)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 87774
|
| >4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A | Back alignment and structure |
|---|
Probab=92.26 E-value=0.38 Score=52.80 Aligned_cols=76 Identities=18% Similarity=0.213 Sum_probs=63.9
Q ss_pred CCCcEEEEEcchhHHHHHHHHHHh---cCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCc-c---CCCCCCCcE
Q psy9620 299 DENKTIIFAETKRKVDKITKSIQN---YGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAA-R---GLDVDDVKF 371 (453)
Q Consensus 299 ~~~~~lVF~~s~~~~~~l~~~L~~---~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~-~---GiDip~v~~ 371 (453)
...++||.+|++.-|.++++.|.. .++.+..+||+++..+|...++.+..+..+|||+|.-.- . -+++.++.+
T Consensus 120 ~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~l~~~~l~~ 199 (1104)
T 4ddu_A 120 KGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDF 199 (1104)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHHHHTSCCSE
T ss_pred cCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHhhcccCcCE
Confidence 456899999999999999999998 467899999999999999999999999999999996321 1 145677888
Q ss_pred EEE
Q psy9620 372 VIN 374 (453)
Q Consensus 372 VI~ 374 (453)
||.
T Consensus 200 lVi 202 (1104)
T 4ddu_A 200 VFV 202 (1104)
T ss_dssp EEE
T ss_pred EEE
Confidence 775
|
| >2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1 | Back alignment and structure |
|---|
Probab=92.26 E-value=0.3 Score=53.93 Aligned_cols=74 Identities=16% Similarity=0.248 Sum_probs=63.5
Q ss_pred CCcEEEEEcchhHHHHHHHHHHhc----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEec-cCccCCCCCCCcEEE
Q psy9620 300 ENKTIIFAETKRKVDKITKSIQNY----GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATD-VAARGLDVDDVKFVI 373 (453)
Q Consensus 300 ~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~-~~~~GiDip~v~~VI 373 (453)
..+++|.|+|+.-+.++++.+.+. ++.+..+++..+..++..+++.+..|..+|+|+|. .+...+.+.++.+||
T Consensus 652 g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~l~lvI 730 (1151)
T 2eyq_A 652 HKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 730 (1151)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSSEEEEE
T ss_pred CCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCccccccceEE
Confidence 458999999999999988888753 57899999999999999999999999999999995 455567788888777
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=92.05 E-value=0.21 Score=42.03 Aligned_cols=31 Identities=23% Similarity=0.184 Sum_probs=23.0
Q ss_pred CHHHHHHHHHHh---------cCCcEEEEecCCCcchhhh
Q psy9620 137 TPIQAQGWPIAM---------SGSNMVGVAQTGSGKTLAY 167 (453)
Q Consensus 137 ~~~Q~~~i~~i~---------~g~d~li~a~TGsGKT~~~ 167 (453)
.+.|.+++..+. .++.+++++|+|+|||...
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~ 55 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLA 55 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHH
Confidence 456666665543 4688999999999999654
|
| >3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A | Back alignment and structure |
|---|
Probab=91.15 E-value=1.1 Score=39.52 Aligned_cols=71 Identities=13% Similarity=0.194 Sum_probs=53.8
Q ss_pred CCcEEEEEcchhHHHHHHHHHHhc----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEec-----cCc-cCCCCCCC
Q psy9620 300 ENKTIIFAETKRKVDKITKSIQNY----GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATD-----VAA-RGLDVDDV 369 (453)
Q Consensus 300 ~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~-~GiDip~v 369 (453)
..++||.++++.-+.++++.+... ++.+..++|+.+..+....+.. ..+|+|+|. .+. ..+++.++
T Consensus 102 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~I~v~Tp~~l~~~l~~~~~~~~~~ 177 (242)
T 3fe2_A 102 GPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLECGKTNLRRT 177 (242)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH----CCSEEEECHHHHHHHHHHTSCCCTTC
T ss_pred CCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcC----CCCEEEECHHHHHHHHHcCCCCcccc
Confidence 457999999999999888877653 7889999999887776555443 478999995 222 23577888
Q ss_pred cEEEE
Q psy9620 370 KFVIN 374 (453)
Q Consensus 370 ~~VI~ 374 (453)
.+||.
T Consensus 178 ~~lVi 182 (242)
T 3fe2_A 178 TYLVL 182 (242)
T ss_dssp CEEEE
T ss_pred cEEEE
Confidence 87774
|
| >1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A* | Back alignment and structure |
|---|
Probab=90.97 E-value=0.46 Score=47.63 Aligned_cols=59 Identities=15% Similarity=0.245 Sum_probs=55.6
Q ss_pred CCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEec
Q psy9620 300 ENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATD 358 (453)
Q Consensus 300 ~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~ 358 (453)
.+++||.++++.-+.+..+.|...++.+..+|+..+..++..++..+..+..+||++|.
T Consensus 65 ~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tp 123 (523)
T 1oyw_A 65 NGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAP 123 (523)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECH
T ss_pred CCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 46899999999999999999999999999999999999999999999999999999995
|
| >2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A* | Back alignment and structure |
|---|
Probab=90.42 E-value=0.46 Score=48.39 Aligned_cols=59 Identities=14% Similarity=0.249 Sum_probs=54.8
Q ss_pred CCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHH--hcCCCcEEEEec
Q psy9620 300 ENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEF--RNGRAGILVATD 358 (453)
Q Consensus 300 ~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f--~~g~~~vLvaT~ 358 (453)
.+.+||.+|++.-+.+.++.|...++.+..++++++..++..++..+ ..+..+|||+|.
T Consensus 84 ~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tp 144 (591)
T 2v1x_A 84 DGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 144 (591)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECH
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEECh
Confidence 46899999999999999999999999999999999999999999988 578899999997
|
| >3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=89.61 E-value=1.7 Score=38.61 Aligned_cols=71 Identities=15% Similarity=0.303 Sum_probs=53.2
Q ss_pred CCcEEEEEcchhHHHHHHHHHHhc----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecc-----Cc--cCCCCCC
Q psy9620 300 ENKTIIFAETKRKVDKITKSIQNY----GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDV-----AA--RGLDVDD 368 (453)
Q Consensus 300 ~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~-----~~--~GiDip~ 368 (453)
..++||.++++.-+.++++.+... ++.+..++++.+..++...+ ....+|+|+|.- +. ..+++.+
T Consensus 111 ~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~Tp~~l~~~l~~~~~~~l~~ 186 (249)
T 3ber_A 111 RLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL----AKKPHIIIATPGRLIDHLENTKGFNLRA 186 (249)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH----HTCCSEEEECHHHHHHHHHHSTTCCCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh----cCCCCEEEECHHHHHHHHHcCCCcCccc
Confidence 457999999999999998887764 78899999998866554333 246899999952 11 3567778
Q ss_pred CcEEEE
Q psy9620 369 VKFVIN 374 (453)
Q Consensus 369 v~~VI~ 374 (453)
+.+||.
T Consensus 187 ~~~lVi 192 (249)
T 3ber_A 187 LKYLVM 192 (249)
T ss_dssp CCEEEE
T ss_pred cCEEEE
Confidence 887774
|
| >3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus} | Back alignment and structure |
|---|
Probab=89.36 E-value=0.32 Score=47.25 Aligned_cols=45 Identities=27% Similarity=0.319 Sum_probs=32.7
Q ss_pred cEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHh
Q psy9620 152 NMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDF 209 (453)
Q Consensus 152 d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~ 209 (453)
-.++.|+.|||||... ...+.. ...+|++||++++..+.+.+.+.
T Consensus 163 v~~I~G~aGsGKTt~I----~~~~~~---------~~~lVlTpT~~aa~~l~~kl~~~ 207 (446)
T 3vkw_A 163 VVLVDGVPGCGKTKEI----LSRVNF---------EEDLILVPGRQAAEMIRRRANAS 207 (446)
T ss_dssp EEEEEECTTSCHHHHH----HHHCCT---------TTCEEEESCHHHHHHHHHHHTTT
T ss_pred EEEEEcCCCCCHHHHH----HHHhcc---------CCeEEEeCCHHHHHHHHHHhhhc
Confidence 4578999999999643 222211 12699999999999988887643
|
| >2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A | Back alignment and structure |
|---|
Probab=88.92 E-value=1.8 Score=36.78 Aligned_cols=72 Identities=15% Similarity=0.199 Sum_probs=52.2
Q ss_pred CCCcEEEEEcchhHHHHHHHHHHhc--CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecc-----Cc-cCCCCCCCc
Q psy9620 299 DENKTIIFAETKRKVDKITKSIQNY--GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDV-----AA-RGLDVDDVK 370 (453)
Q Consensus 299 ~~~~~lVF~~s~~~~~~l~~~L~~~--~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~-----~~-~GiDip~v~ 370 (453)
...++||.|+++.-+.++++.+... .+.+..++++.+..+....+. ...+|+|+|.- +. ..+++.+++
T Consensus 71 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~~ 146 (207)
T 2gxq_A 71 RKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALL----RGADAVVATPGRALDYLRQGVLDLSRVE 146 (207)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHH----HCCSEEEECHHHHHHHHHHTSSCCTTCS
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhh----CCCCEEEECHHHHHHHHHcCCcchhhce
Confidence 3568999999999999999999876 467888898877554433332 25789999952 22 246677788
Q ss_pred EEEE
Q psy9620 371 FVIN 374 (453)
Q Consensus 371 ~VI~ 374 (453)
+||.
T Consensus 147 ~iVi 150 (207)
T 2gxq_A 147 VAVL 150 (207)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7764
|
| >3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=88.81 E-value=0.3 Score=39.42 Aligned_cols=20 Identities=20% Similarity=0.064 Sum_probs=16.9
Q ss_pred HhcCCcEEEEecCCCcchhh
Q psy9620 147 AMSGSNMVGVAQTGSGKTLA 166 (453)
Q Consensus 147 i~~g~d~li~a~TGsGKT~~ 166 (453)
+....++++.+++|+|||..
T Consensus 24 ~~~~~~vll~G~~GtGKt~l 43 (143)
T 3co5_A 24 AKRTSPVFLTGEAGSPFETV 43 (143)
T ss_dssp HTCSSCEEEEEETTCCHHHH
T ss_pred hCCCCcEEEECCCCccHHHH
Confidence 34678999999999999954
|
| >3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.72 E-value=1.1 Score=39.17 Aligned_cols=72 Identities=11% Similarity=0.264 Sum_probs=48.5
Q ss_pred CCCcEEEEEcchhHHHHHHHHHHhc---CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecc------CccCCCCCCC
Q psy9620 299 DENKTIIFAETKRKVDKITKSIQNY---GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDV------AARGLDVDDV 369 (453)
Q Consensus 299 ~~~~~lVF~~s~~~~~~l~~~L~~~---~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~------~~~GiDip~v 369 (453)
...++||.++++.-+.++++.+... ++.+..++++.+..++... +. ...+|+|+|.- ....+++.++
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~iiv~Tp~~l~~~~~~~~~~~~~~ 168 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIED---IS-KGVDIIIATPGRLNDLQMNNSVNLRSI 168 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHH---HH-SCCSEEEECHHHHHHHHHTTCCCCTTC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHH---hc-CCCCEEEECHHHHHHHHHcCCcCcccc
Confidence 3568999999999999999998874 6788888988765544332 22 34889999952 1234667788
Q ss_pred cEEEE
Q psy9620 370 KFVIN 374 (453)
Q Consensus 370 ~~VI~ 374 (453)
.+||.
T Consensus 169 ~~lVi 173 (228)
T 3iuy_A 169 TYLVI 173 (228)
T ss_dssp CEEEE
T ss_pred eEEEE
Confidence 87764
|
| >1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A | Back alignment and structure |
|---|
Probab=88.31 E-value=2.2 Score=40.41 Aligned_cols=72 Identities=15% Similarity=0.249 Sum_probs=54.9
Q ss_pred CCcEEEEEcchhHHHHHHHHHHhc-----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecc-C-----ccCCCCCC
Q psy9620 300 ENKTIIFAETKRKVDKITKSIQNY-----GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDV-A-----ARGLDVDD 368 (453)
Q Consensus 300 ~~~~lVF~~s~~~~~~l~~~L~~~-----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~-~-----~~GiDip~ 368 (453)
..++||.|+++.-+.++++.+... ++.+..++|+.+..+... .+..+..+|+|+|.- + ...+++.+
T Consensus 76 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~ 152 (391)
T 1xti_A 76 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEE---VLKKNCPHIVVGTPGRILALARNKSLNLKH 152 (391)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHH---HHHHSCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHH---HHhcCCCCEEEECHHHHHHHHHcCCccccc
Confidence 458999999999999998888764 788999999988766544 345577899999952 1 23456778
Q ss_pred CcEEEE
Q psy9620 369 VKFVIN 374 (453)
Q Consensus 369 v~~VI~ 374 (453)
+.+||.
T Consensus 153 ~~~vVi 158 (391)
T 1xti_A 153 IKHFIL 158 (391)
T ss_dssp CSEEEE
T ss_pred cCEEEE
Confidence 887774
|
| >3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A* | Back alignment and structure |
|---|
Probab=88.30 E-value=1.3 Score=38.87 Aligned_cols=73 Identities=19% Similarity=0.282 Sum_probs=46.0
Q ss_pred CCCcEEEEEcchhHHHHHHHHHHhc----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEec-----cCcc-CCCCCC
Q psy9620 299 DENKTIIFAETKRKVDKITKSIQNY----GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATD-----VAAR-GLDVDD 368 (453)
Q Consensus 299 ~~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~~-GiDip~ 368 (453)
...++||.++++.-+.++++.+... +..+..++++.+..+ ..+.+..+..+|+|+|. .+.+ .+++..
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~ 173 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRN---EMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKW 173 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEEECHHHHHHHHHTTSSCSTT
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHH---HHHHHhcCCCCEEEECHHHHHHHHHhCCcCccc
Confidence 3458999999999999999988764 567778888765332 33455667789999994 2333 356777
Q ss_pred CcEEEE
Q psy9620 369 VKFVIN 374 (453)
Q Consensus 369 v~~VI~ 374 (453)
+.+||.
T Consensus 174 ~~~lVi 179 (237)
T 3bor_A 174 IKMFVL 179 (237)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 887664
|
| >1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=87.89 E-value=2.5 Score=35.89 Aligned_cols=71 Identities=13% Similarity=0.216 Sum_probs=51.4
Q ss_pred CCcEEEEEcchhHHHHHHHHHHhc-----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecc-----Ccc-CCCCCC
Q psy9620 300 ENKTIIFAETKRKVDKITKSIQNY-----GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDV-----AAR-GLDVDD 368 (453)
Q Consensus 300 ~~~~lVF~~s~~~~~~l~~~L~~~-----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~-----~~~-GiDip~ 368 (453)
..++||.|+++.-+.++++.+... +..+..++++.+..+....+ ....+|+|+|.- +.. .+++.+
T Consensus 71 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~i~v~T~~~l~~~~~~~~~~~~~ 146 (206)
T 1vec_A 71 NIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRL----DDTVHVVIATPGRILDLIKKGVAKVDH 146 (206)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHT----TSCCSEEEECHHHHHHHHHTTCSCCTT
T ss_pred CeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhc----CCCCCEEEeCHHHHHHHHHcCCcCccc
Confidence 458999999999999998888754 57888899988765543222 356889999962 222 346677
Q ss_pred CcEEEE
Q psy9620 369 VKFVIN 374 (453)
Q Consensus 369 v~~VI~ 374 (453)
+.+||.
T Consensus 147 ~~~lVi 152 (206)
T 1vec_A 147 VQMIVL 152 (206)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 777664
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=87.78 E-value=0.33 Score=39.25 Aligned_cols=20 Identities=10% Similarity=0.089 Sum_probs=17.1
Q ss_pred hcCCcEEEEecCCCcchhhh
Q psy9620 148 MSGSNMVGVAQTGSGKTLAY 167 (453)
Q Consensus 148 ~~g~d~li~a~TGsGKT~~~ 167 (453)
..+.++++.+|+|+|||..+
T Consensus 22 ~~~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHH
Confidence 46789999999999999654
|
| >1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=87.42 E-value=9.9 Score=33.39 Aligned_cols=70 Identities=17% Similarity=0.203 Sum_probs=50.5
Q ss_pred CcEEEEEcchhHHHHHHHHHHhc----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecc-C-----ccCCCCCCCc
Q psy9620 301 NKTIIFAETKRKVDKITKSIQNY----GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDV-A-----ARGLDVDDVK 370 (453)
Q Consensus 301 ~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~-~-----~~GiDip~v~ 370 (453)
.++||.|+++.-+.++++.+... ++.+..++++.+..+....+ ....+|+|+|.- + ...+++..+.
T Consensus 101 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~ 176 (253)
T 1wrb_A 101 PKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREV----QMGCHLLVATPGRLVDFIEKNKISLEFCK 176 (253)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHH----SSCCSEEEECHHHHHHHHHTTSBCCTTCC
T ss_pred ceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh----CCCCCEEEECHHHHHHHHHcCCCChhhCC
Confidence 58999999999999998887754 56788889887755443322 346889999962 1 1235777888
Q ss_pred EEEE
Q psy9620 371 FVIN 374 (453)
Q Consensus 371 ~VI~ 374 (453)
+||.
T Consensus 177 ~lVi 180 (253)
T 1wrb_A 177 YIVL 180 (253)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7764
|
| >3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=87.00 E-value=2.5 Score=37.84 Aligned_cols=71 Identities=15% Similarity=0.186 Sum_probs=51.9
Q ss_pred CCcEEEEEcchhHHHHHHHHHHhc----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEec-----cCc--cCCCCCC
Q psy9620 300 ENKTIIFAETKRKVDKITKSIQNY----GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATD-----VAA--RGLDVDD 368 (453)
Q Consensus 300 ~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~--~GiDip~ 368 (453)
..++||.++++.-+.++++.+... +..+..++|+....+.... +..+ .+|+|+|. .+. ..+++.+
T Consensus 126 ~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~-~~Iiv~Tp~~l~~~~~~~~~~~~~~ 201 (262)
T 3ly5_A 126 GTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQK---LGNG-INIIVATPGRLLDHMQNTPGFMYKN 201 (262)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHH---HHHC-CSEEEECHHHHHHHHHHCTTCCCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHH---hcCC-CCEEEEcHHHHHHHHHccCCccccc
Confidence 567999999999999999988764 5677888998876554433 3333 89999994 121 2467788
Q ss_pred CcEEEE
Q psy9620 369 VKFVIN 374 (453)
Q Consensus 369 v~~VI~ 374 (453)
+.+||.
T Consensus 202 l~~lVi 207 (262)
T 3ly5_A 202 LQCLVI 207 (262)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 887764
|
| >2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=85.07 E-value=2 Score=37.58 Aligned_cols=70 Identities=16% Similarity=0.199 Sum_probs=49.5
Q ss_pred CCcEEEEEcchhHHHHHHHHHHhc----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecc-C----cc--CCCCCC
Q psy9620 300 ENKTIIFAETKRKVDKITKSIQNY----GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDV-A----AR--GLDVDD 368 (453)
Q Consensus 300 ~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~-~----~~--GiDip~ 368 (453)
..++||.++++.-+.++++.+... ++.+..++|+.+..+....+ ...+|+|+|.- + .. .+++.+
T Consensus 97 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp~~l~~~l~~~~~~~~~~ 171 (236)
T 2pl3_A 97 GLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTPGRLLQHMDETVSFHATD 171 (236)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECHHHHHHHHHHCSSCCCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECHHHHHHHHHhcCCccccc
Confidence 568999999999999999988865 47888999987655443322 46899999952 1 12 356677
Q ss_pred CcEEEE
Q psy9620 369 VKFVIN 374 (453)
Q Consensus 369 v~~VI~ 374 (453)
+.+||.
T Consensus 172 ~~~lVi 177 (236)
T 2pl3_A 172 LQMLVL 177 (236)
T ss_dssp CCEEEE
T ss_pred ccEEEE
Confidence 777664
|
| >1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A | Back alignment and structure |
|---|
Probab=84.62 E-value=1.8 Score=37.47 Aligned_cols=82 Identities=23% Similarity=0.239 Sum_probs=50.0
Q ss_pred HHHHHHhhhc-CCCCcEEEEEcchhHHHHHHHHHHhc----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccC--
Q psy9620 288 LFGLLNDISS-KDENKTIIFAETKRKVDKITKSIQNY----GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVA-- 360 (453)
Q Consensus 288 l~~ll~~~~~-~~~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~-- 360 (453)
+..++..+.. ....++||.++++.-+.++++.+... ++.+..++|+.+..+....+ . ..+|+|+|.-.
T Consensus 69 ~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~--~~~iiv~Tp~~l~ 143 (224)
T 1qde_A 69 SIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGL---R--DAQIVVGTPGRVF 143 (224)
T ss_dssp HHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------C---T--TCSEEEECHHHHH
T ss_pred HHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcC---C--CCCEEEECHHHHH
Confidence 3444444432 23458999999999999999888754 67888899987655443322 2 38899999621
Q ss_pred ----ccCCCCCCCcEEEE
Q psy9620 361 ----ARGLDVDDVKFVIN 374 (453)
Q Consensus 361 ----~~GiDip~v~~VI~ 374 (453)
...+++..+.+||.
T Consensus 144 ~~~~~~~~~~~~~~~iVi 161 (224)
T 1qde_A 144 DNIQRRRFRTDKIKMFIL 161 (224)
T ss_dssp HHHHTTSSCCTTCCEEEE
T ss_pred HHHHhCCcchhhCcEEEE
Confidence 23466777777764
|
| >2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A* | Back alignment and structure |
|---|
Probab=84.37 E-value=3 Score=36.31 Aligned_cols=81 Identities=16% Similarity=0.150 Sum_probs=56.7
Q ss_pred HHHHHhhhc-CCCCcEEEEEcchhHHHHHHHHHHhc-----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccC--
Q psy9620 289 FGLLNDISS-KDENKTIIFAETKRKVDKITKSIQNY-----GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVA-- 360 (453)
Q Consensus 289 ~~ll~~~~~-~~~~~~lVF~~s~~~~~~l~~~L~~~-----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~-- 360 (453)
+.++..+.. ....++||.|+++.-+.++++.+... ++.+..++|+.+..++...+ ...+|+|+|.-.
T Consensus 80 l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~Iiv~Tp~~l~ 154 (230)
T 2oxc_A 80 TIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-----KKCHIAVGSPGRIK 154 (230)
T ss_dssp HHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-----TSCSEEEECHHHHH
T ss_pred HHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-----cCCCEEEECHHHHH
Confidence 334444322 23468999999999999999988764 67889999998876654433 358999999731
Q ss_pred ----ccCCCCCCCcEEEE
Q psy9620 361 ----ARGLDVDDVKFVIN 374 (453)
Q Consensus 361 ----~~GiDip~v~~VI~ 374 (453)
...+++.++++||.
T Consensus 155 ~~~~~~~~~~~~~~~lVi 172 (230)
T 2oxc_A 155 QLIELDYLNPGSIRLFIL 172 (230)
T ss_dssp HHHHTTSSCGGGCCEEEE
T ss_pred HHHhcCCcccccCCEEEe
Confidence 13456667776664
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=83.45 E-value=0.99 Score=39.72 Aligned_cols=52 Identities=17% Similarity=0.128 Sum_probs=30.8
Q ss_pred cCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHh
Q psy9620 149 SGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDF 209 (453)
Q Consensus 149 ~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~ 209 (453)
.|.-+++.+++|+|||...+-.+...+. .+..++++.-. +...++.+.+..+
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~--------~~~~v~~~~~e-~~~~~~~~~~~~~ 73 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLK--------MGEPGIYVALE-EHPVQVRQNMAQF 73 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHH--------TTCCEEEEESS-SCHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHh--------cCCeEEEEEcc-CCHHHHHHHHHHc
Confidence 5678899999999999764333332222 12336766533 3345665555544
|
| >1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A* | Back alignment and structure |
|---|
Probab=82.65 E-value=0.8 Score=44.61 Aligned_cols=44 Identities=14% Similarity=0.220 Sum_probs=31.3
Q ss_pred cCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHH
Q psy9620 149 SGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQ 200 (453)
Q Consensus 149 ~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~ 200 (453)
...++++.|+||||||... .+++..+.. .+..++|+=|..++..
T Consensus 52 ~~~h~~i~G~tGsGKs~~~-~~li~~~~~-------~g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLL-RELAYTGLL-------RGDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGGCEEEEECTTSSHHHHH-HHHHHHHHH-------TTCEEEEEEETTHHHH
T ss_pred CcceEEEECCCCCCHHHHH-HHHHHHHHH-------CCCcEEEEeCCCchhH
Confidence 4578999999999999864 334433333 2456888889888864
|
| >1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=82.28 E-value=3.2 Score=40.21 Aligned_cols=72 Identities=28% Similarity=0.389 Sum_probs=54.1
Q ss_pred CCCCcEEEEEcchhHHHHHHHHHHhc-CC---eEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecc-Cc-----cCCCCC
Q psy9620 298 KDENKTIIFAETKRKVDKITKSIQNY-GW---AAVGIHGDKSQQERDYVLKEFRNGRAGILVATDV-AA-----RGLDVD 367 (453)
Q Consensus 298 ~~~~~~lVF~~s~~~~~~l~~~L~~~-~~---~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~-~~-----~GiDip 367 (453)
....++||.|+++.-+..+++.+.+. +. .+..+||+....++..... ..+|+|+|.- +. .-+...
T Consensus 50 ~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~-----~~~ivv~T~~~l~~~~~~~~~~~~ 124 (494)
T 1wp9_A 50 KYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWA-----RAKVIVATPQTIENDLLAGRISLE 124 (494)
T ss_dssp HSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSCCTT
T ss_pred cCCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhcc-----CCCEEEecHHHHHHHHhcCCcchh
Confidence 34679999999999999999998875 55 8999999998887655443 4689999952 22 235667
Q ss_pred CCcEEEE
Q psy9620 368 DVKFVIN 374 (453)
Q Consensus 368 ~v~~VI~ 374 (453)
++++||.
T Consensus 125 ~~~~vIi 131 (494)
T 1wp9_A 125 DVSLIVF 131 (494)
T ss_dssp SCSEEEE
T ss_pred hceEEEE
Confidence 7777764
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=82.03 E-value=0.75 Score=41.41 Aligned_cols=21 Identities=24% Similarity=0.224 Sum_probs=17.2
Q ss_pred HhcCCcEEEEecCCCcchhhh
Q psy9620 147 AMSGSNMVGVAQTGSGKTLAY 167 (453)
Q Consensus 147 i~~g~d~li~a~TGsGKT~~~ 167 (453)
+..|.-+++++|||||||...
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll 42 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTI 42 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHH
Confidence 446778899999999999653
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=81.86 E-value=1.4 Score=38.04 Aligned_cols=33 Identities=24% Similarity=0.155 Sum_probs=26.7
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEecCCCcchhhh
Q psy9620 135 RPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAY 167 (453)
Q Consensus 135 ~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~ 167 (453)
.-+.-|..++..+..|.-+.+.+|+|||||+..
T Consensus 7 pk~~g~~~~l~~i~~Ge~~~liG~nGsGKSTLl 39 (208)
T 3b85_A 7 PKTLGQKHYVDAIDTNTIVFGLGPAGSGKTYLA 39 (208)
T ss_dssp CCSHHHHHHHHHHHHCSEEEEECCTTSSTTHHH
T ss_pred cCCHhHHHHHHhccCCCEEEEECCCCCCHHHHH
Confidence 334457778888888999999999999999654
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=81.06 E-value=2.3 Score=36.15 Aligned_cols=17 Identities=24% Similarity=0.217 Sum_probs=15.1
Q ss_pred CcEEEEecCCCcchhhh
Q psy9620 151 SNMVGVAQTGSGKTLAY 167 (453)
Q Consensus 151 ~d~li~a~TGsGKT~~~ 167 (453)
+.+++++|+|+|||...
T Consensus 55 ~~~~l~G~~GtGKT~la 71 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLL 71 (202)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 78999999999999654
|
| >3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A | Back alignment and structure |
|---|
Probab=80.80 E-value=1.7 Score=41.09 Aligned_cols=19 Identities=47% Similarity=0.576 Sum_probs=16.1
Q ss_pred cCCcEEEEecCCCcchhhh
Q psy9620 149 SGSNMVGVAQTGSGKTLAY 167 (453)
Q Consensus 149 ~g~d~li~a~TGsGKT~~~ 167 (453)
....+++.+|+|+|||..+
T Consensus 50 ~~~~vll~GppGtGKT~la 68 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CCCCEEEECCTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 4568999999999999754
|
| >3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, STR genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=80.67 E-value=22 Score=29.32 Aligned_cols=77 Identities=18% Similarity=0.324 Sum_probs=55.1
Q ss_pred hhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCC
Q psy9620 285 ENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGL 364 (453)
Q Consensus 285 ~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gi 364 (453)
...+.+.+.. .......+-|.|.+..++..+.+.|...++++..+..+.. .-...|.|.|--.+.|+
T Consensus 47 ~~~i~~~I~~-~~~g~~~iAVL~r~~~~~~~l~~~L~~~gi~~~~l~~~~~------------~~~~~v~v~t~~~~KGl 113 (174)
T 3dmn_A 47 VDQVVDQLAM-NDSERDTTAIIGKSLAECEALTKALKARGEQVTLIQTENQ------------RLAPGVIVVPSFLAKGL 113 (174)
T ss_dssp HHHHHHHHHH-HHHTTCCEEEEESSHHHHHHHHHHHHTTTCCEEECSSCC-------------CCCSSEEEEEGGGCTTC
T ss_pred HHHHHHHHHH-hccCCCcEEEEecCHHHHHHHHHHHHHcCCcceeeccccc------------ccCCCeEEEEccccCCc
Confidence 3444444444 2223567899999999999999999999998877765431 12347999999999999
Q ss_pred CCCCCcEEEEcCC
Q psy9620 365 DVDDVKFVINFDY 377 (453)
Q Consensus 365 Dip~v~~VI~~d~ 377 (453)
.+ +.||.+++
T Consensus 114 Ef---~~V~~~~~ 123 (174)
T 3dmn_A 114 EF---DAVIVWNA 123 (174)
T ss_dssp CE---EEEEEETC
T ss_pred CC---CEEEEecC
Confidence 87 55565554
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=80.39 E-value=1.6 Score=43.47 Aligned_cols=39 Identities=18% Similarity=0.058 Sum_probs=26.1
Q ss_pred HHHHHCCCCCCCHHHHHHHHH-HhcCCcEEEEecCCCcchhh
Q psy9620 126 KEVKRQGFDRPTPIQAQGWPI-AMSGSNMVGVAQTGSGKTLA 166 (453)
Q Consensus 126 ~~l~~~g~~~~~~~Q~~~i~~-i~~g~d~li~a~TGsGKT~~ 166 (453)
..+.+.|. +++.+..-+.. +..+..+++++|||||||..
T Consensus 237 ~~l~~~G~--~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTl 276 (511)
T 2oap_1 237 IDLIEKGT--VPSGVLAYLWLAIEHKFSAIVVGETASGKTTT 276 (511)
T ss_dssp HHHHHTTS--SCHHHHHHHHHHHHTTCCEEEEESTTSSHHHH
T ss_pred hhHHhcCC--CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 34445442 44545444443 45788999999999999964
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 453 | ||||
| d1gkub2 | 248 | c.37.1.16 (B:251-498) Helicase-like "domain" of re | 1e-34 | |
| d1a1va2 | 299 | c.37.1.14 (A:326-624) HCV helicase domain {Human h | 6e-34 | |
| d1wp9a2 | 286 | c.37.1.19 (A:201-486) putative ATP-dependent RNA h | 8e-33 | |
| d2bmfa2 | 305 | c.37.1.14 (A:178-482) Dengue virus helicase {Dengu | 5e-30 | |
| d1fuka_ | 162 | c.37.1.19 (A:) Initiation factor 4a {Baker's yeast | 2e-29 | |
| d1hv8a2 | 155 | c.37.1.19 (A:211-365) Putative DEAD box RNA helica | 4e-29 | |
| d1wrba1 | 238 | c.37.1.19 (A:164-401) putative ATP-dependent RNA h | 2e-25 | |
| d2j0sa2 | 168 | c.37.1.19 (A:244-411) Probable ATP-dependent RNA h | 3e-25 | |
| d1oywa3 | 200 | c.37.1.19 (A:207-406) RecQ helicase domain {Escher | 9e-22 | |
| d2rb4a1 | 168 | c.37.1.19 (A:307-474) ATP-dependent RNA helicase D | 2e-21 | |
| d2g9na1 | 218 | c.37.1.19 (A:21-238) Initiation factor 4a {Human ( | 2e-21 | |
| d2g9na1 | 218 | c.37.1.19 (A:21-238) Initiation factor 4a {Human ( | 2e-08 | |
| d2fwra1 | 200 | c.37.1.19 (A:257-456) DNA repair protein RAD25 {Ar | 3e-20 | |
| d1gkub1 | 237 | c.37.1.16 (B:1-250) Helicase-like "domain" of reve | 5e-20 | |
| d1gkub1 | 237 | c.37.1.16 (B:1-250) Helicase-like "domain" of reve | 0.002 | |
| d1jr6a_ | 138 | c.37.1.14 (A:) HCV helicase domain {Human hepatiti | 2e-19 | |
| d2j0sa1 | 222 | c.37.1.19 (A:22-243) Probable ATP-dependent RNA he | 4e-19 | |
| d2j0sa1 | 222 | c.37.1.19 (A:22-243) Probable ATP-dependent RNA he | 7e-09 | |
| d1s2ma2 | 171 | c.37.1.19 (A:252-422) Putative ATP-dependent RNA h | 1e-18 | |
| d1qdea_ | 212 | c.37.1.19 (A:) Initiation factor 4a {Baker's yeast | 1e-18 | |
| d1qdea_ | 212 | c.37.1.19 (A:) Initiation factor 4a {Baker's yeast | 6e-08 | |
| d2p6ra3 | 202 | c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus | 1e-18 | |
| d1hv8a1 | 208 | c.37.1.19 (A:3-210) Putative DEAD box RNA helicase | 8e-18 | |
| d1t5la2 | 181 | c.37.1.19 (A:415-595) Nucleotide excision repair e | 3e-17 | |
| d1t5ia_ | 168 | c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP5 | 1e-16 | |
| d1c4oa2 | 174 | c.37.1.19 (A:410-583) Nucleotide excision repair e | 2e-16 | |
| d1t6na_ | 207 | c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP5 | 2e-16 | |
| d1t6na_ | 207 | c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP5 | 2e-08 | |
| d1veca_ | 206 | c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Huma | 2e-16 | |
| d1veca_ | 206 | c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Huma | 1e-08 | |
| d1q0ua_ | 209 | c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR | 3e-15 | |
| d1q0ua_ | 209 | c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR | 3e-09 | |
| d1s2ma1 | 206 | c.37.1.19 (A:46-251) Putative ATP-dependent RNA he | 8e-14 | |
| d1s2ma1 | 206 | c.37.1.19 (A:46-251) Putative ATP-dependent RNA he | 2e-09 | |
| d1oywa2 | 206 | c.37.1.19 (A:1-206) RecQ helicase domain {Escheric | 4e-12 | |
| d1oywa2 | 206 | c.37.1.19 (A:1-206) RecQ helicase domain {Escheric | 0.003 | |
| d2p6ra4 | 201 | c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglob | 5e-11 | |
| d1gm5a4 | 206 | c.37.1.19 (A:550-755) RecG helicase domain {Thermo | 1e-10 | |
| d1wp9a1 | 200 | c.37.1.19 (A:1-200) putative ATP-dependent RNA hel | 4e-09 | |
| d1yksa2 | 299 | c.37.1.14 (A:325-623) YFV helicase domain {Yellow | 8e-09 | |
| d1tf5a4 | 175 | c.37.1.19 (A:396-570) Translocation ATPase SecA, n | 1e-06 | |
| d1z3ix1 | 346 | c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fi | 1e-04 | |
| d1a1va1 | 136 | c.37.1.14 (A:190-325) HCV helicase domain {Human h | 3e-04 |
| >d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 248 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 127 bits (320), Expect = 1e-34
Identities = 27/167 (16%), Positives = 59/167 (35%), Gaps = 19/167 (11%)
Query: 272 IQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIH 331
++ V +V E + L +L + + II+A T + ++I +S++N
Sbjct: 1 VRNVEDVAVNDESISTLSSILEKLGTG----GIIYARTGEEAEEIYESLKN------KFR 50
Query: 332 GDKSQQERDYVLKEFRNGRAGILVAT----DVAARGLDV-DDVKFVINFDYPNNSEDYIH 386
+ ++F G L+ T RGLD+ + ++F + P+ +
Sbjct: 51 IGIVTATKKGDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAVFVGCPS----FRV 106
Query: 387 RIGRTGRSDNTGTSYTFFTQQNSRQAKDLIDVLTESNHPVDPKLSAL 433
I + +N + + L+ + V L +
Sbjct: 107 TIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKV 153
|
| >d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Length = 299 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Score = 126 bits (319), Expect = 6e-34
Identities = 27/159 (16%), Positives = 46/159 (28%), Gaps = 20/159 (12%)
Query: 262 GSLTLSANH-NIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSI 320
GS+T H NI++V E +G + + +IF +K+K D++ +
Sbjct: 2 GSVT--VPHPNIEEVALST---TGEIPFYGKAIPLEVIKGGRHLIFCHSKKKCDELAAKL 56
Query: 321 QNYGWAAVGIHGDKSQ----------QERDYVLKEFRNGRAGILVATDVAARGLDVDD-- 368
G AV + L G ++ +
Sbjct: 57 VALGINAVAYYRGLDVSVIPTSGDVVVVATDALMTGFTGDFDSVIDCNTCVTQTVDFSLD 116
Query: 369 -VKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQ 406
+ P ++ R GRTGR G
Sbjct: 117 PTFTIETTTLPQDAVSRTQRRGRTGR-GKPGIYRFVAPG 154
|
| >d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 286 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Score = 123 bits (309), Expect = 8e-33
Identities = 41/155 (26%), Positives = 65/155 (41%), Gaps = 10/155 (6%)
Query: 267 SANHNIQQVVEVCAEHEKENKLFGLLNDISSKDEN-KTIIFAETKRKVDKITKSIQNYGW 325
A + Q E+ +H K +KL ++ + + +N K I+F + KI + G
Sbjct: 127 KAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGI 186
Query: 326 AAVGIHGDKSQQERDY--------VLKEFRNGRAGILVATDVAARGLDVDDVKFVINFDY 377
A G S++ +L EF G +LVAT V GLDV +V V+ ++
Sbjct: 187 KAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEP 246
Query: 378 PNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQA 412
++ I R GRTGR G + +A
Sbjct: 247 VPSAIRSIQRRGRTGR-HMPGRVIILMAKGTRDEA 280
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Score = 116 bits (290), Expect = 5e-30
Identities = 44/304 (14%), Positives = 82/304 (26%), Gaps = 56/304 (18%)
Query: 149 SGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARD 208
+ G+GKT Y+ + G L+LAPTR +A +++E R
Sbjct: 8 KKRLTIMDLHPGAGKTKRYLPAIVREAI-------KRGLRTLILAPTRVVAAEMEEALRG 60
Query: 209 FG--SSTYLRSTCVYGGASKGPQPDRQVL--MWSATWPREVQKLAED---FLDSYIQINI 261
T G + S + D F D
Sbjct: 61 LPIRYQTPAIRAEHTGREIVDLMCHATFTMRLLSPIRVPNYNLIIMDEAHFTDPASIAAR 120
Query: 262 GSLTLSANHNIQQVVEVCA-------------------EHEKENKLFGLLNDISSKDENK 302
G ++ + + A E E + + ++ + + K
Sbjct: 121 GYISTRVEMGEAAGIFMTATPPGSRDPFPQSNAPIMDEEREIPERSWNSGHEWVTDFKGK 180
Query: 303 TIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAAR 362
T+ F + + + I ++ G + + E + +V TD++
Sbjct: 181 TVWFVPSIKAGNDIAACLRKNGKKVIQLSRKTFDSEYIKTRTNDWD----FVVTTDISEM 236
Query: 363 GLDVD---------DVKFVINFDYPNNSE----------DYIHRIGRTGRSDNTGTSYTF 403
G + +K VI D R GR GR+
Sbjct: 237 GANFKAERVIDPRRCMKPVILTDGEERVILAGPMPVTHSSAAQRRGRVGRNPKNENDQYI 296
Query: 404 FTQQ 407
+ +
Sbjct: 297 YMGE 300
|
| >d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 110 bits (275), Expect = 2e-29
Identities = 59/163 (36%), Positives = 90/163 (55%), Gaps = 3/163 (1%)
Query: 273 QQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHG 332
Q V V E K L L + I + +IF T+RKV+++T ++N + I+
Sbjct: 3 QFYVNVEEEEYKYECLTDLYDSI---SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYS 59
Query: 333 DKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTG 392
D QQERD ++KEFR+G + IL++TD+ ARG+DV V VIN+D P N E+YIHRIGR G
Sbjct: 60 DLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGG 119
Query: 393 RSDNTGTSYTFFTQQNSRQAKDLIDVLTESNHPVDPKLSALAS 435
R G + F T ++ ++L + + ++ L +
Sbjct: 120 RFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSDIATLLN 162
|
| >d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 155 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 109 bits (273), Expect = 4e-29
Identities = 52/151 (34%), Positives = 88/151 (58%), Gaps = 4/151 (2%)
Query: 269 NHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAV 328
N NI+Q E+E+ L LL + E ++F +TKR ++ +++ G+ A
Sbjct: 1 NANIEQSYVEVNENERFEALCRLLKN----KEFYGLVFCKTKRDTKELASMLRDIGFKAG 56
Query: 329 GIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRI 388
IHGD SQ +R+ V++ F+ + IL+ATDV +RG+DV+D+ VIN+ P N E Y+HRI
Sbjct: 57 AIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRI 116
Query: 389 GRTGRSDNTGTSYTFFTQQNSRQAKDLIDVL 419
GRTGR+ G + + ++ ++ + + +
Sbjct: 117 GRTGRAGKKGKAISIINRREYKKLRYIERAM 147
|
| >d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase VlgB species: Flatworm (Dugesia japonica) [TaxId: 6161]
Score = 102 bits (254), Expect = 2e-25
Identities = 65/232 (28%), Positives = 102/232 (43%), Gaps = 17/232 (7%)
Query: 107 NAPNPITEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLA 166
+A N I F E + + + RPTPIQ P + +++ AQTGSGKT A
Sbjct: 15 SATNVIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAA 74
Query: 167 YMLPAIVHI----NHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGSSTYLRSTCVYG 222
+++P I H+ +Q + P L+LAPTRELA QI ++ F +T LRS VYG
Sbjct: 75 FLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYG 134
Query: 223 GASKGPQPDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEH 282
GA Q R+V M +L I ++L I
Sbjct: 135 GADTHSQI-REVQMGCHLLVATPGRL-------VDFIEKNKISLEFCKYIVLDEADRMLD 186
Query: 283 EK-ENKLFGLLNDIS--SKDENKTIIFAET-KRKVDKITKSI-QNYGWAAVG 329
E ++ ++ + + S +T++F+ T +++ K+ NY + VG
Sbjct: 187 MGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVG 238
|
| >d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Score = 99.6 bits (247), Expect = 3e-25
Identities = 63/171 (36%), Positives = 95/171 (55%), Gaps = 7/171 (4%)
Query: 264 LTLSANHNIQQ-VVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQN 322
LTL I+Q V V E K + L L + + + +IF TKRKVD +T+ ++
Sbjct: 3 LTL---EGIKQFFVAVEREEWKFDTLCDLYDTL---TITQAVIFCNTKRKVDWLTEKMRE 56
Query: 323 YGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVINFDYPNNSE 382
+ +HGD Q+ER+ ++KEFR+G + +L++TDV ARGLDV V +IN+D PNN E
Sbjct: 57 ANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRE 116
Query: 383 DYIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDLIDVLTESNHPVDPKLSAL 433
YIHRIGR+GR G + F + R +D+ + + ++ L
Sbjct: 117 LYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADL 167
|
| >d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Score = 90.5 bits (223), Expect = 9e-22
Identities = 36/155 (23%), Positives = 66/155 (42%), Gaps = 5/155 (3%)
Query: 271 NIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGI 330
NI+ ++ EK L L+ + + II+ ++ KV+ +Q+ G +A
Sbjct: 6 NIRYML-----MEKFKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAY 60
Query: 331 HGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGR 390
H R V ++F+ I+VAT G++ +V+FV++FD P N E Y GR
Sbjct: 61 HAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGR 120
Query: 391 TGRSDNTGTSYTFFTQQNSRQAKDLIDVLTESNHP 425
GR + F+ + + ++ +
Sbjct: 121 AGRDGLPAEAMLFYDPADMAWLRRCLEEKPQGQLQ 155
|
| >d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} Length = 218 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Human (Homo sapiens) [TaxId: 9606]
Score = 90.3 bits (223), Expect = 2e-21
Identities = 33/118 (27%), Positives = 56/118 (47%), Gaps = 5/118 (4%)
Query: 104 LKGNAPNPITEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGK 163
++ N + F + N + +L+ + GF++P+ IQ + + G +++ AQ+G+GK
Sbjct: 3 IESNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGK 62
Query: 164 TLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGSSTYLRSTCVY 221
T + + + I + LVLAPTRELAQQIQ+V G
Sbjct: 63 TATFAISILQQIELDLK-----ATQALVLAPTRELAQQIQKVVMALGDYMGASCHACI 115
|
| >d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} Length = 218 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.2 bits (124), Expect = 2e-08
Identities = 10/33 (30%), Positives = 20/33 (60%)
Query: 230 PDRQVLMWSATWPREVQKLAEDFLDSYIQINIG 262
+ QV++ SAT P +V ++ + F+ I+I +
Sbjct: 185 SNTQVVLLSATMPSDVLEVTKKFMRDPIRILVK 217
|
| >d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 86.5 bits (213), Expect = 3e-20
Identities = 31/123 (25%), Positives = 54/123 (43%), Gaps = 5/123 (4%)
Query: 283 EKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYV 342
+NK+ L + ++K IIF V +I+K + I S++ER+ +
Sbjct: 76 NSKNKIRKLREILERHRKDKIIIFTRHNELVYRISKV-----FLIPAITHRTSREEREEI 130
Query: 343 LKEFRNGRAGILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYT 402
L+ FR GR +V++ V G+DV D + ++ +YI R+GR R
Sbjct: 131 LEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAV 190
Query: 403 FFT 405
+
Sbjct: 191 LYE 193
|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 237 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 86.9 bits (214), Expect = 5e-20
Identities = 27/154 (17%), Positives = 47/154 (30%), Gaps = 15/154 (9%)
Query: 108 APNPITEFAEANFPDYVLKEVK---RQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKT 164
A + F E D++LKE R+ P IQ + + A TG GKT
Sbjct: 17 AAASLCLFPE----DFLLKEFVEFFRKCVGEPRAIQKMWAKRILRKESFAATAPTGVGKT 72
Query: 165 LAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGSSTYLRSTCVYGGA 224
+ ++ + V+ PT L Q E R + + + + G
Sbjct: 73 SFGLAMSLFLALKGKR--------CYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYY 124
Query: 225 SKGPQPDRQVLMWSATWPREVQKLAEDFLDSYIQ 258
+ ++ FL + +
Sbjct: 125 HGRIPKREKENFMQNLRNFKIVITTTQFLSKHYR 158
|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 237 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 37.6 bits (86), Expect = 0.002
Identities = 6/40 (15%), Positives = 17/40 (42%), Gaps = 3/40 (7%)
Query: 228 PQPDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLS 267
+ +++ +AT + + L + +IGS ++
Sbjct: 201 GEARGCLMVSTATAKKGKKAELFRQL---LNFDIGSSRIT 237
|
| >d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Length = 138 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Score = 82.4 bits (203), Expect = 2e-19
Identities = 32/147 (21%), Positives = 52/147 (35%), Gaps = 16/147 (10%)
Query: 262 GSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQ 321
GS+T + NI++V E +G + + +IF +K+K D++ +
Sbjct: 1 GSVT-VPHPNIEEVAL---STTGEIPFYGKAIPLEVIKGGRHLIFCHSKKKCDELAAKLV 56
Query: 322 NYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDD---VKFVINFDYP 378
G AV + ++VATD G D + + P
Sbjct: 57 ALGINAVAYYRGLDVSV-------IPTNGDVVVVATDALMTGFTGDFDSVIDCNTSDGKP 109
Query: 379 NNSEDYIHRIGRTGRSDNTGTSYTFFT 405
++ R GRTGR G Y F
Sbjct: 110 QDAVSRTQRRGRTGR-GKPGI-YRFVA 134
|
| >d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Length = 222 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Score = 83.4 bits (205), Expect = 4e-19
Identities = 27/113 (23%), Positives = 53/113 (46%), Gaps = 5/113 (4%)
Query: 109 PNPITEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYM 168
+ F + +L+ + GF++P+ IQ + + G +++ +Q+G+GKT +
Sbjct: 13 VDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFS 72
Query: 169 LPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGSSTYLRSTCVY 221
+ + ++ Q + L+LAPTRELA QIQ+ G ++
Sbjct: 73 ISVLQCLDIQVR-----ETQALILAPTRELAVQIQKGLLALGDYMNVQCHACI 120
|
| >d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Length = 222 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.7 bits (128), Expect = 7e-09
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 230 PDRQVLMWSATWPREVQKLAEDFLDSYIQINIG 262
P QV++ SAT P E+ ++ F+ I+I +
Sbjct: 189 PATQVVLISATLPHEILEMTNKFMTDPIRILVK 221
|
| >d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 80.9 bits (198), Expect = 1e-18
Identities = 51/167 (30%), Positives = 79/167 (47%), Gaps = 6/167 (3%)
Query: 264 LTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNY 323
LTL I Q E +K + L L + + N+ IIF + +V+ + K I +
Sbjct: 2 LTL---KGITQYYAFVEERQKLHCLNTLFSKL---QINQAIIFCNSTNRVELLAKKITDL 55
Query: 324 GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVINFDYPNNSED 383
G++ H QQER+ V EFR G+ LV +D+ RG+D+ V VINFD+P +E
Sbjct: 56 GYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAET 115
Query: 384 YIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDLIDVLTESNHPVDPKL 430
Y+HRIGR+GR + G + + + L + +
Sbjct: 116 YLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTEIAAIPATI 162
|
| >d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 212 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 81.8 bits (201), Expect = 1e-18
Identities = 35/129 (27%), Positives = 62/129 (48%), Gaps = 5/129 (3%)
Query: 104 LKGNAPNPITEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGK 163
++ N + +F + + +L+ V GF+ P+ IQ + + G +++ AQ+G+GK
Sbjct: 1 IQTNYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGK 60
Query: 164 TLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGSSTYLRSTCVYGG 223
T + + A+ I+ + P L+LAPTRELA QIQ+V ++ GG
Sbjct: 61 TGTFSIAALQRIDTSVK-----APQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGG 115
Query: 224 ASKGPQPDR 232
S +
Sbjct: 116 TSFVEDAEG 124
|
| >d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 212 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 51.0 bits (121), Expect = 6e-08
Identities = 10/32 (31%), Positives = 20/32 (62%)
Query: 230 PDRQVLMWSATWPREVQKLAEDFLDSYIQINI 261
P QV++ SAT P +V ++ F+ + ++I +
Sbjct: 181 PTTQVVLLSATMPNDVLEVTTKFMRNPVRILV 212
|
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 202 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 81.6 bits (200), Expect = 1e-18
Identities = 24/130 (18%), Positives = 45/130 (34%), Gaps = 9/130 (6%)
Query: 112 ITEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPA 171
+ E AE + Y + +K +G + P QA+ SG N++ T +GKTL +
Sbjct: 3 VEELAE-SISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAM 61
Query: 172 IVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGSSTYLRSTCVYGGASKGPQPD 231
+ L + P R LA + E + + S+
Sbjct: 62 VREAIKG--------GKSLYVVPLRALAGEKYESFKKWEKIGLRIGISTGDYESRDEHLG 113
Query: 232 RQVLMWSATW 241
++ + +
Sbjct: 114 DCDIIVTTSE 123
|
| >d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 208 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 79.7 bits (196), Expect = 8e-18
Identities = 44/203 (21%), Positives = 76/203 (37%), Gaps = 58/203 (28%)
Query: 115 FAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSG-SNMVGVAQTGSGKTLAYMLPAIV 173
F E N D +L ++ +GF++PT IQ + P+ ++ N+V A+TGSGKT ++ +P I
Sbjct: 6 FNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIE 65
Query: 174 HINHQ-------------------------------------------SQLKPGDGPIVL 190
+N Q+K ++
Sbjct: 66 LVNENNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALKNANIV 125
Query: 191 VLAPTRELAQQIQEVARDFGSSTYL------------RSTCVYGGASKGPQPDRQVLMWS 238
V P R + I + + Y V + D+++L++S
Sbjct: 126 VGTPGR-ILDHINRGTLNLKNVKYFILDEADEMLNMGFIKDVEKILNACN-KDKRILLFS 183
Query: 239 ATWPREVQKLAEDFLDSYIQINI 261
AT PRE+ LA+ ++ Y I
Sbjct: 184 ATMPREILNLAKKYMGDYSFIKA 206
|
| >d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} Length = 181 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Bacillus caldotenax [TaxId: 1395]
Score = 77.1 bits (189), Expect = 3e-17
Identities = 23/135 (17%), Positives = 52/135 (38%), Gaps = 5/135 (3%)
Query: 275 VVEVCAEHEKENKLFGLLNDISSKDEN--KTIIFAETKRKVDKITKSIQNYGWAAVGIHG 332
++V + ++ L+ +I + E +T++ TK+ + +T ++ G +H
Sbjct: 7 TIDV---RPTKGQIDDLIGEIRERVERNERTLVTTLTKKMAEDLTDYLKEAGIKVAYLHS 63
Query: 333 DKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTG 392
+ ER ++++ R G+ +LV ++ GLD+ +V V D R
Sbjct: 64 EIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQT 123
Query: 393 RSDNTGTSYTFFTQQ 407
+
Sbjct: 124 IGRAARNANGHVIMY 138
|
| >d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Score = 75.1 bits (183), Expect = 1e-16
Identities = 44/160 (27%), Positives = 87/160 (54%), Gaps = 4/160 (2%)
Query: 272 IQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIH 331
+QQ ++EK KLF LL+ + + N+ +IF ++ ++ + + + + A+ IH
Sbjct: 2 LQQYYVKLKDNEKNRKLFDLLDVL---EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIH 58
Query: 332 GDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRT 391
Q+ER ++F++ + ILVAT++ RG+D++ V N+D P +S+ Y+HR+ R
Sbjct: 59 RGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARA 118
Query: 392 GRSDNTGTSYTFFTQQN-SRQAKDLIDVLTESNHPVDPKL 430
GR G + TF + +N ++ D+ D + + ++
Sbjct: 119 GRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEI 158
|
| >d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} Length = 174 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Thermus thermophilus [TaxId: 274]
Score = 74.7 bits (183), Expect = 2e-16
Identities = 29/145 (20%), Positives = 57/145 (39%), Gaps = 10/145 (6%)
Query: 275 VVEVCAEHEKENKLFGLLNDISSKDEN--KTIIFAETKRKVDKITKSIQNYGWAAVGIHG 332
+V V EN++ L+ I + +T++ T R +++T + +G A +H
Sbjct: 7 LVRV---KPTENQILDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHH 63
Query: 333 DKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVI-----NFDYPNNSEDYIHR 387
+ +R ++++ R G LV ++ GLD+ +V V + + I
Sbjct: 64 ELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQT 123
Query: 388 IGRTGRSDNTGTSYTFFTQQNSRQA 412
IGR R+ + Q
Sbjct: 124 IGRAARNARGEVWLYADRVSEAMQR 148
|
| >d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Length = 207 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Score = 75.3 bits (184), Expect = 2e-16
Identities = 28/129 (21%), Positives = 54/129 (41%), Gaps = 5/129 (3%)
Query: 113 TEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAI 172
+ F + +L+ + GF+ P+ +Q + P A+ G +++ A++G GKT ++L +
Sbjct: 1 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATL 60
Query: 173 VHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGSSTYLRSTCVYGGASKGPQPDR 232
+ + VLV+ TRELA QI + F V+ G + +
Sbjct: 61 QQLEPVTG-----QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEE 115
Query: 233 QVLMWSATW 241
+
Sbjct: 116 VLKKNCPHI 124
|
| >d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Length = 207 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.6 bits (125), Expect = 2e-08
Identities = 9/32 (28%), Positives = 21/32 (65%)
Query: 230 PDRQVLMWSATWPREVQKLAEDFLDSYIQINI 261
++QV+M+SAT +E++ + F+ ++I +
Sbjct: 176 HEKQVMMFSATLSKEIRPVCRKFMQDPMEIFV 207
|
| >d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} Length = 206 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEAD box RNA helicase rck/p54 species: Human (Homo sapiens) [TaxId: 9606]
Score = 75.4 bits (184), Expect = 2e-16
Identities = 29/125 (23%), Positives = 58/125 (46%), Gaps = 5/125 (4%)
Query: 113 TEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAI 172
EF + +L + G+++P+PIQ + PIA+SG +++ A+ G+GK+ AY++P +
Sbjct: 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLL 62
Query: 173 VHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGSSTYLRSTCVYGGASKGPQPDR 232
++ + +V+ PTRELA Q+ ++ G +
Sbjct: 63 ERLDLKKD-----NIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIM 117
Query: 233 QVLMW 237
++
Sbjct: 118 RLDDT 122
|
| >d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} Length = 206 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEAD box RNA helicase rck/p54 species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.7 bits (125), Expect = 1e-08
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 230 PDRQVLMWSATWPREVQKLAEDFLDSYIQIN 260
+RQ+L++SAT+P VQK L+ +IN
Sbjct: 176 KNRQILLYSATFPLSVQKFMNSHLEKPYEIN 206
|
| >d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]} Length = 209 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable DEAD box RNA helicase YqfR species: Bacillus stearothermophilus [TaxId: 1422]
Score = 72.4 bits (176), Expect = 3e-15
Identities = 28/110 (25%), Positives = 53/110 (48%), Gaps = 1/110 (0%)
Query: 113 TEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAI 172
T+F F ++++ +K F +PT IQ + P A+ G +MVG +QTG+GKT AY+LP I
Sbjct: 1 TQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLP-I 59
Query: 173 VHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGSSTYLRSTCVYG 222
+ + + ++ + ++ + + + C+ G
Sbjct: 60 MEKIKPERAEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIG 109
|
| >d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]} Length = 209 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable DEAD box RNA helicase YqfR species: Bacillus stearothermophilus [TaxId: 1422]
Score = 54.7 bits (130), Expect = 3e-09
Identities = 7/32 (21%), Positives = 21/32 (65%)
Query: 230 PDRQVLMWSATWPREVQKLAEDFLDSYIQINI 261
D Q+L++SAT P +++ + ++++ +++
Sbjct: 177 KDLQMLVFSATIPEKLKPFLKKYMENPTFVHV 208
|
| >d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 206 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 68.1 bits (165), Expect = 8e-14
Identities = 30/108 (27%), Positives = 55/108 (50%), Gaps = 5/108 (4%)
Query: 115 FAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVH 174
F + +L + GF++P+PIQ + P+A++G +++ A+ G+GKT A+++P +
Sbjct: 3 FEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEK 62
Query: 175 INHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGSSTYLRSTCVYG 222
+ + L++ PTRELA Q +V R G + G
Sbjct: 63 VKPKLN-----KIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTG 105
|
| >d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 206 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 55.0 bits (131), Expect = 2e-09
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 230 PDRQVLMWSATWPREVQKLAEDFLDSYIQINIG 262
P Q L++SAT+P V++ L +IN+
Sbjct: 173 PTHQSLLFSATFPLTVKEFMVKHLHKPYEINLM 205
|
| >d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} Length = 206 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Score = 62.7 bits (151), Expect = 4e-12
Identities = 19/113 (16%), Positives = 44/113 (38%), Gaps = 12/113 (10%)
Query: 112 ITEFAEANFPDYVLKEVKRQ-GFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLP 170
+ + N + ++ G+ + P Q + +SG + + V TG GK+L Y +P
Sbjct: 1 MAQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIP 60
Query: 171 AIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGSSTYLRSTCVYGG 223
A++ + +V++P L + + + G + ++
Sbjct: 61 ALLLN-----------GLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTRE 102
|
| >d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} Length = 206 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Score = 36.9 bits (84), Expect = 0.003
Identities = 8/34 (23%), Positives = 13/34 (38%), Gaps = 3/34 (8%)
Query: 230 PDRQVLMWSATWPREVQKLAEDFL---DSYIQIN 260
P + +AT ++ L D IQI+
Sbjct: 173 PTLPFMALTATADDTTRQDIVRLLGLNDPLIQIS 206
|
| >d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 201 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 59.5 bits (143), Expect = 5e-11
Identities = 26/180 (14%), Positives = 55/180 (30%), Gaps = 40/180 (22%)
Query: 274 QVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYG--------- 324
++ + + K L+ + +++ ++F T+R +K +
Sbjct: 15 ELFDGAFSTSRRVKFEELVEECVAENG-GVLVFESTRRGAEKTAVKLSAITAKYVENEGL 73
Query: 325 ---------------------WAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARG 363
A H +R V FR G ++VAT A G
Sbjct: 74 EKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAG 133
Query: 364 LDVDDVKFVI-------NFDYPNNSEDYIHRIGRTGRS--DNTGTSYTFFTQQNSRQAKD 414
+++ + ++ + +Y GR GR D G + +++ A
Sbjct: 134 VNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDREIAVK 193
|
| >d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} Length = 206 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Score = 58.7 bits (141), Expect = 1e-10
Identities = 34/143 (23%), Positives = 53/143 (37%), Gaps = 6/143 (4%)
Query: 271 NIQQVVE-VCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVG 329
+ +V E V E + + F + I D+ E + K G
Sbjct: 14 RVNEVYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGL---- 69
Query: 330 IHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHR-I 388
+HG SQ+E+D V+ EF GR ILV+T V G+DV ++ + +H+
Sbjct: 70 MHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQLR 129
Query: 389 GRTGRSDNTGTSYTFFTQQNSRQ 411
GR GR +
Sbjct: 130 GRVGRGGQEAYCFLVVGDVGEEA 152
|
| >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Score = 54.0 bits (128), Expect = 4e-09
Identities = 42/217 (19%), Positives = 68/217 (31%), Gaps = 25/217 (11%)
Query: 130 RQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIV 189
R+ +P Q + +N + V TG GKTL M+ A + G V
Sbjct: 4 RRDLIQPRIYQEVIYAKCK-ETNCLIVLPTGLGKTLIAMMIAEYRLTKY-------GGKV 55
Query: 190 LVLAPTRELAQQIQEVARDFGSSTYLRSTCVYGGASKGPQ--PDRQVLMWSATWPREVQK 247
L+LAPT+ L Q E R + + + G S + + + AT
Sbjct: 56 LMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWARAKVIVATPQTIEND 115
Query: 248 LAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIF- 306
L + V + + + + +N +I
Sbjct: 116 LLAGRISL-------------EDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVIGL 162
Query: 307 -AETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYV 342
A +KI + I N G + + S R YV
Sbjct: 163 TASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYV 199
|
| >d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Length = 299 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Score = 54.2 bits (130), Expect = 8e-09
Identities = 22/139 (15%), Positives = 49/139 (35%), Gaps = 24/139 (17%)
Query: 297 SKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVA 356
D+ T F + R + + S++ G + V ++ ++E + + ++A
Sbjct: 33 LADKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNRKTFEREYP----TIKQKKPDFILA 88
Query: 357 TDVAARGLDVDDVKFVINFDYPNNSEDY-------------------IHRIGRTGRSDNT 397
TD+A G ++ V+ V++ R GR GR+ N
Sbjct: 89 TDIAEMGANL-CVERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNR 147
Query: 398 GTSYTFFTQQNSRQAKDLI 416
++++ S +
Sbjct: 148 DGDSYYYSEPTSENNAHHV 166
|
| >d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} Length = 175 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Bacillus subtilis [TaxId: 1423]
Score = 46.0 bits (109), Expect = 1e-06
Identities = 23/130 (17%), Positives = 53/130 (40%), Gaps = 12/130 (9%)
Query: 284 KENKLFGLLNDISSKDEN--KTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDY 341
E K + D++ + ++ + I+K ++N G ++ ++E
Sbjct: 16 MEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQI 75
Query: 342 VLKEFRNGRAGILVATDVAARGLDV---DDVK-----FVINFDYPNNSEDYIHRIGRTGR 393
+ + + G + +AT++A RG D+ + VK V+ + + GR+GR
Sbjct: 76 IEEAGQKGA--VTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGR 133
Query: 394 SDNTGTSYTF 403
+ G + +
Sbjct: 134 QGDPGITQFY 143
|
| >d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Length = 346 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Rad54-like, Rad54L species: Zebra fish (Danio rerio) [TaxId: 7955]
Score = 41.5 bits (96), Expect = 1e-04
Identities = 20/117 (17%), Positives = 47/117 (40%), Gaps = 9/117 (7%)
Query: 284 KENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVL 343
K L +L + +K ++ + + +D K +N + V + G S ++R ++
Sbjct: 102 KMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIV 161
Query: 344 KEFRNG---RAGILVATDVAARGLDVDDVKFVINFDYPNN------SEDYIHRIGRT 391
+ F N ++++ GL++ ++ FD N + + R G+
Sbjct: 162 ERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQK 218
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Length = 136 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Score = 38.7 bits (89), Expect = 3e-04
Identities = 19/108 (17%), Positives = 27/108 (25%), Gaps = 16/108 (14%)
Query: 145 PIAMSGSNMVGV--AQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQI 202
P A+ S V A TGSGK+ +PA G VLVL P+
Sbjct: 1 PPAVPQSFQVAHLHAPTGSGKST--KVPAAYA---------AQGYKVLVLNPSVAATLG- 48
Query: 203 QEVARDFGSSTYLRSTCVYGGASKGPQPDRQVLMWSATWPREVQKLAE 250
+ + G + +
Sbjct: 49 --FGAYMSKAHGVDPNIRTGVRTITTGSPITYSTYGKFLADGGCSGGA 94
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 453 | |||
| d1fuka_ | 162 | Initiation factor 4a {Baker's yeast (Saccharomyces | 100.0 | |
| d1s2ma2 | 171 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 99.98 | |
| d2j0sa2 | 168 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 99.98 | |
| d1hv8a2 | 155 | Putative DEAD box RNA helicase {Archaeon Methanoco | 99.97 | |
| d2rb4a1 | 168 | ATP-dependent RNA helicase DDX25 {Human (Homo sapi | 99.97 | |
| d1t5ia_ | 168 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 99.97 | |
| d2g9na1 | 218 | Initiation factor 4a {Human (Homo sapiens) [TaxId: | 99.96 | |
| d1oywa3 | 200 | RecQ helicase domain {Escherichia coli [TaxId: 562 | 99.96 | |
| d2j0sa1 | 222 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 99.96 | |
| d2bmfa2 | 305 | Dengue virus helicase {Dengue virus type 2 [TaxId: | 99.96 | |
| d1qdea_ | 212 | Initiation factor 4a {Baker's yeast (Saccharomyces | 99.96 | |
| d1wrba1 | 238 | putative ATP-dependent RNA helicase VlgB {Flatworm | 99.96 | |
| d1t6na_ | 207 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 99.95 | |
| d1veca_ | 206 | DEAD box RNA helicase rck/p54 {Human (Homo sapiens | 99.95 | |
| d1c4oa2 | 174 | Nucleotide excision repair enzyme UvrB {Thermus th | 99.95 | |
| d1t5la2 | 181 | Nucleotide excision repair enzyme UvrB {Bacillus c | 99.94 | |
| d1hv8a1 | 208 | Putative DEAD box RNA helicase {Archaeon Methanoco | 99.93 | |
| d1s2ma1 | 206 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 99.93 | |
| d1q0ua_ | 209 | Probable DEAD box RNA helicase YqfR {Bacillus stea | 99.9 | |
| d1jr6a_ | 138 | HCV helicase domain {Human hepatitis C virus (HCV) | 99.9 | |
| d2p6ra4 | 201 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 99.86 | |
| d1wp9a2 | 286 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 99.86 | |
| d1gm5a4 | 206 | RecG helicase domain {Thermotoga maritima [TaxId: | 99.83 | |
| d1gkub2 | 248 | Helicase-like "domain" of reverse gyrase {Archaeon | 99.83 | |
| d2eyqa5 | 211 | Transcription-repair coupling factor, TRCF {Escher | 99.8 | |
| d1a1va2 | 299 | HCV helicase domain {Human hepatitis C virus (HCV) | 99.79 | |
| d1oywa2 | 206 | RecQ helicase domain {Escherichia coli [TaxId: 562 | 99.78 | |
| d2p6ra3 | 202 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 99.78 | |
| d2fwra1 | 200 | DNA repair protein RAD25 {Archaeoglobus fulgidus [ | 99.75 | |
| d1gkub1 | 237 | Helicase-like "domain" of reverse gyrase {Archaeon | 99.74 | |
| d1wp9a1 | 200 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 99.56 | |
| d1z3ix1 | 346 | Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI | 99.53 | |
| d1yksa2 | 299 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 99.52 | |
| d1z5za1 | 244 | Helicase of the SNF2/Rad54 hamily {Sulfolobus solf | 99.48 | |
| d1tf5a4 | 175 | Translocation ATPase SecA, nucleotide-binding doma | 99.41 | |
| d2eyqa3 | 233 | Transcription-repair coupling factor, TRCF {Escher | 99.35 | |
| d1gm5a3 | 264 | RecG helicase domain {Thermotoga maritima [TaxId: | 99.34 | |
| d1rifa_ | 282 | DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665] | 99.22 | |
| d2fz4a1 | 206 | DNA repair protein RAD25 {Archaeoglobus fulgidus [ | 99.17 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 99.09 | |
| d1nkta4 | 219 | Translocation ATPase SecA, nucleotide-binding doma | 98.87 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 98.86 | |
| d1z3ix2 | 298 | Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI | 97.69 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 97.59 | |
| d1tf5a3 | 273 | Translocation ATPase SecA, nucleotide-binding doma | 97.54 | |
| d1z63a1 | 230 | Helicase of the SNF2/Rad54 hamily {Sulfolobus solf | 97.45 | |
| d1nkta3 | 288 | Translocation ATPase SecA, nucleotide-binding doma | 97.4 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 97.11 | |
| d1gm5a3 | 264 | RecG helicase domain {Thermotoga maritima [TaxId: | 96.96 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 96.7 | |
| d2eyqa3 | 233 | Transcription-repair coupling factor, TRCF {Escher | 96.69 | |
| d1t5la1 | 413 | Nucleotide excision repair enzyme UvrB {Bacillus c | 96.29 | |
| g1qhh.1 | 623 | DEXX box DNA helicase {Bacillus stearothermophilus | 96.2 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 94.35 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 94.2 | |
| d1c4oa1 | 408 | Nucleotide excision repair enzyme UvrB {Thermus th | 93.67 | |
| d1hv8a1 | 208 | Putative DEAD box RNA helicase {Archaeon Methanoco | 93.49 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 92.98 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 91.94 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 91.57 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 90.95 | |
| d2j0sa1 | 222 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 90.88 | |
| d2eyqa2 | 117 | Transcription-repair coupling factor, TRCF {Escher | 89.58 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 89.52 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 89.28 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 88.73 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 87.85 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 87.42 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 86.96 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 85.4 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 84.83 | |
| d1t6na_ | 207 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 84.03 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 82.02 | |
| d1veca_ | 206 | DEAD box RNA helicase rck/p54 {Human (Homo sapiens | 81.2 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 80.18 |
| >d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.8e-33 Score=238.62 Aligned_cols=160 Identities=36% Similarity=0.603 Sum_probs=141.6
Q ss_pred ceeEEEEccc-cchhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCC
Q psy9620 272 IQQVVEVCAE-HEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGR 350 (453)
Q Consensus 272 i~~~~~~~~~-~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~ 350 (453)
|+|.+..+.. ..|...|.++++.. ...++||||+++..++.+++.|...++.+..+|++|++.+|..+++.|+.|+
T Consensus 1 I~q~~~~v~~~e~K~~~L~~ll~~~---~~~k~iIF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~l~~f~~~~ 77 (162)
T d1fuka_ 1 IKQFYVNVEEEEYKYECLTDLYDSI---SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGS 77 (162)
T ss_dssp CEEEEEEEESGGGHHHHHHHHHHHT---TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS
T ss_pred CEEEEEEeCCcHHHHHHHHHHHHhC---CCCcEEEEEEEEchHHHHHHHHhhcCceEEEeccCCchhhHHHHHHHHhhcc
Confidence 4667776754 44777888887764 4568999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEeccCccCCCCCCCcEEEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcCCChHHHHHHHHHHHhcCCCCChHH
Q psy9620 351 AGILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDLIDVLTESNHPVDPKL 430 (453)
Q Consensus 351 ~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~v~~~l 430 (453)
.+||||||+++||||+|+|++||+||+|.+++.|+||+||+||.|+.|.|++|+++.+...++.+.+.++...+++|..+
T Consensus 78 ~~iLv~Tdv~~rGiDi~~v~~VI~~d~P~~~~~yihR~GR~gR~g~~g~~i~~~~~~d~~~~~~i~~~~~~~~~~ip~~~ 157 (162)
T d1fuka_ 78 SRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSDI 157 (162)
T ss_dssp CSEEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHHHHSSCCCEECCSCC
T ss_pred cceeeccccccccccCCCceEEEEeccchhHHHHHhhccccccCCCccEEEEEcCHHHHHHHHHHHHHHcCcCCCCChHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998888999887
Q ss_pred HHHH
Q psy9620 431 SALA 434 (453)
Q Consensus 431 ~~~~ 434 (453)
.++.
T Consensus 158 ~~l~ 161 (162)
T d1fuka_ 158 ATLL 161 (162)
T ss_dssp TTTT
T ss_pred HHhh
Confidence 7653
|
| >d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.98 E-value=3.9e-32 Score=233.05 Aligned_cols=161 Identities=30% Similarity=0.525 Sum_probs=150.7
Q ss_pred ccceeEEEEccccchhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcC
Q psy9620 270 HNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNG 349 (453)
Q Consensus 270 ~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g 349 (453)
..+.|++..+...+|...|.++++.. ...++||||+++..|+.++..|...++.+..+||+|++.+|..+++.|++|
T Consensus 5 ~~i~q~yi~v~~~~K~~~L~~ll~~~---~~~k~iVF~~~~~~~~~l~~~L~~~g~~~~~~h~~~~~~~r~~~~~~f~~~ 81 (171)
T d1s2ma2 5 KGITQYYAFVEERQKLHCLNTLFSKL---QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQG 81 (171)
T ss_dssp TTEEEEEEECCGGGHHHHHHHHHHHS---CCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTT
T ss_pred cceEEEEEEcCHHHHHHHHHHHHHhC---CCCceEEEEeeeehhhHhHHhhhcccccccccccccchhhhhhhhhhcccC
Confidence 56889999999888999999888764 467999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEeccCccCCCCCCCcEEEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcCCChHHHHHHHHHHHhcCCCCChH
Q psy9620 350 RAGILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDLIDVLTESNHPVDPK 429 (453)
Q Consensus 350 ~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~v~~~ 429 (453)
+.+|||||+++++|+|+|++++|||||+|.++..|+||+||+||.|+.|.|++|+++.+...++.+.+.+....+++|..
T Consensus 82 ~~~ilv~Td~~~~Gid~~~v~~VI~~d~p~~~~~y~qr~GR~gR~g~~g~~i~~v~~~e~~~~~~i~~~l~~~~~~~p~~ 161 (171)
T d1s2ma2 82 KVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTEIAAIPAT 161 (171)
T ss_dssp SSSEEEESSCSSSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHHHHHHHHHHHTCCCEECCSS
T ss_pred ccccccchhHhhhccccceeEEEEecCCcchHHHHHHHhhhcccCCCccEEEEEeCHHHHHHHHHHHHHHCCCCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988888888887
Q ss_pred HHHH
Q psy9620 430 LSAL 433 (453)
Q Consensus 430 l~~~ 433 (453)
+++.
T Consensus 162 ~d~~ 165 (171)
T d1s2ma2 162 IDKS 165 (171)
T ss_dssp CCGG
T ss_pred cchh
Confidence 6653
|
| >d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.98 E-value=1.7e-32 Score=233.77 Aligned_cols=160 Identities=35% Similarity=0.602 Sum_probs=145.3
Q ss_pred ccceeEEEEcccc-chhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhc
Q psy9620 270 HNIQQVVEVCAEH-EKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRN 348 (453)
Q Consensus 270 ~~i~~~~~~~~~~-~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~ 348 (453)
.+++|++..+... .|...|.++++.. ...++||||+++..|+.++..|...++.+..+|+++++.+|..+++.|++
T Consensus 6 ~~i~q~~v~v~~~~~K~~~L~~ll~~~---~~~k~iiF~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~fk~ 82 (168)
T d2j0sa2 6 EGIKQFFVAVEREEWKFDTLCDLYDTL---TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRS 82 (168)
T ss_dssp TTEEEEEEEESSTTHHHHHHHHHHHHH---TSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHH
T ss_pred CCcEEEEEEecChHHHHHHHHHHHHhC---CCCceEEEeeeHHHHHHHHHHhhhcccchhhhhhhhhHHHHHHHHHHHhc
Confidence 7788888777654 5888888888764 45699999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEeccCccCCCCCCCcEEEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcCCChHHHHHHHHHHHhcCCCCCh
Q psy9620 349 GRAGILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDLIDVLTESNHPVDP 428 (453)
Q Consensus 349 g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~v~~ 428 (453)
|+.+|||||+++++|||+|+|++|||||+|.+.+.|+||+||+||.|+.|.+++|+++.+...++.+.+.++...+++|.
T Consensus 83 g~~~iLv~Td~~~rGiDi~~v~~VIn~d~P~~~~~yihR~GR~gR~g~~G~~i~~~~~~d~~~~~~i~~~~~~~i~e~p~ 162 (168)
T d2j0sa2 83 GASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPM 162 (168)
T ss_dssp TSSCEEEECGGGSSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHHHHHHHHHTTCCCEECCS
T ss_pred CCccEEeccchhcccccccCcceEEEecCCcCHHHHHhhhccccccCCCcEEEEEECHHHHHHHHHHHHHHcCcCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999998888887777667776
Q ss_pred HHHH
Q psy9620 429 KLSA 432 (453)
Q Consensus 429 ~l~~ 432 (453)
.+.+
T Consensus 163 ~~~d 166 (168)
T d2j0sa2 163 NVAD 166 (168)
T ss_dssp CCTT
T ss_pred ChHH
Confidence 5443
|
| >d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.97 E-value=4.7e-31 Score=222.58 Aligned_cols=149 Identities=34% Similarity=0.611 Sum_probs=137.2
Q ss_pred ccceeEEEEccccchhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcC
Q psy9620 270 HNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNG 349 (453)
Q Consensus 270 ~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g 349 (453)
.+|+|.+..+...+|...|..+++. .+.++||||+++++|+.++..|...++.+..+|+++++.+|..++++|++|
T Consensus 2 ~nI~~~~i~v~~~~K~~~L~~ll~~----~~~k~IIF~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~~ 77 (155)
T d1hv8a2 2 ANIEQSYVEVNENERFEALCRLLKN----KEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQK 77 (155)
T ss_dssp SSSEEEEEECCGGGHHHHHHHHHCS----TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTT
T ss_pred CCeEEEEEEeChHHHHHHHHHHHcc----CCCCEEEEECchHHHHHHHhhhcccccccccccccchhhhhhhhhhhhhcc
Confidence 5788888888888888888877753 356899999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEeccCccCCCCCCCcEEEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcCCChHHHHHHHHHHHhc
Q psy9620 350 RAGILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDLIDVLTES 422 (453)
Q Consensus 350 ~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~ 422 (453)
+.+|||||+++++|||+|++++||+||+|.|+..|+||+||+||.|++|.+++|+++.+...++.+.+.++..
T Consensus 78 ~~~ilv~T~~~~~Gid~~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~g~~i~~~~~~d~~~~~~i~~~~~~~ 150 (155)
T d1hv8a2 78 KIRILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYIERAMKLK 150 (155)
T ss_dssp SSSEEEECTTHHHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHHHHHHHHHHTCC
T ss_pred cceeeeehhHHhhhhhhccCcEEEEecCCCCHHHHHHHHHhcCcCCCCceEEEEEchHHHHHHHHHHHHHCCC
Confidence 9999999999999999999999999999999999999999999999999999999999988888776666543
|
| >d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=1.2e-30 Score=222.51 Aligned_cols=156 Identities=28% Similarity=0.518 Sum_probs=139.8
Q ss_pred ceeEEEEccccchhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCC
Q psy9620 272 IQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRA 351 (453)
Q Consensus 272 i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~ 351 (453)
++|++..+.+.+|...|.+++... ...++||||++++.++.|++.|...++.+..+||+|++.+|..++++|++|+.
T Consensus 2 l~q~~v~~~~~~K~~~L~~ll~~~---~~~k~iIF~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~l~~F~~g~~ 78 (168)
T d1t5ia_ 2 LQQYYVKLKDNEKNRKLFDLLDVL---EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQR 78 (168)
T ss_dssp CEEEEEECCGGGHHHHHHHHHHHS---CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSC
T ss_pred cEEEEEEeChHHHHHHHHHHHHhC---CCCeEEEEEeeeecchhhhhhhccccccccccccccchhhhhhhhhhhccccc
Confidence 567888888899999999998775 45689999999999999999999999999999999999999999999999999
Q ss_pred cEEEEeccCccCCCCCCCcEEEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcCC-ChHHHHHHHHHHHhcCCCCChHH
Q psy9620 352 GILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQ-NSRQAKDLIDVLTESNHPVDPKL 430 (453)
Q Consensus 352 ~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~-~~~~~~~l~~~l~~~~~~v~~~l 430 (453)
+|||||+++++|+|+|++++||+||+|.+...|+||+||+||.|++|.|++|+++. +...+..+.+.++....++|+++
T Consensus 79 ~iLv~T~~~~~Gid~~~~~~vi~~~~p~~~~~yiqr~GR~gR~g~~g~~i~l~~~~~~~~~~~~i~~~~~~~~~elp~~~ 158 (168)
T d1t5ia_ 79 RILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEI 158 (168)
T ss_dssp SEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHHCCCEEECC---
T ss_pred eeeeccccccchhhcccchhhhhhhcccchhhHhhhhhhcccCCCccEEEEEECchHHHHHHHHHHHHHcCCcccCCchh
Confidence 99999999999999999999999999999999999999999999999999999875 45566667777776777788776
|
| >d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=1.6e-29 Score=224.99 Aligned_cols=153 Identities=29% Similarity=0.485 Sum_probs=137.6
Q ss_pred cccCCCccccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCC
Q psy9620 105 KGNAPNPITEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPG 184 (453)
Q Consensus 105 ~~~~p~p~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~ 184 (453)
+++.|+++.+|++++|++.++++|.++||..|||+|+++||.++.|+|++++||||||||++|++|+++++... .
T Consensus 4 ~~~~~e~i~sF~~l~L~~~l~~~L~~~g~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKTlayllp~l~~i~~~-----~ 78 (218)
T d2g9na1 4 ESNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELD-----L 78 (218)
T ss_dssp CCCCCCCCCCGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEEECCTTSSHHHHHHHHHHHHCCTT-----C
T ss_pred CCCCCCccCCHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcccchhhhhhhhhhhhheeccc-----c
Confidence 45567899999999999999999999999999999999999999999999999999999999999999998543 3
Q ss_pred CCcEEEEEcCCHHHHHHHHHHHHHhcCCCCceEEEEeCCccCCCC-----------------------------------
Q psy9620 185 DGPIVLVLAPTRELAQQIQEVARDFGSSTYLRSTCVYGGASKGPQ----------------------------------- 229 (453)
Q Consensus 185 ~~~~vlil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~----------------------------------- 229 (453)
.++++||++||+|||.|+++.+..+.....+.+.++.++.....+
T Consensus 79 ~~~~alil~Pt~eL~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvV~TP~rl~~~l~~~~~~~~~l~~ 158 (218)
T d2g9na1 79 KATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKM 158 (218)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHHTTTTCCEEEECC--CCCSTTTSSSSCCCSEEEECHHHHHHHHHTTSSCSTTCCE
T ss_pred cCccEEEEcccchhhhhHHHHHhhhccccceeEEeeecccchhHHHHHHhcCCCEEEEeCChhHHHHHhcCCcccccceE
Confidence 588899999999999999999999999999998888876654432
Q ss_pred --------------------------CCceEEEEeccCcHHHHHHHHHhhccceEEEec
Q psy9620 230 --------------------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIG 262 (453)
Q Consensus 230 --------------------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~ 262 (453)
.++|++++|||+++++.++++.++.+|+.+.+.
T Consensus 159 lVlDEaD~ll~~~f~~~~~~Il~~~~~~~Q~il~SAT~~~~v~~~~~~~l~~pv~i~v~ 217 (218)
T d2g9na1 159 FVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVK 217 (218)
T ss_dssp EEEESHHHHHHTTCHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHCSSCEEEECC
T ss_pred EEeeecchhhcCchHHHHHHHHHhCCCCCeEEEEEecCCHHHHHHHHHHCCCCEEEEEe
Confidence 679999999999999999999999999988764
|
| >d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Probab=99.96 E-value=1.4e-29 Score=221.38 Aligned_cols=136 Identities=23% Similarity=0.431 Sum_probs=123.1
Q ss_pred EccccchhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEe
Q psy9620 278 VCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVAT 357 (453)
Q Consensus 278 ~~~~~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT 357 (453)
+....+|.+.|..+|.. ....++||||+|+..++.|+..|...++.+..+||++++.+|..+++.|++|+.+|||||
T Consensus 11 v~~~~~k~~~L~~~l~~---~~~~~~IIF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~ilvaT 87 (200)
T d1oywa3 11 LMEKFKPLDQLMRYVQE---QRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVAT 87 (200)
T ss_dssp EEECSSHHHHHHHHHHH---TTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEC
T ss_pred EEcCCcHHHHHHHHHHh---cCCCCEEEEEeeehhhHHhhhhhccCCceeEEecCCCcHHHHHHHHHHHhcccceEEEec
Confidence 34455666667666654 345689999999999999999999999999999999999999999999999999999999
Q ss_pred ccCccCCCCCCCcEEEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcCCChHHHHHHH
Q psy9620 358 DVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDLI 416 (453)
Q Consensus 358 ~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~ 416 (453)
+++++|||+|+|++|||||+|.++++|+||+||+||.|.+|.|++|+++.+...++.++
T Consensus 88 d~~~~GiD~p~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~ai~~~~~~d~~~l~~~i 146 (200)
T d1oywa3 88 VAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCL 146 (200)
T ss_dssp TTSCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHH
T ss_pred chhhhccCCCCCCEEEECCCccchHHHHHHhhhhhcCCCCceEEEecCHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999988777666554
|
| >d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=7.2e-30 Score=227.42 Aligned_cols=149 Identities=28% Similarity=0.489 Sum_probs=135.0
Q ss_pred CCccccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcE
Q psy9620 109 PNPITEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPI 188 (453)
Q Consensus 109 p~p~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~ 188 (453)
.....+|++++|++.++++|+++||..|||+|+++||.+++|+|++++||||||||++|++|+++++.... ..++
T Consensus 13 ~~~~~sF~~l~L~~~l~~~L~~~g~~~pt~IQ~~aIp~il~g~dvi~~a~TGSGKTlayllPil~~l~~~~-----~~~~ 87 (222)
T d2j0sa1 13 VDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQV-----RETQ 87 (222)
T ss_dssp CCCCCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTTS-----CSCC
T ss_pred CCCCCCHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCeEEEcCcchhhhhhhcccccccccccc-----cCce
Confidence 34456899999999999999999999999999999999999999999999999999999999999886543 4788
Q ss_pred EEEEcCCHHHHHHHHHHHHHhcCCCCceEEEEeCCccCCCC---------------------------------------
Q psy9620 189 VLVLAPTRELAQQIQEVARDFGSSTYLRSTCVYGGASKGPQ--------------------------------------- 229 (453)
Q Consensus 189 vlil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~--------------------------------------- 229 (453)
+||++||+|||.|+++.+.+++...++++.+++|+.....+
T Consensus 88 ~lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~g~~~~~~~~~~l~~~~~Ilv~TPgrl~~~~~~~~~~~~~l~~lVlDE 167 (222)
T d2j0sa1 88 ALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDE 167 (222)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEET
T ss_pred eEEecchHHHHHHHHHHHHHHhCccceeEEEEeecccchhhHHHhccCCeEEeCCCCcHHhcccccccccccceeeeecc
Confidence 99999999999999999999999999999999998754322
Q ss_pred ---------------------CCceEEEEeccCcHHHHHHHHHhhccceEEEec
Q psy9620 230 ---------------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIG 262 (453)
Q Consensus 230 ---------------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~ 262 (453)
..+|+++||||++.++.++++.++.+|+.+.+.
T Consensus 168 aD~ll~~~f~~~i~~I~~~l~~~~Q~ilfSAT~~~~v~~l~~~~l~~Pv~I~V~ 221 (222)
T d2j0sa1 168 ADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVK 221 (222)
T ss_dssp HHHHTSTTTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCC
T ss_pred hhHhhhcCcHHHHHHHHHhCCCCCEEEEEEEeCCHHHHHHHHHHCCCCEEEEEe
Confidence 679999999999999999999999999887654
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Probab=99.96 E-value=2.1e-29 Score=237.61 Aligned_cols=225 Identities=19% Similarity=0.220 Sum_probs=153.2
Q ss_pred HhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhcCCCCceEEEEeCCccC
Q psy9620 147 AMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGSSTYLRSTCVYGGASK 226 (453)
Q Consensus 147 i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~ 226 (453)
+.+++++|+.||||||||++|+++++..... +++++||++||++||.|+++.++.++...... ...+....
T Consensus 6 ~~~~~~~lv~~~TGsGKT~~~l~~~~~~~~~-------~~~~~lvi~Ptr~La~q~~~~l~~~~~~~~~~--~~~~~~~~ 76 (305)
T d2bmfa2 6 FRKKRLTIMDLHPGAGKTKRYLPAIVREAIK-------RGLRTLILAPTRVVAAEMEEALRGLPIRYQTP--AIRAEHTG 76 (305)
T ss_dssp SSTTCEEEECCCTTSSTTTTHHHHHHHHHHH-------HTCCEEEEESSHHHHHHHHHHTTTSCCBCCC----------C
T ss_pred hhcCCcEEEEECCCCCHHHHHHHHHHHHHHh-------cCCEEEEEccHHHHHHHHHHHHhcCCcceeee--EEeecccC
Confidence 4578999999999999999998888876554 25579999999999999999887764221110 00000000
Q ss_pred CCC--------------------------------------------------CCceEEEEeccCcHHHHHHHHHhhccc
Q psy9620 227 GPQ--------------------------------------------------PDRQVLMWSATWPREVQKLAEDFLDSY 256 (453)
Q Consensus 227 ~~~--------------------------------------------------~~~q~v~~SAT~~~~~~~~~~~~~~~~ 256 (453)
... ...+++++|||++..... +...
T Consensus 77 ~~~i~~~t~~~l~~~~~~~~~~~~~~~vViDE~H~~~~~~~~~~~~l~~~~~~~~~~~v~~SAT~~~~~~~----~~~~- 151 (305)
T d2bmfa2 77 REIVDLMCHATFTMRLLSPIRVPNYNLIIMDEAHFTDPASIAARGYISTRVEMGEAAGIFMTATPPGSRDP----FPQS- 151 (305)
T ss_dssp CCSEEEEEHHHHHHHHTSSSCCCCCSEEEEESTTCCSHHHHHHHHHHHHHHHHTSCEEEEECSSCTTCCCS----SCCC-
T ss_pred ccccccCCcHHHHHHHhcCccccceeEEEeeeeeecchhhHHHHHHHHHhhccccceEEEeecCCCcceee----eccc-
Confidence 000 567888888887642210 0000
Q ss_pred eEEEecccccccCccceeEEEEccccchhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCH
Q psy9620 257 IQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQ 336 (453)
Q Consensus 257 ~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~ 336 (453)
...+...........+...+ ..+ ....+++||||+++++++.+++.|.+.++.+..+|+++.+
T Consensus 152 ------------~~~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~ 214 (305)
T d2bmfa2 152 ------------NAPIMDEEREIPERSWNSGH----EWV-TDFKGKTVWFVPSIKAGNDIAACLRKNGKKVIQLSRKTFD 214 (305)
T ss_dssp ------------SSCEEEEECCCCCSCCSSCC----HHH-HSSCSCEEEECSCHHHHHHHHHHHHHHTCCCEECCTTCHH
T ss_pred ------------CCcceEEEEeccHHHHHHHH----HHH-HhhCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeCCcChH
Confidence 00011111111111111111 111 1246789999999999999999999999999999999866
Q ss_pred HHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEE----------EcCC----------CCChhHHHHhhhcccCCCC
Q psy9620 337 QERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVI----------NFDY----------PNNSEDYIHRIGRTGRSDN 396 (453)
Q Consensus 337 ~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI----------~~d~----------p~s~~~y~qr~GRagR~g~ 396 (453)
.++ ..|+++..+++|||+++++|+|+ ++++|| ++|. |.|.++|+||+||+||.++
T Consensus 215 ~~~----~~~~~~~~~~lvaT~~~~~G~~~-~~~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GR~GR~~~ 289 (305)
T d2bmfa2 215 SEY----IKTRTNDWDFVVTTDISEMGANF-KAERVIDPRRCMKPVILTDGEERVILAGPMPVTHSSAAQRRGRVGRNPK 289 (305)
T ss_dssp HHG----GGGGTSCCSEEEECGGGGTTCCC-CCSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCSSS
T ss_pred HHH----hhhhccchhhhhhhHHHHhcCCC-CccEEEEcCCceeeeEecCCCCceEEeccccCCHHHHhhhhcCcCcCCC
Confidence 544 46789999999999999999999 455554 3443 5688999999999999998
Q ss_pred cceEEEEEcCC
Q psy9620 397 TGTSYTFFTQQ 407 (453)
Q Consensus 397 ~g~~~~~~~~~ 407 (453)
.+...+++..+
T Consensus 290 ~~~~~~~~~~~ 300 (305)
T d2bmfa2 290 NENDQYIYMGE 300 (305)
T ss_dssp CCCEEEEECSC
T ss_pred CceEEEEECCC
Confidence 88877776654
|
| >d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=2.4e-28 Score=216.49 Aligned_cols=149 Identities=30% Similarity=0.480 Sum_probs=132.3
Q ss_pred cCCCccccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCC
Q psy9620 107 NAPNPITEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDG 186 (453)
Q Consensus 107 ~~p~p~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~ 186 (453)
+.|.++.+|++++|++.++++|+++||.+|||+|+++||.+++|+|++++||||||||++|++|+++++... ..+
T Consensus 4 ~~~~~~~sF~~l~l~~~l~~~L~~~g~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~a~~lp~i~~l~~~-----~~~ 78 (212)
T d1qdea_ 4 NYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS-----VKA 78 (212)
T ss_dssp SCCCCCCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTT-----CCS
T ss_pred CCcccccChhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEeecccccchhhhhHhhhHhhhhcc-----CCC
Confidence 468899999999999999999999999999999999999999999999999999999999999999988543 358
Q ss_pred cEEEEEcCCHHHHHHHHHHHHHhcCCCCceEEEEeCCccCCCC-------------------------------------
Q psy9620 187 PIVLVLAPTRELAQQIQEVARDFGSSTYLRSTCVYGGASKGPQ------------------------------------- 229 (453)
Q Consensus 187 ~~vlil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~------------------------------------- 229 (453)
|.+||++||++|+.|+...+..+.....+++..+.++.....+
T Consensus 79 ~~~lil~pt~el~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvI~TP~~l~~~~~~~~~~l~~l~~lVlD 158 (212)
T d1qdea_ 79 PQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILD 158 (212)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------CTTCSEEEECHHHHHHHHHTTSSCCTTCCEEEEE
T ss_pred cceEEEcccHHHhhhhhhhhcccccccccceeeEeeccchhHHHHHhcCCcEEEECCCccccccccCceecCcceEEeeh
Confidence 8999999999999999999999988888888888777554433
Q ss_pred ----------------------CCceEEEEeccCcHHHHHHHHHhhccceEEE
Q psy9620 230 ----------------------PDRQVLMWSATWPREVQKLAEDFLDSYIQIN 260 (453)
Q Consensus 230 ----------------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~ 260 (453)
..+|+++||||+++++.++++.++.+|+.+.
T Consensus 159 Ead~lld~~f~~~v~~I~~~~~~~~Q~vl~SAT~~~~v~~l~~~~l~~Pv~i~ 211 (212)
T d1qdea_ 159 EADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRIL 211 (212)
T ss_dssp THHHHHHTTCHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHHHHCSSCEEEC
T ss_pred hhhhhcccchHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHHCCCCEEEe
Confidence 6799999999999999999999999998764
|
| >d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase VlgB species: Flatworm (Dugesia japonica) [TaxId: 6161]
Probab=99.96 E-value=3.4e-29 Score=226.16 Aligned_cols=155 Identities=43% Similarity=0.659 Sum_probs=137.9
Q ss_pred CCCccccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCC----CCC
Q psy9620 108 APNPITEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQ----LKP 183 (453)
Q Consensus 108 ~p~p~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~----~~~ 183 (453)
.|.++.+|++++|++.++++|.++||..|||+|+++||.+++|+|++++||||||||++|++|+++++..... ...
T Consensus 16 ~~~~~~~F~~l~l~~~l~~~L~~~g~~~pt~iQ~~~ip~il~g~dvvi~a~TGsGKTlayllp~l~~l~~~~~~~~~~~~ 95 (238)
T d1wrba1 16 ATNVIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSK 95 (238)
T ss_dssp CCSCCCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------C
T ss_pred CCCccCCHHHCCCCHHHHHHHHHCCCCCCCHHHHHHhhhhhCCCCEEEECCCCCCcceeeHHHHHHHHHhcccccccccC
Confidence 5778999999999999999999999999999999999999999999999999999999999999999865421 223
Q ss_pred CCCcEEEEEcCCHHHHHHHHHHHHHhcCCCCceEEEEeCCccCCCC----------------------------------
Q psy9620 184 GDGPIVLVLAPTRELAQQIQEVARDFGSSTYLRSTCVYGGASKGPQ---------------------------------- 229 (453)
Q Consensus 184 ~~~~~vlil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~---------------------------------- 229 (453)
..+|++|||+||+|||.|+.+.+..++...++++..++|+.....+
T Consensus 96 ~~~~~alil~pt~el~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivV~TP~~l~~~~~~~~~~l~~v~~ 175 (238)
T d1wrba1 96 TAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKY 175 (238)
T ss_dssp CBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTSBCCTTCCE
T ss_pred CCCceEEEeccchhhhcchheeeeecccCCCcEEEEEeccchhhHHHhhcccCCceeecCHHHHHhHHccCceeccccce
Confidence 4578999999999999999999999999999999999887654322
Q ss_pred ------------------------------CCceEEEEeccCcHHHHHHHHHhhccceEEEec
Q psy9620 230 ------------------------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIG 262 (453)
Q Consensus 230 ------------------------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~ 262 (453)
.++|++++|||++.+++++++.++.+|+.+.++
T Consensus 176 lViDEaD~ll~~~f~~~i~~Il~~~~~~~~~~~Q~il~SAT~~~~v~~l~~~~~~~p~~i~vg 238 (238)
T d1wrba1 176 IVLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVG 238 (238)
T ss_dssp EEEETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEEC
T ss_pred eeeehhhhhhhhccHHHHHHHHHHhcCCCCCCCEEEEEeeeCCHHHHHHHHHHCCCCEEEEeC
Confidence 357999999999999999999999999888763
|
| >d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=2.6e-28 Score=215.80 Aligned_cols=144 Identities=26% Similarity=0.461 Sum_probs=127.1
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEE
Q psy9620 113 TEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVL 192 (453)
Q Consensus 113 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil 192 (453)
+.|++++|++.++++++++||.+|||+|+++||.+++|+|++++||||||||++|++|+++.+... ..+++++|+
T Consensus 1 s~F~dl~L~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvl~~A~TGsGKTla~~lp~l~~~~~~-----~~~~~~lil 75 (207)
T d1t6na_ 1 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV-----TGQVSVLVM 75 (207)
T ss_dssp CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCC-----TTCCCEEEE
T ss_pred CCccccCcCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCeEEEeccccccccccccceeeeeccc-----CCCceEEEE
Confidence 369999999999999999999999999999999999999999999999999999999999886543 257889999
Q ss_pred cCCHHHHHHHHHHHHHhcCCC-CceEEEEeCCccCCCC------------------------------------------
Q psy9620 193 APTRELAQQIQEVARDFGSST-YLRSTCVYGGASKGPQ------------------------------------------ 229 (453)
Q Consensus 193 ~Ptr~La~q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~------------------------------------------ 229 (453)
+||+|||.|+.+.+..++... .+++.+++|+.....+
T Consensus 76 ~PtreL~~qi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~ilI~TP~rl~~~~~~~~~~l~~l~~lVlDEaD 155 (207)
T d1t6na_ 76 CHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECD 155 (207)
T ss_dssp CSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHH
T ss_pred eccchhhHHHHHHHHHHHhhCCCceeEEEeccccHHHHHHHHHhcCCCEEEeCcchhhhhccCCceeccccceeehhhhh
Confidence 999999999999999998765 4567777777543321
Q ss_pred --------------------CCceEEEEeccCcHHHHHHHHHhhccceEEEe
Q psy9620 230 --------------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINI 261 (453)
Q Consensus 230 --------------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~ 261 (453)
.++|++++|||++++++++++.++++|+.+.+
T Consensus 156 ~ll~~~~~~~~i~~I~~~~~~~~Q~il~SAT~~~~v~~l~~~~l~~P~~I~V 207 (207)
T d1t6na_ 156 KMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFV 207 (207)
T ss_dssp HHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHTTCSSCEEEEC
T ss_pred hhhhcCCcHHHHHHHHHhCCCCCEEEEEeeeCCHHHHHHHHHHCCCCEEEeC
Confidence 67999999999999999999999999987653
|
| >d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEAD box RNA helicase rck/p54 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=1.1e-27 Score=211.64 Aligned_cols=142 Identities=30% Similarity=0.558 Sum_probs=124.0
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEE
Q psy9620 113 TEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVL 192 (453)
Q Consensus 113 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil 192 (453)
.+|++++|++.++++|.++||..|||+|+++||.+++|+|++++||||||||++|++|++.++.... .++.+||+
T Consensus 3 ~~F~~l~L~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKTlayllP~l~~~~~~~-----~~~~~lil 77 (206)
T d1veca_ 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKK-----DNIQAMVI 77 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTTS-----CSCCEEEE
T ss_pred CChhccCcCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEeeccCccccccccccchhhcccccc-----cCcceEEE
Confidence 5899999999999999999999999999999999999999999999999999999999999876543 57889999
Q ss_pred cCCHHHHHHHHHHHHHhcCCC-CceEEEEeCCccCCCC------------------------------------------
Q psy9620 193 APTRELAQQIQEVARDFGSST-YLRSTCVYGGASKGPQ------------------------------------------ 229 (453)
Q Consensus 193 ~Ptr~La~q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~------------------------------------------ 229 (453)
+||++||.|+++.+..+.... .+.+....|+.....+
T Consensus 78 ~pt~el~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~ivv~TPgrl~~~~~~~~~~~~~l~~lVlDEaD~ 157 (206)
T d1veca_ 78 VPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADK 157 (206)
T ss_dssp CSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHH
T ss_pred eecchhhHHHHHHHHHHhhcccCcccccccCCccHHHHHHHHHhccCeEEeCCccccccccchhccccccceEEEecccc
Confidence 999999999999999886543 3555666555432211
Q ss_pred ------------------CCceEEEEeccCcHHHHHHHHHhhccceEE
Q psy9620 230 ------------------PDRQVLMWSATWPREVQKLAEDFLDSYIQI 259 (453)
Q Consensus 230 ------------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~ 259 (453)
.++|+++||||++.++.++++.++.+|+.+
T Consensus 158 ll~~~f~~~i~~I~~~~~~~~Q~~l~SAT~~~~v~~l~~~~l~~P~~I 205 (206)
T d1veca_ 158 LLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp HTSTTTHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred ccccchHHHHHHHHHhCCCCCEEEEEEecCCHHHHHHHHHHCCCCEEE
Confidence 678999999999999999999999999765
|
| >d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Thermus thermophilus [TaxId: 274]
Probab=99.95 E-value=5.5e-27 Score=197.30 Aligned_cols=110 Identities=22% Similarity=0.384 Sum_probs=101.0
Q ss_pred CCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEEEcCCC
Q psy9620 299 DENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVINFDYP 378 (453)
Q Consensus 299 ~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p 378 (453)
...++||||+|++.|+.++..|...|+.+..+||+|++.+|.+++++|++|+.+|||||+++++|||+|+|++||+||+|
T Consensus 30 ~g~r~lvfc~t~~~~~~l~~~L~~~Gi~a~~~Hg~~~~~eR~~~l~~F~~G~~~vLVaT~v~~~GiDip~V~~Vi~~~~~ 109 (174)
T d1c4oa2 30 RGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDAD 109 (174)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTT
T ss_pred cCCcEEEEEcchhHHHHHHHHHHhcCCceEEEecccchHHHHHHHHHHHCCCeEEEEeeeeeeeeccCCCCcEEEEeccc
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred C-----ChhHHHHhhhcccCCCCcceEEEEEcCCCh
Q psy9620 379 N-----NSEDYIHRIGRTGRSDNTGTSYTFFTQQNS 409 (453)
Q Consensus 379 ~-----s~~~y~qr~GRagR~g~~g~~~~~~~~~~~ 409 (453)
. +.++|+||+||+||.+ +|.++++......
T Consensus 110 ~~~~~~~~~~~iq~~GR~gR~~-~g~~~~~~~~~~~ 144 (174)
T d1c4oa2 110 KEGFLRSERSLIQTIGRAARNA-RGEVWLYADRVSE 144 (174)
T ss_dssp SCSGGGSHHHHHHHHGGGTTST-TCEEEEECSSCCH
T ss_pred cccccchhHHHHHHhhhhhhcC-CCeeEEeecCCCH
Confidence 5 5588999999999986 4777777665443
|
| >d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Bacillus caldotenax [TaxId: 1395]
Probab=99.94 E-value=2e-26 Score=197.16 Aligned_cols=109 Identities=23% Similarity=0.428 Sum_probs=99.1
Q ss_pred CCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEEEcCCC
Q psy9620 299 DENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVINFDYP 378 (453)
Q Consensus 299 ~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p 378 (453)
...++||||+++..++.++..|...++.+..+||+|++.+|..++++|++|+++|||||+++++|||+|+|++|||||+|
T Consensus 30 ~~~~~iif~~~~~~~~~~~~~l~~~g~~~~~~hg~~~~~eR~~~l~~Fr~g~~~vLVaTdv~~rGiDip~v~~VI~~d~p 109 (181)
T d1t5la2 30 RNERTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDAD 109 (181)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHHTSCSEEEESCCCSSSCCCTTEEEEEETTTT
T ss_pred cCCeEEEEeehhhhhHHHHHHHHhCCcceeEecCCccHHHHHHHHHHHHCCCCCEEEehhHHHccCCCCCCCEEEEecCC
Confidence 35699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C-----ChhHHHHhhhcccCCCCcceEEEEEcCCC
Q psy9620 379 N-----NSEDYIHRIGRTGRSDNTGTSYTFFTQQN 408 (453)
Q Consensus 379 ~-----s~~~y~qr~GRagR~g~~g~~~~~~~~~~ 408 (453)
. +..+|+||+|||||.|. +.+++++....
T Consensus 110 ~~~~~~s~~~yi~R~GRagR~g~-~~~~~~~~~~~ 143 (181)
T d1t5la2 110 KEGFLRSERSLIQTIGRAARNAN-GHVIMYADTIT 143 (181)
T ss_dssp SCSGGGSHHHHHHHHGGGTTSTT-CEEEEECSSCC
T ss_pred cccccccHHHHHHHHHhhccccC-ceeEeecchhh
Confidence 5 68999999999999874 44444444443
|
| >d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.93 E-value=4.3e-26 Score=201.75 Aligned_cols=144 Identities=35% Similarity=0.649 Sum_probs=128.9
Q ss_pred cccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCC-cEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEE
Q psy9620 112 ITEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGS-NMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVL 190 (453)
Q Consensus 112 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~-d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vl 190 (453)
..+|++++|++.+++++.++||..|+|+|+++||.+++|+ |+++++|||+|||++|++|++..... ..++++|
T Consensus 3 ~msf~~l~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~g~~d~iv~a~TGsGKT~~~~l~~~~~~~~------~~~~~~l 76 (208)
T d1hv8a1 3 YMNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNE------NNGIEAI 76 (208)
T ss_dssp CCCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCS------SSSCCEE
T ss_pred ccCHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeeeechhcccccceeeccccccccc------ccCcceE
Confidence 4689999999999999999999999999999999999875 99999999999999999999987543 3688999
Q ss_pred EEcCCHHHHHHHHHHHHHhcCCCCceEEEEeCCccCCCC-----------------------------------------
Q psy9620 191 VLAPTRELAQQIQEVARDFGSSTYLRSTCVYGGASKGPQ----------------------------------------- 229 (453)
Q Consensus 191 il~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~----------------------------------------- 229 (453)
|++||++||.|+.+.+..+......++.+.+|+.....+
T Consensus 77 il~pt~~l~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~l~~~~IlV~TP~~l~~~l~~~~~~~~~l~~lViDEad~ 156 (208)
T d1hv8a1 77 ILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALKNANIVVGTPGRILDHINRGTLNLKNVKYFILDEADE 156 (208)
T ss_dssp EECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHHTCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHH
T ss_pred EEeeccccchhhhhhhhhhcccCCeEEEEeeCCCChHHHHHhcCCCCEEEEChHHHHHHHHcCCCCcccCcEEEEEChHH
Confidence 999999999999999999999889999988887643221
Q ss_pred ------------------CCceEEEEeccCcHHHHHHHHHhhccceEEEe
Q psy9620 230 ------------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINI 261 (453)
Q Consensus 230 ------------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~ 261 (453)
.++|++++|||+|+++.++++.++.++..+.+
T Consensus 157 l~~~~~~~~i~~I~~~~~~~~Q~i~~SAT~~~~v~~~~~~~l~~~~~I~~ 206 (208)
T d1hv8a1 157 MLNMGFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKA 206 (208)
T ss_dssp HHTTTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEEC
T ss_pred hhcCCChHHHHHHHHhCCCCCeEEEEEccCCHHHHHHHHHHCCCCeEEEE
Confidence 57999999999999999999999999877654
|
| >d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.93 E-value=1.9e-25 Score=197.40 Aligned_cols=144 Identities=29% Similarity=0.548 Sum_probs=130.9
Q ss_pred cccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEc
Q psy9620 114 EFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLA 193 (453)
Q Consensus 114 ~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~ 193 (453)
+|++++|++.++++|+++||..|||+|+++||.+++|+|+++.||||||||++|++|+++++.... .++.+++++
T Consensus 2 sF~~l~L~~~l~~~L~~~g~~~pt~iQ~~aip~il~g~dvi~~a~tGsGKTlay~lp~i~~~~~~~-----~~~~~~~~~ 76 (206)
T d1s2ma1 2 TFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKL-----NKIQALIMV 76 (206)
T ss_dssp CGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTTS-----CSCCEEEEC
T ss_pred ChHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEecCCcchhhhhhcccccccccccc-----ccccceeec
Confidence 799999999999999999999999999999999999999999999999999999999999876543 467799999
Q ss_pred CCHHHHHHHHHHHHHhcCCCCceEEEEeCCccCCCC--------------------------------------------
Q psy9620 194 PTRELAQQIQEVARDFGSSTYLRSTCVYGGASKGPQ-------------------------------------------- 229 (453)
Q Consensus 194 Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~-------------------------------------------- 229 (453)
|+++++.|....+..+....++++...+|+.....+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~~~~~l~~l~~lV~DEaD~l~ 156 (206)
T d1s2ma1 77 PTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKML 156 (206)
T ss_dssp SSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHHHHS
T ss_pred cchhhhhhhhhhhhhcccccCeeEEeecCccchhhHHHHhcccceEEEECCcccccccccceeecccceEEEeechhhhh
Confidence 999999999999999999999999999988643221
Q ss_pred ----------------CCceEEEEeccCcHHHHHHHHHhhccceEEEec
Q psy9620 230 ----------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIG 262 (453)
Q Consensus 230 ----------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~ 262 (453)
..+|+++||||+|+++.++++.++.+|+.+.+.
T Consensus 157 ~~~f~~~v~~I~~~l~~~~Q~il~SATl~~~v~~~~~~~l~~P~~I~~~ 205 (206)
T d1s2ma1 157 SRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLM 205 (206)
T ss_dssp SHHHHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCC
T ss_pred hhhhHHHHHHHHHhCCCCCEEEEEEEeCCHHHHHHHHHHCCCCEEEEee
Confidence 578999999999999999999999999877653
|
| >d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable DEAD box RNA helicase YqfR species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.90 E-value=6.1e-24 Score=188.41 Aligned_cols=144 Identities=32% Similarity=0.546 Sum_probs=121.1
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEE
Q psy9620 113 TEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVL 192 (453)
Q Consensus 113 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil 192 (453)
++|++++|++.++++|+++||.+|||+|+++||.+++|+|++++||||||||++|++|+++.+.... ..+.++++
T Consensus 1 t~F~~l~L~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~dvii~a~TGSGKTlayllp~l~~~~~~~-----~~~~~~~~ 75 (209)
T d1q0ua_ 1 TQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPER-----AEVQAVIT 75 (209)
T ss_dssp CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTS-----CSCCEEEE
T ss_pred CccccCCcCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCeEeecccccccceeeeeeecccccccc-----cccccccc
Confidence 4799999999999999999999999999999999999999999999999999999999998876543 46679999
Q ss_pred cCCHHHHHHHHHHHHHhcCCC----CceEEEEeCCccCCCC---------------------------------------
Q psy9620 193 APTRELAQQIQEVARDFGSST----YLRSTCVYGGASKGPQ--------------------------------------- 229 (453)
Q Consensus 193 ~Ptr~La~q~~~~~~~~~~~~----~~~~~~~~gg~~~~~~--------------------------------------- 229 (453)
+|+++++.+....+....... ...+.++.++.....+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~TP~~l~~~~~~~~~~~~~l~~lViDE 155 (209)
T d1q0ua_ 76 APTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDE 155 (209)
T ss_dssp CSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECS
T ss_pred ccccchhHHHHHHHHhhhccccccccccccccccchhhHHHHHHhccCceEEEecCchhhhhhhhhccccccceEEEEee
Confidence 999999999988887654332 3344444444322111
Q ss_pred ---------------------CCceEEEEeccCcHHHHHHHHHhhccceEEEe
Q psy9620 230 ---------------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINI 261 (453)
Q Consensus 230 ---------------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~ 261 (453)
.++|++++|||+|+++.++++.++++|+.+.+
T Consensus 156 ad~ll~~~f~~~v~~I~~~~~~~~Q~il~SATl~~~v~~l~~~~l~~p~~i~V 208 (209)
T d1q0ua_ 156 ADLMLDMGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPTFVHV 208 (209)
T ss_dssp HHHHHHTTCHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHHCSSCEEEEC
T ss_pred cccccccccHHHHHHHHHHCCCCCEEEEEEccCCHHHHHHHHHHCCCCEEEEe
Confidence 68999999999999999999999999987764
|
| >d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=99.90 E-value=7.9e-25 Score=178.58 Aligned_cols=100 Identities=26% Similarity=0.437 Sum_probs=91.3
Q ss_pred CCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEEEcC--
Q psy9620 299 DENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVINFD-- 376 (453)
Q Consensus 299 ~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d-- 376 (453)
..+++||||+|++.|+.|++.|...++.+..+|++|++. .|++++.+|||||+++++||| |++++|||+|
T Consensus 34 ~~~k~IVFc~t~~~ae~la~~L~~~G~~~~~~H~~~~~~-------~~~~~~~~vlvaTd~~~~GiD-~~v~~Vi~~~~~ 105 (138)
T d1jr6a_ 34 KGGRHLIFCHSKKKCDELAAKLVALGINAVAYYRGLDVS-------VIPTNGDVVVVATDALMTGFT-GDFDSVIDCNTS 105 (138)
T ss_dssp TTSCEEEECSCHHHHHHHHHHHHHHTCEEEEECTTCCSC-------CCTTSSCEEEEESSSSCSSSC-CCBSEEEECSEE
T ss_pred CCCCEEEEeCcHHHHHHHHHHHhccccchhhhhccchhh-------hhhhhhcceeehhHHHHhccc-cccceEEEEEec
Confidence 466999999999999999999999999999999999854 478999999999999999999 9999999855
Q ss_pred --CCCChhHHHHhhhcccCCCCcceEEEEEcCCC
Q psy9620 377 --YPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQN 408 (453)
Q Consensus 377 --~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~ 408 (453)
+|.++++|+||+||||| |++|. ++|+++.+
T Consensus 106 ~~~P~~~~~y~qr~GR~gR-g~~G~-~~~i~~~e 137 (138)
T d1jr6a_ 106 DGKPQDAVSRTQRRGRTGR-GKPGI-YRFVAPGE 137 (138)
T ss_dssp TTEECCHHHHHHHHTTBCS-SSCEE-EEECCSSC
T ss_pred CCCCCCHHHHHhHhccccC-CCCcE-EEEEcCCC
Confidence 69999999999999999 89995 77887765
|
| >d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.86 E-value=2.4e-22 Score=175.66 Aligned_cols=124 Identities=19% Similarity=0.340 Sum_probs=104.3
Q ss_pred hhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhc------------------------------CCeEEEEcCCCC
Q psy9620 286 NKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNY------------------------------GWAAVGIHGDKS 335 (453)
Q Consensus 286 ~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~------------------------------~~~~~~~h~~~~ 335 (453)
..+.+++.++.. ++.++||||+|++.|+.++..|... ...+.++|++|+
T Consensus 27 ~~~~~l~~~~i~-~~~~~LVF~~sRk~~~~~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~GIa~hh~~l~ 105 (201)
T d2p6ra4 27 VKFEELVEECVA-ENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLL 105 (201)
T ss_dssp CCHHHHHHHHHH-TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSC
T ss_pred hhHHHHHHHHHH-cCCcEEEEeCCHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhhhhhhhHHHHHHHhccHHHHHHHhh
Confidence 344455555433 3579999999999999999888752 123789999999
Q ss_pred HHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEEE-------cCCCCChhHHHHhhhcccCCCC--cceEEEEEcC
Q psy9620 336 QQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVIN-------FDYPNNSEDYIHRIGRTGRSDN--TGTSYTFFTQ 406 (453)
Q Consensus 336 ~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~-------~d~p~s~~~y~qr~GRagR~g~--~g~~~~~~~~ 406 (453)
+.+|..+++.|++|.++|||||+++++|||+|++++||+ ++.|.+..+|+||+|||||.|. .|.+++++.+
T Consensus 106 ~~~r~~ie~~f~~g~i~vlvaT~~l~~Gin~p~~~vvi~~~~~~d~~~~~~~~~~~~q~~GRAGR~g~~~~G~~~l~~~~ 185 (201)
T d2p6ra4 106 NGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGK 185 (201)
T ss_dssp HHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEECCG
T ss_pred hhhHHHHHHHHhCCCceEEEechHHHhhcCCCCceEEEecceeccCCcCCCCHHHHHHHhcccCCCCCCCeeEEEEEeCC
Confidence 999999999999999999999999999999999999996 6778899999999999999874 6889888777
Q ss_pred CChH
Q psy9620 407 QNSR 410 (453)
Q Consensus 407 ~~~~ 410 (453)
.+..
T Consensus 186 ~~~~ 189 (201)
T d2p6ra4 186 RDRE 189 (201)
T ss_dssp GGHH
T ss_pred CChH
Confidence 6543
|
| >d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.86 E-value=5.2e-22 Score=184.47 Aligned_cols=128 Identities=30% Similarity=0.472 Sum_probs=111.4
Q ss_pred cchhhhHHHHHHhhh-cCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcC--------CCCHHHHHHHHHHHhcCCCc
Q psy9620 282 HEKENKLFGLLNDIS-SKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHG--------DKSQQERDYVLKEFRNGRAG 352 (453)
Q Consensus 282 ~~k~~~l~~ll~~~~-~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~--------~~~~~~r~~~~~~f~~g~~~ 352 (453)
+.|...+.++|..+. .....++||||+++..++.+++.|...++.+..+|| ++++.+|..+++.|++|+++
T Consensus 142 ~pK~~~l~~~l~~~~~~~~~~k~iiF~~~~~~~~~~~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~F~~g~~~ 221 (286)
T d1wp9a2 142 HPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFN 221 (286)
T ss_dssp CHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHHTSCS
T ss_pred CcHHHHHHHHHHHHHHhCCCCcEEEEeCcHHhHHHHHHHHHHcCCceEEeeccccccccchhchHHHHHHHHHHHcCCCc
Confidence 457777777776553 345679999999999999999999999999988876 46667899999999999999
Q ss_pred EEEEeccCccCCCCCCCcEEEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcCCChH
Q psy9620 353 ILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSR 410 (453)
Q Consensus 353 vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~ 410 (453)
|||||+++++|||+|++++||+||+|+|+..|+||+||+||. .+|.+++|+++...+
T Consensus 222 vLv~T~~~~~Gld~~~~~~Vi~~d~~~~~~~~~Qr~GR~gR~-~~~~~~~l~~~~~~e 278 (286)
T d1wp9a2 222 VLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRH-MPGRVIILMAKGTRD 278 (286)
T ss_dssp EEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSC-CCSEEEEEEETTSHH
T ss_pred EEEEccceeccccCCCCCEEEEeCCCCCHHHHHHHHHhCCCC-CCCEEEEEEeCCCHH
Confidence 999999999999999999999999999999999999999997 579999999887543
|
| >d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.83 E-value=1.1e-21 Score=170.26 Aligned_cols=154 Identities=19% Similarity=0.273 Sum_probs=114.3
Q ss_pred cchhhhHHHHHHhhhcCCCCcEEEEEcchhHHHH--------HHHHHHhc---CCeEEEEcCCCCHHHHHHHHHHHhcCC
Q psy9620 282 HEKENKLFGLLNDISSKDENKTIIFAETKRKVDK--------ITKSIQNY---GWAAVGIHGDKSQQERDYVLKEFRNGR 350 (453)
Q Consensus 282 ~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~--------l~~~L~~~---~~~~~~~h~~~~~~~r~~~~~~f~~g~ 350 (453)
.++.+.+.+.+..... ...++.|+||..++.+. ..+.|.+. ++.+..+||.|++++|+.++++|++|+
T Consensus 12 ~~~~~~v~~~I~~el~-~g~QvyvVcP~Ieese~~~~~~~~e~~~~l~~~~~p~~~v~~lHG~m~~~eke~~m~~F~~g~ 90 (206)
T d1gm5a4 12 MDRVNEVYEFVRQEVM-RGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGR 90 (206)
T ss_dssp SSTHHHHHHHHHHHTT-TSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTS
T ss_pred cccHHHHHHHHHHHHH-cCCCEEEEEeeecccccccchhhHHHHHHHHHhcCCCCeEEEEeecccHHHHHHHHHHHHCCC
Confidence 3455566666655433 35688888987655443 33333332 567888999999999999999999999
Q ss_pred CcEEEEeccCccCCCCCCCcEEEEcCCCC-ChhHHHHhhhcccCCCCcceEEEEEcCCChHHHHHHHHHHHhcCCCCChH
Q psy9620 351 AGILVATDVAARGLDVDDVKFVINFDYPN-NSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDLIDVLTESNHPVDPK 429 (453)
Q Consensus 351 ~~vLvaT~~~~~GiDip~v~~VI~~d~p~-s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~v~~~ 429 (453)
++|||||+++++|||+|++++||+++.|. ..+.+.|..||+||.+..|.|++++.+.+.... +-++.+...+.-..-.
T Consensus 91 ~~iLVaTtViE~GIDip~a~~iii~~a~~fglsqlhQlrGRvGR~~~~~~~~l~~~~~~~~~~-~rl~~~~~~~dGf~ia 169 (206)
T d1gm5a4 91 YDILVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGDVGEEAM-ERLRFFTLNTDGFKIA 169 (206)
T ss_dssp SSBCCCSSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCSCCHHHH-HHHHHHHTCCCSHHHH
T ss_pred EEEEEEehhhhccccccCCcEEEEEccCCccHHHHHhhhhheeeccccceeEeeeccccccch-hhhhhccccCCCchHH
Confidence 99999999999999999999999999997 688888999999999999999999987665444 4456666666555555
Q ss_pred HHHHHhhc
Q psy9620 430 LSALASRS 437 (453)
Q Consensus 430 l~~~~~~~ 437 (453)
..+|.-+.
T Consensus 170 ~~Dl~lRG 177 (206)
T d1gm5a4 170 EYDLKTRG 177 (206)
T ss_dssp HHHHHSSC
T ss_pred HHHHhccC
Confidence 55555443
|
| >d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.83 E-value=4.7e-23 Score=187.32 Aligned_cols=125 Identities=19% Similarity=0.311 Sum_probs=105.8
Q ss_pred EEccccchhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEE
Q psy9620 277 EVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVA 356 (453)
Q Consensus 277 ~~~~~~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLva 356 (453)
.+..+.++...|..+|+.+ +.++||||++++.|+.++.+|... +||++++.+|.+++++|++|+++||||
T Consensus 6 d~~~~~~~~~~l~~~l~~~----~~~~iif~~~~~~~~~l~~~l~~~------~hg~~~~~~R~~~~~~f~~g~~~vLVa 75 (248)
T d1gkub2 6 DVAVNDESISTLSSILEKL----GTGGIIYARTGEEAEEIYESLKNK------FRIGIVTATKKGDYEKFVEGEIDHLIG 75 (248)
T ss_dssp EEEESCCCTTTTHHHHTTS----CSCEEEEESSHHHHHHHHHTTTTS------SCEEECTTSSSHHHHHHHHTSCSEEEE
T ss_pred EEecCchHHHHHHHHHHHh----CCCEEEEECCHHHHHHHHHHHHHh------ccCCCCHHHHHHHHHHHHhCCCeEEEE
Confidence 3344667888888888753 468999999999999999999763 799999999999999999999999999
Q ss_pred e----ccCccCCCCCC-CcEEEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcCCChHHHHHH
Q psy9620 357 T----DVAARGLDVDD-VKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDL 415 (453)
Q Consensus 357 T----~~~~~GiDip~-v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l 415 (453)
| +++++|||+|+ |++|||||+|+ |.||+||+||.|..|.+++++...+......+
T Consensus 76 T~a~~~v~~rGlDip~~v~~VI~~d~P~----~~~r~gR~~R~g~~~~~~~~~~~~~~~~~~~l 135 (248)
T d1gkub2 76 TAHYYGTLVRGLDLPERIRFAVFVGCPS----FRVTIEDIDSLSPQMVKLLAYLYRNVDEIERL 135 (248)
T ss_dssp ECC------CCSCCTTTCCEEEEESCCE----EEEECSCGGGSCHHHHHHHHTTTSCHHHHHTT
T ss_pred eccccchhhhccCccccccEEEEeCCCc----chhhhhhhhccCcceEeeeeccHhhHHHHHHH
Confidence 9 78999999996 99999999994 88999999999999999999988776655443
|
| >d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=99.80 E-value=6.1e-19 Score=151.07 Aligned_cols=126 Identities=15% Similarity=0.267 Sum_probs=111.1
Q ss_pred CCCcEEEEEcchhHHHHHHHHHHhc--CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEEEcC
Q psy9620 299 DENKTIIFAETKRKVDKITKSIQNY--GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVINFD 376 (453)
Q Consensus 299 ~~~~~lVF~~s~~~~~~l~~~L~~~--~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d 376 (453)
..+++-++||..+..+.+++.|.+. ++.+..+||.|++.+++.++.+|++|+++|||||.+++.|||+|+++++|..+
T Consensus 30 rGgQvy~V~p~I~~~e~~~~~l~~~~p~~~i~~lHGkm~~~eke~im~~F~~g~~~ILv~TtvIEvGiDvpnA~~iiI~~ 109 (211)
T d2eyqa5 30 RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIER 109 (211)
T ss_dssp TTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEEEEETT
T ss_pred cCCeEEEEEcCccchhhHHHHHHHhCCceEEEEEEeccCHHHHHHHHHHHHcCCcceEEEehhhhhccCCCCCcEEEEec
Confidence 4779999999999999999999874 77899999999999999999999999999999999999999999999999999
Q ss_pred CCC-ChhHHHHhhhcccCCCCcceEEEEEcCCC--hHHHHHHHHHHHhcCC
Q psy9620 377 YPN-NSEDYIHRIGRTGRSDNTGTSYTFFTQQN--SRQAKDLIDVLTESNH 424 (453)
Q Consensus 377 ~p~-s~~~y~qr~GRagR~g~~g~~~~~~~~~~--~~~~~~l~~~l~~~~~ 424 (453)
... .++++.|..||+||.+..+.|++++...+ .....+-++.+++.+.
T Consensus 110 a~rfGLaQLhQLRGRVGR~~~~s~c~l~~~~~~~~~~~a~~RL~~l~~~~d 160 (211)
T d2eyqa5 110 ADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLED 160 (211)
T ss_dssp TTSSCHHHHHHHHTTCCBTTBCEEEEEEECCGGGSCHHHHHHHHHHTTCCS
T ss_pred chhccccccccccceeeecCccceEEEEecCCcCCCchHHHHHHHHHhccc
Confidence 875 79999999999999999999999987642 3445555566665554
|
| >d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=99.79 E-value=1.4e-20 Score=168.66 Aligned_cols=106 Identities=18% Similarity=0.234 Sum_probs=94.6
Q ss_pred CCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHH----------HHHHHHHhcCCCcEEEEeccCcc---CCCC
Q psy9620 300 ENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQER----------DYVLKEFRNGRAGILVATDVAAR---GLDV 366 (453)
Q Consensus 300 ~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r----------~~~~~~f~~g~~~vLvaT~~~~~---GiDi 366 (453)
.+++||||+|++.|+.|+..|.+.++.+..+|++++++.| ..+++.|+.|+.++||+|+++++ ++|+
T Consensus 36 ggk~LVFcnSR~~aE~La~~L~~~Gi~a~~~Hgglsq~~R~~~gd~~i~~~~aLe~f~~G~~dvVVaT~~~a~g~~giDi 115 (299)
T d1a1va2 36 GGRHLIFCHSKKKCDELAAKLVALGINAVAYYRGLDVSVIPTSGDVVVVATDALMTGFTGDFDSVIDCNTCVTQTVDFSL 115 (299)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCGGGSCSSSSEEEEECTTC---CCCCBSEEEECCEEEEEEEECCC
T ss_pred CCCEEEECCcHHHHHHHHHHHHHCCCCEEEEeCCchHHHHHhccchHHHHHHHHHHHhcCCCcEEEEEeehhccCCCCCC
Confidence 5699999999999999999999999999999999999887 46889999999999999999998 6788
Q ss_pred CCCcEEEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcC
Q psy9620 367 DDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQ 406 (453)
Q Consensus 367 p~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~ 406 (453)
+.+.+||++++|.|.++|+||+||+|| |++|...+++..
T Consensus 116 d~V~~VI~~d~P~SvesyIQRiGRTGR-Gr~G~~~~l~~~ 154 (299)
T d1a1va2 116 DPTFTIETTTLPQDAVSRTQRRGRTGR-GKPGIYRFVAPG 154 (299)
T ss_dssp SSSCEEEEEEEECBHHHHHHHHTTBCS-SSCEEEEESCSC
T ss_pred CcceEEEeCCCCCCHHHHHhhccccCC-CCCceEEEEecC
Confidence 888899999999999999999999999 899987766554
|
| >d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Probab=99.78 E-value=3.5e-19 Score=156.92 Aligned_cols=86 Identities=22% Similarity=0.356 Sum_probs=78.1
Q ss_pred cccccCCCHHHHHHHHHC-CCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEE
Q psy9620 114 EFAEANFPDYVLKEVKRQ-GFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVL 192 (453)
Q Consensus 114 ~f~~~~l~~~l~~~l~~~-g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil 192 (453)
..+.++|++.+.+.+++. ||..++|+|.++++++++|+|+++++|||||||++|++|++.. ..+++++
T Consensus 3 ~~e~~~l~~~~~~~l~~~fg~~~~rp~Q~~ai~~~l~g~~vlv~apTGsGKT~~~~~~~~~~-----------~~~~~~v 71 (206)
T d1oywa2 3 QAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL-----------NGLTVVV 71 (206)
T ss_dssp CCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS-----------SSEEEEE
T ss_pred chhhCCCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCCCcchhhhhhhhc-----------cCceEEe
Confidence 457788999999999887 9999999999999999999999999999999999999998752 4569999
Q ss_pred cCCHHHHHHHHHHHHHhc
Q psy9620 193 APTRELAQQIQEVARDFG 210 (453)
Q Consensus 193 ~Ptr~La~q~~~~~~~~~ 210 (453)
+|+++|+.|+.+.++.++
T Consensus 72 ~P~~~L~~q~~~~l~~~~ 89 (206)
T d1oywa2 72 SPLISLMKDQVDQLQANG 89 (206)
T ss_dssp CSCHHHHHHHHHHHHHTT
T ss_pred ccchhhhhhHHHHHHhhc
Confidence 999999999999998874
|
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.78 E-value=2.2e-19 Score=157.69 Aligned_cols=97 Identities=25% Similarity=0.307 Sum_probs=79.8
Q ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHH
Q psy9620 120 FPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELA 199 (453)
Q Consensus 120 l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La 199 (453)
++++++..|++.||.+|+|+|.++++.+++++|+++++|||||||++++++++..+.. .+++|+++|+++|+
T Consensus 10 ~~~~~~~~l~~~g~~~l~~~Q~~ai~~l~~~~~~il~apTGsGKT~~a~l~i~~~~~~--------~~~vl~l~P~~~L~ 81 (202)
T d2p6ra3 10 ISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK--------GGKSLYVVPLRALA 81 (202)
T ss_dssp HHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT--------TCCEEEEESSHHHH
T ss_pred hhHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCchhHHHHHHHHHHhhc--------cCcceeecccHHHH
Confidence 6788999999999999999999999999999999999999999999999999877653 34699999999999
Q ss_pred HHHHHHHHHhcCCCCceEEEEeCCcc
Q psy9620 200 QQIQEVARDFGSSTYLRSTCVYGGAS 225 (453)
Q Consensus 200 ~q~~~~~~~~~~~~~~~~~~~~gg~~ 225 (453)
.|+.+.++++.... .++....++..
T Consensus 82 ~q~~~~~~~~~~~~-~~v~~~~~~~~ 106 (202)
T d2p6ra3 82 GEKYESFKKWEKIG-LRIGISTGDYE 106 (202)
T ss_dssp HHHHHHHTTTTTTT-CCEEEECSSCB
T ss_pred HHHHHHHHHHhhcc-ccceeeccCcc
Confidence 99999998876433 44545554433
|
| >d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.75 E-value=2.7e-19 Score=156.77 Aligned_cols=116 Identities=28% Similarity=0.468 Sum_probs=98.8
Q ss_pred chhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCcc
Q psy9620 283 EKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAAR 362 (453)
Q Consensus 283 ~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~ 362 (453)
.|...|.+++.. ....++||||++...++.|++.|. +..+||.++..+|..++++|++|+.+|||||+++++
T Consensus 79 ~K~~~l~~ll~~---~~~~k~lvf~~~~~~~~~l~~~l~-----~~~i~g~~~~~~R~~~l~~F~~~~~~vLv~~~~~~~ 150 (200)
T d2fwra1 79 NKIRKLREILER---HRKDKIIIFTRHNELVYRISKVFL-----IPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDE 150 (200)
T ss_dssp HHHHHHHHHHHH---TSSSCBCCBCSCHHHHHHHHHHTT-----CCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCS
T ss_pred HHHHHHHHHHHh---CCCCcEEEEeCcHHHHHHHHhhcC-----cceeeCCCCHHHHHHHHHHhhcCCeeeeeecchhhc
Confidence 456666666665 345799999999999999988773 445899999999999999999999999999999999
Q ss_pred CCCCCCCcEEEEcCCCCChhHHHHhhhcccCCCCcc---eEEEEEcC
Q psy9620 363 GLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTG---TSYTFFTQ 406 (453)
Q Consensus 363 GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g---~~~~~~~~ 406 (453)
|||+|.+++||++++|+|...|+||+||++|.++.. ..+.|+.+
T Consensus 151 Gidl~~~~~vi~~~~~~s~~~~~Q~iGR~~R~~~~k~~~~i~~~v~~ 197 (200)
T d2fwra1 151 GIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISR 197 (200)
T ss_dssp SSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEEC
T ss_pred ccCCCCCCEEEEeCCCCCHHHHHHHHHhcCCCCCCCcEEEEEEEecC
Confidence 999999999999999999999999999999997643 34444443
|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.74 E-value=9.3e-19 Score=157.65 Aligned_cols=84 Identities=23% Similarity=0.214 Sum_probs=72.6
Q ss_pred HHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHH
Q psy9620 126 KEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEV 205 (453)
Q Consensus 126 ~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~ 205 (453)
+.+-+.++.+|+++|+++++.++.|+|++++||||+|||++++++++..... +.++|||+||++|+.|++++
T Consensus 34 ~~~~~~~~~~p~~~Q~~~i~~~l~g~~~~i~apTGsGKT~~~~~~~~~~~~~--------~~rvliv~Pt~~La~Q~~~~ 105 (237)
T d1gkub1 34 VEFFRKCVGEPRAIQKMWAKRILRKESFAATAPTGVGKTSFGLAMSLFLALK--------GKRCYVIFPTSLLVIQAAET 105 (237)
T ss_dssp HHHHHTTTCSCCHHHHHHHHHHHTTCCEECCCCBTSCSHHHHHHHHHHHHTT--------SCCEEEEESCHHHHHHHHHH
T ss_pred HHHHHhccCCCCHHHHHHHHHHHCCCCEEEEecCCChHHHHHHHHHHHHHHh--------cCeEEEEeccHHHHHHHHHH
Confidence 4445667889999999999999999999999999999999999998876543 45799999999999999999
Q ss_pred HHHhcCCCCceE
Q psy9620 206 ARDFGSSTYLRS 217 (453)
Q Consensus 206 ~~~~~~~~~~~~ 217 (453)
+++++...++.+
T Consensus 106 l~~~~~~~~~~~ 117 (237)
T d1gkub1 106 IRKYAEKAGVGT 117 (237)
T ss_dssp HHHHHTTTCCSG
T ss_pred HHHHHHHcCCce
Confidence 999877665543
|
| >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.56 E-value=5.8e-15 Score=128.78 Aligned_cols=84 Identities=30% Similarity=0.258 Sum_probs=70.4
Q ss_pred CCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhcCCC
Q psy9620 134 DRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGSST 213 (453)
Q Consensus 134 ~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~~~~ 213 (453)
-+|+++|.+++..+. ++|+|+++|||+|||+++++++...+.. .+.++||++|+++|+.|+.+.+.++....
T Consensus 8 ~~pr~~Q~~~~~~~~-~~n~lv~~pTGsGKT~i~~~~~~~~~~~-------~~~~il~i~P~~~L~~q~~~~~~~~~~~~ 79 (200)
T d1wp9a1 8 IQPRIYQEVIYAKCK-ETNCLIVLPTGLGKTLIAMMIAEYRLTK-------YGGKVLMLAPTKPLVLQHAESFRRLFNLP 79 (200)
T ss_dssp HCCCHHHHHHHHHGG-GSCEEEECCTTSCHHHHHHHHHHHHHHH-------SCSCEEEECSSHHHHHHHHHHHHHHBCSC
T ss_pred CCCCHHHHHHHHHHh-cCCeEEEeCCCCcHHHHHHHHHHHHHHh-------cCCcEEEEcCchHHHHHHHHHHHHhhccc
Confidence 389999999998876 5689999999999999998888766554 24469999999999999999999998877
Q ss_pred CceEEEEeCCcc
Q psy9620 214 YLRSTCVYGGAS 225 (453)
Q Consensus 214 ~~~~~~~~gg~~ 225 (453)
+.++....++..
T Consensus 80 ~~~v~~~~~~~~ 91 (200)
T d1wp9a1 80 PEKIVALTGEKS 91 (200)
T ss_dssp GGGEEEECSCSC
T ss_pred ccceeeeecccc
Confidence 788777666543
|
| >d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Rad54-like, Rad54L species: Zebra fish (Danio rerio) [TaxId: 7955]
Probab=99.53 E-value=6.9e-14 Score=131.35 Aligned_cols=126 Identities=17% Similarity=0.257 Sum_probs=109.8
Q ss_pred cchhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCc---EEEEec
Q psy9620 282 HEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAG---ILVATD 358 (453)
Q Consensus 282 ~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~---vLvaT~ 358 (453)
..|...|..++..+......|+|||++.....+.+...|...++.+..+||.++..+|..+++.|+++... +|++|.
T Consensus 100 S~Kl~~L~~ll~~~~~~~g~KvlIFs~~~~~ld~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~vlLls~~ 179 (346)
T d1z3ix1 100 SGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSK 179 (346)
T ss_dssp SHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGG
T ss_pred CHHHHHHHHHHHHHHHhcCCceeEEeehhhhhHHHHHHHhhhhccccccccchhHHHHHHHHHhhhcccccceeeeecch
Confidence 45777777888776555677999999999999999999999999999999999999999999999987543 678889
Q ss_pred cCccCCCCCCCcEEEEcCCCCChhHHHHhhhcccCCCCcceE--EEEEcCC
Q psy9620 359 VAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTS--YTFFTQQ 407 (453)
Q Consensus 359 ~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~--~~~~~~~ 407 (453)
+.+.|||+..+++||+||+++++..+.|++||+-|.|+...+ +-|+...
T Consensus 180 agg~GlnL~~a~~vi~~d~~wnp~~~~Qa~~R~~R~GQ~~~V~v~rli~~~ 230 (346)
T d1z3ix1 180 AGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTG 230 (346)
T ss_dssp GSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETT
T ss_pred hhhhccccccceEEEEecCCCccchHhHhhhcccccCCCCceEEEEEEeCC
Confidence 999999999999999999999999999999999999876544 4455554
|
| >d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=99.52 E-value=1.9e-14 Score=131.44 Aligned_cols=101 Identities=20% Similarity=0.327 Sum_probs=81.6
Q ss_pred CCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEEEcCC--
Q psy9620 300 ENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVINFDY-- 377 (453)
Q Consensus 300 ~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~-- 377 (453)
.+++||||++..+++.++..|...+..|..+|+.+...++. +|++++.+|||||+++++|||+ +|.+||+.++
T Consensus 36 ~g~~~~F~~s~~~~~~~a~~L~~~g~~V~~l~~~~~~~e~~----~~~~~~~~~~~~t~~~~~~~~~-~~~~vid~g~~~ 110 (299)
T d1yksa2 36 KRPTAWFLPSIRAANVMAASLRKAGKSVVVLNRKTFEREYP----TIKQKKPDFILATDIAEMGANL-CVERVLDCRTAF 110 (299)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTTCCEEECCSSSCC------------CCCSEEEESSSTTCCTTC-CCSEEEECCEEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhcCCeEEEEcCcCcHhHHh----hhhcCCcCEEEEechhhhceec-CceEEEecCcee
Confidence 67999999999999999999999999999999999987754 5788999999999999999999 6999996553
Q ss_pred -----------------CCChhHHHHhhhcccCCCCcceEEEEEc
Q psy9620 378 -----------------PNNSEDYIHRIGRTGRSDNTGTSYTFFT 405 (453)
Q Consensus 378 -----------------p~s~~~y~qr~GRagR~g~~g~~~~~~~ 405 (453)
|.|.++..||.||+||.+....++.++.
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~qr~gr~gr~~~~~~~~~~y~ 155 (299)
T d1yksa2 111 KPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYYYS 155 (299)
T ss_dssp EEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEEC
T ss_pred ceeeecCCCCeeEEeeeecCHHHHHHhcccccccCCCceEEEEeC
Confidence 2467888999999999855445555655
|
| >d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Helicase of the SNF2/Rad54 hamily species: Sulfolobus solfataricus [TaxId: 2287]
Probab=99.48 E-value=1.2e-13 Score=123.98 Aligned_cols=126 Identities=18% Similarity=0.213 Sum_probs=93.8
Q ss_pred cchhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhc-CCeEEEEcCCCCHHHHHHHHHHHhcCC-CcEEEEe-c
Q psy9620 282 HEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNY-GWAAVGIHGDKSQQERDYVLKEFRNGR-AGILVAT-D 358 (453)
Q Consensus 282 ~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~-~~~~~~~h~~~~~~~r~~~~~~f~~g~-~~vLvaT-~ 358 (453)
..|...+.+++..+.. .+.++||||+.....+.+...|... +..+..+||+++..+|..++++|.++. ..|||+| .
T Consensus 68 S~K~~~l~~~l~~~~~-~g~kviIFs~~~~~~~~l~~~l~~~~~~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vll~~~~ 146 (244)
T d1z5za1 68 SGKMIRTMEIIEEALD-EGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVK 146 (244)
T ss_dssp CHHHHHHHHHHHHHHH-TTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECC
T ss_pred hhHHHHHHHHHHhhcc-cccceEEEeeceehHHHHHHHHHhhccceEEEEecccchhccchhhhhhhccccchhcccccc
Confidence 4577888888877644 4679999999999999999988754 888899999999999999999998764 6777555 7
Q ss_pred cCccCCCCCCCcEEEEcCCCCChhHHHHhhhcccCCCCcc--eEEEEEcCCC
Q psy9620 359 VAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTG--TSYTFFTQQN 408 (453)
Q Consensus 359 ~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g--~~~~~~~~~~ 408 (453)
+.+.|+|+..+++||++|+|+|+..+.|++||+-|.|+.. .++.|+....
T Consensus 147 ~~g~Glnl~~a~~vi~~~~~wn~~~~~Qa~~R~~R~Gq~~~v~i~~l~~~~T 198 (244)
T d1z5za1 147 AGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGT 198 (244)
T ss_dssp TTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETTS
T ss_pred ccccccccchhhhhhhcCchhhhHHHhhhcceeeecCCCCceEEEEEeeCCC
Confidence 8889999999999999999999999999999999998653 4455556553
|
| >d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Bacillus subtilis [TaxId: 1423]
Probab=99.41 E-value=2e-12 Score=106.60 Aligned_cols=129 Identities=17% Similarity=0.218 Sum_probs=104.1
Q ss_pred EEccccchhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEE
Q psy9620 277 EVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVA 356 (453)
Q Consensus 277 ~~~~~~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLva 356 (453)
.+....+|...+.+.+..+.. ...|+||++.|.+.++.++..|.+.+++...+++... +++..+-...-..-.|.||
T Consensus 12 vf~T~~eK~~AIi~eV~~~~~-~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLnAk~~--~~Ea~II~~Ag~~g~VtIA 88 (175)
T d1tf5a4 12 IYRTMEGKFKAVAEDVAQRYM-TGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNH--EREAQIIEEAGQKGAVTIA 88 (175)
T ss_dssp EESSHHHHHHHHHHHHHHHHH-HTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCH--HHHHHHHTTTTSTTCEEEE
T ss_pred EEcCHHHHHHHHHHHHHHHHh-cCCCEEEEeCcHHHHHHHHHHHHHcCCCceeehhhhH--HHHHHHHHhccCCCceeeh
Confidence 334556677777776665533 4679999999999999999999999999999998643 4444444444445579999
Q ss_pred eccCccCCCCC---CCc-----EEEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcCCC
Q psy9620 357 TDVAARGLDVD---DVK-----FVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQN 408 (453)
Q Consensus 357 T~~~~~GiDip---~v~-----~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~ 408 (453)
|+++.||.||. .|. |||....|.|.....|..||+||.|.+|.+.+|++-+|
T Consensus 89 TNmAGRGtDikl~~~v~~~GGLhVI~t~~~~s~Rid~Ql~GR~gRQGdpGs~~~~~sleD 148 (175)
T d1tf5a4 89 TNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMED 148 (175)
T ss_dssp ETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTS
T ss_pred hhHHHcCCCccchHHHHhCCCcEEEEeccCcchhHHHHHhcchhhhCCCcccEEEEEcCH
Confidence 99999999985 232 89999999999999999999999999999999997655
|
| >d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=99.35 E-value=6.4e-12 Score=110.06 Aligned_cols=99 Identities=25% Similarity=0.108 Sum_probs=80.5
Q ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhc----CC--cEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEc
Q psy9620 120 FPDYVLKEVKRQGFDRPTPIQAQGWPIAMS----GS--NMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLA 193 (453)
Q Consensus 120 l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~----g~--d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~ 193 (453)
.+..+.+.+.+.---.+|+-|.+++..+.+ .+ +.|++|.||||||.+|+.+++..+. .+..+++++
T Consensus 40 ~~~~~~~~~~~~lP~~lt~~Q~~~~~~i~~~~~~~~~~~~LL~GdvGsGKT~V~~~a~~~~~~--------~g~qv~~l~ 111 (233)
T d2eyqa3 40 HDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD--------NHKQVAVLV 111 (233)
T ss_dssp CCHHHHHHHHHTCCSCCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHT--------TTCEEEEEC
T ss_pred CCHHHHHhhhhccccccchhHHHHHHHHHHHHhccCccCeEEEcCCCCCcHHHHHHHHHHHHH--------cCCceEEEc
Confidence 345555555544223899999999988763 33 6899999999999999999988775 466799999
Q ss_pred CCHHHHHHHHHHHHHhcCCCCceEEEEeCCccC
Q psy9620 194 PTRELAQQIQEVARDFGSSTYLRSTCVYGGASK 226 (453)
Q Consensus 194 Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~ 226 (453)
||..|+.|.++.+++++...++++..+++..+.
T Consensus 112 Pt~~La~Q~~~~~~~~~~~~~~~v~~l~~~~~~ 144 (233)
T d2eyqa3 112 PTTLLAQQHYDNFRDRFANWPVRIEMISRFRSA 144 (233)
T ss_dssp SSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCH
T ss_pred cHHHhHHHHHHHHHHHHhhCCCEEEeccCcccc
Confidence 999999999999999998888999888887654
|
| >d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.34 E-value=4.4e-12 Score=113.26 Aligned_cols=96 Identities=20% Similarity=0.144 Sum_probs=80.3
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHhc----C--CcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCC
Q psy9620 122 DYVLKEVKRQGFDRPTPIQAQGWPIAMS----G--SNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPT 195 (453)
Q Consensus 122 ~~l~~~l~~~g~~~~~~~Q~~~i~~i~~----g--~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt 195 (453)
+.+.+.++.+.| ++|..|.+|+..+.. + -+.|++|.||||||.+|+..++..+.. +..|++++||
T Consensus 71 ~l~~~f~~~LPF-eLT~~Q~~ai~ei~~d~~~~~~m~rLL~GdvGSGKT~Va~~a~~~~~~~--------g~q~~~m~Pt 141 (264)
T d1gm5a3 71 KLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA--------GFQTAFMVPT 141 (264)
T ss_dssp HHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH--------TSCEEEECSC
T ss_pred HHHHHHHhhccc-cCCchHHHHHHHHHHHhhccCcceeeeeccccccccHHHHHHHHHHHhc--------ccceeEEeeh
Confidence 334445566677 899999999998763 3 367999999999999999999888765 4459999999
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEEEeCCccC
Q psy9620 196 RELAQQIQEVARDFGSSTYLRSTCVYGGASK 226 (453)
Q Consensus 196 r~La~q~~~~~~~~~~~~~~~~~~~~gg~~~ 226 (453)
..||.|.++.+++++...++++..++++.+.
T Consensus 142 ~~La~Qh~~~~~~~f~~~~~~v~~l~~~~~~ 172 (264)
T d1gm5a3 142 SILAIQHYRRTVESFSKFNIHVALLIGATTP 172 (264)
T ss_dssp HHHHHHHHHHHHHHHTCSSCCEEECCSSSCH
T ss_pred HhhhHHHHHHHHHhhhhccccceeeccccch
Confidence 9999999999999999889999888887654
|
| >d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: DNA helicase UvsW domain: DNA helicase UvsW species: Bacteriophage T4 [TaxId: 10665]
Probab=99.22 E-value=2e-11 Score=111.34 Aligned_cols=87 Identities=21% Similarity=0.161 Sum_probs=69.2
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhcCCCC
Q psy9620 135 RPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGSSTY 214 (453)
Q Consensus 135 ~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~~~~~ 214 (453)
+|+++|.+|+..++..+..++.+|||+|||++....+. .+... ...++|||||+++|+.|+.+.+.+++....
T Consensus 113 ~~rdyQ~~av~~~l~~~~~il~~pTGsGKT~i~~~i~~-~~~~~------~~~k~Liivp~~~Lv~Q~~~~f~~~~~~~~ 185 (282)
T d1rifa_ 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLAR-YYLEN------YEGKILIIVPTTALTTQMADDFVDYRLFSH 185 (282)
T ss_dssp CCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHH-HHHHH------CSSEEEEECSSHHHHHHHHHHHHHHTSCCG
T ss_pred ccchHHHHHHHHHHhcCCceeEEEcccCccHHHHHHHH-Hhhhc------ccceEEEEEcCchhHHHHHHHHHHhhcccc
Confidence 79999999999999988999999999999987654333 22222 234699999999999999999999977666
Q ss_pred ceEEEEeCCccCCC
Q psy9620 215 LRSTCVYGGASKGP 228 (453)
Q Consensus 215 ~~~~~~~gg~~~~~ 228 (453)
..+..+.++.....
T Consensus 186 ~~~~~~~~g~~~~~ 199 (282)
T d1rifa_ 186 AMIKKIGGGASKDD 199 (282)
T ss_dssp GGEEECSTTCSSTT
T ss_pred ccceeecceecccc
Confidence 66777777665543
|
| >d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.17 E-value=6.1e-11 Score=103.11 Aligned_cols=65 Identities=28% Similarity=0.245 Sum_probs=55.0
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhc
Q psy9620 135 RPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFG 210 (453)
Q Consensus 135 ~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~ 210 (453)
+|+++|.+++..+++++..++++|||+|||++++..+ ..+ +.++||+||+++|+.|+.+.+..++
T Consensus 70 ~Lr~yQ~eav~~~~~~~~~ll~~~tG~GKT~~a~~~~-~~~----------~~~~Liv~p~~~L~~q~~~~~~~~~ 134 (206)
T d2fz4a1 70 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAI-NEL----------STPTLIVVPTLALAEQWKERLGIFG 134 (206)
T ss_dssp CCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHH-HHS----------CSCEEEEESSHHHHHHHHHHHGGGC
T ss_pred CcCHHHHHHHHHHHhCCCcEEEeCCCCCceehHHhHH-HHh----------cCceeEEEcccchHHHHHHHHHhhc
Confidence 7999999999999999899999999999998764433 221 2359999999999999999998875
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=99.09 E-value=9e-11 Score=95.00 Aligned_cols=56 Identities=25% Similarity=0.319 Sum_probs=45.1
Q ss_pred HhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHh
Q psy9620 147 AMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDF 209 (453)
Q Consensus 147 i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~ 209 (453)
+.+|+++++++|||+|||++++..++..... .+.++||++|+++|++|+.+.+...
T Consensus 4 l~~~~~~il~~~tGsGKT~~~~~~~~~~~~~-------~~~~vli~~p~~~l~~q~~~~~~~~ 59 (140)
T d1yksa1 4 LKKGMTTVLDFHPGAGKTRRFLPQILAECAR-------RRLRTLVLAPTRVVLSEMKEAFHGL 59 (140)
T ss_dssp TSTTCEEEECCCTTSSTTTTHHHHHHHHHHH-------TTCCEEEEESSHHHHHHHHHHTTTS
T ss_pred HHcCCcEEEEcCCCCChhHHHHHHHHHHhhh-------cCceeeeeecchhHHHHHHHHhhhh
Confidence 3468999999999999999887666665544 3556999999999999988776543
|
| >d1nkta4 c.37.1.19 (A:397-615) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.87 E-value=9.5e-09 Score=85.77 Aligned_cols=129 Identities=16% Similarity=0.219 Sum_probs=102.8
Q ss_pred EEccccchhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEE
Q psy9620 277 EVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVA 356 (453)
Q Consensus 277 ~~~~~~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLva 356 (453)
.+....+|...+++-+..+. ....|+||.+.|.+..+.|+..|.+.+++..++++. +.+|+.-+-.=.--.-.|-||
T Consensus 12 Vy~T~~~K~~Avv~ei~~~h-~~GqPVLVGT~SVe~SE~lS~lL~~~gi~h~vLNAK--~herEAeIIAqAG~~GaVTIA 88 (219)
T d1nkta4 12 IYKTEEAKYIAVVDDVAERY-AKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAK--YHEQEATIIAVAGRRGGVTVA 88 (219)
T ss_dssp EESCHHHHHHHHHHHHHHHH-HTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSS--CHHHHHHHHHTTTSTTCEEEE
T ss_pred EEcCHHHHHHHHHHHHHHHH-hcCCCEEEeeCcHHHHHHHHHHHHHhccchhccchh--hHHHHHHHHHhcccCCcEEee
Confidence 34556677777777776664 346799999999999999999999999999999995 345555444433345679999
Q ss_pred eccCccCCCCCC-----------------------------------------------C-----cEEEEcCCCCChhHH
Q psy9620 357 TDVAARGLDVDD-----------------------------------------------V-----KFVINFDYPNNSEDY 384 (453)
Q Consensus 357 T~~~~~GiDip~-----------------------------------------------v-----~~VI~~d~p~s~~~y 384 (453)
|+++.||.||.= | -|||-.....|-.-=
T Consensus 89 TNMAGRGTDI~LGgn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIGTErHeSrRID 168 (219)
T d1nkta4 89 TNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRRID 168 (219)
T ss_dssp ETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSSHHHH
T ss_pred ccccCCCCceeecCchhhhhHHHhhhcccCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecccccccccc
Confidence 999999999931 1 168887777787777
Q ss_pred HHhhhcccCCCCcceEEEEEcCCC
Q psy9620 385 IHRIGRTGRSDNTGTSYTFFTQQN 408 (453)
Q Consensus 385 ~qr~GRagR~g~~g~~~~~~~~~~ 408 (453)
.|..||+||.|.+|.+..|++-+|
T Consensus 169 nQLRGRsGRQGDPGsSrFflSLeD 192 (219)
T d1nkta4 169 NQLRGRSGRQGDPGESRFYLSLGD 192 (219)
T ss_dssp HHHHHTSSGGGCCEEEEEEEETTS
T ss_pred ccccccccccCCCccceeEEeccH
Confidence 899999999999999999998776
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=98.86 E-value=2.4e-09 Score=86.24 Aligned_cols=51 Identities=25% Similarity=0.112 Sum_probs=39.4
Q ss_pred cCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhc
Q psy9620 149 SGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFG 210 (453)
Q Consensus 149 ~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~ 210 (453)
..+..++.+|||||||+.+...+ .. .+.++||++|+++|++|+.+.+.+..
T Consensus 7 ~~~~~ll~apTGsGKT~~~~~~~----~~-------~~~~vli~~P~~~l~~q~~~~~~~~~ 57 (136)
T d1a1va1 7 SFQVAHLHAPTGSGKSTKVPAAY----AA-------QGYKVLVLNPSVAATLGFGAYMSKAH 57 (136)
T ss_dssp SCEEEEEECCTTSCTTTHHHHHH----HT-------TTCCEEEEESCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHH----HH-------cCCcEEEEcChHHHHHHHHHHHHHHh
Confidence 34567999999999997542222 11 35569999999999999999988874
|
| >d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Rad54-like, Rad54L species: Zebra fish (Danio rerio) [TaxId: 7955]
Probab=97.69 E-value=4.3e-05 Score=69.17 Aligned_cols=86 Identities=20% Similarity=0.232 Sum_probs=57.1
Q ss_pred CCCHHHHHHHHHHh---------cCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHH
Q psy9620 135 RPTPIQAQGWPIAM---------SGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEV 205 (453)
Q Consensus 135 ~~~~~Q~~~i~~i~---------~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~ 205 (453)
.++|+|.+++..+. .+..+|+.-..|.|||+..+. ++..+.............+|||||.. |..|+.++
T Consensus 55 ~Lr~hQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~qaia-~l~~l~~~~~~~~~~~~~~LIV~P~s-l~~qW~~E 132 (298)
T d1z3ix2 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCIT-LIWTLLKQSPDCKPEIDKVIVVSPSS-LVRNWYNE 132 (298)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHH-HHHHHHHCCTTSSCSCSCEEEEECHH-HHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHhhhhccCCceEEEeCCCCCHHHHHHH-HHHHHHHhcccccCCCCcEEEEccch-hhHHHHHH
Confidence 68999999997653 244688888999999986543 33344333222222334699999974 88999999
Q ss_pred HHHhcCCCCceEEEEeCC
Q psy9620 206 ARDFGSSTYLRSTCVYGG 223 (453)
Q Consensus 206 ~~~~~~~~~~~~~~~~gg 223 (453)
+.++.... ..+..++++
T Consensus 133 i~k~~~~~-~~~v~~~~~ 149 (298)
T d1z3ix2 133 VGKWLGGR-VQPVAIDGG 149 (298)
T ss_dssp HHHHHGGG-CCEEEECSS
T ss_pred HHhhcCCc-eeEEEEeCc
Confidence 99876432 344444444
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=97.59 E-value=4.9e-05 Score=68.80 Aligned_cols=71 Identities=20% Similarity=0.110 Sum_probs=51.7
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhcC
Q psy9620 135 RPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGS 211 (453)
Q Consensus 135 ~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~~ 211 (453)
+++|-|.+|+.. ...+++|.|+.|||||.+.+.-+...+..... +..++||+++|+.++..+...+.++..
T Consensus 1 ~L~~eQ~~av~~--~~~~~lI~g~aGTGKTt~l~~rv~~ll~~~~~----~~~~ILvlt~tn~a~~~i~~~~~~~~~ 71 (306)
T d1uaaa1 1 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGY----QARHIAAVTFTNKAAREMKERVGQTLG 71 (306)
T ss_dssp CCCHHHHHHHHC--CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCC----CGGGEEEEESSHHHHHHHHHHHHHHSC
T ss_pred CcCHHHHHHHhC--CCCCEEEEeeCCccHHHHHHHHHHHHHHhcCC----ChhHEEEEeCcHHHHHHHHHHHHHhcC
Confidence 478999999965 34569999999999998754433333322211 223599999999999999888887643
|
| >d1tf5a3 c.37.1.19 (A:1-226,A:349-395) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Bacillus subtilis [TaxId: 1423]
Probab=97.54 E-value=0.00021 Score=61.92 Aligned_cols=83 Identities=25% Similarity=0.216 Sum_probs=70.5
Q ss_pred CCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhcC
Q psy9620 132 GFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGS 211 (453)
Q Consensus 132 g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~~ 211 (453)
|. .|+++|.-.--.+..|+ |+.+.||-|||++..+|+...... |..|-|++..--||..=++++..+..
T Consensus 78 G~-RhyDVQLiGgi~L~~G~--iaem~TGEGKTL~a~l~a~l~al~--------g~~vhvvTvNdyLA~RDae~m~~iy~ 146 (273)
T d1tf5a3 78 GM-FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNALT--------GKGVHVVTVNEYLASRDAEQMGKIFE 146 (273)
T ss_dssp SC-CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHTT--------SSCEEEEESSHHHHHHHHHHHHHHHH
T ss_pred ce-EEehhHHHHHHHHHhhh--heeecCCCcchhHHHHHHHHHHhc--------CCCceEEecCccccchhhhHHhHHHH
Confidence 55 88999988888888887 999999999999999998866654 44588999999999999999999988
Q ss_pred CCCceEEEEeCCcc
Q psy9620 212 STYLRSTCVYGGAS 225 (453)
Q Consensus 212 ~~~~~~~~~~gg~~ 225 (453)
.+++.+.++.....
T Consensus 147 ~lGlsvg~~~~~~~ 160 (273)
T d1tf5a3 147 FLGLTVGLNLNSMS 160 (273)
T ss_dssp HTTCCEEECCTTSC
T ss_pred HcCCCccccccccC
Confidence 89999998876543
|
| >d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Helicase of the SNF2/Rad54 hamily species: Sulfolobus solfataricus [TaxId: 2287]
Probab=97.45 E-value=0.00023 Score=61.56 Aligned_cols=97 Identities=19% Similarity=0.228 Sum_probs=62.8
Q ss_pred CCCHHHHHHHHHHh----cCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhc
Q psy9620 135 RPTPIQAQGWPIAM----SGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFG 210 (453)
Q Consensus 135 ~~~~~Q~~~i~~i~----~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~ 210 (453)
.+.|+|.+++..+. .+..+|+.-++|.|||+..+. ++.++.... ...++||||| ..+..|+.+++.++.
T Consensus 12 ~L~~yQ~~~v~~~~~~~~~~~g~iLaDe~GlGKT~~~i~-~~~~~~~~~-----~~~~~LIv~p-~~l~~~W~~e~~~~~ 84 (230)
T d1z63a1 12 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIA-VFSDAKKEN-----ELTPSLVICP-LSVLKNWEEELSKFA 84 (230)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHH-HHHHHHHTT-----CCSSEEEEEC-STTHHHHHHHHHHHC
T ss_pred chhHHHHHHHHHHHHhhhcCCCEEEEeCCCCChHHHHHH-hhhhhhhcc-----cccccceecc-hhhhhHHHHHHHhhc
Confidence 68999999997553 355688889999999988644 444444332 2335899999 567788999999886
Q ss_pred CCCCceEEEEeCCccCCCCCCceEEEEecc
Q psy9620 211 SSTYLRSTCVYGGASKGPQPDRQVLMWSAT 240 (453)
Q Consensus 211 ~~~~~~~~~~~gg~~~~~~~~~q~v~~SAT 240 (453)
... .+.............+..+++.+..
T Consensus 85 ~~~--~~~~~~~~~~~~~~~~~~vvi~~~~ 112 (230)
T d1z63a1 85 PHL--RFAVFHEDRSKIKLEDYDIILTTYA 112 (230)
T ss_dssp TTS--CEEECSSSTTSCCGGGSSEEEEEHH
T ss_pred ccc--cceeeccccchhhccCcCEEEeeHH
Confidence 433 3333333332222244556665543
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=97.11 E-value=0.00049 Score=62.38 Aligned_cols=70 Identities=16% Similarity=0.129 Sum_probs=51.4
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhc
Q psy9620 135 RPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFG 210 (453)
Q Consensus 135 ~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~ 210 (453)
.+++-|.+++... ...++|.|+.|||||.+.+--+...+.. ... ..-++|++++|+.++..+...+....
T Consensus 11 ~L~~eQ~~~v~~~--~g~~lV~g~aGSGKTt~l~~ri~~ll~~-~~~---~p~~il~lt~t~~aa~~~~~~~~~~~ 80 (318)
T d1pjra1 11 HLNKEQQEAVRTT--EGPLLIMAGAGSGKTRVLTHRIAYLMAE-KHV---APWNILAITFTNKAAREMRERVQSLL 80 (318)
T ss_dssp TSCHHHHHHHHCC--SSCEEEEECTTSCHHHHHHHHHHHHHHT-TCC---CGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHhCC--CCCEEEEecCCccHHHHHHHHHHHHHHc-CCC---CHHHeEeEeccHHHHHHHHHHHHhhc
Confidence 5899999999753 4579999999999998764433333322 211 12359999999999999988887653
|
| >d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.96 E-value=0.0014 Score=57.13 Aligned_cols=87 Identities=13% Similarity=0.166 Sum_probs=66.7
Q ss_pred CCcEEEEEcchhHHHHHHHHHHh----cCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCc-cCCCCCCCcEEEE
Q psy9620 300 ENKTIIFAETKRKVDKITKSIQN----YGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAA-RGLDVDDVKFVIN 374 (453)
Q Consensus 300 ~~~~lVF~~s~~~~~~l~~~L~~----~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~-~GiDip~v~~VI~ 374 (453)
+.++++.++|..-|.+.++.+.. .++.+..+|+.++..+|..++...++|+++|+|+|-.+- ..+.+.++.+||.
T Consensus 132 g~q~~~m~Pt~~La~Qh~~~~~~~f~~~~~~v~~l~~~~~~~~r~~~~~~~~~g~~~iiIGThsl~~~~~~f~~Lglvii 211 (264)
T d1gm5a3 132 GFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVII 211 (264)
T ss_dssp TSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCEEEE
T ss_pred ccceeEEeehHhhhHHHHHHHHHhhhhccccceeeccccchHHHHHHHHHHHCCCCCEEEeehHHhcCCCCccccceeee
Confidence 56999999999988887777665 378999999999999999999999999999999997655 5678888887774
Q ss_pred cCCCCChhHHHHhh
Q psy9620 375 FDYPNNSEDYIHRI 388 (453)
Q Consensus 375 ~d~p~s~~~y~qr~ 388 (453)
=.- .-..|.||-
T Consensus 212 DEq--H~fgv~Qr~ 223 (264)
T d1gm5a3 212 DEQ--HRFGVKQRE 223 (264)
T ss_dssp ESC--CCC-----C
T ss_pred ccc--cccchhhHH
Confidence 221 122466664
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=96.70 E-value=0.0041 Score=57.04 Aligned_cols=70 Identities=19% Similarity=0.190 Sum_probs=51.7
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHH
Q psy9620 135 RPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARD 208 (453)
Q Consensus 135 ~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~ 208 (453)
...+.|.+|+..++.++-++|+++.|||||.+.. .++..+..... ..+.++++++||-.-|..+.+....
T Consensus 148 ~~~~~Q~~A~~~al~~~~~vI~G~pGTGKTt~i~-~~l~~l~~~~~---~~~~~I~l~ApTgkAA~~L~e~~~~ 217 (359)
T d1w36d1 148 DEINWQKVAAAVALTRRISVISGGPGTGKTTTVA-KLLAALIQMAD---GERCRIRLAAPTGKAAARLTESLGK 217 (359)
T ss_dssp TSCCHHHHHHHHHHTBSEEEEECCTTSTHHHHHH-HHHHHHHHTCS---SCCCCEEEEBSSHHHHHHHHHHHTH
T ss_pred ccccHHHHHHHHHHcCCeEEEEcCCCCCceehHH-HHHHHHHHHHh---ccCCeEEEecCcHHHHHHHHHHHHH
Confidence 4678899999999999999999999999997632 22223322211 2456799999999988887766544
|
| >d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=96.69 E-value=0.0076 Score=51.34 Aligned_cols=93 Identities=14% Similarity=0.164 Sum_probs=74.2
Q ss_pred ccchhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHh----cCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEE
Q psy9620 281 EHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQN----YGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVA 356 (453)
Q Consensus 281 ~~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~----~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLva 356 (453)
..-|....+..+.... ..+.++++.+|+..-+.+.++.+++ .+..+..+|+.++..+|..+.+.+.+|+.+|||.
T Consensus 86 GsGKT~V~~~a~~~~~-~~g~qv~~l~Pt~~La~Q~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~g~~~iviG 164 (233)
T d2eyqa3 86 GFGKTEVAMRAAFLAV-DNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIG 164 (233)
T ss_dssp CTTTHHHHHHHHHHHH-TTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEE
T ss_pred CCCcHHHHHHHHHHHH-HcCCceEEEccHHHhHHHHHHHHHHHHhhCCCEEEeccCcccchhHHHHHHHHhCCCCCEEEe
Confidence 3445544444444333 2467999999999999999999886 4678999999999999999999999999999999
Q ss_pred eccCc-cCCCCCCCcEEEE
Q psy9620 357 TDVAA-RGLDVDDVKFVIN 374 (453)
Q Consensus 357 T~~~~-~GiDip~v~~VI~ 374 (453)
|-.+- ..+.+++..+||.
T Consensus 165 ths~l~~~~~f~~LgLiIi 183 (233)
T d2eyqa3 165 THKLLQSDVKFKDLGLLIV 183 (233)
T ss_dssp CTHHHHSCCCCSSEEEEEE
T ss_pred ehhhhccCCccccccceee
Confidence 98554 4688888887775
|
| >d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Bacillus caldotenax [TaxId: 1395]
Probab=96.29 E-value=0.0033 Score=58.58 Aligned_cols=67 Identities=24% Similarity=0.329 Sum_probs=49.4
Q ss_pred CCCHHHHHHHHHHhc----C-CcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHh
Q psy9620 135 RPTPIQAQGWPIAMS----G-SNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDF 209 (453)
Q Consensus 135 ~~~~~Q~~~i~~i~~----g-~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~ 209 (453)
.|+.-|=+||..+.+ | ++.++.+-||||||++ ++.+..-. +..+|||+|+..+|.|+++.++.+
T Consensus 11 ~p~gDQP~aI~~l~~~l~~g~~~q~l~GltGS~ka~~--iA~l~~~~---------~rp~LVVt~n~~~A~qL~~dL~~~ 79 (413)
T d1t5la1 11 EPQGDQPQAIAKLVDGLRRGVKHQTLLGATGTGKTFT--ISNVIAQV---------NKPTLVIAHNKTLAGQLYSELKEF 79 (413)
T ss_dssp CCCTTHHHHHHHHHHHHHHTCSEEEEEECTTSCHHHH--HHHHHHHH---------TCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHhcCCCcEEEeCCCCcHHHHH--HHHHHHHh---------CCCEEEEeCCHHHHHHHHHHHHHH
Confidence 677788887776553 4 5788999999999954 33222211 112899999999999999999998
Q ss_pred cCC
Q psy9620 210 GSS 212 (453)
Q Consensus 210 ~~~ 212 (453)
...
T Consensus 80 l~~ 82 (413)
T d1t5la1 80 FPH 82 (413)
T ss_dssp CTT
T ss_pred cCC
Confidence 643
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=94.35 E-value=0.018 Score=51.77 Aligned_cols=65 Identities=22% Similarity=0.233 Sum_probs=38.9
Q ss_pred HHHHHHCCCCC---CCHHHHHHHHH-HhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHH
Q psy9620 125 LKEVKRQGFDR---PTPIQAQGWPI-AMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTREL 198 (453)
Q Consensus 125 ~~~l~~~g~~~---~~~~Q~~~i~~-i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~L 198 (453)
+..+.+.|+-. ..+.+...+.. +..+++++++++||||||.. +-.++..+. ..-+++.+-.+.||
T Consensus 137 l~~l~~~g~~~~~~~~~~~~~~l~~~v~~~~nili~G~tgSGKTT~-l~al~~~i~--------~~~rivtiEd~~El 205 (323)
T d1g6oa_ 137 HSFFEEQGFYNLLDNKEQAISAIKDGIAIGKNVIVCGGTGSGKTTY-IKSIMEFIP--------KEERIISIEDTEEI 205 (323)
T ss_dssp HHHHHHTTTTTTCSSHHHHHHHHHHHHHHTCCEEEEESTTSSHHHH-HHHHGGGSC--------TTCCEEEEESSCCC
T ss_pred hHHHHHHhhhcccccHHHHHHHHHHHHHhCCCEEEEeeccccchHH-HHHHhhhcc--------cccceeeccchhhh
Confidence 34455555433 23444444443 45789999999999999964 333333221 23357777777775
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=94.20 E-value=0.032 Score=46.44 Aligned_cols=18 Identities=33% Similarity=0.176 Sum_probs=13.8
Q ss_pred cEEEEecCCCcchhhhhH
Q psy9620 152 NMVGVAQTGSGKTLAYML 169 (453)
Q Consensus 152 d~li~a~TGsGKT~~~~l 169 (453)
-+++++|||+|||.+..-
T Consensus 12 vi~lvGp~GvGKTTTiaK 29 (207)
T d1ls1a2 12 LWFLVGLQGSGKTTTAAK 29 (207)
T ss_dssp EEEEECCTTTTHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 356789999999977543
|
| >d1c4oa1 c.37.1.19 (A:2-409) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Thermus thermophilus [TaxId: 274]
Probab=93.67 E-value=0.059 Score=49.82 Aligned_cols=66 Identities=27% Similarity=0.369 Sum_probs=46.6
Q ss_pred CCCHHHHHHHHHHh----cCC-cEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHh
Q psy9620 135 RPTPIQAQGWPIAM----SGS-NMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDF 209 (453)
Q Consensus 135 ~~~~~Q~~~i~~i~----~g~-d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~ 209 (453)
.|+.-|-+||..+. .++ .+.+.+-+||+|+++ ++.+..-. +..+|||+|+.+.|.++++.+..+
T Consensus 8 ~p~~dqp~aI~~l~~~L~~g~~~~~L~GlsgS~ka~~--~A~l~~~~---------~rp~LvVt~~~~~A~~l~~dL~~~ 76 (408)
T d1c4oa1 8 SPKGDQPKAIAGLVEALRDGERFVTLLGATGTGKTVT--MAKVIEAL---------GRPALVLAPNKILAAQLAAEFREL 76 (408)
T ss_dssp CCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHH--HHHHHHHH---------TCCEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHhcCCCcEEEecCCCCHHHHH--HHHHHHHh---------CCCEEEEeCCHHHHHHHHHHHHHh
Confidence 55666766776544 454 468889999999953 33332211 112899999999999999999998
Q ss_pred cC
Q psy9620 210 GS 211 (453)
Q Consensus 210 ~~ 211 (453)
..
T Consensus 77 l~ 78 (408)
T d1c4oa1 77 FP 78 (408)
T ss_dssp CT
T ss_pred cC
Confidence 54
|
| >d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=93.49 E-value=0.19 Score=41.59 Aligned_cols=80 Identities=21% Similarity=0.292 Sum_probs=58.2
Q ss_pred HHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhc----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecc-----C
Q psy9620 290 GLLNDISSKDENKTIIFAETKRKVDKITKSIQNY----GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDV-----A 360 (453)
Q Consensus 290 ~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~-----~ 360 (453)
.++.........++||.|++++.|.++.+.+... +..+..++++.+..++...+ + ..+|||+|+- +
T Consensus 62 ~~~~~~~~~~~~~~lil~pt~~l~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~l---~--~~~IlV~TP~~l~~~l 136 (208)
T d1hv8a1 62 PLIELVNENNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKAL---K--NANIVVGTPGRILDHI 136 (208)
T ss_dssp HHHHHSCSSSSCCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHH---H--TCSEEEECHHHHHHHH
T ss_pred ccccccccccCcceEEEeeccccchhhhhhhhhhcccCCeEEEEeeCCCChHHHHHhc---C--CCCEEEEChHHHHHHH
Confidence 3344444445568999999999999998887753 67788899988877765444 2 3789999952 2
Q ss_pred -ccCCCCCCCcEEEE
Q psy9620 361 -ARGLDVDDVKFVIN 374 (453)
Q Consensus 361 -~~GiDip~v~~VI~ 374 (453)
...+++.++.++|.
T Consensus 137 ~~~~~~~~~l~~lVi 151 (208)
T d1hv8a1 137 NRGTLNLKNVKYFIL 151 (208)
T ss_dssp HTTCSCTTSCCEEEE
T ss_pred HcCCCCcccCcEEEE
Confidence 34578889988774
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=92.98 E-value=0.15 Score=42.08 Aligned_cols=51 Identities=16% Similarity=0.091 Sum_probs=27.9
Q ss_pred CCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCC-HHHHHHHHHHHH
Q psy9620 150 GSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPT-RELAQQIQEVAR 207 (453)
Q Consensus 150 g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt-r~La~q~~~~~~ 207 (453)
++-+++++|||+|||.+..=.+. ++... ....+||.+-| |.=|.++.+.+.
T Consensus 6 ~~vi~lvGptGvGKTTTiaKLA~-~~~~~------g~kV~lit~Dt~R~gA~eQL~~~a 57 (207)
T d1okkd2 6 GRVVLVVGVNGVGKTTTIAKLGR-YYQNL------GKKVMFCAGDTFRAAGGTQLSEWG 57 (207)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHH-HHHTT------TCCEEEECCCCSSTTHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH-HHHHC------CCcEEEEEeccccccchhhHhhcc
Confidence 34567899999999987543222 22221 12345555554 555544443333
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=91.94 E-value=0.24 Score=40.94 Aligned_cols=17 Identities=29% Similarity=0.288 Sum_probs=13.7
Q ss_pred EEEEecCCCcchhhhhH
Q psy9620 153 MVGVAQTGSGKTLAYML 169 (453)
Q Consensus 153 ~li~a~TGsGKT~~~~l 169 (453)
+++++|||+|||.+..=
T Consensus 12 i~lvGptGvGKTTTiAK 28 (211)
T d2qy9a2 12 ILMVGVNGVGKTTTIGK 28 (211)
T ss_dssp EEEECCTTSCHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 56799999999987543
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=91.57 E-value=0.056 Score=49.24 Aligned_cols=18 Identities=50% Similarity=0.610 Sum_probs=15.5
Q ss_pred CCcEEEEecCCCcchhhh
Q psy9620 150 GSNMVGVAQTGSGKTLAY 167 (453)
Q Consensus 150 g~d~li~a~TGsGKT~~~ 167 (453)
-.++|+++|||+|||..+
T Consensus 68 ~~niLfiGPTGvGKTElA 85 (364)
T d1um8a_ 68 KSNILLIGPTGSGKTLMA 85 (364)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CcceeeeCCCCccHHHHH
Confidence 367999999999999765
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=90.95 E-value=0.5 Score=38.96 Aligned_cols=38 Identities=26% Similarity=0.207 Sum_probs=22.6
Q ss_pred cEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCH
Q psy9620 152 NMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTR 196 (453)
Q Consensus 152 d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr 196 (453)
-+++++|||+|||.+..=.+ .++... ....+||-+.|.
T Consensus 13 vi~lvGptGvGKTTTiAKLA-a~~~~~------~~kV~lit~Dt~ 50 (213)
T d1vmaa2 13 VIMVVGVNGTGKTTSCGKLA-KMFVDE------GKSVVLAAADTF 50 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHH-HHHHHT------TCCEEEEEECTT
T ss_pred EEEEECCCCCCHHHHHHHHH-HHHHHC------CCceEEEeeccc
Confidence 35679999999998754322 223221 233566666643
|
| >d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.88 E-value=0.68 Score=38.45 Aligned_cols=86 Identities=16% Similarity=0.175 Sum_probs=61.3
Q ss_pred hhhHHHHHHhhhcC-CCCcEEEEEcchhHHHHHHHHHHhc----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecc
Q psy9620 285 ENKLFGLLNDISSK-DENKTIIFAETKRKVDKITKSIQNY----GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDV 359 (453)
Q Consensus 285 ~~~l~~ll~~~~~~-~~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~ 359 (453)
...++-++..+... ...++||+|+|++-|..+++.+... ++.+..+.++.+..+....++. ..+|||+|.-
T Consensus 69 layllPil~~l~~~~~~~~~lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~g~~~~~~~~~~l~~----~~~Ilv~TPg 144 (222)
T d2j0sa1 69 ATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDY----GQHVVAGTPG 144 (222)
T ss_dssp HHHHHHHHHTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHH----CCSEEEECHH
T ss_pred hhhcccccccccccccCceeEEecchHHHHHHHHHHHHHHhCccceeEEEEeecccchhhHHHhcc----CCeEEeCCCC
Confidence 34445555555332 3447999999999999999888764 5678889998887766555432 4689999952
Q ss_pred ------CccCCCCCCCcEEEE
Q psy9620 360 ------AARGLDVDDVKFVIN 374 (453)
Q Consensus 360 ------~~~GiDip~v~~VI~ 374 (453)
....+++.++.++|.
T Consensus 145 rl~~~~~~~~~~~~~l~~lVl 165 (222)
T d2j0sa1 145 RVFDMIRRRSLRTRAIKMLVL 165 (222)
T ss_dssp HHHHHHHTTSSCCTTCCEEEE
T ss_pred cHHhcccccccccccceeeee
Confidence 245678888998774
|
| >d2eyqa2 c.37.1.19 (A:349-465) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=89.58 E-value=0.14 Score=38.08 Aligned_cols=64 Identities=9% Similarity=0.052 Sum_probs=49.6
Q ss_pred CCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEEE
Q psy9620 299 DENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVIN 374 (453)
Q Consensus 299 ~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~ 374 (453)
...++|+.|.+...++.|.+.|...++.+..+.+. ..|.++. +.|+..-++.|.-+|+.+++|.
T Consensus 33 ~~~~Vli~a~s~g~~erl~e~L~~~~i~~~~~~~~----------~~~~~~~--~~i~~~~l~~GF~~~~~~l~vI 96 (117)
T d2eyqa2 33 FDGPVVFSVESEGRREALGELLARIKIAPQRIMRL----------DEASDRG--RYLMIGAAEHGFVDTVRNLALI 96 (117)
T ss_dssp CCSCCCEEESSHHHHHHHHHHHGGGTCCCEECSSG----------GGCCTTC--CEEEECCCCSCEEETTTTEEEE
T ss_pred CCCeEEEEECCccHHHHHHHHHHHcCCCceEecCh----------hhhcCce--EEEEEecCccccccCCCCEEEE
Confidence 45689999999999999999999999987665442 1233333 5666678999998899888776
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=89.52 E-value=0.16 Score=46.79 Aligned_cols=38 Identities=16% Similarity=0.253 Sum_probs=24.7
Q ss_pred CHHHHHHHHHHhcCC--cEEEEecCCCcchhhhhHHHHHHh
Q psy9620 137 TPIQAQGWPIAMSGS--NMVGVAQTGSGKTLAYMLPAIVHI 175 (453)
Q Consensus 137 ~~~Q~~~i~~i~~g~--d~li~a~TGsGKT~~~~l~~l~~~ 175 (453)
.+.|.+.|..++... =+|+++|||||||.+. ..++..+
T Consensus 143 ~~~~~~~l~~l~~~~~GliLvtGpTGSGKSTTl-~~~l~~~ 182 (401)
T d1p9ra_ 143 TAHNHDNFRRLIKRPHGIILVTGPTGSGKSTTL-YAGLQEL 182 (401)
T ss_dssp CHHHHHHHHHHHTSSSEEEEEECSTTSCHHHHH-HHHHHHH
T ss_pred cHHHHHHHHHHHhhhhceEEEEcCCCCCccHHH-HHHhhhh
Confidence 455666666665443 3778899999999763 3345444
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=89.28 E-value=0.059 Score=50.43 Aligned_cols=19 Identities=32% Similarity=0.398 Sum_probs=16.4
Q ss_pred cCCcEEEEecCCCcchhhh
Q psy9620 149 SGSNMVGVAQTGSGKTLAY 167 (453)
Q Consensus 149 ~g~d~li~a~TGsGKT~~~ 167 (453)
..+|+|+++|||+|||+.+
T Consensus 48 ~ksNILliGPTGvGKTlLA 66 (443)
T d1g41a_ 48 TPKNILMIGPTGVGKTEIA 66 (443)
T ss_dssp CCCCEEEECCTTSSHHHHH
T ss_pred ccccEEEECCCCCCHHHHH
Confidence 4679999999999999654
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=88.73 E-value=0.14 Score=45.31 Aligned_cols=19 Identities=32% Similarity=0.398 Sum_probs=16.3
Q ss_pred cCCcEEEEecCCCcchhhh
Q psy9620 149 SGSNMVGVAQTGSGKTLAY 167 (453)
Q Consensus 149 ~g~d~li~a~TGsGKT~~~ 167 (453)
..+.+|+++|||+|||+.+
T Consensus 48 ~~~~iLl~GPpG~GKT~lA 66 (309)
T d1ofha_ 48 TPKNILMIGPTGVGKTEIA 66 (309)
T ss_dssp CCCCEEEECCTTSSHHHHH
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 3578999999999999765
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=87.85 E-value=0.25 Score=40.83 Aligned_cols=64 Identities=16% Similarity=0.118 Sum_probs=36.0
Q ss_pred CcEEEEEcch--hHHHHHHHHHHhcCCeEEEEcCCCCHHH-HHHHHHHHhcCCCcEEEEeccCccCCCCCCC
Q psy9620 301 NKTIIFAETK--RKVDKITKSIQNYGWAAVGIHGDKSQQE-RDYVLKEFRNGRAGILVATDVAARGLDVDDV 369 (453)
Q Consensus 301 ~~~lVF~~s~--~~~~~l~~~L~~~~~~~~~~h~~~~~~~-r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v 369 (453)
...||...+. +..+.+...+...++...+++- ++... --.+++........|...|+ |=+++|+
T Consensus 129 ~~~LVl~a~~~~~~~~~~~~~~~~~~~~~lI~TK-lDet~~~G~~l~~~~~~~lPi~~it~----Gq~v~DL 195 (211)
T d1j8yf2 129 EVTLVIDASIGQKAYDLASKFNQASKIGTIIITK-MDGTAKGGGALSAVAATGATIKFIGT----GEKIDEL 195 (211)
T ss_dssp EEEEEEEGGGGGGHHHHHHHHHHHCTTEEEEEEC-TTSCSCHHHHHHHHHTTTCCEEEEEC----SSSTTCE
T ss_pred eEEEEEecccCcchHHHHhhhhcccCcceEEEec-ccCCCcccHHHHHHHHHCcCEEEEeC----CCCcccC
Confidence 3456665543 3456666666666777655543 22222 23455556667788887774 4444553
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.42 E-value=0.24 Score=39.30 Aligned_cols=25 Identities=20% Similarity=0.151 Sum_probs=17.8
Q ss_pred CcEEEEecCCCcchhhhhHHHHHHhh
Q psy9620 151 SNMVGVAQTGSGKTLAYMLPAIVHIN 176 (453)
Q Consensus 151 ~d~li~a~TGsGKT~~~~l~~l~~~~ 176 (453)
|++++.+|+|+|||... ..++..+.
T Consensus 2 k~v~ItG~~GtGKTtl~-~~i~~~l~ 26 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLI-HKASEVLK 26 (189)
T ss_dssp CCEEEESCCSSCHHHHH-HHHHHHHH
T ss_pred cEEEEECCCCCcHHHHH-HHHHHHHH
Confidence 68999999999999743 33334443
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=86.96 E-value=0.2 Score=46.40 Aligned_cols=44 Identities=14% Similarity=0.220 Sum_probs=30.4
Q ss_pred cCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHH
Q psy9620 149 SGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQ 200 (453)
Q Consensus 149 ~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~ 200 (453)
..++++|.|+||||||.+. ..++..+.. .+..+||+=|.-++..
T Consensus 49 ~~~H~~I~G~tGsGKT~~l-~~li~~~~~-------~g~~~iiiD~kge~~~ 92 (433)
T d1e9ra_ 49 EPRHLLVNGATGTGKSVLL-RELAYTGLL-------RGDRMVIVDPNGDMLS 92 (433)
T ss_dssp GGGCEEEEECTTSSHHHHH-HHHHHHHHH-------TTCEEEEEEETTHHHH
T ss_pred ccceEEEEeCCCCcHHHHH-HHHHHHHHh-------CCCCEEEEeCChhHHH
Confidence 4568999999999999764 334444433 2445888888877643
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=85.40 E-value=0.25 Score=40.71 Aligned_cols=34 Identities=15% Similarity=0.125 Sum_probs=25.4
Q ss_pred CCHHHHHHHHHHh----cCC---cEEEEecCCCcchhhhhH
Q psy9620 136 PTPIQAQGWPIAM----SGS---NMVGVAQTGSGKTLAYML 169 (453)
Q Consensus 136 ~~~~Q~~~i~~i~----~g~---d~li~a~TGsGKT~~~~l 169 (453)
++|+|..++..+. +++ .+|+.||.|+|||..+..
T Consensus 3 ~yPw~~~~~~~l~~~~~~~~l~h~lLl~Gp~G~GKtt~a~~ 43 (207)
T d1a5ta2 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYA 43 (207)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHcCCcCeEEEEECCCCCcHHHHHHH
Confidence 5688888887654 333 489999999999976544
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=84.83 E-value=0.21 Score=38.80 Aligned_cols=20 Identities=25% Similarity=0.225 Sum_probs=16.7
Q ss_pred CCcEEEEecCCCcchhhhhH
Q psy9620 150 GSNMVGVAQTGSGKTLAYML 169 (453)
Q Consensus 150 g~d~li~a~TGsGKT~~~~l 169 (453)
.++++++|+.|||||.....
T Consensus 2 ~k~I~l~G~~GsGKSTvak~ 21 (169)
T d1kaga_ 2 KRNIFLVGPMGAGKSTIGRQ 21 (169)
T ss_dssp CCCEEEECCTTSCHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHH
Confidence 47899999999999976543
|
| >d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.03 E-value=3.6 Score=33.23 Aligned_cols=85 Identities=15% Similarity=0.259 Sum_probs=57.6
Q ss_pred hHHHHHHhhhc-CCCCcEEEEEcchhHHHHHHHHHHhc-----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecc-
Q psy9620 287 KLFGLLNDISS-KDENKTIIFAETKRKVDKITKSIQNY-----GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDV- 359 (453)
Q Consensus 287 ~l~~ll~~~~~-~~~~~~lVF~~s~~~~~~l~~~L~~~-----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~- 359 (453)
.++.++..+.. ....+++|.|++++-+..+.+.+... ...+..++|+.+...... .+.....+|||+|+-
T Consensus 55 ~~lp~l~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~l~~~~~~ilI~TP~r 131 (207)
T d1t6na_ 55 FVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEE---VLKKNCPHIVVGTPGR 131 (207)
T ss_dssp HHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHH---HHHHSCCSEEEECHHH
T ss_pred cccceeeeecccCCCceEEEEeccchhhHHHHHHHHHHHhhCCCceeEEEeccccHHHHHH---HHHhcCCCEEEeCcch
Confidence 34444544432 22347999999999999999888754 245677788877655433 344567899999973
Q ss_pred ----C-ccCCCCCCCcEEEE
Q psy9620 360 ----A-ARGLDVDDVKFVIN 374 (453)
Q Consensus 360 ----~-~~GiDip~v~~VI~ 374 (453)
+ ...+++.++.++|.
T Consensus 132 l~~~~~~~~~~l~~l~~lVl 151 (207)
T d1t6na_ 132 ILALARNKSLNLKHIKHFIL 151 (207)
T ss_dssp HHHHHHTTSSCCTTCCEEEE
T ss_pred hhhhccCCceeccccceeeh
Confidence 1 23578888887774
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=82.02 E-value=0.27 Score=41.24 Aligned_cols=18 Identities=22% Similarity=0.224 Sum_probs=15.3
Q ss_pred CcEEEEecCCCcchhhhh
Q psy9620 151 SNMVGVAQTGSGKTLAYM 168 (453)
Q Consensus 151 ~d~li~a~TGsGKT~~~~ 168 (453)
.++|+.||+|+|||.++-
T Consensus 36 ~~~L~~GPpGtGKT~lA~ 53 (238)
T d1in4a2 36 DHVLLAGPPGLGKTTLAH 53 (238)
T ss_dssp CCEEEESSTTSSHHHHHH
T ss_pred CeEEEECCCCCcHHHHHH
Confidence 479999999999997653
|
| >d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEAD box RNA helicase rck/p54 species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.20 E-value=3.7 Score=33.08 Aligned_cols=85 Identities=16% Similarity=0.241 Sum_probs=57.9
Q ss_pred hhHHHHHHhhhc-CCCCcEEEEEcchhHHHHHHHHHHhc-----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecc
Q psy9620 286 NKLFGLLNDISS-KDENKTIIFAETKRKVDKITKSIQNY-----GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDV 359 (453)
Q Consensus 286 ~~l~~ll~~~~~-~~~~~~lVF~~s~~~~~~l~~~L~~~-----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~ 359 (453)
..++-++..+.. .....+||.|++++.+..+.+.+... +..+..++++....+....+ ....+|||+|+-
T Consensus 56 ayllP~l~~~~~~~~~~~~lil~pt~el~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l----~~~~~ivv~TPg 131 (206)
T d1veca_ 56 AYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRL----DDTVHVVIATPG 131 (206)
T ss_dssp HHHHHHHHHCCTTSCSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHT----TSCCSEEEECHH
T ss_pred ccccchhhcccccccCcceEEEeecchhhHHHHHHHHHHhhcccCcccccccCCccHHHHHHHH----HhccCeEEeCCc
Confidence 334445544432 33457999999999999999887643 45677778887766654443 457889999962
Q ss_pred ------CccCCCCCCCcEEEE
Q psy9620 360 ------AARGLDVDDVKFVIN 374 (453)
Q Consensus 360 ------~~~GiDip~v~~VI~ 374 (453)
-...+++.++.++|.
T Consensus 132 rl~~~~~~~~~~~~~l~~lVl 152 (206)
T d1veca_ 132 RILDLIKKGVAKVDHVQMIVL 152 (206)
T ss_dssp HHHHHHHTTCSCCTTCCEEEE
T ss_pred cccccccchhccccccceEEE
Confidence 224567788887774
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=80.18 E-value=0.35 Score=40.56 Aligned_cols=18 Identities=22% Similarity=0.241 Sum_probs=15.4
Q ss_pred CcEEEEecCCCcchhhhh
Q psy9620 151 SNMVGVAQTGSGKTLAYM 168 (453)
Q Consensus 151 ~d~li~a~TGsGKT~~~~ 168 (453)
.++|+.||+|+|||.++.
T Consensus 36 ~~~Ll~GPpG~GKTtla~ 53 (239)
T d1ixsb2 36 EHLLLFGPPGLGKTTLAH 53 (239)
T ss_dssp CCEEEECCTTSCHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 479999999999997654
|