Psyllid ID: psy9637
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 490 | 2.2.26 [Sep-21-2011] | |||||||
| P52209 | 483 | 6-phosphogluconate dehydr | yes | N/A | 0.359 | 0.364 | 0.679 | 3e-69 | |
| P41570 | 481 | 6-phosphogluconate dehydr | N/A | N/A | 0.334 | 0.340 | 0.728 | 6e-68 | |
| Q17761 | 484 | 6-phosphogluconate dehydr | yes | N/A | 0.310 | 0.314 | 0.748 | 7e-67 | |
| P00349 | 483 | 6-phosphogluconate dehydr | N/A | N/A | 0.355 | 0.360 | 0.68 | 9e-67 | |
| Q9DCD0 | 483 | 6-phosphogluconate dehydr | yes | N/A | 0.314 | 0.318 | 0.735 | 1e-65 | |
| P85968 | 483 | 6-phosphogluconate dehydr | yes | N/A | 0.314 | 0.318 | 0.722 | 6e-65 | |
| O60037 | 485 | 6-phosphogluconate dehydr | N/A | N/A | 0.334 | 0.338 | 0.703 | 1e-64 | |
| P41572 | 481 | 6-phosphogluconate dehydr | yes | N/A | 0.373 | 0.380 | 0.641 | 2e-64 | |
| P41573 | 481 | 6-phosphogluconate dehydr | N/A | N/A | 0.373 | 0.380 | 0.635 | 6e-64 | |
| P70718 | 484 | 6-phosphogluconate dehydr | yes | N/A | 0.344 | 0.349 | 0.664 | 3e-62 |
| >sp|P52209|6PGD_HUMAN 6-phosphogluconate dehydrogenase, decarboxylating OS=Homo sapiens GN=PGD PE=1 SV=3 | Back alignment and function desciption |
|---|
Score = 263 bits (671), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 123/181 (67%), Positives = 138/181 (76%), Gaps = 5/181 (2%)
Query: 162 NPSFETSAPTPKPQR-----DKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLN 216
+ + S PQ+ DKK FLE+IR+ALYASKI+SYAQGFML+RQAA GW LN
Sbjct: 295 DERIQASKKLKGPQKFQFDGDKKSFLEDIRKALYASKIISYAQGFMLLRQAATEFGWTLN 354
Query: 217 YGGIALMWRGGCIIRSVFLGNIKAAFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSA 276
YGGIALMWRGGCIIRSVFLG IK AFD+NP L NLLLD FFK A+ Q SWR VS
Sbjct: 355 YGGIALMWRGGCIIRSVFLGKIKDAFDRNPELQNLLLDDFFKSAVENCQDSWRRAVSTGV 414
Query: 277 LLGIPTPAFATALAFYDGYRSKRLPANLLQAQRDYFGAHTYELLAAPGKFVHTNWTGHGG 336
GIP P F TAL+FYDGYR + LPA+L+QAQRDYFGAHTYELLA PG+F+HTNWTGHGG
Sbjct: 415 QAGIPMPCFTTALSFYDGYRHEMLPASLIQAQRDYFGAHTYELLAKPGQFIHTNWTGHGG 474
Query: 337 N 337
Sbjct: 475 T 475
|
Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH. Homo sapiens (taxid: 9606) EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 4EC: 4 |
| >sp|P41570|6PGD_CERCA 6-phosphogluconate dehydrogenase, decarboxylating OS=Ceratitis capitata GN=Pgd PE=2 SV=1 | Back alignment and function description |
|---|
Score = 258 bits (659), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 121/166 (72%), Positives = 138/166 (83%)
Query: 176 RDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGGCIIRSVFL 235
D +FL +I+ ALY SKIVSYAQGFMLMR+AA+ + W LNYGGIALMWRGGCIIRSVFL
Sbjct: 312 EDLPKFLNHIKHALYCSKIVSYAQGFMLMREAAKENNWNLNYGGIALMWRGGCIIRSVFL 371
Query: 236 GNIKAAFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSALLGIPTPAFATALAFYDGY 295
GNIK A+ +NP LSNLLLD FFK AI Q+SWR VV+ + L GIP PA +TAL+FYDGY
Sbjct: 372 GNIKDAYTRNPQLSNLLLDDFFKKAIEVGQNSWRQVVANAFLWGIPVPALSTALSFYDGY 431
Query: 296 RSKRLPANLLQAQRDYFGAHTYELLAAPGKFVHTNWTGHGGNSIAA 341
R+++LPANLLQAQRDYFGAHTYELL A GKFVHTNWTG GGN A+
Sbjct: 432 RTEKLPANLLQAQRDYFGAHTYELLGAEGKFVHTNWTGTGGNVSAS 477
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Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH. Ceratitis capitata (taxid: 7213) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 4 |
| >sp|Q17761|6PGD_CAEEL 6-phosphogluconate dehydrogenase, decarboxylating OS=Caenorhabditis elegans GN=T25B9.9 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 255 bits (651), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 119/159 (74%), Positives = 138/159 (86%)
Query: 3 AKGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEEL 62
A+ DI +IGLAVMGQNLILNMNDHGFTV A+NRT VD FLANEAKGT IIGAHS+EE+
Sbjct: 2 AEADIAVIGLAVMGQNLILNMNDHGFTVCAFNRTVKLVDDFLANEAKGTKIIGAHSIEEM 61
Query: 63 VKNLKKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGL 122
K LK+PRRVMML+KAG+ VD ID +VP LE+GDIIIDGGNSEY D++RRS+ L AKG+
Sbjct: 62 CKKLKRPRRVMMLIKAGTPVDMMIDAIVPHLEEGDIIIDGGNSEYTDSNRRSEQLAAKGI 121
Query: 123 LYVGCGVSGGEDGARYGPSLMPGGNPAAWPALKPIFQKL 161
++VGCGVSGGE+GAR+GPSLMPGGNP AWP LK IFQK+
Sbjct: 122 MFVGCGVSGGEEGARFGPSLMPGGNPKAWPHLKDIFQKI 160
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Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH. Caenorhabditis elegans (taxid: 6239) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 4 |
| >sp|P00349|6PGD_SHEEP 6-phosphogluconate dehydrogenase, decarboxylating OS=Ovis aries GN=PGD PE=1 SV=4 | Back alignment and function description |
|---|
Score = 254 bits (650), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 119/175 (68%), Positives = 135/175 (77%), Gaps = 1/175 (0%)
Query: 159 QKLNPSFETSAPTPKP-QRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNY 217
+++ S + P P + DKK FLE+IR+ALYASKI+SYAQGFML+RQAA GW LNY
Sbjct: 296 ERIQASKKLKGPQNIPFEGDKKSFLEDIRKALYASKIISYAQGFMLLRQAATEFGWTLNY 355
Query: 218 GGIALMWRGGCIIRSVFLGNIKAAFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSAL 277
GGIALMWRGGCIIRSVFLG IK AFD+NP L NLLLD FFK A+ Q SWR +S
Sbjct: 356 GGIALMWRGGCIIRSVFLGKIKDAFDRNPGLQNLLLDDFFKSAVENCQDSWRRAISTGVQ 415
Query: 278 LGIPTPAFATALAFYDGYRSKRLPANLLQAQRDYFGAHTYELLAAPGKFVHTNWT 332
GIP P F TAL+FYDGYR LPANL+QAQRDYFGAHTYELLA PG+F+HTNWT
Sbjct: 416 AGIPMPCFTTALSFYDGYRHAMLPANLIQAQRDYFGAHTYELLAKPGQFIHTNWT 470
|
Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH. Ovis aries (taxid: 9940) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 4 |
| >sp|Q9DCD0|6PGD_MOUSE 6-phosphogluconate dehydrogenase, decarboxylating OS=Mus musculus GN=Pgd PE=2 SV=3 | Back alignment and function description |
|---|
Score = 250 bits (639), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 114/155 (73%), Positives = 127/155 (81%)
Query: 178 KKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGGCIIRSVFLGN 237
KK FLE+IR+ALYASKI+SYAQGFML+RQAA GW LNYGGIALMWRGGCIIRSVFLG
Sbjct: 316 KKSFLEDIRKALYASKIISYAQGFMLLRQAATEFGWTLNYGGIALMWRGGCIIRSVFLGK 375
Query: 238 IKAAFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSALLGIPTPAFATALAFYDGYRS 297
IK AF++NP L NLLLD FFK A+ Q SWR V+S GIP P F TAL+FYDGYR
Sbjct: 376 IKDAFERNPELQNLLLDDFFKSAVDNCQDSWRRVISTGVQAGIPMPCFTTALSFYDGYRH 435
Query: 298 KRLPANLLQAQRDYFGAHTYELLAAPGKFVHTNWT 332
+ LPANL+QAQRDYFGAHTYELL PG+F+HTNWT
Sbjct: 436 EMLPANLIQAQRDYFGAHTYELLTKPGEFIHTNWT 470
|
Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH. Mus musculus (taxid: 10090) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 4 |
| >sp|P85968|6PGD_RAT 6-phosphogluconate dehydrogenase, decarboxylating OS=Rattus norvegicus GN=Pgd PE=1 SV=1 | Back alignment and function description |
|---|
Score = 248 bits (634), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 112/155 (72%), Positives = 128/155 (82%)
Query: 178 KKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGGCIIRSVFLGN 237
K+ FLE++R+ALYASKI+SYAQGFML+RQAA GW LNYGGIALMWRGGCIIRSVFLG
Sbjct: 316 KQAFLEDVRKALYASKIISYAQGFMLLRQAATEFGWTLNYGGIALMWRGGCIIRSVFLGK 375
Query: 238 IKAAFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSALLGIPTPAFATALAFYDGYRS 297
IK AF++NP L NLLLD FFK A+ Q SWR V+S GIP P F TAL+FYDGYR
Sbjct: 376 IKDAFERNPELQNLLLDDFFKSAVDDCQDSWRRVISTGVQAGIPMPCFTTALSFYDGYRH 435
Query: 298 KRLPANLLQAQRDYFGAHTYELLAAPGKFVHTNWT 332
+ LPANL+QAQRDYFGAHTYELL+ PG+F+HTNWT
Sbjct: 436 EMLPANLIQAQRDYFGAHTYELLSKPGEFIHTNWT 470
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Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH. Rattus norvegicus (taxid: 10116) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 4 |
| >sp|O60037|6PGD_CUNEL 6-phosphogluconate dehydrogenase, decarboxylating OS=Cunninghamella elegans GN=6-PGD PE=2 SV=1 | Back alignment and function description |
|---|
Score = 247 bits (631), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 116/165 (70%), Positives = 132/165 (80%)
Query: 177 DKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGGCIIRSVFLG 236
DKK F+ + QALYA+KIVSYAQG+MLMRQAA+ + WKLN GIALMWRGGCIIRSVFLG
Sbjct: 317 DKKTFIAQLGQALYAAKIVSYAQGYMLMRQAAKDYEWKLNNAGIALMWRGGCIIRSVFLG 376
Query: 237 NIKAAFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSALLGIPTPAFATALAFYDGYR 296
I+ A+ KNP L NLL D FFKDA Q +WR V +Q+ L+GIPTPA +TAL FYDG R
Sbjct: 377 KIRDAYTKNPELENLLFDDFFKDATAKAQDAWRNVTAQAVLMGIPTPALSTALNFYDGLR 436
Query: 297 SKRLPANLLQAQRDYFGAHTYELLAAPGKFVHTNWTGHGGNSIAA 341
+ LPANLLQAQRDYFGAHTYELL PGK+VHTNWTG GGN A+
Sbjct: 437 HEILPANLLQAQRDYFGAHTYELLHTPGKWVHTNWTGRGGNVSAS 481
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Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH. Cunninghamella elegans (taxid: 4853) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 4 |
| >sp|P41572|6PGD_DROME 6-phosphogluconate dehydrogenase, decarboxylating OS=Drosophila melanogaster GN=Pgd PE=2 SV=1 | Back alignment and function description |
|---|
Score = 246 bits (629), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 118/184 (64%), Positives = 140/184 (76%), Gaps = 1/184 (0%)
Query: 159 QKLNPSFETSAPTPKPQ-RDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNY 217
+++ S P+ K Q + +FL++I+ ALY +KIVSYAQGFMLMR+AA + W+LNY
Sbjct: 294 ERVQASSVLKGPSTKAQVANLTKFLDDIKHALYCAKIVSYAQGFMLMREAARENKWRLNY 353
Query: 218 GGIALMWRGGCIIRSVFLGNIKAAFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSAL 277
GGIALMWRGGCIIRSVFLGNIK A+ P LSNLLLD FFK AI Q SWR VV+ +
Sbjct: 354 GGIALMWRGGCIIRSVFLGNIKDAYTSQPELSNLLLDDFFKKAIERGQDSWREVVANAFR 413
Query: 278 LGIPTPAFATALAFYDGYRSKRLPANLLQAQRDYFGAHTYELLAAPGKFVHTNWTGHGGN 337
GIP PA +TAL+FYDGYR+ +LPANLLQAQRDYFGAHTYELL G+F HTNWTG GGN
Sbjct: 414 WGIPVPALSTALSFYDGYRTAKLPANLLQAQRDYFGAHTYELLGQEGQFHHTNWTGTGGN 473
Query: 338 SIAA 341
A+
Sbjct: 474 VSAS 477
|
Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH. Drosophila melanogaster (taxid: 7227) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 4 |
| >sp|P41573|6PGD_DROSI 6-phosphogluconate dehydrogenase, decarboxylating OS=Drosophila simulans GN=Pgd PE=3 SV=1 | Back alignment and function description |
|---|
Score = 245 bits (625), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 117/184 (63%), Positives = 140/184 (76%), Gaps = 1/184 (0%)
Query: 159 QKLNPSFETSAPTPKPQ-RDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNY 217
+++ S P+ K + + +FL++I+ ALY +KIVSYAQGFMLMR+AA + W+LNY
Sbjct: 294 ERVQASSVLKGPSTKAEVANLTKFLDDIKHALYCAKIVSYAQGFMLMREAARENKWRLNY 353
Query: 218 GGIALMWRGGCIIRSVFLGNIKAAFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSAL 277
GGIALMWRGGCIIRSVFLGNIK A+ P LSNLLLD FFK AI Q SWR VV+ +
Sbjct: 354 GGIALMWRGGCIIRSVFLGNIKDAYTSQPQLSNLLLDDFFKKAIERGQDSWREVVANAFR 413
Query: 278 LGIPTPAFATALAFYDGYRSKRLPANLLQAQRDYFGAHTYELLAAPGKFVHTNWTGHGGN 337
GIP PA +TAL+FYDGYR+ +LPANLLQAQRDYFGAHTYELL G+F HTNWTG GGN
Sbjct: 414 WGIPVPALSTALSFYDGYRTAKLPANLLQAQRDYFGAHTYELLGQEGQFHHTNWTGTGGN 473
Query: 338 SIAA 341
A+
Sbjct: 474 VSAS 477
|
Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH. Drosophila simulans (taxid: 7240) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 4 |
| >sp|P70718|6PGD_AGGAC 6-phosphogluconate dehydrogenase, decarboxylating OS=Aggregatibacter actinomycetemcomitans GN=gnd PE=3 SV=1 | Back alignment and function description |
|---|
Score = 239 bits (610), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 113/170 (66%), Positives = 135/170 (79%)
Query: 1 MAAKGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLE 60
M+ KGDIG+IGLAVMGQNLILNMNDHGF VVAYNRTT+KVD FL AKGTNIIGA+SLE
Sbjct: 1 MSVKGDIGVIGLAVMGQNLILNMNDHGFKVVAYNRTTSKVDEFLEGAAKGTNIIGAYSLE 60
Query: 61 ELVKNLKKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAK 120
+L L+KPR+VM++V+AG VD FID L+P LE GDIIIDGGNS Y DT+RR AL K
Sbjct: 61 DLANKLEKPRKVMLMVRAGEVVDHFIDALLPHLEAGDIIIDGGNSNYPDTNRRVAALREK 120
Query: 121 GLLYVGCGVSGGEDGARYGPSLMPGGNPAAWPALKPIFQKLNPSFETSAP 170
G+ ++G GVSGGE+GAR+GPS+MPGGN AW +KP+ Q ++ E P
Sbjct: 121 GIRFIGTGVSGGEEGARHGPSIMPGGNEEAWQFVKPVLQAISAKTEQGEP 170
|
Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH. Aggregatibacter actinomycetemcomitans (taxid: 714) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 4 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 490 | ||||||
| 297666494 | 411 | PREDICTED: 6-phosphogluconate dehydrogen | 0.638 | 0.761 | 0.610 | 1e-116 | |
| 348570952 | 1140 | PREDICTED: kinesin-like protein KIF1B-li | 0.689 | 0.296 | 0.506 | 1e-80 | |
| 390352584 | 484 | PREDICTED: 6-phosphogluconate dehydrogen | 0.365 | 0.369 | 0.727 | 3e-74 | |
| 156367416 | 484 | predicted protein [Nematostella vectensi | 0.365 | 0.369 | 0.727 | 6e-73 | |
| 328710078 | 482 | PREDICTED: 6-phosphogluconate dehydrogen | 0.351 | 0.356 | 0.755 | 6e-73 | |
| 291235153 | 484 | PREDICTED: predicted protein-like [Sacco | 0.365 | 0.369 | 0.722 | 2e-72 | |
| 196007278 | 486 | expressed hypothetical protein [Trichopl | 0.336 | 0.339 | 0.763 | 1e-71 | |
| 357609752 | 468 | 6-phosphogluconate dehydrogenase [Danaus | 0.373 | 0.391 | 0.699 | 2e-71 | |
| 156554573 | 482 | PREDICTED: 6-phosphogluconate dehydrogen | 0.371 | 0.377 | 0.710 | 2e-71 | |
| 405976318 | 484 | 6-phosphogluconate dehydrogenase, decarb | 0.353 | 0.357 | 0.724 | 4e-71 |
| >gi|297666494|ref|XP_002811567.1| PREDICTED: 6-phosphogluconate dehydrogenase, decarboxylating [Pongo abelii] | Back alignment and taxonomy information |
|---|
Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust.
Identities = 227/372 (61%), Positives = 258/372 (69%), Gaps = 59/372 (15%)
Query: 3 AKGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEEL 62
A+ DI LIGLAVMGQNLILNMNDHGF V A+NRT +KVD FLANEAKGT ++GAHSL+E+
Sbjct: 54 AQADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVVGAHSLKEM 113
Query: 63 VKNLKKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGL 122
V LKKPRR+++LVKAG AVDDFI+KL RR + L+AKG+
Sbjct: 114 VSKLKKPRRIILLVKAGQAVDDFIEKL----------------------RRCQDLKAKGI 151
Query: 123 LYVGCGVSGGEDGARYGPSLMPGGNPAAWPALKPIFQKLNPSFETSAP------TPK--- 173
L+VG GVSGGE+GARYGPSLMPGGN AWP +K IFQ + T P +P
Sbjct: 152 LFVGSGVSGGEEGARYGPSLMPGGNKEAWPHIKTIFQGIAAKVGTGEPCCDWSRSPHVGE 211
Query: 174 -----------------------PQR-----DKKEFLENIRQALYASKIVSYAQGFMLMR 205
PQ+ DKK FLE+IR+ALYASKI+SYAQGFML+R
Sbjct: 212 AVFARCLSSLKDERIQASKKLKGPQKFQFDGDKKSFLEDIRKALYASKIISYAQGFMLLR 271
Query: 206 QAAEIHGWKLNYGGIALMWRGGCIIRSVFLGNIKAAFDKNPALSNLLLDPFFKDAIHATQ 265
QAA GW LNYGGIALMWRGGCIIRSVFLG IK AFD+NP L NLLLD FFK A+ Q
Sbjct: 272 QAATEFGWTLNYGGIALMWRGGCIIRSVFLGKIKDAFDRNPELQNLLLDDFFKSAVENCQ 331
Query: 266 SSWRAVVSQSALLGIPTPAFATALAFYDGYRSKRLPANLLQAQRDYFGAHTYELLAAPGK 325
SWR VS GIP P F TAL+FYDGYR + LPANL+QAQRDYFGAHTYELLA PG+
Sbjct: 332 DSWRRAVSTGVQAGIPMPCFTTALSFYDGYRHEMLPANLIQAQRDYFGAHTYELLAKPGQ 391
Query: 326 FVHTNWTGHGGN 337
F+HTNWTGHGG
Sbjct: 392 FIHTNWTGHGGT 403
|
Source: Pongo abelii Species: Pongo abelii Genus: Pongo Family: Hominidae Order: Primates Class: Mammalia Phylum: Chordata Superkingdom: Eukaryota |
| >gi|348570952|ref|XP_003471260.1| PREDICTED: kinesin-like protein KIF1B-like [Cavia porcellus] | Back alignment and taxonomy information |
|---|
Score = 306 bits (785), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 185/365 (50%), Positives = 227/365 (62%), Gaps = 27/365 (7%)
Query: 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELV 63
+ D+ LIGLAVMGQNLILNMNDHGF V A+NRT +KVD FLANEAKGT ++GA SLEE+V
Sbjct: 642 RADVALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTRVVGAQSLEEMV 701
Query: 64 KNLKKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLL 123
LKKPRRV++LVKAG AVDDFI+KLVPLL+ GDIIIDGGNSEY+DT RR + L+AKG+L
Sbjct: 702 SKLKKPRRVILLVKAGQAVDDFIEKLVPLLDTGDIIIDGGNSEYRDTTRRCRDLKAKGIL 761
Query: 124 YVGCGVSGGEDGARYGPSLMPGGNPAAWPALKPIFQKLNPSFET----------SAPTPK 173
+VG GVSGGE+GARYGPSLMPGGN AWP +K IFQ ++ T SA TP
Sbjct: 762 FVGSGVSGGEEGARYGPSLMPGGNREAWPHIKTIFQSISAKVGTGEPCCDWASASAATPV 821
Query: 174 PQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGGCIIRSV 233
F++ + + + + + LM+ ++ G A + S
Sbjct: 822 GDEGAGHFVKMVHNGIEYGDMQLICEAYHLMK---DVLGMGHEDMARAFEEWNKTELDS- 877
Query: 234 FLGNIKAAFDKNPALSNLLLDPFFKDAI-HATQSSWRAVVSQSAL-LGIPTPAF----AT 287
FL I A+ K L P +D+ W A+ SAL G+P
Sbjct: 878 FLIEITASILKFKDSDGQHLLPKIRDSAGQKGTGKWTAI---SALEYGVPVTLIXXXXXX 934
Query: 288 ALAFYDGYRSKRLPANLLQAQRDYFGAHTYELLAAPGKFVHTNWTGH----GGNSIAAKV 343
FYDGYR + LPANL+QAQRDYFGAHTYELLA PG+F+HTNWTGH GG ++
Sbjct: 935 XXXFYDGYRHEMLPANLIQAQRDYFGAHTYELLAKPGQFIHTNWTGHAHSRGGKVRPRRL 994
Query: 344 GSEPC 348
S C
Sbjct: 995 PSSAC 999
|
Source: Cavia porcellus Species: Cavia porcellus Genus: Cavia Family: Caviidae Order: Rodentia Class: Mammalia Phylum: Chordata Superkingdom: Eukaryota |
| >gi|390352584|ref|XP_003727927.1| PREDICTED: 6-phosphogluconate dehydrogenase, decarboxylating isoform 1 [Strongylocentrotus purpuratus] gi|390352586|ref|XP_003727928.1| PREDICTED: 6-phosphogluconate dehydrogenase, decarboxylating isoform 2 [Strongylocentrotus purpuratus] | Back alignment and taxonomy information |
|---|
Score = 285 bits (730), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 131/180 (72%), Positives = 154/180 (85%), Gaps = 1/180 (0%)
Query: 159 QKLNPSFETSAP-TPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNY 217
+++ S + P P DKK+F+E+IRQALYASKIVSYAQGFML+R+AA+ W LNY
Sbjct: 297 ERVEASKQLKGPDAPAFSGDKKQFIEDIRQALYASKIVSYAQGFMLLREAAKQFNWNLNY 356
Query: 218 GGIALMWRGGCIIRSVFLGNIKAAFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSAL 277
GGIALMWRGGCIIRS FLGNIKAAF+K+P L+NLLLD FFK+AIH Q+SWR V++ + +
Sbjct: 357 GGIALMWRGGCIIRSAFLGNIKAAFEKDPNLTNLLLDDFFKNAIHKCQASWRKVLAAAVM 416
Query: 278 LGIPTPAFATALAFYDGYRSKRLPANLLQAQRDYFGAHTYELLAAPGKFVHTNWTGHGGN 337
G+PTPAF+TALAFYDGYRS RLPANL+QAQRDYFGAHTYELL+APGKFVHTNWTGHGGN
Sbjct: 417 QGVPTPAFSTALAFYDGYRSARLPANLIQAQRDYFGAHTYELLSAPGKFVHTNWTGHGGN 476
|
Source: Strongylocentrotus purpuratus Species: Strongylocentrotus purpuratus Genus: Strongylocentrotus Family: Strongylocentrotidae Order: Echinoida Class: Echinoidea Phylum: Echinodermata Superkingdom: Eukaryota |
| >gi|156367416|ref|XP_001627413.1| predicted protein [Nematostella vectensis] gi|156214322|gb|EDO35313.1| predicted protein [Nematostella vectensis] | Back alignment and taxonomy information |
|---|
Score = 281 bits (719), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 131/180 (72%), Positives = 150/180 (83%), Gaps = 1/180 (0%)
Query: 159 QKLNPSFETSAP-TPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNY 217
++++ S P + K DKKEF+E+IR+ALYASKIVSYAQGFMLMR+AA++ WKLNY
Sbjct: 297 ERVHASTHLKGPASTKFTGDKKEFVEHIRKALYASKIVSYAQGFMLMREAAKVFNWKLNY 356
Query: 218 GGIALMWRGGCIIRSVFLGNIKAAFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSAL 277
GGIALMWRGGCIIRS FLGNIK AF+KNP L NLLLD FFKDAIH Q SWR ++ +
Sbjct: 357 GGIALMWRGGCIIRSRFLGNIKDAFNKNPNLDNLLLDDFFKDAIHKCQDSWRKTIATAVT 416
Query: 278 LGIPTPAFATALAFYDGYRSKRLPANLLQAQRDYFGAHTYELLAAPGKFVHTNWTGHGGN 337
LGIPTPAF+TALAFYDGYRS RLPANL+QAQRDYFGAHTYELL+ PG F+HTNWTG GGN
Sbjct: 417 LGIPTPAFSTALAFYDGYRSARLPANLIQAQRDYFGAHTYELLSNPGHFIHTNWTGKGGN 476
|
Source: Nematostella vectensis Species: Nematostella vectensis Genus: Nematostella Family: Edwardsiidae Order: Actiniaria Class: Anthozoa Phylum: Cnidaria Superkingdom: Eukaryota |
| >gi|328710078|ref|XP_001950254.2| PREDICTED: 6-phosphogluconate dehydrogenase, decarboxylating-like [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 281 bits (718), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 130/172 (75%), Positives = 148/172 (86%)
Query: 170 PTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGGCI 229
PT DK+ FL++I +ALYASKIVSYAQGFMLMR+AA+IHGW LNYGGIALMWRGGCI
Sbjct: 307 PTEVFNGDKQAFLKDIGKALYASKIVSYAQGFMLMREAAKIHGWNLNYGGIALMWRGGCI 366
Query: 230 IRSVFLGNIKAAFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSALLGIPTPAFATAL 289
IRS FLG IK AF+ +P L NLLLDPFFKDA+H +Q +WR VV+ SA+LGIPTPAF+TAL
Sbjct: 367 IRSAFLGKIKQAFELDPNLKNLLLDPFFKDAVHNSQVAWRKVVASSAMLGIPTPAFSTAL 426
Query: 290 AFYDGYRSKRLPANLLQAQRDYFGAHTYELLAAPGKFVHTNWTGHGGNSIAA 341
AFYD YRS RLPANLLQAQRDYFGAHTYELL APGK++HTNWTG GG+ A+
Sbjct: 427 AFYDSYRSARLPANLLQAQRDYFGAHTYELLTAPGKYIHTNWTGTGGDVSAS 478
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|291235153|ref|XP_002737508.1| PREDICTED: predicted protein-like [Saccoglossus kowalevskii] | Back alignment and taxonomy information |
|---|
Score = 280 bits (715), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 130/180 (72%), Positives = 151/180 (83%), Gaps = 1/180 (0%)
Query: 159 QKLNPSFETSAPTP-KPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNY 217
+++ S + PT K DKK+F+ENIRQALYASKIVSYAQGFML+R+AA++ WKLNY
Sbjct: 297 ERVEASKQLKGPTTTKYAGDKKQFIENIRQALYASKIVSYAQGFMLLREAAKVFNWKLNY 356
Query: 218 GGIALMWRGGCIIRSVFLGNIKAAFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSAL 277
GGIALMWRGGCIIRS FLG IK AF KNP ++NL+LD FF AI +Q+SWR VV+ +
Sbjct: 357 GGIALMWRGGCIIRSAFLGKIKQAFVKNPDITNLILDDFFHKAIDNSQNSWRHVVATAVQ 416
Query: 278 LGIPTPAFATALAFYDGYRSKRLPANLLQAQRDYFGAHTYELLAAPGKFVHTNWTGHGGN 337
LGIPTPAF+TALAFYDGYRS RLPANL+QAQRDYFGAHTYELLA PGK++HTNWTGHGGN
Sbjct: 417 LGIPTPAFSTALAFYDGYRSARLPANLIQAQRDYFGAHTYELLADPGKYIHTNWTGHGGN 476
|
Source: Saccoglossus kowalevskii Species: Saccoglossus kowalevskii Genus: Saccoglossus Family: Harrimaniidae Order: Class: Enteropneusta Phylum: Hemichordata Superkingdom: Eukaryota |
| >gi|196007278|ref|XP_002113505.1| expressed hypothetical protein [Trichoplax adhaerens] gi|190583909|gb|EDV23979.1| expressed hypothetical protein [Trichoplax adhaerens] | Back alignment and taxonomy information |
|---|
Score = 276 bits (707), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 126/165 (76%), Positives = 144/165 (87%)
Query: 177 DKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGGCIIRSVFLG 236
DKKEF+ENIR+ALYASKIVSYAQGFML+R+AA+ W LNYG IALMWRGGCIIRSVFLG
Sbjct: 318 DKKEFIENIRKALYASKIVSYAQGFMLLREAAKQFNWTLNYGSIALMWRGGCIIRSVFLG 377
Query: 237 NIKAAFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSALLGIPTPAFATALAFYDGYR 296
NIK+AFDKNP L +LLLD FF AI + Q SWR VV+ + LLGIPTP+F+ ALAFYDGYR
Sbjct: 378 NIKSAFDKNPNLESLLLDDFFHSAIDSCQESWRKVVANAVLLGIPTPSFSCALAFYDGYR 437
Query: 297 SKRLPANLLQAQRDYFGAHTYELLAAPGKFVHTNWTGHGGNSIAA 341
S RLPANL+QAQRDYFGAHTYELL+ PG+F+HTNWTGHGG+ A+
Sbjct: 438 SSRLPANLIQAQRDYFGAHTYELLSNPGQFIHTNWTGHGGSVSAS 482
|
Source: Trichoplax adhaerens Species: Trichoplax adhaerens Genus: Trichoplax Family: Order: Class: Phylum: Placozoa Superkingdom: Eukaryota |
| >gi|357609752|gb|EHJ66637.1| 6-phosphogluconate dehydrogenase [Danaus plexippus] | Back alignment and taxonomy information |
|---|
Score = 276 bits (706), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 128/183 (69%), Positives = 150/183 (81%)
Query: 159 QKLNPSFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYG 218
+++ S + K DKK+FLE++R+ALYASKI+SYAQGFML+R+AA++H W LNYG
Sbjct: 282 ERVTASKSLPGSSIKFSGDKKQFLEHLRKALYASKIISYAQGFMLLREAAKVHKWNLNYG 341
Query: 219 GIALMWRGGCIIRSVFLGNIKAAFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSALL 278
IALMWRGGCIIRSVFLGNIK AF KNP LSNLLLDP+F+D I +Q S R VVS++ALL
Sbjct: 342 SIALMWRGGCIIRSVFLGNIKDAFKKNPQLSNLLLDPYFRDRISVSQQSLRQVVSEAALL 401
Query: 279 GIPTPAFATALAFYDGYRSKRLPANLLQAQRDYFGAHTYELLAAPGKFVHTNWTGHGGNS 338
G+P PAF ALAFYDGYRS LPANLLQAQRDYFGAHTYELL+ PG FVHTNWTGHGG+
Sbjct: 402 GVPAPAFGAALAFYDGYRSDMLPANLLQAQRDYFGAHTYELLSKPGNFVHTNWTGHGGSV 461
Query: 339 IAA 341
A+
Sbjct: 462 SAS 464
|
Source: Danaus plexippus Species: Danaus plexippus Genus: Danaus Family: Nymphalidae Order: Lepidoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|156554573|ref|XP_001600933.1| PREDICTED: 6-phosphogluconate dehydrogenase, decarboxylating-like [Nasonia vitripennis] | Back alignment and taxonomy information |
|---|
Score = 276 bits (705), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 130/183 (71%), Positives = 148/183 (80%)
Query: 159 QKLNPSFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYG 218
+++ S P K Q DKK+FLE++R+ALYASKI+SYAQGFML+R+AA+IH W LNYG
Sbjct: 296 ERIEASSVLLGPNTKYQADKKQFLEHLRKALYASKIISYAQGFMLLREAAKIHNWNLNYG 355
Query: 219 GIALMWRGGCIIRSVFLGNIKAAFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSALL 278
GIALMWRGGCIIRS FLGNIK AFDKNP L+NLLLD FF A+ Q+S R VS + L
Sbjct: 356 GIALMWRGGCIIRSAFLGNIKLAFDKNPKLTNLLLDDFFAKAMKDCQASIRVAVSTAVNL 415
Query: 279 GIPTPAFATALAFYDGYRSKRLPANLLQAQRDYFGAHTYELLAAPGKFVHTNWTGHGGNS 338
GIPTPA +TALAFYDGYR+ RLPANLLQAQRDYFGAHTYELL GKFVHTNWTGHGGN
Sbjct: 416 GIPTPALSTALAFYDGYRAPRLPANLLQAQRDYFGAHTYELLGQEGKFVHTNWTGHGGNV 475
Query: 339 IAA 341
A+
Sbjct: 476 SAS 478
|
Source: Nasonia vitripennis Species: Nasonia vitripennis Genus: Nasonia Family: Pteromalidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|405976318|gb|EKC40830.1| 6-phosphogluconate dehydrogenase, decarboxylating [Crassostrea gigas] | Back alignment and taxonomy information |
|---|
Score = 275 bits (703), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 129/178 (72%), Positives = 144/178 (80%), Gaps = 5/178 (2%)
Query: 165 FETSAPTPKPQR-----DKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGG 219
E S P P + DKK+F+ +I+ ALYASKIVSYAQGFMLMR+AA+ GWKLN+GG
Sbjct: 299 IEASKQIPGPSKTKYEGDKKQFVNDIKYALYASKIVSYAQGFMLMREAAKDLGWKLNFGG 358
Query: 220 IALMWRGGCIIRSVFLGNIKAAFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSALLG 279
IALMWRGGCIIRSVFLGNIK AFDKN LSNLLLD FFK + Q SWR VV+ + LG
Sbjct: 359 IALMWRGGCIIRSVFLGNIKQAFDKNQNLSNLLLDDFFKKEVQKCQDSWRRVVASAVTLG 418
Query: 280 IPTPAFATALAFYDGYRSKRLPANLLQAQRDYFGAHTYELLAAPGKFVHTNWTGHGGN 337
IPTPAF+TALAF+DGYRS RLPANL+QAQRDYFGAHTYELL PG F+HTNWTGHGGN
Sbjct: 419 IPTPAFSTALAFFDGYRSARLPANLIQAQRDYFGAHTYELLDKPGNFIHTNWTGHGGN 476
|
Source: Crassostrea gigas Species: Crassostrea gigas Genus: Crassostrea Family: Ostreidae Order: Ostreoida Class: Bivalvia Phylum: Mollusca Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 490 | ||||||
| UNIPROTKB|Q3ZCI4 | 483 | PGD "6-phosphogluconate dehydr | 0.365 | 0.370 | 0.683 | 2.6e-130 | |
| UNIPROTKB|P00349 | 483 | PGD "6-phosphogluconate dehydr | 0.365 | 0.370 | 0.683 | 8.8e-130 | |
| UNIPROTKB|Q5ZIZ0 | 483 | PGD "6-phosphogluconate dehydr | 0.328 | 0.333 | 0.745 | 1.1e-129 | |
| UNIPROTKB|F1RIF8 | 481 | PGD "6-phosphogluconate dehydr | 0.328 | 0.334 | 0.751 | 2.3e-129 | |
| UNIPROTKB|P52209 | 483 | PGD "6-phosphogluconate dehydr | 0.326 | 0.331 | 0.75 | 7.9e-129 | |
| UNIPROTKB|F1PE09 | 483 | PGD "6-phosphogluconate dehydr | 0.328 | 0.333 | 0.739 | 2.7e-128 | |
| ZFIN|ZDB-GENE-040426-2807 | 511 | pgd "phosphogluconate hydrogen | 0.363 | 0.348 | 0.675 | 3.4e-126 | |
| MGI|MGI:97553 | 483 | Pgd "phosphogluconate dehydrog | 0.469 | 0.476 | 0.556 | 2e-63 | |
| UNIPROTKB|B4DQJ8 | 470 | PGD "6-phosphogluconate dehydr | 0.326 | 0.340 | 0.75 | 1.7e-124 | |
| RGD|1583832 | 483 | Pgd "phosphogluconate dehydrog | 0.469 | 0.476 | 0.548 | 8.8e-63 |
| UNIPROTKB|Q3ZCI4 PGD "6-phosphogluconate dehydrogenase, decarboxylating" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 663 (238.4 bits), Expect = 2.6e-130, Sum P(2) = 2.6e-130
Identities = 123/180 (68%), Positives = 141/180 (78%)
Query: 159 QKLNPSFETSAPTPKP-QRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNY 217
+++ S + P P + DKK FLE+IR+ALYASKI+SYAQGFML+RQAA GW LNY
Sbjct: 296 ERIQASKKLKGPQNVPFEGDKKSFLEDIRKALYASKIISYAQGFMLLRQAATEFGWTLNY 355
Query: 218 GGIALMWRGGCIIRSVFLGNIKAAFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSAL 277
GGIALMWRGGCIIRSVFLG IK AFD+NP L NLLLD FFK A+ Q SWR +S
Sbjct: 356 GGIALMWRGGCIIRSVFLGKIKDAFDRNPGLQNLLLDDFFKSAVENCQDSWRRAISTGVQ 415
Query: 278 LGIPTPAFATALAFYDGYRSKRLPANLLQAQRDYFGAHTYELLAAPGKFVHTNWTGHGGN 337
GIP P F TAL+FYDGYR + LPANL+QAQRDYFGAHTYELLA PG+F+HTNWTGHGG+
Sbjct: 416 AGIPMPCFTTALSFYDGYRHEMLPANLIQAQRDYFGAHTYELLAKPGQFIHTNWTGHGGS 475
|
|
| UNIPROTKB|P00349 PGD "6-phosphogluconate dehydrogenase, decarboxylating" [Ovis aries (taxid:9940)] | Back alignment and assigned GO terms |
|---|
Score = 660 (237.4 bits), Expect = 8.8e-130, Sum P(2) = 8.8e-130
Identities = 123/180 (68%), Positives = 140/180 (77%)
Query: 159 QKLNPSFETSAPTPKP-QRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNY 217
+++ S + P P + DKK FLE+IR+ALYASKI+SYAQGFML+RQAA GW LNY
Sbjct: 296 ERIQASKKLKGPQNIPFEGDKKSFLEDIRKALYASKIISYAQGFMLLRQAATEFGWTLNY 355
Query: 218 GGIALMWRGGCIIRSVFLGNIKAAFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSAL 277
GGIALMWRGGCIIRSVFLG IK AFD+NP L NLLLD FFK A+ Q SWR +S
Sbjct: 356 GGIALMWRGGCIIRSVFLGKIKDAFDRNPGLQNLLLDDFFKSAVENCQDSWRRAISTGVQ 415
Query: 278 LGIPTPAFATALAFYDGYRSKRLPANLLQAQRDYFGAHTYELLAAPGKFVHTNWTGHGGN 337
GIP P F TAL+FYDGYR LPANL+QAQRDYFGAHTYELLA PG+F+HTNWTGHGG+
Sbjct: 416 AGIPMPCFTTALSFYDGYRHAMLPANLIQAQRDYFGAHTYELLAKPGQFIHTNWTGHGGS 475
|
|
| UNIPROTKB|Q5ZIZ0 PGD "6-phosphogluconate dehydrogenase, decarboxylating" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 650 (233.9 bits), Expect = 1.1e-129, Sum P(2) = 1.1e-129
Identities = 120/161 (74%), Positives = 134/161 (83%)
Query: 177 DKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGGCIIRSVFLG 236
+KK FLE+IR+ALYASKI+SYAQGFML+RQAA+ GW LNYGGIALMWRGGCIIRSVFLG
Sbjct: 315 NKKAFLEDIRKALYASKIISYAQGFMLLRQAAKEFGWTLNYGGIALMWRGGCIIRSVFLG 374
Query: 237 NIKAAFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSALLGIPTPAFATALAFYDGYR 296
IK AFD+NP L NLLLD FFK A+ Q SWR V+S GIP P F TAL+FYDGYR
Sbjct: 375 KIKDAFDRNPELQNLLLDDFFKTAVEKCQDSWRHVISTGVQHGIPMPCFTTALSFYDGYR 434
Query: 297 SKRLPANLLQAQRDYFGAHTYELLAAPGKFVHTNWTGHGGN 337
+ LPANL+QAQRDYFGAHTYELL+ PG F+HTNWTGHGGN
Sbjct: 435 HEVLPANLIQAQRDYFGAHTYELLSKPGVFIHTNWTGHGGN 475
|
|
| UNIPROTKB|F1RIF8 PGD "6-phosphogluconate dehydrogenase, decarboxylating" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 654 (235.3 bits), Expect = 2.3e-129, Sum P(2) = 2.3e-129
Identities = 121/161 (75%), Positives = 131/161 (81%)
Query: 177 DKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGGCIIRSVFLG 236
DKK FLE+IR+ALYASKI+SY QGFML+RQAA GW LNYGGIALMWRGGCIIRSVFLG
Sbjct: 313 DKKSFLEDIRKALYASKIISYTQGFMLLRQAAAEFGWSLNYGGIALMWRGGCIIRSVFLG 372
Query: 237 NIKAAFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSALLGIPTPAFATALAFYDGYR 296
IK AFD+NP L NLLLD FFK A+ Q SWR VS GIP P F TAL+FYDGYR
Sbjct: 373 KIKDAFDRNPGLQNLLLDDFFKSAVEDCQDSWRRAVSTGVQTGIPMPCFTTALSFYDGYR 432
Query: 297 SKRLPANLLQAQRDYFGAHTYELLAAPGKFVHTNWTGHGGN 337
+ LPANL+QAQRDYFGAHTYELLA PG FVHTNWTGHGG+
Sbjct: 433 HEMLPANLIQAQRDYFGAHTYELLAKPGHFVHTNWTGHGGS 473
|
|
| UNIPROTKB|P52209 PGD "6-phosphogluconate dehydrogenase, decarboxylating" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 651 (234.2 bits), Expect = 7.9e-129, Sum P(2) = 7.9e-129
Identities = 120/160 (75%), Positives = 132/160 (82%)
Query: 177 DKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGGCIIRSVFLG 236
DKK FLE+IR+ALYASKI+SYAQGFML+RQAA GW LNYGGIALMWRGGCIIRSVFLG
Sbjct: 315 DKKSFLEDIRKALYASKIISYAQGFMLLRQAATEFGWTLNYGGIALMWRGGCIIRSVFLG 374
Query: 237 NIKAAFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSALLGIPTPAFATALAFYDGYR 296
IK AFD+NP L NLLLD FFK A+ Q SWR VS GIP P F TAL+FYDGYR
Sbjct: 375 KIKDAFDRNPELQNLLLDDFFKSAVENCQDSWRRAVSTGVQAGIPMPCFTTALSFYDGYR 434
Query: 297 SKRLPANLLQAQRDYFGAHTYELLAAPGKFVHTNWTGHGG 336
+ LPA+L+QAQRDYFGAHTYELLA PG+F+HTNWTGHGG
Sbjct: 435 HEMLPASLIQAQRDYFGAHTYELLAKPGQFIHTNWTGHGG 474
|
|
| UNIPROTKB|F1PE09 PGD "6-phosphogluconate dehydrogenase, decarboxylating" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 649 (233.5 bits), Expect = 2.7e-128, Sum P(2) = 2.7e-128
Identities = 119/161 (73%), Positives = 132/161 (81%)
Query: 177 DKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGGCIIRSVFLG 236
DKK FLE+IR+ALYASKI+SYAQGFML+RQAA GW LNYG IALMWRGGCIIRSVFLG
Sbjct: 315 DKKAFLEDIRKALYASKIISYAQGFMLLRQAATEFGWTLNYGAIALMWRGGCIIRSVFLG 374
Query: 237 NIKAAFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSALLGIPTPAFATALAFYDGYR 296
IK AFD+NP L NLLLD FFK A+ Q SWR VS G+P P F TAL+FYDGYR
Sbjct: 375 KIKDAFDRNPQLQNLLLDDFFKSAVENCQDSWRRAVSTGVQAGVPMPCFTTALSFYDGYR 434
Query: 297 SKRLPANLLQAQRDYFGAHTYELLAAPGKFVHTNWTGHGGN 337
+ LPANL+QAQRDYFGAHTYELLA PG+F+HTNWTGHGG+
Sbjct: 435 HEMLPANLIQAQRDYFGAHTYELLAKPGQFIHTNWTGHGGS 475
|
|
| ZFIN|ZDB-GENE-040426-2807 pgd "phosphogluconate hydrogenase" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 631 (227.2 bits), Expect = 3.4e-126, Sum P(2) = 3.4e-126
Identities = 121/179 (67%), Positives = 138/179 (77%)
Query: 159 QKLNPSFETSAPTP-KPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNY 217
+++ S S P K +K +FLE+IR+ALYASKI+SYAQGFML+RQAA GW LNY
Sbjct: 324 ERVQASKSLSGPQGVKFTGNKAQFLEDIRKALYASKIISYAQGFMLLRQAALEFGWSLNY 383
Query: 218 GGIALMWRGGCIIRSVFLGNIKAAFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSAL 277
G IALMWRGGCIIRSVFLG IK AFD+NP L +LLLD FF A+ Q SWR VVS
Sbjct: 384 GAIALMWRGGCIIRSVFLGKIKEAFDRNPELQSLLLDSFFSKAVQDCQDSWRRVVSTGVQ 443
Query: 278 LGIPTPAFATALAFYDGYRSKRLPANLLQAQRDYFGAHTYELLAAPGKFVHTNWTGHGG 336
GIP P+F TAL+FYDGYR + LPANLLQAQRDYFGAHTYELL+ PG F+HTNWTGHGG
Sbjct: 444 QGIPMPSFTTALSFYDGYRHEMLPANLLQAQRDYFGAHTYELLSNPGTFIHTNWTGHGG 502
|
|
| MGI|MGI:97553 Pgd "phosphogluconate dehydrogenase" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 647 (232.8 bits), Expect = 2.0e-63, P = 2.0e-63
Identities = 132/237 (55%), Positives = 159/237 (67%)
Query: 106 EYQDTDRRS---KALEAKGLLYVGCGVSGGEDGARYGPSLMPGGNPAAWPALKPIFQ-KL 161
+Y+DTD + K ++ G G G YG + G L + + ++
Sbjct: 241 KYRDTDGKELLPKIRDSAG--QKGTGKWTAISALEYGMPVTLIGEAVFARCLSSLKEERV 298
Query: 162 NPSFETSAP-TPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGI 220
S + P + + KK FLE+IR+ALYASKI+SYAQGFML+RQAA GW LNYGGI
Sbjct: 299 QASQKLKGPKVVQLEGSKKSFLEDIRKALYASKIISYAQGFMLLRQAATEFGWTLNYGGI 358
Query: 221 ALMWRGGCIIRSVFLGNIKAAFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSALLGI 280
ALMWRGGCIIRSVFLG IK AF++NP L NLLLD FFK A+ Q SWR V+S GI
Sbjct: 359 ALMWRGGCIIRSVFLGKIKDAFERNPELQNLLLDDFFKSAVDNCQDSWRRVISTGVQAGI 418
Query: 281 PTPAFATALAFYDGYRSKRLPANLLQAQRDYFGAHTYELLAAPGKFVHTNWTGHGGN 337
P P F TAL+FYDGYR + LPANL+QAQRDYFGAHTYELL PG+F+HTNWTGHGG+
Sbjct: 419 PMPCFTTALSFYDGYRHEMLPANLIQAQRDYFGAHTYELLTKPGEFIHTNWTGHGGS 475
|
|
| UNIPROTKB|B4DQJ8 PGD "6-phosphogluconate dehydrogenase, decarboxylating" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 651 (234.2 bits), Expect = 1.7e-124, Sum P(2) = 1.7e-124
Identities = 120/160 (75%), Positives = 132/160 (82%)
Query: 177 DKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGGCIIRSVFLG 236
DKK FLE+IR+ALYASKI+SYAQGFML+RQAA GW LNYGGIALMWRGGCIIRSVFLG
Sbjct: 302 DKKSFLEDIRKALYASKIISYAQGFMLLRQAATEFGWTLNYGGIALMWRGGCIIRSVFLG 361
Query: 237 NIKAAFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSALLGIPTPAFATALAFYDGYR 296
IK AFD+NP L NLLLD FFK A+ Q SWR VS GIP P F TAL+FYDGYR
Sbjct: 362 KIKDAFDRNPELQNLLLDDFFKSAVENCQDSWRRAVSTGVQAGIPMPCFTTALSFYDGYR 421
Query: 297 SKRLPANLLQAQRDYFGAHTYELLAAPGKFVHTNWTGHGG 336
+ LPA+L+QAQRDYFGAHTYELLA PG+F+HTNWTGHGG
Sbjct: 422 HEMLPASLIQAQRDYFGAHTYELLAKPGQFIHTNWTGHGG 461
|
|
| RGD|1583832 Pgd "phosphogluconate dehydrogenase" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 641 (230.7 bits), Expect = 8.8e-63, P = 8.8e-63
Identities = 130/237 (54%), Positives = 160/237 (67%)
Query: 106 EYQDTDRRS---KALEAKGLLYVGCGVSGGEDGARYGPSLMPGGNPAAWPALKPIFQ-KL 161
++QDTD + K ++ G G G YG + G L + + ++
Sbjct: 241 KFQDTDGKELLPKIRDSAG--QKGTGKWTAISALEYGMPVTLIGEAVFARCLSSLKEERV 298
Query: 162 NPSFETSAPTP-KPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGI 220
S + P + + K+ FLE++R+ALYASKI+SYAQGFML+RQAA GW LNYGGI
Sbjct: 299 QASRKLKGPKMVQLEGSKQAFLEDVRKALYASKIISYAQGFMLLRQAATEFGWTLNYGGI 358
Query: 221 ALMWRGGCIIRSVFLGNIKAAFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSALLGI 280
ALMWRGGCIIRSVFLG IK AF++NP L NLLLD FFK A+ Q SWR V+S GI
Sbjct: 359 ALMWRGGCIIRSVFLGKIKDAFERNPELQNLLLDDFFKSAVDDCQDSWRRVISTGVQAGI 418
Query: 281 PTPAFATALAFYDGYRSKRLPANLLQAQRDYFGAHTYELLAAPGKFVHTNWTGHGGN 337
P P F TAL+FYDGYR + LPANL+QAQRDYFGAHTYELL+ PG+F+HTNWTGHGG+
Sbjct: 419 PMPCFTTALSFYDGYRHEMLPANLIQAQRDYFGAHTYELLSKPGEFIHTNWTGHGGS 475
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| O83351 | 6PGD_TREPA | 1, ., 1, ., 1, ., 4, 4 | 0.5049 | 0.4122 | 0.4139 | yes | N/A |
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 1.1.1 | 0.766 |
| 4th Layer | 1.1.1.44 | 0.824 |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 490 | |||
| pfam00393 | 290 | pfam00393, 6PGD, 6-phosphogluconate dehydrogenase, | 3e-99 | |
| PRK09287 | 459 | PRK09287, PRK09287, 6-phosphogluconate dehydrogena | 5e-98 | |
| PRK09287 | 459 | PRK09287, PRK09287, 6-phosphogluconate dehydrogena | 4e-94 | |
| COG0362 | 473 | COG0362, Gnd, 6-phosphogluconate dehydrogenase [Ca | 3e-92 | |
| COG0362 | 473 | COG0362, Gnd, 6-phosphogluconate dehydrogenase [Ca | 5e-92 | |
| COG0362 | 473 | COG0362, Gnd, 6-phosphogluconate dehydrogenase [Ca | 2e-91 | |
| TIGR00873 | 467 | TIGR00873, gnd, 6-phosphogluconate dehydrogenase ( | 1e-89 | |
| PRK09287 | 459 | PRK09287, PRK09287, 6-phosphogluconate dehydrogena | 3e-88 | |
| TIGR00873 | 467 | TIGR00873, gnd, 6-phosphogluconate dehydrogenase ( | 3e-87 | |
| TIGR00873 | 467 | TIGR00873, gnd, 6-phosphogluconate dehydrogenase ( | 6e-87 | |
| pfam00393 | 290 | pfam00393, 6PGD, 6-phosphogluconate dehydrogenase, | 2e-85 | |
| PTZ00142 | 470 | PTZ00142, PTZ00142, 6-phosphogluconate dehydrogena | 1e-82 | |
| PTZ00142 | 470 | PTZ00142, PTZ00142, 6-phosphogluconate dehydrogena | 4e-80 | |
| PTZ00142 | 470 | PTZ00142, PTZ00142, 6-phosphogluconate dehydrogena | 3e-73 | |
| PRK09599 | 301 | PRK09599, PRK09599, 6-phosphogluconate dehydrogena | 4e-66 | |
| PLN02350 | 493 | PLN02350, PLN02350, phosphogluconate dehydrogenase | 5e-65 | |
| PLN02350 | 493 | PLN02350, PLN02350, phosphogluconate dehydrogenase | 9e-64 | |
| pfam03446 | 163 | pfam03446, NAD_binding_2, NAD binding domain of 6- | 3e-63 | |
| PLN02350 | 493 | PLN02350, PLN02350, phosphogluconate dehydrogenase | 1e-55 | |
| COG1023 | 300 | COG1023, Gnd, Predicted 6-phosphogluconate dehydro | 1e-55 | |
| PRK12490 | 299 | PRK12490, PRK12490, 6-phosphogluconate dehydrogena | 8e-50 | |
| TIGR00872 | 298 | TIGR00872, gnd_rel, 6-phosphogluconate dehydrogena | 2e-44 | |
| PRK09599 | 301 | PRK09599, PRK09599, 6-phosphogluconate dehydrogena | 4e-23 | |
| COG1023 | 300 | COG1023, Gnd, Predicted 6-phosphogluconate dehydro | 4e-22 | |
| PRK12490 | 299 | PRK12490, PRK12490, 6-phosphogluconate dehydrogena | 2e-20 | |
| TIGR00872 | 298 | TIGR00872, gnd_rel, 6-phosphogluconate dehydrogena | 9e-18 | |
| COG2084 | 286 | COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase | 6e-17 | |
| TIGR01505 | 291 | TIGR01505, tartro_sem_red, 2-hydroxy-3-oxopropiona | 5e-09 | |
| PRK11559 | 296 | PRK11559, garR, tartronate semialdehyde reductase; | 8e-08 | |
| TIGR01692 | 288 | TIGR01692, HIBADH, 3-hydroxyisobutyrate dehydrogen | 2e-05 | |
| PRK15059 | 292 | PRK15059, PRK15059, tartronate semialdehyde reduct | 7e-05 |
| >gnl|CDD|215895 pfam00393, 6PGD, 6-phosphogluconate dehydrogenase, C-terminal domain | Back alignment and domain information |
|---|
Score = 300 bits (770), Expect = 3e-99
Identities = 103/161 (63%), Positives = 125/161 (77%), Gaps = 1/161 (0%)
Query: 172 PKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGGCIIR 231
K + DK EF+E++RQALYASKIVSYAQGFML+R A++ +GW LN G IA +WRGGCIIR
Sbjct: 131 AKDKGDKAEFIEDVRQALYASKIVSYAQGFMLLRAASKEYGWNLNLGEIARIWRGGCIIR 190
Query: 232 SVFLGNIKAAFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSALLGIPTPAFATALAF 291
+ FL IK A++KNP L NLLLDP+FK I Q SWR VV+ + GIP PAF++AL++
Sbjct: 191 AQFLDKIKDAYEKNPDLPNLLLDPYFKKEIKEYQQSWRRVVAIAVEAGIPVPAFSSALSY 250
Query: 292 YDGYRSKRLPANLLQAQRDYFGAHTYELLAAPGKFVHTNWT 332
YD YR++RLPANL+QAQRDYFGAHTYE G F HTNWT
Sbjct: 251 YDSYRTERLPANLIQAQRDYFGAHTYERTDKEGFF-HTNWT 290
|
This family represents the C-terminal all-alpha domain of 6-phosphogluconate dehydrogenase. The domain contains two structural repeats of 5 helices each. Length = 290 |
| >gnl|CDD|236453 PRK09287, PRK09287, 6-phosphogluconate dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 302 bits (777), Expect = 5e-98
Identities = 99/168 (58%), Positives = 124/168 (73%), Gaps = 1/168 (0%)
Query: 168 SAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGG 227
S P K + DK EF+E++RQALYASKIVSYAQGF L+R A+E +GW L+ G IA +WRGG
Sbjct: 293 SGPAAKFEGDKAEFIEDVRQALYASKIVSYAQGFALLRAASEEYGWDLDLGEIARIWRGG 352
Query: 228 CIIRSVFLGNIKAAFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSALLGIPTPAFAT 287
CIIR+ FL I A++ NP L+NLLLDP+FKD + Q + R VV+ + GIP PAF++
Sbjct: 353 CIIRAQFLQKITDAYEANPDLANLLLDPYFKDILEEYQDALRRVVALAVQAGIPVPAFSS 412
Query: 288 ALAFYDGYRSKRLPANLLQAQRDYFGAHTYELLAAPGKFVHTNWTGHG 335
AL++YD YR+ RLPANL+QAQRDYFGAHTYE G F HT W+ G
Sbjct: 413 ALSYYDSYRTARLPANLIQAQRDYFGAHTYERTDKEGFF-HTEWSEDG 459
|
Length = 459 |
| >gnl|CDD|236453 PRK09287, PRK09287, 6-phosphogluconate dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 292 bits (751), Expect = 4e-94
Identities = 98/156 (62%), Positives = 119/156 (76%), Gaps = 2/156 (1%)
Query: 337 NSIAAKVGS-EPCCDWVGEQGAGHFVKMVHNGIEYGDMQLICEAYHLMTGALGMSHDEMS 395
IAAKV EPC ++G GAGH+VKMVHNGIEYGDMQLI EAY L+ LG+S +E++
Sbjct: 145 EKIAAKVEDGEPCVTYIGPDGAGHYVKMVHNGIEYGDMQLIAEAYDLLKDGLGLSAEEIA 204
Query: 396 AVFEDWNKGELDSFLIEITKDILKFKD-TDGAPLVEKIKDYAGQKGTGKWTAISALDYGV 454
VF +WNKGEL+S+LIEIT DIL+ KD G PLV+ I D AGQKGTGKWT+ SALD GV
Sbjct: 205 DVFAEWNKGELNSYLIEITADILRQKDEETGKPLVDVILDKAGQKGTGKWTSQSALDLGV 264
Query: 455 PVTLIGESVFSRCLSSLFDERQKASQVLQGPNPTYK 490
P+TLI E+VF+R LSSL D+R AS+VL GP ++
Sbjct: 265 PLTLITEAVFARYLSSLKDQRVAASKVLSGPAAKFE 300
|
Length = 459 |
| >gnl|CDD|223439 COG0362, Gnd, 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 288 bits (739), Expect = 3e-92
Identities = 99/160 (61%), Positives = 126/160 (78%)
Query: 2 AAKGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEE 61
K DIG+IGLAVMG NL LN+ DHG+TV YNRTT K D FLA AKG NI+ A+S+EE
Sbjct: 1 MMKADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAERAKGKNIVPAYSIEE 60
Query: 62 LVKNLKKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKG 121
V +L+KPR+++++VKAG+ VD I++L+PLLEKGDIIIDGGNS Y+DT RR+K L KG
Sbjct: 61 FVASLEKPRKILLMVKAGTPVDAVIEQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKG 120
Query: 122 LLYVGCGVSGGEDGARYGPSLMPGGNPAAWPALKPIFQKL 161
+L+VG GVSGGE+GAR+GPS+MPGG A+ + PI K+
Sbjct: 121 ILFVGMGVSGGEEGARHGPSIMPGGQKEAYELVAPILTKI 160
|
Length = 473 |
| >gnl|CDD|223439 COG0362, Gnd, 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 287 bits (737), Expect = 5e-92
Identities = 105/170 (61%), Positives = 127/170 (74%), Gaps = 1/170 (0%)
Query: 168 SAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGG 227
+ P DK+EF+E++RQALYASKIVSYAQGF L+R A++ +GW LN G IAL+WRGG
Sbjct: 305 AGPKLGEPGDKEEFIEDVRQALYASKIVSYAQGFALLRAASKEYGWDLNLGEIALIWRGG 364
Query: 228 CIIRSVFLGNIKAAFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSALLGIPTPAFAT 287
CIIRS FL I AFD+NP L+NLLL P+FK + Q S R VV+ + GIP PAF++
Sbjct: 365 CIIRSKFLDKITDAFDENPELANLLLAPYFKSILEEYQQSLRRVVAYAVEAGIPVPAFSS 424
Query: 288 ALAFYDGYRSKRLPANLLQAQRDYFGAHTYELLAAPGKFVHTNWTGHGGN 337
AL++YD YR+ RLPANL+QAQRDYFGAHTYE G F HTNWTG GGN
Sbjct: 425 ALSYYDSYRTARLPANLIQAQRDYFGAHTYERTDKEGFF-HTNWTGGGGN 473
|
Length = 473 |
| >gnl|CDD|223439 COG0362, Gnd, 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 286 bits (734), Expect = 2e-91
Identities = 105/150 (70%), Positives = 121/150 (80%), Gaps = 1/150 (0%)
Query: 337 NSIAAKVGSEPCCDWVGEQGAGHFVKMVHNGIEYGDMQLICEAYHLMTGALGMSHDEMSA 396
IAAKV EPCC W+G GAGHFVKMVHNGIEYGDMQLI EAY ++ LG+S +E++
Sbjct: 158 TKIAAKVDGEPCCTWIGPDGAGHFVKMVHNGIEYGDMQLIAEAYDILKDGLGLSAEEIAE 217
Query: 397 VFEDWNKGELDSFLIEITKDILKFKDTD-GAPLVEKIKDYAGQKGTGKWTAISALDYGVP 455
VFE+WNKGELDS+LIEIT DIL+ KD + G PLV+KI D AGQKGTGKWT ISALD GVP
Sbjct: 218 VFEEWNKGELDSYLIEITADILRKKDEEGGKPLVDKILDKAGQKGTGKWTVISALDLGVP 277
Query: 456 VTLIGESVFSRCLSSLFDERQKASQVLQGP 485
+TLI E+VF+R LSSL DER AS+VL GP
Sbjct: 278 LTLITEAVFARYLSSLKDERVAASKVLAGP 307
|
Length = 473 |
| >gnl|CDD|129951 TIGR00873, gnd, 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Score = 281 bits (720), Expect = 1e-89
Identities = 104/156 (66%), Positives = 129/156 (82%)
Query: 6 DIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKN 65
DIG+IGLAVMG NL LNM DHGFTV YNRT K D FLA AKG I+GA+S+EE V++
Sbjct: 1 DIGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAEHAKGKKIVGAYSIEEFVQS 60
Query: 66 LKKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYV 125
L++PR++M++VKAG+ VD I++L+PLLEKGDIIIDGGNS Y DT+RR K L+AKG+L+V
Sbjct: 61 LERPRKIMLMVKAGAPVDAVINQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFV 120
Query: 126 GCGVSGGEDGARYGPSLMPGGNPAAWPALKPIFQKL 161
G GVSGGE+GAR GPS+MPGG+ AWP + PIFQK+
Sbjct: 121 GSGVSGGEEGARKGPSIMPGGSAEAWPLVAPIFQKI 156
|
This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason [Energy metabolism, Pentose phosphate pathway]. Length = 467 |
| >gnl|CDD|236453 PRK09287, PRK09287, 6-phosphogluconate dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 277 bits (711), Expect = 3e-88
Identities = 84/146 (57%), Positives = 111/146 (76%)
Query: 15 MGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMM 74
MG+NL LN+ HG+TV YNRT K D FLA E KG I+ A++LEE V +L+KPR++++
Sbjct: 1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAEEGKGKKIVPAYTLEEFVASLEKPRKILL 60
Query: 75 LVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGGED 134
+VKAG+ VD I++L+PLLEKGDIIIDGGNS Y+DT RR K L KG+ ++G GVSGGE+
Sbjct: 61 MVKAGAPVDAVIEQLLPLLEKGDIIIDGGNSNYKDTIRREKELAEKGIHFIGMGVSGGEE 120
Query: 135 GARYGPSLMPGGNPAAWPALKPIFQK 160
GA +GPS+MPGG A+ + PI +K
Sbjct: 121 GALHGPSIMPGGQKEAYELVAPILEK 146
|
Length = 459 |
| >gnl|CDD|129951 TIGR00873, gnd, 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Score = 274 bits (704), Expect = 3e-87
Identities = 110/164 (67%), Positives = 131/164 (79%), Gaps = 1/164 (0%)
Query: 171 TPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGGCII 230
P+P DK+EF+E++RQALYASKI+SYAQGFML+R+A+E +GW LN G IAL+WRGGCII
Sbjct: 304 APEPAVDKEEFIEDVRQALYASKIISYAQGFMLLREASEEYGWDLNLGEIALIWRGGCII 363
Query: 231 RSVFLGNIKAAFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSALLGIPTPAFATALA 290
RS FL I AF +NP L+NLLL P+FKDA+ QS WR VV+ + GIP PAF+ AL+
Sbjct: 364 RSGFLDKITKAFAENPDLANLLLAPYFKDALKDAQSGWRRVVALAIEYGIPVPAFSAALS 423
Query: 291 FYDGYRSKRLPANLLQAQRDYFGAHTYELLAAP-GKFVHTNWTG 333
FYDGYR+ RLPANLLQAQRDYFGAHTYE P G+F HTNWTG
Sbjct: 424 FYDGYRTARLPANLLQAQRDYFGAHTYERTDKPRGEFFHTNWTG 467
|
This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason [Energy metabolism, Pentose phosphate pathway]. Length = 467 |
| >gnl|CDD|129951 TIGR00873, gnd, 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Score = 274 bits (702), Expect = 6e-87
Identities = 107/149 (71%), Positives = 122/149 (81%)
Query: 337 NSIAAKVGSEPCCDWVGEQGAGHFVKMVHNGIEYGDMQLICEAYHLMTGALGMSHDEMSA 396
IAAKV EPCC W+G GAGH+VKMVHNGIEYGDMQLICEAY ++ LG+S++E++
Sbjct: 154 QKIAAKVDGEPCCTWIGPDGAGHYVKMVHNGIEYGDMQLICEAYDILKDGLGLSNEEIAE 213
Query: 397 VFEDWNKGELDSFLIEITKDILKFKDTDGAPLVEKIKDYAGQKGTGKWTAISALDYGVPV 456
VF +WN GELDS+LIEIT DILK KD DG PLV+KI D AGQKGTGKWTAISALD GVPV
Sbjct: 214 VFTEWNNGELDSYLIEITADILKKKDEDGKPLVDKILDTAGQKGTGKWTAISALDLGVPV 273
Query: 457 TLIGESVFSRCLSSLFDERQKASQVLQGP 485
TLI ESVF+R LSSL +ER AS+VL GP
Sbjct: 274 TLITESVFARYLSSLKEERVAASKVLSGP 302
|
This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason [Energy metabolism, Pentose phosphate pathway]. Length = 467 |
| >gnl|CDD|215895 pfam00393, 6PGD, 6-phosphogluconate dehydrogenase, C-terminal domain | Back alignment and domain information |
|---|
Score = 264 bits (676), Expect = 2e-85
Identities = 91/131 (69%), Positives = 106/131 (80%)
Query: 358 GHFVKMVHNGIEYGDMQLICEAYHLMTGALGMSHDEMSAVFEDWNKGELDSFLIEITKDI 417
GH+VKMVHNGIEYGDMQLI EAY L+ LG+S+DE++ VFE+WNKGELDS+LIEIT DI
Sbjct: 1 GHYVKMVHNGIEYGDMQLIAEAYDLLKTVLGLSNDEIADVFEEWNKGELDSYLIEITADI 60
Query: 418 LKFKDTDGAPLVEKIKDYAGQKGTGKWTAISALDYGVPVTLIGESVFSRCLSSLFDERQK 477
L+ KD DG PLV+KI D AGQKGTGKWT SAL+ GVPV LI E+VF+R LSSL +ER
Sbjct: 61 LRKKDEDGKPLVDKILDKAGQKGTGKWTVQSALELGVPVPLITEAVFARYLSSLKEERVA 120
Query: 478 ASQVLQGPNPT 488
AS+VL GP
Sbjct: 121 ASKVLSGPKAA 131
|
This family represents the C-terminal all-alpha domain of 6-phosphogluconate dehydrogenase. The domain contains two structural repeats of 5 helices each. Length = 290 |
| >gnl|CDD|240287 PTZ00142, PTZ00142, 6-phosphogluconate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 263 bits (673), Expect = 1e-82
Identities = 96/158 (60%), Positives = 118/158 (74%), Gaps = 1/158 (0%)
Query: 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAK-GTNIIGAHSLEEL 62
DIGLIGLAVMGQNL LN+ GF + YNRT K + F+ + T + G H+LEEL
Sbjct: 1 MSDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGNTRVKGYHTLEEL 60
Query: 63 VKNLKKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGL 122
V +LKKPR+V++L+KAG AVD+ ID L+PLLEKGDIIIDGGN Y +T+RR K E KG+
Sbjct: 61 VNSLKKPRKVILLIKAGEAVDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGI 120
Query: 123 LYVGCGVSGGEDGARYGPSLMPGGNPAAWPALKPIFQK 160
LY+G GVSGGE+GARYGPSLMPGGN A+ +K I +K
Sbjct: 121 LYLGMGVSGGEEGARYGPSLMPGGNKEAYDHVKDILEK 158
|
Length = 470 |
| >gnl|CDD|240287 PTZ00142, PTZ00142, 6-phosphogluconate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 257 bits (657), Expect = 4e-80
Identities = 100/181 (55%), Positives = 122/181 (67%), Gaps = 2/181 (1%)
Query: 153 ALKPIFQKLNPSFETSAPTPK-PQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIH 211
ALK K + P K DKK F+++++ ALY SKI+SY QGF L+++A++
Sbjct: 291 ALKEERTKASSHLAGPNPANKTETEDKKYFIDDLKNALYCSKIISYTQGFFLIKEASKEF 350
Query: 212 GWKLNYGGIALMWRGGCIIRSVFLGNIKAAFDKNPALSNLLLDPFFKDAIHATQSSWRAV 271
GW LN G IA +WRGGCIIR+VFL IK AF KNP L L LDP F D + Q SWR V
Sbjct: 351 GWNLNLGEIARIWRGGCIIRAVFLDRIKNAFKKNPQLDLLFLDPDFNDELKNKQPSWRKV 410
Query: 272 VSQSALLGIPTPAFATALAFYDGYRSKRLPANLLQAQRDYFGAHTYELLAAPGKFVHTNW 331
VS + GIPTPAF+ +LA+Y YRS+ LPANL+QAQRDYFGAHTY+ L PG F HTNW
Sbjct: 411 VSMATKNGIPTPAFSASLAYYQMYRSQNLPANLVQAQRDYFGAHTYKRLDRPGAF-HTNW 469
Query: 332 T 332
Sbjct: 470 E 470
|
Length = 470 |
| >gnl|CDD|240287 PTZ00142, PTZ00142, 6-phosphogluconate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 238 bits (610), Expect = 3e-73
Identities = 87/153 (56%), Positives = 106/153 (69%), Gaps = 1/153 (0%)
Query: 339 IAAKVGSEPCCDWVGEQGAGHFVKMVHNGIEYGDMQLICEAYHLMTGALGMSHDEMSAVF 398
+AKVG PC +VG +GH+VKMVHNGIEYGDMQLI E+Y LM LGMS++E+S VF
Sbjct: 159 CSAKVGDSPCVTYVGPGSSGHYVKMVHNGIEYGDMQLISESYKLMKHILGMSNEELSEVF 218
Query: 399 EDWNKGELDSFLIEITKDIL-KFKDTDGAPLVEKIKDYAGQKGTGKWTAISALDYGVPVT 457
WN+G L+S+LIEIT IL K D LV+KI D AG KGTGKWT AL+ G+PV
Sbjct: 219 NKWNEGILNSYLIEITAKILAKKDDLGEEHLVDKILDIAGSKGTGKWTVQEALERGIPVP 278
Query: 458 LIGESVFSRCLSSLFDERQKASQVLQGPNPTYK 490
+ SV +R +S+L +ER KAS L GPNP K
Sbjct: 279 TMAASVDARNISALKEERTKASSHLAGPNPANK 311
|
Length = 470 |
| >gnl|CDD|236582 PRK09599, PRK09599, 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Score = 214 bits (549), Expect = 4e-66
Identities = 107/331 (32%), Positives = 150/331 (45%), Gaps = 58/331 (17%)
Query: 6 DIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKN 65
+G+IGL MG N+ + G VV Y+R V+ GA SLEELV
Sbjct: 2 QLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVE-----ALAEEGATGADSLEELVAK 56
Query: 66 LKKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYV 125
L PR V ++V AG D ID+L PLL GDI+IDGGNS Y+D RR++ L KG+ +V
Sbjct: 57 LPAPRVVWLMVPAGEITDATIDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIHFV 116
Query: 126 GCGVSGGEDGARYGPSLMPGGNPAAWPALKPIFQKLNPSFETSAPTPKPQRDKKEFLENI 185
G SGG G G LM GG+ A L+PIF+ L P E
Sbjct: 117 DVGTSGGVWGLERGYCLMIGGDKEAVERLEPIFKALAPRAEDG----------------- 159
Query: 186 RQALYA--------SKIV----------SYAQGFMLMRQAAEIHGWKLNYGGIALMWRGG 227
L+A K+V +YA+GF L+ + L+ +A +WR G
Sbjct: 160 --YLHAGPVGAGHFVKMVHNGIEYGMMQAYAEGFELLEA----SRFDLDLAAVAEVWRRG 213
Query: 228 CIIRSVFLGNIKAAFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSALLGIPTPAFAT 287
+IRS L A ++P L + + R V ++ L +P P A
Sbjct: 214 SVIRSWLLDLTADALAEDPKLDE------ISGYVEDS-GEGRWTVEEAIDLAVPAPVIAA 266
Query: 288 ALAFYDGYRSKR--LPAN-LLQAQRDYFGAH 315
AL + +RS++ A+ ++ A R+ FG H
Sbjct: 267 AL--FMRFRSRQEDSFADKVVAALRNGFGGH 295
|
Length = 301 |
| >gnl|CDD|215200 PLN02350, PLN02350, phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Score = 218 bits (556), Expect = 5e-65
Identities = 83/162 (51%), Positives = 108/162 (66%), Gaps = 2/162 (1%)
Query: 1 MAAKGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFL--ANEAKGTNIIGAHS 58
AA IGL GLAVMGQNL LN+ + GF + YNRTT+KVD + A + + G
Sbjct: 3 SAALSRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFKD 62
Query: 59 LEELVKNLKKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALE 118
E+ V +++KPR V++LVKAG+ VD I L +E GD IIDGGN Y++T+RR K
Sbjct: 63 PEDFVLSIQKPRSVIILVKAGAPVDQTIKALSEYMEPGDCIIDGGNEWYENTERRIKEAA 122
Query: 119 AKGLLYVGCGVSGGEDGARYGPSLMPGGNPAAWPALKPIFQK 160
KGLLY+G GVSGGE+GAR GPSLMPGG+ A+ ++ I +K
Sbjct: 123 EKGLLYLGMGVSGGEEGARNGPSLMPGGSFEAYKNIEDILEK 164
|
Length = 493 |
| >gnl|CDD|215200 PLN02350, PLN02350, phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Score = 214 bits (547), Expect = 9e-64
Identities = 88/166 (53%), Positives = 115/166 (69%), Gaps = 1/166 (0%)
Query: 167 TSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRG 226
+ DKK+ ++++RQALYASKI SYAQG L+R + GW LN G +A +W+G
Sbjct: 315 EDILSADSGVDKKQLIDDVRQALYASKICSYAQGMNLIRAKSVEKGWNLNLGELARIWKG 374
Query: 227 GCIIRSVFLGNIKAAFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSALLGIPTPAFA 286
GCIIR+VFL IK A+D+NP L++LL+DP F + Q++WR VVS + GI TP +
Sbjct: 375 GCIIRAVFLDRIKKAYDRNPDLASLLVDPEFAKEMVERQAAWRRVVSLAINAGISTPGMS 434
Query: 287 TALAFYDGYRSKRLPANLLQAQRDYFGAHTYELLAAPGKFVHTNWT 332
+LA++D YR RLPANL+QAQRDYFGAHTYE + PG F HT WT
Sbjct: 435 ASLAYFDTYRRARLPANLVQAQRDYFGAHTYERVDRPGSF-HTEWT 479
|
Length = 493 |
| >gnl|CDD|217563 pfam03446, NAD_binding_2, NAD binding domain of 6-phosphogluconate dehydrogenase | Back alignment and domain information |
|---|
Score = 202 bits (516), Expect = 3e-63
Identities = 70/160 (43%), Positives = 94/160 (58%), Gaps = 12/160 (7%)
Query: 6 DIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKN 65
IG IGL VMG + LN+ G+TV YNRT KV+ +A A +GA S E V +
Sbjct: 2 KIGFIGLGVMGSPMALNLLKAGYTVTVYNRTPEKVEELVAEGA-----VGAASPAEFVAS 56
Query: 66 LKKPRRVMMLVKAGSAVDDFI---DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGL 122
V+ +V AG+AVD I D L+P L+ GDIIIDG S+ DT RR+K L KG+
Sbjct: 57 A---DVVITMVPAGAAVDAVILGEDGLLPGLKPGDIIIDGSTSDPDDTRRRAKELAEKGI 113
Query: 123 LYVGCGVSGGEDGARYGP-SLMPGGNPAAWPALKPIFQKL 161
++ VSGGE+GA G S+M GG+ A+ +KPI + +
Sbjct: 114 HFLDAPVSGGEEGAEAGTLSIMVGGDEEAFERVKPILEAM 153
|
The NAD binding domain of 6-phosphogluconate dehydrogenase adopts a Rossmann fold. Length = 163 |
| >gnl|CDD|215200 PLN02350, PLN02350, phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Score = 193 bits (491), Expect = 1e-55
Identities = 76/148 (51%), Positives = 98/148 (66%), Gaps = 1/148 (0%)
Query: 339 IAAKVGSEPCCDWVGEQGAGHFVKMVHNGIEYGDMQLICEAYHLMTGALGMSHDEMSAVF 398
+AA+V PC ++G GAG+FVKMVHNGIEYGDMQLI EAY ++ G+S++E++ VF
Sbjct: 165 VAAQVDDGPCVTYIGPGGAGNFVKMVHNGIEYGDMQLISEAYDVLKSVGGLSNEELAEVF 224
Query: 399 EDWNKGELDSFLIEITKDILKFKD-TDGAPLVEKIKDYAGQKGTGKWTAISALDYGVPVT 457
+WNKGEL+SFLIEIT DI KD LV+KI D G KGTGKWT A + V
Sbjct: 225 AEWNKGELESFLIEITADIFSVKDDKGDGYLVDKILDKTGMKGTGKWTVQQAAELSVAAP 284
Query: 458 LIGESVFSRCLSSLFDERQKASQVLQGP 485
I S+ +R LS L +ER A++V +
Sbjct: 285 TIAASLDARYLSGLKEERVAAAKVFKEA 312
|
Length = 493 |
| >gnl|CDD|223954 COG1023, Gnd, Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 187 bits (477), Expect = 1e-55
Identities = 106/317 (33%), Positives = 150/317 (47%), Gaps = 33/317 (10%)
Query: 7 IGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNL 66
IG+IGL MG NL+ + D G VV Y+ V+ E K GA SL+ELV L
Sbjct: 3 IGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVE-----ELKDEGATGAASLDELVAKL 57
Query: 67 KKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVG 126
PR V ++V AG D ID L PLL GDI+IDGGNS Y+D+ RR+K L KG+ ++
Sbjct: 58 SAPRIVWLMVPAGDITDAVIDDLAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIHFLD 117
Query: 127 CGVSGGEDGARYGPSLMPGGNPAAWPALKPIFQKLNPSFETSAPTPKP-----QRDKKEF 181
G SGG GA G LM GG+ A ++L P F+ AP F
Sbjct: 118 VGTSGGVWGAERGYCLMIGGDEEAV-------ERLEPIFKALAPGEDGYLYCGPSGSGHF 170
Query: 182 LENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGGCIIRSVFLGNIKAA 241
++ + + + + A+GF L++ + + +A +W G +IRS L A
Sbjct: 171 VKMVHNGIEYGMMQAIAEGFELLKN----SPFDYDLEAVAEVWNHGSVIRSWLLDLTAEA 226
Query: 242 FDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSALLGIPTPAFATALAFYDGYRSKRL- 300
F K+P L + + R V ++ LG+P P A AL +RS++
Sbjct: 227 FKKDPDLDQ------ISGRVSDS-GEGRWTVEEALDLGVPAPVIALAL--MMRFRSRQDD 277
Query: 301 --PANLLQAQRDYFGAH 315
+L A R+ FG H
Sbjct: 278 TFAGKVLAALRNEFGGH 294
|
Length = 300 |
| >gnl|CDD|237116 PRK12490, PRK12490, 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Score = 172 bits (437), Expect = 8e-50
Identities = 97/313 (30%), Positives = 148/313 (47%), Gaps = 25/313 (7%)
Query: 7 IGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNL 66
+GLIGL MG N+ + + G VV Y+ VD A I HSLEELV L
Sbjct: 3 LGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVD-----VAGKLGITARHSLEELVSKL 57
Query: 67 KKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVG 126
+ PR + ++V AG + I L PLL GDI++DGGNS Y+D RR++ L +G+ YV
Sbjct: 58 EAPRTIWVMVPAGEVTESVIKDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIHYVD 117
Query: 127 CGVSGGEDGARYGPSLMPGGNPAAWPALKPIFQKL---NPSFETSAPTPKPQRDKKEFLE 183
CG SGG G R G LM GG+ + L+P+F+ L P + + P FL+
Sbjct: 118 CGTSGGVWGLRNGYCLMVGGDKEIYDRLEPVFKALAPEGPGYVHAGPV-----GSGHFLK 172
Query: 184 NIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGGCIIRSVFLGNIKAAFD 243
+ + + +YA+G L+ ++ + +A +WR G +IRS L A
Sbjct: 173 MVHNGIEYGMMQAYAEGLELLDKSDFD----FDVEDVARLWRNGSVIRSWLLDLTVKALA 228
Query: 244 KNPALSNLLLDPFFKDAIHATQSSWRAVVSQSALLGIPTPAFATAL-AFYDGYRSKRLPA 302
++P L+ + + D+ R V ++ L + P A +L +
Sbjct: 229 EDPKLAG--IKGYVNDS-----GEGRWTVEEAIELAVAAPVIAASLFMRFASQEDDSFHM 281
Query: 303 NLLQAQRDYFGAH 315
++ A R+ FG H
Sbjct: 282 KVVSALRNQFGGH 294
|
Length = 299 |
| >gnl|CDD|233163 TIGR00872, gnd_rel, 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Score = 157 bits (399), Expect = 2e-44
Identities = 95/315 (30%), Positives = 146/315 (46%), Gaps = 24/315 (7%)
Query: 7 IGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNL 66
+GLIGL MG N++ + G V Y+ V K G +L EL + L
Sbjct: 3 LGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVK-----AMKEDRTTGVANLRELSQRL 57
Query: 67 KKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVG 126
PR V ++V G VD +++L P LEKGDI+IDGGNS Y+D+ RR K L+ KG+ +
Sbjct: 58 SAPRVVWVMVPHG-IVDAVLEELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLD 116
Query: 127 CGVSGGEDGARYGPSLMPGGNPAAWPALKPIFQKLNPSFETSAPTPKPQRDKKEFLENIR 186
CG SGG G G M GG+ A+ +P+F + P + F++ +
Sbjct: 117 CGTSGGVWGRERGYCFMIGGDGEAFARAEPLFADVAPEEQGYLYC--GPCGSGHFVKMVH 174
Query: 187 QALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGGCIIRSVFLGNIKAAFDKNP 246
+ + + A+GF ++R + + + +A +WR G +IRS L AF ++P
Sbjct: 175 NGIEYGMMAAIAEGFEILRNSQ----FDFDIPEVARVWRRGSVIRSWLLDLTAIAFRESP 230
Query: 247 ALSNLLLDPFFKDAIHATQSSWRAVVSQSALLGIPTPAFATALAFYDGYRSKRL---PAN 303
L+ F + + R V + LG+P P AT + + S+ L
Sbjct: 231 DLAE------FSGRVSDSGEG-RWTVIAAIDLGVPAPVIAT--SLQSRFASRDLDDFANK 281
Query: 304 LLQAQRDYFGAHTYE 318
+L A R FG H +
Sbjct: 282 VLAALRKEFGGHAEK 296
|
This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle [Energy metabolism, Pentose phosphate pathway]. Length = 298 |
| >gnl|CDD|236582 PRK09599, PRK09599, 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Score = 99.1 bits (248), Expect = 4e-23
Identities = 52/129 (40%), Positives = 72/129 (55%), Gaps = 13/129 (10%)
Query: 352 VGEQGAGHFVKMVHNGIEYGDMQLICEAYHLMTGALGMSHDEMSAVFEDWNKGE-LDSFL 410
G GAGHFVKMVHNGIEYG MQ E + L+ A D ++AV E W +G + S+L
Sbjct: 163 AGPVGAGHFVKMVHNGIEYGMMQAYAEGFELLE-ASRFDLD-LAAVAEVWRRGSVIRSWL 220
Query: 411 IEITKDILKFKDTDGAPLVEKIKDYAGQKGTGKWTAISALDYGVPVTLIGESVFSRCLSS 470
+++T D L +D P +++I Y G G+WT A+D VP +I ++F R
Sbjct: 221 LDLTADALA-ED----PKLDEISGYVEDSGEGRWTVEEAIDLAVPAPVIAAALFMR---- 271
Query: 471 LFDERQKAS 479
F RQ+ S
Sbjct: 272 -FRSRQEDS 279
|
Length = 301 |
| >gnl|CDD|223954 COG1023, Gnd, Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 96.3 bits (240), Expect = 4e-22
Identities = 48/119 (40%), Positives = 68/119 (57%), Gaps = 10/119 (8%)
Query: 350 DWVGEQGAGHFVKMVHNGIEYGDMQLICEAYHLMTGALGMSHD-EMSAVFEDWNKGE-LD 407
+ G G+GHFVKMVHNGIEYG MQ I E + L+ + D ++ AV E WN G +
Sbjct: 160 LYCGPSGSGHFVKMVHNGIEYGMMQAIAEGFELLKNS---PFDYDLEAVAEVWNHGSVIR 216
Query: 408 SFLIEITKDILKFKDTDGAPLVEKIKDYAGQKGTGKWTAISALDYGVPVTLIGESVFSR 466
S+L+++T + K KD D +++I G G+WT ALD GVP +I ++ R
Sbjct: 217 SWLLDLTAEAFK-KDPD----LDQISGRVSDSGEGRWTVEEALDLGVPAPVIALALMMR 270
|
Length = 300 |
| >gnl|CDD|237116 PRK12490, PRK12490, 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Score = 91.3 bits (227), Expect = 2e-20
Identities = 41/116 (35%), Positives = 58/116 (50%), Gaps = 8/116 (6%)
Query: 352 VGEQGAGHFVKMVHNGIEYGDMQLICEAYHLMTGALGMSHDEMSAVFEDWNKGE-LDSFL 410
G G+GHF+KMVHNGIEYG MQ E L+ + ++ V W G + S+L
Sbjct: 162 AGPVGSGHFLKMVHNGIEYGMMQAYAEGLELLDKS--DFDFDVEDVARLWRNGSVIRSWL 219
Query: 411 IEITKDILKFKDTDGAPLVEKIKDYAGQKGTGKWTAISALDYGVPVTLIGESVFSR 466
+++T L D P + IK Y G G+WT A++ V +I S+F R
Sbjct: 220 LDLTVKAL---AED--PKLAGIKGYVNDSGEGRWTVEEAIELAVAAPVIAASLFMR 270
|
Length = 299 |
| >gnl|CDD|233163 TIGR00872, gnd_rel, 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Score = 83.4 bits (206), Expect = 9e-18
Identities = 41/118 (34%), Positives = 64/118 (54%), Gaps = 10/118 (8%)
Query: 351 WVGEQGAGHFVKMVHNGIEYGDMQLICEAYHLMTGALGMSHD-EMSAVFEDWNKGE-LDS 408
+ G G+GHFVKMVHNGIEYG M I E + ++ + D ++ V W +G + S
Sbjct: 160 YCGPCGSGHFVKMVHNGIEYGMMAAIAEGFEILRNS---QFDFDIPEVARVWRRGSVIRS 216
Query: 409 FLIEITKDILKFKDTDGAPLVEKIKDYAGQKGTGKWTAISALDYGVPVTLIGESVFSR 466
+L+++T + + D + + G G+WT I+A+D GVP +I S+ SR
Sbjct: 217 WLLDLTAIAFR-ESPD----LAEFSGRVSDSGEGRWTVIAAIDLGVPAPVIATSLQSR 269
|
This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle [Energy metabolism, Pentose phosphate pathway]. Length = 298 |
| >gnl|CDD|224995 COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 80.7 bits (200), Expect = 6e-17
Identities = 58/205 (28%), Positives = 85/205 (41%), Gaps = 16/205 (7%)
Query: 7 IGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNL 66
I IGL +MG + N+ G V YNRT K LA A G A S E
Sbjct: 3 IAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLA--AAG--ATVAASPAEAAAEA 58
Query: 67 KKPRRVMMLVKAGSAVDDFI---DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLL 123
V+ ++ +AV + + L+ L+ G I+ID + + AL AKGL
Sbjct: 59 D---VVITMLPDDAAVRAVLFGENGLLEGLKPGAIVIDMSTISPETARELAAALAAKGLE 115
Query: 124 YVGCGVSGGEDGARYG-PSLMPGGNPAAWPALKPIFQKLNPSFETSAPTPKPQRDKKEFL 182
++ VSGG GA G ++M GG+ A+ KP+ + + + P Q K
Sbjct: 116 FLDAPVSGGVPGAAAGTLTIMVGGDAEAFERAKPVLEAMGKNIVHVGPVGAGQAAKL--- 172
Query: 183 ENIRQALYASKIVSYAQGFMLMRQA 207
L A I + A+ L +A
Sbjct: 173 --ANNILLAGNIAALAEALALAEKA 195
|
Length = 286 |
| >gnl|CDD|130569 TIGR01505, tartro_sem_red, 2-hydroxy-3-oxopropionate reductase | Back alignment and domain information |
|---|
Score = 57.2 bits (138), Expect = 5e-09
Identities = 41/159 (25%), Positives = 76/159 (47%), Gaps = 12/159 (7%)
Query: 7 IGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNL 66
+G IGL +MG + +N+ G+ + D LA GA + E +
Sbjct: 2 VGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELLA--------AGAVTAETARQVT 53
Query: 67 KKPRRVMMLVKAGSAVDDFI---DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLL 123
++ + +V V++ + ++ + G ++D + ++ R +KA++ KG+
Sbjct: 54 EQADVIFTMVPDSPQVEEVAFGENGIIEGAKPGKTLVDMSSISPIESKRFAKAVKEKGID 113
Query: 124 YVGCGVSGGEDGARYGP-SLMPGGNPAAWPALKPIFQKL 161
Y+ VSGGE GA G S+M GG+ A + +KP+F+ L
Sbjct: 114 YLDAPVSGGEIGAIEGTLSIMVGGDQAVFDRVKPLFEAL 152
|
This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism. Length = 291 |
| >gnl|CDD|183197 PRK11559, garR, tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 8e-08
Identities = 39/163 (23%), Positives = 75/163 (46%), Gaps = 12/163 (7%)
Query: 6 DIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKN 65
+G IGL +MG+ + N+ G+++V Y+R V +A A+ A + + + +
Sbjct: 4 KVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAGAE-----TASTAKAVAE- 57
Query: 66 LKKPRRVMMLVKAGSAVDDFI---DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGL 122
+ + ML V + + ++ + G ++ID + + + AL+AKG+
Sbjct: 58 -QCDVIITML-PNSPHVKEVALGENGIIEGAKPGTVVIDMSSIAPLASREIAAALKAKGI 115
Query: 123 LYVGCGVSGGEDGARYGP-SLMPGGNPAAWPALKPIFQKLNPS 164
+ VSGGE A G S+M GG+ A + + + + S
Sbjct: 116 EMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGS 158
|
Length = 296 |
| >gnl|CDD|130753 TIGR01692, HIBADH, 3-hydroxyisobutyrate dehydrogenase | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 2e-05
Identities = 39/154 (25%), Positives = 68/154 (44%), Gaps = 12/154 (7%)
Query: 10 IGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKP 69
IGL MG + N+ G V ++ V+ +A A+ A S E +
Sbjct: 2 IGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVAAGAQ-----AAASPAEAA---EGA 53
Query: 70 RRVMMLVKAGS---AVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVG 126
RV+ ++ AG +V + ++P + KG ++ID + + ++ A G +++
Sbjct: 54 DRVITMLPAGQHVISVYSGDEGILPKVAKGSLLIDCSTIDPDSARKLAELAAAHGAVFMD 113
Query: 127 CGVSGGEDGARYGP-SLMPGGNPAAWPALKPIFQ 159
VSGG GAR G + M GG + A +P+
Sbjct: 114 APVSGGVGGARAGTLTFMVGGVAEEFAAAEPVLG 147
|
3-hydroxyisobutyrate dehydrogenase is an enzyme that catalyzes the NAD+-dependent oxidation of 3-hydroxyisobutyrate to methylmalonate semialdehyde of the valine catabolism pathway. In Pseudomonas aeruginosa, 3-hydroxyisobutyrate dehydrogenase (mmsB) is co-induced with methylmalonate-semialdehyde dehydrogenase (mmsA) when grown on medium containing valine as the sole carbon source. The positive transcriptional regulator of this operon (mmsR) is located upstream of these genes and has been identified as a member of the XylS/AraC family of transcriptional regulators. 3-hydroxyisobutyrate dehydrogenase shares high sequence homology to the characterized 3-hydroxyisobutyrate dehydrogenase from rat liver with conservation of proposed NAD+ binding residues at the N-terminus (G-8,10,13,24 and D-31). This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446) [Energy metabolism, Amino acids and amines]. Length = 288 |
| >gnl|CDD|185019 PRK15059, PRK15059, tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Score = 44.2 bits (104), Expect = 7e-05
Identities = 44/160 (27%), Positives = 76/160 (47%), Gaps = 15/160 (9%)
Query: 7 IGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKV-DSFLANEAKGTNIIGAHSLEELVKN 65
+G IGL +MG + +N+ G + + T V D L+ +GA S+E +
Sbjct: 3 LGFIGLGIMGTPMAINLARAGHQL--HVTTIGPVADELLS--------LGAVSVETARQV 52
Query: 66 LKKPRRVMMLVKAGSAVDDFI---DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGL 122
+ + ++V V++ + + KG I+D + +T R ++ + G
Sbjct: 53 TEASDIIFIMVPDTPQVEEVLFGENGCTKASLKGKTIVDMSSISPIETKRFARQVNELGG 112
Query: 123 LYVGCGVSGGEDGARYGP-SLMPGGNPAAWPALKPIFQKL 161
Y+ VSGGE GAR G S+M GG+ A + +KP+F+ L
Sbjct: 113 DYLDAPVSGGEIGAREGTLSIMVGGDEAVFERVKPLFELL 152
|
Length = 292 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 490 | |||
| COG0362 | 473 | Gnd 6-phosphogluconate dehydrogenase [Carbohydrate | 100.0 | |
| KOG2653|consensus | 487 | 100.0 | ||
| COG1023 | 300 | Gnd Predicted 6-phosphogluconate dehydrogenase [Ca | 100.0 | |
| PTZ00142 | 470 | 6-phosphogluconate dehydrogenase; Provisional | 100.0 | |
| TIGR00873 | 467 | gnd 6-phosphogluconate dehydrogenase, decarboxylat | 100.0 | |
| PRK09287 | 459 | 6-phosphogluconate dehydrogenase; Validated | 100.0 | |
| PLN02350 | 493 | phosphogluconate dehydrogenase (decarboxylating) | 100.0 | |
| TIGR00872 | 298 | gnd_rel 6-phosphogluconate dehydrogenase (decarbox | 100.0 | |
| COG2084 | 286 | MmsB 3-hydroxyisobutyrate dehydrogenase and relate | 100.0 | |
| PRK09599 | 301 | 6-phosphogluconate dehydrogenase-like protein; Rev | 100.0 | |
| PRK12490 | 299 | 6-phosphogluconate dehydrogenase-like protein; Rev | 100.0 | |
| KOG0409|consensus | 327 | 100.0 | ||
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 100.0 | |
| PF00393 | 291 | 6PGD: 6-phosphogluconate dehydrogenase, C-terminal | 100.0 | |
| PRK15059 | 292 | tartronate semialdehyde reductase; Provisional | 100.0 | |
| PRK15461 | 296 | NADH-dependent gamma-hydroxybutyrate dehydrogenase | 100.0 | |
| TIGR01692 | 288 | HIBADH 3-hydroxyisobutyrate dehydrogenase. This en | 100.0 | |
| TIGR01505 | 291 | tartro_sem_red 2-hydroxy-3-oxopropionate reductase | 100.0 | |
| PRK11559 | 296 | garR tartronate semialdehyde reductase; Provisiona | 100.0 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 100.0 | |
| COG0362 | 473 | Gnd 6-phosphogluconate dehydrogenase [Carbohydrate | 100.0 | |
| PF00393 | 291 | 6PGD: 6-phosphogluconate dehydrogenase, C-terminal | 100.0 | |
| KOG2653|consensus | 487 | 100.0 | ||
| PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 99.98 | |
| PRK09287 | 459 | 6-phosphogluconate dehydrogenase; Validated | 99.97 | |
| TIGR03026 | 411 | NDP-sugDHase nucleotide sugar dehydrogenase. All o | 99.97 | |
| TIGR00873 | 467 | gnd 6-phosphogluconate dehydrogenase, decarboxylat | 99.97 | |
| PTZ00142 | 470 | 6-phosphogluconate dehydrogenase; Provisional | 99.97 | |
| PLN02350 | 493 | phosphogluconate dehydrogenase (decarboxylating) | 99.96 | |
| PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 99.94 | |
| PRK15182 | 425 | Vi polysaccharide biosynthesis protein TviB; Provi | 99.94 | |
| PRK15057 | 388 | UDP-glucose 6-dehydrogenase; Provisional | 99.93 | |
| PRK14618 | 328 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 99.91 | |
| PRK00094 | 325 | gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr | 99.91 | |
| PRK14619 | 308 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 99.89 | |
| COG1004 | 414 | Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en | 99.88 | |
| PRK06129 | 308 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 99.87 | |
| PLN02353 | 473 | probable UDP-glucose 6-dehydrogenase | 99.86 | |
| TIGR00872 | 298 | gnd_rel 6-phosphogluconate dehydrogenase (decarbox | 99.86 | |
| COG0677 | 436 | WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas | 99.84 | |
| PRK12557 | 342 | H(2)-dependent methylenetetrahydromethanopterin de | 99.83 | |
| PRK08229 | 341 | 2-dehydropantoate 2-reductase; Provisional | 99.83 | |
| PLN02688 | 266 | pyrroline-5-carboxylate reductase | 99.82 | |
| PRK07531 | 495 | bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe | 99.79 | |
| PRK07679 | 279 | pyrroline-5-carboxylate reductase; Reviewed | 99.77 | |
| PRK08507 | 275 | prephenate dehydrogenase; Validated | 99.77 | |
| PRK11199 | 374 | tyrA bifunctional chorismate mutase/prephenate deh | 99.74 | |
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 99.74 | |
| PRK09260 | 288 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.73 | |
| PRK08268 | 507 | 3-hydroxy-acyl-CoA dehydrogenase; Validated | 99.72 | |
| PRK08655 | 437 | prephenate dehydrogenase; Provisional | 99.72 | |
| TIGR02279 | 503 | PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa | 99.69 | |
| PRK06130 | 311 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.67 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.66 | |
| PRK07530 | 292 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.65 | |
| COG0240 | 329 | GpsA Glycerol-3-phosphate dehydrogenase [Energy pr | 99.65 | |
| PLN02545 | 295 | 3-hydroxybutyryl-CoA dehydrogenase | 99.64 | |
| COG1023 | 300 | Gnd Predicted 6-phosphogluconate dehydrogenase [Ca | 99.61 | |
| PRK11880 | 267 | pyrroline-5-carboxylate reductase; Reviewed | 99.59 | |
| PRK07680 | 273 | late competence protein ComER; Validated | 99.59 | |
| TIGR01724 | 341 | hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome | 99.59 | |
| PRK12921 | 305 | 2-dehydropantoate 2-reductase; Provisional | 99.58 | |
| PRK06476 | 258 | pyrroline-5-carboxylate reductase; Reviewed | 99.58 | |
| PRK09599 | 301 | 6-phosphogluconate dehydrogenase-like protein; Rev | 99.58 | |
| PRK07502 | 307 | cyclohexadienyl dehydrogenase; Validated | 99.57 | |
| PRK12439 | 341 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 99.57 | |
| PRK06522 | 304 | 2-dehydropantoate 2-reductase; Reviewed | 99.56 | |
| PF14833 | 122 | NAD_binding_11: NAD-binding of NADP-dependent 3-hy | 99.55 | |
| PRK14620 | 326 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 99.55 | |
| PRK06545 | 359 | prephenate dehydrogenase; Validated | 99.55 | |
| COG0287 | 279 | TyrA Prephenate dehydrogenase [Amino acid transpor | 99.53 | |
| PRK06035 | 291 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 99.52 | |
| PRK12490 | 299 | 6-phosphogluconate dehydrogenase-like protein; Rev | 99.51 | |
| PRK05808 | 282 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.51 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 99.5 | |
| PRK06249 | 313 | 2-dehydropantoate 2-reductase; Provisional | 99.49 | |
| PTZ00345 | 365 | glycerol-3-phosphate dehydrogenase; Provisional | 99.48 | |
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.47 | |
| TIGR03376 | 342 | glycerol3P_DH glycerol-3-phosphate dehydrogenase ( | 99.47 | |
| PRK12491 | 272 | pyrroline-5-carboxylate reductase; Reviewed | 99.46 | |
| PLN02256 | 304 | arogenate dehydrogenase | 99.46 | |
| PLN02712 | 667 | arogenate dehydrogenase | 99.45 | |
| PRK08269 | 314 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.44 | |
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.44 | |
| PRK05708 | 305 | 2-dehydropantoate 2-reductase; Provisional | 99.43 | |
| TIGR01915 | 219 | npdG NADPH-dependent F420 reductase. This model re | 99.37 | |
| COG1893 | 307 | ApbA Ketopantoate reductase [Coenzyme metabolism] | 99.36 | |
| PRK08818 | 370 | prephenate dehydrogenase; Provisional | 99.36 | |
| PF03807 | 96 | F420_oxidored: NADP oxidoreductase coenzyme F420-d | 99.35 | |
| PLN02712 | 667 | arogenate dehydrogenase | 99.35 | |
| PRK14806 | 735 | bifunctional cyclohexadienyl dehydrogenase/ 3-phos | 99.3 | |
| PF01210 | 157 | NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate | 99.3 | |
| PRK07634 | 245 | pyrroline-5-carboxylate reductase; Reviewed | 99.29 | |
| PTZ00431 | 260 | pyrroline carboxylate reductase; Provisional | 99.27 | |
| PF10727 | 127 | Rossmann-like: Rossmann-like domain; InterPro: IPR | 99.26 | |
| COG2085 | 211 | Predicted dinucleotide-binding enzymes [General fu | 99.25 | |
| COG0345 | 266 | ProC Pyrroline-5-carboxylate reductase [Amino acid | 99.25 | |
| PRK05479 | 330 | ketol-acid reductoisomerase; Provisional | 99.24 | |
| PRK06928 | 277 | pyrroline-5-carboxylate reductase; Reviewed | 99.23 | |
| cd01075 | 200 | NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l | 99.23 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 99.17 | |
| KOG2666|consensus | 481 | 99.13 | ||
| PRK07574 | 385 | formate dehydrogenase; Provisional | 99.11 | |
| PRK12480 | 330 | D-lactate dehydrogenase; Provisional | 99.11 | |
| PLN03139 | 386 | formate dehydrogenase; Provisional | 99.09 | |
| COG1250 | 307 | FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo | 99.06 | |
| PRK13243 | 333 | glyoxylate reductase; Reviewed | 99.05 | |
| TIGR00745 | 293 | apbA_panE 2-dehydropantoate 2-reductase. This mode | 99.03 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 99.02 | |
| PF02153 | 258 | PDH: Prephenate dehydrogenase; InterPro: IPR003099 | 99.02 | |
| PRK11730 | 715 | fadB multifunctional fatty acid oxidation complex | 99.02 | |
| TIGR00465 | 314 | ilvC ketol-acid reductoisomerase. This is the seco | 99.01 | |
| TIGR02437 | 714 | FadB fatty oxidation complex, alpha subunit FadB. | 99.0 | |
| PRK13403 | 335 | ketol-acid reductoisomerase; Provisional | 98.98 | |
| PRK06436 | 303 | glycerate dehydrogenase; Provisional | 98.98 | |
| PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 98.98 | |
| PRK15469 | 312 | ghrA bifunctional glyoxylate/hydroxypyruvate reduc | 98.96 | |
| PRK11154 | 708 | fadJ multifunctional fatty acid oxidation complex | 98.95 | |
| PRK08605 | 332 | D-lactate dehydrogenase; Validated | 98.94 | |
| TIGR02440 | 699 | FadJ fatty oxidation complex, alpha subunit FadJ. | 98.94 | |
| TIGR02441 | 737 | fa_ox_alpha_mit fatty acid oxidation complex, alph | 98.94 | |
| KOG2380|consensus | 480 | 98.89 | ||
| PF07991 | 165 | IlvN: Acetohydroxy acid isomeroreductase, catalyti | 98.85 | |
| PLN02928 | 347 | oxidoreductase family protein | 98.84 | |
| PRK13302 | 271 | putative L-aspartate dehydrogenase; Provisional | 98.81 | |
| TIGR01327 | 525 | PGDH D-3-phosphoglycerate dehydrogenase. This mode | 98.81 | |
| PRK13581 | 526 | D-3-phosphoglycerate dehydrogenase; Provisional | 98.78 | |
| PRK00257 | 381 | erythronate-4-phosphate dehydrogenase; Validated | 98.74 | |
| COG0111 | 324 | SerA Phosphoglycerate dehydrogenase and related de | 98.71 | |
| COG1052 | 324 | LdhA Lactate dehydrogenase and related dehydrogena | 98.68 | |
| PRK08410 | 311 | 2-hydroxyacid dehydrogenase; Provisional | 98.67 | |
| PRK15409 | 323 | bifunctional glyoxylate/hydroxypyruvate reductase | 98.66 | |
| PRK14194 | 301 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 98.64 | |
| PRK11790 | 409 | D-3-phosphoglycerate dehydrogenase; Provisional | 98.63 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 98.63 | |
| PRK06487 | 317 | glycerate dehydrogenase; Provisional | 98.62 | |
| PRK15438 | 378 | erythronate-4-phosphate dehydrogenase PdxB; Provis | 98.61 | |
| PRK06932 | 314 | glycerate dehydrogenase; Provisional | 98.61 | |
| PRK13304 | 265 | L-aspartate dehydrogenase; Reviewed | 98.56 | |
| PRK06141 | 314 | ornithine cyclodeaminase; Validated | 98.55 | |
| PLN02306 | 386 | hydroxypyruvate reductase | 98.51 | |
| COG2084 | 286 | MmsB 3-hydroxyisobutyrate dehydrogenase and relate | 98.47 | |
| PRK06444 | 197 | prephenate dehydrogenase; Provisional | 98.46 | |
| PF14833 | 122 | NAD_binding_11: NAD-binding of NADP-dependent 3-hy | 98.46 | |
| COG4007 | 340 | Predicted dehydrogenase related to H2-forming N5,N | 98.46 | |
| KOG0069|consensus | 336 | 98.44 | ||
| PRK15059 | 292 | tartronate semialdehyde reductase; Provisional | 98.43 | |
| PF02558 | 151 | ApbA: Ketopantoate reductase PanE/ApbA; InterPro: | 98.41 | |
| PRK14188 | 296 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 98.41 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 98.39 | |
| KOG2304|consensus | 298 | 98.38 | ||
| TIGR00507 | 270 | aroE shikimate 5-dehydrogenase. This model finds p | 98.37 | |
| cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain | 98.31 | |
| TIGR00112 | 245 | proC pyrroline-5-carboxylate reductase. This enzym | 98.31 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 98.29 | |
| PF01408 | 120 | GFO_IDH_MocA: Oxidoreductase family, NAD-binding R | 98.28 | |
| TIGR01692 | 288 | HIBADH 3-hydroxyisobutyrate dehydrogenase. This en | 98.27 | |
| PRK14179 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 98.24 | |
| COG0059 | 338 | IlvC Ketol-acid reductoisomerase [Amino acid trans | 98.23 | |
| PF00984 | 96 | UDPG_MGDP_dh: UDP-glucose/GDP-mannose dehydrogenas | 98.2 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 98.18 | |
| TIGR02371 | 325 | ala_DH_arch alanine dehydrogenase, Archaeoglobus f | 98.13 | |
| smart00859 | 122 | Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin | 98.13 | |
| PRK11559 | 296 | garR tartronate semialdehyde reductase; Provisiona | 98.11 | |
| PRK06223 | 307 | malate dehydrogenase; Reviewed | 98.09 | |
| PRK05225 | 487 | ketol-acid reductoisomerase; Validated | 98.06 | |
| TIGR01505 | 291 | tartro_sem_red 2-hydroxy-3-oxopropionate reductase | 98.02 | |
| PLN00203 | 519 | glutamyl-tRNA reductase | 98.01 | |
| PTZ00075 | 476 | Adenosylhomocysteinase; Provisional | 98.0 | |
| PRK15461 | 296 | NADH-dependent gamma-hydroxybutyrate dehydrogenase | 97.99 | |
| KOG2305|consensus | 313 | 97.99 | ||
| TIGR01763 | 305 | MalateDH_bact malate dehydrogenase, NAD-dependent. | 97.99 | |
| PRK09310 | 477 | aroDE bifunctional 3-dehydroquinate dehydratase/sh | 97.98 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 97.95 | |
| TIGR01921 | 324 | DAP-DH diaminopimelate dehydrogenase. This model r | 97.94 | |
| PF00670 | 162 | AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase | 97.91 | |
| TIGR00936 | 406 | ahcY adenosylhomocysteinase. This enzyme hydrolyze | 97.87 | |
| PRK06407 | 301 | ornithine cyclodeaminase; Provisional | 97.86 | |
| PLN02819 | 1042 | lysine-ketoglutarate reductase/saccharopine dehydr | 97.85 | |
| PRK07340 | 304 | ornithine cyclodeaminase; Validated | 97.84 | |
| COG1712 | 255 | Predicted dinucleotide-utilizing enzyme [General f | 97.84 | |
| TIGR01035 | 417 | hemA glutamyl-tRNA reductase. This enzyme, togethe | 97.82 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 97.81 | |
| PRK08618 | 325 | ornithine cyclodeaminase; Validated | 97.81 | |
| cd05292 | 308 | LDH_2 A subgroup of L-lactate dehydrogenases. L-la | 97.8 | |
| PF01113 | 124 | DapB_N: Dihydrodipicolinate reductase, N-terminus; | 97.8 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 97.8 | |
| cd01483 | 143 | E1_enzyme_family Superfamily of activating enzymes | 97.79 | |
| KOG2711|consensus | 372 | 97.78 | ||
| PRK00045 | 423 | hemA glutamyl-tRNA reductase; Reviewed | 97.78 | |
| PRK06823 | 315 | ornithine cyclodeaminase; Validated | 97.77 | |
| TIGR02992 | 326 | ectoine_eutC ectoine utilization protein EutC. Mem | 97.77 | |
| PRK11579 | 346 | putative oxidoreductase; Provisional | 97.76 | |
| TIGR01809 | 282 | Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO | 97.76 | |
| PRK13301 | 267 | putative L-aspartate dehydrogenase; Provisional | 97.73 | |
| COG0673 | 342 | MviM Predicted dehydrogenases and related proteins | 97.73 | |
| PLN02494 | 477 | adenosylhomocysteinase | 97.73 | |
| PRK00258 | 278 | aroE shikimate 5-dehydrogenase; Reviewed | 97.72 | |
| PRK13303 | 265 | L-aspartate dehydrogenase; Provisional | 97.72 | |
| PRK08291 | 330 | ectoine utilization protein EutC; Validated | 97.72 | |
| cd05297 | 423 | GH4_alpha_glucosidase_galactosidase Glycoside Hydr | 97.72 | |
| PTZ00082 | 321 | L-lactate dehydrogenase; Provisional | 97.69 | |
| PRK12549 | 284 | shikimate 5-dehydrogenase; Reviewed | 97.69 | |
| PRK00048 | 257 | dihydrodipicolinate reductase; Provisional | 97.67 | |
| COG0373 | 414 | HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | 97.65 | |
| cd01078 | 194 | NAD_bind_H4MPT_DH NADP binding domain of methylene | 97.63 | |
| KOG0068|consensus | 406 | 97.63 | ||
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 97.62 | |
| PF03435 | 386 | Saccharop_dh: Saccharopine dehydrogenase ; InterPr | 97.62 | |
| cd01339 | 300 | LDH-like_MDH L-lactate dehydrogenase-like malate d | 97.61 | |
| PF02423 | 313 | OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst | 97.59 | |
| COG2423 | 330 | Predicted ornithine cyclodeaminase, mu-crystallin | 97.58 | |
| cd05291 | 306 | HicDH_like L-2-hydroxyisocapronate dehydrogenases | 97.54 | |
| PRK06046 | 326 | alanine dehydrogenase; Validated | 97.53 | |
| TIGR01761 | 343 | thiaz-red thiazolinyl imide reductase. This reduct | 97.5 | |
| cd01080 | 168 | NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of | 97.46 | |
| PF00056 | 141 | Ldh_1_N: lactate/malate dehydrogenase, NAD binding | 97.44 | |
| TIGR00036 | 266 | dapB dihydrodipicolinate reductase. | 97.44 | |
| PTZ00117 | 319 | malate dehydrogenase; Provisional | 97.43 | |
| PRK07589 | 346 | ornithine cyclodeaminase; Validated | 97.41 | |
| PRK13940 | 414 | glutamyl-tRNA reductase; Provisional | 97.41 | |
| PRK08300 | 302 | acetaldehyde dehydrogenase; Validated | 97.38 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 97.37 | |
| KOG0409|consensus | 327 | 97.37 | ||
| PRK03659 | 601 | glutathione-regulated potassium-efflux system prot | 97.35 | |
| cd05293 | 312 | LDH_1 A subgroup of L-lactate dehydrogenases. L-la | 97.32 | |
| PRK10669 | 558 | putative cation:proton antiport protein; Provision | 97.32 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 97.31 | |
| PF01118 | 121 | Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi | 97.3 | |
| KOG2741|consensus | 351 | 97.29 | ||
| cd05191 | 86 | NAD_bind_amino_acid_DH NAD(P) binding domain of am | 97.29 | |
| PRK06199 | 379 | ornithine cyclodeaminase; Validated | 97.29 | |
| COG5495 | 289 | Uncharacterized conserved protein [Function unknow | 97.27 | |
| PF01262 | 168 | AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal | 97.27 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 97.26 | |
| COG0686 | 371 | Ald Alanine dehydrogenase [Amino acid transport an | 97.2 | |
| PRK06349 | 426 | homoserine dehydrogenase; Provisional | 97.18 | |
| cd01076 | 227 | NAD_bind_1_Glu_DH NAD(P) binding domain of glutama | 97.18 | |
| PRK03562 | 621 | glutathione-regulated potassium-efflux system prot | 97.17 | |
| PRK00066 | 315 | ldh L-lactate dehydrogenase; Reviewed | 97.16 | |
| PRK00436 | 343 | argC N-acetyl-gamma-glutamyl-phosphate reductase; | 97.14 | |
| cd00650 | 263 | LDH_MDH_like NAD-dependent, lactate dehydrogenase- | 97.13 | |
| PRK15076 | 431 | alpha-galactosidase; Provisional | 97.12 | |
| PF10100 | 429 | DUF2338: Uncharacterized protein conserved in bact | 97.12 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 97.11 | |
| TIGR03215 | 285 | ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati | 97.11 | |
| cd00300 | 300 | LDH_like L-lactate dehydrogenase-like enzymes. Mem | 97.11 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 97.11 | |
| TIGR01850 | 346 | argC N-acetyl-gamma-glutamyl-phosphate reductase, | 97.09 | |
| PRK02318 | 381 | mannitol-1-phosphate 5-dehydrogenase; Provisional | 97.09 | |
| PRK04207 | 341 | glyceraldehyde-3-phosphate dehydrogenase; Provisio | 97.09 | |
| PRK14175 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.06 | |
| PRK06270 | 341 | homoserine dehydrogenase; Provisional | 97.05 | |
| PF13380 | 116 | CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5 | 97.03 | |
| PRK14189 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.0 | |
| cd05211 | 217 | NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of | 96.97 | |
| COG2910 | 211 | Putative NADH-flavin reductase [General function p | 96.96 | |
| cd05311 | 226 | NAD_bind_2_malic_enz NAD(P) binding domain of mali | 96.96 | |
| PRK05442 | 326 | malate dehydrogenase; Provisional | 96.92 | |
| PRK10206 | 344 | putative oxidoreductase; Provisional | 96.91 | |
| COG0169 | 283 | AroE Shikimate 5-dehydrogenase [Amino acid transpo | 96.89 | |
| KOG3124|consensus | 267 | 96.86 | ||
| cd05294 | 309 | LDH-like_MDH_nadp A lactate dehydrogenases-like st | 96.86 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 96.81 | |
| PF13460 | 183 | NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X | 96.8 | |
| PRK10792 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.76 | |
| TIGR02354 | 200 | thiF_fam2 thiamine biosynthesis protein ThiF, fami | 96.75 | |
| cd01337 | 310 | MDH_glyoxysomal_mitochondrial Glyoxysomal and mito | 96.71 | |
| PRK12548 | 289 | shikimate 5-dehydrogenase; Provisional | 96.63 | |
| PLN02602 | 350 | lactate dehydrogenase | 96.63 | |
| COG0771 | 448 | MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas | 96.62 | |
| PRK01710 | 458 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.62 | |
| PRK14027 | 283 | quinate/shikimate dehydrogenase; Provisional | 96.61 | |
| PF00899 | 135 | ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a | 96.61 | |
| PRK05671 | 336 | aspartate-semialdehyde dehydrogenase; Reviewed | 96.59 | |
| PRK12749 | 288 | quinate/shikimate dehydrogenase; Reviewed | 96.59 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 96.58 | |
| PRK11861 | 673 | bifunctional prephenate dehydrogenase/3-phosphoshi | 96.57 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 96.54 | |
| cd05212 | 140 | NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom | 96.52 | |
| PRK14192 | 283 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.52 | |
| PRK14176 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.49 | |
| PRK00683 | 418 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.48 | |
| PF02882 | 160 | THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl | 96.44 | |
| TIGR01772 | 312 | MDH_euk_gproteo malate dehydrogenase, NAD-dependen | 96.39 | |
| cd01487 | 174 | E1_ThiF_like E1_ThiF_like. Member of superfamily o | 96.39 | |
| PRK14982 | 340 | acyl-ACP reductase; Provisional | 96.38 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 96.36 | |
| TIGR02717 | 447 | AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP | 96.34 | |
| PRK08328 | 231 | hypothetical protein; Provisional | 96.33 | |
| CHL00194 | 317 | ycf39 Ycf39; Provisional | 96.32 | |
| PLN02968 | 381 | Probable N-acetyl-gamma-glutamyl-phosphate reducta | 96.32 | |
| cd05290 | 307 | LDH_3 A subgroup of L-lactate dehydrogenases. L-la | 96.31 | |
| PRK07688 | 339 | thiamine/molybdopterin biosynthesis ThiF/MoeB-like | 96.31 | |
| PTZ00325 | 321 | malate dehydrogenase; Provisional | 96.23 | |
| PRK14191 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.22 | |
| PRK06392 | 326 | homoserine dehydrogenase; Provisional | 96.19 | |
| TIGR01759 | 323 | MalateDH-SF1 malate dehydrogenase. This model repr | 96.18 | |
| COG0002 | 349 | ArgC Acetylglutamate semialdehyde dehydrogenase [A | 96.17 | |
| PRK05472 | 213 | redox-sensing transcriptional repressor Rex; Provi | 96.14 | |
| PRK05086 | 312 | malate dehydrogenase; Provisional | 96.14 | |
| cd01338 | 322 | MDH_choloroplast_like Chloroplast-like malate dehy | 96.11 | |
| PRK08644 | 212 | thiamine biosynthesis protein ThiF; Provisional | 96.08 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.08 | |
| PRK03369 | 488 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.04 | |
| PLN00106 | 323 | malate dehydrogenase | 96.03 | |
| PLN00112 | 444 | malate dehydrogenase (NADP); Provisional | 96.02 | |
| PF03720 | 106 | UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogen | 96.01 | |
| PF02629 | 96 | CoA_binding: CoA binding domain; InterPro: IPR0037 | 96.0 | |
| PRK14183 | 281 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.99 | |
| COG4408 | 431 | Uncharacterized protein conserved in bacteria [Fun | 95.99 | |
| cd00757 | 228 | ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1 | 95.97 | |
| cd01485 | 198 | E1-1_like Ubiquitin activating enzyme (E1), repeat | 95.95 | |
| PLN02477 | 410 | glutamate dehydrogenase | 95.92 | |
| PRK09414 | 445 | glutamate dehydrogenase; Provisional | 95.91 | |
| PRK14874 | 334 | aspartate-semialdehyde dehydrogenase; Provisional | 95.9 | |
| PF05368 | 233 | NmrA: NmrA-like family; InterPro: IPR008030 NmrA i | 95.87 | |
| PRK06718 | 202 | precorrin-2 dehydrogenase; Reviewed | 95.87 | |
| COG0039 | 313 | Mdh Malate/lactate dehydrogenases [Energy producti | 95.82 | |
| COG2344 | 211 | AT-rich DNA-binding protein [General function pred | 95.8 | |
| TIGR02355 | 240 | moeB molybdopterin synthase sulfurylase MoeB. This | 95.78 | |
| PRK00141 | 473 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.76 | |
| PRK08223 | 287 | hypothetical protein; Validated | 95.75 | |
| PRK14173 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.68 | |
| cd01492 | 197 | Aos1_SUMO Ubiquitin activating enzyme (E1) subunit | 95.68 | |
| TIGR01470 | 205 | cysG_Nterm siroheme synthase, N-terminal domain. T | 95.66 | |
| PF03447 | 117 | NAD_binding_3: Homoserine dehydrogenase, NAD bindi | 95.65 | |
| PRK06719 | 157 | precorrin-2 dehydrogenase; Validated | 95.64 | |
| TIGR01757 | 387 | Malate-DH_plant malate dehydrogenase, NADP-depende | 95.62 | |
| PRK14170 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.61 | |
| PRK14186 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.58 | |
| COG0460 | 333 | ThrA Homoserine dehydrogenase [Amino acid transpor | 95.58 | |
| PRK02472 | 447 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.56 | |
| PLN00141 | 251 | Tic62-NAD(P)-related group II protein; Provisional | 95.55 | |
| PRK00421 | 461 | murC UDP-N-acetylmuramate--L-alanine ligase; Provi | 95.54 | |
| PRK12550 | 272 | shikimate 5-dehydrogenase; Reviewed | 95.53 | |
| cd01079 | 197 | NAD_bind_m-THF_DH NAD binding domain of methylene- | 95.53 | |
| PRK00676 | 338 | hemA glutamyl-tRNA reductase; Validated | 95.52 | |
| PRK14172 | 278 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.52 | |
| PRK08664 | 349 | aspartate-semialdehyde dehydrogenase; Reviewed | 95.51 | |
| PRK05690 | 245 | molybdopterin biosynthesis protein MoeB; Provision | 95.51 | |
| PRK14177 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.5 | |
| PRK14178 | 279 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.48 | |
| PRK03803 | 448 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.45 | |
| TIGR01019 | 286 | sucCoAalpha succinyl-CoA synthetase, alpha subunit | 95.45 | |
| PRK02006 | 498 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.43 | |
| PRK14169 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.43 | |
| PRK14852 | 989 | hypothetical protein; Provisional | 95.43 | |
| PRK14180 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.42 | |
| PRK05678 | 291 | succinyl-CoA synthetase subunit alpha; Validated | 95.41 | |
| PRK01390 | 460 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.41 | |
| PRK14166 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.4 | |
| cd00704 | 323 | MDH Malate dehydrogenase. Malate dehydrogenase (MD | 95.4 | |
| cd05313 | 254 | NAD_bind_2_Glu_DH NAD(P) binding domain of glutama | 95.36 | |
| PRK14187 | 294 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.34 | |
| PRK14030 | 445 | glutamate dehydrogenase; Provisional | 95.29 | |
| PLN02520 | 529 | bifunctional 3-dehydroquinate dehydratase/shikimat | 95.29 | |
| PRK05993 | 277 | short chain dehydrogenase; Provisional | 95.28 | |
| PRK14573 | 809 | bifunctional D-alanyl-alanine synthetase A/UDP-N-a | 95.25 | |
| PRK08374 | 336 | homoserine dehydrogenase; Provisional | 95.23 | |
| PRK00961 | 342 | H(2)-dependent methylenetetrahydromethanopterin de | 95.19 | |
| PRK01438 | 480 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.17 | |
| PRK08163 | 396 | salicylate hydroxylase; Provisional | 95.16 | |
| PRK14190 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.16 | |
| cd01336 | 325 | MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli | 95.16 | |
| TIGR01546 | 333 | GAPDH-II_archae glyceraldehyde-3-phosphate dehydro | 95.16 | |
| PRK14193 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.15 | |
| PRK05884 | 223 | short chain dehydrogenase; Provisional | 95.15 | |
| PRK05597 | 355 | molybdopterin biosynthesis protein MoeB; Validated | 95.11 | |
| PLN02516 | 299 | methylenetetrahydrofolate dehydrogenase (NADP+) | 95.11 | |
| PRK14851 | 679 | hypothetical protein; Provisional | 95.06 | |
| PRK14182 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.02 | |
| PRK08762 | 376 | molybdopterin biosynthesis protein MoeB; Validated | 95.01 | |
| PRK14171 | 288 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.99 | |
| TIGR01771 | 299 | L-LDH-NAD L-lactate dehydrogenase. This model repr | 94.95 | |
| TIGR03649 | 285 | ergot_EASG ergot alkaloid biosynthesis protein, AF | 94.93 | |
| PLN02353 | 473 | probable UDP-glucose 6-dehydrogenase | 94.91 | |
| PLN02616 | 364 | tetrahydrofolate dehydrogenase/cyclohydrolase, put | 94.9 | |
| PRK07878 | 392 | molybdopterin biosynthesis-like protein MoeZ; Vali | 94.86 | |
| COG0190 | 283 | FolD 5,10-methylene-tetrahydrofolate dehydrogenase | 94.85 | |
| TIGR01087 | 433 | murD UDP-N-acetylmuramoylalanine--D-glutamate liga | 94.84 | |
| COG0499 | 420 | SAM1 S-adenosylhomocysteine hydrolase [Coenzyme me | 94.82 | |
| PLN02897 | 345 | tetrahydrofolate dehydrogenase/cyclohydrolase, put | 94.81 | |
| cd00755 | 231 | YgdL_like Family of activating enzymes (E1) of ubi | 94.8 | |
| TIGR01758 | 324 | MDH_euk_cyt malate dehydrogenase, NAD-dependent. T | 94.75 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 94.73 | |
| PRK08040 | 336 | putative semialdehyde dehydrogenase; Provisional | 94.71 | |
| TIGR01082 | 448 | murC UDP-N-acetylmuramate--alanine ligase. UDP-N-a | 94.7 | |
| TIGR01723 | 340 | hmd_TIGR 5,10-methenyltetrahydromethanopterin hydr | 94.7 | |
| PRK04308 | 445 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.65 | |
| TIGR02964 | 246 | xanthine_xdhC xanthine dehydrogenase accessory pro | 94.64 | |
| PRK06847 | 375 | hypothetical protein; Provisional | 94.64 | |
| PRK14181 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.63 | |
| TIGR00978 | 341 | asd_EA aspartate-semialdehyde dehydrogenase (non-p | 94.63 | |
| PRK06180 | 277 | short chain dehydrogenase; Provisional | 94.61 | |
| PRK07454 | 241 | short chain dehydrogenase; Provisional | 94.53 | |
| PRK14031 | 444 | glutamate dehydrogenase; Provisional | 94.52 | |
| PLN02383 | 344 | aspartate semialdehyde dehydrogenase | 94.5 | |
| PRK02705 | 459 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.48 | |
| PLN03209 | 576 | translocon at the inner envelope of chloroplast su | 94.44 | |
| PRK07877 | 722 | hypothetical protein; Provisional | 94.43 | |
| PRK10537 | 393 | voltage-gated potassium channel; Provisional | 94.36 | |
| PRK05600 | 370 | thiamine biosynthesis protein ThiF; Validated | 94.33 | |
| cd05298 | 437 | GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; | 94.31 | |
| COG1486 | 442 | CelF Alpha-galactosidases/6-phospho-beta-glucosida | 94.31 | |
| PF00208 | 244 | ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Val | 94.3 | |
| PRK07060 | 245 | short chain dehydrogenase; Provisional | 94.26 | |
| PRK14168 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.25 | |
| PRK12429 | 258 | 3-hydroxybutyrate dehydrogenase; Provisional | 94.25 | |
| TIGR01296 | 339 | asd_B aspartate-semialdehyde dehydrogenase (peptid | 94.21 | |
| PRK12409 | 410 | D-amino acid dehydrogenase small subunit; Provisio | 94.18 | |
| PRK07236 | 386 | hypothetical protein; Provisional | 94.18 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 94.17 | |
| PRK05653 | 246 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 94.14 | |
| PRK14185 | 293 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.11 | |
| TIGR01851 | 310 | argC_other N-acetyl-gamma-glutamyl-phosphate reduc | 94.08 | |
| PRK11863 | 313 | N-acetyl-gamma-glutamyl-phosphate reductase; Provi | 94.08 | |
| PRK06182 | 273 | short chain dehydrogenase; Validated | 94.04 | |
| TIGR03736 | 244 | PRTRC_ThiF PRTRC system ThiF family protein. A nov | 94.01 | |
| PRK15116 | 268 | sulfur acceptor protein CsdL; Provisional | 93.97 | |
| PRK07411 | 390 | hypothetical protein; Validated | 93.89 | |
| PRK06101 | 240 | short chain dehydrogenase; Provisional | 93.89 | |
| PRK08309 | 177 | short chain dehydrogenase; Provisional | 93.85 | |
| PLN00016 | 378 | RNA-binding protein; Provisional | 93.85 | |
| COG0289 | 266 | DapB Dihydrodipicolinate reductase [Amino acid tra | 93.75 | |
| cd05197 | 425 | GH4_glycoside_hydrolases Glycoside Hydrases Family | 93.74 | |
| PRK12809 | 639 | putative oxidoreductase Fe-S binding subunit; Revi | 93.7 | |
| PRK14167 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.7 | |
| cd01489 | 312 | Uba2_SUMO Ubiquitin activating enzyme (E1) subunit | 93.69 | |
| PF13450 | 68 | NAD_binding_8: NAD(P)-binding Rossmann-like domain | 93.63 | |
| COG0026 | 375 | PurK Phosphoribosylaminoimidazole carboxylase (NCA | 93.59 | |
| PLN02657 | 390 | 3,8-divinyl protochlorophyllide a 8-vinyl reductas | 93.58 | |
| PRK11908 | 347 | NAD-dependent epimerase/dehydratase family protein | 93.56 | |
| PRK10538 | 248 | malonic semialdehyde reductase; Provisional | 93.52 | |
| PRK08340 | 259 | glucose-1-dehydrogenase; Provisional | 93.46 | |
| KOG3007|consensus | 333 | 93.44 | ||
| cd01484 | 234 | E1-2_like Ubiquitin activating enzyme (E1), repeat | 93.43 | |
| PRK12939 | 250 | short chain dehydrogenase; Provisional | 93.43 | |
| PRK07326 | 237 | short chain dehydrogenase; Provisional | 93.42 | |
| PRK06019 | 372 | phosphoribosylaminoimidazole carboxylase ATPase su | 93.4 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 93.39 | |
| TIGR03466 | 328 | HpnA hopanoid-associated sugar epimerase. The sequ | 93.35 | |
| PRK06728 | 347 | aspartate-semialdehyde dehydrogenase; Provisional | 93.34 | |
| COG4091 | 438 | Predicted homoserine dehydrogenase [Amino acid tra | 93.31 | |
| cd01491 | 286 | Ube1_repeat1 Ubiquitin activating enzyme (E1), rep | 93.29 | |
| PRK00711 | 416 | D-amino acid dehydrogenase small subunit; Validate | 93.28 | |
| PLN02896 | 353 | cinnamyl-alcohol dehydrogenase | 93.26 | |
| cd05296 | 419 | GH4_P_beta_glucosidase Glycoside Hydrolases Family | 93.24 | |
| PRK03806 | 438 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 93.23 | |
| PRK05786 | 238 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 93.21 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 93.2 | |
| COG0334 | 411 | GdhA Glutamate dehydrogenase/leucine dehydrogenase | 93.17 | |
| PRK14184 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.11 | |
| PRK08265 | 261 | short chain dehydrogenase; Provisional | 93.09 | |
| PRK05868 | 372 | hypothetical protein; Validated | 93.08 | |
| PRK06753 | 373 | hypothetical protein; Provisional | 93.07 | |
| PRK12826 | 251 | 3-ketoacyl-(acyl-carrier-protein) reductase; Revie | 93.05 | |
| PRK08219 | 227 | short chain dehydrogenase; Provisional | 93.04 | |
| PF02056 | 183 | Glyco_hydro_4: Family 4 glycosyl hydrolase; InterP | 93.04 | |
| TIGR03325 | 262 | BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro | 93.02 | |
| PRK09186 | 256 | flagellin modification protein A; Provisional | 92.92 | |
| PRK14174 | 295 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 92.89 | |
| PRK13394 | 262 | 3-hydroxybutyrate dehydrogenase; Provisional | 92.88 | |
| TIGR01777 | 292 | yfcH conserved hypothetical protein TIGR01777. Thi | 92.85 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 92.83 | |
| PF01494 | 356 | FAD_binding_3: FAD binding domain; InterPro: IPR00 | 92.82 | |
| PRK05693 | 274 | short chain dehydrogenase; Provisional | 92.79 | |
| PRK08267 | 260 | short chain dehydrogenase; Provisional | 92.78 | |
| PRK07024 | 257 | short chain dehydrogenase; Provisional | 92.78 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 92.77 | |
| PRK06179 | 270 | short chain dehydrogenase; Provisional | 92.76 | |
| PF00070 | 80 | Pyr_redox: Pyridine nucleotide-disulphide oxidored | 92.74 | |
| PRK06057 | 255 | short chain dehydrogenase; Provisional | 92.71 | |
| PRK06953 | 222 | short chain dehydrogenase; Provisional | 92.69 | |
| PRK12769 | 654 | putative oxidoreductase Fe-S binding subunit; Revi | 92.66 | |
| PRK06598 | 369 | aspartate-semialdehyde dehydrogenase; Reviewed | 92.66 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 92.64 | |
| PLN02695 | 370 | GDP-D-mannose-3',5'-epimerase | 92.61 | |
| COG0665 | 387 | DadA Glycine/D-amino acid oxidases (deaminating) [ | 92.6 | |
| PRK07825 | 273 | short chain dehydrogenase; Provisional | 92.59 | |
| PRK07774 | 250 | short chain dehydrogenase; Provisional | 92.58 | |
| PRK07523 | 255 | gluconate 5-dehydrogenase; Provisional | 92.57 | |
| PRK12828 | 239 | short chain dehydrogenase; Provisional | 92.49 | |
| PRK07074 | 257 | short chain dehydrogenase; Provisional | 92.47 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 92.42 | |
| PRK07364 | 415 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 92.4 | |
| KOG1370|consensus | 434 | 92.38 | ||
| COG0300 | 265 | DltE Short-chain dehydrogenases of various substra | 92.32 | |
| PRK12829 | 264 | short chain dehydrogenase; Provisional | 92.3 | |
| PRK03815 | 401 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 92.28 | |
| PRK01368 | 454 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 92.25 | |
| PRK05732 | 395 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 92.25 | |
| TIGR01318 | 467 | gltD_gamma_fam glutamate synthase small subunit fa | 92.23 | |
| PF04016 | 147 | DUF364: Domain of unknown function (DUF364); Inter | 92.22 | |
| PRK07538 | 413 | hypothetical protein; Provisional | 92.21 | |
| PRK04690 | 468 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 92.2 | |
| PRK07045 | 388 | putative monooxygenase; Reviewed | 92.19 | |
| KOG0023|consensus | 360 | 92.17 | ||
| TIGR03855 | 229 | NAD_NadX aspartate dehydrogenase. Members of this | 92.15 | |
| PLN02427 | 386 | UDP-apiose/xylose synthase | 92.13 |
| >COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-92 Score=694.36 Aligned_cols=305 Identities=66% Similarity=1.108 Sum_probs=294.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
++.||+||||+||.+||+|++++||+|.+|||+++++++|.+......++.++.|++|++++|++|+.|++||.++.+|+
T Consensus 3 ~~~iGviGLaVMG~NLaLNi~~~G~~VavyNRt~~ktd~f~~~~~~~k~i~~~~sieefV~~Le~PRkI~lMVkAG~~VD 82 (473)
T COG0362 3 KADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAERAKGKNIVPAYSIEEFVASLEKPRKILLMVKAGTPVD 82 (473)
T ss_pred ccceeeEehhhhhHHHHHHHHhcCceEEEEeCCHHHHHHHHHhCccCCCccccCcHHHHHHHhcCCceEEEEEecCCcHH
Confidence 46899999999999999999999999999999999999999887766789999999999999999999999999999999
Q ss_pred HHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCCCccccccCCccCCCCCcchHHHHHHHHHhhCC
Q psy9637 84 DFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGGEDGARYGPSLMPGGNPAAWPALKPIFQKLNP 163 (490)
Q Consensus 84 ~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg~~~a~~G~~im~GG~~~a~~~v~~ll~~l~~ 163 (490)
+++++|+|+|.+||||||+||++|+||.||.+.+.++|++|+.++||||+++|++||+||+||++++|+.++|+|+++++
T Consensus 83 ~~I~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVSGGEeGA~~GPSiMpGG~~eay~~v~pil~~IaA 162 (473)
T COG0362 83 AVIEQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGVSGGEEGARHGPSIMPGGQKEAYELVAPILTKIAA 162 (473)
T ss_pred HHHHHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEeccccccccccccCCCcCCCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999997765
Q ss_pred ceeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhcccchhhHhHhHhHHhhc
Q psy9637 164 SFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGGCIIRSVFLGNIKAAFD 243 (490)
Q Consensus 164 ~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~~~v~~i~~~g~~~~s~~l~~i~~~~~ 243 (490)
T Consensus 163 -------------------------------------------------------------------------------- 162 (473)
T COG0362 163 -------------------------------------------------------------------------------- 162 (473)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCcccccccCChhHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhCCChhhhHHHHHHhhcccccccccCC
Q psy9637 244 KNPALSNLLLDPFFKDAIHATQSSWRAVVSQSALLGIPTPAFATALAFYDGYRSKRLPANLLQAQRDYFGAHTYELLAAP 323 (490)
Q Consensus 244 ~~~~~~~~~~~~~f~~~l~~~~kDl~~~~~~A~~~gv~~P~~~aa~~~~~~~~~~g~~~~~~~a~rd~fgah~~~r~~~~ 323 (490)
T Consensus 163 -------------------------------------------------------------------------------- 162 (473)
T COG0362 163 -------------------------------------------------------------------------------- 162 (473)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCceeecccCCCCCCccccCCCCCcceeecCCCCcchhHHhhhhHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhcc
Q psy9637 324 GKFVHTNWTGHGGNSIAAKVGSEPCCDWVGEQGAGHFVKMVHNGIEYGDMQLICEAYHLMTGALGMSHDEMSAVFEDWNK 403 (490)
Q Consensus 324 ~~~~h~~w~~~~~~~~~a~~~~~~c~~~~g~~g~gh~vkmvhngiey~~m~~~~E~~~~~~~~~~~~~~~~~~~~~~w~~ 403 (490)
+++++|||+|+||+||||||||||||||||+||+|||+|.|||..+|||++||++||+.||+
T Consensus 163 ------------------k~~g~pCc~~iG~~GAGHfVKmVHNGIEYgDMQlIaE~Y~ilk~~lgls~~ei~~vF~~WN~ 224 (473)
T COG0362 163 ------------------KVDGEPCCTWIGPDGAGHFVKMVHNGIEYGDMQLIAEAYDILKDGLGLSAEEIAEVFEEWNK 224 (473)
T ss_pred ------------------hcCCCCceeeECCCCCCceeeeeecCchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhcc
Confidence 23578999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhHHHHHHHHHhcccCCC-CCcchhhhccccCCCcchHHHHHHHHhcCCCchhhHHHHHHHhhccCchHHHHHHhhc
Q psy9637 404 GELDSFLIEITKDILKFKDTD-GAPLVEKIKDYAGQKGTGKWTAISALDYGVPVTLIGESVFSRCLSSLFDERQKASQVL 482 (490)
Q Consensus 404 g~~~s~l~~~~~~~~~~~~~~-~~~~l~~i~~~~~~~g~g~w~~~~a~~~~~p~~~i~~a~~~r~~s~~~~~r~~~~~~~ 482 (490)
|+|+|||+|||++||++||++ ++|++|.|+|.++||||||||+++|+++|||+|+|++|||+|++|+.|++|..+++.|
T Consensus 225 geL~SYLIeIT~~IL~~kD~~~~kplvd~ILD~AgQKGTGkWt~~~AldlGvP~t~I~eaVfAR~lSs~K~eR~~Ask~l 304 (473)
T COG0362 225 GELDSYLIEITADILRKKDEEGGKPLVDKILDKAGQKGTGKWTVISALDLGVPLTLITEAVFARYLSSLKDERVAASKVL 304 (473)
T ss_pred CcchHHHHHHHHHHHhhcCcccCCchHHHHHHHhcCCCcchhhHHHHHHcCCCcHHHHHHHHHHHHHHhHHHHHHHHhhc
Confidence 999999999999999999986 4599999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC
Q psy9637 483 QGPN 486 (490)
Q Consensus 483 ~~~~ 486 (490)
.+|.
T Consensus 305 ~~~~ 308 (473)
T COG0362 305 AGPK 308 (473)
T ss_pred CCCC
Confidence 8884
|
|
| >KOG2653|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-86 Score=639.30 Aligned_cols=307 Identities=74% Similarity=1.234 Sum_probs=295.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
.++||+|||+.||.++++|++++||.|.+|||+.++++++.+...++.+|.++.|++|++..|++|++|+++|+++.+|+
T Consensus 6 ~~digLiGLaVMGqnLiLN~~d~Gf~v~~yNRT~skvD~flaneak~~~i~ga~S~ed~v~klk~PR~iillvkAG~pVD 85 (487)
T KOG2653|consen 6 KADIGLIGLAVMGQNLILNIADKGFTVCAYNRTTSKVDEFLANEAKGTKIIGAYSLEDFVSKLKKPRVIILLVKAGAPVD 85 (487)
T ss_pred ccchhhhhHhhhhhhhhhcccccCceEEEeccchHhHHHHHHHhhcCCcccCCCCHHHHHHhcCCCcEEEEEeeCCCcHH
Confidence 47899999999999999999999999999999999999999877767778899999999999999999999999999999
Q ss_pred HHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCCCccccccCCccCCCCCcchHHHHHHHHHhhCC
Q psy9637 84 DFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGGEDGARYGPSLMPGGNPAAWPALKPIFQKLNP 163 (490)
Q Consensus 84 ~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg~~~a~~G~~im~GG~~~a~~~v~~ll~~l~~ 163 (490)
..+++|.|+|.+||+|||+||+.|++|.||.+.+.++|+-|+.++||||+++|+.||++|+||++++|..++++|+.+++
T Consensus 86 ~~I~~L~p~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~GVSGGEEGAR~GPSlMpGg~~~Awp~ik~ifq~iaa 165 (487)
T KOG2653|consen 86 QFIEELVPYLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSGVSGGEEGARYGPSLMPGGSKEAWPHIKDIFQKIAA 165 (487)
T ss_pred HHHHHHHhhcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecCccCcccccccCCccCCCCChHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999997754
Q ss_pred ceeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhcccchhhHhHhHhHHhhc
Q psy9637 164 SFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGGCIIRSVFLGNIKAAFD 243 (490)
Q Consensus 164 ~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~~~v~~i~~~g~~~~s~~l~~i~~~~~ 243 (490)
++
T Consensus 166 kv------------------------------------------------------------------------------ 167 (487)
T KOG2653|consen 166 KV------------------------------------------------------------------------------ 167 (487)
T ss_pred Hh------------------------------------------------------------------------------
Confidence 20
Q ss_pred cCcccccccCChhHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhCCChhhhHHHHHHhhcccccccccCC
Q psy9637 244 KNPALSNLLLDPFFKDAIHATQSSWRAVVSQSALLGIPTPAFATALAFYDGYRSKRLPANLLQAQRDYFGAHTYELLAAP 323 (490)
Q Consensus 244 ~~~~~~~~~~~~~f~~~l~~~~kDl~~~~~~A~~~gv~~P~~~aa~~~~~~~~~~g~~~~~~~a~rd~fgah~~~r~~~~ 323 (490)
T Consensus 168 -------------------------------------------------------------------------------- 167 (487)
T KOG2653|consen 168 -------------------------------------------------------------------------------- 167 (487)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCceeecccCCCCCCccccCCCCCcceeecCCCCcchhHHhhhhHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhcc
Q psy9637 324 GKFVHTNWTGHGGNSIAAKVGSEPCCDWVGEQGAGHFVKMVHNGIEYGDMQLICEAYHLMTGALGMSHDEMSAVFEDWNK 403 (490)
Q Consensus 324 ~~~~h~~w~~~~~~~~~a~~~~~~c~~~~g~~g~gh~vkmvhngiey~~m~~~~E~~~~~~~~~~~~~~~~~~~~~~w~~ 403 (490)
.+++|||.|+|++||||||||||||||||+||+|+|+|++|+..+|+|++||+++|+.||+
T Consensus 168 -------------------~~~epCc~wvG~~GaGhfVKMVHNGIEYGDMqLI~EaY~vlk~~~gls~~eia~vF~~WN~ 228 (487)
T KOG2653|consen 168 -------------------SDGEPCCDWVGEGGAGHFVKMVHNGIEYGDMQLICEAYDVLKSVLGLSNDEIAEVFDDWNK 228 (487)
T ss_pred -------------------cCCCCCeeeecCCCCccchhhhccCcccchHHHHHHHHHHHHHhcCCcHHHHHHHHHhhcc
Confidence 2568999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhHHHHHHHHHhcccCCCCCcchhhhccccCCCcchHHHHHHHHhcCCCchhhHHHHHHHhhccCchHHHHHHhhcC
Q psy9637 404 GELDSFLIEITKDILKFKDTDGAPLVEKIKDYAGQKGTGKWTAISALDYGVPVTLIGESVFSRCLSSLFDERQKASQVLQ 483 (490)
Q Consensus 404 g~~~s~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~g~g~w~~~~a~~~~~p~~~i~~a~~~r~~s~~~~~r~~~~~~~~ 483 (490)
|+|.|||+|||.+||+.+|.+|+|++|+|+|.++|||||+|||+.|+|+|+|+|+|.+|||+|++|..|++|..+|++|.
T Consensus 229 geleSfLieIT~dIlk~~d~~G~~lv~kI~D~aGqKGTGkwt~~~Ale~g~Pv~lI~eavfaRclS~lKdeR~~ask~L~ 308 (487)
T KOG2653|consen 229 GELESFLIEITADILKFKDEDGKPLVDKILDKAGQKGTGKWTVISALELGVPVTLIGEAVFARCLSALKDERVRASKVLK 308 (487)
T ss_pred cchhHHHHHHhHHHhheeccCCChHHHHHHhhhcCCCccHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999998999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC
Q psy9637 484 GPNP 487 (490)
Q Consensus 484 ~~~~ 487 (490)
+|..
T Consensus 309 gp~~ 312 (487)
T KOG2653|consen 309 GPGV 312 (487)
T ss_pred CCCC
Confidence 9864
|
|
| >COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-79 Score=570.33 Aligned_cols=283 Identities=43% Similarity=0.714 Sum_probs=262.1
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
|+||+||||+||.+|++||.+.||+|++||+|++.++++...++. .++|+.++++.|..|++||+|||++..+++
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~~ga~-----~a~sl~el~~~L~~pr~vWlMvPag~it~~ 75 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKDEGAT-----GAASLDELVAKLSAPRIVWLMVPAGDITDA 75 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHHhcCCc-----cccCHHHHHHhcCCCcEEEEEccCCCchHH
Confidence 589999999999999999999999999999999999999988754 689999999999999999999999999999
Q ss_pred HHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCCCccccccCCccCCCCCcchHHHHHHHHHhhCCc
Q psy9637 85 FIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGGEDGARYGPSLMPGGNPAAWPALKPIFQKLNPS 164 (490)
Q Consensus 85 vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg~~~a~~G~~im~GG~~~a~~~v~~ll~~l~~~ 164 (490)
+++++.+.|++||+|||.+|++|++++++.+.++++|++|+|+++|||+++++.|.|+|+|||++++++++|+|++++.
T Consensus 76 vi~~la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~flD~GTSGG~~G~~~G~~lMiGG~~~a~~~~~pif~~lA~- 154 (300)
T COG1023 76 VIDDLAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIHFLDVGTSGGVWGAERGYCLMIGGDEEAVERLEPIFKALAP- 154 (300)
T ss_pred HHHHHHhhcCCCCEEEECCccchHHHHHHHHHHHhcCCeEEeccCCCCchhhhcCceEEecCcHHHHHHHHHHHHhhCc-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999998764
Q ss_pred eeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhcccchhhHhHhHhHHhhcc
Q psy9637 165 FETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGGCIIRSVFLGNIKAAFDK 244 (490)
Q Consensus 165 ~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~~~v~~i~~~g~~~~s~~l~~i~~~~~~ 244 (490)
|+
T Consensus 155 ----ge-------------------------------------------------------------------------- 156 (300)
T COG1023 155 ----GE-------------------------------------------------------------------------- 156 (300)
T ss_pred ----Cc--------------------------------------------------------------------------
Confidence 11
Q ss_pred CcccccccCChhHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhCCChhhhHHHHHHhhcccccccccCCC
Q psy9637 245 NPALSNLLLDPFFKDAIHATQSSWRAVVSQSALLGIPTPAFATALAFYDGYRSKRLPANLLQAQRDYFGAHTYELLAAPG 324 (490)
Q Consensus 245 ~~~~~~~~~~~~f~~~l~~~~kDl~~~~~~A~~~gv~~P~~~aa~~~~~~~~~~g~~~~~~~a~rd~fgah~~~r~~~~~ 324 (490)
T Consensus 157 -------------------------------------------------------------------------------- 156 (300)
T COG1023 157 -------------------------------------------------------------------------------- 156 (300)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CceeecccCCCCCCccccCCCCCcceeecCCCCcchhHHhhhhHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhccC
Q psy9637 325 KFVHTNWTGHGGNSIAAKVGSEPCCDWVGEQGAGHFVKMVHNGIEYGDMQLICEAYHLMTGALGMSHDEMSAVFEDWNKG 404 (490)
Q Consensus 325 ~~~h~~w~~~~~~~~~a~~~~~~c~~~~g~~g~gh~vkmvhngiey~~m~~~~E~~~~~~~~~~~~~~~~~~~~~~w~~g 404 (490)
.++.||||.|||||||||||||||||||+|||+|+||+. ..+ +.|+.+|.+.||+|
T Consensus 157 ----------------------~Gyl~~Gp~GsGHfvKMVHNGIEYGmM~a~aEGfelL~~-s~f-D~D~~~VA~vW~hG 212 (300)
T COG1023 157 ----------------------DGYLYCGPSGSGHFVKMVHNGIEYGMMQAIAEGFELLKN-SPF-DYDLEAVAEVWNHG 212 (300)
T ss_pred ----------------------CccccccCCCcchhHHHHhccHHHHHHHHHHHHHHHHHh-CCC-CCCHHHHHHHHhCc
Confidence 124589999999999999999999999999999999997 444 34999999999999
Q ss_pred c-chhHHHHHHHHHhcccCCCCCcchhhhccccCCCcchHHHHHHHHhcCCCchhhHHHHHHHhhccCchHHHHHHhhc
Q psy9637 405 E-LDSFLIEITKDILKFKDTDGAPLVEKIKDYAGQKGTGKWTAISALDYGVPVTLIGESVFSRCLSSLFDERQKASQVL 482 (490)
Q Consensus 405 ~-~~s~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~g~g~w~~~~a~~~~~p~~~i~~a~~~r~~s~~~~~r~~~~~~~ 482 (490)
| |+|||||+|+.+|++ | +.||.|.+++.++|||||||++|+|++||+|+|+.||++||.|...+. ...|++
T Consensus 213 SVIrSWLldLt~~Af~~-d----~~L~q~~g~v~dSGEGrWTv~~aldlgvpaPVia~al~~Rf~S~~~d~--f~~kvl 284 (300)
T COG1023 213 SVIRSWLLDLTAEAFKK-D----PDLDQISGRVSDSGEGRWTVEEALDLGVPAPVIALALMMRFRSRQDDT--FAGKVL 284 (300)
T ss_pred chHHHHHHHHHHHHHhh-C----CCHHHhcCeeccCCCceeehHHHHhcCCCchHHHHHHHHHHhccchhh--HHHHHH
Confidence 9 999999999999994 4 679999999999999999999999999999999999999999965533 444444
|
|
| >PTZ00142 6-phosphogluconate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-73 Score=599.76 Aligned_cols=304 Identities=59% Similarity=0.974 Sum_probs=284.8
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccC-CCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAK-GTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~-~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
++|||||+|.||.+||+||+++||+|++|||++++++.+.+.+.. +..+..+++++++++.|+++|+||+|||++++++
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~v~ 81 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGNTRVKGYHTLEELVNSLKKPRKVILLIKAGEAVD 81 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcCCcceecCCHHHHHhcCCCCCEEEEEeCChHHHH
Confidence 589999999999999999999999999999999999999875322 2234578999999998888999999999999999
Q ss_pred HHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCCCccccccCCccCCCCCcchHHHHHHHHHhhCC
Q psy9637 84 DFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGGEDGARYGPSLMPGGNPAAWPALKPIFQKLNP 163 (490)
Q Consensus 84 ~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg~~~a~~G~~im~GG~~~a~~~v~~ll~~l~~ 163 (490)
++++++.+.|.+|++|||+||+.|.++.++.+.+.++|++|+|+|||||+++|++|+++|+||++++|++++|+|+.+++
T Consensus 82 ~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSGG~~gA~~G~~lm~GG~~~a~~~~~piL~~ia~ 161 (470)
T PTZ00142 82 ETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSGGEEGARYGPSLMPGGNKEAYDHVKDILEKCSA 161 (470)
T ss_pred HHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCCCHHHHhcCCEEEEeCCHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998764
Q ss_pred ceeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhcccchhhHhHhHhHHhhc
Q psy9637 164 SFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGGCIIRSVFLGNIKAAFD 243 (490)
Q Consensus 164 ~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~~~v~~i~~~g~~~~s~~l~~i~~~~~ 243 (490)
+
T Consensus 162 ~------------------------------------------------------------------------------- 162 (470)
T PTZ00142 162 K------------------------------------------------------------------------------- 162 (470)
T ss_pred h-------------------------------------------------------------------------------
Confidence 1
Q ss_pred cCcccccccCChhHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhCCChhhhHHHHHHhhcccccccccCC
Q psy9637 244 KNPALSNLLLDPFFKDAIHATQSSWRAVVSQSALLGIPTPAFATALAFYDGYRSKRLPANLLQAQRDYFGAHTYELLAAP 323 (490)
Q Consensus 244 ~~~~~~~~~~~~~f~~~l~~~~kDl~~~~~~A~~~gv~~P~~~aa~~~~~~~~~~g~~~~~~~a~rd~fgah~~~r~~~~ 323 (490)
T Consensus 163 -------------------------------------------------------------------------------- 162 (470)
T PTZ00142 163 -------------------------------------------------------------------------------- 162 (470)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCceeecccCCCCCCccccCCCCCcceeecCCCCcchhHHhhhhHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhcc
Q psy9637 324 GKFVHTNWTGHGGNSIAAKVGSEPCCDWVGEQGAGHFVKMVHNGIEYGDMQLICEAYHLMTGALGMSHDEMSAVFEDWNK 403 (490)
Q Consensus 324 ~~~~h~~w~~~~~~~~~a~~~~~~c~~~~g~~g~gh~vkmvhngiey~~m~~~~E~~~~~~~~~~~~~~~~~~~~~~w~~ 403 (490)
++++||+.|+|+.|+|||||||||+|||++||+++|+|.|+++..|++++++.++|+.||+
T Consensus 163 -------------------~~~~~~~~~~G~~GaGh~vKmvhN~ie~~~m~~iaEa~~l~~~~~gl~~~~l~~v~~~w~~ 223 (470)
T PTZ00142 163 -------------------VGDSPCVTYVGPGSSGHYVKMVHNGIEYGDMQLISESYKLMKHILGMSNEELSEVFNKWNE 223 (470)
T ss_pred -------------------cCCCCeEEEECCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHcC
Confidence 2357999999999999999999999999999999999999986589999999999999999
Q ss_pred CcchhHHHHHHHHHhcccCCCC-CcchhhhccccCCCcchHHHHHHHHhcCCCchhhHHHHHHHhhccCchHHHHHHhhc
Q psy9637 404 GELDSFLIEITKDILKFKDTDG-APLVEKIKDYAGQKGTGKWTAISALDYGVPVTLIGESVFSRCLSSLFDERQKASQVL 482 (490)
Q Consensus 404 g~~~s~l~~~~~~~~~~~~~~~-~~~l~~i~~~~~~~g~g~w~~~~a~~~~~p~~~i~~a~~~r~~s~~~~~r~~~~~~~ 482 (490)
|+++|||+||+.++|+++|++| .|+||.|+|+++|||||+|||+||++++||+|+|++|||+|++|++|++|+..++.+
T Consensus 224 g~~~S~l~ei~~~~~~~~d~~~~~~~l~~i~d~~~~~gtg~wt~~~a~~~~v~~p~i~~a~~~R~~S~~k~~r~~~~~~~ 303 (470)
T PTZ00142 224 GILNSYLIEITAKILAKKDDLGEEHLVDKILDIAGSKGTGKWTVQEALERGIPVPTMAASVDARNISALKEERTKASSHL 303 (470)
T ss_pred CCccCHHHHHHHHHhhcccccCCCcchhhhcCcccCCchHHhHHHHHHHcCCCchHHHHHHHHHHhhhhHHHHHHhcccc
Confidence 9999999999999999887665 799999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC
Q psy9637 483 QGPN 486 (490)
Q Consensus 483 ~~~~ 486 (490)
.+|.
T Consensus 304 ~gp~ 307 (470)
T PTZ00142 304 AGPN 307 (470)
T ss_pred CCCc
Confidence 8874
|
|
| >TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-71 Score=581.04 Aligned_cols=303 Identities=68% Similarity=1.160 Sum_probs=283.8
Q ss_pred cEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHHH
Q psy9637 6 DIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDDF 85 (490)
Q Consensus 6 ~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~v 85 (490)
+|||||+|.||.+||+||+++||+|++|||++++++.+.+.+..+..+..+.+++++++.+++||+||+|||++.+++++
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~v~~V 80 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKAGAPVDAV 80 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCCcHHHHHH
Confidence 59999999999999999999999999999999999999875322223456889999999888899999999999999999
Q ss_pred HHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCCCccccccCCccCCCCCcchHHHHHHHHHhhCCce
Q psy9637 86 IDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGGEDGARYGPSLMPGGNPAAWPALKPIFQKLNPSF 165 (490)
Q Consensus 86 l~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg~~~a~~G~~im~GG~~~a~~~v~~ll~~l~~~~ 165 (490)
++++.+.+++|++|||+||+.|.++.++.+.+.++|++|+|+|||||+++|++|+++|+||++++|++++|+|+.++.+
T Consensus 81 i~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapVsGG~~gA~~G~~im~GG~~~a~~~~~p~L~~ia~~- 159 (467)
T TIGR00873 81 INQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGVSGGEEGARKGPSIMPGGSAEAWPLVAPIFQKIAAK- 159 (467)
T ss_pred HHHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCCCCCHHHHhcCCcCCCCCCHHHHHHHHHHHHHHhhh-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999987642
Q ss_pred eeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhcccchhhHhHhHhHHhhccC
Q psy9637 166 ETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGGCIIRSVFLGNIKAAFDKN 245 (490)
Q Consensus 166 ~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~~~v~~i~~~g~~~~s~~l~~i~~~~~~~ 245 (490)
T Consensus 160 -------------------------------------------------------------------------------- 159 (467)
T TIGR00873 160 -------------------------------------------------------------------------------- 159 (467)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccCChhHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhCCChhhhHHHHHHhhcccccccccCCCC
Q psy9637 246 PALSNLLLDPFFKDAIHATQSSWRAVVSQSALLGIPTPAFATALAFYDGYRSKRLPANLLQAQRDYFGAHTYELLAAPGK 325 (490)
Q Consensus 246 ~~~~~~~~~~~f~~~l~~~~kDl~~~~~~A~~~gv~~P~~~aa~~~~~~~~~~g~~~~~~~a~rd~fgah~~~r~~~~~~ 325 (490)
T Consensus 160 -------------------------------------------------------------------------------- 159 (467)
T TIGR00873 160 -------------------------------------------------------------------------------- 159 (467)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceeecccCCCCCCccccCCCCCcceeecCCCCcchhHHhhhhHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhccCc
Q psy9637 326 FVHTNWTGHGGNSIAAKVGSEPCCDWVGEQGAGHFVKMVHNGIEYGDMQLICEAYHLMTGALGMSHDEMSAVFEDWNKGE 405 (490)
Q Consensus 326 ~~h~~w~~~~~~~~~a~~~~~~c~~~~g~~g~gh~vkmvhngiey~~m~~~~E~~~~~~~~~~~~~~~~~~~~~~w~~g~ 405 (490)
++++||+.|+||.|+|||||||||+|||++||+++|+|.||++..|++++++.++|+.||+|.
T Consensus 160 -----------------~~~~~~~~~~G~~GsG~~vKmvhN~i~~~~m~~~aEa~~ll~~~~g~~~~~l~~v~~~w~~~~ 222 (467)
T TIGR00873 160 -----------------VDGEPCCTWIGPDGAGHYVKMVHNGIEYGDMQLICEAYDILKDGLGLSNEEIAEVFTEWNNGE 222 (467)
T ss_pred -----------------cCCCCceEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhcCCc
Confidence 235699999999999999999999999999999999999997668999999999999999988
Q ss_pred chhHHHHHHHHHhcccCCCCCcchhhhccccCCCcchHHHHHHHHhcCCCchhhHHHHHHHhhccCchHHHHHHhhcCCC
Q psy9637 406 LDSFLIEITKDILKFKDTDGAPLVEKIKDYAGQKGTGKWTAISALDYGVPVTLIGESVFSRCLSSLFDERQKASQVLQGP 485 (490)
Q Consensus 406 ~~s~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~g~g~w~~~~a~~~~~p~~~i~~a~~~r~~s~~~~~r~~~~~~~~~~ 485 (490)
++|||+|++.++|++||++|.|+||.|+|+++|||||+|||+||++++||+|+|++|+++|+.|.+|++|...++.+.+|
T Consensus 223 ~~S~l~~~~~~~~~~~d~~~~~~l~~i~~~~~~~gtg~wt~~~a~~~~v~~p~i~~av~~R~~S~~k~~r~~~~~~~~gp 302 (467)
T TIGR00873 223 LDSYLIEITADILKKKDEDGKPLVDKILDTAGQKGTGKWTAISALDLGVPVTLITESVFARYLSSLKEERVAASKVLSGP 302 (467)
T ss_pred ccchHHHhHHHHHhccCCCCCccHHhhcCcccCccHHHHHHHHHHHcCCCchHHHHHHHHHhccccHHHHHHhhcccCCC
Confidence 99999999999999888878899999999999999999999999999999999999999999999999999999999877
Q ss_pred C
Q psy9637 486 N 486 (490)
Q Consensus 486 ~ 486 (490)
.
T Consensus 303 ~ 303 (467)
T TIGR00873 303 L 303 (467)
T ss_pred C
Confidence 4
|
This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason. |
| >PRK09287 6-phosphogluconate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-70 Score=575.41 Aligned_cols=294 Identities=60% Similarity=1.013 Sum_probs=276.7
Q ss_pred HHHHHHHHHHHCCCeEEEEeCChHHHHHHHHc-ccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHHHHHhhcccC
Q psy9637 15 MGQNLILNMNDHGFTVVAYNRTTAKVDSFLAN-EAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDDFIDKLVPLL 93 (490)
Q Consensus 15 MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~-g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~vl~~l~~~l 93 (490)
||.+||+||+++||+|++|||++++++.+.+. +. +.++..+.|++++++++++||+||+|||++.++++|++++++.|
T Consensus 1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~~g~-~~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~Vi~~l~~~l 79 (459)
T PRK09287 1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAEEGK-GKKIVPAYTLEEFVASLEKPRKILLMVKAGAPVDAVIEQLLPLL 79 (459)
T ss_pred CcHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhCC-CCCeEeeCCHHHHHhhCCCCCEEEEECCCchHHHHHHHHHHhcC
Confidence 89999999999999999999999999999874 32 23356899999999999889999999999999999999999999
Q ss_pred CCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCCCccccccCCccCCCCCcchHHHHHHHHHhhCCceeeCCCCCC
Q psy9637 94 EKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGGEDGARYGPSLMPGGNPAAWPALKPIFQKLNPSFETSAPTPK 173 (490)
Q Consensus 94 ~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg~~~a~~G~~im~GG~~~a~~~v~~ll~~l~~~~~~~g~~g~ 173 (490)
.+|++|||+||+.|.++.++.+.++++|++|+|+|||||+++|++|+++|+||++++|++++|+|+.++.++
T Consensus 80 ~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~fvdapVSGG~~gA~~G~siM~GG~~~a~~~~~piL~~ia~~~-------- 151 (459)
T PRK09287 80 EKGDIIIDGGNSNYKDTIRREKELAEKGIHFIGMGVSGGEEGALHGPSIMPGGQKEAYELVAPILEKIAAKV-------- 151 (459)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHhcCCeEEecCCCCCHHHHhcCCEEEEeCCHHHHHHHHHHHHHHhhhh--------
Confidence 999999999999999999999999999999999999999999999999999999999999999999876420
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhcccchhhHhHhHhHHhhccCcccccccC
Q psy9637 174 PQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGGCIIRSVFLGNIKAAFDKNPALSNLLL 253 (490)
Q Consensus 174 ~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~~~v~~i~~~g~~~~s~~l~~i~~~~~~~~~~~~~~~ 253 (490)
T Consensus 152 -------------------------------------------------------------------------------- 151 (459)
T PRK09287 152 -------------------------------------------------------------------------------- 151 (459)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhCCChhhhHHHHHHhhcccccccccCCCCceeecccC
Q psy9637 254 DPFFKDAIHATQSSWRAVVSQSALLGIPTPAFATALAFYDGYRSKRLPANLLQAQRDYFGAHTYELLAAPGKFVHTNWTG 333 (490)
Q Consensus 254 ~~~f~~~l~~~~kDl~~~~~~A~~~gv~~P~~~aa~~~~~~~~~~g~~~~~~~a~rd~fgah~~~r~~~~~~~~h~~w~~ 333 (490)
T Consensus 152 -------------------------------------------------------------------------------- 151 (459)
T PRK09287 152 -------------------------------------------------------------------------------- 151 (459)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCccccCCCCCcceeecCCCCcchhHHhhhhHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhccCcchhHHHHH
Q psy9637 334 HGGNSIAAKVGSEPCCDWVGEQGAGHFVKMVHNGIEYGDMQLICEAYHLMTGALGMSHDEMSAVFEDWNKGELDSFLIEI 413 (490)
Q Consensus 334 ~~~~~~~a~~~~~~c~~~~g~~g~gh~vkmvhngiey~~m~~~~E~~~~~~~~~~~~~~~~~~~~~~w~~g~~~s~l~~~ 413 (490)
.+|+|||.|+||.|+|||||||||+|||++||+|+|+|.|+++.+|++++++.++|+.||+|+++|||+|+
T Consensus 152 ---------~~g~~c~~~vG~~GaGh~vKmvhN~ie~~~mq~iaEa~~l~~~~~Gl~~~~l~~v~~~wn~g~~~S~l~ei 222 (459)
T PRK09287 152 ---------EDGEPCVTYIGPDGAGHYVKMVHNGIEYGDMQLIAEAYDLLKDGLGLSAEEIADVFAEWNKGELNSYLIEI 222 (459)
T ss_pred ---------cCCCCceeeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhcCCCccChHHHh
Confidence 14679999999999999999999999999999999999999965899999999999999999999999999
Q ss_pred HHHHhcccCC-CCCcchhhhccccCCCcchHHHHHHHHhcCCCchhhHHHHHHHhhccCchHHHHHHhhcCCCC
Q psy9637 414 TKDILKFKDT-DGAPLVEKIKDYAGQKGTGKWTAISALDYGVPVTLIGESVFSRCLSSLFDERQKASQVLQGPN 486 (490)
Q Consensus 414 ~~~~~~~~~~-~~~~~l~~i~~~~~~~g~g~w~~~~a~~~~~p~~~i~~a~~~r~~s~~~~~r~~~~~~~~~~~ 486 (490)
+.+++.++|. +|.|+||+|+|+++|||||+||+++|+++|||+|+|++|+|+|+.|.+|++|+..++.+.+|.
T Consensus 223 ~~~~l~~~d~~~~~~~~d~i~d~~~~~gtg~Wt~~~a~~~~v~~~~i~~AvfaR~~S~~k~~r~~~~~~~~g~~ 296 (459)
T PRK09287 223 TADILRQKDEETGKPLVDVILDKAGQKGTGKWTSQSALDLGVPLTLITEAVFARYLSSLKDQRVAASKVLSGPA 296 (459)
T ss_pred HhHHHhcCCCCCCCcchHHhcCcccCCcHHHHHHHHHHHhCCChHHHHHHHHHHhccccHHHHHHhhcccCCCC
Confidence 9999998775 678999999999999999999999999999999999999999999999999999999998874
|
|
| >PLN02350 phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-66 Score=546.89 Aligned_cols=305 Identities=51% Similarity=0.850 Sum_probs=282.4
Q ss_pred CCCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccC-C-CCeeccCCHHHHHhhCCCCcEEEEecCCCc
Q psy9637 3 AKGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAK-G-TNIIGAHSLEELVKNLKKPRRVMMLVKAGS 80 (490)
Q Consensus 3 ~~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~-~-~~i~~~~s~~e~v~~l~~~dvIil~vp~~~ 80 (490)
.+++|||||||.||.+||+||+++||+|++|||++++++.+.+.+.. + ..+..+.|++|++++|++||+||+|||+++
T Consensus 5 ~~~~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~~~~ 84 (493)
T PLN02350 5 ALSRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVKAGA 84 (493)
T ss_pred CCCCEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEECCCcH
Confidence 45789999999999999999999999999999999999999874211 1 123468899999999999999999999999
Q ss_pred hHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCCCccccccCCccCCCCCcchHHHHHHHHHh
Q psy9637 81 AVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGGEDGARYGPSLMPGGNPAAWPALKPIFQK 160 (490)
Q Consensus 81 ~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg~~~a~~G~~im~GG~~~a~~~v~~ll~~ 160 (490)
++++|++++++.+.+|++|||+||+.|.++.++.+.++++|++|+|+|||||+.+|+.|+++|+||++++|++++|+|+.
T Consensus 85 aV~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG~~gA~~G~~im~GG~~~a~~~v~pvL~~ 164 (493)
T PLN02350 85 PVDQTIKALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGGEEGARNGPSLMPGGSFEAYKNIEDILEK 164 (493)
T ss_pred HHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCCHHHhcCCCeEEecCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hCCceeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhcccchhhHhHhHhHH
Q psy9637 161 LNPSFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGGCIIRSVFLGNIKA 240 (490)
Q Consensus 161 l~~~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~~~v~~i~~~g~~~~s~~l~~i~~ 240 (490)
++++
T Consensus 165 ia~k---------------------------------------------------------------------------- 168 (493)
T PLN02350 165 VAAQ---------------------------------------------------------------------------- 168 (493)
T ss_pred Hhhh----------------------------------------------------------------------------
Confidence 7642
Q ss_pred hhccCcccccccCChhHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhCCChhhhHHHHHHhhcccccccc
Q psy9637 241 AFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSALLGIPTPAFATALAFYDGYRSKRLPANLLQAQRDYFGAHTYELL 320 (490)
Q Consensus 241 ~~~~~~~~~~~~~~~~f~~~l~~~~kDl~~~~~~A~~~gv~~P~~~aa~~~~~~~~~~g~~~~~~~a~rd~fgah~~~r~ 320 (490)
T Consensus 169 -------------------------------------------------------------------------------- 168 (493)
T PLN02350 169 -------------------------------------------------------------------------------- 168 (493)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCceeecccCCCCCCccccCCCCCcceeecCCCCcchhHHhhhhHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHH
Q psy9637 321 AAPGKFVHTNWTGHGGNSIAAKVGSEPCCDWVGEQGAGHFVKMVHNGIEYGDMQLICEAYHLMTGALGMSHDEMSAVFED 400 (490)
Q Consensus 321 ~~~~~~~h~~w~~~~~~~~~a~~~~~~c~~~~g~~g~gh~vkmvhngiey~~m~~~~E~~~~~~~~~~~~~~~~~~~~~~ 400 (490)
.+++||+.|+|+.|+|||||||||+|||++||+++|+|.++++.+|++++++.++|+.
T Consensus 169 ----------------------~~~~~~v~~vG~~GaG~~vKlv~N~i~~~~m~~iaEA~~l~~~~~Gld~~~l~~vf~~ 226 (493)
T PLN02350 169 ----------------------VDDGPCVTYIGPGGAGNFVKMVHNGIEYGDMQLISEAYDVLKSVGGLSNEELAEVFAE 226 (493)
T ss_pred ----------------------cCCCCcEEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence 2456899999999999999999999999999999999999997569999999999999
Q ss_pred hccCcchhHHHHHHHHHhcccCC-CCCcchhhhccccCCCcchHHHHHHHHhcCCCchhhHHHHHHHhhccCchHHHHHH
Q psy9637 401 WNKGELDSFLIEITKDILKFKDT-DGAPLVEKIKDYAGQKGTGKWTAISALDYGVPVTLIGESVFSRCLSSLFDERQKAS 479 (490)
Q Consensus 401 w~~g~~~s~l~~~~~~~~~~~~~-~~~~~l~~i~~~~~~~g~g~w~~~~a~~~~~p~~~i~~a~~~r~~s~~~~~r~~~~ 479 (490)
||.|+++|||+|++.+++..+|+ ...+.+|.|.|.++|||||+|++++|.++|+|+|+|++|+++|+.|++|++|+.++
T Consensus 227 ~~~g~~~S~llei~~~~l~~~d~~~~~f~l~~i~Kd~~~kGTg~w~~~~A~~lgv~~p~i~~av~~r~~s~~k~~r~~~~ 306 (493)
T PLN02350 227 WNKGELESFLIEITADIFSVKDDKGDGYLVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDARYLSGLKEERVAAA 306 (493)
T ss_pred HcCCCccchHHHHHHHHHhhcCCCCCCchHHHHHhhhcccchHHHHHHHHHHhCCCccHHHHHHHHHHHhccHHHHHHHH
Confidence 99999999999999999987652 32479999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCC
Q psy9637 480 QVLQGP 485 (490)
Q Consensus 480 ~~~~~~ 485 (490)
++|++|
T Consensus 307 ~~~~~~ 312 (493)
T PLN02350 307 KVFKEA 312 (493)
T ss_pred hhcCCC
Confidence 999876
|
|
| >TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-51 Score=411.84 Aligned_cols=294 Identities=32% Similarity=0.577 Sum_probs=269.4
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
|+|||||+|.||.+||++|+++||+|.+|||++++++.+.+.+.. .+.+++++++.++.+|+||+|||++ .+++
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g~~-----~~~s~~~~~~~~~~~dvIi~~vp~~-~~~~ 74 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDRTT-----GVANLRELSQRLSAPRVVWVMVPHG-IVDA 74 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCc-----ccCCHHHHHhhcCCCCEEEEEcCch-HHHH
Confidence 479999999999999999999999999999999999999876543 4678888888777799999999998 9999
Q ss_pred HHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCCCccccccCCccCCCCCcchHHHHHHHHHhhCC-
Q psy9637 85 FIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGGEDGARYGPSLMPGGNPAAWPALKPIFQKLNP- 163 (490)
Q Consensus 85 vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg~~~a~~G~~im~GG~~~a~~~v~~ll~~l~~- 163 (490)
+++++.+.+++|++|||+||+.|.++.++.+.++++|++|+|+||+||+.+++.|.++|+||+++++++++|+|+.++.
T Consensus 75 v~~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~vda~vsGg~~~a~~G~~~~~gG~~~~~~~~~~~l~~~~~~ 154 (298)
T TIGR00872 75 VLEELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLDCGTSGGVWGRERGYCFMIGGDGEAFARAEPLFADVAPE 154 (298)
T ss_pred HHHHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCeEEecCCCCCHHHHhcCCeeeeCCCHHHHHHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred --ceeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhcccchhhHhHhHhHHh
Q psy9637 164 --SFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGGCIIRSVFLGNIKAA 241 (490)
Q Consensus 164 --~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~~~v~~i~~~g~~~~s~~l~~i~~~ 241 (490)
.++|+|+.| .++++|+++|++.++.+.+++|++.+++++ +||+|+++++++|+.||+++|++++.+..+
T Consensus 155 ~~~~~~~G~~G-----~~~~~K~~~n~l~~~~~~~~aE~~~l~~~~----g~~ld~~~~~~i~~~g~~~~s~~l~~~~~~ 225 (298)
T TIGR00872 155 EQGYLYCGPCG-----SGHFVKMVHNGIEYGMMAAIAEGFEILRNS----QFDFDIPEVARVWRRGSVIRSWLLDLTAIA 225 (298)
T ss_pred CCCEEEECCcc-----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHc----CCCcCHHHHHHHHcCCchhHhHHHHHHHHH
Confidence 588999876 578999999999999999999999999998 889999999999999999999999999999
Q ss_pred hccCcccccccCChhHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhC-CChhhhHHHHHHhhcccccccc
Q psy9637 242 FDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSALLGIPTPAFATALAFYDGYRSK-RLPANLLQAQRDYFGAHTYELL 320 (490)
Q Consensus 242 ~~~~~~~~~~~~~~~f~~~l~~~~kDl~~~~~~A~~~gv~~P~~~aa~~~~~~~~~~-g~~~~~~~a~rd~fgah~~~r~ 320 (490)
+.+++.+.+ |...+ ...+|.++++..|.+.|+|+|.+++++.++...... .+|.|++|+||||||+|+|+++
T Consensus 226 ~~~~~~~~~------~~~~~-~~~~~~r~~v~~a~~~g~p~P~~~~al~~~~~~~~~~~~~~~~~~~~r~~fg~h~~~~~ 298 (298)
T TIGR00872 226 FRESPDLAE------FSGRV-SDSGEGRWTVIAAIDLGVPAPVIATSLQSRFASRDLDDFANKVLAALRKEFGGHAEKKK 298 (298)
T ss_pred HhcCCcHHH------HHHHH-HhhccHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhhCCCCcCCC
Confidence 988764332 44332 356778999999999999999999999988888888 8999999999999999999873
|
This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle. |
| >COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-51 Score=400.76 Aligned_cols=280 Identities=26% Similarity=0.347 Sum_probs=262.2
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHH-HHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAK-VDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~-~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
+||||||||.||.+||.||.++||+|++|||++++ .+.+.+.|.. .+.++.|+++. +|+||+|||++.+++
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~Ga~-----~a~s~~eaa~~---aDvVitmv~~~~~V~ 72 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGAT-----VAASPAEAAAE---ADVVITMLPDDAAVR 72 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcCCc-----ccCCHHHHHHh---CCEEEEecCCHHHHH
Confidence 48999999999999999999999999999999999 6666666764 68999999998 999999999999999
Q ss_pred HHH---HhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCCCccccccCC-ccCCCCCcchHHHHHHHHH
Q psy9637 84 DFI---DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGGEDGARYGP-SLMPGGNPAAWPALKPIFQ 159 (490)
Q Consensus 84 ~vl---~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg~~~a~~G~-~im~GG~~~a~~~v~~ll~ 159 (490)
+|+ +++.+.+++|.++||+||+.|..+++..+.++++|++|+|+|||||+.+|.+|+ +||+||++++|++++|+|+
T Consensus 73 ~V~~g~~g~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~~lDAPVsGg~~~A~~GtLtimvGG~~~~f~r~~pvl~ 152 (286)
T COG2084 73 AVLFGENGLLEGLKPGAIVIDMSTISPETARELAAALAAKGLEFLDAPVSGGVPGAAAGTLTIMVGGDAEAFERAKPVLE 152 (286)
T ss_pred HHHhCccchhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCcEEecCccCCchhhhhCceEEEeCCCHHHHHHHHHHHH
Confidence 999 578889999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred hhCCceeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhcccchhhHhHhHhH
Q psy9637 160 KLNPSFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGGCIIRSVFLGNIK 239 (490)
Q Consensus 160 ~l~~~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~~~v~~i~~~g~~~~s~~l~~i~ 239 (490)
.+|.+++|+|+.| .++.+|++||.+.++++++++|++.+++++ |+|++.+.++++++. .+||+++..
T Consensus 153 ~~g~~i~~~G~~G-----~G~~~Kl~nn~l~~~~~~a~aEAl~la~k~------Gld~~~~~~vi~~~~-~~s~~~e~~- 219 (286)
T COG2084 153 AMGKNIVHVGPVG-----AGQAAKLANNILLAGNIAALAEALALAEKA------GLDPDVVLEVISGGA-AGSWILENY- 219 (286)
T ss_pred HhcCceEEECCCC-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCHHHHHHHHhccc-cCChHHHhh-
Confidence 9999999999987 468999999999999999999999999999 999999999999885 789998873
Q ss_pred HhhccCcccccccCChhHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhCCChhhhHHHHHHhh
Q psy9637 240 AAFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSALLGIPTPAFATALAFYDGYRSKRLPANLLQAQRDYF 312 (490)
Q Consensus 240 ~~~~~~~~~~~~~~~~~f~~~l~~~~kDl~~~~~~A~~~gv~~P~~~aa~~~~~~~~~~g~~~~~~~a~rd~f 312 (490)
.+++.+..|+|.| .++++.||++++.+.|++.++++|+.+.+.++|+.+...|++.+|.+++.++|
T Consensus 220 -----~~~m~~~~~~p~F--~v~~~~KDl~la~~~A~~~g~~lP~~~~~~~ly~~~~~~G~g~~D~sal~~~l 285 (286)
T COG2084 220 -----GPRMLEGDFSPGF--AVDLMLKDLGLALDAAKELGAPLPLTALAAELYAKAAAAGGGEEDFSALIKLL 285 (286)
T ss_pred -----cchhhcCCCCcch--hHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhcCCCccChHHHHHHh
Confidence 4677888899987 78999999999999999999999999999999999999999999999887664
|
|
| >PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-50 Score=403.17 Aligned_cols=295 Identities=35% Similarity=0.585 Sum_probs=264.9
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
|+|||||+|.||.+||++|+++||+|++|||++++++.+.+.+. ..+++++++++.++.+|+||+|+|++.++++
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~-----~~~~~~~e~~~~~~~~dvvi~~v~~~~~~~~ 75 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAEEGA-----TGADSLEELVAKLPAPRVVWLMVPAGEITDA 75 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCC-----eecCCHHHHHhhcCCCCEEEEEecCCcHHHH
Confidence 48999999999999999999999999999999999999877654 3678999998876557999999999889999
Q ss_pred HHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCCCccccccCCccCCCCCcchHHHHHHHHHhhCC-
Q psy9637 85 FIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGGEDGARYGPSLMPGGNPAAWPALKPIFQKLNP- 163 (490)
Q Consensus 85 vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg~~~a~~G~~im~GG~~~a~~~v~~ll~~l~~- 163 (490)
+++++.+.+++|++|||+||+.|..+.++.+.++++|++|+|+||+||+.+++.|.++|+||+++++++++|+|+.++.
T Consensus 76 v~~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~~dapvsG~~~~a~~g~~~~~gG~~~~~~~~~~~l~~~~~~ 155 (301)
T PRK09599 76 TIDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIHFVDVGTSGGVWGLERGYCLMIGGDKEAVERLEPIFKALAPR 155 (301)
T ss_pred HHHHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCEEEeCCCCcCHHHHhcCCeEEecCCHHHHHHHHHHHHHHccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ---ceeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhcccchhhHhHhHhHH
Q psy9637 164 ---SFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGGCIIRSVFLGNIKA 240 (490)
Q Consensus 164 ---~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~~~v~~i~~~g~~~~s~~l~~i~~ 240 (490)
+++++|+.| .++.+|+++|++.++.+.+++|++.++++ ++||+|+++++++|+.||+++|++++....
T Consensus 156 ~~~~~~~~G~~G-----~g~~~Kl~~n~l~~~~~~~~aEa~~l~~~----~~~gld~~~~~~~~~~~~~~~s~~l~~~~~ 226 (301)
T PRK09599 156 AEDGYLHAGPVG-----AGHFVKMVHNGIEYGMMQAYAEGFELLEA----SRFDLDLAAVAEVWRRGSVIRSWLLDLTAD 226 (301)
T ss_pred ccCCeEeECCCc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----cCCCCCHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 899999986 57899999999999999999999999999 467999999999999999999999999877
Q ss_pred hhccCcccccccCChhHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHH-HHHHHhCCChhhhHHHHHHhhccccccc
Q psy9637 241 AFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSALLGIPTPAFATALAF-YDGYRSKRLPANLLQAQRDYFGAHTYEL 319 (490)
Q Consensus 241 ~~~~~~~~~~~~~~~~f~~~l~~~~kDl~~~~~~A~~~gv~~P~~~aa~~~-~~~~~~~g~~~~~~~a~rd~fgah~~~r 319 (490)
.+.+++.+ +.+...++. .||++++++.|.+.|+|+|+++++..+ |..+.+.++|.+++|+||||||+|+|+|
T Consensus 227 ~~~~~~~~------~~~~~~~kd-~~~~~~~~~~A~~~~~~~P~~~~a~~~~~~~~~~~~~~~~~~~a~~~~fg~h~~~~ 299 (301)
T PRK09599 227 ALAEDPKL------DEISGYVED-SGEGRWTVEEAIDLAVPAPVIAAALFMRFRSRQEDSFADKVVAALRNGFGGHAVKK 299 (301)
T ss_pred HHhcCCCH------HHHHHHHHh-hCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHhcCCCCccC
Confidence 77544221 112112222 556799999999999999999997776 8899999999999999999999999999
Q ss_pred c
Q psy9637 320 L 320 (490)
Q Consensus 320 ~ 320 (490)
+
T Consensus 300 ~ 300 (301)
T PRK09599 300 K 300 (301)
T ss_pred C
Confidence 6
|
|
| >PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-48 Score=391.08 Aligned_cols=291 Identities=32% Similarity=0.576 Sum_probs=262.7
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
|+|||||+|.||.+||++|.++|++|++|||++++.+.+.+.+. ..+.+++++++.++.+|+||+|||++..+++
T Consensus 1 m~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~-----~~~~s~~~~~~~~~~advVi~~vp~~~~~~~ 75 (299)
T PRK12490 1 MKLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGKLGI-----TARHSLEELVSKLEAPRTIWVMVPAGEVTES 75 (299)
T ss_pred CEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCC-----eecCCHHHHHHhCCCCCEEEEEecCchHHHH
Confidence 47999999999999999999999999999999999998876554 3678999998875557999999999889999
Q ss_pred HHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCCCccccccCCccCCCCCcchHHHHHHHHHhhCC-
Q psy9637 85 FIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGGEDGARYGPSLMPGGNPAAWPALKPIFQKLNP- 163 (490)
Q Consensus 85 vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg~~~a~~G~~im~GG~~~a~~~v~~ll~~l~~- 163 (490)
+++++.+.+++|++|||+||+.|.++.++.+.+.++|++|+|+||+||+.+++.|.++|+||+++++++++|+|+.++.
T Consensus 76 v~~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~vdapV~G~~~~a~~g~~~~~gG~~~~~~~~~~~l~~~~~~ 155 (299)
T PRK12490 76 VIKDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIHYVDCGTSGGVWGLRNGYCLMVGGDKEIYDRLEPVFKALAPE 155 (299)
T ss_pred HHHHHhccCCCCCEEEECCCCCchhHHHHHHHHHHcCCeEEeCCCCCCHHHHhcCCeEEecCCHHHHHHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred --ceeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhcccchhhHhHhHhHHh
Q psy9637 164 --SFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGGCIIRSVFLGNIKAA 241 (490)
Q Consensus 164 --~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~~~v~~i~~~g~~~~s~~l~~i~~~ 241 (490)
+++|+|+.| .++.+|+++|++.++.+.+++|++.+++++ +||+|+++++++|+.+|+++|++++.....
T Consensus 156 ~~~~~~~G~~g-----~a~~~Kl~~n~~~~~~~~~~aEa~~l~~~~----g~~ld~~~~~~~~~~~~~~~s~~l~~~~~~ 226 (299)
T PRK12490 156 GPGYVHAGPVG-----SGHFLKMVHNGIEYGMMQAYAEGLELLDKS----DFDFDVEDVARLWRNGSVIRSWLLDLTVKA 226 (299)
T ss_pred CCcEEEECCcC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----ccCCCHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 789999886 689999999999999999999999999998 367999999999999899999999986655
Q ss_pred hccCcccccccCChhHHHHHHHHHHHH---HHHHHHHHHcCCCchHHHHHH-HHHHHHHhCCChhhhHHHHHHhhccccc
Q psy9637 242 FDKNPALSNLLLDPFFKDAIHATQSSW---RAVVSQSALLGIPTPAFATAL-AFYDGYRSKRLPANLLQAQRDYFGAHTY 317 (490)
Q Consensus 242 ~~~~~~~~~~~~~~~f~~~l~~~~kDl---~~~~~~A~~~gv~~P~~~aa~-~~~~~~~~~g~~~~~~~a~rd~fgah~~ 317 (490)
+..+ . +...++.+.||+ +++++.|.+.|+|+|++++++ .+|......+.+.+++|+|||+||+|+|
T Consensus 227 ~~~~------~----~~~~l~~~~KD~~~~~l~~~~A~~~g~~~P~~~~a~~~~~~~~~~~~~~~~~~~a~~~~f~~~~~ 296 (299)
T PRK12490 227 LAED------P----KLAGIKGYVNDSGEGRWTVEEAIELAVAAPVIAASLFMRFASQEDDSFHMKVVSALRNQFGGHAV 296 (299)
T ss_pred HhhC------C----ChhhhhHHHHhcCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCccCChHHHHHHHHHHhhCCCCC
Confidence 4321 1 123578899998 899999999999999999997 6677777777779999999999999999
Q ss_pred cc
Q psy9637 318 EL 319 (490)
Q Consensus 318 ~r 319 (490)
+.
T Consensus 297 ~~ 298 (299)
T PRK12490 297 KT 298 (299)
T ss_pred CC
Confidence 75
|
|
| >KOG0409|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-48 Score=371.27 Aligned_cols=281 Identities=23% Similarity=0.323 Sum_probs=259.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
+++|||||+|.||.+|+.||.++||+|++|||+.++.+.|.+.|+. .+++|.|+++. +|+||+|||++.+++
T Consensus 35 ~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~~~Ga~-----v~~sPaeVae~---sDvvitmv~~~~~v~ 106 (327)
T KOG0409|consen 35 KTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQEAGAR-----VANSPAEVAED---SDVVITMVPNPKDVK 106 (327)
T ss_pred cceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHHHHhchh-----hhCCHHHHHhh---cCEEEEEcCChHhhH
Confidence 4789999999999999999999999999999999999999999875 79999999998 999999999999999
Q ss_pred HHHH---hhcccCCCCCEE-EcCCCCChHHHHHHHHHHHHccccccccCCCCCccccccCC-ccCCCCCcchHHHHHHHH
Q psy9637 84 DFID---KLVPLLEKGDII-IDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGGEDGARYGP-SLMPGGNPAAWPALKPIF 158 (490)
Q Consensus 84 ~vl~---~l~~~l~~g~ii-Id~s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg~~~a~~G~-~im~GG~~~a~~~v~~ll 158 (490)
+++. +++..+++|... ||+||+.|..+.++.+.+..++.+|+|+|||||..+|+.|. +||+|||++.|+++.|+|
T Consensus 107 ~v~~g~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~~~~~vDAPVSGg~~~A~~G~LtimagGde~~~~~~~~~~ 186 (327)
T KOG0409|consen 107 DVLLGKSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNKGGRFVDAPVSGGVKGAEEGTLTIMAGGDEALFEAASPVF 186 (327)
T ss_pred HHhcCCCcceeeccCCCceEEeccccCHHHHHHHHHHHHhCCCeEEeccccCCchhhhcCeEEEEecCcHHHHHHHHHHH
Confidence 9994 566667788877 99999999999999999999999999999999999999999 999999999999999999
Q ss_pred HhhCCceeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhcccchhhHhHhHh
Q psy9637 159 QKLNPSFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGGCIIRSVFLGNI 238 (490)
Q Consensus 159 ~~l~~~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~~~v~~i~~~g~~~~s~~l~~i 238 (490)
+.++.+++++|..| .++.+|+++|++.+++++.++|++.|+.++ |||..+++++++.|... |+++..
T Consensus 187 ~~mGk~~~~~G~~G-----nG~~~Kl~nnm~~g~~M~g~aEal~la~r~------GLd~~~l~eiln~G~~~-S~~~~~- 253 (327)
T KOG0409|consen 187 KLMGKNVVFLGGVG-----NGQAAKLCNNMLLGSSMVGLAEALALADRL------GLDAKKLLEILNTGRCW-SSMFYN- 253 (327)
T ss_pred HHhcceEEEecccC-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCHHHHHHHHhcCCcc-cHHHhC-
Confidence 99999999999987 467899999999999999999999999999 99999999999987643 434333
Q ss_pred HHhhccCcccccccCChhHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhCCChhhhHHHHHHhh
Q psy9637 239 KAAFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSALLGIPTPAFATALAFYDGYRSKRLPANLLQAQRDYF 312 (490)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~f~~~l~~~~kDl~~~~~~A~~~gv~~P~~~aa~~~~~~~~~~g~~~~~~~a~rd~f 312 (490)
..|.+..++|.|+| .++.+.||++++...+.+.++|+|+.+.+.|+|+...+.|+++.|.+++.+.|
T Consensus 254 -----~~p~m~k~dy~p~f--~~~~m~KDLgla~~~a~~~~~~~P~~slA~qly~~~~a~G~g~~Dfs~V~~~~ 320 (327)
T KOG0409|consen 254 -----PVPGMLKGDYNPGF--ALKLMVKDLGLALNAAESVKVPMPLGSLAHQLYKSMKALGYGDKDFSAVYRAF 320 (327)
T ss_pred -----cCchhhcCCCCCcc--hHHHHHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHhcCCCccccHHHHHHH
Confidence 46777888899998 57789999999999999999999999999999999999999999999998765
|
|
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-45 Score=423.12 Aligned_cols=284 Identities=17% Similarity=0.171 Sum_probs=258.9
Q ss_pred CCCCCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCc
Q psy9637 1 MAAKGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGS 80 (490)
Q Consensus 1 M~~~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~ 80 (490)
|....+|||||+|.||.+||+||+++||+|++|||++++++++.+.|+. .++|+.|+++. +|+||+|||++.
T Consensus 1 ~~~~~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~-----~~~s~~e~a~~---advVi~~l~~~~ 72 (1378)
T PLN02858 1 AQSAGVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFCELGGH-----RCDSPAEAAKD---AAALVVVLSHPD 72 (1378)
T ss_pred CCCCCeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCe-----ecCCHHHHHhc---CCEEEEEcCChH
Confidence 4455789999999999999999999999999999999999999987753 68999999987 899999999999
Q ss_pred hHHHHH---HhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcc--ccccccCCCCCccccccCC-ccCCCCCcchHHHH
Q psy9637 81 AVDDFI---DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKG--LLYVGCGVSGGEDGARYGP-SLMPGGNPAAWPAL 154 (490)
Q Consensus 81 ~v~~vl---~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~g--i~~ld~~vsGg~~~a~~G~-~im~GG~~~a~~~v 154 (490)
++++|+ +++++.+.+|++|||+||+.|..++++.+.+.++| +.|+|+||+||+.+|+.|. .+|+||++++++++
T Consensus 73 ~v~~V~~g~~g~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~~~~~lDaPVsGg~~~A~~G~L~imvGG~~~~~~~~ 152 (1378)
T PLN02858 73 QVDDVFFGDEGAAKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQIFLVDAYVSKGMSDLLNGKLMIIASGRSDAITRA 152 (1378)
T ss_pred HHHHHHhchhhHHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCCceEEEEccCcCCHHHHhcCCeEEEEcCCHHHHHHH
Confidence 999998 57888899999999999999999999999999999 9999999999999999999 99999999999999
Q ss_pred HHHHHhhCCceee-CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhcccchhhH
Q psy9637 155 KPIFQKLNPSFET-SAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGGCIIRSV 233 (490)
Q Consensus 155 ~~ll~~l~~~~~~-~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~~~v~~i~~~g~~~~s~ 233 (490)
+|+|+.++.++++ +|+.| .++.+|+++|++.++++++++|++.+++++ |||++.++++++.++ .+|+
T Consensus 153 ~p~l~~~g~~i~~~~G~~G-----~g~~~KL~nN~l~~~~~~a~aEAl~la~~~------Gld~~~l~~vl~~s~-g~s~ 220 (1378)
T PLN02858 153 QPFLSAMCQKLYTFEGEIG-----AGSKVKMVNELLEGIHLVASAEAMALGVRA------GIHPWIIYDIISNAA-GSSW 220 (1378)
T ss_pred HHHHHHhcCceEEecCCCC-----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCHHHHHHHHhcCC-ccCH
Confidence 9999999999876 58876 678999999999999999999999999999 999999999999876 5677
Q ss_pred hHhHhHHhhccCcccccccCChhHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhCCChhhhHHHHHHhh
Q psy9637 234 FLGNIKAAFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSALLGIPTPAFATALAFYDGYRSKRLPANLLQAQRDYF 312 (490)
Q Consensus 234 ~l~~i~~~~~~~~~~~~~~~~~~f~~~l~~~~kDl~~~~~~A~~~gv~~P~~~aa~~~~~~~~~~g~~~~~~~a~rd~f 312 (490)
+++.. .+.+.+..|.+.| .++.+.||+++++++|++.|+|+|+.+.+.+.|+.+.+.|++++|.+++.+++
T Consensus 221 ~~~~~------~~~~~~~d~~~~F--~l~l~~KDl~la~~~A~~~g~~lpl~~~a~~~~~~a~~~G~g~~D~sav~~~~ 291 (1378)
T PLN02858 221 IFKNH------VPLLLKDDYIEGR--FLNVLVQNLGIVLDMAKSLPFPLPLLAVAHQQLISGSSSMQGDDTATSLAKVW 291 (1378)
T ss_pred HHHhh------hhHhhcCCCCCCc--hhHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCccChHHHHHHH
Confidence 76652 3455666777776 68899999999999999999999999999999999999999998888776555
|
|
| >PF00393 6PGD: 6-phosphogluconate dehydrogenase, C-terminal domain; InterPro: IPR006114 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-46 Score=368.17 Aligned_cols=129 Identities=61% Similarity=1.027 Sum_probs=112.4
Q ss_pred cchhHHhhhhHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhccCcchhHHHHHHHHHhcccCCCCCcchhhhccccC
Q psy9637 358 GHFVKMVHNGIEYGDMQLICEAYHLMTGALGMSHDEMSAVFEDWNKGELDSFLIEITKDILKFKDTDGAPLVEKIKDYAG 437 (490)
Q Consensus 358 gh~vkmvhngiey~~m~~~~E~~~~~~~~~~~~~~~~~~~~~~w~~g~~~s~l~~~~~~~~~~~~~~~~~~l~~i~~~~~ 437 (490)
|||||||||||||||||+|||+|++||+.++++++||++||+.||+|+|+|||+||+++||++||.+|.|+||.|+|+++
T Consensus 1 GHyvKMVHNGIEYg~MQ~iaE~y~ll~~~~~~~~~ei~~vf~~Wn~g~l~S~Lieit~~il~~~d~~g~~lld~I~d~a~ 80 (291)
T PF00393_consen 1 GHYVKMVHNGIEYGDMQLIAEGYDLLRRGLGLSNEEIADVFEEWNKGELRSYLIEITADILRKKDETGGPLLDKILDKAG 80 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT--HHHHHHHHHHHHTTTT-BHHHHHHHHHHT-B-TTSSBGGGGB-S---
T ss_pred CCceeeeeccHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHCcCchhhHHHHHHHHHHhhccCccCcchhhhCCccC
Confidence 89999999999999999999999999988999999999999999999999999999999999988788999999999999
Q ss_pred CCcchHHHHHHHHhcCCCchhhHHHHHHHhhccCchHHHHHHhhcCCCC
Q psy9637 438 QKGTGKWTAISALDYGVPVTLIGESVFSRCLSSLFDERQKASQVLQGPN 486 (490)
Q Consensus 438 ~~g~g~w~~~~a~~~~~p~~~i~~a~~~r~~s~~~~~r~~~~~~~~~~~ 486 (490)
|||||+||++||+++|||+|+|++||++|++|+.|++|+++++.+++|.
T Consensus 81 ~kGtG~Wt~~~a~~~gvp~p~I~~a~~aR~~S~~k~~R~~~s~~~~~~~ 129 (291)
T PF00393_consen 81 QKGTGKWTVQEALELGVPAPTIAAAVFARFLSAQKEERVAASKILPGPQ 129 (291)
T ss_dssp -BSHHHHHHHHHHHHT---HHHHHHHHHHHHHHTHHHHHHHHHHSTT-S
T ss_pred CCCccchHHHHHHHhCCCccHHHHHHHHHHHhcCCcHHHHHHhhccccc
Confidence 9999999999999999999999999999999999999999999998864
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequences are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This entry represents the C-terminal all-alpha domain of 6-phosphogluconate dehydrogenase. The domain contains two structural repeats of 5 helices each. The NAD-binding domain is described in IPR006115 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0050661 NADP binding, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 2ZYD_A 2ZYA_A 3FWN_A 2JKV_E 2ZYG_B 4E21_A 1PGJ_A 1PGP_A 1PGN_A 2PGD_A .... |
| >PRK15059 tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-44 Score=357.66 Aligned_cols=281 Identities=20% Similarity=0.278 Sum_probs=253.4
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
|||||||+|.||.+||++|.++||+|++|||++. .+.+.+.+. ..+.++.++++. +|+||+|||++.++++
T Consensus 1 m~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~-~~~~~~~g~-----~~~~s~~~~~~~---advVi~~v~~~~~v~~ 71 (292)
T PRK15059 1 MKLGFIGLGIMGTPMAINLARAGHQLHVTTIGPV-ADELLSLGA-----VSVETARQVTEA---SDIIFIMVPDTPQVEE 71 (292)
T ss_pred CeEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHh-HHHHHHcCC-----eecCCHHHHHhc---CCEEEEeCCChHHHHH
Confidence 4799999999999999999999999999999975 566665544 357889998876 8999999999988999
Q ss_pred HHH---hhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCCCccccccCC-ccCCCCCcchHHHHHHHHHh
Q psy9637 85 FID---KLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGGEDGARYGP-SLMPGGNPAAWPALKPIFQK 160 (490)
Q Consensus 85 vl~---~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg~~~a~~G~-~im~GG~~~a~~~v~~ll~~ 160 (490)
++. ++.+.+.+|++|||+||+.|.+++++.+.+.++|+.|+|+||+||+.+++.|+ .+|+||+++++++++|+|+.
T Consensus 72 v~~~~~g~~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~~vdaPVsGg~~~a~~g~l~~~~gG~~~~~~~~~p~l~~ 151 (292)
T PRK15059 72 VLFGENGCTKASLKGKTIVDMSSISPIETKRFARQVNELGGDYLDAPVSGGEIGAREGTLSIMVGGDEAVFERVKPLFEL 151 (292)
T ss_pred HHcCCcchhccCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEEecCCCCHHHHhcCcEEEEEcCCHHHHHHHHHHHHH
Confidence 983 46777889999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred hCCceeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhcccchhhHhHhHhHH
Q psy9637 161 LNPSFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGGCIIRSVFLGNIKA 240 (490)
Q Consensus 161 l~~~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~~~v~~i~~~g~~~~s~~l~~i~~ 240 (490)
++.+++++|+.| .++.+|+++|++.++++.+++|++.+++++ |+|+++++++++.+. ++|++++..
T Consensus 152 ~g~~~~~~G~~G-----~g~~~Kl~~N~l~~~~~~a~~Ea~~la~~~------Gld~~~~~~~l~~~~-~~s~~~~~~-- 217 (292)
T PRK15059 152 LGKNITLVGGNG-----DGQTCKVANQIIVALNIEAVSEALLFASKA------GADPVRVRQALMGGF-ASSRILEVH-- 217 (292)
T ss_pred HcCCcEEeCCcc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCHHHHHHHHHcCc-ccCHHHHhh--
Confidence 999999999976 688999999999999999999999999999 999999999998765 677777653
Q ss_pred hhccCcccccccCChhHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhCCChhhhHHHHHHhhcc
Q psy9637 241 AFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSALLGIPTPAFATALAFYDGYRSKRLPANLLQAQRDYFGA 314 (490)
Q Consensus 241 ~~~~~~~~~~~~~~~~f~~~l~~~~kDl~~~~~~A~~~gv~~P~~~aa~~~~~~~~~~g~~~~~~~a~rd~fga 314 (490)
.+.+.+..|++.| +++.+.||++++++.|++.|+++|+.+++.++|+.+.+.|++++|.+++.++|..
T Consensus 218 ----~~~~~~~~~~~~f--~l~~~~KDl~l~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~D~sa~~~~~~~ 285 (292)
T PRK15059 218 ----GERMIKRTFNPGF--KIALHQKDLNLALQSAKALALNLPNTATCQELFNTCAANGGSQLDHSALVQALEL 285 (292)
T ss_pred ----chhhhcCCCCCCC--chHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCcCChHHHHHHHHH
Confidence 3456667777776 6889999999999999999999999999999999999999999999999887653
|
|
| >PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-42 Score=347.76 Aligned_cols=282 Identities=18% Similarity=0.206 Sum_probs=253.4
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
++|||||+|.||.+||.+|+++||+|++|||++++.+.+.+.+.. .+.++.++++. +|+||+|||+...++.
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~~g~~-----~~~s~~~~~~~---aDvVi~~vp~~~~~~~ 73 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVDKGAT-----PAASPAQAAAG---AEFVITMLPNGDLVRS 73 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCc-----ccCCHHHHHhc---CCEEEEecCCHHHHHH
Confidence 489999999999999999999999999999999999998876543 57888888877 8999999999877888
Q ss_pred HHH---hhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCCCccccccCC-ccCCCCCcchHHHHHHHHHh
Q psy9637 85 FID---KLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGGEDGARYGP-SLMPGGNPAAWPALKPIFQK 160 (490)
Q Consensus 85 vl~---~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg~~~a~~G~-~im~GG~~~a~~~v~~ll~~ 160 (490)
++. ++.+.+++|.++||+||..|..+.++.+.+.++|+.|+|+||+|++..++.|. ++|+||+++++++++|+|+.
T Consensus 74 vl~~~~~i~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~~ldapV~g~~~~a~~g~l~~~~gg~~~~~~~~~p~l~~ 153 (296)
T PRK15461 74 VLFGENGVCEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFSMMDVPVGRTSDNAITGTLLLLAGGTAEQVERATPILMA 153 (296)
T ss_pred HHcCcccHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEEccCCCCHHHHHhCcEEEEECCCHHHHHHHHHHHHH
Confidence 874 56777889999999999999999999999999999999999999999999999 89999999999999999999
Q ss_pred hCCceeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhcccchhhHhHhHhHH
Q psy9637 161 LNPSFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGGCIIRSVFLGNIKA 240 (490)
Q Consensus 161 l~~~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~~~v~~i~~~g~~~~s~~l~~i~~ 240 (490)
++.+++++|+.| .++.+|+++|++...++++++|++.+++++ |+|++.++++++.+....+.+....
T Consensus 154 ~g~~~~~~g~~G-----~g~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~------Gld~~~~~~~l~~~~~~~~~~~~~~-- 220 (296)
T PRK15461 154 MGNELINAGGPG-----MGIRVKLINNYMSIALNALSAEAAVLCEAL------GLSFDVALKVMSGTAAGKGHFTTTW-- 220 (296)
T ss_pred HcCCeEeeCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCHHHHHHHHhcCcccChHHHccc--
Confidence 999999999886 678999999999999999999999999999 9999999999987764433333221
Q ss_pred hhccCcccccccCChhHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhCCChhhhHHHHHHhhc
Q psy9637 241 AFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSALLGIPTPAFATALAFYDGYRSKRLPANLLQAQRDYFG 313 (490)
Q Consensus 241 ~~~~~~~~~~~~~~~~f~~~l~~~~kDl~~~~~~A~~~gv~~P~~~aa~~~~~~~~~~g~~~~~~~a~rd~fg 313 (490)
.+.+.+..|++.| .++.+.||+++++++|++.|+|+|+.+++.++|+.+.+.|++++|.+++.+++.
T Consensus 221 ----~~~~~~~~~~~~f--~~~~~~KD~~l~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~ 287 (296)
T PRK15461 221 ----PNKVLKGDLSPAF--MIDLAHKDLGIALDVANQLHVPMPLGAASREVYSQARAAGRGRQDWSAILEQVR 287 (296)
T ss_pred ----cchhccCCCCCCc--chHHHHhhHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCCCChHHHHHHHH
Confidence 1245566788877 789999999999999999999999999999999999999999999999987764
|
|
| >TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-41 Score=335.95 Aligned_cols=282 Identities=19% Similarity=0.237 Sum_probs=249.3
Q ss_pred EEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHHHH--
Q psy9637 9 LIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDDFI-- 86 (490)
Q Consensus 9 iIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~vl-- 86 (490)
|||+|.||.+||++|+++||+|++|||++++.+.+.+.+. ..+.++.+++++ +|+||+|||++.++++++
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~g~-----~~~~s~~~~~~~---advVil~vp~~~~~~~v~~g 72 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVAAGA-----QAAASPAEAAEG---ADRVITMLPAGQHVISVYSG 72 (288)
T ss_pred CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHcCC-----eecCCHHHHHhc---CCEEEEeCCChHHHHHHHcC
Confidence 6899999999999999999999999999999999887654 257789998887 899999999988899998
Q ss_pred -HhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCCCccccccCC-ccCCCCCcchHHHHHHHHHhhCCc
Q psy9637 87 -DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGGEDGARYGP-SLMPGGNPAAWPALKPIFQKLNPS 164 (490)
Q Consensus 87 -~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg~~~a~~G~-~im~GG~~~a~~~v~~ll~~l~~~ 164 (490)
+++.+.+.+|++|||+||..|..+++..+.+.++|++|+|+||+||+.+++.|+ .+|+||+++.+++++|+|+.++.+
T Consensus 73 ~~~l~~~~~~g~~vid~st~~p~~~~~~~~~~~~~g~~~vdaPv~Gg~~~a~~g~l~~~~gg~~~~~~~~~~~l~~~g~~ 152 (288)
T TIGR01692 73 DEGILPKVAKGSLLIDCSTIDPDSARKLAELAAAHGAVFMDAPVSGGVGGARAGTLTFMVGGVAEEFAAAEPVLGPMGRN 152 (288)
T ss_pred cchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEECCCCCCHHHHhhCcEEEEECCCHHHHHHHHHHHHHhcCC
Confidence 678888899999999999999999998899999999999999999999999999 999999999999999999999999
Q ss_pred eeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhcccchhhHhHhHhHHhhcc
Q psy9637 165 FETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGGCIIRSVFLGNIKAAFDK 244 (490)
Q Consensus 165 ~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~~~v~~i~~~g~~~~s~~l~~i~~~~~~ 244 (490)
++++|+.| .++.+|+++|++.+..+++++|++.++++. |+|++++.++++.+. .+++++.........
T Consensus 153 ~~~~g~~g-----~g~~~Kl~~n~~~~~~~~~~~Ea~~la~~~------Gld~~~~~~~~~~~~-~~s~~~~~~~~~~~~ 220 (288)
T TIGR01692 153 IVHCGDHG-----AGQAAKICNNMLLGISMIGTAEAMALGEKL------GLDPKVLFEIANTSS-GRCWSSDTYNPVPGV 220 (288)
T ss_pred eEeeCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCHHHHHHHHhcCC-ccCcHHHHhCCCccc
Confidence 99999876 678999999999999999999999999999 999999999998765 455555532110000
Q ss_pred -CcccccccCChhHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhCCChhhhHHHHHHhh
Q psy9637 245 -NPALSNLLLDPFFKDAIHATQSSWRAVVSQSALLGIPTPAFATALAFYDGYRSKRLPANLLQAQRDYF 312 (490)
Q Consensus 245 -~~~~~~~~~~~~f~~~l~~~~kDl~~~~~~A~~~gv~~P~~~aa~~~~~~~~~~g~~~~~~~a~rd~f 312 (490)
...+.++.|++.| .+..+.||++++.++|++.|+|+|+.+.+.++|+.+.+.|+++.|.+++.+++
T Consensus 221 ~~~~~~~~~~~~~f--~~~~~~KDl~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~ 287 (288)
T TIGR01692 221 MPQAPASNGYQGGF--GTALMLKDLGLAQDAAKSAGAPTPLGALARQLYSLFDDKGHGGKDFSSVIQLL 287 (288)
T ss_pred cccccccCCCCCCc--chHHHHhhHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCCCChHHHHHHh
Confidence 0122446677777 67789999999999999999999999999999999999999999999987764
|
This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446). |
| >TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=319.83 Aligned_cols=281 Identities=21% Similarity=0.318 Sum_probs=251.6
Q ss_pred cEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHHH
Q psy9637 6 DIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDDF 85 (490)
Q Consensus 6 ~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~v 85 (490)
+|||||+|.||.+||.+|+++||+|++|||++++.+.+.+.+.. .++++.+++++ +|+||+|||+...++.+
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~-----~~~~~~~~~~~---aDivi~~vp~~~~~~~v 72 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELLAAGAV-----TAETARQVTEQ---ADVIFTMVPDSPQVEEV 72 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCc-----ccCCHHHHHhc---CCEEEEecCCHHHHHHH
Confidence 59999999999999999999999999999999999998876542 46788888877 99999999998788888
Q ss_pred H---HhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCCCccccccCC-ccCCCCCcchHHHHHHHHHhh
Q psy9637 86 I---DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGGEDGARYGP-SLMPGGNPAAWPALKPIFQKL 161 (490)
Q Consensus 86 l---~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg~~~a~~G~-~im~GG~~~a~~~v~~ll~~l 161 (490)
+ +++.+.++++.+|||+||..|.++.++.+.+.++|++|+|+|++|++..+..|. .+|+||+++++++++++|+.+
T Consensus 73 ~~~~~~~~~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~~~~~~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~ll~~l 152 (291)
T TIGR01505 73 AFGENGIIEGAKPGKTLVDMSSISPIESKRFAKAVKEKGIDYLDAPVSGGEIGAIEGTLSIMVGGDQAVFDRVKPLFEAL 152 (291)
T ss_pred HcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEecCCCCCHHHHhcCCEEEEecCCHHHHHHHHHHHHHh
Confidence 7 456777889999999999999888898899999999999999999999999998 999999999999999999999
Q ss_pred CCceeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhcccchhhHhHhHhHHh
Q psy9637 162 NPSFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGGCIIRSVFLGNIKAA 241 (490)
Q Consensus 162 ~~~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~~~v~~i~~~g~~~~s~~l~~i~~~ 241 (490)
+.+++++|+.| .++.+|+++|++.+.++.+++|++.++++. |+|++++.++++.+. .+|++++..
T Consensus 153 g~~~~~~g~~g-----~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~------Gid~~~~~~~l~~~~-~~s~~~~~~--- 217 (291)
T TIGR01505 153 GKNIVLVGGNG-----DGQTCKVANQIIVALNIEAVSEALVFASKA------GVDPVRVRQALRGGL-AGSTVLEVK--- 217 (291)
T ss_pred cCCeEEeCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCHHHHHHHHhcCc-ccCHHHHhh---
Confidence 99999999865 678999999999999999999999999999 999999999998765 466766653
Q ss_pred hccCcccccccCChhHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhCCChhhhHHHHHHhhcc
Q psy9637 242 FDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSALLGIPTPAFATALAFYDGYRSKRLPANLLQAQRDYFGA 314 (490)
Q Consensus 242 ~~~~~~~~~~~~~~~f~~~l~~~~kDl~~~~~~A~~~gv~~P~~~aa~~~~~~~~~~g~~~~~~~a~rd~fga 314 (490)
.+.+.+..|.++| .+.++.||++++++++++.|+++|+.+++.++|+.+...|+++.|..++.++|..
T Consensus 218 ---~~~~~~~~~~~~f--~~~~~~KDl~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~g~~~~d~~~~~~~~~~ 285 (291)
T TIGR01505 218 ---GERVIDRTFKPGF--RIDLHQKDLNLALDSAKAVGANLPNTATVQELFNTLRANGGGQLDHSALVQALEL 285 (291)
T ss_pred ---ChhhhcCCCCCCc--chHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHhcCCCccChHHHHHHHHH
Confidence 2344455666666 6788999999999999999999999999999999999999999999999988753
|
This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism. |
| >PRK11559 garR tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-39 Score=320.93 Aligned_cols=282 Identities=21% Similarity=0.318 Sum_probs=251.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
+|+|||||+|.||..||.+|+++|++|.+|||++++.+.+.+.+. ..++++.++++. +|+||+|+|+...++
T Consensus 2 ~~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~g~-----~~~~~~~e~~~~---~d~vi~~vp~~~~~~ 73 (296)
T PRK11559 2 TMKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAGA-----ETASTAKAVAEQ---CDVIITMLPNSPHVK 73 (296)
T ss_pred CceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCC-----eecCCHHHHHhc---CCEEEEeCCCHHHHH
Confidence 368999999999999999999999999999999999988876553 356788888876 899999999988888
Q ss_pred HHH---HhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCCCccccccCC-ccCCCCCcchHHHHHHHHH
Q psy9637 84 DFI---DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGGEDGARYGP-SLMPGGNPAAWPALKPIFQ 159 (490)
Q Consensus 84 ~vl---~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg~~~a~~G~-~im~GG~~~a~~~v~~ll~ 159 (490)
.++ +++.+.+.+|++|||+||..|..++++.+.+..+|++|+|+||+||+..+..|. .+|+||+++++++++++|+
T Consensus 74 ~v~~~~~~~~~~~~~g~iiid~st~~~~~~~~l~~~~~~~g~~~~d~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~~l~ 153 (296)
T PRK11559 74 EVALGENGIIEGAKPGTVVIDMSSIAPLASREIAAALKAKGIEMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMK 153 (296)
T ss_pred HHHcCcchHhhcCCCCcEEEECCCCCHHHHHHHHHHHHHcCCcEEEcCCCCCHHHHhhCcEEEEECCCHHHHHHHHHHHH
Confidence 887 457888899999999999999888888898888999999999999999999998 8999999999999999999
Q ss_pred hhCCceeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhcccchhhHhHhHhH
Q psy9637 160 KLNPSFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGGCIIRSVFLGNIK 239 (490)
Q Consensus 160 ~l~~~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~~~v~~i~~~g~~~~s~~l~~i~ 239 (490)
.++.+++++|+.| .++.+|+++|++.+.++++++|++.++++. |+|++++.++++.+. ..|++++..
T Consensus 154 ~~~~~~~~~g~~g-----~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~------Gi~~~~~~~~l~~~~-~~s~~~~~~- 220 (296)
T PRK11559 154 AMAGSVVHTGDIG-----AGNVTKLANQVIVALNIAAMSEALVLATKA------GVNPDLVYQAIRGGL-AGSTVLDAK- 220 (296)
T ss_pred HhcCCeEEeCCcC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCHHHHHHHHhcCc-ccCHHHHhh-
Confidence 9999999999875 678999999999999999999999999999 999999999998654 445555542
Q ss_pred HhhccCcccccccCChhHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhCCChhhhHHHHHHhhc
Q psy9637 240 AAFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSALLGIPTPAFATALAFYDGYRSKRLPANLLQAQRDYFG 313 (490)
Q Consensus 240 ~~~~~~~~~~~~~~~~~f~~~l~~~~kDl~~~~~~A~~~gv~~P~~~aa~~~~~~~~~~g~~~~~~~a~rd~fg 313 (490)
.+.+.++.+.++| +++...||++++++++++.|+++|+++.+.+.|+.+.+.|+++.|..++.+++.
T Consensus 221 -----~~~~~~~d~~~~f--~~~~~~KDl~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~ 287 (296)
T PRK11559 221 -----APMVMDRNFKPGF--RIDLHIKDLANALDTSHGVGAPLPLTAAVMEMMQALKADGLGTADHSALACYYE 287 (296)
T ss_pred -----chHhhcCCCCCCc--chHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCcCCcHHHHHHHH
Confidence 2334455677766 678899999999999999999999999999999999999999999999988874
|
|
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-38 Score=364.99 Aligned_cols=281 Identities=17% Similarity=0.178 Sum_probs=255.7
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
++|||||+|.||.+||.+|+++||+|++|||++++++.+.+.+.. .+.++.++++. +|+||+|||++.++++
T Consensus 325 ~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~Ga~-----~~~s~~e~~~~---aDvVi~~V~~~~~v~~ 396 (1378)
T PLN02858 325 KRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFENAGGL-----AGNSPAEVAKD---VDVLVIMVANEVQAEN 396 (1378)
T ss_pred CeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCe-----ecCCHHHHHhc---CCEEEEecCChHHHHH
Confidence 689999999999999999999999999999999999999877653 47899999987 8999999999899999
Q ss_pred HH---HhhcccCCCCCEEEcCCCCChHHHHHHHHHHHH--ccccccccCCCCCccccccCC-ccCCCCCcchHHHHHHHH
Q psy9637 85 FI---DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEA--KGLLYVGCGVSGGEDGARYGP-SLMPGGNPAAWPALKPIF 158 (490)
Q Consensus 85 vl---~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~--~gi~~ld~~vsGg~~~a~~G~-~im~GG~~~a~~~v~~ll 158 (490)
|+ .++++.+.+|++|||+||+.|..+++..+.+++ +|++|+|+||+||+.+++.|. ++|+||+++++++++|+|
T Consensus 397 Vl~g~~g~~~~l~~g~ivVd~STvsP~~~~~la~~l~~~g~g~~~lDAPVsGg~~~A~~G~L~imvgG~~~~~~~~~plL 476 (1378)
T PLN02858 397 VLFGDLGAVSALPAGASIVLSSTVSPGFVIQLERRLENEGRDIKLVDAPVSGGVKRAAMGTLTIMASGTDEALKSAGSVL 476 (1378)
T ss_pred HHhchhhHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhhCCCcEEEEccCCCChhhhhcCCceEEEECCHHHHHHHHHHH
Confidence 98 457788899999999999999999999999988 899999999999999999999 999999999999999999
Q ss_pred HhhCCceee-CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhcccchhhHhHhH
Q psy9637 159 QKLNPSFET-SAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGGCIIRSVFLGN 237 (490)
Q Consensus 159 ~~l~~~~~~-~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~~~v~~i~~~g~~~~s~~l~~ 237 (490)
+.++.++++ .|+.| .++.+|+++|++.++++++++|++.+++++ |||+++++++++.+. .+|++++.
T Consensus 477 ~~lg~~i~~~~g~~G-----~a~~~KL~nN~l~~~~~aa~aEal~la~k~------Gld~~~l~evl~~s~-g~s~~~~~ 544 (1378)
T PLN02858 477 SALSEKLYVIKGGCG-----AGSGVKMVNQLLAGVHIASAAEAMAFGARL------GLNTRKLFDIISNAG-GTSWMFEN 544 (1378)
T ss_pred HHHhCcEEEeCCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCHHHHHHHHHhhc-ccChhhhh
Confidence 999999887 46666 689999999999999999999999999999 999999999998776 56676654
Q ss_pred hHHhhccCcccccccCChhHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhCCChhhhHHHHHHhhc
Q psy9637 238 IKAAFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSALLGIPTPAFATALAFYDGYRSKRLPANLLQAQRDYFG 313 (490)
Q Consensus 238 i~~~~~~~~~~~~~~~~~~f~~~l~~~~kDl~~~~~~A~~~gv~~P~~~aa~~~~~~~~~~g~~~~~~~a~rd~fg 313 (490)
. .+.+.+..|++.| .++.+.||++++++.+++.|+|+|+.+++.++|+.+.+.|+++.+.+++.+++.
T Consensus 545 ~------~~~~l~~d~~~~f--~l~l~~KDl~l~~~~a~~~g~~~pl~~~~~~~~~~a~~~G~g~~D~sav~~~~~ 612 (1378)
T PLN02858 545 R------VPHMLDNDYTPYS--ALDIFVKDLGIVSREGSSRKIPLHLSTVAHQLFLAGSASGWGRIDDAAVVKVYE 612 (1378)
T ss_pred c------cchhhcCCCCCCc--hhHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCccChHHHHHHHH
Confidence 2 3456667777776 688999999999999999999999999999999999999999999999887774
|
|
| >COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=285.09 Aligned_cols=159 Identities=64% Similarity=1.089 Sum_probs=155.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhcccchhhHhHhHhHHhhccCcccccccCC
Q psy9637 175 QRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGGCIIRSVFLGNIKAAFDKNPALSNLLLD 254 (490)
Q Consensus 175 ~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~~~v~~i~~~g~~~~s~~l~~i~~~~~~~~~~~~~~~~ 254 (490)
.+++.++++.++++++++++++|+|+|.+.++++++++|+|++.+++.+||+||||||.||+.|..+|.++|.+.|++++
T Consensus 312 ~~dk~~fi~~vr~ALy~sKI~sYAQGF~~l~~AS~e~gW~l~~~~iA~iWR~GCIIRs~FL~~I~~af~~~p~l~nLl~~ 391 (473)
T COG0362 312 PGDKEEFIEDVRQALYASKIVSYAQGFALLRAASKEYGWDLNLGEIALIWRGGCIIRSKFLDKITDAFDENPELANLLLA 391 (473)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHhccceehHHHHHHHHHHHhcCcchhhhhcC
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhCCChhhhHHHHHHhhcccccccccCCCCceeecccCC
Q psy9637 255 PFFKDAIHATQSSWRAVVSQSALLGIPTPAFATALAFYDGYRSKRLPANLLQAQRDYFGAHTYELLAAPGKFVHTNWTGH 334 (490)
Q Consensus 255 ~~f~~~l~~~~kDl~~~~~~A~~~gv~~P~~~aa~~~~~~~~~~g~~~~~~~a~rd~fgah~~~r~~~~~~~~h~~w~~~ 334 (490)
|+|...+...+.+||.++..|.+.|+|+|.+++++.||++++++.+|+|++||||||||||||+|+|++| +||++|+++
T Consensus 392 pyF~~~~~~~~~~~R~vV~~a~~~giP~P~~ssalsy~Dsyr~~~lpaNLiQAQRDyFGAHtyeR~D~~~-~fHt~W~~~ 470 (473)
T COG0362 392 PYFKSILEEYQQSLRRVVAYAVEAGIPVPAFSSALSYYDSYRTARLPANLIQAQRDYFGAHTYERTDKEG-FFHTNWTGG 470 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhhccccHHHHHHHHHhhcccceeecCCCC-ccccCccCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999988 899999865
|
|
| >PF00393 6PGD: 6-phosphogluconate dehydrogenase, C-terminal domain; InterPro: IPR006114 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=269.47 Aligned_cols=156 Identities=58% Similarity=1.035 Sum_probs=136.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhcccchhhHhHhHhHHhhccCcccccccCCh
Q psy9637 176 RDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGGCIIRSVFLGNIKAAFDKNPALSNLLLDP 255 (490)
Q Consensus 176 g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~~~v~~i~~~g~~~~s~~l~~i~~~~~~~~~~~~~~~~~ 255 (490)
.+...+++.+.++++++.+++|+|+|.+.++++++++|++|+.+++++||+||||||+||+.+..+|.++|.+.|++++|
T Consensus 136 ~~~~~~i~~l~~Aly~~~i~~yaQGf~ll~~as~~~~W~lnl~~ia~IWr~GCIIRs~lL~~i~~af~~~p~l~nLll~~ 215 (291)
T PF00393_consen 136 EDKEEFIEDLRKALYAAKIISYAQGFALLRAASKEYGWDLNLSEIARIWRGGCIIRSWLLDDIAEAFKENPDLENLLLDP 215 (291)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----HHHHHHHTSSSSTT-BTHHHHHHHHHHH-TT-STGGGSH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCcHHHHHHHHhccchHHHHHHHHHHHHHHhCCChhccccCH
Confidence 35778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhCCChhhhHHHHHHhhcccccccccCCCCceeeccc
Q psy9637 256 FFKDAIHATQSSWRAVVSQSALLGIPTPAFATALAFYDGYRSKRLPANLLQAQRDYFGAHTYELLAAPGKFVHTNWT 332 (490)
Q Consensus 256 ~f~~~l~~~~kDl~~~~~~A~~~gv~~P~~~aa~~~~~~~~~~g~~~~~~~a~rd~fgah~~~r~~~~~~~~h~~w~ 332 (490)
.|...+.....++|.++..|.+.|+|+|+++++++||+.+++..+|+|++||||||||+|||+|+|++|. ||++|+
T Consensus 216 ~f~~~l~~~~~~lR~vV~~ai~~gipvPalsaaL~Y~ds~~~~~lpanlIQAqRDyFGaHtyeR~D~~g~-fH~~W~ 291 (291)
T PF00393_consen 216 YFAEELKDNQPSLRRVVSLAIEAGIPVPALSAALSYFDSYRSERLPANLIQAQRDYFGAHTYERIDKEGS-FHTEWS 291 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT---HHHHHHHHHHHHHTTSSHTHHHHHHHHHHHH---EEBSSSSSE-E---TT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhcccCCCcHHHHHHHHHHhcCcceeecCCCCC-cCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999988 999995
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequences are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This entry represents the C-terminal all-alpha domain of 6-phosphogluconate dehydrogenase. The domain contains two structural repeats of 5 helices each. The NAD-binding domain is described in IPR006115 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0050661 NADP binding, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 2ZYD_A 2ZYA_A 3FWN_A 2JKV_E 2ZYG_B 4E21_A 1PGJ_A 1PGP_A 1PGN_A 2PGD_A .... |
| >KOG2653|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-32 Score=266.02 Aligned_cols=167 Identities=74% Similarity=1.252 Sum_probs=161.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhcccchhhHhHhHhHHhhccCcccccccCChh
Q psy9637 177 DKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGGCIIRSVFLGNIKAAFDKNPALSNLLLDPF 256 (490)
Q Consensus 177 ~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~~~v~~i~~~g~~~~s~~l~~i~~~~~~~~~~~~~~~~~~ 256 (490)
.+.++++.+.++++++.+++|+|+|.|.++++++++|.++...+..+|++||||||.||+.|.++|.++|.+.|++++|.
T Consensus 319 ~k~~~~dd~r~alYaskiiSyaQGfmLlr~aa~e~gW~ln~~~iAlmWrgGCIIRsvfL~~I~~a~~~~p~l~nll~d~f 398 (487)
T KOG2653|consen 319 DKKQFLDDIRQALYASKIISYAQGFMLLREAAKEKGWKLNNGGIALMWRGGCIIRSVFLDRIKKAYQRNPDLANLLLDPF 398 (487)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHcCCeEeeHHHHHHHHHHHhcCccHhhhccCHH
Confidence 36788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhCCChhhhHHHHHHhhcccccccccCCCCceeecccCCCC
Q psy9637 257 FKDAIHATQSSWRAVVSQSALLGIPTPAFATALAFYDGYRSKRLPANLLQAQRDYFGAHTYELLAAPGKFVHTNWTGHGG 336 (490)
Q Consensus 257 f~~~l~~~~kDl~~~~~~A~~~gv~~P~~~aa~~~~~~~~~~g~~~~~~~a~rd~fgah~~~r~~~~~~~~h~~w~~~~~ 336 (490)
|...+...+.+||.++..|.+.|+|+|.+++++.+|+.++++.+|+|++||||||||||||++++++|.++|++|++...
T Consensus 399 F~~~v~~~q~~wr~vV~~a~~~gIptP~~st~Lafydgyr~e~lpaNllQAqRDYFGAHtye~l~~~~~~~HtnWtg~gg 478 (487)
T KOG2653|consen 399 FAKAVEEAQDSWRRVVALAVEAGIPTPAFSTALAFYDGYRSERLPANLLQAQRDYFGAHTYELLGEPGKAIHTNWTGHGG 478 (487)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhhhhcCcHHHHHHHHHhhccceeeecCCCcceeeeeecccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CCccccC
Q psy9637 337 NSIAAKV 343 (490)
Q Consensus 337 ~~~~a~~ 343 (490)
++++.+|
T Consensus 479 ~~s~~~y 485 (487)
T KOG2653|consen 479 NVSSSTY 485 (487)
T ss_pred ccccccc
Confidence 7766554
|
|
| >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=99.98 E-value=5e-33 Score=255.51 Aligned_cols=159 Identities=29% Similarity=0.475 Sum_probs=142.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
|++|||||+|.||.+||+||+++||+|++|||++++.+++.+.+. +.++|+.|++++ +|+||+|||++.+++
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g~-----~~~~s~~e~~~~---~dvvi~~v~~~~~v~ 72 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAGA-----EVADSPAEAAEQ---ADVVILCVPDDDAVE 72 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTTE-----EEESSHHHHHHH---BSEEEE-SSSHHHHH
T ss_pred CCEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhhh-----hhhhhhhhHhhc---ccceEeecccchhhh
Confidence 469999999999999999999999999999999999999998764 479999999998 899999999999999
Q ss_pred HHHHh--hcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCCCccccccCC-ccCCCCCcchHHHHHHHHHh
Q psy9637 84 DFIDK--LVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGGEDGARYGP-SLMPGGNPAAWPALKPIFQK 160 (490)
Q Consensus 84 ~vl~~--l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg~~~a~~G~-~im~GG~~~a~~~v~~ll~~ 160 (490)
+++.+ +++.+.+|++|||+||+.|..++++.+.+.++|++|+|+||+||+.++++|+ ++|+||+++++++++|+|+.
T Consensus 73 ~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vdapV~Gg~~~a~~g~l~~~~gG~~~~~~~~~~~l~~ 152 (163)
T PF03446_consen 73 AVLFGENILAGLRPGKIIIDMSTISPETSRELAERLAAKGVRYVDAPVSGGPPGAEEGTLTIMVGGDEEAFERVRPLLEA 152 (163)
T ss_dssp HHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEEEEEEESHHHHHHHTTEEEEEES-HHHHHHHHHHHHH
T ss_pred hhhhhhHHhhccccceEEEecCCcchhhhhhhhhhhhhccceeeeeeeecccccccccceEEEccCCHHHHHHHHHHHHH
Confidence 99988 9999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred hCCceee-CCC
Q psy9637 161 LNPSFET-SAP 170 (490)
Q Consensus 161 l~~~~~~-~g~ 170 (490)
++.+++| +||
T Consensus 153 ~~~~v~~~~G~ 163 (163)
T PF03446_consen 153 MGKNVYHYVGP 163 (163)
T ss_dssp HEEEEEEE-ES
T ss_pred HhCCceeeeCc
Confidence 9999884 465
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... |
| >PRK09287 6-phosphogluconate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-31 Score=280.39 Aligned_cols=184 Identities=54% Similarity=0.938 Sum_probs=164.9
Q ss_pred chHHHHHHHHHhhC--CceeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhc
Q psy9637 149 AAWPALKPIFQKLN--PSFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRG 226 (490)
Q Consensus 149 ~a~~~v~~ll~~l~--~~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~~~v~~i~~~ 226 (490)
+++.++.+.++... ....+.|+.+...+++.+++|.++|+++++++++|+|+|.+.++++++++|++|+.+++++||+
T Consensus 272 AvfaR~~S~~k~~r~~~~~~~~g~~~~~~~~~~~~i~~v~~al~~~~i~ayaQGf~ll~~as~~~~w~ldl~~ia~iWr~ 351 (459)
T PRK09287 272 AVFARYLSSLKDQRVAASKVLSGPAAKFEGDKAEFIEDVRQALYASKIVSYAQGFALLRAASEEYGWDLDLGEIARIWRG 351 (459)
T ss_pred HHHHHhccccHHHHHHhhcccCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhCC
Confidence 45556666655542 1233456543212345799999999999999999999999999999999999999999999999
Q ss_pred ccchhhHhHhHhHHhhccCcccccccCChhHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhCCChhhhHH
Q psy9637 227 GCIIRSVFLGNIKAAFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSALLGIPTPAFATALAFYDGYRSKRLPANLLQ 306 (490)
Q Consensus 227 g~~~~s~~l~~i~~~~~~~~~~~~~~~~~~f~~~l~~~~kDl~~~~~~A~~~gv~~P~~~aa~~~~~~~~~~g~~~~~~~ 306 (490)
||||||+||+.+.++|.++|.+.|+++++.|...++.....||.++..|.+.|+|+|.+++++.||+.+++..+|+|++|
T Consensus 352 GcIIRs~lL~~i~~a~~~~~~l~nl~~~~~~~~~i~~~~~~~R~vV~~a~~~gip~P~ls~aL~y~d~~~~~~~~anliq 431 (459)
T PRK09287 352 GCIIRAQFLQKITDAYEANPDLANLLLDPYFKDILEEYQDALRRVVALAVQAGIPVPAFSSALSYYDSYRTARLPANLIQ 431 (459)
T ss_pred CCEEeHHHHHHHHHHHHhCCCchhhcCCHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcccccccccCCCCceeecccC
Q psy9637 307 AQRDYFGAHTYELLAAPGKFVHTNWTG 333 (490)
Q Consensus 307 a~rd~fgah~~~r~~~~~~~~h~~w~~ 333 (490)
+||||||+|+|+|+|++| +||++|++
T Consensus 432 aqRd~FGaH~~~r~d~~g-~~h~~w~~ 457 (459)
T PRK09287 432 AQRDYFGAHTYERTDKEG-FFHTEWSE 457 (459)
T ss_pred HHHhHhCCCCcccCCCCC-CCcccCCC
Confidence 999999999999999987 79999975
|
|
| >TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-30 Score=270.59 Aligned_cols=271 Identities=15% Similarity=0.161 Sum_probs=227.4
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHccc---------------CCCCeeccCCHHHHHhhCCCC
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEA---------------KGTNIIGAHSLEELVKNLKKP 69 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~---------------~~~~i~~~~s~~e~v~~l~~~ 69 (490)
|+|+|||+|.||.+||.+|+++||+|++||+++++++.+.+... ...++..++++.++++. +
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~---a 77 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIRD---A 77 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHhh---C
Confidence 48999999999999999999999999999999999988764210 01235567788887776 8
Q ss_pred cEEEEecCCCch---------HHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHc--ccc-ccccCCCCCccccc
Q psy9637 70 RRVMMLVKAGSA---------VDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAK--GLL-YVGCGVSGGEDGAR 137 (490)
Q Consensus 70 dvIil~vp~~~~---------v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~--gi~-~ld~~vsGg~~~a~ 137 (490)
|+||+|||++.. +.++++++.+.+++|++||++||..|.++.+..+.+.++ |.. ++|+|++++|+.+.
T Consensus 78 dvvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~~~~~~g~~~~~d~~v~~~Pe~~~ 157 (411)
T TIGR03026 78 DVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVVKPILERASGLKLGEDFYLAYNPEFLR 157 (411)
T ss_pred CEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHHHHHHHhhcCCCCCCCceEEECCCcCC
Confidence 999999998743 778888898999999999999999999988887655554 554 78999999999998
Q ss_pred cCC---------ccCCCCCcchHHHHHHHHHhhC-CceeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9637 138 YGP---------SLMPGGNPAAWPALKPIFQKLN-PSFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQA 207 (490)
Q Consensus 138 ~G~---------~im~GG~~~a~~~v~~ll~~l~-~~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a 207 (490)
.|. .+++|++++++++++++|+.++ ..++++++.+ .++++|+++|++.+.++++++|+..+++++
T Consensus 158 ~G~~~~~~~~~~~iv~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~-----~Ae~~Kl~~N~~~a~~ia~~nE~~~la~~~ 232 (411)
T TIGR03026 158 EGNAVHDLLNPDRIVGGETEEAGEAVAELYAPIIEDGPVLVTSIE-----TAEMIKLAENTFRAVKIAFANELARICEAL 232 (411)
T ss_pred CCChhhhhcCCCEEEEeCCHHHHHHHHHHHHHhccCCCEEcCCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 887 4789999999999999999998 5677777764 689999999999999999999999999999
Q ss_pred HHHhCCCCCHHHHHHHHhcccchhhHhHhHhHHhhccCcccccccCChhHHHHHHHHHHHHHHHHHHHHHcCCCchHHHH
Q psy9637 208 AEIHGWKLNYGGIALMWRGGCIIRSVFLGNIKAAFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSALLGIPTPAFAT 287 (490)
Q Consensus 208 ~~~~~~Gld~~~v~~i~~~g~~~~s~~l~~i~~~~~~~~~~~~~~~~~~f~~~l~~~~kDl~~~~~~A~~~gv~~P~~~a 287 (490)
|+|.+++.++++.+ +++....+.|+|.....++.||++.+++.|++.|+++|++++
T Consensus 233 ------GiD~~~v~~~~~~~------------------~~i~~~~~~pg~g~gg~c~~KD~~~l~~~a~~~g~~~~l~~~ 288 (411)
T TIGR03026 233 ------GIDVYEVIEAAGTD------------------PRIGFNFLNPGPGVGGHCIPKDPLALIYKAKELGYNPELIEA 288 (411)
T ss_pred ------CCCHHHHHHHhCCC------------------CCCCCCcCCCCCCCCCCchhhhHHHHHHHHHhcCCCcHHHHH
Confidence 99999999998644 334455677887667788999999999999999999999999
Q ss_pred HHHHHHHHHhCCChhhhHHHHHHhh
Q psy9637 288 ALAFYDGYRSKRLPANLLQAQRDYF 312 (490)
Q Consensus 288 a~~~~~~~~~~g~~~~~~~a~rd~f 312 (490)
+.+.-+ ..+..+++.+.+.+
T Consensus 289 ~~~~N~-----~~~~~~~~~~~~~l 308 (411)
T TIGR03026 289 AREIND-----SQPDYVVEKILDLL 308 (411)
T ss_pred HHHHHH-----HhHHHHHHHHHHHh
Confidence 988754 44556666666655
|
All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. |
| >TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.3e-31 Score=277.12 Aligned_cols=185 Identities=60% Similarity=1.024 Sum_probs=164.2
Q ss_pred chHHHHHHHHHhhCC--ceeeCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHh
Q psy9637 149 AAWPALKPIFQKLNP--SFETSAPTPK-PQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWR 225 (490)
Q Consensus 149 ~a~~~v~~ll~~l~~--~~~~~g~~g~-~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~~~v~~i~~ 225 (490)
+++++..+.++.... ...+.||.+. ..+++.+++|.++|+++++++++|+|+|.+.++++++|+|++|+.+++++||
T Consensus 279 av~~R~~S~~k~~r~~~~~~~~gp~~~~~~~~~~~~i~~l~~al~~~~i~ayaQGf~ll~~as~~~~w~ldl~~ia~iWr 358 (467)
T TIGR00873 279 SVFARYLSSLKEERVAASKVLSGPLAPEPAVDKEEFIEDVRQALYASKIISYAQGFMLLREASEEYGWDLNLGEIALIWR 358 (467)
T ss_pred HHHHHhccccHHHHHHhhcccCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhC
Confidence 455566665555422 2233455321 1134579999999999999999999999999999999999999999999999
Q ss_pred cccchhhHhHhHhHHhhccCcccccccCChhHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhCCChhhhH
Q psy9637 226 GGCIIRSVFLGNIKAAFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSALLGIPTPAFATALAFYDGYRSKRLPANLL 305 (490)
Q Consensus 226 ~g~~~~s~~l~~i~~~~~~~~~~~~~~~~~~f~~~l~~~~kDl~~~~~~A~~~gv~~P~~~aa~~~~~~~~~~g~~~~~~ 305 (490)
+||||||+||+.+.++|.+++.+.|+++++.|...++.....||.++..|.+.|+|+|.+++++.||+.+++..+|+|++
T Consensus 359 ~GcIIrs~lL~~i~~a~~~~~~l~~l~~~~~~~~~i~~~~~~~r~vV~~a~~~gip~P~ls~aL~y~~~~~s~~~~~nli 438 (467)
T TIGR00873 359 GGCIIRSGFLDKITKAFAENPDLANLLLAPYFKDALKDAQSGWRRVVALAIEYGIPVPAFSAALSFYDGYRTARLPANLL 438 (467)
T ss_pred CCceeeHhHHHHHHHHHHcCCChhhhcCCHHHHHHHHHhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcCcccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcccccccccCCCC-ceeecccC
Q psy9637 306 QAQRDYFGAHTYELLAAPGK-FVHTNWTG 333 (490)
Q Consensus 306 ~a~rd~fgah~~~r~~~~~~-~~h~~w~~ 333 (490)
|+||||||+|+|+|+|++|+ .||++|++
T Consensus 439 qaqRd~FGaH~~~r~d~~g~~~~h~~w~~ 467 (467)
T TIGR00873 439 QAQRDYFGAHTYERTDKPRGEFFHTNWTG 467 (467)
T ss_pred HHHHHHhccccccccCCCCCCccCCCCCC
Confidence 99999999999999999874 89999963
|
This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason. |
| >PTZ00142 6-phosphogluconate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4e-30 Score=271.46 Aligned_cols=155 Identities=60% Similarity=1.078 Sum_probs=151.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhcccchhhHhHhHhHHhhccCcccccccCChh
Q psy9637 177 DKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGGCIIRSVFLGNIKAAFDKNPALSNLLLDPF 256 (490)
Q Consensus 177 ~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~~~v~~i~~~g~~~~s~~l~~i~~~~~~~~~~~~~~~~~~ 256 (490)
.+.+++|.++|+++++++++|+|+|.+.++++++|+|++|+.+++++||+||||||+||+.+.++|.++|.+.|+++.|.
T Consensus 316 ~~~~~i~~v~~al~~~~i~ayaQGf~ll~~as~~y~w~ldl~~ia~iWr~GcIIRs~lL~~i~~a~~~~~~l~nl~~~~~ 395 (470)
T PTZ00142 316 DKKYFIDDLKNALYCSKIISYTQGFFLIKEASKEFGWNLNLGEIARIWRGGCIIRAVFLDRIKNAFKKNPQLDLLFLDPD 395 (470)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCceeeHhHHHHHHHHHhcCCChhhhcCCHH
Confidence 36799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhCCChhhhHHHHHHhhcccccccccCCCCceeeccc
Q psy9637 257 FKDAIHATQSSWRAVVSQSALLGIPTPAFATALAFYDGYRSKRLPANLLQAQRDYFGAHTYELLAAPGKFVHTNWT 332 (490)
Q Consensus 257 f~~~l~~~~kDl~~~~~~A~~~gv~~P~~~aa~~~~~~~~~~g~~~~~~~a~rd~fgah~~~r~~~~~~~~h~~w~ 332 (490)
|...+......||.++..|.+.|+|+|.+++++.||+.+++..+|+|++|+||||||+|+|+|+|++| .||++|+
T Consensus 396 ~~~~i~~~~~~~R~vV~~a~~~gip~P~~s~aL~y~~s~~~~~~~anliqaqRd~FGaH~~~r~d~~g-~~h~~w~ 470 (470)
T PTZ00142 396 FNDELKNKQPSWRKVVSMATKNGIPTPAFSASLAYYQMYRSQNLPANLVQAQRDYFGAHTYKRLDRPG-AFHTNWE 470 (470)
T ss_pred HHHHHHHhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHHHHHHhCCCCcccCCCCC-CCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999887 6999995
|
|
| >PLN02350 phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-28 Score=261.13 Aligned_cols=158 Identities=55% Similarity=0.993 Sum_probs=152.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhcccchhhHhHhHhHHhhccCcccccccCChh
Q psy9637 177 DKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGGCIIRSVFLGNIKAAFDKNPALSNLLLDPF 256 (490)
Q Consensus 177 ~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~~~v~~i~~~g~~~~s~~l~~i~~~~~~~~~~~~~~~~~~ 256 (490)
++..+++.+.++++++++++|+|+|.+.++++++++|++|+.+++++||+||||||+||+.+.++|.++|.+.++++.+.
T Consensus 325 ~~~~~~~~l~~al~~~~i~ayaQGf~ll~~as~~~~w~ldl~~ia~iWr~GcIIrs~lL~~i~~a~~~~~~l~~l~~~~~ 404 (493)
T PLN02350 325 DKKQLIDDVRQALYASKICSYAQGMNLIRAKSVEKGWNLNLGELARIWKGGCIIRAVFLDRIKKAYDRNPDLASLLVDPE 404 (493)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCCceeeHhHHHHHHHHHHcCCChhhhcCCHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhCCChhhhHHHHHHhhcccccccccCCCCceeecccCCC
Q psy9637 257 FKDAIHATQSSWRAVVSQSALLGIPTPAFATALAFYDGYRSKRLPANLLQAQRDYFGAHTYELLAAPGKFVHTNWTGHG 335 (490)
Q Consensus 257 f~~~l~~~~kDl~~~~~~A~~~gv~~P~~~aa~~~~~~~~~~g~~~~~~~a~rd~fgah~~~r~~~~~~~~h~~w~~~~ 335 (490)
|...+......+|.++..|.+.|+|+|.+++++.||+.+++..+|.|++|+||||||+|+|+|+|++| +||++|++.+
T Consensus 405 ~~~~~~~~~~~~r~~V~~a~~~gip~P~ls~aL~y~~s~~~~~~~~nliqaqRd~FGaH~~~r~d~~g-~~h~~w~~~~ 482 (493)
T PLN02350 405 FAKEMVERQAAWRRVVSLAINAGISTPGMSASLAYFDTYRRARLPANLVQAQRDYFGAHTYERVDRPG-SFHTEWTKLA 482 (493)
T ss_pred HHHHHHHhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCCccHHHHHHHHHHhCCCceeeCCCCC-CCcCCchhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999987 6999999654
|
|
| >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.9e-26 Score=239.30 Aligned_cols=268 Identities=15% Similarity=0.133 Sum_probs=203.9
Q ss_pred CCCCCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHh------------hCCC
Q psy9637 1 MAAKGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVK------------NLKK 68 (490)
Q Consensus 1 M~~~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~------------~l~~ 68 (490)
|. +|+|+|||+|.||.+||.+|+++||+|++||+++++++.+...... + ....+++++. .++.
T Consensus 1 m~-~~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~~---~-~e~~l~~~l~~~~~~g~l~~~~~~~~ 75 (415)
T PRK11064 1 MS-FETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEIH---I-VEPDLDMVVKTAVEGGYLRATTTPEP 75 (415)
T ss_pred CC-ccEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCCC---c-CCCCHHHHHHHHhhcCceeeeccccc
Confidence 65 5799999999999999999999999999999999999986532111 0 1122333221 1234
Q ss_pred CcEEEEecCCC---------chHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccc--------------c
Q psy9637 69 PRRVMMLVKAG---------SAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLY--------------V 125 (490)
Q Consensus 69 ~dvIil~vp~~---------~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~--------------l 125 (490)
+|+||+|||++ ..+.++++++.+.+++|++||+.||+.|..+++....+.+++..+ +
T Consensus 76 aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~~~~~~~~~~~~g~~~~f~v~ 155 (415)
T PRK11064 76 ADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAEARPDLTFPQQAGEQADINIA 155 (415)
T ss_pred CCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHHhccCCcccccccCCCCeEEE
Confidence 89999999997 578888899999999999999999999999999888777765443 4
Q ss_pred ccC--CCCCccccccCC-ccCCCC-CcchHHHHHHHHHhhCCceeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9637 126 GCG--VSGGEDGARYGP-SLMPGG-NPAAWPALKPIFQKLNPSFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGF 201 (490)
Q Consensus 126 d~~--vsGg~~~a~~G~-~im~GG-~~~a~~~v~~ll~~l~~~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~ 201 (490)
++| +.+|...+..+. ..|+|| +++.+++++++|+.++..++++++.+ .|+++|+++|++.+.+++.++|+.
T Consensus 156 ~~PE~~~~G~~~~~~~~~~~vvgG~~~~~~~~~~~ly~~~~~~~~~~~~~~-----~Ae~~Kl~~N~~~a~~ia~~nE~~ 230 (415)
T PRK11064 156 YCPERVLPGQVMVELIKNDRVIGGMTPVCSARASELYKIFLEGECVVTNSR-----TAEMCKLTENSFRDVNIAFANELS 230 (415)
T ss_pred ECCCccCCCChhhhhcCCCEEEEeCCHHHHHHHHHHHHHhcCCCeeeCCHH-----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444 455554444444 578899 88999999999999998777777664 789999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHhcccchhhHhHhHhHHhhccCcccccccCChhHHHHHHHHHHHHHHHHHHHHHcCCC
Q psy9637 202 MLMRQAAEIHGWKLNYGGIALMWRGGCIIRSVFLGNIKAAFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSALLGIP 281 (490)
Q Consensus 202 ~la~~a~~~~~~Gld~~~v~~i~~~g~~~~s~~l~~i~~~~~~~~~~~~~~~~~~f~~~l~~~~kDl~~~~~~A~~~gv~ 281 (490)
.+|++. |+|..++.+...... ++ ..+.|+++..-.++.||...+.. ..+..
T Consensus 231 ~lae~~------GiD~~~v~~~~~~~~------------------ri--~~l~pG~G~GG~ClpkD~~~L~~---~~~~~ 281 (415)
T PRK11064 231 LICADQ------GINVWELIRLANRHP------------------RV--NILQPGPGVGGHCIAVDPWFIVA---QNPQQ 281 (415)
T ss_pred HHHHHh------CCCHHHHHHHhccCC------------------Cc--ccCCCCCCCCCccccccHHHHHH---hcCCc
Confidence 999999 999999999875432 22 13455554455678999988754 56667
Q ss_pred chHHHHHHHHHHHHHhCCChhhhHHHHHHhh
Q psy9637 282 TPAFATALAFYDGYRSKRLPANLLQAQRDYF 312 (490)
Q Consensus 282 ~P~~~aa~~~~~~~~~~g~~~~~~~a~rd~f 312 (490)
.++++++.+. ++..+...++.+.+.+
T Consensus 282 ~~l~~~a~~~-----N~~~~~~v~~~~~~~l 307 (415)
T PRK11064 282 ARLIRTAREV-----NDGKPHWVIDQVKAAV 307 (415)
T ss_pred cHHHHHHHHH-----HHHhHHHHHHHHHHHH
Confidence 8888888765 4444555555554443
|
|
| >PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1e-25 Score=236.28 Aligned_cols=269 Identities=11% Similarity=0.119 Sum_probs=207.6
Q ss_pred CCCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccC------------CCCeeccCCHHHHHhhCCCCc
Q psy9637 3 AKGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAK------------GTNIIGAHSLEELVKNLKKPR 70 (490)
Q Consensus 3 ~~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~------------~~~i~~~~s~~e~v~~l~~~d 70 (490)
..|||||||+|.||.+||.+|++ ||+|++||+++++++.+. .|.. ..++..+++. +.++. +|
T Consensus 5 ~~mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l~-~G~~~~~e~~~~~l~~~g~l~~t~~~-~~~~~---ad 78 (425)
T PRK15182 5 DEVKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNKKRILELK-NGVDVNLETTEEELREARYLKFTSEI-EKIKE---CN 78 (425)
T ss_pred CCCeEEEECcCcchHHHHHHHhc-CCEEEEEeCCHHHHHHHH-CcCCCCCCCCHHHHHhhCCeeEEeCH-HHHcC---CC
Confidence 35799999999999999999887 699999999999999988 3332 0122333333 44555 89
Q ss_pred EEEEecCCC---------chHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHH--ccccccc--------cCCCC
Q psy9637 71 RVMMLVKAG---------SAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEA--KGLLYVG--------CGVSG 131 (490)
Q Consensus 71 vIil~vp~~---------~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~--~gi~~ld--------~~vsG 131 (490)
++|+|||++ ..+....+++.+.+++|++||+.||+.|.+++++.+...+ .|..+.+ .++.+
T Consensus 79 vvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~~~~g~~~~~~~~~~~~PE~v~~ 158 (425)
T PRK15182 79 FYIITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILARMSGMTFNQDFYVGYSPERINP 158 (425)
T ss_pred EEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHHhccCCCcCCCeeEeeCCCcCCC
Confidence 999999987 2444455788899999999999999999999987644443 3777776 45666
Q ss_pred CccccccCC--ccCCCCCcchHHHHHHHHHhhC-CceeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9637 132 GEDGARYGP--SLMPGGNPAAWPALKPIFQKLN-PSFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAA 208 (490)
Q Consensus 132 g~~~a~~G~--~im~GG~~~a~~~v~~ll~~l~-~~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~ 208 (490)
|...+..+. .++.|++++..+.++++++.+. ...++++..+ .|+++|+++|++.+.+++.++|+..+|++.
T Consensus 159 G~a~~~~~~~~riv~G~~~~~~~~~~~ly~~~~~~~~~~~~~~~-----~AE~~Kl~~N~~~av~Ia~~NE~a~lae~~- 232 (425)
T PRK15182 159 GDKKHRLTNIKKITSGSTAQIAELIDEVYQQIISAGTYKAESIK-----VAEAAKVIENTQRDLNIALVNELAIIFNRL- 232 (425)
T ss_pred CcccccccCCCeEEECCCHHHHHHHHHHHHHHhhcCcEEecCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 666555544 4667777788889999999986 3455555554 789999999999999999999999999999
Q ss_pred HHhCCCCCHHHHHHHHhcccchhhHhHhHhHHhhccCcccccccCChhHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHH
Q psy9637 209 EIHGWKLNYGGIALMWRGGCIIRSVFLGNIKAAFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSALLGIPTPAFATA 288 (490)
Q Consensus 209 ~~~~~Gld~~~v~~i~~~g~~~~s~~l~~i~~~~~~~~~~~~~~~~~~f~~~l~~~~kDl~~~~~~A~~~gv~~P~~~aa 288 (490)
|+|..+++++.... +.+. .+.|++ ..-.+..||...++..+++.|+.+++++++
T Consensus 233 -----GiD~~~v~~a~~~~------------------~~~~--~~~pG~-vGG~ClpkD~~~L~~~a~~~g~~~~l~~~a 286 (425)
T PRK15182 233 -----NIDTEAVLRAAGSK------------------WNFL--PFRPGL-VGGHCIGVDPYYLTHKSQGIGYYPEIILAG 286 (425)
T ss_pred -----CcCHHHHHHHhcCC------------------CCcc--cCCCCc-cccccccccHHHHHHHHHhcCCCcHHHHHH
Confidence 99999999985322 1111 135664 455679999999999999999999999998
Q ss_pred HHHHHHHHhCCChhhhHHHHHHhhcc
Q psy9637 289 LAFYDGYRSKRLPANLLQAQRDYFGA 314 (490)
Q Consensus 289 ~~~~~~~~~~g~~~~~~~a~rd~fga 314 (490)
.+. ++..+...++.+.+.++.
T Consensus 287 ~~i-----N~~~~~~v~~~~~~~l~~ 307 (425)
T PRK15182 287 RRL-----NDNMGNYVSEQLIKAMIK 307 (425)
T ss_pred HHH-----HHHHHHHHHHHHHHHHHh
Confidence 765 456677777777777653
|
|
| >PRK15057 UDP-glucose 6-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.7e-25 Score=228.02 Aligned_cols=259 Identities=12% Similarity=0.112 Sum_probs=202.1
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHccc-------------CCCCeeccCCHHHHHhhCCCCcE
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEA-------------KGTNIIGAHSLEELVKNLKKPRR 71 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~-------------~~~~i~~~~s~~e~v~~l~~~dv 71 (490)
|||+|||+|.||.++|..|+ .||+|++||+++++++.+.+.-. ...++....++.+++.. +|+
T Consensus 1 mkI~VIGlGyvGl~~A~~lA-~G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~---ad~ 76 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIA-QNHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYRD---ADY 76 (388)
T ss_pred CEEEEECCCHHHHHHHHHHH-hCCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhcC---CCE
Confidence 48999999999999997777 59999999999999998875210 01234444556777666 899
Q ss_pred EEEecCCC----------chHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCCCccccccCC-
Q psy9637 72 VMMLVKAG----------SAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGGEDGARYGP- 140 (490)
Q Consensus 72 Iil~vp~~----------~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg~~~a~~G~- 140 (490)
||+|||++ ..++++++++.+ +++|++||+.||+.|.+++++.+.+.+.++.| +|+.++.|.
T Consensus 77 vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV~~STv~pgtt~~l~~~~~~~~v~~-------~PE~l~~G~a 148 (388)
T PRK15057 77 VIIATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMVIKSTVPVGFTAAMHKKYRTENIIF-------SPEFLREGKA 148 (388)
T ss_pred EEEeCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEEEeeecCCchHHHHHHHhhcCcEEE-------CcccccCCcc
Confidence 99999987 577888888877 68999999999999999999988777666655 556666665
Q ss_pred --------ccCCCCCcchHHHHHHHHHh--hCCcee-eCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9637 141 --------SLMPGGNPAAWPALKPIFQK--LNPSFE-TSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAE 209 (490)
Q Consensus 141 --------~im~GG~~~a~~~v~~ll~~--l~~~~~-~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~ 209 (490)
.+|+|++++..+++.++|.. ++..+. ++++.+ .|+++|+++|++.+.+++.++|+..+|++.
T Consensus 149 ~~d~~~p~rvv~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-----~AE~~Kl~~N~~~a~~Ia~~NE~a~lae~~-- 221 (388)
T PRK15057 149 LYDNLHPSRIVIGERSERAERFAALLQEGAIKQNIPTLFTDST-----EAEAIKLFANTYLAMRVAYFNELDSYAESL-- 221 (388)
T ss_pred cccccCCCEEEEEcCcHHHHHHHHHHHhhhhcCCCceeeCCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence 47889999999999999965 454433 455543 789999999999999999999999999999
Q ss_pred HhCCCCCHHHHHHHHhcccchhhHhHhHhHHhhccCcccccccCChhHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHH
Q psy9637 210 IHGWKLNYGGIALMWRGGCIIRSVFLGNIKAAFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSALLGIPTPAFATAL 289 (490)
Q Consensus 210 ~~~~Gld~~~v~~i~~~g~~~~s~~l~~i~~~~~~~~~~~~~~~~~~f~~~l~~~~kDl~~~~~~A~~~gv~~P~~~aa~ 289 (490)
|+|..++.+++.... ++....+.|+++..-.++.||...+...+ .++++++++++.
T Consensus 222 ----GiD~~eV~~a~~~d~------------------ri~~~~l~pG~G~GG~ClpkD~~~L~~~~--~~~~~~l~~~~~ 277 (388)
T PRK15057 222 ----GLNTRQIIEGVCLDP------------------RIGNHYNNPSFGYGGYCLPKDTKQLLANY--QSVPNNLISAIV 277 (388)
T ss_pred ----CcCHHHHHHHhcCCC------------------CCCCccCCCCCCCCCcChhhhHHHHHHhc--cCCCcHHHHHHH
Confidence 999999999986443 23333345665555667999999987655 567888888887
Q ss_pred HHHHHHHhCCChhhhHHHHHHh
Q psy9637 290 AFYDGYRSKRLPANLLQAQRDY 311 (490)
Q Consensus 290 ~~~~~~~~~g~~~~~~~a~rd~ 311 (490)
+. ++..+..+++.+.+.
T Consensus 278 ~~-----N~~~~~~~~~~~~~~ 294 (388)
T PRK15057 278 DA-----NRTRKDFIADAILSR 294 (388)
T ss_pred HH-----HHHhHHHHHHHHHHh
Confidence 65 555667777766664
|
|
| >PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.6e-25 Score=223.77 Aligned_cols=272 Identities=12% Similarity=0.026 Sum_probs=195.4
Q ss_pred CCCCCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccC---------CCCeeccCCHHHHHhhCCCCcE
Q psy9637 1 MAAKGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAK---------GTNIIGAHSLEELVKNLKKPRR 71 (490)
Q Consensus 1 M~~~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~---------~~~i~~~~s~~e~v~~l~~~dv 71 (490)
|+.+|||+|||+|.||..||.+|+++||+|++|+|++++.+.+.+.+.. ..++..+++++++++. +|+
T Consensus 1 ~~~~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~---aD~ 77 (328)
T PRK14618 1 MHHGMRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAG---ADF 77 (328)
T ss_pred CCCCCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcC---CCE
Confidence 7778899999999999999999999999999999999998888764211 1124467788887765 899
Q ss_pred EEEecCCCchHHHHHHhhcccCCCCCEEEcCCCC-ChHH--HHHHHHHHHH---ccccccccCCCCCccccccCC-ccCC
Q psy9637 72 VMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNS-EYQD--TDRRSKALEA---KGLLYVGCGVSGGEDGARYGP-SLMP 144 (490)
Q Consensus 72 Iil~vp~~~~v~~vl~~l~~~l~~g~iiId~s~~-~~~~--~~~~~~~l~~---~gi~~ld~~vsGg~~~a~~G~-~im~ 144 (490)
||+|||+. .++++++. ++++.++|+++|+ .+.+ .....+.+.+ +++.+++.|......+...+. .+|.
T Consensus 78 Vi~~v~~~-~~~~v~~~----l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~~~~~~~~~~gP~~a~~~~~~~~~~~~~~ 152 (328)
T PRK14618 78 AVVAVPSK-ALRETLAG----LPRALGYVSCAKGLAPDGGRLSELARVLEFLTQARVAVLSGPNHAEEIARFLPAATVVA 152 (328)
T ss_pred EEEECchH-HHHHHHHh----cCcCCEEEEEeeccccCCCccchHHHHHHHhcCCCeEEEECccHHHHHHcCCCeEEEEE
Confidence 99999996 67777644 5577899999995 4332 3444455544 566555555433333333345 7789
Q ss_pred CCCcchHHHHHHHHHhhCCceeeCCC-----CCC--------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9637 145 GGNPAAWPALKPIFQKLNPSFETSAP-----TPK--------PQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIH 211 (490)
Q Consensus 145 GG~~~a~~~v~~ll~~l~~~~~~~g~-----~g~--------~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~ 211 (490)
|++++.+++++++|+..+.+++.... .+. ..| .+..+|+.+|+..+....+++|++.+++++
T Consensus 153 ~~~~~~~~~v~~ll~~~~~~v~~~~di~g~~~~~~lkN~~ai~~G-~~~~~k~~~n~~~~~~~~~~~E~~~la~~~---- 227 (328)
T PRK14618 153 SPEPGLARRVQAAFSGPSFRVYTSRDRVGVELGGALKNVIALAAG-MVDGLKLGDNAKAALITRGLREMVRFGVAL---- 227 (328)
T ss_pred eCCHHHHHHHHHHhCCCcEEEEecCCccchhhhHHHHHHHHHHHH-HHHHhCCCccHHHHHHHHHHHHHHHHHHHh----
Confidence 99999999999999998877763211 110 011 456789999999999999999999999999
Q ss_pred CCCCCHHHHHHHHhcc---cchhhHhHhHhHHhhccCcccccc---c-CChhHHHHHHHHHHHHHHHHHHHHHcCCCchH
Q psy9637 212 GWKLNYGGIALMWRGG---CIIRSVFLGNIKAAFDKNPALSNL---L-LDPFFKDAIHATQSSWRAVVSQSALLGIPTPA 284 (490)
Q Consensus 212 ~~Gld~~~v~~i~~~g---~~~~s~~l~~i~~~~~~~~~~~~~---~-~~~~f~~~l~~~~kDl~~~~~~A~~~gv~~P~ 284 (490)
|+|+++++++...| ....|+..+.... ...+.+. . +.+. +.+....||++.+.+.+++.++++|+
T Consensus 228 --G~~~~~~~~~~~~gDl~~t~~s~~~rn~~~----g~~~~~g~~~~~~~~~--~~~~~g~kd~~~~~~la~~~~~~~Pl 299 (328)
T PRK14618 228 --GAEEATFYGLSGLGDLIATATSPHSRNRAA----GEAIVRGVDREHLEAG--GKVVEGLYTVKALDAWAKAHGHDLPI 299 (328)
T ss_pred --CCCccchhcCcchhheeeEeccCCCccHHH----HHHHhCCCCHHHHHHc--CCEEecHHHHHHHHHHHHHhCCCCCH
Confidence 99999999997653 1122333332110 0011121 1 1122 24667889999999999999999999
Q ss_pred HHHHHHHHH
Q psy9637 285 FATALAFYD 293 (490)
Q Consensus 285 ~~aa~~~~~ 293 (490)
++++++++.
T Consensus 300 ~~~~~~~~~ 308 (328)
T PRK14618 300 VEAVARVAR 308 (328)
T ss_pred HHHHHHHHh
Confidence 999988873
|
|
| >PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=5e-24 Score=216.62 Aligned_cols=275 Identities=14% Similarity=0.103 Sum_probs=191.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCC---------CCeeccCCHHHHHhhCCCCcEEEE
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKG---------TNIIGAHSLEELVKNLKKPRRVMM 74 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~---------~~i~~~~s~~e~v~~l~~~dvIil 74 (490)
||||+|||+|.||..||.+|+++||+|++|||++++++.+.+.+... .++..+.+++++++. +|+||+
T Consensus 1 mmkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~D~vi~ 77 (325)
T PRK00094 1 MMKIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALAD---ADLILV 77 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhC---CCEEEE
Confidence 36899999999999999999999999999999999998887753211 124456778777766 899999
Q ss_pred ecCCCchHHHHHHhhcccCCCCCEEEcCCCCChH-HHHHHHHHHHHc-----cccccccCCCCCccccccCC-ccCCCCC
Q psy9637 75 LVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQ-DTDRRSKALEAK-----GLLYVGCGVSGGEDGARYGP-SLMPGGN 147 (490)
Q Consensus 75 ~vp~~~~v~~vl~~l~~~l~~g~iiId~s~~~~~-~~~~~~~~l~~~-----gi~~ld~~vsGg~~~a~~G~-~im~GG~ 147 (490)
|||+ ..++++++++.+.+.++.+||+++|+... ...+..+.+.+. ...+++.|..+....+.... .++.|++
T Consensus 78 ~v~~-~~~~~v~~~l~~~~~~~~~vi~~~ngv~~~~~~~~~~~l~~~~~~~~~~~~~~~P~~~~~~~~g~~~~~~~~~~~ 156 (325)
T PRK00094 78 AVPS-QALREVLKQLKPLLPPDAPIVWATKGIEPGTGKLLSEVLEEELPDLAPIAVLSGPSFAKEVARGLPTAVVIASTD 156 (325)
T ss_pred eCCH-HHHHHHHHHHHhhcCCCCEEEEEeecccCCCCCcHHHHHHHHcCCCCceEEEECccHHHHHHcCCCcEEEEEeCC
Confidence 9999 58999999999998899999999855443 333333444443 23344555443333333334 5567778
Q ss_pred cchHHHHHHHHHhhCCceeeCCCC-CCCC-----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q psy9637 148 PAAWPALKPIFQKLNPSFETSAPT-PKPQ-----------RDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKL 215 (490)
Q Consensus 148 ~~a~~~v~~ll~~l~~~~~~~g~~-g~~~-----------g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gl 215 (490)
.+.++++.++|+..+.++.+.... +..- ...+..+|+.+|.+.+....+++|++.+++++ |+
T Consensus 157 ~~~~~~~~~~l~~~~~~~~~~~d~~g~~~~k~~~N~~~~~~g~~~~~k~~~n~~~~~~~~~~~E~~~la~~~------G~ 230 (325)
T PRK00094 157 EELAERVQELFHSPYFRVYTNTDVIGVELGGALKNVIAIAAGIADGLGLGDNARAALITRGLAEITRLGVAL------GA 230 (325)
T ss_pred HHHHHHHHHHhCCCCEEEEecCCcchhhHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHh------CC
Confidence 899999999999888766554332 1000 01345578889999999999999999999999 99
Q ss_pred CHHHHHHHHhcccchhhHhHhHhHHhhccCcccccccCC-hhHHH------HHHHHHHHHHHHHHHHHHcCCCchHHHHH
Q psy9637 216 NYGGIALMWRGGCIIRSVFLGNIKAAFDKNPALSNLLLD-PFFKD------AIHATQSSWRAVVSQSALLGIPTPAFATA 288 (490)
Q Consensus 216 d~~~v~~i~~~g~~~~s~~l~~i~~~~~~~~~~~~~~~~-~~f~~------~l~~~~kDl~~~~~~A~~~gv~~P~~~aa 288 (490)
|++.+.++...|.. .....+...++......+.. ..+.. .+....||++.+++.++++|+++|+++++
T Consensus 231 d~~~~~~~~~~~~~-----~~~~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~~~~~P~~~~~ 305 (325)
T PRK00094 231 NPETFLGLAGLGDL-----VLTCTSPLSRNRRFGLALGQGKSLEEALAEIGMVAEGVRTAKAVYELAKKLGVEMPITEAV 305 (325)
T ss_pred ChhhhhcccHhhhh-----hhhccCCCCccHHHHHHHHCCCCHHHHHHHcCCEeecHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 99999887543321 11110101111110001100 00111 23456899999999999999999999999
Q ss_pred HHHHH
Q psy9637 289 LAFYD 293 (490)
Q Consensus 289 ~~~~~ 293 (490)
++.|.
T Consensus 306 ~~~~~ 310 (325)
T PRK00094 306 YAVLY 310 (325)
T ss_pred HHHHc
Confidence 98874
|
|
| >PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.5e-22 Score=204.70 Aligned_cols=243 Identities=13% Similarity=0.109 Sum_probs=179.9
Q ss_pred CCCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchH
Q psy9637 3 AKGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAV 82 (490)
Q Consensus 3 ~~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v 82 (490)
..|||+|||+|.||.+||.+|.++||+|++|||++. .++++++++ +|+||+++|+ .++
T Consensus 3 ~~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~------------------~~~~~~~~~---advvi~~vp~-~~~ 60 (308)
T PRK14619 3 QPKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG------------------LSLAAVLAD---ADVIVSAVSM-KGV 60 (308)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC------------------CCHHHHHhc---CCEEEEECCh-HHH
Confidence 457999999999999999999999999999999842 466777776 8999999999 489
Q ss_pred HHHHHhhccc-CCCCCEEEcCCCC-ChHHHHHHHHHHHHccccccccCCC--CCcccccc---C--C-ccCCCCCcchHH
Q psy9637 83 DDFIDKLVPL-LEKGDIIIDGGNS-EYQDTDRRSKALEAKGLLYVGCGVS--GGEDGARY---G--P-SLMPGGNPAAWP 152 (490)
Q Consensus 83 ~~vl~~l~~~-l~~g~iiId~s~~-~~~~~~~~~~~l~~~gi~~ld~~vs--Gg~~~a~~---G--~-~im~GG~~~a~~ 152 (490)
+++++.+.+. +.++.+||++++. .|.......+.+. .+|.+.|+. +|+..+.+ + . .+++|++.++++
T Consensus 61 ~~v~~~l~~~~~~~~~ivi~~s~gi~~~~~~~~s~~~~---~~~~~~~v~~i~gp~~a~ei~~~~~~~~~~ag~~~~~~~ 137 (308)
T PRK14619 61 RPVAEQVQALNLPPETIIVTATKGLDPETTRTPSQIWQ---AAFPNHPVVVLSGPNLSKEIQQGLPAATVVASRDLAAAE 137 (308)
T ss_pred HHHHHHHHHhcCCCCcEEEEeCCcccCCCCcCHHHHHH---HHcCCCceEEEECCCcHHHHhcCCCeEEEEEeCCHHHHH
Confidence 9999888774 7889999999874 3333332333332 246678874 55554422 2 3 678899999999
Q ss_pred HHHHHHHhhCCceeeCCCC-CCCCCCHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCH
Q psy9637 153 ALKPIFQKLNPSFETSAPT-PKPQRDKKEF--------------LENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNY 217 (490)
Q Consensus 153 ~v~~ll~~l~~~~~~~g~~-g~~~g~~a~~--------------~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~ 217 (490)
+++++|+..+.++++.++. |. ..+.. +|+.+|...+....++.|++.+++++ |+++
T Consensus 138 ~v~~ll~~~~~~~~~~~d~~G~---~~~~alkNv~ai~~G~~~~~~l~~N~~~a~~~~~~~E~~~l~~~~------G~~~ 208 (308)
T PRK14619 138 TVQQIFSSERFRVYTNSDPLGT---ELGGTLKNVIAIAAGVCDGLQLGTNAKAALVTRALPEMIRVGTHL------GAQT 208 (308)
T ss_pred HHHHHhCCCcEEEEecCCchhh---hhHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHh------CCCc
Confidence 9999999988777765542 10 12223 34888999999999999999999999 9999
Q ss_pred HHHHHHHhcccchhhHhHhHhHHhhccCcccccccCChhHHHHHHHH----------------HHHHHHHHHHHHHcCCC
Q psy9637 218 GGIALMWRGGCIIRSVFLGNIKAAFDKNPALSNLLLDPFFKDAIHAT----------------QSSWRAVVSQSALLGIP 281 (490)
Q Consensus 218 ~~v~~i~~~g~~~~s~~l~~i~~~~~~~~~~~~~~~~~~f~~~l~~~----------------~kDl~~~~~~A~~~gv~ 281 (490)
+.++++- +++.+.. . .+.+.++.+.++| .+... .||++.+++++++.|++
T Consensus 209 ~t~~~~~---g~gd~~~--t-------~~~~~~rn~~~g~--~l~~g~~~~~~~~~~~~~~eG~~~~~~~~~~~~~~~~~ 274 (308)
T PRK14619 209 ETFYGLS---GLGDLLA--T-------CTSPLSRNYQVGY--GLAQGKSLEQILAELEGTAEGVNTANVLVQLAQQQNIA 274 (308)
T ss_pred ccccccc---chhhhhe--e-------ecCCCCccHHHHH--HHHCCCCHHHHHHhcCCEeecHHHHHHHHHHHHHcCCC
Confidence 9998852 2222211 1 1111222222222 33343 89999999999999999
Q ss_pred chHHHHHHHHHH
Q psy9637 282 TPAFATALAFYD 293 (490)
Q Consensus 282 ~P~~~aa~~~~~ 293 (490)
+|++.+++++|.
T Consensus 275 ~Pl~~~v~~i~~ 286 (308)
T PRK14619 275 VPITEQVYRLLQ 286 (308)
T ss_pred CCHHHHHHHHHc
Confidence 999999999884
|
|
| >COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1e-20 Score=190.30 Aligned_cols=270 Identities=14% Similarity=0.143 Sum_probs=217.4
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHccc---------------CCCCeeccCCHHHHHhhCCCC
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEA---------------KGTNIIGAHSLEELVKNLKKP 69 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~---------------~~~~i~~~~s~~e~v~~l~~~ 69 (490)
|||.|||.|.+|...+..|++.||+|+.+|.+++|++.+.+... ...++.++++.+++++. +
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~---a 77 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVKD---A 77 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHhc---C
Confidence 58999999999999999999999999999999999987764211 13458889999998887 9
Q ss_pred cEEEEecCCCc---------hHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCCCccccccCC
Q psy9637 70 RRVMMLVKAGS---------AVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGGEDGARYGP 140 (490)
Q Consensus 70 dvIil~vp~~~---------~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg~~~a~~G~ 140 (490)
|++|++||++. .++.+++.+.+.++...+||.-||+.+.++.+..+.+.+..-.- |..|.-.|+-.++|.
T Consensus 78 dv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~~~i~~~~~~~-~f~v~~NPEFLREG~ 156 (414)
T COG1004 78 DVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVRAKIREENSGK-DFEVASNPEFLREGS 156 (414)
T ss_pred CEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHHHHHHhhcccC-CceEecChHHhcCcc
Confidence 99999998874 37788899999998889999999999999988887665543211 566666777777775
Q ss_pred ---------ccCCCCCcc-hHHHHHHHHHhh---CCceeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9637 141 ---------SLMPGGNPA-AWPALKPIFQKL---NPSFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQA 207 (490)
Q Consensus 141 ---------~im~GG~~~-a~~~v~~ll~~l---~~~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a 207 (490)
-+++|.+.+ +.+.++++++.+ ..+++.++.. .|+++|+..|++++..+..++|.-.+|++.
T Consensus 157 Av~D~~~PdRIViG~~~~~a~~~~~ely~~~~~~~~p~l~t~~~------~AE~IKyaaNafLAtKIsFiNEia~ice~~ 230 (414)
T COG1004 157 AVYDFLYPDRIVIGVRSERAAAVLRELYAPFLRQDVPILFTDLR------EAELIKYAANAFLATKISFINEIANICEKV 230 (414)
T ss_pred hhhhccCCCeEEEccCChhHHHHHHHHHhhhhhcCCCEEEecch------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356787665 578888888776 4456665554 689999999999999999999999999999
Q ss_pred HHHhCCCCCHHHHHHHHhcccchhhHhHhHhHHhhccCcccccccCChhHHHHHHHHHHHHHHHHHHHHHcCCCchHHHH
Q psy9637 208 AEIHGWKLNYGGIALMWRGGCIIRSVFLGNIKAAFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSALLGIPTPAFAT 287 (490)
Q Consensus 208 ~~~~~~Gld~~~v~~i~~~g~~~~s~~l~~i~~~~~~~~~~~~~~~~~~f~~~l~~~~kDl~~~~~~A~~~gv~~P~~~a 287 (490)
|+|..++.+.+..... +.+..+.++|+..-.++.||++.++..|+++|.+.+++++
T Consensus 231 ------g~D~~~V~~gIGlD~R------------------IG~~fl~aG~GyGGsCfPKD~~AL~~~a~~~~~~~~ll~a 286 (414)
T COG1004 231 ------GADVKQVAEGIGLDPR------------------IGNHFLNAGFGYGGSCFPKDTKALIANAEELGYDPNLLEA 286 (414)
T ss_pred ------CCCHHHHHHHcCCCch------------------hhHhhCCCCCCCCCcCCcHhHHHHHHHHHhcCCchHHHHH
Confidence 9999999998765443 4444455666556667999999999999999999999999
Q ss_pred HHHHHHHHHhCCChhhhHHHHHHhhc
Q psy9637 288 ALAFYDGYRSKRLPANLLQAQRDYFG 313 (490)
Q Consensus 288 a~~~~~~~~~~g~~~~~~~a~rd~fg 313 (490)
+.+. ++..+..+++.+.+.++
T Consensus 287 vv~v-----N~~qk~~~~~~i~~~~~ 307 (414)
T COG1004 287 VVEV-----NERRKDKLAEKILNHLG 307 (414)
T ss_pred HHHH-----HHHHHHHHHHHHHHhcC
Confidence 9765 34445567777777766
|
|
| >PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.7e-20 Score=189.66 Aligned_cols=270 Identities=16% Similarity=0.083 Sum_probs=190.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHH-----------HcccC--------CCCeeccCCHHHHHh
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFL-----------ANEAK--------GTNIIGAHSLEELVK 64 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~-----------~~g~~--------~~~i~~~~s~~e~v~ 64 (490)
+++|+|||+|.||.+||.+|+++||+|++||++++..+... +.+.. ..++..+.+++++++
T Consensus 2 ~~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~ 81 (308)
T PRK06129 2 MGSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVA 81 (308)
T ss_pred CcEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhC
Confidence 46899999999999999999999999999999998777532 22211 112456788888776
Q ss_pred hCCCCcEEEEecCCCchHHHH-HHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCCCccccccCCccC
Q psy9637 65 NLKKPRRVMMLVKAGSAVDDF-IDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGGEDGARYGPSLM 143 (490)
Q Consensus 65 ~l~~~dvIil~vp~~~~v~~v-l~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg~~~a~~G~~im 143 (490)
. +|+|+.|+|...+++.. +..+.+.. +++++|.++|+ .....+..+.+...+..+.+.|+++.... ....|
T Consensus 82 ~---ad~Vi~avpe~~~~k~~~~~~l~~~~-~~~~ii~ssts-~~~~~~la~~~~~~~~~~~~hp~~p~~~~---~lvei 153 (308)
T PRK06129 82 D---ADYVQESAPENLELKRALFAELDALA-PPHAILASSTS-ALLASAFTEHLAGRERCLVAHPINPPYLI---PVVEV 153 (308)
T ss_pred C---CCEEEECCcCCHHHHHHHHHHHHHhC-CCcceEEEeCC-CCCHHHHHHhcCCcccEEEEecCCCcccC---ceEEE
Confidence 6 89999999997655554 45555544 55666665555 34556666666667788899999753211 12445
Q ss_pred CC---CCcchHHHHHHHHHhhCCceeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Q psy9637 144 PG---GNPAAWPALKPIFQKLNPSFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGI 220 (490)
Q Consensus 144 ~G---G~~~a~~~v~~ll~~l~~~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~~~v 220 (490)
++ ++++++++++++++.+|.+++++++.+ .| . ++||+ ..+.++|++.++++. |+|++++
T Consensus 154 v~~~~t~~~~~~~~~~~~~~lG~~~v~v~~~~--~G---~---i~nrl----~~a~~~EA~~l~~~g------~~~~~~i 215 (308)
T PRK06129 154 VPAPWTAPATLARAEALYRAAGQSPVRLRREI--DG---F---VLNRL----QGALLREAFRLVADG------VASVDDI 215 (308)
T ss_pred eCCCCCCHHHHHHHHHHHHHcCCEEEEecCCC--cc---H---HHHHH----HHHHHHHHHHHHHcC------CCCHHHH
Confidence 64 889999999999999999999998754 22 2 44553 447999999999998 9999999
Q ss_pred HHHHhcccchhhHhHhHhHHhhccCcccccccCChhHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhCCC
Q psy9637 221 ALMWRGGCIIRSVFLGNIKAAFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSALLGIPTPAFATALAFYDGYRSKRL 300 (490)
Q Consensus 221 ~~i~~~g~~~~s~~l~~i~~~~~~~~~~~~~~~~~~f~~~l~~~~kDl~~~~~~A~~~gv~~P~~~aa~~~~~~~~~~g~ 300 (490)
.++++.|... ++.+ ..|.....++.+.| ....+.||.++..+.+.+.+.|.|++..-....-.....-+
T Consensus 216 d~~~~~~~g~-~~~~--------~gp~~~~d~~~~~g--~~~~~~k~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (308)
T PRK06129 216 DAVIRDGLGL-RWSF--------MGPFETIDLNAPGG--VADYAQRYGPMYRRMAAERGQPVPWDGELVARVEAERRAAL 284 (308)
T ss_pred HHHHHhccCC-CccC--------cCHHHHHhcccccc--HHHHHHHHHHHHHhhccccCCCchhhHHHHHHHHHHHHHHc
Confidence 9999876532 2111 12222222344544 56678999999999999999999998766654334443333
Q ss_pred h---hhhHHHHHH
Q psy9637 301 P---ANLLQAQRD 310 (490)
Q Consensus 301 ~---~~~~~a~rd 310 (490)
+ -+..+..||
T Consensus 285 ~~~~~~~~~~~~~ 297 (308)
T PRK06129 285 PLDQLAARQAWRD 297 (308)
T ss_pred CCCCHHHHHHHHH
Confidence 3 234455555
|
|
| >PLN02353 probable UDP-glucose 6-dehydrogenase | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.4e-20 Score=194.20 Aligned_cols=272 Identities=15% Similarity=0.143 Sum_probs=203.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHHC--CCeEEEEeCChHHHHHHHHcccC--------------CCCeeccCCHHHHHhhCC
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDH--GFTVVAYNRTTAKVDSFLANEAK--------------GTNIIGAHSLEELVKNLK 67 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~--G~~V~v~dr~~~~~~~l~~~g~~--------------~~~i~~~~s~~e~v~~l~ 67 (490)
||+|+|||+|.+|..+|..|+++ ||+|++||+++++++.+.+.... +.++..++++.+.+..
T Consensus 1 ~m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~-- 78 (473)
T PLN02353 1 MVKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAE-- 78 (473)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHhc--
Confidence 47999999999999999999988 48899999999999987653211 1235667777776666
Q ss_pred CCcEEEEecCCCc--------------hHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHc--cc--cccccCC
Q psy9637 68 KPRRVMMLVKAGS--------------AVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAK--GL--LYVGCGV 129 (490)
Q Consensus 68 ~~dvIil~vp~~~--------------~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~--gi--~~ld~~v 129 (490)
+|+||+|||++. .++++++.+.+.++++++||--||..+.++.+..+.+.+. |. +..-+|-
T Consensus 79 -advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~~~~g~~f~v~~~PE 157 (473)
T PLN02353 79 -ADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGINFQILSNPE 157 (473)
T ss_pred -CCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHhhCCCCCeEEEECCC
Confidence 899999997553 4677889999999999999999999999998888777653 42 2333443
Q ss_pred CCCcccccc---CC-ccCCCCC-c----chHHHHHHHHHhhCC--ceeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy9637 130 SGGEDGARY---GP-SLMPGGN-P----AAWPALKPIFQKLNP--SFETSAPTPKPQRDKKEFLENIRQALYASKIVSYA 198 (490)
Q Consensus 130 sGg~~~a~~---G~-~im~GG~-~----~a~~~v~~ll~~l~~--~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~a 198 (490)
.=-+-.+.. -+ .+++||. + ++.++++.+++.+.. .+..+.. ..|+++|++.|++.+.+++..+
T Consensus 158 rl~~G~a~~d~~~p~riViG~~~~~~~~~a~~~~~~lY~~~~~~~~i~~~s~------~~AE~~K~~eN~~ra~~Iaf~N 231 (473)
T PLN02353 158 FLAEGTAIEDLFKPDRVLIGGRETPEGQKAVQALKDVYAHWVPEERIITTNL------WSAELSKLAANAFLAQRISSVN 231 (473)
T ss_pred ccCCCCcccccCCCCEEEEccCCchhhHHHHHHHHHHHHHhhcCCCEEecCH------HHHHHHHHHHHHHHHHHHHHHH
Confidence 222222211 12 4566885 2 357788888888752 3333333 3799999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHhcccchhhHhHhHhHHhhccCcccccccCChhHHHHHHHHHHHHHHHHHHHHHc
Q psy9637 199 QGFMLMRQAAEIHGWKLNYGGIALMWRGGCIIRSVFLGNIKAAFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSALL 278 (490)
Q Consensus 199 E~~~la~~a~~~~~~Gld~~~v~~i~~~g~~~~s~~l~~i~~~~~~~~~~~~~~~~~~f~~~l~~~~kDl~~~~~~A~~~ 278 (490)
|...+|++. |+|..++.+.+.....+ ....+.|+++..-.++.||...++..+++.
T Consensus 232 Ela~lce~~------giD~~eV~~~~~~d~ri------------------g~~~l~PG~G~GG~ClpkD~~~L~~~a~~~ 287 (473)
T PLN02353 232 AMSALCEAT------GADVSQVSHAVGKDSRI------------------GPKFLNASVGFGGSCFQKDILNLVYICECN 287 (473)
T ss_pred HHHHHHHHh------CCCHHHHHHHhCCCCcC------------------CCCCCCCCCCCCCcchhhhHHHHHHHHHHc
Confidence 999999999 99999999987644322 112334555445567899999999999999
Q ss_pred CCC--chHHHHHHHHHHHHHhCCChhhhHHHHHHhhc
Q psy9637 279 GIP--TPAFATALAFYDGYRSKRLPANLLQAQRDYFG 313 (490)
Q Consensus 279 gv~--~P~~~aa~~~~~~~~~~g~~~~~~~a~rd~fg 313 (490)
|++ .+++.++. ..++..+..+++.+.+.+.
T Consensus 288 g~~~~~~l~~~~~-----~iN~~~~~~vv~~~~~~l~ 319 (473)
T PLN02353 288 GLPEVAEYWKQVI-----KMNDYQKSRFVNRVVSSMF 319 (473)
T ss_pred CCchHHHHHHHHH-----HHHHhhHHHHHHHHHHHhh
Confidence 998 78888777 3566777777777766654
|
|
| >TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.1e-21 Score=197.44 Aligned_cols=116 Identities=35% Similarity=0.688 Sum_probs=106.5
Q ss_pred ceeecCCCCcchhHHhhhhHHHHHHHHHHHHHHHHHh-hcCCChHHHHHHHHHhccCc-chhHHHHHHHHHhcccCCCCC
Q psy9637 349 CDWVGEQGAGHFVKMVHNGIEYGDMQLICEAYHLMTG-ALGMSHDEMSAVFEDWNKGE-LDSFLIEITKDILKFKDTDGA 426 (490)
Q Consensus 349 ~~~~g~~g~gh~vkmvhngiey~~m~~~~E~~~~~~~-~~~~~~~~~~~~~~~w~~g~-~~s~l~~~~~~~~~~~~~~~~ 426 (490)
+.|+|+.|+||++|||||+++|++|++++|+|.++++ ++|+ |+.++++.|+.|+ ++||+++++.++++++
T Consensus 158 ~~~~G~~G~~~~~K~~~n~l~~~~~~~~aE~~~l~~~~g~~l---d~~~~~~i~~~g~~~~s~~l~~~~~~~~~~----- 229 (298)
T TIGR00872 158 YLYCGPCGSGHFVKMVHNGIEYGMMAAIAEGFEILRNSQFDF---DIPEVARVWRRGSVIRSWLLDLTAIAFRES----- 229 (298)
T ss_pred EEEECCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc---CHHHHHHHHcCCchhHhHHHHHHHHHHhcC-----
Confidence 6689999999999999999999999999999999998 3456 6677777899998 7999999999999863
Q ss_pred cchhhhccccCCCcchHHHHHHHHhcCCCchhhHHHHHHHhhccCc
Q psy9637 427 PLVEKIKDYAGQKGTGKWTAISALDYGVPVTLIGESVFSRCLSSLF 472 (490)
Q Consensus 427 ~~l~~i~~~~~~~g~g~w~~~~a~~~~~p~~~i~~a~~~r~~s~~~ 472 (490)
+.++.+.+.+.++||+||+|++|.++|+|+|+|++||+.|+.|..+
T Consensus 230 ~~~~~~~~~~~~~~~~r~~v~~a~~~g~p~P~~~~al~~~~~~~~~ 275 (298)
T TIGR00872 230 PDLAEFSGRVSDSGEGRWTVIAAIDLGVPAPVIATSLQSRFASRDL 275 (298)
T ss_pred CcHHHHHHHHHhhccHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC
Confidence 4688899999999999999999999999999999999999999887
|
This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle. |
| >COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.7e-20 Score=184.04 Aligned_cols=266 Identities=17% Similarity=0.220 Sum_probs=204.8
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHccc---------------CCCCeeccCCHHHHHhhCCCC
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEA---------------KGTNIIGAHSLEELVKNLKKP 69 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~---------------~~~~i~~~~s~~e~v~~l~~~ 69 (490)
++|||||||.+|.++|..++++|++|++||.++.+++.+..... ...+++.++++.++.. |
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~~l~~----~ 85 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDPEELKE----C 85 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecChhhccc----C
Confidence 68999999999999999999999999999999999988754111 1245666777777653 8
Q ss_pred cEEEEecCCCc---------hHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHc--cccc-cccCCCCCccccc
Q psy9637 70 RRVMMLVKAGS---------AVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAK--GLLY-VGCGVSGGEDGAR 137 (490)
Q Consensus 70 dvIil~vp~~~---------~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~--gi~~-ld~~vsGg~~~a~ 137 (490)
|++|+|||++- .+.+..+.+.+.|++|++||--||+.|.+|++....+.+. |..| .|..+.-.|+...
T Consensus 86 dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~~~~Df~laysPERv~ 165 (436)
T COG0677 86 DVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLKFGEDFYLAYSPERVL 165 (436)
T ss_pred CEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCcccceeeEeeCccccC
Confidence 99999999863 3567778999999999999999999999999999777664 6666 5777777777666
Q ss_pred cCCc--------cCCCC-CcchHHHHHHHHHhhCCceeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9637 138 YGPS--------LMPGG-NPAAWPALKPIFQKLNPSFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAA 208 (490)
Q Consensus 138 ~G~~--------im~GG-~~~a~~~v~~ll~~l~~~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~ 208 (490)
-|.. =++|| +++..+.+..+++.+-...+.+... ..|+++|++.|.+...+++..+|...++++.
T Consensus 166 PG~~~~el~~~~kVIgG~tp~~~e~a~~lY~~iv~~~~~vts~-----~tAEm~Kl~EN~fRdVNIALaNElali~~~~- 239 (436)
T COG0677 166 PGNVLKELVNNPKVIGGVTPKCAELAAALYKTIVEGVIPVTSA-----RTAEMVKLTENTFRDVNIALANELALICNAM- 239 (436)
T ss_pred CCchhhhhhcCCceeecCCHHHHHHHHHHHHHheEEEEEcCCh-----HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh-
Confidence 5542 24566 5677788888888886654443332 3799999999999999999999999999999
Q ss_pred HHhCCCCCHHHHHHHHhcccchhhHhHhHhHHhhccCcccccccCChhHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHH
Q psy9637 209 EIHGWKLNYGGIALMWRGGCIIRSVFLGNIKAAFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSALLGIPTPAFATA 288 (490)
Q Consensus 209 ~~~~~Gld~~~v~~i~~~g~~~~s~~l~~i~~~~~~~~~~~~~~~~~~f~~~l~~~~kDl~~~~~~A~~~gv~~P~~~aa 288 (490)
|+|..+++++.+.- |. -..+.|+..-.-.+...|--.++..|+++|.++.+++.+
T Consensus 240 -----GIdvwevIeaAnt~------------------P~--~~~~~PGpGvGGHCIpvDP~fl~~ka~~yg~~~rlI~tA 294 (436)
T COG0677 240 -----GIDVWEVIEAANTK------------------PR--VNIFYPGPGVGGHCIPVDPYFLTWKAPEYGLPARLIRTA 294 (436)
T ss_pred -----CCcHHHHHHHhccC------------------Cc--eeecCCCCCCCCcccccCchheeecccccCCchHHHHHH
Confidence 99999998885322 22 233444433344556677777888999999999999988
Q ss_pred HHHHHHHHhCCChhhhHHHHHH
Q psy9637 289 LAFYDGYRSKRLPANLLQAQRD 310 (490)
Q Consensus 289 ~~~~~~~~~~g~~~~~~~a~rd 310 (490)
.++ +.++|...+..+.+
T Consensus 295 reI-----N~~mP~~Vv~~~~~ 311 (436)
T COG0677 295 REI-----NDSMPRHVVDRVKE 311 (436)
T ss_pred HHH-----hccCCHHHHHHHHH
Confidence 765 56667554444443
|
|
| >PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.6e-19 Score=181.47 Aligned_cols=201 Identities=8% Similarity=0.025 Sum_probs=157.7
Q ss_pred CcEEEEcccHH--------------------HHHHHHHHHHCCCeEEEEeCChH-----HHHHHHHcccCCCCeeccCCH
Q psy9637 5 GDIGLIGLAVM--------------------GQNLILNMNDHGFTVVAYNRTTA-----KVDSFLANEAKGTNIIGAHSL 59 (490)
Q Consensus 5 ~~IgiIGlG~M--------------------G~~lA~~L~~~G~~V~v~dr~~~-----~~~~l~~~g~~~~~i~~~~s~ 59 (490)
|||.|.|.|+- |.+||.+|+++||+|++|||+++ +.+.+.+.| +..+.++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~MA~~La~aG~~V~v~Dr~~~~l~~~~~~~l~~~G-----i~~asd~ 75 (342)
T PRK12557 1 MKVSVYGAGNQKLYLEQLNLPEKFGGEPPYGGSRMAIEFAEAGHDVVLAEPNRSILSEELWKKVEDAG-----VKVVSDD 75 (342)
T ss_pred CeeEEEcCcchhHHHHHhCCHHhcCCCCCcCHHHHHHHHHhCCCeEEEEECCHHHhhHHHHHHHHHCC-----CEEeCCH
Confidence 47888888864 78899999999999999999987 344454444 3457788
Q ss_pred HHHHhhCCCCcEEEEecCCCchHHHHHHhhcccCCCCCEEEcCCCCChHHH-HHHHHHHH----Hcccccc-ccCCCCCc
Q psy9637 60 EELVKNLKKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDT-DRRSKALE----AKGLLYV-GCGVSGGE 133 (490)
Q Consensus 60 ~e~v~~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~-~~~~~~l~----~~gi~~l-d~~vsGg~ 133 (490)
.+++.. +|+||+|+|++..+++++.++.+.++++.+|||+||+.+... ....+.+. ..|++++ ++++.|++
T Consensus 76 ~eaa~~---ADvVIlaVP~~~~v~~Vl~~L~~~L~~g~IVId~ST~~~~~~s~~l~~~l~~~~~~~gi~~~~p~~v~Gae 152 (342)
T PRK12557 76 AEAAKH---GEIHILFTPFGKKTVEIAKNILPHLPENAVICNTCTVSPVVLYYSLEGELRTKRKDVGISSMHPAAVPGTP 152 (342)
T ss_pred HHHHhC---CCEEEEECCCcHHHHHHHHHHHhhCCCCCEEEEecCCCHHHHHHHHHHHhcccccccCeeecCCccccccc
Confidence 888776 899999999976599999999999999999999999987766 33334443 3466665 44455554
Q ss_pred cccc----cCC-ccCCCCCcchHHHHHHHHHhhCCceeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9637 134 DGAR----YGP-SLMPGGNPAAWPALKPIFQKLNPSFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAA 208 (490)
Q Consensus 134 ~~a~----~G~-~im~GG~~~a~~~v~~ll~~l~~~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~ 208 (490)
.+.. .|+ +...+++++.+++++++|+.++.++++.++ + .+..+|+++|++.+..+++.+|++.+++++
T Consensus 153 ~g~l~Vm~gg~t~~~~~~~~e~~e~v~~LL~a~G~~v~~~~~-g-----~~~~vk~~~n~l~av~~a~~aE~~~l~~~~- 225 (342)
T PRK12557 153 QHGHYVIAGKTTNGTELATEEQIEKCVELAESIGKEPYVVPA-D-----VVSAVADMGSLVTAVALSGVLDYYSVGTKI- 225 (342)
T ss_pred cchheEEeCCCcccccCCCHHHHHHHHHHHHHcCCEEEEeCH-H-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 3321 122 233445899999999999999998877664 3 578999999999999999999999999999
Q ss_pred HHhCCCCCHHHHHHHHh
Q psy9637 209 EIHGWKLNYGGIALMWR 225 (490)
Q Consensus 209 ~~~~~Gld~~~v~~i~~ 225 (490)
|+++.++++-+.
T Consensus 226 -----~~~p~~~~~~~~ 237 (342)
T PRK12557 226 -----IKAPKEMIEKQI 237 (342)
T ss_pred -----CCCHHHHHHHHH
Confidence 999998887753
|
|
| >PRK08229 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=3e-19 Score=183.02 Aligned_cols=265 Identities=14% Similarity=0.118 Sum_probs=178.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCC------------CCeeccCCHHHHHhhCCCCcE
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKG------------TNIIGAHSLEELVKNLKKPRR 71 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~------------~~i~~~~s~~e~v~~l~~~dv 71 (490)
||||+|||+|.||..+|.+|+++||+|++|||++. .+.+.+.+... .++...+++ +.+. .+|+
T Consensus 2 ~mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~D~ 76 (341)
T PRK08229 2 MARICVLGAGSIGCYLGGRLAAAGADVTLIGRARI-GDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALA---TADL 76 (341)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHH-HHHHHhcCceeecCCCcceecccceeEeccCh-hhcc---CCCE
Confidence 47899999999999999999999999999999753 46665544320 012223444 3333 4899
Q ss_pred EEEecCCCchHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccccccc--C---CCCCccccc---cCCccC
Q psy9637 72 VMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGC--G---VSGGEDGAR---YGPSLM 143 (490)
Q Consensus 72 Iil~vp~~~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~--~---vsGg~~~a~---~G~~im 143 (490)
||+|||+. .+.++++.+.+.+.++.+||++.|+.. ......+.+.+ ..++++ + +++++..+. .|. +.
T Consensus 77 vil~vk~~-~~~~~~~~l~~~~~~~~iii~~~nG~~-~~~~l~~~~~~--~~~~~g~~~~~~~~~~pg~~~~~~~g~-l~ 151 (341)
T PRK08229 77 VLVTVKSA-ATADAAAALAGHARPGAVVVSFQNGVR-NADVLRAALPG--ATVLAGMVPFNVISRGPGAFHQGTSGA-LA 151 (341)
T ss_pred EEEEecCc-chHHHHHHHHhhCCCCCEEEEeCCCCC-cHHHHHHhCCC--CcEEEEEEEEEEEecCCceEEecCCCc-eE
Confidence 99999985 778899999999999999999988653 33333333322 223333 2 344443333 333 22
Q ss_pred CCCCcchHHHHHHHHHhhCCceeeCCCCCCCCCCHHHHHHHHHHHHHHHH--------------------HHHHHHHHHH
Q psy9637 144 PGGNPAAWPALKPIFQKLNPSFETSAPTPKPQRDKKEFLENIRQALYASK--------------------IVSYAQGFML 203 (490)
Q Consensus 144 ~GG~~~a~~~v~~ll~~l~~~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~--------------------~~~~aE~~~l 203 (490)
++ +.+.++++.++|+..+.++.+.++.+ ...+.|++.|++.... ..++.|++.+
T Consensus 152 ~~-~~~~~~~~~~~l~~~g~~~~~~~di~-----~~~w~Kl~~N~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~E~~~v 225 (341)
T PRK08229 152 IE-ASPALRPFAAAFARAGLPLVTHEDMR-----AVQWAKLLLNLNNAVNALSGLPLKEELAQRSYRRCLALAQREALRV 225 (341)
T ss_pred ec-CCchHHHHHHHHHhcCCCceecchhH-----HHHHHHHHHHhccHHHHHhCCchHHHhcCchHHHHHHHHHHHHHHH
Confidence 22 34667899999999998888888764 5789999999754434 3778999999
Q ss_pred HHHHHHHhCCCCCHHHHHHHHhccc----chhhHhHhHhHHhhccCcccccccCChhHHHHHHHHHHHHH----------
Q psy9637 204 MRQAAEIHGWKLNYGGIALMWRGGC----IIRSVFLGNIKAAFDKNPALSNLLLDPFFKDAIHATQSSWR---------- 269 (490)
Q Consensus 204 a~~a~~~~~~Gld~~~v~~i~~~g~----~~~s~~l~~i~~~~~~~~~~~~~~~~~~f~~~l~~~~kDl~---------- 269 (490)
+++. |++++.+.++...+. .+.+.+++.+...... .... ....+++|+.
T Consensus 226 a~a~------Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~-----~~~Sm~~D~~~~r~tEi~~i 288 (341)
T PRK08229 226 LKAA------GIRPARLTPLPPAWIPRLLRLPDPLFRRLAGRMLA------IDPL-----ARSSMSDDLAAGRATEIDWI 288 (341)
T ss_pred HHHc------CCCccccCCCChhhhhhhhcCChHHHHHHHHHhhc------cCCc-----cCchHHHHHHcCCcchHHHH
Confidence 9999 888765433222110 0122233322111100 0000 1235888998
Q ss_pred --HHHHHHHHcCCCchHHHHHHHHHHHHHhCCCh
Q psy9637 270 --AVVSQSALLGIPTPAFATALAFYDGYRSKRLP 301 (490)
Q Consensus 270 --~~~~~A~~~gv~~P~~~aa~~~~~~~~~~g~~ 301 (490)
.+++.|+++|+++|..+.+++.++.+...|.+
T Consensus 289 ~G~i~~~a~~~gv~~P~~~~~~~~~~~~~~~~~~ 322 (341)
T PRK08229 289 NGEIVRLAGRLGAPAPVNARLCALVHEAERAGAR 322 (341)
T ss_pred hhHHHHHHHHcCCCCcHHHHHHHHHHHHHhCCCc
Confidence 69999999999999999999999999887665
|
|
| >PLN02688 pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.2e-18 Score=172.46 Aligned_cols=255 Identities=18% Similarity=0.133 Sum_probs=168.1
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC----eEEEE-eCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCC
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGF----TVVAY-NRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAG 79 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~----~V~v~-dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~ 79 (490)
|||||||+|.||.+|+++|.++|| +|++| ||++++.+.+.+.+. ..+.++.+++++ +|+||+|||+
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~g~-----~~~~~~~e~~~~---aDvVil~v~~- 71 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSLGV-----KTAASNTEVVKS---SDVIILAVKP- 71 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHcCC-----EEeCChHHHHhc---CCEEEEEECc-
Confidence 589999999999999999999999 89999 999999888876543 357788888876 8999999976
Q ss_pred chHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccccc-ccCCCCCccccccCC-ccCCCCCcchHHHHHHH
Q psy9637 80 SAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYV-GCGVSGGEDGARYGP-SLMPGGNPAAWPALKPI 157 (490)
Q Consensus 80 ~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~l-d~~vsGg~~~a~~G~-~im~GG~~~a~~~v~~l 157 (490)
..+++++.++.+.+.++++||+..++......+ +.+. .. +++ .+|..+...+..... +...+++++.+++++++
T Consensus 72 ~~~~~vl~~l~~~~~~~~~iIs~~~g~~~~~l~--~~~~-~~-~vvr~mP~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l 147 (266)
T PLN02688 72 QVVKDVLTELRPLLSKDKLLVSVAAGITLADLQ--EWAG-GR-RVVRVMPNTPCLVGEAASVMSLGPAATADDRDLVATL 147 (266)
T ss_pred HHHHHHHHHHHhhcCCCCEEEEecCCCcHHHHH--HHcC-CC-CEEEECCCcHHHHhCceEEEEeCCCCCHHHHHHHHHH
Confidence 689999999988888999988775554333222 2221 11 566 367666554443333 44556688999999999
Q ss_pred HHhhCCceeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhcccchhhHhHhH
Q psy9637 158 FQKLNPSFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGGCIIRSVFLGN 237 (490)
Q Consensus 158 l~~l~~~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~~~v~~i~~~g~~~~s~~l~~ 237 (490)
|+.+|. ++++++.- -+.....--.-.++.+..+.+++|+ +.+. |+|+++..+++..+......++..
T Consensus 148 ~~~~G~-~~~~~e~~---~d~~~~~~g~g~a~~~~~~~a~~ea---~~~~------Gl~~~~a~~~~~~~~~gs~~l~~~ 214 (266)
T PLN02688 148 FGAVGK-IWVVDEKL---LDAVTGLSGSGPAYIFLAIEALADG---GVAA------GLPRDVALSLAAQTVLGAAKMVLE 214 (266)
T ss_pred HHhCCC-EEEeCHHH---cchhHhhhcCHHHHHHHHHHHHHHH---HHHc------CCCHHHHHHHHHHHHHHHHHHHHh
Confidence 999998 77764310 0000000001123456667777777 5556 999999999987765444433322
Q ss_pred hHHhhccCcc-cccccCChhHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhC
Q psy9637 238 IKAAFDKNPA-LSNLLLDPFFKDAIHATQSSWRAVVSQSALLGIPTPAFATALAFYDGYRSK 298 (490)
Q Consensus 238 i~~~~~~~~~-~~~~~~~~~f~~~l~~~~kDl~~~~~~A~~~gv~~P~~~aa~~~~~~~~~~ 298 (490)
....+. +.+..-.|+ --....++..++.|++-.+.++....++++.+.
T Consensus 215 ----~~~~~~~l~~~v~spg---------G~t~~~l~~l~~~g~~~~~~~a~~~~~~r~~~~ 263 (266)
T PLN02688 215 ----TGKHPGQLKDMVTSPG---------GTTIAGVHELEKGGFRAALMNAVVAAAKRSREL 263 (266)
T ss_pred ----cCCCHHHHHHhCCCCc---------hHHHHHHHHHHHCChHHHHHHHHHHHHHHHHHh
Confidence 011111 111222221 123445566666777777777777777766543
|
|
| >PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.3e-18 Score=181.33 Aligned_cols=201 Identities=14% Similarity=0.110 Sum_probs=155.9
Q ss_pred CCCCCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHc------------cc---CCCCeeccCCHHHHHhh
Q psy9637 1 MAAKGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLAN------------EA---KGTNIIGAHSLEELVKN 65 (490)
Q Consensus 1 M~~~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~------------g~---~~~~i~~~~s~~e~v~~ 65 (490)
|++.+||||||+|.||.+||.+|+++||+|++||+++++.+.+.+. .. ...++..++++++++++
T Consensus 1 ~~~i~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~~ 80 (495)
T PRK07531 1 MTMIMKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVAG 80 (495)
T ss_pred CCCcCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhcC
Confidence 6667899999999999999999999999999999999988765321 00 01135678888888877
Q ss_pred CCCCcEEEEecCCCchHHHH-HHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCCCccccccCC-ccC
Q psy9637 66 LKKPRRVMMLVKAGSAVDDF-IDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGGEDGARYGP-SLM 143 (490)
Q Consensus 66 l~~~dvIil~vp~~~~v~~v-l~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg~~~a~~G~-~im 143 (490)
+|+|+.|+|+..+++.. +.++.+.++++ +||+++|+.+..+ .+.+.+..++..+++.|+... ..++ ..+
T Consensus 81 ---aD~Vieavpe~~~vk~~l~~~l~~~~~~~-~iI~SsTsgi~~s-~l~~~~~~~~r~~~~hP~nP~----~~~~Lvev 151 (495)
T PRK07531 81 ---ADWIQESVPERLDLKRRVLAEIDAAARPD-ALIGSSTSGFLPS-DLQEGMTHPERLFVAHPYNPV----YLLPLVEL 151 (495)
T ss_pred ---CCEEEEcCcCCHHHHHHHHHHHHhhCCCC-cEEEEcCCCCCHH-HHHhhcCCcceEEEEecCCCc----ccCceEEE
Confidence 99999999998777764 46676666655 5677777765543 555666667888899987622 2345 678
Q ss_pred CCCC---cchHHHHHHHHHhhCCceeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCCCCCHHH
Q psy9637 144 PGGN---PAAWPALKPIFQKLNPSFETSAPTPKPQRDKKEFLENIRQALYASKIVS-YAQGFMLMRQAAEIHGWKLNYGG 219 (490)
Q Consensus 144 ~GG~---~~a~~~v~~ll~~l~~~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~-~aE~~~la~~a~~~~~~Gld~~~ 219 (490)
++|+ ++.+++++++|+.++.++++++. .+.|++......+ ++|++.++++. |+++++
T Consensus 152 v~g~~t~~e~~~~~~~~~~~lG~~~v~~~k-------------~~~gfi~nrl~~a~~~EA~~L~~~g------~~s~~~ 212 (495)
T PRK07531 152 VGGGKTSPETIRRAKEILREIGMKPVHIAK-------------EIDAFVGDRLLEALWREALWLVKDG------IATTEE 212 (495)
T ss_pred cCCCCCCHHHHHHHHHHHHHcCCEEEeecC-------------CCcchhHHHHHHHHHHHHHHHHHcC------CCCHHH
Confidence 8886 68999999999999998887653 3456666666777 49999999999 999999
Q ss_pred HHHHHhcccc
Q psy9637 220 IALMWRGGCI 229 (490)
Q Consensus 220 v~~i~~~g~~ 229 (490)
+.++++.|..
T Consensus 213 id~~~~~g~g 222 (495)
T PRK07531 213 IDDVIRYSFG 222 (495)
T ss_pred HHHHHhhccC
Confidence 9999987753
|
|
| >PRK07679 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.6e-17 Score=165.76 Aligned_cols=243 Identities=12% Similarity=0.111 Sum_probs=159.9
Q ss_pred CCCCCcEEEEcccHHHHHHHHHHHHCC----CeEEEEeCChH-HHHHHHHc-ccCCCCeeccCCHHHHHhhCCCCcEEEE
Q psy9637 1 MAAKGDIGLIGLAVMGQNLILNMNDHG----FTVVAYNRTTA-KVDSFLAN-EAKGTNIIGAHSLEELVKNLKKPRRVMM 74 (490)
Q Consensus 1 M~~~~~IgiIGlG~MG~~lA~~L~~~G----~~V~v~dr~~~-~~~~l~~~-g~~~~~i~~~~s~~e~v~~l~~~dvIil 74 (490)
|+. |||+|||+|.||.+|+.+|.++| ++|++|||+++ +.+.+... +. ..+.++.++++. +|+||+
T Consensus 1 ~~~-mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~g~-----~~~~~~~e~~~~---aDvVil 71 (279)
T PRK07679 1 MSI-QNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKYGV-----KGTHNKKELLTD---ANILFL 71 (279)
T ss_pred CCC-CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhcCc-----eEeCCHHHHHhc---CCEEEE
Confidence 654 69999999999999999999998 89999999864 56776553 32 356788888776 899999
Q ss_pred ecCCCchHHHHHHhhcccCCCCCEEEcC-CCCChHHHHHHHHHHHHccccccccCCCCCcc---ccccC-CccCCCCC--
Q psy9637 75 LVKAGSAVDDFIDKLVPLLEKGDIIIDG-GNSEYQDTDRRSKALEAKGLLYVGCGVSGGED---GARYG-PSLMPGGN-- 147 (490)
Q Consensus 75 ~vp~~~~v~~vl~~l~~~l~~g~iiId~-s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg~~---~a~~G-~~im~GG~-- 147 (490)
|||+. .+.++++++.+.+.++.+||++ ++..+....+. ... ++||+++.+ .+..+ .+++++++
T Consensus 72 av~p~-~~~~vl~~l~~~~~~~~liIs~~aGi~~~~l~~~----~~~-----~~~v~r~mPn~~~~~~~~~t~~~~~~~~ 141 (279)
T PRK07679 72 AMKPK-DVAEALIPFKEYIHNNQLIISLLAGVSTHSIRNL----LQK-----DVPIIRAMPNTSAAILKSATAISPSKHA 141 (279)
T ss_pred EeCHH-HHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHH----cCC-----CCeEEEECCCHHHHHhcccEEEeeCCCC
Confidence 99985 7888889998888889999997 55543333321 112 356776644 44433 47777776
Q ss_pred -cchHHHHHHHHHhhCCcee------e--CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCCCCH
Q psy9637 148 -PAAWPALKPIFQKLNPSFE------T--SAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFM-LMRQAAEIHGWKLNY 217 (490)
Q Consensus 148 -~~a~~~v~~ll~~l~~~~~------~--~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~-la~~a~~~~~~Gld~ 217 (490)
++.++.++++|+.+|..+. + ++..| .| .+ .+..+.|++. .+.+. |+|.
T Consensus 142 ~~~~~~~v~~l~~~~G~~~~v~e~~~~~~~a~~G--sg----------pa----~~~~~~eal~e~~~~~------Gl~~ 199 (279)
T PRK07679 142 TAEHIQTAKALFETIGLVSVVEEEDMHAVTALSG--SG----------PA----YIYYVVEAMEKAAKKI------GLKE 199 (279)
T ss_pred CHHHHHHHHHHHHhCCcEEEeCHHHhhhHHHhhc--CH----------HH----HHHHHHHHHHHHHHHc------CCCH
Confidence 4588999999999998665 3 33332 11 11 2445555555 46666 9999
Q ss_pred HHHHHHHhcccchhhHhHhHhHHhhccCcccccccC-ChhHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Q psy9637 218 GGIALMWRGGCIIRSVFLGNIKAAFDKNPALSNLLL-DPFFKDAIHATQSSWRAVVSQSALLGIPTPAFATALAFYDGYR 296 (490)
Q Consensus 218 ~~v~~i~~~g~~~~s~~l~~i~~~~~~~~~~~~~~~-~~~f~~~l~~~~kDl~~~~~~A~~~gv~~P~~~aa~~~~~~~~ 296 (490)
+...+++.......+.++..- ...|......+ .|++. +...+...++.|+.--+.++....+++..
T Consensus 200 ~~a~~~~~~~~~gsa~~~~~~----~~~~~~l~~~v~spgg~---------t~~gl~~l~~~~~~~~i~~a~~~a~~r~~ 266 (279)
T PRK07679 200 DVAKSLILQTMIGAAEMLKAS----EKHPSILRKEITSPGGT---------TEAGIEVLQEHRFQQALISCITQATQRSH 266 (279)
T ss_pred HHHHHHHHHHHHHHHHHHHhc----CCCHHHHHHhcCCCchH---------HHHHHHHHHHCChHHHHHHHHHHHHHHHH
Confidence 999999877544433444320 12222222223 55542 23344444556666666666666665554
Q ss_pred h
Q psy9637 297 S 297 (490)
Q Consensus 297 ~ 297 (490)
.
T Consensus 267 ~ 267 (279)
T PRK07679 267 N 267 (279)
T ss_pred H
Confidence 3
|
|
| >PRK08507 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.7e-17 Score=160.89 Aligned_cols=192 Identities=18% Similarity=0.210 Sum_probs=139.9
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC--eEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGF--TVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAV 82 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v 82 (490)
|||+|||+|.||.+||.+|.++|+ +|++|||++++.+.+.+.+.. ..+.++.++. . +|+||+|||.. .+
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~----~~~~~~~~~~-~---aD~Vilavp~~-~~ 71 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGLV----DEIVSFEELK-K---CDVIFLAIPVD-AI 71 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCC----cccCCHHHHh-c---CCEEEEeCcHH-HH
Confidence 479999999999999999999996 789999999998887765531 1245666654 3 89999999995 77
Q ss_pred HHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccccccc-CCCCC----ccccc----cCC-ccCCC---CCcc
Q psy9637 83 DDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGC-GVSGG----EDGAR----YGP-SLMPG---GNPA 149 (490)
Q Consensus 83 ~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~-~vsGg----~~~a~----~G~-~im~G---G~~~ 149 (490)
.+++.++.+ ++++.+|+|.|++.........+. .+..|+++ |++|+ +..+. .|. .++++ ++++
T Consensus 72 ~~~~~~l~~-l~~~~iv~d~gs~k~~i~~~~~~~---~~~~~v~~hPmaG~e~~Gp~~a~~~l~~g~~~il~~~~~~~~~ 147 (275)
T PRK08507 72 IEILPKLLD-IKENTTIIDLGSTKAKIIESVPKH---IRKNFIAAHPMAGTENSGPKAAIKGLYEGKVVVLCDVEKSGEK 147 (275)
T ss_pred HHHHHHHhc-cCCCCEEEECccchHHHHHHHHHh---cCCCEEecCCcCcCchhhHHhccHHHhCCCeEEEecCCCCCHH
Confidence 888899999 889999999988754433322221 23568888 99875 44443 455 55554 4567
Q ss_pred hHHHHHHHHHhhCCceeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHh
Q psy9637 150 AWPALKPIFQKLNPSFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWR 225 (490)
Q Consensus 150 a~~~v~~ll~~l~~~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~~~v~~i~~ 225 (490)
.++.++++|+.+|.+++++++.+ ....++++.++.. ....++++.+. . +.+.+.+.++..
T Consensus 148 ~~~~v~~l~~~~G~~~~~~~~~~-----hD~~~a~vs~lph-~~a~~l~~~~~----~------~~~~~~~~~~~~ 207 (275)
T PRK08507 148 HQERAKEIFSGLGMRIVYMDAKE-----HDLHAAYISHLPH-IISFALANTVL----K------EEDERNIFDLAG 207 (275)
T ss_pred HHHHHHHHHHHhCCEEEEeCHHH-----HHHHHHHHhHHHH-HHHHHHHHHHH----h------cCChHHHHhhcc
Confidence 89999999999999999988764 5678999988865 33444444441 2 455555555543
|
|
| >PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.6e-16 Score=163.13 Aligned_cols=178 Identities=14% Similarity=0.193 Sum_probs=141.0
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchH
Q psy9637 4 KGDIGLIG-LAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAV 82 (490)
Q Consensus 4 ~~~IgiIG-lG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v 82 (490)
+++|+||| +|.||..+|+.|.++||+|++||+++. +++++++.. +|+||+|+|.. .+
T Consensus 98 ~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~------------------~~~~~~~~~---aDlVilavP~~-~~ 155 (374)
T PRK11199 98 LRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDW------------------DRAEDILAD---AGMVIVSVPIH-LT 155 (374)
T ss_pred cceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcc------------------hhHHHHHhc---CCEEEEeCcHH-HH
Confidence 46899998 999999999999999999999998631 245566665 89999999996 67
Q ss_pred HHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccccc-ccCCCCCccccccCC-ccCCCC-CcchHHHHHHHHH
Q psy9637 83 DDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYV-GCGVSGGEDGARYGP-SLMPGG-NPAAWPALKPIFQ 159 (490)
Q Consensus 83 ~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~l-d~~vsGg~~~a~~G~-~im~GG-~~~a~~~v~~ll~ 159 (490)
.+++.++.+ +++|.+|+|+|++.+.......+.+ ...|+ ..|++|+......|. .+++++ ++++++.++++++
T Consensus 156 ~~~~~~l~~-l~~~~iv~Dv~SvK~~~~~~~~~~~---~~~fvg~HPm~G~~~~~~~~~~vv~~~~~~~~~~~~~~~l~~ 231 (374)
T PRK11199 156 EEVIARLPP-LPEDCILVDLTSVKNAPLQAMLAAH---SGPVLGLHPMFGPDVGSLAKQVVVVCDGRQPEAYQWLLEQIQ 231 (374)
T ss_pred HHHHHHHhC-CCCCcEEEECCCccHHHHHHHHHhC---CCCEEeeCCCCCCCCcccCCCEEEEcCCCCchHHHHHHHHHH
Confidence 888888988 8999999999998755544444332 12588 668999877767776 566666 5678999999999
Q ss_pred hhCCceeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Q psy9637 160 KLNPSFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIAL 222 (490)
Q Consensus 160 ~l~~~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~~~v~~ 222 (490)
.+|.+++++++.+ ....++++..+ .++.+++++..+++ . +++.+.+.+
T Consensus 232 ~lG~~v~~~~~~~-----HD~~~a~vshL---pH~~a~al~~~l~~-~------~~~~~~~~~ 279 (374)
T PRK11199 232 VWGARLHRISAVE-----HDQNMAFIQAL---RHFATFAYGLHLAK-E------NVDLEQLLA 279 (374)
T ss_pred HCCCEEEECCHHH-----HHHHHHHHHHH---HHHHHHHHHHHHHH-c------CCCHHHHHH
Confidence 9999999988763 55678888733 88888888888876 5 778777655
|
|
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.9e-16 Score=158.02 Aligned_cols=174 Identities=20% Similarity=0.270 Sum_probs=130.6
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
|+|+|||+|.||..||..|.++|++|++||++++..+.+.+.+.. ....+..+.+.. +|+||+|+|.. .+.+
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~~----~~~~~~~~~~~~---aDlVilavp~~-~~~~ 72 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIERGLV----DEASTDLSLLKD---CDLVILALPIG-LLLP 72 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCc----ccccCCHhHhcC---CCEEEEcCCHH-HHHH
Confidence 479999999999999999999999999999999998888766532 112222344444 89999999985 7778
Q ss_pred HHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccc-cCCCCCc-cccccCC-ccCC----------CCCcchH
Q psy9637 85 FIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVG-CGVSGGE-DGARYGP-SLMP----------GGNPAAW 151 (490)
Q Consensus 85 vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld-~~vsGg~-~~a~~G~-~im~----------GG~~~a~ 151 (490)
+++++.+.++++.+|+|+++....... .+.+....|++ .|+.|++ .+...+. .++. +++++.+
T Consensus 73 ~~~~l~~~l~~~~ii~d~~Svk~~~~~----~~~~~~~~~v~~HPm~G~~~~g~~~a~~~lf~g~~~~l~p~~~~~~~~~ 148 (279)
T PRK07417 73 PSEQLIPALPPEAIVTDVGSVKAPIVE----AWEKLHPRFVGSHPMAGTAESGVEAGQRGLFKNRPWVLTPTENTDLNAL 148 (279)
T ss_pred HHHHHHHhCCCCcEEEeCcchHHHHHH----HHHHhhCCceeeCCcCCCCcchHHHhhHHHhCCCcEEEccCCCCCHHHH
Confidence 889999999999999999987644322 22333345887 5898876 4444443 3332 3577899
Q ss_pred HHHHHHHHhhCCceeeCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q psy9637 152 PALKPIFQKLNPSFETSAPTPKPQRDKKEFLENIRQALYASKIV 195 (490)
Q Consensus 152 ~~v~~ll~~l~~~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~ 195 (490)
+.++++++.+|..++++++.. ....++++.+.......+
T Consensus 149 ~~v~~l~~~lG~~~v~~~~~~-----hD~~~a~~shlp~~~a~~ 187 (279)
T PRK07417 149 AIVEELAVSLGSKIYTADPEE-----HDRAVALISHLPVMVSAA 187 (279)
T ss_pred HHHHHHHHHcCCEEEEcCHHH-----HHHHHHHHcchHHHHHHH
Confidence 999999999999998888753 567888887776554433
|
|
| >PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.1e-16 Score=160.54 Aligned_cols=192 Identities=10% Similarity=0.086 Sum_probs=138.8
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHc-------ccC------------CCCeeccCCHHHHHhh
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLAN-------EAK------------GTNIIGAHSLEELVKN 65 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~-------g~~------------~~~i~~~~s~~e~v~~ 65 (490)
++|+|||+|.||..||.+|+++||+|++||+++++++.+.+. +.. ..++..++++++.+++
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 81 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVAD 81 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhcC
Confidence 479999999999999999999999999999999998876431 110 0124556788777776
Q ss_pred CCCCcEEEEecCCCchHHH-HHHhhcccCCCCCEE-EcCCCCChHHHHHHHHHH-HHccccccccCCCCCccccccCCcc
Q psy9637 66 LKKPRRVMMLVKAGSAVDD-FIDKLVPLLEKGDII-IDGGNSEYQDTDRRSKAL-EAKGLLYVGCGVSGGEDGARYGPSL 142 (490)
Q Consensus 66 l~~~dvIil~vp~~~~v~~-vl~~l~~~l~~g~ii-Id~s~~~~~~~~~~~~~l-~~~gi~~ld~~vsGg~~~a~~G~~i 142 (490)
+|+||+|+|++..++. ++.++.+.++++.++ +++||..+....+..+.. +..|+||+ +|+++++ -..
T Consensus 82 ---aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~~~l~~~~~~~~r~~g~h~~-~Pv~~~~------Lve 151 (288)
T PRK09260 82 ---ADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSPTEIASFTKRPERVIAMHFF-NPVHKMK------LVE 151 (288)
T ss_pred ---CCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcccEEEEecC-CCcccCc------eEE
Confidence 9999999999877664 457788888888866 788887765544433221 12589999 8987752 266
Q ss_pred CCCC---CcchHHHHHHHHHhhCCceeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCHH
Q psy9637 143 MPGG---NPAAWPALKPIFQKLNPSFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWK-LNYG 218 (490)
Q Consensus 143 m~GG---~~~a~~~v~~ll~~l~~~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~G-ld~~ 218 (490)
|++| +++++++++++++.++..++++++.. | . +.|- .....++|++.+.+. | .+++
T Consensus 152 ~v~g~~t~~~~~~~~~~~l~~lg~~~v~v~d~~---G---f----~~nR---l~~~~~~ea~~~~~~-------gv~~~~ 211 (288)
T PRK09260 152 LIRGLETSDETVQVAKEVAEQMGKETVVVNEFP---G---F----VTSR---ISALVGNEAFYMLQE-------GVATAE 211 (288)
T ss_pred EeCCCCCCHHHHHHHHHHHHHcCCeEEEecCcc---c---H----HHHH---HHHHHHHHHHHHHHc-------CCCCHH
Confidence 7887 88999999999999999998888732 1 1 1122 223456677777654 4 4566
Q ss_pred HHHHHHhc
Q psy9637 219 GIALMWRG 226 (490)
Q Consensus 219 ~v~~i~~~ 226 (490)
++=.+++.
T Consensus 212 ~iD~~~~~ 219 (288)
T PRK09260 212 DIDKAIRL 219 (288)
T ss_pred HHHHHHHh
Confidence 66665543
|
|
| >PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.4e-16 Score=170.86 Aligned_cols=190 Identities=15% Similarity=0.199 Sum_probs=145.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHH-----------HHcccC--------CCCeeccCCHHHHHh
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSF-----------LANEAK--------GTNIIGAHSLEELVK 64 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l-----------~~~g~~--------~~~i~~~~s~~e~v~ 64 (490)
..+|||||+|.||..||.+|+++||+|++||++++++++. .+.|.- -.+++++++++++.
T Consensus 7 i~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~~~- 85 (507)
T PRK08268 7 IATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALADLA- 85 (507)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHHhC-
Confidence 3679999999999999999999999999999999988873 333310 12466788887654
Q ss_pred hCCCCcEEEEecCCCchHHHHH-HhhcccCCCCCEE-EcCCCCChHHHHHHHHHHH--H--ccccccc-cCCCCCccccc
Q psy9637 65 NLKKPRRVMMLVKAGSAVDDFI-DKLVPLLEKGDII-IDGGNSEYQDTDRRSKALE--A--KGLLYVG-CGVSGGEDGAR 137 (490)
Q Consensus 65 ~l~~~dvIil~vp~~~~v~~vl-~~l~~~l~~g~ii-Id~s~~~~~~~~~~~~~l~--~--~gi~~ld-~~vsGg~~~a~ 137 (490)
+ +|+||.|||.+.+++..+ .++...++++.++ .|+||..+. ++.+.+. + .|+||++ +|++.
T Consensus 86 ~---aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i~---~la~~~~~p~r~~G~hff~Pa~v~~------ 153 (507)
T PRK08268 86 D---CDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSIT---AIAAALKHPERVAGLHFFNPVPLMK------ 153 (507)
T ss_pred C---CCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHH---HHHhhcCCcccEEEEeecCCcccCe------
Confidence 4 899999999999998876 5666667788888 488887654 2333332 2 3999999 78872
Q ss_pred cCCccCCCC---CcchHHHHHHHHHhhCCceeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q psy9637 138 YGPSLMPGG---NPAAWPALKPIFQKLNPSFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWK 214 (490)
Q Consensus 138 ~G~~im~GG---~~~a~~~v~~ll~~l~~~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~G 214 (490)
-..|++| ++++++++.++++.++...+++++.. | .+.|-+.. ..++|++.++++. +
T Consensus 154 --LvEvv~g~~Ts~~~~~~~~~l~~~lgk~pv~v~d~p---G-------fi~Nrll~---~~~~Ea~~l~~~g------~ 212 (507)
T PRK08268 154 --LVEVVSGLATDPAVADALYALARAWGKTPVRAKDTP---G-------FIVNRAAR---PYYTEALRVLEEG------V 212 (507)
T ss_pred --eEEEeCCCCCCHHHHHHHHHHHHHcCCceEEecCCC---C-------hHHHHHHH---HHHHHHHHHHHcC------C
Confidence 2555654 88999999999999999998888642 1 24444443 4899999999997 8
Q ss_pred CCHHHHHHHHhcc
Q psy9637 215 LNYGGIALMWRGG 227 (490)
Q Consensus 215 ld~~~v~~i~~~g 227 (490)
++++++-++++.+
T Consensus 213 ~~~~~iD~al~~~ 225 (507)
T PRK08268 213 ADPATIDAILREA 225 (507)
T ss_pred CCHHHHHHHHHhc
Confidence 9999999998753
|
|
| >PRK08655 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.1e-15 Score=161.37 Aligned_cols=245 Identities=13% Similarity=0.162 Sum_probs=169.1
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 5 GDIGLIG-LAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 5 ~~IgiIG-lG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
|+|+||| +|.||..+|..|.++|++|++|||++++...+..... +..+.++.+.+.. +|+||+|+|.. .+.
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~g----v~~~~~~~e~~~~---aDvVIlavp~~-~~~ 72 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKELG----VEYANDNIDAAKD---ADIVIISVPIN-VTE 72 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHcC----CeeccCHHHHhcc---CCEEEEecCHH-HHH
Confidence 4899997 8999999999999999999999999888655544321 2345677777766 89999999994 778
Q ss_pred HHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccccccc-CCCCCccccccCC-ccCCCC---CcchHHHHHHHH
Q psy9637 84 DFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGC-GVSGGEDGARYGP-SLMPGG---NPAAWPALKPIF 158 (490)
Q Consensus 84 ~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~-~vsGg~~~a~~G~-~im~GG---~~~a~~~v~~ll 158 (490)
+++.++.+.++++.+|+|++++.........+. ...+..|+++ |++|.......|. .+++.+ +++.+++++++|
T Consensus 73 ~vl~~l~~~l~~~~iViDvsSvK~~~~~~l~~~-~~~~~~~V~~HPmaGp~~~~~~g~~~il~p~~~~~~~~~~~v~~ll 151 (437)
T PRK08655 73 DVIKEVAPHVKEGSLLMDVTSVKERPVEAMEEY-APEGVEILPTHPMFGPRTPSLKGQVVILTPTEKRSNPWFDKVKNFL 151 (437)
T ss_pred HHHHHHHhhCCCCCEEEEcccccHHHHHHHHHh-cCCCCEEEEcCCCCCCCCcccCCCEEEEecCCCCCHHHHHHHHHHH
Confidence 999999999999999999999775554444433 3457889988 8888665566777 555543 567889999999
Q ss_pred HhhCCceeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhcccchhhHhHhHh
Q psy9637 159 QKLNPSFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGGCIIRSVFLGNI 238 (490)
Q Consensus 159 ~~l~~~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~~~v~~i~~~g~~~~s~~l~~i 238 (490)
+.+|..++.+++. +--+++.+.....++.+++.+..+ .+. |++.+...+...+| --.+++.+
T Consensus 152 ~~~G~~v~~~~~e--------~HD~~~a~vs~lph~~a~al~~~l-~~~------g~~~~~~~~~a~~~---frd~~~~~ 213 (437)
T PRK08655 152 EKEGARVIVTSPE--------EHDRIMSVVQGLTHFAYISIASTL-KRL------GVDIKESRKFASPI---YELMIDII 213 (437)
T ss_pred HHcCCEEEECCHH--------HHHHHHHHHHHHHHHHHHHHHHHH-HHc------CCCHHHHHhhcChh---hHHHHHHH
Confidence 9999998887763 234455555666666666655544 445 88877765443322 12233334
Q ss_pred HHhhccCccccccc--CChhHHHHHHHHHHHHHHHHHHHH
Q psy9637 239 KAAFDKNPALSNLL--LDPFFKDAIHATQSSWRAVVSQSA 276 (490)
Q Consensus 239 ~~~~~~~~~~~~~~--~~~~f~~~l~~~~kDl~~~~~~A~ 276 (490)
.+....+|.+-.-+ ..+.....++.+.+.+..+.+..+
T Consensus 214 tRIa~~~p~lw~dI~~~N~~~~~~l~~~~~~l~~l~~~l~ 253 (437)
T PRK08655 214 GRILGQNPYLYASIQMNNPQIPEIHETFIKECEELSELVK 253 (437)
T ss_pred HHHhcCCHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666543322 234333455555555555544443
|
|
| >TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.6e-16 Score=165.88 Aligned_cols=192 Identities=16% Similarity=0.159 Sum_probs=142.6
Q ss_pred CCCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHH-----------HHcccC--------CCCeeccCCHHHHH
Q psy9637 3 AKGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSF-----------LANEAK--------GTNIIGAHSLEELV 63 (490)
Q Consensus 3 ~~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l-----------~~~g~~--------~~~i~~~~s~~e~v 63 (490)
+.++|||||+|.||..||.+|+++||+|++||++++++++. .++|.. ..+++.+++++++.
T Consensus 4 ~~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~l~ 83 (503)
T TIGR02279 4 NVVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHALA 83 (503)
T ss_pred CccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHHhC
Confidence 45689999999999999999999999999999999988753 223311 12456778887653
Q ss_pred hhCCCCcEEEEecCCCchHHHHH-HhhcccCCCCCEEE-cCCCCChHHHHHHHHHH----HHccccccc-cCCCCCcccc
Q psy9637 64 KNLKKPRRVMMLVKAGSAVDDFI-DKLVPLLEKGDIII-DGGNSEYQDTDRRSKAL----EAKGLLYVG-CGVSGGEDGA 136 (490)
Q Consensus 64 ~~l~~~dvIil~vp~~~~v~~vl-~~l~~~l~~g~iiI-d~s~~~~~~~~~~~~~l----~~~gi~~ld-~~vsGg~~~a 136 (490)
+ +|+||.|||.+.+++..+ .++.+.++++.+|. ++|+..+ + ++.+.+ +..|+||++ +|++.
T Consensus 84 -~---aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i--~-~iA~~~~~p~r~~G~HFf~Papv~~----- 151 (503)
T TIGR02279 84 -D---AGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSI--T-AIAAGLARPERVAGLHFFNPAPVMA----- 151 (503)
T ss_pred -C---CCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCH--H-HHHHhcCcccceEEEeccCccccCc-----
Confidence 4 899999999998888776 55666666555544 3333332 2 233333 345999999 78772
Q ss_pred ccCCccCCCC---CcchHHHHHHHHHhhCCceeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q psy9637 137 RYGPSLMPGG---NPAAWPALKPIFQKLNPSFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGW 213 (490)
Q Consensus 137 ~~G~~im~GG---~~~a~~~v~~ll~~l~~~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~ 213 (490)
-..+++| ++++++++.++++.++...+++++.+ | .+.|-+. ...++|++.++++.
T Consensus 152 ---LvEvv~g~~Ts~e~~~~~~~l~~~lgk~pv~v~d~p---G-------fi~Nrl~---~~~~~EA~~l~e~g------ 209 (503)
T TIGR02279 152 ---LVEVVSGLATAAEVAEQLYETALAWGKQPVHCHSTP---G-------FIVNRVA---RPYYAEALRALEEQ------ 209 (503)
T ss_pred ---eEEEeCCCCCCHHHHHHHHHHHHHcCCeeeEeCCCC---C-------cHHHHHH---HHHHHHHHHHHHcC------
Confidence 3567888 88999999999999999998888642 1 1333333 36899999999997
Q ss_pred CCCHHHHHHHHhccc
Q psy9637 214 KLNYGGIALMWRGGC 228 (490)
Q Consensus 214 Gld~~~v~~i~~~g~ 228 (490)
+++++++-++++.+.
T Consensus 210 ~a~~~~ID~al~~~~ 224 (503)
T TIGR02279 210 VAAPAVLDAALRDGA 224 (503)
T ss_pred CCCHHHHHHHHHhcC
Confidence 899999999987643
|
This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families. |
| >PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.6e-15 Score=152.12 Aligned_cols=198 Identities=12% Similarity=0.065 Sum_probs=140.5
Q ss_pred CCCCCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHc-----ccC---------CCCeeccCCHHHHHhhC
Q psy9637 1 MAAKGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLAN-----EAK---------GTNIIGAHSLEELVKNL 66 (490)
Q Consensus 1 M~~~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~-----g~~---------~~~i~~~~s~~e~v~~l 66 (490)
|+.+++|+|||+|.||..||..|+++|++|++||+++++++.+.+. +.. ..++..++++.++++.
T Consensus 1 ~~~~~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~- 79 (311)
T PRK06130 1 MNPIQNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSG- 79 (311)
T ss_pred CCCccEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhcc-
Confidence 7777899999999999999999999999999999999988876542 110 0123456677777666
Q ss_pred CCCcEEEEecCCCch-HHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHH----ccccccccCCCCCccccccCCc
Q psy9637 67 KKPRRVMMLVKAGSA-VDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEA----KGLLYVGCGVSGGEDGARYGPS 141 (490)
Q Consensus 67 ~~~dvIil~vp~~~~-v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~----~gi~~ld~~vsGg~~~a~~G~~ 141 (490)
+|+||+|||+... ...++.++.+.++++.+|+..+++.+ ..+..+.+.. .+++|.+.|..+. ...
T Consensus 80 --aDlVi~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg~~--~~~l~~~~~~~~~~ig~h~~~p~~~~~------l~~ 149 (311)
T PRK06130 80 --ADLVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSGLP--ITAIAQAVTRPERFVGTHFFTPADVIP------LVE 149 (311)
T ss_pred --CCEEEEeccCcHHHHHHHHHHHHHhCCCCcEEEECCCCCC--HHHHHhhcCCcccEEEEccCCCCccCc------eEE
Confidence 8999999999754 45677777777766665543333332 3344444432 2666666653321 113
Q ss_pred cCCCC--CcchHHHHHHHHHhhCCceeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHH
Q psy9637 142 LMPGG--NPAAWPALKPIFQKLNPSFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGG 219 (490)
Q Consensus 142 im~GG--~~~a~~~v~~ll~~l~~~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~~~ 219 (490)
++.|. ++++++.++++|+.++..++++++.. .|. +++|.+. ..++|++.++++. ++++++
T Consensus 150 i~~g~~t~~~~~~~v~~l~~~~G~~~v~~~~d~--~G~------i~nr~~~----~~~~Ea~~l~~~g------~~~~~~ 211 (311)
T PRK06130 150 VVRGDKTSPQTVATTMALLRSIGKRPVLVKKDI--PGF------IANRIQH----ALAREAISLLEKG------VASAED 211 (311)
T ss_pred EeCCCCCCHHHHHHHHHHHHHcCCEEEEEcCCC--CCc------HHHHHHH----HHHHHHHHHHHcC------CCCHHH
Confidence 44443 67899999999999999888876531 121 5666643 6799999999988 899999
Q ss_pred HHHHHhcc
Q psy9637 220 IALMWRGG 227 (490)
Q Consensus 220 v~~i~~~g 227 (490)
+.++++.+
T Consensus 212 id~~~~~~ 219 (311)
T PRK06130 212 IDEVVKWS 219 (311)
T ss_pred HHHHHHhc
Confidence 99998654
|
|
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.9e-15 Score=147.64 Aligned_cols=195 Identities=12% Similarity=0.058 Sum_probs=141.0
Q ss_pred CCCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHH-----------HHHcccC--------CCCeeccCCHHHHH
Q psy9637 3 AKGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDS-----------FLANEAK--------GTNIIGAHSLEELV 63 (490)
Q Consensus 3 ~~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~-----------l~~~g~~--------~~~i~~~~s~~e~v 63 (490)
.+.+|||||+|.||..||.+|+.+||+|++||++++..+. +.+.+.. -.+++.++++++ +
T Consensus 4 ~~~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~-~ 82 (286)
T PRK07819 4 AIQRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDLGD-F 82 (286)
T ss_pred CccEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCHHH-h
Confidence 3458999999999999999999999999999999998876 3333321 124556777744 4
Q ss_pred hhCCCCcEEEEecCCCchHHHHH-HhhcccC-CCCCEEEcCCCCChHHHHHHHHHHHHc--cccccc-cCCCCCcccccc
Q psy9637 64 KNLKKPRRVMMLVKAGSAVDDFI-DKLVPLL-EKGDIIIDGGNSEYQDTDRRSKALEAK--GLLYVG-CGVSGGEDGARY 138 (490)
Q Consensus 64 ~~l~~~dvIil~vp~~~~v~~vl-~~l~~~l-~~g~iiId~s~~~~~~~~~~~~~l~~~--gi~~ld-~~vsGg~~~a~~ 138 (490)
+. +|+||.|+|.+..++..+ ..+...+ +++.+++..+++.+...........++ |+||++ +++++..+-
T Consensus 83 ~~---~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~~la~~~~~~~r~~g~hf~~P~~~~~lvEl--- 156 (286)
T PRK07819 83 AD---RQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMKLAAATKRPGRVLGLHFFNPVPVLPLVEL--- 156 (286)
T ss_pred CC---CCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCccEEEEecCCCcccCceEEE---
Confidence 44 999999999999988776 4555555 789999999888877666655444455 899998 667766521
Q ss_pred CCccCCCCCcchHHHHHHHHH-hhCCceeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CC
Q psy9637 139 GPSLMPGGNPAAWPALKPIFQ-KLNPSFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWK-LN 216 (490)
Q Consensus 139 G~~im~GG~~~a~~~v~~ll~-~l~~~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~G-ld 216 (490)
....++++++++++.+++. .++...+.+++.. | .... ......++|++.+.+. | .+
T Consensus 157 --v~~~~T~~~~~~~~~~~~~~~lgk~pv~v~d~p---G---fi~n-------Ri~~~~~~Ea~~ll~e-------Gv~~ 214 (286)
T PRK07819 157 --VPTLVTSEATVARAEEFASDVLGKQVVRAQDRS---G---FVVN-------ALLVPYLLSAIRMVES-------GFAT 214 (286)
T ss_pred --eCCCCCCHHHHHHHHHHHHHhCCCCceEecCCC---C---hHHH-------HHHHHHHHHHHHHHHh-------CCCC
Confidence 4556789999999999988 5999888777632 1 1111 2244556677777665 4 45
Q ss_pred HHHHHHHHhc
Q psy9637 217 YGGIALMWRG 226 (490)
Q Consensus 217 ~~~v~~i~~~ 226 (490)
++++=.+++.
T Consensus 215 ~~dID~~~~~ 224 (286)
T PRK07819 215 AEDIDKAMVL 224 (286)
T ss_pred HHHHHHHHHh
Confidence 6666666543
|
|
| >PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.65 E-value=6.9e-15 Score=147.70 Aligned_cols=193 Identities=18% Similarity=0.227 Sum_probs=133.0
Q ss_pred CCCCCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHc-----------ccC--------CCCeeccCCHHH
Q psy9637 1 MAAKGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLAN-----------EAK--------GTNIIGAHSLEE 61 (490)
Q Consensus 1 M~~~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~-----------g~~--------~~~i~~~~s~~e 61 (490)
|.+.++|+|||+|.||..||.+|+++|++|++||+++++++.+.+. +.. ..+++.++++++
T Consensus 1 ~~~~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 80 (292)
T PRK07530 1 MMAIKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLED 80 (292)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHHH
Confidence 4345789999999999999999999999999999999988764421 110 023455677754
Q ss_pred HHhhCCCCcEEEEecCCCchHH-HHHHhhcccCCCCCEEE-cCCCCChHHHHHHHHHHHH----ccccccc-cCCCCCcc
Q psy9637 62 LVKNLKKPRRVMMLVKAGSAVD-DFIDKLVPLLEKGDIII-DGGNSEYQDTDRRSKALEA----KGLLYVG-CGVSGGED 134 (490)
Q Consensus 62 ~v~~l~~~dvIil~vp~~~~v~-~vl~~l~~~l~~g~iiI-d~s~~~~~~~~~~~~~l~~----~gi~~ld-~~vsGg~~ 134 (490)
++. +|+||.|||...+++ .++.++.+.++++.+|+ ++|+..+ + ++.+.+.. .|+||++ +|++++.+
T Consensus 81 -~~~---aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~--s-~la~~~~~~~r~~g~h~~~p~~~~~~ve 153 (292)
T PRK07530 81 -LAD---CDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISI--T-RLASATDRPERFIGIHFMNPVPVMKLVE 153 (292)
T ss_pred -hcC---CCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCH--H-HHHhhcCCcccEEEeeccCCcccCceEE
Confidence 444 899999999976655 55678888899999887 5554432 2 34444321 3889998 56554432
Q ss_pred ccccCCccCCCCCcchHHHHHHHHHhhCCceeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q psy9637 135 GARYGPSLMPGGNPAAWPALKPIFQKLNPSFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWK 214 (490)
Q Consensus 135 ~a~~G~~im~GG~~~a~~~v~~ll~~l~~~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~G 214 (490)
- ....+++++.++++.++|+.++..++++++.+ -+++++++ ...+.|++.+.++ |
T Consensus 154 i-----~~g~~t~~~~~~~~~~~~~~~gk~~v~~~d~p---------g~i~nRl~----~~~~~ea~~~~~~-------g 208 (292)
T PRK07530 154 L-----IRGIATDEATFEAAKEFVTKLGKTITVAEDFP---------AFIVNRIL----LPMINEAIYTLYE-------G 208 (292)
T ss_pred E-----eCCCCCCHHHHHHHHHHHHHcCCeEEEecCcC---------ChHHHHHH----HHHHHHHHHHHHh-------C
Confidence 1 22256899999999999999999888877653 24445443 3345666666655 4
Q ss_pred C-CHHHHHHHHh
Q psy9637 215 L-NYGGIALMWR 225 (490)
Q Consensus 215 l-d~~~v~~i~~ 225 (490)
+ +++++-.+++
T Consensus 209 ~~~~~~iD~~~~ 220 (292)
T PRK07530 209 VGSVEAIDTAMK 220 (292)
T ss_pred CCCHHHHHHHHH
Confidence 4 5555555554
|
|
| >COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.3e-15 Score=147.98 Aligned_cols=273 Identities=17% Similarity=0.112 Sum_probs=187.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccC---------CCCeeccCCHHHHHhhCCCCcEEEE
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAK---------GTNIIGAHSLEELVKNLKKPRRVMM 74 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~---------~~~i~~~~s~~e~v~~l~~~dvIil 74 (490)
+++|+|||.|.+|++||..|+++||+|.+|.|+++..+++.....+ +.++.++++++++++. +|+|++
T Consensus 1 ~~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~---ad~iv~ 77 (329)
T COG0240 1 MMKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDG---ADIIVI 77 (329)
T ss_pred CceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhc---CCEEEE
Confidence 3689999999999999999999999999999999999988764221 3456678899999887 899999
Q ss_pred ecCCCchHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHH-HHHHHc-cccccccCCCCCccccc----cCC-ccCCCC-
Q psy9637 75 LVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRS-KALEAK-GLLYVGCGVSGGEDGAR----YGP-SLMPGG- 146 (490)
Q Consensus 75 ~vp~~~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~-~~l~~~-gi~~ld~~vsGg~~~a~----~G~-~im~GG- 146 (490)
.||. +.++++++++.+.+.++.++|.++.+.-..+.++. +.+++. +.+. ..+..||.-|. .-+ .+.+++
T Consensus 78 avPs-~~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e~l~~~~--~~vLSGPs~A~EVa~g~pta~~vas~ 154 (329)
T COG0240 78 AVPS-QALREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEEELPDNP--IAVLSGPSFAKEVAQGLPTAVVVASN 154 (329)
T ss_pred ECCh-HHHHHHHHHHhhhccCCCeEEEEeccccCCCcchHHHHHHHHcCCCe--EEEEECccHHHHHhcCCCcEEEEecC
Confidence 9999 69999999998899999999999998877676666 444332 3333 45555555543 333 444444
Q ss_pred CcchHHHHHHHHHhhCCceeeCCC-CCCC------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q psy9637 147 NPAAWPALKPIFQKLNPSFETSAP-TPKP------------QRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGW 213 (490)
Q Consensus 147 ~~~a~~~v~~ll~~l~~~~~~~g~-~g~~------------~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~ 213 (490)
|++..++++.+|..=.-+++...+ .|.. .| -..-+.+=.|+-.+....+++|+-.++...
T Consensus 155 d~~~a~~v~~~f~~~~Frvy~~~Dv~GveigGAlKNViAIA~G-i~dGlg~G~NakaalitrGL~Em~rlg~~l------ 227 (329)
T COG0240 155 DQEAAEKVQALFSSPYFRVYTSTDVIGVEIGGALKNVIAIAAG-IADGLGLGDNAKAALITRGLAEMTRLGVAL------ 227 (329)
T ss_pred CHHHHHHHHHHhCCCcEEEEecCchhhhHHHHHHHHHHHHHHH-HHHHhhcChhHHHHHHHhHHHHHHHHHHHh------
Confidence 667777788877752112221111 1100 00 011223345777788888899999999998
Q ss_pred CCCHHHHHHHHhcccchhhHhHhHhHHhhccCcccccccCCh---h-HH---HHHHHHHHHHHHHHHHHHHcCCCchHHH
Q psy9637 214 KLNYGGIALMWRGGCIIRSVFLGNIKAAFDKNPALSNLLLDP---F-FK---DAIHATQSSWRAVVSQSALLGIPTPAFA 286 (490)
Q Consensus 214 Gld~~~v~~i~~~g~~~~s~~l~~i~~~~~~~~~~~~~~~~~---~-f~---~~l~~~~kDl~~~~~~A~~~gv~~P~~~ 286 (490)
|-+++++...-.-| +++-.+.+...+|.++...+-.. . .. ..+-...+..+.+.+.++++++.+|+++
T Consensus 228 G~~~~T~~gLsGlG-----DLilTCts~~SRN~r~G~~lg~g~~~~e~l~~~g~vvEGv~t~k~v~~la~~~~i~mPI~~ 302 (329)
T COG0240 228 GAKPETFMGLSGLG-----DLILTCTSPLSRNRRFGLLLGQGLSLDEALEEIGQVVEGVRTAKAVYELAKKLGIEMPITE 302 (329)
T ss_pred CCCcchhccccccc-----ceeEecCCCccccHHHHHHHhCCCCHHHHHHhcCCeeecHHHHHHHHHHHHHcCCCCCHHH
Confidence 88877665553322 33444444455555544322111 1 00 1344557888999999999999999999
Q ss_pred HHHHHHHH
Q psy9637 287 TALAFYDG 294 (490)
Q Consensus 287 aa~~~~~~ 294 (490)
++++++..
T Consensus 303 ~Vy~vl~~ 310 (329)
T COG0240 303 AVYRVLYE 310 (329)
T ss_pred HHHHHHhC
Confidence 99998763
|
|
| >PLN02545 3-hydroxybutyryl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=99.64 E-value=9.6e-15 Score=146.88 Aligned_cols=195 Identities=11% Similarity=0.139 Sum_probs=133.6
Q ss_pred CCCCCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHH-----------HHHcccC--------CCCeeccCCHHH
Q psy9637 1 MAAKGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDS-----------FLANEAK--------GTNIIGAHSLEE 61 (490)
Q Consensus 1 M~~~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~-----------l~~~g~~--------~~~i~~~~s~~e 61 (490)
|..+++|+|||+|.||.+||.+|+++|++|++||+++++++. +.+.+.. ...+...++. +
T Consensus 1 ~~~~~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~ 79 (295)
T PLN02545 1 MAEIKKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNL-E 79 (295)
T ss_pred CCCcCEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCH-H
Confidence 656678999999999999999999999999999999988764 2222210 0123334444 4
Q ss_pred HHhhCCCCcEEEEecCCCchHHHH-HHhhcccCCCCCEEE-cCCCCChHHHHHHHHH-HHHccccccccCCCCCcccccc
Q psy9637 62 LVKNLKKPRRVMMLVKAGSAVDDF-IDKLVPLLEKGDIII-DGGNSEYQDTDRRSKA-LEAKGLLYVGCGVSGGEDGARY 138 (490)
Q Consensus 62 ~v~~l~~~dvIil~vp~~~~v~~v-l~~l~~~l~~g~iiI-d~s~~~~~~~~~~~~~-l~~~gi~~ld~~vsGg~~~a~~ 138 (490)
.++. +|+||.|||.+.+++.. +.++.+.++++.+|+ ++|+..+.+..+.... .+..|+||++.|..+..
T Consensus 80 ~~~~---aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~~~~l~~~~~~~~r~~g~h~~~pp~~~~l----- 151 (295)
T PLN02545 80 ELRD---ADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSISITRLASATQRPQQVIGMHFMNPPPIMKL----- 151 (295)
T ss_pred HhCC---CCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCcceEEEeccCCcccCce-----
Confidence 4554 99999999988777765 467888888888886 6777654443333221 12248899999976422
Q ss_pred CCccCC---CCCcchHHHHHHHHHhhCCceeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q psy9637 139 GPSLMP---GGNPAAWPALKPIFQKLNPSFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKL 215 (490)
Q Consensus 139 G~~im~---GG~~~a~~~v~~ll~~l~~~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gl 215 (490)
..++ +++++++++++++|+.++..++++++.. | .++++.+ ...++|++.+.+.- -.
T Consensus 152 --veiv~g~~t~~e~~~~~~~ll~~lG~~~~~~~d~~---g------~i~nri~----~~~~~ea~~~~~~g------v~ 210 (295)
T PLN02545 152 --VEIIRGADTSDEVFDATKALAERFGKTVVCSQDYP---G------FIVNRIL----MPMINEAFYALYTG------VA 210 (295)
T ss_pred --EEEeCCCCCCHHHHHHHHHHHHHcCCeeEEecCcc---c------HHHHHHH----HHHHHHHHHHHHcC------CC
Confidence 2233 3588999999999999999988877642 1 1333333 33477887777663 35
Q ss_pred CHHHHHHHHh
Q psy9637 216 NYGGIALMWR 225 (490)
Q Consensus 216 d~~~v~~i~~ 225 (490)
+++++-.++.
T Consensus 211 ~~~~iD~~~~ 220 (295)
T PLN02545 211 SKEDIDTGMK 220 (295)
T ss_pred CHHHHHHHHH
Confidence 5666666554
|
|
| >COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.2e-14 Score=136.44 Aligned_cols=218 Identities=24% Similarity=0.378 Sum_probs=158.3
Q ss_pred HHHHHhhCCCCcEEEEecCCCchHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCCCcccccc
Q psy9637 59 LEELVKNLKKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGGEDGARY 138 (490)
Q Consensus 59 ~~e~v~~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg~~~a~~ 138 (490)
++++...|+.-|+||=--.+ ..++.++.-...-.+|--++|++||--..- .+.|. |-+.||+..+..
T Consensus 77 i~~la~~L~~GDivIDGGNS--~y~Ds~rr~~~l~~kgi~flD~GTSGG~~G-------~~~G~----~lMiGG~~~a~~ 143 (300)
T COG1023 77 IDDLAPLLSAGDIVIDGGNS--NYKDSLRRAKLLAEKGIHFLDVGTSGGVWG-------AERGY----CLMIGGDEEAVE 143 (300)
T ss_pred HHHHHhhcCCCCEEEECCcc--chHHHHHHHHHHHhcCCeEEeccCCCCchh-------hhcCc----eEEecCcHHHHH
Confidence 44555567778888854332 455666554444568889999999864322 23454 446677766543
Q ss_pred CC-ccCCCCCcchHHHHHHHHHhhCCceeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCH
Q psy9637 139 GP-SLMPGGNPAAWPALKPIFQKLNPSFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNY 217 (490)
Q Consensus 139 G~-~im~GG~~~a~~~v~~ll~~l~~~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~ 217 (490)
.. .+ |+.+.+ =-.-+.|+||.| .++++|++||-+..+++++++|+|.+.+.. .|.+|.
T Consensus 144 ~~~pi--------f~~lA~----ge~Gyl~~Gp~G-----sGHfvKMVHNGIEYGmM~a~aEGfelL~~s----~fD~D~ 202 (300)
T COG1023 144 RLEPI--------FKALAP----GEDGYLYCGPSG-----SGHFVKMVHNGIEYGMMQAIAEGFELLKNS----PFDYDL 202 (300)
T ss_pred HHHHH--------HHhhCc----CcCccccccCCC-----cchhHHHHhccHHHHHHHHHHHHHHHHHhC----CCCCCH
Confidence 22 21 111111 134578889987 458999999999999999999999999887 689999
Q ss_pred HHHHHHHhcccchhhHhHhHhHHhhccCccccccc---CChhHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHH-HHH
Q psy9637 218 GGIALMWRGGCIIRSVFLGNIKAAFDKNPALSNLL---LDPFFKDAIHATQSSWRAVVSQSALLGIPTPAFATALA-FYD 293 (490)
Q Consensus 218 ~~v~~i~~~g~~~~s~~l~~i~~~~~~~~~~~~~~---~~~~f~~~l~~~~kDl~~~~~~A~~~gv~~P~~~aa~~-~~~ 293 (490)
++++++|+.|+.||||+++....+|.+.+++.+.. -+.+ .-++.++.|.++|+|+|+++.++. .|.
T Consensus 203 ~~VA~vW~hGSVIrSWLldLt~~Af~~d~~L~q~~g~v~dSG----------EGrWTv~~aldlgvpaPVia~al~~Rf~ 272 (300)
T COG1023 203 EAVAEVWNHGSVIRSWLLDLTAEAFKKDPDLDQISGRVSDSG----------EGRWTVEEALDLGVPAPVIALALMMRFR 272 (300)
T ss_pred HHHHHHHhCcchHHHHHHHHHHHHHhhCCCHHHhcCeeccCC----------CceeehHHHHhcCCCchHHHHHHHHHHh
Confidence 99999999999999999999999999888755421 1111 125678899999999999988875 444
Q ss_pred HHHhCCChhhhHHHHHHhhcccccccc
Q psy9637 294 GYRSKRLPANLLQAQRDYFGAHTYELL 320 (490)
Q Consensus 294 ~~~~~g~~~~~~~a~rd~fgah~~~r~ 320 (490)
+....-+...+++++|.-||.|..+++
T Consensus 273 S~~~d~f~~kvlaalR~~FGgH~vk~k 299 (300)
T COG1023 273 SRQDDTFAGKVLAALRNEFGGHAVKKK 299 (300)
T ss_pred ccchhhHHHHHHHHHHHHhCCcccccC
Confidence 444455667899999999999987764
|
|
| >PRK11880 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.5e-13 Score=136.19 Aligned_cols=251 Identities=12% Similarity=0.130 Sum_probs=151.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCC---CeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCc
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHG---FTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGS 80 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G---~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~ 80 (490)
||+|+|||+|.||..++..|.++| ++|.+|||++++.+.+.+... +....+..+++.. +|+||+|+|+.
T Consensus 2 mm~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~g----~~~~~~~~~~~~~---advVil~v~~~- 73 (267)
T PRK11880 2 MKKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEYG----VRAATDNQEAAQE---ADVVVLAVKPQ- 73 (267)
T ss_pred CCEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhcC----CeecCChHHHHhc---CCEEEEEcCHH-
Confidence 578999999999999999999999 789999999999888776421 2346777777765 89999999984
Q ss_pred hHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCCCccccccCC-ccCCCC--CcchHHHHHHH
Q psy9637 81 AVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGGEDGARYGP-SLMPGG--NPAAWPALKPI 157 (490)
Q Consensus 81 ~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg~~~a~~G~-~im~GG--~~~a~~~v~~l 157 (490)
.++++++.+.+.+ +++||...++.+....+ + ....+.+++.+ +...+.....+. .+.++. ++++++.++.+
T Consensus 74 ~~~~v~~~l~~~~--~~~vvs~~~gi~~~~l~--~-~~~~~~~iv~~-~P~~p~~~~~~~~~i~~~~~~~~~~~~~v~~l 147 (267)
T PRK11880 74 VMEEVLSELKGQL--DKLVVSIAAGVTLARLE--R-LLGADLPVVRA-MPNTPALVGAGMTALTANALVSAEDRELVENL 147 (267)
T ss_pred HHHHHHHHHHhhc--CCEEEEecCCCCHHHHH--H-hcCCCCcEEEe-cCCchHHHcCceEEEecCCCCCHHHHHHHHHH
Confidence 8999999988877 57888888876543222 2 22233344332 112222233444 345553 77899999999
Q ss_pred HHhhCCceeeCCCCCCCCCCHHHHHHHHHHHHHH---HHHHHHHHHHHHHH-HHHHHhCCCCCHHHHHHHHhcccchhhH
Q psy9637 158 FQKLNPSFETSAPTPKPQRDKKEFLENIRQALYA---SKIVSYAQGFMLMR-QAAEIHGWKLNYGGIALMWRGGCIIRSV 233 (490)
Q Consensus 158 l~~l~~~~~~~g~~g~~~g~~a~~~Kll~n~l~~---~~~~~~aE~~~la~-~a~~~~~~Gld~~~v~~i~~~g~~~~s~ 233 (490)
|+.+|..+....+. ....+. ++.. +.+..+.|++..+. +. |++.++..+++...-.+...
T Consensus 148 ~~~lG~~~~~~~e~---------~~d~~~-a~~~~~pa~~~~~~~~~~~~~~~~------Gl~~~~a~~~~~~~~~g~~~ 211 (267)
T PRK11880 148 LSAFGKVVWVDDEK---------QMDAVT-AVSGSGPAYVFLFIEALADAGVKL------GLPREQARKLAAQTVLGAAK 211 (267)
T ss_pred HHhCCeEEEECChH---------hcchHH-HHhcChHHHHHHHHHHHHHHHHHc------CCCHHHHHHHHHHHHHHHHH
Confidence 99999755432121 111110 0111 23334455554433 34 99999888876533222222
Q ss_pred hHhHhHHhhccCcc-cccccCChhHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHh
Q psy9637 234 FLGNIKAAFDKNPA-LSNLLLDPFFKDAIHATQSSWRAVVSQSALLGIPTPAFATALAFYDGYRS 297 (490)
Q Consensus 234 ~l~~i~~~~~~~~~-~~~~~~~~~f~~~l~~~~kDl~~~~~~A~~~gv~~P~~~aa~~~~~~~~~ 297 (490)
++.. .+..+. +.+..-.| ---....++..++.|++-.+.++..+.++++++
T Consensus 212 ~~~~----~~~~~~~l~~~v~tp---------gG~t~~gl~~l~~~g~~~~~~~a~~~~~~ra~~ 263 (267)
T PRK11880 212 LLLE----SGEHPAELRDNVTSP---------GGTTIAALRVLEEKGLRAAVIEAVQAAAKRSKE 263 (267)
T ss_pred HHHh----cCCCHHHHHHhCCCC---------cHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Confidence 2221 000110 10111111 122344555666667777777777776666654
|
|
| >PRK07680 late competence protein ComER; Validated | Back alignment and domain information |
|---|
Probab=99.59 E-value=1e-13 Score=137.90 Aligned_cols=149 Identities=19% Similarity=0.247 Sum_probs=111.6
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC----eEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCc
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGF----TVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGS 80 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~----~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~ 80 (490)
|+|+|||+|.||..|+..|.++|+ +|.+|||++++.+.+.+... .+..+.++.+++.. +|+||+|+|+ .
T Consensus 1 m~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~---g~~~~~~~~~~~~~---aDiVilav~p-~ 73 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYP---GIHVAKTIEEVISQ---SDLIFICVKP-L 73 (273)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcC---CeEEECCHHHHHHh---CCEEEEecCH-H
Confidence 479999999999999999999994 79999999998888765321 13456788888776 8999999987 5
Q ss_pred hHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCCCccccccCC-ccCCC--CCcchHHHHHHH
Q psy9637 81 AVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGGEDGARYGP-SLMPG--GNPAAWPALKPI 157 (490)
Q Consensus 81 ~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg~~~a~~G~-~im~G--G~~~a~~~v~~l 157 (490)
.+.++++++.+.+.++++||++++... ...+.+.+..+.++++.. .+..+..|. .++.| .+++..+.++++
T Consensus 74 ~~~~vl~~l~~~l~~~~~iis~~ag~~--~~~L~~~~~~~~~r~~p~----~~~~~~~G~t~~~~g~~~~~~~~~~~~~l 147 (273)
T PRK07680 74 DIYPLLQKLAPHLTDEHCLVSITSPIS--VEQLETLVPCQVARIIPS----ITNRALSGASLFTFGSRCSEEDQQKLERL 147 (273)
T ss_pred HHHHHHHHHHhhcCCCCEEEEECCCCC--HHHHHHHcCCCEEEECCC----hHHHHhhccEEEeeCCCCCHHHHHHHHHH
Confidence 789999999999988999999998653 333333333334555542 223455677 44555 355778999999
Q ss_pred HHhhCCcee
Q psy9637 158 FQKLNPSFE 166 (490)
Q Consensus 158 l~~l~~~~~ 166 (490)
|+.+|..+.
T Consensus 148 l~~~G~~~~ 156 (273)
T PRK07680 148 FSNISTPLV 156 (273)
T ss_pred HHcCCCEEE
Confidence 999996443
|
|
| >TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.3e-12 Score=129.39 Aligned_cols=152 Identities=11% Similarity=0.095 Sum_probs=116.0
Q ss_pred CcEEEEcccHH--------------------HHHHHHHHHHCCCeEEEEeCChHHHH-----HHHHcccCCCCeeccCCH
Q psy9637 5 GDIGLIGLAVM--------------------GQNLILNMNDHGFTVVAYNRTTAKVD-----SFLANEAKGTNIIGAHSL 59 (490)
Q Consensus 5 ~~IgiIGlG~M--------------------G~~lA~~L~~~G~~V~v~dr~~~~~~-----~l~~~g~~~~~i~~~~s~ 59 (490)
|||.|.|.|+- |.+||+||+++||+|++|||++++++ .+.+.|.. .++++
T Consensus 1 ~~~~~~g~gnq~ly~~~~~~~~~~gg~~p~gGspMArnLlkAGheV~V~Drnrsa~e~e~~e~LaeaGA~-----~AaS~ 75 (341)
T TIGR01724 1 MKVSVYGAGNQKLYTDELNLPEKFGGEPPYGGSRMAIEFAMAGHDVVLAEPNREFMSDDLWKKVEDAGVK-----VVSDD 75 (341)
T ss_pred CeeEEecCcchhHHHHHhCChhhcCCCCCCCHHHHHHHHHHCCCEEEEEeCChhhhhhhhhHHHHHCCCe-----ecCCH
Confidence 47888888864 78999999999999999999977653 46666553 68899
Q ss_pred HHHHhhCCCCcEEEEecCCCchHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHH---HHHc--ccc-ccccCCCCCc
Q psy9637 60 EELVKNLKKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKA---LEAK--GLL-YVGCGVSGGE 133 (490)
Q Consensus 60 ~e~v~~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~---l~~~--gi~-~ld~~vsGg~ 133 (490)
.++++. +|+||+|+|++.++++|++++++.+.+|.+|||+||+.|....+..+. +.++ |+. |..+.|-|.+
T Consensus 76 aEAAa~---ADVVIL~LPd~aaV~eVl~GLaa~L~~GaIVID~STIsP~t~~~~~e~~l~~~r~d~~v~s~HP~~vP~~~ 152 (341)
T TIGR01724 76 KEAAKH---GEIHVLFTPFGKGTFSIARTIIEHVPENAVICNTCTVSPVVLYYSLEKILRLKRTDVGISSMHPAAVPGTP 152 (341)
T ss_pred HHHHhC---CCEEEEecCCHHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHHHhhcCccccCeeccCCCCCCCCC
Confidence 999988 899999999999999999999999999999999999999988888755 2333 332 3334443333
Q ss_pred cccccCCccCCC--------CCcchHHHHHHHHHhhCCceee
Q psy9637 134 DGARYGPSLMPG--------GNPAAWPALKPIFQKLNPSFET 167 (490)
Q Consensus 134 ~~a~~G~~im~G--------G~~~a~~~v~~ll~~l~~~~~~ 167 (490)
.. +.-+..| .++|.++++-++.++.+...+.
T Consensus 153 ~~---~~~~~~~~~~~~~~~A~ee~i~~~~el~~~~~~~~~~ 191 (341)
T TIGR01724 153 QH---GHYVIGGKPTAGKEMATEEQISKCVELAKSTGKKAYV 191 (341)
T ss_pred CC---ceeeeccccccccccCCHHHHHHHHHHHHHhCCCeee
Confidence 22 1111111 3578889999999999887665
|
This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown. |
| >PRK12921 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1e-13 Score=139.78 Aligned_cols=259 Identities=16% Similarity=0.154 Sum_probs=157.2
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccC----CCC----eeccCCHHHHHhhCCCCcEEEEec
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAK----GTN----IIGAHSLEELVKNLKKPRRVMMLV 76 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~----~~~----i~~~~s~~e~v~~l~~~dvIil~v 76 (490)
|||+|||+|.||..+|..|+++||+|++|+| +++.+.+.+.+.. ... ....+++++... .+|+||+++
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~d~vilav 76 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTG---PFDLVILAV 76 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccC---CCCEEEEEe
Confidence 5899999999999999999999999999999 7888877765432 000 112344554433 489999999
Q ss_pred CCCchHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHc----cccccccCCCCCccccccCC-ccCCCC----C
Q psy9637 77 KAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAK----GLLYVGCGVSGGEDGARYGP-SLMPGG----N 147 (490)
Q Consensus 77 p~~~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~----gi~~ld~~vsGg~~~a~~G~-~im~GG----~ 147 (490)
|+. +++++++.+.+.+.++.+||...|... ......+.+.+. |+.++.+...++..-...+. .+.+|. .
T Consensus 77 k~~-~~~~~~~~l~~~~~~~~~ii~~~nG~~-~~~~l~~~~~~~~v~~g~~~~~~~~~~~g~v~~~~~~~~~iG~~~~~~ 154 (305)
T PRK12921 77 KAY-QLDAAIPDLKPLVGEDTVIIPLQNGIG-QLEQLEPYFGRERVLGGVVFISAQLNGDGVVVQRADHRLTFGEIPGQR 154 (305)
T ss_pred ccc-CHHHHHHHHHhhcCCCCEEEEeeCCCC-hHHHHHHhCCcccEEEEEEEEEEEECCCeEEEEcCCCcEEEcCCCCCc
Confidence 995 889999999998888889998888753 222222333221 44555555443222222233 444443 2
Q ss_pred cchHHHHHHHHHhhCCceeeCCCCCCCCCCHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHH
Q psy9637 148 PAAWPALKPIFQKLNPSFETSAPTPKPQRDKKEFLENIRQALYAS---------------------KIVSYAQGFMLMRQ 206 (490)
Q Consensus 148 ~~a~~~v~~ll~~l~~~~~~~g~~g~~~g~~a~~~Kll~n~l~~~---------------------~~~~~aE~~~la~~ 206 (490)
.+..+.+..+|...+..+...... ....+.|++.|+.... ....+.|...++++
T Consensus 155 ~~~~~~l~~~l~~~g~~~~~~~di-----~~~~w~Kl~~N~~~n~l~a~~~~~~g~~~~~~~~~~l~~~~~~E~~~v~~a 229 (305)
T PRK12921 155 SERTRAVRDALAGARLEVVLSENI-----RQDIWRKLLFNAVMNGMTALGRATVGGILSRPGGRDLARALLRECLAVARA 229 (305)
T ss_pred CHHHHHHHHHHHhCCCCceecHHH-----HHHHHHHHHHHHhHHHHHHHhCCCHHHHHhCccHHHHHHHHHHHHHHHHHH
Confidence 345566777777666544332222 2467889888865433 23445666666666
Q ss_pred HHHHhCCCCCHHHHHHHHhc----ccchhhHhHhHhHHhhccCcccccccCChhHHHHHHHHHHHHHHHHHHHHHcCCCc
Q psy9637 207 AAEIHGWKLNYGGIALMWRG----GCIIRSVFLGNIKAAFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSALLGIPT 282 (490)
Q Consensus 207 a~~~~~~Gld~~~v~~i~~~----g~~~~s~~l~~i~~~~~~~~~~~~~~~~~~f~~~l~~~~kDl~~~~~~A~~~gv~~ 282 (490)
. |+.++.+.+.+.+.. ..-..|.+++++.. +-..+++.. ...++++|+++|+++
T Consensus 230 ~----G~~~~~~~~~~~~~~~~~~~~~~~sSm~~D~~~---------------gr~tEid~i---~G~vv~~a~~~gv~~ 287 (305)
T PRK12921 230 E----GAPLRDDVVEEIVKIFAGAPGDMKTSMLRDMEK---------------GRPLEIDHL---QGVLLRRARAHGIPT 287 (305)
T ss_pred c----CCCCChhHHHHHHHHHhccCCCCCcHHHHHHHc---------------CCcccHHHH---HHHHHHHHHHhCCCC
Confidence 5 444444444333221 00011112222110 000112211 346999999999999
Q ss_pred hHHHHHHHHHHHHH
Q psy9637 283 PAFATALAFYDGYR 296 (490)
Q Consensus 283 P~~~aa~~~~~~~~ 296 (490)
|..+..+++++...
T Consensus 288 P~~~~l~~~~~~~~ 301 (305)
T PRK12921 288 PILDTVYALLKAYE 301 (305)
T ss_pred cHHHHHHHHHHHHh
Confidence 99999999987654
|
|
| >PRK06476 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.5e-13 Score=134.01 Aligned_cols=186 Identities=12% Similarity=0.135 Sum_probs=129.4
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCe---EEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCch
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFT---VVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSA 81 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~---V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~ 81 (490)
|+|||||+|.||..|++.|.++|+. +.+|||++++.+.+.+... .+..+.++.+++++ +|+||+|+|+ ..
T Consensus 1 m~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~---~~~~~~~~~~~~~~---aDvVilav~p-~~ 73 (258)
T PRK06476 1 MKIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFP---KVRIAKDNQAVVDR---SDVVFLAVRP-QI 73 (258)
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcC---CceEeCCHHHHHHh---CCEEEEEeCH-HH
Confidence 4799999999999999999999865 5799999999888876531 12356788888877 8999999996 68
Q ss_pred HHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCCCccccccCCccCCCCCcchHHHHHHHHHhh
Q psy9637 82 VDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGGEDGARYGPSLMPGGNPAAWPALKPIFQKL 161 (490)
Q Consensus 82 v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg~~~a~~G~~im~GG~~~a~~~v~~ll~~l 161 (490)
+.+++.++. +.++++||+...+. ....+.+.+......+..+|.... ....|.+.+.+++ +.++++|+.+
T Consensus 74 ~~~vl~~l~--~~~~~~vis~~ag~--~~~~l~~~~~~~~~~~r~~P~~~~--a~~~g~t~~~~~~----~~~~~l~~~l 143 (258)
T PRK06476 74 AEEVLRALR--FRPGQTVISVIAAT--DRAALLEWIGHDVKLVRAIPLPFV--AERKGVTAIYPPD----PFVAALFDAL 143 (258)
T ss_pred HHHHHHHhc--cCCCCEEEEECCCC--CHHHHHHHhCCCCCEEEECCCChh--hhCCCCeEecCCH----HHHHHHHHhc
Confidence 889988762 56789999876544 233333333333345667776221 1233555555553 5899999999
Q ss_pred CCceeeCCCCCCCCCCHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHh
Q psy9637 162 NPSFETSAPTPKPQRDKKEFLENIRQA-----LYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWR 225 (490)
Q Consensus 162 ~~~~~~~g~~g~~~g~~a~~~Kll~n~-----l~~~~~~~~aE~~~la~~a~~~~~~Gld~~~v~~i~~ 225 (490)
|..++...+. ...++ +.+..+..+.++..++++. |+|.++..+++.
T Consensus 144 G~~~~~~~e~------------~~d~~~a~~s~~a~~~~~~~~~~~~~~~~------Gl~~~~a~~~~~ 194 (258)
T PRK06476 144 GTAVECDSEE------------EYDLLAAASALMATYFGILETATGWLEEQ------GLKRQKARAYLA 194 (258)
T ss_pred CCcEEECChH------------hccceeehhccHHHHHHHHHHHHHHHHHc------CCCHHHHHHHHH
Confidence 9877632221 11111 3344445666777788888 999998888875
|
|
| >PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.58 E-value=5.6e-15 Score=149.01 Aligned_cols=116 Identities=41% Similarity=0.743 Sum_probs=100.2
Q ss_pred ceeecCCCCcchhHHhhhhHHHHHHHHHHHHHHHHHh-hcCCChHHHHHHHHHhccCc-chhHHHHHHHHHhcccCCCCC
Q psy9637 349 CDWVGEQGAGHFVKMVHNGIEYGDMQLICEAYHLMTG-ALGMSHDEMSAVFEDWNKGE-LDSFLIEITKDILKFKDTDGA 426 (490)
Q Consensus 349 ~~~~g~~g~gh~vkmvhngiey~~m~~~~E~~~~~~~-~~~~~~~~~~~~~~~w~~g~-~~s~l~~~~~~~~~~~~~~~~ 426 (490)
+.|+|+.|+||++|++||.|++++|++++|++.+++. ..|+ |+.++++.|+.|+ ++||+++...+++.+ |
T Consensus 160 ~~~~G~~G~g~~~Kl~~n~l~~~~~~~~aEa~~l~~~~~~gl---d~~~~~~~~~~~~~~~s~~l~~~~~~~~~-~---- 231 (301)
T PRK09599 160 YLHAGPVGAGHFVKMVHNGIEYGMMQAYAEGFELLEASRFDL---DLAAVAEVWRRGSVIRSWLLDLTADALAE-D---- 231 (301)
T ss_pred eEeECCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC---CHHHHHHHHhCCcHHHHHHHHHHHHHHhc-C----
Confidence 5689999999999999999999999999999999985 3566 8899999999987 799999999999964 3
Q ss_pred cchhhhccccCCCcchHHHHHHHHhcCCCchhhHHHHHHHhhccCc
Q psy9637 427 PLVEKIKDYAGQKGTGKWTAISALDYGVPVTLIGESVFSRCLSSLF 472 (490)
Q Consensus 427 ~~l~~i~~~~~~~g~g~w~~~~a~~~~~p~~~i~~a~~~r~~s~~~ 472 (490)
+.++.+.+.+.+.++.+|++++|.+.++|+|++++|++.|+.|...
T Consensus 232 ~~~~~~~~~~kd~~~~~~~~~~A~~~~~~~P~~~~a~~~~~~~~~~ 277 (301)
T PRK09599 232 PKLDEISGYVEDSGEGRWTVEEAIDLAVPAPVIAAALFMRFRSRQE 277 (301)
T ss_pred CCHHHHHHHHHhhCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhccC
Confidence 2234444555568889999999999999999999999999888744
|
|
| >PRK07502 cyclohexadienyl dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.5e-14 Score=143.59 Aligned_cols=159 Identities=21% Similarity=0.305 Sum_probs=121.0
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCC--eEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCch
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGF--TVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSA 81 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~ 81 (490)
.++|+|||+|.||..+|..|.++|+ +|++|||++++.+.+.+.+.. ...+.++.+++.. +|+||+|+|.. .
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~---~~~~~~~~~~~~~---aDvViiavp~~-~ 78 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLG---DRVTTSAAEAVKG---ADLVILCVPVG-A 78 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCC---ceecCCHHHHhcC---CCEEEECCCHH-H
Confidence 3689999999999999999999995 899999999988877665431 1234567776665 99999999995 6
Q ss_pred HHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccccccc-CCCCCcc-ccc-------cCC-c---cCCCCCc
Q psy9637 82 VDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGC-GVSGGED-GAR-------YGP-S---LMPGGNP 148 (490)
Q Consensus 82 v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~-~vsGg~~-~a~-------~G~-~---im~GG~~ 148 (490)
+.+++.++.+.++++.+|+|.++..........+. ...+++|+++ |+.|++. +.. .|. . .+.++++
T Consensus 79 ~~~v~~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~-~~~~~~~v~~hPm~g~e~~G~~~a~~~l~~g~~~~l~~~~~~~~ 157 (307)
T PRK07502 79 SGAVAAEIAPHLKPGAIVTDVGSVKASVIAAMAPH-LPEGVHFIPGHPLAGTEHSGPDAGFAELFENRWCILTPPEGTDP 157 (307)
T ss_pred HHHHHHHHHhhCCCCCEEEeCccchHHHHHHHHHh-CCCCCeEEeCCCCCCCcccchhhcCHHHHCCCeEEEeCCCCCCH
Confidence 78888888888999999999988764443333332 2357789988 8887652 222 222 2 2346788
Q ss_pred chHHHHHHHHHhhCCceeeCCC
Q psy9637 149 AAWPALKPIFQKLNPSFETSAP 170 (490)
Q Consensus 149 ~a~~~v~~ll~~l~~~~~~~g~ 170 (490)
++++.++++|+.+|..++.+++
T Consensus 158 ~~~~~~~~l~~~lG~~~~~~~~ 179 (307)
T PRK07502 158 AAVARLTAFWRALGARVEEMDP 179 (307)
T ss_pred HHHHHHHHHHHHcCCEEEEcCH
Confidence 8999999999999998887665
|
|
| >PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=6.5e-14 Score=143.66 Aligned_cols=267 Identities=14% Similarity=0.089 Sum_probs=170.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccC----C------CCeeccCCHHHHHhhCCCCcEEE
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAK----G------TNIIGAHSLEELVKNLKKPRRVM 73 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~----~------~~i~~~~s~~e~v~~l~~~dvIi 73 (490)
+|||+|||.|.||..+|..|+++| +|++|.|+++..+.+.+.+.. + .++...+++.+.++. +|+||
T Consensus 7 ~mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~---aDlVi 82 (341)
T PRK12439 7 EPKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANC---ADVVV 82 (341)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhc---CCEEE
Confidence 579999999999999999999999 688999999999888765321 1 134456777776665 89999
Q ss_pred EecCCCchHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHH-HHHHHc-cccccccCCCCCcccccc---CC--ccCCCC
Q psy9637 74 MLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRS-KALEAK-GLLYVGCGVSGGEDGARY---GP--SLMPGG 146 (490)
Q Consensus 74 l~vp~~~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~-~~l~~~-gi~~ld~~vsGg~~~a~~---G~--~im~GG 146 (490)
++||+ ..++++++++.+.+.++.++|.+.++....+.++. +.+.+. +- ....+..||.-+.+ |. .+.++.
T Consensus 83 lavps-~~~~~vl~~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~~~l~~--~~~~~l~GP~~a~ev~~g~~t~~via~ 159 (341)
T PRK12439 83 MGVPS-HGFRGVLTELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEEVLPG--HPAGILAGPNIAREVAEGYAAAAVLAM 159 (341)
T ss_pred EEeCH-HHHHHHHHHHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHHHHcCC--CCeEEEECCCHHHHHHcCCCeEEEEEe
Confidence 99998 58999999999999888889998888765433333 233221 10 01123445554442 44 233343
Q ss_pred -CcchHHHHHHHHHhhCCceeeCCCCCCCCCCHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHH
Q psy9637 147 -NPAAWPALKPIFQKLNPSFETSAPTPKPQRDKKEFLENIRQA-----------------LYASKIVSYAQGFMLMRQAA 208 (490)
Q Consensus 147 -~~~a~~~v~~ll~~l~~~~~~~g~~g~~~g~~a~~~Kll~n~-----------------l~~~~~~~~aE~~~la~~a~ 208 (490)
+++..+.++.+|+.-+-+++...+.- ..++.|.+.|. ..+....++.|+..++++.
T Consensus 160 ~~~~~~~~v~~lf~~~~~~v~~s~Di~-----gve~~~alkNv~aia~G~~~g~~~g~n~~aali~~~~~E~~~~~~a~- 233 (341)
T PRK12439 160 PDQHLATRLSPLFRTRRFRVYTTDDVV-----GVEMAGALKNVFAIAVGMGYSLGIGENTRAMVIARALREMTKLGVAM- 233 (341)
T ss_pred CCHHHHHHHHHHhCCCCEEEEEcCchH-----HHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHh-
Confidence 44556677777765443333322210 13344444444 3344556778888888888
Q ss_pred HHhCCCCCHHHHHHHHhcccchhhHhHhHhHHhhccCcccccccCCh-hHHHH------HHHHHHHHHHHHHHHHHcCCC
Q psy9637 209 EIHGWKLNYGGIALMWRGGCIIRSVFLGNIKAAFDKNPALSNLLLDP-FFKDA------IHATQSSWRAVVSQSALLGIP 281 (490)
Q Consensus 209 ~~~~~Gld~~~v~~i~~~g~~~~s~~l~~i~~~~~~~~~~~~~~~~~-~f~~~------l~~~~kDl~~~~~~A~~~gv~ 281 (490)
|.+++++...-.-| +++-.+.....+|..+...+-.. .+... +-......+.+.+.++++++.
T Consensus 234 -----G~~~~t~~gl~G~G-----Dl~~Tc~s~~sRN~~~G~~l~~g~~~~~~~~~~~~~~EG~~~~~~~~~~~~~~~~~ 303 (341)
T PRK12439 234 -----GGNPETFAGLAGMG-----DLIVTCTSQRSRNRHVGEQLGAGKPIDEIIASMNQVAEGVKAASVVMEFADEYGLN 303 (341)
T ss_pred -----CCCcccccccchhh-----hhhhhccCCCCccHHHHHHHHCCCCHHHHHHhcCCEEehHHHHHHHHHHHHHhCCC
Confidence 88888887654322 23333333333444433322111 11111 233567788899999999999
Q ss_pred chHHHHHHHHHH
Q psy9637 282 TPAFATALAFYD 293 (490)
Q Consensus 282 ~P~~~aa~~~~~ 293 (490)
+|+++++++++.
T Consensus 304 ~Pi~~~~~~il~ 315 (341)
T PRK12439 304 MPIAREVDAVIN 315 (341)
T ss_pred CCHHHHHHHHHh
Confidence 999999998874
|
|
| >PRK06522 2-dehydropantoate 2-reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.5e-13 Score=135.64 Aligned_cols=259 Identities=19% Similarity=0.180 Sum_probs=151.4
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccC---CC---CeeccCCHHHHHhhCCCCcEEEEecCC
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAK---GT---NIIGAHSLEELVKNLKKPRRVMMLVKA 78 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~---~~---~i~~~~s~~e~v~~l~~~dvIil~vp~ 78 (490)
|||+|||+|.||..+|..|+++|++|++++|+++..+.+.+.+.. +. ++...+++.++ +.+|+||+++|+
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~----~~~d~vila~k~ 76 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAEL----GPQDLVILAVKA 76 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHc----CCCCEEEEeccc
Confidence 489999999999999999999999999999998888887765432 00 11223445443 348999999998
Q ss_pred CchHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHc----cccccccCCCCCccccccCC-ccCCCCC---cch
Q psy9637 79 GSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAK----GLLYVGCGVSGGEDGARYGP-SLMPGGN---PAA 150 (490)
Q Consensus 79 ~~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~----gi~~ld~~vsGg~~~a~~G~-~im~GG~---~~a 150 (490)
. +++++++.+.+.+.++.+||...|+... .....+.+... |+.+..+-..++..-...+. .+.+|.. .+.
T Consensus 77 ~-~~~~~~~~l~~~l~~~~~iv~~~nG~~~-~~~l~~~~~~~~i~~~~~~~~~~~~~p~~v~~~~~g~~~ig~~~~~~~~ 154 (304)
T PRK06522 77 Y-QLPAALPSLAPLLGPDTPVLFLQNGVGH-LEELAAYIGPERVLGGVVTHAAELEGPGVVRHTGGGRLKIGEPDGESAA 154 (304)
T ss_pred c-cHHHHHHHHhhhcCCCCEEEEecCCCCc-HHHHHHhcCcccEEEEEEEEeeEecCCCEEEEcCCCCEEEeCCCCCcHH
Confidence 5 8899999999999888899998887532 12222222221 22233332222111111222 3333322 233
Q ss_pred HHHHHHHHHhhCCceeeCCCCCCCCCCHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHH
Q psy9637 151 WPALKPIFQKLNPSFETSAPTPKPQRDKKEFLENIRQALYA---------------------SKIVSYAQGFMLMRQAAE 209 (490)
Q Consensus 151 ~~~v~~ll~~l~~~~~~~g~~g~~~g~~a~~~Kll~n~l~~---------------------~~~~~~aE~~~la~~a~~ 209 (490)
.+.+.++|+..+..+...... ....+.|++.|+... .....+.|...++++.
T Consensus 155 ~~~l~~~l~~~~~~~~~~~di-----~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~~~v~~a~-- 227 (304)
T PRK06522 155 AEALADLLNAAGLDVEWSPDI-----RTEIWRKLWVNCVINPLTALLGCTNGELLADPDYRALIRALMEEVAAVAEAE-- 227 (304)
T ss_pred HHHHHHHHHhcCCCCCCChHH-----HHHHHHHHHHHhchhHHHHHhCCChhHHhcCccHHHHHHHHHHHHHHHHHHc--
Confidence 566777777666543322111 245566777665332 2334456666666665
Q ss_pred HhCCCCCHHHHHHHHhccc----chhhHhHhHhHHhhccCcccccccCChhHHHHHHHHHHHHHHHHHHHHHcCCCchHH
Q psy9637 210 IHGWKLNYGGIALMWRGGC----IIRSVFLGNIKAAFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSALLGIPTPAF 285 (490)
Q Consensus 210 ~~~~Gld~~~v~~i~~~g~----~~~s~~l~~i~~~~~~~~~~~~~~~~~~f~~~l~~~~kDl~~~~~~A~~~gv~~P~~ 285 (490)
|+.++.+.+.+.+..-+ -.+|.+++++... + + .+++. -...+++.|+++|+|+|..
T Consensus 228 --G~~~~~~~~~~~~~~~~~~~~~~~sSm~~D~~~g---------r---~---tEid~---i~G~~v~~a~~~gv~~P~~ 287 (304)
T PRK06522 228 --GVHLSVEEVREYVRQVIQKTAANTSSMLQDLEAG---------R---P---TEIDA---IVGYVLRRGRKHGIPTPLN 287 (304)
T ss_pred --CCCCChHHHHHHHHHHhhccCCCCchHHHHHHcC---------C---C---cccch---hccHHHHHHHHcCCCCcHH
Confidence 44445454444332110 1111222221100 0 0 01111 1455899999999999999
Q ss_pred HHHHHHHHHHH
Q psy9637 286 ATALAFYDGYR 296 (490)
Q Consensus 286 ~aa~~~~~~~~ 296 (490)
+..++.++...
T Consensus 288 ~~l~~~~~~~~ 298 (304)
T PRK06522 288 DALYGLLKAKE 298 (304)
T ss_pred HHHHHHHHHHH
Confidence 99998887654
|
|
| >PF14833 NAD_binding_11: NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase; PDB: 3OBB_A 3Q3C_A 2UYY_D 3G0O_A 1WP4_A 2CVZ_B 1YB4_A 3PDU_G 2I9P_D 2GF2_D | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.3e-14 Score=125.14 Aligned_cols=121 Identities=17% Similarity=0.199 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhcccchhhHhHhHhHHhhccCcccccccCChhH
Q psy9637 178 KKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGGCIIRSVFLGNIKAAFDKNPALSNLLLDPFF 257 (490)
Q Consensus 178 ~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~~~v~~i~~~g~~~~s~~l~~i~~~~~~~~~~~~~~~~~~f 257 (490)
.+..+|+++|++.++++.+++|++.+++++ |||++++++++..+. +.|++++...+. .+.+..+.|.|
T Consensus 2 ~g~~~Kl~~N~l~~~~~~~~aEa~~la~~~------Gld~~~~~~vl~~~~-~~s~~~~~~~~~-----~~~~~~~~~~f 69 (122)
T PF14833_consen 2 AGQAMKLANNLLIAANMAALAEALALAEKA------GLDPEQLLDVLSAGS-GGSWMLKNRAPR-----MILNGDFDPGF 69 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------TS-HHHHHHHHHTST-THBHHHHHHHHH-----HHHTTTTCSSS
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CCCHHHHHHHHccCC-cCchHHHhhhhh-----hhhcccCCccc
Confidence 468999999999999999999999999999 999999999998876 567777654221 13455667776
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhCCChhhhHHHHHHhh
Q psy9637 258 KDAIHATQSSWRAVVSQSALLGIPTPAFATALAFYDGYRSKRLPANLLQAQRDYF 312 (490)
Q Consensus 258 ~~~l~~~~kDl~~~~~~A~~~gv~~P~~~aa~~~~~~~~~~g~~~~~~~a~rd~f 312 (490)
+++.+.||++++++.|++.|+|+|+.+.+.++|+.+.+.|+++.|..++.+++
T Consensus 70 --~l~~~~KDl~l~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~D~sai~~~~ 122 (122)
T PF14833_consen 70 --SLDLARKDLRLALDLAKEAGVPLPLGSAARQLYQAAKAQGGGDEDFSAIYKLL 122 (122)
T ss_dssp --BHHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHTTTTTSBGGGGHHHH
T ss_pred --hhHhhccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHhHC
Confidence 68899999999999999999999999999999999999999999888776653
|
... |
| >PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.4e-13 Score=138.58 Aligned_cols=268 Identities=12% Similarity=0.120 Sum_probs=147.4
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccC---------CCCeeccCCHHHHHhhCCCCcEEEEe
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAK---------GTNIIGAHSLEELVKNLKKPRRVMML 75 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~---------~~~i~~~~s~~e~v~~l~~~dvIil~ 75 (490)
|||+|||.|.||..+|..|+++|++|++|+|+++.++.+.+.+.. ..++....++.+.+.. .+|+||++
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--~~Dliiia 78 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSD--NATCIILA 78 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhC--CCCEEEEE
Confidence 479999999999999999999999999999999988887764211 1123345666666531 38999999
Q ss_pred cCCCchHHHHHHhhcc-cCCCCCEEEcCCCCChHHHHHHH-HHHHHc-cccccccCCCCCccc----cccCC-ccCCCCC
Q psy9637 76 VKAGSAVDDFIDKLVP-LLEKGDIIIDGGNSEYQDTDRRS-KALEAK-GLLYVGCGVSGGEDG----ARYGP-SLMPGGN 147 (490)
Q Consensus 76 vp~~~~v~~vl~~l~~-~l~~g~iiId~s~~~~~~~~~~~-~~l~~~-gi~~ld~~vsGg~~~----a~~G~-~im~GG~ 147 (490)
||+ ..++++++++.+ .+.++..||-..|+....+.... +.+.+. +.+ ...+..||.. +...+ .+..+|.
T Consensus 79 vks-~~~~~~l~~l~~~~l~~~~~vv~~~nGi~~~~~~~~~~~l~~~~~~~--~~~~~~Gp~~a~~~~~~~~~~~~~~~~ 155 (326)
T PRK14620 79 VPT-QQLRTICQQLQDCHLKKNTPILICSKGIEKSSLKFPSEIVNEILPNN--PIAILSGPSFAKEIAEKLPCSIVLAGQ 155 (326)
T ss_pred eCH-HHHHHHHHHHHHhcCCCCCEEEEEEcCeeCCCCccHHHHHHHHcCCC--ceEeecCCcHHHHHHcCCCcEEEEecC
Confidence 999 589999999998 88877777777777633211111 111111 111 0111223332 22333 3333443
Q ss_pred cchHHHHHHHHHhhCCcee---eCCCCCCCCCCHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHH
Q psy9637 148 PAAWPALKPIFQKLNPSFE---TSAPTPKPQRDKKEFLENIRQALYAS-----------------KIVSYAQGFMLMRQA 207 (490)
Q Consensus 148 ~~a~~~v~~ll~~l~~~~~---~~g~~g~~~g~~a~~~Kll~n~l~~~-----------------~~~~~aE~~~la~~a 207 (490)
.. +..+.+.+.+....+ ...+. ....+.|++.|.+... ...++.|+..++++.
T Consensus 156 ~~--~~~~~l~~~l~~~~~~~~~~~Di-----~g~~~~k~~~N~ia~~~g~~~g~~~~~n~~~~l~~~~~~E~~~v~~a~ 228 (326)
T PRK14620 156 NE--TLGSSLISKLSNENLKIIYSQDI-----IGVQIGAALKNIIAIACGIVLGKNLGNNAHAAVITKGMNEIKTLYSAK 228 (326)
T ss_pred CH--HHHHHHHHHHCCCCeEEEecCcc-----hhhhhHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHh
Confidence 32 233444444444333 22222 1235666666664222 234455666666665
Q ss_pred HHHhCCCCCHHHHHHHHhcccchhhHhHhHhHHhhccCcccccccCChh-HHH------HHHHHHHHHHHHHHHHHHcCC
Q psy9637 208 AEIHGWKLNYGGIALMWRGGCIIRSVFLGNIKAAFDKNPALSNLLLDPF-FKD------AIHATQSSWRAVVSQSALLGI 280 (490)
Q Consensus 208 ~~~~~~Gld~~~v~~i~~~g~~~~s~~l~~i~~~~~~~~~~~~~~~~~~-f~~------~l~~~~kDl~~~~~~A~~~gv 280 (490)
|.+++++++...-.-|. +...+.....+|..+...+-... ... +.-.....++.+++.++++|+
T Consensus 229 ----G~~~~~~~~~gl~g~gd-----l~~t~~~~~~rN~~~G~~l~~g~~~~d~~~~~~~~vegi~~~~~v~~~a~~~~i 299 (326)
T PRK14620 229 ----NGSIDLNTLIGPSCLGD-----LILTCTTLHSRNMSFGFKIGNGFNINQILSEGKSVIEGFSTVKPLISLAKKLNI 299 (326)
T ss_pred ----CCCCCcchhhccchhhh-----hhheecCCCCCcHHHHHHHHCCCCHHHHHHhCCCEeecHHHHHHHHHHHHHhCC
Confidence 33447777743211110 11111111112211111110000 000 001233445689999999999
Q ss_pred CchHHHHHHHHHH
Q psy9637 281 PTPAFATALAFYD 293 (490)
Q Consensus 281 ~~P~~~aa~~~~~ 293 (490)
++|+++..++++.
T Consensus 300 ~~P~~~~l~~~~~ 312 (326)
T PRK14620 300 ELPICESIYNLLY 312 (326)
T ss_pred CCCHHHHHHHHHh
Confidence 9999999988763
|
|
| >PRK06545 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.4e-13 Score=139.27 Aligned_cols=160 Identities=18% Similarity=0.206 Sum_probs=117.0
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
++|+|||+|.||.+||+.|.++|++|.+|+++++..+.....+.. ..-...+++.++++. +|+||+|||.. .+.+
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~---aDlVilavP~~-~~~~ 75 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARALGFG-VIDELAADLQRAAAE---ADLIVLAVPVD-ATAA 75 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHhcCC-CCcccccCHHHHhcC---CCEEEEeCCHH-HHHH
Confidence 379999999999999999999999999999887765544333221 000124566676665 99999999995 7889
Q ss_pred HHHhhcc-cCCCCCEEEcCCCCChHHHHHHHHHHHHccccccc-cCCCCCcc-c-------cccCC-ccCCC---CCcch
Q psy9637 85 FIDKLVP-LLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVG-CGVSGGED-G-------ARYGP-SLMPG---GNPAA 150 (490)
Q Consensus 85 vl~~l~~-~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld-~~vsGg~~-~-------a~~G~-~im~G---G~~~a 150 (490)
++.++.+ .++++.+|.|.+++........ +.+...+.+|++ .|+.|++. + ...|. .+++. .+++.
T Consensus 76 vl~~l~~~~l~~~~ivtDv~SvK~~i~~~~-~~~~~~~~~~ig~HPMaG~e~sG~~aa~~~lf~g~~~il~~~~~~~~~~ 154 (359)
T PRK06545 76 LLAELADLELKPGVIVTDVGSVKGAILAEA-EALLGDLIRFVGGHPMAGSHKSGVAAARADLFENAPWVLTPDDHTDPDA 154 (359)
T ss_pred HHHHHhhcCCCCCcEEEeCccccHHHHHHH-HHhcCCCCeEEeeCCcCcCchhhHHHhcHHHHCCCcEEEecCCCCCHHH
Confidence 9999987 4889999999998875443333 333345678998 48887642 1 22344 33433 56788
Q ss_pred HHHHHHHHHhhCCceeeCCC
Q psy9637 151 WPALKPIFQKLNPSFETSAP 170 (490)
Q Consensus 151 ~~~v~~ll~~l~~~~~~~g~ 170 (490)
++.++++|+.+|..++.+.+
T Consensus 155 ~~~v~~l~~~lGa~~v~~~~ 174 (359)
T PRK06545 155 VAELKDLLSGTGAKFVVLDA 174 (359)
T ss_pred HHHHHHHHHHcCCEEEECCH
Confidence 99999999999998877665
|
|
| >COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.8e-12 Score=128.51 Aligned_cols=160 Identities=20% Similarity=0.287 Sum_probs=113.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCCh--HHHHHHHHcccCCCCeeccCCH-HHHHhhCCCCcEEEEecCCCc
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTT--AKVDSFLANEAKGTNIIGAHSL-EELVKNLKKPRRVMMLVKAGS 80 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~--~~~~~l~~~g~~~~~i~~~~s~-~e~v~~l~~~dvIil~vp~~~ 80 (490)
+++|+|+|+|.||..+|+.|.++|+.|.+++++. +..+...+.+... ....+. .+.+. .+|+||++||-.
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d---~~~~~~~~~~~~---~aD~VivavPi~- 75 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVID---ELTVAGLAEAAA---EADLVIVAVPIE- 75 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCccc---ccccchhhhhcc---cCCEEEEeccHH-
Confidence 4789999999999999999999999987765554 4444433333310 011222 33333 489999999994
Q ss_pred hHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccccccc-CCCCC--ccccccCC-cc-CCCC--CcchHHH
Q psy9637 81 AVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGC-GVSGG--EDGARYGP-SL-MPGG--NPAAWPA 153 (490)
Q Consensus 81 ~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~-~vsGg--~~~a~~G~-~i-m~GG--~~~a~~~ 153 (490)
++.++++++.|.+++|.+|+|.+++.........+...+.. +|+.. |++|+ .....++. .+ .++. +.+.+++
T Consensus 76 ~~~~~l~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~-~~vg~HPM~G~~~~~~lf~~~~~vltp~~~~~~~~~~~ 154 (279)
T COG0287 76 ATEEVLKELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDV-RFVGGHPMFGPEADAGLFENAVVVLTPSEGTEKEWVEE 154 (279)
T ss_pred HHHHHHHHhcccCCCCCEEEecccccHHHHHHHHHhccCCC-eeEecCCCCCCcccccccCCCEEEEcCCCCCCHHHHHH
Confidence 89999999999999999999999987544443333333333 88888 77777 34444555 43 4443 3458899
Q ss_pred HHHHHHhhCCceeeCCCC
Q psy9637 154 LKPIFQKLNPSFETSAPT 171 (490)
Q Consensus 154 v~~ll~~l~~~~~~~g~~ 171 (490)
+..+|+.+|++++.+.+.
T Consensus 155 ~~~~~~~~ga~~v~~~~e 172 (279)
T COG0287 155 VKRLWEALGARLVEMDAE 172 (279)
T ss_pred HHHHHHHcCCEEEEcChH
Confidence 999999999998887663
|
|
| >PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.7e-13 Score=137.57 Aligned_cols=190 Identities=14% Similarity=0.098 Sum_probs=129.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHc--------------ccC--------CCCeeccCCHHH
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLAN--------------EAK--------GTNIIGAHSLEE 61 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~--------------g~~--------~~~i~~~~s~~e 61 (490)
..+|+|||+|.||..||..|+++|++|++||++++.++...+. +.. ..++...++. +
T Consensus 3 i~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~ 81 (291)
T PRK06035 3 IKVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSY-E 81 (291)
T ss_pred CcEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCH-H
Confidence 4689999999999999999999999999999999987653221 110 0123344444 3
Q ss_pred HHhhCCCCcEEEEecCCCchH-HHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHH----ccccccc-cCCCCCccc
Q psy9637 62 LVKNLKKPRRVMMLVKAGSAV-DDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEA----KGLLYVG-CGVSGGEDG 135 (490)
Q Consensus 62 ~v~~l~~~dvIil~vp~~~~v-~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~----~gi~~ld-~~vsGg~~~ 135 (490)
.++. +|+||.|+|....+ .+++.++.+.++++.+|+..+++. ...++.+.+.. .|+||++ ++++++.+.
T Consensus 82 ~~~~---aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg~--~~~~la~~~~~~~r~ig~hf~~P~~~~~~vEv 156 (291)
T PRK06035 82 SLSD---ADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSGI--MIAEIATALERKDRFIGMHWFNPAPVMKLIEV 156 (291)
T ss_pred HhCC---CCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCCC--CHHHHHhhcCCcccEEEEecCCCcccCccEEE
Confidence 4444 89999999997654 456678888888888887555443 33444444433 2889998 778877653
Q ss_pred cccCC-ccCCCCCcchHHHHHHHHHhhCCceeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q psy9637 136 ARYGP-SLMPGGNPAAWPALKPIFQKLNPSFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWK 214 (490)
Q Consensus 136 a~~G~-~im~GG~~~a~~~v~~ll~~l~~~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~G 214 (490)
..|+ + ++++++++.++++.++..++++++.+. .-..|+++| .+.|++.+.+. |
T Consensus 157 -~~g~~T-----~~e~~~~~~~~~~~lgk~~v~v~d~pg-----fv~nRl~~~--------~~~ea~~~~~~-------g 210 (291)
T PRK06035 157 -VRAALT-----SEETFNTTVELSKKIGKIPIEVADVPG-----FFTTRFIEG--------WLLEAIRSFEI-------G 210 (291)
T ss_pred -eCCCCC-----CHHHHHHHHHHHHHcCCeEEEeCCCCC-----eeHHHHHHH--------HHHHHHHHHHc-------C
Confidence 3555 3 789999999999999999988876541 123344444 34555555443 4
Q ss_pred -CCHHHHHHHHh
Q psy9637 215 -LNYGGIALMWR 225 (490)
Q Consensus 215 -ld~~~v~~i~~ 225 (490)
.+++++=++++
T Consensus 211 ~a~~~~iD~~~~ 222 (291)
T PRK06035 211 IATIKDIDEMCK 222 (291)
T ss_pred CCCHHHHHHHHh
Confidence 34565555553
|
|
| >PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.4e-14 Score=142.39 Aligned_cols=119 Identities=34% Similarity=0.581 Sum_probs=101.7
Q ss_pred cceeecCCCCcchhHHhhhhHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhccCc-chhHHHHHHHHHhcccCCCCC
Q psy9637 348 CCDWVGEQGAGHFVKMVHNGIEYGDMQLICEAYHLMTGALGMSHDEMSAVFEDWNKGE-LDSFLIEITKDILKFKDTDGA 426 (490)
Q Consensus 348 c~~~~g~~g~gh~vkmvhngiey~~m~~~~E~~~~~~~~~~~~~~~~~~~~~~w~~g~-~~s~l~~~~~~~~~~~~~~~~ 426 (490)
++.|+|+.|+||++||+||.+.+++|++++|++.++++ .|+ ..|+.++++.|+.|+ ++||+++....++...+
T Consensus 158 ~~~~~G~~g~a~~~Kl~~n~~~~~~~~~~aEa~~l~~~-~g~-~ld~~~~~~~~~~~~~~~s~~l~~~~~~~~~~~---- 231 (299)
T PRK12490 158 GYVHAGPVGSGHFLKMVHNGIEYGMMQAYAEGLELLDK-SDF-DFDVEDVARLWRNGSVIRSWLLDLTVKALAEDP---- 231 (299)
T ss_pred cEEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccc-CCCHHHHHHHHcCCcHHHHHHHHHHHHHHhhCC----
Confidence 57799999999999999999999999999999999997 561 128999999999876 99999999988886422
Q ss_pred cchhhhccccCCCcchHHHHHHHHhcCCCchhhHHHHHHHhhccCch
Q psy9637 427 PLVEKIKDYAGQKGTGKWTAISALDYGVPVTLIGESVFSRCLSSLFD 473 (490)
Q Consensus 427 ~~l~~i~~~~~~~g~g~w~~~~a~~~~~p~~~i~~a~~~r~~s~~~~ 473 (490)
+ ...+.+...+.|+.+|+++.|.+.++|+|+++.+++.|+.+..+.
T Consensus 232 ~-~~~l~~~~KD~~~~~l~~~~A~~~g~~~P~~~~a~~~~~~~~~~~ 277 (299)
T PRK12490 232 K-LAGIKGYVNDSGEGRWTVEEAIELAVAAPVIAASLFMRFASQEDD 277 (299)
T ss_pred C-hhhhhHHHHhcCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCccC
Confidence 1 234556666888999999999999999999999999999987764
|
|
| >PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.4e-13 Score=133.34 Aligned_cols=195 Identities=16% Similarity=0.202 Sum_probs=131.3
Q ss_pred CCCCCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHH-----------HHHcccCC--------CCeeccCCHHH
Q psy9637 1 MAAKGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDS-----------FLANEAKG--------TNIIGAHSLEE 61 (490)
Q Consensus 1 M~~~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~-----------l~~~g~~~--------~~i~~~~s~~e 61 (490)
|+ ++||+|||+|.||.++|..|+++|++|++||+++++++. +.+.+... .++..+++.++
T Consensus 1 ~~-~~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~~ 79 (282)
T PRK05808 1 MG-IQKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLDD 79 (282)
T ss_pred CC-ccEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH
Confidence 54 468999999999999999999999999999999998752 33333110 13445666654
Q ss_pred HHhhCCCCcEEEEecCCCchHH-HHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHH----Hccccccc-cCCCCCccc
Q psy9637 62 LVKNLKKPRRVMMLVKAGSAVD-DFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALE----AKGLLYVG-CGVSGGEDG 135 (490)
Q Consensus 62 ~v~~l~~~dvIil~vp~~~~v~-~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~----~~gi~~ld-~~vsGg~~~ 135 (490)
+++ +|+||+|+|....++ +++.++.+.++++.+|+..+++.+.. .+.+.+. --|.||.. +++..+.+
T Consensus 80 -~~~---aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~~~~--~la~~~~~~~r~ig~h~~~P~~~~~~ve- 152 (282)
T PRK05808 80 -LKD---ADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSSLSIT--ELAAATKRPDKVIGMHFFNPVPVMKLVE- 152 (282)
T ss_pred -hcc---CCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHH--HHHHhhCCCcceEEeeccCCcccCccEE-
Confidence 444 899999999865655 77788989898888774444433222 4444442 23677776 45555553
Q ss_pred cccCCccCCCCCcchHHHHHHHHHhhCCceeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-
Q psy9637 136 ARYGPSLMPGGNPAAWPALKPIFQKLNPSFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWK- 214 (490)
Q Consensus 136 a~~G~~im~GG~~~a~~~v~~ll~~l~~~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~G- 214 (490)
...| .+.+++.++.++++|+.+|..+++++... | .. ........++|++.+.+. |
T Consensus 153 v~~g----~~t~~e~~~~~~~l~~~lGk~pv~~~d~~---g---~i-------~~Ri~~~~~~ea~~~~~~-------gv 208 (282)
T PRK05808 153 IIRG----LATSDATHEAVEALAKKIGKTPVEVKNAP---G---FV-------VNRILIPMINEAIFVLAE-------GV 208 (282)
T ss_pred EeCC----CCCCHHHHHHHHHHHHHcCCeeEEecCcc---C---hH-------HHHHHHHHHHHHHHHHHh-------CC
Confidence 2222 45688999999999999999988876542 1 11 122344556777777765 4
Q ss_pred CCHHHHHHHHhcc
Q psy9637 215 LNYGGIALMWRGG 227 (490)
Q Consensus 215 ld~~~v~~i~~~g 227 (490)
.+++++=.+++.|
T Consensus 209 ~~~~diD~~~~~g 221 (282)
T PRK05808 209 ATAEDIDEGMKLG 221 (282)
T ss_pred CCHHHHHHHHHhC
Confidence 4566666665543
|
|
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=99.50 E-value=9.9e-14 Score=129.89 Aligned_cols=113 Identities=23% Similarity=0.374 Sum_probs=86.6
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccC---------------CCCeeccCCHHHHHhhCCCC
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAK---------------GTNIIGAHSLEELVKNLKKP 69 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~---------------~~~i~~~~s~~e~v~~l~~~ 69 (490)
|||+|||+|.+|.++|..|+++||+|++||.++++++.+.+.... ..++.++++..+.+.. +
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~---a 77 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIKD---A 77 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH----
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhhc---c
Confidence 589999999999999999999999999999999999887642111 3567788899998877 8
Q ss_pred cEEEEecCCCc---------hHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHH-HHHHHc
Q psy9637 70 RRVMMLVKAGS---------AVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRS-KALEAK 120 (490)
Q Consensus 70 dvIil~vp~~~---------~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~-~~l~~~ 120 (490)
|++|+|||++. .++++++.+.+.++++++||.-||..|.++.+.. ..+++.
T Consensus 78 dv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~ 138 (185)
T PF03721_consen 78 DVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKR 138 (185)
T ss_dssp SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHH
T ss_pred ceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhh
Confidence 99999998753 4778889999999999999999999999999776 444443
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >PRK06249 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.8e-12 Score=131.48 Aligned_cols=260 Identities=13% Similarity=0.078 Sum_probs=150.7
Q ss_pred CCCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccC-----CC----CeeccCCHHHHHhhCCCCcEEE
Q psy9637 3 AKGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAK-----GT----NIIGAHSLEELVKNLKKPRRVM 73 (490)
Q Consensus 3 ~~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~-----~~----~i~~~~s~~e~v~~l~~~dvIi 73 (490)
.+|+|+|||+|.||..+|..|+++||+|+++.|++. +.+.+.+.. +. .+...+++++ ++.+|+||
T Consensus 4 ~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~----~~~~D~vi 77 (313)
T PRK06249 4 ETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSDY--EAVRENGLQVDSVHGDFHLPPVQAYRSAED----MPPCDWVL 77 (313)
T ss_pred cCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCH--HHHHhCCeEEEeCCCCeeecCceEEcchhh----cCCCCEEE
Confidence 357999999999999999999999999999999863 444444321 10 0111223322 23489999
Q ss_pred EecCCCchHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHc----cccccccCCCCCccccccCC-ccCC---C
Q psy9637 74 MLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAK----GLLYVGCGVSGGEDGARYGP-SLMP---G 145 (490)
Q Consensus 74 l~vp~~~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~----gi~~ld~~vsGg~~~a~~G~-~im~---G 145 (490)
+|||.. ++.++++.+.+.+.++.+|+...|+.. ......+.+.+. |+.++.+...+...-...+. .+.+ .
T Consensus 78 lavK~~-~~~~~~~~l~~~~~~~~~iv~lqNG~~-~~e~l~~~~~~~~v~~g~~~~~a~~~~pg~v~~~~~g~~~iG~~~ 155 (313)
T PRK06249 78 VGLKTT-ANALLAPLIPQVAAPDAKVLLLQNGLG-VEEQLREILPAEHLLGGLCFICSNRVGPGVIHHLAYGRVNLGYHS 155 (313)
T ss_pred EEecCC-ChHhHHHHHhhhcCCCCEEEEecCCCC-cHHHHHHHCCCCcEEEEeeeEeEecCCCeEEEECCCCcEEEecCC
Confidence 999995 788899999999988889999988763 222233333221 44445444433221111222 2222 2
Q ss_pred CC------cchHHHHHHHHHhhCCceeeCCCCCCCCCCHHHHHHHHHHHHHH---------------------HHHHHHH
Q psy9637 146 GN------PAAWPALKPIFQKLNPSFETSAPTPKPQRDKKEFLENIRQALYA---------------------SKIVSYA 198 (490)
Q Consensus 146 G~------~~a~~~v~~ll~~l~~~~~~~g~~g~~~g~~a~~~Kll~n~l~~---------------------~~~~~~a 198 (490)
|+ .+..+.+..+|+..+..+...... ....+.|++.|+.+. .....+.
T Consensus 156 ~~~~~~~~~~~~~~l~~~l~~ag~~~~~~~di-----~~~~W~Kl~~N~~~n~ltal~~~~~g~l~~~~~~~~l~~~~~~ 230 (313)
T PRK06249 156 GPAADDGITARVEEGAALFRAAGIDSQAMPDL-----AQARWQKLVWNIPYNGLSVLLNASTDPLMADPDSRALIRALMA 230 (313)
T ss_pred CCcccchHHHHHHHHHHHHHhCCCCceeCchH-----HHHHHhHhheecchhHHHHHhCCChHHHHhCccHHHHHHHHHH
Confidence 32 245566777787766654433332 245566766665332 2333456
Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHH---hcccchhhHhHhHhHHhhccCcccccccCChhHHHHHHHHHHHHHHHHHHH
Q psy9637 199 QGFMLMRQAAEIHGWKLNYGGIALMW---RGGCIIRSVFLGNIKAAFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQS 275 (490)
Q Consensus 199 E~~~la~~a~~~~~~Gld~~~v~~i~---~~g~~~~s~~l~~i~~~~~~~~~~~~~~~~~~f~~~l~~~~kDl~~~~~~A 275 (490)
|+..++++. |+.++.+.+.+++ ....-.+|.|++++ ..+-..+++.. ...++++|
T Consensus 231 E~~~va~a~----Gi~~~~~~~~~~~~~~~~~~~~~sSM~qD~---------------~~gr~tEid~i---~G~vv~~a 288 (313)
T PRK06249 231 EVIQGAAAC----GHTLPEGYADHMLAVTERMPDYRPSMYHDF---------------EEGRPLELEAI---YANPLAAA 288 (313)
T ss_pred HHHHHHHhc----CCCCChhHHHHHHHHhhcCCCCCChHHHHH---------------HCCCcccHHHH---hhHHHHHH
Confidence 666666665 3344443332222 11111112222221 11111122222 46789999
Q ss_pred HHcCCCchHHHHHHHHHHHHHh
Q psy9637 276 ALLGIPTPAFATALAFYDGYRS 297 (490)
Q Consensus 276 ~~~gv~~P~~~aa~~~~~~~~~ 297 (490)
+++|+++|..+..++.++....
T Consensus 289 ~~~Gi~~P~~~~l~~~l~~~e~ 310 (313)
T PRK06249 289 RAAGCAMPRVEMLYQALEFLDR 310 (313)
T ss_pred HHhCCCCcHHHHHHHHHHHHHh
Confidence 9999999999999998876643
|
|
| >PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=3e-12 Score=131.66 Aligned_cols=267 Identities=10% Similarity=0.049 Sum_probs=170.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCC-------CeEEEEeCChH-----HHHHHHHcccC---------CCCeeccCCHHHH
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHG-------FTVVAYNRTTA-----KVDSFLANEAK---------GTNIIGAHSLEEL 62 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G-------~~V~v~dr~~~-----~~~~l~~~g~~---------~~~i~~~~s~~e~ 62 (490)
++||+|||.|.||.+||..|+++| |+|.+|.|+++ .++.+.+...+ +.++..++++.++
T Consensus 11 ~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~ea 90 (365)
T PTZ00345 11 PLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKEA 90 (365)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHHH
Confidence 478999999999999999999998 89999999976 35666543322 2456678888888
Q ss_pred HhhCCCCcEEEEecCCCchHHHHHHhhcc--cCCCCCEEEcCCCCChHHHH--H-HHHHHHHc-cccccccCCCCCcccc
Q psy9637 63 VKNLKKPRRVMMLVKAGSAVDDFIDKLVP--LLEKGDIIIDGGNSEYQDTD--R-RSKALEAK-GLLYVGCGVSGGEDGA 136 (490)
Q Consensus 63 v~~l~~~dvIil~vp~~~~v~~vl~~l~~--~l~~g~iiId~s~~~~~~~~--~-~~~~l~~~-gi~~ld~~vsGg~~~a 136 (490)
++. +|+|+++||+ +.++++++++.+ .+.++.+||.++.+...++. . ..+.+.+. +. .+.+..||.-|
T Consensus 91 v~~---aDiIvlAVPs-q~l~~vl~~l~~~~~l~~~~~iIS~aKGIe~~t~~~~~~sevi~e~l~~---~~~~LsGPs~A 163 (365)
T PTZ00345 91 VED---ADLLIFVIPH-QFLESVLSQIKENNNLKKHARAISLTKGIIVENGKPVLCSDVIEEELGI---PCCALSGANVA 163 (365)
T ss_pred Hhc---CCEEEEEcCh-HHHHHHHHHhccccccCCCCEEEEEeCCcccCCCCcccHHHHHHHHhCC---CeEEEECCCHH
Confidence 877 8999999999 689999999998 78777788887766543332 1 22333221 21 34445666555
Q ss_pred c----cCC-ccCC-CCCcchHHHHHHHHHhhCCceeeCCC-CCCCCCCHHHHHHH--------------HHHHHHHHHHH
Q psy9637 137 R----YGP-SLMP-GGNPAAWPALKPIFQKLNPSFETSAP-TPKPQRDKKEFLEN--------------IRQALYASKIV 195 (490)
Q Consensus 137 ~----~G~-~im~-GG~~~a~~~v~~ll~~l~~~~~~~g~-~g~~~g~~a~~~Kl--------------l~n~l~~~~~~ 195 (490)
. .-+ .+.+ +-+.+..+.++.+|+.=.-+++...+ .|. +-+-++|. =.|+-.+....
T Consensus 164 ~Eva~~~pt~~vias~~~~~a~~~~~lf~~~~frvy~s~Dv~Gv---El~galKNviAIa~Gi~dGl~~G~N~kaalitr 240 (365)
T PTZ00345 164 NDVAREEFSEATIGCEDKDDALIWQRLFDRPYFKINCVPDVIGV---EVCGALKNIIALAAGFCDGLGLGTNTKSAIIRI 240 (365)
T ss_pred HHHHcCCCcEEEEEeCCHHHHHHHHHHhCCCcEEEEEcCCcccc---hhhHHHHHHHHHHHHHHHhcCCChhHHHHHHHH
Confidence 3 233 3444 44666777777777632112222111 111 11122332 25677777788
Q ss_pred HHHHHHHHHHHHHHHhCCC--CCHHHHHHHHhcccchhhHhHhHhHHhhccCcccccccCCh----hHHHHH--------
Q psy9637 196 SYAQGFMLMRQAAEIHGWK--LNYGGIALMWRGGCIIRSVFLGNIKAAFDKNPALSNLLLDP----FFKDAI-------- 261 (490)
Q Consensus 196 ~~aE~~~la~~a~~~~~~G--ld~~~v~~i~~~g~~~~s~~l~~i~~~~~~~~~~~~~~~~~----~f~~~l-------- 261 (490)
+++|+..++++. | -++++++..-.-| ++.-.+.+ .+|.++...+-.. .+...+
T Consensus 241 gl~Em~~l~~a~------g~~~~~~T~~glaG~G-----DLi~Tc~s--SRN~~~G~~l~~g~~~~~~~~~~~~~~~~~~ 307 (365)
T PTZ00345 241 GLEEMKLFGKIF------FPNVMDETFFESCGLA-----DLITTCLG--GRNVRCAAEFAKRNGKKSWEEIEAELLNGQK 307 (365)
T ss_pred HHHHHHHHHHHh------CCCCCccchhccchHh-----HhhhcccC--CCcHHHHHHHhccCCCCCHHHHHHHhhCCcE
Confidence 888888888888 5 4777776553322 22222222 3444433332210 121111
Q ss_pred HHHHHHHHHHHHHHHHcCC--CchHHHHHHHHHH
Q psy9637 262 HATQSSWRAVVSQSALLGI--PTPAFATALAFYD 293 (490)
Q Consensus 262 ~~~~kDl~~~~~~A~~~gv--~~P~~~aa~~~~~ 293 (490)
-......+.+.+.++++++ .+|+++++++++.
T Consensus 308 vEG~~t~~~v~~l~~~~~i~~~~Pi~~~vy~il~ 341 (365)
T PTZ00345 308 LQGTVTLKEVYEVLESHDLKKEFPLFTVTYKIAF 341 (365)
T ss_pred echHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHh
Confidence 2356778889999999999 8999999998874
|
|
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.7e-12 Score=129.88 Aligned_cols=195 Identities=14% Similarity=0.075 Sum_probs=133.0
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH-----------ccc----CCCCeeccCCHHHHHhhCCC
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLA-----------NEA----KGTNIIGAHSLEELVKNLKK 68 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~-----------~g~----~~~~i~~~~s~~e~v~~l~~ 68 (490)
.++|+|||+|.||..||.+++.+||+|++||++++..+.+.+ .+. ...++..+++++++++.
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~--- 83 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVAD--- 83 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcC---
Confidence 368999999999999999999999999999999987665432 111 01345667888888776
Q ss_pred CcEEEEecCCCchHHHHH-HhhcccCCCCCEEEcCCCCChHHHHHHHHHHHH----ccccccccCCCCCccccccCCccC
Q psy9637 69 PRRVMMLVKAGSAVDDFI-DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEA----KGLLYVGCGVSGGEDGARYGPSLM 143 (490)
Q Consensus 69 ~dvIil~vp~~~~v~~vl-~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~----~gi~~ld~~vsGg~~~a~~G~~im 143 (490)
+|+|+.++|....++..+ .++.+.++++. ||.++||. ....+..+.+.. -|.||+..|-.-..- -++
T Consensus 84 aDlViEavpE~l~vK~~lf~~l~~~~~~~a-IlaSnTS~-l~~s~la~~~~~p~R~~g~HffnP~~~~pLV------EVv 155 (321)
T PRK07066 84 ADFIQESAPEREALKLELHERISRAAKPDA-IIASSTSG-LLPTDFYARATHPERCVVGHPFNPVYLLPLV------EVL 155 (321)
T ss_pred CCEEEECCcCCHHHHHHHHHHHHHhCCCCe-EEEECCCc-cCHHHHHHhcCCcccEEEEecCCccccCceE------EEe
Confidence 999999999998888655 77777787766 66777764 344444444432 266666554211100 123
Q ss_pred CC--CCcchHHHHHHHHHhhCCceeeCC-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Q psy9637 144 PG--GNPAAWPALKPIFQKLNPSFETSA-PTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGI 220 (490)
Q Consensus 144 ~G--G~~~a~~~v~~ll~~l~~~~~~~g-~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~~~v 220 (490)
.| -++++++++..+++.++...+.+. +.. +..++ -...+.+.|++.+.+.= ..+++++
T Consensus 156 ~g~~T~~e~~~~~~~f~~~lGk~pV~v~kd~p------GFi~N-------Rl~~a~~~EA~~lv~eG------vas~edI 216 (321)
T PRK07066 156 GGERTAPEAVDAAMGIYRALGMRPLHVRKEVP------GFIAD-------RLLEALWREALHLVNEG------VATTGEI 216 (321)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCEeEecCCCCc------cHHHH-------HHHHHHHHHHHHHHHhC------CCCHHHH
Confidence 33 367899999999999998776653 331 12222 22345667787777763 4678888
Q ss_pred HHHHhccc
Q psy9637 221 ALMWRGGC 228 (490)
Q Consensus 221 ~~i~~~g~ 228 (490)
=.+++.|.
T Consensus 217 D~a~~~g~ 224 (321)
T PRK07066 217 DDAIRFGA 224 (321)
T ss_pred HHHHHhCC
Confidence 77777664
|
|
| >TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)) | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.5e-12 Score=131.28 Aligned_cols=263 Identities=11% Similarity=0.057 Sum_probs=166.4
Q ss_pred cEEEEcccHHHHHHHHHHHHCC--------CeEEEEeC-----ChHHHHHHHHcccC---------CCCeeccCCHHHHH
Q psy9637 6 DIGLIGLAVMGQNLILNMNDHG--------FTVVAYNR-----TTAKVDSFLANEAK---------GTNIIGAHSLEELV 63 (490)
Q Consensus 6 ~IgiIGlG~MG~~lA~~L~~~G--------~~V~v~dr-----~~~~~~~l~~~g~~---------~~~i~~~~s~~e~v 63 (490)
||+|||.|.+|.+||..|+++| |+|.+|.| +++..+.+.+...+ +.+++.++++++++
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~eal 80 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEAA 80 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHHH
Confidence 6999999999999999999999 99999998 55555555433211 23455678888888
Q ss_pred hhCCCCcEEEEecCCCchHHHHHHhhcccCCCCCEEEcCCCCChHH--HHHHH-HHHHHccccccccCCCCCccccc---
Q psy9637 64 KNLKKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQD--TDRRS-KALEAKGLLYVGCGVSGGEDGAR--- 137 (490)
Q Consensus 64 ~~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~s~~~~~~--~~~~~-~~l~~~gi~~ld~~vsGg~~~a~--- 137 (490)
+. +|+||++||+ +.++++++.+.++++++.++|.++.+.... +..+. +.+.+. + -..+.+..||.-|.
T Consensus 81 ~~---ADiIIlAVPs-~~i~~vl~~l~~~l~~~~~iVs~tKGie~~~~~~~~~se~i~e~-l-~~~~~~lsGP~~A~Eva 154 (342)
T TIGR03376 81 KG---ADILVFVIPH-QFLEGICKQLKGHVKPNARAISCIKGLEVSKDGVKLLSDIIEEE-L-GIPCGVLSGANLANEVA 154 (342)
T ss_pred hc---CCEEEEECCh-HHHHHHHHHHHhhcCCCCEEEEEeCCcccCCCcCccHHHHHHHH-h-CCCeEEeeCcchHHHHH
Confidence 77 8999999999 599999999999999889999988776554 43333 333321 1 12345556666553
Q ss_pred cC-C-ccCCCC-C----cchHHHHHHHHHhhCCceee---CCC-CCCCCCCHHHHHHHH--------------HHHHHHH
Q psy9637 138 YG-P-SLMPGG-N----PAAWPALKPIFQKLNPSFET---SAP-TPKPQRDKKEFLENI--------------RQALYAS 192 (490)
Q Consensus 138 ~G-~-~im~GG-~----~~a~~~v~~ll~~l~~~~~~---~g~-~g~~~g~~a~~~Kll--------------~n~l~~~ 192 (490)
.| + .+.+++ + .+..+.++.+|+ .+++. ..+ .|. +-+-++|.+ .|+-.+.
T Consensus 155 ~~~pt~~~ia~~~~~~~~~~a~~~~~lf~---~~~frv~~s~Dv~Gv---El~galKNv~AIa~Gi~~Gl~~g~N~~aal 228 (342)
T TIGR03376 155 KEKFSETTVGYRDPADFDVDARVLKALFH---RPYFRVNVVDDVAGV---EIAGALKNVVAIAAGFVDGLGWGDNAKAAV 228 (342)
T ss_pred cCCCceEEEEeCCCcchHHHHHHHHHHhC---CCCEEEEEcCCcccc---hhhHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 33 3 444444 4 466677777776 33332 111 111 111223332 4777777
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHH--HHHHHHhcccchhhHhHhHhHHhhccCcccccccCC--hhHHHHHH------
Q psy9637 193 KIVSYAQGFMLMRQAAEIHGWKLNYG--GIALMWRGGCIIRSVFLGNIKAAFDKNPALSNLLLD--PFFKDAIH------ 262 (490)
Q Consensus 193 ~~~~~aE~~~la~~a~~~~~~Gld~~--~v~~i~~~g~~~~s~~l~~i~~~~~~~~~~~~~~~~--~~f~~~l~------ 262 (490)
...++.|+..++++. |-+++ +++..-.-| ++.-.+.. .+|..+...+-. -.+...++
T Consensus 229 itrgl~Em~~l~~~~------g~~~~~~T~~gl~G~G-----DL~~Tc~s--sRN~~~G~~l~~~g~~~~~~~~~~~~~~ 295 (342)
T TIGR03376 229 MRRGLLEMIKFARMF------FPTGEVTFTFESCGVA-----DLITTCLG--GRNFKVGRAFAKTGKSLEELEKELLNGQ 295 (342)
T ss_pred HHHHHHHHHHHHHHh------CCCCCCCcccccchhh-----hhhheeec--CccHHHHHHHHhcCCCHHHHHHhhcCCc
Confidence 888888999999988 76655 555443222 12222111 233333222211 11111111
Q ss_pred --HHHHHHHHHHHHHHHcCCC--chHHHHHHHHHH
Q psy9637 263 --ATQSSWRAVVSQSALLGIP--TPAFATALAFYD 293 (490)
Q Consensus 263 --~~~kDl~~~~~~A~~~gv~--~P~~~aa~~~~~ 293 (490)
......+.+.+.+++.++. +|+++++++++.
T Consensus 296 ~vEG~~t~~~~~~l~~~~~i~~~~Pi~~~vy~il~ 330 (342)
T TIGR03376 296 SLQGVATAKEVHELLKNKNKDDEFPLFEAVYQILY 330 (342)
T ss_pred EEeeHHHHHHHHHHHHHcCCCcCCCHHHHHHHHHh
Confidence 1256677888999999999 999999998874
|
Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria. |
| >PRK12491 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.46 E-value=9.5e-12 Score=123.60 Aligned_cols=201 Identities=9% Similarity=0.085 Sum_probs=128.5
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC----eEEEEeCChHHHHHHHH-cccCCCCeeccCCHHHHHhhCCCCcEEEEecCCC
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGF----TVVAYNRTTAKVDSFLA-NEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAG 79 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~----~V~v~dr~~~~~~~l~~-~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~ 79 (490)
+||||||+|+||.+|+.+|.++|+ +|++|||++++.+.+.+ .+. ..+.+..+++.. +|+||+|||+
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g~-----~~~~~~~e~~~~---aDiIiLavkP- 73 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYGI-----TITTNNNEVANS---ADILILSIKP- 73 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcCc-----EEeCCcHHHHhh---CCEEEEEeCh-
Confidence 589999999999999999999885 69999999999888775 332 356788888876 8999999997
Q ss_pred chHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccc-ccccCCCCCccccccCCc-cCCCC--CcchHHHHH
Q psy9637 80 SAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLL-YVGCGVSGGEDGARYGPS-LMPGG--NPAAWPALK 155 (490)
Q Consensus 80 ~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~-~ld~~vsGg~~~a~~G~~-im~GG--~~~a~~~v~ 155 (490)
..+.++++++.+.++++.+||+.-.+...+..+ +.+.. ..+ .--+|- .+.....|.+ +..+. +++..+.++
T Consensus 74 ~~~~~vl~~l~~~~~~~~lvISi~AGi~i~~l~--~~l~~-~~~vvR~MPN--~~~~vg~g~t~~~~~~~~~~~~~~~v~ 148 (272)
T PRK12491 74 DLYSSVINQIKDQIKNDVIVVTIAAGKSIKSTE--NEFDR-KLKVIRVMPN--TPVLVGEGMSALCFNEMVTEKDIKEVL 148 (272)
T ss_pred HHHHHHHHHHHHhhcCCcEEEEeCCCCcHHHHH--HhcCC-CCcEEEECCC--hHHHHcCceEEEEeCCCCCHHHHHHHH
Confidence 699999999999888889999987765433332 22211 111 111232 1122234542 33322 345667899
Q ss_pred HHHHhhCCceeeCCCCCCCCCCHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhcccchhh
Q psy9637 156 PIFQKLNPSFETSAPTPKPQRDKKEFLENIRQALYA---SKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGGCIIRS 232 (490)
Q Consensus 156 ~ll~~l~~~~~~~g~~g~~~g~~a~~~Kll~n~l~~---~~~~~~aE~~~la~~a~~~~~~Gld~~~v~~i~~~g~~~~s 232 (490)
.+|+.+|..+.. .+. .++.+ -++.+ +.+..+.|++.-+-.. +|++.++..++......+.+
T Consensus 149 ~lf~~~G~~~~~-~E~---------~~d~~-talsgsgPAf~~~~~eal~~a~v~-----~Gl~~~~A~~l~~~t~~G~a 212 (272)
T PRK12491 149 NIFNIFGQTEVV-NEK---------LMDVV-TSISGSSPAYVYMFIEAMADAAVL-----GGMPRKQAYKFAAQAVLGSA 212 (272)
T ss_pred HHHHcCCCEEEE-cHH---------HhhhH-HHhccCcHHHHHHHHHHHHHHHHH-----cCCCHHHHHHHHHHHHHHHH
Confidence 999999986543 111 11111 11111 2233333433332222 39999998888765544444
Q ss_pred HhH
Q psy9637 233 VFL 235 (490)
Q Consensus 233 ~~l 235 (490)
.++
T Consensus 213 ~ll 215 (272)
T PRK12491 213 KMV 215 (272)
T ss_pred HHH
Confidence 444
|
|
| >PLN02256 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.46 E-value=9.2e-12 Score=125.45 Aligned_cols=158 Identities=16% Similarity=0.183 Sum_probs=113.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
+++|+|||+|.||..+|..|.+.|++|++||+++.. +...+.+. ....+.++++.. .+|+||+|+|.. .+.
T Consensus 36 ~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~~-~~a~~~gv-----~~~~~~~e~~~~--~aDvVilavp~~-~~~ 106 (304)
T PLN02256 36 KLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDYS-DIAAELGV-----SFFRDPDDFCEE--HPDVVLLCTSIL-STE 106 (304)
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccHH-HHHHHcCC-----eeeCCHHHHhhC--CCCEEEEecCHH-HHH
Confidence 468999999999999999999999999999999643 33333332 246777777531 389999999985 889
Q ss_pred HHHHhh-cccCCCCCEEEcCCCCChHHHHHHHHHHHHcccccccc-CCCCCccc--cccCC-ccCC-------CCCcchH
Q psy9637 84 DFIDKL-VPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGC-GVSGGEDG--ARYGP-SLMP-------GGNPAAW 151 (490)
Q Consensus 84 ~vl~~l-~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~-~vsGg~~~--a~~G~-~im~-------GG~~~a~ 151 (490)
+++.++ .+.++++.+|+|.+++...... ..+.....+..|+.+ |+.|...+ ...+. .+.. +.+++++
T Consensus 107 ~vl~~l~~~~l~~~~iviDv~SvK~~~~~-~~~~~l~~~~~~V~~HPmaG~e~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 185 (304)
T PLN02256 107 AVLRSLPLQRLKRSTLFVDVLSVKEFPKN-LLLQVLPEEFDILCTHPMFGPESGKGGWAGLPFVYDKVRIGDEGEREARC 185 (304)
T ss_pred HHHHhhhhhccCCCCEEEecCCchHHHHH-HHHHhCCCCCeEEecCCCCCCCCCccccCCCeEEEecceecCCCCCHHHH
Confidence 999888 6778899999999996533333 333322335667766 77666543 23344 2222 2256788
Q ss_pred HHHHHHHHhhCCceeeCCCC
Q psy9637 152 PALKPIFQKLNPSFETSAPT 171 (490)
Q Consensus 152 ~~v~~ll~~l~~~~~~~g~~ 171 (490)
+.++.+++.+|++++.+.+.
T Consensus 186 ~~l~~l~~~lGa~v~~~~~e 205 (304)
T PLN02256 186 ERFLDIFEEEGCRMVEMSCE 205 (304)
T ss_pred HHHHHHHHHCCCEEEEeCHH
Confidence 99999999999998877653
|
|
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.45 E-value=9.6e-13 Score=145.30 Aligned_cols=156 Identities=17% Similarity=0.199 Sum_probs=117.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
+++|||||+|.||..+|++|.+.|++|++|||+... +...+.|. ..+.++++++.. .+|+||+|||. ..+.
T Consensus 369 ~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~~-~~a~~~Gv-----~~~~~~~el~~~--~aDvVILavP~-~~~~ 439 (667)
T PLN02712 369 KLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYS-DEAQKLGV-----SYFSDADDLCEE--HPEVILLCTSI-LSTE 439 (667)
T ss_pred CCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChHH-HHHHHcCC-----eEeCCHHHHHhc--CCCEEEECCCh-HHHH
Confidence 479999999999999999999999999999999653 44443332 246788887652 27999999997 5889
Q ss_pred HHHHhhcc-cCCCCCEEEcCCCCChHHHHHHHHHHHHcccccc-ccCCCCCccccccC---Cc-----cCCCCCcchHHH
Q psy9637 84 DFIDKLVP-LLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYV-GCGVSGGEDGARYG---PS-----LMPGGNPAAWPA 153 (490)
Q Consensus 84 ~vl~~l~~-~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~l-d~~vsGg~~~a~~G---~~-----im~GG~~~a~~~ 153 (490)
++++++.+ .+++|.+|+|++++. ....+..+.+...+..|+ ..|++|...+ ..| .. .+++++.+..++
T Consensus 440 ~vi~~l~~~~lk~g~ivvDv~SvK-~~~~~~~~~~l~~~~~~v~~HPm~G~e~~-~~G~~~~~~lf~~~~v~~~~~~~~~ 517 (667)
T PLN02712 440 KVLKSLPFQRLKRSTLFVDVLSVK-EFPRNLFLQHLPQDFDILCTHPMFGPESG-KNGWNNLAFVFDKVRIGSDDRRVSR 517 (667)
T ss_pred HHHHHHHHhcCCCCcEEEECCCcc-HHHHHHHHHhccCCCceEeeCCCCCcccc-ccchhhhhhhccCcEeCCCcchHHH
Confidence 99988875 678899999999987 444555555556678888 7799988765 233 12 345666666555
Q ss_pred H---HHHHHhhCCceeeCCC
Q psy9637 154 L---KPIFQKLNPSFETSAP 170 (490)
Q Consensus 154 v---~~ll~~l~~~~~~~g~ 170 (490)
+ ..+++.+|++++.+.+
T Consensus 518 ~~~l~~l~~~lGa~vv~ms~ 537 (667)
T PLN02712 518 CDSFLDIFAREGCRMVEMSC 537 (667)
T ss_pred HHHHHHHHHHcCCEEEEeCH
Confidence 5 5889999998887665
|
|
| >PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.7e-12 Score=131.45 Aligned_cols=179 Identities=13% Similarity=0.107 Sum_probs=137.5
Q ss_pred HHHHHHHHHHHCCCeEEEEeCChHH-------HHH-----------HHHcccC--------CCCeeccCC--HHHHHhhC
Q psy9637 15 MGQNLILNMNDHGFTVVAYNRTTAK-------VDS-----------FLANEAK--------GTNIIGAHS--LEELVKNL 66 (490)
Q Consensus 15 MG~~lA~~L~~~G~~V~v~dr~~~~-------~~~-----------l~~~g~~--------~~~i~~~~s--~~e~v~~l 66 (490)
||..||..++.+|++|++||++++. ++. +.+.+.. ..+++.+.+ +.++++.
T Consensus 1 MG~giA~~~a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~~- 79 (314)
T PRK08269 1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALAD- 79 (314)
T ss_pred CcHHHHHHHHhCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhcc-
Confidence 8999999999999999999999842 111 1122211 124555544 5566666
Q ss_pred CCCcEEEEecCCCchHHHHH-HhhcccCCCCCEEEcCCCCChHHHHHHHHHH----HHccccccccC-------CCCCcc
Q psy9637 67 KKPRRVMMLVKAGSAVDDFI-DKLVPLLEKGDIIIDGGNSEYQDTDRRSKAL----EAKGLLYVGCG-------VSGGED 134 (490)
Q Consensus 67 ~~~dvIil~vp~~~~v~~vl-~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l----~~~gi~~ld~~-------vsGg~~ 134 (490)
+|+||.|||.+..++..+ .++.+.++++.|| +||+++....++.+.+ +..|+||++.| |++|+
T Consensus 80 --aD~ViEav~E~~~~K~~~f~~l~~~~~~~~il--aSntS~~~~~~la~~~~~p~r~~g~Hf~~Pp~~~~lvEVv~g~- 154 (314)
T PRK08269 80 --ADLVFEAVPEVLDAKREALRWLGRHVDADAII--ASTTSTFLVTDLQRHVAHPERFLNAHWLNPAYLMPLVEVSPSD- 154 (314)
T ss_pred --CCEEEECCcCCHHHHHHHHHHHHhhCCCCcEE--EEccccCCHHHHHhhcCCcccEEEEecCCccccCceEEEeCCC-
Confidence 999999999999888766 6777888888877 5666666666676666 33589999999 77766
Q ss_pred ccccCCccCCCCCcchHHHHHHHHHhhCCceeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q psy9637 135 GARYGPSLMPGGNPAAWPALKPIFQKLNPSFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWK 214 (490)
Q Consensus 135 ~a~~G~~im~GG~~~a~~~v~~ll~~l~~~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~G 214 (490)
++++++++++.++++.++..++++++.+ | +.+.......++|++.++++. +
T Consensus 155 ----------~t~~e~~~~~~~ll~~lGk~~v~v~d~~---G----------fi~nri~~~~l~EAl~l~e~g------~ 205 (314)
T PRK08269 155 ----------ATDPAVVDRLAALLERIGKVPVVCGPSP---G----------YIVPRIQALAMNEAARMVEEG------V 205 (314)
T ss_pred ----------CCCHHHHHHHHHHHHHcCCcEEEecCCC---C----------cchHHHHHHHHHHHHHHHHhC------C
Confidence 5688999999999999999999988753 1 245677788999999999998 8
Q ss_pred CCHHHHHHHHhccc
Q psy9637 215 LNYGGIALMWRGGC 228 (490)
Q Consensus 215 ld~~~v~~i~~~g~ 228 (490)
++++++-++++.|.
T Consensus 206 ~~~e~iD~a~~~g~ 219 (314)
T PRK08269 206 ASAEDIDKAIRTGF 219 (314)
T ss_pred CCHHHHHHHHHhCC
Confidence 99999999987554
|
|
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.44 E-value=6.8e-12 Score=125.74 Aligned_cols=192 Identities=16% Similarity=0.220 Sum_probs=127.0
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcc------------cC--------CCCeeccCCHHHHH
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANE------------AK--------GTNIIGAHSLEELV 63 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g------------~~--------~~~i~~~~s~~e~v 63 (490)
+++|+|||+|.||..||..|+++|++|++||++++.+++..+.. .. ..++..++++++++
T Consensus 3 ~~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a~ 82 (287)
T PRK08293 3 IKNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEAV 82 (287)
T ss_pred ccEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHHh
Confidence 46899999999999999999999999999999998776654320 00 12455678888877
Q ss_pred hhCCCCcEEEEecCCCchH-HHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHH----ccccccccCCCCCcccccc
Q psy9637 64 KNLKKPRRVMMLVKAGSAV-DDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEA----KGLLYVGCGVSGGEDGARY 138 (490)
Q Consensus 64 ~~l~~~dvIil~vp~~~~v-~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~----~gi~~ld~~vsGg~~~a~~ 138 (490)
+. +|+||.|+|....+ ..+++++.+.++++.+|++.+++.+.. +..+.+.. .|.||.+.+ . .
T Consensus 83 ~~---aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~~~~--~~~~~~~~~~r~vg~Hf~~p~-----~---~ 149 (287)
T PRK08293 83 KD---ADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTLLPS--QFAEATGRPEKFLALHFANEI-----W---K 149 (287)
T ss_pred cC---CCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccCCHH--HHHhhcCCcccEEEEcCCCCC-----C---c
Confidence 66 99999999986544 566788888888888886555544332 22222221 244553332 1 2
Q ss_pred CC--ccC--CCCCcchHHHHHHHHHhhCCceeeCC-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q psy9637 139 GP--SLM--PGGNPAAWPALKPIFQKLNPSFETSA-PTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGW 213 (490)
Q Consensus 139 G~--~im--~GG~~~a~~~v~~ll~~l~~~~~~~g-~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~ 213 (490)
.+ -++ .+.++++++++.++++.++...+.+. +.. | ..+. -.....++|++.+.+.-
T Consensus 150 ~~lvevv~~~~t~~~~~~~~~~~~~~~Gk~pv~v~~d~p---g---fi~n-------Ri~~~~~~ea~~l~~~g------ 210 (287)
T PRK08293 150 NNTAEIMGHPGTDPEVFDTVVAFAKAIGMVPIVLKKEQP---G---YILN-------SLLVPFLSAALALWAKG------ 210 (287)
T ss_pred CCeEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEecCCCC---C---HhHH-------HHHHHHHHHHHHHHHcC------
Confidence 22 233 34678999999999999998876664 321 1 1222 12344567777776662
Q ss_pred CCCHHHHHHHHhcc
Q psy9637 214 KLNYGGIALMWRGG 227 (490)
Q Consensus 214 Gld~~~v~~i~~~g 227 (490)
-.+++++=.+++.+
T Consensus 211 ~a~~~~iD~a~~~~ 224 (287)
T PRK08293 211 VADPETIDKTWMIA 224 (287)
T ss_pred CCCHHHHHHHHHhc
Confidence 35677776666433
|
|
| >PRK05708 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=6.9e-12 Score=126.77 Aligned_cols=266 Identities=13% Similarity=0.081 Sum_probs=153.0
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcc-cC----CCCe--ec-cCCHHHHHhhCCCCcEEEEe
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANE-AK----GTNI--IG-AHSLEELVKNLKKPRRVMML 75 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g-~~----~~~i--~~-~~s~~e~v~~l~~~dvIil~ 75 (490)
.|||+|||+|.||..+|..|.++|++|++++|+++.++.+.+.+ .. +... .. ..+. +.++..|+||+|
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~----~~~~~~D~viv~ 77 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETA----DAAEPIHRLLLA 77 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCc----ccccccCEEEEE
Confidence 36899999999999999999999999999999988888877542 21 1100 00 1111 122347999999
Q ss_pred cCCCchHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHc----cccccccCCCCCccccccCC-ccCCCC-Ccc
Q psy9637 76 VKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAK----GLLYVGCGVSGGEDGARYGP-SLMPGG-NPA 149 (490)
Q Consensus 76 vp~~~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~----gi~~ld~~vsGg~~~a~~G~-~im~GG-~~~ 149 (490)
|+.. ++++++..+.+.+.++.+||-..|+.... ....+.+... |+.++.+..-+.-.-...|. .+.+|. +.+
T Consensus 78 vK~~-~~~~al~~l~~~l~~~t~vv~lQNGv~~~-e~l~~~~~~~~v~~g~~~~ga~~~~pg~v~~~~~g~~~~G~~~~~ 155 (305)
T PRK05708 78 CKAY-DAEPAVASLAHRLAPGAELLLLQNGLGSQ-DAVAARVPHARCIFASSTEGAFRDGDWRVVFAGHGFTWLGDPRNP 155 (305)
T ss_pred CCHH-hHHHHHHHHHhhCCCCCEEEEEeCCCCCH-HHHHHhCCCCcEEEEEeeeceecCCCCEEEEeceEEEEEcCCCCc
Confidence 9995 78899999999999999999999987432 2222222211 33333332222111111222 222332 224
Q ss_pred hHHHHHHHHHhhCCceeeCCCCCCCCCCHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHh
Q psy9637 150 AWPALKPIFQKLNPSFETSAPTPKPQRDKKEFLENIRQALYAS------------------KIVSYAQGFMLMRQAAEIH 211 (490)
Q Consensus 150 a~~~v~~ll~~l~~~~~~~g~~g~~~g~~a~~~Kll~n~l~~~------------------~~~~~aE~~~la~~a~~~~ 211 (490)
..+++.++|..-+..+...... ....+.|++.|+.... ....+.|...++++.
T Consensus 156 ~~~~l~~~l~~ag~~~~~~~di-----~~~~W~Kl~~N~~~N~ltal~~~~~g~l~~~~~~~~~l~~E~~~va~a~---- 226 (305)
T PRK05708 156 TAPAWLDDLREAGIPHEWTVDI-----LTRLWRKLALNCAINPLTVLHDCRNGGLLEHAQEVAALCAELSELLRRC---- 226 (305)
T ss_pred chHHHHHHHHhcCCCCccCHHH-----HHHHHHHHHHHccccHhHHhhCCCCcchhcCHHHHHHHHHHHHHHHHHc----
Confidence 4566677777655433222111 2456777776663322 233446666666665
Q ss_pred CCCCCHHHHHHHH----hcccchhhHhHhHhHHhhccCcccccccCChhHHHHHHHHHHHHHHHHHHHHHcCCCchHHHH
Q psy9637 212 GWKLNYGGIALMW----RGGCIIRSVFLGNIKAAFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSALLGIPTPAFAT 287 (490)
Q Consensus 212 ~~Gld~~~v~~i~----~~g~~~~s~~l~~i~~~~~~~~~~~~~~~~~~f~~~l~~~~kDl~~~~~~A~~~gv~~P~~~a 287 (490)
++.++...+.+.+ ....-..|.|++++... . + .+++.. ...++++|+++|+|+|..+.
T Consensus 227 G~~~~~~~~~~~~~~~~~~~~~~~sSM~qD~~~g----R--------~---tEid~i---~G~vvr~a~~~Gv~~P~~~~ 288 (305)
T PRK05708 227 GQPAAAANLHEEVQRVIQATAANYSSMYQDVRAG----R--------R---TEISYL---LGYACRAADRHGLPLPRLQH 288 (305)
T ss_pred CCCccHHHHHHHHHHHHHhccCCCcHHHHHHHcC----C--------c---eeehhh---hhHHHHHHHHcCCCCchHHH
Confidence 3333433333322 11111122222222110 0 0 011111 35689999999999999999
Q ss_pred HHHHHHH-HHhCCChh
Q psy9637 288 ALAFYDG-YRSKRLPA 302 (490)
Q Consensus 288 a~~~~~~-~~~~g~~~ 302 (490)
.++..+. .+++|+|.
T Consensus 289 l~~~v~~~~~~~~~~~ 304 (305)
T PRK05708 289 LQQRLVAHLRARGLPT 304 (305)
T ss_pred HHHHHHHHHHhcCCCC
Confidence 9987775 55677774
|
|
| >TIGR01915 npdG NADPH-dependent F420 reductase | Back alignment and domain information |
|---|
Probab=99.37 E-value=4.1e-12 Score=122.28 Aligned_cols=160 Identities=16% Similarity=0.189 Sum_probs=108.6
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccC-----CC--CeeccCCHHHHHhhCCCCcEEEEec
Q psy9637 5 GDIGLIG-LAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAK-----GT--NIIGAHSLEELVKNLKKPRRVMMLV 76 (490)
Q Consensus 5 ~~IgiIG-lG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~-----~~--~i~~~~s~~e~v~~l~~~dvIil~v 76 (490)
|||+||| +|.||..|+..|+++||+|++|+|++++.+.+...... +. ++ ...+..+.+.. +|+||+++
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~-~~~~~~ea~~~---aDvVilav 76 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEELGHGGSDIKV-TGADNAEAAKR---ADVVILAV 76 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhhccccCCCceE-EEeChHHHHhc---CCEEEEEC
Confidence 5899997 89999999999999999999999999998877653210 00 11 12355666665 89999999
Q ss_pred CCCchHHHHHHhhcccCCCCCEEEcCCCCChHH---------------HHHHHHHHHH-----ccccccccCCCCCcccc
Q psy9637 77 KAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQD---------------TDRRSKALEA-----KGLLYVGCGVSGGEDGA 136 (490)
Q Consensus 77 p~~~~v~~vl~~l~~~l~~g~iiId~s~~~~~~---------------~~~~~~~l~~-----~gi~~ld~~vsGg~~~a 136 (490)
|.. .+.+++.++.+.+. +++|||++|....+ ++...+.+.. +.+..+.+.+..+. ..
T Consensus 77 p~~-~~~~~l~~l~~~l~-~~vvI~~~ngi~~~~~~~~~~~~~~~~s~~e~l~~~~p~~~~VVka~~~~~a~~~~~~-~~ 153 (219)
T TIGR01915 77 PWD-HVLKTLESLRDELS-GKLVISPVVPLASDGGKGARYLPPEEGSAAEQAAALLPETSRVVAAFHNLSAVLLQDV-DD 153 (219)
T ss_pred CHH-HHHHHHHHHHHhcc-CCEEEEeccCceecCCCCceecCCCCCcHHHHHHHhCCCCCeEeeccccCCHHHhcCC-CC
Confidence 994 78888888877665 58999999876531 1222222221 12223333333332 22
Q ss_pred ccCC-ccCCCCCcchHHHHHHHHHhh-CCceeeCCCC
Q psy9637 137 RYGP-SLMPGGNPAAWPALKPIFQKL-NPSFETSAPT 171 (490)
Q Consensus 137 ~~G~-~im~GG~~~a~~~v~~ll~~l-~~~~~~~g~~ 171 (490)
..+. .+++|-|+++.+.+..+.+.+ |-..+..|+.
T Consensus 154 ~~~~~~~v~Gdd~~ak~~v~~L~~~~~G~~~vd~G~l 190 (219)
T TIGR01915 154 EVDCDVLVCGDDEEAKEVVAELAGRIDGLRALDAGPL 190 (219)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHhcCCCCcccCCch
Confidence 2234 444555567788899999999 8887777774
|
This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase. |
| >COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.36 E-value=6.4e-11 Score=119.52 Aligned_cols=260 Identities=19% Similarity=0.210 Sum_probs=160.9
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccC---CCC-----eeccCCHHHHHhhCCCCcEEEEec
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAK---GTN-----IIGAHSLEELVKNLKKPRRVMMLV 76 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~---~~~-----i~~~~s~~e~v~~l~~~dvIil~v 76 (490)
|||.|+|+|.||..++..|+++|++|+++.|++. ++++.+.|.. ... ...+.+.+ .+..+|+||++|
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~-~~~l~~~GL~i~~~~~~~~~~~~~~~~~~----~~~~~Dlviv~v 75 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRR-LEALKKKGLRIEDEGGNFTTPVVAATDAE----ALGPADLVIVTV 75 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH-HHHHHhCCeEEecCCCccccccccccChh----hcCCCCEEEEEe
Confidence 5899999999999999999999999999999866 8888886543 111 11112222 233489999999
Q ss_pred CCCchHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHc----cccccccCCCCCcc--ccccCC---ccCCCCC
Q psy9637 77 KAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAK----GLLYVGCGVSGGED--GARYGP---SLMPGGN 147 (490)
Q Consensus 77 p~~~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~----gi~~ld~~vsGg~~--~a~~G~---~im~GG~ 147 (490)
++. ++++++..+.+.+.+...|+-..|+..... ++.+..... |+.+..+--.|... ....|. ..+.|++
T Consensus 76 Ka~-q~~~al~~l~~~~~~~t~vl~lqNG~g~~e-~l~~~~~~~~il~G~~~~~a~~~~~g~v~~~g~g~~~ig~~~~~~ 153 (307)
T COG1893 76 KAY-QLEEALPSLAPLLGPNTVVLFLQNGLGHEE-ELRKILPKETVLGGVTTHGAVREGPGHVVHTGLGDTVIGELRGGR 153 (307)
T ss_pred ccc-cHHHHHHHhhhcCCCCcEEEEEeCCCcHHH-HHHHhCCcceEEEEEeeeeeEecCCceEEEecCCcEEEccCCCCc
Confidence 995 999999999999999999998888874333 333333322 34343333222111 112233 3355666
Q ss_pred cchHHHHHHHHHhhCCceeeCCCCCCCCCCHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHH
Q psy9637 148 PAAWPALKPIFQKLNPSFETSAPTPKPQRDKKEFLENIRQALYA---------------------SKIVSYAQGFMLMRQ 206 (490)
Q Consensus 148 ~~a~~~v~~ll~~l~~~~~~~g~~g~~~g~~a~~~Kll~n~l~~---------------------~~~~~~aE~~~la~~ 206 (490)
++.++.+.++|+.-+..+...... ....+.|++.|+-.. .....+.|....+.+
T Consensus 154 ~~~~~~i~~~~~~a~~~~~~~~di-----~~~~w~Kl~~N~~inpltall~~~~g~l~~~~~~~~l~~~~~~E~~~v~~~ 228 (307)
T COG1893 154 DELVKALAELFKEAGLEVELHPDI-----LAAIWRKLVVNAAINPLTALLDCNNGELLENPEARALIRALVAEVVAVARA 228 (307)
T ss_pred hHHHHHHHHHHHhCCCCeEEcHHH-----HHHHHHHHHhhhccchhhhhhcCCchHHhcChhHHHHHHHHHHHHHHHHHh
Confidence 678888888887777655432221 123445555444333 344455666666666
Q ss_pred HHHHhCCCCCHH---HHHHHHhcc-cchhhHhHhHhHHhhccCcccccccCChhHHHHHHHHHHHHHHHHHHHHHcCCCc
Q psy9637 207 AAEIHGWKLNYG---GIALMWRGG-CIIRSVFLGNIKAAFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSALLGIPT 282 (490)
Q Consensus 207 a~~~~~~Gld~~---~v~~i~~~g-~~~~s~~l~~i~~~~~~~~~~~~~~~~~~f~~~l~~~~kDl~~~~~~A~~~gv~~ 282 (490)
. +..++.+ .+..+.+.. .--+|.|++++... .+. +++.. ...+++.|+++|+++
T Consensus 229 ~----g~~~~~~~~~~v~~~~~~~~~~~~sSM~qDl~~g------------r~t---Eid~i---~G~vv~~a~~~gi~~ 286 (307)
T COG1893 229 E----GVELPEEVVERVLAVIRATDAENYSSMLQDLEKG------------RPT---EIDAI---NGAVVRLAKKHGLAT 286 (307)
T ss_pred c----cCCCCHHHHHHHHHHHHhcccccCchHHHHHHcC------------Ccc---cHHHH---hhHHHHHHHHhCCCC
Confidence 6 2336663 333333332 22233333332211 000 11111 356899999999999
Q ss_pred hHHHHHHHHHHHHHhC
Q psy9637 283 PAFATALAFYDGYRSK 298 (490)
Q Consensus 283 P~~~aa~~~~~~~~~~ 298 (490)
|..+..+++.+.....
T Consensus 287 P~~~~L~~lvk~~e~~ 302 (307)
T COG1893 287 PVNDTLYALLKAKEAE 302 (307)
T ss_pred cHHHHHHHHHHHHHHh
Confidence 9999999999877653
|
|
| >PRK08818 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=2e-11 Score=125.49 Aligned_cols=147 Identities=14% Similarity=0.186 Sum_probs=112.0
Q ss_pred CCCCCcEEEEcc-cHHHHHHHHHHHH-CCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCC
Q psy9637 1 MAAKGDIGLIGL-AVMGQNLILNMND-HGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKA 78 (490)
Q Consensus 1 M~~~~~IgiIGl-G~MG~~lA~~L~~-~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~ 78 (490)
|-..++|+|||+ |.||..+|+.|.+ .|++|++||++.+ ...++.+.+.+ +|+||+|+|.
T Consensus 1 ~~~~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~----------------~~~~~~~~v~~---aDlVilavPv 61 (370)
T PRK08818 1 MIAQPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADP----------------GSLDPATLLQR---ADVLIFSAPI 61 (370)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCcc----------------ccCCHHHHhcC---CCEEEEeCCH
Confidence 555689999999 9999999999996 4899999998511 24567777766 9999999999
Q ss_pred CchHHHHHHhhccc---CCCCCEEEcCCCCChHHHHHHHHHHHHcccccccc-CCCCCcc-ccccCC-ccCC-CCCcchH
Q psy9637 79 GSAVDDFIDKLVPL---LEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGC-GVSGGED-GARYGP-SLMP-GGNPAAW 151 (490)
Q Consensus 79 ~~~v~~vl~~l~~~---l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~-~vsGg~~-~a~~G~-~im~-GG~~~a~ 151 (490)
. .+.+++.++.+. ++++.+|+|.+++....... +...+..|+.. |+.|++. +...|. .+++ +...+..
T Consensus 62 ~-~~~~~l~~l~~~~~~l~~~~iVtDVgSvK~~i~~~----~~~~~~~fVG~HPMaG~E~s~lf~g~~~iltp~~~~~~~ 136 (370)
T PRK08818 62 R-HTAALIEEYVALAGGRAAGQLWLDVTSIKQAPVAA----MLASQAEVVGLHPMTAPPKSPTLKGRVMVVCEARLQHWS 136 (370)
T ss_pred H-HHHHHHHHHhhhhcCCCCCeEEEECCCCcHHHHHH----HHhcCCCEEeeCCCCCCCCCcccCCCeEEEeCCCchhHH
Confidence 5 889999988875 79999999999987332222 23445678887 7777753 445566 4544 4444557
Q ss_pred HHHHHHHHhhCCceeeCCCC
Q psy9637 152 PALKPIFQKLNPSFETSAPT 171 (490)
Q Consensus 152 ~~v~~ll~~l~~~~~~~g~~ 171 (490)
+.++.+++.+|++++.+.+.
T Consensus 137 ~~v~~l~~~~Ga~v~~~~ae 156 (370)
T PRK08818 137 PWVQSLCSALQAECVYATPE 156 (370)
T ss_pred HHHHHHHHHcCCEEEEcCHH
Confidence 88999999999998877663
|
|
| >PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.7e-12 Score=106.10 Aligned_cols=90 Identities=23% Similarity=0.398 Sum_probs=76.2
Q ss_pred cEEEEcccHHHHHHHHHHHHCC---CeEEE-EeCChHHHHHHHHcccCCCCeeccC-CHHHHHhhCCCCcEEEEecCCCc
Q psy9637 6 DIGLIGLAVMGQNLILNMNDHG---FTVVA-YNRTTAKVDSFLANEAKGTNIIGAH-SLEELVKNLKKPRRVMMLVKAGS 80 (490)
Q Consensus 6 ~IgiIGlG~MG~~lA~~L~~~G---~~V~v-~dr~~~~~~~l~~~g~~~~~i~~~~-s~~e~v~~l~~~dvIil~vp~~~ 80 (490)
||||||.|+||.+|++.|.++| ++|.+ ++|++++.+++.++.. +.... +..++++. +|+||+|||+ .
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~----~~~~~~~~~~~~~~---advvilav~p-~ 72 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYG----VQATADDNEEAAQE---ADVVILAVKP-Q 72 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCT----TEEESEEHHHHHHH---TSEEEE-S-G-G
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhc----cccccCChHHhhcc---CCEEEEEECH-H
Confidence 6999999999999999999999 99995 5999999999877643 12344 79999987 9999999999 5
Q ss_pred hHHHHHHhhcccCCCCCEEEcCCC
Q psy9637 81 AVDDFIDKLVPLLEKGDIIIDGGN 104 (490)
Q Consensus 81 ~v~~vl~~l~~~l~~g~iiId~s~ 104 (490)
.+.+++.++ +.+.++++|||..+
T Consensus 73 ~~~~v~~~i-~~~~~~~~vis~~a 95 (96)
T PF03807_consen 73 QLPEVLSEI-PHLLKGKLVISIAA 95 (96)
T ss_dssp GHHHHHHHH-HHHHTTSEEEEEST
T ss_pred HHHHHHHHH-hhccCCCEEEEeCC
Confidence 899999999 77889999999765
|
It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D .... |
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.35 E-value=7.6e-11 Score=130.33 Aligned_cols=157 Identities=13% Similarity=0.139 Sum_probs=110.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
+++|||||+|.||..+|+.|.++|++|++|||+... +...+.+. ..+.++.+++.. .+|+||+|||. ..+.
T Consensus 52 ~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~-~~A~~~Gv-----~~~~d~~e~~~~--~aDvViLavP~-~~~~ 122 (667)
T PLN02712 52 QLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHS-LAARSLGV-----SFFLDPHDLCER--HPDVILLCTSI-ISTE 122 (667)
T ss_pred CCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHHHcCC-----EEeCCHHHHhhc--CCCEEEEcCCH-HHHH
Confidence 478999999999999999999999999999998554 33333332 346788886532 28999999998 5889
Q ss_pred HHHHhhc-ccCCCCCEEEcCCCCChHHHHHHHHHHHHcccccccc-CCCCCccc--cccCC-ccCCC---CC-cc---hH
Q psy9637 84 DFIDKLV-PLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGC-GVSGGEDG--ARYGP-SLMPG---GN-PA---AW 151 (490)
Q Consensus 84 ~vl~~l~-~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~-~vsGg~~~--a~~G~-~im~G---G~-~~---a~ 151 (490)
++++++. +.++++.+|+|++++.. ...+..+.....+..|+.. |+.|.... ...+. .++.+ ++ .. .+
T Consensus 123 ~vl~~l~~~~l~~g~iVvDv~SvK~-~~~~~l~~~l~~~~~~v~~HPMaG~e~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 201 (667)
T PLN02712 123 NVLKSLPLQRLKRNTLFVDVLSVKE-FAKNLLLDYLPEDFDIICSHPMFGPQSAKHGWDGLRFVYEKVRIGNEELRVSRC 201 (667)
T ss_pred HHHHhhhhhcCCCCeEEEECCCCcH-HHHHHHHHhcCCCCeEEeeCCcCCCccccchhccCcEEEeeccCCCccccHHHH
Confidence 9998885 67889999999998763 3333333333456777766 77766521 12233 33332 33 22 35
Q ss_pred HHHHHHHHhhCCceeeCCC
Q psy9637 152 PALKPIFQKLNPSFETSAP 170 (490)
Q Consensus 152 ~~v~~ll~~l~~~~~~~g~ 170 (490)
+.++.+++.+|++++.+.+
T Consensus 202 ~~l~~l~~~lGa~v~~ms~ 220 (667)
T PLN02712 202 KSFLEVFEREGCKMVEMSC 220 (667)
T ss_pred HHHHHHHHHcCCEEEEeCH
Confidence 5667999999998887655
|
|
| >PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=6.3e-11 Score=133.61 Aligned_cols=159 Identities=20% Similarity=0.312 Sum_probs=118.8
Q ss_pred CcEEEEcccHHHHHHHHHHHHCC--CeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHG--FTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAV 82 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G--~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v 82 (490)
.+|+|||+|.||..+++.|.++| ++|++||+++++.+.+.+.+.. .....++.++++. +|+||+|||.. .+
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g~~---~~~~~~~~~~~~~---aDvVilavp~~-~~ 76 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSLGVI---DRGEEDLAEAVSG---ADVIVLAVPVL-AM 76 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHCCCC---CcccCCHHHHhcC---CCEEEECCCHH-HH
Confidence 58999999999999999999999 4899999999988877665432 1124566666665 89999999984 88
Q ss_pred HHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccccc-ccCCCCCccc--------cccCC-c-c--CCCCCcc
Q psy9637 83 DDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYV-GCGVSGGEDG--------ARYGP-S-L--MPGGNPA 149 (490)
Q Consensus 83 ~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~l-d~~vsGg~~~--------a~~G~-~-i--m~GG~~~ 149 (490)
.++++.+.+.++++.+|+|++++.........+.+....++|+ +.|++|++.. ...+. . + ...++++
T Consensus 77 ~~vl~~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~~~~r~~~~hPm~G~~~~g~~~a~~~l~~~~~~~~~~~~~~~~~ 156 (735)
T PRK14806 77 EKVLADLKPLLSEHAIVTDVGSTKGNVVDAARAVFGELPAGFVPGHPIAGSEKSGVHAANADLFRNHKVILTPLAETDPA 156 (735)
T ss_pred HHHHHHHHHhcCCCcEEEEcCCCchHHHHHHHHhccccCCeEEecCCcCcCCcchhhhhhhHHhCCCeEEEECCCCCCHH
Confidence 9999999999989999999998775554444444433456665 5688876531 11222 2 2 2346778
Q ss_pred hHHHHHHHHHhhCCceeeCCC
Q psy9637 150 AWPALKPIFQKLNPSFETSAP 170 (490)
Q Consensus 150 a~~~v~~ll~~l~~~~~~~g~ 170 (490)
.++.++++|+.+|..++.+.+
T Consensus 157 ~~~~~~~l~~~~G~~~~~~~~ 177 (735)
T PRK14806 157 ALARVDRLWRAVGADVLHMDV 177 (735)
T ss_pred HHHHHHHHHHHcCCEEEEcCH
Confidence 899999999999998877654
|
|
| >PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.6e-12 Score=117.29 Aligned_cols=97 Identities=25% Similarity=0.440 Sum_probs=81.6
Q ss_pred cEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccC---------CCCeeccCCHHHHHhhCCCCcEEEEec
Q psy9637 6 DIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAK---------GTNIIGAHSLEELVKNLKKPRRVMMLV 76 (490)
Q Consensus 6 ~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~---------~~~i~~~~s~~e~v~~l~~~dvIil~v 76 (490)
||+|||.|.||.++|..|+++||+|++|.|+++.++.+.+.... ..++..+++++++++. +|+|+++|
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~---ad~Iiiav 77 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALED---ADIIIIAV 77 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT----SEEEE-S
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCc---ccEEEecc
Confidence 69999999999999999999999999999999999988875432 1356678899998887 99999999
Q ss_pred CCCchHHHHHHhhcccCCCCCEEEcCCCCC
Q psy9637 77 KAGSAVDDFIDKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 77 p~~~~v~~vl~~l~~~l~~g~iiId~s~~~ 106 (490)
|+ ...+++++.+.++++++.+||.++.+.
T Consensus 78 Ps-~~~~~~~~~l~~~l~~~~~ii~~~KG~ 106 (157)
T PF01210_consen 78 PS-QAHREVLEQLAPYLKKGQIIISATKGF 106 (157)
T ss_dssp -G-GGHHHHHHHHTTTSHTT-EEEETS-SE
T ss_pred cH-HHHHHHHHHHhhccCCCCEEEEecCCc
Confidence 99 589999999999999999999988765
|
This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A .... |
| >PRK07634 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.3e-10 Score=113.59 Aligned_cols=153 Identities=16% Similarity=0.167 Sum_probs=105.4
Q ss_pred CCCCCcEEEEcccHHHHHHHHHHHHCCC---e-EEEEeC-ChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEe
Q psy9637 1 MAAKGDIGLIGLAVMGQNLILNMNDHGF---T-VVAYNR-TTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMML 75 (490)
Q Consensus 1 M~~~~~IgiIGlG~MG~~lA~~L~~~G~---~-V~v~dr-~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~ 75 (490)
|...+||+|||+|.||.+++..|.++|+ + +++++| ++++.+.+.+... +..+.++.+++++ +|+||++
T Consensus 1 ~m~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~---~DiViia 73 (245)
T PRK07634 1 MLKKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYN----VSTTTDWKQHVTS---VDTIVLA 73 (245)
T ss_pred CCCCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHcC----cEEeCChHHHHhc---CCEEEEe
Confidence 4445799999999999999999999873 3 778887 5777777765421 2346788888776 8999999
Q ss_pred cCCCchHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccc-cccCCCCCccccccCC-c--cCCCCCcchH
Q psy9637 76 VKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLY-VGCGVSGGEDGARYGP-S--LMPGGNPAAW 151 (490)
Q Consensus 76 vp~~~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~-ld~~vsGg~~~a~~G~-~--im~GG~~~a~ 151 (490)
+|+. ..+++++++.+.++ +++||.++.+...+..+ +.+ ..+..+ .-+|-.. .....|. . .-..++++..
T Consensus 74 vp~~-~~~~v~~~l~~~~~-~~~vis~~~gi~~~~l~--~~~-~~~~~v~r~~Pn~a--~~v~~g~~~~~~~~~~~~~~~ 146 (245)
T PRK07634 74 MPPS-AHEELLAELSPLLS-NQLVVTVAAGIGPSYLE--ERL-PKGTPVAWIMPNTA--AEIGKSISLYTMGQSVNETHK 146 (245)
T ss_pred cCHH-HHHHHHHHHHhhcc-CCEEEEECCCCCHHHHH--HHc-CCCCeEEEECCcHH--HHHhcCCeEEeeCCCCCHHHH
Confidence 9985 78999999888775 67999988776544322 222 222111 1223111 1122343 2 2234677889
Q ss_pred HHHHHHHHhhCCceee
Q psy9637 152 PALKPIFQKLNPSFET 167 (490)
Q Consensus 152 ~~v~~ll~~l~~~~~~ 167 (490)
+.++.+|+.+|..+..
T Consensus 147 ~~v~~lf~~~G~~~~~ 162 (245)
T PRK07634 147 ETLQLILKGIGTSQLC 162 (245)
T ss_pred HHHHHHHHhCCCEEEE
Confidence 9999999999997753
|
|
| >PTZ00431 pyrroline carboxylate reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.1e-10 Score=112.14 Aligned_cols=199 Identities=15% Similarity=0.111 Sum_probs=119.1
Q ss_pred CCCCCcEEEEcccHHHHHHHHHHHHCCC----eEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEec
Q psy9637 1 MAAKGDIGLIGLAVMGQNLILNMNDHGF----TVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLV 76 (490)
Q Consensus 1 M~~~~~IgiIGlG~MG~~lA~~L~~~G~----~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~v 76 (490)
|.. |||+|||+|.||.+|+..|.++|. +++++||++++. + +..+.++.+++.. +|+||+|+
T Consensus 1 ~~~-mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~~------~-----~~~~~~~~~~~~~---~D~Vilav 65 (260)
T PTZ00431 1 MEN-IRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKNT------P-----FVYLQSNEELAKT---CDIIVLAV 65 (260)
T ss_pred CCC-CEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhcC------C-----eEEeCChHHHHHh---CCEEEEEe
Confidence 543 689999999999999999999872 499999986542 1 1245678887776 89999999
Q ss_pred CCCchHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCCCccccccCCccCCCC---CcchHHH
Q psy9637 77 KAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGGEDGARYGPSLMPGG---NPAAWPA 153 (490)
Q Consensus 77 p~~~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg~~~a~~G~~im~GG---~~~a~~~ 153 (490)
|+ ..+++++.++.+.+.++.+|.+++... .+..+.......+-++++.. -+.....|.+++..+ +++..+.
T Consensus 66 kp-~~~~~vl~~i~~~l~~~~iIS~~aGi~-~~~l~~~~~~~~~vvr~mPn----~p~~~g~g~t~i~~~~~~~~~~~~~ 139 (260)
T PTZ00431 66 KP-DLAGKVLLEIKPYLGSKLLISICGGLN-LKTLEEMVGVEAKIVRVMPN----TPSLVGQGSLVFCANNNVDSTDKKK 139 (260)
T ss_pred CH-HHHHHHHHHHHhhccCCEEEEEeCCcc-HHHHHHHcCCCCeEEEECCC----chhHhcceeEEEEeCCCCCHHHHHH
Confidence 98 589999999998887655666666554 33222211001111233222 222333455333322 4467889
Q ss_pred HHHHHHhhCCceeeCCCCCCCCCCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhcccch
Q psy9637 154 LKPIFQKLNPSFETSAPTPKPQRDKKEFLENIRQALYAS---KIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGGCII 230 (490)
Q Consensus 154 v~~ll~~l~~~~~~~g~~g~~~g~~a~~~Kll~n~l~~~---~~~~~aE~~~la~~a~~~~~~Gld~~~v~~i~~~g~~~ 230 (490)
++.+|+.+|..+... +. .+..+ -++.++ .+..+.|++.-+-. + .|++.++..++......+
T Consensus 140 v~~l~~~~G~~~~v~-E~---------~~d~~-ta~~gsgPA~~~~~~~al~~~~v---~--~Gl~~~~a~~l~~~~~~G 203 (260)
T PTZ00431 140 VIDIFSACGIIQEIK-EK---------DMDIA-TAISGCGPAYVFLFIESLIDAGV---K--NGLNRDVSKNLVLQTILG 203 (260)
T ss_pred HHHHHHhCCcEEEEC-hH---------Hcchh-hhhcCCHHHHHHHHHHHHHHHHH---H--cCCCHHHHHHHHHHHHHH
Confidence 999999999866531 10 01000 111111 22333333332222 1 299999998887654444
Q ss_pred hhHhHh
Q psy9637 231 RSVFLG 236 (490)
Q Consensus 231 ~s~~l~ 236 (490)
.+.++.
T Consensus 204 ~a~ll~ 209 (260)
T PTZ00431 204 SVHMVK 209 (260)
T ss_pred HHHHHH
Confidence 444443
|
|
| >PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=99.26 E-value=6e-12 Score=110.18 Aligned_cols=109 Identities=22% Similarity=0.355 Sum_probs=73.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeEEE-EeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchH
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVA-YNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAV 82 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V~v-~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v 82 (490)
.+||+|||.|++|..|++.|.++||+|.. |+|+++..+++...-.. ..+.++.|+++. +|+||++||++ ++
T Consensus 10 ~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~----~~~~~~~~~~~~---aDlv~iavpDd-aI 81 (127)
T PF10727_consen 10 RLKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFIGA----GAILDLEEILRD---ADLVFIAVPDD-AI 81 (127)
T ss_dssp --EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT---------TTGGGCC----SEEEE-S-CC-HH
T ss_pred ccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCccccccccccccc----cccccccccccc---CCEEEEEechH-HH
Confidence 47999999999999999999999999875 58998888877654221 134566666655 99999999996 99
Q ss_pred HHHHHhhccc--CCCCCEEEcCCCCChHHHHHHHHHHHHcccc
Q psy9637 83 DDFIDKLVPL--LEKGDIIIDGGNSEYQDTDRRSKALEAKGLL 123 (490)
Q Consensus 83 ~~vl~~l~~~--l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~ 123 (490)
.++.++|... ..+|++|+.+|-+...+.. +-++++|..
T Consensus 82 ~~va~~La~~~~~~~g~iVvHtSGa~~~~vL---~p~~~~Ga~ 121 (127)
T PF10727_consen 82 AEVAEQLAQYGAWRPGQIVVHTSGALGSDVL---APARERGAI 121 (127)
T ss_dssp HHHHHHHHCC--S-TT-EEEES-SS--GGGG---HHHHHTT-E
T ss_pred HHHHHHHHHhccCCCCcEEEECCCCChHHhh---hhHHHCCCe
Confidence 9999999887 7899999999987755443 344556653
|
This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A. |
| >COG2085 Predicted dinucleotide-binding enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.25 E-value=7.6e-11 Score=110.48 Aligned_cols=159 Identities=20% Similarity=0.213 Sum_probs=107.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChH-HHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchH
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTA-KVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAV 82 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~-~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v 82 (490)
||+|+|+|.|+||..+|++|+++||+|++-+|+.+ +.+...+.-. ..+ ...++.++++. +|+||+.||- ..+
T Consensus 1 m~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~--~~i-~~~~~~dA~~~---aDVVvLAVP~-~a~ 73 (211)
T COG2085 1 MMIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALG--PLI-TGGSNEDAAAL---ADVVVLAVPF-EAI 73 (211)
T ss_pred CcEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhc--ccc-ccCChHHHHhc---CCEEEEeccH-HHH
Confidence 47899999999999999999999999999865544 4444433221 122 35677788876 8999999999 488
Q ss_pred HHHHHhhcccCCCCCEEEcCCCCCh--------------HHHHHHH-HHHHH----ccccccccCCCCCccccccCC--c
Q psy9637 83 DDFIDKLVPLLEKGDIIIDGGNSEY--------------QDTDRRS-KALEA----KGLLYVGCGVSGGEDGARYGP--S 141 (490)
Q Consensus 83 ~~vl~~l~~~l~~g~iiId~s~~~~--------------~~~~~~~-~~l~~----~gi~~ld~~vsGg~~~a~~G~--~ 141 (490)
.+++.++...+. |+||||.+|..+ ....+.. +.+.. +.++-+.+.+.-.-.... +. .
T Consensus 74 ~~v~~~l~~~~~-~KIvID~tnp~~~~~~~~~~~~~~~~~saae~va~~lp~akVVkAFn~i~a~~l~~~~~~~-~~~~v 151 (211)
T COG2085 74 PDVLAELRDALG-GKIVIDATNPIEVNGEPGDLYLVPSEGSAAEIVAKLLPGAKVVKAFNTIPAAVLADLAKPG-GRRDV 151 (211)
T ss_pred HhHHHHHHHHhC-CeEEEecCCCccccCCccccccCCCCCcHHHHHHHHCCCcchhhhhcccCHHHhccCCCcC-CceeE
Confidence 899999988775 999999999621 1111111 11111 122223332222111111 33 4
Q ss_pred cCCCCCcchHHHHHHHHHhhCCceeeCCCC
Q psy9637 142 LMPGGNPAAWPALKPIFQKLNPSFETSAPT 171 (490)
Q Consensus 142 im~GG~~~a~~~v~~ll~~l~~~~~~~g~~ 171 (490)
+++|-|.++-+.+..+.+.+|-..+.+|+.
T Consensus 152 ~vagDD~~Ak~~v~~L~~~iG~~~ld~G~L 181 (211)
T COG2085 152 LVAGDDAEAKAVVAELAEDIGFRPLDAGPL 181 (211)
T ss_pred EEecCcHHHHHHHHHHHHhcCcceeecccc
Confidence 556666679999999999998887877875
|
|
| >COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.6e-09 Score=106.29 Aligned_cols=204 Identities=15% Similarity=0.183 Sum_probs=130.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCC----CeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCC
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHG----FTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAG 79 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G----~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~ 79 (490)
+++|||||.|+||..|+..|.++| .+|++.||++++.+.+.+.... ..+++..+++.. +|+||++|++
T Consensus 1 ~~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~g~----~~~~~~~~~~~~---advv~LavKP- 72 (266)
T COG0345 1 MMKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYGV----VTTTDNQEAVEE---ADVVFLAVKP- 72 (266)
T ss_pred CceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHcCC----cccCcHHHHHhh---CCEEEEEeCh-
Confidence 368999999999999999999999 6899999999999866655432 126777888887 9999999998
Q ss_pred chHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccc-cCCCCCccccccCC-ccCCC--CCcchHHHHH
Q psy9637 80 SAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVG-CGVSGGEDGARYGP-SLMPG--GNPAAWPALK 155 (490)
Q Consensus 80 ~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld-~~vsGg~~~a~~G~-~im~G--G~~~a~~~v~ 155 (490)
+.+.+++..+.+ ..++++||..--..+....+ +.+. +.+.+- +|-. +.....|. .+..+ .+++..+.+.
T Consensus 73 q~~~~vl~~l~~-~~~~~lvISiaAGv~~~~l~--~~l~--~~~vvR~MPNt--~a~vg~g~t~i~~~~~~~~~~~~~v~ 145 (266)
T COG0345 73 QDLEEVLSKLKP-LTKDKLVISIAAGVSIETLE--RLLG--GLRVVRVMPNT--PALVGAGVTAISANANVSEEDKAFVE 145 (266)
T ss_pred HhHHHHHHHhhc-ccCCCEEEEEeCCCCHHHHH--HHcC--CCceEEeCCCh--HHHHcCcceeeecCccCCHHHHHHHH
Confidence 699999999998 78899999877655333222 2221 222221 2321 12223444 33332 2557778899
Q ss_pred HHHHhhCCceeeCCCCCCCCCCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhcccchhhH
Q psy9637 156 PIFQKLNPSFETSAPTPKPQRDKKEFLENIRQA--LYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGGCIIRSV 233 (490)
Q Consensus 156 ~ll~~l~~~~~~~g~~g~~~g~~a~~~Kll~n~--l~~~~~~~~aE~~~la~~a~~~~~~Gld~~~v~~i~~~g~~~~s~ 233 (490)
.+|+.+|..+... +. .++.+... -.-+.+..+.|++..+-.. .|++.++..++....-.+.+.
T Consensus 146 ~l~~~~G~v~~v~-E~---------~~da~TaisGSgPAyv~~~iEal~~agv~-----~Gl~~~~A~~l~~~t~~Gaak 210 (266)
T COG0345 146 ALLSAVGKVVEVE-ES---------LMDAVTALSGSGPAYVFLFIEALADAGVR-----LGLPREEARELAAQTVAGAAK 210 (266)
T ss_pred HHHHhcCCeEEec-hH---------HhhHHHHHhcCCHHHHHHHHHHHHHHHHH-----cCCCHHHHHHHHHHHHHHHHH
Confidence 9999999865432 11 11111000 0012334444555443322 299999888887544444444
Q ss_pred hHhH
Q psy9637 234 FLGN 237 (490)
Q Consensus 234 ~l~~ 237 (490)
++..
T Consensus 211 ll~e 214 (266)
T COG0345 211 LLLE 214 (266)
T ss_pred HHHh
Confidence 4443
|
|
| >PRK05479 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.2e-10 Score=115.82 Aligned_cols=188 Identities=15% Similarity=0.119 Sum_probs=120.5
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHH-HcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFL-ANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~-~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
++|||||+|.||.++|++|.+.|++|++++++.++..... +.+. . ..++.++++. +|+|+++||+. ...
T Consensus 18 ktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G~-----~-~~s~~eaa~~---ADVVvLaVPd~-~~~ 87 (330)
T PRK05479 18 KKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEADGF-----E-VLTVAEAAKW---ADVIMILLPDE-VQA 87 (330)
T ss_pred CEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHHCCC-----e-eCCHHHHHhc---CCEEEEcCCHH-HHH
Confidence 6899999999999999999999999999988755544433 3332 2 3488888887 99999999986 568
Q ss_pred HHH-HhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccccc-ccCCCCCccc-----cccCC-ccC-CCCC--cchHH
Q psy9637 84 DFI-DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYV-GCGVSGGEDG-----ARYGP-SLM-PGGN--PAAWP 152 (490)
Q Consensus 84 ~vl-~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~l-d~~vsGg~~~-----a~~G~-~im-~GG~--~~a~~ 152 (490)
.++ +++.+.+++|.+|+-+...... ..+.....++..+ -+|-.-+..- ...|. ++. +..+ .++.+
T Consensus 88 ~V~~~~I~~~Lk~g~iL~~a~G~~i~----~~~~~p~~~~~Vi~vaPn~Pg~~vr~~~~~G~Gv~~l~av~~d~t~~a~~ 163 (330)
T PRK05479 88 EVYEEEIEPNLKEGAALAFAHGFNIH----FGQIVPPADVDVIMVAPKGPGHLVRREYEEGGGVPCLIAVHQDASGNAKD 163 (330)
T ss_pred HHHHHHHHhcCCCCCEEEECCCCChh----hceeccCCCCcEEEeCCCCCchhhhhhhhcCCCceEEEEecCCCCHHHHH
Confidence 888 7899999999988655442211 1111112233222 2243322210 12344 455 5665 67899
Q ss_pred HHHHHHHhhCCceeeC--CCCCCCCCCHHHH-HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHH
Q psy9637 153 ALKPIFQKLNPSFETS--APTPKPQRDKKEF-LENI--RQALYASKIVSYAQGFMLMRQAAEIHGWKLNYG 218 (490)
Q Consensus 153 ~v~~ll~~l~~~~~~~--g~~g~~~g~~a~~-~Kll--~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~~ 218 (490)
.+..+++.+|.....+ ... +.+. ..+. ...+.......+..++.+...+ |.+++
T Consensus 164 ~a~~l~~aiG~~~~g~~~ttf------~~e~~~dl~geq~vl~gg~~~l~~~~~e~l~ea------G~~pe 222 (330)
T PRK05479 164 LALAYAKGIGGTRAGVIETTF------KEETETDLFGEQAVLCGGLTELIKAGFETLVEA------GYQPE 222 (330)
T ss_pred HHHHHHHHcCCCccceeeeee------cccccccchhhHHHHhhHHHHHHHHHHHHHHHc------CCCHH
Confidence 9999999999864210 000 0011 0111 2334555666677788888888 88887
|
|
| >PRK06928 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.23 E-value=5.2e-10 Score=111.58 Aligned_cols=150 Identities=14% Similarity=0.147 Sum_probs=102.8
Q ss_pred CcEEEEcccHHHHHHHHHHHHCC----CeEEEEeCCh-HHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCC
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHG----FTVVAYNRTT-AKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAG 79 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G----~~V~v~dr~~-~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~ 79 (490)
++|+|||+|.||..|+..|.++| ++|.+|+|++ ++.+.+..... .+..+.+..+++.. +|+||+|+|+
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~~~---~~~~~~~~~e~~~~---aDvVilavpp- 74 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKYP---TVELADNEAEIFTK---CDHSFICVPP- 74 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHHcC---CeEEeCCHHHHHhh---CCEEEEecCH-
Confidence 68999999999999999999998 7899999864 44555543321 12345777787776 8999999997
Q ss_pred chHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccc-cccCCCCCccccccCCccC-CC--CCcchHHHHH
Q psy9637 80 SAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLY-VGCGVSGGEDGARYGPSLM-PG--GNPAAWPALK 155 (490)
Q Consensus 80 ~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~-ld~~vsGg~~~a~~G~~im-~G--G~~~a~~~v~ 155 (490)
..+.++++++.+.+.++.+||...++...... .+.+.. ... --+|- .+.....|.+.+ .+ -+++..+.++
T Consensus 75 ~~~~~vl~~l~~~l~~~~~ivS~~aGi~~~~l--~~~~~~--~~vvR~MPN--~~~~~g~g~t~~~~~~~~~~~~~~~v~ 148 (277)
T PRK06928 75 LAVLPLLKDCAPVLTPDRHVVSIAAGVSLDDL--LEITPG--LQVSRLIPS--LTSAVGVGTSLVAHAETVNEANKSRLE 148 (277)
T ss_pred HHHHHHHHHHHhhcCCCCEEEEECCCCCHHHH--HHHcCC--CCEEEEeCc--cHHHHhhhcEEEecCCCCCHHHHHHHH
Confidence 58999999999988888899998887654422 222211 111 11221 122234555333 33 2345677899
Q ss_pred HHHHhhCCceee
Q psy9637 156 PIFQKLNPSFET 167 (490)
Q Consensus 156 ~ll~~l~~~~~~ 167 (490)
.+|+.+|..+..
T Consensus 149 ~l~~~~G~~~~v 160 (277)
T PRK06928 149 ETLSHFSHVMTI 160 (277)
T ss_pred HHHHhCCCEEEE
Confidence 999999986543
|
|
| >cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.9e-10 Score=107.84 Aligned_cols=138 Identities=22% Similarity=0.302 Sum_probs=100.7
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHc-ccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLAN-EAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~-g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
++|+|+|+|+||..+|++|.+.|++|+++|+++++++.+.+. +. ... +..++... .+|+++.|...+...+
T Consensus 29 k~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~g~-----~~v-~~~~l~~~--~~Dv~vp~A~~~~I~~ 100 (200)
T cd01075 29 KTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARAAELFGA-----TVV-APEEIYSV--DADVFAPCALGGVIND 100 (200)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCC-----EEE-cchhhccc--cCCEEEecccccccCH
Confidence 689999999999999999999999999999999988887765 32 123 33444432 3899986765554445
Q ss_pred HHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccc-cCC-CCCccccccCCccCCCCCc-chHHHHHHHHH
Q psy9637 84 DFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVG-CGV-SGGEDGARYGPSLMPGGNP-AAWPALKPIFQ 159 (490)
Q Consensus 84 ~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld-~~v-sGg~~~a~~G~~im~GG~~-~a~~~v~~ll~ 159 (490)
+.++.+ +.++|++.+|+...+ .+..+.++++|+.|++ ... +| +...+...|+++.+ ++.++++++++
T Consensus 101 ~~~~~l-----~~~~v~~~AN~~~~~-~~~~~~L~~~Gi~~~Pd~~~NaG---Gv~~~~~e~~~~~~~~~~~~~~~~~~ 170 (200)
T cd01075 101 DTIPQL-----KAKAIAGAANNQLAD-PRHGQMLHERGILYAPDYVVNAG---GLINVADELYGGNEARVLAKVEAIYD 170 (200)
T ss_pred HHHHHc-----CCCEEEECCcCccCC-HhHHHHHHHCCCEEeCceeeeCc---CceeehhHHhCCcHHHHHHHHHHHHH
Confidence 555544 368999999987644 6677889999999987 555 55 34445677888764 55666666544
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc |
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=99.17 E-value=7.9e-11 Score=109.93 Aligned_cols=150 Identities=16% Similarity=0.235 Sum_probs=96.1
Q ss_pred cEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHc-----------ccC--------CCCeeccCCHHHHHhhC
Q psy9637 6 DIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLAN-----------EAK--------GTNIIGAHSLEELVKNL 66 (490)
Q Consensus 6 ~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~-----------g~~--------~~~i~~~~s~~e~v~~l 66 (490)
||+|||.|.||..+|..++.+|++|++||++++..+...+. +.. -.++...+++++++ +
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~-~- 78 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV-D- 78 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC-T-
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh-h-
Confidence 69999999999999999999999999999999976653321 110 13566788888887 4
Q ss_pred CCCcEEEEecCCCchHH-HHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHH--H--ccccccccCCCCCccccccCCc
Q psy9637 67 KKPRRVMMLVKAGSAVD-DFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALE--A--KGLLYVGCGVSGGEDGARYGPS 141 (490)
Q Consensus 67 ~~~dvIil~vp~~~~v~-~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~--~--~gi~~ld~~vsGg~~~a~~G~~ 141 (490)
+|+||-++|....++ +++.+|...++++.++...+++.+... +.+.+. + -|+||+..|-.-..- =
T Consensus 79 --adlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~~--la~~~~~p~R~ig~Hf~~P~~~~~lV------E 148 (180)
T PF02737_consen 79 --ADLVIEAIPEDLELKQELFAELDEICPPDTILASNTSSLSISE--LAAALSRPERFIGMHFFNPPHLMPLV------E 148 (180)
T ss_dssp --ESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HHH--HHTTSSTGGGEEEEEE-SSTTT--EE------E
T ss_pred --hheehhhccccHHHHHHHHHHHHHHhCCCceEEecCCCCCHHH--HHhccCcCceEEEEecccccccCceE------E
Confidence 899999999987776 456888888888888877766654332 222221 1 166766533110000 1
Q ss_pred cCCC--CCcchHHHHHHHHHhhCCceee
Q psy9637 142 LMPG--GNPAAWPALKPIFQKLNPSFET 167 (490)
Q Consensus 142 im~G--G~~~a~~~v~~ll~~l~~~~~~ 167 (490)
++.| -+++.++++..+++.++...+.
T Consensus 149 vv~~~~T~~~~~~~~~~~~~~~gk~pv~ 176 (180)
T PF02737_consen 149 VVPGPKTSPETVDRVRALLRSLGKTPVV 176 (180)
T ss_dssp EEE-TTS-HHHHHHHHHHHHHTT-EEEE
T ss_pred EeCCCCCCHHHHHHHHHHHHHCCCEEEE
Confidence 2222 3678999999999999876554
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >KOG2666|consensus | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.4e-09 Score=103.57 Aligned_cols=254 Identities=17% Similarity=0.216 Sum_probs=176.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCC--CeEEEEeCChHHHHHHHHccc--------------CCCCeeccCCHHHHHhhCC
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHG--FTVVAYNRTTAKVDSFLANEA--------------KGTNIIGAHSLEELVKNLK 67 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G--~~V~v~dr~~~~~~~l~~~g~--------------~~~~i~~~~s~~e~v~~l~ 67 (490)
|+||..||+|.+|.+-..-++-+- .+|++.|.+.+++.+...... ++.++...++.+..+..
T Consensus 1 ~~kiccigagyvggptcavia~kcp~i~vtvvd~s~~ri~~wnsd~lpiyepgldevv~~crgknlffstdiekai~e-- 78 (481)
T KOG2666|consen 1 MVKICCIGAGYVGGPTCAVIALKCPDIEVTVVDISVPRINAWNSDKLPIYEPGLDEVVKQCRGKNLFFSTDIEKAIKE-- 78 (481)
T ss_pred CceEEEecCcccCCcchheeeecCCceEEEEEecCchHhhcccCCCCcccCCCHHHHHHHhcCCceeeecchHHHhhh--
Confidence 368999999999998777666443 578899999888775543211 14566677888888887
Q ss_pred CCcEEEEecCCCc--------------hHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHH--Hccccc--cccCC
Q psy9637 68 KPRRVMMLVKAGS--------------AVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALE--AKGLLY--VGCGV 129 (490)
Q Consensus 68 ~~dvIil~vp~~~--------------~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~--~~gi~~--ld~~v 129 (490)
+|+||++|.++. -++++...+.......+||+.-||+..+..+.+...+. .+|++| +.-|-
T Consensus 79 -adlvfisvntptkt~g~gkg~aadlky~es~ar~ia~~s~~~kivvekstvpv~aaesi~~il~~n~~~i~fqilsnpe 157 (481)
T KOG2666|consen 79 -ADLVFISVNTPTKTYGLGKGKAADLKYWESAARMIADVSVSDKIVVEKSTVPVKAAESIEKILNHNSKGIKFQILSNPE 157 (481)
T ss_pred -cceEEEEecCCcccccCCCCcccchhHHHHHHHHHHHhccCCeEEEeeccccchHHHHHHHHHhcCCCCceeEeccChH
Confidence 999999996543 23455556666667789999999988777777666664 346655 33343
Q ss_pred CCCcccc---ccCC-ccCCCCCc--ch---HHHHHHHHHhhCCc--eeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy9637 130 SGGEDGA---RYGP-SLMPGGNP--AA---WPALKPIFQKLNPS--FETSAPTPKPQRDKKEFLENIRQALYASKIVSYA 198 (490)
Q Consensus 130 sGg~~~a---~~G~-~im~GG~~--~a---~~~v~~ll~~l~~~--~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~a 198 (490)
+-.+-.| ...+ .+++||++ +. ++.+..+++..-.. ++....- .+++-|++.|++++-.+.+.+
T Consensus 158 flaegtaikdl~npdrvligg~etpeg~~av~~l~~vyehwvp~~~iittntw------sselsklaanaflaqrissin 231 (481)
T KOG2666|consen 158 FLAEGTAIKDLFNPDRVLIGGRETPEGFQAVQALKDVYEHWVPREQIITTNTW------SSELSKLAANAFLAQRISSIN 231 (481)
T ss_pred HhcccchhhhhcCCceEEECCCCChhHHHHHHHHHHHHHhhCcccceeecccc------HHHHHHHHHHHHHHHHHhhhH
Confidence 2211111 1223 56788865 43 44444555544331 2221111 468899999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHhcccchhhHhHhHhHHhhccCcccccccCChhHHHHHHHHHHHHHHHHHHHHHc
Q psy9637 199 QGFMLMRQAAEIHGWKLNYGGIALMWRGGCIIRSVFLGNIKAAFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSALL 278 (490)
Q Consensus 199 E~~~la~~a~~~~~~Gld~~~v~~i~~~g~~~~s~~l~~i~~~~~~~~~~~~~~~~~~f~~~l~~~~kDl~~~~~~A~~~ 278 (490)
-..+++++- |.|..++.......+.|.+.||.. +-+|+ -.+.+||+-.++-.++.+
T Consensus 232 s~salceat------gadv~eva~avg~d~rig~kfl~a----------------svgfg--gscfqkdilnlvyice~l 287 (481)
T KOG2666|consen 232 SMSALCEAT------GADVSEVAYAVGTDSRIGSKFLNA----------------SVGFG--GSCFQKDILNLVYICECL 287 (481)
T ss_pred HHHHHHHhc------CCCHHHHHHHhcccccccHHHhhc----------------ccCcC--chhHHHHHHHHHHHHhcC
Confidence 999999999 999999999998888888888765 22343 346899999999999999
Q ss_pred CCCchHHHHHHHHHHHH
Q psy9637 279 GIPTPAFATALAFYDGY 295 (490)
Q Consensus 279 gv~~P~~~aa~~~~~~~ 295 (490)
|+|- +.+|+++.
T Consensus 288 nlpe-----va~ywqqv 299 (481)
T KOG2666|consen 288 NLPE-----VAEYWQQV 299 (481)
T ss_pred CChH-----HHHHHHHH
Confidence 8773 34555543
|
|
| >PRK07574 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=1e-09 Score=113.64 Aligned_cols=111 Identities=14% Similarity=0.215 Sum_probs=93.3
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
++|||||+|.||..+|++|...|.+|.+|||++...+.....+ +....+++++++. +|+|++++|..+.++.
T Consensus 193 ktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~~~g-----~~~~~~l~ell~~---aDvV~l~lPlt~~T~~ 264 (385)
T PRK07574 193 MTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPEEVEQELG-----LTYHVSFDSLVSV---CDVVTIHCPLHPETEH 264 (385)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCchhhHhhcC-----ceecCCHHHHhhc---CCEEEEcCCCCHHHHH
Confidence 5899999999999999999999999999999864333222222 2345789999887 9999999999999999
Q ss_pred HH-HhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccc
Q psy9637 85 FI-DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLL 123 (490)
Q Consensus 85 vl-~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~ 123 (490)
++ ++.+..+++|.++|+++.+..-+...+.+.++...+.
T Consensus 265 li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~i~ 304 (385)
T PRK07574 265 LFDADVLSRMKRGSYLVNTARGKIVDRDAVVRALESGHLA 304 (385)
T ss_pred HhCHHHHhcCCCCcEEEECCCCchhhHHHHHHHHHhCCcc
Confidence 98 5688889999999999999988999988988877554
|
|
| >PRK12480 D-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=6.3e-10 Score=113.51 Aligned_cols=109 Identities=20% Similarity=0.264 Sum_probs=91.2
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
++|||||+|.||..+|++|...|++|.+||++++....+. ....+++++++. +|+|++++|....+..
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~~~---------~~~~~l~ell~~---aDiVil~lP~t~~t~~ 214 (330)
T PRK12480 147 MTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLDFL---------TYKDSVKEAIKD---ADIISLHVPANKESYH 214 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHhhhhh---------hccCCHHHHHhc---CCEEEEeCCCcHHHHH
Confidence 5899999999999999999999999999999976543221 135688888887 9999999999877777
Q ss_pred HH-HhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccccc
Q psy9637 85 FI-DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYV 125 (490)
Q Consensus 85 vl-~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~l 125 (490)
++ .++++.+++|.++|+++.+.--+...+.+.+....+...
T Consensus 215 li~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~~g~i~ga 256 (330)
T PRK12480 215 LFDKAMFDHVKKGAILVNAARGAVINTPDLIAAVNDGTLLGA 256 (330)
T ss_pred HHhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHHcCCeeEE
Confidence 77 677888999999999999888888888888887655443
|
|
| >PLN03139 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.6e-09 Score=112.11 Aligned_cols=111 Identities=13% Similarity=0.189 Sum_probs=93.4
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
++|||||+|+||..+|++|..-|.+|.+||+++...+...+.+. ...+++++++.. +|+|++++|..+.++.
T Consensus 200 ktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~~~~g~-----~~~~~l~ell~~---sDvV~l~lPlt~~T~~ 271 (386)
T PLN03139 200 KTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPELEKETGA-----KFEEDLDAMLPK---CDVVVINTPLTEKTRG 271 (386)
T ss_pred CEEEEEeecHHHHHHHHHHHHCCCEEEEECCCCcchhhHhhcCc-----eecCCHHHHHhh---CCEEEEeCCCCHHHHH
Confidence 58999999999999999999999999999998543333333222 245689999987 9999999999999999
Q ss_pred HH-HhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccc
Q psy9637 85 FI-DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLL 123 (490)
Q Consensus 85 vl-~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~ 123 (490)
++ .+++..+++|.++|+++.+..-+...+.+.++...+.
T Consensus 272 li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~l~ 311 (386)
T PLN03139 272 MFNKERIAKMKKGVLIVNNARGAIMDTQAVADACSSGHIG 311 (386)
T ss_pred HhCHHHHhhCCCCeEEEECCCCchhhHHHHHHHHHcCCce
Confidence 98 5688889999999999999888888888888877554
|
|
| >COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.06 E-value=4.8e-09 Score=104.90 Aligned_cols=193 Identities=16% Similarity=0.145 Sum_probs=120.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHH-----------HcccC--------CCCeeccCCHHHHHh
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFL-----------ANEAK--------GTNIIGAHSLEELVK 64 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~-----------~~g~~--------~~~i~~~~s~~e~v~ 64 (490)
.++|+|||.|.||..+|..++..||+|+++|++++.+++.. +.|.. -.++...+++.
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~---- 78 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLA---- 78 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchh----
Confidence 46899999999999999999998899999999977655432 22211 12344445555
Q ss_pred hCCCCcEEEEecCCCchHHH-HHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHH--H--ccccccccCCCCCccccccC
Q psy9637 65 NLKKPRRVMMLVKAGSAVDD-FIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALE--A--KGLLYVGCGVSGGEDGARYG 139 (490)
Q Consensus 65 ~l~~~dvIil~vp~~~~v~~-vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~--~--~gi~~ld~~vsGg~~~a~~G 139 (490)
.++.+|+||-+|+....++. ++.++-+.++++.|+-..+++.+.+. +.+.+. + -|+||...|..-.--
T Consensus 79 ~l~~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSsl~it~--ia~~~~rper~iG~HFfNP~~~m~LV----- 151 (307)
T COG1250 79 ALKDADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSSLSITE--LAEALKRPERFIGLHFFNPVPLMPLV----- 151 (307)
T ss_pred HhccCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCCCCHHH--HHHHhCCchhEEEEeccCCCCcceeE-----
Confidence 23449999999999988874 55677777766666654444444332 333332 1 277777654211111
Q ss_pred CccCCC--CCcchHHHHHHHHHhhCCceeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCH
Q psy9637 140 PSLMPG--GNPAAWPALKPIFQKLNPSFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNY 217 (490)
Q Consensus 140 ~~im~G--G~~~a~~~v~~ll~~l~~~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~ 217 (490)
-++.| -++++++++..+.+.++.......+.. | ..++ ........|++.+...= ..++
T Consensus 152 -EvI~g~~T~~e~~~~~~~~~~~igK~~vv~~D~p---G---Fi~N-------Ril~~~~~eA~~l~~eG------va~~ 211 (307)
T COG1250 152 -EVIRGEKTSDETVERVVEFAKKIGKTPVVVKDVP---G---FIVN-------RLLAALLNEAIRLLEEG------VATP 211 (307)
T ss_pred -EEecCCCCCHHHHHHHHHHHHHcCCCCEeecCCC---c---eehH-------hHHHHHHHHHHHHHHhC------CCCH
Confidence 11222 146899999999999997654433321 0 1111 12234455666666552 4888
Q ss_pred HHHHHHHhcc
Q psy9637 218 GGIALMWRGG 227 (490)
Q Consensus 218 ~~v~~i~~~g 227 (490)
+++=.+|+.+
T Consensus 212 e~ID~~~~~~ 221 (307)
T COG1250 212 EEIDAAMRQG 221 (307)
T ss_pred HHHHHHHHhc
Confidence 8888888654
|
|
| >PRK13243 glyoxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.05 E-value=1e-09 Score=112.13 Aligned_cols=109 Identities=23% Similarity=0.316 Sum_probs=91.4
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
++|||||+|.||..+|++|...|++|.+|||++.... ....+. ...+++++++. +|+|++++|....++.
T Consensus 151 ktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~-~~~~~~------~~~~l~ell~~---aDiV~l~lP~t~~T~~ 220 (333)
T PRK13243 151 KTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRKPEA-EKELGA------EYRPLEELLRE---SDFVSLHVPLTKETYH 220 (333)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCChhh-HHHcCC------EecCHHHHHhh---CCEEEEeCCCChHHhh
Confidence 5899999999999999999999999999999865432 222222 24588998887 9999999999988988
Q ss_pred HH-HhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccc
Q psy9637 85 FI-DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLL 123 (490)
Q Consensus 85 vl-~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~ 123 (490)
++ .+.+..+++|.++|+++.+...+...+.+.+.+..+.
T Consensus 221 ~i~~~~~~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g~i~ 260 (333)
T PRK13243 221 MINEERLKLMKPTAILVNTARGKVVDTKALVKALKEGWIA 260 (333)
T ss_pred ccCHHHHhcCCCCeEEEECcCchhcCHHHHHHHHHcCCeE
Confidence 88 5788889999999999999988988888888876554
|
|
| >TIGR00745 apbA_panE 2-dehydropantoate 2-reductase | Back alignment and domain information |
|---|
Probab=99.03 E-value=1e-08 Score=102.47 Aligned_cols=248 Identities=19% Similarity=0.148 Sum_probs=140.0
Q ss_pred HHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccC----CCCe-----eccCCHHHHHhhCCCCcEEEEecCCCchHHHH
Q psy9637 15 MGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAK----GTNI-----IGAHSLEELVKNLKKPRRVMMLVKAGSAVDDF 85 (490)
Q Consensus 15 MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~----~~~i-----~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~v 85 (490)
||..+|..|+++||+|++++|+ +..+.+.+.|.. ..+. ...+++++ ++.+|+||++|++. +++++
T Consensus 2 iG~~~a~~L~~~G~~V~l~~r~-~~~~~i~~~Gl~i~~~~~~~~~~~~~~~~~~~~----~~~~D~iiv~vKs~-~~~~~ 75 (293)
T TIGR00745 2 VGSLYGAYLARAGHDVTLLARG-EQLEALNQEGLRIVSLGGEFQFRPVSAATSPEE----LPPADLVIITVKAY-QTEEA 75 (293)
T ss_pred chHHHHHHHHhCCCcEEEEecH-HHHHHHHHCCcEEEecCCcEEEcccccccChhh----cCCCCEEEEeccch-hHHHH
Confidence 7899999999999999999997 667777765532 1111 12233333 23489999999995 89999
Q ss_pred HHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHc----cccccccCCCCCccccccCC-ccCCCCCc---chHHHHHHH
Q psy9637 86 IDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAK----GLLYVGCGVSGGEDGARYGP-SLMPGGNP---AAWPALKPI 157 (490)
Q Consensus 86 l~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~----gi~~ld~~vsGg~~~a~~G~-~im~GG~~---~a~~~v~~l 157 (490)
++.+.+.+.++.+||-..|+... .....+.+... |+.+..+-..+...-...+. .+.+|..+ +..+.+..+
T Consensus 76 l~~l~~~l~~~~~iv~~qNG~g~-~~~l~~~~~~~~v~~g~~~~~~~~~~pg~v~~~~~~~~~iG~~~~~~~~~~~l~~~ 154 (293)
T TIGR00745 76 AALLLPLIGKNTKVLFLQNGLGH-EERLRELLPARRILGGVVTHGAVREEPGVVHHAGLGATKIGDYVGENEAVEALAEL 154 (293)
T ss_pred HHHhHhhcCCCCEEEEccCCCCC-HHHHHHHhCccCEEEEEEEEeeEEcCCcEEEEeccccEEEecCCCchHHHHHHHHH
Confidence 99999999999999999987632 22222333221 22233332222111111222 34444322 334566666
Q ss_pred HHhhCCceeeCCCCCCCCCCHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHhCCCCC
Q psy9637 158 FQKLNPSFETSAPTPKPQRDKKEFLENIRQALY---------------------ASKIVSYAQGFMLMRQAAEIHGWKLN 216 (490)
Q Consensus 158 l~~l~~~~~~~g~~g~~~g~~a~~~Kll~n~l~---------------------~~~~~~~aE~~~la~~a~~~~~~Gld 216 (490)
|+..+.++...... ....+.|++.|+.. ......+.|+..++++. |..++
T Consensus 155 l~~~~~~~~~~~di-----~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~~~v~~a~----G~~~~ 225 (293)
T TIGR00745 155 LNEAGIPAELHGDI-----LAAIWKKLLVNAAINPLTALLDCKNGELLENPEARELLRRLMDEVVRVARAE----GVDLP 225 (293)
T ss_pred HHhCCCCCEecchH-----HHHHHHHHhheechhHHHHHHCCccceeccChhHHHHHHHHHHHHHHHHHhC----CCCCC
Confidence 76655443322221 13445555555422 23344567777777766 33444
Q ss_pred HHHHHHHHhc----ccchhhHhHhHhHHhhccCcccccccCChhHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHH
Q psy9637 217 YGGIALMWRG----GCIIRSVFLGNIKAAFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSALLGIPTPAFATALAFY 292 (490)
Q Consensus 217 ~~~v~~i~~~----g~~~~s~~l~~i~~~~~~~~~~~~~~~~~~f~~~l~~~~kDl~~~~~~A~~~gv~~P~~~aa~~~~ 292 (490)
.+.+.+.+.. ....+|.+++++.. +-..+++.. .+.+++.|+++|+|+|..+..++.+
T Consensus 226 ~~~~~~~~~~~~~~~~~~~sSm~~D~~~---------------gr~tEid~i---~G~~v~~a~~~gv~~P~~~~l~~~~ 287 (293)
T TIGR00745 226 DDEVEELVRAVIRMTAENTSSMLQDLLR---------------GRRTEIDAI---NGAVVRLAEKLGIDAPVNRTLYALL 287 (293)
T ss_pred HHHHHHHHHHHHhcCCCCCChHHHHHHc---------------CCcchHHHh---ccHHHHHHHHcCCCCChHHHHHHHH
Confidence 4444443321 11111222222110 001122211 4568999999999999999999887
Q ss_pred HHHH
Q psy9637 293 DGYR 296 (490)
Q Consensus 293 ~~~~ 296 (490)
+...
T Consensus 288 ~~~e 291 (293)
T TIGR00745 288 KALE 291 (293)
T ss_pred HHhh
Confidence 6553
|
This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH |
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.02 E-value=9.3e-10 Score=99.62 Aligned_cols=118 Identities=19% Similarity=0.186 Sum_probs=84.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCC-CeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCch-
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHG-FTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSA- 81 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G-~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~- 81 (490)
.++|+|||+|.||..++..|.+.| ++|+++||++++.+.+.+............++.++++. +|+|++|+|.+..
T Consensus 19 ~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~Dvvi~~~~~~~~~ 95 (155)
T cd01065 19 GKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEELLAE---ADLIINTTPVGMKP 95 (155)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhcccc---CCEEEeCcCCCCCC
Confidence 368999999999999999999996 89999999999888876543210000124556665544 9999999999754
Q ss_pred HHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccccccc
Q psy9637 82 VDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGC 127 (490)
Q Consensus 82 v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~ 127 (490)
++.+... ...++++.+++|+++.. ..+ ...+.+++.|++|++.
T Consensus 96 ~~~~~~~-~~~~~~~~~v~D~~~~~-~~~-~l~~~~~~~g~~~v~g 138 (155)
T cd01065 96 GDELPLP-PSLLKPGGVVYDVVYNP-LET-PLLKEARALGAKTIDG 138 (155)
T ss_pred CCCCCCC-HHHcCCCCEEEEcCcCC-CCC-HHHHHHHHCCCceeCC
Confidence 3332211 12357899999998874 444 6777888888877664
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1 | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.2e-08 Score=98.79 Aligned_cols=143 Identities=20% Similarity=0.369 Sum_probs=95.7
Q ss_pred HHHHHHHCC--CeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHHHHHhhcccCCCC
Q psy9637 19 LILNMNDHG--FTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDDFIDKLVPLLEKG 96 (490)
Q Consensus 19 lA~~L~~~G--~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g 96 (490)
+|+.|.++| ++|++||++++..+...+.|... ....+ .+.+.. +|+||+|||.. .+.++++++.++++++
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~---~~~~~-~~~~~~---~DlvvlavP~~-~~~~~l~~~~~~~~~~ 72 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALELGIID---EASTD-IEAVED---ADLVVLAVPVS-AIEDVLEEIAPYLKPG 72 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSS---EEESH-HHHGGC---CSEEEE-S-HH-HHHHHHHHHHCGS-TT
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCee---eccCC-HhHhcC---CCEEEEcCCHH-HHHHHHHHhhhhcCCC
Confidence 588899999 79999999999988877766531 11222 455555 89999999995 8999999999999999
Q ss_pred CEEEcCCCCChHHHHHHHHHHHHcccccccc-CCCCCc----c----ccccCC-ccCC-CC--CcchHHHHHHHHHhhCC
Q psy9637 97 DIIIDGGNSEYQDTDRRSKALEAKGLLYVGC-GVSGGE----D----GARYGP-SLMP-GG--NPAAWPALKPIFQKLNP 163 (490)
Q Consensus 97 ~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~-~vsGg~----~----~a~~G~-~im~-GG--~~~a~~~v~~ll~~l~~ 163 (490)
.+|+|.+++.-.... ..+.....+..|+.. |+.|.+ . ....|. .+++ +. +++.++.++.+++.+|+
T Consensus 73 ~iv~Dv~SvK~~~~~-~~~~~~~~~~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~~~~~~~~~~~~l~~~~Ga 151 (258)
T PF02153_consen 73 AIVTDVGSVKAPIVE-AMERLLPEGVRFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGEDTDPEALELVEELWEALGA 151 (258)
T ss_dssp SEEEE--S-CHHHHH-HHHHHHTSSGEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTTS-HHHHHHHHHHHHHCT-
T ss_pred cEEEEeCCCCHHHHH-HHHHhcCcccceeecCCCCCCccccchhhcccccCCCeEEEeCCCCChHHHHHHHHHHHHHCCC
Confidence 999999998754444 333344467788877 666652 2 223455 3333 33 34789999999999999
Q ss_pred ceeeCCC
Q psy9637 164 SFETSAP 170 (490)
Q Consensus 164 ~~~~~g~ 170 (490)
+++.+.+
T Consensus 152 ~~~~~~~ 158 (258)
T PF02153_consen 152 RVVEMDA 158 (258)
T ss_dssp EEEE--H
T ss_pred EEEEcCH
Confidence 8887654
|
3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D. |
| >PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=99.02 E-value=7.5e-09 Score=115.92 Aligned_cols=191 Identities=12% Similarity=0.108 Sum_probs=126.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHH-----------HcccC--------CCCeeccCCHHHHHh
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFL-----------ANEAK--------GTNIIGAHSLEELVK 64 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~-----------~~g~~--------~~~i~~~~s~~e~v~ 64 (490)
..+|+|||.|.||..||..++.+||+|++||++++.++... +.+.. -.+++++++++++ +
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~-~ 391 (715)
T PRK11730 313 VKQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDYAGF-E 391 (715)
T ss_pred cceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHHh-c
Confidence 35799999999999999999999999999999998765422 11111 1356667777543 4
Q ss_pred hCCCCcEEEEecCCCchHH-HHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHH----ccccccccCCCCCccccccC
Q psy9637 65 NLKKPRRVMMLVKAGSAVD-DFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEA----KGLLYVGCGVSGGEDGARYG 139 (490)
Q Consensus 65 ~l~~~dvIil~vp~~~~v~-~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~----~gi~~ld~~vsGg~~~a~~G 139 (490)
. +|+||-++|.+..++ +++.++.+.++++.|+...+++.+.+. +.+.+.. -|.||...|-. . .-
T Consensus 392 ~---aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~--la~~~~~p~r~~g~Hff~P~~~-----~-~l 460 (715)
T PRK11730 392 R---VDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTSTISISL--LAKALKRPENFCGMHFFNPVHR-----M-PL 460 (715)
T ss_pred C---CCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHH--HHhhcCCCccEEEEecCCcccc-----c-ce
Confidence 3 999999999988877 555888888888877766555554333 3333322 26666644311 0 00
Q ss_pred CccCCC--CCcchHHHHHHHHHhhCCceeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCH
Q psy9637 140 PSLMPG--GNPAAWPALKPIFQKLNPSFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNY 217 (490)
Q Consensus 140 ~~im~G--G~~~a~~~v~~ll~~l~~~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~ 217 (490)
-=++.| -++++++.+..+++.++...+.+.+.. | . +.|=+ ....+.|++.+.+. |.++
T Consensus 461 VEvv~g~~T~~~~~~~~~~~~~~lgk~pv~v~d~p---G---f----v~nRi---~~~~~~ea~~lv~~-------Ga~~ 520 (715)
T PRK11730 461 VEVIRGEKTSDETIATVVAYASKMGKTPIVVNDCP---G---F----FVNRV---LFPYFAGFSQLLRD-------GADF 520 (715)
T ss_pred EEeeCCCCCCHHHHHHHHHHHHHhCCceEEecCcC---c---h----hHHHH---HHHHHHHHHHHHHc-------CCCH
Confidence 023333 257899999999999999877765532 1 1 22222 22345677777654 7788
Q ss_pred HHHHHHHhc
Q psy9637 218 GGIALMWRG 226 (490)
Q Consensus 218 ~~v~~i~~~ 226 (490)
+++=.+++.
T Consensus 521 e~ID~a~~~ 529 (715)
T PRK11730 521 RQIDKVMEK 529 (715)
T ss_pred HHHHHHHHh
Confidence 877777654
|
|
| >TIGR00465 ilvC ketol-acid reductoisomerase | Back alignment and domain information |
|---|
Probab=99.01 E-value=1e-08 Score=103.80 Aligned_cols=147 Identities=16% Similarity=0.186 Sum_probs=95.4
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCC-hHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRT-TAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~-~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
++|||||+|+||.++|++|.++|++|+++++. +++.+.+.+.|. . ..++.++++. +|+|+++||+..+..
T Consensus 4 kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~~~Gv-----~-~~s~~ea~~~---ADiVvLaVpp~~~~~ 74 (314)
T TIGR00465 4 KTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKATEDGF-----K-VGTVEEAIPQ---ADLIMNLLPDEVQHE 74 (314)
T ss_pred CEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHHHCCC-----E-ECCHHHHHhc---CCEEEEeCCcHhHHH
Confidence 68999999999999999999999998876544 455555554443 2 3467787776 999999999864677
Q ss_pred HHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccc-ccccCCCCCcc---cc--ccCC-ccC-CCC--CcchHHH
Q psy9637 84 DFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLL-YVGCGVSGGED---GA--RYGP-SLM-PGG--NPAAWPA 153 (490)
Q Consensus 84 ~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~-~ld~~vsGg~~---~a--~~G~-~im-~GG--~~~a~~~ 153 (490)
.+++++.+.++++. +|....+..... .+.....++. +.-+|-.-+.. .. ..|. +++ ++- +.++.+.
T Consensus 75 ~v~~ei~~~l~~g~-iVs~aaG~~i~~---~~~~~~~~~~VvrvmPn~p~~~vr~~~~~G~G~~~l~a~~~~~~~~~~~~ 150 (314)
T TIGR00465 75 VYEAEIQPLLKEGK-TLGFSHGFNIHF---VQIVPPKDVDVVMVAPKGPGTLVREEYKEGFGVPTLIAVEQDPTGEAMAI 150 (314)
T ss_pred HHHHHHHhhCCCCc-EEEEeCCccHhh---ccccCCCCCcEEEECCCCCcHHHHHHhhcCCCeeEEEEecCCCCHHHHHH
Confidence 77788988888776 444444332221 1111122322 22345433321 00 2444 443 332 4467889
Q ss_pred HHHHHHhhCCc
Q psy9637 154 LKPIFQKLNPS 164 (490)
Q Consensus 154 v~~ll~~l~~~ 164 (490)
+..+|+.+|..
T Consensus 151 ~~~~~~~iG~~ 161 (314)
T TIGR00465 151 ALAYAKAIGGG 161 (314)
T ss_pred HHHHHHHcCCC
Confidence 99999999985
|
This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway |
| >TIGR02437 FadB fatty oxidation complex, alpha subunit FadB | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.3e-08 Score=111.88 Aligned_cols=191 Identities=13% Similarity=0.111 Sum_probs=127.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH-----------cccC--------CCCeeccCCHHHHHh
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLA-----------NEAK--------GTNIIGAHSLEELVK 64 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~-----------~g~~--------~~~i~~~~s~~e~v~ 64 (490)
.++|+|||.|.||..||..++.+|++|+++|++++.+++..+ .+.. -.+|+++.+++++ +
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~-~ 391 (714)
T TIGR02437 313 VKQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSYAGF-D 391 (714)
T ss_pred cceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHHh-c
Confidence 357999999999999999999999999999999988765322 1110 1346666776543 4
Q ss_pred hCCCCcEEEEecCCCchHH-HHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHH----ccccccccCCCCCccccccC
Q psy9637 65 NLKKPRRVMMLVKAGSAVD-DFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEA----KGLLYVGCGVSGGEDGARYG 139 (490)
Q Consensus 65 ~l~~~dvIil~vp~~~~v~-~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~----~gi~~ld~~vsGg~~~a~~G 139 (490)
+ +|+||-+||.+..++ +++.++.+.++++.|+...+++.+.+. +.+.+.. -|.||...+-.-.-
T Consensus 392 ~---aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasnTS~l~i~~--ia~~~~~p~r~ig~Hff~P~~~~~l------ 460 (714)
T TIGR02437 392 N---VDIVVEAVVENPKVKAAVLAEVEQHVREDAILASNTSTISISL--LAKALKRPENFCGMHFFNPVHRMPL------ 460 (714)
T ss_pred C---CCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHH--HHhhcCCcccEEEEecCCCcccCce------
Confidence 3 899999999988877 556888888888887766555554433 3333322 26677643311000
Q ss_pred CccCCC--CCcchHHHHHHHHHhhCCceeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCH
Q psy9637 140 PSLMPG--GNPAAWPALKPIFQKLNPSFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNY 217 (490)
Q Consensus 140 ~~im~G--G~~~a~~~v~~ll~~l~~~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~ 217 (490)
-=++.| -++++++.+..+++.++...+.+.+.. | .+.|=+ ....+.|++.+.+. |.++
T Consensus 461 vEvv~g~~Ts~~~~~~~~~~~~~lgk~pv~v~d~p---G-------fi~NRl---~~~~~~ea~~l~~e-------G~~~ 520 (714)
T TIGR02437 461 VEVIRGEKSSDETIATVVAYASKMGKTPIVVNDCP---G-------FFVNRV---LFPYFGGFSKLLRD-------GADF 520 (714)
T ss_pred EeecCCCCCCHHHHHHHHHHHHHcCCEEEEeCCcc---c-------chHHHH---HHHHHHHHHHHHHC-------CCCH
Confidence 012333 256899999999999999877766532 1 122222 23345777777654 7888
Q ss_pred HHHHHHHhc
Q psy9637 218 GGIALMWRG 226 (490)
Q Consensus 218 ~~v~~i~~~ 226 (490)
+++=++++.
T Consensus 521 ~~ID~a~~~ 529 (714)
T TIGR02437 521 VRIDKVMEK 529 (714)
T ss_pred HHHHHHHHh
Confidence 888777654
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399. |
| >PRK13403 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.4e-09 Score=107.12 Aligned_cols=88 Identities=20% Similarity=0.282 Sum_probs=71.5
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
++|||||+|.||.++|+||.+.|++|++||+.....+.....+.. ..+++++++. +|+|++++|+. ..+.
T Consensus 17 KtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G~~------v~sl~Eaak~---ADVV~llLPd~-~t~~ 86 (335)
T PRK13403 17 KTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGFE------VMSVSEAVRT---AQVVQMLLPDE-QQAH 86 (335)
T ss_pred CEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHHHcCCE------ECCHHHHHhc---CCEEEEeCCCh-HHHH
Confidence 589999999999999999999999999999875444444443432 3589999987 99999999985 5678
Q ss_pred HH-HhhcccCCCCCEEEcC
Q psy9637 85 FI-DKLVPLLEKGDIIIDG 102 (490)
Q Consensus 85 vl-~~l~~~l~~g~iiId~ 102 (490)
++ +++++.+++|.+++-.
T Consensus 87 V~~~eil~~MK~GaiL~f~ 105 (335)
T PRK13403 87 VYKAEVEENLREGQMLLFS 105 (335)
T ss_pred HHHHHHHhcCCCCCEEEEC
Confidence 87 5799999999977643
|
|
| >PRK06436 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.4e-09 Score=107.89 Aligned_cols=106 Identities=19% Similarity=0.312 Sum_probs=88.8
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
++|||||+|.||..+|++|...|++|.+|||+... .+.. ....+++++++. +|+|++++|..++++.
T Consensus 123 ktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~------~~~~----~~~~~l~ell~~---aDiv~~~lp~t~~T~~ 189 (303)
T PRK06436 123 KSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVN------DGIS----SIYMEPEDIMKK---SDFVLISLPLTDETRG 189 (303)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcc------cCcc----cccCCHHHHHhh---CCEEEECCCCCchhhc
Confidence 58999999999999999998889999999998431 1111 124689998877 9999999999999998
Q ss_pred HH-HhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccc
Q psy9637 85 FI-DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLL 123 (490)
Q Consensus 85 vl-~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~ 123 (490)
++ .+.+..+++|.++|++|.+...+...+.+.+.+..+.
T Consensus 190 li~~~~l~~mk~ga~lIN~sRG~~vd~~aL~~aL~~g~i~ 229 (303)
T PRK06436 190 MINSKMLSLFRKGLAIINVARADVVDKNDMLNFLRNHNDK 229 (303)
T ss_pred CcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCce
Confidence 88 5677889999999999999999999999888876454
|
|
| >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=98.98 E-value=2e-09 Score=100.23 Aligned_cols=110 Identities=19% Similarity=0.344 Sum_probs=89.2
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
++|||||+|.+|..+|+.|..-|.+|++|||+..........+. ...+++++++. +|+|++++|....++.
T Consensus 37 ~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~~------~~~~l~ell~~---aDiv~~~~plt~~T~~ 107 (178)
T PF02826_consen 37 KTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGADEFGV------EYVSLDELLAQ---ADIVSLHLPLTPETRG 107 (178)
T ss_dssp SEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHHTTE------EESSHHHHHHH----SEEEE-SSSSTTTTT
T ss_pred CEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhcccccc------eeeehhhhcch---hhhhhhhhccccccce
Confidence 68999999999999999999999999999999887664444332 36799999998 9999999998888877
Q ss_pred HH-HhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccc
Q psy9637 85 FI-DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLL 123 (490)
Q Consensus 85 vl-~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~ 123 (490)
.+ .+.+..+++|.++|+.+.+.--+...+.+.+++.-+.
T Consensus 108 li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~g~i~ 147 (178)
T PF02826_consen 108 LINAEFLAKMKPGAVLVNVARGELVDEDALLDALESGKIA 147 (178)
T ss_dssp SBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHHTTSEE
T ss_pred eeeeeeeeccccceEEEeccchhhhhhhHHHHHHhhccCc
Confidence 77 5677889999999999998877777788888776544
|
All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... |
| >PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.3e-09 Score=108.54 Aligned_cols=110 Identities=17% Similarity=0.296 Sum_probs=89.8
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
++|||||+|.||..+|++|...|++|.+||++++....+.. .....+++++++. +|+|++++|..++++.
T Consensus 137 ~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~~~~~~-------~~~~~~l~e~l~~---aDvvv~~lPlt~~T~~ 206 (312)
T PRK15469 137 FTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWPGVQS-------FAGREELSAFLSQ---TRVLINLLPNTPETVG 206 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCCCCcee-------ecccccHHHHHhc---CCEEEECCCCCHHHHH
Confidence 58999999999999999999999999999997654221110 1124577888877 9999999999999999
Q ss_pred HH-HhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccc
Q psy9637 85 FI-DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLY 124 (490)
Q Consensus 85 vl-~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ 124 (490)
++ .+.+..+++|.++|+.+-+.--+...+.+.+.+..+..
T Consensus 207 li~~~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~~g~i~g 247 (312)
T PRK15469 207 IINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALDSGKVKG 247 (312)
T ss_pred HhHHHHHhcCCCCcEEEECCCccccCHHHHHHHHhcCCeee
Confidence 88 46778899999999999988888888888888776543
|
|
| >PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.1e-08 Score=112.33 Aligned_cols=190 Identities=12% Similarity=0.058 Sum_probs=124.7
Q ss_pred CCcEEEEcccHHHHHHHHHHH-HCCCeEEEEeCChHHHHHHHH-----------cccC--------CCCeeccCCHHHHH
Q psy9637 4 KGDIGLIGLAVMGQNLILNMN-DHGFTVVAYNRTTAKVDSFLA-----------NEAK--------GTNIIGAHSLEELV 63 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~-~~G~~V~v~dr~~~~~~~l~~-----------~g~~--------~~~i~~~~s~~e~v 63 (490)
.++|+|||.|.||..+|..++ .+|++|++||++++.++...+ .+.. ..+|+.++++++ +
T Consensus 309 i~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~ 387 (708)
T PRK11154 309 VNKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDYRG-F 387 (708)
T ss_pred ccEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCChHH-h
Confidence 368999999999999999999 889999999999886654321 1110 135666777643 3
Q ss_pred hhCCCCcEEEEecCCCchHH-HHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHH----ccccccccCCCCCcccccc
Q psy9637 64 KNLKKPRRVMMLVKAGSAVD-DFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEA----KGLLYVGCGVSGGEDGARY 138 (490)
Q Consensus 64 ~~l~~~dvIil~vp~~~~v~-~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~----~gi~~ld~~vsGg~~~a~~ 138 (490)
++ +|+||-++|....++ +++.++.+.++++.|+...+++.+.+. +.+.+.. -|.||..-|- .. .
T Consensus 388 ~~---aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnTS~l~i~~--la~~~~~p~r~ig~Hff~P~~-----~~-~ 456 (708)
T PRK11154 388 KH---ADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTSSLPIGQ--IAAAAARPEQVIGLHYFSPVE-----KM-P 456 (708)
T ss_pred cc---CCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHH--HHHhcCcccceEEEecCCccc-----cC-c
Confidence 44 999999999987776 555888888888888876655554433 3333322 2666654331 10 0
Q ss_pred CCccCCC--CCcchHHHHHHHHHhhCCceeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Q psy9637 139 GPSLMPG--GNPAAWPALKPIFQKLNPSFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLN 216 (490)
Q Consensus 139 G~~im~G--G~~~a~~~v~~ll~~l~~~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld 216 (490)
---++.| -++++++.+..+++.++...+.+.+.. | ... --.....+.|++.+.+. |++
T Consensus 457 lVEvv~g~~Ts~~~~~~~~~~~~~~gk~pv~v~d~p---G---fi~-------nRl~~~~~~EA~~lv~e-------Gv~ 516 (708)
T PRK11154 457 LVEVIPHAKTSAETIATTVALAKKQGKTPIVVRDGA---G---FYV-------NRILAPYINEAARLLLE-------GEP 516 (708)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHcCCceEEEeccC---c---HHH-------HHHHHHHHHHHHHHHHc-------CCC
Confidence 0023333 367899999999999999776654431 1 111 12234556777777664 777
Q ss_pred HHHHHHHHh
Q psy9637 217 YGGIALMWR 225 (490)
Q Consensus 217 ~~~v~~i~~ 225 (490)
++++=.++.
T Consensus 517 ~~dID~a~~ 525 (708)
T PRK11154 517 IEHIDAALV 525 (708)
T ss_pred HHHHHHHHH
Confidence 777766654
|
|
| >PRK08605 D-lactate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.94 E-value=4.9e-09 Score=107.21 Aligned_cols=108 Identities=19% Similarity=0.203 Sum_probs=88.5
Q ss_pred CcEEEEcccHHHHHHHHHHH-HCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMN-DHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~-~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
++|||||+|.||..+|++|+ ..|.+|.+||+++.... . .. +....+++++++. +|+|++++|....++
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~--~-~~-----~~~~~~l~ell~~---aDvIvl~lP~t~~t~ 215 (332)
T PRK08605 147 LKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFPNAKA--A-TY-----VDYKDTIEEAVEG---ADIVTLHMPATKYNH 215 (332)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCccHhH--H-hh-----ccccCCHHHHHHh---CCEEEEeCCCCcchh
Confidence 68999999999999999994 46889999999875421 1 11 1245689999887 999999999987777
Q ss_pred HHH-HhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccc
Q psy9637 84 DFI-DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLL 123 (490)
Q Consensus 84 ~vl-~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~ 123 (490)
.++ .++++.+++|.++|+++.+...++..+.+.+....+.
T Consensus 216 ~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~ 256 (332)
T PRK08605 216 YLFNADLFKHFKKGAVFVNCARGSLVDTKALLDALDNGLIK 256 (332)
T ss_pred hhcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCee
Confidence 665 4577889999999999999999999999988876554
|
|
| >TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ | Back alignment and domain information |
|---|
Probab=98.94 E-value=3.4e-08 Score=110.43 Aligned_cols=190 Identities=13% Similarity=0.066 Sum_probs=124.3
Q ss_pred CCcEEEEcccHHHHHHHHHHH-HCCCeEEEEeCChHHHHHHHH-----------cccC--------CCCeeccCCHHHHH
Q psy9637 4 KGDIGLIGLAVMGQNLILNMN-DHGFTVVAYNRTTAKVDSFLA-----------NEAK--------GTNIIGAHSLEELV 63 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~-~~G~~V~v~dr~~~~~~~l~~-----------~g~~--------~~~i~~~~s~~e~v 63 (490)
.++|+|||.|.||..+|..++ .+|++|++||++++.++...+ .+.. ..+|+.++++++ +
T Consensus 304 i~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~ 382 (699)
T TIGR02440 304 IKKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDYRG-F 382 (699)
T ss_pred ccEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCChHH-h
Confidence 358999999999999999998 589999999999987654321 1110 135666777754 3
Q ss_pred hhCCCCcEEEEecCCCchHH-HHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHH----ccccccccCCCCCcccccc
Q psy9637 64 KNLKKPRRVMMLVKAGSAVD-DFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEA----KGLLYVGCGVSGGEDGARY 138 (490)
Q Consensus 64 ~~l~~~dvIil~vp~~~~v~-~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~----~gi~~ld~~vsGg~~~a~~ 138 (490)
+. +|+||-++|.+..++ +++.++.+.++++.|+...+++.+.+. +.+.+.. -|.||...|-.-...
T Consensus 383 ~~---adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~--la~~~~~p~r~~g~HffnP~~~~~lV---- 453 (699)
T TIGR02440 383 KD---VDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNTSSLPIGQ--IAAAASRPENVIGLHYFSPVEKMPLV---- 453 (699)
T ss_pred cc---CCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHHH--HHHhcCCcccEEEEecCCccccCceE----
Confidence 43 999999999987777 556888888888877765555544333 3333322 266776543211100
Q ss_pred CCccCCC--CCcchHHHHHHHHHhhCCceeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Q psy9637 139 GPSLMPG--GNPAAWPALKPIFQKLNPSFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLN 216 (490)
Q Consensus 139 G~~im~G--G~~~a~~~v~~ll~~l~~~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld 216 (490)
=++.| -++++++.+..+++.++...+.+.+.. | ..++ -.....+.|++.+.+. |++
T Consensus 454 --Evv~g~~T~~~~~~~~~~~~~~~gk~pv~v~d~p---G---fi~n-------Rl~~~~~~Ea~~l~~~-------G~~ 511 (699)
T TIGR02440 454 --EVIPHAGTSEQTIATTVALAKKQGKTPIVVADKA---G---FYVN-------RILAPYMNEAARLLLE-------GEP 511 (699)
T ss_pred --EEeCCCCCCHHHHHHHHHHHHHcCCeEEEEcccc---c---hHHH-------HHHHHHHHHHHHHHHC-------CCC
Confidence 12332 357899999999999999887765432 1 1111 2234566777777653 677
Q ss_pred HHHHHHHHh
Q psy9637 217 YGGIALMWR 225 (490)
Q Consensus 217 ~~~v~~i~~ 225 (490)
++++=.+++
T Consensus 512 ~~dID~a~~ 520 (699)
T TIGR02440 512 VEHIDKALV 520 (699)
T ss_pred HHHHHHHHH
Confidence 777766653
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog. |
| >TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.4e-08 Score=113.77 Aligned_cols=189 Identities=12% Similarity=0.063 Sum_probs=125.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH-----------cccC--------CCCeeccCCHHHHHh
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLA-----------NEAK--------GTNIIGAHSLEELVK 64 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~-----------~g~~--------~~~i~~~~s~~e~v~ 64 (490)
..+|+|||.|.||..||..++.+|++|++||++++.+++..+ .+.. -.+++++++++++ +
T Consensus 335 i~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~-~ 413 (737)
T TIGR02441 335 VKTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDYSGF-K 413 (737)
T ss_pred ccEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHHh-c
Confidence 357999999999999999999999999999999988665322 1110 1356667777543 3
Q ss_pred hCCCCcEEEEecCCCchHH-HHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHH----ccccccccCCCCCccccccC
Q psy9637 65 NLKKPRRVMMLVKAGSAVD-DFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEA----KGLLYVGCGVSGGEDGARYG 139 (490)
Q Consensus 65 ~l~~~dvIil~vp~~~~v~-~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~----~gi~~ld~~vsGg~~~a~~G 139 (490)
+ +|+||-+||.+..++ +++.++.+.++++.|+...+++.+.+ ++.+.+.. -|.||..-+-.-..
T Consensus 414 ~---aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~--~la~~~~~p~r~ig~Hff~P~~~m~L------ 482 (737)
T TIGR02441 414 N---ADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSALPIK--DIAAVSSRPEKVIGMHYFSPVDKMQL------ 482 (737)
T ss_pred c---CCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHH--HHHhhcCCccceEEEeccCCcccCce------
Confidence 3 899999999988887 55588888888888876555554433 33333322 26676643311000
Q ss_pred CccCCC--CCcchHHHHHHHHHhhCCceeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCH
Q psy9637 140 PSLMPG--GNPAAWPALKPIFQKLNPSFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNY 217 (490)
Q Consensus 140 ~~im~G--G~~~a~~~v~~ll~~l~~~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~ 217 (490)
--++.| -++++++.+..+++.++...+.+++.. | . +.|=+ ....+.|++.+.+. |+++
T Consensus 483 vEvv~g~~Ts~~~~~~~~~~~~~lgk~pv~v~d~p---G---F----i~NRi---~~~~~~ea~~lv~e-------Gv~~ 542 (737)
T TIGR02441 483 LEIITHDGTSKDTLASAVAVGLKQGKVVIVVKDGP---G---F----YTTRC---LGPMLAEVIRLLQE-------GVDP 542 (737)
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHCCCeEEEECCcC---C---c----hHHHH---HHHHHHHHHHHHHc-------CCCH
Confidence 012222 367899999999999999877766532 1 1 11212 23556777777654 7787
Q ss_pred HHHHHHH
Q psy9637 218 GGIALMW 224 (490)
Q Consensus 218 ~~v~~i~ 224 (490)
+++=.++
T Consensus 543 ~~ID~a~ 549 (737)
T TIGR02441 543 KKLDKLT 549 (737)
T ss_pred HHHHHHH
Confidence 7776664
|
Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16). |
| >KOG2380|consensus | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.1e-08 Score=99.05 Aligned_cols=156 Identities=15% Similarity=0.140 Sum_probs=114.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
..+|||||.|.||.-+|..|.++||.|...||+. .+.+.+..+. ...+.+.++++. .+|+|++|+.. ..++
T Consensus 52 tl~IaIIGfGnmGqflAetli~aGh~li~hsRsd--yssaa~~yg~----~~ft~lhdlcer--hpDvvLlctsi-lsie 122 (480)
T KOG2380|consen 52 TLVIAIIGFGNMGQFLAETLIDAGHGLICHSRSD--YSSAAEKYGS----AKFTLLHDLCER--HPDVVLLCTSI-LSIE 122 (480)
T ss_pred ceEEEEEecCcHHHHHHHHHHhcCceeEecCcch--hHHHHHHhcc----cccccHHHHHhc--CCCEEEEEehh-hhHH
Confidence 3579999999999999999999999999999985 4444443322 257889998876 49999999987 4889
Q ss_pred HHHHhhccc-CCCCCEEEcCCCCChHHHHHHHHHHHHcccccccc-CCCCCccccccCC--ccCC----CCC----cchH
Q psy9637 84 DFIDKLVPL-LEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGC-GVSGGEDGARYGP--SLMP----GGN----PAAW 151 (490)
Q Consensus 84 ~vl~~l~~~-l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~-~vsGg~~~a~~G~--~im~----GG~----~~a~ 151 (490)
.++...-+. ++.|++++|..+... ......++.-.+.+..+.+ |+.|.......++ .++. .|+ +|.+
T Consensus 123 kilatypfqrlrrgtlfvdvlSvKe-fek~lfekYLPkdfDIlctHpmfGPksvnh~wqglpfVydkvRig~~~~r~erc 201 (480)
T KOG2380|consen 123 KILATYPFQRLRRGTLFVDVLSVKE-FEKELFEKYLPKDFDILCTHPMFGPKSVNHEWQGLPFVYDKVRIGYAASRPERC 201 (480)
T ss_pred HHHHhcCchhhccceeEeeeeecch-hHHHHHHHhCccccceEeecCCcCCCcCCCccccCceEEEEeeccccccchHHH
Confidence 998877765 889999999987653 3334445555566766666 5555543444333 3322 233 6888
Q ss_pred HHHHHHHHhhCCceeeCC
Q psy9637 152 PALKPIFQKLNPSFETSA 169 (490)
Q Consensus 152 ~~v~~ll~~l~~~~~~~g 169 (490)
|.+.+||...+.+.+++.
T Consensus 202 E~fleIf~cegckmVemS 219 (480)
T KOG2380|consen 202 EFFLEIFACEGCKMVEMS 219 (480)
T ss_pred HHHHHHHHhcCCeEEEEE
Confidence 999999999999877643
|
|
| >PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.1e-08 Score=92.19 Aligned_cols=89 Identities=24% Similarity=0.350 Sum_probs=67.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChH-HHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchH
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTA-KVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAV 82 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~-~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v 82 (490)
.++|+|||.|..|.+.|+||.+.|++|++-.|..+ ..++..+.|.. ..+++|+++. +|+|++.+|+ +..
T Consensus 4 ~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~------v~~~~eAv~~---aDvV~~L~PD-~~q 73 (165)
T PF07991_consen 4 GKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKADGFE------VMSVAEAVKK---ADVVMLLLPD-EVQ 73 (165)
T ss_dssp TSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-E------CCEHHHHHHC----SEEEE-S-H-HHH
T ss_pred CCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCCCe------eccHHHHHhh---CCEEEEeCCh-HHH
Confidence 35899999999999999999999999999988766 56666666653 6799999987 9999999999 466
Q ss_pred HHHH-HhhcccCCCCCEEEcC
Q psy9637 83 DDFI-DKLVPLLEKGDIIIDG 102 (490)
Q Consensus 83 ~~vl-~~l~~~l~~g~iiId~ 102 (490)
.++. +++.|.|++|++++=.
T Consensus 74 ~~vy~~~I~p~l~~G~~L~fa 94 (165)
T PF07991_consen 74 PEVYEEEIAPNLKPGATLVFA 94 (165)
T ss_dssp HHHHHHHHHHHS-TT-EEEES
T ss_pred HHHHHHHHHhhCCCCCEEEeC
Confidence 6777 8899999999988644
|
This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C. |
| >PLN02928 oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=98.84 E-value=3.2e-08 Score=101.71 Aligned_cols=116 Identities=16% Similarity=0.214 Sum_probs=88.9
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHH----Hcc-cC-CCCeeccCCHHHHHhhCCCCcEEEEecCC
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFL----ANE-AK-GTNIIGAHSLEELVKNLKKPRRVMMLVKA 78 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~----~~g-~~-~~~i~~~~s~~e~v~~l~~~dvIil~vp~ 78 (490)
++|||||+|.||..+|++|...|.+|++|||+........ ... .. ........++++++.. +|+|++++|.
T Consensus 160 ktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~---aDiVvl~lPl 236 (347)
T PLN02928 160 KTVFILGYGAIGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGE---ADIVVLCCTL 236 (347)
T ss_pred CEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCChhhhhhhccccccccccccccCcccCHHHHHhh---CCEEEECCCC
Confidence 5899999999999999999999999999999743211110 000 00 0000125688888887 9999999999
Q ss_pred CchHHHHH-HhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccc
Q psy9637 79 GSAVDDFI-DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLL 123 (490)
Q Consensus 79 ~~~v~~vl-~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~ 123 (490)
...++.++ .+.+..+++|.++|+++.+.--+...+.+.+....+.
T Consensus 237 t~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g~i~ 282 (347)
T PLN02928 237 TKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALESGHLG 282 (347)
T ss_pred ChHhhcccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCee
Confidence 88888888 5777889999999999998878888888888876554
|
|
| >PRK13302 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=3.4e-08 Score=98.18 Aligned_cols=110 Identities=14% Similarity=0.185 Sum_probs=81.3
Q ss_pred CcEEEEcccHHHHHHHHHHHHC--CCeEE-EEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCch
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDH--GFTVV-AYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSA 81 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~--G~~V~-v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~ 81 (490)
+||||||+|.||..++.+|.+. +++|. +|||++++.+.+.+.... ...+++++++.+. +|+|++|+|+. .
T Consensus 7 irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~---~~~~~~~eell~~---~D~Vvi~tp~~-~ 79 (271)
T PRK13302 7 LRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRR---PPPVVPLDQLATH---ADIVVEAAPAS-V 79 (271)
T ss_pred eEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCC---CcccCCHHHHhcC---CCEEEECCCcH-H
Confidence 7899999999999999999874 78876 889999998887654221 1246889998765 89999999985 5
Q ss_pred HHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccc
Q psy9637 82 VDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLY 124 (490)
Q Consensus 82 v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ 124 (490)
..++...+ |+.|+.|+..+.....+..++.+.++++|..+
T Consensus 80 h~e~~~~a---L~aGk~Vi~~s~gal~~~~~L~~~A~~~g~~l 119 (271)
T PRK13302 80 LRAIVEPV---LAAGKKAIVLSVGALLRNEDLIDLARQNGGQI 119 (271)
T ss_pred HHHHHHHH---HHcCCcEEEecchhHHhHHHHHHHHHHcCCEE
Confidence 56665544 35676566555544445666667777777654
|
|
| >TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.6e-08 Score=109.45 Aligned_cols=111 Identities=19% Similarity=0.254 Sum_probs=91.2
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
++|||||+|.||..+|++|...|++|.+||+.... +...+.+ +...++++++++. +|+|++++|..+.++.
T Consensus 139 ktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~~~g-----~~~~~~l~ell~~---aDvV~l~lPlt~~T~~ 209 (525)
T TIGR01327 139 KTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYISP-ERAEQLG-----VELVDDLDELLAR---ADFITVHTPLTPETRG 209 (525)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHHhcC-----CEEcCCHHHHHhh---CCEEEEccCCChhhcc
Confidence 58999999999999999999999999999985322 1222222 2235689999887 9999999999988888
Q ss_pred HH-HhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccc
Q psy9637 85 FI-DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLY 124 (490)
Q Consensus 85 vl-~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ 124 (490)
++ .+.+..+++|.++|+++.+..-+...+.+.+....+..
T Consensus 210 li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~g 250 (525)
T TIGR01327 210 LIGAEELAKMKKGVIIVNCARGGIIDEAALYEALEEGHVRA 250 (525)
T ss_pred CcCHHHHhcCCCCeEEEEcCCCceeCHHHHHHHHHcCCeeE
Confidence 88 56777899999999999999889899989988876643
|
This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli. |
| >PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.2e-08 Score=108.54 Aligned_cols=109 Identities=18% Similarity=0.268 Sum_probs=90.3
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
++|||||+|.||..+|++|...|++|.+|||+... +.....+. ..+ +++++++. +|+|++++|..+.++.
T Consensus 141 ktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~~~g~-----~~~-~l~ell~~---aDiV~l~lP~t~~t~~ 210 (526)
T PRK13581 141 KTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYISP-ERAAQLGV-----ELV-SLDELLAR---ADFITLHTPLTPETRG 210 (526)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHHhcCC-----EEE-cHHHHHhh---CCEEEEccCCChHhhc
Confidence 58999999999999999999999999999986432 22222222 233 88998887 9999999999989998
Q ss_pred HH-HhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccc
Q psy9637 85 FI-DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLL 123 (490)
Q Consensus 85 vl-~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~ 123 (490)
++ .+.+..+++|.++|+++.+..-+...+.+.++...+.
T Consensus 211 li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~ 250 (526)
T PRK13581 211 LIGAEELAKMKPGVRIINCARGGIIDEAALAEALKSGKVA 250 (526)
T ss_pred CcCHHHHhcCCCCeEEEECCCCceeCHHHHHHHHhcCCee
Confidence 88 6788889999999999999988888888888876543
|
|
| >PRK00257 erythronate-4-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.74 E-value=3.1e-08 Score=102.59 Aligned_cols=106 Identities=15% Similarity=0.247 Sum_probs=86.2
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCc----
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGS---- 80 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~---- 80 (490)
++|||||+|.||..+|++|...|++|.+||+..... .+. ....+++++++. +|+|.+++|-..
T Consensus 117 ktvGIIG~G~IG~~va~~l~a~G~~V~~~Dp~~~~~-----~~~-----~~~~~l~ell~~---aDiV~lh~Plt~~g~~ 183 (381)
T PRK00257 117 RTYGVVGAGHVGGRLVRVLRGLGWKVLVCDPPRQEA-----EGD-----GDFVSLERILEE---CDVISLHTPLTKEGEH 183 (381)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEECCccccc-----ccC-----ccccCHHHHHhh---CCEEEEeCcCCCCccc
Confidence 589999999999999999999999999999864321 111 135689999887 999999999865
Q ss_pred hHHHHH-HhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccc
Q psy9637 81 AVDDFI-DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLL 123 (490)
Q Consensus 81 ~v~~vl-~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~ 123 (490)
++...+ ++.+..+++|.++|+++.+...+...+.+.+....+.
T Consensus 184 ~T~~li~~~~l~~mk~gailIN~aRG~vVde~AL~~aL~~g~i~ 227 (381)
T PRK00257 184 PTRHLLDEAFLASLRPGAWLINASRGAVVDNQALREALLSGEDL 227 (381)
T ss_pred cccccCCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHhCCCc
Confidence 466666 5677889999999999999988888888888766443
|
|
| >COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.71 E-value=6.1e-08 Score=98.42 Aligned_cols=114 Identities=18% Similarity=0.386 Sum_probs=92.2
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
++|||||+|.+|+.+|.++..-|.+|.+||+...+-.... . ......+++++++. +|+|.+.+|-.+.++.
T Consensus 143 kTvGIiG~G~IG~~va~~l~afgm~v~~~d~~~~~~~~~~-~-----~~~~~~~Ld~lL~~---sDiv~lh~PlT~eT~g 213 (324)
T COG0111 143 KTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYSPRERAGV-D-----GVVGVDSLDELLAE---ADILTLHLPLTPETRG 213 (324)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEECCCCchhhhcc-c-----cceecccHHHHHhh---CCEEEEcCCCCcchhc
Confidence 5899999999999999999999999999999433221111 1 12357899999998 9999999999999998
Q ss_pred HH-HhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccc--cccc
Q psy9637 85 FI-DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLL--YVGC 127 (490)
Q Consensus 85 vl-~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~--~ld~ 127 (490)
++ .+.+..+++|.++|+++-+.--+...+.+.+.+..+. .+|.
T Consensus 214 ~i~~~~~a~MK~gailIN~aRG~vVde~aL~~AL~~G~i~gA~lDV 259 (324)
T COG0111 214 LINAEELAKMKPGAILINAARGGVVDEDALLAALDSGKIAGAALDV 259 (324)
T ss_pred ccCHHHHhhCCCCeEEEECCCcceecHHHHHHHHHcCCcceEEecC
Confidence 88 5677789999999999998888888888888776443 4454
|
|
| >COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.2e-07 Score=96.16 Aligned_cols=109 Identities=18% Similarity=0.313 Sum_probs=90.3
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
+++||||+|++|..+|+++..-|.+|..|||++. -+.-...+. . +.++++++++ +|+|.+.+|....+..
T Consensus 147 ktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~~-~~~~~~~~~-----~-y~~l~ell~~---sDii~l~~Plt~~T~h 216 (324)
T COG1052 147 KTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPN-PEAEKELGA-----R-YVDLDELLAE---SDIISLHCPLTPETRH 216 (324)
T ss_pred CEEEEECCCHHHHHHHHHHhcCCCEEEEECCCCC-hHHHhhcCc-----e-eccHHHHHHh---CCEEEEeCCCChHHhh
Confidence 6899999999999999999988889999999975 221111112 1 3349999988 9999999999999998
Q ss_pred HH-HhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccc
Q psy9637 85 FI-DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLL 123 (490)
Q Consensus 85 vl-~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~ 123 (490)
.+ .+.+..+++|.++|+++-+.-.+...+.+.+++.-+.
T Consensus 217 Lin~~~l~~mk~ga~lVNtaRG~~VDe~ALi~AL~~g~i~ 256 (324)
T COG1052 217 LINAEELAKMKPGAILVNTARGGLVDEQALIDALKSGKIA 256 (324)
T ss_pred hcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCcc
Confidence 88 6677889999999999999888999999998887554
|
|
| >PRK08410 2-hydroxyacid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.4e-07 Score=95.58 Aligned_cols=106 Identities=26% Similarity=0.391 Sum_probs=88.5
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
++|||||+|.+|+.+|+.+..-|.+|.+|||+.... ..+ + ...+++++++. +|+|++++|-.+.++.
T Consensus 146 ktvGIiG~G~IG~~vA~~~~~fgm~V~~~d~~~~~~----~~~-----~-~~~~l~ell~~---sDvv~lh~Plt~~T~~ 212 (311)
T PRK08410 146 KKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSGKNK----NEE-----Y-ERVSLEELLKT---SDIISIHAPLNEKTKN 212 (311)
T ss_pred CEEEEECCCHHHHHHHHHHhhcCCEEEEECCCcccc----ccC-----c-eeecHHHHhhc---CCEEEEeCCCCchhhc
Confidence 589999999999999999999999999999964321 111 1 24588999887 9999999999988888
Q ss_pred HH-HhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccc
Q psy9637 85 FI-DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLL 123 (490)
Q Consensus 85 vl-~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~ 123 (490)
.+ ++.+..+++|.++|+++-+.--+...+.+.++...+.
T Consensus 213 li~~~~~~~Mk~~a~lIN~aRG~vVDe~AL~~AL~~g~i~ 252 (311)
T PRK08410 213 LIAYKELKLLKDGAILINVGRGGIVNEKDLAKALDEKDIY 252 (311)
T ss_pred ccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCeE
Confidence 88 5677889999999999998888888888888876554
|
|
| >PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.7e-07 Score=93.97 Aligned_cols=109 Identities=15% Similarity=0.243 Sum_probs=88.2
Q ss_pred CcEEEEcccHHHHHHHHHHH-HCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMN-DHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~-~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
++|||||+|.+|..+|+++. .-|.+|..||+..... .....+. ...+++++++. +|+|++++|-...++
T Consensus 146 ktvGIiG~G~IG~~va~~l~~~fgm~V~~~~~~~~~~-~~~~~~~------~~~~l~ell~~---sDvv~lh~plt~~T~ 215 (323)
T PRK15409 146 KTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHKE-AEERFNA------RYCDLDTLLQE---SDFVCIILPLTDETH 215 (323)
T ss_pred CEEEEEcccHHHHHHHHHHHhcCCCEEEEECCCCchh-hHHhcCc------EecCHHHHHHh---CCEEEEeCCCChHHh
Confidence 68999999999999999997 7788999999874321 1112222 24589999887 999999999998898
Q ss_pred HHH-HhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccc
Q psy9637 84 DFI-DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLL 123 (490)
Q Consensus 84 ~vl-~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~ 123 (490)
..+ .+.+..+++|.++|+++-+.--+...+.+.+....+.
T Consensus 216 ~li~~~~l~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i~ 256 (323)
T PRK15409 216 HLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIH 256 (323)
T ss_pred hccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCee
Confidence 888 5677889999999999998888888888888876554
|
|
| >PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=8.2e-08 Score=95.74 Aligned_cols=74 Identities=18% Similarity=0.253 Sum_probs=63.3
Q ss_pred CcEEEEccc-HHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 5 GDIGLIGLA-VMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 5 ~~IgiIGlG-~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
++|+|||.| .||.+||.+|.++|++|++|++.. .++++++.+ +|+||+|++.+..++
T Consensus 160 k~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t-------------------~~l~e~~~~---ADIVIsavg~~~~v~ 217 (301)
T PRK14194 160 KHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRS-------------------TDAKALCRQ---ADIVVAAVGRPRLID 217 (301)
T ss_pred CEEEEECCCCccHHHHHHHHHHCCCEEEEECCCC-------------------CCHHHHHhc---CCEEEEecCChhccc
Confidence 589999996 999999999999999999998752 367788877 999999999987666
Q ss_pred HHHHhhcccCCCCCEEEcCCCCC
Q psy9637 84 DFIDKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 84 ~vl~~l~~~l~~g~iiId~s~~~ 106 (490)
.+. +++|.+|||+|...
T Consensus 218 ~~~------ik~GaiVIDvgin~ 234 (301)
T PRK14194 218 ADW------LKPGAVVIDVGINR 234 (301)
T ss_pred Hhh------ccCCcEEEEecccc
Confidence 553 78999999999653
|
|
| >PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.1e-07 Score=99.96 Aligned_cols=108 Identities=23% Similarity=0.326 Sum_probs=90.4
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
++|||||+|.+|+.+|+++..-|.+|.+||+++... .+ .+....+++++++. +|+|.+++|....++.
T Consensus 152 ktvGIiG~G~IG~~vA~~~~~fGm~V~~~d~~~~~~-----~~----~~~~~~~l~ell~~---sDiVslh~Plt~~T~~ 219 (409)
T PRK11790 152 KTLGIVGYGHIGTQLSVLAESLGMRVYFYDIEDKLP-----LG----NARQVGSLEELLAQ---SDVVSLHVPETPSTKN 219 (409)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEECCCcccc-----cC----CceecCCHHHHHhh---CCEEEEcCCCChHHhh
Confidence 589999999999999999999999999999874311 11 12345689999987 9999999999888888
Q ss_pred HH-HhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccc
Q psy9637 85 FI-DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLY 124 (490)
Q Consensus 85 vl-~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ 124 (490)
++ .+.+..+++|.++|+++.+..-+...+.+.+.+..+..
T Consensus 220 li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~g 260 (409)
T PRK11790 220 MIGAEELALMKPGAILINASRGTVVDIDALADALKSGHLAG 260 (409)
T ss_pred ccCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHcCCceE
Confidence 88 56778899999999999998888888888888776543
|
|
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.5e-07 Score=94.17 Aligned_cols=111 Identities=16% Similarity=0.143 Sum_probs=79.1
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
++|+|||+|.||..+|+.|...|++|+++||++++.+.+.+.+.. .....++.+++. .+|+||.++|..-..
T Consensus 152 k~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~~~g~~---~~~~~~l~~~l~---~aDiVint~P~~ii~-- 223 (287)
T TIGR02853 152 SNVMVLGFGRTGMTIARTFSALGARVFVGARSSADLARITEMGLI---PFPLNKLEEKVA---EIDIVINTIPALVLT-- 223 (287)
T ss_pred CEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCe---eecHHHHHHHhc---cCCEEEECCChHHhC--
Confidence 589999999999999999999999999999999887766544432 111233444444 499999999875211
Q ss_pred HHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccC
Q psy9637 85 FIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCG 128 (490)
Q Consensus 85 vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~ 128 (490)
.+.++.++++.+|||.++....+.. +..++.|+..+-+|
T Consensus 224 --~~~l~~~k~~aliIDlas~Pg~tdf---~~Ak~~G~~a~~~~ 262 (287)
T TIGR02853 224 --ADVLSKLPKHAVIIDLASKPGGTDF---EYAKKRGIKALLAP 262 (287)
T ss_pred --HHHHhcCCCCeEEEEeCcCCCCCCH---HHHHHCCCEEEEeC
Confidence 3445567889999999985433222 45566777665444
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >PRK06487 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=3.1e-07 Score=93.31 Aligned_cols=104 Identities=16% Similarity=0.251 Sum_probs=87.3
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
++|||||+|.+|+.+|+.+..-|.+|.+|||.... ... ...+++++++. +|+|++++|-.+.++.
T Consensus 149 ktvgIiG~G~IG~~vA~~l~~fgm~V~~~~~~~~~------~~~------~~~~l~ell~~---sDiv~l~lPlt~~T~~ 213 (317)
T PRK06487 149 KTLGLLGHGELGGAVARLAEAFGMRVLIGQLPGRP------ARP------DRLPLDELLPQ---VDALTLHCPLTEHTRH 213 (317)
T ss_pred CEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCCc------ccc------cccCHHHHHHh---CCEEEECCCCChHHhc
Confidence 58999999999999999999999999999986321 011 13588998887 9999999999888888
Q ss_pred HH-HhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccc
Q psy9637 85 FI-DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLL 123 (490)
Q Consensus 85 vl-~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~ 123 (490)
.+ .+.+..+++|.++|+++-+.--+...+.+.+.+..+.
T Consensus 214 li~~~~~~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i~ 253 (317)
T PRK06487 214 LIGARELALMKPGALLINTARGGLVDEQALADALRSGHLG 253 (317)
T ss_pred CcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCee
Confidence 88 6677889999999999998888888888888876554
|
|
| >PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.3e-07 Score=97.67 Aligned_cols=105 Identities=18% Similarity=0.265 Sum_probs=84.1
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCch---
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSA--- 81 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~--- 81 (490)
++|||||+|.||+.+|++|..-|.+|.+||+.... . +.. ....+++++++. +|+|++.+|-...
T Consensus 117 ktvGIIG~G~IG~~vA~~l~a~G~~V~~~dp~~~~--~----~~~----~~~~~L~ell~~---sDiI~lh~PLt~~g~~ 183 (378)
T PRK15438 117 RTVGIVGVGNVGRRLQARLEALGIKTLLCDPPRAD--R----GDE----GDFRSLDELVQE---ADILTFHTPLFKDGPY 183 (378)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCcccc--c----ccc----cccCCHHHHHhh---CCEEEEeCCCCCCccc
Confidence 58999999999999999999999999999975321 0 110 125689999887 8999999997653
Q ss_pred -HHHHH-HhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccc
Q psy9637 82 -VDDFI-DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGL 122 (490)
Q Consensus 82 -v~~vl-~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi 122 (490)
+...+ ++.+..+++|.++|+.+-+.--+...+.+.+++..+
T Consensus 184 ~T~~li~~~~l~~mk~gailIN~aRG~vVDe~AL~~aL~~g~~ 226 (378)
T PRK15438 184 KTLHLADEKLIRSLKPGAILINACRGAVVDNTALLTCLNEGQK 226 (378)
T ss_pred ccccccCHHHHhcCCCCcEEEECCCchhcCHHHHHHHHHhCCC
Confidence 66666 567788999999999999888888888888876544
|
|
| >PRK06932 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.3e-07 Score=94.11 Aligned_cols=105 Identities=18% Similarity=0.288 Sum_probs=87.6
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
++|||||+|.+|+.+|+.+..-|.+|.+||+.+.. .. .. ...+++++++. +|+|++++|-.+.++.
T Consensus 148 ktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~--~~---~~------~~~~l~ell~~---sDiv~l~~Plt~~T~~ 213 (314)
T PRK06932 148 STLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGAS--VC---RE------GYTPFEEVLKQ---ADIVTLHCPLTETTQN 213 (314)
T ss_pred CEEEEECCCHHHHHHHHHHhcCCCEEEEECCCccc--cc---cc------ccCCHHHHHHh---CCEEEEcCCCChHHhc
Confidence 58999999999999999999999999999986421 10 00 24589999887 9999999999888888
Q ss_pred HH-HhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccc
Q psy9637 85 FI-DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLL 123 (490)
Q Consensus 85 vl-~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~ 123 (490)
.+ .+.+..+++|.++|+++-+.--+...+.+.+.+..+.
T Consensus 214 li~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~~g~i~ 253 (314)
T PRK06932 214 LINAETLALMKPTAFLINTGRGPLVDEQALLDALENGKIA 253 (314)
T ss_pred ccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCcc
Confidence 88 6677889999999999998888888888888876554
|
|
| >PRK13304 L-aspartate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.56 E-value=5.6e-07 Score=89.20 Aligned_cols=109 Identities=17% Similarity=0.195 Sum_probs=76.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHHC--CCe-EEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCc
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDH--GFT-VVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGS 80 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~--G~~-V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~ 80 (490)
||||||||+|.||..++..|.+. +++ +.++|+++++.+.+.+... ...++++++++.. +|+|++|+|+.
T Consensus 1 mmrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~~----~~~~~~~~ell~~---~DvVvi~a~~~- 72 (265)
T PRK13304 1 MLKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKTG----AKACLSIDELVED---VDLVVECASVN- 72 (265)
T ss_pred CCEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhcC----CeeECCHHHHhcC---CCEEEEcCChH-
Confidence 36999999999999999999876 455 5579999999888765321 2357889988754 99999999874
Q ss_pred hHHHHHHhhcccCCCCCEEEcCCCC---ChHHHHHHHHHHHHcccc
Q psy9637 81 AVDDFIDKLVPLLEKGDIIIDGGNS---EYQDTDRRSKALEAKGLL 123 (490)
Q Consensus 81 ~v~~vl~~l~~~l~~g~iiId~s~~---~~~~~~~~~~~l~~~gi~ 123 (490)
.+.+++..++ +.|.-++..+.. .....+++.+.+++.|..
T Consensus 73 ~~~~~~~~al---~~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g~~ 115 (265)
T PRK13304 73 AVEEVVPKSL---ENGKDVIIMSVGALADKELFLKLYKLAKENNCK 115 (265)
T ss_pred HHHHHHHHHH---HcCCCEEEEchHHhcCHHHHHHHHHHHHHcCCE
Confidence 6666665544 345545555542 333444555666666754
|
|
| >PRK06141 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.6e-07 Score=95.34 Aligned_cols=114 Identities=16% Similarity=0.157 Sum_probs=83.0
Q ss_pred CcEEEEcccHHHHHHHHHHHH--CCCeEEEEeCChHHHHHHHHcccC-CCCeeccCCHHHHHhhCCCCcEEEEecCCCch
Q psy9637 5 GDIGLIGLAVMGQNLILNMND--HGFTVVAYNRTTAKVDSFLANEAK-GTNIIGAHSLEELVKNLKKPRRVMMLVKAGSA 81 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~--~G~~V~v~dr~~~~~~~l~~~g~~-~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~ 81 (490)
.+|+|||+|.||..++..+.. ...+|.+|||++++.+.|.+.... +..+..+.++++++.+ +|+|++++|...+
T Consensus 126 ~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~~~~~~~av~~---aDIVi~aT~s~~p 202 (314)
T PRK06141 126 SRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGFDAEVVTDLEAAVRQ---ADIISCATLSTEP 202 (314)
T ss_pred ceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEeCCHHHHHhc---CCEEEEeeCCCCC
Confidence 589999999999999885553 457899999999999998875321 1135567889988876 9999888887532
Q ss_pred HHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccccccc
Q psy9637 82 VDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGC 127 (490)
Q Consensus 82 v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~ 127 (490)
++.. ..+++|. +||+.++.+...++....+.+++..|+|-
T Consensus 203 ---vl~~--~~l~~g~-~i~~ig~~~~~~~El~~~~~~~a~~~vD~ 242 (314)
T PRK06141 203 ---LVRG--EWLKPGT-HLDLVGNFTPDMRECDDEAIRRASVYVDT 242 (314)
T ss_pred ---EecH--HHcCCCC-EEEeeCCCCcccccCCHHHHhcCcEEEcC
Confidence 2321 3467887 66766666666666666666666667775
|
|
| >PLN02306 hydroxypyruvate reductase | Back alignment and domain information |
|---|
Probab=98.51 E-value=6.5e-07 Score=93.09 Aligned_cols=116 Identities=15% Similarity=0.275 Sum_probs=88.4
Q ss_pred CcEEEEcccHHHHHHHHHHH-HCCCeEEEEeCChHH-HHHHHH-cc-------cCCCCeeccCCHHHHHhhCCCCcEEEE
Q psy9637 5 GDIGLIGLAVMGQNLILNMN-DHGFTVVAYNRTTAK-VDSFLA-NE-------AKGTNIIGAHSLEELVKNLKKPRRVMM 74 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~-~~G~~V~v~dr~~~~-~~~l~~-~g-------~~~~~i~~~~s~~e~v~~l~~~dvIil 74 (490)
++|||||+|.+|+.+|++|. .-|.+|.+||+++.. .+.+.. .+ .....+....+++++++. +|+|++
T Consensus 166 ktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~---sDiV~l 242 (386)
T PLN02306 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLRE---ADVISL 242 (386)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhh---CCEEEE
Confidence 58999999999999999986 679999999998642 221111 11 000011224588999887 999999
Q ss_pred ecCCCchHHHHH-HhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccc
Q psy9637 75 LVKAGSAVDDFI-DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLL 123 (490)
Q Consensus 75 ~vp~~~~v~~vl-~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~ 123 (490)
++|-...++..+ .+.+..+++|.++|+++-+.--+...+.+.++...+.
T Consensus 243 h~Plt~~T~~lin~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~sg~i~ 292 (386)
T PLN02306 243 HPVLDKTTYHLINKERLALMKKEAVLVNASRGPVIDEVALVEHLKANPMF 292 (386)
T ss_pred eCCCChhhhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCee
Confidence 999988888888 5677889999999999998878888888888776554
|
|
| >COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.47 E-value=5.5e-07 Score=89.31 Aligned_cols=107 Identities=22% Similarity=0.238 Sum_probs=81.9
Q ss_pred ceeecCCCCcchhHHhhhhHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhccCcchhHHHHHHHHHhcccCC-CCCc
Q psy9637 349 CDWVGEQGAGHFVKMVHNGIEYGDMQLICEAYHLMTGALGMSHDEMSAVFEDWNKGELDSFLIEITKDILKFKDT-DGAP 427 (490)
Q Consensus 349 ~~~~g~~g~gh~vkmvhngiey~~m~~~~E~~~~~~~~~~~~~~~~~~~~~~w~~g~~~s~l~~~~~~~~~~~~~-~~~~ 427 (490)
+.|+|+.|+||.+||++|-+--+.|++++|++.|.++ +|+ |...+++.-++|+-+||.+|.-..-.-+.|- .+ .
T Consensus 158 i~~~G~~G~G~~~Kl~nn~l~~~~~~a~aEAl~la~k-~Gl---d~~~~~~vi~~~~~~s~~~e~~~~~m~~~~~~p~-F 232 (286)
T COG2084 158 IVHVGPVGAGQAAKLANNILLAGNIAALAEALALAEK-AGL---DPDVVLEVISGGAAGSWILENYGPRMLEGDFSPG-F 232 (286)
T ss_pred eEEECCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCC---CHHHHHHHHhccccCChHHHhhcchhhcCCCCcc-h
Confidence 5689999999999999999999999999999999998 898 6788888888888899998875432222232 22 2
Q ss_pred chhhhccccCCCcchHHHHHHHHhcCCCchhhHHHHHHH
Q psy9637 428 LVEKIKDYAGQKGTGKWTAISALDYGVPVTLIGESVFSR 466 (490)
Q Consensus 428 ~l~~i~~~~~~~g~g~w~~~~a~~~~~p~~~i~~a~~~r 466 (490)
.++.... .-+-...+|.+.++|+|+.+.+....
T Consensus 233 ~v~~~~K------Dl~la~~~A~~~g~~lP~~~~~~~ly 265 (286)
T COG2084 233 AVDLMLK------DLGLALDAAKELGAPLPLTALAAELY 265 (286)
T ss_pred hHHHHHH------HHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 3333332 23366788999999999887776553
|
|
| >PRK06444 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.1e-05 Score=76.33 Aligned_cols=114 Identities=15% Similarity=0.151 Sum_probs=81.6
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
|+|+|||. |.||..++..|.++||.|++ . ++|+||+|+|.. .+.
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~g~~v~~-------------------------------~---~~DlVilavPv~-~~~ 45 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDNGLGVYI-------------------------------K---KADHAFLSVPID-AAL 45 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhCCCEEEE-------------------------------C---CCCEEEEeCCHH-HHH
Confidence 48999998 99999999999999999851 1 289999999995 777
Q ss_pred HHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccccccc-CCCCCccccccC---CccCC--CCCcchHHHHHHH
Q psy9637 84 DFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGC-GVSGGEDGARYG---PSLMP--GGNPAAWPALKPI 157 (490)
Q Consensus 84 ~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~-~vsGg~~~a~~G---~~im~--GG~~~a~~~v~~l 157 (490)
++++++. .+|+|.+++...- . +.+..|+.. |++| +..+..+ ..+++ ..++++.+.++.+
T Consensus 46 ~~i~~~~------~~v~Dv~SvK~~i----~----~~~~~~vg~HPMfG-p~~a~~~lf~~~iv~~~~~~~~~~~~~~~l 110 (197)
T PRK06444 46 NYIESYD------NNFVEISSVKWPF----K----KYSGKIVSIHPLFG-PMSYNDGVHRTVIFINDISRDNYLNEINEM 110 (197)
T ss_pred HHHHHhC------CeEEeccccCHHH----H----HhcCCEEecCCCCC-CCcCcccccceEEEECCCCCHHHHHHHHHH
Confidence 7777664 3799999987421 1 124467777 6665 5555443 33333 2344667888999
Q ss_pred HHhhCCceeeCCC
Q psy9637 158 FQKLNPSFETSAP 170 (490)
Q Consensus 158 l~~l~~~~~~~g~ 170 (490)
++ +.+++.+.+
T Consensus 111 ~~--G~~~~~~t~ 121 (197)
T PRK06444 111 FR--GYHFVEMTA 121 (197)
T ss_pred Hc--CCEEEEeCH
Confidence 88 777766655
|
|
| >PF14833 NAD_binding_11: NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase; PDB: 3OBB_A 3Q3C_A 2UYY_D 3G0O_A 1WP4_A 2CVZ_B 1YB4_A 3PDU_G 2I9P_D 2GF2_D | Back alignment and domain information |
|---|
Probab=98.46 E-value=8.3e-07 Score=77.39 Aligned_cols=99 Identities=21% Similarity=0.256 Sum_probs=73.4
Q ss_pred CCcchhHHhhhhHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhccCcchhHHHHHHHH--HhcccCCCCCcchhhhc
Q psy9637 356 GAGHFVKMVHNGIEYGDMQLICEAYHLMTGALGMSHDEMSAVFEDWNKGELDSFLIEITKD--ILKFKDTDGAPLVEKIK 433 (490)
Q Consensus 356 g~gh~vkmvhngiey~~m~~~~E~~~~~~~~~~~~~~~~~~~~~~w~~g~~~s~l~~~~~~--~~~~~~~~~~~~l~~i~ 433 (490)
|+|+.+|+++|-+.++++++++|++.+.++ .|+ |..++++.-+.++..||.++.-.. ++. .+.+....++.+.
T Consensus 1 G~g~~~Kl~~N~l~~~~~~~~aEa~~la~~-~Gl---d~~~~~~vl~~~~~~s~~~~~~~~~~~~~-~~~~~~f~l~~~~ 75 (122)
T PF14833_consen 1 GAGQAMKLANNLLIAANMAALAEALALAEK-AGL---DPEQLLDVLSAGSGGSWMLKNRAPRMILN-GDFDPGFSLDLAR 75 (122)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTS----HHHHHHHHHTSTTHBHHHHHHHHHHHHT-TTTCSSSBHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCC---CHHHHHHHHccCCcCchHHHhhhhhhhhc-ccCCccchhHhhc
Confidence 789999999999999999999999999998 898 778888888888888888875543 443 2322223455554
Q ss_pred cccCCCcchHHHHHHHHhcCCCchhhHHHHHH
Q psy9637 434 DYAGQKGTGKWTAISALDYGVPVTLIGESVFS 465 (490)
Q Consensus 434 ~~~~~~g~g~w~~~~a~~~~~p~~~i~~a~~~ 465 (490)
.- -+=.++.|.+.|+|+|+...+...
T Consensus 76 KD------l~l~~~~a~~~g~~~p~~~~~~~~ 101 (122)
T PF14833_consen 76 KD------LRLALDLAKEAGVPLPLGSAARQL 101 (122)
T ss_dssp HH------HHHHHHHHHHTT---HHHHHHHHH
T ss_pred cH------HHHHHHHHHHcCCCCHHHHHHHHH
Confidence 42 337888999999999998887644
|
... |
| >COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.46 E-value=6e-06 Score=79.09 Aligned_cols=187 Identities=10% Similarity=0.090 Sum_probs=125.2
Q ss_pred CCcEEEEcccHH--------------------HHHHHHHHHHCCCeEEEEeCChH-----HHHHHHHcccCCCCeeccCC
Q psy9637 4 KGDIGLIGLAVM--------------------GQNLILNMNDHGFTVVAYNRTTA-----KVDSFLANEAKGTNIIGAHS 58 (490)
Q Consensus 4 ~~~IgiIGlG~M--------------------G~~lA~~L~~~G~~V~v~dr~~~-----~~~~l~~~g~~~~~i~~~~s 58 (490)
+|||.|.|.|+- |..||..++++||+|++.|+|.+ ..+++.+.| ++.+++
T Consensus 1 ~mkv~vygagnq~ly~~~l~~pek~ggE~PyGGa~mAiefAeAGHDVVLaePn~d~~dd~~w~~vedAG-----V~vv~d 75 (340)
T COG4007 1 MMKVAVYGAGNQRLYLEQLNLPEKYGGEPPYGGARMAIEFAEAGHDVVLAEPNRDIMDDEHWKRVEDAG-----VEVVSD 75 (340)
T ss_pred CceEEEEcCCccchhHHhcCChhhhCCCCCCCchHHHHHHHHcCCcEEeecCCccccCHHHHHHHHhcC-----cEEecC
Confidence 368999998864 67799999999999999987654 344444444 446778
Q ss_pred HHHHHhhCCCCcEEEEecCCCchHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHH-HHHHH----cccc-ccccCCCCC
Q psy9637 59 LEELVKNLKKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRS-KALEA----KGLL-YVGCGVSGG 132 (490)
Q Consensus 59 ~~e~v~~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~-~~l~~----~gi~-~ld~~vsGg 132 (490)
-.+.++. .++.++-+|-+..+-.+..+|+++++.|.+|.+..|++|...-... ..++. -|+. +-.++|-|.
T Consensus 76 D~eaa~~---~Ei~VLFTPFGk~T~~Iarei~~hvpEgAVicnTCT~sp~vLy~~LE~~Lr~kR~dVGvssmHPAgvPGt 152 (340)
T COG4007 76 DAEAAEH---GEIHVLFTPFGKATFGIAREILEHVPEGAVICNTCTVSPVVLYYSLEGELRTKREDVGVSSMHPAGVPGT 152 (340)
T ss_pred chhhhhc---ceEEEEecccchhhHHHHHHHHhhCcCCcEecccccCchhHHHHHhhhhhcCchhhcCccccCCCCCCCC
Confidence 8888877 8999999999999999999999999999999999998876554433 22322 1443 333445444
Q ss_pred ccccccCCccCCC--------CCcchHHHHHHHHHhhCCceeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9637 133 EDGARYGPSLMPG--------GNPAAWPALKPIFQKLNPSFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLM 204 (490)
Q Consensus 133 ~~~a~~G~~im~G--------G~~~a~~~v~~ll~~l~~~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la 204 (490)
|. +|.-+..| ..++.++++.++.++.|...+...+. .-..+-....++.+..+.+..+-+..+
T Consensus 153 p~---h~~yviagr~t~g~elATeEQi~r~velaes~Gk~~yv~pad------v~s~VaDmg~lvtav~l~gvldyy~Vg 223 (340)
T COG4007 153 PQ---HGHYVIAGRSTEGKELATEEQIERCVELAESTGKEVYVLPAD------VVSAVADMGVLVTAVALSGVLDYYYVG 223 (340)
T ss_pred CC---CceEEEeccCCCceeeccHHHHHHHHHHHHhcCCceEecCHH------HHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 43 22222211 24577889999999999877654331 112233333445555555655555555
Q ss_pred HHH
Q psy9637 205 RQA 207 (490)
Q Consensus 205 ~~a 207 (490)
++.
T Consensus 224 ~qI 226 (340)
T COG4007 224 TQI 226 (340)
T ss_pred HHH
Confidence 543
|
|
| >KOG0069|consensus | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.3e-06 Score=88.14 Aligned_cols=107 Identities=17% Similarity=0.330 Sum_probs=89.1
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
++|||+|+|++|..+|++|..-|..+.-++|++...+...+.+.. ..+..+++.+ +|+|++++|..+.+..
T Consensus 163 K~vgilG~G~IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~~~~~~~------~~d~~~~~~~---sD~ivv~~pLt~~T~~ 233 (336)
T KOG0069|consen 163 KTVGILGLGRIGKAIAKRLKPFGCVILYHSRTQLPPEEAYEYYAE------FVDIEELLAN---SDVIVVNCPLTKETRH 233 (336)
T ss_pred CEEEEecCcHHHHHHHHhhhhccceeeeecccCCchhhHHHhccc------ccCHHHHHhh---CCEEEEecCCCHHHHH
Confidence 589999999999999999999995555567776666666555442 5688888887 9999999999999999
Q ss_pred HH-HhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHc
Q psy9637 85 FI-DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAK 120 (490)
Q Consensus 85 vl-~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~ 120 (490)
++ .+++..+++|.+||+++-+..-+.+...+.+++.
T Consensus 234 liNk~~~~~mk~g~vlVN~aRG~iide~~l~eaL~sG 270 (336)
T KOG0069|consen 234 LINKKFIEKMKDGAVLVNTARGAIIDEEALVEALKSG 270 (336)
T ss_pred HhhHHHHHhcCCCeEEEeccccccccHHHHHHHHhcC
Confidence 99 6788899999999999998888888777777654
|
|
| >PRK15059 tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=7.2e-07 Score=89.69 Aligned_cols=105 Identities=14% Similarity=0.108 Sum_probs=77.3
Q ss_pred ceeecCCCCcchhHHhhhhHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhccCcchhHHHHHHHHHhcccCCCCCcc
Q psy9637 349 CDWVGEQGAGHFVKMVHNGIEYGDMQLICEAYHLMTGALGMSHDEMSAVFEDWNKGELDSFLIEITKDILKFKDTDGAPL 428 (490)
Q Consensus 349 ~~~~g~~g~gh~vkmvhngiey~~m~~~~E~~~~~~~~~~~~~~~~~~~~~~w~~g~~~s~l~~~~~~~~~~~~~~~~~~ 428 (490)
+.|+|+.|+|+.+|+|||.+-+++|++++|++.+.++ .|+ |..++++..+.+..+||.++.-...+...|-+....
T Consensus 156 ~~~~G~~G~g~~~Kl~~N~l~~~~~~a~~Ea~~la~~-~Gl---d~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~f~ 231 (292)
T PRK15059 156 ITLVGGNGDGQTCKVANQIIVALNIEAVSEALLFASK-AGA---DPVRVRQALMGGFASSRILEVHGERMIKRTFNPGFK 231 (292)
T ss_pred cEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCC---CHHHHHHHHHcCcccCHHHHhhchhhhcCCCCCCCc
Confidence 5689999999999999999999999999999999997 898 556666666777788998876654333222111122
Q ss_pred hhhhccccCCCcchHHHHHHHHhcCCCchhhHHHH
Q psy9637 429 VEKIKDYAGQKGTGKWTAISALDYGVPVTLIGESV 463 (490)
Q Consensus 429 l~~i~~~~~~~g~g~w~~~~a~~~~~p~~~i~~a~ 463 (490)
++.... .-+-.++.|.+.|+|+|+...+.
T Consensus 232 l~~~~K------Dl~l~~~~a~~~g~~~p~~~~~~ 260 (292)
T PRK15059 232 IALHQK------DLNLALQSAKALALNLPNTATCQ 260 (292)
T ss_pred hHHHHH------HHHHHHHHHHHcCCCChHHHHHH
Confidence 333332 33477888999999999766544
|
|
| >PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1 | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.4e-06 Score=78.46 Aligned_cols=96 Identities=18% Similarity=0.224 Sum_probs=73.8
Q ss_pred EEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccC---CC---Ce---eccCCHHHHHhhCCCCcEEEEecC
Q psy9637 7 IGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAK---GT---NI---IGAHSLEELVKNLKKPRRVMMLVK 77 (490)
Q Consensus 7 IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~---~~---~i---~~~~s~~e~v~~l~~~dvIil~vp 77 (490)
|.|+|.|.||..+|..|.++|++|+++.|++ ..+.+.+.+.. .. .+ ....+..+... .+|+||+|++
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~D~viv~vK 76 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAG---PYDLVIVAVK 76 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHS---TESEEEE-SS
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHhhhheeEEEEecccceecccccccCcchhccC---CCcEEEEEec
Confidence 7899999999999999999999999999998 78877765543 00 01 11122212223 4899999999
Q ss_pred CCchHHHHHHhhcccCCCCCEEEcCCCCCh
Q psy9637 78 AGSAVDDFIDKLVPLLEKGDIIIDGGNSEY 107 (490)
Q Consensus 78 ~~~~v~~vl~~l~~~l~~g~iiId~s~~~~ 107 (490)
+. +++++++.+.+.+.++..|+-..|+..
T Consensus 77 a~-~~~~~l~~l~~~~~~~t~iv~~qNG~g 105 (151)
T PF02558_consen 77 AY-QLEQALQSLKPYLDPNTTIVSLQNGMG 105 (151)
T ss_dssp GG-GHHHHHHHHCTGEETTEEEEEESSSSS
T ss_pred cc-chHHHHHHHhhccCCCcEEEEEeCCCC
Confidence 95 899999999999999989999989864
|
1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B .... |
| >PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=7e-07 Score=89.26 Aligned_cols=73 Identities=19% Similarity=0.219 Sum_probs=61.1
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCeEEEEe-CChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchH
Q psy9637 5 GDIGLIG-LAVMGQNLILNMNDHGFTVVAYN-RTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAV 82 (490)
Q Consensus 5 ~~IgiIG-lG~MG~~lA~~L~~~G~~V~v~d-r~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v 82 (490)
++|+||| .|.||.+||.+|.++|++|++|+ |++ ++++++++ +|+|++|++.+..+
T Consensus 159 k~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~--------------------~l~e~~~~---ADIVIsavg~~~~v 215 (296)
T PRK14188 159 LNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTR--------------------DLPAVCRR---ADILVAAVGRPEMV 215 (296)
T ss_pred CEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCC--------------------CHHHHHhc---CCEEEEecCChhhc
Confidence 5899999 99999999999999999999995 553 35666666 89999999998665
Q ss_pred HHHHHhhcccCCCCCEEEcCCCCC
Q psy9637 83 DDFIDKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 83 ~~vl~~l~~~l~~g~iiId~s~~~ 106 (490)
+.++ +++|.+|||+|...
T Consensus 216 ~~~~------lk~GavVIDvGin~ 233 (296)
T PRK14188 216 KGDW------IKPGATVIDVGINR 233 (296)
T ss_pred chhe------ecCCCEEEEcCCcc
Confidence 5543 78999999999753
|
|
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.6e-06 Score=87.30 Aligned_cols=109 Identities=17% Similarity=0.173 Sum_probs=77.3
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
.+++|||.|.+|..++..|.+.|.+|+++||++++.+.....+.. .....++.+.+. .+|+||.++|...
T Consensus 153 ~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~~G~~---~~~~~~l~~~l~---~aDiVI~t~p~~~---- 222 (296)
T PRK08306 153 SNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARITEMGLS---PFHLSELAEEVG---KIDIIFNTIPALV---- 222 (296)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCe---eecHHHHHHHhC---CCCEEEECCChhh----
Confidence 689999999999999999999999999999998887666554432 111234444444 4999999998642
Q ss_pred HHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccc
Q psy9637 85 FIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVG 126 (490)
Q Consensus 85 vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld 126 (490)
+-++.+..++++.+|||.++.... +.- +..+++|+..+.
T Consensus 223 i~~~~l~~~~~g~vIIDla~~pgg-td~--~~a~~~Gv~~~~ 261 (296)
T PRK08306 223 LTKEVLSKMPPEALIIDLASKPGG-TDF--EYAEKRGIKALL 261 (296)
T ss_pred hhHHHHHcCCCCcEEEEEccCCCC-cCe--eehhhCCeEEEE
Confidence 124455667899999999875433 221 234556665544
|
|
| >KOG2304|consensus | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.8e-06 Score=81.32 Aligned_cols=198 Identities=13% Similarity=0.143 Sum_probs=117.3
Q ss_pred CCCCCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHc-----------ccCC-------------CCeecc
Q psy9637 1 MAAKGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLAN-----------EAKG-------------TNIIGA 56 (490)
Q Consensus 1 M~~~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~-----------g~~~-------------~~i~~~ 56 (490)
|..++.|+|||.|.||+.+|+--+..|++|.++|++++++.+..+. .... .++..+
T Consensus 8 ~~~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~~ 87 (298)
T KOG2304|consen 8 MAEIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKTS 87 (298)
T ss_pred cccccceEEEcccccchhHHHHHHhcCCceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHc
Confidence 3455789999999999999999999999999999998876654321 1000 123445
Q ss_pred CCHHHHHhhCCCCcEEEEecCCCchHHH-HHHhhcccCCCCCEEEcCCCCChHHHHHHHHHH----HHcccccccc-CCC
Q psy9637 57 HSLEELVKNLKKPRRVMMLVKAGSAVDD-FIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKAL----EAKGLLYVGC-GVS 130 (490)
Q Consensus 57 ~s~~e~v~~l~~~dvIil~vp~~~~v~~-vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l----~~~gi~~ld~-~vs 130 (490)
++..+++.+ +|+||-++-....++. ++.++-...++..++.. .|++..-+ ++...+ .-.|.||+.. ||.
T Consensus 88 tnv~~~v~d---adliiEAivEn~diK~~lF~~l~~~ak~~~il~t-NTSSl~lt-~ia~~~~~~srf~GlHFfNPvPvM 162 (298)
T KOG2304|consen 88 TNVSDAVSD---ADLIIEAIVENLDIKRKLFKDLDKIAKSSTILAT-NTSSLSLT-DIASATQRPSRFAGLHFFNPVPVM 162 (298)
T ss_pred CCHHHhhhh---hHHHHHHHHHhHHHHHHHHHHHHhhcccceEEee-cccceeHH-HHHhhccChhhhceeeccCCchhH
Confidence 666666665 7888776655444442 33445444545555543 33332222 222222 2247887754 443
Q ss_pred CCccccccCCccCCCCCcchHHHHHHHHHhhCCceeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9637 131 GGEDGARYGPSLMPGGNPAAWPALKPIFQKLNPSFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEI 210 (490)
Q Consensus 131 Gg~~~a~~G~~im~GG~~~a~~~v~~ll~~l~~~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~ 210 (490)
--.+-.+.- --+++.|..+..+-+.++...+.+-... | ..+ | -..+-.+.|++.+.++=
T Consensus 163 KLvEVir~~-----~TS~eTf~~l~~f~k~~gKttVackDtp---G---FIV----N---RlLiPyl~ea~r~yerG--- 221 (298)
T KOG2304|consen 163 KLVEVIRTD-----DTSDETFNALVDFGKAVGKTTVACKDTP---G---FIV----N---RLLIPYLMEAIRMYERG--- 221 (298)
T ss_pred HHhhhhcCC-----CCCHHHHHHHHHHHHHhCCCceeecCCC---c---hhh----h---HHHHHHHHHHHHHHHhc---
Confidence 322221111 1246888888898899998777664431 1 111 1 12345677888888875
Q ss_pred hCCCCCHHHHHHHHhcc
Q psy9637 211 HGWKLNYGGIALMWRGG 227 (490)
Q Consensus 211 ~~~Gld~~~v~~i~~~g 227 (490)
....+++-..++-|
T Consensus 222 ---dAskeDIDtaMklG 235 (298)
T KOG2304|consen 222 ---DASKEDIDTAMKLG 235 (298)
T ss_pred ---CCcHhhHHHHHhcc
Confidence 44555555554433
|
|
| >TIGR00507 aroE shikimate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.1e-06 Score=87.39 Aligned_cols=117 Identities=19% Similarity=0.181 Sum_probs=80.6
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCc--hH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGS--AV 82 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~--~v 82 (490)
+++.|+|.|.+|.+++..|++.|++|+++||++++.+.+.+.-.....+. ..++.+.. +..+|+||.|+|.+. .+
T Consensus 118 k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~~~~~-~~~~~~~~--~~~~DivInatp~gm~~~~ 194 (270)
T TIGR00507 118 QRVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELAERFQRYGEIQ-AFSMDELP--LHRVDLIINATSAGMSGNI 194 (270)
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhcCceE-Eechhhhc--ccCccEEEECCCCCCCCCC
Confidence 57999999999999999999999999999999998888765421101111 22333322 234899999999862 22
Q ss_pred HHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccccccc
Q psy9637 83 DDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGC 127 (490)
Q Consensus 83 ~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~ 127 (490)
+++.- ....+.++.+++|++...+. | ...+.++++|+.++|.
T Consensus 195 ~~~~~-~~~~l~~~~~v~D~~y~p~~-T-~ll~~A~~~G~~~vdG 236 (270)
T TIGR00507 195 DEPPV-PAEKLKEGMVVYDMVYNPGE-T-PFLAEAKSLGTKTIDG 236 (270)
T ss_pred CCCCC-CHHHcCCCCEEEEeccCCCC-C-HHHHHHHHCCCeeeCC
Confidence 21100 02346789999999886544 4 4667778888876654
|
This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain. |
| >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=98.31 E-value=3.3e-06 Score=85.71 Aligned_cols=95 Identities=18% Similarity=0.221 Sum_probs=68.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCC-CeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchH
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHG-FTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAV 82 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G-~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v 82 (490)
.++|+|||+|.||..++..|...| .+|+++||++++.+.+.+.... .+...+++.+.+. .+|+||.++|.+..
T Consensus 178 ~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~--~~~~~~~~~~~l~---~aDvVi~at~~~~~- 251 (311)
T cd05213 178 GKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGG--NAVPLDELLELLN---EADVVISATGAPHY- 251 (311)
T ss_pred CCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCC--eEEeHHHHHHHHh---cCCEEEECCCCCch-
Confidence 368999999999999999999866 7899999999998887765321 1212223444444 49999999998755
Q ss_pred HHHHHhhcccC-CCCCEEEcCCC
Q psy9637 83 DDFIDKLVPLL-EKGDIIIDGGN 104 (490)
Q Consensus 83 ~~vl~~l~~~l-~~g~iiId~s~ 104 (490)
..++..+.... .++.+|||.+.
T Consensus 252 ~~~~~~~~~~~~~~~~~viDlav 274 (311)
T cd05213 252 AKIVERAMKKRSGKPRLIVDLAV 274 (311)
T ss_pred HHHHHHHHhhCCCCCeEEEEeCC
Confidence 44444443322 35789999985
|
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, |
| >TIGR00112 proC pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
Probab=98.31 E-value=3.8e-05 Score=75.30 Aligned_cols=128 Identities=13% Similarity=0.182 Sum_probs=86.9
Q ss_pred CCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHHHHHhhcccCCCCCEEEcCCCCC
Q psy9637 27 GFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 27 G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~s~~~ 106 (490)
-++|.+|||++++.+.+.+... +..+.+..++++. +|+||+||++ ..+++++.++.+.+.++++||...++.
T Consensus 9 ~~~I~v~~R~~e~~~~l~~~~g----~~~~~~~~e~~~~---aDiIiLaVkP-~~i~~vl~~l~~~~~~~~~ivS~~agi 80 (245)
T TIGR00112 9 AYDIIVINRSPEKLAALAKELG----IVASSDAQEAVKE---ADVVFLAVKP-QDLEEVLSELKSEKGKDKLLISIAAGV 80 (245)
T ss_pred CCeEEEEcCCHHHHHHHHHHcC----cEEeCChHHHHhh---CCEEEEEeCH-HHHHHHHHHHhhhccCCCEEEEecCCC
Confidence 3689999999999888866421 2356788888877 8999999995 699999999988777789999998877
Q ss_pred hHHHHHHHHHHHHccccc-cccCCCCCccccccCCccCCCC---CcchHHHHHHHHHhhCCceee
Q psy9637 107 YQDTDRRSKALEAKGLLY-VGCGVSGGEDGARYGPSLMPGG---NPAAWPALKPIFQKLNPSFET 167 (490)
Q Consensus 107 ~~~~~~~~~~l~~~gi~~-ld~~vsGg~~~a~~G~~im~GG---~~~a~~~v~~ll~~l~~~~~~ 167 (490)
+....+ +.+. .+... --+|- .+.....|.+.+..+ +++..+.++.+|+.+|..+..
T Consensus 81 ~~~~l~--~~~~-~~~~ivR~mPn--~~~~~~~g~t~~~~~~~~~~~~~~~v~~lf~~~G~~~~v 140 (245)
T TIGR00112 81 TLEKLS--QLLG-GTRRVVRVMPN--TPAKVGAGVTAIAANANVSEEDRALVLALFKAVGEVVEL 140 (245)
T ss_pred CHHHHH--HHcC-CCCeEEEECCC--hHHHHhCCeEEEecCCCCCHHHHHHHHHHHHhCCCEEEE
Confidence 544332 2232 11111 12232 122334565333333 335678899999999986644
|
This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs. |
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.29 E-value=6.6e-06 Score=84.94 Aligned_cols=127 Identities=17% Similarity=0.183 Sum_probs=92.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCC-CeEEEEeCChHHHHHHHHcccCCCC-e-eccCCHHHHHhhCCCCcEEEEecCCCc
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHG-FTVVAYNRTTAKVDSFLANEAKGTN-I-IGAHSLEELVKNLKKPRRVMMLVKAGS 80 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G-~~V~v~dr~~~~~~~l~~~g~~~~~-i-~~~~s~~e~v~~l~~~dvIil~vp~~~ 80 (490)
||+|-|||+|.+|+..|..|+++| ++|++-||++++.+++........+ + .-+.+.+.+.+-+++.|+||.++|..
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p~~- 79 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAAPPF- 79 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeCCch-
Confidence 468999999999999999999999 9999999999999998765321100 0 11344545555555589999999986
Q ss_pred hHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccc-cccCCCCCccc
Q psy9637 81 AVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLY-VGCGVSGGEDG 135 (490)
Q Consensus 81 ~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~-ld~~vsGg~~~ 135 (490)
....+++.. ++.|.-++|.+...+.. .++.+.+++.|+.. +++++.-|...
T Consensus 80 ~~~~i~ka~---i~~gv~yvDts~~~~~~-~~~~~~a~~Agit~v~~~G~dPGi~n 131 (389)
T COG1748 80 VDLTILKAC---IKTGVDYVDTSYYEEPP-WKLDEEAKKAGITAVLGCGFDPGITN 131 (389)
T ss_pred hhHHHHHHH---HHhCCCEEEcccCCchh-hhhhHHHHHcCeEEEcccCcCcchHH
Confidence 444554443 45789999999866553 66667778888764 57777666543
|
|
| >PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.2e-05 Score=69.28 Aligned_cols=110 Identities=18% Similarity=0.339 Sum_probs=79.7
Q ss_pred CcEEEEcccHHHHHHHHHHHHC--CCeEE-EEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCch
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDH--GFTVV-AYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSA 81 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~--G~~V~-v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~ 81 (490)
+||||||+|.+|......+.+. +++|+ ++|+++++.+.+.+... +..++|++++++. +.+|+|++++|+...
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~----~~~~~~~~~ll~~-~~~D~V~I~tp~~~h 75 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYG----IPVYTDLEELLAD-EDVDAVIIATPPSSH 75 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTT----SEEESSHHHHHHH-TTESEEEEESSGGGH
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhc----ccchhHHHHHHHh-hcCCEEEEecCCcch
Confidence 3899999999999999998877 45654 78999999998865532 2368999999984 248999999999754
Q ss_pred HHHHHHhhcccCCCC-CEEEcCC-CCChHHHHHHHHHHHHcccc
Q psy9637 82 VDDFIDKLVPLLEKG-DIIIDGG-NSEYQDTDRRSKALEAKGLL 123 (490)
Q Consensus 82 v~~vl~~l~~~l~~g-~iiId~s-~~~~~~~~~~~~~l~~~gi~ 123 (490)
.+ .+..++. .| .++++-= .....+..++.+..+++|..
T Consensus 76 ~~-~~~~~l~---~g~~v~~EKP~~~~~~~~~~l~~~a~~~~~~ 115 (120)
T PF01408_consen 76 AE-IAKKALE---AGKHVLVEKPLALTLEEAEELVEAAKEKGVK 115 (120)
T ss_dssp HH-HHHHHHH---TTSEEEEESSSSSSHHHHHHHHHHHHHHTSC
T ss_pred HH-HHHHHHH---cCCEEEEEcCCcCCHHHHHHHHHHHHHhCCE
Confidence 44 3333333 22 5677631 22457777777888877764
|
GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A .... |
| >TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.27 E-value=2.3e-06 Score=85.80 Aligned_cols=105 Identities=19% Similarity=0.118 Sum_probs=74.9
Q ss_pred ceeecCCCCcchhHHhhhhHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhccCcchhHHHHHHHHH-------hccc
Q psy9637 349 CDWVGEQGAGHFVKMVHNGIEYGDMQLICEAYHLMTGALGMSHDEMSAVFEDWNKGELDSFLIEITKDI-------LKFK 421 (490)
Q Consensus 349 ~~~~g~~g~gh~vkmvhngiey~~m~~~~E~~~~~~~~~~~~~~~~~~~~~~w~~g~~~s~l~~~~~~~-------~~~~ 421 (490)
+.|+|+.|+||.+||++|.+.++.|++++|++.+.++ .|+ |..++++..+.+..+||..+.-... ....
T Consensus 153 ~~~~g~~g~g~~~Kl~~n~~~~~~~~~~~Ea~~la~~-~Gl---d~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 228 (288)
T TIGR01692 153 IVHCGDHGAGQAAKICNNMLLGISMIGTAEAMALGEK-LGL---DPKVLFEIANTSSGRCWSSDTYNPVPGVMPQAPASN 228 (288)
T ss_pred eEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCC---CHHHHHHHHhcCCccCcHHHHhCCCccccccccccC
Confidence 5589999999999999999999999999999999997 898 6677777788777778876543221 0111
Q ss_pred CCCCCcchhhhccccCCCcchHHHHHHHHhcCCCchhhHHHH
Q psy9637 422 DTDGAPLVEKIKDYAGQKGTGKWTAISALDYGVPVTLIGESV 463 (490)
Q Consensus 422 ~~~~~~~l~~i~~~~~~~g~g~w~~~~a~~~~~p~~~i~~a~ 463 (490)
|-+....++.... .-++..+.|.+.|+|+|+...+.
T Consensus 229 ~~~~~f~~~~~~K------Dl~~~~~~a~~~g~~~p~~~~~~ 264 (288)
T TIGR01692 229 GYQGGFGTALMLK------DLGLAQDAAKSAGAPTPLGALAR 264 (288)
T ss_pred CCCCCcchHHHHh------hHHHHHHHHHHcCCCChHHHHHH
Confidence 2111111222221 34488899999999999765544
|
This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446). |
| >PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=2.6e-06 Score=84.48 Aligned_cols=74 Identities=19% Similarity=0.326 Sum_probs=62.4
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
++|+|||. |.||.+||.+|.++|++|++|... +.++++.+.+ +|+||+|++.+..++
T Consensus 159 k~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~-------------------t~~l~~~~~~---ADIVI~avg~~~~v~ 216 (284)
T PRK14179 159 KHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSR-------------------TRNLAEVARK---ADILVVAIGRGHFVT 216 (284)
T ss_pred CEEEEECCCCcCcHHHHHHHHHCCCEEEEECCC-------------------CCCHHHHHhh---CCEEEEecCccccCC
Confidence 58999999 999999999999999999999321 3467787777 999999999987766
Q ss_pred HHHHhhcccCCCCCEEEcCCCCC
Q psy9637 84 DFIDKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 84 ~vl~~l~~~l~~g~iiId~s~~~ 106 (490)
... +++|.+|||+|...
T Consensus 217 ~~~------ik~GavVIDvgin~ 233 (284)
T PRK14179 217 KEF------VKEGAVVIDVGMNR 233 (284)
T ss_pred HHH------ccCCcEEEEeccee
Confidence 543 78999999999653
|
|
| >COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.23 E-value=3.9e-06 Score=82.43 Aligned_cols=85 Identities=22% Similarity=0.370 Sum_probs=70.7
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHH-HHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAK-VDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~-~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
++|+|||.|.-|.+-|+||.++|.+|++--|.... .+...+.|.. +.+++|++.. +|+|++.+|+. .-.
T Consensus 19 K~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA~~dGf~------V~~v~ea~k~---ADvim~L~PDe-~q~ 88 (338)
T COG0059 19 KKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKAKEDGFK------VYTVEEAAKR---ADVVMILLPDE-QQK 88 (338)
T ss_pred CeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHHHHhcCCE------eecHHHHhhc---CCEEEEeCchh-hHH
Confidence 58999999999999999999999999887665444 5555555543 7899999987 99999999995 666
Q ss_pred HHHH-hhcccCCCCCEE
Q psy9637 84 DFID-KLVPLLEKGDII 99 (490)
Q Consensus 84 ~vl~-~l~~~l~~g~ii 99 (490)
+|.+ ++.|.|++|+.+
T Consensus 89 ~vy~~~I~p~Lk~G~aL 105 (338)
T COG0059 89 EVYEKEIAPNLKEGAAL 105 (338)
T ss_pred HHHHHHhhhhhcCCceE
Confidence 7775 899999999865
|
|
| >PF00984 UDPG_MGDP_dh: UDP-glucose/GDP-mannose dehydrogenase family, central domain; InterPro: IPR014026 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=98.20 E-value=7.5e-06 Score=68.27 Aligned_cols=91 Identities=13% Similarity=0.047 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhcccchhhHhHhHhHHhhccCcccccccCChhH
Q psy9637 178 KKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGGCIIRSVFLGNIKAAFDKNPALSNLLLDPFF 257 (490)
Q Consensus 178 ~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~~~v~~i~~~g~~~~s~~l~~i~~~~~~~~~~~~~~~~~~f 257 (490)
.|+++|++.|++.+.+++..+|...++++. |+|..++.+.+.... ++....+.|++
T Consensus 3 ~AEl~K~~~N~~~a~~iaf~Nel~~lce~~------giD~~~V~~~~~~d~------------------ri~~~~~~pg~ 58 (96)
T PF00984_consen 3 EAELIKYAENAFRATKIAFANELARLCEKL------GIDVYEVIEAANTDP------------------RIGPHYLRPGP 58 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------TSBHHHHHHHHHTST------------------TTTSSS-S-SS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCHHHHHHHHccCc------------------ccccccCCCCC
Confidence 589999999999999999999999999999 999999999986443 22233445554
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHH
Q psy9637 258 KDAIHATQSSWRAVVSQSALLGIPTPAFATALAFY 292 (490)
Q Consensus 258 ~~~l~~~~kDl~~~~~~A~~~gv~~P~~~aa~~~~ 292 (490)
...-.++.||...++..+++.|.+.++++++.+.-
T Consensus 59 g~GG~ClpkD~~~L~~~~~~~g~~~~ll~~~~~~N 93 (96)
T PF00984_consen 59 GFGGSCLPKDPYALIYLAKELGYPPQLLEAVININ 93 (96)
T ss_dssp S--SSCHHHHHHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred CCCCcchhhhHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 44556789999999999999999999999887653
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents an alpha helical region that serves as the dimerisation interface for these enzymes [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2O3J_A 3OJO_A 3OJL_A 3PLR_A 3PJG_A 3PID_A 3PLN_A 3PHL_A 3TDK_B 2Q3E_A .... |
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=98.18 E-value=3.1e-06 Score=75.23 Aligned_cols=95 Identities=16% Similarity=0.240 Sum_probs=65.7
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCe-EEEEeCChHHHHHHHHcccC-CCCeeccCCHHHHHhhCCCCcEEEEecCCCchH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFT-VVAYNRTTAKVDSFLANEAK-GTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAV 82 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~-V~v~dr~~~~~~~l~~~g~~-~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v 82 (490)
.++.|||+|.||+.++..|.+.|.+ |+++||+.++++.+.+.... .-.+...+++.+.... +|+||.++|.+...
T Consensus 13 ~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~~~---~DivI~aT~~~~~~ 89 (135)
T PF01488_consen 13 KRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEEALQE---ADIVINATPSGMPI 89 (135)
T ss_dssp SEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCHHHHT---ESEEEE-SSTTSTS
T ss_pred CEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHHHHHhh---CCeEEEecCCCCcc
Confidence 5899999999999999999999987 99999999999998876421 1112334455555555 89999999997541
Q ss_pred HHHHHhhcccCCCC-CEEEcCCC
Q psy9637 83 DDFIDKLVPLLEKG-DIIIDGGN 104 (490)
Q Consensus 83 ~~vl~~l~~~l~~g-~iiId~s~ 104 (490)
+-.+.++...+. .+++|.+.
T Consensus 90 --i~~~~~~~~~~~~~~v~Dla~ 110 (135)
T PF01488_consen 90 --ITEEMLKKASKKLRLVIDLAV 110 (135)
T ss_dssp --STHHHHTTTCHHCSEEEES-S
T ss_pred --cCHHHHHHHHhhhhceecccc
Confidence 112222222121 49999974
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type | Back alignment and domain information |
|---|
Probab=98.13 E-value=7e-06 Score=83.82 Aligned_cols=95 Identities=16% Similarity=0.160 Sum_probs=71.8
Q ss_pred CcEEEEcccHHHHHHHHHHH--HCCCeEEEEeCChHHHHHHHHcccC-CCCeeccCCHHHHHhhCCCCcEEEEecCCCch
Q psy9637 5 GDIGLIGLAVMGQNLILNMN--DHGFTVVAYNRTTAKVDSFLANEAK-GTNIIGAHSLEELVKNLKKPRRVMMLVKAGSA 81 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~--~~G~~V~v~dr~~~~~~~l~~~g~~-~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~ 81 (490)
.++||||+|.||...+..|. ....+|.+|||++++.+.|.+.-.. +..+..++++++++++ +|+|++|+|+.++
T Consensus 129 ~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~g~~v~~~~~~~eav~~---aDiVitaT~s~~P 205 (325)
T TIGR02371 129 SVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDYEVPVRAATDPREAVEG---CDILVTTTPSRKP 205 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhhCCcEEEeCCHHHHhcc---CCEEEEecCCCCc
Confidence 57999999999999666654 4557899999999999888764211 2235568999999987 9999999998754
Q ss_pred HHHHHHhhcccCCCCCEEEcCCCCCh
Q psy9637 82 VDDFIDKLVPLLEKGDIIIDGGNSEY 107 (490)
Q Consensus 82 v~~vl~~l~~~l~~g~iiId~s~~~~ 107 (490)
+ +. ...+++|..|.-.|+..|
T Consensus 206 ~---~~--~~~l~~g~~v~~vGs~~p 226 (325)
T TIGR02371 206 V---VK--ADWVSEGTHINAIGADAP 226 (325)
T ss_pred E---ec--HHHcCCCCEEEecCCCCc
Confidence 3 21 124689999988887654
|
This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity. |
| >smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Probab=98.13 E-value=6.9e-06 Score=71.41 Aligned_cols=98 Identities=17% Similarity=0.215 Sum_probs=63.2
Q ss_pred cEEEEc-ccHHHHHHHHHHHHC-CCeEEEE-eCChHHHHHHHHcccCCCCe-eccCCHHHHHhhCCCCcEEEEecCCCch
Q psy9637 6 DIGLIG-LAVMGQNLILNMNDH-GFTVVAY-NRTTAKVDSFLANEAKGTNI-IGAHSLEELVKNLKKPRRVMMLVKAGSA 81 (490)
Q Consensus 6 ~IgiIG-lG~MG~~lA~~L~~~-G~~V~v~-dr~~~~~~~l~~~g~~~~~i-~~~~s~~e~v~~l~~~dvIil~vp~~~~ 81 (490)
||+||| .|.+|..++..|.++ ++++... ++++++.+.+...+..-..+ ....+..++.. ..+|+||+|+|++ .
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~DvV~~~~~~~-~ 77 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFEE--LAVDIVFLALPHG-V 77 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCcccccccccccccCChhh--cCCCEEEEcCCcH-H
Confidence 699999 599999999999984 8887765 66544433333322110001 00111122221 2489999999997 5
Q ss_pred HHHHHHhhcccCCCCCEEEcCCCCC
Q psy9637 82 VDDFIDKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 82 v~~vl~~l~~~l~~g~iiId~s~~~ 106 (490)
..+++..+.+.+.+|.+|||+|+..
T Consensus 78 ~~~~~~~~~~~~~~g~~viD~s~~~ 102 (122)
T smart00859 78 SKEIAPLLPKAAEAGVKVIDLSSAF 102 (122)
T ss_pred HHHHHHHHHhhhcCCCEEEECCccc
Confidence 5665555566678999999999865
|
The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase. |
| >PRK11559 garR tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=1e-05 Score=81.31 Aligned_cols=105 Identities=16% Similarity=0.185 Sum_probs=74.2
Q ss_pred ceeecCCCCcchhHHhhhhHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhccCcchhHHHHHHHHHhcccCCCCCcc
Q psy9637 349 CDWVGEQGAGHFVKMVHNGIEYGDMQLICEAYHLMTGALGMSHDEMSAVFEDWNKGELDSFLIEITKDILKFKDTDGAPL 428 (490)
Q Consensus 349 ~~~~g~~g~gh~vkmvhngiey~~m~~~~E~~~~~~~~~~~~~~~~~~~~~~w~~g~~~s~l~~~~~~~~~~~~~~~~~~ 428 (490)
+.|+|+.|+||.+|+++|.+.++++++++|++.++++ .|+ |..++++.|+.+..+|+.++.-..-+.+.|-+....
T Consensus 159 ~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~-~Gi---~~~~~~~~l~~~~~~s~~~~~~~~~~~~~d~~~~f~ 234 (296)
T PRK11559 159 VVHTGDIGAGNVTKLANQVIVALNIAAMSEALVLATK-AGV---NPDLVYQAIRGGLAGSTVLDAKAPMVMDRNFKPGFR 234 (296)
T ss_pred eEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCC---CHHHHHHHHhcCcccCHHHHhhchHhhcCCCCCCcc
Confidence 4578999999999999999999999999999999997 788 567778888887778887765433222122110011
Q ss_pred hhhhccccCCCcchHHHHHHHHhcCCCchhhHHHH
Q psy9637 429 VEKIKDYAGQKGTGKWTAISALDYGVPVTLIGESV 463 (490)
Q Consensus 429 l~~i~~~~~~~g~g~w~~~~a~~~~~p~~~i~~a~ 463 (490)
++.... .-+-.++.|.+.|+|+|+...+.
T Consensus 235 ~~~~~K------Dl~~~~~~a~~~g~~~p~~~~~~ 263 (296)
T PRK11559 235 IDLHIK------DLANALDTSHGVGAPLPLTAAVM 263 (296)
T ss_pred hHHHHH------HHHHHHHHHHHcCCCChHHHHHH
Confidence 221111 12245678899999999766555
|
|
| >PRK06223 malate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.09 E-value=1.5e-05 Score=80.70 Aligned_cols=97 Identities=16% Similarity=0.221 Sum_probs=65.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHH----ccc---CCCCeeccCCHHHHHhhCCCCcEEEEe
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGF-TVVAYNRTTAKVDSFLA----NEA---KGTNIIGAHSLEELVKNLKKPRRVMML 75 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~----~g~---~~~~i~~~~s~~e~v~~l~~~dvIil~ 75 (490)
|+||+|||+|.||..+|..++..|+ +|+++|+++++.+.... ... ...+++.+.+.++ +.. +|+||++
T Consensus 2 ~~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~~~-~~~---aDiVii~ 77 (307)
T PRK06223 2 RKKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDYED-IAG---SDVVVIT 77 (307)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCHHH-HCC---CCEEEEC
Confidence 5799999999999999999999876 99999998876654221 111 0123444456644 333 8999998
Q ss_pred cCCCc---------------hHHHHHHhhcccCCCCCEEEcCCCC
Q psy9637 76 VKAGS---------------AVDDFIDKLVPLLEKGDIIIDGGNS 105 (490)
Q Consensus 76 vp~~~---------------~v~~vl~~l~~~l~~g~iiId~s~~ 105 (490)
+..+. .+++++..+.+.. ++.++|..+|.
T Consensus 78 ~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~-~~~~viv~tNP 121 (307)
T PRK06223 78 AGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYA-PDAIVIVVTNP 121 (307)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCc
Confidence 73221 2445556666665 56677777763
|
|
| >PRK05225 ketol-acid reductoisomerase; Validated | Back alignment and domain information |
|---|
Probab=98.06 E-value=8e-06 Score=85.13 Aligned_cols=86 Identities=23% Similarity=0.300 Sum_probs=68.8
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEE------eCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCC
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAY------NRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKA 78 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~------dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~ 78 (490)
++|+|||+|..|.+.|.||...|++|++- |.+.+..+.+.+.|. ...++.|++.. +|+|++.+|+
T Consensus 37 KtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dGF------~v~~~~Ea~~~---ADvVviLlPD 107 (487)
T PRK05225 37 KKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGF------KVGTYEELIPQ---ADLVINLTPD 107 (487)
T ss_pred CEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHhcCC------ccCCHHHHHHh---CCEEEEcCCh
Confidence 68999999999999999999999999943 333445555554443 24678888887 9999999999
Q ss_pred CchHHHHHHhhcccCCCCCEEE
Q psy9637 79 GSAVDDFIDKLVPLLEKGDIII 100 (490)
Q Consensus 79 ~~~v~~vl~~l~~~l~~g~iiI 100 (490)
. .-..+.+++.|.|++|.++.
T Consensus 108 t-~q~~v~~~i~p~LK~Ga~L~ 128 (487)
T PRK05225 108 K-QHSDVVRAVQPLMKQGAALG 128 (487)
T ss_pred H-HHHHHHHHHHhhCCCCCEEE
Confidence 7 56667799999999998764
|
|
| >TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase | Back alignment and domain information |
|---|
Probab=98.02 E-value=1.9e-05 Score=79.35 Aligned_cols=105 Identities=15% Similarity=0.114 Sum_probs=76.6
Q ss_pred ceeecCCCCcchhHHhhhhHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhccCcchhHHHHHHHHHhcccCCCCCcc
Q psy9637 349 CDWVGEQGAGHFVKMVHNGIEYGDMQLICEAYHLMTGALGMSHDEMSAVFEDWNKGELDSFLIEITKDILKFKDTDGAPL 428 (490)
Q Consensus 349 ~~~~g~~g~gh~vkmvhngiey~~m~~~~E~~~~~~~~~~~~~~~~~~~~~~w~~g~~~s~l~~~~~~~~~~~~~~~~~~ 428 (490)
+.|+|+.|+|+.+|+++|.+.+..+++++|++.++++ .|+ |..++++..+.+..+||+++...+.+...|-+....
T Consensus 156 ~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~-~Gi---d~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~f~ 231 (291)
T TIGR01505 156 IVLVGGNGDGQTCKVANQIIVALNIEAVSEALVFASK-AGV---DPVRVRQALRGGLAGSTVLEVKGERVIDRTFKPGFR 231 (291)
T ss_pred eEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCC---CHHHHHHHHhcCcccCHHHHhhChhhhcCCCCCCcc
Confidence 4579999999999999999999999999999999998 888 555666666766678898877654433222111122
Q ss_pred hhhhccccCCCcchHHHHHHHHhcCCCchhhHHHH
Q psy9637 429 VEKIKDYAGQKGTGKWTAISALDYGVPVTLIGESV 463 (490)
Q Consensus 429 l~~i~~~~~~~g~g~w~~~~a~~~~~p~~~i~~a~ 463 (490)
++.... .-+.....|.+.|+|.|+..++.
T Consensus 232 ~~~~~K------Dl~~~~~~a~~~g~~~~~~~~~~ 260 (291)
T TIGR01505 232 IDLHQK------DLNLALDSAKAVGANLPNTATVQ 260 (291)
T ss_pred hHHHHH------HHHHHHHHHHHcCCCChhHHHHH
Confidence 222222 23467888999999999777665
|
This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism. |
| >PLN00203 glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=98.01 E-value=2.4e-05 Score=84.37 Aligned_cols=98 Identities=14% Similarity=0.205 Sum_probs=69.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHccc-CCCCeeccCCHHHHHhhCCCCcEEEEecCCCch
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGF-TVVAYNRTTAKVDSFLANEA-KGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSA 81 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~g~-~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~ 81 (490)
..+|+|||+|.||..++..|...|+ +|+++||++++.+.+.+... ....+...+++.+++.. +|+||.|++.+.+
T Consensus 266 ~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~al~~---aDVVIsAT~s~~p 342 (519)
T PLN00203 266 SARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLACAAE---ADVVFTSTSSETP 342 (519)
T ss_pred CCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHHHHhc---CCEEEEccCCCCC
Confidence 3689999999999999999999997 79999999999998876521 10011233455555554 9999999987765
Q ss_pred --HHHHHHhhcccC---CCCCEEEcCCC
Q psy9637 82 --VDDFIDKLVPLL---EKGDIIIDGGN 104 (490)
Q Consensus 82 --v~~vl~~l~~~l---~~g~iiId~s~ 104 (490)
..+.++.+.+.- .+..++||.+-
T Consensus 343 vI~~e~l~~~~~~~~~~~~~~~~IDLAv 370 (519)
T PLN00203 343 LFLKEHVEALPPASDTVGGKRLFVDISV 370 (519)
T ss_pred eeCHHHHHHhhhcccccCCCeEEEEeCC
Confidence 345555543321 12358999874
|
|
| >PTZ00075 Adenosylhomocysteinase; Provisional | Back alignment and domain information |
|---|
Probab=98.00 E-value=3.8e-05 Score=81.16 Aligned_cols=89 Identities=13% Similarity=0.144 Sum_probs=70.2
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
++|+|||+|.+|..+|.+|...|.+|+++|+++.+.......|.. ..+++++++. +|+|++++.. ..
T Consensus 255 KtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~~------~~~leell~~---ADIVI~atGt----~~ 321 (476)
T PTZ00075 255 KTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAAMEGYQ------VVTLEDVVET---ADIFVTATGN----KD 321 (476)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHhcCce------eccHHHHHhc---CCEEEECCCc----cc
Confidence 589999999999999999999999999999998776444443332 3567887776 9999998643 33
Q ss_pred HH-HhhcccCCCCCEEEcCCCCC
Q psy9637 85 FI-DKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 85 vl-~~l~~~l~~g~iiId~s~~~ 106 (490)
++ .+.+..+++|.++|+.|...
T Consensus 322 iI~~e~~~~MKpGAiLINvGr~d 344 (476)
T PTZ00075 322 IITLEHMRRMKNNAIVGNIGHFD 344 (476)
T ss_pred ccCHHHHhccCCCcEEEEcCCCc
Confidence 45 35667789999999998763
|
|
| >PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.99 E-value=2e-05 Score=79.49 Aligned_cols=104 Identities=21% Similarity=0.131 Sum_probs=71.2
Q ss_pred ceeecCCCCcchhHHhhhhHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhccCcchhHHH-HHHH-HHhcccCCCCC
Q psy9637 349 CDWVGEQGAGHFVKMVHNGIEYGDMQLICEAYHLMTGALGMSHDEMSAVFEDWNKGELDSFLI-EITK-DILKFKDTDGA 426 (490)
Q Consensus 349 ~~~~g~~g~gh~vkmvhngiey~~m~~~~E~~~~~~~~~~~~~~~~~~~~~~w~~g~~~s~l~-~~~~-~~~~~~~~~~~ 426 (490)
+.|+|+.|+||.+|+++|-+.++++++++|++.++++ .|++. ..+++..+.++..|+.+ .... .++. .|-+..
T Consensus 158 ~~~~g~~G~g~~~Kl~~N~~~~~~~~~~~Ea~~l~~~-~Gld~---~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~ 232 (296)
T PRK15461 158 LINAGGPGMGIRVKLINNYMSIALNALSAEAAVLCEA-LGLSF---DVALKVMSGTAAGKGHFTTTWPNKVLK-GDLSPA 232 (296)
T ss_pred eEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCH---HHHHHHHhcCcccChHHHccccchhcc-CCCCCC
Confidence 4589999999999999999999999999999999997 89954 45555565555333333 2222 3333 232211
Q ss_pred cchhhhccccCCCcchHHHHHHHHhcCCCchhhHHHH
Q psy9637 427 PLVEKIKDYAGQKGTGKWTAISALDYGVPVTLIGESV 463 (490)
Q Consensus 427 ~~l~~i~~~~~~~g~g~w~~~~a~~~~~p~~~i~~a~ 463 (490)
..++.... .-+-..+.|.+.|+|+|+...+.
T Consensus 233 f~~~~~~K------D~~l~~~~a~~~g~~~p~~~~~~ 263 (296)
T PRK15461 233 FMIDLAHK------DLGIALDVANQLHVPMPLGAASR 263 (296)
T ss_pred cchHHHHh------hHHHHHHHHHHcCCCChHHHHHH
Confidence 23333332 33478889999999999766554
|
|
| >KOG2305|consensus | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00022 Score=67.49 Aligned_cols=198 Identities=16% Similarity=0.190 Sum_probs=121.3
Q ss_pred CCCCCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHH-----------HcccCC---------CCeeccCCHH
Q psy9637 1 MAAKGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFL-----------ANEAKG---------TNIIGAHSLE 60 (490)
Q Consensus 1 M~~~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~-----------~~g~~~---------~~i~~~~s~~ 60 (490)
|+ .-||+|+|.|.+|+..|.-++..||+|..||..++.+.... +.|... ..|..++++.
T Consensus 1 ms-~~ki~ivgSgl~g~~WAmlFAs~GyqVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~t~~l~ 79 (313)
T KOG2305|consen 1 MS-FGKIAIVGSGLVGSSWAMLFASSGYQVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISGTTSLN 79 (313)
T ss_pred CC-ccceeEeecccccchHHHHHhccCceEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhCCccHH
Confidence 54 35899999999999999999999999999999988655322 222211 1245688999
Q ss_pred HHHhhCCCCcEEEEecCCCchHHHHH-HhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcc---ccccccCCCCCcccc
Q psy9637 61 ELVKNLKKPRRVMMLVKAGSAVDDFI-DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKG---LLYVGCGVSGGEDGA 136 (490)
Q Consensus 61 e~v~~l~~~dvIil~vp~~~~v~~vl-~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~g---i~~ld~~vsGg~~~a 136 (490)
|+++. +=.|=-|+|.+-..+.-+ .+|-..+ ...+|+..||+.+..+.-.......+. .|.+..|-.-.-.
T Consensus 80 E~vk~---Ai~iQEcvpE~L~lkk~ly~qlD~i~-d~~tIlaSSTSt~mpS~~s~gL~~k~q~lvaHPvNPPyfiPLv-- 153 (313)
T KOG2305|consen 80 ELVKG---AIHIQECVPEDLNLKKQLYKQLDEIA-DPTTILASSTSTFMPSKFSAGLINKEQCLVAHPVNPPYFIPLV-- 153 (313)
T ss_pred HHHhh---hhhHHhhchHhhHHHHHHHHHHHHhc-CCceEEeccccccChHHHhhhhhhhhheeEecCCCCCcccchh--
Confidence 99987 667778999876666444 4444444 445666777765544443332222221 2233332211100
Q ss_pred ccCCccCC--CCCcchHHHHHHHHHhhCCceee-CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q psy9637 137 RYGPSLMP--GGNPAAWPALKPIFQKLNPSFET-SAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGW 213 (490)
Q Consensus 137 ~~G~~im~--GG~~~a~~~v~~ll~~l~~~~~~-~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~ 213 (490)
-+++ =-.++.+++.+.+.+.++.+.+. ..+++.+. +-....+.++|.-.|...=
T Consensus 154 ----ElVPaPwTsp~tVdrt~~lM~sigq~pV~l~rei~Gf~-------------lnriq~Ailne~wrLvasG------ 210 (313)
T KOG2305|consen 154 ----ELVPAPWTSPDTVDRTRALMRSIGQEPVTLKREILGFA-------------LNRIQYAILNETWRLVASG------ 210 (313)
T ss_pred ----eeccCCCCChhHHHHHHHHHHHhCCCCcccccccccce-------------eccccHHHHHHHHHHHHcc------
Confidence 1111 13568999999999999965432 22221010 1123345667777776665
Q ss_pred CCCHHHHHHHHhccc
Q psy9637 214 KLNYGGIALMWRGGC 228 (490)
Q Consensus 214 Gld~~~v~~i~~~g~ 228 (490)
+++..++-.+++.|-
T Consensus 211 il~v~dvD~VmS~GL 225 (313)
T KOG2305|consen 211 ILNVNDVDAVMSAGL 225 (313)
T ss_pred CcchhhHHHHHhcCC
Confidence 677777777776664
|
|
| >TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=97.99 E-value=2.4e-05 Score=79.10 Aligned_cols=96 Identities=14% Similarity=0.224 Sum_probs=67.3
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-eEEEEeCChHHHHHH----HHccc---CCCCeeccCCHHHHHhhCCCCcEEEEec
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGF-TVVAYNRTTAKVDSF----LANEA---KGTNIIGAHSLEELVKNLKKPRRVMMLV 76 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l----~~~g~---~~~~i~~~~s~~e~v~~l~~~dvIil~v 76 (490)
|||+|||.|.||..+|..|+.+|+ +|+++|++++..+.. .+.+. ...++..+.++++ +++ +|+||+++
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~-~~~---aDiVIita 77 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYAD-TAN---SDIVVITA 77 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHH-hCC---CCEEEEcC
Confidence 589999999999999999999887 899999976654421 11111 0234666677776 344 89999999
Q ss_pred CCCc---------------hHHHHHHhhcccCCCCCEEEcCCCC
Q psy9637 77 KAGS---------------AVDDFIDKLVPLLEKGDIIIDGGNS 105 (490)
Q Consensus 77 p~~~---------------~v~~vl~~l~~~l~~g~iiId~s~~ 105 (490)
+.+. .++++++.+.++. ++.+||..+|-
T Consensus 78 g~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~-p~~~iIv~tNP 120 (305)
T TIGR01763 78 GLPRKPGMSREDLLSMNAGIVREVTGRIMEHS-PNPIIVVVSNP 120 (305)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCc
Confidence 7432 2334456666664 66788888873
|
The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable. |
| >PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.98 E-value=3.9e-05 Score=82.34 Aligned_cols=104 Identities=13% Similarity=0.238 Sum_probs=73.6
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
++++|+|.|.+|.+++..|++.|++|+++||++++.+.+.+.... . ..+..++ ..+..+|+||.|+|.+..+..
T Consensus 333 k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~~~--~---~~~~~~~-~~l~~~DiVInatP~g~~~~~ 406 (477)
T PRK09310 333 QHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALASRCQG--K---AFPLESL-PELHRIDIIINCLPPSVTIPK 406 (477)
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcc--c---eechhHh-cccCCCCEEEEcCCCCCcchh
Confidence 579999999999999999999999999999999988887654211 1 1222332 124458999999999865432
Q ss_pred HHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccccc
Q psy9637 85 FIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYV 125 (490)
Q Consensus 85 vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~l 125 (490)
. +. .+|+|+....+.+ . ..+.++++|+..+
T Consensus 407 ~-------l~--~~v~D~~Y~P~~T-~-ll~~A~~~G~~~~ 436 (477)
T PRK09310 407 A-------FP--PCVVDINTLPKHS-P-YTQYARSQGSSII 436 (477)
T ss_pred H-------Hh--hhEEeccCCCCCC-H-HHHHHHHCcCEEE
Confidence 2 11 3899998865443 3 5566677776443
|
|
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.95 E-value=7e-05 Score=72.43 Aligned_cols=98 Identities=20% Similarity=0.335 Sum_probs=69.9
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH--cccCCCCeecc-CCHHHHHh-hCCCCcEEEEecCCCc
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLA--NEAKGTNIIGA-HSLEELVK-NLKKPRRVMMLVKAGS 80 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~--~g~~~~~i~~~-~s~~e~v~-~l~~~dvIil~vp~~~ 80 (490)
|+|.|||+|.+|..+|++|.+.||+|++.|+++++++++.. .... -+... ++...+.+ .++.+|+++.++..+
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~--~v~gd~t~~~~L~~agi~~aD~vva~t~~d- 77 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTH--VVIGDATDEDVLEEAGIDDADAVVAATGND- 77 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceE--EEEecCCCHHHHHhcCCCcCCEEEEeeCCC-
Confidence 58999999999999999999999999999999999988554 2211 12222 33333333 256799999999885
Q ss_pred hHHHHHHhhccc-CCCCCEEEcCCCC
Q psy9637 81 AVDDFIDKLVPL-LEKGDIIIDGGNS 105 (490)
Q Consensus 81 ~v~~vl~~l~~~-l~~g~iiId~s~~ 105 (490)
.+..++..+... +....+|.-..+.
T Consensus 78 ~~N~i~~~la~~~~gv~~viar~~~~ 103 (225)
T COG0569 78 EVNSVLALLALKEFGVPRVIARARNP 103 (225)
T ss_pred HHHHHHHHHHHHhcCCCcEEEEecCH
Confidence 677777655533 5555666655553
|
|
| >TIGR01921 DAP-DH diaminopimelate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.94 E-value=6.6e-05 Score=75.93 Aligned_cols=89 Identities=12% Similarity=0.283 Sum_probs=61.6
Q ss_pred CCCCCcEEEEcccHHHHHHHHHHHHC-CCeEE-EEeCCh-HHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecC
Q psy9637 1 MAAKGDIGLIGLAVMGQNLILNMNDH-GFTVV-AYNRTT-AKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVK 77 (490)
Q Consensus 1 M~~~~~IgiIGlG~MG~~lA~~L~~~-G~~V~-v~dr~~-~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp 77 (490)
|+ +.||+|||+|+||..++..+.++ +++++ +||+++ ++.. + .. .+....+..++. .++|+|++|+|
T Consensus 1 M~-kIRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~~---~-~~---~v~~~~d~~e~l---~~iDVViIctP 69 (324)
T TIGR01921 1 MS-KIRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAETLD---T-ET---PVYAVADDEKHL---DDVDVLILCMG 69 (324)
T ss_pred CC-CcEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHHHHh---h-cC---CccccCCHHHhc---cCCCEEEEcCC
Confidence 64 57999999999999999999876 78877 589985 4332 1 11 122334555554 34999999999
Q ss_pred CCchHHHHHHhhcccCCCCCEEEcCCC
Q psy9637 78 AGSAVDDFIDKLVPLLEKGDIIIDGGN 104 (490)
Q Consensus 78 ~~~~v~~vl~~l~~~l~~g~iiId~s~ 104 (490)
+....+. +.+.|..|.-|||...
T Consensus 70 s~th~~~----~~~~L~aG~NVV~s~~ 92 (324)
T TIGR01921 70 SATDIPE----QAPYFAQFANTVDSFD 92 (324)
T ss_pred CccCHHH----HHHHHHcCCCEEECCC
Confidence 8765443 3344667888888754
|
This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized. |
| >PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3 | Back alignment and domain information |
|---|
Probab=97.91 E-value=5e-05 Score=69.05 Aligned_cols=91 Identities=12% Similarity=0.214 Sum_probs=63.0
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
+++.|+|.|..|+.+|+.|...|.+|++++++|-+.-+....|.. +.+.++++.. +|++|.++.....+.
T Consensus 24 k~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~dGf~------v~~~~~a~~~---adi~vtaTG~~~vi~- 93 (162)
T PF00670_consen 24 KRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAAMDGFE------VMTLEEALRD---ADIFVTATGNKDVIT- 93 (162)
T ss_dssp SEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT-E------EE-HHHHTTT----SEEEE-SSSSSSB--
T ss_pred CEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhhhcCcE------ecCHHHHHhh---CCEEEECCCCccccC-
Confidence 579999999999999999999999999999999877666655543 4577887776 999998877643322
Q ss_pred HHHhhcccCCCCCEEEcCCCCCh
Q psy9637 85 FIDKLVPLLEKGDIIIDGGNSEY 107 (490)
Q Consensus 85 vl~~l~~~l~~g~iiId~s~~~~ 107 (490)
.+.++.+++|.++.+.+....
T Consensus 94 --~e~~~~mkdgail~n~Gh~d~ 114 (162)
T PF00670_consen 94 --GEHFRQMKDGAILANAGHFDV 114 (162)
T ss_dssp --HHHHHHS-TTEEEEESSSSTT
T ss_pred --HHHHHHhcCCeEEeccCcCce
Confidence 233445788999999987543
|
3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C .... |
| >TIGR00936 ahcY adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00012 Score=76.58 Aligned_cols=99 Identities=13% Similarity=0.172 Sum_probs=73.2
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
.+|+|+|+|.+|..+|..+...|.+|+++|+++.+.......|.. ..++++++.. +|+||.++.. ..
T Consensus 196 k~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~~------v~~leeal~~---aDVVItaTG~----~~ 262 (406)
T TIGR00936 196 KTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMDGFR------VMTMEEAAKI---GDIFITATGN----KD 262 (406)
T ss_pred CEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcCCE------eCCHHHHHhc---CCEEEECCCC----HH
Confidence 589999999999999999999999999999999876555544432 3456776655 8999987654 34
Q ss_pred HHH-hhcccCCCCCEEEcCCCCCh-HHHHHHHHH
Q psy9637 85 FID-KLVPLLEKGDIIIDGGNSEY-QDTDRRSKA 116 (490)
Q Consensus 85 vl~-~l~~~l~~g~iiId~s~~~~-~~~~~~~~~ 116 (490)
++. .....+++|.++++.|-... -+...+.+.
T Consensus 263 vI~~~~~~~mK~GailiN~G~~~~eId~~aL~~~ 296 (406)
T TIGR00936 263 VIRGEHFENMKDGAIVANIGHFDVEIDVKALEEL 296 (406)
T ss_pred HHHHHHHhcCCCCcEEEEECCCCceeCHHHHHHH
Confidence 443 46677889999999987543 333333333
|
This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704). |
| >PRK06407 ornithine cyclodeaminase; Provisional | Back alignment and domain information |
|---|
Probab=97.86 E-value=5.8e-05 Score=76.18 Aligned_cols=114 Identities=11% Similarity=0.190 Sum_probs=81.1
Q ss_pred CcEEEEcccHHHHHHHHHHHHC--CCeEEEEeCChHHHHHHHHcccC--CCCeeccCCHHHHHhhCCCCcEEEEecCCCc
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDH--GFTVVAYNRTTAKVDSFLANEAK--GTNIIGAHSLEELVKNLKKPRRVMMLVKAGS 80 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~--G~~V~v~dr~~~~~~~l~~~g~~--~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~ 80 (490)
.+++|||+|.+|...+..+..- =-+|.+|||++++.++|.+.-.. +..+..++++++++.. +|+|++++++.+
T Consensus 118 ~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~~~~~eav~~---aDIV~taT~s~~ 194 (301)
T PRK06407 118 ENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEFGVDIRPVDNAEAALRD---ADTITSITNSDT 194 (301)
T ss_pred cEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhc---CCEEEEecCCCC
Confidence 5799999999999998888753 24799999999999988765321 2346678999999987 999999999875
Q ss_pred hHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHH-HHHHHcccccccc
Q psy9637 81 AVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRS-KALEAKGLLYVGC 127 (490)
Q Consensus 81 ~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~-~~l~~~gi~~ld~ 127 (490)
++ ++ ...++||..|.-.|+..|. ..++. +.+......|+|.
T Consensus 195 P~---~~--~~~l~pg~hV~aiGs~~p~-~~El~~~~l~~a~~v~vD~ 236 (301)
T PRK06407 195 PI---FN--RKYLGDEYHVNLAGSNYPN-RREAEHSVLNDADIVVTEH 236 (301)
T ss_pred cE---ec--HHHcCCCceEEecCCCCCC-cccCCHHHHHhCCEEEECC
Confidence 43 21 1246789888888876543 33333 3333333456664
|
|
| >PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00015 Score=83.62 Aligned_cols=120 Identities=9% Similarity=0.099 Sum_probs=85.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCC-Ce-------------EEEEeCChHHHHHHHHcccCCCCeec-cCCHHHHHhhCCC
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHG-FT-------------VVAYNRTTAKVDSFLANEAKGTNIIG-AHSLEELVKNLKK 68 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G-~~-------------V~v~dr~~~~~~~l~~~g~~~~~i~~-~~s~~e~v~~l~~ 68 (490)
+++|+|||+|.||...+..|++.. ++ |++.|+++++++++.+.......+.. +.+.+++.+.++.
T Consensus 569 ~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~~v~~ 648 (1042)
T PLN02819 569 SQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLKYVSQ 648 (1042)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHHHHhhcC
Confidence 468999999999999999998753 33 89999999998887764211111233 5788888776667
Q ss_pred CcEEEEecCCCchHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccccc-ccC
Q psy9637 69 PRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYV-GCG 128 (490)
Q Consensus 69 ~dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~l-d~~ 128 (490)
+|+|++|+|.. -...++... ++.|.-+++.+- ...+..++.+.+++.|+.++ +++
T Consensus 649 ~DaVIsalP~~-~H~~VAkaA---ieaGkHvv~eky-~~~e~~~L~e~Ak~AGV~~m~e~G 704 (1042)
T PLN02819 649 VDVVISLLPAS-CHAVVAKAC---IELKKHLVTASY-VSEEMSALDSKAKEAGITILCEMG 704 (1042)
T ss_pred CCEEEECCCch-hhHHHHHHH---HHcCCCEEECcC-CHHHHHHHHHHHHHcCCEEEECCc
Confidence 99999999995 334444433 456778888873 34566666677788887653 444
|
|
| >PRK07340 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.84 E-value=8.3e-05 Score=75.24 Aligned_cols=93 Identities=19% Similarity=0.202 Sum_probs=72.1
Q ss_pred CcEEEEcccHHHHHHHHHHHH-CC-CeEEEEeCChHHHHHHHHcccC-CCCeeccCCHHHHHhhCCCCcEEEEecCCCch
Q psy9637 5 GDIGLIGLAVMGQNLILNMND-HG-FTVVAYNRTTAKVDSFLANEAK-GTNIIGAHSLEELVKNLKKPRRVMMLVKAGSA 81 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~-~G-~~V~v~dr~~~~~~~l~~~g~~-~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~ 81 (490)
.+|+|||+|.+|...+..+.. .+ .+|.+|||++++.+.|.+.-.. +..+. +.+.++++.+ +|+|+.++|+..+
T Consensus 126 ~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~-~~~~~~av~~---aDiVitaT~s~~P 201 (304)
T PRK07340 126 GDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGPTAE-PLDGEAIPEA---VDLVVTATTSRTP 201 (304)
T ss_pred CEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCCeeE-ECCHHHHhhc---CCEEEEccCCCCc
Confidence 579999999999999999975 45 4799999999999988865321 11222 5788888876 9999999999764
Q ss_pred HHHHHHhhcccCCCCCEEEcCCCCCh
Q psy9637 82 VDDFIDKLVPLLEKGDIIIDGGNSEY 107 (490)
Q Consensus 82 v~~vl~~l~~~l~~g~iiId~s~~~~ 107 (490)
+ +.. .+++|..|+-.|+..|
T Consensus 202 l---~~~---~~~~g~hi~~iGs~~p 221 (304)
T PRK07340 202 V---YPE---AARAGRLVVAVGAFTP 221 (304)
T ss_pred e---eCc---cCCCCCEEEecCCCCC
Confidence 3 332 3689999999887665
|
|
| >COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00016 Score=68.53 Aligned_cols=110 Identities=20% Similarity=0.322 Sum_probs=74.9
Q ss_pred CcEEEEcccHHHHHHHHHHHHC--CC-eEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCch
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDH--GF-TVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSA 81 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~--G~-~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~ 81 (490)
++||+||+|.+|..+...+.+. .+ .|.+|||+.+++..+.+.-.. ..++++.|+++. +|+++-|-.. ++
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~~----~~~s~ide~~~~---~DlvVEaAS~-~A 72 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVGR----RCVSDIDELIAE---VDLVVEAASP-EA 72 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhcCC----CccccHHHHhhc---cceeeeeCCH-HH
Confidence 4799999999999998776643 24 467899999999987764332 245889998865 9999999766 57
Q ss_pred HHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccc
Q psy9637 82 VDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLL 123 (490)
Q Consensus 82 v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~ 123 (490)
+++...+++.. ..+-+|+..|.-..+...++...+.+.+-+
T Consensus 73 v~e~~~~~L~~-g~d~iV~SVGALad~~l~erl~~lak~~~~ 113 (255)
T COG1712 73 VREYVPKILKA-GIDVIVMSVGALADEGLRERLRELAKCGGA 113 (255)
T ss_pred HHHHhHHHHhc-CCCEEEEechhccChHHHHHHHHHHhcCCc
Confidence 77776555432 123455555554444455555555555443
|
|
| >TIGR01035 hemA glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=97.82 E-value=9e-05 Score=78.30 Aligned_cols=95 Identities=18% Similarity=0.198 Sum_probs=65.3
Q ss_pred CcEEEEcccHHHHHHHHHHHHCC-CeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchH-
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHG-FTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAV- 82 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G-~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v- 82 (490)
.+|+|||+|.||..++..|...| .+|+++||++++.+.+.+.... ......++.+.+.. +|+||.|++.+..+
T Consensus 181 ~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~--~~i~~~~l~~~l~~---aDvVi~aT~s~~~ii 255 (417)
T TIGR01035 181 KKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGG--EAVKFEDLEEYLAE---ADIVISSTGAPHPIV 255 (417)
T ss_pred CEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCC--eEeeHHHHHHHHhh---CCEEEECCCCCCceE
Confidence 58999999999999999999999 7899999999988877654221 11123344555554 99999999876543
Q ss_pred -HHHHHhhcccCCCCCEEEcCCC
Q psy9637 83 -DDFIDKLVPLLEKGDIIIDGGN 104 (490)
Q Consensus 83 -~~vl~~l~~~l~~g~iiId~s~ 104 (490)
.+.+......-....+++|.+.
T Consensus 256 ~~e~l~~~~~~~~~~~~viDla~ 278 (417)
T TIGR01035 256 SKEDVERALRERTRPLFIIDIAV 278 (417)
T ss_pred cHHHHHHHHhcCCCCeEEEEeCC
Confidence 1223322211112358889874
|
This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA. |
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0001 Score=77.39 Aligned_cols=90 Identities=12% Similarity=0.142 Sum_probs=70.3
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
.+|+|+|+|.+|..+|..|...|.+|+++|+++.+.......|.. ..+++++++. +|+||.++.. ..
T Consensus 213 k~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G~~------v~~l~eal~~---aDVVI~aTG~----~~ 279 (425)
T PRK05476 213 KVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAMDGFR------VMTMEEAAEL---GDIFVTATGN----KD 279 (425)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhcCCE------ecCHHHHHhC---CCEEEECCCC----HH
Confidence 579999999999999999999999999999999876555444432 3467777665 9999988744 33
Q ss_pred HHH-hhcccCCCCCEEEcCCCCCh
Q psy9637 85 FID-KLVPLLEKGDIIIDGGNSEY 107 (490)
Q Consensus 85 vl~-~l~~~l~~g~iiId~s~~~~ 107 (490)
+++ ..+..+++|.++++.|....
T Consensus 280 vI~~~~~~~mK~GailiNvG~~d~ 303 (425)
T PRK05476 280 VITAEHMEAMKDGAILANIGHFDN 303 (425)
T ss_pred HHHHHHHhcCCCCCEEEEcCCCCC
Confidence 453 56677899999999987543
|
|
| >PRK08618 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.81 E-value=8.3e-05 Score=75.95 Aligned_cols=95 Identities=20% Similarity=0.198 Sum_probs=72.2
Q ss_pred CcEEEEcccHHHHHHHHHHHH-CC-CeEEEEeCChHHHHHHHHcccC--CCCeeccCCHHHHHhhCCCCcEEEEecCCCc
Q psy9637 5 GDIGLIGLAVMGQNLILNMND-HG-FTVVAYNRTTAKVDSFLANEAK--GTNIIGAHSLEELVKNLKKPRRVMMLVKAGS 80 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~-~G-~~V~v~dr~~~~~~~l~~~g~~--~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~ 80 (490)
.+|+|||+|.+|...+..++. .+ .+|.+|||++++.+++.+.-.. +..+..++++++++.. +|+|++|+|...
T Consensus 128 ~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~---aDiVi~aT~s~~ 204 (325)
T PRK08618 128 KTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADEAIEE---ADIIVTVTNAKT 204 (325)
T ss_pred cEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhc---CCEEEEccCCCC
Confidence 579999999999998877753 34 4799999999999988763211 1234457888888876 999999999874
Q ss_pred hHHHHHHhhcccCCCCCEEEcCCCCChH
Q psy9637 81 AVDDFIDKLVPLLEKGDIIIDGGNSEYQ 108 (490)
Q Consensus 81 ~v~~vl~~l~~~l~~g~iiId~s~~~~~ 108 (490)
+ ++. ..+++|..|+-.|+..|.
T Consensus 205 p---~i~---~~l~~G~hV~~iGs~~p~ 226 (325)
T PRK08618 205 P---VFS---EKLKKGVHINAVGSFMPD 226 (325)
T ss_pred c---chH---HhcCCCcEEEecCCCCcc
Confidence 4 333 456899999998886653
|
|
| >cd05292 LDH_2 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0002 Score=72.65 Aligned_cols=94 Identities=15% Similarity=0.201 Sum_probs=61.0
Q ss_pred CcEEEEcccHHHHHHHHHHHHCC--CeEEEEeCChHHHHH----HHHcccC--CCCeeccCCHHHHHhhCCCCcEEEEec
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHG--FTVVAYNRTTAKVDS----FLANEAK--GTNIIGAHSLEELVKNLKKPRRVMMLV 76 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G--~~V~v~dr~~~~~~~----l~~~g~~--~~~i~~~~s~~e~v~~l~~~dvIil~v 76 (490)
|||+|||+|.+|..+|..|+.+| .+|.++|+++++.+. +...... ...+ .+.+.++ ++.+|+||+++
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i-~~~d~~~----l~~aDiViita 75 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRI-YAGDYAD----CKGADVVVITA 75 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEE-eeCCHHH----hCCCCEEEEcc
Confidence 48999999999999999999999 689999999877653 2211100 0111 2344443 33499999999
Q ss_pred CCCch---------------HHHHHHhhcccCCCCCEEEcCCC
Q psy9637 77 KAGSA---------------VDDFIDKLVPLLEKGDIIIDGGN 104 (490)
Q Consensus 77 p~~~~---------------v~~vl~~l~~~l~~g~iiId~s~ 104 (490)
+.+.. ++++.+.+..+- +..+++-.+|
T Consensus 76 ~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~-~~giiiv~tN 117 (308)
T cd05292 76 GANQKPGETRLDLLKRNVAIFKEIIPQILKYA-PDAILLVVTN 117 (308)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecC
Confidence 86421 334445555554 4445555555
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ] | Back alignment and domain information |
|---|
Probab=97.80 E-value=7.2e-05 Score=65.45 Aligned_cols=107 Identities=21% Similarity=0.299 Sum_probs=69.1
Q ss_pred CcEEEEcc-cHHHHHHHHHHHH-CCCeEE-EEeCChH-HH----HHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEec
Q psy9637 5 GDIGLIGL-AVMGQNLILNMND-HGFTVV-AYNRTTA-KV----DSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLV 76 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~-~G~~V~-v~dr~~~-~~----~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~v 76 (490)
|||+|+|+ |+||+.++..+.+ .++++. ++|++++ .. ..+.... ...+...++++++.+. +|+||-..
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~--~~~~~v~~~l~~~~~~---~DVvIDfT 75 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIG--PLGVPVTDDLEELLEE---ADVVIDFT 75 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSS--T-SSBEBS-HHHHTTH----SEEEEES
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcC--CcccccchhHHHhccc---CCEEEEcC
Confidence 48999999 9999999999998 788865 5788862 11 1111111 2234467889998887 89998776
Q ss_pred CCCchHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHc
Q psy9637 77 KAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAK 120 (490)
Q Consensus 77 p~~~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~ 120 (490)
.+..+.+.++.++. .|.-+|-++|.......+..+.+.++
T Consensus 76 -~p~~~~~~~~~~~~---~g~~~ViGTTG~~~~~~~~l~~~a~~ 115 (124)
T PF01113_consen 76 -NPDAVYDNLEYALK---HGVPLVIGTTGFSDEQIDELEELAKK 115 (124)
T ss_dssp --HHHHHHHHHHHHH---HT-EEEEE-SSSHHHHHHHHHHHTTT
T ss_pred -ChHHhHHHHHHHHh---CCCCEEEECCCCCHHHHHHHHHHhcc
Confidence 33456665555544 47888888888765555555665554
|
In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A .... |
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=97.80 E-value=6.9e-05 Score=77.85 Aligned_cols=98 Identities=21% Similarity=0.276 Sum_probs=68.6
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCee-ccCCHHHHHhhCCCCcEEEEecCCC-chH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNII-GAHSLEELVKNLKKPRRVMMLVKAG-SAV 82 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~-~~~s~~e~v~~l~~~dvIil~vp~~-~~v 82 (490)
.+|.|||.|.+|...+..+...|.+|+++||++++.+.+...... .+. ...+.+++.+.++.+|+||.+++.+ ...
T Consensus 168 ~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~--~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~~~ 245 (370)
T TIGR00518 168 GDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGG--RIHTRYSNAYEIEDAVKRADLLIGAVLIPGAKA 245 (370)
T ss_pred ceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCc--eeEeccCCHHHHHHHHccCCEEEEccccCCCCC
Confidence 469999999999999999999999999999999988877654321 111 1234455555555699999997431 111
Q ss_pred HHHH-HhhcccCCCCCEEEcCCC
Q psy9637 83 DDFI-DKLVPLLEKGDIIIDGGN 104 (490)
Q Consensus 83 ~~vl-~~l~~~l~~g~iiId~s~ 104 (490)
..++ .+.+..++++.+|||.+.
T Consensus 246 p~lit~~~l~~mk~g~vIvDva~ 268 (370)
T TIGR00518 246 PKLVSNSLVAQMKPGAVIVDVAI 268 (370)
T ss_pred CcCcCHHHHhcCCCCCEEEEEec
Confidence 1112 444556788999999764
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00012 Score=65.45 Aligned_cols=120 Identities=19% Similarity=0.289 Sum_probs=77.3
Q ss_pred cEEEEcccHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHcccC-CCCe--eccCCHHHHHhhCCCCcEEEEecCCCch
Q psy9637 6 DIGLIGLAVMGQNLILNMNDHGF-TVVAYNRTTAKVDSFLANEAK-GTNI--IGAHSLEELVKNLKKPRRVMMLVKAGSA 81 (490)
Q Consensus 6 ~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~g~~-~~~i--~~~~s~~e~v~~l~~~dvIil~vp~~~~ 81 (490)
+|.|||+|.+|..++.+|++.|+ +++++|.+.-....+...... ...+ .-++...+.+.++. |++-+.+.+....
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~-p~v~i~~~~~~~~ 79 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELN-PGVNVTAVPEGIS 79 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHC-CCcEEEEEeeecC
Confidence 58999999999999999999998 699999874333333221110 0000 11233344444332 5666666655322
Q ss_pred HHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCC
Q psy9637 82 VDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSG 131 (490)
Q Consensus 82 v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsG 131 (490)
.... ...+.+-++||++... +.....+.+.+.+.++.|+++++.|
T Consensus 80 ~~~~----~~~~~~~diVi~~~d~-~~~~~~l~~~~~~~~i~~i~~~~~g 124 (143)
T cd01483 80 EDNL----DDFLDGVDLVIDAIDN-IAVRRALNRACKELGIPVIDAGGLG 124 (143)
T ss_pred hhhH----HHHhcCCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 2111 3345678999999886 4555666688888999999999877
|
This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. |
| >KOG2711|consensus | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00018 Score=71.99 Aligned_cols=98 Identities=13% Similarity=0.212 Sum_probs=73.9
Q ss_pred CcEEEEcccHHHHHHHHHHHHC--CC-----eEEEEeCCh------HHHHHHHHcccC----------CCCeeccCCHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDH--GF-----TVVAYNRTT------AKVDSFLANEAK----------GTNIIGAHSLEE 61 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~--G~-----~V~v~dr~~------~~~~~l~~~g~~----------~~~i~~~~s~~e 61 (490)
.||+|||.|++|+.+|+.+.++ ++ +|..|-+.. +++-+....... +.++.+.+++.+
T Consensus 22 ~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~dl~e 101 (372)
T KOG2711|consen 22 LKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVPDLVE 101 (372)
T ss_pred eEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecchHHH
Confidence 5899999999999999998864 22 466664332 222222221111 456778889988
Q ss_pred HHhhCCCCcEEEEecCCCchHHHHHHhhcccCCCCCEEEcCCCCC
Q psy9637 62 LVKNLKKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 62 ~v~~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~s~~~ 106 (490)
++.+ +|+++..||. +.+..++++|..+++++.+.|.+..+.
T Consensus 102 a~~d---ADilvf~vPh-Qf~~~ic~~l~g~vk~~~~aISL~KG~ 142 (372)
T KOG2711|consen 102 AAKD---ADILVFVVPH-QFIPRICEQLKGYVKPGATAISLIKGV 142 (372)
T ss_pred Hhcc---CCEEEEeCCh-hhHHHHHHHHhcccCCCCeEEEeecce
Confidence 8877 9999999999 689999999999999999999887664
|
|
| >PRK00045 hemA glutamyl-tRNA reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.78 E-value=7.5e-05 Score=79.03 Aligned_cols=95 Identities=15% Similarity=0.241 Sum_probs=65.8
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchH-
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGF-TVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAV- 82 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v- 82 (490)
++|+|||+|.||..++..|...|+ +|+++||++++.+.+.+.... .+....++.+.+ ..+|+||.|++.+..+
T Consensus 183 ~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~--~~~~~~~~~~~l---~~aDvVI~aT~s~~~~i 257 (423)
T PRK00045 183 KKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGG--EAIPLDELPEAL---AEADIVISSTGAPHPII 257 (423)
T ss_pred CEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCC--cEeeHHHHHHHh---ccCCEEEECCCCCCcEE
Confidence 589999999999999999999997 799999999998877765321 122223334444 4499999999886543
Q ss_pred -HHHHHhhcc-cCCCCCEEEcCCC
Q psy9637 83 -DDFIDKLVP-LLEKGDIIIDGGN 104 (490)
Q Consensus 83 -~~vl~~l~~-~l~~g~iiId~s~ 104 (490)
.+.+..... .-..+.++||.+.
T Consensus 258 ~~~~l~~~~~~~~~~~~vviDla~ 281 (423)
T PRK00045 258 GKGMVERALKARRHRPLLLVDLAV 281 (423)
T ss_pred cHHHHHHHHhhccCCCeEEEEeCC
Confidence 223332221 1124578999975
|
|
| >PRK06823 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.77 E-value=9.9e-05 Score=74.97 Aligned_cols=114 Identities=9% Similarity=0.199 Sum_probs=80.2
Q ss_pred CcEEEEcccHHHHHHHHHHHHC--CCeEEEEeCChHHHHHHHHcccC-CCCeeccCCHHHHHhhCCCCcEEEEecCCCch
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDH--GFTVVAYNRTTAKVDSFLANEAK-GTNIIGAHSLEELVKNLKKPRRVMMLVKAGSA 81 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~--G~~V~v~dr~~~~~~~l~~~g~~-~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~ 81 (490)
.+++|||+|.++...++.+..- --+|.+|||++++.++|.+.-.. +.++..++++++++.. +|+|++++++..+
T Consensus 129 ~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~---ADIV~taT~s~~P 205 (315)
T PRK06823 129 SAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQALGFAVNTTLDAAEVAHA---ANLIVTTTPSREP 205 (315)
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEECCHHHHhcC---CCEEEEecCCCCc
Confidence 5799999999999988887753 35899999999999988754321 2345668899999887 9999999988754
Q ss_pred HHHHHHhhcccCCCCCEEEcCCCCChHHHHHHH-HHHHHcccccccc
Q psy9637 82 VDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRS-KALEAKGLLYVGC 127 (490)
Q Consensus 82 v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~-~~l~~~gi~~ld~ 127 (490)
+ ++ ...+++|..|+-.|+..| ..+++- +.+......|+|-
T Consensus 206 ~---~~--~~~l~~G~hi~~iGs~~p-~~~Eld~~~l~~a~~vvvD~ 246 (315)
T PRK06823 206 L---LQ--AEDIQPGTHITAVGADSP-GKQELDAELVARADKILVDS 246 (315)
T ss_pred e---eC--HHHcCCCcEEEecCCCCc-ccccCCHHHHhhCCEEEECC
Confidence 3 31 125679999998887654 233333 3333333345554
|
|
| >TIGR02992 ectoine_eutC ectoine utilization protein EutC | Back alignment and domain information |
|---|
Probab=97.77 E-value=8.6e-05 Score=75.87 Aligned_cols=94 Identities=11% Similarity=0.211 Sum_probs=70.5
Q ss_pred CcEEEEcccHHHHHHHHHHHH-CC-CeEEEEeCChHHHHHHHHcccC--CCCeeccCCHHHHHhhCCCCcEEEEecCCCc
Q psy9637 5 GDIGLIGLAVMGQNLILNMND-HG-FTVVAYNRTTAKVDSFLANEAK--GTNIIGAHSLEELVKNLKKPRRVMMLVKAGS 80 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~-~G-~~V~v~dr~~~~~~~l~~~g~~--~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~ 80 (490)
.+++|||+|.+|...+..|.. .+ -+|.+|||++++.+.|.+.-.. +..+..++++++++.. +|+|+.++|...
T Consensus 130 ~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v~~~~~~~~av~~---aDiVvtaT~s~~ 206 (326)
T TIGR02992 130 SVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLLGIDVTAATDPRAAMSG---ADIIVTTTPSET 206 (326)
T ss_pred cEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhcc---CCEEEEecCCCC
Confidence 579999999999999999973 56 4699999999999988764311 1234457888888876 999999999864
Q ss_pred hHHHHHHhhcccCCCCCEEEcCCCCC
Q psy9637 81 AVDDFIDKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 81 ~v~~vl~~l~~~l~~g~iiId~s~~~ 106 (490)
+ ++. ...+++|..|...+.-.
T Consensus 207 p---~i~--~~~l~~g~~i~~vg~~~ 227 (326)
T TIGR02992 207 P---ILH--AEWLEPGQHVTAMGSDA 227 (326)
T ss_pred c---Eec--HHHcCCCcEEEeeCCCC
Confidence 3 221 12467898888777543
|
Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423). |
| >PRK11579 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00026 Score=72.86 Aligned_cols=112 Identities=13% Similarity=0.162 Sum_probs=73.3
Q ss_pred CCCCCcEEEEcccHHHHH-HHHHHHHC-CCeEE-EEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecC
Q psy9637 1 MAAKGDIGLIGLAVMGQN-LILNMNDH-GFTVV-AYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVK 77 (490)
Q Consensus 1 M~~~~~IgiIGlG~MG~~-lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp 77 (490)
|+.++||||||+|.||.. .+..+.+. +++++ ++|+++++... ... .+..+++++++++. ++.|+|++|+|
T Consensus 1 m~~~irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~~~~~--~~~----~~~~~~~~~ell~~-~~vD~V~I~tp 73 (346)
T PRK11579 1 MSDKIRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDATKVKA--DWP----TVTVVSEPQHLFND-PNIDLIVIPTP 73 (346)
T ss_pred CCCcceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHHHHHh--hCC----CCceeCCHHHHhcC-CCCCEEEEcCC
Confidence 766789999999999985 55666553 67765 68999876542 111 12357899999874 34799999999
Q ss_pred CCchHHHHHHhhcccCCCCCEEE-c--CCCCChHHHHHHHHHHHHccccc
Q psy9637 78 AGSAVDDFIDKLVPLLEKGDIII-D--GGNSEYQDTDRRSKALEAKGLLY 124 (490)
Q Consensus 78 ~~~~v~~vl~~l~~~l~~g~iiI-d--~s~~~~~~~~~~~~~l~~~gi~~ 124 (490)
+....+-++.. ++.|+-|+ + ... ...+..++.+.++++|+.+
T Consensus 74 ~~~H~~~~~~a----l~aGkhVl~EKPla~-t~~ea~~l~~~a~~~g~~l 118 (346)
T PRK11579 74 NDTHFPLAKAA----LEAGKHVVVDKPFTV-TLSQARELDALAKSAGRVL 118 (346)
T ss_pred cHHHHHHHHHH----HHCCCeEEEeCCCCC-CHHHHHHHHHHHHHhCCEE
Confidence 97554444433 34565444 4 222 3355666667667666543
|
|
| >TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00015 Score=72.50 Aligned_cols=117 Identities=15% Similarity=0.057 Sum_probs=74.6
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGF-TVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
+++.|||.|-+|++++..|++.|. +|+++||++++.+.+.+.......+....+..++...+..+|+||-|+|.+...+
T Consensus 126 k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~DiVInaTp~g~~~~ 205 (282)
T TIGR01809 126 FRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVGVITRLEGDSGGLAIEKAAEVLVSTVPADVPAD 205 (282)
T ss_pred ceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcCcceeccchhhhhhcccCCCEEEECCCCCCCCC
Confidence 479999999999999999999997 6999999999999887643211112222233333333445899999999886543
Q ss_pred HH-HHhhc-----ccCCCCCEEEcCCCCChHHHHHHHHHHHHcccc
Q psy9637 84 DF-IDKLV-----PLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLL 123 (490)
Q Consensus 84 ~v-l~~l~-----~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~ 123 (490)
.. +.... ..+.++.+++|.--. |..| ...+..+++|..
T Consensus 206 ~~~l~~~~~~~~~~~~~~~~~v~D~vY~-P~~T-~ll~~A~~~G~~ 249 (282)
T TIGR01809 206 YVDLFATVPFLLLKRKSSEGIFLDAAYD-PWPT-PLVAIVSAAGWR 249 (282)
T ss_pred HHHhhhhhhhhccccCCCCcEEEEEeeC-CCCC-HHHHHHHHCCCE
Confidence 21 11110 123467889998643 2332 233444555643
|
This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway. |
| >PRK13301 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00024 Score=69.58 Aligned_cols=88 Identities=13% Similarity=0.162 Sum_probs=63.4
Q ss_pred CcEEEEcccHHHHHHHHHHHHCC---CeE-EEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCc
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHG---FTV-VAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGS 80 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G---~~V-~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~ 80 (490)
+||||||+|.||..++..|.+.+ +++ .+|+|++++.+.+... ...++++++++.. ++|+|+-|-.. +
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~~------~~~~~~l~~ll~~--~~DlVVE~A~~-~ 73 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAGR------VALLDGLPGLLAW--RPDLVVEAAGQ-Q 73 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhcc------CcccCCHHHHhhc--CCCEEEECCCH-H
Confidence 58999999999999999987542 443 4689998888887643 2368899997532 39999999876 4
Q ss_pred hHHHHHHhhcccCCCCCEEEcCCC
Q psy9637 81 AVDDFIDKLVPLLEKGDIIIDGGN 104 (490)
Q Consensus 81 ~v~~vl~~l~~~l~~g~iiId~s~ 104 (490)
++++....++ ..|.-++-+|.
T Consensus 74 av~e~~~~iL---~~g~dlvv~Sv 94 (267)
T PRK13301 74 AIAEHAEGCL---TAGLDMIICSA 94 (267)
T ss_pred HHHHHHHHHH---hcCCCEEEECh
Confidence 7777666554 44543444443
|
|
| >COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00037 Score=71.16 Aligned_cols=112 Identities=15% Similarity=0.210 Sum_probs=78.1
Q ss_pred CCCcEEEEcccHH-HHHHHHHHHHCCC---eEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCC
Q psy9637 3 AKGDIGLIGLAVM-GQNLILNMNDHGF---TVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKA 78 (490)
Q Consensus 3 ~~~~IgiIGlG~M-G~~lA~~L~~~G~---~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~ 78 (490)
+++||||||+|.+ +...+..+.+.+. -|.++|+++++++.+.+..... ..++|++++++. ++.|+|++++|+
T Consensus 2 ~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~~---~~~~~~~~ll~~-~~iD~V~Iatp~ 77 (342)
T COG0673 2 KMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFGIA---KAYTDLEELLAD-PDIDAVYIATPN 77 (342)
T ss_pred CeeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcCCC---cccCCHHHHhcC-CCCCEEEEcCCC
Confidence 3579999999944 4668888888763 4667899999999888764421 368899999986 336999999999
Q ss_pred CchHHHHHHhhcccCCCCCE-EEc--CCCCChHHHHHHHHHHHHcccc
Q psy9637 79 GSAVDDFIDKLVPLLEKGDI-IID--GGNSEYQDTDRRSKALEAKGLL 123 (490)
Q Consensus 79 ~~~v~~vl~~l~~~l~~g~i-iId--~s~~~~~~~~~~~~~l~~~gi~ 123 (490)
....+-++.. |..|+- +++ .+. ...+..++.+..+++|..
T Consensus 78 ~~H~e~~~~A----L~aGkhVl~EKPla~-t~~ea~~l~~~a~~~~~~ 120 (342)
T COG0673 78 ALHAELALAA----LEAGKHVLCEKPLAL-TLEEAEELVELARKAGVK 120 (342)
T ss_pred hhhHHHHHHH----HhcCCEEEEcCCCCC-CHHHHHHHHHHHHHcCCc
Confidence 7665555443 445554 444 233 346677777776666653
|
|
| >PLN02494 adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00018 Score=75.93 Aligned_cols=88 Identities=15% Similarity=0.143 Sum_probs=68.4
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
++|+|+|+|.+|..+|..+...|.+|+++++++.+.......+.. ..++++++.. +|+|+.+..+. .
T Consensus 255 KtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~------vv~leEal~~---ADVVI~tTGt~----~ 321 (477)
T PLN02494 255 KVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALMEGYQ------VLTLEDVVSE---ADIFVTTTGNK----D 321 (477)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcCCe------eccHHHHHhh---CCEEEECCCCc----c
Confidence 579999999999999999999999999999998775554444432 2367777766 89999865443 3
Q ss_pred HH-HhhcccCCCCCEEEcCCCC
Q psy9637 85 FI-DKLVPLLEKGDIIIDGGNS 105 (490)
Q Consensus 85 vl-~~l~~~l~~g~iiId~s~~ 105 (490)
++ .+.+..+++|.++++.|..
T Consensus 322 vI~~e~L~~MK~GAiLiNvGr~ 343 (477)
T PLN02494 322 IIMVDHMRKMKNNAIVCNIGHF 343 (477)
T ss_pred chHHHHHhcCCCCCEEEEcCCC
Confidence 32 4556678899999999874
|
|
| >PRK00258 aroE shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.72 E-value=7.9e-05 Score=74.42 Aligned_cols=116 Identities=20% Similarity=0.142 Sum_probs=75.0
Q ss_pred CcEEEEcccHHHHHHHHHHHHCC-CeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHG-FTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G-~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
.++.|+|.|.+|..++..|+..| .+|+++||+.++.+.+.+.......+....+..+ .+..+|+||.++|.+..-.
T Consensus 124 k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~~~~~~~~~~~---~~~~~DivInaTp~g~~~~ 200 (278)
T PRK00258 124 KRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALGKAELDLELQE---ELADFDLIINATSAGMSGE 200 (278)
T ss_pred CEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccceeecccchh---ccccCCEEEECCcCCCCCC
Confidence 57999999999999999999999 7999999999999888764321100111012222 2344899999999874211
Q ss_pred HHHHhh-cccCCCCCEEEcCCCCChHHHHHHHHHHHHcccccc
Q psy9637 84 DFIDKL-VPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYV 125 (490)
Q Consensus 84 ~vl~~l-~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~l 125 (490)
.-...+ ...++++.+|+|..- .|..| ...+..+++|+..+
T Consensus 201 ~~~~~~~~~~l~~~~~v~DivY-~P~~T-~ll~~A~~~G~~~~ 241 (278)
T PRK00258 201 LPLPPLPLSLLRPGTIVYDMIY-GPLPT-PFLAWAKAQGARTI 241 (278)
T ss_pred CCCCCCCHHHcCCCCEEEEeec-CCCCC-HHHHHHHHCcCeec
Confidence 000001 124677899999965 34333 34455666776443
|
|
| >PRK13303 L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00022 Score=70.76 Aligned_cols=108 Identities=17% Similarity=0.192 Sum_probs=66.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHHC-CCeEE-EEeCC--hHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCC
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDH-GFTVV-AYNRT--TAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAG 79 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~-G~~V~-v~dr~--~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~ 79 (490)
|+||||||+|.||..+++.+.+. +.++. ++++. .++....... .+..+++++++ . +++|+|+.|.|..
T Consensus 1 m~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~~~-----~~~~~~d~~~l-~--~~~DvVve~t~~~ 72 (265)
T PRK13303 1 MMKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRALGE-----AVRVVSSVDAL-P--QRPDLVVECAGHA 72 (265)
T ss_pred CcEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhhhcc-----CCeeeCCHHHh-c--cCCCEEEECCCHH
Confidence 36999999999999999999876 45554 34443 2332222211 23457888887 3 3589999999985
Q ss_pred chHHHHHHhhcccCCCCCEEEcCCCC---ChHHHHHHHHHHHHcccc
Q psy9637 80 SAVDDFIDKLVPLLEKGDIIIDGGNS---EYQDTDRRSKALEAKGLL 123 (490)
Q Consensus 80 ~~v~~vl~~l~~~l~~g~iiId~s~~---~~~~~~~~~~~l~~~gi~ 123 (490)
.+.+....+ |..|.-++..+.. .+....++.+.+++.|..
T Consensus 73 -~~~e~~~~a---L~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~g~~ 115 (265)
T PRK13303 73 -ALKEHVVPI---LKAGIDCAVISVGALADEALRERLEQAAEAGGAR 115 (265)
T ss_pred -HHHHHHHHH---HHcCCCEEEeChHHhcCHHHHHHHHHHHHHCCCE
Confidence 555554444 4566666655543 222234444555566654
|
|
| >PRK08291 ectoine utilization protein EutC; Validated | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00017 Score=73.90 Aligned_cols=94 Identities=15% Similarity=0.199 Sum_probs=69.4
Q ss_pred CcEEEEcccHHHHHHHHHHHH-CC-CeEEEEeCChHHHHHHHHcccC--CCCeeccCCHHHHHhhCCCCcEEEEecCCCc
Q psy9637 5 GDIGLIGLAVMGQNLILNMND-HG-FTVVAYNRTTAKVDSFLANEAK--GTNIIGAHSLEELVKNLKKPRRVMMLVKAGS 80 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~-~G-~~V~v~dr~~~~~~~l~~~g~~--~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~ 80 (490)
++|+|||+|.+|...+..|.. .+ .+|.+|||++++.+.+.+.... +..+..++++++++.+ +|+|+.++|...
T Consensus 133 ~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v~~~~d~~~al~~---aDiVi~aT~s~~ 209 (330)
T PRK08291 133 SRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAELGIPVTVARDVHEAVAG---ADIIVTTTPSEE 209 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhccCceEEEeCCHHHHHcc---CCEEEEeeCCCC
Confidence 589999999999998888875 44 5899999999999998764321 1234457888888876 899999998864
Q ss_pred hHHHHHHhhcccCCCCCEEEcCCCCC
Q psy9637 81 AVDDFIDKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 81 ~v~~vl~~l~~~l~~g~iiId~s~~~ 106 (490)
+ ++.. ..+++|..|...+...
T Consensus 210 p---~i~~--~~l~~g~~v~~vg~d~ 230 (330)
T PRK08291 210 P---ILKA--EWLHPGLHVTAMGSDA 230 (330)
T ss_pred c---EecH--HHcCCCceEEeeCCCC
Confidence 3 2221 1256788777766543
|
|
| >cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases | Back alignment and domain information |
|---|
Probab=97.72 E-value=9.9e-05 Score=78.10 Aligned_cols=71 Identities=13% Similarity=0.125 Sum_probs=54.3
Q ss_pred CcEEEEcccHHHHHHHH--HH----HHCCCeEEEEeCChHHHHHHHHcc-------cCCCCeeccCCHHHHHhhCCCCcE
Q psy9637 5 GDIGLIGLAVMGQNLIL--NM----NDHGFTVVAYNRTTAKVDSFLANE-------AKGTNIIGAHSLEELVKNLKKPRR 71 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~--~L----~~~G~~V~v~dr~~~~~~~l~~~g-------~~~~~i~~~~s~~e~v~~l~~~dv 71 (490)
+||+|||.|.||..++. .+ ..+|++|++||+++++.+...... ....++..++++.++++. +|+
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~~---AD~ 77 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIEATTDRREALDG---ADF 77 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhcC---CCE
Confidence 47999999999998665 34 456899999999998877654321 112356678888888776 999
Q ss_pred EEEecCC
Q psy9637 72 VMMLVKA 78 (490)
Q Consensus 72 Iil~vp~ 78 (490)
||++++.
T Consensus 78 Vi~ai~~ 84 (423)
T cd05297 78 VINTIQV 84 (423)
T ss_pred EEEeeEe
Confidence 9999985
|
linked to 3D####ucture |
| >PTZ00082 L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00026 Score=72.12 Aligned_cols=99 Identities=15% Similarity=0.240 Sum_probs=64.4
Q ss_pred CCCcEEEEcccHHHHHHHHHHHHCCC-eEEEEeCChHHHHH--H---HHc--ccCCCCeeccCCHHHHHhhCCCCcEEEE
Q psy9637 3 AKGDIGLIGLAVMGQNLILNMNDHGF-TVVAYNRTTAKVDS--F---LAN--EAKGTNIIGAHSLEELVKNLKKPRRVMM 74 (490)
Q Consensus 3 ~~~~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~--l---~~~--g~~~~~i~~~~s~~e~v~~l~~~dvIil 74 (490)
.++||+|||.|.||..+|..++..|+ +|+++|+++++.+. + ... .....++..+.+.+++ + .+|+||+
T Consensus 5 ~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~~~l-~---~aDiVI~ 80 (321)
T PTZ00082 5 KRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNYEDI-A---GSDVVIV 80 (321)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCHHHh-C---CCCEEEE
Confidence 45789999999999999999999996 99999999885431 1 110 0011245555666543 3 4999999
Q ss_pred ecCCC----c----------------hHHHHHHhhcccCCCCCEEEcCCCCC
Q psy9637 75 LVKAG----S----------------AVDDFIDKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 75 ~vp~~----~----------------~v~~vl~~l~~~l~~g~iiId~s~~~ 106 (490)
+.-.+ . .+.++++.+.+.. |..++|..+|..
T Consensus 81 tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~-p~a~~iv~sNP~ 131 (321)
T PTZ00082 81 TAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYC-PNAFVIVITNPL 131 (321)
T ss_pred CCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcH
Confidence 76221 1 1233445555554 555888888743
|
|
| >PRK12549 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.69 E-value=8.7e-05 Score=74.35 Aligned_cols=115 Identities=14% Similarity=0.107 Sum_probs=75.1
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHcccC---CCCeeccCCHHHHHhhCCCCcEEEEecCCCc
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGF-TVVAYNRTTAKVDSFLANEAK---GTNIIGAHSLEELVKNLKKPRRVMMLVKAGS 80 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~g~~---~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~ 80 (490)
++|.|||+|.+|++++..|++.|. +|+++||++++.+.+.+.-.. ...+...+++.+.+ ..+|+||.++|.+-
T Consensus 128 k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~~~~~~~~---~~aDiVInaTp~Gm 204 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFPAARATAGSDLAAAL---AAADGLVHATPTGM 204 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEeccchHhhh---CCCCEEEECCcCCC
Confidence 479999999999999999999997 799999999999988764211 01122223333333 34899999998863
Q ss_pred hHHHHHHhh-cccCCCCCEEEcCCCCChHHHHHHHHHHHHcccccc
Q psy9637 81 AVDDFIDKL-VPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYV 125 (490)
Q Consensus 81 ~v~~vl~~l-~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~l 125 (490)
.-..- ..+ ...+.++.+++|..-.. ..| ...+..+++|...+
T Consensus 205 ~~~~~-~~~~~~~l~~~~~v~DivY~P-~~T-~ll~~A~~~G~~~~ 247 (284)
T PRK12549 205 AKHPG-LPLPAELLRPGLWVADIVYFP-LET-ELLRAARALGCRTL 247 (284)
T ss_pred CCCCC-CCCCHHHcCCCcEEEEeeeCC-CCC-HHHHHHHHCCCeEe
Confidence 21100 001 12367788999997543 333 34455566775443
|
|
| >PRK00048 dihydrodipicolinate reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00022 Score=70.34 Aligned_cols=94 Identities=16% Similarity=0.237 Sum_probs=63.7
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHHC-CCeEE-EEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCc
Q psy9637 4 KGDIGLIGL-AVMGQNLILNMNDH-GFTVV-AYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGS 80 (490)
Q Consensus 4 ~~~IgiIGl-G~MG~~lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~ 80 (490)
++||+|||+ |+||..++..+.+. +++++ ++|+++++.... . ...+..+++++++++. +|+|+.+.|+.
T Consensus 1 ~mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~-~----~~~i~~~~dl~~ll~~---~DvVid~t~p~- 71 (257)
T PRK00048 1 MIKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQ-G----ALGVAITDDLEAVLAD---ADVLIDFTTPE- 71 (257)
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcccccc-C----CCCccccCCHHHhccC---CCEEEECCCHH-
Confidence 369999998 99999999888864 67766 589887765443 1 1123356788887764 89999787764
Q ss_pred hHHHHHHhhcccCCCCCEEEcCCCCChHH
Q psy9637 81 AVDDFIDKLVPLLEKGDIIIDGGNSEYQD 109 (490)
Q Consensus 81 ~v~~vl~~l~~~l~~g~iiId~s~~~~~~ 109 (490)
...+++... ++.|.-++-.+|.....
T Consensus 72 ~~~~~~~~a---l~~G~~vvigttG~s~~ 97 (257)
T PRK00048 72 ATLENLEFA---LEHGKPLVIGTTGFTEE 97 (257)
T ss_pred HHHHHHHHH---HHcCCCEEEECCCCCHH
Confidence 445554433 44666666556554433
|
|
| >COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00025 Score=73.88 Aligned_cols=94 Identities=20% Similarity=0.324 Sum_probs=68.7
Q ss_pred CcEEEEcccHHHHHHHHHHHHCC-CeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchH-
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHG-FTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAV- 82 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G-~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v- 82 (490)
.++.|||+|.||.-.|++|.++| ..|++.||+.++++.+.++-.. -+.++.++...|..+|+||+++.++.++
T Consensus 179 ~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~-----~~~~l~el~~~l~~~DvVissTsa~~~ii 253 (414)
T COG0373 179 KKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGA-----EAVALEELLEALAEADVVISSTSAPHPII 253 (414)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCC-----eeecHHHHHHhhhhCCEEEEecCCCcccc
Confidence 57999999999999999999999 6899999999999998876431 2455666666566699999998665443
Q ss_pred -HHHHHhhcccCCCCCEEEcCCC
Q psy9637 83 -DDFIDKLVPLLEKGDIIIDGGN 104 (490)
Q Consensus 83 -~~vl~~l~~~l~~g~iiId~s~ 104 (490)
..-+...... ++.-++||.+.
T Consensus 254 ~~~~ve~a~~~-r~~~livDiav 275 (414)
T COG0373 254 TREMVERALKI-RKRLLIVDIAV 275 (414)
T ss_pred CHHHHHHHHhc-ccCeEEEEecC
Confidence 2222333221 12258899886
|
|
| >cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0003 Score=66.21 Aligned_cols=99 Identities=15% Similarity=0.118 Sum_probs=68.0
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccC--CCCeec--cCCHHHHHhhCCCCcEEEEecCCC
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAK--GTNIIG--AHSLEELVKNLKKPRRVMMLVKAG 79 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~--~~~i~~--~~s~~e~v~~l~~~dvIil~vp~~ 79 (490)
+++.|+|. |.+|..++..|++.|++|++++|++++.+.+.+.-.. +..+.. ..+.+++.+.+..+|+||.+.|.+
T Consensus 29 ~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~diVi~at~~g 108 (194)
T cd01078 29 KTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVFAAGAAG 108 (194)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCEEEECCCCC
Confidence 58999995 9999999999999999999999999988877653210 111211 244454444445599999999987
Q ss_pred chHHHHHHhhcccCCCCCEEEcCCCCC
Q psy9637 80 SAVDDFIDKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 80 ~~v~~vl~~l~~~l~~g~iiId~s~~~ 106 (490)
..+ .........++.+++|..-..
T Consensus 109 ~~~---~~~~~~~~~~~~vv~D~~~~~ 132 (194)
T cd01078 109 VEL---LEKLAWAPKPLAVAADVNAVP 132 (194)
T ss_pred cee---chhhhcccCceeEEEEccCCC
Confidence 541 111222344578999986543
|
Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo |
| >KOG0068|consensus | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00024 Score=70.88 Aligned_cols=105 Identities=21% Similarity=0.336 Sum_probs=84.3
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
+++||+|+|++|+..|.++..-|-.|+.||.-... +...+.|.+ ..+++|+... +|+|-+-+|-.++++.
T Consensus 147 KTLgvlG~GrIGseVA~r~k~~gm~vI~~dpi~~~-~~~~a~gvq------~vsl~Eil~~---ADFitlH~PLtP~T~~ 216 (406)
T KOG0068|consen 147 KTLGVLGLGRIGSEVAVRAKAMGMHVIGYDPITPM-ALAEAFGVQ------LVSLEEILPK---ADFITLHVPLTPSTEK 216 (406)
T ss_pred cEEEEeecccchHHHHHHHHhcCceEEeecCCCch-HHHHhccce------eeeHHHHHhh---cCEEEEccCCCcchhh
Confidence 57999999999999999999999999999864322 223333432 5688888876 9999999999999998
Q ss_pred HH-HhhcccCCCCCEEEcCCCCChHHHHHHHHHHHH
Q psy9637 85 FI-DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEA 119 (490)
Q Consensus 85 vl-~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~ 119 (490)
++ ++.+..+++|-.||+++.+---|...+.+.+..
T Consensus 217 lin~~tfA~mKkGVriIN~aRGGvVDe~ALv~Al~s 252 (406)
T KOG0068|consen 217 LLNDETFAKMKKGVRIINVARGGVVDEPALVRALDS 252 (406)
T ss_pred ccCHHHHHHhhCCcEEEEecCCceechHHHHHHHhc
Confidence 88 566677899999999998877777777766653
|
|
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00026 Score=74.26 Aligned_cols=88 Identities=15% Similarity=0.154 Sum_probs=69.3
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
.+|+|+|+|.+|..++..+...|.+|+++|+++.+.+.....|.. ..+.++.+.. +|+||.++... .
T Consensus 203 ktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~~------~~~~~e~v~~---aDVVI~atG~~----~ 269 (413)
T cd00401 203 KVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEGYE------VMTMEEAVKE---GDIFVTTTGNK----D 269 (413)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcCCE------EccHHHHHcC---CCEEEECCCCH----H
Confidence 579999999999999999999999999999999988877766542 2345666654 89999887543 3
Q ss_pred HHH-hhcccCCCCCEEEcCCCC
Q psy9637 85 FID-KLVPLLEKGDIIIDGGNS 105 (490)
Q Consensus 85 vl~-~l~~~l~~g~iiId~s~~ 105 (490)
++. .....+++|.++++.|..
T Consensus 270 ~i~~~~l~~mk~GgilvnvG~~ 291 (413)
T cd00401 270 IITGEHFEQMKDGAIVCNIGHF 291 (413)
T ss_pred HHHHHHHhcCCCCcEEEEeCCC
Confidence 343 346778899999999853
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0005 Score=71.79 Aligned_cols=122 Identities=17% Similarity=0.228 Sum_probs=76.3
Q ss_pred EEEEcccHHHHHHHHHHHHCC-C-eEEEEeCChHHHHHHHHcccCCCCee----ccCCHHHHHhhCCCCcEEEEecCCCc
Q psy9637 7 IGLIGLAVMGQNLILNMNDHG-F-TVVAYNRTTAKVDSFLANEAKGTNII----GAHSLEELVKNLKKPRRVMMLVKAGS 80 (490)
Q Consensus 7 IgiIGlG~MG~~lA~~L~~~G-~-~V~v~dr~~~~~~~l~~~g~~~~~i~----~~~s~~e~v~~l~~~dvIil~vp~~~ 80 (490)
|.|+|.|.+|..++..|++.+ + +|++.||+.++++++.+.-. ..++. -..+.+++.+-++.+|+||.|+|..
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp~- 78 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLL-GDRVEAVQVDVNDPESLAELLRGCDVVINCAGPF- 78 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--T-TTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSGG-
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhcc-ccceeEEEEecCCHHHHHHHHhcCCEEEECCccc-
Confidence 789999999999999999987 4 89999999999998876311 11111 1345555555455699999999874
Q ss_pred hHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccc-cccCCCCCcc
Q psy9637 81 AVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLY-VGCGVSGGED 134 (490)
Q Consensus 81 ~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~-ld~~vsGg~~ 134 (490)
....+++..+ +.|.-+||.+. ......+..+..+++|+.+ .+++...|..
T Consensus 79 ~~~~v~~~~i---~~g~~yvD~~~-~~~~~~~l~~~a~~~g~~~l~~~G~~PGl~ 129 (386)
T PF03435_consen 79 FGEPVARACI---EAGVHYVDTSY-VTEEMLALDEEAKEAGVTALPGCGFDPGLS 129 (386)
T ss_dssp GHHHHHHHHH---HHT-EEEESS--HHHHHHHCHHHHHHTTSEEE-S-BTTTBHH
T ss_pred hhHHHHHHHH---HhCCCeeccch-hHHHHHHHHHHHHhhCCEEEeCcccccchH
Confidence 4555555443 46788999332 1334444446666777764 4566655554
|
Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A. |
| >cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00024 Score=71.73 Aligned_cols=94 Identities=16% Similarity=0.210 Sum_probs=61.8
Q ss_pred EEEEcccHHHHHHHHHHHHCCC-eEEEEeCChHHHHHH----HHccc---CCCCeeccCCHHHHHhhCCCCcEEEEecCC
Q psy9637 7 IGLIGLAVMGQNLILNMNDHGF-TVVAYNRTTAKVDSF----LANEA---KGTNIIGAHSLEELVKNLKKPRRVMMLVKA 78 (490)
Q Consensus 7 IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l----~~~g~---~~~~i~~~~s~~e~v~~l~~~dvIil~vp~ 78 (490)
|+|||+|.||..+|..|+.+|+ +|+++|+++++.+.. ..... ...++....+.++ ++ .+|+||+++..
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d~~~-l~---dADiVIit~g~ 76 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTNDYED-IA---GSDVVVITAGI 76 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCCHHH-hC---CCCEEEEecCC
Confidence 6899999999999999998887 999999998764321 11110 1124444455544 33 49999998843
Q ss_pred Cc---------------hHHHHHHhhcccCCCCCEEEcCCCC
Q psy9637 79 GS---------------AVDDFIDKLVPLLEKGDIIIDGGNS 105 (490)
Q Consensus 79 ~~---------------~v~~vl~~l~~~l~~g~iiId~s~~ 105 (490)
+. .+++++..+.+.. ++.++|..+|.
T Consensus 77 p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~-p~~~iIv~sNP 117 (300)
T cd01339 77 PRKPGMSRDDLLGTNAKIVKEVAENIKKYA-PNAIVIVVTNP 117 (300)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCc
Confidence 21 1334556666655 56677777764
|
Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas |
| >PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline [] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0002 Score=72.76 Aligned_cols=97 Identities=20% Similarity=0.286 Sum_probs=64.0
Q ss_pred CcEEEEcccHHHHHHHHHHHH-C-CCeEEEEeCChHHHHHHHHcccC-CCCeeccCCHHHHHhhCCCCcEEEEecCCCch
Q psy9637 5 GDIGLIGLAVMGQNLILNMND-H-GFTVVAYNRTTAKVDSFLANEAK-GTNIIGAHSLEELVKNLKKPRRVMMLVKAGSA 81 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~-~-G~~V~v~dr~~~~~~~l~~~g~~-~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~ 81 (490)
.+++|||+|..+...+..+.. . --+|.+|||++++.++|.+.-.. +..+..++|+++++.. +|+|++|+|+...
T Consensus 129 ~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~v~~~~~~~~av~~---aDii~taT~s~~~ 205 (313)
T PF02423_consen 129 RTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRDLGVPVVAVDSAEEAVRG---ADIIVTATPSTTP 205 (313)
T ss_dssp -EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHCCCTCEEEESSHHHHHTT---SSEEEE----SSE
T ss_pred ceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhccccccceeccchhhhccc---CCEEEEccCCCCC
Confidence 579999999999998887764 2 24799999999999998875433 4467789999999988 9999999999751
Q ss_pred HHHHHHhhcccCCCCCEEEcCCCCCh
Q psy9637 82 VDDFIDKLVPLLEKGDIIIDGGNSEY 107 (490)
Q Consensus 82 v~~vl~~l~~~l~~g~iiId~s~~~~ 107 (490)
. .+++ ...+++|..|+-.|...|
T Consensus 206 ~-P~~~--~~~l~~g~hi~~iGs~~~ 228 (313)
T PF02423_consen 206 A-PVFD--AEWLKPGTHINAIGSYTP 228 (313)
T ss_dssp E-ESB---GGGS-TT-EEEE-S-SST
T ss_pred C-cccc--HHHcCCCcEEEEecCCCC
Confidence 0 1222 135789999999887654
|
The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A. |
| >COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00029 Score=71.65 Aligned_cols=115 Identities=17% Similarity=0.206 Sum_probs=83.2
Q ss_pred CcEEEEcccHHHHHHHHHHHH--CCCeEEEEeCChHHHHHHHHcccC--CCCeeccCCHHHHHhhCCCCcEEEEecCCCc
Q psy9637 5 GDIGLIGLAVMGQNLILNMND--HGFTVVAYNRTTAKVDSFLANEAK--GTNIIGAHSLEELVKNLKKPRRVMMLVKAGS 80 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~--~G~~V~v~dr~~~~~~~l~~~g~~--~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~ 80 (490)
..++|||+|.++......+.. ..-+|.+|+|+++..+++...-.. +..+..++|.+++++. +|+|+.++|+.+
T Consensus 131 ~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~~~~v~a~~s~~~av~~---aDiIvt~T~s~~ 207 (330)
T COG2423 131 STLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRGGEAVGAADSAEEAVEG---ADIVVTATPSTE 207 (330)
T ss_pred cEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhcCccceeccCHHHHhhc---CCEEEEecCCCC
Confidence 569999999999998888775 345899999999999988754221 2235678999999988 999999999975
Q ss_pred hHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHH-HHHHHccccccccC
Q psy9637 81 AVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRS-KALEAKGLLYVGCG 128 (490)
Q Consensus 81 ~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~-~~l~~~gi~~ld~~ 128 (490)
+ ++. ...|++|..|.-.|.-.|. ..+.. +.+...+..|+|.+
T Consensus 208 P---il~--~~~l~~G~hI~aiGad~p~-k~Eld~e~l~ra~~vvvD~~ 250 (330)
T COG2423 208 P---VLK--AEWLKPGTHINAIGADAPG-KRELDPEVLARADRVVVDSL 250 (330)
T ss_pred C---eec--HhhcCCCcEEEecCCCCcc-cccCCHHHHHhcCeEEEcCH
Confidence 3 221 1357799998888875443 33343 44444446677765
|
|
| >cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00042 Score=70.19 Aligned_cols=95 Identities=15% Similarity=0.204 Sum_probs=64.2
Q ss_pred CcEEEEcccHHHHHHHHHHHHCC--CeEEEEeCChHHHHHHHHcccC-----CCCe-eccCCHHHHHhhCCCCcEEEEec
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHG--FTVVAYNRTTAKVDSFLANEAK-----GTNI-IGAHSLEELVKNLKKPRRVMMLV 76 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G--~~V~v~dr~~~~~~~l~~~g~~-----~~~i-~~~~s~~e~v~~l~~~dvIil~v 76 (490)
+||+|||+|.+|..+|..|+..| ++|+++|+++++++.+...-.. .... ....+.++ +. .+|+||++.
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~~-l~---~aDIVIita 76 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYSD-CK---DADIVVITA 76 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCHHH-hC---CCCEEEEcc
Confidence 37999999999999999999999 6899999999987765542100 1111 12344444 33 499999998
Q ss_pred CCCc---------------hHHHHHHhhcccCCCCCEEEcCCC
Q psy9637 77 KAGS---------------AVDDFIDKLVPLLEKGDIIIDGGN 104 (490)
Q Consensus 77 p~~~---------------~v~~vl~~l~~~l~~g~iiId~s~ 104 (490)
..+. .++++.+.+.++- +..+||..||
T Consensus 77 g~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~-~~~~vivvsN 118 (306)
T cd05291 77 GAPQKPGETRLDLLEKNAKIMKSIVPKIKASG-FDGIFLVASN 118 (306)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEecC
Confidence 6532 1334445555543 5667888876
|
L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine |
| >PRK06046 alanine dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00028 Score=72.08 Aligned_cols=94 Identities=18% Similarity=0.305 Sum_probs=70.1
Q ss_pred CcEEEEcccHHHHHHHHHHHHC-C-CeEEEEeCChHHHHHHHHcccC--CCCeeccCCHHHHHhhCCCCcEEEEecCCCc
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDH-G-FTVVAYNRTTAKVDSFLANEAK--GTNIIGAHSLEELVKNLKKPRRVMMLVKAGS 80 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~-G-~~V~v~dr~~~~~~~l~~~g~~--~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~ 80 (490)
.+|||||+|.+|...+..|... + ..|.+|||++++.+++.+.... +.++..+++++++++ +|+|++|+|+..
T Consensus 130 ~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~----aDiVv~aTps~~ 205 (326)
T PRK06046 130 KVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAEDIEEACD----CDILVTTTPSRK 205 (326)
T ss_pred CEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhh----CCEEEEecCCCC
Confidence 5799999999999999998743 3 3688999999999988764321 122445778888874 799999999865
Q ss_pred hHHHHHHhhcccCCCCCEEEcCCCCCh
Q psy9637 81 AVDDFIDKLVPLLEKGDIIIDGGNSEY 107 (490)
Q Consensus 81 ~v~~vl~~l~~~l~~g~iiId~s~~~~ 107 (490)
++ ++ ...+++|..|...|+..|
T Consensus 206 P~---~~--~~~l~~g~hV~~iGs~~p 227 (326)
T PRK06046 206 PV---VK--AEWIKEGTHINAIGADAP 227 (326)
T ss_pred cE---ec--HHHcCCCCEEEecCCCCC
Confidence 43 21 124678999988887654
|
|
| >TIGR01761 thiaz-red thiazolinyl imide reductase | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00096 Score=68.50 Aligned_cols=112 Identities=13% Similarity=0.174 Sum_probs=76.2
Q ss_pred CCCcEEEEcccHHHHHHHHHHHHC--CCeEE-EEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCC
Q psy9637 3 AKGDIGLIGLAVMGQNLILNMNDH--GFTVV-AYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAG 79 (490)
Q Consensus 3 ~~~~IgiIGlG~MG~~lA~~L~~~--G~~V~-v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~ 79 (490)
+..||||||+ .||...+..+.+. +++++ ++|+++++.+++.++.. +..++++++++++ .|++++++|+.
T Consensus 2 ~~~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~g----i~~y~~~eell~d---~Di~~V~ipt~ 73 (343)
T TIGR01761 2 DVQSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSERSRALAHRLG----VPLYCEVEELPDD---IDIACVVVRSA 73 (343)
T ss_pred CCcEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHhC----CCccCCHHHHhcC---CCEEEEEeCCC
Confidence 3468999999 6899999999875 46655 68999999999887543 2357999999876 78888887642
Q ss_pred ---chHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccccc
Q psy9637 80 ---SAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYV 125 (490)
Q Consensus 80 ---~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~l 125 (490)
..-.++... .|+.|.-|+--=-....+.+++.+.++++|+.+.
T Consensus 74 ~P~~~H~e~a~~---aL~aGkHVL~EKPla~~Ea~el~~~A~~~g~~l~ 119 (343)
T TIGR01761 74 IVGGQGSALARA---LLARGIHVLQEHPLHPRDIQDLLRLAERQGRRYL 119 (343)
T ss_pred CCCccHHHHHHH---HHhCCCeEEEcCCCCHHHHHHHHHHHHHcCCEEE
Confidence 122233322 3445654443222235677777777777887654
|
This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG). |
| >cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00042 Score=63.86 Aligned_cols=73 Identities=22% Similarity=0.322 Sum_probs=56.2
Q ss_pred CcEEEEcccHH-HHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 5 GDIGLIGLAVM-GQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 5 ~~IgiIGlG~M-G~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
.+|.|||.|.| |..++.+|.++|.+|++.+|+.+ ++.+.+.+ +|+||.+++.+..+
T Consensus 45 k~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~~-------------------~l~~~l~~---aDiVIsat~~~~ii- 101 (168)
T cd01080 45 KKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKTK-------------------NLKEHTKQ---ADIVIVAVGKPGLV- 101 (168)
T ss_pred CEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCch-------------------hHHHHHhh---CCEEEEcCCCCcee-
Confidence 68999999997 88899999999999999998732 33344555 89999999986321
Q ss_pred HHHHhhcccCCCCCEEEcCCCC
Q psy9637 84 DFIDKLVPLLEKGDIIIDGGNS 105 (490)
Q Consensus 84 ~vl~~l~~~l~~g~iiId~s~~ 105 (490)
-.+ .++++.+|||.+..
T Consensus 102 --~~~---~~~~~~viIDla~p 118 (168)
T cd01080 102 --KGD---MVKPGAVVIDVGIN 118 (168)
T ss_pred --cHH---HccCCeEEEEccCC
Confidence 122 34668999999864
|
NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a |
| >PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis [] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00051 Score=61.48 Aligned_cols=95 Identities=18% Similarity=0.238 Sum_probs=60.2
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCC--eEEEEeCChHHHHHHHHcccC-----CCCeec-cCCHHHHHhhCCCCcEEEEe
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDHGF--TVVAYNRTTAKVDSFLANEAK-----GTNIIG-AHSLEELVKNLKKPRRVMML 75 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~g~~-----~~~i~~-~~s~~e~v~~l~~~dvIil~ 75 (490)
|||+|||+ |.+|..+|..|...+. ++.++|+++++++.....-.. ..+... ..+.+++ + ++|+|+++
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~-~---~aDivvit 76 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEAL-K---DADIVVIT 76 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGG-T---TESEEEET
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhccccccccccccccc-c---cccEEEEe
Confidence 58999999 9999999999998875 799999998876654321100 111112 2333333 3 38999988
Q ss_pred cCCC----c-----------hHHHHHHhhcccCCCCCEEEcCCC
Q psy9637 76 VKAG----S-----------AVDDFIDKLVPLLEKGDIIIDGGN 104 (490)
Q Consensus 76 vp~~----~-----------~v~~vl~~l~~~l~~g~iiId~s~ 104 (490)
.-.. . .++++...+.++- +..+++-.+|
T Consensus 77 ag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~-p~~~vivvtN 119 (141)
T PF00056_consen 77 AGVPRKPGMSRLDLLEANAKIVKEIAKKIAKYA-PDAIVIVVTN 119 (141)
T ss_dssp TSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHHS-TTSEEEE-SS
T ss_pred ccccccccccHHHHHHHhHhHHHHHHHHHHHhC-CccEEEEeCC
Confidence 7332 1 1233334555554 6667777776
|
L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C .... |
| >TIGR00036 dapB dihydrodipicolinate reductase | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0012 Score=65.44 Aligned_cols=112 Identities=17% Similarity=0.225 Sum_probs=65.9
Q ss_pred CcEEEEc-ccHHHHHHHHHHHH-CCCeEE-EEeCC-hHHHH-HHHHc-ccCCCCeeccCCHHHHHhhCCCCcEEEEecCC
Q psy9637 5 GDIGLIG-LAVMGQNLILNMND-HGFTVV-AYNRT-TAKVD-SFLAN-EAKGTNIIGAHSLEELVKNLKKPRRVMMLVKA 78 (490)
Q Consensus 5 ~~IgiIG-lG~MG~~lA~~L~~-~G~~V~-v~dr~-~~~~~-~l~~~-g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~ 78 (490)
+||+|+| +|+||..+++.+.+ .+++++ ++||+ +++.. .+.+. +.....+..+++++++.. .+|+||.+.|+
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~~~d~~~l~~---~~DvVIdfT~p 78 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPVTDDLEAVET---DPDVLIDFTTP 78 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcCcCCceeeCCHHHhcC---CCCEEEECCCh
Confidence 6999999 69999999999986 577766 57854 33211 11111 110112445688888732 38999999977
Q ss_pred CchHHHHHHhhcccCCCCCEEEcCCCCChHHHH-HHHHHHHHcccc
Q psy9637 79 GSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTD-RRSKALEAKGLL 123 (490)
Q Consensus 79 ~~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~-~~~~~l~~~gi~ 123 (490)
. .+.+.+... +..|.-+|.+++....... ++.+..++.|+.
T Consensus 79 ~-~~~~~~~~a---l~~g~~vVigttg~~~e~~~~l~~aA~~~g~~ 120 (266)
T TIGR00036 79 E-GVLNHLKFA---LEHGVRLVVGTTGFSEEDKQELADLAEKAGIA 120 (266)
T ss_pred H-HHHHHHHHH---HHCCCCEEEECCCCCHHHHHHHHHHHhcCCcc
Confidence 4 555554443 4466666665555433333 333433444443
|
|
| >PTZ00117 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00086 Score=68.35 Aligned_cols=97 Identities=16% Similarity=0.253 Sum_probs=65.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCC-CeEEEEeCChHHHHHHHH---cccC----CCCeeccCCHHHHHhhCCCCcEEEEe
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHG-FTVVAYNRTTAKVDSFLA---NEAK----GTNIIGAHSLEELVKNLKKPRRVMML 75 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G-~~V~v~dr~~~~~~~l~~---~g~~----~~~i~~~~s~~e~v~~l~~~dvIil~ 75 (490)
.+||+|||+|.||..++..++..| .+|.++|+++++.+...- .... ..++....+++++ +. +|+|+++
T Consensus 5 ~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~~l-~~---ADiVVit 80 (319)
T PTZ00117 5 RKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYEDI-KD---SDVVVIT 80 (319)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHHHh-CC---CCEEEEC
Confidence 469999999999999999999999 689999999865442111 1110 1234444666643 44 8999999
Q ss_pred c--CCC-------------chHHHHHHhhcccCCCCCEEEcCCCC
Q psy9637 76 V--KAG-------------SAVDDFIDKLVPLLEKGDIIIDGGNS 105 (490)
Q Consensus 76 v--p~~-------------~~v~~vl~~l~~~l~~g~iiId~s~~ 105 (490)
. |.. ..++++.+.+.++ .|..++|..+|.
T Consensus 81 ag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~-~p~a~vivvsNP 124 (319)
T PTZ00117 81 AGVQRKEEMTREDLLTINGKIMKSVAESVKKY-CPNAFVICVTNP 124 (319)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEecCh
Confidence 9 332 1244555666665 466777777774
|
|
| >PRK07589 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00046 Score=70.90 Aligned_cols=116 Identities=16% Similarity=0.175 Sum_probs=78.1
Q ss_pred CcEEEEcccHHHHHHHHHHHH--CCCeEEEEeCChHHHHHHHHcccC-CCCeeccCCHHHHHhhCCCCcEEEEecCCCch
Q psy9637 5 GDIGLIGLAVMGQNLILNMND--HGFTVVAYNRTTAKVDSFLANEAK-GTNIIGAHSLEELVKNLKKPRRVMMLVKAGSA 81 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~--~G~~V~v~dr~~~~~~~l~~~g~~-~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~ 81 (490)
.+++|||+|..+....+.+.. .-.+|.+|||++++.+.|.+.-.. +.++..++++++++.. +|+|++++|+..
T Consensus 130 ~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~---ADIIvtaT~S~~- 205 (346)
T PRK07589 130 RTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGPGLRIVACRSVAEAVEG---ADIITTVTADKT- 205 (346)
T ss_pred cEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCHHHHHhc---CCEEEEecCCCC-
Confidence 579999999999888766653 335899999999999988764321 2345668999999988 999999998643
Q ss_pred HHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccccccc
Q psy9637 82 VDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGC 127 (490)
Q Consensus 82 v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~ 127 (490)
...+++. ..+++|..|.-.|+..| +.++.-..+-.+.-.|+|.
T Consensus 206 ~~Pvl~~--~~lkpG~hV~aIGs~~p-~~~Eld~~~l~~a~v~vD~ 248 (346)
T PRK07589 206 NATILTD--DMVEPGMHINAVGGDCP-GKTELHPDILRRARVFVEY 248 (346)
T ss_pred CCceecH--HHcCCCcEEEecCCCCC-CcccCCHHHHhcCEEEECC
Confidence 1122321 35688998888877554 2333332222222245664
|
|
| >PRK13940 glutamyl-tRNA reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00044 Score=72.82 Aligned_cols=92 Identities=22% Similarity=0.229 Sum_probs=64.3
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGF-TVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
++|.|||.|.||..++.+|.+.|. +++++||++++.+.+.+.... ..+ ..++++.+.+..+|+||.|++.+..+-
T Consensus 182 kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~-~~~---~~~~~l~~~l~~aDiVI~aT~a~~~vi 257 (414)
T PRK13940 182 KNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRN-ASA---HYLSELPQLIKKADIIIAAVNVLEYIV 257 (414)
T ss_pred CEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcC-CeE---ecHHHHHHHhccCCEEEECcCCCCeeE
Confidence 589999999999999999999995 799999999999988875321 112 233344333445999999998875542
Q ss_pred HHHHhhcccCCCCCEEEcCCC
Q psy9637 84 DFIDKLVPLLEKGDIIIDGGN 104 (490)
Q Consensus 84 ~vl~~l~~~l~~g~iiId~s~ 104 (490)
. .+... .+..++||.+.
T Consensus 258 ~--~~~~~--~~~~~~iDLav 274 (414)
T PRK13940 258 T--CKYVG--DKPRVFIDISI 274 (414)
T ss_pred C--HHHhC--CCCeEEEEeCC
Confidence 1 11111 23457788864
|
|
| >PRK08300 acetaldehyde dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0015 Score=65.49 Aligned_cols=98 Identities=18% Similarity=0.153 Sum_probs=67.1
Q ss_pred CCCCCcEEEEcccHHHHHHHHHHHHC-CCeEE-EEeCChHHHH-HHH-HcccCCCCeeccCCHHHHHhh--CCCCcEEEE
Q psy9637 1 MAAKGDIGLIGLAVMGQNLILNMNDH-GFTVV-AYNRTTAKVD-SFL-ANEAKGTNIIGAHSLEELVKN--LKKPRRVMM 74 (490)
Q Consensus 1 M~~~~~IgiIGlG~MG~~lA~~L~~~-G~~V~-v~dr~~~~~~-~l~-~~g~~~~~i~~~~s~~e~v~~--l~~~dvIil 74 (490)
|..+.||||||+|.+|..+...+.+. +.++. ++|+++++.. ++. +.|.. ..+++.+++++. +++.|+||.
T Consensus 1 ~m~klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~~Gi~----~~~~~ie~LL~~~~~~dIDiVf~ 76 (302)
T PRK08300 1 MMSKLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARRLGVA----TSAEGIDGLLAMPEFDDIDIVFD 76 (302)
T ss_pred CCCCCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHHcCCC----cccCCHHHHHhCcCCCCCCEEEE
Confidence 44567999999999999988888764 55655 6789876432 222 22321 124788988864 356899999
Q ss_pred ecCCCchHHHHHHhhcccCCCCCEEEcCCCCC
Q psy9637 75 LVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 75 ~vp~~~~v~~vl~~l~~~l~~g~iiId~s~~~ 106 (490)
++|+. ...+....+ ++.|..|||.+...
T Consensus 77 AT~a~-~H~e~a~~a---~eaGk~VID~sPA~ 104 (302)
T PRK08300 77 ATSAG-AHVRHAAKL---REAGIRAIDLTPAA 104 (302)
T ss_pred CCCHH-HHHHHHHHH---HHcCCeEEECCccc
Confidence 99885 444444433 45799999988643
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0011 Score=58.42 Aligned_cols=98 Identities=15% Similarity=0.102 Sum_probs=71.4
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
++|..||+| -|..+|..|.+.|++|++.|.+++.++...+.+.....--.++..-++..+ +|+|..+=|+. .+..
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~---a~liysirpp~-el~~ 92 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKN---AKLIYSIRPPR-DLQP 92 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhc---CCEEEEeCCCH-HHHH
Confidence 579999999 899999999999999999999999998877654321000123334455565 89999998886 4555
Q ss_pred HHHhhcccCCCCCEEEcCCCCCh
Q psy9637 85 FIDKLVPLLEKGDIIIDGGNSEY 107 (490)
Q Consensus 85 vl~~l~~~l~~g~iiId~s~~~~ 107 (490)
-+-.+...+..+-+|...|+-.|
T Consensus 93 ~~~~la~~~~~~~~i~~l~~e~~ 115 (134)
T PRK04148 93 FILELAKKINVPLIIKPLSGEEP 115 (134)
T ss_pred HHHHHHHHcCCCEEEEcCCCCCC
Confidence 55567766766667777777543
|
|
| >KOG0409|consensus | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00057 Score=67.47 Aligned_cols=107 Identities=21% Similarity=0.170 Sum_probs=73.7
Q ss_pred ceeecCCCCcchhHHhhhhHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhccCcchhHHHHHH-HHHhcccCCCCCc
Q psy9637 349 CDWVGEQGAGHFVKMVHNGIEYGDMQLICEAYHLMTGALGMSHDEMSAVFEDWNKGELDSFLIEIT-KDILKFKDTDGAP 427 (490)
Q Consensus 349 ~~~~g~~g~gh~vkmvhngiey~~m~~~~E~~~~~~~~~~~~~~~~~~~~~~w~~g~~~s~l~~~~-~~~~~~~~~~~~~ 427 (490)
+.|+|..|.|..+|++.|-+-..+|-.++|+..|..+ +|++...+ ++.-|.|..-|+-++.= -.+++ .|-++..
T Consensus 193 ~~~~G~~GnG~~~Kl~nnm~~g~~M~g~aEal~la~r-~GLd~~~l---~eiln~G~~~S~~~~~~~p~m~k-~dy~p~f 267 (327)
T KOG0409|consen 193 VVFLGGVGNGQAAKLCNNMLLGSSMVGLAEALALADR-LGLDAKKL---LEILNTGRCWSSMFYNPVPGMLK-GDYNPGF 267 (327)
T ss_pred EEEecccCchHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHH---HHHHhcCCcccHHHhCcCchhhc-CCCCCcc
Confidence 5689999999999999999999999999999999987 89965554 44455566444443321 12222 1211212
Q ss_pred chhhhccccCCCcchHHHHHHHHhcCCCchhhHHHHHHH
Q psy9637 428 LVEKIKDYAGQKGTGKWTAISALDYGVPVTLIGESVFSR 466 (490)
Q Consensus 428 ~l~~i~~~~~~~g~g~w~~~~a~~~~~p~~~i~~a~~~r 466 (490)
-++-+.. .-+-...+|.+.++|+|+.+.|....
T Consensus 268 ~~~~m~K------DLgla~~~a~~~~~~~P~~slA~qly 300 (327)
T KOG0409|consen 268 ALKLMVK------DLGLALNAAESVKVPMPLGSLAHQLY 300 (327)
T ss_pred hHHHHHH------HHHHHHHhhhccCCCCchHHHHHHHH
Confidence 2222222 23467788999999999999987653
|
|
| >PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0016 Score=71.99 Aligned_cols=112 Identities=12% Similarity=0.154 Sum_probs=74.6
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHh--hCCCCcEEEEecCCCchH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVK--NLKKPRRVMMLVKAGSAV 82 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~--~l~~~dvIil~vp~~~~v 82 (490)
++|-|+|.|++|..+++.|.++|+++++.|.|+++++.+.+.+.. -+..-.+-.++.+ .++++|.+++++++++..
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~--v~~GDat~~~~L~~agi~~A~~vv~~~~d~~~n 478 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYK--VYYGDATQLELLRAAGAEKAEAIVITCNEPEDT 478 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCe--EEEeeCCCHHHHHhcCCccCCEEEEEeCCHHHH
Confidence 579999999999999999999999999999999999998876532 1122223333333 356799999999997555
Q ss_pred HHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccc
Q psy9637 83 DDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLY 124 (490)
Q Consensus 83 ~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ 124 (490)
..++..+...-+.-.+++-..+ ....+.+.+.|+..
T Consensus 479 ~~i~~~~r~~~p~~~IiaRa~~------~~~~~~L~~~Ga~~ 514 (601)
T PRK03659 479 MKIVELCQQHFPHLHILARARG------RVEAHELLQAGVTQ 514 (601)
T ss_pred HHHHHHHHHHCCCCeEEEEeCC------HHHHHHHHhCCCCE
Confidence 5555444443333345543322 22334555556543
|
|
| >cd05293 LDH_1 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0012 Score=67.10 Aligned_cols=96 Identities=17% Similarity=0.275 Sum_probs=64.0
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCC--eEEEEeCChHHHHHHHHc---cc---CCCCeeccCCHHHHHhhCCCCcEEEEe
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGF--TVVAYNRTTAKVDSFLAN---EA---KGTNIIGAHSLEELVKNLKKPRRVMML 75 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~---g~---~~~~i~~~~s~~e~v~~l~~~dvIil~ 75 (490)
.+||+|||+|.+|..+|..|+..|. ++.++|+++++++..... .. ...++....+++++ ++ +|+||++
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~~~-~~---adivvit 78 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYSVT-AN---SKVVIVT 78 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHHHh-CC---CCEEEEC
Confidence 4699999999999999999998875 799999988765543221 11 01244445677763 33 8999996
Q ss_pred cCCC----ch-----------HHHHHHhhcccCCCCCEEEcCCC
Q psy9637 76 VKAG----SA-----------VDDFIDKLVPLLEKGDIIIDGGN 104 (490)
Q Consensus 76 vp~~----~~-----------v~~vl~~l~~~l~~g~iiId~s~ 104 (490)
.-.. .. ++++.+.+..+ .+..++|..+|
T Consensus 79 aG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~-~p~~~vivvsN 121 (312)
T cd05293 79 AGARQNEGESRLDLVQRNVDIFKGIIPKLVKY-SPNAILLVVSN 121 (312)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEccC
Confidence 6331 11 23333455555 56778888886
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK10669 putative cation:proton antiport protein; Provisional | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0019 Score=70.83 Aligned_cols=115 Identities=17% Similarity=0.272 Sum_probs=73.9
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHh--hCCCCcEEEEecCCCchH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVK--NLKKPRRVMMLVKAGSAV 82 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~--~l~~~dvIil~vp~~~~v 82 (490)
.+|-|+|+|++|..+++.|.++|++|++.|.|+++++.+.+.+.. -+..-.+-.+..+ .++++|.++++++++...
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~~--~i~GD~~~~~~L~~a~i~~a~~viv~~~~~~~~ 495 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRERGIR--AVLGNAANEEIMQLAHLDCARWLLLTIPNGYEA 495 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCe--EEEcCCCCHHHHHhcCccccCEEEEEcCChHHH
Confidence 468899999999999999999999999999999999999876532 1112222233332 356799999999987544
Q ss_pred HHHHHhhcccCCCC-CEEEcCCCCChHHHHHHHHHHHHccccccccC
Q psy9637 83 DDFIDKLVPLLEKG-DIIIDGGNSEYQDTDRRSKALEAKGLLYVGCG 128 (490)
Q Consensus 83 ~~vl~~l~~~l~~g-~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~ 128 (490)
..++..+... .++ .++.-. + .+ +..+.+++.|+.++=.|
T Consensus 496 ~~iv~~~~~~-~~~~~iiar~-~-~~----~~~~~l~~~Gad~vv~p 535 (558)
T PRK10669 496 GEIVASAREK-RPDIEIIARA-H-YD----DEVAYITERGANQVVMG 535 (558)
T ss_pred HHHHHHHHHH-CCCCeEEEEE-C-CH----HHHHHHHHcCCCEEECh
Confidence 4444444333 333 344332 2 11 23344455666554433
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0016 Score=69.35 Aligned_cols=97 Identities=12% Similarity=0.185 Sum_probs=65.5
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH-cccCCCCeec-cCCHHHHHhh-CCCCcEEEEecCCCch
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLA-NEAKGTNIIG-AHSLEELVKN-LKKPRRVMMLVKAGSA 81 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~-~g~~~~~i~~-~~s~~e~v~~-l~~~dvIil~vp~~~~ 81 (490)
|+|.|+|+|.+|..++..|.+.|++|+++|+++++++.+.+ .+.. -+.. ..+...+.+. ++.+|.|+++++++ .
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~~~--~~~gd~~~~~~l~~~~~~~a~~vi~~~~~~-~ 77 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRLDVR--TVVGNGSSPDVLREAGAEDADLLIAVTDSD-E 77 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcCEE--EEEeCCCCHHHHHHcCCCcCCEEEEecCCh-H
Confidence 47999999999999999999999999999999999988765 2211 0111 2333333332 56799999999885 4
Q ss_pred HHHHHHhhcccC-CCCCEEEcCCC
Q psy9637 82 VDDFIDKLVPLL-EKGDIIIDGGN 104 (490)
Q Consensus 82 v~~vl~~l~~~l-~~g~iiId~s~ 104 (490)
....+......+ +...+|+...+
T Consensus 78 ~n~~~~~~~r~~~~~~~ii~~~~~ 101 (453)
T PRK09496 78 TNMVACQIAKSLFGAPTTIARVRN 101 (453)
T ss_pred HHHHHHHHHHHhcCCCeEEEEECC
Confidence 444443333333 44456665433
|
|
| >PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00045 Score=60.05 Aligned_cols=93 Identities=19% Similarity=0.280 Sum_probs=59.3
Q ss_pred cEEEEc-ccHHHHHHHHHHHHCC-Ce-EEEEeCChHHHHHHHHcccC---CCCeeccC-CHHHHHhhCCCCcEEEEecCC
Q psy9637 6 DIGLIG-LAVMGQNLILNMNDHG-FT-VVAYNRTTAKVDSFLANEAK---GTNIIGAH-SLEELVKNLKKPRRVMMLVKA 78 (490)
Q Consensus 6 ~IgiIG-lG~MG~~lA~~L~~~G-~~-V~v~dr~~~~~~~l~~~g~~---~~~i~~~~-s~~e~v~~l~~~dvIil~vp~ 78 (490)
||+||| .|.+|..+.+.|.++- ++ +.++.++.+.-+.+...... ...+...+ +.+++ .. +|+||+|+|+
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~Dvvf~a~~~ 76 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEEL-SD---VDVVFLALPH 76 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHH-TT---ESEEEE-SCH
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHh-hc---CCEEEecCch
Confidence 699999 9999999999999853 24 44667765333333322110 01122222 34444 44 8999999998
Q ss_pred CchHHHHHHhhcccCCCCCEEEcCCCCC
Q psy9637 79 GSAVDDFIDKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 79 ~~~v~~vl~~l~~~l~~g~iiId~s~~~ 106 (490)
+ ...+....+ +++|..|||.|+.+
T Consensus 77 ~-~~~~~~~~~---~~~g~~ViD~s~~~ 100 (121)
T PF01118_consen 77 G-ASKELAPKL---LKAGIKVIDLSGDF 100 (121)
T ss_dssp H-HHHHHHHHH---HHTTSEEEESSSTT
T ss_pred h-HHHHHHHHH---hhCCcEEEeCCHHH
Confidence 5 566666655 45788999999865
|
This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C .... |
| >KOG2741|consensus | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0031 Score=63.63 Aligned_cols=118 Identities=14% Similarity=0.250 Sum_probs=85.7
Q ss_pred CCcEEEEcccHHHHHHHHHHH---HCCCeEE-EEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCC
Q psy9637 4 KGDIGLIGLAVMGQNLILNMN---DHGFTVV-AYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAG 79 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~---~~G~~V~-v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~ 79 (490)
..|+||+|+|.|+.-.++.|. +.+|.|+ ++||+.+++..|++...-. +.+.+.|.++++++ +..|+|.+..|.+
T Consensus 6 ~ir~Gi~g~g~ia~~f~~al~~~p~s~~~Ivava~~s~~~A~~fAq~~~~~-~~k~y~syEeLakd-~~vDvVyi~~~~~ 83 (351)
T KOG2741|consen 6 TIRWGIVGAGRIARDFVRALHTLPESNHQIVAVADPSLERAKEFAQRHNIP-NPKAYGSYEELAKD-PEVDVVYISTPNP 83 (351)
T ss_pred eeEEEEeehhHHHHHHHHHhccCcccCcEEEEEecccHHHHHHHHHhcCCC-CCccccCHHHHhcC-CCcCEEEeCCCCc
Confidence 358999999999999999986 3467766 6799999999998764322 44678999999986 3469999999997
Q ss_pred chHHHHHHhhcccCCCCC-EEEcCC-CCChHHHHHHHHHHHHcccccccc
Q psy9637 80 SAVDDFIDKLVPLLEKGD-IIIDGG-NSEYQDTDRRSKALEAKGLLYVGC 127 (490)
Q Consensus 80 ~~v~~vl~~l~~~l~~g~-iiId~s-~~~~~~~~~~~~~l~~~gi~~ld~ 127 (490)
+..+-+.. ++. .|+ ++++-- .....+..++.+.++.+|+.|++.
T Consensus 84 qH~evv~l-~l~---~~K~VL~EKPla~n~~e~~~iveaA~~rgv~~meg 129 (351)
T KOG2741|consen 84 QHYEVVML-ALN---KGKHVLCEKPLAMNVAEAEEIVEAAEARGVFFMEG 129 (351)
T ss_pred cHHHHHHH-HHH---cCCcEEecccccCCHHHHHHHHHHHHHcCcEEEee
Confidence 55544433 322 233 555532 223567788888899999877765
|
|
| >cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0012 Score=53.82 Aligned_cols=63 Identities=21% Similarity=0.320 Sum_probs=50.0
Q ss_pred CCcEEEEcccHHHHHHHHHHHHC-CCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchH
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDH-GFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAV 82 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~-G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v 82 (490)
.++++|+|.|.+|..++..|.+. +.+|.+||| |+++.+++.+..+
T Consensus 23 ~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r----------------------------------di~i~~~~~~~~~ 68 (86)
T cd05191 23 GKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR----------------------------------DILVTATPAGVPV 68 (86)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC----------------------------------CEEEEcCCCCCCc
Confidence 36899999999999999999998 678999988 7899998876555
Q ss_pred HHHHHhhcccCCCCCEEEcCC
Q psy9637 83 DDFIDKLVPLLEKGDIIIDGG 103 (490)
Q Consensus 83 ~~vl~~l~~~l~~g~iiId~s 103 (490)
.+- ....+.++.+|+|+.
T Consensus 69 ~~~---~~~~~~~~~~v~~~a 86 (86)
T cd05191 69 LEE---ATAKINEGAVVIDLA 86 (86)
T ss_pred hHH---HHHhcCCCCEEEecC
Confidence 432 233456788998863
|
Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al |
| >PRK06199 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00096 Score=69.51 Aligned_cols=95 Identities=20% Similarity=0.266 Sum_probs=69.3
Q ss_pred CcEEEEcccHHHHHHHHHHHHC---CCeEEEEeCChHHHHHHHHcccC---CC-CeeccCCHHHHHhhCCCCcEEEEecC
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDH---GFTVVAYNRTTAKVDSFLANEAK---GT-NIIGAHSLEELVKNLKKPRRVMMLVK 77 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~---G~~V~v~dr~~~~~~~l~~~g~~---~~-~i~~~~s~~e~v~~l~~~dvIil~vp 77 (490)
.+++|||+|.++......++.- =-+|.+|||++++.++|.+.-.. +. .+..++++++++.. +|+|++|++
T Consensus 156 ~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~~~s~~eav~~---ADIVvtaT~ 232 (379)
T PRK06199 156 KVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEVVDSIEEVVRG---SDIVTYCNS 232 (379)
T ss_pred CEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEEeCCHHHHHcC---CCEEEEccC
Confidence 5799999999999999888763 24899999999999988764322 11 36678999999987 999999997
Q ss_pred CCch---HHHHHHhhcccCCCCCEEEcCCC
Q psy9637 78 AGSA---VDDFIDKLVPLLEKGDIIIDGGN 104 (490)
Q Consensus 78 ~~~~---v~~vl~~l~~~l~~g~iiId~s~ 104 (490)
+... ...+++ ...+++|..|+-.|.
T Consensus 233 s~~~~~s~~Pv~~--~~~lkpG~hv~~ig~ 260 (379)
T PRK06199 233 GETGDPSTYPYVK--REWVKPGAFLLMPAA 260 (379)
T ss_pred CCCCCCCcCcEec--HHHcCCCcEEecCCc
Confidence 6431 112332 124678888865443
|
|
| >COG5495 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.004 Score=59.20 Aligned_cols=188 Identities=9% Similarity=0.068 Sum_probs=114.7
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEE-EEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVV-AYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~-v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
+.+||||.|+.|.....+-...++.+. +-.|+++..+.+.+.. ...+.++....+..+++|+-||+. .+.
T Consensus 11 v~~~~vgtgrl~ra~~~ra~h~~~~cs~i~srS~~~a~~LaE~~--------~a~p~d~~~~ael~~~vfv~vpd~-~~s 81 (289)
T COG5495 11 VVVGIVGTGRLGRAALLRADHVVVACSAISSRSRDRAQNLAETY--------VAPPLDVAKSAELLLLVFVDVPDA-LYS 81 (289)
T ss_pred eEEEEeecchHHHHHHHHhcchheeehhhhhcCHHHHhhchhcc--------CCCccchhhChhhhceEEecchHH-HHH
Confidence 579999999999996666555555554 3468888877765532 334445544433367888888875 344
Q ss_pred HHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccc---cC-CCCCccccc--cCCccCC-CCCcchHHHHHH
Q psy9637 84 DFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVG---CG-VSGGEDGAR--YGPSLMP-GGNPAAWPALKP 156 (490)
Q Consensus 84 ~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld---~~-vsGg~~~a~--~G~~im~-GG~~~a~~~v~~ 156 (490)
.+...-. -.||++|+.||.-.. ..+.+.+.+.|..... .- .+|.++... .++.|.+ -+|+-.+..++.
T Consensus 82 ~vaa~~~--~rpg~iv~HcSga~~---~~il~~~gr~g~~~asiHP~f~Fsgl~edl~rl~d~~~~i~eaD~~g~ai~q~ 156 (289)
T COG5495 82 GVAATSL--NRPGTIVAHCSGANG---SGILAPLGRQGCIPASIHPAFSFSGLDEDLSRLKDTIFGITEADDVGYAIVQS 156 (289)
T ss_pred HHHHhcc--cCCCeEEEEccCCCc---hhhhhhhhhcCCcceeecccccccCCHHHHHhCcccEEEeecccccccHHHHH
Confidence 4433222 358999999987543 3444555555543222 22 344444443 3444433 578888888999
Q ss_pred HHHhhCCceeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHH
Q psy9637 157 IFQKLNPSFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYG 218 (490)
Q Consensus 157 ll~~l~~~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~~ 218 (490)
+-..||.++|.+-+. .....-...+....-.+..+.++..+-+.+ |+|.-
T Consensus 157 la~emgg~~f~V~~~------~r~lYHaaa~~asnf~v~~l~~a~~i~~aa------g~Dq~ 206 (289)
T COG5495 157 LALEMGGEPFCVREE------ARILYHAAAVHASNFIVTVLADALEIYRAA------GDDQP 206 (289)
T ss_pred HHHHhCCCceeechh------HHHHHHHHHHHhhccHHHHHHHHHHHHHHh------cCCCc
Confidence 999999887765442 112222233333334456778888888888 76653
|
|
| >PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1 | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00024 Score=65.48 Aligned_cols=100 Identities=13% Similarity=0.078 Sum_probs=63.6
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCee------------------ccCCHHHHHhhC
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNII------------------GAHSLEELVKNL 66 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~------------------~~~s~~e~v~~l 66 (490)
.+|.|+|.|+.|..-+..+...|++|+++|.++++.+.+...+.....+. +......+.+.+
T Consensus 21 ~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~i 100 (168)
T PF01262_consen 21 AKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESNFAEFI 100 (168)
T ss_dssp -EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHHHHHHH
T ss_pred eEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHHHHHHHH
Confidence 58999999999999999999999999999999998887766543211110 011111222333
Q ss_pred CCCcEEEEec--CCCchHHHHHHhhcccCCCCCEEEcCCC
Q psy9637 67 KKPRRVMMLV--KAGSAVDDFIDKLVPLLEKGDIIIDGGN 104 (490)
Q Consensus 67 ~~~dvIil~v--p~~~~v~~vl~~l~~~l~~g~iiId~s~ 104 (490)
+.+|+||.++ |....-.-+-++.+..++++.+|+|.|-
T Consensus 101 ~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis~ 140 (168)
T PF01262_consen 101 APADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDISC 140 (168)
T ss_dssp HH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETTG
T ss_pred hhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEEe
Confidence 3489999644 3332222222555666789999999874
|
4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A .... |
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0018 Score=55.39 Aligned_cols=95 Identities=20% Similarity=0.257 Sum_probs=62.5
Q ss_pred EEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeec-cCCHHHHHh-hCCCCcEEEEecCCCchHHH
Q psy9637 7 IGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIG-AHSLEELVK-NLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 7 IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~-~~s~~e~v~-~l~~~dvIil~vp~~~~v~~ 84 (490)
|-|+|.|.+|..++..|.+.+.+|++.|++++.++.+.+.+.. -+.. ..+++.+-+ .+++++.|+++.+++...-.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~--~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~~n~~ 78 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEGVE--VIYGDATDPEVLERAGIEKADAVVILTDDDEENLL 78 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSE--EEES-TTSHHHHHHTTGGCESEEEEESSSHHHHHH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcccc--cccccchhhhHHhhcCccccCEEEEccCCHHHHHH
Confidence 5689999999999999999877999999999999999887643 1111 233333322 35678999999988633333
Q ss_pred HHHhhcccCCCCCEEEcCC
Q psy9637 85 FIDKLVPLLEKGDIIIDGG 103 (490)
Q Consensus 85 vl~~l~~~l~~g~iiId~s 103 (490)
++..+....+...+++-..
T Consensus 79 ~~~~~r~~~~~~~ii~~~~ 97 (116)
T PF02254_consen 79 IALLARELNPDIRIIARVN 97 (116)
T ss_dssp HHHHHHHHTTTSEEEEEES
T ss_pred HHHHHHHHCCCCeEEEEEC
Confidence 3333333232345555443
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0011 Score=65.88 Aligned_cols=97 Identities=15% Similarity=0.154 Sum_probs=75.6
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCee-ccCCHHHHHhhCCCCcEEEEec--CCCch
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNII-GAHSLEELVKNLKKPRRVMMLV--KAGSA 81 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~-~~~s~~e~v~~l~~~dvIil~v--p~~~~ 81 (490)
-||.|||.|.+|.+-|+-..--|-+|++.|+|.+++..+..... .++. ...++..+.+.+..+|+||-.| |...+
T Consensus 169 ~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~--~rv~~~~st~~~iee~v~~aDlvIgaVLIpgaka 246 (371)
T COG0686 169 AKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFG--GRVHTLYSTPSNIEEAVKKADLVIGAVLIPGAKA 246 (371)
T ss_pred ccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhC--ceeEEEEcCHHHHHHHhhhccEEEEEEEecCCCC
Confidence 47999999999999999999899999999999999888765432 2332 3456666666666799999766 55445
Q ss_pred HHHHHHhhcccCCCCCEEEcCC
Q psy9637 82 VDDFIDKLVPLLEKGDIIIDGG 103 (490)
Q Consensus 82 v~~vl~~l~~~l~~g~iiId~s 103 (490)
-+-+.+++...++||.+|||..
T Consensus 247 PkLvt~e~vk~MkpGsVivDVA 268 (371)
T COG0686 247 PKLVTREMVKQMKPGSVIVDVA 268 (371)
T ss_pred ceehhHHHHHhcCCCcEEEEEE
Confidence 5566688888899999998853
|
|
| >PRK06349 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0014 Score=69.49 Aligned_cols=124 Identities=22% Similarity=0.271 Sum_probs=75.2
Q ss_pred CCCCCcEEEEcccHHHHHHHHHHHHC--------C--Ce-EEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCC
Q psy9637 1 MAAKGDIGLIGLAVMGQNLILNMNDH--------G--FT-VVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKP 69 (490)
Q Consensus 1 M~~~~~IgiIGlG~MG~~lA~~L~~~--------G--~~-V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~ 69 (490)
|+ +.+|||+|+|.||..++..|.++ | .+ +.++|+++++.+.+. ......+++++++++. +..
T Consensus 1 m~-~i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~~~~-----~~~~~~~~d~~~ll~d-~~i 73 (426)
T PRK06349 1 MK-PLKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDRGVD-----LPGILLTTDPEELVND-PDI 73 (426)
T ss_pred CC-eEEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhccCCC-----CcccceeCCHHHHhhC-CCC
Confidence 63 46899999999999999888654 3 34 346799877643221 1112357889999864 247
Q ss_pred cEEEEecCCCchHHHHHHhhcccCCCCCEEEcCCCC-ChHHHHHHHHHHHHccccc-cccCCCCCcc
Q psy9637 70 RRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNS-EYQDTDRRSKALEAKGLLY-VGCGVSGGED 134 (490)
Q Consensus 70 dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~s~~-~~~~~~~~~~~l~~~gi~~-ld~~vsGg~~ 134 (490)
|+|+.+++......+.+ ...|+.|+-||-.... ......++.+..+++|+.| +.+.|.||.+
T Consensus 74 DvVve~tg~~~~~~~~~---~~aL~~GkhVVtaNK~~~a~~~~eL~~lA~~~gv~l~fEasV~ggiP 137 (426)
T PRK06349 74 DIVVELMGGIEPARELI---LKALEAGKHVVTANKALLAVHGAELFAAAEEKGVDLYFEAAVAGGIP 137 (426)
T ss_pred CEEEECCCCchHHHHHH---HHHHHCCCeEEEcCHHHHHHHHHHHHHHHHHcCCcEEEEEEeeccCc
Confidence 99999987643333333 3445678877743221 1122333445555667754 3555555543
|
|
| >cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1 | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0027 Score=61.53 Aligned_cols=114 Identities=16% Similarity=0.218 Sum_probs=78.6
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEE-EEeC----------ChHHHHHHHHcccCCCCee--ccCCHHHHHhhCCCCcE
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVV-AYNR----------TTAKVDSFLANEAKGTNII--GAHSLEELVKNLKKPRR 71 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~-v~dr----------~~~~~~~l~~~g~~~~~i~--~~~s~~e~v~~l~~~dv 71 (490)
++|.|.|+|.+|..+++.|.+.|..|+ +.|. +.+.+.+..+....-.... ..-+++++... ++|+
T Consensus 32 ~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~~~~~~~~~i~~~--~~Dv 109 (227)
T cd01076 32 ARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGAERITNEELLEL--DCDI 109 (227)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcccCCCceecCCccceee--cccE
Confidence 689999999999999999999999998 6677 6676666554332100000 01123343332 4899
Q ss_pred EEEecCCCchHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccccccc
Q psy9637 72 VMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGC 127 (490)
Q Consensus 72 Iil~vp~~~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~ 127 (490)
++-|.+.+....+.+..+. =++|+...|... +.+..+.+.++|+.|+.-
T Consensus 110 lip~a~~~~i~~~~~~~l~-----a~~I~egAN~~~--t~~a~~~L~~rGi~~~PD 158 (227)
T cd01076 110 LIPAALENQITADNADRIK-----AKIIVEAANGPT--TPEADEILHERGVLVVPD 158 (227)
T ss_pred EEecCccCccCHHHHhhce-----eeEEEeCCCCCC--CHHHHHHHHHCCCEEECh
Confidence 9999888766666666553 468888888653 355668889999988643
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids |
| >PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0023 Score=71.06 Aligned_cols=112 Identities=11% Similarity=0.113 Sum_probs=75.0
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHH--hhCCCCcEEEEecCCCchH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELV--KNLKKPRRVMMLVKAGSAV 82 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v--~~l~~~dvIil~vp~~~~v 82 (490)
.+|-|+|.|++|..+++.|.++|+++++.|.|+++++.+.+.+.. -+..-.+-.++. ..++++|.+++++++++..
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~--v~~GDat~~~~L~~agi~~A~~vvv~~~d~~~n 478 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKFGMK--VFYGDATRMDLLESAGAAKAEVLINAIDDPQTS 478 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhcCCe--EEEEeCCCHHHHHhcCCCcCCEEEEEeCCHHHH
Confidence 579999999999999999999999999999999999998876532 112222233344 3466899999999887555
Q ss_pred HHHHHhhcccCCCC-CEEEcCCCCChHHHHHHHHHHHHcccccc
Q psy9637 83 DDFIDKLVPLLEKG-DIIIDGGNSEYQDTDRRSKALEAKGLLYV 125 (490)
Q Consensus 83 ~~vl~~l~~~l~~g-~iiId~s~~~~~~~~~~~~~l~~~gi~~l 125 (490)
..++..+.. +.|+ .+++-..+ .+....+.+.|+.++
T Consensus 479 ~~i~~~ar~-~~p~~~iiaRa~d------~~~~~~L~~~Gad~v 515 (621)
T PRK03562 479 LQLVELVKE-HFPHLQIIARARD------VDHYIRLRQAGVEKP 515 (621)
T ss_pred HHHHHHHHH-hCCCCeEEEEECC------HHHHHHHHHCCCCEE
Confidence 444443333 2333 44443322 223455666677654
|
|
| >PRK00066 ldh L-lactate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0024 Score=65.01 Aligned_cols=101 Identities=13% Similarity=0.153 Sum_probs=63.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCC--eEEEEeCChHHHHHHHHcccC----CCCeec-cCCHHHHHhhCCCCcEEEEec
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGF--TVVAYNRTTAKVDSFLANEAK----GTNIIG-AHSLEELVKNLKKPRRVMMLV 76 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~g~~----~~~i~~-~~s~~e~v~~l~~~dvIil~v 76 (490)
.+||+|||+|.+|..+|..|+..|. ++.++|++.++++.....-.. ..++.. ..+.++ ++.+|+||++.
T Consensus 6 ~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~----~~~adivIita 81 (315)
T PRK00066 6 HNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSD----CKDADLVVITA 81 (315)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCHHH----hCCCCEEEEec
Confidence 3699999999999999999999997 799999998876544321111 011222 334444 33499999876
Q ss_pred CCCc----h-----------HHHHHHhhcccCCCCCEEEcCCCCChHHHH
Q psy9637 77 KAGS----A-----------VDDFIDKLVPLLEKGDIIIDGGNSEYQDTD 111 (490)
Q Consensus 77 p~~~----~-----------v~~vl~~l~~~l~~g~iiId~s~~~~~~~~ 111 (490)
-.+. . ++++++.+..+- ++.++|..+| |.+..
T Consensus 82 g~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~-~~~~vivvsN--P~d~~ 128 (315)
T PRK00066 82 GAPQKPGETRLDLVEKNLKIFKSIVGEVMASG-FDGIFLVASN--PVDIL 128 (315)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEccC--cHHHH
Confidence 4321 1 233334444433 5667777776 44444
|
|
| >PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0013 Score=67.74 Aligned_cols=97 Identities=20% Similarity=0.248 Sum_probs=59.9
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHHC-CCeEEE-EeCChHHHHHHHHccc--CCCCeeccCCHHHHHhhCCCCcEEEEecCC
Q psy9637 4 KGDIGLIGL-AVMGQNLILNMNDH-GFTVVA-YNRTTAKVDSFLANEA--KGTNIIGAHSLEELVKNLKKPRRVMMLVKA 78 (490)
Q Consensus 4 ~~~IgiIGl-G~MG~~lA~~L~~~-G~~V~v-~dr~~~~~~~l~~~g~--~~~~i~~~~s~~e~v~~l~~~dvIil~vp~ 78 (490)
|+||+|||+ |.+|..+++.|.++ +++++. .++. +..+.+.+... .......+.++++. ..+++|+|++|+|+
T Consensus 2 m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~-~~g~~l~~~~~~~~~~~~~~~~~~~~~--~~~~vD~Vf~alP~ 78 (343)
T PRK00436 2 MIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRS-SAGKPLSDVHPHLRGLVDLVLEPLDPE--ILAGADVVFLALPH 78 (343)
T ss_pred CeEEEEECCCCHHHHHHHHHHHcCCCceEEEEECcc-ccCcchHHhCcccccccCceeecCCHH--HhcCCCEEEECCCc
Confidence 479999996 99999999999986 677654 5543 32222222110 00000013333332 12348999999999
Q ss_pred CchHHHHHHhhcccCCCCCEEEcCCCCCh
Q psy9637 79 GSAVDDFIDKLVPLLEKGDIIIDGGNSEY 107 (490)
Q Consensus 79 ~~~v~~vl~~l~~~l~~g~iiId~s~~~~ 107 (490)
+ ...+++..+. +.|..|||.|+.+-
T Consensus 79 ~-~~~~~v~~a~---~aG~~VID~S~~fR 103 (343)
T PRK00436 79 G-VSMDLAPQLL---EAGVKVIDLSADFR 103 (343)
T ss_pred H-HHHHHHHHHH---hCCCEEEECCcccC
Confidence 6 5555555443 46899999998653
|
|
| >cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0014 Score=64.95 Aligned_cols=95 Identities=19% Similarity=0.251 Sum_probs=65.2
Q ss_pred EEEEcc-cHHHHHHHHHHHHCC----CeEEEEeCChHHHHHHHHcc----c--CCCCeeccCCHHHHHhhCCCCcEEEEe
Q psy9637 7 IGLIGL-AVMGQNLILNMNDHG----FTVVAYNRTTAKVDSFLANE----A--KGTNIIGAHSLEELVKNLKKPRRVMML 75 (490)
Q Consensus 7 IgiIGl-G~MG~~lA~~L~~~G----~~V~v~dr~~~~~~~l~~~g----~--~~~~i~~~~s~~e~v~~l~~~dvIil~ 75 (490)
|+|||+ |.||..++..|+..| .+|++||+++++++.....- . ...++..++++.+.+++ +|+|+++
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~---aDiVv~t 77 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKD---ADVVIIT 77 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCC---CCEEEEC
Confidence 689999 999999999999999 79999999987766543211 0 12355556676666665 9999996
Q ss_pred cCCCc---------------hHHHHHHhhcccCCCCCEEEcCCCC
Q psy9637 76 VKAGS---------------AVDDFIDKLVPLLEKGDIIIDGGNS 105 (490)
Q Consensus 76 vp~~~---------------~v~~vl~~l~~~l~~g~iiId~s~~ 105 (490)
.-.+. .++++.+.+...- ++.++|..+|-
T Consensus 78 ~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~-p~a~~i~~tNP 121 (263)
T cd00650 78 AGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYS-PDAWIIVVSNP 121 (263)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCc
Confidence 52211 2334445555544 67788888763
|
Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains |
| >PRK15076 alpha-galactosidase; Provisional | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0018 Score=68.73 Aligned_cols=72 Identities=11% Similarity=0.120 Sum_probs=51.2
Q ss_pred CcEEEEcccHHHHHHHH--HHH----HCCCeEEEEeCChHHHHHHHH-------cccCCCCeeccCCHHHHHhhCCCCcE
Q psy9637 5 GDIGLIGLAVMGQNLIL--NMN----DHGFTVVAYNRTTAKVDSFLA-------NEAKGTNIIGAHSLEELVKNLKKPRR 71 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~--~L~----~~G~~V~v~dr~~~~~~~l~~-------~g~~~~~i~~~~s~~e~v~~l~~~dv 71 (490)
+||+|||.|.||...+. .++ -.|.+|+++|+++++++.... ......++..+++..+.++. +|+
T Consensus 2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~~~~~~~i~~ttD~~eal~d---ADf 78 (431)
T PRK15076 2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAESLGASAKITATTDRREALQG---ADY 78 (431)
T ss_pred cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhCC---CCE
Confidence 68999999999966655 443 246799999999988763221 11112356667787777766 999
Q ss_pred EEEecCCC
Q psy9637 72 VMMLVKAG 79 (490)
Q Consensus 72 Iil~vp~~ 79 (490)
|++++-.+
T Consensus 79 Vv~ti~vg 86 (431)
T PRK15076 79 VINAIQVG 86 (431)
T ss_pred EeEeeeeC
Confidence 99998664
|
|
| >PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.092 Score=54.24 Aligned_cols=197 Identities=16% Similarity=0.170 Sum_probs=123.0
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHcccCC-----------------CCe---eccCCHHHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGF-TVVAYNRTTAKVDSFLANEAKG-----------------TNI---IGAHSLEELV 63 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~g~~~-----------------~~i---~~~~s~~e~v 63 (490)
.+|-|+|.|..+--+|..+.+.+. .|-+.+|...+.+.+.+.-... +.. ....+.+++.
T Consensus 2 ~~VLI~GtGPvAiQLAv~lk~~~~~~vGi~~R~S~rSq~f~~aL~~~~~~~~v~vqn~~h~~l~G~~~id~~~~~~~~i~ 81 (429)
T PF10100_consen 2 GNVLIVGTGPVAIQLAVILKKHGNCRVGIVGRESVRSQRFFEALARSDGLFEVSVQNEQHQALSGECTIDHVFQDYEEIE 81 (429)
T ss_pred CceEEEcCCHHHHHHHHHHHhccCceeeeecCcchhHHHHHHHHHhCCCEEEEeecchhhhhhcCeEEhhHhhcCHHHhc
Confidence 479999999999999999998875 6889999888777765432210 011 1245556655
Q ss_pred hhCCCCcEEEEecCCCchHHHHHHhhcc-cCCCCCEEEcCCCCChHHHHHHHHHHHHcc--cc------cc-ccCCCCCc
Q psy9637 64 KNLKKPRRVMMLVKAGSAVDDFIDKLVP-LLEKGDIIIDGGNSEYQDTDRRSKALEAKG--LL------YV-GCGVSGGE 133 (490)
Q Consensus 64 ~~l~~~dvIil~vp~~~~v~~vl~~l~~-~l~~g~iiId~s~~~~~~~~~~~~~l~~~g--i~------~l-d~~vsGg~ 133 (490)
.. =|.+|+|||++ +-.+|+++|-+ .|..=+.||-.|...-. ..-....+.+.| +. |+ |.-.+.+.
T Consensus 82 g~---WdtlILavtaD-AY~~VL~ql~~~~L~~vk~iVLvSPtfGS-~~lv~~~l~~~~~~~EVISFStY~gdTr~~d~~ 156 (429)
T PF10100_consen 82 GE---WDTLILAVTAD-AYLDVLQQLPWEVLKRVKSIVLVSPTFGS-HLLVKGFLNDLGPDAEVISFSTYYGDTRWSDGE 156 (429)
T ss_pred cc---ccEEEEEechH-HHHHHHHhcCHHHHhhCCEEEEECcccch-HHHHHHHHHhcCCCceEEEeecccccceeccCC
Confidence 55 69999999996 77888877754 34444556666654422 222223333333 22 22 22233333
Q ss_pred ccc---ccCC--ccCCC---CCcchHHHHHHHHHhhCCcee---------------------------------------
Q psy9637 134 DGA---RYGP--SLMPG---GNPAAWPALKPIFQKLNPSFE--------------------------------------- 166 (490)
Q Consensus 134 ~~a---~~G~--~im~G---G~~~a~~~v~~ll~~l~~~~~--------------------------------------- 166 (490)
... ..|- .+.+| ++....+++..+|+.++....
T Consensus 157 ~~~~vlt~~vK~kiYigSt~~~s~~~~~l~~~~~~~gI~~~~~~~pl~AE~rNislYVHpplfmndfsL~aIF~~~~~~k 236 (429)
T PF10100_consen 157 QPNRVLTTAVKKKIYIGSTHSNSPELDKLCRLLAQLGIQLEVMDNPLEAESRNISLYVHPPLFMNDFSLNAIFEEDGVPK 236 (429)
T ss_pred CcceehhhhhhceEEEEeCCCCChHHHHHHHHHHHcCCeEEEeCChHhhhhcccceecCChHhhChhhHHHHhCCCCCcc
Confidence 221 1222 34455 344567888899999887221
Q ss_pred --e----CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhc
Q psy9637 167 --T----SAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRG 226 (490)
Q Consensus 167 --~----~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~~~v~~i~~~ 226 (490)
| -||+. ..+...+....-|.+.+..+. |++.-.+++.+..
T Consensus 237 YvYKL~PEGPIT--------------~~~I~~M~~lw~Ei~~i~~~l------~~~~~NLLkFm~d 282 (429)
T PF10100_consen 237 YVYKLFPEGPIT--------------PTLIRDMVQLWKEIMEILNKL------GIEPFNLLKFMND 282 (429)
T ss_pred eEEecCCCCCCC--------------HHHHHHHHHHHHHHHHHHHHc------CCCcchHHHHhcc
Confidence 1 24431 334556677889999999999 8988888888754
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0039 Score=66.37 Aligned_cols=100 Identities=14% Similarity=0.194 Sum_probs=68.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCe-ec-cCCHHHHH-hhCCCCcEEEEecCCCc
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNI-IG-AHSLEELV-KNLKKPRRVMMLVKAGS 80 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i-~~-~~s~~e~v-~~l~~~dvIil~vp~~~ 80 (490)
+++|-|+|+|.+|..+++.|.+.|++|++.|+++++.+.+.+.+.. ..+ .. ..+.+.+. ..++.+|.|+++.+++
T Consensus 231 ~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~-~~~i~gd~~~~~~L~~~~~~~a~~vi~~~~~~- 308 (453)
T PRK09496 231 VKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPN-TLVLHGDGTDQELLEEEGIDEADAFIALTNDD- 308 (453)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCC-CeEEECCCCCHHHHHhcCCccCCEEEECCCCc-
Confidence 4689999999999999999999999999999999999888765311 111 11 23444332 2456799999888875
Q ss_pred hHHHHHHhhcccCCCCCEEEcCCCC
Q psy9637 81 AVDDFIDKLVPLLEKGDIIIDGGNS 105 (490)
Q Consensus 81 ~v~~vl~~l~~~l~~g~iiId~s~~ 105 (490)
...-.+..+...+.+..+|+-..+.
T Consensus 309 ~~n~~~~~~~~~~~~~~ii~~~~~~ 333 (453)
T PRK09496 309 EANILSSLLAKRLGAKKVIALVNRP 333 (453)
T ss_pred HHHHHHHHHHHHhCCCeEEEEECCc
Confidence 3333333344445555666655543
|
|
| >TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating) | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0023 Score=63.88 Aligned_cols=93 Identities=18% Similarity=0.195 Sum_probs=63.5
Q ss_pred CcEEEEcccHHHHHHHHHHHHC-CCeEE-EEeCChHHHH-HHHH-cccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCc
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDH-GFTVV-AYNRTTAKVD-SFLA-NEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGS 80 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~-G~~V~-v~dr~~~~~~-~l~~-~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~ 80 (490)
++|||||+|.||..++..+.+. ++++. ++|+++++.. .+.+ .|.. ..+++.+++++. ++.|+|++++|+..
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A~~~Gi~----~~~~~~e~ll~~-~dIDaV~iaTp~~~ 76 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARARELGVK----TSAEGVDGLLAN-PDIDIVFDATSAKA 76 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHHHHCCCC----EEECCHHHHhcC-CCCCEEEECCCcHH
Confidence 5899999999999998888753 56665 5788887533 2232 2321 235678888864 35799999999963
Q ss_pred hHHHHHHhhcccCCCCCEEEcCCCCC
Q psy9637 81 AVDDFIDKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 81 ~v~~vl~~l~~~l~~g~iiId~s~~~ 106 (490)
. .+.... .++.|..|||.+...
T Consensus 77 H-~e~a~~---al~aGk~VIdekPa~ 98 (285)
T TIGR03215 77 H-ARHARL---LAELGKIVIDLTPAA 98 (285)
T ss_pred H-HHHHHH---HHHcCCEEEECCccc
Confidence 3 333332 345789999887643
|
Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc. |
| >cd00300 LDH_like L-lactate dehydrogenase-like enzymes | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0024 Score=64.57 Aligned_cols=98 Identities=16% Similarity=0.157 Sum_probs=64.4
Q ss_pred EEEEcccHHHHHHHHHHHHCC--CeEEEEeCChHHHHHHHHcccC------CCCeeccCCHHHHHhhCCCCcEEEEecCC
Q psy9637 7 IGLIGLAVMGQNLILNMNDHG--FTVVAYNRTTAKVDSFLANEAK------GTNIIGAHSLEELVKNLKKPRRVMMLVKA 78 (490)
Q Consensus 7 IgiIGlG~MG~~lA~~L~~~G--~~V~v~dr~~~~~~~l~~~g~~------~~~i~~~~s~~e~v~~l~~~dvIil~vp~ 78 (490)
|+|||+|.+|..+|..|+..| .+++++|+++++++.....-.. ..++....+.++ ++.+|+||++...
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~~~~----l~~aDiVIitag~ 76 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGDYAD----AADADIVVITAGA 76 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCCHHH----hCCCCEEEEcCCC
Confidence 689999999999999999999 6899999998877655432111 112332344433 3348999999865
Q ss_pred Cc---------------hHHHHHHhhcccCCCCCEEEcCCCCChHHHH
Q psy9637 79 GS---------------AVDDFIDKLVPLLEKGDIIIDGGNSEYQDTD 111 (490)
Q Consensus 79 ~~---------------~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~ 111 (490)
+. .++++...+.++- |+.+||..|| |.+..
T Consensus 77 p~~~~~~R~~l~~~n~~i~~~~~~~i~~~~-p~~~viv~sN--P~d~~ 121 (300)
T cd00300 77 PRKPGETRLDLINRNAPILRSVITNLKKYG-PDAIILVVSN--PVDIL 121 (300)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEccC--hHHHH
Confidence 32 1333444555544 6777888876 44443
|
Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot |
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0017 Score=69.71 Aligned_cols=97 Identities=16% Similarity=0.149 Sum_probs=67.2
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeec-------------cCCH-H-----HHHhh
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIG-------------AHSL-E-----ELVKN 65 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~-------------~~s~-~-----e~v~~ 65 (490)
.++.|+|.|.+|...+..+...|..|+++|+++++.+.+...+.....+.. .++. . .+.+.
T Consensus 165 akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~~e~ 244 (511)
T TIGR00561 165 AKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMELFAAQ 244 (511)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHHHHHHHH
Confidence 589999999999999999999999999999999988877765543100000 0000 0 02334
Q ss_pred CCCCcEEEEec-----CCCchHHHHHHhhcccCCCCCEEEcCCC
Q psy9637 66 LKKPRRVMMLV-----KAGSAVDDFIDKLVPLLEKGDIIIDGGN 104 (490)
Q Consensus 66 l~~~dvIil~v-----p~~~~v~~vl~~l~~~l~~g~iiId~s~ 104 (490)
++.+|+||.++ |.+ .-+.++....+++|.+|||.+.
T Consensus 245 ~~~~DIVI~TalipG~~aP---~Lit~emv~~MKpGsvIVDlA~ 285 (511)
T TIGR00561 245 AKEVDIIITTALIPGKPAP---KLITEEMVDSMKAGSVIVDLAA 285 (511)
T ss_pred hCCCCEEEECcccCCCCCC---eeehHHHHhhCCCCCEEEEeee
Confidence 55699999988 332 1223555667889999999875
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0017 Score=66.89 Aligned_cols=95 Identities=14% Similarity=0.219 Sum_probs=61.3
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHC-CCeEE-EEeCChHHHHHHHHccc--CCC-Ceec-cCCHHHHHhhCCCCcEEEEecC
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDH-GFTVV-AYNRTTAKVDSFLANEA--KGT-NIIG-AHSLEELVKNLKKPRRVMMLVK 77 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~g~--~~~-~i~~-~~s~~e~v~~l~~~dvIil~vp 77 (490)
+||+|||. |.+|..+.+.|.++ ++++. ++++++..-+.+.+... ... .... ..+.+++.+. +|+||+|+|
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~DvVf~alP 77 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAED---ADVVFLALP 77 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhcC---CCEEEECCC
Confidence 48999998 99999999999977 67777 55655433222222111 000 0001 1245555543 899999999
Q ss_pred CCchHHHHHHhhcccCCCCCEEEcCCCCC
Q psy9637 78 AGSAVDDFIDKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 78 ~~~~v~~vl~~l~~~l~~g~iiId~s~~~ 106 (490)
++ ...+++..+. ..|..|||.|+.+
T Consensus 78 ~~-~s~~~~~~~~---~~G~~VIDlS~~f 102 (346)
T TIGR01850 78 HG-VSAELAPELL---AAGVKVIDLSADF 102 (346)
T ss_pred ch-HHHHHHHHHH---hCCCEEEeCChhh
Confidence 96 5555555543 4689999999865
|
This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons. |
| >PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0021 Score=67.13 Aligned_cols=102 Identities=16% Similarity=0.124 Sum_probs=71.9
Q ss_pred CcEEEEcccHHHHH-HHHHHHHCCCeEEEEeCChHHHHHHHHcccC------CC-------Ceecc--CCHHHHHhhCCC
Q psy9637 5 GDIGLIGLAVMGQN-LILNMNDHGFTVVAYNRTTAKVDSFLANEAK------GT-------NIIGA--HSLEELVKNLKK 68 (490)
Q Consensus 5 ~~IgiIGlG~MG~~-lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~------~~-------~i~~~--~s~~e~v~~l~~ 68 (490)
|||.++|.|.||++ ++..|.+.|++|++.|++++.++.+.+.|.- .. .+... .+.+++.+.+..
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~~g~~V~~vd~~~~~v~aL~~qglY~v~~~~~~~~~~~i~~v~~~~~~~~~~~~~~~~~ 80 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLADNGFEVTFVDVNQELIDALNKRKSYQVIVVGENEQVETVSNVSAINSADEEAVIEAIAE 80 (381)
T ss_pred CceEEECCchhhHHHHHHHHHhCCCeEEEEECCHHHHHHHhcCCCeEEEEecCCCcEEEEeeEeeeCCCCHHHHHHHhcC
Confidence 58999999999985 5888899999999999999999999877531 11 11112 133555555556
Q ss_pred CcEEEEecCCCchHHHHHHhhcccC--------CCCCEEEcCCCCCh
Q psy9637 69 PRRVMMLVKAGSAVDDFIDKLVPLL--------EKGDIIIDGGNSEY 107 (490)
Q Consensus 69 ~dvIil~vp~~~~v~~vl~~l~~~l--------~~g~iiId~s~~~~ 107 (490)
+|+|.++|... ..+.+...|.+.| .++-+|+.|-|...
T Consensus 81 ~dlvt~~v~~~-~~~s~~~~l~~~L~~R~~~~~~~~~~VlsceN~~~ 126 (381)
T PRK02318 81 ADLVTTAVGPN-ILPFIAPLIAKGLKKRKAQGNTKPLNIIACENMIR 126 (381)
T ss_pred CCEEEeCCCcc-cchhHHHHHHHHHHHHHHcCCCCCCEEEecCChhh
Confidence 89999999874 5566665555444 23347888888653
|
|
| >PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0037 Score=64.31 Aligned_cols=95 Identities=14% Similarity=0.137 Sum_probs=60.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHHC-CCeEE-EEeCChHHHHHHHHc-cc-------------CCCCeeccCCHHHHHhhCC
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDH-GFTVV-AYNRTTAKVDSFLAN-EA-------------KGTNIIGAHSLEELVKNLK 67 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~-g~-------------~~~~i~~~~s~~e~v~~l~ 67 (490)
|+||||+|+|+||..+++.+.++ +++|+ ++|++++....+.+. |. ....+....++.++...
T Consensus 1 ~ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~~-- 78 (341)
T PRK04207 1 MIKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLEK-- 78 (341)
T ss_pred CeEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhhcc--
Confidence 36999999999999999988764 56766 457776555544432 10 01123445566666644
Q ss_pred CCcEEEEecCCCchHHHHHHhhcccCCCCCEEEcCCCC
Q psy9637 68 KPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNS 105 (490)
Q Consensus 68 ~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~s~~ 105 (490)
+|+|+.|.|.. ...+.... +++.|..+|+.+..
T Consensus 79 -vDVVIdaT~~~-~~~e~a~~---~~~aGk~VI~~~~~ 111 (341)
T PRK04207 79 -ADIVVDATPGG-VGAKNKEL---YEKAGVKAIFQGGE 111 (341)
T ss_pred -CCEEEECCCch-hhHHHHHH---HHHCCCEEEEcCCC
Confidence 78888888775 33333332 34456777777653
|
|
| >PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0022 Score=63.97 Aligned_cols=73 Identities=19% Similarity=0.317 Sum_probs=57.9
Q ss_pred CcEEEEcccH-HHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 5 GDIGLIGLAV-MGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 5 ~~IgiIGlG~-MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
++|.|||.|. +|.++|..|.+.|.+|+++++.. .++.+.+.+ +|+||.+++....+.
T Consensus 159 k~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t-------------------~~l~~~~~~---ADIVIsAvg~p~~i~ 216 (286)
T PRK14175 159 KNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRS-------------------KDMASYLKD---ADVIVSAVGKPGLVT 216 (286)
T ss_pred CEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc-------------------hhHHHHHhh---CCEEEECCCCCcccC
Confidence 5899999988 99999999999999999998642 244555665 999999998864322
Q ss_pred HHHHhhcccCCCCCEEEcCCCC
Q psy9637 84 DFIDKLVPLLEKGDIIIDGGNS 105 (490)
Q Consensus 84 ~vl~~l~~~l~~g~iiId~s~~ 105 (490)
. + .+++|.+|||.+..
T Consensus 217 ~---~---~vk~gavVIDvGi~ 232 (286)
T PRK14175 217 K---D---VVKEGAVIIDVGNT 232 (286)
T ss_pred H---H---HcCCCcEEEEcCCC
Confidence 2 2 46789999999974
|
|
| >PRK06270 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.004 Score=64.07 Aligned_cols=128 Identities=15% Similarity=0.165 Sum_probs=73.5
Q ss_pred CcEEEEcccHHHHHHHHHHHHC----------CCeEE-EEeC----------ChHHHHHHHHcccCCCC---eeccCCHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDH----------GFTVV-AYNR----------TTAKVDSFLANEAKGTN---IIGAHSLE 60 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~----------G~~V~-v~dr----------~~~~~~~l~~~g~~~~~---i~~~~s~~ 60 (490)
.+|+|+|+|.||..+++.|.++ +.+|+ ++|+ +.+....+.+....... ...+.++.
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 82 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEISGL 82 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCCHH
Confidence 5899999999999999998765 35544 5675 34444444432211000 01234788
Q ss_pred HHHhhCCCCcEEEEecCCCchH-HHHHHhhcccCCCCCEEEcCCCCCh-HHHHHHHHHHHHcccccc-ccCCCCCc
Q psy9637 61 ELVKNLKKPRRVMMLVKAGSAV-DDFIDKLVPLLEKGDIIIDGGNSEY-QDTDRRSKALEAKGLLYV-GCGVSGGE 133 (490)
Q Consensus 61 e~v~~l~~~dvIil~vp~~~~v-~~vl~~l~~~l~~g~iiId~s~~~~-~~~~~~~~~l~~~gi~~l-d~~vsGg~ 133 (490)
++++. +.+|+|+.|+|+.... +...+-+...|..|..||-.+.... ....++.+..+++|..|. .+.|.+|.
T Consensus 83 ell~~-~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~g~~~~~ea~v~~gl 157 (341)
T PRK06270 83 EVIRS-VDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKKNGVRFRYEATVGGAM 157 (341)
T ss_pred HHhhc-cCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHcCCEEEEeeeeeech
Confidence 88764 2489999999975332 1122233445667888876543211 122344455556677653 45554444
|
|
| >PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0014 Score=56.65 Aligned_cols=103 Identities=18% Similarity=0.326 Sum_probs=68.9
Q ss_pred CcEEEEc----ccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCc
Q psy9637 5 GDIGLIG----LAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGS 80 (490)
Q Consensus 5 ~~IgiIG----lG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~ 80 (490)
++|+||| -+..|.-+..+|.++||+|+..|.....+ ..+..+.+++|.-. .+|++++++|. .
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i----------~G~~~y~sl~e~p~---~iDlavv~~~~-~ 66 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEI----------LGIKCYPSLAEIPE---PIDLAVVCVPP-D 66 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEE----------TTEE-BSSGGGCSS---T-SEEEE-S-H-H
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEE----------CcEEeeccccCCCC---CCCEEEEEcCH-H
Confidence 3699999 79999999999999999999988764211 12346788887323 38999999998 4
Q ss_pred hHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccc
Q psy9637 81 AVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVG 126 (490)
Q Consensus 81 ~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld 126 (490)
.+.++++++... ....+++..+ ....+..+.+++.|++++.
T Consensus 67 ~~~~~v~~~~~~-g~~~v~~~~g----~~~~~~~~~a~~~gi~vig 107 (116)
T PF13380_consen 67 KVPEIVDEAAAL-GVKAVWLQPG----AESEELIEAAREAGIRVIG 107 (116)
T ss_dssp HHHHHHHHHHHH-T-SEEEE-TT----S--HHHHHHHHHTT-EEEE
T ss_pred HHHHHHHHHHHc-CCCEEEEEcc----hHHHHHHHHHHHcCCEEEe
Confidence 788888887654 4566777666 3345556777788888764
|
|
| >PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0021 Score=63.97 Aligned_cols=74 Identities=18% Similarity=0.285 Sum_probs=59.1
Q ss_pred CcEEEEcccHH-HHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 5 GDIGLIGLAVM-GQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 5 ~~IgiIGlG~M-G~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
++|.|||.+.. |.+++..|.+.|..|++++.. +.++.+.+.+ +|+||++++...-+.
T Consensus 159 k~vvViGrs~iVGkPla~lL~~~~atVt~~hs~-------------------t~~l~~~~~~---ADIVV~avG~~~~i~ 216 (285)
T PRK14189 159 AHAVVIGRSNIVGKPMAMLLLQAGATVTICHSK-------------------TRDLAAHTRQ---ADIVVAAVGKRNVLT 216 (285)
T ss_pred CEEEEECCCCccHHHHHHHHHHCCCEEEEecCC-------------------CCCHHHHhhh---CCEEEEcCCCcCccC
Confidence 57999999888 999999999999999997642 3456666666 999999999764322
Q ss_pred HHHHhhcccCCCCCEEEcCCCCC
Q psy9637 84 DFIDKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 84 ~vl~~l~~~l~~g~iiId~s~~~ 106 (490)
. ..+++|.+|||.|...
T Consensus 217 ~------~~ik~gavVIDVGin~ 233 (285)
T PRK14189 217 A------DMVKPGATVIDVGMNR 233 (285)
T ss_pred H------HHcCCCCEEEEccccc
Confidence 2 4578999999999753
|
|
| >cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0063 Score=58.50 Aligned_cols=113 Identities=14% Similarity=0.165 Sum_probs=74.6
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCe-EEEEeCCh----------HHHHHHHHcccCCCCeec--cCCHHHHHhhCCCCcE
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFT-VVAYNRTT----------AKVDSFLANEAKGTNIIG--AHSLEELVKNLKKPRR 71 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~-V~v~dr~~----------~~~~~l~~~g~~~~~i~~--~~s~~e~v~~l~~~dv 71 (490)
++|.|.|+|++|..+|+.|.+.|.. |.+.|.+. +.++...+.+.. ..+.. ..+.+++.. + ++|+
T Consensus 24 ~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~-~~~~~~~~~~~~~l~~-~-~~DV 100 (217)
T cd05211 24 LTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYAVALGGS-ARVKVQDYFPGEAILG-L-DVDI 100 (217)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCc-cccCcccccCccccee-c-cccE
Confidence 6899999999999999999999884 55678887 666655444321 01100 112233332 2 5899
Q ss_pred EEEecCCCchHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccccccc
Q psy9637 72 VMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGC 127 (490)
Q Consensus 72 Iil~vp~~~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~ 127 (490)
++-|.+.+....+....+ +=++|+...|.. .+ .+..+.+.++|+.|+.-
T Consensus 101 lipaA~~~~i~~~~a~~l-----~a~~V~e~AN~p-~t-~~a~~~L~~~Gi~v~Pd 149 (217)
T cd05211 101 FAPCALGNVIDLENAKKL-----KAKVVAEGANNP-TT-DEALRILHERGIVVAPD 149 (217)
T ss_pred EeeccccCccChhhHhhc-----CccEEEeCCCCC-CC-HHHHHHHHHCCcEEECh
Confidence 999988875444444443 246888888854 22 35668889999877543
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral |
| >COG2910 Putative NADH-flavin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0027 Score=58.57 Aligned_cols=72 Identities=21% Similarity=0.253 Sum_probs=53.2
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCC
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAG 79 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~ 79 (490)
|||+|||. |..|..++.-..+.||+|+.+-||+++...+...-.... -.-+++.+.+.|..-|+||.+.-..
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~~~~~i~q~---Difd~~~~a~~l~g~DaVIsA~~~~ 73 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAARQGVTILQK---DIFDLTSLASDLAGHDAVISAFGAG 73 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhccccccceeecc---cccChhhhHhhhcCCceEEEeccCC
Confidence 58999996 999999999999999999999999998866421111001 1234555555566689999998654
|
|
| >cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2 | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0054 Score=59.36 Aligned_cols=106 Identities=14% Similarity=0.186 Sum_probs=69.3
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCe---EEEEeCC----hHHH-------HHHHHcccCCCCeeccCCHHHHHhhCCCCc
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFT---VVAYNRT----TAKV-------DSFLANEAKGTNIIGAHSLEELVKNLKKPR 70 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~---V~v~dr~----~~~~-------~~l~~~g~~~~~i~~~~s~~e~v~~l~~~d 70 (490)
++|-|+|.|.+|..+|..|.+.|.. |+++||+ .++. +.+.+.... .. ...++.+.+.. +|
T Consensus 26 ~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~-~~--~~~~l~~~l~~---~d 99 (226)
T cd05311 26 VKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNP-EK--TGGTLKEALKG---AD 99 (226)
T ss_pred CEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhcc-Cc--ccCCHHHHHhc---CC
Confidence 5899999999999999999999974 9999998 4432 233322110 01 11356566655 99
Q ss_pred EEEEecCCCchHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccc
Q psy9637 71 RVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLL 123 (490)
Q Consensus 71 vIil~vp~~~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~ 123 (490)
+||-++|.+....++++.+ .++.+|++.+|-.+ ....+...+.|..
T Consensus 100 vlIgaT~~G~~~~~~l~~m----~~~~ivf~lsnP~~---e~~~~~A~~~ga~ 145 (226)
T cd05311 100 VFIGVSRPGVVKKEMIKKM----AKDPIVFALANPVP---EIWPEEAKEAGAD 145 (226)
T ss_pred EEEeCCCCCCCCHHHHHhh----CCCCEEEEeCCCCC---cCCHHHHHHcCCc
Confidence 9999998665444555444 46788889886433 2233444445553
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph |
| >PRK05442 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0029 Score=64.65 Aligned_cols=107 Identities=11% Similarity=0.133 Sum_probs=64.5
Q ss_pred CCCCCcEEEEcc-cHHHHHHHHHHHHCCC-------eEEEEeCChH--HHHH----HHHcc-cCCCCeeccCCHHHHHhh
Q psy9637 1 MAAKGDIGLIGL-AVMGQNLILNMNDHGF-------TVVAYNRTTA--KVDS----FLANE-AKGTNIIGAHSLEELVKN 65 (490)
Q Consensus 1 M~~~~~IgiIGl-G~MG~~lA~~L~~~G~-------~V~v~dr~~~--~~~~----l~~~g-~~~~~i~~~~s~~e~v~~ 65 (490)
|+.++||+|||+ |.+|..+|..|...|. ++.++|+++. +++. +.... ....++....+..+.
T Consensus 1 ~~~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~y~~--- 77 (326)
T PRK05442 1 MKAPVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITDDPNVA--- 77 (326)
T ss_pred CCCCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEecChHHH---
Confidence 777889999998 9999999999988764 7999999543 2221 11111 000112222233233
Q ss_pred CCCCcEEEEecCC----Cc-----------hHHHHHHhhcccCCCCCEEEcCCCCChHHHHH
Q psy9637 66 LKKPRRVMMLVKA----GS-----------AVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDR 112 (490)
Q Consensus 66 l~~~dvIil~vp~----~~-----------~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~ 112 (490)
++++|+|+++--. +. .++++...+.++-++..++|-.|| |-+..-
T Consensus 78 ~~daDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsN--PvDv~t 137 (326)
T PRK05442 78 FKDADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGN--PANTNA 137 (326)
T ss_pred hCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCC--chHHHH
Confidence 3348999987642 11 133444556665556778888886 444443
|
|
| >PRK10206 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0082 Score=61.82 Aligned_cols=111 Identities=14% Similarity=0.194 Sum_probs=70.4
Q ss_pred CcEEEEcccHHHH-HHHHHHHH--CCCeEE-EEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCc
Q psy9637 5 GDIGLIGLAVMGQ-NLILNMND--HGFTVV-AYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGS 80 (490)
Q Consensus 5 ~~IgiIGlG~MG~-~lA~~L~~--~G~~V~-v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~ 80 (490)
.||||||+|.++. ..+..+.. .+++|+ ++|+++++. ++.+... .+..+++++++++. ++.|+|++++|+..
T Consensus 2 irvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~-~~~~~~~---~~~~~~~~~ell~~-~~iD~V~I~tp~~~ 76 (344)
T PRK10206 2 INCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPE-EQAPIYS---HIHFTSDLDEVLND-PDVKLVVVCTHADS 76 (344)
T ss_pred eEEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHH-HHHHhcC---CCcccCCHHHHhcC-CCCCEEEEeCCchH
Confidence 5899999999775 34454533 357765 689997654 4433221 12357899999974 34799999999975
Q ss_pred hHHHHHHhhcccCCCCC-EEEcCC-CCChHHHHHHHHHHHHccccc
Q psy9637 81 AVDDFIDKLVPLLEKGD-IIIDGG-NSEYQDTDRRSKALEAKGLLY 124 (490)
Q Consensus 81 ~v~~vl~~l~~~l~~g~-iiId~s-~~~~~~~~~~~~~l~~~gi~~ 124 (490)
..+-++..+ +.|+ ++++-= .....+.+++.+..+++|+.+
T Consensus 77 H~~~~~~al----~aGkhVl~EKPla~~~~ea~~l~~~a~~~~~~l 118 (344)
T PRK10206 77 HFEYAKRAL----EAGKNVLVEKPFTPTLAEAKELFALAKSKGLTV 118 (344)
T ss_pred HHHHHHHHH----HcCCcEEEecCCcCCHHHHHHHHHHHHHhCCEE
Confidence 555444433 3444 555521 113466777777777777654
|
|
| >COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0024 Score=63.72 Aligned_cols=117 Identities=17% Similarity=0.215 Sum_probs=77.0
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHcccCCC-CeeccCCHHHHHhhCCCCcEEEEecCCCchH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGF-TVVAYNRTTAKVDSFLANEAKGT-NIIGAHSLEELVKNLKKPRRVMMLVKAGSAV 82 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~g~~~~-~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v 82 (490)
.++.|+|.|-++++++..|++.|. +++++||+.++.+++.+...... .+ ......++.. ++.+|+||-++|.+-.-
T Consensus 127 ~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~~~~-~~~~~~~~~~-~~~~dliINaTp~Gm~~ 204 (283)
T COG0169 127 KRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELGAAV-EAAALADLEG-LEEADLLINATPVGMAG 204 (283)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccccc-cccccccccc-ccccCEEEECCCCCCCC
Confidence 579999999999999999999994 79999999999999876543211 11 1122222211 11379999999988544
Q ss_pred HH---HHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccccccc
Q psy9637 83 DD---FIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGC 127 (490)
Q Consensus 83 ~~---vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~ 127 (490)
.. .+. ...+.++.++.|+--.. ..| ...+..+++|...+|.
T Consensus 205 ~~~~~~~~--~~~l~~~~~v~D~vY~P-~~T-plL~~A~~~G~~~idG 248 (283)
T COG0169 205 PEGDSPVP--AELLPKGAIVYDVVYNP-LET-PLLREARAQGAKTIDG 248 (283)
T ss_pred CCCCCCCc--HHhcCcCCEEEEeccCC-CCC-HHHHHHHHcCCeEECc
Confidence 32 112 34577899999985432 222 3445566677654443
|
|
| >KOG3124|consensus | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0035 Score=60.71 Aligned_cols=147 Identities=17% Similarity=0.226 Sum_probs=91.5
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC----eEEEEeCChHHHHH-HHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCC
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGF----TVVAYNRTTAKVDS-FLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAG 79 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~----~V~v~dr~~~~~~~-l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~ 79 (490)
|+|||||.|+|...+++.+.+.|. ++..+-.+...... +...|.+ .+.+..+.++. +|+++++|++
T Consensus 1 ~~~gfigag~ma~ala~g~~~~Gi~~~~~i~~s~~~~~~~~~~~~~~g~~-----~~~~n~~~~~~---s~v~~~svKp- 71 (267)
T KOG3124|consen 1 MKVGFIGAGNMAQALASGFVASGIIEANRIWASVQTERSLGLMFEALGVK-----TVFTNLEVLQA---SDVVFLSVKP- 71 (267)
T ss_pred CceeEechhhhHHHHHhcccccCCCchhheeeecCchhhhhhhhhcCCce-----eeechHHHHhh---ccceeEeecc-
Confidence 479999999999999999999885 45566553333333 4443332 34444666665 8999999998
Q ss_pred chHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCCCccccccCCccCCCC---CcchHHHHHH
Q psy9637 80 SAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGGEDGARYGPSLMPGG---NPAAWPALKP 156 (490)
Q Consensus 80 ~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg~~~a~~G~~im~GG---~~~a~~~v~~ 156 (490)
..+..++.++.+.+..++||+.+--+....+.+ +.+. -..+.+-+ +.-.|....+|.+++.-| ..+..+.++.
T Consensus 72 ~~i~~vls~~~~~~~~~~iivS~aaG~tl~~l~--~~l~-~~~rviRv-mpNtp~~v~eg~sv~~~g~~~~~~D~~l~~~ 147 (267)
T KOG3124|consen 72 QVIESVLSEIKPKVSKGKIIVSVAAGKTLSSLE--SKLS-PPTRVIRV-MPNTPSVVGEGASVYAIGCHATNEDLELVEE 147 (267)
T ss_pred hhHHHHhhcCccccccceEEEEEeecccHHHHH--HhcC-CCCceEEe-cCCChhhhhcCcEEEeeCCCcchhhHHHHHH
Confidence 589999999988888999999876554332222 2221 01111111 111223334555433333 2355678888
Q ss_pred HHHhhCCc
Q psy9637 157 IFQKLNPS 164 (490)
Q Consensus 157 ll~~l~~~ 164 (490)
+|..+|..
T Consensus 148 ll~~vG~~ 155 (267)
T KOG3124|consen 148 LLSAVGLC 155 (267)
T ss_pred HHHhcCcc
Confidence 88888763
|
|
| >cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0051 Score=62.38 Aligned_cols=98 Identities=13% Similarity=0.175 Sum_probs=59.9
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCCe--EEEEeCCh--HHHHHHH----Hc---ccCCCCeeccCCHHHHHhhCCCCcEE
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDHGFT--VVAYNRTT--AKVDSFL----AN---EAKGTNIIGAHSLEELVKNLKKPRRV 72 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~G~~--V~v~dr~~--~~~~~l~----~~---g~~~~~i~~~~s~~e~v~~l~~~dvI 72 (490)
|||+|||. |.+|..++..|+..|+. |+++|+++ ++++... +. .....++....+.++ +. .+|+|
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d~~~-l~---~aDiV 76 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSDLSD-VA---GSDIV 76 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEECCCHHH-hC---CCCEE
Confidence 58999997 99999999999999974 99999964 3332211 10 000113433445444 33 38999
Q ss_pred EEecCCCc---------------hHHHHHHhhcccCCCCCEEEcCCCCCh
Q psy9637 73 MMLVKAGS---------------AVDDFIDKLVPLLEKGDIIIDGGNSEY 107 (490)
Q Consensus 73 il~vp~~~---------------~v~~vl~~l~~~l~~g~iiId~s~~~~ 107 (490)
|+++..+. .++++...+.+.. ++.+||-.+|..+
T Consensus 77 iitag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~-~~~~viv~~npvd 125 (309)
T cd05294 77 IITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFA-PDTKILVVTNPVD 125 (309)
T ss_pred EEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEeCCchH
Confidence 99995321 1333445555555 4555665665443
|
The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox |
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0052 Score=66.19 Aligned_cols=100 Identities=15% Similarity=0.154 Sum_probs=66.1
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeecc--------------CCHHH-----HHhh
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGA--------------HSLEE-----LVKN 65 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~--------------~s~~e-----~v~~ 65 (490)
.+|.|+|.|.+|...+..+...|.+|+++|+++++.+...+.|+....+... .+..+ +.+.
T Consensus 166 ~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~~~~~ 245 (509)
T PRK09424 166 AKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMALFAEQ 245 (509)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHHHHhc
Confidence 5799999999999999999999999999999999999888766531001000 01101 1122
Q ss_pred CCCCcEEEEecCCCc--hHHHHHHhhcccCCCCCEEEcCCC
Q psy9637 66 LKKPRRVMMLVKAGS--AVDDFIDKLVPLLEKGDIIIDGGN 104 (490)
Q Consensus 66 l~~~dvIil~vp~~~--~v~~vl~~l~~~l~~g~iiId~s~ 104 (490)
+..+|+||.++..+. +-.-+.++....+++|.+|+|.+.
T Consensus 246 ~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 246 AKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred cCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 245788888875421 112223556666778888888765
|
|
| >PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0068 Score=55.82 Aligned_cols=69 Identities=19% Similarity=0.241 Sum_probs=53.2
Q ss_pred EEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCee-ccCCHHHHHhhCCCCcEEEEecCCC
Q psy9637 7 IGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNII-GAHSLEELVKNLKKPRRVMMLVKAG 79 (490)
Q Consensus 7 IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~-~~~s~~e~v~~l~~~dvIil~vp~~ 79 (490)
|.|+|. |.+|..+++.|.+.||+|+++.|++++.+. ..+.+ .+. -..+++.+.+.++.+|+|+.+++..
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~--~~~~~--~~~~d~~d~~~~~~al~~~d~vi~~~~~~ 71 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED--SPGVE--IIQGDLFDPDSVKAALKGADAVIHAAGPP 71 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH--CTTEE--EEESCTTCHHHHHHHHTTSSEEEECCHST
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc--ccccc--cceeeehhhhhhhhhhhhcchhhhhhhhh
Confidence 678995 999999999999999999999999998776 22211 011 1356666667777799999999764
|
... |
| >PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0049 Score=61.37 Aligned_cols=74 Identities=22% Similarity=0.322 Sum_probs=59.3
Q ss_pred CcEEEEcccH-HHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 5 GDIGLIGLAV-MGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 5 ~~IgiIGlG~-MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
+++.|||-+. +|.++|..|.+.|..|+++++. +.++.+.+.. +|+||.++.-+..+.
T Consensus 160 k~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~-------------------T~~l~~~~~~---ADIvi~avG~p~~v~ 217 (285)
T PRK10792 160 LNAVVVGASNIVGRPMSLELLLAGCTVTVCHRF-------------------TKNLRHHVRN---ADLLVVAVGKPGFIP 217 (285)
T ss_pred CEEEEECCCcccHHHHHHHHHHCCCeEEEEECC-------------------CCCHHHHHhh---CCEEEEcCCCccccc
Confidence 5899999988 9999999999999999999753 3456666776 999999996654332
Q ss_pred HHHHhhcccCCCCCEEEcCCCCC
Q psy9637 84 DFIDKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 84 ~vl~~l~~~l~~g~iiId~s~~~ 106 (490)
. ..+++|.+|||.|...
T Consensus 218 ~------~~vk~gavVIDvGin~ 234 (285)
T PRK10792 218 G------EWIKPGAIVIDVGINR 234 (285)
T ss_pred H------HHcCCCcEEEEccccc
Confidence 2 4578999999999643
|
|
| >TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.011 Score=56.08 Aligned_cols=33 Identities=18% Similarity=0.474 Sum_probs=30.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCC-eEEEEeCC
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGF-TVVAYNRT 36 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~ 36 (490)
..+|+|||+|.||..+|.+|++.|+ +++++|++
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 3689999999999999999999999 69999998
|
Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter. |
| >cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0045 Score=62.73 Aligned_cols=100 Identities=18% Similarity=0.194 Sum_probs=61.3
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCC--eEEEEeCChHHHHH----HHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecC
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDHGF--TVVAYNRTTAKVDS----FLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVK 77 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~G~--~V~v~dr~~~~~~~----l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp 77 (490)
|||+|||+ |.+|..+|..|+..|. ++.++|++ +++. +.. .....++..+....++.+.++.+|+|+++.-
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~--~a~g~alDL~~-~~~~~~i~~~~~~~~~y~~~~daDivvitaG 77 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV--NTPGVAADLSH-INTPAKVTGYLGPEELKKALKGADVVVIPAG 77 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC--ccceeehHhHh-CCCcceEEEecCCCchHHhcCCCCEEEEeCC
Confidence 58999999 9999999999998884 79999998 2221 111 1111234322011122233445999998874
Q ss_pred CCc---------------hHHHHHHhhcccCCCCCEEEcCCCCChHHH
Q psy9637 78 AGS---------------AVDDFIDKLVPLLEKGDIIIDGGNSEYQDT 110 (490)
Q Consensus 78 ~~~---------------~v~~vl~~l~~~l~~g~iiId~s~~~~~~~ 110 (490)
.+. .++++.+.+.++ .|+.+||..+| |-++
T Consensus 78 ~~~k~g~tR~dll~~N~~i~~~i~~~i~~~-~p~a~vivvtN--PvDv 122 (310)
T cd01337 78 VPRKPGMTRDDLFNINAGIVRDLATAVAKA-CPKALILIISN--PVNS 122 (310)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEccC--chhh
Confidence 421 123333455555 57889999988 4444
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK12548 shikimate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.0071 Score=60.74 Aligned_cols=118 Identities=12% Similarity=0.121 Sum_probs=70.8
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCe-EEEEeCCh---HHHHHHHHcccC-CC--Ceec--cCCHHHHHhhCCCCcEEEEe
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFT-VVAYNRTT---AKVDSFLANEAK-GT--NIIG--AHSLEELVKNLKKPRRVMML 75 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~-V~v~dr~~---~~~~~l~~~g~~-~~--~i~~--~~s~~e~v~~l~~~dvIil~ 75 (490)
+++.|+|.|-+|++++..|++.|++ |+++||++ ++.+++.+.-.. .. .+.. .++.+++.+.++.+|+||-+
T Consensus 127 k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~DilINa 206 (289)
T PRK12548 127 KKLTVIGAGGAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKAEIASSDILVNA 206 (289)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHhhhccCCEEEEe
Confidence 4688999999999999999999996 99999997 666665442110 00 1111 12222333333448999999
Q ss_pred cCCCchHHHHHHhh--cccCCCCCEEEcCCCCChHHHHHHHHHHHHccccc
Q psy9637 76 VKAGSAVDDFIDKL--VPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLY 124 (490)
Q Consensus 76 vp~~~~v~~vl~~l--~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ 124 (490)
+|.+-.-..--..+ ...+.++.+|+|.--.. ..| ...+..+++|...
T Consensus 207 Tp~Gm~~~~~~~~~~~~~~l~~~~~v~D~vY~P-~~T-~ll~~A~~~G~~~ 255 (289)
T PRK12548 207 TLVGMKPNDGETNIKDTSVFRKDLVVADTVYNP-KKT-KLLEDAEAAGCKT 255 (289)
T ss_pred CCCCCCCCCCCCCCCcHHhcCCCCEEEEecCCC-CCC-HHHHHHHHCCCee
Confidence 98763210000001 12467788999996533 332 3344555666533
|
|
| >PLN02602 lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.011 Score=60.99 Aligned_cols=101 Identities=11% Similarity=0.164 Sum_probs=63.6
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC--eEEEEeCChHHHHHHHHcccC------CCCeeccCCHHHHHhhCCCCcEEEEec
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGF--TVVAYNRTTAKVDSFLANEAK------GTNIIGAHSLEELVKNLKKPRRVMMLV 76 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~g~~------~~~i~~~~s~~e~v~~l~~~dvIil~v 76 (490)
+||+|||+|.+|..+|..|+..|. ++.++|+++++++.....-.. ..++....++++ ++ ++|+||++.
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~dy~~-~~---daDiVVitA 113 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTDYAV-TA---GSDLCIVTA 113 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCCHHH-hC---CCCEEEECC
Confidence 599999999999999999998886 799999998766543321100 123333345555 33 389999985
Q ss_pred CCC----ch-----------HHHHHHhhcccCCCCCEEEcCCCCChHHHHH
Q psy9637 77 KAG----SA-----------VDDFIDKLVPLLEKGDIIIDGGNSEYQDTDR 112 (490)
Q Consensus 77 p~~----~~-----------v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~ 112 (490)
-.. .. ++++...+..+ .++.++|..+| |.+...
T Consensus 114 G~~~k~g~tR~dll~~N~~I~~~i~~~I~~~-~p~~ivivvtN--Pvdv~t 161 (350)
T PLN02602 114 GARQIPGESRLNLLQRNVALFRKIIPELAKY-SPDTILLIVSN--PVDVLT 161 (350)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEecC--chHHHH
Confidence 331 11 22333444443 46678888886 444443
|
|
| >COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0098 Score=62.92 Aligned_cols=124 Identities=19% Similarity=0.122 Sum_probs=74.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHH----HHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEec--C
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAK----VDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLV--K 77 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~----~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~v--p 77 (490)
++||.|+|+|.-|.++++.|.+.|++|+++|.++.. ...+...+.. +..-..+.+. +..+|+|+.+= |
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~~~~~~~~~~~~~i~---~~~g~~~~~~---~~~~d~vV~SPGi~ 80 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAPEGLAAQPLLLEGIE---VELGSHDDED---LAEFDLVVKSPGIP 80 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCccchhhhhhhccCce---eecCccchhc---cccCCEEEECCCCC
Confidence 578999999999999999999999999999966554 1111122211 1111111122 23378888652 2
Q ss_pred CCch-HHHHHH---------hhcccC--CCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCCCc
Q psy9637 78 AGSA-VDDFID---------KLVPLL--EKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGGE 133 (490)
Q Consensus 78 ~~~~-v~~vl~---------~l~~~l--~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg~ 133 (490)
...+ ++.... +|.-.. ++.-+-|-++|+...+|.-+...++..|....-++-.|.|
T Consensus 81 ~~~p~v~~A~~~gi~i~~dieL~~r~~~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~lgGNIG~p 148 (448)
T COG0771 81 PTHPLVEAAKAAGIEIIGDIELFYRLSGEAPIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGNIGTP 148 (448)
T ss_pred CCCHHHHHHHHcCCcEEeHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHHhcCCCceeccccCcc
Confidence 2222 332221 222222 2335667778888777777778888888766555555544
|
|
| >PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.017 Score=61.87 Aligned_cols=65 Identities=12% Similarity=0.207 Sum_probs=44.8
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChH-----HHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEe
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTA-----KVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMML 75 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~-----~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~ 75 (490)
++|+|+|+|.-|.++|+.|.+.|++|+++|+++. ..+.+.+.|.. +..-....+.+.. +|+||.+
T Consensus 15 ~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~---~~~~~~~~~~~~~---~dlVV~S 84 (458)
T PRK01710 15 KKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSEEELGEVSNELKELGVK---LVLGENYLDKLDG---FDVIFKT 84 (458)
T ss_pred CeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCCccchHHHHHHHhCCCE---EEeCCCChHHhcc---CCEEEEC
Confidence 5899999999999999999999999999998752 12344443321 2112222233333 8988877
|
|
| >PRK14027 quinate/shikimate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.006 Score=61.06 Aligned_cols=116 Identities=16% Similarity=0.146 Sum_probs=71.4
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHcccC--CCCeeccCCHHHHHhhCCCCcEEEEecCCCch
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGF-TVVAYNRTTAKVDSFLANEAK--GTNIIGAHSLEELVKNLKKPRRVMMLVKAGSA 81 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~g~~--~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~ 81 (490)
+++.|+|.|-.+++++..|++.|. +|+++||++++.+.+.+.... +.......+..+....++.+|+||-++|.+-.
T Consensus 128 k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~~~divINaTp~Gm~ 207 (283)
T PRK14027 128 DSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNATPMGMP 207 (283)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhccCcceEEecCHhHHHHHHhhcCEEEEcCCCCCC
Confidence 479999999999999999999996 799999999999988764211 10001112222111122348999999987632
Q ss_pred HH-H-HHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccc
Q psy9637 82 VD-D-FIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLY 124 (490)
Q Consensus 82 v~-~-vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ 124 (490)
-. . -+. ...+.++.+++|.--.. ..| ...+..+++|...
T Consensus 208 ~~~~~~~~--~~~l~~~~~v~D~vY~P-~~T-~ll~~A~~~G~~~ 248 (283)
T PRK14027 208 AHPGTAFD--VSCLTKDHWVGDVVYMP-IET-ELLKAARALGCET 248 (283)
T ss_pred CCCCCCCC--HHHcCCCcEEEEcccCC-CCC-HHHHHHHHCCCEE
Confidence 11 0 010 12356778999986533 332 2334555666543
|
|
| >PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.0024 Score=56.46 Aligned_cols=121 Identities=16% Similarity=0.259 Sum_probs=72.1
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHccc-CCCCe--eccCCHHHHHhhCCCCcEEEEecCCCc
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGF-TVVAYNRTTAKVDSFLANEA-KGTNI--IGAHSLEELVKNLKKPRRVMMLVKAGS 80 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~g~-~~~~i--~~~~s~~e~v~~l~~~dvIil~vp~~~ 80 (490)
.||.|+|+|.+|..++.+|++.|. +++++|.+.=....+..... ....+ .-+...++.+.++ .|++=+.+.+..
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~-np~~~v~~~~~~- 80 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEI-NPDVEVEAIPEK- 80 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHH-STTSEEEEEESH-
T ss_pred CEEEEECcCHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHh-cCceeeeeeecc-
Confidence 589999999999999999999998 79999986433222221100 00000 0122233333322 245555566553
Q ss_pred hHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCC
Q psy9637 81 AVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSG 131 (490)
Q Consensus 81 ~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsG 131 (490)
..++.+.++. ..-++||++... +.....+.+.+.+.++.|+++.+.|
T Consensus 81 ~~~~~~~~~~---~~~d~vi~~~d~-~~~~~~l~~~~~~~~~p~i~~~~~g 127 (135)
T PF00899_consen 81 IDEENIEELL---KDYDIVIDCVDS-LAARLLLNEICREYGIPFIDAGVNG 127 (135)
T ss_dssp CSHHHHHHHH---HTSSEEEEESSS-HHHHHHHHHHHHHTT-EEEEEEEET
T ss_pred cccccccccc---cCCCEEEEecCC-HHHHHHHHHHHHHcCCCEEEEEeec
Confidence 2233344443 345899998765 4555556678888999999998764
|
Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A .... |
| >PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.004 Score=63.85 Aligned_cols=97 Identities=15% Similarity=0.223 Sum_probs=59.2
Q ss_pred CCCCCcEEEEcc-cHHHHHHHHHHHHCCCeEEE--EeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecC
Q psy9637 1 MAAKGDIGLIGL-AVMGQNLILNMNDHGFTVVA--YNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVK 77 (490)
Q Consensus 1 M~~~~~IgiIGl-G~MG~~lA~~L~~~G~~V~v--~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp 77 (490)
|+.|++|+|+|. |..|..+.+.|.+++|++.- +=.+.+...+..........+... +..++ + ..|++|+++|
T Consensus 1 m~~~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~~~aG~~l~~~~~~l~~~~~-~~~~~-~---~vD~vFla~p 75 (336)
T PRK05671 1 MSQPLDIAVVGATGTVGEALVQILEERDFPVGTLHLLASSESAGHSVPFAGKNLRVREV-DSFDF-S---QVQLAFFAAG 75 (336)
T ss_pred CCCCCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECcccCCCeeccCCcceEEeeC-ChHHh-c---CCCEEEEcCC
Confidence 777789999996 99999999999988885442 222322222111111111111111 22233 3 3899999999
Q ss_pred CCchHHHHHHhhcccCCCCCEEEcCCCCC
Q psy9637 78 AGSAVDDFIDKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 78 ~~~~v~~vl~~l~~~l~~g~iiId~s~~~ 106 (490)
.+ ....++..+. ..|..|||.|..+
T Consensus 76 ~~-~s~~~v~~~~---~~G~~VIDlS~~f 100 (336)
T PRK05671 76 AA-VSRSFAEKAR---AAGCSVIDLSGAL 100 (336)
T ss_pred HH-HHHHHHHHHH---HCCCeEEECchhh
Confidence 75 4555555443 4688999999754
|
|
| >PRK12749 quinate/shikimate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.008 Score=60.35 Aligned_cols=118 Identities=14% Similarity=0.153 Sum_probs=72.2
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-eEEEEeCCh---HHHHHHHHcccCC--CCeeccCCHHH---HHhhCCCCcEEEEe
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGF-TVVAYNRTT---AKVDSFLANEAKG--TNIIGAHSLEE---LVKNLKKPRRVMML 75 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~---~~~~~l~~~g~~~--~~i~~~~s~~e---~v~~l~~~dvIil~ 75 (490)
+++.|+|.|-.+++++..|+..|. +|+++||++ ++.+.+.+..... ..+. ..++++ +.+.+..+|+||-+
T Consensus 125 k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~~~~ka~~la~~~~~~~~~~~~-~~~~~~~~~l~~~~~~aDivINa 203 (288)
T PRK12749 125 KTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVT-VTDLADQQAFAEALASADILTNG 203 (288)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCccHHHHHHHHHHHhhhccCceEE-EechhhhhhhhhhcccCCEEEEC
Confidence 479999999999999999999886 899999994 5777776542110 0111 222321 22234458999999
Q ss_pred cCCCchH--HHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccccc
Q psy9637 76 VKAGSAV--DDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYV 125 (490)
Q Consensus 76 vp~~~~v--~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~l 125 (490)
+|.+-.- +...-.-...++++.+|+|.--. |..| ...+..+++|...+
T Consensus 204 Tp~Gm~~~~~~~~~~~~~~l~~~~~v~D~vY~-P~~T-~ll~~A~~~G~~~~ 253 (288)
T PRK12749 204 TKVGMKPLENESLVNDISLLHPGLLVTECVYN-PHMT-KLLQQAQQAGCKTI 253 (288)
T ss_pred CCCCCCCCCCCCCCCcHHHCCCCCEEEEecCC-CccC-HHHHHHHHCCCeEE
Confidence 9876321 11000001235678899998643 3333 34455666775443
|
|
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.015 Score=59.66 Aligned_cols=121 Identities=12% Similarity=0.189 Sum_probs=70.6
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHcccC-----CCCeeccCCHHHHHhhCCCCcEEEEecCC
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGF-TVVAYNRTTAKVDSFLANEAK-----GTNIIGAHSLEELVKNLKKPRRVMMLVKA 78 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~g~~-----~~~i~~~~s~~e~v~~l~~~dvIil~vp~ 78 (490)
.+|.|||+|.+|..+|.+|++.|+ +++++|++.-....+.....- +....-+....+.+..+ .+++-+..++.
T Consensus 25 ~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~i-np~v~i~~~~~ 103 (338)
T PRK12475 25 KHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKI-NSEVEIVPVVT 103 (338)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHH-CCCcEEEEEec
Confidence 589999999999999999999998 899999875222111110000 00000112222223322 25666666654
Q ss_pred CchHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCC
Q psy9637 79 GSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSG 131 (490)
Q Consensus 79 ~~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsG 131 (490)
. ...+.++++ +..-|+|||++.. +.....+.+.+.+.++.++.+.+.|
T Consensus 104 ~-~~~~~~~~~---~~~~DlVid~~D~-~~~r~~in~~~~~~~ip~i~~~~~g 151 (338)
T PRK12475 104 D-VTVEELEEL---VKEVDLIIDATDN-FDTRLLINDLSQKYNIPWIYGGCVG 151 (338)
T ss_pred c-CCHHHHHHH---hcCCCEEEEcCCC-HHHHHHHHHHHHHcCCCEEEEEecc
Confidence 3 222333443 4456899999753 4443444466677788887776544
|
|
| >PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.063 Score=60.34 Aligned_cols=99 Identities=15% Similarity=0.308 Sum_probs=71.4
Q ss_pred EEEecCCCchHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccccccc-CCCCCcccc--------ccCC-c
Q psy9637 72 VMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGC-GVSGGEDGA--------RYGP-S 141 (490)
Q Consensus 72 Iil~vp~~~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~-~vsGg~~~a--------~~G~-~ 141 (490)
||+|+|. ..+.+++.++.++++++.+|.|.+++.........+.+......|+.. |+.|.+..- ..|. .
T Consensus 1 vila~Pv-~~~~~~~~~~~~~~~~~~~vtDv~SvK~~i~~~~~~~l~~~~~~fvg~HPMaG~e~~G~~~a~~~Lf~~~~~ 79 (673)
T PRK11861 1 VLLAAPV-AQTGPLLARIAPFLDASTIVTDAGSTKSDVVAAARAALGARIGQFVPGHPIAGRESSGVDAALADLYVGRNV 79 (673)
T ss_pred CEEEcCH-HHHHHHHHHHhhhCCCCcEEEecCcccHHHHHHHHHhccccCCeEEecCCcCcCcchhhhhhChhHhCCCeE
Confidence 6899999 488999999999999999999999987444343333332222468877 677665322 3555 4
Q ss_pred cCC---CCCcchHHHHHHHHHhhCCceeeCCCC
Q psy9637 142 LMP---GGNPAAWPALKPIFQKLNPSFETSAPT 171 (490)
Q Consensus 142 im~---GG~~~a~~~v~~ll~~l~~~~~~~g~~ 171 (490)
+++ ..++++++.++.+++.+|++++.+.+.
T Consensus 80 il~p~~~~~~~~~~~~~~l~~~~Ga~~~~~~~~ 112 (673)
T PRK11861 80 VLCALPENAPDALARVEAMWRAARADVRAMSAE 112 (673)
T ss_pred EEecCCCCCHHHHHHHHHHHHHcCCEEEECCHH
Confidence 444 235678999999999999998887663
|
|
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.009 Score=56.77 Aligned_cols=121 Identities=14% Similarity=0.236 Sum_probs=70.9
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHccc-CCCCe--eccCCHHHHHhhCCCCcEEEEecCCCc
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGF-TVVAYNRTTAKVDSFLANEA-KGTNI--IGAHSLEELVKNLKKPRRVMMLVKAGS 80 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~g~-~~~~i--~~~~s~~e~v~~l~~~dvIil~vp~~~ 80 (490)
.+|.|||+|.+|..++.+|++.|. +++++|.+.-....+..... ....+ .-+....+.+.++ .+++-+...+..
T Consensus 22 ~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~-np~v~i~~~~~~- 99 (202)
T TIGR02356 22 SHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLREL-NSDIQVTALKER- 99 (202)
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHh-CCCCEEEEehhc-
Confidence 589999999999999999999997 89999987432222221100 00000 0112222223322 256666655543
Q ss_pred hHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCC
Q psy9637 81 AVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSG 131 (490)
Q Consensus 81 ~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsG 131 (490)
...+-+. ..++.-|+||++..+ +.......+.+.+.++.|+++.+.|
T Consensus 100 i~~~~~~---~~~~~~D~Vi~~~d~-~~~r~~l~~~~~~~~ip~i~~~~~g 146 (202)
T TIGR02356 100 VTAENLE---LLINNVDLVLDCTDN-FATRYLINDACVALGTPLISAAVVG 146 (202)
T ss_pred CCHHHHH---HHHhCCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEEecc
Confidence 2222222 234456899998754 3444444477778899888887654
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.019 Score=51.34 Aligned_cols=74 Identities=16% Similarity=0.249 Sum_probs=52.5
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
++|.|+|- ...|.+++..|.+.|..|++++++ +.++++.++. +|+|+.+++....++
T Consensus 29 k~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~-------------------t~~l~~~v~~---ADIVvsAtg~~~~i~ 86 (140)
T cd05212 29 KKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWK-------------------TIQLQSKVHD---ADVVVVGSPKPEKVP 86 (140)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEeCCC-------------------CcCHHHHHhh---CCEEEEecCCCCccC
Confidence 46777774 566777777777777777777643 2256667776 999999998753221
Q ss_pred HHHHhhcccCCCCCEEEcCCCCC
Q psy9637 84 DFIDKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 84 ~vl~~l~~~l~~g~iiId~s~~~ 106 (490)
...+++|.+|+|.+...
T Consensus 87 ------~~~ikpGa~Vidvg~~~ 103 (140)
T cd05212 87 ------TEWIKPGATVINCSPTK 103 (140)
T ss_pred ------HHHcCCCCEEEEcCCCc
Confidence 13578999999998754
|
NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional |
| >PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.0067 Score=60.69 Aligned_cols=73 Identities=19% Similarity=0.345 Sum_probs=55.4
Q ss_pred CcEEEEcccH-HHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 5 GDIGLIGLAV-MGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 5 ~~IgiIGlG~-MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
+++.|||.|. .|.+++..|.+.|.+|+++++.. .++.+.+.. +|+||.+++.+..+.
T Consensus 160 k~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t-------------------~~L~~~~~~---aDIvI~AtG~~~~v~ 217 (283)
T PRK14192 160 KHAVVVGRSAILGKPMAMMLLNANATVTICHSRT-------------------QNLPELVKQ---ADIIVGAVGKPELIK 217 (283)
T ss_pred CEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCc-------------------hhHHHHhcc---CCEEEEccCCCCcCC
Confidence 5899999997 99999999999999999999732 233333344 899999996543222
Q ss_pred HHHHhhcccCCCCCEEEcCCCC
Q psy9637 84 DFIDKLVPLLEKGDIIIDGGNS 105 (490)
Q Consensus 84 ~vl~~l~~~l~~g~iiId~s~~ 105 (490)
. ..+++|.+|+|.+..
T Consensus 218 ---~---~~lk~gavViDvg~n 233 (283)
T PRK14192 218 ---K---DWIKQGAVVVDAGFH 233 (283)
T ss_pred ---H---HHcCCCCEEEEEEEe
Confidence 1 346899999999864
|
|
| >PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.012 Score=58.64 Aligned_cols=73 Identities=12% Similarity=0.242 Sum_probs=57.5
Q ss_pred CcEEEEcccH-HHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 5 GDIGLIGLAV-MGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 5 ~~IgiIGlG~-MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
+++.|||-+. +|.++|..|.+.|..|++++.. +.++.+.+.+ +|+||.++.-+..+.
T Consensus 165 k~vvViGrs~iVGkPla~lL~~~~atVtv~hs~-------------------T~~l~~~~~~---ADIvv~AvG~p~~i~ 222 (287)
T PRK14176 165 KNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVF-------------------TDDLKKYTLD---ADILVVATGVKHLIK 222 (287)
T ss_pred CEEEEECCCcccHHHHHHHHHHCCCEEEEEecc-------------------CCCHHHHHhh---CCEEEEccCCccccC
Confidence 5899999988 9999999999999999999842 3456666666 999999886643221
Q ss_pred HHHHhhcccCCCCCEEEcCCCC
Q psy9637 84 DFIDKLVPLLEKGDIIIDGGNS 105 (490)
Q Consensus 84 ~vl~~l~~~l~~g~iiId~s~~ 105 (490)
. ..+++|.+|||.|..
T Consensus 223 ---~---~~vk~gavVIDvGin 238 (287)
T PRK14176 223 ---A---DMVKEGAVIFDVGIT 238 (287)
T ss_pred ---H---HHcCCCcEEEEeccc
Confidence 1 257799999999974
|
|
| >PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.018 Score=60.80 Aligned_cols=39 Identities=18% Similarity=0.407 Sum_probs=34.2
Q ss_pred CCCCCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHH
Q psy9637 1 MAAKGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKV 40 (490)
Q Consensus 1 M~~~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~ 40 (490)
|.. .+|.|||+|.+|.++|+.|.+.|++|+++|+++...
T Consensus 1 ~~~-~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~~~ 39 (418)
T PRK00683 1 MGL-QRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLEAL 39 (418)
T ss_pred CCC-CeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCcccc
Confidence 543 589999999999999999999999999999887643
|
|
| >PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF) | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.0085 Score=54.71 Aligned_cols=74 Identities=19% Similarity=0.361 Sum_probs=51.2
Q ss_pred CcEEEEccc-HHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 5 GDIGLIGLA-VMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 5 ~~IgiIGlG-~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
+++.|||-+ .+|.+++..|.++|..|++++.. +.++++.++. +|+||.++....-++
T Consensus 37 k~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~-------------------T~~l~~~~~~---ADIVVsa~G~~~~i~ 94 (160)
T PF02882_consen 37 KKVVVVGRSNIVGKPLAMLLLNKGATVTICHSK-------------------TKNLQEITRR---ADIVVSAVGKPNLIK 94 (160)
T ss_dssp -EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TT-------------------SSSHHHHHTT---SSEEEE-SSSTT-B-
T ss_pred CEEEEECCcCCCChHHHHHHHhCCCeEEeccCC-------------------CCcccceeee---ccEEeeeeccccccc
Confidence 589999987 59999999999999999998865 2456666666 999999997753321
Q ss_pred HHHHhhcccCCCCCEEEcCCCCC
Q psy9637 84 DFIDKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 84 ~vl~~l~~~l~~g~iiId~s~~~ 106 (490)
...+++|.+|||+|...
T Consensus 95 ------~~~ik~gavVIDvG~~~ 111 (160)
T PF02882_consen 95 ------ADWIKPGAVVIDVGINY 111 (160)
T ss_dssp ------GGGS-TTEEEEE--CEE
T ss_pred ------cccccCCcEEEecCCcc
Confidence 12578999999999854
|
Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A .... |
| >TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.0092 Score=60.57 Aligned_cols=101 Identities=17% Similarity=0.188 Sum_probs=61.1
Q ss_pred cEEEEcc-cHHHHHHHHHHHHCCC--eEEEEeCChHHHH--HHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCc
Q psy9637 6 DIGLIGL-AVMGQNLILNMNDHGF--TVVAYNRTTAKVD--SFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGS 80 (490)
Q Consensus 6 ~IgiIGl-G~MG~~lA~~L~~~G~--~V~v~dr~~~~~~--~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~ 80 (490)
||+|||+ |.+|..+|..|+..++ ++.++|+++...+ .+.. .....++..+.+..+..+.++++|+|+++.-.+.
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~g~a~DL~~-~~~~~~i~~~~~~~~~~~~~~daDivvitaG~~~ 79 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADLSH-IPTAASVKGFSGEEGLENALKGADVVVIPAGVPR 79 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCcEEEchhhc-CCcCceEEEecCCCchHHHcCCCCEEEEeCCCCC
Confidence 6999999 9999999999998886 7999999862111 1111 1111233321111112233444999998874421
Q ss_pred ---------------hHHHHHHhhcccCCCCCEEEcCCCCChHHH
Q psy9637 81 ---------------AVDDFIDKLVPLLEKGDIIIDGGNSEYQDT 110 (490)
Q Consensus 81 ---------------~v~~vl~~l~~~l~~g~iiId~s~~~~~~~ 110 (490)
.++++...+.++ .|+.+||..|| |-++
T Consensus 80 ~~g~~R~dll~~N~~I~~~i~~~i~~~-~p~~iiivvsN--PvDv 121 (312)
T TIGR01772 80 KPGMTRDDLFNVNAGIVKDLVAAVAES-CPKAMILVITN--PVNS 121 (312)
T ss_pred CCCccHHHHHHHhHHHHHHHHHHHHHh-CCCeEEEEecC--chhh
Confidence 133344555555 57888888887 4443
|
Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases. |
| >cd01487 E1_ThiF_like E1_ThiF_like | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.0082 Score=55.68 Aligned_cols=120 Identities=12% Similarity=0.180 Sum_probs=64.6
Q ss_pred cEEEEcccHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHcccCCCCe--eccCCHHHHHhhCCCCcEEEEecCCCchH
Q psy9637 6 DIGLIGLAVMGQNLILNMNDHGF-TVVAYNRTTAKVDSFLANEAKGTNI--IGAHSLEELVKNLKKPRRVMMLVKAGSAV 82 (490)
Q Consensus 6 ~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~g~~~~~i--~~~~s~~e~v~~l~~~dvIil~vp~~~~v 82 (490)
||.|||+|.||..++.+|++.|. +++++|.+.-....+.........+ .-+......++++ .+++=+...+.. ..
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~l-np~v~i~~~~~~-~~ 78 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREI-NPFVKIEAINIK-ID 78 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHH-CCCCEEEEEEee-cC
Confidence 58999999999999999999998 5999998752111111110000000 0011122222222 144445444432 11
Q ss_pred HHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHc-cccccccCCCC
Q psy9637 83 DDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAK-GLLYVGCGVSG 131 (490)
Q Consensus 83 ~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~-gi~~ld~~vsG 131 (490)
.+-+++ .++.-|+|||+.- .+..-....+.+.++ ++.|+-+.+.+
T Consensus 79 ~~~~~~---~l~~~DlVi~~~d-~~~~r~~i~~~~~~~~~ip~i~~~~~~ 124 (174)
T cd01487 79 ENNLEG---LFGDCDIVVEAFD-NAETKAMLAESLLGNKNKPVVCASGMA 124 (174)
T ss_pred hhhHHH---HhcCCCEEEECCC-CHHHHHHHHHHHHHHCCCCEEEEehhh
Confidence 222222 3445689999954 333333344666665 88877665443
|
Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >PRK14982 acyl-ACP reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.018 Score=58.94 Aligned_cols=110 Identities=20% Similarity=0.325 Sum_probs=72.2
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHC-C-CeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCch
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDH-G-FTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSA 81 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~-G-~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~ 81 (490)
++|.|+|. |.||..+++.|+++ | .++++++|++++...+..+... .. ..++.+.+. .+|+|+.+......
T Consensus 156 k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~-~~---i~~l~~~l~---~aDiVv~~ts~~~~ 228 (340)
T PRK14982 156 ATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGG-GK---ILSLEEALP---EADIVVWVASMPKG 228 (340)
T ss_pred CEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhcc-cc---HHhHHHHHc---cCCEEEECCcCCcC
Confidence 58999998 89999999999854 5 5899999999888887654321 11 224444444 49999988765432
Q ss_pred HHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCC
Q psy9637 82 VDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVS 130 (490)
Q Consensus 82 v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vs 130 (490)
+ +++. ..+.++.++||.+- |.+..... ...|+..+|.++.
T Consensus 229 ~--~I~~--~~l~~~~~viDiAv--PRDVd~~v---~~~~V~v~~gG~V 268 (340)
T PRK14982 229 V--EIDP--ETLKKPCLMIDGGY--PKNLDTKV---QGPGIHVLKGGIV 268 (340)
T ss_pred C--cCCH--HHhCCCeEEEEecC--CCCCCccc---CCCCEEEEeCCcc
Confidence 1 1110 13368899999974 44443222 2256777776653
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.019 Score=58.54 Aligned_cols=92 Identities=17% Similarity=0.239 Sum_probs=58.6
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeecc--CCHHHHHhhCCCCcEEEEecCCCchH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGA--HSLEELVKNLKKPRRVMMLVKAGSAV 82 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~--~s~~e~v~~l~~~dvIil~vp~~~~v 82 (490)
.+|+|+|+|-+|..-.+.....|.+|+++||++++.+.+.+.|+. .+... .+..+.+.. ..|+||.+++ ...+
T Consensus 168 ~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd--~~i~~~~~~~~~~~~~--~~d~ii~tv~-~~~~ 242 (339)
T COG1064 168 KWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGAD--HVINSSDSDALEAVKE--IADAIIDTVG-PATL 242 (339)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCc--EEEEcCCchhhHHhHh--hCcEEEECCC-hhhH
Confidence 579999999666544444444899999999999999988887764 11111 112222222 1788998888 5555
Q ss_pred HHHHHhhcccCCCCCEEEcCCCC
Q psy9637 83 DDFIDKLVPLLEKGDIIIDGGNS 105 (490)
Q Consensus 83 ~~vl~~l~~~l~~g~iiId~s~~ 105 (490)
...++ .|+++-.++-.|..
T Consensus 243 ~~~l~----~l~~~G~~v~vG~~ 261 (339)
T COG1064 243 EPSLK----ALRRGGTLVLVGLP 261 (339)
T ss_pred HHHHH----HHhcCCEEEEECCC
Confidence 54444 44555555555553
|
|
| >TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.01 Score=63.38 Aligned_cols=107 Identities=12% Similarity=0.153 Sum_probs=72.0
Q ss_pred CcEEEEcc----cHHHHHHHHHHHHCCC--eEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCC
Q psy9637 5 GDIGLIGL----AVMGQNLILNMNDHGF--TVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKA 78 (490)
Q Consensus 5 ~~IgiIGl----G~MG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~ 78 (490)
.+|+|||. |++|..+.++|.+.|| +|+..|+....+ .| +..+.+++|+-.. +|++++++|.
T Consensus 8 ~siavvGaS~~~~~~g~~~~~~l~~~gf~g~v~~Vnp~~~~i-----~G-----~~~~~sl~~lp~~---~Dlavi~vp~ 74 (447)
T TIGR02717 8 KSVAVIGASRDPGKVGYAIMKNLIEGGYKGKIYPVNPKAGEI-----LG-----VKAYPSVLEIPDP---VDLAVIVVPA 74 (447)
T ss_pred CEEEEEccCCCCCchHHHHHHHHHhCCCCCcEEEECCCCCcc-----CC-----ccccCCHHHCCCC---CCEEEEecCH
Confidence 57999999 8899999999999999 565556543211 12 3357888887654 8999999998
Q ss_pred CchHHHHHHhhcccCCCCCEEEcCCCCChH-------HHHHHHHHHHHcccccccc
Q psy9637 79 GSAVDDFIDKLVPLLEKGDIIIDGGNSEYQ-------DTDRRSKALEAKGLLYVGC 127 (490)
Q Consensus 79 ~~~v~~vl~~l~~~l~~g~iiId~s~~~~~-------~~~~~~~~l~~~gi~~ld~ 127 (490)
. .+.++++++...- -..+||- +....+ ...++.+.+++.|++++..
T Consensus 75 ~-~~~~~l~e~~~~g-v~~~vi~-s~gf~e~g~~g~~~~~~l~~~a~~~girvlGP 127 (447)
T TIGR02717 75 K-YVPQVVEECGEKG-VKGAVVI-TAGFKEVGEEGAELEQELVEIARKYGMRLLGP 127 (447)
T ss_pred H-HHHHHHHHHHhcC-CCEEEEE-CCCccccCcchHHHHHHHHHHHHHcCCEEEec
Confidence 4 7888888776632 2334432 222221 1234446667778887764
|
Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff. |
| >PRK08328 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.024 Score=55.07 Aligned_cols=121 Identities=13% Similarity=0.219 Sum_probs=71.8
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHcccC-CCCee---ccCCHHHHHhhCCCCcEEEEecCCC
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGF-TVVAYNRTTAKVDSFLANEAK-GTNII---GAHSLEELVKNLKKPRRVMMLVKAG 79 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~g~~-~~~i~---~~~s~~e~v~~l~~~dvIil~vp~~ 79 (490)
.+|.|||+|-.|..++.+|++.|. +++++|.+.-....+..+... ...+- .+...++.+..+ .|++.+.+.+..
T Consensus 28 ~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~~-np~v~v~~~~~~ 106 (231)
T PRK08328 28 AKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTPELSNLNRQILHWEEDLGKNPKPLSAKWKLERF-NSDIKIETFVGR 106 (231)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCccChhhhccccccChhhcCchHHHHHHHHHHHHh-CCCCEEEEEecc
Confidence 589999999999999999999996 688998875544444322110 00000 001111112222 267777765543
Q ss_pred chHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCC
Q psy9637 80 SAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSG 131 (490)
Q Consensus 80 ~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsG 131 (490)
..++-++++ ++.-|+|||+.-. +.......+.+.+.++.++.+.+.|
T Consensus 107 -~~~~~~~~~---l~~~D~Vid~~d~-~~~r~~l~~~~~~~~ip~i~g~~~g 153 (231)
T PRK08328 107 -LSEENIDEV---LKGVDVIVDCLDN-FETRYLLDDYAHKKGIPLVHGAVEG 153 (231)
T ss_pred -CCHHHHHHH---HhcCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEeecc
Confidence 222223333 4466999999765 3333333366778899888777654
|
|
| >CHL00194 ycf39 Ycf39; Provisional | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.015 Score=58.90 Aligned_cols=70 Identities=17% Similarity=0.208 Sum_probs=50.9
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeec--cCCHHHHHhhCCCCcEEEEecC
Q psy9637 5 GDIGLIG-LAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIG--AHSLEELVKNLKKPRRVMMLVK 77 (490)
Q Consensus 5 ~~IgiIG-lG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~--~~s~~e~v~~l~~~dvIil~vp 77 (490)
|+|.|+| .|.+|+.++..|.++||+|++.+|++++...+...+.. +.. ..+++.+.+.++.+|+||-++.
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~~~v~---~v~~Dl~d~~~l~~al~g~d~Vi~~~~ 73 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLKEWGAE---LVYGDLSLPETLPPSFKGVTAIIDAST 73 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHhhcCCE---EEECCCCCHHHHHHHHCCCCEEEECCC
Confidence 4799999 59999999999999999999999998765544432221 111 2355555555666899987754
|
|
| >PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.0073 Score=62.98 Aligned_cols=96 Identities=16% Similarity=0.206 Sum_probs=61.0
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHHC-CCeEEEEeCChHHHHHHHHcccC--CCCeeccCCHHHHHhhCCCCcEEEEecCCC
Q psy9637 4 KGDIGLIGL-AVMGQNLILNMNDH-GFTVVAYNRTTAKVDSFLANEAK--GTNIIGAHSLEELVKNLKKPRRVMMLVKAG 79 (490)
Q Consensus 4 ~~~IgiIGl-G~MG~~lA~~L~~~-G~~V~v~dr~~~~~~~l~~~g~~--~~~i~~~~s~~e~v~~l~~~dvIil~vp~~ 79 (490)
++||+|+|. |..|..|.+.|.++ .++|+.+.++..+-+.+...... ...+....+.+.. .++.+|+||+++|++
T Consensus 38 ~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~--~~~~~DvVf~Alp~~ 115 (381)
T PLN02968 38 KKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDA--DFSDVDAVFCCLPHG 115 (381)
T ss_pred ccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchhhCccccCccccceecCCHH--HhcCCCEEEEcCCHH
Confidence 468999996 99999999999988 77999887765443332221110 0011111122211 123489999999995
Q ss_pred chHHHHHHhhcccCCCCCEEEcCCCCC
Q psy9637 80 SAVDDFIDKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 80 ~~v~~vl~~l~~~l~~g~iiId~s~~~ 106 (490)
...+++..+ ..|..|||.|+.+
T Consensus 116 -~s~~i~~~~----~~g~~VIDlSs~f 137 (381)
T PLN02968 116 -TTQEIIKAL----PKDLKIVDLSADF 137 (381)
T ss_pred -HHHHHHHHH----hCCCEEEEcCchh
Confidence 555555543 4688999999754
|
|
| >cd05290 LDH_3 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.021 Score=57.87 Aligned_cols=101 Identities=15% Similarity=0.169 Sum_probs=61.7
Q ss_pred cEEEEcccHHHHHHHHHHHHCCC--eEEEEeCChHHHHHHHHc----ccC-C-CCeec-cCCHHHHHhhCCCCcEEEEec
Q psy9637 6 DIGLIGLAVMGQNLILNMNDHGF--TVVAYNRTTAKVDSFLAN----EAK-G-TNIIG-AHSLEELVKNLKKPRRVMMLV 76 (490)
Q Consensus 6 ~IgiIGlG~MG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~----g~~-~-~~i~~-~~s~~e~v~~l~~~dvIil~v 76 (490)
||+|||+|.+|..+|..|+.++. ++.++|+++++++..... ..- . .++.. ..+.+++ +++|+|+++.
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~~----~~aDivvita 76 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDDC----ADADIIVITA 76 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCHHHh----CCCCEEEECC
Confidence 69999999999999999998886 799999987765533221 110 0 11211 3444443 3489999987
Q ss_pred CC----Cch-------------HHHHHHhhcccCCCCCEEEcCCCCChHHHHHH
Q psy9637 77 KA----GSA-------------VDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRR 113 (490)
Q Consensus 77 p~----~~~-------------v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~ 113 (490)
-. +.. ++++...+..+- ++.++|-.+| |-++...
T Consensus 77 G~~~kpg~tr~R~dll~~N~~I~~~i~~~i~~~~-p~~i~ivvsN--PvDv~t~ 127 (307)
T cd05290 77 GPSIDPGNTDDRLDLAQTNAKIIREIMGNITKVT-KEAVIILITN--PLDIAVY 127 (307)
T ss_pred CCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEecC--cHHHHHH
Confidence 43 211 112223444443 6678888887 4454433
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.019 Score=59.03 Aligned_cols=122 Identities=13% Similarity=0.202 Sum_probs=71.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHcccC-----CCCeeccCCHHHHHhhCCCCcEEEEecC
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGF-TVVAYNRTTAKVDSFLANEAK-----GTNIIGAHSLEELVKNLKKPRRVMMLVK 77 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~g~~-----~~~i~~~~s~~e~v~~l~~~dvIil~vp 77 (490)
..+|.|||+|.+|..+|.+|++.|. +++++|.+.-....+...... +....-+....+.+.++ .+++-+....
T Consensus 24 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~i-np~v~v~~~~ 102 (339)
T PRK07688 24 EKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEI-NSDVRVEAIV 102 (339)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHH-CCCcEEEEEe
Confidence 3589999999999999999999998 899999875333333221100 00000111222333322 2566555554
Q ss_pred CCchHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCC
Q psy9637 78 AGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSG 131 (490)
Q Consensus 78 ~~~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsG 131 (490)
.. ...+-+.++ +..-|+|||++.. +.....+.+.+.+.++.++.+.+.|
T Consensus 103 ~~-~~~~~~~~~---~~~~DlVid~~Dn-~~~r~~ln~~~~~~~iP~i~~~~~g 151 (339)
T PRK07688 103 QD-VTAEELEEL---VTGVDLIIDATDN-FETRFIVNDAAQKYGIPWIYGACVG 151 (339)
T ss_pred cc-CCHHHHHHH---HcCCCEEEEcCCC-HHHHHHHHHHHHHhCCCEEEEeeee
Confidence 43 222222333 4456999999764 4444444477777888888776544
|
|
| >PTZ00325 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.016 Score=58.98 Aligned_cols=101 Identities=16% Similarity=0.142 Sum_probs=59.5
Q ss_pred CCCcEEEEcc-cHHHHHHHHHHHHCC--CeEEEEeCChHHHH--HHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecC
Q psy9637 3 AKGDIGLIGL-AVMGQNLILNMNDHG--FTVVAYNRTTAKVD--SFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVK 77 (490)
Q Consensus 3 ~~~~IgiIGl-G~MG~~lA~~L~~~G--~~V~v~dr~~~~~~--~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp 77 (490)
.|.||+|||+ |.+|..+|..|+..+ .++.++|++....+ .+..... ...+...+++.+..+.++.+|+|+++.-
T Consensus 7 ~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~Dl~~~~~-~~~v~~~td~~~~~~~l~gaDvVVitaG 85 (321)
T PTZ00325 7 KMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDT-PAKVTGYADGELWEKALRGADLVLICAG 85 (321)
T ss_pred CCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccccchhhcCc-CceEEEecCCCchHHHhCCCCEEEECCC
Confidence 4679999999 999999999999655 58999999432221 1221111 1123333343332334445999998874
Q ss_pred CCch---------------HHHHHHhhcccCCCCCEEEcCCCC
Q psy9637 78 AGSA---------------VDDFIDKLVPLLEKGDIIIDGGNS 105 (490)
Q Consensus 78 ~~~~---------------v~~vl~~l~~~l~~g~iiId~s~~ 105 (490)
.... ++++++.+.++ .+..+|+-.||.
T Consensus 86 ~~~~~~~tR~dll~~N~~i~~~i~~~i~~~-~~~~iviv~SNP 127 (321)
T PTZ00325 86 VPRKPGMTRDDLFNTNAPIVRDLVAAVASS-APKAIVGIVSNP 127 (321)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEecCc
Confidence 4221 12223334333 456677777774
|
|
| >PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.015 Score=58.01 Aligned_cols=74 Identities=22% Similarity=0.350 Sum_probs=57.3
Q ss_pred CcEEEEccc-HHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 5 GDIGLIGLA-VMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 5 ~~IgiIGlG-~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
++|.|||-| .+|.++|..|.++|..|++++.. +.++.+.+.. +|+|+.++....-+.
T Consensus 158 k~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~-------------------t~~l~~~~~~---ADIvV~AvG~p~~i~ 215 (285)
T PRK14191 158 KDVVIIGASNIVGKPLAMLMLNAGASVSVCHIL-------------------TKDLSFYTQN---ADIVCVGVGKPDLIK 215 (285)
T ss_pred CEEEEECCCchhHHHHHHHHHHCCCEEEEEeCC-------------------cHHHHHHHHh---CCEEEEecCCCCcCC
Confidence 589999999 99999999999999999998642 2234455666 999999997764322
Q ss_pred HHHHhhcccCCCCCEEEcCCCCC
Q psy9637 84 DFIDKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 84 ~vl~~l~~~l~~g~iiId~s~~~ 106 (490)
. ..+++|.+|||.|...
T Consensus 216 ---~---~~vk~GavVIDvGi~~ 232 (285)
T PRK14191 216 ---A---SMVKKGAVVVDIGINR 232 (285)
T ss_pred ---H---HHcCCCcEEEEeeccc
Confidence 1 2457999999998654
|
|
| >PRK06392 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.022 Score=58.16 Aligned_cols=126 Identities=16% Similarity=0.203 Sum_probs=70.4
Q ss_pred CcEEEEcccHHHHHHHHHHHHC--------CCeEE-EEeCChHHH-------HHH---HHcccCCCCeeccC--CHHHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDH--------GFTVV-AYNRTTAKV-------DSF---LANEAKGTNIIGAH--SLEELV 63 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~--------G~~V~-v~dr~~~~~-------~~l---~~~g~~~~~i~~~~--s~~e~v 63 (490)
|+|+|||+|.+|..+++.|.++ +++|+ +.|++.... +.+ .+.+.- .. .... ++.++.
T Consensus 1 mrVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~g~l-~~-~~~~~~~~~~ll 78 (326)
T PRK06392 1 IRISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEKGRL-EE-IDYEKIKFDEIF 78 (326)
T ss_pred CEEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhcCcc-cc-CCCCcCCHHHHh
Confidence 4899999999999999999873 34533 567654221 111 111100 00 0112 566665
Q ss_pred hhCCCCcEEEEecCCCchHHHHHHhhcccCCCCCEEEcCCCCChHH-HHHHHHHHHHccccc-cccCCCCCcc
Q psy9637 64 KNLKKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQD-TDRRSKALEAKGLLY-VGCGVSGGED 134 (490)
Q Consensus 64 ~~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~s~~~~~~-~~~~~~~l~~~gi~~-ld~~vsGg~~ 134 (490)
. ..+|+|+-|.|....-.....-+.+.|+.|.-||-.+...... -.++.+..+++|.+| +.+.|.||.+
T Consensus 79 ~--~~~DVvVE~t~~~~~g~~~~~~~~~aL~~G~hVVTaNKgalA~~~~eL~~lA~~~g~~~~~eatV~~g~P 149 (326)
T PRK06392 79 E--IKPDVIVDVTPASKDGIREKNLYINAFEHGIDVVTANKSGLANHWHDIMDSASKNRRIIRYEATVAGGVP 149 (326)
T ss_pred c--CCCCEEEECCCCCCcCchHHHHHHHHHHCCCEEEcCCHHHHHhhHHHHHHHHHHcCCeEEEeeeeeeccc
Confidence 4 2589999999854221223344455677888888776432221 122223444556654 4666666654
|
|
| >TIGR01759 MalateDH-SF1 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.025 Score=57.74 Aligned_cols=104 Identities=11% Similarity=0.136 Sum_probs=62.1
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHHCCC-------eEEEEeCCh--HHHHHHH----Hcc-cCCCCeeccCCHHHHHhhCCC
Q psy9637 4 KGDIGLIGL-AVMGQNLILNMNDHGF-------TVVAYNRTT--AKVDSFL----ANE-AKGTNIIGAHSLEELVKNLKK 68 (490)
Q Consensus 4 ~~~IgiIGl-G~MG~~lA~~L~~~G~-------~V~v~dr~~--~~~~~l~----~~g-~~~~~i~~~~s~~e~v~~l~~ 68 (490)
..||+|||+ |.+|.++|..|...|. +++++|+++ ++++... ... ....++....+..+. ++.
T Consensus 3 p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~---~~d 79 (323)
T TIGR01759 3 PVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEA---FKD 79 (323)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHH---hCC
Confidence 358999998 9999999999998885 799999964 2233221 111 000111222222222 334
Q ss_pred CcEEEEecCCC----c-----------hHHHHHHhhcccCCCCCEEEcCCCCChHHHHH
Q psy9637 69 PRRVMMLVKAG----S-----------AVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDR 112 (490)
Q Consensus 69 ~dvIil~vp~~----~-----------~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~ 112 (490)
+|+|+++--.+ . .++++...+.++-+++.+||-.|| |-+..-
T Consensus 80 aDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsN--PvDv~t 136 (323)
T TIGR01759 80 VDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGN--PANTNA 136 (323)
T ss_pred CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCC--cHHHHH
Confidence 89999876332 1 133444566666555778887776 444443
|
This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms. |
| >COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.017 Score=58.63 Aligned_cols=150 Identities=19% Similarity=0.218 Sum_probs=80.8
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHHCC-CeEEEEeCChHHHHHHHHcccC-----CCCeeccCCHHHHHhhCCCCcEEEEec
Q psy9637 4 KGDIGLIGL-AVMGQNLILNMNDHG-FTVVAYNRTTAKVDSFLANEAK-----GTNIIGAHSLEELVKNLKKPRRVMMLV 76 (490)
Q Consensus 4 ~~~IgiIGl-G~MG~~lA~~L~~~G-~~V~v~dr~~~~~~~l~~~g~~-----~~~i~~~~s~~e~v~~l~~~dvIil~v 76 (490)
|+||+|||. |.-|.-|.+.|+.+- .++..+..+..+-+.+.+.-.+ ..+++ .-+++++ ..+.+|+||+|+
T Consensus 2 ~~kV~IvGasGYtG~EL~rlL~~Hp~ve~~~~ss~~~~g~~~~~~~p~l~g~~~l~~~-~~~~~~~--~~~~~DvvFlal 78 (349)
T COG0002 2 MIKVGIVGASGYTGLELLRLLAGHPDVELILISSRERAGKPVSDVHPNLRGLVDLPFQ-TIDPEKI--ELDECDVVFLAL 78 (349)
T ss_pred CceEEEEcCCCCcHHHHHHHHhcCCCeEEEEeechhhcCCchHHhCcccccccccccc-cCChhhh--hcccCCEEEEec
Confidence 579999995 999999999999875 3666665443322233322111 01111 1233333 223489999999
Q ss_pred CCCchHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHH-HHc--cccccccCCCCCccccc---cCC--ccCCCCCc
Q psy9637 77 KAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKAL-EAK--GLLYVGCGVSGGEDGAR---YGP--SLMPGGNP 148 (490)
Q Consensus 77 p~~~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l-~~~--gi~~ld~~vsGg~~~a~---~G~--~im~GG~~ 148 (490)
|++ ...+.+..+ +.+|..|||+|+-+--......++. ... +-.+++--+-|=++-.+ .+. .--+|+-+
T Consensus 79 Phg-~s~~~v~~l---~~~g~~VIDLSadfR~~d~~~ye~~Yg~~h~~~~~l~~avYGLpEl~~e~i~~A~lIAnPGCyp 154 (349)
T COG0002 79 PHG-VSAELVPEL---LEAGCKVIDLSADFRLKDPEVYEKWYGFTHAGPELLEDAVYGLPELHREKIRGAKLIANPGCYP 154 (349)
T ss_pred Cch-hHHHHHHHH---HhCCCeEEECCcccccCCHHHHHHhhCCCCCCchhhhcccccCcccCHHHHhcCCEeeCCCchH
Confidence 998 444444444 3467779999986532223333222 111 11222333333333221 222 33466655
Q ss_pred -chHHHHHHHHHh
Q psy9637 149 -AAWPALKPIFQK 160 (490)
Q Consensus 149 -~a~~~v~~ll~~ 160 (490)
.+.-.+.|+++.
T Consensus 155 Ta~iLal~PL~~~ 167 (349)
T COG0002 155 TAAILALAPLVKA 167 (349)
T ss_pred HHHHHHHHHHHHc
Confidence 445567898887
|
|
| >PRK05472 redox-sensing transcriptional repressor Rex; Provisional | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.0081 Score=57.52 Aligned_cols=78 Identities=24% Similarity=0.427 Sum_probs=51.2
Q ss_pred CCcEEEEcccHHHHHHHHHH--HHCCCeEE-EEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCc
Q psy9637 4 KGDIGLIGLAVMGQNLILNM--NDHGFTVV-AYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGS 80 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L--~~~G~~V~-v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~ 80 (490)
..+|+|||+|.+|..++..+ ...|++++ ++|+++++...... +..+...+++.+++.. ..+|.||+++|..
T Consensus 84 ~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d~~~~~~~i~----g~~v~~~~~l~~li~~-~~iD~ViIa~P~~- 157 (213)
T PRK05472 84 TWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVDPEKIGTKIG----GIPVYHIDELEEVVKE-NDIEIGILTVPAE- 157 (213)
T ss_pred CcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECChhhcCCEeC----CeEEcCHHHHHHHHHH-CCCCEEEEeCCch-
Confidence 35799999999999998863 35688877 57988776532211 1112233456666653 2489999999996
Q ss_pred hHHHHHH
Q psy9637 81 AVDDFID 87 (490)
Q Consensus 81 ~v~~vl~ 87 (490)
...++.+
T Consensus 158 ~~~~i~~ 164 (213)
T PRK05472 158 AAQEVAD 164 (213)
T ss_pred hHHHHHH
Confidence 4444443
|
|
| >PRK05086 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.019 Score=58.35 Aligned_cols=101 Identities=16% Similarity=0.158 Sum_probs=60.8
Q ss_pred CcEEEEcc-cHHHHHHHHHHHH---CCCeEEEEeCChHHH---HHHHHcccCCCCeec--cCCHHHHHhhCCCCcEEEEe
Q psy9637 5 GDIGLIGL-AVMGQNLILNMND---HGFTVVAYNRTTAKV---DSFLANEAKGTNIIG--AHSLEELVKNLKKPRRVMML 75 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~---~G~~V~v~dr~~~~~---~~l~~~g~~~~~i~~--~~s~~e~v~~l~~~dvIil~ 75 (490)
|||+|||+ |.+|..++..|.. .+++++++|+++... -.+.... ....+.. .+++.+. ++.+|+||++
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~-~~~~i~~~~~~d~~~~---l~~~DiVIit 76 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIP-TAVKIKGFSGEDPTPA---LEGADVVLIS 76 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCC-CCceEEEeCCCCHHHH---cCCCCEEEEc
Confidence 58999999 9999999988854 356899999985421 1121111 0112222 2343333 4459999999
Q ss_pred cCCCc---------------hHHHHHHhhcccCCCCCEEEcCCCCChHHHHH
Q psy9637 76 VKAGS---------------AVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDR 112 (490)
Q Consensus 76 vp~~~---------------~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~ 112 (490)
.-... .++++++.+.++ .+..+|+..+| |.|+.-
T Consensus 77 aG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~-~~~~ivivvsN--P~D~~t 125 (312)
T PRK05086 77 AGVARKPGMDRSDLFNVNAGIVKNLVEKVAKT-CPKACIGIITN--PVNTTV 125 (312)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEccC--chHHHH
Confidence 85421 233344455554 56778888887 444443
|
|
| >cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.016 Score=59.22 Aligned_cols=103 Identities=10% Similarity=0.095 Sum_probs=60.9
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCC-------eEEEEeCChHH--HHH----HHHcc-cCCCCeeccCCHHHHHhhCCCC
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDHGF-------TVVAYNRTTAK--VDS----FLANE-AKGTNIIGAHSLEELVKNLKKP 69 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~G~-------~V~v~dr~~~~--~~~----l~~~g-~~~~~i~~~~s~~e~v~~l~~~ 69 (490)
+||+|||+ |.+|..+|..|+..|. ++.++|++++. ++. +.... ....++....+..+. ++++
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~---~~da 79 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVA---FKDA 79 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHH---hCCC
Confidence 58999999 9999999999998886 79999995432 221 11110 000112222222222 3348
Q ss_pred cEEEEecCCCc----h-----------HHHHHHhhcccCCCCCEEEcCCCCChHHHHH
Q psy9637 70 RRVMMLVKAGS----A-----------VDDFIDKLVPLLEKGDIIIDGGNSEYQDTDR 112 (490)
Q Consensus 70 dvIil~vp~~~----~-----------v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~ 112 (490)
|+||++--.+. . ++++...+.++-++..++|..|| |-+..-
T Consensus 80 DivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsN--PvD~~t 135 (322)
T cd01338 80 DWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGN--PCNTNA 135 (322)
T ss_pred CEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecC--cHHHHH
Confidence 99998863321 1 33344555555545777887876 455444
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK08644 thiamine biosynthesis protein ThiF; Provisional | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.021 Score=54.75 Aligned_cols=119 Identities=13% Similarity=0.197 Sum_probs=65.4
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCe-EEEEeCChHHHHHHHHcccCCCCe--eccCCHHHHHhhCCCCcEEEEecCCCch
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFT-VVAYNRTTAKVDSFLANEAKGTNI--IGAHSLEELVKNLKKPRRVMMLVKAGSA 81 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~-V~v~dr~~~~~~~l~~~g~~~~~i--~~~~s~~e~v~~l~~~dvIil~vp~~~~ 81 (490)
.+|.|||+|.+|..++.+|++.|.. ++++|.+.-....+.........+ .-+....+.+..+ .+++-+..++.. .
T Consensus 29 ~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~l-np~v~v~~~~~~-i 106 (212)
T PRK08644 29 AKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEI-NPFVEIEAHNEK-I 106 (212)
T ss_pred CCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHH-CCCCEEEEEeee-c
Confidence 5899999999999999999999985 999998732211121110000000 0011122222222 245555555432 2
Q ss_pred HHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHc-cccccccCC
Q psy9637 82 VDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAK-GLLYVGCGV 129 (490)
Q Consensus 82 v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~-gi~~ld~~v 129 (490)
..+.+.++ ++.-|+|||+.- .+.......+.+.+. ++.++.+..
T Consensus 107 ~~~~~~~~---~~~~DvVI~a~D-~~~~r~~l~~~~~~~~~~p~I~~~~ 151 (212)
T PRK08644 107 DEDNIEEL---FKDCDIVVEAFD-NAETKAMLVETVLEHPGKKLVAASG 151 (212)
T ss_pred CHHHHHHH---HcCCCEEEECCC-CHHHHHHHHHHHHHhCCCCEEEeeh
Confidence 22222233 345689999954 334444445677777 887776543
|
|
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.064 Score=57.11 Aligned_cols=68 Identities=13% Similarity=0.153 Sum_probs=46.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCCh-HHHH----HHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecC
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTT-AKVD----SFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVK 77 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~-~~~~----~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp 77 (490)
.++|.|+|.|.+|..+|..|++.|++|+++|++. +.++ ++.+.+. ++...+...+.... +|+||.+.-
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~---~d~vv~~~g 77 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELGI---ELVLGEYPEEFLEG---VDLVVVSPG 77 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCC---EEEeCCcchhHhhc---CCEEEECCC
Confidence 3689999999999999999999999999999985 3332 2222222 23223333344343 899998764
|
|
| >PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.078 Score=57.31 Aligned_cols=66 Identities=8% Similarity=0.130 Sum_probs=47.4
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEec
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLV 76 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~v 76 (490)
.+|.|+|+|..|.+.++.|...|++|+++|++++..+.+.+.+.. +.......+.+.. +|+||.+-
T Consensus 13 ~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~~~~l~~~g~~---~~~~~~~~~~l~~---~D~VV~Sp 78 (488)
T PRK03369 13 APVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDALRPHAERGVA---TVSTSDAVQQIAD---YALVVTSP 78 (488)
T ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHhCCCE---EEcCcchHhHhhc---CCEEEECC
Confidence 589999999999999999999999999999887766655544332 2112222333333 79888765
|
|
| >PLN00106 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.025 Score=57.64 Aligned_cols=99 Identities=14% Similarity=0.124 Sum_probs=59.1
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCC--eEEEEeCChHHHH--HHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCC
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDHGF--TVVAYNRTTAKVD--SFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAG 79 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~G~--~V~v~dr~~~~~~--~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~ 79 (490)
.||+|||+ |.+|..+|..|+..+. ++.++|+++...+ .+..... ...+..+.+..+..+.++.+|+||++.-.+
T Consensus 19 ~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~-~~~i~~~~~~~d~~~~l~~aDiVVitAG~~ 97 (323)
T PLN00106 19 FKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINT-PAQVRGFLGDDQLGDALKGADLVIIPAGVP 97 (323)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCCc-CceEEEEeCCCCHHHHcCCCCEEEEeCCCC
Confidence 58999999 9999999999997765 8999999872111 1111111 112322223323334455599999987432
Q ss_pred c----h-----------HHHHHHhhcccCCCCCEEEcCCCC
Q psy9637 80 S----A-----------VDDFIDKLVPLLEKGDIIIDGGNS 105 (490)
Q Consensus 80 ~----~-----------v~~vl~~l~~~l~~g~iiId~s~~ 105 (490)
. . ++++++.+.++ .++.+|+..||-
T Consensus 98 ~~~g~~R~dll~~N~~i~~~i~~~i~~~-~p~aivivvSNP 137 (323)
T PLN00106 98 RKPGMTRDDLFNINAGIVKTLCEAVAKH-CPNALVNIISNP 137 (323)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEeCCC
Confidence 1 1 22223344433 367788888773
|
|
| >PLN00112 malate dehydrogenase (NADP); Provisional | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.027 Score=59.64 Aligned_cols=102 Identities=9% Similarity=0.140 Sum_probs=65.3
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHC-------CC--eEEEEeCChHHHHHHHHcccC-----CCCeec-cCCHHHHHhhCCC
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDH-------GF--TVVAYNRTTAKVDSFLANEAK-----GTNIIG-AHSLEELVKNLKK 68 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~-------G~--~V~v~dr~~~~~~~l~~~g~~-----~~~i~~-~~s~~e~v~~l~~ 68 (490)
-||+|||+ |.+|..+|..|+.. |. +++.+|++.++++...-.-.. ..++.. ..+.+++ + +
T Consensus 101 ~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~~ye~~-k---d 176 (444)
T PLN00112 101 INVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGIDPYEVF-Q---D 176 (444)
T ss_pred eEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecCCHHHh-C---c
Confidence 58999999 99999999999987 65 788999998887643321100 112332 3344433 3 3
Q ss_pred CcEEEEecCCCc---------------hHHHHHHhhcccCCCCCEEEcCCCCChHHHHH
Q psy9637 69 PRRVMMLVKAGS---------------AVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDR 112 (490)
Q Consensus 69 ~dvIil~vp~~~---------------~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~ 112 (490)
+|+||+.--.+. .++++...|.++..++.+||-.|| |-++.-
T Consensus 177 aDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsN--PvDv~t 233 (444)
T PLN00112 177 AEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGN--PCNTNA 233 (444)
T ss_pred CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCC--cHHHHH
Confidence 899998764321 133344555554456778888886 445444
|
|
| >PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.017 Score=48.91 Aligned_cols=86 Identities=20% Similarity=0.254 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH-HHHhhcccC
Q psy9637 15 MGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD-FIDKLVPLL 93 (490)
Q Consensus 15 MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~-vl~~l~~~l 93 (490)
-+..|+..|.+.|.+|.+||+.-.......... ..++..++++.+.++. +|.|+++++.. ..+. -.+.+...+
T Consensus 18 p~~~l~~~L~~~g~~V~~~DP~v~~~~~~~~~~--~~~~~~~~~~~~~~~~---~D~vvl~t~h~-~f~~l~~~~~~~~~ 91 (106)
T PF03720_consen 18 PALELIEELKERGAEVSVYDPYVDEEEIKELGK--LEGVEVCDDLEEALKG---ADAVVLATDHD-EFRELDWEEIAKLM 91 (106)
T ss_dssp HHHHHHHHHHHTT-EEEEE-TTSHHHHHHHHCH--HHCEEEESSHHHHHTT---ESEEEESS--G-GGGCCGHHHHHHHS
T ss_pred HHHHHHHHHHHCCCEEEEECCccChHHHHhhCC--ccceEEecCHHHHhcC---CCEEEEEecCH-HHhccCHHHHHHhc
Confidence 456789999999999999998866554433110 0124467889888887 89999999986 4443 345666667
Q ss_pred CCCCEEEcCCCCC
Q psy9637 94 EKGDIIIDGGNSE 106 (490)
Q Consensus 94 ~~g~iiId~s~~~ 106 (490)
.++.+|+|+-+..
T Consensus 92 ~~~~~iiD~~~~~ 104 (106)
T PF03720_consen 92 RKPPVIIDGRNIL 104 (106)
T ss_dssp CSSEEEEESSSTS
T ss_pred CCCCEEEECcccc
Confidence 7889999997754
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B .... |
| >PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.014 Score=48.48 Aligned_cols=80 Identities=24% Similarity=0.343 Sum_probs=58.0
Q ss_pred CCcEEEEcccHHHHHHHHHHH-HCCCe-EEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCch
Q psy9637 4 KGDIGLIGLAVMGQNLILNMN-DHGFT-VVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSA 81 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~-~~G~~-V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~ 81 (490)
..+|.|+|+|.+|..++.++. ..|+. +.++|.++++...-. ..+....+..++.+.+ .+|+.+++||+. .
T Consensus 3 ~~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~~~~G~~i------~gipV~~~~~~l~~~~-~i~iaii~VP~~-~ 74 (96)
T PF02629_consen 3 KTNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDPEKIGKEI------GGIPVYGSMDELEEFI-EIDIAIITVPAE-A 74 (96)
T ss_dssp TEEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECTTTTTSEE------TTEEEESSHHHHHHHC-TTSEEEEES-HH-H
T ss_pred CCeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCCCccCcEE------CCEEeeccHHHhhhhh-CCCEEEEEcCHH-H
Confidence 357999999999998886544 56776 457899988543211 1344566999999887 499999999984 6
Q ss_pred HHHHHHhhcc
Q psy9637 82 VDDFIDKLVP 91 (490)
Q Consensus 82 v~~vl~~l~~ 91 (490)
+.+++.++..
T Consensus 75 a~~~~~~~~~ 84 (96)
T PF02629_consen 75 AQEVADELVE 84 (96)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777776655
|
; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D .... |
| >PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.023 Score=56.46 Aligned_cols=74 Identities=19% Similarity=0.287 Sum_probs=57.8
Q ss_pred CcEEEEccc-HHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 5 GDIGLIGLA-VMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 5 ~~IgiIGlG-~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
+++.|||-+ .+|.++|..|.++|..|++++.. +.++.+.+.. +|+|+.++.-+.-+.
T Consensus 158 k~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~-------------------T~~l~~~~~~---ADIvV~AvGkp~~i~ 215 (281)
T PRK14183 158 KDVCVVGASNIVGKPMAALLLNANATVDICHIF-------------------TKDLKAHTKK---ADIVIVGVGKPNLIT 215 (281)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC-------------------CcCHHHHHhh---CCEEEEecCcccccC
Confidence 589999988 89999999999999999988642 2355666676 999999997753322
Q ss_pred HHHHhhcccCCCCCEEEcCCCCC
Q psy9637 84 DFIDKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 84 ~vl~~l~~~l~~g~iiId~s~~~ 106 (490)
...+++|.+|||.|...
T Consensus 216 ------~~~vk~gavvIDvGin~ 232 (281)
T PRK14183 216 ------EDMVKEGAIVIDIGINR 232 (281)
T ss_pred ------HHHcCCCcEEEEeeccc
Confidence 12467999999999754
|
|
| >COG4408 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.99 E-value=1.9 Score=43.60 Aligned_cols=101 Identities=18% Similarity=0.221 Sum_probs=66.7
Q ss_pred CCCCCcEEEEcccHHHHHHHHHHHHCC-CeEEEEeCChHHHHHHHHcccC----------------CCCe---eccCCHH
Q psy9637 1 MAAKGDIGLIGLAVMGQNLILNMNDHG-FTVVAYNRTTAKVDSFLANEAK----------------GTNI---IGAHSLE 60 (490)
Q Consensus 1 M~~~~~IgiIGlG~MG~~lA~~L~~~G-~~V~v~dr~~~~~~~l~~~g~~----------------~~~i---~~~~s~~ 60 (490)
|+.|.++-++|+|...--+|.-|..+| +.+-.++|-..+-+.+.+.-.. ..++ ....+++
T Consensus 1 m~~m~~vLllGtGpvaIQlAv~l~~h~d~~lg~~~r~s~rse~l~qala~~~ql~l~~q~eahr~leg~~~id~~~kd~a 80 (431)
T COG4408 1 MHNMLPVLLLGTGPVAIQLAVDLSAHGDARLGLYNRPSTRSERLKQALALTPQLYLQGQGEAHRQLEGSVTIDCYIKDLA 80 (431)
T ss_pred CCcccceeEeecCcHHHHHHHHHHhccCceeeccCCCCchhHHHHHHHhcCCeEEEEeccHHHHhhcCceehhHHHhhHH
Confidence 777889999999999999999999887 5788888865555555442211 0111 1234566
Q ss_pred HHHhhCCCCcEEEEecCCCchHHHHHHhhc-ccCCCCCEEEcCCCC
Q psy9637 61 ELVKNLKKPRRVMMLVKAGSAVDDFIDKLV-PLLEKGDIIIDGGNS 105 (490)
Q Consensus 61 e~v~~l~~~dvIil~vp~~~~v~~vl~~l~-~~l~~g~iiId~s~~ 105 (490)
++..+ =+.+|+|||++ +-.+|+++|- +.|+.=+.+|-.|.+
T Consensus 81 ~~~~d---wqtlilav~aD-aY~dvlqqi~~e~L~~vk~viLiSpt 122 (431)
T COG4408 81 QAVGD---WQTLILAVPAD-AYYDVLQQIPWEALPQVKSVILISPT 122 (431)
T ss_pred Hhhch---hheEEEEeecH-HHHHHHhcCCHhHhccccEEEEeccc
Confidence 66655 58899999996 7777876553 233333444444443
|
|
| >cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.032 Score=53.97 Aligned_cols=122 Identities=11% Similarity=0.161 Sum_probs=71.0
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHcccC-CCCe--eccCCHHHHHhhCCCCcEEEEecCCC
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGF-TVVAYNRTTAKVDSFLANEAK-GTNI--IGAHSLEELVKNLKKPRRVMMLVKAG 79 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~g~~-~~~i--~~~~s~~e~v~~l~~~dvIil~vp~~ 79 (490)
..+|.|||+|..|..+|.+|++.|. +++++|.+.-....+.....- ...+ .-++...+.+..+ .|++-+...+..
T Consensus 21 ~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~-np~~~i~~~~~~ 99 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAI-NPDVEIEAYNER 99 (228)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHh-CCCCEEEEecce
Confidence 3589999999999999999999997 788888764322222211000 0000 0112223333322 255555556543
Q ss_pred chHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCC
Q psy9637 80 SAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSG 131 (490)
Q Consensus 80 ~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsG 131 (490)
...+-+.+ .+..-|+||++.- .+.....+.+.+.+.++.|+++++.|
T Consensus 100 -i~~~~~~~---~~~~~DvVi~~~d-~~~~r~~l~~~~~~~~ip~i~~g~~g 146 (228)
T cd00757 100 -LDAENAEE---LIAGYDLVLDCTD-NFATRYLINDACVKLGKPLVSGAVLG 146 (228)
T ss_pred -eCHHHHHH---HHhCCCEEEEcCC-CHHHHHHHHHHHHHcCCCEEEEEecc
Confidence 21222222 2344689999865 34444444477778899999988765
|
Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). |
| >cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.022 Score=53.95 Aligned_cols=123 Identities=18% Similarity=0.312 Sum_probs=70.5
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHccc-CC--CCe--eccCCHHHHHhhCCCCcEEEEecCC
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGF-TVVAYNRTTAKVDSFLANEA-KG--TNI--IGAHSLEELVKNLKKPRRVMMLVKA 78 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~g~-~~--~~i--~~~~s~~e~v~~l~~~dvIil~vp~ 78 (490)
.+|.|||+|.+|..++++|+..|. +++++|.+.-....+..... .. ..+ .-+....+.+..+ .|++-+..++.
T Consensus 20 s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~~~~L~~l-Np~v~i~~~~~ 98 (198)
T cd01485 20 AKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEFLQEL-NPNVKLSIVEE 98 (198)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCcCChhcCcccEecccchhhcCchHHHHHHHHHHHH-CCCCEEEEEec
Confidence 689999999999999999999997 58899876332222211100 00 000 0111222223322 26666666544
Q ss_pred Cch-HHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCCC
Q psy9637 79 GSA-VDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGG 132 (490)
Q Consensus 79 ~~~-v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg 132 (490)
... ..+-..+ .+++=++||++... +.......+.+.++++.|+.+.+.|-
T Consensus 99 ~~~~~~~~~~~---~~~~~dvVi~~~d~-~~~~~~ln~~c~~~~ip~i~~~~~G~ 149 (198)
T cd01485 99 DSLSNDSNIEE---YLQKFTLVIATEEN-YERTAKVNDVCRKHHIPFISCATYGL 149 (198)
T ss_pred ccccchhhHHH---HHhCCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEEeecC
Confidence 211 0111222 23455899988543 44445555888888998888876543
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol |
| >PLN02477 glutamate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.05 Score=57.19 Aligned_cols=113 Identities=12% Similarity=0.160 Sum_probs=72.8
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEE-EEeCC----------hHHHHHHHHcccCCCCee--ccCCHHHHHhhCCCCcE
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVV-AYNRT----------TAKVDSFLANEAKGTNII--GAHSLEELVKNLKKPRR 71 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~-v~dr~----------~~~~~~l~~~g~~~~~i~--~~~s~~e~v~~l~~~dv 71 (490)
++|.|.|+|++|...|+.|.+.|..|+ +.|.+ .+.+.+..+....-.... ..-+.+++... ++|+
T Consensus 207 ~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~~G~iy~~~GLD~~~L~~~k~~~g~l~~~~~a~~i~~~e~l~~--~~Dv 284 (410)
T PLN02477 207 QTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDITGAVKNENGLDIPALRKHVAEGGGLKGFPGGDPIDPDDILVE--PCDV 284 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCchhccccceEecCccceec--cccE
Confidence 589999999999999999999999988 66776 555544333221100000 01133444332 4888
Q ss_pred EEEecCCCchHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccc
Q psy9637 72 VMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVG 126 (490)
Q Consensus 72 Iil~vp~~~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld 126 (490)
++-|--.+...++.+..+ +=++|+...|... +.+..+.|.++|+.|+.
T Consensus 285 liP~Al~~~I~~~na~~i-----~ak~I~egAN~p~--t~ea~~~L~~rGI~~~P 332 (410)
T PLN02477 285 LIPAALGGVINKENAADV-----KAKFIVEAANHPT--DPEADEILRKKGVVVLP 332 (410)
T ss_pred EeeccccccCCHhHHHHc-----CCcEEEeCCCCCC--CHHHHHHHHHCCcEEEC
Confidence 876654443334444433 4578999998653 55666888999998863
|
|
| >PRK09414 glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.052 Score=57.57 Aligned_cols=115 Identities=10% Similarity=0.067 Sum_probs=77.5
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEE-e----------CChHHHHHHHHcc-cCCCCee-----ccCCHHHHHhhCC
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAY-N----------RTTAKVDSFLANE-AKGTNII-----GAHSLEELVKNLK 67 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~-d----------r~~~~~~~l~~~g-~~~~~i~-----~~~s~~e~v~~l~ 67 (490)
++|.|.|.|++|...|+.|.+.|..|++. | .+.+.+.+..+.. ..-..+. ...+.+++.. +
T Consensus 233 ~rVaIqGfGnVG~~~A~~L~~~GakVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~~i~~~~i~~-~- 310 (445)
T PRK09414 233 KRVVVSGSGNVAIYAIEKAQQLGAKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAEYLEGGSPWS-V- 310 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCeecCCccccc-c-
Confidence 68999999999999999999999999876 7 6767665554321 0000000 0113333332 1
Q ss_pred CCcEEEEecCCCchHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccccc
Q psy9637 68 KPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYV 125 (490)
Q Consensus 68 ~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~l 125 (490)
++||++-|-..+....+....+.. ++=++|+.+.|..- +.+..+.|.++|+.|+
T Consensus 311 d~DVliPaAl~n~It~~~a~~i~~--~~akiIvEgAN~p~--t~~A~~~L~~rGI~~v 364 (445)
T PRK09414 311 PCDIALPCATQNELDEEDAKTLIA--NGVKAVAEGANMPS--TPEAIEVFLEAGVLFA 364 (445)
T ss_pred CCcEEEecCCcCcCCHHHHHHHHH--cCCeEEEcCCCCCC--CHHHHHHHHHCCcEEE
Confidence 489999888877666666666642 13478889988653 6666688899999886
|
|
| >PRK14874 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.015 Score=59.63 Aligned_cols=92 Identities=9% Similarity=0.199 Sum_probs=58.6
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHHCCCeE---EEEeCChHHHHHHHHcccCCCCeeccC-CHHHHHhhCCCCcEEEEecCC
Q psy9637 4 KGDIGLIGL-AVMGQNLILNMNDHGFTV---VAYNRTTAKVDSFLANEAKGTNIIGAH-SLEELVKNLKKPRRVMMLVKA 78 (490)
Q Consensus 4 ~~~IgiIGl-G~MG~~lA~~L~~~G~~V---~v~dr~~~~~~~l~~~g~~~~~i~~~~-s~~e~v~~l~~~dvIil~vp~ 78 (490)
++||+|||. |..|.-+.+.|.++||++ ....++.+.-+.+.-.+ ..+...+ +..++ . .+|+||+|+|.
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~~g---~~i~v~d~~~~~~-~---~vDvVf~A~g~ 73 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSFKG---KELKVEDLTTFDF-S---GVDIALFSAGG 73 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeeeeCC---ceeEEeeCCHHHH-c---CCCEEEECCCh
Confidence 368999995 999999999999988864 55554433323322111 1222221 22222 3 48999999998
Q ss_pred CchHHHHHHhhcccCCCCCEEEcCCCCC
Q psy9637 79 GSAVDDFIDKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 79 ~~~v~~vl~~l~~~l~~g~iiId~s~~~ 106 (490)
+ ...++...+. ..|..|||.|..+
T Consensus 74 g-~s~~~~~~~~---~~G~~VIDlS~~~ 97 (334)
T PRK14874 74 S-VSKKYAPKAA---AAGAVVIDNSSAF 97 (334)
T ss_pred H-HHHHHHHHHH---hCCCEEEECCchh
Confidence 6 5555555443 4688999998643
|
|
| >PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.031 Score=53.75 Aligned_cols=71 Identities=23% Similarity=0.281 Sum_probs=53.9
Q ss_pred EEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChH--HHHHHHHcccCCCCe-eccCCHHHHHhhCCCCcEEEEecCCC
Q psy9637 7 IGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTA--KVDSFLANEAKGTNI-IGAHSLEELVKNLKKPRRVMMLVKAG 79 (490)
Q Consensus 7 IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~--~~~~l~~~g~~~~~i-~~~~s~~e~v~~l~~~dvIil~vp~~ 79 (490)
|.|+|. |..|+.++..|.+.+|+|.+.-|++. ..+.+...|.. -+ .-.++.+.+.+.++..|.||++++..
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~--vv~~d~~~~~~l~~al~g~d~v~~~~~~~ 75 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQLQALGAE--VVEADYDDPESLVAALKGVDAVFSVTPPS 75 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTE--EEES-TT-HHHHHHHHTTCSEEEEESSCS
T ss_pred CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhhhhcccce--EeecccCCHHHHHHHHcCCceEEeecCcc
Confidence 689995 99999999999999999999999864 35566665543 01 12456777888888899999999853
|
NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B .... |
| >PRK06718 precorrin-2 dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.025 Score=53.72 Aligned_cols=79 Identities=9% Similarity=0.131 Sum_probs=51.9
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChH-HHHHHHHcccCCCCeeccC-CHHHHHhhCCCCcEEEEecCCCchH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTA-KVDSFLANEAKGTNIIGAH-SLEELVKNLKKPRRVMMLVKAGSAV 82 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~-~~~~l~~~g~~~~~i~~~~-s~~e~v~~l~~~dvIil~vp~~~~v 82 (490)
++|-|||.|.||...+..|.+.|++|++++++.. .+..+...+. +.... .+.+ ..+..+|+||.++.++ .+
T Consensus 11 k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~l~~~~~----i~~~~~~~~~--~~l~~adlViaaT~d~-el 83 (202)
T PRK06718 11 KRVVIVGGGKVAGRRAITLLKYGAHIVVISPELTENLVKLVEEGK----IRWKQKEFEP--SDIVDAFLVIAATNDP-RV 83 (202)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHhCCC----EEEEecCCCh--hhcCCceEEEEcCCCH-HH
Confidence 5899999999999999999999999999987642 3344443321 21111 1111 1234489888888775 56
Q ss_pred HHHHHhhc
Q psy9637 83 DDFIDKLV 90 (490)
Q Consensus 83 ~~vl~~l~ 90 (490)
...+....
T Consensus 84 N~~i~~~a 91 (202)
T PRK06718 84 NEQVKEDL 91 (202)
T ss_pred HHHHHHHH
Confidence 65554443
|
|
| >COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.031 Score=56.44 Aligned_cols=103 Identities=17% Similarity=0.231 Sum_probs=60.8
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC--eEEEEeCChHHHHHHHHcc---cC--CCCeeccCCHHHHHhhCCCCcEEEEec-
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGF--TVVAYNRTTAKVDSFLANE---AK--GTNIIGAHSLEELVKNLKKPRRVMMLV- 76 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~g---~~--~~~i~~~~s~~e~v~~l~~~dvIil~v- 76 (490)
+||+|||.|.+|.++|..|...+. ++.+||++.++.+-....- .. ........+ .+ .+.|+.+|+|+++.
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~-~~-y~~~~~aDiVvitAG 78 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGD-GD-YEDLKGADIVVITAG 78 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCceEEecC-CC-hhhhcCCCEEEEeCC
Confidence 489999999999999999987764 7999999965544322110 00 111122222 11 23344589999988
Q ss_pred -CC--Cc-----------hHHHHHHhhcccCCCCCEEEcCCCCChHHHHH
Q psy9637 77 -KA--GS-----------AVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDR 112 (490)
Q Consensus 77 -p~--~~-----------~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~ 112 (490)
|- +. .++++..++...- ++.+++-.+| |-++.-
T Consensus 79 ~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~-~d~ivlVvtN--PvD~~t 125 (313)
T COG0039 79 VPRKPGMTRLDLLEKNAKIVKDIAKAIAKYA-PDAIVLVVTN--PVDILT 125 (313)
T ss_pred CCCCCCCCHHHHHHhhHHHHHHHHHHHHhhC-CCeEEEEecC--cHHHHH
Confidence 22 11 2333445555554 4667777776 444443
|
|
| >COG2344 AT-rich DNA-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.02 Score=53.02 Aligned_cols=81 Identities=21% Similarity=0.417 Sum_probs=55.8
Q ss_pred CCcEEEEcccHHHHHHHHH-HH-HCCCeEE-EEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCc
Q psy9637 4 KGDIGLIGLAVMGQNLILN-MN-DHGFTVV-AYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGS 80 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~-L~-~~G~~V~-v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~ 80 (490)
+.++.|||.|++|.+++.. +. ++|++++ +||.+++++-..... -.+.-.++++..+++- +.|+.|+|||..
T Consensus 84 ~tnviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG~~~~~----v~V~~~d~le~~v~~~-dv~iaiLtVPa~- 157 (211)
T COG2344 84 TTNVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPDKVGTKIGD----VPVYDLDDLEKFVKKN-DVEIAILTVPAE- 157 (211)
T ss_pred ceeEEEEccChHHHHHhcCcchhhcCceEEEEecCCHHHhCcccCC----eeeechHHHHHHHHhc-CccEEEEEccHH-
Confidence 4579999999999998753 44 6788765 799999866543321 2233456666666642 478999999995
Q ss_pred hHHHHHHhhc
Q psy9637 81 AVDDFIDKLV 90 (490)
Q Consensus 81 ~v~~vl~~l~ 90 (490)
...++.+.|.
T Consensus 158 ~AQ~vad~Lv 167 (211)
T COG2344 158 HAQEVADRLV 167 (211)
T ss_pred HHHHHHHHHH
Confidence 5555655544
|
|
| >TIGR02355 moeB molybdopterin synthase sulfurylase MoeB | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.027 Score=55.05 Aligned_cols=121 Identities=14% Similarity=0.199 Sum_probs=72.0
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHcccCC-CCe--eccCCHHHHHhhCCCCcEEEEecCCCc
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGF-TVVAYNRTTAKVDSFLANEAKG-TNI--IGAHSLEELVKNLKKPRRVMMLVKAGS 80 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~g~~~-~~i--~~~~s~~e~v~~l~~~dvIil~vp~~~ 80 (490)
.+|.|+|+|-+|..++.+|++.|. +++++|.+.-....+..+.... ..+ .-+....+.+.++ .|++-+..++..
T Consensus 25 ~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~i-np~v~i~~~~~~- 102 (240)
T TIGR02355 25 SRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQI-NPHIAINPINAK- 102 (240)
T ss_pred CcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHH-CCCcEEEEEecc-
Confidence 589999999999999999999996 6888888744333332211000 000 0112222333322 266666666542
Q ss_pred hHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCC
Q psy9637 81 AVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSG 131 (490)
Q Consensus 81 ~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsG 131 (490)
...+-+.+ .+..-|+|||+.-. +.....+.+.+.+.++.|+.+.+.|
T Consensus 103 i~~~~~~~---~~~~~DlVvd~~D~-~~~r~~ln~~~~~~~ip~v~~~~~g 149 (240)
T TIGR02355 103 LDDAELAA---LIAEHDIVVDCTDN-VEVRNQLNRQCFAAKVPLVSGAAIR 149 (240)
T ss_pred CCHHHHHH---HhhcCCEEEEcCCC-HHHHHHHHHHHHHcCCCEEEEEecc
Confidence 22222222 34566899999864 3444444477788899888876654
|
This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899). |
| >PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.11 Score=56.06 Aligned_cols=40 Identities=18% Similarity=0.327 Sum_probs=35.0
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHH
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSF 43 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l 43 (490)
+++|.|+|+|..|.++|+.|.+.|++|+++|+++....++
T Consensus 15 ~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~ 54 (473)
T PRK00141 15 SGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETARHKL 54 (473)
T ss_pred CCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHHHHHH
Confidence 3579999999999999999999999999999987655443
|
|
| >PRK08223 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.042 Score=54.88 Aligned_cols=122 Identities=16% Similarity=0.231 Sum_probs=69.8
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHccc-CCCCe--eccCCHHHHHhhCCCCcEEEEecCCCc
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGF-TVVAYNRTTAKVDSFLANEA-KGTNI--IGAHSLEELVKNLKKPRRVMMLVKAGS 80 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~g~-~~~~i--~~~~s~~e~v~~l~~~dvIil~vp~~~ 80 (490)
.+|.|||+|-+|..++.+|+..|. +++++|.+.=....+..+-. ....+ .-++..++.+.++ .|++=|...+..
T Consensus 28 s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~i-NP~v~V~~~~~~- 105 (287)
T PRK08223 28 SRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDI-NPELEIRAFPEG- 105 (287)
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHH-CCCCEEEEEecc-
Confidence 589999999999999999999997 68888876433333322111 00000 0122233333333 244444445432
Q ss_pred hHHHHHHhhcccCCCCCEEEcCCCCCh-HHHHHHHHHHHHccccccccCCCC
Q psy9637 81 AVDDFIDKLVPLLEKGDIIIDGGNSEY-QDTDRRSKALEAKGLLYVGCGVSG 131 (490)
Q Consensus 81 ~v~~vl~~l~~~l~~g~iiId~s~~~~-~~~~~~~~~l~~~gi~~ld~~vsG 131 (490)
...+-+.++ +..-|+|||+..... .......+.+...++.++.+.+.|
T Consensus 106 l~~~n~~~l---l~~~DlVvD~~D~~~~~~r~~ln~~c~~~~iP~V~~~~~g 154 (287)
T PRK08223 106 IGKENADAF---LDGVDVYVDGLDFFEFDARRLVFAACQQRGIPALTAAPLG 154 (287)
T ss_pred cCccCHHHH---HhCCCEEEECCCCCcHHHHHHHHHHHHHcCCCEEEEeccC
Confidence 112222333 334589999986432 333334477788899888876544
|
|
| >PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.041 Score=54.92 Aligned_cols=74 Identities=14% Similarity=0.276 Sum_probs=57.9
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
+++.|||- ..+|.++|..|.++|..|++++.. +.++++.+.+ +|+||.++.-+.-+.
T Consensus 156 k~vvViGrS~iVGkPla~lL~~~~aTVtichs~-------------------T~~l~~~~~~---ADIvIsAvGkp~~i~ 213 (287)
T PRK14173 156 KEVVVVGRSNIVGKPLAALLLREDATVTLAHSK-------------------TQDLPAVTRR---ADVLVVAVGRPHLIT 213 (287)
T ss_pred CEEEEECCCCccHHHHHHHHHHCCCEEEEeCCC-------------------CCCHHHHHhh---CCEEEEecCCcCccC
Confidence 57999995 678999999999999999988743 3466677776 999999997753321
Q ss_pred HHHHhhcccCCCCCEEEcCCCCC
Q psy9637 84 DFIDKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 84 ~vl~~l~~~l~~g~iiId~s~~~ 106 (490)
...+++|.+|||.|...
T Consensus 214 ------~~~vk~GavVIDVGin~ 230 (287)
T PRK14173 214 ------PEMVRPGAVVVDVGINR 230 (287)
T ss_pred ------HHHcCCCCEEEEccCcc
Confidence 12467999999999753
|
|
| >cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1 | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.037 Score=52.35 Aligned_cols=120 Identities=17% Similarity=0.244 Sum_probs=70.1
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHcccC-CCCe--eccCCHHHHHhhCCCCcEEEEecCCCc
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGF-TVVAYNRTTAKVDSFLANEAK-GTNI--IGAHSLEELVKNLKKPRRVMMLVKAGS 80 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~g~~-~~~i--~~~~s~~e~v~~l~~~dvIil~vp~~~ 80 (490)
.+|.|||+|.+|..++++|+..|. +++++|.+.-....+.....- ...+ .-+....+.++++ .|++-+-+.+..
T Consensus 22 s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~l-Np~v~i~~~~~~- 99 (197)
T cd01492 22 ARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRAL-NPRVKVSVDTDD- 99 (197)
T ss_pred CcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHH-CCCCEEEEEecC-
Confidence 589999999999999999999997 588998764322222111000 0000 0122223333333 367666655442
Q ss_pred hHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCC
Q psy9637 81 AVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSG 131 (490)
Q Consensus 81 ~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsG 131 (490)
+.+...++ ++.=++||++.. .+.......+.+.++++.|+.+.+.|
T Consensus 100 -~~~~~~~~---~~~~dvVi~~~~-~~~~~~~ln~~c~~~~ip~i~~~~~G 145 (197)
T cd01492 100 -ISEKPEEF---FSQFDVVVATEL-SRAELVKINELCRKLGVKFYATGVHG 145 (197)
T ss_pred -ccccHHHH---HhCCCEEEECCC-CHHHHHHHHHHHHHcCCCEEEEEecC
Confidence 21212222 334589998864 34444445577888899998887755
|
Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain. |
| >TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.11 Score=49.56 Aligned_cols=67 Identities=7% Similarity=0.003 Sum_probs=47.3
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChH-HHHHHHHcccCCCCeec---cCCHHHHHhhCCCCcEEEEecCCC
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTA-KVDSFLANEAKGTNIIG---AHSLEELVKNLKKPRRVMMLVKAG 79 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~-~~~~l~~~g~~~~~i~~---~~s~~e~v~~l~~~dvIil~vp~~ 79 (490)
.+|.|||.|.+|..-++.|++.|.+|++++++.. ..+.+.+.+ ++.. .....+ ++.+++||.++.+.
T Consensus 10 k~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~~~~----~i~~~~~~~~~~d----l~~~~lVi~at~d~ 80 (205)
T TIGR01470 10 RAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELTLLAEQG----GITWLARCFDADI----LEGAFLVIAATDDE 80 (205)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHcC----CEEEEeCCCCHHH----hCCcEEEEECCCCH
Confidence 5899999999999999999999999999987653 344554433 2222 112233 33488988887664
|
This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms. |
| >PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.046 Score=46.89 Aligned_cols=102 Identities=20% Similarity=0.341 Sum_probs=59.0
Q ss_pred cccHHHHHHHHHHHHC----CCeEE-EEeCC----hHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCch
Q psy9637 11 GLAVMGQNLILNMNDH----GFTVV-AYNRT----TAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSA 81 (490)
Q Consensus 11 GlG~MG~~lA~~L~~~----G~~V~-v~dr~----~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~ 81 (490)
|+|.||+.++..|.++ +++|. ++||+ ......+. . ...+.+++++++.. .+|+||-|.+. ++
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~--~-----~~~~~~~~~~~~~~-~~dvvVE~t~~-~~ 71 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRSMLISKDWAASFP--D-----EAFTTDLEELIDDP-DIDVVVECTSS-EA 71 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESSEEEETTHHHHHT--H-----SCEESSHHHHHTHT-T-SEEEE-SSC-HH
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECCchhhhhhhhhcc--c-----ccccCCHHHHhcCc-CCCEEEECCCc-hH
Confidence 8999999999999987 45655 67888 12111111 1 12578999998843 38999999544 45
Q ss_pred HHHHHHhhcccCCCCCEEEcCCCCChH--HH-HHHHHHHHHccccc
Q psy9637 82 VDDFIDKLVPLLEKGDIIIDGGNSEYQ--DT-DRRSKALEAKGLLY 124 (490)
Q Consensus 82 v~~vl~~l~~~l~~g~iiId~s~~~~~--~~-~~~~~~l~~~gi~~ 124 (490)
+.+.+. +.|+.|.-||-.+..... .. .++.+..++.|.+|
T Consensus 72 ~~~~~~---~~L~~G~~VVt~nk~ala~~~~~~~L~~~A~~~g~~~ 114 (117)
T PF03447_consen 72 VAEYYE---KALERGKHVVTANKGALADEALYEELREAARKNGVRI 114 (117)
T ss_dssp HHHHHH---HHHHTTCEEEES-HHHHHSHHHHHHHHHHHHHHT-EE
T ss_pred HHHHHH---HHHHCCCeEEEECHHHhhhHHHHHHHHHHHHHcCCEE
Confidence 555444 445678888887764433 12 22224444456544
|
Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D .... |
| >PRK06719 precorrin-2 dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.054 Score=49.33 Aligned_cols=76 Identities=12% Similarity=0.127 Sum_probs=50.5
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeec-cCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIG-AHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~-~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
++|.|||.|.+|...++.|.+.|++|+++++ +..+++.+.+. +.. ...+.+ ..++.+|+||.++.++ .+.
T Consensus 14 ~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp--~~~~~l~~l~~----i~~~~~~~~~--~dl~~a~lViaaT~d~-e~N 84 (157)
T PRK06719 14 KVVVIIGGGKIAYRKASGLKDTGAFVTVVSP--EICKEMKELPY----ITWKQKTFSN--DDIKDAHLIYAATNQH-AVN 84 (157)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcC--ccCHHHHhccC----cEEEecccCh--hcCCCceEEEECCCCH-HHH
Confidence 5899999999999999999999999999964 33444443211 111 111211 1345589999887664 666
Q ss_pred HHHHhh
Q psy9637 84 DFIDKL 89 (490)
Q Consensus 84 ~vl~~l 89 (490)
..+...
T Consensus 85 ~~i~~~ 90 (157)
T PRK06719 85 MMVKQA 90 (157)
T ss_pred HHHHHH
Confidence 655433
|
|
| >TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.054 Score=56.49 Aligned_cols=104 Identities=10% Similarity=0.104 Sum_probs=62.8
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCC-------eEEEE--eCChHHHHHHHHcccC-----CCCeeccCCHHHHHhhCCCC
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDHGF-------TVVAY--NRTTAKVDSFLANEAK-----GTNIIGAHSLEELVKNLKKP 69 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~G~-------~V~v~--dr~~~~~~~l~~~g~~-----~~~i~~~~s~~e~v~~l~~~ 69 (490)
-||+|||+ |.+|.++|..|+..|. .+.++ |++.++++...-.-.. ..++....+..+.++ ++
T Consensus 45 ~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~~~~y~~~k---da 121 (387)
T TIGR01757 45 VNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIGIDPYEVFE---DA 121 (387)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEecCCHHHhC---CC
Confidence 58999999 9999999999998774 23344 8888876643321110 112332223223333 38
Q ss_pred cEEEEecCCC----ch-----------HHHHHHhhcccCCCCCEEEcCCCCChHHHHHH
Q psy9637 70 RRVMMLVKAG----SA-----------VDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRR 113 (490)
Q Consensus 70 dvIil~vp~~----~~-----------v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~ 113 (490)
|+||++--.+ .. ++++...+.++-+++.+||-.|| |-++.-.
T Consensus 122 DIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVsN--PvDv~t~ 178 (387)
T TIGR01757 122 DWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGN--PCNTNAL 178 (387)
T ss_pred CEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCC--cHHHHHH
Confidence 9999876332 11 33444556565557778888886 4555443
|
This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized. |
| >PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.047 Score=54.41 Aligned_cols=74 Identities=18% Similarity=0.265 Sum_probs=57.9
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
+++.|||- ..+|.++|..|.++|..|++++.. +.++.+.+.+ +|+||.++.-..-+.
T Consensus 158 k~vvVvGrS~iVGkPla~lL~~~~atVtichs~-------------------T~~l~~~~~~---ADIvI~AvG~~~~i~ 215 (284)
T PRK14170 158 KRAVVIGRSNIVGKPVAQLLLNENATVTIAHSR-------------------TKDLPQVAKE---ADILVVATGLAKFVK 215 (284)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC-------------------CCCHHHHHhh---CCEEEEecCCcCccC
Confidence 57999996 568999999999999999998642 3456677776 999999998764322
Q ss_pred HHHHhhcccCCCCCEEEcCCCCC
Q psy9637 84 DFIDKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 84 ~vl~~l~~~l~~g~iiId~s~~~ 106 (490)
. ..+++|.+|||.|...
T Consensus 216 ---~---~~vk~GavVIDvGin~ 232 (284)
T PRK14170 216 ---K---DYIKPGAIVIDVGMDR 232 (284)
T ss_pred ---H---HHcCCCCEEEEccCcc
Confidence 1 2467999999999754
|
|
| >PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.046 Score=54.87 Aligned_cols=74 Identities=14% Similarity=0.260 Sum_probs=57.8
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
++|.|||- ..+|.+++..|.++|..|++++.. +.++.+.+.+ +|+||+++.-+.-+.
T Consensus 159 k~vvVIGrS~iVGkPla~lL~~~~atVtv~hs~-------------------T~~l~~~~~~---ADIvIsAvGkp~~i~ 216 (297)
T PRK14186 159 KKAVVVGRSILVGKPLALMLLAANATVTIAHSR-------------------TQDLASITRE---ADILVAAAGRPNLIG 216 (297)
T ss_pred CEEEEECCCccchHHHHHHHHHCCCEEEEeCCC-------------------CCCHHHHHhh---CCEEEEccCCcCccC
Confidence 57999995 678999999999999999998642 3466677776 999999998753222
Q ss_pred HHHHhhcccCCCCCEEEcCCCCC
Q psy9637 84 DFIDKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 84 ~vl~~l~~~l~~g~iiId~s~~~ 106 (490)
...+++|.+|||.|...
T Consensus 217 ------~~~ik~gavVIDvGin~ 233 (297)
T PRK14186 217 ------AEMVKPGAVVVDVGIHR 233 (297)
T ss_pred ------HHHcCCCCEEEEecccc
Confidence 12567999999999754
|
|
| >COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.044 Score=55.66 Aligned_cols=125 Identities=18% Similarity=0.264 Sum_probs=74.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHHC--------CCeEE---EEeCChHHHHHHHHcccCCCCeeccCCH-----HHHHhhCC
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDH--------GFTVV---AYNRTTAKVDSFLANEAKGTNIIGAHSL-----EELVKNLK 67 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~--------G~~V~---v~dr~~~~~~~l~~~g~~~~~i~~~~s~-----~e~v~~l~ 67 (490)
.++|+++|+|.+|+.+++-|.++ |.++. +.||+......+.-... ....+++ .+++.. +
T Consensus 3 ~v~v~l~G~G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~-~ 77 (333)
T COG0460 3 TVKVGLLGLGTVGSGVLEILAEKQEELRKRAGIEIRVVAVADRDGSLVRDLDLLNA----EVWTTDGALSLGDEVLLD-E 77 (333)
T ss_pred eEEEEEEccCchhHHHHHHHHHhHHHHHhhcCCceEEEEEEeccchhcccccccch----hhheecccccccHhhhcc-c
Confidence 46899999999999999999875 33433 45676555431110000 1123333 344433 3
Q ss_pred CCcEEEEecCC-CchHHHHHHhhcccCCCCCEEEcCCCCChHHH-HHHHHHHHHcccc-ccccCCCCCcc
Q psy9637 68 KPRRVMMLVKA-GSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDT-DRRSKALEAKGLL-YVGCGVSGGED 134 (490)
Q Consensus 68 ~~dvIil~vp~-~~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~-~~~~~~l~~~gi~-~ld~~vsGg~~ 134 (490)
..|+|+-+++. -...+. ++.+...|+.|..||-.....-... .++.+..++.|.. +..+.|.||.+
T Consensus 78 ~~dvvve~~~~d~~~~~~-~~~~~~al~~GkhVVTaNK~~lA~~~~el~~~A~~~g~~l~yEAtV~gGiP 146 (333)
T COG0460 78 DIDVVVELVGGDVEPAEP-ADLYLKALENGKHVVTANKALLALHYHELREAAEKNGVKLLYEATVGGGIP 146 (333)
T ss_pred cCCEEEecCcccCCchhh-HHHHHHHHHcCCeEECCCchHhHhhHHHHHHHHHHhCCeEEEEeeeccCcc
Confidence 47888888877 445555 6777778889999986544321111 1233444555654 56777777765
|
|
| >PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.19 Score=53.42 Aligned_cols=115 Identities=20% Similarity=0.189 Sum_probs=64.4
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHH----HHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEec--CC
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAK----VDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLV--KA 78 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~----~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~v--p~ 78 (490)
++|.|+|.|.+|.++|+.|++.|++|+++|+++.. .+.+.+.+.. +..-....++... .+|+|+.+- |.
T Consensus 6 k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~~g~~---~~~~~~~~~~~~~--~~d~vV~s~gi~~ 80 (447)
T PRK02472 6 KKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLEEGIK---VICGSHPLELLDE--DFDLMVKNPGIPY 80 (447)
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHHhcCCE---EEeCCCCHHHhcC--cCCEEEECCCCCC
Confidence 57999999999999999999999999999986532 2334443321 2111233343321 268877654 33
Q ss_pred Cch-HHHHHH---------hhcccC-CCCCEEEcCCCCChHHHHHHHHHHHHccccc
Q psy9637 79 GSA-VDDFID---------KLVPLL-EKGDIIIDGGNSEYQDTDRRSKALEAKGLLY 124 (490)
Q Consensus 79 ~~~-v~~vl~---------~l~~~l-~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ 124 (490)
+.+ ++...+ ++...+ ....|-|-+|++.-.++.-+...+...|...
T Consensus 81 ~~~~~~~a~~~~i~v~~~~el~~~~~~~~~I~VTGT~GKTTTt~ll~~iL~~~g~~~ 137 (447)
T PRK02472 81 TNPMVEKALEKGIPIITEVELAYLISEAPIIGITGSNGKTTTTTLIGEMLKAGGQHA 137 (447)
T ss_pred CCHHHHHHHHCCCcEEeHHHHHHHhcCCCEEEEeCCCchHHHHHHHHHHHHHCCCCe
Confidence 222 222211 122122 2234555566665444444446666666443
|
|
| >PLN00141 Tic62-NAD(P)-related group II protein; Provisional | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.041 Score=53.68 Aligned_cols=73 Identities=18% Similarity=0.282 Sum_probs=48.8
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCee---ccCCHHHHHhhC-CCCcEEEEecC
Q psy9637 4 KGDIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNII---GAHSLEELVKNL-KKPRRVMMLVK 77 (490)
Q Consensus 4 ~~~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~---~~~s~~e~v~~l-~~~dvIil~vp 77 (490)
+++|.|+|. |.+|..++..|+++||+|++..|++++...+...+.. ..+. ..+...++.+.+ ..+|+||.+.+
T Consensus 17 ~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~-~~~~~~Dl~d~~~~l~~~~~~~~d~vi~~~g 94 (251)
T PLN00141 17 TKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVDKAKTSLPQDPS-LQIVRADVTEGSDKLVEAIGDDSDAVICATG 94 (251)
T ss_pred CCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHHHHHHhcccCCc-eEEEEeeCCCCHHHHHHHhhcCCCEEEECCC
Confidence 478999995 9999999999999999999999998876554322110 0011 112234444444 45788886654
|
|
| >PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.095 Score=56.12 Aligned_cols=113 Identities=18% Similarity=0.245 Sum_probs=65.8
Q ss_pred CCCcEEEEcccHHHHH-HHHHHHHCCCeEEEEeCChH-HHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEec--CC
Q psy9637 3 AKGDIGLIGLAVMGQN-LILNMNDHGFTVVAYNRTTA-KVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLV--KA 78 (490)
Q Consensus 3 ~~~~IgiIGlG~MG~~-lA~~L~~~G~~V~v~dr~~~-~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~v--p~ 78 (490)
..++|.|||+|..|.+ +|+.|.++|++|+++|.++. ..+.+.+.+.. +....++ +.+. .+|+|+.+- |.
T Consensus 6 ~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~---~~~~~~~-~~~~---~~d~vv~spgi~~ 78 (461)
T PRK00421 6 RIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESAVTQRLLELGAI---IFIGHDA-ENIK---DADVVVYSSAIPD 78 (461)
T ss_pred CCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCChHHHHHHHCCCE---EeCCCCH-HHCC---CCCEEEECCCCCC
Confidence 3468999999999999 89999999999999997643 33345443322 1111222 2233 489888654 22
Q ss_pred Cc-hHHHHH---------Hhhcc-cCC-CCCEEEcCCCCChHHHHHHHHHHHHccc
Q psy9637 79 GS-AVDDFI---------DKLVP-LLE-KGDIIIDGGNSEYQDTDRRSKALEAKGL 122 (490)
Q Consensus 79 ~~-~v~~vl---------~~l~~-~l~-~g~iiId~s~~~~~~~~~~~~~l~~~gi 122 (490)
+. .+.... -+++. .+. ..-|-|-+||+.-.++.-....+...|.
T Consensus 79 ~~~~~~~a~~~~i~i~~~~e~~~~~~~~~~~I~ITGTnGKTTTt~ll~~iL~~~g~ 134 (461)
T PRK00421 79 DNPELVAARELGIPVVRRAEMLAELMRFRTSIAVAGTHGKTTTTSLLAHVLAEAGL 134 (461)
T ss_pred CCHHHHHHHHCCCcEEeHHHHHHHHHccCcEEEEECCCCHHHHHHHHHHHHHhcCC
Confidence 21 222211 12222 222 2346666677765555545577777664
|
|
| >PRK12550 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.038 Score=55.01 Aligned_cols=110 Identities=13% Similarity=0.075 Sum_probs=70.5
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCch--
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGF-TVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSA-- 81 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~-- 81 (490)
.++.|+|.|-.+++++..|++.|. +|+++||++++.+.+.+... .....++ . ...+|+||-++|.+-.
T Consensus 123 ~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la~~~~-------~~~~~~~-~-~~~~dlvINaTp~Gm~~~ 193 (272)
T PRK12550 123 LVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKALAELYG-------YEWRPDL-G-GIEADILVNVTPIGMAGG 193 (272)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhC-------Ccchhhc-c-cccCCEEEECCccccCCC
Confidence 368999999999999999999997 59999999999998876421 1111111 1 1238999999987632
Q ss_pred HHHHHHhh-cccCCCCCEEEcCCCCChHHHHHHHHHHHHcccccc
Q psy9637 82 VDDFIDKL-VPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYV 125 (490)
Q Consensus 82 v~~vl~~l-~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~l 125 (490)
.+.-...+ ...++++.+++|.--.. ..| ...+..+++|...+
T Consensus 194 ~~~~~~pi~~~~l~~~~~v~D~vY~P-~~T-~ll~~A~~~G~~~i 236 (272)
T PRK12550 194 PEADKLAFPEAEIDAASVVFDVVALP-AET-PLIRYARARGKTVI 236 (272)
T ss_pred CccccCCCCHHHcCCCCEEEEeecCC-ccC-HHHHHHHHCcCeEe
Confidence 11000001 12367788999986533 332 33445566665443
|
|
| >cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.052 Score=50.95 Aligned_cols=88 Identities=20% Similarity=0.205 Sum_probs=59.1
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeecc--CC----HHHHHhhCCCCcEEEEecC
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGA--HS----LEELVKNLKKPRRVMMLVK 77 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~--~s----~~e~v~~l~~~dvIil~vp 77 (490)
++|.|||- ..+|.+||..|.++|..|+++|.+.-.. +...+. . +-..+ .+ +.+.+.+ +|+||.+++
T Consensus 63 K~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~--~~~~~~-~-~hs~t~~~~~~~~l~~~~~~---ADIVIsAvG 135 (197)
T cd01079 63 KTITIINRSEVVGRPLAALLANDGARVYSVDINGIQV--FTRGES-I-RHEKHHVTDEEAMTLDCLSQ---SDVVITGVP 135 (197)
T ss_pred CEEEEECCCccchHHHHHHHHHCCCEEEEEecCcccc--cccccc-c-ccccccccchhhHHHHHhhh---CCEEEEccC
Confidence 57999996 5689999999999999999998653321 111000 0 00001 12 4555555 999999998
Q ss_pred CCch-HHHHHHhhcccCCCCCEEEcCCCC
Q psy9637 78 AGSA-VDDFIDKLVPLLEKGDIIIDGGNS 105 (490)
Q Consensus 78 ~~~~-v~~vl~~l~~~l~~g~iiId~s~~ 105 (490)
.... +. ...+++|.+|||.|..
T Consensus 136 ~~~~~i~------~d~ik~GavVIDVGi~ 158 (197)
T cd01079 136 SPNYKVP------TELLKDGAICINFASI 158 (197)
T ss_pred CCCCccC------HHHcCCCcEEEEcCCC
Confidence 8643 22 1246799999999975
|
The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional |
| >PRK00676 hemA glutamyl-tRNA reductase; Validated | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.042 Score=56.14 Aligned_cols=34 Identities=12% Similarity=0.360 Sum_probs=31.4
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-eEEEEeCChH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGF-TVVAYNRTTA 38 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~ 38 (490)
++|-|||+|.||...+++|.++|. +|++.||+..
T Consensus 175 k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~ 209 (338)
T PRK00676 175 ASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQL 209 (338)
T ss_pred CEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCcc
Confidence 589999999999999999999995 6999999974
|
|
| >PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.048 Score=54.21 Aligned_cols=74 Identities=20% Similarity=0.380 Sum_probs=58.1
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
+++.|||- ..+|.+++..|.++|..|++++.. +.++.+.+.+ +|+||.++.-+.-+.
T Consensus 159 k~vvViGrS~~VGkPla~lL~~~~AtVt~chs~-------------------T~~l~~~~~~---ADIvIsAvGkp~~i~ 216 (278)
T PRK14172 159 KEVVVIGRSNIVGKPVAQLLLNENATVTICHSK-------------------TKNLKEVCKK---ADILVVAIGRPKFID 216 (278)
T ss_pred CEEEEECCCccchHHHHHHHHHCCCEEEEeCCC-------------------CCCHHHHHhh---CCEEEEcCCCcCccC
Confidence 57999995 678999999999999999999742 3466777776 999999998764322
Q ss_pred HHHHhhcccCCCCCEEEcCCCCC
Q psy9637 84 DFIDKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 84 ~vl~~l~~~l~~g~iiId~s~~~ 106 (490)
. ..+++|.+|||.|...
T Consensus 217 ---~---~~ik~gavVIDvGin~ 233 (278)
T PRK14172 217 ---E---EYVKEGAIVIDVGTSS 233 (278)
T ss_pred ---H---HHcCCCcEEEEeeccc
Confidence 1 2467999999998643
|
|
| >PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.047 Score=56.35 Aligned_cols=95 Identities=12% Similarity=0.253 Sum_probs=59.6
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHc--cc------CC--CCeec-cCCHHHHHhhCCCCc
Q psy9637 4 KGDIGLIG-LAVMGQNLILNMNDHGF-TVVAYNRTTAKVDSFLAN--EA------KG--TNIIG-AHSLEELVKNLKKPR 70 (490)
Q Consensus 4 ~~~IgiIG-lG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~--g~------~~--~~i~~-~~s~~e~v~~l~~~d 70 (490)
++||+|+| .|.+|..+.+.|.++.. +++.+.++++...+.... .. .. ..+.. ..+++++ . ++|
T Consensus 3 ~~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~---~~D 78 (349)
T PRK08664 3 KLKVGILGATGMVGQRFVQLLANHPWFEVTALAASERSAGKTYGEAVRWQLDGPIPEEVADMEVVSTDPEAV-D---DVD 78 (349)
T ss_pred CcEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcChhhcCCcccccccccccccccccccceEEEeCCHHHh-c---CCC
Confidence 57999998 89999999999997754 888776665443321110 00 00 01111 2244443 3 389
Q ss_pred EEEEecCCCchHHHHHHhhcccCCCCCEEEcCCCCC
Q psy9637 71 RVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 71 vIil~vp~~~~v~~vl~~l~~~l~~g~iiId~s~~~ 106 (490)
+|+.++|.+ ...++.+.+. ..|..+||.|...
T Consensus 79 vVf~a~p~~-~s~~~~~~~~---~~G~~vIDls~~f 110 (349)
T PRK08664 79 IVFSALPSD-VAGEVEEEFA---KAGKPVFSNASAH 110 (349)
T ss_pred EEEEeCChh-HHHHHHHHHH---HCCCEEEECCchh
Confidence 999999996 4455544432 3678899998754
|
|
| >PRK05690 molybdopterin biosynthesis protein MoeB; Provisional | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.073 Score=52.17 Aligned_cols=121 Identities=15% Similarity=0.185 Sum_probs=69.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHcccC-CCCe--eccCCHHHHHhhCCCCcEEEEecCCC
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGF-TVVAYNRTTAKVDSFLANEAK-GTNI--IGAHSLEELVKNLKKPRRVMMLVKAG 79 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~g~~-~~~i--~~~~s~~e~v~~l~~~dvIil~vp~~ 79 (490)
..+|.|||+|..|..++.+|+..|. +++++|.+.-....+...... ...+ .-+....+.+.++ .|++-+...+..
T Consensus 32 ~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~l-np~v~i~~~~~~ 110 (245)
T PRK05690 32 AARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARI-NPHIAIETINAR 110 (245)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHH-CCCCEEEEEecc
Confidence 3589999999999999999999996 788888764332222211100 0000 0122222333322 256666666543
Q ss_pred chHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCC
Q psy9637 80 SAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVS 130 (490)
Q Consensus 80 ~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vs 130 (490)
...+-+.+ .++.-|+|||+.-. +..-....+.+.+.++.|+.+.+.
T Consensus 111 -i~~~~~~~---~~~~~DiVi~~~D~-~~~r~~ln~~~~~~~ip~v~~~~~ 156 (245)
T PRK05690 111 -LDDDELAA---LIAGHDLVLDCTDN-VATRNQLNRACFAAKKPLVSGAAI 156 (245)
T ss_pred -CCHHHHHH---HHhcCCEEEecCCC-HHHHHHHHHHHHHhCCEEEEeeec
Confidence 22222222 34456899999764 343333446777788888876554
|
|
| >PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.053 Score=54.00 Aligned_cols=74 Identities=14% Similarity=0.333 Sum_probs=58.1
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
+++.|||- ..+|.++|..|.++|..|++++.. +.++++...+ +|+||.++.-..-+.
T Consensus 160 k~vvViGrS~iVGkPla~lL~~~~atVt~chs~-------------------T~~l~~~~~~---ADIvIsAvGk~~~i~ 217 (284)
T PRK14177 160 KNAVVVGRSPILGKPMAMLLTEMNATVTLCHSK-------------------TQNLPSIVRQ---ADIIVGAVGKPEFIK 217 (284)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC-------------------CCCHHHHHhh---CCEEEEeCCCcCccC
Confidence 57999995 678999999999999999998742 3456667776 999999998764322
Q ss_pred HHHHhhcccCCCCCEEEcCCCCC
Q psy9637 84 DFIDKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 84 ~vl~~l~~~l~~g~iiId~s~~~ 106 (490)
...+++|.+|||.|...
T Consensus 218 ------~~~ik~gavVIDvGin~ 234 (284)
T PRK14177 218 ------ADWISEGAVLLDAGYNP 234 (284)
T ss_pred ------HHHcCCCCEEEEecCcc
Confidence 12467999999999754
|
|
| >PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.041 Score=54.74 Aligned_cols=73 Identities=14% Similarity=0.218 Sum_probs=56.4
Q ss_pred CcEEEEccc-HHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 5 GDIGLIGLA-VMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 5 ~~IgiIGlG-~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
.++.|||-+ ..|.++|..|...|..|++++++. .++.+.+.. +|+||.+++-..-+.
T Consensus 153 k~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t-------------------~~L~~~~~~---ADIvI~Avgk~~lv~ 210 (279)
T PRK14178 153 KRAVVVGRSIDVGRPMAALLLNADATVTICHSKT-------------------ENLKAELRQ---ADILVSAAGKAGFIT 210 (279)
T ss_pred CEEEEECCCccccHHHHHHHHhCCCeeEEEecCh-------------------hHHHHHHhh---CCEEEECCCcccccC
Confidence 579999998 999999999999999999988653 244555555 899999997542221
Q ss_pred HHHHhhcccCCCCCEEEcCCCC
Q psy9637 84 DFIDKLVPLLEKGDIIIDGGNS 105 (490)
Q Consensus 84 ~vl~~l~~~l~~g~iiId~s~~ 105 (490)
.+. +++|.+|||.+..
T Consensus 211 ---~~~---vk~GavVIDVgi~ 226 (279)
T PRK14178 211 ---PDM---VKPGATVIDVGIN 226 (279)
T ss_pred ---HHH---cCCCcEEEEeecc
Confidence 222 5899999999864
|
|
| >PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.13 Score=54.76 Aligned_cols=125 Identities=15% Similarity=0.188 Sum_probs=68.6
Q ss_pred CCCCCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChH--HHHHHHHc--ccCCCCeec-cCCHHHHHhhCCCCcEEEEe
Q psy9637 1 MAAKGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTA--KVDSFLAN--EAKGTNIIG-AHSLEELVKNLKKPRRVMML 75 (490)
Q Consensus 1 M~~~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~--~~~~l~~~--g~~~~~i~~-~~s~~e~v~~l~~~dvIil~ 75 (490)
|+..-.|.|||+|..|.++|+.|.+.|++|+++|..+. ..+.+.+. +.. +.. ..++ +.+.. +|+|+.+
T Consensus 3 ~~~~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~l~~~~~g~~---~~~~~~~~-~~~~~---~d~vV~s 75 (448)
T PRK03803 3 MQSDGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSREQPPGLDTLAREFPDVE---LRCGGFDC-ELLVQ---ASEIIIS 75 (448)
T ss_pred cccCCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCCCchhHHHHHhhcCCcE---EEeCCCCh-HHhcC---CCEEEEC
Confidence 44334699999999999999999999999999997543 22334432 221 111 1233 33333 7887764
Q ss_pred c--CCCch-HHHHH---------Hhhccc-CCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCCC
Q psy9637 76 V--KAGSA-VDDFI---------DKLVPL-LEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGG 132 (490)
Q Consensus 76 v--p~~~~-v~~vl---------~~l~~~-l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg 132 (490)
- |.+.+ +.... -+++.. +...-|-|-+||+.-.++.-+...+...|..+.-.+..|.
T Consensus 76 p~i~~~~p~~~~a~~~~i~i~~~~el~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g~~~~~ggnig~ 145 (448)
T PRK03803 76 PGLALDTPALRAAAAMGIEVIGDIELFAREAKAPVIAITGSNGKSTVTTLVGEMAKAAGKRVAVGGNIGT 145 (448)
T ss_pred CCCCCCCHHHHHHHHCCCcEEEHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhcCCCeEEecCcCH
Confidence 3 22222 22111 122222 2223355556666544444444777777765444444333
|
|
| >TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.13 Score=51.49 Aligned_cols=114 Identities=15% Similarity=0.062 Sum_probs=76.6
Q ss_pred CCCcEEEEc-ccHHHHHHHHHHHHCCCeEEEEeCChHH-HHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCc
Q psy9637 3 AKGDIGLIG-LAVMGQNLILNMNDHGFTVVAYNRTTAK-VDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGS 80 (490)
Q Consensus 3 ~~~~IgiIG-lG~MG~~lA~~L~~~G~~V~v~dr~~~~-~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~ 80 (490)
.+.+|.|.| .|.+|..+-.+|...|++ .++..+|.+ .+.+ ..+..+.++.|+.+.. .+|+.++++|..
T Consensus 5 ~~~~~~~~g~~~~~~~~~~~~~~~~g~~-~v~~V~p~~~~~~v-------~G~~~y~sv~dlp~~~-~~Dlavi~vpa~- 74 (286)
T TIGR01019 5 KDTKVIVQGITGSQGSFHTEQMLAYGTN-IVGGVTPGKGGTTV-------LGLPVFDSVKEAVEET-GANASVIFVPAP- 74 (286)
T ss_pred CCCcEEEecCCcHHHHHHHHHHHhCCCC-EEEEECCCCCccee-------cCeeccCCHHHHhhcc-CCCEEEEecCHH-
Confidence 356899999 599999999999999999 677766652 1111 1234688999987742 269999999994
Q ss_pred hHHHHHHhhcccCCCCCEEEcCCCCChHH-HHHHHHHHHHccccccccC
Q psy9637 81 AVDDFIDKLVPLLEKGDIIIDGGNSEYQD-TDRRSKALEAKGLLYVGCG 128 (490)
Q Consensus 81 ~v~~vl~~l~~~l~~g~iiId~s~~~~~~-~~~~~~~l~~~gi~~ld~~ 128 (490)
.+.++++++...--+..+|+- ...++. .+++.+..++.|++++..-
T Consensus 75 ~v~~~l~e~~~~Gvk~avIis--~Gf~e~~~~~l~~~a~~~girilGPN 121 (286)
T TIGR01019 75 FAADAIFEAIDAGIELIVCIT--EGIPVHDMLKVKRYMEESGTRLIGPN 121 (286)
T ss_pred HHHHHHHHHHHCCCCEEEEEC--CCCCHHHHHHHHHHHHHcCCEEECCC
Confidence 777788777653223333332 223333 2344577777788887643
|
ATP citrate lyases appear to form an outgroup. |
| >PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.15 Score=55.29 Aligned_cols=67 Identities=15% Similarity=0.161 Sum_probs=44.5
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChH--HHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEe
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTA--KVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMML 75 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~--~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~ 75 (490)
++|.|+|+|..|.++|+.|.+.|++|+++|.... ..+.+.+.+. +.++..-....+.+.. +|+||.+
T Consensus 8 ~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~L~~~~~-~~~~~~g~~~~~~~~~---~d~vv~s 76 (498)
T PRK02006 8 PMVLVLGLGESGLAMARWCARHGARLRVADTREAPPNLAALRAELP-DAEFVGGPFDPALLDG---VDLVALS 76 (498)
T ss_pred CEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCCCchhHHHHHhhcC-CcEEEeCCCchhHhcC---CCEEEEC
Confidence 5799999999999999999999999999997542 3344444321 1112111122333444 8988886
|
|
| >PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.054 Score=53.96 Aligned_cols=74 Identities=22% Similarity=0.329 Sum_probs=57.6
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
++|.|||- ..+|.++|..|.++|..|++++.. +.++.+.+.+ +|+||.++.-+.-+.
T Consensus 157 k~vvViGrS~iVGkPla~lL~~~~atVtichs~-------------------T~~l~~~~~~---ADIvI~AvG~p~~i~ 214 (282)
T PRK14169 157 KRVVIVGRSNIVGRPLAGLMVNHDATVTIAHSK-------------------TRNLKQLTKE---ADILVVAVGVPHFIG 214 (282)
T ss_pred CEEEEECCCccchHHHHHHHHHCCCEEEEECCC-------------------CCCHHHHHhh---CCEEEEccCCcCccC
Confidence 57999995 678999999999999999998632 3456666776 999999998764322
Q ss_pred HHHHhhcccCCCCCEEEcCCCCC
Q psy9637 84 DFIDKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 84 ~vl~~l~~~l~~g~iiId~s~~~ 106 (490)
. ..+++|.+|||.|...
T Consensus 215 ---~---~~vk~GavVIDvGin~ 231 (282)
T PRK14169 215 ---A---DAVKPGAVVIDVGISR 231 (282)
T ss_pred ---H---HHcCCCcEEEEeeccc
Confidence 1 2467999999999743
|
|
| >PRK14852 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.055 Score=62.13 Aligned_cols=123 Identities=15% Similarity=0.166 Sum_probs=74.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHcc-cCCCCe--eccCCHHHHHhhCCCCcEEEEecCCC
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGF-TVVAYNRTTAKVDSFLANE-AKGTNI--IGAHSLEELVKNLKKPRRVMMLVKAG 79 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~g-~~~~~i--~~~~s~~e~v~~l~~~dvIil~vp~~ 79 (490)
..+|+|||+|-.|..++.+|+..|. ++++.|-+.=....+..+. .....+ .-+...++.+..+ .|++=|.+.+..
T Consensus 332 ~srVlVvGlGGlGs~ia~~LAraGVG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaevaa~~l~~I-NP~v~I~~~~~~ 410 (989)
T PRK14852 332 RSRVAIAGLGGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVMTERALSV-NPFLDIRSFPEG 410 (989)
T ss_pred cCcEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEecccccccccCCChhhCCChHHHHHHHHHHHH-CCCCeEEEEecC
Confidence 3689999999999999999999997 5777776533222222211 000000 0122333334333 267777777664
Q ss_pred chHHHHHHhhcccCCCCCEEEcCCCCChHHHH-HHHHHHHHccccccccCCCC
Q psy9637 80 SAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTD-RRSKALEAKGLLYVGCGVSG 131 (490)
Q Consensus 80 ~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~-~~~~~l~~~gi~~ld~~vsG 131 (490)
..++.+++++ +.=|+|||+......+.. ...+.+.+.++.++.+++.|
T Consensus 411 -I~~en~~~fl---~~~DiVVDa~D~~~~~~rr~l~~~c~~~~IP~I~ag~~G 459 (989)
T PRK14852 411 -VAAETIDAFL---KDVDLLVDGIDFFALDIRRRLFNRALELGIPVITAGPLG 459 (989)
T ss_pred -CCHHHHHHHh---hCCCEEEECCCCccHHHHHHHHHHHHHcCCCEEEeeccc
Confidence 3344444443 355899999875443343 33366778899988887655
|
|
| >PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.054 Score=53.95 Aligned_cols=74 Identities=16% Similarity=0.259 Sum_probs=57.3
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
++|.|||- ..+|.++|..|.++|..|++++.. +.++.+..+. +|+||.++.-+.-+.
T Consensus 159 k~vvViGrS~~VGkPla~lL~~~~ATVt~chs~-------------------T~dl~~~~k~---ADIvIsAvGkp~~i~ 216 (282)
T PRK14180 159 AYAVVVGASNVVGKPVSQLLLNAKATVTTCHRF-------------------TTDLKSHTTK---ADILIVAVGKPNFIT 216 (282)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEEcCC-------------------CCCHHHHhhh---cCEEEEccCCcCcCC
Confidence 57999995 678999999999999999998743 3456666666 999999998764322
Q ss_pred HHHHhhcccCCCCCEEEcCCCCC
Q psy9637 84 DFIDKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 84 ~vl~~l~~~l~~g~iiId~s~~~ 106 (490)
. ..+++|.+|||.|...
T Consensus 217 ~------~~vk~gavVIDvGin~ 233 (282)
T PRK14180 217 A------DMVKEGAVVIDVGINH 233 (282)
T ss_pred H------HHcCCCcEEEEecccc
Confidence 1 2467999999998643
|
|
| >PRK05678 succinyl-CoA synthetase subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.095 Score=52.64 Aligned_cols=116 Identities=16% Similarity=0.056 Sum_probs=75.1
Q ss_pred CCCcEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChHH-HHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCc
Q psy9637 3 AKGDIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTAK-VDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGS 80 (490)
Q Consensus 3 ~~~~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~~-~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~ 80 (490)
.+.||.|.|. |.+|..+..+|.+.|++ .+|=.||.. .+.+ ..+..+.+++|+.+.. .+|+.+++||..
T Consensus 7 ~~~~~~v~~~~~~~g~~~l~~l~~~g~~-~v~pVnp~~~~~~v-------~G~~~y~sv~dlp~~~-~~DlAvi~vp~~- 76 (291)
T PRK05678 7 KDTKVIVQGITGKQGTFHTEQMLAYGTN-IVGGVTPGKGGTTV-------LGLPVFNTVAEAVEAT-GANASVIYVPPP- 76 (291)
T ss_pred CCCeEEEeCCCchHHHHHHHHHHHCCCC-EEEEECCCCCCCeE-------eCeeccCCHHHHhhcc-CCCEEEEEcCHH-
Confidence 4578999996 88999999999999997 555444331 1111 1234678888887631 269999999994
Q ss_pred hHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCC
Q psy9637 81 AVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGV 129 (490)
Q Consensus 81 ~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~v 129 (490)
.+-++++++...--+..+|+-.+ -..++.+++.+.+++.|++++..--
T Consensus 77 ~v~~~l~e~~~~gvk~avI~s~G-f~~~~~~~l~~~a~~~girvlGPNc 124 (291)
T PRK05678 77 FAADAILEAIDAGIDLIVCITEG-IPVLDMLEVKAYLERKKTRLIGPNC 124 (291)
T ss_pred HHHHHHHHHHHCCCCEEEEECCC-CCHHHHHHHHHHHHHcCCEEECCCC
Confidence 77777777765322333443332 2222233555777788988876543
|
|
| >PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.16 Score=54.25 Aligned_cols=43 Identities=19% Similarity=0.223 Sum_probs=35.9
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcc
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANE 47 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g 47 (490)
++|.|||+|..|.+.|..|.+.|++|+++|..+.....+.+.|
T Consensus 10 ~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~l~~~g 52 (460)
T PRK01390 10 KTVAVFGLGGSGLATARALVAGGAEVIAWDDNPASRAKAAAAG 52 (460)
T ss_pred CEEEEEeecHhHHHHHHHHHHCCCEEEEECCChhhHHHHHhcC
Confidence 5799999999999999999999999999998765554454434
|
|
| >PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.056 Score=53.82 Aligned_cols=74 Identities=16% Similarity=0.297 Sum_probs=57.8
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
+++.|||- ..+|.++|..|.++|..|++++.. +.++++.+.+ +|+||.++.-+.-+.
T Consensus 158 k~vvVvGrS~iVGkPla~lL~~~~atVt~chs~-------------------T~nl~~~~~~---ADIvIsAvGkp~~i~ 215 (282)
T PRK14166 158 KDAVIIGASNIVGRPMATMLLNAGATVSVCHIK-------------------TKDLSLYTRQ---ADLIIVAAGCVNLLR 215 (282)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC-------------------CCCHHHHHhh---CCEEEEcCCCcCccC
Confidence 57999995 678999999999999999998753 3456667776 999999998764322
Q ss_pred HHHHhhcccCCCCCEEEcCCCCC
Q psy9637 84 DFIDKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 84 ~vl~~l~~~l~~g~iiId~s~~~ 106 (490)
. ..+++|.+|||.|...
T Consensus 216 ---~---~~vk~GavVIDvGin~ 232 (282)
T PRK14166 216 ---S---DMVKEGVIVVDVGINR 232 (282)
T ss_pred ---H---HHcCCCCEEEEecccc
Confidence 1 2467999999999653
|
|
| >cd00704 MDH Malate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.039 Score=56.32 Aligned_cols=102 Identities=11% Similarity=0.117 Sum_probs=59.9
Q ss_pred cEEEEcc-cHHHHHHHHHHHHCCC-------eEEEEeCCh--HHHHHHHHcccC-----CCCeeccCCHHHHHhhCCCCc
Q psy9637 6 DIGLIGL-AVMGQNLILNMNDHGF-------TVVAYNRTT--AKVDSFLANEAK-----GTNIIGAHSLEELVKNLKKPR 70 (490)
Q Consensus 6 ~IgiIGl-G~MG~~lA~~L~~~G~-------~V~v~dr~~--~~~~~l~~~g~~-----~~~i~~~~s~~e~v~~l~~~d 70 (490)
||+|||+ |.+|..++..|+..|. ++.++|+++ ++.+.....-.. ........+..+.++ .+|
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~---~aD 78 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFK---DVD 78 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhC---CCC
Confidence 7999999 9999999999997663 599999987 543321110000 001112233334444 499
Q ss_pred EEEEecCCC----ch-----------HHHHHHhhcccCCCCCEEEcCCCCChHHHHH
Q psy9637 71 RVMMLVKAG----SA-----------VDDFIDKLVPLLEKGDIIIDGGNSEYQDTDR 112 (490)
Q Consensus 71 vIil~vp~~----~~-----------v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~ 112 (490)
+|+++--.+ .. ++++...+.++-+++.++|-.|| |-+...
T Consensus 79 iVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsN--PvD~~t 133 (323)
T cd00704 79 VAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGN--PANTNA 133 (323)
T ss_pred EEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeCC--cHHHHH
Confidence 999876332 11 33444555555446667777765 455443
|
Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2 | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.16 Score=49.93 Aligned_cols=115 Identities=12% Similarity=0.080 Sum_probs=70.7
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEE-EEe----------CChHHHHHHHH---c-cc--CC--C---CeeccCCHHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVV-AYN----------RTTAKVDSFLA---N-EA--KG--T---NIIGAHSLEEL 62 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~-v~d----------r~~~~~~~l~~---~-g~--~~--~---~i~~~~s~~e~ 62 (490)
.+|.|.|.|++|...|+.|.+.|..|+ +.| .+.+.++.+.+ . +. .. . ..+ .-+++++
T Consensus 39 ~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~~~~~~~~~a~-~~~~~~~ 117 (254)
T cd05313 39 KRVAISGSGNVAQYAAEKLLELGAKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVSEYAKKYGTAK-YFEGKKP 117 (254)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHhhcCCCCE-EeCCcch
Confidence 589999999999999999999999988 545 23444433221 1 10 00 0 011 1244444
Q ss_pred HhhCCCCcEEEEecCCCchHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccc
Q psy9637 63 VKNLKKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVG 126 (490)
Q Consensus 63 v~~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld 126 (490)
... ++|+.+-|--.+....+.+..|.. .+=++|+...|... +.+..+.|.++|+.|+.
T Consensus 118 ~~~--~~DIliPcAl~~~I~~~na~~i~~--~~ak~I~EgAN~p~--t~~a~~~L~~rGI~vvP 175 (254)
T cd05313 118 WEV--PCDIAFPCATQNEVDAEDAKLLVK--NGCKYVAEGANMPC--TAEAIEVFRQAGVLFAP 175 (254)
T ss_pred hcC--CCcEEEeccccccCCHHHHHHHHH--cCCEEEEeCCCCCC--CHHHHHHHHHCCcEEEC
Confidence 432 489888665554334444444432 13468888888653 33566888999998863
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t |
| >PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.058 Score=54.00 Aligned_cols=74 Identities=20% Similarity=0.298 Sum_probs=58.0
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
++|.|||- ..+|.+++..|.++|..|++++.. +.++.+.+.+ +|+||.++.-+.-+.
T Consensus 161 k~vvViGrS~iVGkPla~lL~~~~aTVt~chs~-------------------T~~l~~~~~~---ADIvVsAvGkp~~i~ 218 (294)
T PRK14187 161 SDAVVIGRSNIVGKPMACLLLGENCTVTTVHSA-------------------TRDLADYCSK---ADILVAAVGIPNFVK 218 (294)
T ss_pred CEEEEECCCccchHHHHHHHhhCCCEEEEeCCC-------------------CCCHHHHHhh---CCEEEEccCCcCccC
Confidence 57999995 678999999999999999998753 3456677776 999999998764322
Q ss_pred HHHHhhcccCCCCCEEEcCCCCC
Q psy9637 84 DFIDKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 84 ~vl~~l~~~l~~g~iiId~s~~~ 106 (490)
. ..+++|.+|||.|...
T Consensus 219 ~------~~ik~gaiVIDVGin~ 235 (294)
T PRK14187 219 Y------SWIKKGAIVIDVGINS 235 (294)
T ss_pred H------HHcCCCCEEEEecccc
Confidence 1 2467999999998653
|
|
| >PRK14030 glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.079 Score=56.08 Aligned_cols=115 Identities=16% Similarity=0.102 Sum_probs=73.3
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEE--------Ee---CChHHHHHHHHcccCCC-----------CeeccCCHHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVA--------YN---RTTAKVDSFLANEAKGT-----------NIIGAHSLEEL 62 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v--------~d---r~~~~~~~l~~~g~~~~-----------~i~~~~s~~e~ 62 (490)
.+|.|-|+|++|...|+.|.+.|..|++ || .+.++++.+.+...... ..+.. +.+++
T Consensus 229 ~~vaIQGfGnVG~~aA~~L~e~GakvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~ga~~i-~~~~~ 307 (445)
T PRK14030 229 KTVAISGFGNVAWGAATKATELGAKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPYAEKFPGSTFF-AGKKP 307 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHHHHhcCCCCEEc-CCccc
Confidence 5899999999999999999999999998 89 77777443332110000 00111 22333
Q ss_pred HhhCCCCcEEEEecCCCchHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccc
Q psy9637 63 VKNLKKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVG 126 (490)
Q Consensus 63 v~~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld 126 (490)
... ++|+.+-|--.+....+.++.|... +=++|+...|. | .+.+..+.+.++||.|+.
T Consensus 308 ~~~--~cDVliPcAl~n~I~~~na~~l~~~--~ak~V~EgAN~-p-~t~eA~~iL~~rGI~~vP 365 (445)
T PRK14030 308 WEQ--KVDIALPCATQNELNGEDADKLIKN--GVLCVAEVSNM-G-CTAEAIDKFIAAKQLFAP 365 (445)
T ss_pred eec--cccEEeeccccccCCHHHHHHHHHc--CCeEEEeCCCC-C-CCHHHHHHHHHCCCEEeC
Confidence 321 3788876655444444444444321 34789999997 4 455666888999998763
|
|
| >PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.12 Score=56.40 Aligned_cols=110 Identities=19% Similarity=0.196 Sum_probs=69.4
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhC-CCCcEEEEecCCCchH-
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNL-KKPRRVMMLVKAGSAV- 82 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l-~~~dvIil~vp~~~~v- 82 (490)
+++-|+|.|-+|.+++..|++.|++|+++||+.++.+.+.+.... .. .+..+..+.+ ..+|+|+-++|.+-.-
T Consensus 380 k~vlIlGaGGagrAia~~L~~~G~~V~i~nR~~e~a~~la~~l~~--~~---~~~~~~~~~~~~~~diiINtT~vGm~~~ 454 (529)
T PLN02520 380 KLFVVIGAGGAGKALAYGAKEKGARVVIANRTYERAKELADAVGG--QA---LTLADLENFHPEEGMILANTTSVGMQPN 454 (529)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCC--ce---eeHhHhhhhccccCeEEEecccCCCCCC
Confidence 468899999999999999999999999999999998888754211 11 1223222111 1267888777766321
Q ss_pred -HH-HHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccc
Q psy9637 83 -DD-FIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLL 123 (490)
Q Consensus 83 -~~-vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~ 123 (490)
+. -+. ...+++..+++|.--.. ..| ...+..+++|..
T Consensus 455 ~~~~pl~--~~~l~~~~~v~D~vY~P-~~T-~ll~~A~~~G~~ 493 (529)
T PLN02520 455 VDETPIS--KHALKHYSLVFDAVYTP-KIT-RLLREAEESGAI 493 (529)
T ss_pred CCCCccc--HhhCCCCCEEEEeccCC-CcC-HHHHHHHHCCCe
Confidence 11 011 12366788999996543 332 233445556643
|
|
| >PRK05993 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.057 Score=53.45 Aligned_cols=45 Identities=24% Similarity=0.305 Sum_probs=38.0
Q ss_pred CCCCCcEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q psy9637 1 MAAKGDIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLA 45 (490)
Q Consensus 1 M~~~~~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~ 45 (490)
|+++++|-|.|. |.+|..+|+.|++.|++|++.+|++++.+.+.+
T Consensus 1 m~~~k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~~~~~~l~~ 46 (277)
T PRK05993 1 MDMKRSILITGCSSGIGAYCARALQSDGWRVFATCRKEEDVAALEA 46 (277)
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 554456888886 999999999999999999999999888776653
|
|
| >PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.14 Score=58.91 Aligned_cols=115 Identities=16% Similarity=0.164 Sum_probs=66.5
Q ss_pred CCCCCcEEEEcccHHHHHH-HHHHHHCCCeEEEEeCChH-HHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEec--
Q psy9637 1 MAAKGDIGLIGLAVMGQNL-ILNMNDHGFTVVAYNRTTA-KVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLV-- 76 (490)
Q Consensus 1 M~~~~~IgiIGlG~MG~~l-A~~L~~~G~~V~v~dr~~~-~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~v-- 76 (490)
|+.+++|.|||+|..|.+. |+-|.+.|++|+++|.++. ..+.+.+.|.. +. .....+.+. .+|+|+.+-
T Consensus 1 ~~~~~~i~viG~G~sG~salA~~L~~~G~~V~~sD~~~~~~~~~L~~~gi~---~~-~g~~~~~~~---~~d~vV~SpgI 73 (809)
T PRK14573 1 MMKSLFYHFIGIGGIGMSALAHILLDRGYSVSGSDLSEGKTVEKLKAKGAR---FF-LGHQEEHVP---EDAVVVYSSSI 73 (809)
T ss_pred CCCcceEEEEEecHHhHHHHHHHHHHCCCeEEEECCCCChHHHHHHHCCCE---Ee-CCCCHHHcC---CCCEEEECCCc
Confidence 5555679999999999886 9999999999999997542 34445544432 21 112223333 378887652
Q ss_pred CCCc-hHHHHH---------HhhcccCCC--CCEEEcCCCCChHHHHHHHHHHHHccc
Q psy9637 77 KAGS-AVDDFI---------DKLVPLLEK--GDIIIDGGNSEYQDTDRRSKALEAKGL 122 (490)
Q Consensus 77 p~~~-~v~~vl---------~~l~~~l~~--g~iiId~s~~~~~~~~~~~~~l~~~gi 122 (490)
|.+. .+.... -+++..+.+ ..|-|-+||+.-.++.-+...+...|.
T Consensus 74 ~~~~p~~~~a~~~gi~v~~~~el~~~~~~~~~~IaITGTnGKTTTt~li~~iL~~~g~ 131 (809)
T PRK14573 74 SKDNVEYLSAKSRGNRLVHRAELLAELMQEQISILVSGSHGKTTVSSLITAIFQEAKK 131 (809)
T ss_pred CCCCHHHHHHHHCCCcEEeHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHHhCCC
Confidence 2221 122211 122222222 246666667665444444477776664
|
|
| >PRK08374 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.13 Score=52.82 Aligned_cols=125 Identities=16% Similarity=0.223 Sum_probs=69.1
Q ss_pred CcEEEEcccHHHHHHHHHHHH--------CCC--eEE-EEeCCh----------HHHHHHHHcccCCCCee-----ccCC
Q psy9637 5 GDIGLIGLAVMGQNLILNMND--------HGF--TVV-AYNRTT----------AKVDSFLANEAKGTNII-----GAHS 58 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~--------~G~--~V~-v~dr~~----------~~~~~l~~~g~~~~~i~-----~~~s 58 (490)
++|+|+|+|.+|..+++.|.+ .|. +|+ +.|++. ++.....+.......+. ...+
T Consensus 3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~~~~~ 82 (336)
T PRK08374 3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEVYNFS 82 (336)
T ss_pred eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccccCCC
Confidence 689999999999999998877 463 433 446442 22222222111100010 0126
Q ss_pred HHHHHhhCCCCcEEEEecCCCchHHHHHHhhcccCCCCCEEEcCCCCCh-HHHHHHHHHHHHcccccc-ccCCCCCcc
Q psy9637 59 LEELVKNLKKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEY-QDTDRRSKALEAKGLLYV-GCGVSGGED 134 (490)
Q Consensus 59 ~~e~v~~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~s~~~~-~~~~~~~~~l~~~gi~~l-d~~vsGg~~ 134 (490)
+.++++.. .+|+||-+++. ....+++.. .+..|.-||-.++..- ..-.++.+..+++|..++ .+.+++|.+
T Consensus 83 ~~ell~~~-~~DVvVd~t~~-~~a~~~~~~---al~~G~~VVtanK~~la~~~~el~~la~~~~~~~~~ea~v~~GiP 155 (336)
T PRK08374 83 PEEIVEEI-DADIVVDVTND-KNAHEWHLE---ALKEGKSVVTSNKPPIAFHYDELLDLANERNLPYLFEATVMAGTP 155 (336)
T ss_pred HHHHHhcC-CCCEEEECCCc-HHHHHHHHH---HHhhCCcEEECCHHHHHhCHHHHHHHHHHcCCeEEEeccccccCC
Confidence 77777533 38999988855 345555443 4557888887766311 112233334445666544 555776665
|
|
| >PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.66 Score=45.64 Aligned_cols=108 Identities=18% Similarity=0.149 Sum_probs=80.6
Q ss_pred CeeccCCHHHHHhhCCCCcEEEEecCCCchHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccc---ccccC
Q psy9637 52 NIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLL---YVGCG 128 (490)
Q Consensus 52 ~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~---~ld~~ 128 (490)
+++.++|-.|+++. +|++|+-+|-+...-.+++.+++.+++|.+|.+.-|+++....+..+.+.++.+. |-.+.
T Consensus 128 GvkVtsDD~EAvk~---aei~I~ftPfG~~t~~Iikki~~~ipEgAII~~tCTIpt~~ly~~le~l~R~DvgIsS~HPaa 204 (342)
T PRK00961 128 GLKVTTDDREAVAD---ADIVITWLPKGGMQPDIIEKFADDIKEGAIVTHACTIPTTKFAKIFKDLGRDDLNVTSYHPGA 204 (342)
T ss_pred CceEecCcHHHhcC---CCEEEEecCCCCCchHHHHHHHhhCCCCCEEeccccCCHHHHHHHHHHhCcccCCeeccCCCC
Confidence 45567777788877 9999999999988889999999999999999999999887777776666554332 33344
Q ss_pred CCCCccccccCCccCCC--CCcchHHHHHHHHHhhCCceee
Q psy9637 129 VSGGEDGARYGPSLMPG--GNPAAWPALKPIFQKLNPSFET 167 (490)
Q Consensus 129 vsGg~~~a~~G~~im~G--G~~~a~~~v~~ll~~l~~~~~~ 167 (490)
|-|.+ |+.+..- .++|.++++-++.++.+...+.
T Consensus 205 VPgt~-----Gq~~i~egyAtEEqI~klveL~~sa~k~ay~ 240 (342)
T PRK00961 205 VPEMK-----GQVYIAEGYADEEAVEKLYEIGKKARGNAFK 240 (342)
T ss_pred CCCCC-----CceecccccCCHHHHHHHHHHHHHhCCCeee
Confidence 44433 4432222 3678899999999999887665
|
|
| >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.15 Score=54.81 Aligned_cols=33 Identities=18% Similarity=0.149 Sum_probs=30.6
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCCh
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTT 37 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~ 37 (490)
++|.|||.|..|..+|..|.+.|++|+++|+++
T Consensus 17 ~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 17 LRVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 579999999999999999999999999999664
|
|
| >PRK08163 salicylate hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.024 Score=59.04 Aligned_cols=38 Identities=16% Similarity=0.260 Sum_probs=34.9
Q ss_pred CCCCCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChH
Q psy9637 1 MAAKGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTA 38 (490)
Q Consensus 1 M~~~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~ 38 (490)
|++.++|.|||.|..|..+|..|+++|++|+++++++.
T Consensus 1 ~~~~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~ 38 (396)
T PRK08163 1 MTKVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAE 38 (396)
T ss_pred CCCCCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcc
Confidence 66667899999999999999999999999999999864
|
|
| >PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.07 Score=53.24 Aligned_cols=74 Identities=18% Similarity=0.314 Sum_probs=57.1
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
+++.|||- ..+|.++|..|.++|..|++++.. +.++.+.+.+ +|+||.++....-+.
T Consensus 159 k~vvViGrS~iVG~Pla~lL~~~~atVt~chs~-------------------t~~l~~~~~~---ADIvI~AvG~p~~i~ 216 (284)
T PRK14190 159 KHVVVVGRSNIVGKPVGQLLLNENATVTYCHSK-------------------TKNLAELTKQ---ADILIVAVGKPKLIT 216 (284)
T ss_pred CEEEEECCCCccHHHHHHHHHHCCCEEEEEeCC-------------------chhHHHHHHh---CCEEEEecCCCCcCC
Confidence 57999995 789999999999999999998642 3456666776 999999997753211
Q ss_pred HHHHhhcccCCCCCEEEcCCCCC
Q psy9637 84 DFIDKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 84 ~vl~~l~~~l~~g~iiId~s~~~ 106 (490)
. ..+++|.+|||.|...
T Consensus 217 ---~---~~ik~gavVIDvGi~~ 233 (284)
T PRK14190 217 ---A---DMVKEGAVVIDVGVNR 233 (284)
T ss_pred ---H---HHcCCCCEEEEeeccc
Confidence 1 2467999999998643
|
|
| >cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.066 Score=54.75 Aligned_cols=102 Identities=11% Similarity=0.096 Sum_probs=60.4
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCC-------CeEEEEeCChH--HHHHHHHcccC-----CCCeeccCCHHHHHhhCCCC
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDHG-------FTVVAYNRTTA--KVDSFLANEAK-----GTNIIGAHSLEELVKNLKKP 69 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~G-------~~V~v~dr~~~--~~~~l~~~g~~-----~~~i~~~~s~~e~v~~l~~~ 69 (490)
.||+|+|+ |.+|..++..|...+ .+|.++|+++. +.+.....-.. ..++....++.+.++ ++
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~---~a 79 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFK---DV 79 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhC---CC
Confidence 58999999 999999999999854 58999999653 12211100000 012222344434444 49
Q ss_pred cEEEEecCCC----ch-----------HHHHHHhhcccCCCCCEEEcCCCCChHHHH
Q psy9637 70 RRVMMLVKAG----SA-----------VDDFIDKLVPLLEKGDIIIDGGNSEYQDTD 111 (490)
Q Consensus 70 dvIil~vp~~----~~-----------v~~vl~~l~~~l~~g~iiId~s~~~~~~~~ 111 (490)
|+||++.-.. .. ++++...+.++..++.++|-.|| |-+..
T Consensus 80 DiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsN--PvD~~ 134 (325)
T cd01336 80 DVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGN--PANTN 134 (325)
T ss_pred CEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecC--cHHHH
Confidence 9999876332 11 23334555566556777777876 44444
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.11 Score=53.07 Aligned_cols=39 Identities=10% Similarity=0.191 Sum_probs=29.4
Q ss_pred EEEEcccHHHHHHHHHHHHC-CCeEE-EEeCChHHHHHHHH
Q psy9637 7 IGLIGLAVMGQNLILNMNDH-GFTVV-AYNRTTAKVDSFLA 45 (490)
Q Consensus 7 IgiIGlG~MG~~lA~~L~~~-G~~V~-v~dr~~~~~~~l~~ 45 (490)
|||+|+|++|...++.+.+. +.+|+ +.|.+++....+..
T Consensus 1 VaInG~GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~ 41 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAK 41 (333)
T ss_pred CEEECCcHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHH
Confidence 69999999999999998754 56666 56777776555543
|
All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's. |
| >PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.077 Score=52.93 Aligned_cols=74 Identities=16% Similarity=0.262 Sum_probs=57.5
Q ss_pred CcEEEEcc-cHHHHHHHHHHHH--CCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCch
Q psy9637 5 GDIGLIGL-AVMGQNLILNMND--HGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSA 81 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~--~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~ 81 (490)
+++.|||- ..+|.++|..|.+ ++..|++++.. +.++.+.+.+ +|+||.++.-+.-
T Consensus 159 k~vvViGrS~~VGkPla~lL~~~~~~atVtvchs~-------------------T~~l~~~~k~---ADIvV~AvGkp~~ 216 (284)
T PRK14193 159 AHVVVIGRGVTVGRPIGLLLTRRSENATVTLCHTG-------------------TRDLAAHTRR---ADIIVAAAGVAHL 216 (284)
T ss_pred CEEEEECCCCcchHHHHHHHhhccCCCEEEEeCCC-------------------CCCHHHHHHh---CCEEEEecCCcCc
Confidence 57999995 6789999999998 78999998752 3466777776 9999999987632
Q ss_pred HHHHHHhhcccCCCCCEEEcCCCCC
Q psy9637 82 VDDFIDKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 82 v~~vl~~l~~~l~~g~iiId~s~~~ 106 (490)
+. ...+++|.+|||.|...
T Consensus 217 i~------~~~ik~GavVIDvGin~ 235 (284)
T PRK14193 217 VT------ADMVKPGAAVLDVGVSR 235 (284)
T ss_pred cC------HHHcCCCCEEEEccccc
Confidence 21 12577999999999754
|
|
| >PRK05884 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.2 Score=47.86 Aligned_cols=41 Identities=10% Similarity=0.178 Sum_probs=35.9
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLA 45 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~ 45 (490)
||+-|.|. |.+|..+++.|++.|++|++.+|++++.+.+.+
T Consensus 1 m~vlItGas~giG~~ia~~l~~~g~~v~~~~r~~~~~~~~~~ 42 (223)
T PRK05884 1 VEVLVTGGDTDLGRTIAEGFRNDGHKVTLVGARRDDLEVAAK 42 (223)
T ss_pred CeEEEEeCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 36888876 899999999999999999999999988776654
|
|
| >PRK05597 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.083 Score=54.67 Aligned_cols=122 Identities=17% Similarity=0.215 Sum_probs=70.1
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHcccC-CCCe--eccCCHHHHHhhCCCCcEEEEecCCCc
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGF-TVVAYNRTTAKVDSFLANEAK-GTNI--IGAHSLEELVKNLKKPRRVMMLVKAGS 80 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~g~~-~~~i--~~~~s~~e~v~~l~~~dvIil~vp~~~ 80 (490)
.+|.|||+|-.|..++.+|+..|. +++++|.+.-....+...-.- ...+ .-+....+-+.++ .|++-+...+..-
T Consensus 29 ~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~-np~v~v~~~~~~i 107 (355)
T PRK05597 29 AKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLAL-NPDVKVTVSVRRL 107 (355)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHH-CCCcEEEEEEeec
Confidence 589999999999999999999997 688888874222222211000 0000 0112222222222 2667766665432
Q ss_pred hHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCCC
Q psy9637 81 AVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGG 132 (490)
Q Consensus 81 ~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg 132 (490)
..+.. .+ .+..-|+|||++-.. ..-....+.+.+.++.|+.+.+.|-
T Consensus 108 ~~~~~-~~---~~~~~DvVvd~~d~~-~~r~~~n~~c~~~~ip~v~~~~~g~ 154 (355)
T PRK05597 108 TWSNA-LD---ELRDADVILDGSDNF-DTRHLASWAAARLGIPHVWASILGF 154 (355)
T ss_pred CHHHH-HH---HHhCCCEEEECCCCH-HHHHHHHHHHHHcCCCEEEEEEecC
Confidence 22222 22 234568999998643 3333344667778888887766543
|
|
| >PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+) | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.076 Score=53.31 Aligned_cols=74 Identities=16% Similarity=0.234 Sum_probs=57.3
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
++|.|||- ..+|.++|..|.++|..|++++.. +.++++.+.+ +|+|+.++.-..-+.
T Consensus 168 k~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~-------------------T~nl~~~~~~---ADIvv~AvGk~~~i~ 225 (299)
T PLN02516 168 KKAVVVGRSNIVGLPVSLLLLKADATVTVVHSR-------------------TPDPESIVRE---ADIVIAAAGQAMMIK 225 (299)
T ss_pred CEEEEECCCccchHHHHHHHHHCCCEEEEeCCC-------------------CCCHHHHHhh---CCEEEEcCCCcCccC
Confidence 57999995 678999999999999999999642 3456777776 999999996642111
Q ss_pred HHHHhhcccCCCCCEEEcCCCCC
Q psy9637 84 DFIDKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 84 ~vl~~l~~~l~~g~iiId~s~~~ 106 (490)
...+++|.+|||.|...
T Consensus 226 ------~~~vk~gavVIDvGin~ 242 (299)
T PLN02516 226 ------GDWIKPGAAVIDVGTNA 242 (299)
T ss_pred ------HHHcCCCCEEEEeeccc
Confidence 12477999999999754
|
|
| >PRK14851 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.083 Score=59.14 Aligned_cols=122 Identities=16% Similarity=0.177 Sum_probs=71.5
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHcc-cCCCCe--eccCCHHHHHhhCCCCcEEEEecCCCc
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGF-TVVAYNRTTAKVDSFLANE-AKGTNI--IGAHSLEELVKNLKKPRRVMMLVKAGS 80 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~g-~~~~~i--~~~~s~~e~v~~l~~~dvIil~vp~~~ 80 (490)
.+|+|||+|-+|..++.+|++.|. ++++.|.+.=....+..+- .....+ .-+.-.++.+.++ .|++-|.+.+..
T Consensus 44 ~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~~i-nP~~~I~~~~~~- 121 (679)
T PRK14851 44 AKVAIPGMGGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQALSI-NPFLEITPFPAG- 121 (679)
T ss_pred CeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHHHh-CCCCeEEEEecC-
Confidence 689999999999999999999997 6777776532222222111 000000 0111223333322 256666666654
Q ss_pred hHHHHHHhhcccCCCCCEEEcCCCCChHHHH-HHHHHHHHccccccccCCCC
Q psy9637 81 AVDDFIDKLVPLLEKGDIIIDGGNSEYQDTD-RRSKALEAKGLLYVGCGVSG 131 (490)
Q Consensus 81 ~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~-~~~~~l~~~gi~~ld~~vsG 131 (490)
...+-++++ +..-|+|||+......++. .+.+.+.+.++.++.+++.|
T Consensus 122 i~~~n~~~~---l~~~DvVid~~D~~~~~~r~~l~~~c~~~~iP~i~~g~~G 170 (679)
T PRK14851 122 INADNMDAF---LDGVDVVLDGLDFFQFEIRRTLFNMAREKGIPVITAGPLG 170 (679)
T ss_pred CChHHHHHH---HhCCCEEEECCCCCcHHHHHHHHHHHHHCCCCEEEeeccc
Confidence 223333333 3456899999875423333 34467778899999887655
|
|
| >PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.084 Score=52.58 Aligned_cols=74 Identities=15% Similarity=0.249 Sum_probs=57.0
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
+++.|||- ..+|.+++..|.++|..|++++.. +.++++.+.+ +|+||.++.-..-+.
T Consensus 158 k~vvViGrS~iVGkPla~lL~~~~AtVtichs~-------------------T~nl~~~~~~---ADIvI~AvGk~~~i~ 215 (282)
T PRK14182 158 KRALVVGRSNIVGKPMAMMLLERHATVTIAHSR-------------------TADLAGEVGR---ADILVAAIGKAELVK 215 (282)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC-------------------CCCHHHHHhh---CCEEEEecCCcCccC
Confidence 57999995 678999999999999999998642 3456667776 999999997653221
Q ss_pred HHHHhhcccCCCCCEEEcCCCCC
Q psy9637 84 DFIDKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 84 ~vl~~l~~~l~~g~iiId~s~~~ 106 (490)
. ..+++|.+|||.|...
T Consensus 216 ---~---~~ik~gaiVIDvGin~ 232 (282)
T PRK14182 216 ---G---AWVKEGAVVIDVGMNR 232 (282)
T ss_pred ---H---HHcCCCCEEEEeecee
Confidence 1 2467999999999653
|
|
| >PRK08762 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.15 Score=53.12 Aligned_cols=121 Identities=17% Similarity=0.186 Sum_probs=69.2
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHccc-CCCCe--eccCCHHHHHhhCCCCcEEEEecCCCc
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGF-TVVAYNRTTAKVDSFLANEA-KGTNI--IGAHSLEELVKNLKKPRRVMMLVKAGS 80 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~g~-~~~~i--~~~~s~~e~v~~l~~~dvIil~vp~~~ 80 (490)
.+|.|||+|-.|..++.+|++.|. +++++|++.-....+..... ....+ .-+....+.+.++ .+++-+...+..
T Consensus 136 ~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~-np~v~v~~~~~~- 213 (376)
T PRK08762 136 ARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAAL-NPDVQVEAVQER- 213 (376)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHH-CCCCEEEEEecc-
Confidence 589999999999999999999998 79999987322222221100 00000 0112222223222 145545444432
Q ss_pred hHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCC
Q psy9637 81 AVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSG 131 (490)
Q Consensus 81 ~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsG 131 (490)
...+.+..+ +..-|+|||++-.. ..-..+.+.+.+.++.|+.+.+.|
T Consensus 214 ~~~~~~~~~---~~~~D~Vv~~~d~~-~~r~~ln~~~~~~~ip~i~~~~~g 260 (376)
T PRK08762 214 VTSDNVEAL---LQDVDVVVDGADNF-PTRYLLNDACVKLGKPLVYGAVFR 260 (376)
T ss_pred CChHHHHHH---HhCCCEEEECCCCH-HHHHHHHHHHHHcCCCEEEEEecc
Confidence 222222333 33568999997653 333334477788899998887654
|
|
| >PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.085 Score=52.70 Aligned_cols=73 Identities=16% Similarity=0.286 Sum_probs=56.8
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
+++.|||- ..+|.+++..|.++|..|++++.. +.++.+.+.+ +|+||.++.-...+.
T Consensus 160 K~vvViGrS~iVGkPla~lL~~~~ATVtichs~-------------------T~~L~~~~~~---ADIvV~AvGkp~~i~ 217 (288)
T PRK14171 160 KNVVIIGRSNIVGKPLSALLLKENCSVTICHSK-------------------THNLSSITSK---ADIVVAAIGSPLKLT 217 (288)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC-------------------CCCHHHHHhh---CCEEEEccCCCCccC
Confidence 57999996 678999999999999999998742 3456677776 999999997653222
Q ss_pred HHHHhhcccCCCCCEEEcCCCC
Q psy9637 84 DFIDKLVPLLEKGDIIIDGGNS 105 (490)
Q Consensus 84 ~vl~~l~~~l~~g~iiId~s~~ 105 (490)
. ..+++|.+|||.|..
T Consensus 218 ---~---~~vk~GavVIDvGin 233 (288)
T PRK14171 218 ---A---EYFNPESIVIDVGIN 233 (288)
T ss_pred ---H---HHcCCCCEEEEeecc
Confidence 1 246799999999964
|
|
| >TIGR01771 L-LDH-NAD L-lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.092 Score=53.02 Aligned_cols=96 Identities=15% Similarity=0.156 Sum_probs=59.6
Q ss_pred EEcccHHHHHHHHHHHHCCC--eEEEEeCChHHHHHHHHcccC-----CCCeec-cCCHHHHHhhCCCCcEEEEecCCCc
Q psy9637 9 LIGLAVMGQNLILNMNDHGF--TVVAYNRTTAKVDSFLANEAK-----GTNIIG-AHSLEELVKNLKKPRRVMMLVKAGS 80 (490)
Q Consensus 9 iIGlG~MG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~g~~-----~~~i~~-~~s~~e~v~~l~~~dvIil~vp~~~ 80 (490)
|||+|.+|..+|..|+..+. ++.++|++.++++.....-.. ..+++. ..+.+++ +++|+|+++.-.+.
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~----~daDivVitag~~r 76 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGDYSDC----KDADLVVITAGAPQ 76 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCCHHHH----CCCCEEEECCCCCC
Confidence 69999999999999998886 699999988765543321110 111222 2334333 33899998764321
Q ss_pred ---------------hHHHHHHhhcccCCCCCEEEcCCCCChHHHH
Q psy9637 81 ---------------AVDDFIDKLVPLLEKGDIIIDGGNSEYQDTD 111 (490)
Q Consensus 81 ---------------~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~ 111 (490)
.++++...+..+ .+..+||..|| |-+..
T Consensus 77 k~g~~R~dll~~N~~i~~~~~~~i~~~-~p~~~vivvsN--P~d~~ 119 (299)
T TIGR01771 77 KPGETRLELVGRNVRIMKSIVPEVVKS-GFDGIFLVATN--PVDIL 119 (299)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEeCC--HHHHH
Confidence 133444555554 56778888886 44443
|
This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases. |
| >TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.078 Score=52.58 Aligned_cols=69 Identities=9% Similarity=0.072 Sum_probs=47.0
Q ss_pred cEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhC------CC-CcEEEEecC
Q psy9637 6 DIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNL------KK-PRRVMMLVK 77 (490)
Q Consensus 6 ~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l------~~-~dvIil~vp 77 (490)
+|.|+|. |.+|..++..|.+.|++|.+..|++++... .+...... -..+++.+...+ +. +|.|+++.|
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~~~~---~~~~~~~~-d~~d~~~l~~a~~~~~~~~g~~d~v~~~~~ 76 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASVPFLVASRSSSSSAG---PNEKHVKF-DWLDEDTWDNPFSSDDGMEPEISAVYLVAP 76 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCccccC---CCCccccc-cCCCHHHHHHHHhcccCcCCceeEEEEeCC
Confidence 4788886 999999999999999999999999875431 11110001 134444444433 44 789988877
Q ss_pred C
Q psy9637 78 A 78 (490)
Q Consensus 78 ~ 78 (490)
.
T Consensus 77 ~ 77 (285)
T TIGR03649 77 P 77 (285)
T ss_pred C
Confidence 5
|
This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi. |
| >PLN02353 probable UDP-glucose 6-dehydrogenase | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.16 Score=54.66 Aligned_cols=114 Identities=12% Similarity=0.170 Sum_probs=74.2
Q ss_pred CcEEEEcc----------cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHccc-----------------CCCCeeccC
Q psy9637 5 GDIGLIGL----------AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEA-----------------KGTNIIGAH 57 (490)
Q Consensus 5 ~~IgiIGl----------G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~-----------------~~~~i~~~~ 57 (490)
.+|+|+|+ ..-...++..|.+.|.+|.+||+--...+.....+. ...++..++
T Consensus 325 ~~VavlGlafK~~tdD~R~Spa~~li~~L~~~G~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (473)
T PLN02353 325 KKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEEQIQRDLSMNKFDWDHPRHLQPMSPTAVKQVSVVW 404 (473)
T ss_pred CEEEEEeeeecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChHHHHHHhhcccccccccccccccccccccceeeeC
Confidence 58999998 346778999999999999999986333221101100 001244566
Q ss_pred CHHHHHhhCCCCcEEEEecCCCchHHHH-HHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccC
Q psy9637 58 SLEELVKNLKKPRRVMMLVKAGSAVDDF-IDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCG 128 (490)
Q Consensus 58 s~~e~v~~l~~~dvIil~vp~~~~v~~v-l~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~ 128 (490)
++.++++. +|+|++++... ..+.. .+.+.+.+.+..+|+|+-|..... .+++.|+.|+..+
T Consensus 405 ~~~~a~~~---aD~vvi~t~~~-ef~~l~~~~~~~~m~~~~~viD~rn~l~~~------~~~~~G~~y~~~G 466 (473)
T PLN02353 405 DAYEATKG---AHGICILTEWD-EFKTLDYQKIYDNMQKPAFVFDGRNVLDHE------KLREIGFIVYSIG 466 (473)
T ss_pred CHHHHhcC---CCEEEECCCCh-HhcccCHHHHHHhccCCCEEEECCCCCCHH------HHHhCCcEEEEeC
Confidence 77776665 99999999885 44432 344445455555899999987432 2335588887765
|
|
| >PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.088 Score=53.97 Aligned_cols=74 Identities=19% Similarity=0.277 Sum_probs=57.7
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
+++.|||- ..+|.++|..|.++|..|+++... +.++.+.+.+ +|+||.++.-..-+.
T Consensus 232 K~vvVIGRS~iVGkPLa~LL~~~~ATVTicHs~-------------------T~nl~~~~r~---ADIVIsAvGkp~~i~ 289 (364)
T PLN02616 232 KRAVVIGRSNIVGMPAALLLQREDATVSIVHSR-------------------TKNPEEITRE---ADIIISAVGQPNMVR 289 (364)
T ss_pred CEEEEECCCccccHHHHHHHHHCCCeEEEeCCC-------------------CCCHHHHHhh---CCEEEEcCCCcCcCC
Confidence 57999995 678999999999999999998642 3466777776 999999997764322
Q ss_pred HHHHhhcccCCCCCEEEcCCCCC
Q psy9637 84 DFIDKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 84 ~vl~~l~~~l~~g~iiId~s~~~ 106 (490)
. ..+++|.+|||.|...
T Consensus 290 ~------d~vK~GAvVIDVGIn~ 306 (364)
T PLN02616 290 G------SWIKPGAVVIDVGINP 306 (364)
T ss_pred H------HHcCCCCEEEeccccc
Confidence 1 2467999999998643
|
|
| >PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.13 Score=54.10 Aligned_cols=121 Identities=16% Similarity=0.177 Sum_probs=69.3
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHccc-CCCCe--eccCCHHHHHhhCCCCcEEEEecCCCc
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGF-TVVAYNRTTAKVDSFLANEA-KGTNI--IGAHSLEELVKNLKKPRRVMMLVKAGS 80 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~g~-~~~~i--~~~~s~~e~v~~l~~~dvIil~vp~~~ 80 (490)
.+|.|||+|-.|..++.+|+..|. +++++|.+.-....+..... ....+ .-+....+.+.++ .+++-+...+..
T Consensus 43 ~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~-np~v~i~~~~~~- 120 (392)
T PRK07878 43 ARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEI-NPLVNVRLHEFR- 120 (392)
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecCcccccccccChhcCCChHHHHHHHHHHHh-CCCcEEEEEecc-
Confidence 589999999999999999999997 68888876433222222110 00000 0111222222222 256666555542
Q ss_pred hHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCC
Q psy9637 81 AVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSG 131 (490)
Q Consensus 81 ~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsG 131 (490)
...+-+.++ +..=|+|||+.-. +..-..+.+.+...++.|+.+.+.|
T Consensus 121 i~~~~~~~~---~~~~D~Vvd~~d~-~~~r~~ln~~~~~~~~p~v~~~~~g 167 (392)
T PRK07878 121 LDPSNAVEL---FSQYDLILDGTDN-FATRYLVNDAAVLAGKPYVWGSIYR 167 (392)
T ss_pred CChhHHHHH---HhcCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEEecc
Confidence 222222222 3455899999754 3333334477777888888776654
|
|
| >COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.098 Score=51.77 Aligned_cols=74 Identities=20% Similarity=0.341 Sum_probs=58.6
Q ss_pred CcEEEEcccH-HHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 5 GDIGLIGLAV-MGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 5 ~~IgiIGlG~-MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
+++.|||-+. +|.+|+..|...++.|++++.. +.++.+.+++ +|+++.++--+.-++
T Consensus 157 k~~vVVGrS~iVGkPla~lL~~~naTVtvcHs~-------------------T~~l~~~~k~---ADIvv~AvG~p~~i~ 214 (283)
T COG0190 157 KNVVVVGRSNIVGKPLALLLLNANATVTVCHSR-------------------TKDLASITKN---ADIVVVAVGKPHFIK 214 (283)
T ss_pred CEEEEECCCCcCcHHHHHHHHhCCCEEEEEcCC-------------------CCCHHHHhhh---CCEEEEecCCccccc
Confidence 5799999764 7999999999999999998753 3466666776 999999997653332
Q ss_pred HHHHhhcccCCCCCEEEcCCCCC
Q psy9637 84 DFIDKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 84 ~vl~~l~~~l~~g~iiId~s~~~ 106 (490)
.+.+++|.+|||.|...
T Consensus 215 ------~d~vk~gavVIDVGinr 231 (283)
T COG0190 215 ------ADMVKPGAVVIDVGINR 231 (283)
T ss_pred ------cccccCCCEEEecCCcc
Confidence 34678999999999754
|
|
| >TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.2 Score=53.12 Aligned_cols=113 Identities=19% Similarity=0.187 Sum_probs=63.3
Q ss_pred cEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHH-HH---HHHH--cccCCCCeeccCCHHHHHhhCCCCcEEEEec--C
Q psy9637 6 DIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAK-VD---SFLA--NEAKGTNIIGAHSLEELVKNLKKPRRVMMLV--K 77 (490)
Q Consensus 6 ~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~-~~---~l~~--~g~~~~~i~~~~s~~e~v~~l~~~dvIil~v--p 77 (490)
||.|||+|..|.++|+-|.+.|++|+++|..+.. .. .+.+ .|.. +..-.+. +.+. .+|+|+.+- |
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G~~V~~sD~~~~~~~~~~~~~~~~~~gi~---~~~g~~~-~~~~---~~d~vv~sp~i~ 73 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKGAEVTVTDLKPNEELEPSMGQLRLNEGSV---LHTGLHL-EDLN---NADLVVKSPGIP 73 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCCCEEEEEeCCCCccchhHHHHHhhccCcE---EEecCch-HHhc---cCCEEEECCCCC
Confidence 5899999999999999999999999999975432 11 1221 2221 2111232 3333 489887654 2
Q ss_pred CCch-HHHHH---------Hhhc-ccCCCCCEEEcCCCCChHHHHHHHHHHHHcccccc
Q psy9637 78 AGSA-VDDFI---------DKLV-PLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYV 125 (490)
Q Consensus 78 ~~~~-v~~vl---------~~l~-~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~l 125 (490)
.+.+ +.... .+++ ..+....|-|-+|++.-.++.-+...+...|..+.
T Consensus 74 ~~~p~~~~a~~~~i~i~~~~e~~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g~~~~ 132 (433)
T TIGR01087 74 PDHPLVQAAAKRGIPVVGDIELFLRLVPLPVVAITGTNGKTTTTSLLYHLLKAAGLKAF 132 (433)
T ss_pred CCCHHHHHHHHCCCcEEEHHHHHHhhcCCCEEEEECCCCHHHHHHHHHHHHHhcCCCeE
Confidence 2222 22111 1222 22222345566666664444444477777776544
|
|
| >COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.067 Score=54.36 Aligned_cols=87 Identities=13% Similarity=0.240 Sum_probs=66.4
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
+++-|.|.|..|+.+|.+|...|.+|.|++.+|-++-+..=.|.. +.+.+|++.. +|++|+++-+-.
T Consensus 210 K~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA~MdGf~------V~~m~~Aa~~---gDifiT~TGnkd---- 276 (420)
T COG0499 210 KNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEAAMDGFR------VMTMEEAAKT---GDIFVTATGNKD---- 276 (420)
T ss_pred ceEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHHhhcCcE------EEEhHHhhhc---CCEEEEccCCcC----
Confidence 467889999999999999999999999999998776554444432 5667788776 899998886642
Q ss_pred HH-HhhcccCCCCCEEEcCCC
Q psy9637 85 FI-DKLVPLLEKGDIIIDGGN 104 (490)
Q Consensus 85 vl-~~l~~~l~~g~iiId~s~ 104 (490)
|+ .+-...++.|.|+.+.|-
T Consensus 277 Vi~~eh~~~MkDgaIl~N~GH 297 (420)
T COG0499 277 VIRKEHFEKMKDGAILANAGH 297 (420)
T ss_pred ccCHHHHHhccCCeEEecccc
Confidence 33 233445778889888773
|
|
| >PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.095 Score=53.45 Aligned_cols=73 Identities=21% Similarity=0.323 Sum_probs=56.9
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
+++.|||- ..+|.++|..|.++|..|+++... +.++.+.+.+ +|+||.++.-+.-+.
T Consensus 215 K~vvVIGRS~iVGkPla~LL~~~~ATVTicHs~-------------------T~nl~~~~~~---ADIvIsAvGkp~~v~ 272 (345)
T PLN02897 215 KNAVVIGRSNIVGLPMSLLLQRHDATVSTVHAF-------------------TKDPEQITRK---ADIVIAAAGIPNLVR 272 (345)
T ss_pred CEEEEECCCccccHHHHHHHHHCCCEEEEEcCC-------------------CCCHHHHHhh---CCEEEEccCCcCccC
Confidence 57999995 678999999999999999988642 3456667776 999999998764322
Q ss_pred HHHHhhcccCCCCCEEEcCCCC
Q psy9637 84 DFIDKLVPLLEKGDIIIDGGNS 105 (490)
Q Consensus 84 ~vl~~l~~~l~~g~iiId~s~~ 105 (490)
. ..+++|.+|||.|..
T Consensus 273 ---~---d~vk~GavVIDVGin 288 (345)
T PLN02897 273 ---G---SWLKPGAVVIDVGTT 288 (345)
T ss_pred ---H---HHcCCCCEEEEcccc
Confidence 1 246799999999964
|
|
| >cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.17 Score=49.19 Aligned_cols=124 Identities=13% Similarity=0.147 Sum_probs=70.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHcc-cCCCCe--eccCCHHHHHhhCCCCcEEEEecCCC
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGF-TVVAYNRTTAKVDSFLANE-AKGTNI--IGAHSLEELVKNLKKPRRVMMLVKAG 79 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~g-~~~~~i--~~~~s~~e~v~~l~~~dvIil~vp~~ 79 (490)
..+|.|+|+|.+|..++.+|++.|. +++++|.+.=....+..+. .....+ .-++...+.+..+ .|++-+..++..
T Consensus 11 ~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~i-nP~~~V~~~~~~ 89 (231)
T cd00755 11 NAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDI-NPECEVDAVEEF 89 (231)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHH-CCCcEEEEeeee
Confidence 3589999999999999999999997 7888887643222222110 000000 0112223333322 256666555542
Q ss_pred chHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCCC
Q psy9637 80 SAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGG 132 (490)
Q Consensus 80 ~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg 132 (490)
...+-+..+. ...-++|||+.-.. .....+.+.+.+.++.|+.+.-.|+
T Consensus 90 -i~~~~~~~l~--~~~~D~VvdaiD~~-~~k~~L~~~c~~~~ip~I~s~g~g~ 138 (231)
T cd00755 90 -LTPDNSEDLL--GGDPDFVVDAIDSI-RAKVALIAYCRKRKIPVISSMGAGG 138 (231)
T ss_pred -cCHhHHHHHh--cCCCCEEEEcCCCH-HHHHHHHHHHHHhCCCEEEEeCCcC
Confidence 2222233332 12358999986543 3444555777888888887754443
|
coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.081 Score=54.06 Aligned_cols=102 Identities=11% Similarity=0.097 Sum_probs=58.5
Q ss_pred cEEEEcc-cHHHHHHHHHHHHCCC-------eEEEEeCChHH--HHHHH----Hcc-cCCCCeeccCCHHHHHhhCCCCc
Q psy9637 6 DIGLIGL-AVMGQNLILNMNDHGF-------TVVAYNRTTAK--VDSFL----ANE-AKGTNIIGAHSLEELVKNLKKPR 70 (490)
Q Consensus 6 ~IgiIGl-G~MG~~lA~~L~~~G~-------~V~v~dr~~~~--~~~l~----~~g-~~~~~i~~~~s~~e~v~~l~~~d 70 (490)
||+|||+ |.+|..+|..|...|. ++.++|+++.. .+... ... .....+....+..+ .++.+|
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~---~~~~aD 77 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAV---AFTDVD 77 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHH---HhCCCC
Confidence 6999999 9999999999998654 59999996542 22111 000 00011222223223 334499
Q ss_pred EEEEecCCCc---h------------HHHHHHhhcccCCCCCEEEcCCCCChHHHHH
Q psy9637 71 RVMMLVKAGS---A------------VDDFIDKLVPLLEKGDIIIDGGNSEYQDTDR 112 (490)
Q Consensus 71 vIil~vp~~~---~------------v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~ 112 (490)
+||++--.+. . ++++...+.++-+++.+||-.|| |-+...
T Consensus 78 iVVitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsN--PvDv~t 132 (324)
T TIGR01758 78 VAILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGN--PANTNA 132 (324)
T ss_pred EEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCC--cHHHHH
Confidence 9998763321 1 23333455555446677777775 455443
|
This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography |
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.18 Score=48.78 Aligned_cols=94 Identities=17% Similarity=0.211 Sum_probs=66.2
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccC-CCCe-eccCCHHHHHhhCCCCcEEEEe-----cC
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAK-GTNI-IGAHSLEELVKNLKKPRRVMML-----VK 77 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~-~~~i-~~~~s~~e~v~~l~~~dvIil~-----vp 77 (490)
++|.=||+| |..++..|++.|.+|++.|.+++.++........ +..+ -...+.+|+...=+.-|+|++| ||
T Consensus 61 ~~vLDvGCG--gG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv~ 138 (243)
T COG2227 61 LRVLDVGCG--GGILSEPLARLGASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEHVP 138 (243)
T ss_pred CeEEEecCC--ccHhhHHHHHCCCeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHccC
Confidence 578889999 8899999999999999999999988766543222 1111 1245666766532457988876 45
Q ss_pred CCchHHHHHHhhcccCCCCCEEEcCC
Q psy9637 78 AGSAVDDFIDKLVPLLEKGDIIIDGG 103 (490)
Q Consensus 78 ~~~~v~~vl~~l~~~l~~g~iiId~s 103 (490)
++ +.++..+...++||-+++..+
T Consensus 139 dp---~~~~~~c~~lvkP~G~lf~ST 161 (243)
T COG2227 139 DP---ESFLRACAKLVKPGGILFLST 161 (243)
T ss_pred CH---HHHHHHHHHHcCCCcEEEEec
Confidence 43 457777778888887766543
|
|
| >PRK08040 putative semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.043 Score=56.23 Aligned_cols=96 Identities=14% Similarity=0.259 Sum_probs=58.5
Q ss_pred CCCCCcEEEEcc-cHHHHHHHHHHHHCCC---eEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEec
Q psy9637 1 MAAKGDIGLIGL-AVMGQNLILNMNDHGF---TVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLV 76 (490)
Q Consensus 1 M~~~~~IgiIGl-G~MG~~lA~~L~~~G~---~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~v 76 (490)
|..+++|+|||. |..|.-|.+.|.++.| ++..+......-+.+. ... ..+. ..++++.. .+..|++|+++
T Consensus 1 ~~~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~~~-~~~--~~~~-v~~~~~~~--~~~~Dvvf~a~ 74 (336)
T PRK08040 1 MSEGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLR-FGG--KSVT-VQDAAEFD--WSQAQLAFFVA 74 (336)
T ss_pred CCCCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCceEE-ECC--cceE-EEeCchhh--ccCCCEEEECC
Confidence 656789999996 9999999999998655 4444432211111111 111 1122 22444432 12389999999
Q ss_pred CCCchHHHHHHhhcccCCCCCEEEcCCCCC
Q psy9637 77 KAGSAVDDFIDKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 77 p~~~~v~~vl~~l~~~l~~g~iiId~s~~~ 106 (490)
|.+ ...++...+. ..|..|||.|..+
T Consensus 75 p~~-~s~~~~~~~~---~~g~~VIDlS~~f 100 (336)
T PRK08040 75 GRE-ASAAYAEEAT---NAGCLVIDSSGLF 100 (336)
T ss_pred CHH-HHHHHHHHHH---HCCCEEEECChHh
Confidence 996 5555555443 4689999998743
|
|
| >TIGR01082 murC UDP-N-acetylmuramate--alanine ligase | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.25 Score=52.75 Aligned_cols=110 Identities=17% Similarity=0.261 Sum_probs=63.5
Q ss_pred cEEEEcccHHHHH-HHHHHHHCCCeEEEEeCChH-HHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEec--CCCc-
Q psy9637 6 DIGLIGLAVMGQN-LILNMNDHGFTVVAYNRTTA-KVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLV--KAGS- 80 (490)
Q Consensus 6 ~IgiIGlG~MG~~-lA~~L~~~G~~V~v~dr~~~-~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~v--p~~~- 80 (490)
+|-|||+|..|.+ +|+.|++.|++|+++|.++. ..+.+.+.+.. +..-.+. +.+ +.+|+|+.+- |.+.
T Consensus 1 ~~~~iGiggsGm~~la~~L~~~G~~v~~~D~~~~~~~~~l~~~gi~---~~~g~~~-~~~---~~~d~vV~spgi~~~~p 73 (448)
T TIGR01082 1 KIHFVGIGGIGMSGIAEILLNRGYQVSGSDIAENATTKRLEALGIP---IYIGHSA-ENL---DDADVVVVSAAIKDDNP 73 (448)
T ss_pred CEEEEEECHHHHHHHHHHHHHCCCeEEEECCCcchHHHHHHHCcCE---EeCCCCH-HHC---CCCCEEEECCCCCCCCH
Confidence 4789999999997 99999999999999997653 33344443322 1111222 223 3388888653 3222
Q ss_pred hHHHHH---------Hhhc-ccCC-CCCEEEcCCCCChHHHHHHHHHHHHccc
Q psy9637 81 AVDDFI---------DKLV-PLLE-KGDIIIDGGNSEYQDTDRRSKALEAKGL 122 (490)
Q Consensus 81 ~v~~vl---------~~l~-~~l~-~g~iiId~s~~~~~~~~~~~~~l~~~gi 122 (490)
.+.... -+++ ..++ ..-|-|-+||+.-.++.-+...+...|.
T Consensus 74 ~~~~a~~~~i~v~~~~el~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~~g~ 126 (448)
T TIGR01082 74 EIVEAKERGIPVIRRAEMLAELMRFRHSIAVAGTHGKTTTTAMIAVILKEAGL 126 (448)
T ss_pred HHHHHHHcCCceEeHHHHHHHHHhcCcEEEEECCCChHHHHHHHHHHHHHcCC
Confidence 222221 1222 2222 2346666667765555555577777775
|
UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081. |
| >TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.95 Score=44.68 Aligned_cols=111 Identities=14% Similarity=0.142 Sum_probs=80.1
Q ss_pred CeeccCCHHHHHhhCCCCcEEEEecCCCchHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCC
Q psy9637 52 NIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSG 131 (490)
Q Consensus 52 ~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsG 131 (490)
+++.++|-.|+++. +|++|+-+|-+...-.+++.+++.+++|.+|.+.-|+++....+..+.+.++.+...... -+
T Consensus 126 GvkVtsDD~EAv~~---aei~I~ftPfG~~q~~Iikkii~~lpEgAII~~tCTIpt~~ly~ilE~l~R~DvgVsS~H-Pa 201 (340)
T TIGR01723 126 GLKVTTDDREAVED---ADIIITWLPKGNKQPDIIKKFIDDIPEGAIVTHACTIPTTKFAKIFEDLGREDLNVTSYH-PG 201 (340)
T ss_pred CceEecCcHHHhcC---CCEEEEEcCCCCCchHHHHHHHhhCCCCCEEeccccCChHHHHHHHHhhCcccCCeeccC-CC
Confidence 45567777888887 999999999998788899999999999999999999887776666666654433222111 12
Q ss_pred CccccccCC-ccCCC-CCcchHHHHHHHHHhhCCceee
Q psy9637 132 GEDGARYGP-SLMPG-GNPAAWPALKPIFQKLNPSFET 167 (490)
Q Consensus 132 g~~~a~~G~-~im~G-G~~~a~~~v~~ll~~l~~~~~~ 167 (490)
+.++.. |. -+.-| .++|.++++-++.++.+...+.
T Consensus 202 aVPgt~-~q~Yi~egyAtEEqI~klveL~~sa~k~ay~ 238 (340)
T TIGR01723 202 CVPEMK-GQVYIAEGYASEEAVNKLYELGKKARGKAFK 238 (340)
T ss_pred CCCCCC-CceEeecccCCHHHHHHHHHHHHHhCCCeee
Confidence 334444 33 22222 3678899999999999887665
|
This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201. |
| >PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.65 E-value=0.37 Score=51.32 Aligned_cols=115 Identities=18% Similarity=0.170 Sum_probs=63.6
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHH--HHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCC---
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAK--VDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAG--- 79 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~--~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~--- 79 (490)
++|.|+|.|..|...|+.|++.|+.|+++|.++.. .+++.+... +..+..-....+.... +|+||.+.--+
T Consensus 6 ~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~~~~~~l~~~~~-gi~~~~g~~~~~~~~~---~d~vv~spgi~~~~ 81 (445)
T PRK04308 6 KKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKPERVAQIGKMFD-GLVFYTGRLKDALDNG---FDILALSPGISERQ 81 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCchhHHHHhhccC-CcEEEeCCCCHHHHhC---CCEEEECCCCCCCC
Confidence 58999999999999999999999999999976542 334432100 1111111112233333 79988765221
Q ss_pred chHHHHHH---------hhc-ccCC---CCCEEEcCCCCChHHHHHHHHHHHHcccc
Q psy9637 80 SAVDDFID---------KLV-PLLE---KGDIIIDGGNSEYQDTDRRSKALEAKGLL 123 (490)
Q Consensus 80 ~~v~~vl~---------~l~-~~l~---~g~iiId~s~~~~~~~~~~~~~l~~~gi~ 123 (490)
+.+....+ +++ ..+. ...|-|-+||+.-.++.-+...+...|..
T Consensus 82 p~~~~a~~~~i~v~~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~~g~~ 138 (445)
T PRK04308 82 PDIEAFKQNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLD 138 (445)
T ss_pred HHHHHHHHcCCcEEEhHHHHHHhhhcCCCCEEEEECCCcHHHHHHHHHHHHHHcCCC
Confidence 12222211 121 2221 12355666666544444444677766654
|
|
| >TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.35 Score=47.43 Aligned_cols=112 Identities=15% Similarity=0.127 Sum_probs=68.0
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
..++-|+|.|..+.++++-+...||+|+++|..++........+ ........+.+....+...+.|+++.-+. ..|
T Consensus 100 ~~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~t~vvi~th~h-~~D 175 (246)
T TIGR02964 100 APHVVLFGAGHVGRALVRALAPLPCRVTWVDSREAEFPEDLPDG---VATLVTDEPEAEVAEAPPGSYFLVLTHDH-ALD 175 (246)
T ss_pred CCEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcccccccCCCC---ceEEecCCHHHHHhcCCCCcEEEEEeCCh-HHH
Confidence 46899999999999999999999999999997766221111001 01123455677766565567888887553 444
Q ss_pred -HHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccc
Q psy9637 84 -DFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGL 122 (490)
Q Consensus 84 -~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi 122 (490)
.++..+++. +...+|=+=.| -....++.+.+.+.|+
T Consensus 176 ~~~L~~aL~~--~~~~YIG~lGS-r~k~~~~~~~L~~~G~ 212 (246)
T TIGR02964 176 LELCHAALRR--GDFAYFGLIGS-KTKRARFEHRLRARGV 212 (246)
T ss_pred HHHHHHHHhC--CCCcEEEEeCC-HHHHHHHHHHHHhcCC
Confidence 444555422 22223322221 2445566677777665
|
Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products. |
| >PRK06847 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.039 Score=56.95 Aligned_cols=38 Identities=18% Similarity=0.239 Sum_probs=35.1
Q ss_pred CCCCCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChH
Q psy9637 1 MAAKGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTA 38 (490)
Q Consensus 1 M~~~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~ 38 (490)
|..+++|.|||.|..|..+|..|.+.|++|++++++++
T Consensus 1 m~~~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~ 38 (375)
T PRK06847 1 MAAVKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPE 38 (375)
T ss_pred CCCcceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 77778999999999999999999999999999998754
|
|
| >PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.12 Score=51.51 Aligned_cols=74 Identities=16% Similarity=0.352 Sum_probs=56.5
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHC----CCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCC
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDH----GFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAG 79 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~----G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~ 79 (490)
+++.|||- ..+|.++|..|.++ +..|++++.. +.++++.+.+ +|+||.++.-+
T Consensus 154 k~vvViGrS~iVGkPla~lL~~~~~~~~AtVtvchs~-------------------T~~l~~~~~~---ADIvV~AvG~p 211 (287)
T PRK14181 154 RHVAIVGRSNIVGKPLAALLMQKHPDTNATVTLLHSQ-------------------SENLTEILKT---ADIIIAAIGVP 211 (287)
T ss_pred CEEEEECCCccchHHHHHHHHhCcCCCCCEEEEeCCC-------------------CCCHHHHHhh---CCEEEEccCCc
Confidence 57999995 67899999999988 7899987642 3466677776 99999999775
Q ss_pred chHHHHHHhhcccCCCCCEEEcCCCCC
Q psy9637 80 SAVDDFIDKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 80 ~~v~~vl~~l~~~l~~g~iiId~s~~~ 106 (490)
.-+. . ..+++|.+|||.|...
T Consensus 212 ~~i~---~---~~ik~GavVIDvGin~ 232 (287)
T PRK14181 212 LFIK---E---EMIAEKAVIVDVGTSR 232 (287)
T ss_pred CccC---H---HHcCCCCEEEEecccc
Confidence 3221 1 2467999999999653
|
|
| >TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.1 Score=53.73 Aligned_cols=94 Identities=12% Similarity=0.177 Sum_probs=55.7
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCC-CeEEEE-eCChHHHHHHHHcc-------cCC--CCeecc-CCHHHHHhhCCCCcE
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDHG-FTVVAY-NRTTAKVDSFLANE-------AKG--TNIIGA-HSLEELVKNLKKPRR 71 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~G-~~V~v~-dr~~~~~~~l~~~g-------~~~--~~i~~~-~s~~e~v~~l~~~dv 71 (490)
+||+|+|. |.||..+++.|.++. ++|... +.+++.-+.+.+.. ... ..+... .+++ .. +++|+
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~Dv 76 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKVVASPRSAGKRYGEAVKWIEPGDMPEYVRDLPIVEPEPV-AS---KDVDI 76 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCceEEEEEEChhhcCCcchhhccccccCCCccccceeEEEeCCHH-Hh---ccCCE
Confidence 48999995 999999999998876 577655 55433222221110 000 001111 1222 22 34899
Q ss_pred EEEecCCCchHHHHHHhhcccCCCCCEEEcCCCCC
Q psy9637 72 VMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 72 Iil~vp~~~~v~~vl~~l~~~l~~g~iiId~s~~~ 106 (490)
|++++|.+ ...++...+ ...|..|||.|..+
T Consensus 77 Vf~a~p~~-~s~~~~~~~---~~~G~~VIDlsg~f 107 (341)
T TIGR00978 77 VFSALPSE-VAEEVEPKL---AEAGKPVFSNASNH 107 (341)
T ss_pred EEEeCCHH-HHHHHHHHH---HHCCCEEEECChhh
Confidence 99999996 444454433 34688899988753
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan. |
| >PRK06180 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.61 E-value=0.23 Score=49.04 Aligned_cols=45 Identities=24% Similarity=0.257 Sum_probs=37.0
Q ss_pred CCCCCcEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q psy9637 1 MAAKGDIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLA 45 (490)
Q Consensus 1 M~~~~~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~ 45 (490)
|..+++|-|.|. |.+|..+++.|+++|++|++.+|++++.+.+.+
T Consensus 1 ~~~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~l~~ 46 (277)
T PRK06180 1 MSSMKTWLITGVSSGFGRALAQAALAAGHRVVGTVRSEAARADFEA 46 (277)
T ss_pred CCCCCEEEEecCCChHHHHHHHHHHhCcCEEEEEeCCHHHHHHHHh
Confidence 433456888875 999999999999999999999999887766543
|
|
| >PRK07454 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.53 E-value=0.2 Score=48.04 Aligned_cols=42 Identities=12% Similarity=0.258 Sum_probs=35.2
Q ss_pred CCCcEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHH
Q psy9637 3 AKGDIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFL 44 (490)
Q Consensus 3 ~~~~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~ 44 (490)
.++++-|.|. |.+|..+++.|+++|++|++.+|++++.+.+.
T Consensus 5 ~~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~ 47 (241)
T PRK07454 5 SMPRALITGASSGIGKATALAFAKAGWDLALVARSQDALEALA 47 (241)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 3456788874 99999999999999999999999987766544
|
|
| >PRK14031 glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.52 E-value=0.19 Score=53.33 Aligned_cols=113 Identities=16% Similarity=0.084 Sum_probs=69.3
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEE-Ee----------CChHHHHH---HHHc-ccC----CC--CeeccCCHHHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVA-YN----------RTTAKVDS---FLAN-EAK----GT--NIIGAHSLEELV 63 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v-~d----------r~~~~~~~---l~~~-g~~----~~--~i~~~~s~~e~v 63 (490)
++|.|.|.|++|...|+.|.+.|..|++ .| .+.+++.. +... ... .. +.. ..+.+++.
T Consensus 229 ~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD~~G~iy~~~Gld~~~l~~~~~~k~~~~~~v~~~~~~~ga~-~i~~d~~~ 307 (444)
T PRK14031 229 KVCLVSGSGNVAQYTAEKVLELGGKVVTMSDSDGYIYDPDGIDREKLDYIMELKNLYRGRIREYAEKYGCK-YVEGARPW 307 (444)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHHHhhcCCchhhhHhhcCCE-EcCCcccc
Confidence 6899999999999999999999999986 56 55555431 1111 000 00 011 11333332
Q ss_pred hhCCCCcEEEEecCCCchHHHHHHhhcccCCCC-CEEEcCCCCChHHHHHHHHHHHHcccccc
Q psy9637 64 KNLKKPRRVMMLVKAGSAVDDFIDKLVPLLEKG-DIIIDGGNSEYQDTDRRSKALEAKGLLYV 125 (490)
Q Consensus 64 ~~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g-~iiId~s~~~~~~~~~~~~~l~~~gi~~l 125 (490)
. ..||+++-|.-......+....|.. ++ .+|+.++|. | .+.+..+.+.++|+.++
T Consensus 308 ~--~~cDIliPaAl~n~I~~~na~~l~a---~g~~~V~EgAN~-P-~t~eA~~~L~~rgI~~~ 363 (444)
T PRK14031 308 G--EKGDIALPSATQNELNGDDARQLVA---NGVIAVSEGANM-P-STPEAIKVFQDAKILYA 363 (444)
T ss_pred c--CCCcEEeecccccccCHHHHHHHHh---cCCeEEECCCCC-C-CCHHHHHHHHHCCcEEe
Confidence 2 1388888666554444444454432 22 378888887 3 45556678888998775
|
|
| >PLN02383 aspartate semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=94.50 E-value=0.1 Score=53.81 Aligned_cols=91 Identities=14% Similarity=0.311 Sum_probs=56.4
Q ss_pred CCCcEEEEcc-cHHHHHHHHHHHHCCCe---EEEE--eCChHHHHHHHHcccCCCCeecc-CCHHHHHhhCCCCcEEEEe
Q psy9637 3 AKGDIGLIGL-AVMGQNLILNMNDHGFT---VVAY--NRTTAKVDSFLANEAKGTNIIGA-HSLEELVKNLKKPRRVMML 75 (490)
Q Consensus 3 ~~~~IgiIGl-G~MG~~lA~~L~~~G~~---V~v~--dr~~~~~~~l~~~g~~~~~i~~~-~s~~e~v~~l~~~dvIil~ 75 (490)
..+||+|||. |..|.-+.+.|.+.+|+ +... .|+..+.-.+ .+ . .+... .+.+++ +. +|+||++
T Consensus 6 ~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~--~~-~--~~~v~~~~~~~~-~~---~D~vf~a 76 (344)
T PLN02383 6 NGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTF--EG-R--DYTVEELTEDSF-DG---VDIALFS 76 (344)
T ss_pred CCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeee--cC-c--eeEEEeCCHHHH-cC---CCEEEEC
Confidence 3478999995 99999999999998884 2222 3332221111 11 1 12111 123333 43 8999999
Q ss_pred cCCCchHHHHHHhhcccCCCCCEEEcCCCCC
Q psy9637 76 VKAGSAVDDFIDKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 76 vp~~~~v~~vl~~l~~~l~~g~iiId~s~~~ 106 (490)
+|.+ ...++...+. ..|..|||.|.-+
T Consensus 77 ~p~~-~s~~~~~~~~---~~g~~VIDlS~~f 103 (344)
T PLN02383 77 AGGS-ISKKFGPIAV---DKGAVVVDNSSAF 103 (344)
T ss_pred CCcH-HHHHHHHHHH---hCCCEEEECCchh
Confidence 9996 5555555432 4689999999743
|
|
| >PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.48 E-value=0.41 Score=51.08 Aligned_cols=33 Identities=24% Similarity=0.333 Sum_probs=30.4
Q ss_pred cEEEEcccHHHHHHHHHHHHCCCeEEEEeCChH
Q psy9637 6 DIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTA 38 (490)
Q Consensus 6 ~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~ 38 (490)
||.|||+|..|.+.|+.|.+.|++|+++|+++.
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~ 34 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDS 34 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCc
Confidence 699999999999999999999999999997643
|
|
| >PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional | Back alignment and domain information |
|---|
Probab=94.44 E-value=0.17 Score=55.28 Aligned_cols=41 Identities=20% Similarity=0.260 Sum_probs=35.5
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLA 45 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~ 45 (490)
+.|.|.|. |.+|..+++.|++.|++|++++|+.++.+.+.+
T Consensus 81 KvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~ 122 (576)
T PLN03209 81 DLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQ 122 (576)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH
Confidence 45778885 999999999999999999999999988776543
|
|
| >PRK07877 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.12 Score=58.04 Aligned_cols=124 Identities=15% Similarity=0.200 Sum_probs=74.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCC--eEEEEeCChHHHHHHHHcccCCCCe--eccCCHHHHHhhCCCCcEEEEecCCC
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGF--TVVAYNRTTAKVDSFLANEAKGTNI--IGAHSLEELVKNLKKPRRVMMLVKAG 79 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~g~~~~~i--~~~~s~~e~v~~l~~~dvIil~vp~~ 79 (490)
..+|+|||+| +|+..|..|++.|. ++++.|.+.=....+.........+ .-+...++.+..+ .+++-|.+++..
T Consensus 107 ~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~i-np~i~v~~~~~~ 184 (722)
T PRK07877 107 RLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAEL-DPYLPVEVFTDG 184 (722)
T ss_pred cCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHH-CCCCEEEEEecc
Confidence 3689999999 89999999999995 7888876532221221110000000 0122233333333 267777777775
Q ss_pred chHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCCCcc
Q psy9637 80 SAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGGED 134 (490)
Q Consensus 80 ~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg~~ 134 (490)
...+-+++++ ..-|+|||+.-.. ..-..+.+.+.++++.++.+...+|..
T Consensus 185 -i~~~n~~~~l---~~~DlVvD~~D~~-~~R~~ln~~a~~~~iP~i~~~~~~g~~ 234 (722)
T PRK07877 185 -LTEDNVDAFL---DGLDVVVEECDSL-DVKVLLREAARARRIPVLMATSDRGLL 234 (722)
T ss_pred -CCHHHHHHHh---cCCCEEEECCCCH-HHHHHHHHHHHHcCCCEEEEcCCCCCc
Confidence 3344455554 3459999998754 333344477788899888776555543
|
|
| >PRK10537 voltage-gated potassium channel; Provisional | Back alignment and domain information |
|---|
Probab=94.36 E-value=0.42 Score=50.14 Aligned_cols=110 Identities=13% Similarity=0.136 Sum_probs=65.5
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHh--hCCCCcEEEEecCCCchH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVK--NLKKPRRVMMLVKAGSAV 82 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~--~l~~~dvIil~vp~~~~v 82 (490)
..|-|+|.|.+|..+++.|.+.|++|++.|.++ .+...+.+.. -+..-.+-.+..+ .+++++.|+++.+++...
T Consensus 241 ~HvII~G~g~lg~~v~~~L~~~g~~vvVId~d~--~~~~~~~g~~--vI~GD~td~e~L~~AgI~~A~aVI~~t~dD~~N 316 (393)
T PRK10537 241 DHFIICGHSPLAINTYLGLRQRGQAVTVIVPLG--LEHRLPDDAD--LIPGDSSDSAVLKKAGAARARAILALRDNDADN 316 (393)
T ss_pred CeEEEECCChHHHHHHHHHHHCCCCEEEEECch--hhhhccCCCc--EEEeCCCCHHHHHhcCcccCCEEEEcCCChHHH
Confidence 458899999999999999999999999998763 2333322221 1222222233332 466799999988886433
Q ss_pred HHHHHhhcccCCC-CCEEEcCCCCChHHHHHHHHHHHHcccccc
Q psy9637 83 DDFIDKLVPLLEK-GDIIIDGGNSEYQDTDRRSKALEAKGLLYV 125 (490)
Q Consensus 83 ~~vl~~l~~~l~~-g~iiId~s~~~~~~~~~~~~~l~~~gi~~l 125 (490)
..++.. ...+.| ..+|+-..+. +..+.+++.|...+
T Consensus 317 l~ivL~-ar~l~p~~kIIa~v~~~------~~~~~L~~~GaD~V 353 (393)
T PRK10537 317 AFVVLA-AKEMSSDVKTVAAVNDS------KNLEKIKRVHPDMI 353 (393)
T ss_pred HHHHHH-HHHhCCCCcEEEEECCH------HHHHHHHhcCCCEE
Confidence 333322 233444 4566655431 22345555666543
|
|
| >PRK05600 thiamine biosynthesis protein ThiF; Validated | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.14 Score=53.26 Aligned_cols=120 Identities=18% Similarity=0.227 Sum_probs=69.1
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHccc-CCCCe--eccCCHHHHHhhCCCCcEEEEecCCCc
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGF-TVVAYNRTTAKVDSFLANEA-KGTNI--IGAHSLEELVKNLKKPRRVMMLVKAGS 80 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~g~-~~~~i--~~~~s~~e~v~~l~~~dvIil~vp~~~ 80 (490)
.+|.|||+|.+|..++.+|+..|. +++++|.+.=....+..+-. ....+ .-+....+.+..+ .+++-|...+..
T Consensus 42 ~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~-np~v~i~~~~~~- 119 (370)
T PRK05600 42 ARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEI-QPDIRVNALRER- 119 (370)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHH-CCCCeeEEeeee-
Confidence 589999999999999999999996 89999987432222221100 00000 0122222333322 255666666542
Q ss_pred hHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCC
Q psy9637 81 AVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVS 130 (490)
Q Consensus 81 ~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vs 130 (490)
...+-+.++ ++.-|+|||++-. +..-..+.+.+...++.|+.+.+.
T Consensus 120 i~~~~~~~~---~~~~DlVid~~Dn-~~~r~~in~~~~~~~iP~v~~~~~ 165 (370)
T PRK05600 120 LTAENAVEL---LNGVDLVLDGSDS-FATKFLVADAAEITGTPLVWGTVL 165 (370)
T ss_pred cCHHHHHHH---HhCCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEEEe
Confidence 222223333 3456899999865 333333346677778888777654
|
|
| >cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases | Back alignment and domain information |
|---|
Probab=94.31 E-value=0.29 Score=52.06 Aligned_cols=71 Identities=13% Similarity=0.155 Sum_probs=50.0
Q ss_pred CcEEEEcccHHHHH--HHHHHHHC-----CCeEEEEeCChHHHHHHHH-------cccCCCCeeccCCHHHHHhhCCCCc
Q psy9637 5 GDIGLIGLAVMGQN--LILNMNDH-----GFTVVAYNRTTAKVDSFLA-------NEAKGTNIIGAHSLEELVKNLKKPR 70 (490)
Q Consensus 5 ~~IgiIGlG~MG~~--lA~~L~~~-----G~~V~v~dr~~~~~~~l~~-------~g~~~~~i~~~~s~~e~v~~l~~~d 70 (490)
|||+|||.|.. .. +...|+.. +-+|+.+|.++++.+.... ......++..++|..++++. +|
T Consensus 1 ~KI~iIGaGS~-~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~l~~~~~~~~g~~~~v~~Ttdr~eAl~g---AD 76 (437)
T cd05298 1 FKIVIAGGGST-YTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEAVKILFKENYPEIKFVYTTDPEEAFTD---AD 76 (437)
T ss_pred CeEEEECCcHH-HHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHHHHHHHHHhhCCCeEEEEECCHHHHhCC---CC
Confidence 58999999985 32 34444433 4689999999988765322 11113467788999998887 99
Q ss_pred EEEEecCCC
Q psy9637 71 RVMMLVKAG 79 (490)
Q Consensus 71 vIil~vp~~ 79 (490)
+||+.+-.+
T Consensus 77 fVi~~irvG 85 (437)
T cd05298 77 FVFAQIRVG 85 (437)
T ss_pred EEEEEeeeC
Confidence 999998554
|
Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas |
| >COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.31 E-value=0.31 Score=51.37 Aligned_cols=110 Identities=11% Similarity=0.103 Sum_probs=71.9
Q ss_pred CCcEEEEcccHHHHHH-HHHHHH-----CCCeEEEEeCChHHHHH-------HHHcccCCCCeeccCCHHHHHhhCCCCc
Q psy9637 4 KGDIGLIGLAVMGQNL-ILNMND-----HGFTVVAYNRTTAKVDS-------FLANEAKGTNIIGAHSLEELVKNLKKPR 70 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~l-A~~L~~-----~G~~V~v~dr~~~~~~~-------l~~~g~~~~~i~~~~s~~e~v~~l~~~d 70 (490)
+.||+|||.|....+. ...+.. .+.++..||.++++.+. +.++.....++..++|.+++++. +|
T Consensus 3 ~~KI~iIGgGSt~tp~~v~g~l~~~e~l~~~el~L~Did~~r~~~i~~~~~~~v~~~g~~~kv~~ttd~~eAl~g---Ad 79 (442)
T COG1486 3 KFKIVIIGGGSTYTPKLLLGDLARTEELPVRELALYDIDEERLKIIAILAKKLVEEAGAPVKVEATTDRREALEG---AD 79 (442)
T ss_pred cceEEEECCCccccHHHHHHHHhcCccCCcceEEEEeCCHHHHHHHHHHHHHHHHhhCCCeEEEEecCHHHHhcC---CC
Confidence 4689999999988663 222222 25689999999988763 22222224567889999999887 99
Q ss_pred EEEEecCCCc-----------------------------------hHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHH
Q psy9637 71 RVMMLVKAGS-----------------------------------AVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSK 115 (490)
Q Consensus 71 vIil~vp~~~-----------------------------------~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~ 115 (490)
+|+.++-.+. .+-++++.+.. +.|+..+++-+|-....|+...+
T Consensus 80 fVi~~~rvG~l~~r~~De~IplkyG~~gqET~G~GGi~~glRtIpvildi~~~m~~-~~P~Aw~lNytNP~~~vTeAv~r 158 (442)
T COG1486 80 FVITQIRVGGLEAREKDERIPLKHGLYGQETNGPGGIFYGLRTIPVILDIAKDMEK-VCPNAWMLNYTNPAAIVTEAVRR 158 (442)
T ss_pred EEEEEEeeCCcccchhhhccchhhCccccccccccHHHhhcccchHHHHHHHHHHH-hCCCceEEeccChHHHHHHHHHH
Confidence 9999984432 11122233333 45889999999866665555544
Q ss_pred HH
Q psy9637 116 AL 117 (490)
Q Consensus 116 ~l 117 (490)
..
T Consensus 159 ~~ 160 (442)
T COG1486 159 LY 160 (442)
T ss_pred hC
Confidence 33
|
|
| >PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related | Back alignment and domain information |
|---|
Probab=94.30 E-value=0.15 Score=49.95 Aligned_cols=113 Identities=16% Similarity=0.268 Sum_probs=68.7
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEE--------EeCChHHHHHHHH---cccCCCCeeccC----------CH-HHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVA--------YNRTTAKVDSFLA---NEAKGTNIIGAH----------SL-EEL 62 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v--------~dr~~~~~~~l~~---~g~~~~~i~~~~----------s~-~e~ 62 (490)
+++.|-|.|.+|...|+.|.+.|..|++ ||.+.-.++.+.+ .... ++.... +. +++
T Consensus 33 ~~v~IqGfG~VG~~~a~~l~~~Ga~vv~vsD~~G~i~~~~Gld~~~l~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~i 110 (244)
T PF00208_consen 33 KRVAIQGFGNVGSHAARFLAELGAKVVAVSDSSGAIYDPDGLDVEELLRIKEERGS--RVDDYPLESPDGAEYIPNDDEI 110 (244)
T ss_dssp CEEEEEESSHHHHHHHHHHHHTTEEEEEEEESSEEEEETTEEHHHHHHHHHHHHSS--HSTTGTHTCSSTSEEECHHCHG
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEEecCceEEEcCCCchHHHHHHHHHHhCC--cccccccccccceeEecccccc
Confidence 6899999999999999999999988765 4665444554443 2111 011111 12 144
Q ss_pred HhhCCCCcEEEEecCCCchHHHHHH-hhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccc
Q psy9637 63 VKNLKKPRRVMMLVKAGSAVDDFID-KLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVG 126 (490)
Q Consensus 63 v~~l~~~dvIil~vp~~~~v~~vl~-~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld 126 (490)
... ++|+++-|--.+....+.+. .+.+ .=++|+...|.... .+..+.|.++|+.++.
T Consensus 111 l~~--~~DiliP~A~~~~I~~~~~~~~i~~---~akiIvegAN~p~t--~~a~~~L~~rGI~viP 168 (244)
T PF00208_consen 111 LSV--DCDILIPCALGNVINEDNAPSLIKS---GAKIIVEGANGPLT--PEADEILRERGILVIP 168 (244)
T ss_dssp GTS--SSSEEEEESSSTSBSCHHHCHCHHT---T-SEEEESSSSSBS--HHHHHHHHHTT-EEE-
T ss_pred ccc--cccEEEEcCCCCeeCHHHHHHHHhc---cCcEEEeCcchhcc--HHHHHHHHHCCCEEEc
Confidence 432 48999988655444444444 3321 24789999987543 3333588999987753
|
They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C .... |
| >PRK07060 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.16 Score=48.81 Aligned_cols=41 Identities=22% Similarity=0.344 Sum_probs=35.9
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLA 45 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~ 45 (490)
+++.|.|. |.+|..++..|+++|++|++.+|++++.+.+.+
T Consensus 10 ~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~ 51 (245)
T PRK07060 10 KSVLVTGASSGIGRACAVALAQRGARVVAAARNAAALDRLAG 51 (245)
T ss_pred CEEEEeCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 47889987 899999999999999999999999887766543
|
|
| >PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.25 E-value=0.17 Score=50.85 Aligned_cols=74 Identities=15% Similarity=0.274 Sum_probs=55.8
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHC----CCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCC
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDH----GFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAG 79 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~----G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~ 79 (490)
++|.|||- ..+|.++|..|.++ +..|+++... +.++++.+.+ +|+||.++.-+
T Consensus 162 k~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~hs~-------------------T~~l~~~~~~---ADIvVsAvGkp 219 (297)
T PRK14168 162 AEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVHTR-------------------SKNLARHCQR---ADILIVAAGVP 219 (297)
T ss_pred CEEEEECCCCcccHHHHHHHHhcccCCCCEEEEecCC-------------------CcCHHHHHhh---CCEEEEecCCc
Confidence 57999995 77899999999988 6889987542 3456667776 99999999665
Q ss_pred chHHHHHHhhcccCCCCCEEEcCCCCC
Q psy9637 80 SAVDDFIDKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 80 ~~v~~vl~~l~~~l~~g~iiId~s~~~ 106 (490)
.-+. ...+++|.+|||.|...
T Consensus 220 ~~i~------~~~ik~gavVIDvGin~ 240 (297)
T PRK14168 220 NLVK------PEWIKPGATVIDVGVNR 240 (297)
T ss_pred CccC------HHHcCCCCEEEecCCCc
Confidence 3221 12467999999999643
|
|
| >PRK12429 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.25 E-value=0.23 Score=48.03 Aligned_cols=41 Identities=15% Similarity=0.143 Sum_probs=35.7
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHH
Q psy9637 4 KGDIGLIG-LAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFL 44 (490)
Q Consensus 4 ~~~IgiIG-lG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~ 44 (490)
.++|-|.| .|.+|..+++.|+++|++|++.+|++++.+.+.
T Consensus 4 ~~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~ 45 (258)
T PRK12429 4 GKVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAA 45 (258)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHH
Confidence 35788898 699999999999999999999999988776654
|
|
| >TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=94.21 E-value=0.061 Score=55.29 Aligned_cols=89 Identities=12% Similarity=0.262 Sum_probs=56.3
Q ss_pred cEEEEc-ccHHHHHHHHHHHHCCCeEE---EEeCChHHHHHHHHcccCCCCeecc-CCHHHHHhhCCCCcEEEEecCCCc
Q psy9637 6 DIGLIG-LAVMGQNLILNMNDHGFTVV---AYNRTTAKVDSFLANEAKGTNIIGA-HSLEELVKNLKKPRRVMMLVKAGS 80 (490)
Q Consensus 6 ~IgiIG-lG~MG~~lA~~L~~~G~~V~---v~dr~~~~~~~l~~~g~~~~~i~~~-~s~~e~v~~l~~~dvIil~vp~~~ 80 (490)
||+||| .|..|..|.+.|.+++|++. .+.++...-+.+...+ ..+... .+..++ . ..|+||+|+|.+
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~~~~---~~~~~~~~~~~~~-~---~~D~v~~a~g~~- 72 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRKVTFKG---KELEVNEAKIESF-E---GIDIALFSAGGS- 72 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCeeeeCC---eeEEEEeCChHHh-c---CCCEEEECCCHH-
Confidence 589999 69999999999999998743 3444433222222111 112111 122233 3 489999999996
Q ss_pred hHHHHHHhhcccCCCCCEEEcCCCC
Q psy9637 81 AVDDFIDKLVPLLEKGDIIIDGGNS 105 (490)
Q Consensus 81 ~v~~vl~~l~~~l~~g~iiId~s~~ 105 (490)
...+....+ +..|..|||.|..
T Consensus 73 ~s~~~a~~~---~~~G~~VID~ss~ 94 (339)
T TIGR01296 73 VSKEFAPKA---AKCGAIVIDNTSA 94 (339)
T ss_pred HHHHHHHHH---HHCCCEEEECCHH
Confidence 555555544 3467899999874
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978. |
| >PRK12409 D-amino acid dehydrogenase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=94.18 E-value=0.058 Score=56.57 Aligned_cols=33 Identities=21% Similarity=0.540 Sum_probs=31.2
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCCh
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTT 37 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~ 37 (490)
.+|.|||.|.+|...|..|++.|++|+++|+++
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 489999999999999999999999999999875
|
|
| >PRK07236 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.18 E-value=0.062 Score=55.94 Aligned_cols=34 Identities=21% Similarity=0.276 Sum_probs=31.9
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTA 38 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~ 38 (490)
++|.|||.|..|..+|..|+++|++|+++++.+.
T Consensus 7 ~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (386)
T PRK07236 7 PRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPT 40 (386)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 5899999999999999999999999999998864
|
|
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=94.17 E-value=0.17 Score=51.11 Aligned_cols=108 Identities=18% Similarity=0.128 Sum_probs=71.6
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCch---
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSA--- 81 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~--- 81 (490)
.+|+|||--.==..++..|.++|++|.++.-+.+.. ...| +..+++.++++.. +|+|++.+|....
T Consensus 3 ~~~~v~ggd~r~~~~~~~l~~~G~~v~~~g~~~~~~---~~~g-----~~~~~~~~~~~~~---ad~ii~~~p~~~~~~~ 71 (296)
T PRK08306 3 KHIAVIGGDARQLELIRKLVELGAKVSLVGFDQLDH---GFTG-----ATKSSSLEEALSD---VDVIILPVPGTNDEGN 71 (296)
T ss_pred cEEEEEcCcHHHHHHHHHHHHCCCEEEEEecccccc---ccCC-----ceeeccHHHHhcc---CCEEEECCccccCCce
Confidence 579999988888999999999999999876543211 1112 2346677777766 8999999886311
Q ss_pred HHHH-------H-HhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccC
Q psy9637 82 VDDF-------I-DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCG 128 (490)
Q Consensus 82 v~~v-------l-~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~ 128 (490)
+... + .+++..++++.+++ .|...+... +.+.++|+..++.+
T Consensus 72 i~~~~~~~~~~~~~~~l~~l~~~~~v~-~G~~~~~~~----~~~~~~gi~~~~~~ 121 (296)
T PRK08306 72 VDTVFSNEKLVLTEELLELTPEHCTIF-SGIANPYLK----ELAKETNRKLVELF 121 (296)
T ss_pred eeccccccCCcchHHHHHhcCCCCEEE-EecCCHHHH----HHHHHCCCeEEEEe
Confidence 1111 1 34566788898555 455554422 44668898877654
|
|
| >PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=94.14 E-value=0.19 Score=47.94 Aligned_cols=40 Identities=18% Similarity=0.339 Sum_probs=34.6
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHH
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFL 44 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~ 44 (490)
++|-|.|. |.+|..+++.|+++|++|++.+|++++.+.+.
T Consensus 6 ~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~ 46 (246)
T PRK05653 6 KTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEALA 46 (246)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHH
Confidence 57889985 99999999999999999999999987765543
|
|
| >PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.11 E-value=0.18 Score=50.53 Aligned_cols=74 Identities=15% Similarity=0.283 Sum_probs=56.6
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHC----CCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCC
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDH----GFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAG 79 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~----G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~ 79 (490)
+++.|||- ..+|.++|..|.++ +..|+++... +.++.+.+.+ +|+||.++.-+
T Consensus 158 K~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~-------------------T~nl~~~~~~---ADIvIsAvGkp 215 (293)
T PRK14185 158 KKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSR-------------------SKNLKKECLE---ADIIIAALGQP 215 (293)
T ss_pred CEEEEECCCccchHHHHHHHHcCCCCCCCEEEEecCC-------------------CCCHHHHHhh---CCEEEEccCCc
Confidence 57999995 67899999999988 5788887642 3466677776 99999999876
Q ss_pred chHHHHHHhhcccCCCCCEEEcCCCCC
Q psy9637 80 SAVDDFIDKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 80 ~~v~~vl~~l~~~l~~g~iiId~s~~~ 106 (490)
.-+. ...+++|.+|||.|...
T Consensus 216 ~~i~------~~~vk~gavVIDvGin~ 236 (293)
T PRK14185 216 EFVK------ADMVKEGAVVIDVGTTR 236 (293)
T ss_pred CccC------HHHcCCCCEEEEecCcc
Confidence 4322 13467999999999753
|
|
| >TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form | Back alignment and domain information |
|---|
Probab=94.08 E-value=0.14 Score=51.80 Aligned_cols=81 Identities=10% Similarity=0.103 Sum_probs=53.4
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
.||+|+|. |..|.-|.+.|.++-+ +-+...+.+.. + ...+.+++.++ .|++|+++|++ ...
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~HP~-~el~~l~s~~~--~-----------~~~~~~~~~~~---~D~vFlalp~~-~s~ 63 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGRDD-IELLSIAPDRR--K-----------DAAERAKLLNA---ADVAILCLPDD-AAR 63 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCCCC-eEEEEEecccc--c-----------CcCCHhHhhcC---CCEEEECCCHH-HHH
Confidence 47999985 9999999999998743 33322221110 1 02244555555 89999999997 555
Q ss_pred HHHHhhcccCCCCCEEEcCCCCC
Q psy9637 84 DFIDKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 84 ~vl~~l~~~l~~g~iiId~s~~~ 106 (490)
+....+. ..|..|||.|..+
T Consensus 64 ~~~~~~~---~~g~~VIDlSadf 83 (310)
T TIGR01851 64 EAVSLVD---NPNTCIIDASTAY 83 (310)
T ss_pred HHHHHHH---hCCCEEEECChHH
Confidence 5555442 4688999999743
|
This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment. |
| >PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.08 E-value=0.085 Score=53.48 Aligned_cols=81 Identities=11% Similarity=0.171 Sum_probs=52.9
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCch
Q psy9637 4 KGDIGLIG-LAVMGQNLILNMNDHGF-TVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSA 81 (490)
Q Consensus 4 ~~~IgiIG-lG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~ 81 (490)
|+||+||| .|..|..+.+.|.++.+ ++.....+..+ . + .+.++..++ +|++|+++|.+ .
T Consensus 2 ~~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~~---------~---~---~~~~~~~~~---~DvvFlalp~~-~ 62 (313)
T PRK11863 2 KPKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKRK---------D---A---AARRELLNA---ADVAILCLPDD-A 62 (313)
T ss_pred CcEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCCC---------c---c---cCchhhhcC---CCEEEECCCHH-H
Confidence 47899999 69999999999998763 33222221110 0 1 122233344 89999999996 5
Q ss_pred HHHHHHhhcccCCCCCEEEcCCCCC
Q psy9637 82 VDDFIDKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 82 v~~vl~~l~~~l~~g~iiId~s~~~ 106 (490)
..+....+. ..|..|||.|.-+
T Consensus 63 s~~~~~~~~---~~g~~VIDlSadf 84 (313)
T PRK11863 63 AREAVALID---NPATRVIDASTAH 84 (313)
T ss_pred HHHHHHHHH---hCCCEEEECChhh
Confidence 555555543 4688999999743
|
|
| >PRK06182 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.04 E-value=0.41 Score=46.99 Aligned_cols=41 Identities=20% Similarity=0.291 Sum_probs=35.0
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHH
Q psy9637 4 KGDIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFL 44 (490)
Q Consensus 4 ~~~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~ 44 (490)
+++|-|.|. |.+|..+++.|++.|++|++.+|++++.+.+.
T Consensus 3 ~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~ 44 (273)
T PRK06182 3 KKVALVTGASSGIGKATARRLAAQGYTVYGAARRVDKMEDLA 44 (273)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 357888885 89999999999999999999999988766543
|
|
| >TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein | Back alignment and domain information |
|---|
Probab=94.01 E-value=0.15 Score=49.81 Aligned_cols=34 Identities=21% Similarity=0.346 Sum_probs=29.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCC-----------CeEEEEeCCh
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHG-----------FTVVAYNRTT 37 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G-----------~~V~v~dr~~ 37 (490)
..+|.|||+|-.|..++.+|++.| .+++++|.+.
T Consensus 11 ~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~ 55 (244)
T TIGR03736 11 PVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDT 55 (244)
T ss_pred CCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCE
Confidence 468999999999999999999874 2889998763
|
A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein. |
| >PRK15116 sulfur acceptor protein CsdL; Provisional | Back alignment and domain information |
|---|
Probab=93.97 E-value=0.27 Score=48.80 Aligned_cols=119 Identities=13% Similarity=0.131 Sum_probs=66.5
Q ss_pred CcEEEEcccHHHHHHHHHHHHCC-CeEEEEeCChHHHHHHHHccc-CCCCe--eccCCHHHHHhhCCCCcEEEEecCCCc
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHG-FTVVAYNRTTAKVDSFLANEA-KGTNI--IGAHSLEELVKNLKKPRRVMMLVKAGS 80 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G-~~V~v~dr~~~~~~~l~~~g~-~~~~i--~~~~s~~e~v~~l~~~dvIil~vp~~~ 80 (490)
.+|.|||+|-+|...|.+|++.| -+++++|.+.-....+..+.. ....+ .-++-..+-+..+ .|++-+..++..
T Consensus 31 s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~I-NP~~~V~~i~~~- 108 (268)
T PRK15116 31 AHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQI-NPECRVTVVDDF- 108 (268)
T ss_pred CCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHhH-CCCcEEEEEecc-
Confidence 58999999999999999999999 589999876433222221100 00000 0011122222222 255555555442
Q ss_pred hHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccC
Q psy9637 81 AVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCG 128 (490)
Q Consensus 81 ~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~ 128 (490)
...+-++.+.. ..-|+|||+.-.. .....+.+.+.+.++.|+.++
T Consensus 109 i~~e~~~~ll~--~~~D~VIdaiD~~-~~k~~L~~~c~~~~ip~I~~g 153 (268)
T PRK15116 109 ITPDNVAEYMS--AGFSYVIDAIDSV-RPKAALIAYCRRNKIPLVTTG 153 (268)
T ss_pred cChhhHHHHhc--CCCCEEEEcCCCH-HHHHHHHHHHHHcCCCEEEEC
Confidence 22222333331 2358999986532 334445577788888877653
|
|
| >PRK07411 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=93.89 E-value=0.23 Score=52.15 Aligned_cols=122 Identities=12% Similarity=0.079 Sum_probs=69.3
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHccc-CCCCe--eccCCHHHHHhhCCCCcEEEEecCCCc
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGF-TVVAYNRTTAKVDSFLANEA-KGTNI--IGAHSLEELVKNLKKPRRVMMLVKAGS 80 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~g~-~~~~i--~~~~s~~e~v~~l~~~dvIil~vp~~~ 80 (490)
.+|.|||+|-+|..++.+|+..|. +++++|.+.=....+..+-. ....+ .-+....+-+.++ .+++-+...+..
T Consensus 39 ~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~-np~v~v~~~~~~- 116 (390)
T PRK07411 39 ASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEI-NPYCQVDLYETR- 116 (390)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHH-CCCCeEEEEecc-
Confidence 589999999999999999999997 68888876433222221100 00000 0122223333222 256666666542
Q ss_pred hHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCCC
Q psy9637 81 AVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGG 132 (490)
Q Consensus 81 ~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg 132 (490)
...+-..+ .+..-|+|||+.-.. ..-..+.+.+...++.++.+.+.|-
T Consensus 117 ~~~~~~~~---~~~~~D~Vvd~~d~~-~~r~~ln~~~~~~~~p~v~~~~~g~ 164 (390)
T PRK07411 117 LSSENALD---ILAPYDVVVDGTDNF-PTRYLVNDACVLLNKPNVYGSIFRF 164 (390)
T ss_pred cCHHhHHH---HHhCCCEEEECCCCH-HHHHHHHHHHHHcCCCEEEEEEccC
Confidence 22222222 234568999997643 3333333666777888887766653
|
|
| >PRK06101 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.89 E-value=0.26 Score=47.43 Aligned_cols=41 Identities=22% Similarity=0.467 Sum_probs=35.5
Q ss_pred cEEEEc-ccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHc
Q psy9637 6 DIGLIG-LAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLAN 46 (490)
Q Consensus 6 ~IgiIG-lG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~ 46 (490)
++-|.| .|.+|..+++.|+++|++|++.+|++++.+.+.+.
T Consensus 3 ~vlItGas~giG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~ 44 (240)
T PRK06101 3 AVLITGATSGIGKQLALDYAKQGWQVIACGRNQSVLDELHTQ 44 (240)
T ss_pred EEEEEcCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHh
Confidence 566776 69999999999999999999999999887776553
|
|
| >PRK08309 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.85 E-value=0.45 Score=44.20 Aligned_cols=101 Identities=14% Similarity=0.038 Sum_probs=58.6
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
|++-|+|...||..++..|++.|++|.+.+|++++.+.+...... ... ...+-.-+.+...++.
T Consensus 1 m~vlVtGGtG~gg~la~~L~~~G~~V~v~~R~~~~~~~l~~~l~~-------------~~~---i~~~~~Dv~d~~sv~~ 64 (177)
T PRK08309 1 MHALVIGGTGMLKRVSLWLCEKGFHVSVIARREVKLENVKRESTT-------------PES---ITPLPLDYHDDDALKL 64 (177)
T ss_pred CEEEEECcCHHHHHHHHHHHHCcCEEEEEECCHHHHHHHHHHhhc-------------CCc---EEEEEccCCCHHHHHH
Confidence 468888876788889999999999999999998876665431100 000 1122223344445556
Q ss_pred HHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccc
Q psy9637 85 FIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLL 123 (490)
Q Consensus 85 vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~ 123 (490)
++++......+-++++..-- ..-.....+.+++.|+.
T Consensus 65 ~i~~~l~~~g~id~lv~~vh--~~~~~~~~~~~~~~gv~ 101 (177)
T PRK08309 65 AIKSTIEKNGPFDLAVAWIH--SSAKDALSVVCRELDGS 101 (177)
T ss_pred HHHHHHHHcCCCeEEEEecc--ccchhhHHHHHHHHccC
Confidence 66555443333345554432 23344445555555554
|
|
| >PLN00016 RNA-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=93.85 E-value=0.23 Score=51.67 Aligned_cols=37 Identities=22% Similarity=0.345 Sum_probs=32.9
Q ss_pred CCcEEEE----c-ccHHHHHHHHHHHHCCCeEEEEeCChHHH
Q psy9637 4 KGDIGLI----G-LAVMGQNLILNMNDHGFTVVAYNRTTAKV 40 (490)
Q Consensus 4 ~~~IgiI----G-lG~MG~~lA~~L~~~G~~V~v~dr~~~~~ 40 (490)
+++|.|+ | .|.+|..++..|+++||+|++.+|++...
T Consensus 52 ~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~~~~ 93 (378)
T PLN00016 52 KKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKEPS 93 (378)
T ss_pred cceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCCcch
Confidence 4689999 6 69999999999999999999999987653
|
|
| >COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.75 E-value=0.49 Score=46.44 Aligned_cols=35 Identities=23% Similarity=0.401 Sum_probs=28.3
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHHCC-CeEE-EEeCChH
Q psy9637 4 KGDIGLIGL-AVMGQNLILNMNDHG-FTVV-AYNRTTA 38 (490)
Q Consensus 4 ~~~IgiIGl-G~MG~~lA~~L~~~G-~~V~-v~dr~~~ 38 (490)
+|||+|+|. |+||+.+.+.+.+.. +++. .++|.+.
T Consensus 2 ~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~ 39 (266)
T COG0289 2 MIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGS 39 (266)
T ss_pred CceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecCCc
Confidence 579999998 999999999998765 4544 5787754
|
|
| >cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4 | Back alignment and domain information |
|---|
Probab=93.74 E-value=0.59 Score=49.57 Aligned_cols=72 Identities=17% Similarity=0.213 Sum_probs=50.7
Q ss_pred CcEEEEcccHH-HHHHHHHHHHC-----CCeEEEEeCChHHHHHHH-------HcccCCCCeeccCCHHHHHhhCCCCcE
Q psy9637 5 GDIGLIGLAVM-GQNLILNMNDH-----GFTVVAYNRTTAKVDSFL-------ANEAKGTNIIGAHSLEELVKNLKKPRR 71 (490)
Q Consensus 5 ~~IgiIGlG~M-G~~lA~~L~~~-----G~~V~v~dr~~~~~~~l~-------~~g~~~~~i~~~~s~~e~v~~l~~~dv 71 (490)
|||+|||.|.. ...+...|+.. +-+|+.+|.++++.+... +......++..++|.++++.. +|+
T Consensus 1 ~KI~iIGgGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~~l~~~~~~~~g~~~~v~~ttD~~~Al~g---ADf 77 (425)
T cd05197 1 VKIAIIGGGSSFTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTIAKRYVEEVGADIKFEKTMDLEDAIID---ADF 77 (425)
T ss_pred CEEEEECCchHhHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHHHHHHHHHHhhCCCeEEEEeCCHHHHhCC---CCE
Confidence 58999999984 22345555543 468999999998876532 221113467788999998887 999
Q ss_pred EEEecCCC
Q psy9637 72 VMMLVKAG 79 (490)
Q Consensus 72 Iil~vp~~ 79 (490)
||..+-.+
T Consensus 78 Vi~~irvG 85 (425)
T cd05197 78 VINQFRVG 85 (425)
T ss_pred EEEeeecC
Confidence 99998554
|
Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in |
| >PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=93.70 E-value=0.2 Score=56.04 Aligned_cols=34 Identities=18% Similarity=0.290 Sum_probs=31.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCCh
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTT 37 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~ 37 (490)
.++|.|||.|..|...|..|++.||+|++|++.+
T Consensus 310 ~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~ 343 (639)
T PRK12809 310 SEKVAVIGAGPAGLGCADILARAGVQVDVFDRHP 343 (639)
T ss_pred CCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCC
Confidence 3689999999999999999999999999999876
|
|
| >PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.70 E-value=0.24 Score=49.75 Aligned_cols=74 Identities=18% Similarity=0.304 Sum_probs=55.8
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHC----CCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCC
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDH----GFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAG 79 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~----G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~ 79 (490)
+++.|||- ..+|.++|..|.++ +..|+++... +.++++.+.+ +|+||.++.-+
T Consensus 158 k~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~-------------------T~~l~~~~~~---ADIvIsAvGkp 215 (297)
T PRK14167 158 ADVVVVGRSDIVGKPMANLLIQKADGGNATVTVCHSR-------------------TDDLAAKTRR---ADIVVAAAGVP 215 (297)
T ss_pred CEEEEECCCcccHHHHHHHHhcCccCCCCEEEEeCCC-------------------CCCHHHHHhh---CCEEEEccCCc
Confidence 57999995 67899999999987 7899987642 3456667776 99999998665
Q ss_pred chHHHHHHhhcccCCCCCEEEcCCCCC
Q psy9637 80 SAVDDFIDKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 80 ~~v~~vl~~l~~~l~~g~iiId~s~~~ 106 (490)
.-+. . ..+++|.+|||.|...
T Consensus 216 ~~i~---~---~~ik~gaiVIDvGin~ 236 (297)
T PRK14167 216 ELID---G---SMLSEGATVIDVGINR 236 (297)
T ss_pred CccC---H---HHcCCCCEEEEccccc
Confidence 3221 1 2467999999999643
|
|
| >cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2 | Back alignment and domain information |
|---|
Probab=93.69 E-value=0.13 Score=52.11 Aligned_cols=121 Identities=16% Similarity=0.216 Sum_probs=68.9
Q ss_pred cEEEEcccHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHccc-CCCCe--eccCCHHHHHhhCCCCcEEEEecCCCch
Q psy9637 6 DIGLIGLAVMGQNLILNMNDHGF-TVVAYNRTTAKVDSFLANEA-KGTNI--IGAHSLEELVKNLKKPRRVMMLVKAGSA 81 (490)
Q Consensus 6 ~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~g~-~~~~i--~~~~s~~e~v~~l~~~dvIil~vp~~~~ 81 (490)
||.|||+|.+|..++++|+..|. +++++|.+.-....+..+.. ....+ .-+....+.+.++ .+++-+...... .
T Consensus 1 kVlIVGaGGlG~EiaKnLal~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~l-Np~v~V~~~~~~-i 78 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSF-NPNVKIVAYHAN-I 78 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhcCCeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHH-CCCCeEEEEecc-C
Confidence 58999999999999999999997 68899877544443322210 00000 0012222333332 145555544332 1
Q ss_pred HHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCC
Q psy9637 82 VDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSG 131 (490)
Q Consensus 82 v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsG 131 (490)
.+.. .....++.=++||++.-. +..-....+.+...++.|+++++.|
T Consensus 79 ~~~~--~~~~f~~~~DvVv~a~Dn-~~ar~~in~~c~~~~ip~I~~gt~G 125 (312)
T cd01489 79 KDPD--FNVEFFKQFDLVFNALDN-LAARRHVNKMCLAADVPLIESGTTG 125 (312)
T ss_pred CCcc--chHHHHhcCCEEEECCCC-HHHHHHHHHHHHHCCCCEEEEecCc
Confidence 1110 011234456899988753 3333334477788899999988765
|
UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. |
| >PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G | Back alignment and domain information |
|---|
Probab=93.63 E-value=0.11 Score=40.21 Aligned_cols=30 Identities=17% Similarity=0.462 Sum_probs=27.2
Q ss_pred EEcccHHHHHHHHHHHHCCCeEEEEeCChH
Q psy9637 9 LIGLAVMGQNLILNMNDHGFTVVAYNRTTA 38 (490)
Q Consensus 9 iIGlG~MG~~lA~~L~~~G~~V~v~dr~~~ 38 (490)
|||.|.-|...|..|.++|++|+++++++.
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~ 30 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDR 30 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcc
Confidence 799999999999999999999999998854
|
... |
| >COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.59 E-value=0.11 Score=53.13 Aligned_cols=37 Identities=16% Similarity=0.362 Sum_probs=33.4
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVD 41 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~ 41 (490)
++|||||-|..|.-|+..-.+-|++|.+.|.+++.-.
T Consensus 2 ~tvgIlGGGQLgrMm~~aa~~lG~~v~vLdp~~~~PA 38 (375)
T COG0026 2 KTVGILGGGQLGRMMALAAARLGIKVIVLDPDADAPA 38 (375)
T ss_pred CeEEEEcCcHHHHHHHHHHHhcCCEEEEecCCCCCch
Confidence 5899999999999999999999999999998876543
|
|
| >PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase | Back alignment and domain information |
|---|
Probab=93.58 E-value=0.64 Score=48.72 Aligned_cols=38 Identities=18% Similarity=0.396 Sum_probs=33.3
Q ss_pred CCCcEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChHHH
Q psy9637 3 AKGDIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTAKV 40 (490)
Q Consensus 3 ~~~~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~~~ 40 (490)
..++|.|+|. |.+|..+++.|+++|++|++++|++.+.
T Consensus 59 ~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~~~~ 97 (390)
T PLN02657 59 KDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREKSGI 97 (390)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEechhhc
Confidence 3468999985 9999999999999999999999987643
|
|
| >PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional | Back alignment and domain information |
|---|
Probab=93.56 E-value=0.17 Score=51.87 Aligned_cols=40 Identities=13% Similarity=0.344 Sum_probs=33.6
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHHC-CCeEEEEeCChHHHHHH
Q psy9637 4 KGDIGLIGL-AVMGQNLILNMNDH-GFTVVAYNRTTAKVDSF 43 (490)
Q Consensus 4 ~~~IgiIGl-G~MG~~lA~~L~~~-G~~V~v~dr~~~~~~~l 43 (490)
||+|-|.|. |.+|+.++..|+++ ||+|++.||++++...+
T Consensus 1 m~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r~~~~~~~~ 42 (347)
T PRK11908 1 MKKVLILGVNGFIGHHLSKRILETTDWEVYGMDMQTDRLGDL 42 (347)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhCCCCeEEEEeCcHHHHHHh
Confidence 368999996 99999999999986 79999999987654443
|
|
| >PRK10538 malonic semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=93.52 E-value=0.48 Score=45.80 Aligned_cols=40 Identities=18% Similarity=0.255 Sum_probs=34.8
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHH
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFL 44 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~ 44 (490)
|+|-|+|. |..|..++..|+++|++|++.+|++++.+.+.
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~ 41 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELK 41 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 46888984 99999999999999999999999988766554
|
|
| >PRK08340 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.46 E-value=0.47 Score=46.17 Aligned_cols=40 Identities=18% Similarity=0.213 Sum_probs=34.4
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHH
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFL 44 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~ 44 (490)
|++-|.|. |.+|..+|+.|+++|++|++.+|++++.++..
T Consensus 1 m~vlItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~ 41 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKKGARVVISSRNEENLEKAL 41 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 46888875 88999999999999999999999988766554
|
|
| >KOG3007|consensus | Back alignment and domain information |
|---|
Probab=93.44 E-value=0.25 Score=48.36 Aligned_cols=112 Identities=15% Similarity=0.069 Sum_probs=76.4
Q ss_pred EEEEcccHHHHHHHHHHHHCC---CeEEEEeCChHHHHHHHHcccC---C--CCeeccCCHHHHHhhCCCCcEEEEecCC
Q psy9637 7 IGLIGLAVMGQNLILNMNDHG---FTVVAYNRTTAKVDSFLANEAK---G--TNIIGAHSLEELVKNLKKPRRVMMLVKA 78 (490)
Q Consensus 7 IgiIGlG~MG~~lA~~L~~~G---~~V~v~dr~~~~~~~l~~~g~~---~--~~i~~~~s~~e~v~~l~~~dvIil~vp~ 78 (490)
..++|.|.....+-.-..+.- .+|.+|||+++..+.+.+...+ . ..+..+.++++++.. +|+|+.++++
T Consensus 141 L~i~GsG~qA~~hi~ih~~~~pslreVrIwnht~e~A~~la~~lsk~~~~iqie~~~~qsl~~aV~~---sDIIs~atls 217 (333)
T KOG3007|consen 141 LTIFGSGLQAFWHIYIHIKLIPSLREVRIWNHTNEMALDLAKSLSKLFSNIQIELNQYQSLNGAVSN---SDIISGATLS 217 (333)
T ss_pred EEEEcccchhHHHHHHHHHhcccceEEEeecCChHHHHHHHHHhhhcccceEEEEEehhhhhccccc---CceEEecccc
Confidence 678999999887665544432 4799999999999888763221 1 123457788888876 9999999988
Q ss_pred CchHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccccccc
Q psy9637 79 GSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGC 127 (490)
Q Consensus 79 ~~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~ 127 (490)
..+. + ....++||.. ||.=.++-++..+.-+.+-+.+..|+|.
T Consensus 218 tePi---l--fgewlkpgth-IdlVGsf~p~mhEcDdelIq~a~vfVDs 260 (333)
T KOG3007|consen 218 TEPI---L--FGEWLKPGTH-IDLVGSFKPVMHECDDELIQSACVFVDS 260 (333)
T ss_pred CCce---e--eeeeecCCce-EeeeccCCchHHHHhHHHhhhheEEEec
Confidence 6432 1 1245777854 4543344455566667777788889887
|
|
| >cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like | Back alignment and domain information |
|---|
Probab=93.43 E-value=0.21 Score=48.60 Aligned_cols=122 Identities=16% Similarity=0.176 Sum_probs=66.9
Q ss_pred cEEEEcccHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHccc-CCCCe--eccCCHHHHHhhCCCCcEEEEecCCCch
Q psy9637 6 DIGLIGLAVMGQNLILNMNDHGF-TVVAYNRTTAKVDSFLANEA-KGTNI--IGAHSLEELVKNLKKPRRVMMLVKAGSA 81 (490)
Q Consensus 6 ~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~g~-~~~~i--~~~~s~~e~v~~l~~~dvIil~vp~~~~ 81 (490)
||.|||+|..|..++++|+..|+ +++++|.+.=....+..+.. ....+ .-+....+.+..+ .|++-+......-.
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~-np~v~i~~~~~~i~ 79 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDR-NPNCKVVPYQNKVG 79 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHH-CCCCEEEEEeccCC
Confidence 58999999999999999999997 68888876433333322110 00000 0011222333222 14555544443210
Q ss_pred HHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCC
Q psy9637 82 VDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSG 131 (490)
Q Consensus 82 v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsG 131 (490)
-.+... ...++.=++||++.-.. ..-....+.+...++.|+++++.|
T Consensus 80 ~~~~~~--~~f~~~~DvVi~a~Dn~-~aR~~ln~~c~~~~iplI~~g~~G 126 (234)
T cd01484 80 PEQDFN--DTFFEQFHIIVNALDNI-IARRYVNGMLIFLIVPLIESGTEG 126 (234)
T ss_pred hhhhch--HHHHhCCCEEEECCCCH-HHHHHHHHHHHHcCCCEEEEcccC
Confidence 001110 12344568999986643 332333377777889999887654
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou |
| >PRK12939 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.43 E-value=0.42 Score=45.84 Aligned_cols=40 Identities=15% Similarity=0.160 Sum_probs=34.8
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHH
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFL 44 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~ 44 (490)
++|-|+|. |.+|..+++.|++.|++|++.+|++++.+.+.
T Consensus 8 ~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~ 48 (250)
T PRK12939 8 KRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELA 48 (250)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 56888885 99999999999999999999999988766554
|
|
| >PRK07326 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.42 E-value=0.55 Score=44.78 Aligned_cols=40 Identities=13% Similarity=0.131 Sum_probs=34.7
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHH
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFL 44 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~ 44 (490)
++|-|+|. |.+|..+++.|+++|++|++.+|++++.+.+.
T Consensus 7 ~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~ 47 (237)
T PRK07326 7 KVALITGGSKGIGFAIAEALLAEGYKVAITARDQKELEEAA 47 (237)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHH
Confidence 46888874 99999999999999999999999987766554
|
|
| >PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed | Back alignment and domain information |
|---|
Probab=93.40 E-value=0.16 Score=52.84 Aligned_cols=36 Identities=25% Similarity=0.443 Sum_probs=32.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHH
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAK 39 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~ 39 (490)
|++|||||.|..|..|+....+.|++|+++|.+++.
T Consensus 2 ~~~igilG~Gql~~ml~~aa~~lG~~v~~~d~~~~~ 37 (372)
T PRK06019 2 MKTIGIIGGGQLGRMLALAAAPLGYKVIVLDPDPDS 37 (372)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCC
Confidence 358999999999999999999999999999988654
|
|
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=93.39 E-value=0.23 Score=49.37 Aligned_cols=99 Identities=12% Similarity=0.161 Sum_probs=52.3
Q ss_pred CcEEEEcccHHHHHHHHHHHHC--CCeEEEEeCChHHHHHHHHc----ccCCCCee-ccCCHHHHHhhCCCCcEEEEecC
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDH--GFTVVAYNRTTAKVDSFLAN----EAKGTNII-GAHSLEELVKNLKKPRRVMMLVK 77 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~--G~~V~v~dr~~~~~~~l~~~----g~~~~~i~-~~~s~~e~v~~l~~~dvIil~vp 77 (490)
.||.|||.|.+-...-.-.... |..|..+|++++..+...+. ..-..++. .+.+..++..++...|+|+++--
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAal 201 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAAL 201 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-TT
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhhh
Confidence 4899999998865433222233 46788999999987654321 11122332 23444445445666899999876
Q ss_pred CC---chHHHHHHhhcccCCCCCEEEcCC
Q psy9637 78 AG---SAVDDFIDKLVPLLEKGDIIIDGG 103 (490)
Q Consensus 78 ~~---~~v~~vl~~l~~~l~~g~iiId~s 103 (490)
.+ ..-.++++.+...+++|..|+--+
T Consensus 202 Vg~~~e~K~~Il~~l~~~m~~ga~l~~Rs 230 (276)
T PF03059_consen 202 VGMDAEPKEEILEHLAKHMAPGARLVVRS 230 (276)
T ss_dssp -S----SHHHHHHHHHHHS-TTSEEEEEE
T ss_pred cccccchHHHHHHHHHhhCCCCcEEEEec
Confidence 64 245678899999999999887653
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >TIGR03466 HpnA hopanoid-associated sugar epimerase | Back alignment and domain information |
|---|
Probab=93.35 E-value=0.13 Score=51.56 Aligned_cols=71 Identities=13% Similarity=0.141 Sum_probs=46.3
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCee-ccCCHHHHHhhCCCCcEEEEecC
Q psy9637 5 GDIGLIG-LAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNII-GAHSLEELVKNLKKPRRVMMLVK 77 (490)
Q Consensus 5 ~~IgiIG-lG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~-~~~s~~e~v~~l~~~dvIil~vp 77 (490)
|+|.|.| .|.+|..++..|+++|++|++.+|+++....+...+.. -+. -..+.+++.+.++.+|+||-+..
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~--~~~~D~~~~~~l~~~~~~~d~vi~~a~ 73 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRRNLEGLDVE--IVEGDLRDPASLRKAVAGCRALFHVAA 73 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCCCEEEEEEecCccccccccCCce--EEEeeCCCHHHHHHHHhCCCEEEEece
Confidence 4789998 59999999999999999999999987654333211111 000 12334444444445788777653
|
The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. |
| >PRK06728 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.34 E-value=0.2 Score=51.51 Aligned_cols=96 Identities=15% Similarity=0.267 Sum_probs=58.5
Q ss_pred CC-CCCcEEEEcc-cHHHHHHHHHHHH-CCCe---EEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEE
Q psy9637 1 MA-AKGDIGLIGL-AVMGQNLILNMND-HGFT---VVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMM 74 (490)
Q Consensus 1 M~-~~~~IgiIGl-G~MG~~lA~~L~~-~G~~---V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil 74 (490)
|+ ..++|||||. |..|..|.+.|.+ ..++ +..+......-+.+ ........+.. .++.++ .. .|++|+
T Consensus 1 ~~~~~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~-~~~~~~l~v~~-~~~~~~-~~---~Divf~ 74 (347)
T PRK06728 1 MSEKGYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTV-QFKGREIIIQE-AKINSF-EG---VDIAFF 74 (347)
T ss_pred CCCCCCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCe-eeCCcceEEEe-CCHHHh-cC---CCEEEE
Confidence 55 3469999996 9999999999995 5667 44443321111111 11111111111 244444 33 899999
Q ss_pred ecCCCchHHHHHHhhcccCCCCCEEEcCCCCC
Q psy9637 75 LVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 75 ~vp~~~~v~~vl~~l~~~l~~g~iiId~s~~~ 106 (490)
++|.+ ...++...+. ..|..|||.|..+
T Consensus 75 a~~~~-~s~~~~~~~~---~~G~~VID~Ss~f 102 (347)
T PRK06728 75 SAGGE-VSRQFVNQAV---SSGAIVIDNTSEY 102 (347)
T ss_pred CCChH-HHHHHHHHHH---HCCCEEEECchhh
Confidence 99986 5555555443 4689999998754
|
|
| >COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.31 E-value=1.2 Score=45.36 Aligned_cols=154 Identities=18% Similarity=0.214 Sum_probs=82.0
Q ss_pred CcEEEEcccHHHHHHHHHHHH-CCCeEEE-EeCChHHHHHHHHccc-CCCCeeccCCHHHHHhhCCCCcEEEEecCCCch
Q psy9637 5 GDIGLIGLAVMGQNLILNMND-HGFTVVA-YNRTTAKVDSFLANEA-KGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSA 81 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~-~G~~V~v-~dr~~~~~~~l~~~g~-~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~ 81 (490)
-|||+||.|.||+.|...... .|.+|.. -||+.+.+++..+... ....+.-.++...+...++.-.+.+ .++
T Consensus 18 iRVGlIGAG~mG~~ivtQi~~m~Gm~vvaisd~~~~~ak~A~~~ag~~~~~~~e~~~~s~~a~Ai~aGKi~v---T~D-- 92 (438)
T COG4091 18 IRVGLIGAGEMGTGIVTQIASMPGMEVVAISDRNLDAAKRAYDRAGGPKIEAVEADDASKMADAIEAGKIAV---TDD-- 92 (438)
T ss_pred eEEEEecccccchHHHHHHhhcCCceEEEEecccchHHHHHHHHhcCCcccccccchhhHHHHHHhcCcEEE---ecc--
Confidence 489999999999999988775 6888774 5899888777655322 1111222323333333333244433 232
Q ss_pred HHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHH--HHHcccccc--ccCCCCCcccc----ccCC--ccCCCCCcchH
Q psy9637 82 VDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKA--LEAKGLLYV--GCGVSGGEDGA----RYGP--SLMPGGNPAAW 151 (490)
Q Consensus 82 v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~--l~~~gi~~l--d~~vsGg~~~a----~~G~--~im~GG~~~a~ 151 (490)
.+.++. ..-=++|||.+. .|..-.+..-. ...|.+..+ .+-+.=||--. +.|- +.-.|-.+.+.
T Consensus 93 ~~~i~~-----~~~IdvIIdATG-~p~vGA~~~l~Ai~h~KHlVMmNVEaDvtIGp~Lk~~Ad~~GviyS~~~GDeP~~~ 166 (438)
T COG4091 93 AELIIA-----NDLIDVIIDATG-VPEVGAKIALEAILHGKHLVMMNVEADVTIGPILKQQADAAGVIYSGGAGDEPSSC 166 (438)
T ss_pred hhhhhc-----CCcceEEEEcCC-CcchhhHhHHHHHhcCCeEEEEEeeeceeecHHHHHHHhhcCeEEeccCCCCcHHH
Confidence 222221 122367888754 45555554422 223333332 23344344321 2233 33333344555
Q ss_pred HHHHHHHHhhCCceeeCC
Q psy9637 152 PALKPIFQKLNPSFETSA 169 (490)
Q Consensus 152 ~~v~~ll~~l~~~~~~~g 169 (490)
-.+-++-+++|-.++..|
T Consensus 167 mEL~efa~a~G~evv~aG 184 (438)
T COG4091 167 MELYEFASALGFEVVSAG 184 (438)
T ss_pred HHHHHHHHhcCCeEEecc
Confidence 566677888888777655
|
|
| >cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1 | Back alignment and domain information |
|---|
Probab=93.29 E-value=0.22 Score=49.83 Aligned_cols=117 Identities=14% Similarity=0.192 Sum_probs=69.2
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHccc-CCCCe--eccCCHHHHHhhCCCCcEEEEecCCCc
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGF-TVVAYNRTTAKVDSFLANEA-KGTNI--IGAHSLEELVKNLKKPRRVMMLVKAGS 80 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~g~-~~~~i--~~~~s~~e~v~~l~~~dvIil~vp~~~ 80 (490)
.+|.|+|+|-+|..+|+||+..|. +++++|.+.-....+..... ....+ .-+....+.+.++ .|++-+......
T Consensus 20 s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~eL-Np~V~V~~~~~~- 97 (286)
T cd01491 20 SNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAEL-NPYVPVTVSTGP- 97 (286)
T ss_pred CcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCccchhhcccCccCChHHhCHHHHHHHHHHHHHH-CCCCEEEEEecc-
Confidence 589999999999999999999997 69999977544333322100 00000 0011122222333 255655555432
Q ss_pred hHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCC
Q psy9637 81 AVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSG 131 (490)
Q Consensus 81 ~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsG 131 (490)
...+. +.+=++||++.. .+....++.+.+.+.++.|+.+.+.|
T Consensus 98 ~~~~~-------l~~fdvVV~~~~-~~~~~~~in~~c~~~~ipfI~a~~~G 140 (286)
T cd01491 98 LTTDE-------LLKFQVVVLTDA-SLEDQLKINEFCHSPGIKFISADTRG 140 (286)
T ss_pred CCHHH-------HhcCCEEEEecC-CHHHHHHHHHHHHHcCCEEEEEeccc
Confidence 22222 234468888754 44555555588888899888886644
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1. |
| >PRK00711 D-amino acid dehydrogenase small subunit; Validated | Back alignment and domain information |
|---|
Probab=93.28 E-value=0.1 Score=54.65 Aligned_cols=34 Identities=18% Similarity=0.309 Sum_probs=31.6
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTA 38 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~ 38 (490)
|+|.|||.|.+|...|..|+++|++|+++|++..
T Consensus 1 ~~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~~ 34 (416)
T PRK00711 1 MRVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQPG 34 (416)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCCc
Confidence 4799999999999999999999999999999753
|
|
| >PLN02896 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=93.26 E-value=0.41 Score=49.14 Aligned_cols=41 Identities=29% Similarity=0.353 Sum_probs=35.3
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHH
Q psy9637 4 KGDIGLIG-LAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFL 44 (490)
Q Consensus 4 ~~~IgiIG-lG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~ 44 (490)
.|+|-|.| .|.+|..+++.|+++|++|++.+|++++.+.+.
T Consensus 10 ~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~ 51 (353)
T PLN02896 10 TGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLL 51 (353)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHH
Confidence 47899998 699999999999999999999999877655543
|
|
| >cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase | Back alignment and domain information |
|---|
Probab=93.24 E-value=0.6 Score=49.43 Aligned_cols=72 Identities=13% Similarity=0.086 Sum_probs=49.7
Q ss_pred CcEEEEcccHHHH-HHHHHHHHC-----CCeEEEEeCC-hHHHHHHH-------HcccCCCCeeccCCHHHHHhhCCCCc
Q psy9637 5 GDIGLIGLAVMGQ-NLILNMNDH-----GFTVVAYNRT-TAKVDSFL-------ANEAKGTNIIGAHSLEELVKNLKKPR 70 (490)
Q Consensus 5 ~~IgiIGlG~MG~-~lA~~L~~~-----G~~V~v~dr~-~~~~~~l~-------~~g~~~~~i~~~~s~~e~v~~l~~~d 70 (490)
|||+|||.|..-. .+...|+.. +-+|+.+|++ +++++... +......++..+++.++++.. +|
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~~rl~~v~~~~~~~~~~~~~~~~v~~t~d~~~al~g---ad 77 (419)
T cd05296 1 MKLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGALAKRMVKKAGLPIKVHLTTDRREALEG---AD 77 (419)
T ss_pred CEEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCChHHHHHHHHHHHHHHHHhhCCCeEEEEeCCHHHHhCC---CC
Confidence 5899999998743 344555542 3589999999 78765422 121113457778899998877 99
Q ss_pred EEEEecCCC
Q psy9637 71 RVMMLVKAG 79 (490)
Q Consensus 71 vIil~vp~~ 79 (490)
+||++.-.+
T Consensus 78 fVi~~~~vg 86 (419)
T cd05296 78 FVFTQIRVG 86 (419)
T ss_pred EEEEEEeeC
Confidence 999988443
|
Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein |
| >PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=93.23 E-value=1 Score=47.76 Aligned_cols=33 Identities=18% Similarity=0.240 Sum_probs=30.2
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCCh
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTT 37 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~ 37 (490)
++|.|+|+|..|.+.++.|++.|++|+++|..+
T Consensus 7 ~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~ 39 (438)
T PRK03806 7 KKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRI 39 (438)
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 579999999999999999999999999999754
|
|
| >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=93.21 E-value=0.85 Score=43.49 Aligned_cols=40 Identities=18% Similarity=0.280 Sum_probs=34.9
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHH
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFL 44 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~ 44 (490)
++|-|.|. |.+|..+++.|++.|++|++.+|++++.+.+.
T Consensus 6 ~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~ 46 (238)
T PRK05786 6 KKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNENKLKRMK 46 (238)
T ss_pred cEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 47888885 88999999999999999999999988776653
|
|
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.20 E-value=0.56 Score=47.89 Aligned_cols=44 Identities=11% Similarity=0.135 Sum_probs=37.1
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHccc
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGF-TVVAYNRTTAKVDSFLANEA 48 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~g~ 48 (490)
.+|.|+|.|.+|...+..+...|. .|++.++++++.+.+.+.|+
T Consensus 171 ~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa 215 (343)
T PRK09880 171 KRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGA 215 (343)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCC
Confidence 469999999999988888888898 68899999999887776654
|
|
| >COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.17 E-value=0.38 Score=50.08 Aligned_cols=107 Identities=21% Similarity=0.294 Sum_probs=64.9
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChH------------------HHHHHHHcccCCCCeeccCCHHHHHhhC
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTA------------------KVDSFLANEAKGTNIIGAHSLEELVKNL 66 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~------------------~~~~l~~~g~~~~~i~~~~s~~e~v~~l 66 (490)
.+|+|=|.|++|...|+.|.+.|.+|++.+-+.. +...+.+... .+.... +++...
T Consensus 208 ~rVaVQG~GNVg~~aa~~l~~~GAkvva~sds~g~i~~~~Gld~~~l~~~~~~~~~v~~~~g----a~~i~~-~e~~~~- 281 (411)
T COG0334 208 ARVAVQGFGNVGQYAAEKLHELGAKVVAVSDSKGGIYDEDGLDVEALLELKERRGSVAEYAG----AEYITN-EELLEV- 281 (411)
T ss_pred CEEEEECccHHHHHHHHHHHHcCCEEEEEEcCCCceecCCCCCHHHHHHHhhhhhhHHhhcC----ceEccc-cccccc-
Confidence 5899999999999999999999999998765544 2222222110 111222 344332
Q ss_pred CCCcEEEEecCCCchHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccccc
Q psy9637 67 KKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYV 125 (490)
Q Consensus 67 ~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~l 125 (490)
+||+.+=|--......+-+..| .. ++|+...|.. .+.+..+.+.++||-|+
T Consensus 282 -~cDIl~PcA~~n~I~~~na~~l----~a-k~V~EgAN~P--~t~eA~~i~~erGIl~~ 332 (411)
T COG0334 282 -DCDILIPCALENVITEDNADQL----KA-KIVVEGANGP--TTPEADEILLERGILVV 332 (411)
T ss_pred -cCcEEcccccccccchhhHHHh----hh-cEEEeccCCC--CCHHHHHHHHHCCCEEc
Confidence 3787764443333333333333 22 3888888853 34555667778998775
|
|
| >PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.11 E-value=0.27 Score=49.13 Aligned_cols=73 Identities=16% Similarity=0.291 Sum_probs=55.2
Q ss_pred CcEEEEcc-cHHHHHHHHHHHH----CCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCC
Q psy9637 5 GDIGLIGL-AVMGQNLILNMND----HGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAG 79 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~----~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~ 79 (490)
+++.|||- ..+|.+++..|.+ .|..|++++.+ +.++.+.+.. +|+||.++..+
T Consensus 158 k~vvViGrS~iVG~Pla~lL~~~~~~~~AtVt~~hs~-------------------t~~l~~~~~~---ADIVI~AvG~p 215 (286)
T PRK14184 158 KKAVVVGRSNIVGKPLALMLGAPGKFANATVTVCHSR-------------------TPDLAEECRE---ADFLFVAIGRP 215 (286)
T ss_pred CEEEEECCCccchHHHHHHHhCCcccCCCEEEEEeCC-------------------chhHHHHHHh---CCEEEEecCCC
Confidence 57999995 6789999999998 77889888754 2355666666 99999999775
Q ss_pred chHHHHHHhhcccCCCCCEEEcCCCC
Q psy9637 80 SAVDDFIDKLVPLLEKGDIIIDGGNS 105 (490)
Q Consensus 80 ~~v~~vl~~l~~~l~~g~iiId~s~~ 105 (490)
.-+. . ..+++|.+|||.+..
T Consensus 216 ~li~---~---~~vk~GavVIDVGi~ 235 (286)
T PRK14184 216 RFVT---A---DMVKPGAVVVDVGIN 235 (286)
T ss_pred CcCC---H---HHcCCCCEEEEeeee
Confidence 4322 2 235799999999864
|
|
| >PRK08265 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.09 E-value=0.66 Score=45.30 Aligned_cols=40 Identities=10% Similarity=0.053 Sum_probs=34.0
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHH
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFL 44 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~ 44 (490)
+++-|.|. |.+|..+++.|+++|++|++.+|++++.+++.
T Consensus 7 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~ 47 (261)
T PRK08265 7 KVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGAAVA 47 (261)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 46777775 99999999999999999999999987766554
|
|
| >PRK05868 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=93.08 E-value=0.1 Score=54.17 Aligned_cols=35 Identities=20% Similarity=0.352 Sum_probs=32.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChH
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTA 38 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~ 38 (490)
|++|.|||.|..|..+|..|+++|++|+++++.++
T Consensus 1 ~~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~ 35 (372)
T PRK05868 1 MKTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPG 35 (372)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Confidence 36899999999999999999999999999998865
|
|
| >PRK06753 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.07 E-value=0.11 Score=53.66 Aligned_cols=34 Identities=18% Similarity=0.383 Sum_probs=32.1
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTA 38 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~ 38 (490)
|+|.|||.|..|..+|..|+++|++|+++++++.
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~ 34 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNES 34 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 4899999999999999999999999999998875
|
|
| >PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed | Back alignment and domain information |
|---|
Probab=93.05 E-value=0.59 Score=44.81 Aligned_cols=40 Identities=10% Similarity=0.137 Sum_probs=34.4
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHH
Q psy9637 5 GDIGLIG-LAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFL 44 (490)
Q Consensus 5 ~~IgiIG-lG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~ 44 (490)
++|.|.| .|.+|..+++.|+++|++|++.+|++++...+.
T Consensus 7 ~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~ 47 (251)
T PRK12826 7 RVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAATA 47 (251)
T ss_pred CEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 5788888 699999999999999999999999977655443
|
|
| >PRK08219 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.04 E-value=0.33 Score=45.88 Aligned_cols=40 Identities=13% Similarity=0.228 Sum_probs=33.9
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHH
Q psy9637 4 KGDIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFL 44 (490)
Q Consensus 4 ~~~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~ 44 (490)
+++|-|.|. |.+|..+++.|+++ ++|++.+|+++..+.+.
T Consensus 3 ~~~vlVtG~~g~iG~~l~~~l~~~-~~V~~~~r~~~~~~~~~ 43 (227)
T PRK08219 3 RPTALITGASRGIGAAIARELAPT-HTLLLGGRPAERLDELA 43 (227)
T ss_pred CCEEEEecCCcHHHHHHHHHHHhh-CCEEEEeCCHHHHHHHH
Confidence 457888874 99999999999999 99999999987766554
|
|
| >PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=93.04 E-value=0.38 Score=44.90 Aligned_cols=71 Identities=14% Similarity=0.225 Sum_probs=46.5
Q ss_pred cEEEEcccHHHHHHHH--HHHH----CCCeEEEEeCChHHHHHHHH-------cccCCCCeeccCCHHHHHhhCCCCcEE
Q psy9637 6 DIGLIGLAVMGQNLIL--NMND----HGFTVVAYNRTTAKVDSFLA-------NEAKGTNIIGAHSLEELVKNLKKPRRV 72 (490)
Q Consensus 6 ~IgiIGlG~MG~~lA~--~L~~----~G~~V~v~dr~~~~~~~l~~-------~g~~~~~i~~~~s~~e~v~~l~~~dvI 72 (490)
||+|||.|..-.+.-. .+.. .+-+++.+|+++++++.... +.....++..++|.+++++. +|+|
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~~~~~~~~~~~~~~v~~ttd~~eAl~g---ADfV 77 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERLARRMVEEAGADLKVEATTDRREALEG---ADFV 77 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHHHHHHHHHCTTSSEEEEESSHHHHHTT---ESEE
T ss_pred CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhCC---CCEE
Confidence 7999999987766322 2332 13479999999998874322 22223466778999998887 9999
Q ss_pred EEecCCC
Q psy9637 73 MMLVKAG 79 (490)
Q Consensus 73 il~vp~~ 79 (490)
|.++-.+
T Consensus 78 i~~irvG 84 (183)
T PF02056_consen 78 INQIRVG 84 (183)
T ss_dssp EE---TT
T ss_pred EEEeeec
Confidence 9988655
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A. |
| >TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase | Back alignment and domain information |
|---|
Probab=93.02 E-value=0.61 Score=45.46 Aligned_cols=41 Identities=15% Similarity=0.238 Sum_probs=34.2
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLA 45 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~ 45 (490)
+++-|.|. |.+|..+++.|+++|++|++.+|+.++.+.+.+
T Consensus 6 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~l~~ 47 (262)
T TIGR03325 6 EVVLVTGGASGLGRAIVDRFVAEGARVAVLDKSAAGLQELEA 47 (262)
T ss_pred cEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh
Confidence 45667774 789999999999999999999999887766543
|
Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase. |
| >PRK09186 flagellin modification protein A; Provisional | Back alignment and domain information |
|---|
Probab=92.92 E-value=0.63 Score=44.96 Aligned_cols=90 Identities=19% Similarity=0.245 Sum_probs=54.8
Q ss_pred CCCCCcEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCC
Q psy9637 1 MAAKGDIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAG 79 (490)
Q Consensus 1 M~~~~~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~ 79 (490)
|...++|-|.|. |.+|..+|..|+++|++|++.+|++++.+.+.+.-. ..... +...++..=+.+.
T Consensus 1 ~~~~k~vlItGas~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~------------~~~~~-~~~~~~~~Dl~d~ 67 (256)
T PRK09186 1 MLKGKTILITGAGGLIGSALVKAILEAGGIVIAADIDKEALNELLESLG------------KEFKS-KKLSLVELDITDQ 67 (256)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecChHHHHHHHHHHH------------hhcCC-CceeEEEecCCCH
Confidence 333457888875 899999999999999999999999887766543210 00000 0011222333444
Q ss_pred chHHHHHHhhcccCCCCCEEEcCC
Q psy9637 80 SAVDDFIDKLVPLLEKGDIIIDGG 103 (490)
Q Consensus 80 ~~v~~vl~~l~~~l~~g~iiId~s 103 (490)
..+.++++.+.....+=|+||.+.
T Consensus 68 ~~~~~~~~~~~~~~~~id~vi~~A 91 (256)
T PRK09186 68 ESLEEFLSKSAEKYGKIDGAVNCA 91 (256)
T ss_pred HHHHHHHHHHHHHcCCccEEEECC
Confidence 456666666554444446777664
|
|
| >PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=92.89 E-value=0.33 Score=48.74 Aligned_cols=73 Identities=14% Similarity=0.262 Sum_probs=54.1
Q ss_pred CcEEEEcc-cHHHHHHHHHHHH----CCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCC
Q psy9637 5 GDIGLIGL-AVMGQNLILNMND----HGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAG 79 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~----~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~ 79 (490)
+++.|||- ..+|.++|..|.+ .|..|++++.+. .++.+.+.. +|+||.+++..
T Consensus 160 k~vvViGrS~iVG~Pla~lL~~~~~~~~atVt~~hs~t-------------------~~l~~~~~~---ADIvI~Avg~~ 217 (295)
T PRK14174 160 KHCVVVGRSNIVGKPMANLMLQKLKESNCTVTICHSAT-------------------KDIPSYTRQ---ADILIAAIGKA 217 (295)
T ss_pred CEEEEECCCCcchHHHHHHHHhccccCCCEEEEEeCCc-------------------hhHHHHHHh---CCEEEEecCcc
Confidence 57999995 6789999999987 688998887542 345566666 99999999664
Q ss_pred chHHHHHHhhcccCCCCCEEEcCCCC
Q psy9637 80 SAVDDFIDKLVPLLEKGDIIIDGGNS 105 (490)
Q Consensus 80 ~~v~~vl~~l~~~l~~g~iiId~s~~ 105 (490)
.- +-.+ .+++|.+|||.|..
T Consensus 218 ~l---i~~~---~vk~GavVIDVgi~ 237 (295)
T PRK14174 218 RF---ITAD---MVKPGAVVIDVGIN 237 (295)
T ss_pred Cc---cCHH---HcCCCCEEEEeecc
Confidence 21 1122 35799999999854
|
|
| >PRK13394 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.88 E-value=0.45 Score=46.11 Aligned_cols=41 Identities=12% Similarity=0.209 Sum_probs=35.0
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLA 45 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~ 45 (490)
+++-|.|. |.+|..++..|+++|++|++.+|++++.+++.+
T Consensus 8 ~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~ 49 (262)
T PRK13394 8 KTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVAD 49 (262)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Confidence 45778876 999999999999999999999999877666543
|
|
| >TIGR01777 yfcH conserved hypothetical protein TIGR01777 | Back alignment and domain information |
|---|
Probab=92.85 E-value=0.21 Score=49.19 Aligned_cols=65 Identities=14% Similarity=0.105 Sum_probs=42.0
Q ss_pred EEEc-ccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCC
Q psy9637 8 GLIG-LAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKA 78 (490)
Q Consensus 8 giIG-lG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~ 78 (490)
-|.| .|.+|..+++.|++.|++|++.+|+++..+.+..... ..... ......+..+|+||-|...
T Consensus 2 lVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-----~~~~~-~~~~~~~~~~D~Vvh~a~~ 67 (292)
T TIGR01777 2 LITGGTGFIGRALTQRLTKDGHEVTILTRSPPAGANTKWEGY-----KPWAP-LAESEALEGADAVINLAGE 67 (292)
T ss_pred EEEcccchhhHHHHHHHHHcCCEEEEEeCCCCCCCcccceee-----ecccc-cchhhhcCCCCEEEECCCC
Confidence 4666 6999999999999999999999998776433221111 01111 1222334458888877743
|
This model represents a clade of proteins of unknown function including the E. coli yfcH protein. |
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=92.83 E-value=0.82 Score=45.28 Aligned_cols=93 Identities=18% Similarity=0.211 Sum_probs=56.3
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCe-EEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhC---CCCcEEEEecCCCc
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFT-VVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNL---KKPRRVMMLVKAGS 80 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~-V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l---~~~dvIil~vp~~~ 80 (490)
.+|.|+|.|.+|...+..+...|.. |++.++++++.+.+.+.|.. .+....+..+.+..+ ...|++|-++....
T Consensus 122 ~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~--~~i~~~~~~~~~~~~~~~~g~d~vid~~G~~~ 199 (280)
T TIGR03366 122 RRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGAT--ALAEPEVLAERQGGLQNGRGVDVALEFSGATA 199 (280)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCc--EecCchhhHHHHHHHhCCCCCCEEEECCCChH
Confidence 4689999999999988888888986 88889999888777665542 111111122222211 13677777765433
Q ss_pred hHHHHHHhhcccCCCCCEEEcCC
Q psy9637 81 AVDDFIDKLVPLLEKGDIIIDGG 103 (490)
Q Consensus 81 ~v~~vl~~l~~~l~~g~iiId~s 103 (490)
.++.. ...+.++-.++..+
T Consensus 200 ~~~~~----~~~l~~~G~iv~~G 218 (280)
T TIGR03366 200 AVRAC----LESLDVGGTAVLAG 218 (280)
T ss_pred HHHHH----HHHhcCCCEEEEec
Confidence 33333 33344555555544
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways | Back alignment and domain information |
|---|
Probab=92.82 E-value=0.12 Score=52.13 Aligned_cols=34 Identities=21% Similarity=0.355 Sum_probs=29.6
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTA 38 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~ 38 (490)
.+|.|||.|.-|..+|..|+++|++|.++++++.
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~ 35 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGIDVTIIERRPD 35 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred ceEEEECCCHHHHHHHHHHHhcccccccchhccc
Confidence 3799999999999999999999999999998765
|
In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C .... |
| >PRK05693 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.79 E-value=0.85 Score=44.78 Aligned_cols=40 Identities=20% Similarity=0.304 Sum_probs=33.6
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHH
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFL 44 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~ 44 (490)
+++-|.|. |.+|..+++.|++.|++|++.+|++++.+.+.
T Consensus 2 k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~ 42 (274)
T PRK05693 2 PVVLITGCSSGIGRALADAFKAAGYEVWATARKAEDVEALA 42 (274)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 45777774 89999999999999999999999987765543
|
|
| >PRK08267 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.78 E-value=0.78 Score=44.56 Aligned_cols=41 Identities=24% Similarity=0.341 Sum_probs=35.6
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q psy9637 5 GDIGLIG-LAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLA 45 (490)
Q Consensus 5 ~~IgiIG-lG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~ 45 (490)
+++-|+| .|.+|..+++.|+++|++|.+.+|+++..+.+..
T Consensus 2 k~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~ 43 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAEGWRVGAYDINEAGLAALAA 43 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH
Confidence 4688887 5999999999999999999999999888777654
|
|
| >PRK07024 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.78 E-value=0.64 Score=45.18 Aligned_cols=41 Identities=24% Similarity=0.272 Sum_probs=35.1
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q psy9637 5 GDIGLIG-LAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLA 45 (490)
Q Consensus 5 ~~IgiIG-lG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~ 45 (490)
++|-|.| .|.+|..++..|+++|++|++.+|++++.+.+.+
T Consensus 3 ~~vlItGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~ 44 (257)
T PRK07024 3 LKVFITGASSGIGQALAREYARQGATLGLVARRTDALQAFAA 44 (257)
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 4677777 6999999999999999999999999887766543
|
|
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=92.77 E-value=0.63 Score=48.01 Aligned_cols=95 Identities=14% Similarity=0.185 Sum_probs=56.0
Q ss_pred cEEEEcccHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHcccCCCCee-ccC-CHHHHHhhC---CCCcEEEEecCCC
Q psy9637 6 DIGLIGLAVMGQNLILNMNDHGF-TVVAYNRTTAKVDSFLANEAKGTNII-GAH-SLEELVKNL---KKPRRVMMLVKAG 79 (490)
Q Consensus 6 ~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~g~~~~~i~-~~~-s~~e~v~~l---~~~dvIil~vp~~ 79 (490)
++.|+|+|.+|...+..+...|. +|++.|+++++++...+.++.. .+. ... +..+.+..+ ..+|++|-|+...
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~-~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G~~ 249 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGAD-VVVNPSEDDAGAEILELTGGRGADVVIEAVGSP 249 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCe-EeecCccccHHHHHHHHhCCCCCCEEEECCCCH
Confidence 69999999999988777777784 6778899999998877643321 010 001 111111111 1367777777643
Q ss_pred chHHHHHHhhcccCCCCCEEEcCCCC
Q psy9637 80 SAVDDFIDKLVPLLEKGDIIIDGGNS 105 (490)
Q Consensus 80 ~~v~~vl~~l~~~l~~g~iiId~s~~ 105 (490)
. .+++.+..++++-.|+-.|..
T Consensus 250 ~----~~~~ai~~~r~gG~v~~vGv~ 271 (350)
T COG1063 250 P----ALDQALEALRPGGTVVVVGVY 271 (350)
T ss_pred H----HHHHHHHHhcCCCEEEEEecc
Confidence 2 233344445555555555543
|
|
| >PRK06179 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.76 E-value=0.47 Score=46.38 Aligned_cols=81 Identities=14% Similarity=0.251 Sum_probs=52.0
Q ss_pred CCCCCcEEEEc-ccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCC
Q psy9637 1 MAAKGDIGLIG-LAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAG 79 (490)
Q Consensus 1 M~~~~~IgiIG-lG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~ 79 (490)
|+..++|-|.| .|.+|..+++.|++.|++|++.+|++++.+.. .. ..++-.=+.+.
T Consensus 1 m~~~~~vlVtGasg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~--------------------~~---~~~~~~D~~d~ 57 (270)
T PRK06179 1 MSNSKVALVTGASSGIGRATAEKLARAGYRVFGTSRNPARAAPI--------------------PG---VELLELDVTDD 57 (270)
T ss_pred CCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCChhhcccc--------------------CC---CeeEEeecCCH
Confidence 55445677887 59999999999999999999999987543210 01 12233233344
Q ss_pred chHHHHHHhhcccCCCCCEEEcCCC
Q psy9637 80 SAVDDFIDKLVPLLEKGDIIIDGGN 104 (490)
Q Consensus 80 ~~v~~vl~~l~~~l~~g~iiId~s~ 104 (490)
..++.+++.+.....+-+++|.+..
T Consensus 58 ~~~~~~~~~~~~~~g~~d~li~~ag 82 (270)
T PRK06179 58 ASVQAAVDEVIARAGRIDVLVNNAG 82 (270)
T ss_pred HHHHHHHHHHHHhCCCCCEEEECCC
Confidence 4556666665554445566766654
|
|
| >PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=92.74 E-value=0.21 Score=39.64 Aligned_cols=33 Identities=21% Similarity=0.313 Sum_probs=30.7
Q ss_pred cEEEEcccHHHHHHHHHHHHCCCeEEEEeCChH
Q psy9637 6 DIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTA 38 (490)
Q Consensus 6 ~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~ 38 (490)
||.|||.|..|.-+|..|.+.|.+|+++++++.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~ 33 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDR 33 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccch
Confidence 589999999999999999999999999998754
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A .... |
| >PRK06057 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.71 E-value=0.82 Score=44.32 Aligned_cols=40 Identities=15% Similarity=0.036 Sum_probs=34.7
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHH
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFL 44 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~ 44 (490)
++|-|+|. |.+|..+++.|+++|++|++.+|++.+.+...
T Consensus 8 ~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~ 48 (255)
T PRK06057 8 RVAVITGGGSGIGLATARRLAAEGATVVVGDIDPEAGKAAA 48 (255)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 47889987 99999999999999999999999987665544
|
|
| >PRK06953 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.69 E-value=0.35 Score=45.96 Aligned_cols=41 Identities=20% Similarity=0.398 Sum_probs=34.9
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q psy9637 5 GDIGLIG-LAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLA 45 (490)
Q Consensus 5 ~~IgiIG-lG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~ 45 (490)
+++-|+| .|.+|..+++.|++.|++|++.+|+++..+++..
T Consensus 2 ~~vlvtG~sg~iG~~la~~L~~~G~~v~~~~r~~~~~~~~~~ 43 (222)
T PRK06953 2 KTVLIVGASRGIGREFVRQYRADGWRVIATARDAAALAALQA 43 (222)
T ss_pred ceEEEEcCCCchhHHHHHHHHhCCCEEEEEECCHHHHHHHHh
Confidence 3677777 6999999999999999999999999887766543
|
|
| >PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=92.66 E-value=0.36 Score=54.16 Aligned_cols=33 Identities=21% Similarity=0.378 Sum_probs=31.1
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCCh
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTT 37 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~ 37 (490)
++|.|||.|..|...|..|++.||+|++|++.+
T Consensus 328 ~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~ 360 (654)
T PRK12769 328 KRVAIIGAGPAGLACADVLARNGVAVTVYDRHP 360 (654)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence 589999999999999999999999999999864
|
|
| >PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=92.66 E-value=0.28 Score=50.87 Aligned_cols=93 Identities=17% Similarity=0.285 Sum_probs=54.8
Q ss_pred CcEEEEcc-cHHHHHHHHHHH-HCCCe---EEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCC
Q psy9637 5 GDIGLIGL-AVMGQNLILNMN-DHGFT---VVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAG 79 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~-~~G~~---V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~ 79 (490)
++|||||. |..|.-|.+.++ ...++ +..+..+ ...............+....++.++ .. .|++|+++|.+
T Consensus 2 ~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss~-~sg~~~~~f~g~~~~v~~~~~~~~~-~~---~Divf~a~~~~ 76 (369)
T PRK06598 2 KKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTS-QAGGAAPSFGGKEGTLQDAFDIDAL-KK---LDIIITCQGGD 76 (369)
T ss_pred eEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecch-hhCCcccccCCCcceEEecCChhHh-cC---CCEEEECCCHH
Confidence 68999996 999999998554 45566 6665443 1111111111111112112234444 33 89999999985
Q ss_pred chHHHHHHhhcccCCCC--CEEEcCCCCC
Q psy9637 80 SAVDDFIDKLVPLLEKG--DIIIDGGNSE 106 (490)
Q Consensus 80 ~~v~~vl~~l~~~l~~g--~iiId~s~~~ 106 (490)
...++...+. ..| .+|||.|+.+
T Consensus 77 -~s~~~~~~~~---~aG~~~~VID~Ss~f 101 (369)
T PRK06598 77 -YTNEVYPKLR---AAGWQGYWIDAASTL 101 (369)
T ss_pred -HHHHHHHHHH---hCCCCeEEEECChHH
Confidence 5555555543 357 5799998743
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=92.64 E-value=1.3 Score=41.71 Aligned_cols=113 Identities=19% Similarity=0.175 Sum_probs=66.3
Q ss_pred CcEEEEcccH--HHHHHHHHHHHCCCeEEEEeCChHHHHHHHHc----ccCCCCee-ccCCHHHHHhhC-CCCcEEEEec
Q psy9637 5 GDIGLIGLAV--MGQNLILNMNDHGFTVVAYNRTTAKVDSFLAN----EAKGTNII-GAHSLEELVKNL-KKPRRVMMLV 76 (490)
Q Consensus 5 ~~IgiIGlG~--MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~----g~~~~~i~-~~~s~~e~v~~l-~~~dvIil~v 76 (490)
.+|.-+|+|. ++..+++.+ ..+.+|+.+|++++.++...+. +. ..++. ...+..+....+ +..|.||+..
T Consensus 42 ~~vlDlG~GtG~~s~~~a~~~-~~~~~v~avD~~~~~~~~a~~n~~~~g~-~~~v~~~~~d~~~~l~~~~~~~D~V~~~~ 119 (198)
T PRK00377 42 DMILDIGCGTGSVTVEASLLV-GETGKVYAVDKDEKAINLTRRNAEKFGV-LNNIVLIKGEAPEILFTINEKFDRIFIGG 119 (198)
T ss_pred CEEEEeCCcCCHHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHhCC-CCCeEEEEechhhhHhhcCCCCCEEEECC
Confidence 4678888866 333333332 2345899999999887754432 21 12232 233454544433 4589999865
Q ss_pred CCCchHHHHHHhhcccCCCCCE-EEcCCCCChHHHHHHHHHHHHccc
Q psy9637 77 KAGSAVDDFIDKLVPLLEKGDI-IIDGGNSEYQDTDRRSKALEAKGL 122 (490)
Q Consensus 77 p~~~~v~~vl~~l~~~l~~g~i-iId~s~~~~~~~~~~~~~l~~~gi 122 (490)
.. .....+++.+...|++|-. +++.. ......+..+.+++.|.
T Consensus 120 ~~-~~~~~~l~~~~~~LkpgG~lv~~~~--~~~~~~~~~~~l~~~g~ 163 (198)
T PRK00377 120 GS-EKLKEIISASWEIIKKGGRIVIDAI--LLETVNNALSALENIGF 163 (198)
T ss_pred Cc-ccHHHHHHHHHHHcCCCcEEEEEee--cHHHHHHHHHHHHHcCC
Confidence 43 3567778887778887654 54443 33444555566666664
|
|
| >PLN02695 GDP-D-mannose-3',5'-epimerase | Back alignment and domain information |
|---|
Probab=92.61 E-value=0.24 Score=51.51 Aligned_cols=36 Identities=14% Similarity=0.280 Sum_probs=32.2
Q ss_pred CCCCcEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCCh
Q psy9637 2 AAKGDIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTT 37 (490)
Q Consensus 2 ~~~~~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~ 37 (490)
+..|+|.|.|. |.+|..++..|.++||+|++.+|..
T Consensus 19 ~~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~ 55 (370)
T PLN02695 19 SEKLRICITGAGGFIASHIARRLKAEGHYIIASDWKK 55 (370)
T ss_pred CCCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEecc
Confidence 44579999986 9999999999999999999999864
|
|
| >COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.60 E-value=0.16 Score=52.38 Aligned_cols=38 Identities=24% Similarity=0.358 Sum_probs=33.8
Q ss_pred CCCCCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChH
Q psy9637 1 MAAKGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTA 38 (490)
Q Consensus 1 M~~~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~ 38 (490)
|..+++|.|||.|.+|...|..|++.|++|+++++.+.
T Consensus 1 ~~~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~ 38 (387)
T COG0665 1 MSMKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEA 38 (387)
T ss_pred CCCcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCcc
Confidence 44567899999999999999999999999999997753
|
|
| >PRK07825 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.59 E-value=0.88 Score=44.60 Aligned_cols=40 Identities=13% Similarity=0.031 Sum_probs=34.8
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHH
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFL 44 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~ 44 (490)
++|-|.|. |.+|..+++.|+++|++|++.+|++++.+.+.
T Consensus 6 ~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~ 46 (273)
T PRK07825 6 KVVAITGGARGIGLATARALAALGARVAIGDLDEALAKETA 46 (273)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 46888875 89999999999999999999999988876654
|
|
| >PRK07774 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.58 E-value=0.68 Score=44.51 Aligned_cols=40 Identities=15% Similarity=0.140 Sum_probs=34.4
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHH
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFL 44 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~ 44 (490)
+++-|.|. |.+|..+++.|+++|++|++.+|+++..+.+.
T Consensus 7 k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~ 47 (250)
T PRK07774 7 KVAIVTGAAGGIGQAYAEALAREGASVVVADINAEGAERVA 47 (250)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 56888886 99999999999999999999999977655543
|
|
| >PRK07523 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.57 E-value=0.69 Score=44.77 Aligned_cols=40 Identities=20% Similarity=0.204 Sum_probs=34.4
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHH
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFL 44 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~ 44 (490)
++|-|.|. |.+|..+++.|++.|++|++.+|++++.+.+.
T Consensus 11 k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~ 51 (255)
T PRK07523 11 RRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAA 51 (255)
T ss_pred CEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 47888874 99999999999999999999999987665543
|
|
| >PRK12828 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.49 E-value=0.8 Score=43.44 Aligned_cols=83 Identities=13% Similarity=0.111 Sum_probs=53.0
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
++|-|.|. |.+|..+++.|+++|++|++.+|++++..+..+.-. . .. ..++..-+.+...++
T Consensus 8 k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~------------~--~~---~~~~~~D~~~~~~~~ 70 (239)
T PRK12828 8 KVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQTLPGVP------------A--DA---LRIGGIDLVDPQAAR 70 (239)
T ss_pred CEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHHHHHHHHh------------h--cC---ceEEEeecCCHHHHH
Confidence 57888874 999999999999999999999999876554332100 0 01 233444444445556
Q ss_pred HHHHhhcccCCCCCEEEcCCC
Q psy9637 84 DFIDKLVPLLEKGDIIIDGGN 104 (490)
Q Consensus 84 ~vl~~l~~~l~~g~iiId~s~ 104 (490)
.+++++.....+-+.||+...
T Consensus 71 ~~~~~~~~~~~~~d~vi~~ag 91 (239)
T PRK12828 71 RAVDEVNRQFGRLDALVNIAG 91 (239)
T ss_pred HHHHHHHHHhCCcCEEEECCc
Confidence 666655544434466666543
|
|
| >PRK07074 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.47 E-value=0.88 Score=44.06 Aligned_cols=41 Identities=22% Similarity=0.229 Sum_probs=35.1
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLA 45 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~ 45 (490)
++|-|.|. |.+|..++..|+++|++|++.+|++++.+.+.+
T Consensus 3 k~ilItGat~~iG~~la~~L~~~g~~v~~~~r~~~~~~~~~~ 44 (257)
T PRK07074 3 RTALVTGAAGGIGQALARRFLAAGDRVLALDIDAAALAAFAD 44 (257)
T ss_pred CEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 36888885 899999999999999999999999887766543
|
|
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=92.42 E-value=0.69 Score=47.44 Aligned_cols=44 Identities=25% Similarity=0.246 Sum_probs=36.4
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeC---ChHHHHHHHHccc
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNR---TTAKVDSFLANEA 48 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr---~~~~~~~l~~~g~ 48 (490)
.+|.|+|.|.+|...+..+...|.+|++.++ ++++.+.+.+.|+
T Consensus 174 ~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga 220 (355)
T cd08230 174 RRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGA 220 (355)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCC
Confidence 4799999999999999888889999999998 6777776655544
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=92.40 E-value=0.16 Score=53.21 Aligned_cols=35 Identities=20% Similarity=0.434 Sum_probs=32.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChH
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTA 38 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~ 38 (490)
..+|.|||.|..|..+|..|+++|++|+++++.+.
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 52 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPA 52 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCc
Confidence 35899999999999999999999999999998764
|
|
| >KOG1370|consensus | Back alignment and domain information |
|---|
Probab=92.38 E-value=0.53 Score=46.92 Aligned_cols=89 Identities=11% Similarity=0.109 Sum_probs=67.0
Q ss_pred cEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHHH
Q psy9637 6 DIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDDF 85 (490)
Q Consensus 6 ~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~v 85 (490)
.+.|.|.|.+|..-|..|...|..|++...+|-.+-+..-+|-+ +.+++|++.. .|+++.++-.. +-+
T Consensus 216 v~Vv~GYGdVGKgCaqaLkg~g~~VivTEiDPI~ALQAaMeG~~------V~tm~ea~~e---~difVTtTGc~---dii 283 (434)
T KOG1370|consen 216 VAVVCGYGDVGKGCAQALKGFGARVIVTEIDPICALQAAMEGYE------VTTLEEAIRE---VDIFVTTTGCK---DII 283 (434)
T ss_pred EEEEeccCccchhHHHHHhhcCcEEEEeccCchHHHHHHhhccE------eeeHHHhhhc---CCEEEEccCCc---chh
Confidence 34566999999999999999999999999988665444434432 6789999987 89998776543 333
Q ss_pred HHhhcccCCCCCEEEcCCCCC
Q psy9637 86 IDKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 86 l~~l~~~l~~g~iiId~s~~~ 106 (490)
..+-...++.+.||.+.|-..
T Consensus 284 ~~~H~~~mk~d~IvCN~Ghfd 304 (434)
T KOG1370|consen 284 TGEHFDQMKNDAIVCNIGHFD 304 (434)
T ss_pred hHHHHHhCcCCcEEecccccc
Confidence 455556678889998888644
|
|
| >COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.32 E-value=0.69 Score=45.74 Aligned_cols=85 Identities=12% Similarity=0.199 Sum_probs=55.1
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchH
Q psy9637 4 KGDIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAV 82 (490)
Q Consensus 4 ~~~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v 82 (490)
++++-|-|+ +-+|..+|+.|+++||+|++..|+.++++++.++-.. -. .. .++++-+=+.+...+
T Consensus 6 ~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~------------~~-~v-~v~vi~~DLs~~~~~ 71 (265)
T COG0300 6 GKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELED------------KT-GV-EVEVIPADLSDPEAL 71 (265)
T ss_pred CcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHH------------hh-Cc-eEEEEECcCCChhHH
Confidence 356777785 8899999999999999999999999999988754221 11 00 023333333444456
Q ss_pred HHHHHhhcccCCCCCEEEcC
Q psy9637 83 DDFIDKLVPLLEKGDIIIDG 102 (490)
Q Consensus 83 ~~vl~~l~~~l~~g~iiId~ 102 (490)
..+.+++.....+=|++|+.
T Consensus 72 ~~l~~~l~~~~~~IdvLVNN 91 (265)
T COG0300 72 ERLEDELKERGGPIDVLVNN 91 (265)
T ss_pred HHHHHHHHhcCCcccEEEEC
Confidence 66666665543333555554
|
|
| >PRK12829 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.30 E-value=0.84 Score=44.23 Aligned_cols=41 Identities=15% Similarity=0.148 Sum_probs=35.2
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLA 45 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~ 45 (490)
++|-|+|. |.+|..++..|+++|++|++.+|+++..+.+.+
T Consensus 12 ~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~ 53 (264)
T PRK12829 12 LRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAALAATAA 53 (264)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 57888874 999999999999999999999999876665543
|
|
| >PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=92.28 E-value=0.66 Score=48.85 Aligned_cols=107 Identities=14% Similarity=0.077 Sum_probs=58.9
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEe--cCCCch-
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMML--VKAGSA- 81 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~--vp~~~~- 81 (490)
|+|.|+|+|.-|.++|+-|. .|++|+++|..+.... +.+.+. ... . .+... .+.+|+|+.+ +|.+.+
T Consensus 1 ~~v~v~G~G~sG~a~a~~L~-~G~~V~~~D~~~~~~~-~~~~gi-----~~~-~-~~~~~-~~~~d~vv~sp~i~~~~~~ 70 (401)
T PRK03815 1 MKISLFGYGKTTKALAKFLK-KFGGVDIFDDKFTESH-KDEEGN-----LLL-P-SNDFD-PNKSDLEIPSPGIPPSHPL 70 (401)
T ss_pred CeEEEEeECHHHHHHHHHHh-CCCeEEEEcCCCCccc-hhhcCC-----EEe-c-HHHcC-cCCCCEEEECCCCCCCCHH
Confidence 47999999999999999999 9999999996533211 111121 121 1 22221 1237877765 343322
Q ss_pred HH---HHHH--hhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcc
Q psy9637 82 VD---DFID--KLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKG 121 (490)
Q Consensus 82 v~---~vl~--~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~g 121 (490)
+. +++. +++..+.+..|-|-+|++.-.++.-+...+...|
T Consensus 71 ~~~a~~i~~~~e~~~~~~~~~i~ITGT~GKTTTt~ml~~iL~~~g 115 (401)
T PRK03815 71 IQKAKNLISEYDYFYDVMPFSIWISGTNGKTTTTQMTTHLLEDFG 115 (401)
T ss_pred HHHHHHHhhHHHHHHHhcCCEEEEECCCcHHHHHHHHHHHHHHCC
Confidence 21 2221 1221122334566666666444444446666666
|
|
| >PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=92.25 E-value=0.96 Score=48.46 Aligned_cols=121 Identities=24% Similarity=0.273 Sum_probs=63.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEec--CCCch
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLV--KAGSA 81 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~v--p~~~~ 81 (490)
..+|+|+|+|.-|.+.++.|. .|.+|+++|.+++....+.+.... .+.. ....+.... +|+|+.+= |...+
T Consensus 6 ~~~v~v~G~G~sG~a~~~~L~-~g~~v~v~D~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~---~d~vV~SPgI~~~~p 78 (454)
T PRK01368 6 KQKIGVFGLGKTGISVYEELQ-NKYDVIVYDDLKANRDIFEELYSK--NAIA-ALSDSRWQN---LDKIVLSPGIPLTHE 78 (454)
T ss_pred CCEEEEEeecHHHHHHHHHHh-CCCEEEEECCCCCchHHHHhhhcC--ceec-cCChhHhhC---CCEEEECCCCCCCCH
Confidence 358999999999999999998 599999999654433222211000 1111 112223333 78877653 22212
Q ss_pred -HHHHH---------Hhhc-ccCCC-CCEEEcCCCCChHHHHHHHHHHHHccccccccCCCC
Q psy9637 82 -VDDFI---------DKLV-PLLEK-GDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSG 131 (490)
Q Consensus 82 -v~~vl---------~~l~-~~l~~-g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsG 131 (490)
+.... -+++ ....+ .-|-|-+||+.-.++.-+...+...|..+.-++..|
T Consensus 79 ~~~~a~~~gi~v~~e~el~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~g~~~~~~GniG 140 (454)
T PRK01368 79 IVKIAKNFNIPITSDIDLLFEKSKNLKFIAITGTNGKSTTTALISHILNSNGLDYPVAGNIG 140 (454)
T ss_pred HHHHHHHCCCceecHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhcCCCeEEEccCC
Confidence 22111 1222 22222 245566666664444444477777676544333333
|
|
| >PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=92.25 E-value=0.19 Score=52.25 Aligned_cols=35 Identities=20% Similarity=0.345 Sum_probs=31.4
Q ss_pred CCCCcEEEEcccHHHHHHHHHHHHC---CCeEEEEeCC
Q psy9637 2 AAKGDIGLIGLAVMGQNLILNMNDH---GFTVVAYNRT 36 (490)
Q Consensus 2 ~~~~~IgiIGlG~MG~~lA~~L~~~---G~~V~v~dr~ 36 (490)
-.+.+|.|||.|..|..+|..|+++ |++|+++++.
T Consensus 1 m~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~ 38 (395)
T PRK05732 1 MSRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF 38 (395)
T ss_pred CCcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence 0346899999999999999999998 9999999995
|
|
| >TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial | Back alignment and domain information |
|---|
Probab=92.23 E-value=0.54 Score=50.52 Aligned_cols=33 Identities=21% Similarity=0.343 Sum_probs=30.9
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCCh
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTT 37 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~ 37 (490)
.+|.|||.|..|...|..|++.|++|++|++.+
T Consensus 142 ~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~ 174 (467)
T TIGR01318 142 KRVAVIGAGPAGLACADILARAGVQVVVFDRHP 174 (467)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC
Confidence 579999999999999999999999999999875
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli. |
| >PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function | Back alignment and domain information |
|---|
Probab=92.22 E-value=0.091 Score=47.34 Aligned_cols=88 Identities=18% Similarity=0.314 Sum_probs=55.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
..+|++||. + .++...|.+.+++|.++|++++....-. ..+ .....++++.. ||+|++.-.+ -+.
T Consensus 11 ~~~V~~VG~--f-~P~~~~l~~~~~~v~v~d~~~~~~~~~~------~~~-~~~~~~~~l~~---aD~viiTGsT--lvN 75 (147)
T PF04016_consen 11 GDKVGMVGY--F-QPLVEKLKERGAEVRVFDLNPDNIGEEP------GDV-PDEDAEEILPW---ADVVIITGST--LVN 75 (147)
T ss_dssp TSEEEEES-----HCCHHHHCCCCSEEEEEESSGGG--SSC------T-E-EGGGHHHHGGG----SEEEEECHH--CCT
T ss_pred CCEEEEEcC--c-HHHHHHHhcCCCCEEEEECCCCCCCCCC------CcC-CHHHHHHHHcc---CCEEEEEeee--eec
Confidence 368999995 2 2478888889999999999987543210 111 34455556555 8999876432 455
Q ss_pred HHHHhhcccCCCCCEEEcCCCCC
Q psy9637 84 DFIDKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 84 ~vl~~l~~~l~~g~iiId~s~~~ 106 (490)
..++.++...+++..++-.|.+.
T Consensus 76 ~Ti~~iL~~~~~~~~vil~GpS~ 98 (147)
T PF04016_consen 76 GTIDDILELARNAREVILYGPSA 98 (147)
T ss_dssp TTHHHHHHHTTTSSEEEEESCCG
T ss_pred CCHHHHHHhCccCCeEEEEecCc
Confidence 66677777766677776666654
|
; PDB: 3L5O_B 3NPG_A. |
| >PRK07538 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=92.21 E-value=0.16 Score=53.46 Aligned_cols=34 Identities=21% Similarity=0.386 Sum_probs=31.9
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTA 38 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~ 38 (490)
|+|.|||.|..|..+|..|+++|++|+++++.++
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 34 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPE 34 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCc
Confidence 5899999999999999999999999999999864
|
|
| >PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=92.20 E-value=1 Score=48.34 Aligned_cols=32 Identities=13% Similarity=0.006 Sum_probs=30.1
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCC
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRT 36 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~ 36 (490)
++|+|+|+|+-|.+.++-|.+.|.+|+++|.+
T Consensus 9 ~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~ 40 (468)
T PRK04690 9 RRVALWGWGREGRAAYRALRAHLPAQALTLFC 40 (468)
T ss_pred CEEEEEccchhhHHHHHHHHHcCCEEEEEcCC
Confidence 58999999999999999999999999999954
|
|
| >PRK07045 putative monooxygenase; Reviewed | Back alignment and domain information |
|---|
Probab=92.19 E-value=0.17 Score=52.67 Aligned_cols=38 Identities=21% Similarity=0.297 Sum_probs=34.1
Q ss_pred CC-CCCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChH
Q psy9637 1 MA-AKGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTA 38 (490)
Q Consensus 1 M~-~~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~ 38 (490)
|. .+.+|.|||.|..|...|..|+++|++|+++++.++
T Consensus 1 ~~~~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~ 39 (388)
T PRK07045 1 MKNNPVDVLINGSGIAGVALAHLLGARGHSVTVVERAAR 39 (388)
T ss_pred CCCceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCc
Confidence 44 456899999999999999999999999999998865
|
|
| >KOG0023|consensus | Back alignment and domain information |
|---|
Probab=92.17 E-value=0.42 Score=48.15 Aligned_cols=40 Identities=18% Similarity=0.414 Sum_probs=29.8
Q ss_pred CcEEEEcccHHHHHHHHHHHH-CCCeEEEEeCChHHHHHHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMND-HGFTVVAYNRTTAKVDSFLA 45 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~-~G~~V~v~dr~~~~~~~l~~ 45 (490)
++|||+|+|-.|. ||..+++ -|++|+++|++..+.+++.+
T Consensus 183 ~~vgI~GlGGLGh-~aVq~AKAMG~rV~vis~~~~kkeea~~ 223 (360)
T KOG0023|consen 183 KWVGIVGLGGLGH-MAVQYAKAMGMRVTVISTSSKKKEEAIK 223 (360)
T ss_pred cEEEEecCcccch-HHHHHHHHhCcEEEEEeCCchhHHHHHH
Confidence 6799999887664 5555554 59999999999866555544
|
|
| >TIGR03855 NAD_NadX aspartate dehydrogenase | Back alignment and domain information |
|---|
Probab=92.15 E-value=0.77 Score=44.52 Aligned_cols=84 Identities=13% Similarity=0.214 Sum_probs=54.4
Q ss_pred EEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHHHHHhhcccCCCCCEEEcCCCC---C
Q psy9637 30 VVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNS---E 106 (490)
Q Consensus 30 V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~s~~---~ 106 (490)
|.+||+++++.+.+.+... +..+++++++++ +.+|+|++|.|+. ...++...+ |+.|.-|+-.+.. .
T Consensus 5 vaV~D~~~e~a~~~a~~~g----~~~~~d~~eLl~--~~vDaVviatp~~-~H~e~a~~a---L~aGkhVl~~s~gAlad 74 (229)
T TIGR03855 5 AAVYDRNPKDAKELAERCG----AKIVSDFDEFLP--EDVDIVVEAASQE-AVKEYAEKI---LKNGKDLLIMSVGALAD 74 (229)
T ss_pred EEEECCCHHHHHHHHHHhC----CceECCHHHHhc--CCCCEEEECCChH-HHHHHHHHH---HHCCCCEEEECCcccCC
Confidence 4589999999998876532 235789999875 2599999999996 555554443 3455433334443 2
Q ss_pred hHHHHHHHHHHHHcccc
Q psy9637 107 YQDTDRRSKALEAKGLL 123 (490)
Q Consensus 107 ~~~~~~~~~~l~~~gi~ 123 (490)
....+++.+..++.|..
T Consensus 75 ~e~~~~l~~aA~~~g~~ 91 (229)
T TIGR03855 75 RELRERLREVARSSGRK 91 (229)
T ss_pred HHHHHHHHHHHHhcCCE
Confidence 34455555666666654
|
Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur. |
| >PLN02427 UDP-apiose/xylose synthase | Back alignment and domain information |
|---|
Probab=92.13 E-value=0.4 Score=49.89 Aligned_cols=41 Identities=22% Similarity=0.295 Sum_probs=34.9
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHHC-CCeEEEEeCChHHHHHHH
Q psy9637 4 KGDIGLIG-LAVMGQNLILNMNDH-GFTVVAYNRTTAKVDSFL 44 (490)
Q Consensus 4 ~~~IgiIG-lG~MG~~lA~~L~~~-G~~V~v~dr~~~~~~~l~ 44 (490)
.|||.|.| .|.+|+.+++.|+++ |++|+++||++++.+.+.
T Consensus 14 ~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~ 56 (386)
T PLN02427 14 PLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLL 56 (386)
T ss_pred CcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhh
Confidence 36899998 599999999999998 599999999877766554
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 490 | ||||
| 2jkv_A | 505 | Structure Of Human Phosphogluconate Dehydrogenase I | 2e-70 | ||
| 2jkv_A | 505 | Structure Of Human Phosphogluconate Dehydrogenase I | 6e-66 | ||
| 4gwg_A | 484 | Crystal Structure Analysis Of 6-Phosphogluconate De | 2e-70 | ||
| 4gwg_A | 484 | Crystal Structure Analysis Of 6-Phosphogluconate De | 7e-66 | ||
| 1pgn_A | 482 | Crystallographic Study Of Coenzyme, Coenzyme Analog | 6e-68 | ||
| 1pgn_A | 482 | Crystallographic Study Of Coenzyme, Coenzyme Analog | 1e-63 | ||
| 2p4q_A | 497 | Crystal Structure Analysis Of Gnd1 In Saccharomyces | 7e-60 | ||
| 2p4q_A | 497 | Crystal Structure Analysis Of Gnd1 In Saccharomyces | 2e-58 | ||
| 2w90_A | 471 | Geobacillus Stearothermophilus 6-Phosphogluconate D | 1e-50 | ||
| 2w90_A | 471 | Geobacillus Stearothermophilus 6-Phosphogluconate D | 4e-49 | ||
| 2w8z_A | 470 | Geobacillus Stearothermophilus 6-Phosphogluconate D | 1e-50 | ||
| 2w8z_A | 470 | Geobacillus Stearothermophilus 6-Phosphogluconate D | 4e-49 | ||
| 3fwn_A | 480 | Dimeric 6-Phosphogluconate Dehydrogenase Complexed | 1e-47 | ||
| 3fwn_A | 480 | Dimeric 6-Phosphogluconate Dehydrogenase Complexed | 5e-46 | ||
| 2iyo_A | 472 | Structural Characterization Of A Bacterial 6pdh Rev | 2e-47 | ||
| 2iyp_A | 473 | Product Rup Length = 473 | 3e-47 | ||
| 2iz0_A | 474 | Pex Inhibitor-Home Data Length = 474 | 3e-47 | ||
| 2zya_A | 480 | Dimeric 6-Phosphogluconate Dehydrogenase Complexed | 2e-46 | ||
| 2zya_A | 480 | Dimeric 6-Phosphogluconate Dehydrogenase Complexed | 6e-46 | ||
| 2zyg_A | 480 | Apo-Form Of Dimeric 6-Phosphogluconate Dehydrogenas | 8e-46 | ||
| 2zyg_A | 480 | Apo-Form Of Dimeric 6-Phosphogluconate Dehydrogenas | 1e-45 | ||
| 1pgj_A | 478 | X-Ray Structure Of 6-Phosphogluconate Dehydrogenase | 8e-32 | ||
| 1pgj_A | 478 | X-Ray Structure Of 6-Phosphogluconate Dehydrogenase | 2e-21 | ||
| 4e21_A | 358 | The Crystal Structure Of 6-Phosphogluconate Dehydro | 2e-23 | ||
| 4e21_A | 358 | The Crystal Structure Of 6-Phosphogluconate Dehydro | 4e-09 | ||
| 3doj_A | 310 | Structure Of Glyoxylate Reductase 1 From Arabidopsi | 5e-05 | ||
| 1wp4_A | 289 | Structure Of Tt368 Protein From Thermus Thermophilu | 2e-04 |
| >pdb|2JKV|A Chain A, Structure Of Human Phosphogluconate Dehydrogenase In Complex With Nadph At 2.53a Length = 505 | Back alignment and structure |
|
| >pdb|2JKV|A Chain A, Structure Of Human Phosphogluconate Dehydrogenase In Complex With Nadph At 2.53a Length = 505 | Back alignment and structure |
|
| >pdb|4GWG|A Chain A, Crystal Structure Analysis Of 6-Phosphogluconate Dehydrogenase Apo- Form Length = 484 | Back alignment and structure |
|
| >pdb|4GWG|A Chain A, Crystal Structure Analysis Of 6-Phosphogluconate Dehydrogenase Apo- Form Length = 484 | Back alignment and structure |
|
| >pdb|1PGN|A Chain A, Crystallographic Study Of Coenzyme, Coenzyme Analogue And Substrate Binding In 6-Phosphogluconate Dehydrogenase: Implications For Nadp Specificity And The Enzyme Mechanism Length = 482 | Back alignment and structure |
|
| >pdb|1PGN|A Chain A, Crystallographic Study Of Coenzyme, Coenzyme Analogue And Substrate Binding In 6-Phosphogluconate Dehydrogenase: Implications For Nadp Specificity And The Enzyme Mechanism Length = 482 | Back alignment and structure |
|
| >pdb|2P4Q|A Chain A, Crystal Structure Analysis Of Gnd1 In Saccharomyces Cerevisiae Length = 497 | Back alignment and structure |
|
| >pdb|2P4Q|A Chain A, Crystal Structure Analysis Of Gnd1 In Saccharomyces Cerevisiae Length = 497 | Back alignment and structure |
|
| >pdb|2W90|A Chain A, Geobacillus Stearothermophilus 6-Phosphogluconate Dehydrogenase With Bound 6-Phosphogluconate Length = 471 | Back alignment and structure |
|
| >pdb|2W90|A Chain A, Geobacillus Stearothermophilus 6-Phosphogluconate Dehydrogenase With Bound 6-Phosphogluconate Length = 471 | Back alignment and structure |
|
| >pdb|2W8Z|A Chain A, Geobacillus Stearothermophilus 6-Phosphogluconate Dehydrogenase With Bound 6-Phosphogluconate Length = 470 | Back alignment and structure |
|
| >pdb|2W8Z|A Chain A, Geobacillus Stearothermophilus 6-Phosphogluconate Dehydrogenase With Bound 6-Phosphogluconate Length = 470 | Back alignment and structure |
|
| >pdb|3FWN|A Chain A, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With 6- Phosphogluconate And 2'-Monophosphoadenosine-5'-Diphosphate Length = 480 | Back alignment and structure |
|
| >pdb|3FWN|A Chain A, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With 6- Phosphogluconate And 2'-Monophosphoadenosine-5'-Diphosphate Length = 480 | Back alignment and structure |
|
| >pdb|2IYO|A Chain A, Structural Characterization Of A Bacterial 6pdh Reveals Aspects Of Specificity, Mechanism And Mode Of Inhibition Length = 472 | Back alignment and structure |
|
| >pdb|2IYP|A Chain A, Product Rup Length = 473 | Back alignment and structure |
|
| >pdb|2IZ0|A Chain A, Pex Inhibitor-Home Data Length = 474 | Back alignment and structure |
|
| >pdb|2ZYA|A Chain A, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With 6- Phosphogluconate Length = 480 | Back alignment and structure |
|
| >pdb|2ZYA|A Chain A, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With 6- Phosphogluconate Length = 480 | Back alignment and structure |
|
| >pdb|2ZYG|A Chain A, Apo-Form Of Dimeric 6-Phosphogluconate Dehydrogenase Length = 480 | Back alignment and structure |
|
| >pdb|2ZYG|A Chain A, Apo-Form Of Dimeric 6-Phosphogluconate Dehydrogenase Length = 480 | Back alignment and structure |
|
| >pdb|1PGJ|A Chain A, X-Ray Structure Of 6-Phosphogluconate Dehydrogenase From The Protozoan Parasite T. Brucei Length = 478 | Back alignment and structure |
|
| >pdb|1PGJ|A Chain A, X-Ray Structure Of 6-Phosphogluconate Dehydrogenase From The Protozoan Parasite T. Brucei Length = 478 | Back alignment and structure |
|
| >pdb|4E21|A Chain A, The Crystal Structure Of 6-Phosphogluconate Dehydrogenase From Geobacter Metallireducens Length = 358 | Back alignment and structure |
|
| >pdb|4E21|A Chain A, The Crystal Structure Of 6-Phosphogluconate Dehydrogenase From Geobacter Metallireducens Length = 358 | Back alignment and structure |
|
| >pdb|3DOJ|A Chain A, Structure Of Glyoxylate Reductase 1 From Arabidopsis (Atglyr1) Length = 310 | Back alignment and structure |
|
| >pdb|1WP4|A Chain A, Structure Of Tt368 Protein From Thermus Thermophilus Hb8 Length = 289 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A* Length = 482 | Back alignment and structure |
|---|
Score = 317 bits (815), Expect = e-104
Identities = 120/171 (70%), Positives = 133/171 (77%)
Query: 167 TSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRG 226
+ DKK FLE+IR+ALYASKI+SYAQGFML+RQAA GW LNYGGIALMWRG
Sbjct: 304 KGPQNIPFEGDKKSFLEDIRKALYASKIISYAQGFMLLRQAATEFGWTLNYGGIALMWRG 363
Query: 227 GCIIRSVFLGNIKAAFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSALLGIPTPAFA 286
GCIIRSVFLG IK AFD+NP L NLLLD FFK A+ Q SWR +S GIP P F
Sbjct: 364 GCIIRSVFLGKIKDAFDRNPGLQNLLLDDFFKSAVENCQDSWRRAISTGVQAGIPMPCFT 423
Query: 287 TALAFYDGYRSKRLPANLLQAQRDYFGAHTYELLAAPGKFVHTNWTGHGGN 337
TAL+FYDGYR LPANL+QAQRDYFGAHTYELLA PG+F+HTNWTGHGG+
Sbjct: 424 TALSFYDGYRHAMLPANLIQAQRDYFGAHTYELLAKPGQFIHTNWTGHGGS 474
|
| >2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A* Length = 482 | Back alignment and structure |
|---|
Score = 309 bits (794), Expect = e-100
Identities = 119/158 (75%), Positives = 137/158 (86%)
Query: 3 AKGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEEL 62
A+ DI LIGLAVMGQNLILNMNDHGF V A+NRT +KVD FLANEAKGT ++GAHSLEE+
Sbjct: 1 AQADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEM 60
Query: 63 VKNLKKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGL 122
V LKKPRR+++LVKAG AVD+FI+KLVPLL+ GDIIIDGGNSEY+DT RR + L+ KG+
Sbjct: 61 VSKLKKPRRIILLVKAGQAVDNFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGI 120
Query: 123 LYVGCGVSGGEDGARYGPSLMPGGNPAAWPALKPIFQK 160
L+VG GVSGGEDGARYGPSLMPGGN AWP +K IFQ
Sbjct: 121 LFVGSGVSGGEDGARYGPSLMPGGNKEAWPHIKAIFQG 158
|
| >2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A* Length = 482 | Back alignment and structure |
|---|
Score = 301 bits (773), Expect = 2e-97
Identities = 114/152 (75%), Positives = 128/152 (84%), Gaps = 1/152 (0%)
Query: 338 SIAAKVGS-EPCCDWVGEQGAGHFVKMVHNGIEYGDMQLICEAYHLMTGALGMSHDEMSA 396
IAAKVG+ EPCCDWVG+ GAGHFVKMVHNGIEYGDMQLICEAYHLM LG+ H EM+
Sbjct: 158 GIAAKVGTGEPCCDWVGDDGAGHFVKMVHNGIEYGDMQLICEAYHLMKDVLGLGHKEMAK 217
Query: 397 VFEDWNKGELDSFLIEITKDILKFKDTDGAPLVEKIKDYAGQKGTGKWTAISALDYGVPV 456
FE+WNK ELDSFLIEIT ILKF+D DG L+ KI+D AGQKGTGKWTAISAL+YGVPV
Sbjct: 218 AFEEWNKTELDSFLIEITASILKFQDADGKHLLPKIRDSAGQKGTGKWTAISALEYGVPV 277
Query: 457 TLIGESVFSRCLSSLFDERQKASQVLQGPNPT 488
TLIGE+VF+RCLSSL DER +AS+ L+GP
Sbjct: 278 TLIGEAVFARCLSSLKDERIQASKKLKGPQNI 309
|
| >2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae} Length = 497 | Back alignment and structure |
|---|
Score = 308 bits (791), Expect = e-100
Identities = 107/192 (55%), Positives = 134/192 (69%), Gaps = 7/192 (3%)
Query: 153 ALKPIFQKLNPSFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHG 212
ALK + + +D+++F++++ QALYASKI+SYAQGFML+R+AA +G
Sbjct: 298 ALKNERIRASKVLPGPEVPKDAVKDREQFVDDLEQALYASKIISYAQGFMLIREAAATYG 357
Query: 213 WKLNYGGIALMWRGGCIIRSVFLGNIKAAFDKNPALSNLLLDPFFKDAIHATQSSWRAVV 272
WKLN IALMWRGGCIIRSVFLG I A+ + P L NLL + FF DA+ QS WR +
Sbjct: 358 WKLNNPAIALMWRGGCIIRSVFLGQITKAYREEPDLENLLFNKFFADAVTKAQSGWRKSI 417
Query: 273 SQSALLGIPTPAFATALAFYDGYRSKRLPANLLQAQRDYFGAHTYELLAAPG-------K 325
+ + GIPTPAF+TAL+FYDGYRS+RLPANLLQAQRDYFGAHT+ +L K
Sbjct: 418 ALATTYGIPTPAFSTALSFYDGYRSERLPANLLQAQRDYFGAHTFRVLPECASDNLPVDK 477
Query: 326 FVHTNWTGHGGN 337
+H NWTGHGGN
Sbjct: 478 DIHINWTGHGGN 489
|
| >2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae} Length = 497 | Back alignment and structure |
|---|
Score = 306 bits (785), Expect = 4e-99
Identities = 108/158 (68%), Positives = 130/158 (82%)
Query: 3 AKGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEEL 62
D GLIGLAVMGQNLILN DHGFTV AYNRT +KVD FLANEAKG +IIGA S+E+
Sbjct: 9 MSADFGLIGLAVMGQNLILNAADHGFTVCAYNRTQSKVDHFLANEAKGKSIIGATSIEDF 68
Query: 63 VKNLKKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGL 122
+ LK+PR+VM+LVKAG+ VD I+++VPLLEKGDIIIDGGNS + D++RR + L+ KG+
Sbjct: 69 ISKLKRPRKVMLLVKAGAPVDALINQIVPLLEKGDIIIDGGNSHFPDSNRRYEELKKKGI 128
Query: 123 LYVGCGVSGGEDGARYGPSLMPGGNPAAWPALKPIFQK 160
L+VG GVSGGE+GARYGPSLMPGG+ AWP +K IFQ
Sbjct: 129 LFVGSGVSGGEEGARYGPSLMPGGSEEAWPHIKNIFQS 166
|
| >2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae} Length = 497 | Back alignment and structure |
|---|
Score = 299 bits (767), Expect = 2e-96
Identities = 105/151 (69%), Positives = 121/151 (80%)
Query: 338 SIAAKVGSEPCCDWVGEQGAGHFVKMVHNGIEYGDMQLICEAYHLMTGALGMSHDEMSAV 397
SI+AK EPCC+WVG GAGH+VKMVHNGIEYGDMQLICEAY +M G + E+S V
Sbjct: 166 SISAKSDGEPCCEWVGPAGAGHYVKMVHNGIEYGDMQLICEAYDIMKRLGGFTDKEISDV 225
Query: 398 FEDWNKGELDSFLIEITKDILKFKDTDGAPLVEKIKDYAGQKGTGKWTAISALDYGVPVT 457
F WN G LDSFL+EIT+DILKF D DG PLVEKI D AGQKGTGKWTAI+ALD G+PVT
Sbjct: 226 FAKWNNGVLDSFLVEITRDILKFDDVDGKPLVEKIMDTAGQKGTGKWTAINALDLGMPVT 285
Query: 458 LIGESVFSRCLSSLFDERQKASQVLQGPNPT 488
LIGE+VF+RCLS+L +ER +AS+VL GP
Sbjct: 286 LIGEAVFARCLSALKNERIRASKVLPGPEVP 316
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} Length = 358 | Back alignment and structure |
|---|
Score = 300 bits (771), Expect = 9e-99
Identities = 102/362 (28%), Positives = 153/362 (42%), Gaps = 67/362 (18%)
Query: 1 MAAKGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLE 60
IG+IGL MG +++ + G V Y+ V + I GA S+E
Sbjct: 19 YFQSMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNVNAVQ-----ALEREGIAGARSIE 73
Query: 61 ELVKNLKKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAK 120
E L KPR V ++V A VD + ++ PLL DI+IDGGNS YQD RR+ + A+
Sbjct: 74 EFCAKLVKPRVVWLMVPAA-VVDSMLQRMTPLLAANDIVIDGGNSHYQDDIRRADQMRAQ 132
Query: 121 GLLYVGCGVSGGEDGARYGPSLMPGGNPAAWPALKPIFQKLNPSFETSAPTPKPQRDKKE 180
G+ YV G SGG G G LM GG A L P+F+ L P + TP ++ +
Sbjct: 133 GITYVDVGTSGGIFGLERGYCLMIGGEKQAVERLDPVFRTLAPGIGAAPRTPGREKREGT 192
Query: 181 FLENIRQALYA--------SKIV----------SYAQGFMLMRQAA-------------- 208
L+ K+V +YA+G ++ A
Sbjct: 193 AELGY---LHCGPSGAGHFVKMVHNGIEYGLMAAYAEGLNILHHANAGKEGQGADAETAP 249
Query: 209 ----EIHGWKLNYGGIALMWRGGCIIRSVFLGNIKA-AFDKNPALSNLLLDPFFKDAIHA 263
+ + + L+ I +WR G +I S +L ++ A A +P L F+
Sbjct: 250 LRNPDFYRYDLDLADITEVWRRGSVISS-WLLDLSATALLDSPDLQE------FQG--RV 300
Query: 264 TQSS---WRAVVSQSAL-LGIPTPAFATALAFYDGYRS--KRLPAN-LLQAQRDYFGAHT 316
+ S W +A+ G+P ++AL Y+ + S + AN LL A R FG H
Sbjct: 301 SDSGEGRW---TVAAAIDEGVPAHVLSSAL--YERFSSRGEDDFANRLLSAMRYEFGGHR 355
Query: 317 YE 318
+
Sbjct: 356 EK 357
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} Length = 358 | Back alignment and structure |
|---|
Score = 213 bits (545), Expect = 4e-65
Identities = 44/183 (24%), Positives = 78/183 (42%), Gaps = 42/183 (22%)
Query: 338 SIAAKVGSEPCCD--------------WVGEQGAGHFVKMVHNGIEYGDMQLICEAYHLM 383
++A +G+ P G GAGHFVKMVHNGIEYG M E +++
Sbjct: 172 TLAPGIGAAPRTPGREKREGTAELGYLHCGPSGAGHFVKMVHNGIEYGLMAAYAEGLNIL 231
Query: 384 TGALGMSHD--------------------EMSAVFEDWNKGE-LDSFLIEITKDILKFKD 422
A +++ + E W +G + S+L++++ L
Sbjct: 232 HHANAGKEGQGADAETAPLRNPDFYRYDLDLADITEVWRRGSVISSWLLDLSATALLDS- 290
Query: 423 TDGAPLVEKIKDYAGQKGTGKWTAISALDYGVPVTLIGESVFSRCLSSLFDERQKASQVL 482
P +++ + G G+WT +A+D GVP ++ +++ R S D+ A+++L
Sbjct: 291 ----PDLQEFQGRVSDSGEGRWTVAAAIDEGVPAHVLSSALYERFSSRGEDDF--ANRLL 344
Query: 483 QGP 485
Sbjct: 345 SAM 347
|
| >2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A* Length = 480 | Back alignment and structure |
|---|
Score = 301 bits (773), Expect = 2e-97
Identities = 88/153 (57%), Positives = 109/153 (71%), Gaps = 1/153 (0%)
Query: 338 SIAAKVGS-EPCCDWVGEQGAGHFVKMVHNGIEYGDMQLICEAYHLMTGALGMSHDEMSA 396
IAA EPC ++G GAGH+VKMVHNGIEYGDMQLI EAY L+ G L ++++E++
Sbjct: 170 KIAAVAEDGEPCVTYIGADGAGHYVKMVHNGIEYGDMQLIAEAYSLLKGGLNLTNEELAQ 229
Query: 397 VFEDWNKGELDSFLIEITKDILKFKDTDGAPLVEKIKDYAGQKGTGKWTAISALDYGVPV 456
F +WN GEL S+LI+ITKDI KD DG LV+ I D A KGTGKWT+ SALD G P+
Sbjct: 230 TFTEWNNGELSSYLIDITKDIFTKKDEDGNYLVDVILDEAANKGTGKWTSQSALDLGEPL 289
Query: 457 TLIGESVFSRCLSSLFDERQKASQVLQGPNPTY 489
+LI ESVF+R +SSL D+R AS+VL GP
Sbjct: 290 SLITESVFARYISSLKDQRVAASKVLSGPQAQP 322
|
| >2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A* Length = 480 | Back alignment and structure |
|---|
Score = 298 bits (765), Expect = 3e-96
Identities = 75/158 (47%), Positives = 112/158 (70%), Gaps = 1/158 (0%)
Query: 3 AKGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEEL 62
+K IG++G+AVMG+NL LN+ G+TV +NR+ K + +A E G ++ ++++E
Sbjct: 14 SKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIA-ENPGKKLVPYYTVKEF 72
Query: 63 VKNLKKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGL 122
V++L+ PRR++++VKAG+ D ID L P L+KGDIIIDGGN+ +QDT RR++ L A+G
Sbjct: 73 VESLETPRRILLMVKAGAGTDAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGF 132
Query: 123 LYVGCGVSGGEDGARYGPSLMPGGNPAAWPALKPIFQK 160
++G GVSGGE+GA GPS+MPGG A+ + PI K
Sbjct: 133 NFIGTGVSGGEEGALKGPSIMPGGQKEAYELVAPILTK 170
|
| >2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A* Length = 480 | Back alignment and structure |
|---|
Score = 296 bits (759), Expect = 2e-95
Identities = 87/164 (53%), Positives = 111/164 (67%), Gaps = 1/164 (0%)
Query: 168 SAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGG 227
S P +P DK EF+E +R+ALY KIVSYAQGF +R A+E + W LNYG IA ++R G
Sbjct: 316 SGPQAQPAGDKAEFIEKVRRALYLGKIVSYAQGFSQLRAASEEYNWDLNYGEIAKIFRAG 375
Query: 228 CIIRSVFLGNIKAAFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSALLGIPTPAFAT 287
CIIR+ FL I A +NP ++NLLL P+FK Q + R VV+ + GIP P F+
Sbjct: 376 CIIRAQFLQKITDACAENPQIANLLLAPYFKQIADDYQQALRDVVAYAVQNGIPVPTFSA 435
Query: 288 ALAFYDGYRSKRLPANLLQAQRDYFGAHTYELLAAPGKFVHTNW 331
A+A+YD YR+ LPANL+QAQRDYFGAHTY+ + G F HT W
Sbjct: 436 AVAYYDSYRAAVLPANLIQAQRDYFGAHTYKRIDKEGVF-HTEW 478
|
| >2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A* Length = 474 | Back alignment and structure |
|---|
Score = 298 bits (766), Expect = 2e-96
Identities = 76/158 (48%), Positives = 111/158 (70%), Gaps = 1/158 (0%)
Query: 3 AKGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEEL 62
A+ + G++G+AVMG+NL LN+ G+TV YNRTT+K + E + N++ +LEE
Sbjct: 4 AQANFGVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEVF-KEHQDKNLVFTKTLEEF 62
Query: 63 VKNLKKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGL 122
V +L+KPRR+M++V+AG+A D I L+PLL+ GDI+IDGGN+ + DT RR+ L G+
Sbjct: 63 VGSLEKPRRIMLMVQAGAATDATIKSLLPLLDIGDILIDGGNTHFPDTMRRNAELADSGI 122
Query: 123 LYVGCGVSGGEDGARYGPSLMPGGNPAAWPALKPIFQK 160
++G GVSGGE GA GPS+MPGG A+ + PIF++
Sbjct: 123 NFIGTGVSGGEKGALLGPSMMPGGQKEAYDLVAPIFEQ 160
|
| >2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A* Length = 474 | Back alignment and structure |
|---|
Score = 296 bits (760), Expect = 1e-95
Identities = 90/166 (54%), Positives = 109/166 (65%), Gaps = 1/166 (0%)
Query: 168 SAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGG 227
S P DKKE +E IR+ALY SKI+SYAQGF +R+A+E W L YG IA +WR G
Sbjct: 308 SGPALDFSGDKKEVIEKIRKALYFSKIMSYAQGFAQLRKASEEFDWDLPYGTIAQIWRAG 367
Query: 228 CIIRSVFLGNIKAAFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSALLGIPTPAFAT 287
CIIR+ FL NI AFDK+ L NLLLD +F D Q + R VVS + G P P F +
Sbjct: 368 CIIRAEFLQNITDAFDKDSELENLLLDDYFVDITKRYQEAVRDVVSLAVQAGTPIPTFTS 427
Query: 288 ALAFYDGYRSKRLPANLLQAQRDYFGAHTYELLAAPGKFVHTNWTG 333
A+++YD YRS+ LPANL+QAQRDYFGAHTYE G F H +W
Sbjct: 428 AISYYDSYRSENLPANLIQAQRDYFGAHTYERTDKAGIF-HYDWYT 472
|
| >2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A* Length = 474 | Back alignment and structure |
|---|
Score = 295 bits (758), Expect = 3e-95
Identities = 93/156 (59%), Positives = 118/156 (75%), Gaps = 3/156 (1%)
Query: 338 SIAAKVGS--EPCCDWVGEQGAGHFVKMVHNGIEYGDMQLICEAYHLMTGALGMSHDEMS 395
IAAK +PC ++G GAGH+VKMVHNGIEYGDMQLI E+Y L+ LG+S+ E+
Sbjct: 160 QIAAKAPQDGKPCVAYMGANGAGHYVKMVHNGIEYGDMQLIAESYDLLKRILGLSNAEIQ 219
Query: 396 AVFEDWNKGELDSFLIEITKDILKFKDTDG-APLVEKIKDYAGQKGTGKWTAISALDYGV 454
A+FE+WN+GELDS+LIEITK++LK KD +G +V+KI D AG KGTGKWT+ SALD GV
Sbjct: 220 AIFEEWNEGELDSYLIEITKEVLKRKDDEGEGYIVDKILDKAGNKGTGKWTSESALDLGV 279
Query: 455 PVTLIGESVFSRCLSSLFDERQKASQVLQGPNPTYK 490
P+ LI ESVF+R +S+ DER KAS+VL GP +
Sbjct: 280 PLPLITESVFARYISTYKDERVKASKVLSGPALDFS 315
|
| >1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6 Length = 478 | Back alignment and structure |
|---|
Score = 281 bits (720), Expect = 1e-89
Identities = 68/158 (43%), Positives = 105/158 (66%), Gaps = 3/158 (1%)
Query: 6 DIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGT---NIIGAHSLEEL 62
D+G++GL VMG NL LN+ + GF V +NRT +K + F+ A N+ ++E
Sbjct: 3 DVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAF 62
Query: 63 VKNLKKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGL 122
+LKKPR+ ++LV+AG+A D I++L + EKGDI++D GN+ ++D RR++ LEA GL
Sbjct: 63 AASLKKPRKALILVQAGAATDSTIEQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGL 122
Query: 123 LYVGCGVSGGEDGARYGPSLMPGGNPAAWPALKPIFQK 160
++G G+SGGE+GAR GP+ PGG + W ++PI +
Sbjct: 123 RFLGMGISGGEEGARKGPAFFPGGTLSVWEEIRPIVEA 160
|
| >1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6 Length = 478 | Back alignment and structure |
|---|
Score = 278 bits (712), Expect = 2e-88
Identities = 56/153 (36%), Positives = 84/153 (54%), Gaps = 3/153 (1%)
Query: 338 SIAAKVGS-EPCCDWVGEQGAGHFVKMVHNGIEYGDMQLICEAYHLMTGALGMSHDEMSA 396
+ AAK PC G GAG VKM HN EY +Q+ E + ++ +G+++DE++A
Sbjct: 160 AAAAKADDGRPCVTMNGSGGAGSCVKMYHNSGEYAILQIWGEVFDILRA-MGLNNDEVAA 218
Query: 397 VFEDW-NKGELDSFLIEITKDILKFKDTDGAPLVEKIKDYAGQKGTGKWTAISALDYGVP 455
V EDW +K L S++++I+ + KD DG+ L E + D G KGTG W+A AL+ GVP
Sbjct: 219 VLEDWKSKNFLKSYMLDISIAAARAKDKDGSYLTEHVMDRIGSKGTGLWSAQEALEIGVP 278
Query: 456 VTLIGESVFSRCLSSLFDERQKASQVLQGPNPT 488
+ +V SR + ERQ + G +
Sbjct: 279 APSLNMAVVSRQFTMYKTERQANASNAPGITQS 311
|
| >1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6 Length = 478 | Back alignment and structure |
|---|
Score = 275 bits (705), Expect = 2e-87
Identities = 44/176 (25%), Positives = 78/176 (44%), Gaps = 5/176 (2%)
Query: 159 QKLNPSFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYG 218
++ T K + ++ + ++ + I YAQ F +R+ ++H + LN
Sbjct: 303 SNAPGITQSPGYTLKNKSPSGPEIKQLYDSVCIAIISCYAQMFQCLREMDKVHNFGLNLP 362
Query: 219 GIALMWRGGCIIRSVFLGNIKAAFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSAL- 277
+R GCI++ L + AF+KNP +SNL+ F+ I A ++R +V+
Sbjct: 363 ATIATFRAGCILQGYLLKPMTEAFEKNPNISNLMCA--FQTEIRAGLQNYRDMVALITSK 420
Query: 278 LGIPTPAFATALAFYDGYRSKRLP-ANLLQAQRDYFGAHTYELLAAPGKFVHTNWT 332
L + P + +L + + L L+ QRD FG H YE + G+ W
Sbjct: 421 LEVSIPVLSASLNYVTAMFTPTLKYGQLVSLQRDVFGRHGYERVDKDGRE-SFQWP 475
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} Length = 306 | Back alignment and structure |
|---|
Score = 77.3 bits (191), Expect = 7e-16
Identities = 24/163 (14%), Positives = 53/163 (32%), Gaps = 10/163 (6%)
Query: 1 MAAKGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLE 60
+ + D+ +IGL MG + + G V +NR+ K + +A A S++
Sbjct: 6 ESFEFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSPGKAAALVAAGAH-----LCESVK 60
Query: 61 ELVKNLKKPRRVMMLVKAGSAVDD-FIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEA 119
+ + ++ A + V I+D + + +
Sbjct: 61 AAL---SASPATIFVLLDNHATHEVLGMPGVARALAHRTIVDYTTNAQDEGLALQGLVNQ 117
Query: 120 KGLLYVGCGVSGGEDGARYGP-SLMPGGNPAAWPALKPIFQKL 161
G YV + + + G+ A+ + + + L
Sbjct: 118 AGGHYVKGMIVAYPRNVGHRESHSIHTGDREAFEQHRALLEGL 160
|
| >1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 Length = 299 | Back alignment and structure |
|---|
Score = 76.8 bits (190), Expect = 9e-16
Identities = 35/159 (22%), Positives = 73/159 (45%), Gaps = 12/159 (7%)
Query: 7 IGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNL 66
+G IGL +MG+ + N+ G+++V +R + +A A+ A + + + +
Sbjct: 8 VGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAE-----TASTAKAIAEQC 62
Query: 67 KKPRRVMMLVKAGSAVDDFI---DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLL 123
++ ++ V + + ++ + G ++ID + + S AL+AKG+
Sbjct: 63 D---VIITMLPNSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKAKGVE 119
Query: 124 YVGCGVSGGEDGARYGP-SLMPGGNPAAWPALKPIFQKL 161
+ VSGGE A G S+M GG+ A + + + +
Sbjct: 120 MLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAM 158
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} Length = 320 | Back alignment and structure |
|---|
Score = 76.9 bits (190), Expect = 1e-15
Identities = 35/158 (22%), Positives = 66/158 (41%), Gaps = 11/158 (6%)
Query: 7 IGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNL 66
I +G MG + + + G+ + +NRT A+ S A A ++
Sbjct: 34 ITFLGTGSMGLPMARRLCEAGYALQVWNRTPARAASLAALGAT-----IHEQARAAARDA 88
Query: 67 KKPRRVMMLVKAGSAVDD--FIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLY 124
V+ +++ G+ V D F + ++ G + +D + ++ + L A G+ +
Sbjct: 89 DI---VVSMLENGAVVQDVLFAQGVAAAMKPGSLFLDMASITPREARDHAARLGALGIAH 145
Query: 125 VGCGVSGGEDGARYGP-SLMPGGNPAAWPALKPIFQKL 161
+ VSGG GA G +M GG PA + P+ +
Sbjct: 146 LDTPVSGGTVGAEQGTLVIMAGGKPADFERSLPLLKVF 183
|
| >3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} Length = 287 | Back alignment and structure |
|---|
Score = 73.3 bits (181), Expect = 1e-14
Identities = 34/159 (21%), Positives = 64/159 (40%), Gaps = 12/159 (7%)
Query: 7 IGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNL 66
G +GL +MG + N+ GF V +NR AK +A A+ A S E+
Sbjct: 4 YGFLGLGIMGGPMAANLVRAGFDVTVWNRNPAKCAPLVALGAR-----QASSPAEVCAAC 58
Query: 67 KKPRRVMMLVKAGSAVDDFI---DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLL 123
+ ++ +A + + ++ + G ID + + + A+ A+G
Sbjct: 59 DI---TIAMLADPAAAREVCFGANGVLEGIGGGRGYIDMSTVDDETSTAIGAAVTARGGR 115
Query: 124 YVGCGVSGGEDGARYGP-SLMPGGNPAAWPALKPIFQKL 161
++ VSG + A G ++ G+ + + P F L
Sbjct: 116 FLEAPVSGTKKPAEDGTLIILAAGDQSLFTDAGPAFAAL 154
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} Length = 287 | Back alignment and structure |
|---|
Score = 73.0 bits (180), Expect = 1e-14
Identities = 34/159 (21%), Positives = 68/159 (42%), Gaps = 12/159 (7%)
Query: 7 IGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNL 66
G IGL +MG + N+ G +V +NR+ K + A A+ A + E+V++
Sbjct: 4 FGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAEELAALGAE-----RAATPCEVVESC 58
Query: 67 KKPRRVMMLVKAGSAVDDFI---DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLL 123
++ +A ++ ++ + +G +D + + R A+ AKG
Sbjct: 59 P---VTFAMLADPAAAEEVCFGKHGVLEGIGEGRGYVDMSTVDPATSQRIGVAVVAKGGR 115
Query: 124 YVGCGVSGGEDGARYGP-SLMPGGNPAAWPALKPIFQKL 161
++ VSG + A G ++ G+ + P F+K+
Sbjct: 116 FLEAPVSGSKKPAEDGTLIILAAGDRNLYDEAMPGFEKM 154
|
| >3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} Length = 301 | Back alignment and structure |
|---|
Score = 73.0 bits (180), Expect = 2e-14
Identities = 38/165 (23%), Positives = 72/165 (43%), Gaps = 12/165 (7%)
Query: 1 MAAKGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLE 60
M IG IGL MG+ + +N+ G TV A++ A V + +A A+ + +
Sbjct: 1 MEKSIKIGFIGLGAMGKPMAINLLKEGVTVYAFDLMEANVAAVVAQGAQ-----ACENNQ 55
Query: 61 ELVKNLKKPRRVMMLVKAGSAVDDFI---DKLVPLLEKGDIIIDGGNSEYQDTDRRSKAL 117
++ + + V+ + ++ + G +I+D + T + +K
Sbjct: 56 KVAAASD---IIFTSLPNAGIVETVMNGPGGVLSACKAGTVIVDMSSVSPSSTLKMAKVA 112
Query: 118 EAKGLLYVGCGVSGGEDGARYGP-SLMPGGNPAAWPALKPIFQKL 161
KG+ YV VSGG GA G ++M G + A + ++P+ +
Sbjct: 113 AEKGIDYVDAPVSGGTKGAEAGTLTIMVGASEAVFEKIQPVLSVI 157
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} Length = 296 | Back alignment and structure |
|---|
Score = 71.9 bits (177), Expect = 4e-14
Identities = 31/154 (20%), Positives = 57/154 (37%), Gaps = 10/154 (6%)
Query: 7 IGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNL 66
+G IGL MG + M + V Y+ + A A S+ ++
Sbjct: 18 LGYIGLGNMGAPMATRMTEWPGGVTVYDIRIEAMTPLAEAGAT-----LADSVADVAAA- 71
Query: 67 KKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVG 126
+ + V + V + + +L + G +I ++ L+A+ + V
Sbjct: 72 ---DLIHITVLDDAQVREVVGELAGHAKPGTVIAIHSTISDTTAVELARDLKARDIHIVD 128
Query: 127 CGVSGGEDGARYGP-SLMPGGNPAAWPALKPIFQ 159
VSGG A G + M G + + +KP F+
Sbjct: 129 APVSGGAAAAARGELATMVGADREVYERIKPAFK 162
|
| >2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} Length = 316 | Back alignment and structure |
|---|
Score = 71.9 bits (177), Expect = 4e-14
Identities = 32/159 (20%), Positives = 62/159 (38%), Gaps = 12/159 (7%)
Query: 7 IGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNL 66
IG +GL +MG ++ N+ G TV +NRT K D F+ A+ + E+V
Sbjct: 33 IGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGAR-----LGRTPAEVVSTC 87
Query: 67 KKPRRVMMLVKAGSAVDDFI---DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLL 123
V A D + ++ + G +D + ++ + ++G
Sbjct: 88 DI---TFACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGR 144
Query: 124 YVGCGVSGGEDGARYGP-SLMPGGNPAAWPALKPIFQKL 161
++ VSG + + G ++ G+ + FQ +
Sbjct: 145 FLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAM 183
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} Length = 310 | Back alignment and structure |
|---|
Score = 71.9 bits (177), Expect = 4e-14
Identities = 37/159 (23%), Positives = 72/159 (45%), Gaps = 12/159 (7%)
Query: 7 IGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNL 66
+G +GL +MG+ + +N+ +GF V +NRT +K D + + A S E++K
Sbjct: 24 VGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVEHGAS-----VCESPAEVIKKC 78
Query: 67 KKPRRVMMLVKAGSAVDDFI---DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLL 123
K + ++ A + ++ + +G ID + + + + ++A+ KG
Sbjct: 79 KY---TIAMLSDPCAALSVVFDKGGVLEQICEGKGYIDMSTVDAETSLKINEAITGKGGR 135
Query: 124 YVGCGVSGGEDGARYGP-SLMPGGNPAAWPALKPIFQKL 161
+V VSG + A G ++ G+ A + P F L
Sbjct: 136 FVEGPVSGSKKPAEDGQLIILAAGDKALFEESIPAFDVL 174
|
| >2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A* Length = 296 | Back alignment and structure |
|---|
Score = 70.0 bits (172), Expect = 2e-13
Identities = 31/159 (19%), Positives = 66/159 (41%), Gaps = 12/159 (7%)
Query: 7 IGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNL 66
+G IGL MG + N+ HG+ ++ Y+ F + S ++ +
Sbjct: 3 VGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQ-----VVSSPADVAEKA 57
Query: 67 KKPRRVMMLVKAGSAVDDFI---DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLL 123
R++ ++ + + ++ ++KG ++ID + + +K +E G +
Sbjct: 58 D---RIITMLPTSINAIEAYSGANGILKKVKKGSLLIDSSTIDPAVSKELAKEVEKMGAV 114
Query: 124 YVGCGVSGGEDGARYGP-SLMPGGNPAAWPALKPIFQKL 161
++ VSGG AR G + M GG + A + + +
Sbjct: 115 FMDAPVSGGVGAARSGNLTFMVGGVEDEFAAAQELLGCM 153
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} Length = 303 | Back alignment and structure |
|---|
Score = 69.5 bits (171), Expect = 2e-13
Identities = 37/157 (23%), Positives = 62/157 (39%), Gaps = 11/157 (7%)
Query: 7 IGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNL 66
+G++GL MG + G + + + LA A G A S E +
Sbjct: 10 VGIVGLGSMGMGAARSCLRAGLSTWGADLNPQACANLLAEGACGA----AASAREFAGVV 65
Query: 67 KKPRRVMMLVKAGSAVDDFI---DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLL 123
+++LV + V + D + L++ G ++ D + AL A L
Sbjct: 66 D---ALVILVVNAAQVRQVLFGEDGVAHLMKPGSAVMVSSTISSADAQEIAAALTALNLN 122
Query: 124 YVGCGVSGGEDGARYGP-SLMPGGNPAAWPALKPIFQ 159
+ VSGG A G ++M G+ AA+ LKP+
Sbjct: 123 MLDAPVSGGAVKAAQGEMTVMASGSEAAFTRLKPVLD 159
|
| >1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium} Length = 295 | Back alignment and structure |
|---|
Score = 67.6 bits (166), Expect = 1e-12
Identities = 35/159 (22%), Positives = 63/159 (39%), Gaps = 13/159 (8%)
Query: 7 IGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNL 66
+G IGL +MG + +N+ G + + + ++ +
Sbjct: 6 LGFIGLGIMGSPMAINLARAGHQLHVTTIGPVADE---LLSLGAV---NVETARQVTEFA 59
Query: 67 KKPRRVMMLVKAGSAVDDFI---DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLL 123
+ ++V V+D + +G I+D + +T R ++ + G
Sbjct: 60 D---IIFIMVPDTPQVEDVLFGEHGCAKTSLQGKTIVDMSSISPIETKRFAQRVNEMGAD 116
Query: 124 YVGCGVSGGEDGARYGP-SLMPGGNPAAWPALKPIFQKL 161
Y+ VSGGE GAR G S+M GG + +KP+F L
Sbjct: 117 YLDAPVSGGEIGAREGTLSIMVGGEQKVFDRVKPLFDIL 155
|
| >2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A* Length = 289 | Back alignment and structure |
|---|
Score = 64.9 bits (159), Expect = 7e-12
Identities = 37/153 (24%), Positives = 61/153 (39%), Gaps = 11/153 (7%)
Query: 7 IGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNL 66
+ IGL MG + ++ T+V +NRT K E V
Sbjct: 4 VAFIGLGAMGYPMAGHLARRFPTLV-WNRTFEKALRHQEEFG------SEAVPLERVAEA 56
Query: 67 KKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVG 126
+ + + V + + L P L +G +D + E + + R ++ L KG+ Y+
Sbjct: 57 R---VIFTCLPTTREVYEVAEALYPYLREGTYWVDATSGEPEASRRLAERLREKGVTYLD 113
Query: 127 CGVSGGEDGARYGP-SLMPGGNPAAWPALKPIF 158
VSGG GA G ++M GG A ++P
Sbjct: 114 APVSGGTSGAEAGTLTVMLGGPEEAVERVRPFL 146
|
| >3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} Length = 312 | Back alignment and structure |
|---|
Score = 60.2 bits (146), Expect = 4e-10
Identities = 25/158 (15%), Positives = 48/158 (30%), Gaps = 12/158 (7%)
Query: 7 IGLIGLAVMGQNLILNMNDHG-FTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKN 65
+G IG + + G + AY+ +A+ A E + S+ E+
Sbjct: 27 LGFIGFGEAASAIASGLRQAGAIDMAAYDAASAESWRPRAEELGVS---CKASVAEVAGE 83
Query: 66 LKKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAK--GLL 123
+ LV A +A+ + + P L +G + D + +
Sbjct: 84 C---DVIFSLVTAQAAL-EVAQQAGPHLCEGALYADFTSCSPAVKRAIGDVISRHRPSAQ 139
Query: 124 YVGCGVSGGEDGARYGPSLMPGGNPAAWPALKPIFQKL 161
Y V + L+ G+ A + F
Sbjct: 140 YAAVAVMSAVKPHGHRVPLVVDGDGAR--RFQAAFTLY 175
|
| >4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti} Length = 317 | Back alignment and structure |
|---|
Score = 57.6 bits (139), Expect = 2e-09
Identities = 21/158 (13%), Positives = 40/158 (25%), Gaps = 10/158 (6%)
Query: 7 IGLIGLAVMGQNLILNMNDHGFTVV-AYNRTTAKVDSF--LANEAKGTNIIGAHSLEELV 63
I IG Q++ + + AY+ + L A + + +
Sbjct: 27 IAFIGFGEAAQSIAGGLGGRNAARLAAYDLRFNDPAASGALRARAAELGVEPLDDVAGIA 86
Query: 64 KNLKKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLL 123
V+ LV + P L + ID + + A+
Sbjct: 87 CA----DVVLSLVVGAATKA-VAASAAPHLSDEAVFIDLNSVGPDTKALAAGAIATGKGS 141
Query: 124 YVGCGVSGGEDGARYGPSLMPGGNPAAWPALKPIFQKL 161
+V V ++ G A + L
Sbjct: 142 FVEGAVMARVPPYAEKVPILVAGRRAV--EVAERLNAL 177
|
| >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} Length = 266 | Back alignment and structure |
|---|
Score = 47.8 bits (113), Expect = 2e-06
Identities = 26/170 (15%), Positives = 53/170 (31%), Gaps = 12/170 (7%)
Query: 7 IGLIGLAVMGQNLILNMNDHGFTVVA-YNRTTAKVDSFLANEAKGTNIIGAHSLEELVKN 65
I LIG + NL + GF +V Y+RT A+ L E+
Sbjct: 13 IVLIGAGNLATNLAKALYRKGFRIVQVYSRTEESAREL----AQKVEAEYTTDLAEVNPY 68
Query: 66 LKKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYV 125
++ ++ SA + + +V + +++ + + + G+ Y
Sbjct: 69 ----AKLYIVSLKDSAFAELLQGIVEGKREEALMVHT--AGSIPMNVWEGHVPHYGVFYP 122
Query: 126 GCGVSGGEDGARYG-PSLMPGGNPAAWPALKPIFQKLNPSFETSAPTPKP 174
S + P + + LK I L+ + +
Sbjct: 123 MQTFSKQREVDFKEIPFFIEASSTEDAAFLKAIASTLSNRVYDADSEQRK 172
|
| >1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6 Length = 264 | Back alignment and structure |
|---|
Score = 46.5 bits (110), Expect = 9e-06
Identities = 26/151 (17%), Positives = 43/151 (28%), Gaps = 14/151 (9%)
Query: 7 IGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNL 66
+G IG + Q L + G VV + A + EE V +
Sbjct: 3 VGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVG-----VTETSEEDVYSC 57
Query: 67 KKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVG 126
V+ V G A+ + I +D N + S +E G +V
Sbjct: 58 ---PVVISAVTPGVALGAARRAGRHV---RGIYVDINNISPETVRMASSLIEKGG--FVD 109
Query: 127 CGVSGGEDGARYG-PSLMPGGNPAAWPALKP 156
+ G + G + + L
Sbjct: 110 AAIMGSVRRKGADIRIIASGRDAEEFMKLNR 140
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 44.5 bits (104), Expect = 8e-05
Identities = 66/466 (14%), Positives = 121/466 (25%), Gaps = 161/466 (34%)
Query: 57 HSLEELVKNLKKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDI--IIDGGNSEYQDTDRRS 114
+ V N D D +L K +I II ++ T R
Sbjct: 24 VFEDAFVDNFD--------------CKDVQDMPKSILSKEEIDHIIMSKDAVSG-TLRLF 68
Query: 115 KALEAKGLLYVGCGVSGGEDGARYGPSLMPGGNPAAW------PALKPIF--QKLNPSFE 166
L +K V V Y LM + P++ ++ + +
Sbjct: 69 WTLLSKQEEMVQKFVEEVLR-INY-KFLM-----SPIKTEQRQPSMMTRMYIEQRDRLYN 121
Query: 167 TSAPTPKPQRDKKEFLENIRQALY----ASKIVSYAQGFMLMRQAAEIHGWKLNYGGIAL 222
+ K + + +RQAL A ++ I G
Sbjct: 122 DNQVFAKYNVSRLQPYLKLRQALLELRPAKNVL--------------IDG---------- 157
Query: 223 MWRGGCIIRSVFLGNIK---AAFDKNPALSNLLLDPFFKDAIH----ATQSSWRAVVSQ- 274
+ G G K A + + I +S V+
Sbjct: 158 V--LGS-------G--KTWVAL----DVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEML 202
Query: 275 SALLGIPTPAFATALAFYDGYRSKRLPANLLQAQ-RDYFGAHTYE--LLAAPGKFVHTN- 330
LL P + + D + +L + +QA+ R + YE LL V N
Sbjct: 203 QKLLYQIDPNWTSRS---DHSSNIKLRIHSIQAELRRLLKSKPYENCLL------VLLNV 253
Query: 331 WTGHGGNSIAA-KVGSEPCC------------DWVGEQGAGHFVKMVHNGIEYGDMQLIC 377
+ A + C D++ H + + H+
Sbjct: 254 QN---AKAWNAFNLS----CKILLTTRFKQVTDFLSAATTTH-ISLDHH----------- 294
Query: 378 EAYHLMTGALGMSHDEMSAVFEDWNKGELDSFLIEITKDILKFKDTDGAPLV-----EKI 432
++ ++ DE+ ++ + ++ L + P E I
Sbjct: 295 --------SMTLTPDEVKSLLLKY---------LDCRPQDLPREVLTTNPRRLSIIAESI 337
Query: 433 KDYAGQKGTGKWTAISALDYGVPVTLIGESVFSRCLSSL-FDERQK 477
+D K L ++ L+ L E +K
Sbjct: 338 RDGLATWDNWKHVNCDKL----------TTIIESSLNVLEPAEYRK 373
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 44.5 bits (104), Expect = 8e-05
Identities = 70/415 (16%), Positives = 116/415 (27%), Gaps = 141/415 (33%)
Query: 19 LIL-NMND----HGF-----TVVAYNRTT--AKVDSFLANEAKGTNIIGAHSLEELVKNL 66
L+L N+ + + F ++ TT +V FL + A T+I SL+ L
Sbjct: 248 LVLLNVQNAKAWNAFNLSCKILL----TTRFKQVTDFL-SAATTTHI----SLDHHSMTL 298
Query: 67 KKPRRVMMLVK-AGSAVDDF---IDKLVPLLEK--GDIIIDG----GNSEYQDTDRRSKA 116
+L+K D + P + I DG N ++ + D+ +
Sbjct: 299 TPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTI 358
Query: 117 LEA--KGL-------LYVGCGVSGGEDGARYGPSLMPGGN-PAA-----WPALKP----- 156
+E+ L ++ V P + P W +
Sbjct: 359 IESSLNVLEPAEYRKMFDRLSV------------FPPSAHIPTILLSLIWFDVIKSDVMV 406
Query: 157 IFQKL-NPS------FETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAE 209
+ KL S E++ P + K LEN AL+ S + Y
Sbjct: 407 VVNKLHKYSLVEKQPKESTISIPSIYLELKVKLEN-EYALHRSIVDHY-------NIPKT 458
Query: 210 IHGWKL------NYGGIALMWRGGCIIRSVFLG----NIKAAFDKNPALSNLLLD-PFFK 258
L Y +G NI+ ++ + LD F +
Sbjct: 459 FDSDDLIPPYLDQY----FYS---------HIGHHLKNIEHP-ERMTLFRMVFLDFRFLE 504
Query: 259 DAIHATQSSWRAVVSQSALLGIPTPAFATALAFYDGYRSKRLPANLLQAQRDYFGAHTYE 318
I ++W A S L L FY Y P YE
Sbjct: 505 QKIRHDSTAWNASGSILNTL--------QQLKFYKPYICDNDP--------------KYE 542
Query: 319 -LLAAPGKFVHTNWTGHGGNSIAAKVGSEPCCDWVGEQGAGHFVKMVHNGIEYGD 372
L+ A F+ N I + D + M + + +
Sbjct: 543 RLVNAILDFLPK----IEENLICS-----KYTDLL------RIALMAEDEAIFEE 582
|
| >2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* Length = 215 | Back alignment and structure |
|---|
Score = 42.3 bits (99), Expect = 1e-04
Identities = 31/167 (18%), Positives = 54/167 (32%), Gaps = 24/167 (14%)
Query: 7 IGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNL 66
+G++G ++L + GF VV +R + + A+ T A S E++
Sbjct: 31 VGILGSGDFARSLATRLVGSGFKVVVGSRNPKRTARLFPSAAQVTFQEEAVSSPEVI--- 87
Query: 67 KKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGN-SEYQDTDRRSKALEAKGLLYV 125
+ L G I++D N +E + R E L+
Sbjct: 88 -------FVAVFREHYSSLCSLSDQL--AGKILVDVSNPTEQEHLQHRESNAEYLASLFP 138
Query: 126 GCGVSGG---------EDGARYGPS--LMPGGNPAAWPALKPIFQKL 161
C V + G R G + G P A A+ + +
Sbjct: 139 TCTVVKAFNVISAWTLQAGPRDGNRQVPICGDQPEAKRAVSEMALAM 185
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 490 | |||
| 4gwg_A | 484 | 6-phosphogluconate dehydrogenase, decarboxylating; | 100.0 | |
| 2p4q_A | 497 | 6-phosphogluconate dehydrogenase, decarboxylating; | 100.0 | |
| 2zyd_A | 480 | 6-phosphogluconate dehydrogenase, decarboxylating; | 100.0 | |
| 2pgd_A | 482 | 6-phosphogluconate dehydrogenase; oxidoreductase ( | 100.0 | |
| 2iz1_A | 474 | 6-phosphogluconate dehydrogenase, decarboxylating; | 100.0 | |
| 1pgj_A | 478 | 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o | 100.0 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 100.0 | |
| 3obb_A | 300 | Probable 3-hydroxyisobutyrate dehydrogenase; struc | 100.0 | |
| 4gbj_A | 297 | 6-phosphogluconate dehydrogenase NAD-binding; stru | 100.0 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 100.0 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 100.0 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 100.0 | |
| 3pdu_A | 287 | 3-hydroxyisobutyrate dehydrogenase family protein; | 100.0 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 100.0 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 100.0 | |
| 3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 100.0 | |
| 2h78_A | 302 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 | 100.0 | |
| 4ezb_A | 317 | Uncharacterized conserved protein; structural geno | 100.0 | |
| 3qsg_A | 312 | NAD-binding phosphogluconate dehydrogenase-like P; | 100.0 | |
| 3cky_A | 301 | 2-hydroxymethyl glutarate dehydrogenase; rossmann | 100.0 | |
| 1vpd_A | 299 | Tartronate semialdehyde reductase; structural geno | 100.0 | |
| 2gf2_A | 296 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct | 100.0 | |
| 4gwg_A | 484 | 6-phosphogluconate dehydrogenase, decarboxylating; | 100.0 | |
| 1yb4_A | 295 | Tartronic semialdehyde reductase; structural genom | 100.0 | |
| 2uyy_A | 316 | N-PAC protein; long-chain dehydrogenase, cytokine; | 100.0 | |
| 2cvz_A | 289 | Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; | 99.98 | |
| 4a7p_A | 446 | UDP-glucose dehydrogenase; oxidoreductase, carbohy | 99.97 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 99.97 | |
| 3g79_A | 478 | NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; | 99.96 | |
| 1i36_A | 264 | Conserved hypothetical protein MTH1747; NADP bindi | 99.95 | |
| 3pid_A | 432 | UDP-glucose 6-dehydrogenase; rossmann fold, oxidor | 99.95 | |
| 2q3e_A | 467 | UDP-glucose 6-dehydrogenase; hexamer, structural g | 99.95 | |
| 2o3j_A | 481 | UDP-glucose 6-dehydrogenase; structural genomics, | 99.95 | |
| 2y0c_A | 478 | BCEC, UDP-glucose dehydrogenase; oxidoreductase, c | 99.95 | |
| 3ojo_A | 431 | CAP5O; rossmann fold, complex with cofactor NAD an | 99.95 | |
| 1mv8_A | 436 | GMD, GDP-mannose 6-dehydrogenase; rossman fold, do | 99.93 | |
| 1dlj_A | 402 | UDP-glucose dehydrogenase; rossmann fold, ternary | 99.93 | |
| 2p4q_A | 497 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.92 | |
| 2zyd_A | 480 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.92 | |
| 2iz1_A | 474 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.92 | |
| 3vtf_A | 444 | UDP-glucose 6-dehydrogenase; two discrete alpha/be | 99.91 | |
| 2pgd_A | 482 | 6-phosphogluconate dehydrogenase; oxidoreductase ( | 99.89 | |
| 1pgj_A | 478 | 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o | 99.89 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 99.88 | |
| 3k96_A | 356 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA | 99.88 | |
| 3dtt_A | 245 | NADP oxidoreductase; structural genomics, joint ce | 99.88 | |
| 1ks9_A | 291 | KPA reductase;, 2-dehydropantoate 2-reductase; PAN | 99.86 | |
| 1z82_A | 335 | Glycerol-3-phosphate dehydrogenase; TM0378, struct | 99.84 | |
| 1evy_A | 366 | Glycerol-3-phosphate dehydrogenase; rossmann fold, | 99.84 | |
| 2qyt_A | 317 | 2-dehydropantoate 2-reductase; APC81190, porphyrom | 99.84 | |
| 1txg_A | 335 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid | 99.84 | |
| 1yqg_A | 263 | Pyrroline-5-carboxylate reductase; structural geno | 99.84 | |
| 2izz_A | 322 | Pyrroline-5-carboxylate reductase 1; amino-acid bi | 99.83 | |
| 2ahr_A | 259 | Putative pyrroline carboxylate reductase; pyrrolin | 99.83 | |
| 1yj8_A | 375 | Glycerol-3-phosphate dehydrogenase; SGPP, structur | 99.82 | |
| 1x0v_A | 354 | GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase | 99.82 | |
| 1zej_A | 293 | HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural | 99.81 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 99.81 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 99.79 | |
| 3d1l_A | 266 | Putative NADP oxidoreductase BF3122; structural ge | 99.79 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 99.77 | |
| 1bg6_A | 359 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L | 99.75 | |
| 3gt0_A | 247 | Pyrroline-5-carboxylate reductase; structural geno | 99.75 | |
| 2rcy_A | 262 | Pyrroline carboxylate reductase; malaria, structur | 99.73 | |
| 3ktd_A | 341 | Prephenate dehydrogenase; structural genomics, joi | 99.72 | |
| 2g5c_A | 281 | Prephenate dehydrogenase; TYRA, oxidoreductase; HE | 99.72 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 99.7 | |
| 3tri_A | 280 | Pyrroline-5-carboxylate reductase; amino acid bios | 99.7 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 99.7 | |
| 3b1f_A | 290 | Putative prephenate dehydrogenase; enzyme, 4-hydro | 99.7 | |
| 3mog_A | 483 | Probable 3-hydroxybutyryl-COA dehydrogenase; struc | 99.69 | |
| 2f1k_A | 279 | Prephenate dehydrogenase; tyrosine synthesis, X-RA | 99.69 | |
| 1f0y_A | 302 | HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive | 99.68 | |
| 3ghy_A | 335 | Ketopantoate reductase protein; oxidoreductase, NA | 99.68 | |
| 3k6j_A | 460 | Protein F01G10.3, confirmed by transcript evidenc; | 99.68 | |
| 3hwr_A | 318 | 2-dehydropantoate 2-reductase; YP_299159.1, PANE/A | 99.68 | |
| 3hn2_A | 312 | 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str | 99.68 | |
| 2i76_A | 276 | Hypothetical protein; NADP, dehydrogenase, TM1727, | 99.67 | |
| 1jay_A | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma | 99.66 | |
| 3i83_A | 320 | 2-dehydropantoate 2-reductase; structural genomics | 99.65 | |
| 2yjz_A | 201 | Metalloreductase steap4; oxidoreductase, metabolic | 99.45 | |
| 4huj_A | 220 | Uncharacterized protein; PSI-biology, nysgrc, stru | 99.61 | |
| 2pv7_A | 298 | T-protein [includes: chorismate mutase (EC 5.4.99 | 99.61 | |
| 2raf_A | 209 | Putative dinucleotide-binding oxidoreductase; NP_7 | 99.59 | |
| 2vns_A | 215 | Metalloreductase steap3; metal-binding, transmembr | 99.56 | |
| 1wdk_A | 715 | Fatty oxidation complex alpha subunit; alpha2BETA2 | 99.55 | |
| 2wtb_A | 725 | MFP2, fatty acid multifunctional protein (ATMFP2); | 99.54 | |
| 3dfu_A | 232 | Uncharacterized protein from 6-phosphogluconate de | 99.53 | |
| 1zcj_A | 463 | Peroxisomal bifunctional enzyme; peroxisomal multi | 99.51 | |
| 2i99_A | 312 | MU-crystallin homolog; thyroid hormine binding pro | 99.46 | |
| 3g17_A | 294 | Similar to 2-dehydropantoate 2-reductase; structur | 99.46 | |
| 1np3_A | 338 | Ketol-acid reductoisomerase; A DEEP figure-OF-eigh | 99.45 | |
| 3ego_A | 307 | Probable 2-dehydropantoate 2-reductase; structural | 99.44 | |
| 3gvx_A | 290 | Glycerate dehydrogenase related protein; NYSGXRC, | 99.3 | |
| 3ado_A | 319 | Lambda-crystallin; L-gulonate 3-dehydrogenase, str | 99.26 | |
| 2dc1_A | 236 | L-aspartate dehydrogenase; NAD, oxidoreductase; HE | 99.25 | |
| 2gcg_A | 330 | Glyoxylate reductase/hydroxypyruvate reductase; NA | 99.24 | |
| 3c7a_A | 404 | Octopine dehydrogenase; L) stereospecific opine de | 99.24 | |
| 3evt_A | 324 | Phosphoglycerate dehydrogenase; structural genomic | 99.24 | |
| 2dbq_A | 334 | Glyoxylate reductase; D-3-phosphoglycerate dehydro | 99.23 | |
| 3gg9_A | 352 | D-3-phosphoglycerate dehydrogenase oxidoreductase; | 99.23 | |
| 3jtm_A | 351 | Formate dehydrogenase, mitochondrial; mitochondrio | 99.22 | |
| 4e5n_A | 330 | Thermostable phosphite dehydrogenase; D-2-hydroxya | 99.21 | |
| 4dgs_A | 340 | Dehydrogenase; structural genomics, PSI-biology, N | 99.2 | |
| 1wwk_A | 307 | Phosphoglycerate dehydrogenase; riken structural g | 99.2 | |
| 2w2k_A | 348 | D-mandelate dehydrogenase; 2-hydroxyacid dehydroge | 99.19 | |
| 2ekl_A | 313 | D-3-phosphoglycerate dehydrogenase; structural gen | 99.19 | |
| 1mx3_A | 347 | CTBP1, C-terminal binding protein 1; nuclear prote | 99.19 | |
| 2g76_A | 335 | 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor | 99.19 | |
| 4fgw_A | 391 | Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi | 99.18 | |
| 3hg7_A | 324 | D-isomer specific 2-hydroxyacid dehydrogenase FAM | 99.18 | |
| 2pi1_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 99.18 | |
| 1gdh_A | 320 | D-glycerate dehydrogenase; oxidoreductase(CHOH (D) | 99.18 | |
| 4hy3_A | 365 | Phosphoglycerate oxidoreductase; PSI-biology, stru | 99.17 | |
| 3ba1_A | 333 | HPPR, hydroxyphenylpyruvate reductase; two domain | 99.17 | |
| 4g2n_A | 345 | D-isomer specific 2-hydroxyacid dehydrogenase, Na; | 99.16 | |
| 2d0i_A | 333 | Dehydrogenase; structural genomics, NPPSFA, nation | 99.16 | |
| 3pp8_A | 315 | Glyoxylate/hydroxypyruvate reductase A; structural | 99.16 | |
| 1ygy_A | 529 | PGDH, D-3-phosphoglycerate dehydrogenase; oxidored | 99.14 | |
| 2nac_A | 393 | NAD-dependent formate dehydrogenase; oxidoreductas | 99.14 | |
| 2j6i_A | 364 | Formate dehydrogenase; oxidoreductase, D-specific- | 99.12 | |
| 2yq5_A | 343 | D-isomer specific 2-hydroxyacid dehydrogenase; oxi | 99.12 | |
| 1qp8_A | 303 | Formate dehydrogenase; oxidoreductase; HET: NDP; 2 | 99.11 | |
| 3oet_A | 381 | Erythronate-4-phosphate dehydrogenase; structural | 99.1 | |
| 2cuk_A | 311 | Glycerate dehydrogenase/glyoxylate reductase; stru | 99.08 | |
| 1j4a_A | 333 | D-LDH, D-lactate dehydrogenase; NAD-dependent dehy | 99.06 | |
| 2o4c_A | 380 | Erythronate-4-phosphate dehydrogenase; erythronate | 99.04 | |
| 3k5p_A | 416 | D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, | 99.03 | |
| 1sc6_A | 404 | PGDH, D-3-phosphoglycerate dehydrogenase; alloster | 99.03 | |
| 3fr7_A | 525 | Putative ketol-acid reductoisomerase (OS05G057370 | 99.02 | |
| 1dxy_A | 333 | D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc | 98.99 | |
| 1xdw_A | 331 | NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas | 98.99 | |
| 3obb_A | 300 | Probable 3-hydroxyisobutyrate dehydrogenase; struc | 98.99 | |
| 1y81_A | 138 | Conserved hypothetical protein; hyperthermophIle, | 98.96 | |
| 4gbj_A | 297 | 6-phosphogluconate dehydrogenase NAD-binding; stru | 98.94 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 98.93 | |
| 2d5c_A | 263 | AROE, shikimate 5-dehydrogenase; substrate, dimer, | 98.92 | |
| 3zwc_A | 742 | Peroxisomal bifunctional enzyme; beta oxidation pa | 98.89 | |
| 2hk9_A | 275 | Shikimate dehydrogenase; shikimate pathway, drug d | 98.87 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 98.86 | |
| 2duw_A | 145 | Putative COA-binding protein; ligand binding prote | 98.8 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 98.75 | |
| 1x7d_A | 350 | Ornithine cyclodeaminase; binds NAD+, binds L-orni | 98.72 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 98.72 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 98.71 | |
| 2ewd_A | 317 | Lactate dehydrogenase,; protein-substrate_cofactor | 98.7 | |
| 3euw_A | 344 | MYO-inositol dehydrogenase; protein structure init | 98.7 | |
| 1hyh_A | 309 | L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2 | 98.66 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 98.64 | |
| 2egg_A | 297 | AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff | 98.61 | |
| 3db2_A | 354 | Putative NADPH-dependent oxidoreductase; two domai | 98.59 | |
| 3uuw_A | 308 | Putative oxidoreductase with NAD(P)-binding rossm | 98.58 | |
| 2z2v_A | 365 | Hypothetical protein PH1688; L-lysine dehydrogenas | 98.57 | |
| 1omo_A | 322 | Alanine dehydrogenase; two-domain, beta-sandwich-d | 98.56 | |
| 4hkt_A | 331 | Inositol 2-dehydrogenase; structural genomics, nys | 98.56 | |
| 3kb6_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 98.56 | |
| 3e9m_A | 330 | Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, | 98.54 | |
| 1t2d_A | 322 | LDH-P, L-lactate dehydrogenase; ternary complex, o | 98.5 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 98.49 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 98.48 | |
| 3ezy_A | 344 | Dehydrogenase; structural genomics, unknown functi | 98.47 | |
| 1v8b_A | 479 | Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2 | 98.47 | |
| 3q2i_A | 354 | Dehydrogenase; rossmann fold, UDP-sugar binding, N | 98.47 | |
| 1a5z_A | 319 | L-lactate dehydrogenase; oxidoreductase, glycolysi | 98.46 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 98.45 | |
| 3rc1_A | 350 | Sugar 3-ketoreductase; sugar biosynthesis, TDP bin | 98.44 | |
| 1pzg_A | 331 | LDH, lactate dehydrogenase; apicomplexa, APAD, tet | 98.43 | |
| 1guz_A | 310 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 98.43 | |
| 3don_A | 277 | Shikimate dehydrogenase; alpha-beta structure, ros | 98.42 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 98.42 | |
| 2glx_A | 332 | 1,5-anhydro-D-fructose reductase; NADP(H) dependen | 98.41 | |
| 2hjr_A | 328 | Malate dehydrogenase; malaria, structural genomics | 98.41 | |
| 2ho3_A | 325 | Oxidoreductase, GFO/IDH/MOCA family; streptococcus | 98.4 | |
| 3mz0_A | 344 | Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; | 98.4 | |
| 2p2s_A | 336 | Putative oxidoreductase; YP_050235.1, structural g | 98.39 | |
| 3hdj_A | 313 | Probable ornithine cyclodeaminase; APC62486, borde | 98.38 | |
| 3d64_A | 494 | Adenosylhomocysteinase; structural genomics, ssgci | 98.38 | |
| 1lld_A | 319 | L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N | 98.38 | |
| 3h9u_A | 436 | Adenosylhomocysteinase; NAD CO-factor complex, str | 98.37 | |
| 3e18_A | 359 | Oxidoreductase; dehydrogenase, NAD-binding, struct | 98.37 | |
| 3ec7_A | 357 | Putative dehydrogenase; alpha-beta, structural gen | 98.37 | |
| 1tlt_A | 319 | Putative oxidoreductase (virulence factor MVIM HO; | 98.36 | |
| 3u62_A | 253 | Shikimate dehydrogenase; shikimate pathway, oxidor | 98.35 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 98.35 | |
| 3c1a_A | 315 | Putative oxidoreductase; ZP_00056571.1, oxidoreduc | 98.35 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 98.34 | |
| 1ydw_A | 362 | AX110P-like protein; structural genomics, protein | 98.33 | |
| 3phh_A | 269 | Shikimate dehydrogenase; shikimate pathway, helico | 98.33 | |
| 2v6b_A | 304 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ra | 98.32 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 98.32 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 98.29 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 98.29 | |
| 3pdu_A | 287 | 3-hydroxyisobutyrate dehydrogenase family protein; | 98.28 | |
| 3cea_A | 346 | MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore | 98.28 | |
| 3abi_A | 365 | Putative uncharacterized protein PH1688; L-lysine | 98.27 | |
| 1xea_A | 323 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 98.27 | |
| 3m2t_A | 359 | Probable dehydrogenase; PSI, SGXNY, structural gen | 98.27 | |
| 1leh_A | 364 | Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi | 98.26 | |
| 3kux_A | 352 | Putative oxidoreductase; oxidoreductase family, cs | 98.26 | |
| 1iuk_A | 140 | Hypothetical protein TT1466; structural genomics, | 98.26 | |
| 3ulk_A | 491 | Ketol-acid reductoisomerase; branched-chain amino | 98.26 | |
| 1ur5_A | 309 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 98.26 | |
| 3bio_A | 304 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 98.22 | |
| 3ce6_A | 494 | Adenosylhomocysteinase; protein-substrate complex, | 98.2 | |
| 3evn_A | 329 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 98.2 | |
| 3ohs_X | 334 | Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d | 98.18 | |
| 1oju_A | 294 | MDH, malate dehydrogenase; hyperthermophilic, oxid | 98.17 | |
| 4had_A | 350 | Probable oxidoreductase protein; structural genomi | 98.17 | |
| 4gqa_A | 412 | NAD binding oxidoreductase; structural genomics, P | 98.16 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 98.12 | |
| 1h6d_A | 433 | Precursor form of glucose-fructose oxidoreductase; | 98.11 | |
| 3o8q_A | 281 | Shikimate 5-dehydrogenase I alpha; structural geno | 98.11 | |
| 3gvi_A | 324 | Malate dehydrogenase; NAD, oxidoreductase, tricarb | 98.09 | |
| 3moi_A | 387 | Probable dehydrogenase; structural genomics, PSI2, | 98.08 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 98.07 | |
| 3gvp_A | 435 | Adenosylhomocysteinase 3; protein CO-factor comple | 98.07 | |
| 2d59_A | 144 | Hypothetical protein PH1109; COA binding, structur | 98.06 | |
| 3f4l_A | 345 | Putative oxidoreductase YHHX; structural genomics, | 98.06 | |
| 3e82_A | 364 | Putative oxidoreductase; NAD, GFO/IDH/MOCA family, | 98.06 | |
| 1p77_A | 272 | Shikimate 5-dehydrogenase; NADPH, oxidoreductase; | 98.06 | |
| 3u3x_A | 361 | Oxidoreductase; structural genomics, PSI-biology, | 98.05 | |
| 1obb_A | 480 | Maltase, alpha-glucosidase; glycosidase, sulfinic | 98.05 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 98.05 | |
| 2ixa_A | 444 | Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver | 98.03 | |
| 3qy9_A | 243 | DHPR, dihydrodipicolinate reductase; rossmann fold | 98.03 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 98.02 | |
| 3p7m_A | 321 | Malate dehydrogenase; putative dehydrogenase, enzy | 98.02 | |
| 3n58_A | 464 | Adenosylhomocysteinase; ssgcid, hydrolase, structu | 98.01 | |
| 3gdo_A | 358 | Uncharacterized oxidoreductase YVAA; structural ge | 98.0 | |
| 3btv_A | 438 | Galactose/lactose metabolism regulatory protein GA | 98.0 | |
| 2nvw_A | 479 | Galactose/lactose metabolism regulatory protein GA | 98.0 | |
| 1zh8_A | 340 | Oxidoreductase; TM0312, structural genomics, JO ce | 98.0 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 97.99 | |
| 1ez4_A | 318 | Lactate dehydrogenase; rossmann fold, oxidoreducta | 97.98 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 97.98 | |
| 3tl2_A | 315 | Malate dehydrogenase; center for structural genomi | 97.98 | |
| 1nyt_A | 271 | Shikimate 5-dehydrogenase; alpha/beta domains, WID | 97.97 | |
| 3pqe_A | 326 | L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas | 97.97 | |
| 1x13_A | 401 | NAD(P) transhydrogenase subunit alpha; NAD(H)-bind | 97.97 | |
| 3v5n_A | 417 | Oxidoreductase; structural genomics, PSI-biology, | 97.96 | |
| 1ldn_A | 316 | L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA | 97.95 | |
| 1ff9_A | 450 | Saccharopine reductase; lysine biosynthesis, alpha | 97.94 | |
| 3ldh_A | 330 | Lactate dehydrogenase; oxidoreductase, CHOH donor, | 97.92 | |
| 3fef_A | 450 | Putative glucosidase LPLD; gulosidase, structural | 97.92 | |
| 1npy_A | 271 | Hypothetical shikimate 5-dehydrogenase-like protei | 97.91 | |
| 2axq_A | 467 | Saccharopine dehydrogenase; rossmann fold variant, | 97.9 | |
| 1u8x_X | 472 | Maltose-6'-phosphate glucosidase; structural genom | 97.9 | |
| 4fb5_A | 393 | Probable oxidoreductase protein; PSI-biology, nysg | 97.9 | |
| 3d0o_A | 317 | L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly | 97.89 | |
| 3pwz_A | 272 | Shikimate dehydrogenase 3; alpha-beta, oxidoreduct | 97.89 | |
| 3dty_A | 398 | Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram | 97.89 | |
| 1s6y_A | 450 | 6-phospho-beta-glucosidase; hydrolase, structural | 97.88 | |
| 3fhl_A | 362 | Putative oxidoreductase; NAD-binding domain, PSI-2 | 97.88 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 97.87 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 97.87 | |
| 2i6t_A | 303 | Ubiquitin-conjugating enzyme E2-like isoform A; L- | 97.87 | |
| 4gmf_A | 372 | Yersiniabactin biosynthetic protein YBTU; rossmann | 97.86 | |
| 1gpj_A | 404 | Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro | 97.84 | |
| 3fi9_A | 343 | Malate dehydrogenase; structural genomics, oxidore | 97.83 | |
| 1f06_A | 320 | MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH | 97.81 | |
| 3nep_X | 314 | Malate dehydrogenase; halophIle, molecular adpatat | 97.8 | |
| 3jyo_A | 283 | Quinate/shikimate dehydrogenase; enzyme-cofactor c | 97.79 | |
| 2d4a_B | 308 | Malate dehydrogenase; archaea, hyperthermophIle, o | 97.79 | |
| 3i23_A | 349 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 97.77 | |
| 1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 97.76 | |
| 2h78_A | 302 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 | 97.74 | |
| 2zqz_A | 326 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ro | 97.73 | |
| 2nu8_A | 288 | Succinyl-COA ligase [ADP-forming] subunit alpha; c | 97.71 | |
| 3oqb_A | 383 | Oxidoreductase; structural genomics, protein struc | 97.7 | |
| 4h3v_A | 390 | Oxidoreductase domain protein; structural genomics | 97.69 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 97.68 | |
| 3vku_A | 326 | L-LDH, L-lactate dehydrogenase; rossmann fold, NAD | 97.68 | |
| 4aj2_A | 331 | L-lactate dehydrogenase A chain; oxidoreductase-in | 97.66 | |
| 1vpd_A | 299 | Tartronate semialdehyde reductase; structural geno | 97.66 | |
| 3mtj_A | 444 | Homoserine dehydrogenase; rossmann-fold, PSI, MCSG | 97.65 | |
| 2xxj_A | 310 | L-LDH, L-lactate dehydrogenase; oxidoreductase, hy | 97.63 | |
| 4ina_A | 405 | Saccharopine dehydrogenase; structural genomics, P | 97.62 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 97.61 | |
| 3oa2_A | 318 | WBPB; oxidoreductase, sugar biosynthesis, dehydrog | 97.59 | |
| 4f3y_A | 272 | DHPR, dihydrodipicolinate reductase; structural ge | 97.58 | |
| 3upl_A | 446 | Oxidoreductase; rossmann fold, NADPH binding; 1.50 | 97.57 | |
| 3do5_A | 327 | HOM, homoserine dehydrogenase; NP_069768.1, putati | 97.57 | |
| 4ew6_A | 330 | D-galactose-1-dehydrogenase protein; nysgrc, PSI-b | 97.57 | |
| 3o9z_A | 312 | Lipopolysaccaride biosynthesis protein WBPB; oxido | 97.54 | |
| 3fbt_A | 282 | Chorismate mutase and shikimate 5-dehydrogenase fu | 97.53 | |
| 1nvt_A | 287 | Shikimate 5'-dehydrogenase; structural genomics, P | 97.52 | |
| 1mld_A | 314 | Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D | 97.51 | |
| 3ing_A | 325 | Homoserine dehydrogenase; NP_394635.1, structural | 97.51 | |
| 3tnl_A | 315 | Shikimate dehydrogenase; structural genomics, cent | 97.5 | |
| 1c1d_A | 355 | L-phenylalanine dehydrogenase; amino acid dehydrog | 97.48 | |
| 3ond_A | 488 | Adenosylhomocysteinase; plant protein, enzyme-subs | 97.46 | |
| 1smk_A | 326 | Malate dehydrogenase, glyoxysomal; tricarboxylic c | 97.46 | |
| 3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 97.46 | |
| 1oi7_A | 288 | Succinyl-COA synthetase alpha chain; SCS, ligase, | 97.43 | |
| 4ezb_A | 317 | Uncharacterized conserved protein; structural geno | 97.42 | |
| 1lc0_A | 294 | Biliverdin reductase A; oxidoreductase, tetrapyrro | 97.41 | |
| 1nvm_B | 312 | Acetaldehyde dehydrogenase (acylating), 4-hydroxy- | 97.37 | |
| 2yv1_A | 294 | Succinyl-COA ligase [ADP-forming] subunit alpha; C | 97.36 | |
| 3cky_A | 301 | 2-hydroxymethyl glutarate dehydrogenase; rossmann | 97.34 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 97.33 | |
| 3ngx_A | 276 | Bifunctional protein fold; methylenetetrahydrofola | 97.3 | |
| 2x0j_A | 294 | Malate dehydrogenase; oxidoreductase, hyperthermop | 97.29 | |
| 3eag_A | 326 | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME | 97.29 | |
| 3c8m_A | 331 | Homoserine dehydrogenase; structural genomics, APC | 97.28 | |
| 2cvz_A | 289 | Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; | 97.25 | |
| 1b8p_A | 329 | Protein (malate dehydrogenase); oxidoreductase; 1. | 97.25 | |
| 1yb4_A | 295 | Tartronic semialdehyde reductase; structural genom | 97.24 | |
| 2czc_A | 334 | Glyceraldehyde-3-phosphate dehydrogenase; glycolys | 97.23 | |
| 3ijp_A | 288 | DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, | 97.21 | |
| 3ip3_A | 337 | Oxidoreductase, putative; structural genomics, PSI | 97.2 | |
| 2gf2_A | 296 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct | 97.19 | |
| 2yv2_A | 297 | Succinyl-COA synthetase alpha chain; COA-binding d | 97.17 | |
| 2vt3_A | 215 | REX, redox-sensing transcriptional repressor REX; | 97.14 | |
| 4a26_A | 300 | Putative C-1-tetrahydrofolate synthase, cytoplasm; | 97.13 | |
| 3t4e_A | 312 | Quinate/shikimate dehydrogenase; structural genomi | 97.12 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 97.11 | |
| 1dih_A | 273 | Dihydrodipicolinate reductase; oxidoreductase; HET | 97.1 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 97.07 | |
| 3qsg_A | 312 | NAD-binding phosphogluconate dehydrogenase-like P; | 97.05 | |
| 1edz_A | 320 | 5,10-methylenetetrahydrofolate dehydrogenase; nucl | 97.01 | |
| 1o6z_A | 303 | MDH, malate dehydrogenase; halophilic, ION-binding | 96.96 | |
| 3l07_A | 285 | Bifunctional protein fold; structural genomics, ID | 96.95 | |
| 1vl6_A | 388 | Malate oxidoreductase; TM0542, NAD-dependent malic | 96.93 | |
| 1j5p_A | 253 | Aspartate dehydrogenase; TM1643, structural genomi | 96.93 | |
| 2fp4_A | 305 | Succinyl-COA ligase [GDP-forming] alpha-chain, mit | 96.92 | |
| 1lnq_A | 336 | MTHK channels, potassium channel related protein; | 96.91 | |
| 1qyd_A | 313 | Pinoresinol-lariciresinol reductase; NADPH-depende | 96.91 | |
| 1qyc_A | 308 | Phenylcoumaran benzylic ether reductase PT1; NADPH | 96.9 | |
| 3p2o_A | 285 | Bifunctional protein fold; structural genomics, ce | 96.9 | |
| 1p9l_A | 245 | Dihydrodipicolinate reductase; oxidoreductase, lys | 96.9 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 96.87 | |
| 2ejw_A | 332 | HDH, homoserine dehydrogenase; NAD-dependent, oxid | 96.87 | |
| 2ozp_A | 345 | N-acetyl-gamma-glutamyl-phosphate reductase; amino | 96.86 | |
| 2uyy_A | 316 | N-PAC protein; long-chain dehydrogenase, cytokine; | 96.85 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 96.85 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 96.84 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 96.77 | |
| 3qvo_A | 236 | NMRA family protein; structural genomics, PSI-biol | 96.77 | |
| 4a5o_A | 286 | Bifunctional protein fold; oxidoreductase, hydrola | 96.76 | |
| 1b0a_A | 288 | Protein (fold bifunctional protein); folate, dehyd | 96.76 | |
| 1cf2_P | 337 | Protein (glyceraldehyde-3-phosphate dehydrogenase) | 96.74 | |
| 1b7g_O | 340 | Protein (glyceraldehyde 3-phosphate dehydrogenase; | 96.74 | |
| 1a4i_A | 301 | Methylenetetrahydrofolate dehydrogenase / methenyl | 96.73 | |
| 3lk7_A | 451 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; a | 96.73 | |
| 3hhp_A | 312 | Malate dehydrogenase; MDH, citric acid cycle, TCA | 96.73 | |
| 2c2x_A | 281 | Methylenetetrahydrofolate dehydrogenase- methenylt | 96.68 | |
| 3ff4_A | 122 | Uncharacterized protein; structural genomics, PSI- | 96.63 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 96.63 | |
| 2dt5_A | 211 | AT-rich DNA-binding protein; REX, NADH, NAD, rossm | 96.6 | |
| 3tum_A | 269 | Shikimate dehydrogenase family protein; rossmann-f | 96.6 | |
| 2yyy_A | 343 | Glyceraldehyde-3-phosphate dehydrogenase; glyceral | 96.59 | |
| 3dr3_A | 337 | N-acetyl-gamma-glutamyl-phosphate reductase; csgid | 96.52 | |
| 3h8v_A | 292 | Ubiquitin-like modifier-activating enzyme 5; rossm | 96.49 | |
| 3u95_A | 477 | Glycoside hydrolase, family 4; hydrolysis, cytosol | 96.46 | |
| 3keo_A | 212 | Redox-sensing transcriptional repressor REX; DNA b | 96.45 | |
| 1y7t_A | 327 | Malate dehydrogenase; NAD-dependent-MDH-NADPH comp | 96.43 | |
| 1u8f_O | 335 | GAPDH, glyceraldehyde-3-phosphate dehydrogenase, l | 96.4 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 96.27 | |
| 1xyg_A | 359 | Putative N-acetyl-gamma-glutamyl-phosphate reduct; | 96.26 | |
| 1ys4_A | 354 | Aspartate-semialdehyde dehydrogenase; oxidoreducta | 96.25 | |
| 2nqt_A | 352 | N-acetyl-gamma-glutamyl-phosphate reductase; apopr | 96.22 | |
| 2wm3_A | 299 | NMRA-like family domain containing protein 1; unkn | 96.22 | |
| 2ep5_A | 350 | 350AA long hypothetical aspartate-semialdehyde deh | 96.19 | |
| 2r6j_A | 318 | Eugenol synthase 1; phenylpropene, PIP reductase, | 96.18 | |
| 2gas_A | 307 | Isoflavone reductase; NADPH-dependent reductase, o | 96.15 | |
| 3dqp_A | 219 | Oxidoreductase YLBE; alpha-beta protein., structur | 96.12 | |
| 4hv4_A | 494 | UDP-N-acetylmuramate--L-alanine ligase; MURC, yers | 96.11 | |
| 2ph5_A | 480 | Homospermidine synthase; alpha-beta protein, struc | 96.11 | |
| 3i6i_A | 346 | Putative leucoanthocyanidin reductase 1; rossmann | 96.1 | |
| 3c1o_A | 321 | Eugenol synthase; phenylpropene, PIP reductase, sh | 96.08 | |
| 2tmg_A | 415 | Protein (glutamate dehydrogenase); metabolic role, | 96.04 | |
| 3e5r_O | 337 | PP38, glyceraldehyde-3-phosphate dehydrogenase, cy | 96.01 | |
| 4h7p_A | 345 | Malate dehydrogenase; ssgcid, structural G seattle | 95.89 | |
| 3aog_A | 440 | Glutamate dehydrogenase; NAD(H), oxidoreducta; HET | 95.88 | |
| 1zud_1 | 251 | Adenylyltransferase THIF; thiamin, thiazole, prote | 95.86 | |
| 1up7_A | 417 | 6-phospho-beta-glucosidase; hydrolase, family4 hyd | 95.77 | |
| 3aoe_E | 419 | Glutamate dehydrogenase; rossmann fold, NADH, oxid | 95.77 | |
| 1hye_A | 313 | L-lactate/malate dehydrogenase; nucleotide binding | 95.69 | |
| 1ebf_A | 358 | Homoserine dehydrogenase; dinucleotide, NAD, dimer | 95.66 | |
| 3kkj_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 95.64 | |
| 5mdh_A | 333 | Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH | 95.63 | |
| 2yfq_A | 421 | Padgh, NAD-GDH, NAD-specific glutamate dehydrogena | 95.57 | |
| 3e48_A | 289 | Putative nucleoside-diphosphate-sugar epimerase; a | 95.51 | |
| 2x4g_A | 342 | Nucleoside-diphosphate-sugar epimerase; isomerase; | 95.46 | |
| 2dvm_A | 439 | Malic enzyme, 439AA long hypothetical malate oxido | 95.36 | |
| 1xgk_A | 352 | Nitrogen metabolite repression regulator NMRA; ros | 95.35 | |
| 3ged_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 95.34 | |
| 1lu9_A | 287 | Methylene tetrahydromethanopterin dehydrogenase; a | 95.29 | |
| 2ehd_A | 234 | Oxidoreductase, oxidoreductase, short-chain dehydr | 95.28 | |
| 1vm6_A | 228 | DHPR, dihydrodipicolinate reductase; TM1520, struc | 95.26 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 95.25 | |
| 3m2p_A | 311 | UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J | 95.23 | |
| 3cps_A | 354 | Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, g | 95.23 | |
| 3hn7_A | 524 | UDP-N-acetylmuramate-L-alanine ligase; ATP-binding | 95.19 | |
| 1tt5_A | 531 | APPBP1, amyloid protein-binding protein 1; cell cy | 95.18 | |
| 4dpl_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 95.16 | |
| 4dpk_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 95.16 | |
| 2a9f_A | 398 | Putative malic enzyme ((S)-malate:NAD+ oxidoreduct | 95.14 | |
| 4gx0_A | 565 | TRKA domain protein; membrane protein, ION channel | 95.13 | |
| 1t4b_A | 367 | Aspartate-semialdehyde dehydrogenase; asadh, HOSR, | 95.1 | |
| 1vkn_A | 351 | N-acetyl-gamma-glutamyl-phosphate reductase; TM178 | 95.07 | |
| 4hb9_A | 412 | Similarities with probable monooxygenase; flavin, | 95.07 | |
| 3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 94.99 | |
| 7mdh_A | 375 | Protein (malate dehydrogenase); chloroplastic mala | 94.99 | |
| 1r0k_A | 388 | 1-deoxy-D-xylulose 5-phosphate reductoisomerase; N | 94.98 | |
| 1oc2_A | 348 | DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos | 94.94 | |
| 1xq6_A | 253 | Unknown protein; structural genomics, protein stru | 94.9 | |
| 2hjs_A | 340 | USG-1 protein homolog; aspartate-semialdehyde dehy | 94.87 | |
| 3enk_A | 341 | UDP-glucose 4-epimerase; seattle structural genomi | 94.86 | |
| 2qrj_A | 394 | Saccharopine dehydrogenase, NAD+, L-lysine- formin | 94.83 | |
| 3op4_A | 248 | 3-oxoacyl-[acyl-carrier protein] reductase; 3-keto | 94.83 | |
| 2jl1_A | 287 | Triphenylmethane reductase; oxidoreductase, biorem | 94.81 | |
| 3slg_A | 372 | PBGP3 protein; structural genomics, seattle struct | 94.72 | |
| 3dfz_A | 223 | SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase | 94.67 | |
| 3k92_A | 424 | NAD-GDH, NAD-specific glutamate dehydrogenase; ROC | 94.66 | |
| 4a7p_A | 446 | UDP-glucose dehydrogenase; oxidoreductase, carbohy | 94.6 | |
| 1c0p_A | 363 | D-amino acid oxidase; alpha-beta-alpha motif, flav | 94.59 | |
| 3lyl_A | 247 | 3-oxoacyl-(acyl-carrier-protein) reductase; alpha | 94.57 | |
| 3m1a_A | 281 | Putative dehydrogenase; short, PSI, MCSG, structur | 94.51 | |
| 4gx0_A | 565 | TRKA domain protein; membrane protein, ION channel | 94.49 | |
| 3dii_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 94.46 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 94.38 | |
| 3h5n_A | 353 | MCCB protein; ubiquitin-activating enzyme, microci | 94.38 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 94.37 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 94.34 | |
| 2gn4_A | 344 | FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann | 94.3 | |
| 2x5o_A | 439 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; A | 94.26 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 94.23 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 94.23 | |
| 2q3e_A | 467 | UDP-glucose 6-dehydrogenase; hexamer, structural g | 94.22 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 94.19 | |
| 3b1j_A | 339 | Glyceraldehyde 3-phosphate dehydrogenase (NADP+); | 94.16 | |
| 3ruf_A | 351 | WBGU; rossmann fold, UDP-hexose 4-epimerase, isome | 94.12 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 94.09 | |
| 2f00_A | 491 | UDP-N-acetylmuramate--L-alanine ligase; amide bond | 94.03 | |
| 3guy_A | 230 | Short-chain dehydrogenase/reductase SDR; structura | 94.03 | |
| 2zcu_A | 286 | Uncharacterized oxidoreductase YTFG; alpha-beta sa | 94.02 | |
| 3ak4_A | 263 | NADH-dependent quinuclidinone reductase; SDR, (R)- | 94.0 | |
| 3tfo_A | 264 | Putative 3-oxoacyl-(acyl-carrier-protein) reducta; | 94.0 | |
| 3zv4_A | 281 | CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox | 93.97 | |
| 2b0j_A | 358 | 5,10-methenyltetrahydromethanopterin hydrogenase; | 93.96 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 93.94 | |
| 3rui_A | 340 | Ubiquitin-like modifier-activating enzyme ATG7; au | 93.94 | |
| 3n74_A | 261 | 3-ketoacyl-(acyl-carrier-protein) reductase; seatt | 93.93 | |
| 1y8q_A | 346 | Ubiquitin-like 1 activating enzyme E1A; SUMO, hete | 93.91 | |
| 2d2i_A | 380 | Glyceraldehyde 3-phosphate dehydrogenase; rossmann | 93.88 | |
| 3dme_A | 369 | Conserved exported protein; structural genomics, P | 93.86 | |
| 4b4u_A | 303 | Bifunctional protein fold; oxidoreductase; HET: NA | 93.86 | |
| 1p3d_A | 475 | UDP-N-acetylmuramate--alanine ligase; alpha/beta p | 93.86 | |
| 1v9l_A | 421 | Glutamate dehydrogenase; protein-NAD complex, oxid | 93.85 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 93.83 | |
| 1i36_A | 264 | Conserved hypothetical protein MTH1747; NADP bindi | 93.81 | |
| 3sju_A | 279 | Keto reductase; short-chain dehydrogenase, oxidore | 93.81 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 93.81 | |
| 2r00_A | 336 | Aspartate-semialdehyde dehydrogenase; conformation | 93.8 | |
| 4fs3_A | 256 | Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; | 93.77 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 93.77 | |
| 2x5j_O | 339 | E4PDH, D-erythrose-4-phosphate dehydrogenase; oxid | 93.76 | |
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 93.75 | |
| 2csu_A | 457 | 457AA long hypothetical protein; structural genomi | 93.74 | |
| 3nkl_A | 141 | UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fo | 93.73 | |
| 1y56_B | 382 | Sarcosine oxidase; dehydrogenase, protein-protein | 93.72 | |
| 3hsk_A | 381 | Aspartate-semialdehyde dehydrogenase; candida albi | 93.67 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 93.65 | |
| 1uls_A | 245 | Putative 3-oxoacyl-acyl carrier protein reductase; | 93.61 | |
| 3f1l_A | 252 | Uncharacterized oxidoreductase YCIK; E. coli, NADP | 93.59 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 93.57 | |
| 1cyd_A | 244 | Carbonyl reductase; short-chain dehydrogenase, oxi | 93.57 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 93.55 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 93.55 | |
| 3ftp_A | 270 | 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid | 93.52 | |
| 3pzr_A | 370 | Aspartate-semialdehyde dehydrogenase; NADP, oxidor | 93.48 | |
| 1orr_A | 347 | CDP-tyvelose-2-epimerase; rossmann fold, short-cha | 93.48 | |
| 3d3w_A | 244 | L-xylulose reductase; uronate cycle, short-chain d | 93.44 | |
| 4id9_A | 347 | Short-chain dehydrogenase/reductase; putative dehy | 93.44 | |
| 3ai3_A | 263 | NADPH-sorbose reductase; rossmann-fold, NADPH-depe | 93.41 | |
| 3l6e_A | 235 | Oxidoreductase, short-chain dehydrogenase/reducta; | 93.41 | |
| 3nyw_A | 250 | Putative oxidoreductase; fatty acid synthesis,3-ox | 93.39 | |
| 3pwk_A | 366 | Aspartate-semialdehyde dehydrogenase; NADP binding | 93.38 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 93.34 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 93.33 | |
| 2c5a_A | 379 | GDP-mannose-3', 5'-epimerase; short chain dehydrat | 93.31 | |
| 3v8b_A | 283 | Putative dehydrogenase, possibly 3-oxoacyl-[acyl- | 93.29 | |
| 2cf5_A | 357 | Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign | 93.29 | |
| 3nrc_A | 280 | Enoyl-[acyl-carrier-protein] reductase (NADH); ros | 93.26 | |
| 3lf2_A | 265 | Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross | 93.25 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 93.24 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 93.23 | |
| 2bma_A | 470 | Glutamate dehydrogenase (NADP+); malaria, drug des | 93.23 | |
| 2oln_A | 397 | NIKD protein; flavoprotein, rossmann fold, oxidore | 93.21 | |
| 4gsl_A | 615 | Ubiquitin-like modifier-activating enzyme ATG7; ub | 93.15 | |
| 4b4o_A | 298 | Epimerase family protein SDR39U1; isomerase; HET: | 93.12 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 93.07 | |
| 1sb8_A | 352 | WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN | 93.06 | |
| 3gaf_A | 256 | 7-alpha-hydroxysteroid dehydrogenase; seattle stru | 93.04 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 93.03 | |
| 3ucx_A | 264 | Short chain dehydrogenase; ssgcid, seattle structu | 93.02 | |
| 3tjr_A | 301 | Short chain dehydrogenase; structural genomics, se | 93.01 | |
| 1yvv_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 93.01 | |
| 4dqx_A | 277 | Probable oxidoreductase protein; structural genomi | 93.01 |
| >4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-67 Score=552.18 Aligned_cols=307 Identities=75% Similarity=1.245 Sum_probs=287.3
Q ss_pred CCCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchH
Q psy9637 3 AKGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAV 82 (490)
Q Consensus 3 ~~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v 82 (490)
.+|+|||||+|.||.+||++|+++||+|++|||++++++.+.+.+..+.++..+.+++++++.|+.+|+||+|||++.++
T Consensus 3 ~~~kIgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~g~~i~~~~s~~e~v~~l~~aDvVil~Vp~~~~v 82 (484)
T 4gwg_A 3 AQADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVVGAQSLKEMVSKLKKPRRIILLVKAGQAV 82 (484)
T ss_dssp CCBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHTBCSSCEEEECSCSSHHH
T ss_pred CCCEEEEEChhHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcccCCCceeccCCHHHHHhhccCCCEEEEecCChHHH
Confidence 45799999999999999999999999999999999999999876543334556799999999888899999999998899
Q ss_pred HHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCCCccccccCCccCCCCCcchHHHHHHHHHhhC
Q psy9637 83 DDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGGEDGARYGPSLMPGGNPAAWPALKPIFQKLN 162 (490)
Q Consensus 83 ~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg~~~a~~G~~im~GG~~~a~~~v~~ll~~l~ 162 (490)
+++++++.+.+++|++|||+||+.|.++.++.+.+.++|++|+|+||+||+.++++|+++|+||+++++++++|+|+.++
T Consensus 83 ~~vl~~l~~~L~~g~iIId~st~~~~~t~~~~~~l~~~Gi~fvd~pVsGg~~gA~~G~~im~GG~~ea~~~v~pll~~ig 162 (484)
T 4gwg_A 83 DDFIEKLVPLLDTGDIIIDGGNSEYRDTTRRCRDLKAKGILFVGSGVSGGEEGARYGPSLMPGGNKEAWPHIKTIFQGIA 162 (484)
T ss_dssp HHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCCEEEEEECGGGHHHHHHHHHHHS
T ss_pred HHHHHHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHhhccccccCCccCCHHHHhcCCeeecCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CceeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhcccchhhHhHhHhHHhh
Q psy9637 163 PSFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGGCIIRSVFLGNIKAAF 242 (490)
Q Consensus 163 ~~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~~~v~~i~~~g~~~~s~~l~~i~~~~ 242 (490)
.++
T Consensus 163 ~~v----------------------------------------------------------------------------- 165 (484)
T 4gwg_A 163 AKV----------------------------------------------------------------------------- 165 (484)
T ss_dssp CBC-----------------------------------------------------------------------------
T ss_pred Ccc-----------------------------------------------------------------------------
Confidence 521
Q ss_pred ccCcccccccCChhHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhCCChhhhHHHHHHhhcccccccccC
Q psy9637 243 DKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSALLGIPTPAFATALAFYDGYRSKRLPANLLQAQRDYFGAHTYELLAA 322 (490)
Q Consensus 243 ~~~~~~~~~~~~~~f~~~l~~~~kDl~~~~~~A~~~gv~~P~~~aa~~~~~~~~~~g~~~~~~~a~rd~fgah~~~r~~~ 322 (490)
T Consensus 166 -------------------------------------------------------------------------------- 165 (484)
T 4gwg_A 166 -------------------------------------------------------------------------------- 165 (484)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCceeecccCCCCCCccccCCCCCcceeecCCCCcchhHHhhhhHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhc
Q psy9637 323 PGKFVHTNWTGHGGNSIAAKVGSEPCCDWVGEQGAGHFVKMVHNGIEYGDMQLICEAYHLMTGALGMSHDEMSAVFEDWN 402 (490)
Q Consensus 323 ~~~~~h~~w~~~~~~~~~a~~~~~~c~~~~g~~g~gh~vkmvhngiey~~m~~~~E~~~~~~~~~~~~~~~~~~~~~~w~ 402 (490)
.+++|||.|+|+.|+|||||||||+|||++||+++|+|.|+++.+|++++++.++|+.||
T Consensus 166 --------------------~~~~~~~~~~G~~Gag~~vKmv~N~i~~~~m~~iaEa~~l~~~~~Gld~~~l~~v~~~w~ 225 (484)
T 4gwg_A 166 --------------------GTGEPCCDWVGDEGAGHFVKMVHNGIEYGDMQLICEAYHLMKDVLGMAQDEMAQAFEDWN 225 (484)
T ss_dssp --------------------TTSCBSBCCCEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHT
T ss_pred --------------------cCCCceEEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHc
Confidence 135699999999999999999999999999999999999999768999999999999999
Q ss_pred cCcchhHHHHHHHHHhcccCCCCCcchhhhccccCCCcchHHHHHHHHhcCCCchhhHHHHHHHhhccCchHHHHHHhhc
Q psy9637 403 KGELDSFLIEITKDILKFKDTDGAPLVEKIKDYAGQKGTGKWTAISALDYGVPVTLIGESVFSRCLSSLFDERQKASQVL 482 (490)
Q Consensus 403 ~g~~~s~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~g~g~w~~~~a~~~~~p~~~i~~a~~~r~~s~~~~~r~~~~~~~ 482 (490)
+|+++|||+|++.++|.++|.+|.++||.|+|.++|||||+||+++|+++|||+|+|++|||+|++|++|++|++++++|
T Consensus 226 ~G~~~S~l~e~~~~~l~~~D~~g~~~ld~i~d~~~~kgtG~wt~~~A~~~gvp~p~i~~av~~R~~S~~k~~r~~a~~~l 305 (484)
T 4gwg_A 226 KTELDSFLIEITANILKFQDTDGKHLLPKIRDSAGQKGTGKWTAISALEYGVPVTLIGEAVFARCLSSLKDERIQASKKL 305 (484)
T ss_dssp TTTTCBHHHHHHHHHHHCBCTTSSBSGGGSCCCCCSSCTTHHHHHHHHHHTCCCHHHHHHHHHHHHHHCHHHHHHHHTTC
T ss_pred CCCccchHHHHHHHHHhcCCccCCccHHHHhccccCcchHHHHHHHHHHcCCCchHHHHHHHHHHHhhchHHHHHHHhhc
Confidence 99999999999999999888778899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC
Q psy9637 483 QGPN 486 (490)
Q Consensus 483 ~~~~ 486 (490)
++|.
T Consensus 306 ~~~~ 309 (484)
T 4gwg_A 306 KGPQ 309 (484)
T ss_dssp CCC-
T ss_pred CCCC
Confidence 8885
|
| >2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-57 Score=482.57 Aligned_cols=333 Identities=63% Similarity=1.105 Sum_probs=299.9
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH-cccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLA-NEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~-~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
.+|||||+|.||.+||.+|+++||+|++|||++++++.+.+ ... +.++..+.+++++++.|+++|+||+|||++.+++
T Consensus 11 ~~IgvIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~-~~gi~~~~s~~e~v~~l~~aDvVil~Vp~~~~v~ 89 (497)
T 2p4q_A 11 ADFGLIGLAVMGQNLILNAADHGFTVCAYNRTQSKVDHFLANEAK-GKSIIGATSIEDFISKLKRPRKVMLLVKAGAPVD 89 (497)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSHHHHHHHHTTTT-TSSEECCSSHHHHHHTSCSSCEEEECCCSSHHHH
T ss_pred CCEEEEeeHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHccccc-CCCeEEeCCHHHHHhcCCCCCEEEEEcCChHHHH
Confidence 58999999999999999999999999999999999999886 211 1235578899999998888999999999988999
Q ss_pred HHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCCCccccccCCccCCCCCcchHHHHHHHHHhhCC
Q psy9637 84 DFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGGEDGARYGPSLMPGGNPAAWPALKPIFQKLNP 163 (490)
Q Consensus 84 ~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg~~~a~~G~~im~GG~~~a~~~v~~ll~~l~~ 163 (490)
++++++.+.+++|++|||++|+.+.++.++.+.+.++|++|+++||+||+.++..|+++|+||+++++++++++|+.++.
T Consensus 90 ~vl~~l~~~l~~g~iIId~s~~~~~~~~~l~~~l~~~g~~~v~~pVsgg~~~a~~G~~im~gg~~e~~~~v~~ll~~~g~ 169 (497)
T 2p4q_A 90 ALINQIVPLLEKGDIIIDGGNSHFPDSNRRYEELKKKGILFVGSGVSGGEEGARYGPSLMPGGSEEAWPHIKNIFQSISA 169 (497)
T ss_dssp HHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCCEEEEEECGGGHHHHHHHHHHHSC
T ss_pred HHHHHHHHhCCCCCEEEECCCCChhHHHHHHHHHHHcCCceeCCCcccChhHhhcCCeEEecCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999988888889999999999999999999999999999999999999999985
Q ss_pred c------ee-----------------------------------------------------------------------
Q psy9637 164 S------FE----------------------------------------------------------------------- 166 (490)
Q Consensus 164 ~------~~----------------------------------------------------------------------- 166 (490)
+ +.
T Consensus 170 ~~dGe~~v~~vg~~G~g~~~Kl~~N~~~~~~~~~laEa~~l~~~~lGl~~~~~~~~~~~w~~g~~~S~l~~~~~~~l~~~ 249 (497)
T 2p4q_A 170 KSDGEPCCEWVGPAGAGHYVKMVHNGIEYGDMQLICEAYDIMKRLGGFTDKEISDVFAKWNNGVLDSFLVEITRDILKFD 249 (497)
T ss_dssp EETTEESCCCCEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTTTTCBHHHHHHHHHHTCB
T ss_pred ccCCCCceEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHhcCCccccHHHHHHHHHHhcC
Confidence 4 21
Q ss_pred ------------------------------------------------------------eCCCCC--CCCCCHHHHHHH
Q psy9637 167 ------------------------------------------------------------TSAPTP--KPQRDKKEFLEN 184 (490)
Q Consensus 167 ------------------------------------------------------------~~g~~g--~~~g~~a~~~Kl 184 (490)
+.||.+ ...+++.+++|+
T Consensus 250 d~~~~~~vd~i~D~~~~KgtG~~~~~~A~~~Gv~~P~~~~av~ar~~s~~k~~r~~~~~~~~gp~~~~~~~~~~~~~~~~ 329 (497)
T 2p4q_A 250 DVDGKPLVEKIMDTAGQKGTGKWTAINALDLGMPVTLIGEAVFARCLSALKNERIRASKVLPGPEVPKDAVKDREQFVDD 329 (497)
T ss_dssp CTTSSBGGGGSCCCCCCCSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCTTSCSCHHHHHHH
T ss_pred CCCCccHHHHHHHhhccchHHHHHHHHHHHcCCCCchHHHHHHHHHhhcchhhHHHHhhhcCCCCcccccccCHHHHHHH
Confidence 234431 111347899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhcccchhhHhHhHhHHhhccCcccccccCChhHHHHHHHH
Q psy9637 185 IRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGGCIIRSVFLGNIKAAFDKNPALSNLLLDPFFKDAIHAT 264 (490)
Q Consensus 185 l~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~~~v~~i~~~g~~~~s~~l~~i~~~~~~~~~~~~~~~~~~f~~~l~~~ 264 (490)
++|+++++++++|+|+|.++++++++++|++|+..++++||+||||||+||+.+.++|.++|.+.|++++|.|...+...
T Consensus 330 v~~al~~~~i~syaqGf~ll~~as~~~~w~l~~~~ia~iwr~GciIrs~~l~~i~~a~~~~~~l~~l~~~~~f~~~~~~~ 409 (497)
T 2p4q_A 330 LEQALYASKIISYAQGFMLIREAAATYGWKLNNPAIALMWRGGCIIRSVFLGQITKAYREEPDLENLLFNKFFADAVTKA 409 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHSSSTTCBHHHHHHHHHHHHCTTCSCGGGSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCchHHHHHHHHHHHHhcCCChhhhhcCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhCCChhhhHHHHHHhhcccccccc--------cCCCCceeecccCCCC
Q psy9637 265 QSSWRAVVSQSALLGIPTPAFATALAFYDGYRSKRLPANLLQAQRDYFGAHTYELL--------AAPGKFVHTNWTGHGG 336 (490)
Q Consensus 265 ~kDl~~~~~~A~~~gv~~P~~~aa~~~~~~~~~~g~~~~~~~a~rd~fgah~~~r~--------~~~~~~~h~~w~~~~~ 336 (490)
...+|.++..|.+.|+|+|++++++.||++++++.+|+|++|+||||||+|+|+|+ |++| +||++|++..+
T Consensus 410 ~~~~r~~v~~a~~~gvp~P~~s~aL~~~~~~~~~~~~a~liqa~Rd~FG~H~~~r~~~~~~~~~~~~~-~~h~~w~~~~~ 488 (497)
T 2p4q_A 410 QSGWRKSIALATTYGIPTPAFSTALSFYDGYRSERLPANLLQAQRDYFGAHTFRVLPECASDNLPVDK-DIHINWTGHGG 488 (497)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTCSSCTHHHHHHHHHHHSCCCBCCCGGGCCSSSCTTS-CBCCCCC----
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCchhHHHHHHHHhcCCcceeeccccccccCCCCC-eeecccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999 8775 89999987544
Q ss_pred CCc
Q psy9637 337 NSI 339 (490)
Q Consensus 337 ~~~ 339 (490)
++.
T Consensus 489 ~~~ 491 (497)
T 2p4q_A 489 NVS 491 (497)
T ss_dssp ---
T ss_pred ccc
Confidence 443
|
| >2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-57 Score=480.59 Aligned_cols=328 Identities=49% Similarity=0.883 Sum_probs=299.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
+++|||||+|.||.+||.+|+++||+|++|||++++++.+.+... +.++..+.+++++++.++++|+||+|||++.+++
T Consensus 15 ~~~IgvIGlG~MG~~lA~~La~~G~~V~v~~r~~~~~~~l~~~~~-~~gi~~~~s~~e~v~~l~~aDvVil~Vp~~~~v~ 93 (480)
T 2zyd_A 15 KQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENP-GKKLVPYYTVKEFVESLETPRRILLMVKAGAGTD 93 (480)
T ss_dssp CBSEEEECCSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHST-TSCEEECSSHHHHHHTBCSSCEEEECSCSSSHHH
T ss_pred CCeEEEEccHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHhhCC-CCCeEEeCCHHHHHhCCCCCCEEEEECCCHHHHH
Confidence 468999999999999999999999999999999999999886521 1135578899999988777999999999988999
Q ss_pred HHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCCCccccccCCccCCCCCcchHHHHHHHHHhhCC
Q psy9637 84 DFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGGEDGARYGPSLMPGGNPAAWPALKPIFQKLNP 163 (490)
Q Consensus 84 ~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg~~~a~~G~~im~GG~~~a~~~v~~ll~~l~~ 163 (490)
++++++.+.+++|++|||++|+.+.++.++.+.+.++|++|+++|++||+.+++.|+++|+||+++++++++++|+.++.
T Consensus 94 ~vl~~l~~~l~~g~iIId~s~g~~~~t~~l~~~l~~~g~~~v~~pv~gg~~~a~~g~~i~~gg~~~~~~~v~~ll~~~g~ 173 (480)
T 2zyd_A 94 AAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFNFIGTGVSGGEEGALKGPSIMPGGQKEAYELVAPILTKIAA 173 (480)
T ss_dssp HHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCCEEEEESCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHCCCCeeCCccccCHhHHhcCCeEEecCCHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999998888888889999999999999999999999999999999999999999976
Q ss_pred c-------ee----------------------------------------------------------------------
Q psy9637 164 S-------FE---------------------------------------------------------------------- 166 (490)
Q Consensus 164 ~-------~~---------------------------------------------------------------------- 166 (490)
+ +.
T Consensus 174 ~~~dGe~~v~~~g~~G~g~~~Kl~~N~~~~~~~~~laEa~~l~~~~lGl~~~~~~~l~~~w~~g~~~s~l~~~~~~~l~~ 253 (480)
T 2zyd_A 174 VAEDGEPCVTYIGADGAGHYVKMVHNGIEYGDMQLIAEAYSLLKGGLNLTNEELAQTFTEWNNGELSSYLIDITKDIFTK 253 (480)
T ss_dssp BCTTSCBSBCCCBSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTTCBHHHHHHHHHHHC
T ss_pred cccCCCceEEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhcCCCcccHHHHHHHHHHhc
Confidence 4 22
Q ss_pred -------------------------------------------------------------eCCCCCCCCCCHHHHHHHH
Q psy9637 167 -------------------------------------------------------------TSAPTPKPQRDKKEFLENI 185 (490)
Q Consensus 167 -------------------------------------------------------------~~g~~g~~~g~~a~~~Kll 185 (490)
+.||.....+++.+++|++
T Consensus 254 ~d~~~~~~v~~i~D~~~~k~tG~~~~~~A~~~gv~~Pi~~~av~ar~~s~~k~~R~~~~~~~~g~~~~~~~~~~~~~~~v 333 (480)
T 2zyd_A 254 KDEDGNYLVDVILDEAANKGTGKWTSQSALDLGEPLSLITESVFARYISSLKDQRVAASKVLSGPQAQPAGDKAEFIEKV 333 (480)
T ss_dssp BCTTSSBGGGGBCCCCCCCSCTTHHHHHHHHHTCCCHHHHHHHHHHHHHTCHHHHHHHHTTCCCCCCCCCCCHHHHHHHH
T ss_pred CCCCCcchHHHHHHHhcCchHHHHHHHHHHHcCCCCchHHHHHHHHhhhcchhhhHHhhcccCCCCCCCCCCHHHHHHHH
Confidence 1233210112568999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhcccchhhHhHhHhHHhhccCcccccccCChhHHHHHHHHH
Q psy9637 186 RQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGGCIIRSVFLGNIKAAFDKNPALSNLLLDPFFKDAIHATQ 265 (490)
Q Consensus 186 ~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~~~v~~i~~~g~~~~s~~l~~i~~~~~~~~~~~~~~~~~~f~~~l~~~~ 265 (490)
+|+++++++++|+|+|.++++++++++|++|+..++++||+||||||+||+.+.++|.++|.+.|++++|.|...+....
T Consensus 334 ~~al~~~~~~syaqGf~ll~~as~~~~w~l~~~~ia~iwr~GciIrs~~l~~i~~a~~~~~~l~~l~~~~~f~~~~~~~~ 413 (480)
T 2zyd_A 334 RRALYLGKIVSYAQGFSQLRAASEEYNWDLNYGEIAKIFRAGCIIRAQFLQKITDACAENPQIANLLLAPYFKQIADDYQ 413 (480)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHTSSSSTTCBTHHHHHHHHHHHCTTCSCGGGSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCcchHHHHHHHHHHHHhcCCChHhhhcCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhCCChhhhHHHHHHhhcccccccccCCCCceeecccC
Q psy9637 266 SSWRAVVSQSALLGIPTPAFATALAFYDGYRSKRLPANLLQAQRDYFGAHTYELLAAPGKFVHTNWTG 333 (490)
Q Consensus 266 kDl~~~~~~A~~~gv~~P~~~aa~~~~~~~~~~g~~~~~~~a~rd~fgah~~~r~~~~~~~~h~~w~~ 333 (490)
..+|.++..|.+.|+|+|++++++.||++++++.+|+|++|+||||||+|+|+|+|++| +||++|++
T Consensus 414 ~~~r~~v~~a~~~gvp~p~~s~al~~~~~~~~~~~~~~l~qa~Rd~FG~H~~~r~~~~~-~~h~~w~~ 480 (480)
T 2zyd_A 414 QALRDVVAYAVQNGIPVPTFSAAVAYYDSYRAAVLPANLIQAQRDYFGAHTYKRIDKEG-VFHTEWLD 480 (480)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTCSSCTHHHHHHHHHHHHCCCBCBSSSCS-CBCCCC--
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCchhhHHHHHHHhcCCCcceecCCCC-cccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999985 89999963
|
| >2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-56 Score=475.11 Aligned_cols=337 Identities=71% Similarity=1.198 Sum_probs=302.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
+|+|||||+|.||.+||.+|+++||+|++|||++++++.+.+....+.++..+.+++++++.++.+|+||+|||++.+++
T Consensus 2 ~m~IgvIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~g~gi~~~~~~~e~v~~l~~aDvVilaVp~~~~v~ 81 (482)
T 2pgd_A 2 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAGQAVD 81 (482)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSCTTHHHH
T ss_pred CCeEEEEChHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhccccCCCeEEeCCHHHHHhhccCCCEEEEeCCChHHHH
Confidence 36899999999999999999999999999999999999988611001234568899999976666999999999987899
Q ss_pred HHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCCCccccccCCccCCCCCcchHHHHHHHHHhhCC
Q psy9637 84 DFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGGEDGARYGPSLMPGGNPAAWPALKPIFQKLNP 163 (490)
Q Consensus 84 ~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg~~~a~~G~~im~GG~~~a~~~v~~ll~~l~~ 163 (490)
++++++.+.+++|++|||++|+.+.++.++.+.+.++|++|+++|++|++.++..|+++|+||+++++++++++|+.++.
T Consensus 82 ~vl~~l~~~l~~g~iII~~s~~~~~~~~~l~~~l~~~g~~~v~~pv~g~~~~a~~g~~i~~gg~~e~~~~v~~ll~~~g~ 161 (482)
T 2pgd_A 82 NFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILFVGSGVSGGEDGARYGPSLMPGGNKEAWPHIKAIFQGIAA 161 (482)
T ss_dssp HHHHHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCCEEEEEECTTTHHHHHHHHHHHSC
T ss_pred HHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEeCCCCCCChhhhccCCeEEeCCCHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999988888888888889999999999999999999988999999999999999999875
Q ss_pred ce-------e----------------------------------------------------------------------
Q psy9637 164 SF-------E---------------------------------------------------------------------- 166 (490)
Q Consensus 164 ~~-------~---------------------------------------------------------------------- 166 (490)
++ .
T Consensus 162 ~v~d~~~~~~~~g~~g~g~~~Kl~~N~~~~~~~~~i~Ea~~l~~~~~G~~~~~~~~~~~~w~~g~~~S~l~~~~~~~l~~ 241 (482)
T 2pgd_A 162 KVGTGEPCCDWVGDDGAGHFVKMVHNGIEYGDMQLICEAYHLMKDVLGLGHKEMAKAFEEWNKTELDSFLIEITASILKF 241 (482)
T ss_dssp BCTTSCBSCCCCEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTTTTTCBHHHHHHHHHHHC
T ss_pred hccCCCcceEEECCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHhcCCCcCchHHHHHhHHhhc
Confidence 42 1
Q ss_pred -------------------------------------------------------------eCCCC-CCCCCCHHHHHHH
Q psy9637 167 -------------------------------------------------------------TSAPT-PKPQRDKKEFLEN 184 (490)
Q Consensus 167 -------------------------------------------------------------~~g~~-g~~~g~~a~~~Kl 184 (490)
+.||. +...+++.+++|+
T Consensus 242 ~d~~~~~~ld~i~d~~~~k~t~~~~~~~A~~~Gv~~P~i~~av~~~~~s~~k~~r~~~~~~~~g~~~~~~~~~~~~~~~~ 321 (482)
T 2pgd_A 242 QDADGKHLLPKIRDSAGQKGTGKWTAISALEYGVPVTLIGEAVFARCLSSLKDERIQASKKLKGPQNIPFEGDKKSFLED 321 (482)
T ss_dssp BCTTSSBSGGGSCCCCCCCSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCCSCHHHHHHH
T ss_pred cCCCCCeeecccccccccccHHHHHHHHHHHcCCCcchHHHHHHHHhhhhhhhHHHHHhhhcCCCCccccCcCHHHHHHH
Confidence 23443 2222456899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhcccchhhHhHhHhHHhhccCcccccccCChhHHHHHHHH
Q psy9637 185 IRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGGCIIRSVFLGNIKAAFDKNPALSNLLLDPFFKDAIHAT 264 (490)
Q Consensus 185 l~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~~~v~~i~~~g~~~~s~~l~~i~~~~~~~~~~~~~~~~~~f~~~l~~~ 264 (490)
++|+++++++++|+|+|.++++++++++|++|+..++++||+||||||+||+.+.++|.++|.+.|++++|.|...+...
T Consensus 322 v~~al~~~~~~syaqGf~ll~~as~~~~w~l~~~~ia~~wr~Gciirs~~l~~i~~a~~~~~~l~~l~~~~~~~~~~~~~ 401 (482)
T 2pgd_A 322 IRKALYASKIISYAQGFMLLRQAATEFGWTLNYGGIALMWRGGCIIRSVFLGKIKDAFDRNPGLQNLLLDDFFKSAVENC 401 (482)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHTTSSSTTCBTHHHHHHHHHHHCTTCSCGGGSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCcchHHHHHHHHHHHHhcCCChhhhhcCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhCCChhhhHHHHHHhhcccccccccCCCCceeecccCCCCCCcc
Q psy9637 265 QSSWRAVVSQSALLGIPTPAFATALAFYDGYRSKRLPANLLQAQRDYFGAHTYELLAAPGKFVHTNWTGHGGNSIA 340 (490)
Q Consensus 265 ~kDl~~~~~~A~~~gv~~P~~~aa~~~~~~~~~~g~~~~~~~a~rd~fgah~~~r~~~~~~~~h~~w~~~~~~~~~ 340 (490)
+..+|.++..|.+.|+|+|++++++.||+.+++..+|+|++|+||||||+|+|+|+|++|++||++|++..+++.+
T Consensus 402 ~~~~r~~v~~a~~~g~p~p~~s~al~~~~~~~~~~~~~~l~qa~rd~fG~h~~~r~~~~~~~~h~~w~~~~~~~~~ 477 (482)
T 2pgd_A 402 QDSWRRAISTGVQAGIPMPCFTTALSFYDGYRHAMLPANLIQAQRDYFGAHTYELLAKPGQFIHTNWTGHGGSVSS 477 (482)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHCSSCTHHHHHHHHHHHHCCCBCCSSSTTCCBCCCCSCSCC----
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCcchhHHHHHHhhcCCceeeecCCCCCceecccCCCCCcccc
Confidence 9999999999999999999999999999999999999999999999999999999999987999999875444433
|
| >2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-55 Score=468.55 Aligned_cols=331 Identities=50% Similarity=0.881 Sum_probs=299.3
Q ss_pred CCCCCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCc
Q psy9637 1 MAAKGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGS 80 (490)
Q Consensus 1 M~~~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~ 80 (490)
|+ +++|||||+|.||.+||.+|+++||+|++|||++++++.+.+... +.++..+.+++++++.++++|+||+|||++.
T Consensus 3 m~-~~~IgvIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~-~~gi~~~~s~~e~v~~l~~aDvVilavp~~~ 80 (474)
T 2iz1_A 3 MA-QANFGVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEVFKEHQ-DKNLVFTKTLEEFVGSLEKPRRIMLMVQAGA 80 (474)
T ss_dssp CT-TBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTT-TSCEEECSSHHHHHHTBCSSCEEEECCCTTH
T ss_pred CC-CCcEEEEeeHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHhCc-CCCeEEeCCHHHHHhhccCCCEEEEEccCch
Confidence 53 468999999999999999999999999999999999999876421 1235578899999987777999999999988
Q ss_pred hHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCCCccccccCCccCCCCCcchHHHHHHHHHh
Q psy9637 81 AVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGGEDGARYGPSLMPGGNPAAWPALKPIFQK 160 (490)
Q Consensus 81 ~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg~~~a~~G~~im~GG~~~a~~~v~~ll~~ 160 (490)
+++++++++.+.+++|++|||++|+.+.++.++.+.+.++|++|+++|++|++.+++.|+++|+||+++++++++++|+.
T Consensus 81 ~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~l~~~l~~~g~~~v~~pv~gg~~~a~~g~~i~~gg~~~~~~~v~~ll~~ 160 (474)
T 2iz1_A 81 ATDATIKSLLPLLDIGDILIDGGNTHFPDTMRRNAELADSGINFIGTGVSGGEKGALLGPSMMPGGQKEAYDLVAPIFEQ 160 (474)
T ss_dssp HHHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHTTTSSCEEEEEEECSHHHHHHHCCCEEEEECHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHCCCeEECCCCCCChhhhccCCeEEecCCHHHHHHHHHHHHH
Confidence 89999999999999999999999999988888888887789999999999999999999989999999999999999999
Q ss_pred hCCc--------ee------------------------------------------------------------------
Q psy9637 161 LNPS--------FE------------------------------------------------------------------ 166 (490)
Q Consensus 161 l~~~--------~~------------------------------------------------------------------ 166 (490)
++.+ +.
T Consensus 161 ~g~~~~~dge~~~~~~g~~g~g~~~Kl~~N~~~~~~~~~laEa~~l~~~~~Gl~~~~~~~l~~~w~~g~~~s~l~~~~~~ 240 (474)
T 2iz1_A 161 IAAKAPQDGKPCVAYMGANGAGHYVKMVHNGIEYGDMQLIAESYDLLKRILGLSNAEIQAIFEEWNEGELDSYLIEITKE 240 (474)
T ss_dssp HSCBCTTTCCBSBCCCBSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTTTTTCBHHHHHHHH
T ss_pred HhcccccCCCceEEEECCccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhcCCCccccHHHhhhh
Confidence 8754 11
Q ss_pred ------------------------------------------------------------------eCCCCCCCCCCHHH
Q psy9637 167 ------------------------------------------------------------------TSAPTPKPQRDKKE 180 (490)
Q Consensus 167 ------------------------------------------------------------------~~g~~g~~~g~~a~ 180 (490)
+.||.....+++.+
T Consensus 241 ~l~~~d~~~g~~~vd~i~D~~~~k~tG~~~~~~A~~~gv~~P~~~~av~ar~~s~~k~~r~~~~~~~~g~~~~~~~~~~~ 320 (474)
T 2iz1_A 241 VLKRKDDEGEGYIVDKILDKAGNKGTGKWTSESALDLGVPLPLITESVFARYISTYKDERVKASKVLSGPALDFSGDKKE 320 (474)
T ss_dssp HTTCBCSSSSSBGGGGBCSCCCCCSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCSCHHH
T ss_pred HhhcCCCCCChhHHHHHHHhhcccchHHHHHHHHHHcCCCCchHHHHHHHHHhhhhhhhhHHhhhccCCCCCcCCCCHHH
Confidence 12332101125689
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhcccchhhHhHhHhHHhhccCcccccccCChhHHHH
Q psy9637 181 FLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGGCIIRSVFLGNIKAAFDKNPALSNLLLDPFFKDA 260 (490)
Q Consensus 181 ~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~~~v~~i~~~g~~~~s~~l~~i~~~~~~~~~~~~~~~~~~f~~~ 260 (490)
++|+++|+++++++++|+|+|.++++++++++|++|+..++++||+||||||+||+.+.++|.++|.+.|++++|.|...
T Consensus 321 ~~~~v~~al~~~~~~~yaqGf~ll~~a~~~~~~~l~~~~ia~~wr~Gciirs~~l~~i~~a~~~~~~l~~l~~~~~~~~~ 400 (474)
T 2iz1_A 321 VIEKIRKALYFSKIMSYAQGFAQLRKASEEFDWDLPYGTIAQIWRAGCIIRAEFLQNITDAFDKDSELENLLLDDYFVDI 400 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHTSSSCTTCBTTHHHHHHHHHHCTTCCCGGGSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhccchHHHHHHHHHHHHHhcCCChhhhhcCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhCCChhhhHHHHHHhhcccccccccCCCCceeecccCC
Q psy9637 261 IHATQSSWRAVVSQSALLGIPTPAFATALAFYDGYRSKRLPANLLQAQRDYFGAHTYELLAAPGKFVHTNWTGH 334 (490)
Q Consensus 261 l~~~~kDl~~~~~~A~~~gv~~P~~~aa~~~~~~~~~~g~~~~~~~a~rd~fgah~~~r~~~~~~~~h~~w~~~ 334 (490)
+......+|.++..|.+.|+|+|++++++.||++++++.+|+|++|+||||||+|+|+|+|++| +||++|+++
T Consensus 401 ~~~~~~~~r~~v~~a~~~~~p~p~~s~al~~~~~~~~~~~~~~l~qa~rd~fg~h~~~r~~~~~-~~h~~w~~~ 473 (474)
T 2iz1_A 401 TKRYQEAVRDVVSLAVQAGTPIPTFTSAISYYDSYRSENLPANLIQAQRDYFGAHTYERTDKAG-IFHYDWYTE 473 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTCSSCTHHHHHHHHHHHHCCCBCBSSSSS-CBCCCCC--
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCchhhHHHHHHHhcCCccceecCCCC-eeeccCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999985 899999863
|
| >1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-53 Score=452.43 Aligned_cols=326 Identities=34% Similarity=0.661 Sum_probs=292.8
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHc-ccC--CCCeeccCCHHHHHhhCCCCcEEEEecCCCch
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLAN-EAK--GTNIIGAHSLEELVKNLKKPRRVMMLVKAGSA 81 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~-g~~--~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~ 81 (490)
|+|||||+|.||.+||.+|+++||+|++|||++++++.+.+. +.. +.++..+.+++++++.++++|+||+|||++.+
T Consensus 2 MkIgVIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~g~~~~~~~i~~~~~~~e~v~~l~~aDvVilaVp~~~~ 81 (478)
T 1pgj_A 2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILVQAGAA 81 (478)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECCCCSHH
T ss_pred CEEEEEChHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCCCCCCCeEEECCHHHHHhcccCCCEEEEecCChHH
Confidence 589999999999999999999999999999999999998865 310 11255788999999877779999999999878
Q ss_pred HHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCCCccccccCCccCCCCCcchHHHHHHHHHhh
Q psy9637 82 VDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGGEDGARYGPSLMPGGNPAAWPALKPIFQKL 161 (490)
Q Consensus 82 v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg~~~a~~G~~im~GG~~~a~~~v~~ll~~l 161 (490)
++++++++.+.+++|++|||++|+.+.++.++.+.+.+.|++|+++|++|++.+++.|+++|+||+++++++++++|+.+
T Consensus 82 v~~vl~~l~~~l~~g~iIId~sng~~~~~~~l~~~l~~~g~~~v~~pv~gg~~~a~~g~~i~~gg~~~~~~~v~~ll~~~ 161 (478)
T 1pgj_A 82 TDSTIEQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGMGISGGEEGARKGPAFFPGGTLSVWEEIRPIVEAA 161 (478)
T ss_dssp HHHHHHHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEEEEEEEESHHHHHHHCCEEEEEECHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCCCCEEEECCCCChHHHHHHHHHHHHCCCeEEEeeccCCHHHHhcCCeEeccCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999888888888888899999999999999999999889999999999999999999
Q ss_pred CCc-------ee----------------------------------------------e---------------------
Q psy9637 162 NPS-------FE----------------------------------------------T--------------------- 167 (490)
Q Consensus 162 ~~~-------~~----------------------------------------------~--------------------- 167 (490)
+.+ +. .
T Consensus 162 g~~~~dg~~~v~~~g~~G~g~~~Kl~~N~~~~~~~~~i~Ea~~l~~~~G~~~~~~~~l~~~w~~~g~~~s~l~~~~~~~l 241 (478)
T 1pgj_A 162 AAKADDGRPCVTMNGSGGAGSCVKMYHNSGEYAILQIWGEVFDILRAMGLNNDEVAAVLEDWKSKNFLKSYMLDISIAAA 241 (478)
T ss_dssp SCBCTTSCBSCCCCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSTTCBHHHHHHHHHH
T ss_pred cccccCCCeeEEEeCCchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhccCCCcCchHHHhhchhh
Confidence 753 11 0
Q ss_pred ----------------------------------------------------------------CCCC--CCCC-CCH--
Q psy9637 168 ----------------------------------------------------------------SAPT--PKPQ-RDK-- 178 (490)
Q Consensus 168 ----------------------------------------------------------------~g~~--g~~~-g~~-- 178 (490)
.||. .... +++
T Consensus 242 ~~~d~~G~~~ld~i~D~~~~kgtg~~~~~~A~~~Gv~~Pi~~~av~~r~ls~~~~~r~~~~~~l~~~~~~~~~~~~~~~~ 321 (478)
T 1pgj_A 242 RAKDKDGSYLTEHVMDRIGSKGTGLWSAQEALEIGVPAPSLNMAVVSRQFTMYKTERQANASNAPGITQSPGYTLKNKSP 321 (478)
T ss_dssp HCBCTTSSBGGGGBCCCCCCCSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHTHHHHHHHHHHSTTTTCCCCCCCSCCST
T ss_pred hcCCCCChhHHHHHHHHhcCccHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCCHHHHHHHhcCCCCcccccccccchh
Confidence 0110 0000 233
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhcccchhhHhHhHhHHhhccCcccccccCChhH
Q psy9637 179 -KEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGGCIIRSVFLGNIKAAFDKNPALSNLLLDPFF 257 (490)
Q Consensus 179 -a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~~~v~~i~~~g~~~~s~~l~~i~~~~~~~~~~~~~~~~~~f 257 (490)
..+++.++++++++++++|+|+|.+.++++++++|+||...++++||+||||||.||+.|..+|.++|.+.|++ |.|
T Consensus 322 ~~~~~~~~~~al~~~~~~~yaqg~~~~~~a~~~~~w~l~~~~~a~~wr~gciir~~~l~~i~~a~~~~~~~~~l~--~~~ 399 (478)
T 1pgj_A 322 SGPEIKQLYDSVCIAIISCYAQMFQCLREMDKVHNFGLNLPATIATFRAGCILQGYLLKPMTEAFEKNPNISNLM--CAF 399 (478)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHTTSSSSTTCBTTHHHHHHHHHHCTTCSCTT--GGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCCceeeHHHHHHHHHHHhcCCChhhHH--HHH
Confidence 57788999999999999999999999999999999999999999999999999999999999999999999988 999
Q ss_pred HHHHHHHHHHHHHHHHH-HHHcCCCchHHHHHHHHHHHHHhCCCh-hhhHHHHHHhhcccccccccCCCCceeecccC
Q psy9637 258 KDAIHATQSSWRAVVSQ-SALLGIPTPAFATALAFYDGYRSKRLP-ANLLQAQRDYFGAHTYELLAAPGKFVHTNWTG 333 (490)
Q Consensus 258 ~~~l~~~~kDl~~~~~~-A~~~gv~~P~~~aa~~~~~~~~~~g~~-~~~~~a~rd~fgah~~~r~~~~~~~~h~~w~~ 333 (490)
...+...+.+||.++.. |...|+|+|.+++++.||+.++++.+| +|++|+||||||+|||+|+|++| +||++|++
T Consensus 400 ~~~~~~~~~~~r~~v~~~~~~~g~~~p~~~~~l~y~d~~~~~~l~~~~l~qaqrd~fg~h~~~~~~~~~-~~h~~w~~ 476 (478)
T 1pgj_A 400 QTEIRAGLQNYRDMVALITSKLEVSIPVLSASLNYVTAMFTPTLKYGQLVSLQRDVFGRHGYERVDKDG-RESFQWPE 476 (478)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHTCSCCTHHHHHHHHHHHHHCCCEEBSSSSS-EECCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhccccCCcchhHHHHHHhccCceeeecCCCC-ceecCCCC
Confidence 99999999999999999 999999999999999999999999999 99999999999999999999985 89999975
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-51 Score=421.06 Aligned_cols=304 Identities=35% Similarity=0.615 Sum_probs=258.3
Q ss_pred CCCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchH
Q psy9637 3 AKGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAV 82 (490)
Q Consensus 3 ~~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v 82 (490)
.+|+|||||+|.||.+||.+|+++||+|++|||++++++.+.+.+. ..+.+++++++.++.+|+||+|||++ .+
T Consensus 21 ~~mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~~~~~~l~~~g~-----~~~~s~~e~~~~a~~~DvVi~~vp~~-~v 94 (358)
T 4e21_A 21 QSMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNVNAVQALEREGI-----AGARSIEEFCAKLVKPRVVWLMVPAA-VV 94 (358)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTTC-----BCCSSHHHHHHHSCSSCEEEECSCGG-GH
T ss_pred cCCEEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHCCC-----EEeCCHHHHHhcCCCCCEEEEeCCHH-HH
Confidence 3479999999999999999999999999999999999999887654 36789999999855569999999998 99
Q ss_pred HHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCCCccccccCCccCCCCCcchHHHHHHHHHhhC
Q psy9637 83 DDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGGEDGARYGPSLMPGGNPAAWPALKPIFQKLN 162 (490)
Q Consensus 83 ~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg~~~a~~G~~im~GG~~~a~~~v~~ll~~l~ 162 (490)
+++++++.+.+++|++|||+||+.|.++.++.+.+.++|++|+|+||+||+.+++.|+++|+||+++++++++|+|+.++
T Consensus 95 ~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~vdapVsGg~~~a~~G~~im~GG~~~a~~~~~~ll~~lg 174 (358)
T 4e21_A 95 DSMLQRMTPLLAANDIVIDGGNSHYQDDIRRADQMRAQGITYVDVGTSGGIFGLERGYCLMIGGEKQAVERLDPVFRTLA 174 (358)
T ss_dssp HHHHHHHGGGCCTTCEEEECSSCCHHHHHHHHHHHHTTTCEEEEEEEECGGGHHHHCCEEEEESCHHHHHHTHHHHHHHS
T ss_pred HHHHHHHHhhCCCCCEEEeCCCCChHHHHHHHHHHHHCCCEEEeCCCCCCHHHHhcCCeeeecCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CceeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhcccchhhHhHhHhHHhh
Q psy9637 163 PSFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGGCIIRSVFLGNIKAAF 242 (490)
Q Consensus 163 ~~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~~~v~~i~~~g~~~~s~~l~~i~~~~ 242 (490)
.++-. ++.
T Consensus 175 ~~~~~-~~~----------------------------------------------------------------------- 182 (358)
T 4e21_A 175 PGIGA-APR----------------------------------------------------------------------- 182 (358)
T ss_dssp CCGGG-SCC-----------------------------------------------------------------------
T ss_pred ccccc-Ccc-----------------------------------------------------------------------
Confidence 63100 000
Q ss_pred ccCcccccccCChhHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhCCChhhhHHHHHHhhcccccccccC
Q psy9637 243 DKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSALLGIPTPAFATALAFYDGYRSKRLPANLLQAQRDYFGAHTYELLAA 322 (490)
Q Consensus 243 ~~~~~~~~~~~~~~f~~~l~~~~kDl~~~~~~A~~~gv~~P~~~aa~~~~~~~~~~g~~~~~~~a~rd~fgah~~~r~~~ 322 (490)
.+ + |
T Consensus 183 --~~---------~--------------------------------------------------------------~--- 186 (358)
T 4e21_A 183 --TP---------G--------------------------------------------------------------R--- 186 (358)
T ss_dssp --CT---------T--------------------------------------------------------------G---
T ss_pred --cc---------c--------------------------------------------------------------c---
Confidence 00 0 0
Q ss_pred CCCceeecccCCCCCCccccCCCCCcceeecCCCCcchhHHhhhhHHHHHHHHHHHHHHHHHhh-cCCC-----------
Q psy9637 323 PGKFVHTNWTGHGGNSIAAKVGSEPCCDWVGEQGAGHFVKMVHNGIEYGDMQLICEAYHLMTGA-LGMS----------- 390 (490)
Q Consensus 323 ~~~~~h~~w~~~~~~~~~a~~~~~~c~~~~g~~g~gh~vkmvhngiey~~m~~~~E~~~~~~~~-~~~~----------- 390 (490)
++ | ....+.|+.|+|+.|+||++||+||.+.+++|++++|++.++++. ++.+
T Consensus 187 ~~------~----------~~~~~~~~~~~G~~G~g~~~Kl~~n~l~~~~i~~~aE~~~la~~a~~~~~~~~~~~~~~~~ 250 (358)
T 4e21_A 187 EK------R----------EGTAELGYLHCGPSGAGHFVKMVHNGIEYGLMAAYAEGLNILHHANAGKEGQGADAETAPL 250 (358)
T ss_dssp GG------C----------CSSGGGTEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCC-------------
T ss_pred cc------c----------ccccccceEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccc
Confidence 00 0 001135789999999999999999999999999999999999972 2111
Q ss_pred --------hHHHHHHHHHhccCc-chhHHHHHHHHHhcccCCCCCcchhhhccccCCCcchHHHHHHHHhcCCCchhhHH
Q psy9637 391 --------HDEMSAVFEDWNKGE-LDSFLIEITKDILKFKDTDGAPLVEKIKDYAGQKGTGKWTAISALDYGVPVTLIGE 461 (490)
Q Consensus 391 --------~~~~~~~~~~w~~g~-~~s~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~g~g~w~~~~a~~~~~p~~~i~~ 461 (490)
..|+++|++.|+.|+ ++|||+++++++|++ | |.++.+.+.+.++|||||++++|.++|||+|++++
T Consensus 251 ~~~~~~~~~~d~~~i~~~~~~g~~~~s~~l~~~~~~~~~-~----p~~~~~~~~~~d~g~~r~~~~~A~~~gvp~p~~~~ 325 (358)
T 4e21_A 251 RNPDFYRYDLDLADITEVWRRGSVISSWLLDLSATALLD-S----PDLQEFQGRVSDSGEGRWTVAAAIDEGVPAHVLSS 325 (358)
T ss_dssp -CGGGCCCCCCHHHHHHHHTTTSTTCBHHHHHHHHHHHH-C----TTCTTC--CCCCCSHHHHHHHHHHHHTCCCHHHHH
T ss_pred ccchhcccCCCHHHHHHHHhCccHHHHHHHHHHHHHHhh-C----CChHHHHHHHHhcCcHHHHHHHHHHcCCChHHHHH
Confidence 249999999999999 899999999999985 4 55777889999999999999999999999999999
Q ss_pred HHHHHhhccCchHHHHHHhhcC
Q psy9637 462 SVFSRCLSSLFDERQKASQVLQ 483 (490)
Q Consensus 462 a~~~r~~s~~~~~r~~~~~~~~ 483 (490)
||+.|+.| +.+|..+++.++
T Consensus 326 al~~~~~s--~~~~~~~~~l~~ 345 (358)
T 4e21_A 326 ALYERFSS--RGEDDFANRLLS 345 (358)
T ss_dssp HHHHHHHH--TTTTHHHHHHHH
T ss_pred HHHHHHHH--CCCcccHHHHHH
Confidence 99999999 455666665554
|
| >3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-51 Score=408.99 Aligned_cols=288 Identities=18% Similarity=0.243 Sum_probs=261.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
|+||||||+|.||.+||+||+++||+|++|||++++++.+.+.|+. .++|+.|+++. +|+||+|||++++++
T Consensus 3 M~kIgfIGlG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~-----~a~s~~e~~~~---~dvv~~~l~~~~~v~ 74 (300)
T 3obb_A 3 MKQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGAS-----AARSARDAVQG---ADVVISMLPASQHVE 74 (300)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCE-----ECSSHHHHHTT---CSEEEECCSCHHHHH
T ss_pred cCEEEEeeehHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHcCCE-----EcCCHHHHHhc---CCceeecCCchHHHH
Confidence 5689999999999999999999999999999999999999988764 78999999988 899999999999999
Q ss_pred HHHHh---hcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCCCccccccCC-ccCCCCCcchHHHHHHHHH
Q psy9637 84 DFIDK---LVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGGEDGARYGP-SLMPGGNPAAWPALKPIFQ 159 (490)
Q Consensus 84 ~vl~~---l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg~~~a~~G~-~im~GG~~~a~~~v~~ll~ 159 (490)
+|+.+ +++.+.+|++|||+||+.|.+++++.+.++++|++|+|+|||||+.+|++|+ ++|+||++++|++++|+|+
T Consensus 75 ~V~~~~~g~~~~~~~g~iiId~sT~~p~~~~~~a~~~~~~G~~~lDaPVsGg~~~A~~G~L~imvGG~~~~~~~~~p~l~ 154 (300)
T 3obb_A 75 GLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERGLAMLDAPVSGGTAGAAAGTLTFMVGGDAEALEKARPLFE 154 (300)
T ss_dssp HHHHSSSSSTTSCCC-CEEEECSCCCHHHHHHHHHHHHTTTCEEEECCEESCHHHHHHTCEEEEEESCHHHHHHHHHHHH
T ss_pred HHHhchhhhhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEecCCCCCHHHHHhCCEEEEEeCCHHHHHHHHHHHH
Confidence 99954 7888999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred hhCCceeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhcccchhhHhHhHhH
Q psy9637 160 KLNPSFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGGCIIRSVFLGNIK 239 (490)
Q Consensus 160 ~l~~~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~~~v~~i~~~g~~~~s~~l~~i~ 239 (490)
.++.+++|+|+.| .++.+|+++|.+.++++++++|++.+++++ |+|++.+.++++.++ .+|+.++...
T Consensus 155 ~~g~~i~~~G~~G-----~g~~~Kl~~N~l~~~~~~a~aEa~~la~~~------Gld~~~~~~vl~~~~-~~s~~~~~~~ 222 (300)
T 3obb_A 155 AMGRNIFHAGPDG-----AGQVAKVCNNQLLAVLMIGTAEAMALGVAN------GLEAKVLAEIMRRSS-GGNWALEVYN 222 (300)
T ss_dssp HHEEEEEEEESTT-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------TCCHHHHHHHHHTST-TCCHHHHHCC
T ss_pred HhCCCEEEeCCcc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------CCCHHHHHHHHHhCc-ccchHHHhhc
Confidence 9999999999986 689999999999999999999999999999 999999999999887 5677776532
Q ss_pred Hhhcc-CcccccccCChhHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhCCChhhhHHHHHHhhc
Q psy9637 240 AAFDK-NPALSNLLLDPFFKDAIHATQSSWRAVVSQSALLGIPTPAFATALAFYDGYRSKRLPANLLQAQRDYFG 313 (490)
Q Consensus 240 ~~~~~-~~~~~~~~~~~~f~~~l~~~~kDl~~~~~~A~~~gv~~P~~~aa~~~~~~~~~~g~~~~~~~a~rd~fg 313 (490)
+.... ...+.+..+.+.| .++.+.||+++++++|++.|+|+|+.+.+.++|+.+.+.|+++.|.++++++|-
T Consensus 223 p~~~~~~~~~~~~~~~~~f--~~~l~~KDl~l~~~~A~~~g~~~p~~~~a~~~~~~a~~~G~g~~D~sal~~~~e 295 (300)
T 3obb_A 223 PWPGVMENAPASRDYSGGF--MAQLMAKDLGLAQEAAQASASSTPMGSLALSLYRLLLKQGYAERDFSVVQKLFD 295 (300)
T ss_dssp CSTTTSTTSGGGGTTCSSS--BHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHTTCTTSBGGGGHHHHC
T ss_pred cccchhhhccccccCCccc--hHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhCCCCCcCHHHHHHHHH
Confidence 21111 1123455677777 678899999999999999999999999999999999999999999999998874
|
| >4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-48 Score=387.86 Aligned_cols=280 Identities=15% Similarity=0.163 Sum_probs=247.7
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
.||||||+|.||.+||+||+++||+|++|||++++++++.+.|. ..++|+.|+++. +|+||+|||++.++++
T Consensus 6 ~kIgfIGLG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~G~-----~~~~s~~e~~~~---~dvvi~~l~~~~~~~~ 77 (297)
T 4gbj_A 6 EKIAFLGLGNLGTPIAEILLEAGYELVVWNRTASKAEPLTKLGA-----TVVENAIDAITP---GGIVFSVLADDAAVEE 77 (297)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEC-------CTTTTTTC-----EECSSGGGGCCT---TCEEEECCSSHHHHHH
T ss_pred CcEEEEecHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCC-----eEeCCHHHHHhc---CCceeeeccchhhHHH
Confidence 47999999999999999999999999999999999998887665 368999999887 8999999999888888
Q ss_pred HH-HhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCCCccccccCC-ccCCCCCcchHHHHHHHHHhhC
Q psy9637 85 FI-DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGGEDGARYGP-SLMPGGNPAAWPALKPIFQKLN 162 (490)
Q Consensus 85 vl-~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg~~~a~~G~-~im~GG~~~a~~~v~~ll~~l~ 162 (490)
++ ..+.+.+.++++|||+||+.|.+++++.+.+.++|++|+|+||+||+.+++.|+ ++|+||+++++++++|+|+.++
T Consensus 78 v~~~~~~~~~~~~~iiid~sT~~p~~~~~~~~~~~~~g~~~ldapVsGg~~~a~~g~l~im~gG~~~~~~~~~~~l~~~g 157 (297)
T 4gbj_A 78 LFSMELVEKLGKDGVHVSMSTISPETSRQLAQVHEWYGAHYVGAPIFARPEAVRAKVGNICLSGNAGAKERIKPIVENFV 157 (297)
T ss_dssp HSCHHHHHHHCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEECCHHHHHHTCCEEEEEECHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhhcCCCeEEEECCCCChHHHHHHHHHHHhcCCceecCCcCCCccccccccceeecccchhHHHHHHHHHHHhh
Confidence 76 567888999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred CceeeCCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhcccchhhHhHhHhHHh
Q psy9637 163 PSFETSAP-TPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGGCIIRSVFLGNIKAA 241 (490)
Q Consensus 163 ~~~~~~g~-~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~~~v~~i~~~g~~~~s~~l~~i~~~ 241 (490)
.+++++|+ .| .++.+|+++|.+.++++++++|++.+++++ |+|+++++++++.++ .+|++++...
T Consensus 158 ~~i~~~g~~~G-----~g~~~Kl~~N~~~~~~~~~~aEa~~la~~~------Gld~~~~~~~l~~~~-~~s~~~~~~~-- 223 (297)
T 4gbj_A 158 KGVFDFGDDPG-----AANVIKLAGNFMIACSLEMMGEAFTMAEKN------GISRQSIYEMLTSTL-FAAPIFQNYG-- 223 (297)
T ss_dssp SEEEECCSCTT-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------TCCHHHHHHHHHTTT-TCSHHHHHHH--
T ss_pred CCeEEecCCcc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCHHHHHHHHHhhc-ccCchhhccC--
Confidence 99999885 55 689999999999999999999999999999 999999999999876 5788877643
Q ss_pred hccCcccccccCCh-hHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhCCChhhhHHHHHHhh
Q psy9637 242 FDKNPALSNLLLDP-FFKDAIHATQSSWRAVVSQSALLGIPTPAFATALAFYDGYRSKRLPANLLQAQRDYF 312 (490)
Q Consensus 242 ~~~~~~~~~~~~~~-~f~~~l~~~~kDl~~~~~~A~~~gv~~P~~~aa~~~~~~~~~~g~~~~~~~a~rd~f 312 (490)
+.+.+..|.| +| .++.+.||++++++.|++.|+|+|+.+.+.++|+.+.++|+++.|.+++.+.+
T Consensus 224 ----~~~~~~~~~p~~f--~~~l~~KDl~l~~~~A~~~g~~~p~~~~~~~~~~~a~~~G~g~~D~sal~~~~ 289 (297)
T 4gbj_A 224 ----KLVASNTYEPVAF--RFPLGLKDINLTLQTASDVNAPMPFADIIRNRFISGLAKGRENLDWGALALGA 289 (297)
T ss_dssp ----HHHHHTCCCSCSS--BHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCTTSBGGGGGHHH
T ss_pred ----ccccCCCCCCccc--hhHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHhCCCCCCCHHHHHHHH
Confidence 3445566665 56 57789999999999999999999999999999999999999998888776654
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-40 Score=334.68 Aligned_cols=283 Identities=19% Similarity=0.277 Sum_probs=255.8
Q ss_pred CCCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchH
Q psy9637 3 AKGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAV 82 (490)
Q Consensus 3 ~~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v 82 (490)
.||+|||||+|.||.+||.+|+++||+|++|||++++++.+.+.+. ..++++.++++. +|+||+|||++.++
T Consensus 20 ~m~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~-----~~~~~~~~~~~~---aDvvi~~vp~~~~~ 91 (310)
T 3doj_A 20 HMMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVEHGA-----SVCESPAEVIKK---CKYTIAMLSDPCAA 91 (310)
T ss_dssp CSCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHHTTC-----EECSSHHHHHHH---CSEEEECCSSHHHH
T ss_pred cCCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCC-----eEcCCHHHHHHh---CCEEEEEcCCHHHH
Confidence 4689999999999999999999999999999999999999887654 368899999988 89999999998889
Q ss_pred HHHH---HhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCCCccccccCC-ccCCCCCcchHHHHHHHH
Q psy9637 83 DDFI---DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGGEDGARYGP-SLMPGGNPAAWPALKPIF 158 (490)
Q Consensus 83 ~~vl---~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg~~~a~~G~-~im~GG~~~a~~~v~~ll 158 (490)
++++ +++.+.+.++++|||+||+.|..+.+..+.+.++|++|+|+|++|++..+..|+ .+|+||+++++++++++|
T Consensus 92 ~~v~~~~~~l~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~~v~~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~ll 171 (310)
T 3doj_A 92 LSVVFDKGGVLEQICEGKGYIDMSTVDAETSLKINEAITGKGGRFVEGPVSGSKKPAEDGQLIILAAGDKALFEESIPAF 171 (310)
T ss_dssp HHHHHSTTCGGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEECCHHHHHHTCEEEEEEECHHHHHHHHHHH
T ss_pred HHHHhCchhhhhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEeCCCCCChhHHhcCCeEEEEcCCHHHHHHHHHHH
Confidence 9999 888899999999999999999998888888889999999999999999999999 899999999999999999
Q ss_pred HhhCCceeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhcccchhhHhHhHh
Q psy9637 159 QKLNPSFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGGCIIRSVFLGNI 238 (490)
Q Consensus 159 ~~l~~~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~~~v~~i~~~g~~~~s~~l~~i 238 (490)
+.++.+++++|+.| .++++|+++|++.+.++++++|++.++++. |+|++++.++++.+. ..|++++..
T Consensus 172 ~~~g~~~~~~g~~g-----~a~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~------G~d~~~~~~~~~~~~-~~s~~~~~~ 239 (310)
T 3doj_A 172 DVLGKRSFYLGQVG-----NGAKMKLIVNMIMGSMMNAFSEGLVLADKS------GLSSDTLLDILDLGA-MTNPMFKGK 239 (310)
T ss_dssp HHHEEEEEECSSTT-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------TSCHHHHHHHHHHST-TCCHHHHHH
T ss_pred HHhCCCEEEeCCcC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCHHHHHHHHHhcc-cccHHHHHH
Confidence 99999999998875 688999999999999999999999999999 999999999998764 455555543
Q ss_pred HHhhccCcccccccCChhHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhCCChhhhHHHHHHhhc
Q psy9637 239 KAAFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSALLGIPTPAFATALAFYDGYRSKRLPANLLQAQRDYFG 313 (490)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~f~~~l~~~~kDl~~~~~~A~~~gv~~P~~~aa~~~~~~~~~~g~~~~~~~a~rd~fg 313 (490)
. +.+.+..|.+.| .+.++.||++.++++|++.|+++|+++++.++|+.+.+.|+++.|.+++.+++.
T Consensus 240 ~------~~~~~~~~~~~f--~~~~~~KDl~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~ 306 (310)
T 3doj_A 240 G------PSMNKSSYPPAF--PLKHQQKDMRLALALGDENAVSMPVAAAANEAFKKARSLGLGDLDFSAVIEAVK 306 (310)
T ss_dssp H------HHHHTTCCCCSS--BHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCTTSBGGGGHHHHH
T ss_pred h------hhhhcCCCCCCc--cHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHcCCCCcCHHHHHHHHH
Confidence 2 334556667776 688899999999999999999999999999999999999999999888877764
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-40 Score=334.12 Aligned_cols=281 Identities=17% Similarity=0.244 Sum_probs=255.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
+|+|||||+|.||..||.+|+++||+|++|||++++++.+.+.+. ..+++++++++. +|+||+|||++..++
T Consensus 31 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~l~~~g~-----~~~~~~~e~~~~---aDvVi~~vp~~~~~~ 102 (320)
T 4dll_A 31 ARKITFLGTGSMGLPMARRLCEAGYALQVWNRTPARAASLAALGA-----TIHEQARAAARD---ADIVVSMLENGAVVQ 102 (320)
T ss_dssp CSEEEEECCTTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTTC-----EEESSHHHHHTT---CSEEEECCSSHHHHH
T ss_pred CCEEEEECccHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHCCC-----EeeCCHHHHHhc---CCEEEEECCCHHHHH
Confidence 469999999999999999999999999999999999999887653 468899999887 899999999988899
Q ss_pred HHHH--hhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCCCccccccCC-ccCCCCCcchHHHHHHHHHh
Q psy9637 84 DFID--KLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGGEDGARYGP-SLMPGGNPAAWPALKPIFQK 160 (490)
Q Consensus 84 ~vl~--~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg~~~a~~G~-~im~GG~~~a~~~v~~ll~~ 160 (490)
.++. ++.+.+.++++|||+||+.|.++++..+.+.++|++|+|+|++|++.++..|+ .+|+||+++++++++++|+.
T Consensus 103 ~v~~~~~~~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~ll~~ 182 (320)
T 4dll_A 103 DVLFAQGVAAAMKPGSLFLDMASITPREARDHAARLGALGIAHLDTPVSGGTVGAEQGTLVIMAGGKPADFERSLPLLKV 182 (320)
T ss_dssp HHHTTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEECHHHHHHHTCEEEEEESCHHHHHHHHHHHHH
T ss_pred HHHcchhHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCEEEeCCCcCCHhHHhcCCeeEEeCCCHHHHHHHHHHHHh
Confidence 9987 88888999999999999999999999898999999999999999999999999 99999999999999999999
Q ss_pred hCCceeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhcccchhhHhHhHhHH
Q psy9637 161 LNPSFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGGCIIRSVFLGNIKA 240 (490)
Q Consensus 161 l~~~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~~~v~~i~~~g~~~~s~~l~~i~~ 240 (490)
+ .+++++|+.| .++++|+++|++.+..+++++|++.++++. |+|++++.++++.+. ..|++++...
T Consensus 183 ~-~~~~~~g~~g-----~a~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~------G~d~~~~~~~~~~~~-~~s~~~~~~~- 248 (320)
T 4dll_A 183 F-GRATHVGPHG-----SGQLTKLANQMIVGITIGAVAEALLFATKG------GADMAKVKEAITGGF-ADSRVLQLHG- 248 (320)
T ss_dssp H-EEEEEEESTT-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------SCCHHHHHHHHTTST-TCBHHHHTHH-
T ss_pred c-CCEEEeCCcc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCHHHHHHHHHccc-ccCHHHHHhh-
Confidence 9 8888888875 689999999999999999999999999999 999999999998875 5677777643
Q ss_pred hhccCcccccccCChhHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhCCChhhhHHHHHHhhc
Q psy9637 241 AFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSALLGIPTPAFATALAFYDGYRSKRLPANLLQAQRDYFG 313 (490)
Q Consensus 241 ~~~~~~~~~~~~~~~~f~~~l~~~~kDl~~~~~~A~~~gv~~P~~~aa~~~~~~~~~~g~~~~~~~a~rd~fg 313 (490)
+.+.+..|.++| .+.++.||++.++++|++.|+++|+++++.++|+.+.+.|+++.+.+++.+++.
T Consensus 249 -----~~~l~~~~~~gf--~~~~~~KDl~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~ 314 (320)
T 4dll_A 249 -----QRMVERDFAPRA--RLSIQLKDMRNALATAQEIGFDAPITGLFEQLYAEGVEHGLTDLDQSGLFVELA 314 (320)
T ss_dssp -----HHHHTTCCCCSS--BHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTTTTTSBGGGHHHHHH
T ss_pred -----hhhccCCCCCcc--cHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCCcCHHHHHHHHH
Confidence 345556677776 578899999999999999999999999999999999999999998888877764
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-40 Score=331.13 Aligned_cols=282 Identities=20% Similarity=0.231 Sum_probs=252.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeec-cCCHHHHHhhCCCCcEEEEecCCCchH
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIG-AHSLEELVKNLKKPRRVMMLVKAGSAV 82 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~-~~s~~e~v~~l~~~dvIil~vp~~~~v 82 (490)
+|||||||+|.||.+||.+|+++||+|++|||++++++.+.+.+.. . +++++++++. +|+||+|||++..+
T Consensus 7 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~-----~~~~~~~e~~~~---aDvvi~~vp~~~~~ 78 (303)
T 3g0o_A 7 DFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNPQACANLLAEGAC-----GAAASAREFAGV---VDALVILVVNAAQV 78 (303)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCS-----EEESSSTTTTTT---CSEEEECCSSHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCc-----cccCCHHHHHhc---CCEEEEECCCHHHH
Confidence 4789999999999999999999999999999999999999887643 3 6788888776 89999999998789
Q ss_pred HHHH---HhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCCCccccccCC-ccCCCCCcchHHHHHHHH
Q psy9637 83 DDFI---DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGGEDGARYGP-SLMPGGNPAAWPALKPIF 158 (490)
Q Consensus 83 ~~vl---~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg~~~a~~G~-~im~GG~~~a~~~v~~ll 158 (490)
+.++ +++.+.++++++|||+||+.+..+.+..+.+.++|++|+|+|++|++..+..|+ .+|+||+++++++++++|
T Consensus 79 ~~v~~~~~~l~~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll 158 (303)
T 3g0o_A 79 RQVLFGEDGVAHLMKPGSAVMVSSTISSADAQEIAAALTALNLNMLDAPVSGGAVKAAQGEMTVMASGSEAAFTRLKPVL 158 (303)
T ss_dssp HHHHC--CCCGGGSCTTCEEEECSCCCHHHHHHHHHHHHTTTCEEEECCEESCHHHHHTTCEEEEEECCHHHHHHHHHHH
T ss_pred HHHHhChhhHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCeEEeCCCCCChhhhhcCCeEEEeCCCHHHHHHHHHHH
Confidence 9998 788899999999999999999888888888888999999999999999999999 999999999999999999
Q ss_pred HhhCCceeeCCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhcccchhhHhHhH
Q psy9637 159 QKLNPSFETSAP-TPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGGCIIRSVFLGN 237 (490)
Q Consensus 159 ~~l~~~~~~~g~-~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~~~v~~i~~~g~~~~s~~l~~ 237 (490)
+.++.+++++|+ .| .++++|+++|++.+.++++++|++.++++. |+|++++.++++.+. ..|++++.
T Consensus 159 ~~~g~~~~~~~~~~g-----~a~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~------G~d~~~~~~~~~~~~-~~s~~~~~ 226 (303)
T 3g0o_A 159 DAVASNVYRISDTPG-----AGSTVKIIHQLLAGVHIAAAAEAMALAARA------GIPLDVMYDVVTHAA-GNSWMFEN 226 (303)
T ss_dssp HHHEEEEEEEESSTT-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------TCCHHHHHHHHTTST-TCCHHHHH
T ss_pred HHHCCCEEECCCCCc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCHHHHHHHHHhcc-cCCHHHHh
Confidence 999999999887 65 689999999999999999999999999999 999999999998864 56777665
Q ss_pred hHHhhccCcccccccCChhHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhCCChhhhHHHHHHhhc
Q psy9637 238 IKAAFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSALLGIPTPAFATALAFYDGYRSKRLPANLLQAQRDYFG 313 (490)
Q Consensus 238 i~~~~~~~~~~~~~~~~~~f~~~l~~~~kDl~~~~~~A~~~gv~~P~~~aa~~~~~~~~~~g~~~~~~~a~rd~fg 313 (490)
.. +.+.+..+.+.| .+..+.||++.+++.|++.|+++|+++++.++|+.+.+.|+++.|.+++.+++.
T Consensus 227 ~~------~~~~~~~~~~~~--~~~~~~kD~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~ 294 (303)
T 3g0o_A 227 RM------QHVVDGDYTPRS--AVDIFVKDLGLVADTAKALRFPLPLASTALNMFTSASNAGYGKEDDSAVIKIFS 294 (303)
T ss_dssp HH------HHHHTTCCCCSS--BHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTTTTSBGGGGGGGC-
T ss_pred hh------HHHhcCCCCCCC--chHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCccCHHHHHHHHH
Confidence 42 233445566665 678899999999999999999999999999999999999999999998877654
|
| >3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-40 Score=327.18 Aligned_cols=282 Identities=19% Similarity=0.243 Sum_probs=254.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
||||||||+|.||..||.+|+++||+|++|||++++.+.+.+.+. ..+++++++++. +|+||+|||++.+++
T Consensus 1 M~~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~-----~~~~~~~~~~~~---advvi~~v~~~~~~~ 72 (287)
T 3pdu_A 1 MTTYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPAKCAPLVALGA-----RQASSPAEVCAA---CDITIAMLADPAAAR 72 (287)
T ss_dssp CCCEEEECCSTTHHHHHHHHHHHTCCEEEECSSGGGGHHHHHHTC-----EECSCHHHHHHH---CSEEEECCSSHHHHH
T ss_pred CCeEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCC-----eecCCHHHHHHc---CCEEEEEcCCHHHHH
Confidence 368999999999999999999999999999999999999887654 367899999988 899999999977899
Q ss_pred HHH---HhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCCCccccccCC-ccCCCCCcchHHHHHHHHH
Q psy9637 84 DFI---DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGGEDGARYGP-SLMPGGNPAAWPALKPIFQ 159 (490)
Q Consensus 84 ~vl---~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg~~~a~~G~-~im~GG~~~a~~~v~~ll~ 159 (490)
+++ +++.+.+.++++|||+||+.+..+.+..+.+.++|++|+|+|++|++..+..|+ .+|+||+++++++++++|+
T Consensus 73 ~v~~~~~~l~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~ 152 (287)
T 3pdu_A 73 EVCFGANGVLEGIGGGRGYIDMSTVDDETSTAIGAAVTARGGRFLEAPVSGTKKPAEDGTLIILAAGDQSLFTDAGPAFA 152 (287)
T ss_dssp HHHHSTTCGGGTCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEECCHHHHHHTCEEEEEEECHHHHHHTHHHHH
T ss_pred HHHcCchhhhhcccCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEECCccCCHHHHhcCCEEEEEeCCHHHHHHHHHHHH
Confidence 999 888999999999999999999988888888888999999999999999999999 9999999999999999999
Q ss_pred hhCCceeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhcccchhhHhHhHhH
Q psy9637 160 KLNPSFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGGCIIRSVFLGNIK 239 (490)
Q Consensus 160 ~l~~~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~~~v~~i~~~g~~~~s~~l~~i~ 239 (490)
.++.+++++|+.| .++++|+++|++.+.++.+++|++.++++. |+|++++.++++.+. ..|++++...
T Consensus 153 ~~g~~~~~~g~~g-----~~~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~------G~~~~~~~~~~~~~~-~~s~~~~~~~ 220 (287)
T 3pdu_A 153 ALGKKCLHLGEVG-----QGARMKLVVNMIMGQMMTALGEGMALGRNC------GLDGGQLLEVLDAGA-MANPMFKGKG 220 (287)
T ss_dssp HHEEEEEECSSTT-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------TCCHHHHHHHHHHST-TCCHHHHHHH
T ss_pred HhCCCEEEcCCCC-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCHHHHHHHHHhcc-ccChHHHhhc
Confidence 9999999998875 689999999999999999999999999999 999999999998875 5666666542
Q ss_pred HhhccCcccccccCChhHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhCCChhhhHHHHHHhhc
Q psy9637 240 AAFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSALLGIPTPAFATALAFYDGYRSKRLPANLLQAQRDYFG 313 (490)
Q Consensus 240 ~~~~~~~~~~~~~~~~~f~~~l~~~~kDl~~~~~~A~~~gv~~P~~~aa~~~~~~~~~~g~~~~~~~a~rd~fg 313 (490)
+.+.+..+.+.| .+..+.||++.+++.|++.|+++|+++++.++|+.+.+.|+++.|.+++.+++.
T Consensus 221 ------~~~~~~~~~~~~--~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~~~~d~~~~~~~~~ 286 (287)
T 3pdu_A 221 ------QMLLSGEFPTSF--PLKHMQKDLRLAVELGDRLGQPLHGAATANESFKRARAAGHADEDFAAVFRVLE 286 (287)
T ss_dssp ------HHHHHTCCCCSS--BHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHTTCTTSBGGGGHHHHC
T ss_pred ------cccccCCCCCCC--cHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCcCCHHHHHHHHh
Confidence 334455666766 578899999999999999999999999999999999999999999888877653
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-39 Score=324.79 Aligned_cols=280 Identities=19% Similarity=0.274 Sum_probs=254.2
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
|||||||+|.||.+||.+|+++||+|++|||++++.+.+.+.+. ..+++++++++. +|+||+|||++..+++
T Consensus 2 ~~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~-----~~~~~~~~~~~~---aDvvi~~vp~~~~~~~ 73 (287)
T 3pef_A 2 QKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAEELAALGA-----ERAATPCEVVES---CPVTFAMLADPAAAEE 73 (287)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHHTTC-----EECSSHHHHHHH---CSEEEECCSSHHHHHH
T ss_pred CEEEEEeecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCC-----eecCCHHHHHhc---CCEEEEEcCCHHHHHH
Confidence 68999999999999999999999999999999999999887654 468899999988 8999999998778999
Q ss_pred HH---HhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCCCccccccCC-ccCCCCCcchHHHHHHHHHh
Q psy9637 85 FI---DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGGEDGARYGP-SLMPGGNPAAWPALKPIFQK 160 (490)
Q Consensus 85 vl---~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg~~~a~~G~-~im~GG~~~a~~~v~~ll~~ 160 (490)
++ +++.+.++++++|||+||+.+.++.+..+.+.++|++|+|+|++|++..+..|+ .+|+||+++++++++++|+.
T Consensus 74 v~~~~~~l~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~ 153 (287)
T 3pef_A 74 VCFGKHGVLEGIGEGRGYVDMSTVDPATSQRIGVAVVAKGGRFLEAPVSGSKKPAEDGTLIILAAGDRNLYDEAMPGFEK 153 (287)
T ss_dssp HHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEECCHHHHHHTCEEEEEEECHHHHHHHHHHHHH
T ss_pred HHcCcchHhhcCCCCCEEEeCCCCCHHHHHHHHHHHHHhCCEEEECCCcCCHHHHhcCCEEEEEeCCHHHHHHHHHHHHH
Confidence 99 888899999999999999999998888888889999999999999999999999 89999999999999999999
Q ss_pred hCCceeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhcccchhhHhHhHhHH
Q psy9637 161 LNPSFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGGCIIRSVFLGNIKA 240 (490)
Q Consensus 161 l~~~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~~~v~~i~~~g~~~~s~~l~~i~~ 240 (490)
++.+++++|+.| .++++|+++|++.+.++.+++|++.++++. |+|++++.+++..+. ..|++++...
T Consensus 154 ~g~~~~~~g~~g-----~~~~~Kl~~N~~~~~~~~~~~E~~~l~~~~------G~d~~~~~~~~~~~~-~~s~~~~~~~- 220 (287)
T 3pef_A 154 MGKKIIHLGDVG-----KGAEMKLVVNMVMGGMMACFCEGLALGEKA------GLATDAILDVIGAGA-MANPMFALKG- 220 (287)
T ss_dssp HEEEEEECSSTT-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------TCCHHHHHHHHHHST-TCCHHHHHHH-
T ss_pred hCCCeEEeCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCHHHHHHHHHhcc-cccHHHHHHh-
Confidence 999999998875 689999999999999999999999999999 999999999998875 5666666543
Q ss_pred hhccCcccccccCChhHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhCCChhhhHHHHHHhh
Q psy9637 241 AFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSALLGIPTPAFATALAFYDGYRSKRLPANLLQAQRDYF 312 (490)
Q Consensus 241 ~~~~~~~~~~~~~~~~f~~~l~~~~kDl~~~~~~A~~~gv~~P~~~aa~~~~~~~~~~g~~~~~~~a~rd~f 312 (490)
+.+.+..|.+.| .+..+.||++.+++.|++.|+++|+++.+.++|+.+.+.|+++.+.+++.+++
T Consensus 221 -----~~~~~~~~~~~~--~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~ 285 (287)
T 3pef_A 221 -----GLIRDRNFAPAF--PLKHMQKDLRLAVALGDRVGQPLVASAAANELFKGARAAGFGDEDFSAIFKTY 285 (287)
T ss_dssp -----HHHHTTCCCCSS--BHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHTTCTTSBGGGGGGGG
T ss_pred -----hhhhcCCCCCCC--chHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHcCCCccCHHHHHHHH
Confidence 234455666766 58889999999999999999999999999999999999999999988877665
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-39 Score=324.14 Aligned_cols=273 Identities=15% Similarity=0.165 Sum_probs=238.2
Q ss_pred CCCCCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCc
Q psy9637 1 MAAKGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGS 80 (490)
Q Consensus 1 M~~~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~ 80 (490)
|+.+|||||||+|.||.+||.+|+++||+|++|||++++++.+.+.+. ..+++++++++ +|+||+|||++.
T Consensus 12 M~~~~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~g~-----~~~~~~~~~~~----aDvvi~~vp~~~ 82 (296)
T 3qha_A 12 TTEQLKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIEAMTPLAEAGA-----TLADSVADVAA----ADLIHITVLDDA 82 (296)
T ss_dssp ---CCCEEEECCSTTHHHHHHHHTTSTTCEEEECSSTTTSHHHHHTTC-----EECSSHHHHTT----SSEEEECCSSHH
T ss_pred ccCCCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCC-----EEcCCHHHHHh----CCEEEEECCChH
Confidence 333568999999999999999999999999999999999999887654 46789998876 799999999888
Q ss_pred hHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCCCccccccCC-ccCCCCCcchHHHHHHHHH
Q psy9637 81 AVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGGEDGARYGP-SLMPGGNPAAWPALKPIFQ 159 (490)
Q Consensus 81 ~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg~~~a~~G~-~im~GG~~~a~~~v~~ll~ 159 (490)
+++++++++.+.++++++|||+||+.|..+++..+.+.++|++|+|+|++|++..+..|+ .+|+||+++++++++++|+
T Consensus 83 ~~~~v~~~l~~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~ 162 (296)
T 3qha_A 83 QVREVVGELAGHAKPGTVIAIHSTISDTTAVELARDLKARDIHIVDAPVSGGAAAAARGELATMVGADREVYERIKPAFK 162 (296)
T ss_dssp HHHHHHHHHHTTCCTTCEEEECSCCCHHHHHHHHHHHGGGTCEEEECCEESCHHHHHHTCEEEEEECCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCCHHHHHHHHHHHHHcCCEEEeCCCcCCHHHHhcCCccEEecCCHHHHHHHHHHHH
Confidence 899999999999999999999999999999888888888999999999999999999999 9999999999999999999
Q ss_pred hhCCceeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHH------HHHHhcccchhhH
Q psy9637 160 KLNPSFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGI------ALMWRGGCIIRSV 233 (490)
Q Consensus 160 ~l~~~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~~~v------~~i~~~g~~~~s~ 233 (490)
.++.+++++|+.| .++.+|+++|++.+.++++++|++.++++. |+|++++ .++++.+. ..|+
T Consensus 163 ~~g~~~~~~g~~g-----~a~~~Kl~~N~~~~~~~~~~~E~~~l~~~~------G~d~~~~~~~~~~~~~i~~~~-~~s~ 230 (296)
T 3qha_A 163 HWAAVVIHAGEPG-----AGTRMKLARNMLTFTSYAAACEAMKLAEAA------GLDLQALGRVVRHTDALTGGP-GAIM 230 (296)
T ss_dssp HHEEEEEEEESTT-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------TCCHHHHHHHHHHHHHHHCCG-GGGC
T ss_pred HHcCCeEEcCChh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCHHHHhhhcchHHHHhcCc-ccCH
Confidence 9999999998875 689999999999999999999999999999 9999999 77776654 3333
Q ss_pred hHhHhHHhhccCcccccccCChhHHH--HH-HHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhCCChhh
Q psy9637 234 FLGNIKAAFDKNPALSNLLLDPFFKD--AI-HATQSSWRAVVSQSALLGIPTPAFATALAFYDGYRSKRLPAN 303 (490)
Q Consensus 234 ~l~~i~~~~~~~~~~~~~~~~~~f~~--~l-~~~~kDl~~~~~~A~~~gv~~P~~~aa~~~~~~~~~~g~~~~ 303 (490)
+.+ .+.+.+. +.|+|.. .+ +++.||++++++.|+++|+++|+++.++++|..+...|++++
T Consensus 231 ~~~--------~~~~~~~-~~~~f~~~~~~~~~~~KD~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~ 294 (296)
T 3qha_A 231 VRD--------NMKDLEP-DNFLYQPFLHTRGLGEKDLSLALALGEAVSVDLPLARLAYEGLAAGLGVPHKEK 294 (296)
T ss_dssp CCS--------SCSCCCT-TSTTHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTCCC---
T ss_pred Hhh--------chhhhhc-CCCCCchhhhhhHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCcccc
Confidence 322 3444455 6777742 12 889999999999999999999999999999999999988543
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-39 Score=324.45 Aligned_cols=279 Identities=13% Similarity=0.105 Sum_probs=244.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
+++|||||+|.||.+||.+|+++||+|++|||++++++.+.+.+. ..+.++.++++. +|+||+|||++..++
T Consensus 9 ~~~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~g~-----~~~~~~~e~~~~---aDvVi~~vp~~~~~~ 80 (306)
T 3l6d_A 9 EFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSPGKAAALVAAGA-----HLCESVKAALSA---SPATIFVLLDNHATH 80 (306)
T ss_dssp SCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTC-----EECSSHHHHHHH---SSEEEECCSSHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCC-----eecCCHHHHHhc---CCEEEEEeCCHHHHH
Confidence 478999999999999999999999999999999999999887654 367899999988 899999999987799
Q ss_pred HHHH--hhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCCCccccccCC-ccCCCCCcchHHHHHHHHHh
Q psy9637 84 DFID--KLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGGEDGARYGP-SLMPGGNPAAWPALKPIFQK 160 (490)
Q Consensus 84 ~vl~--~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg~~~a~~G~-~im~GG~~~a~~~v~~ll~~ 160 (490)
+++. .+.+ +.+|++|||+||+.|..+++..+.+.++|++|+|+||+|+++.+..+. ++|+||+++++++++|+|+.
T Consensus 81 ~v~~~~~l~~-~~~g~ivid~st~~~~~~~~l~~~~~~~g~~~vdapv~g~~~~~~~~~~~i~~gg~~~~~~~~~~ll~~ 159 (306)
T 3l6d_A 81 EVLGMPGVAR-ALAHRTIVDYTTNAQDEGLALQGLVNQAGGHYVKGMIVAYPRNVGHRESHSIHTGDREAFEQHRALLEG 159 (306)
T ss_dssp HHHTSTTHHH-HTTTCEEEECCCCCTTHHHHHHHHHHHTTCEEEEEEEESCGGGTTCTTCEEEEEECHHHHHHHHHHHHT
T ss_pred HHhcccchhh-ccCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEecccccCcccccCCceEEEEcCCHHHHHHHHHHHHH
Confidence 9986 5544 568999999999999999999898999999999999999987776666 89999999999999999999
Q ss_pred hCCceeeC--CC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhcccc-hhhHhHh
Q psy9637 161 LNPSFETS--AP-TPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGGCI-IRSVFLG 236 (490)
Q Consensus 161 l~~~~~~~--g~-~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~~~v~~i~~~g~~-~~s~~l~ 236 (490)
++.+++++ |+ .| .++.+| .+.++++++++|++.++++. |+|++.+.++++.+.. +.|++++
T Consensus 160 lg~~~~~~~~g~~~g-----~g~~~k----~~~~~~~~~~~Ea~~la~~~------Gld~~~~~~~~~~~~~~~~s~~~~ 224 (306)
T 3l6d_A 160 LAGHTVFLPWDEALA-----FATVLH----AHAFAAMVTFFEAVGAGDRF------GLPVSKTARLLLETSRFFVADALE 224 (306)
T ss_dssp TCSEEEECCHHHHHH-----HHHHHH----HHHHHHHHHHHHHHHHHHHT------TCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCEEEecCCCCcc-----HHHHHH----HHHHHHHHHHHHHHHHHHHc------CCCHHHHHHHHHHhhhhcccHHHH
Confidence 98899998 86 44 567777 56678899999999999999 9999999999988764 6788877
Q ss_pred HhHHhhccCcccccccCChhHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhCCChhhhHHHHHHhhc
Q psy9637 237 NIKAAFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSALLGIPTPAFATALAFYDGYRSKRLPANLLQAQRDYFG 313 (490)
Q Consensus 237 ~i~~~~~~~~~~~~~~~~~~f~~~l~~~~kDl~~~~~~A~~~gv~~P~~~aa~~~~~~~~~~g~~~~~~~a~rd~fg 313 (490)
... +.+.+..|.|.+ +++..+.||++++++.+++.|+++|+.+++.+.|+.+.+.|+++.|.+++.+++.
T Consensus 225 ~~~------~~~~~~~~~~~~-~~~~~~~KDl~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~a~~~~~~ 294 (306)
T 3l6d_A 225 EAV------RRLETQDFKGDQ-ARLDVHADAFAHIAQSLHAQGVWTPVFDAVCQVVQRAAAMGYGDQDIAATTKSFA 294 (306)
T ss_dssp HHH------HHHHHTCCCTTS-SBHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTTTTSBGGGGGGGGC
T ss_pred HHH------HHHhcCCCCCCc-ccHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 643 345556666643 2678899999999999999999999999999999999999999999999887653
|
| >4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-35 Score=296.32 Aligned_cols=272 Identities=11% Similarity=0.053 Sum_probs=226.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCC-CeEEEEeCCh-------HHHHHHHHcccCCCCeeccC-CHHHHHhhCCCCcEEEE
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHG-FTVVAYNRTT-------AKVDSFLANEAKGTNIIGAH-SLEELVKNLKKPRRVMM 74 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G-~~V~v~dr~~-------~~~~~l~~~g~~~~~i~~~~-s~~e~v~~l~~~dvIil 74 (490)
+|+|||||+|.||.+||.+|+++| |+|++|||++ +..+.+.+.+ + ++ ++.++++. +|+||+
T Consensus 24 ~m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~~~~~~~~~~~~~~~~~g-----~--~~~s~~e~~~~---aDvVi~ 93 (317)
T 4ezb_A 24 MTTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRFNDPAASGALRARAAELG-----V--EPLDDVAGIAC---ADVVLS 93 (317)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGGGCTTTHHHHHHHHHHTT-----C--EEESSGGGGGG---CSEEEE
T ss_pred CCeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCCccccchHHHHHHHHHCC-----C--CCCCHHHHHhc---CCEEEE
Confidence 478999999999999999999999 9999999998 4555555433 1 55 78888877 999999
Q ss_pred ecCCCchHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCCCccccccCC-ccCCCCCcchHHH
Q psy9637 75 LVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGGEDGARYGP-SLMPGGNPAAWPA 153 (490)
Q Consensus 75 ~vp~~~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg~~~a~~G~-~im~GG~~~a~~~ 153 (490)
|||+... .++++++.+.++++++|||+||+.|.++++..+.+.++|++|+|+|++|+ ..+..|. ++|+||+++ ++
T Consensus 94 avp~~~~-~~~~~~i~~~l~~~~ivv~~st~~p~~~~~~~~~l~~~g~~~~d~pv~g~-~~a~~g~l~i~vgg~~~--~~ 169 (317)
T 4ezb_A 94 LVVGAAT-KAVAASAAPHLSDEAVFIDLNSVGPDTKALAAGAIATGKGSFVEGAVMAR-VPPYAEKVPILVAGRRA--VE 169 (317)
T ss_dssp CCCGGGH-HHHHHHHGGGCCTTCEEEECCSCCHHHHHHHHHHHHTSSCEEEEEEECSC-STTTGGGSEEEEESTTH--HH
T ss_pred ecCCHHH-HHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeccCCCC-chhhcCCEEEEEeCChH--HH
Confidence 9999744 45568999999999999999999999999888888889999999999996 4566666 899999887 99
Q ss_pred HHHHHHhhCCceeeCCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhcccchhh
Q psy9637 154 LKPIFQKLNPSFETSAP-TPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGGCIIRS 232 (490)
Q Consensus 154 v~~ll~~l~~~~~~~g~-~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~~~v~~i~~~g~~~~s 232 (490)
++++|+.++.+++++|+ .| .++.+|+++|++.+.++++++|++.+++++ |+|+ ++++.+..+....+
T Consensus 170 ~~~ll~~~g~~v~~~g~~~g-----~a~~~Kl~~N~~~~~~~~~~~E~~~la~~~------Gid~-~~~~~l~~~~~~~~ 237 (317)
T 4ezb_A 170 VAERLNALGMNLEAVGETPG-----QASSLKMIRSVMIKGVEALLIEALSSAERA------GVTE-RILDSVQETFPGLD 237 (317)
T ss_dssp HHHHHHTTTCEEEEEESSTT-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------TCHH-HHHHHHHHHSTTSC
T ss_pred HHHHHHHhCCCeEEeCCCcC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCH-HHHHHHHhcCcccc
Confidence 99999999999999987 65 789999999999999999999999999999 9999 57777765432222
Q ss_pred HhHhHhHHhhccCcccccccCChhHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHH----HHHHHhCCCh-hhhHHH
Q psy9637 233 VFLGNIKAAFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSALLGIPTPAFATALAF----YDGYRSKRLP-ANLLQA 307 (490)
Q Consensus 233 ~~l~~i~~~~~~~~~~~~~~~~~~f~~~l~~~~kDl~~~~~~A~~~gv~~P~~~aa~~~----~~~~~~~g~~-~~~~~a 307 (490)
+ ... .+.+.++.+.++|. +.||++.++++|++.|+++|+++++.++ |+.+...|++ +++.++
T Consensus 238 ~--~~~------~~~~~~~~~~~g~~-----~~KDl~~~~~~a~~~g~~~pl~~~~~~~~~~a~~~~~~~g~~~~~~~~~ 304 (317)
T 4ezb_A 238 W--RDV------ADYYLSRTFEHGAR-----RVTEMTEAAETIESFGLNAPMSRAACETIAAAHAAMKDQGLSVNDGYRG 304 (317)
T ss_dssp H--HHH------HHHHHHHHHHHHHH-----HHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHTTSSCCTTSHHHH
T ss_pred H--HHh------hhhhhcCCCCCCcc-----hHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHcCCCCCCCHHH
Confidence 2 111 12233344455553 4899999999999999999999999999 7777889997 888888
Q ss_pred HHHhhcc
Q psy9637 308 QRDYFGA 314 (490)
Q Consensus 308 ~rd~fga 314 (490)
+.+.+.+
T Consensus 305 ~~~~~~~ 311 (317)
T 4ezb_A 305 FVPVLAR 311 (317)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 8877654
|
| >3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-34 Score=292.49 Aligned_cols=263 Identities=12% Similarity=0.092 Sum_probs=222.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCC-eEEEEeCC--hHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCc
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGF-TVVAYNRT--TAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGS 80 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~--~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~ 80 (490)
+|||||||+|.||.+||.+|+++|| +|++|||+ +++.+.+.+.+. ..++++.++++. +|+||+|||+..
T Consensus 24 ~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~~~~~~~~~~~~~g~-----~~~~~~~e~~~~---aDvVi~~vp~~~ 95 (312)
T 3qsg_A 24 AMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAASAESWRPRAEELGV-----SCKASVAEVAGE---CDVIFSLVTAQA 95 (312)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSSCHHHHHHHHHHTTC-----EECSCHHHHHHH---CSEEEECSCTTT
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCCCCHHHHHHHHHCCC-----EEeCCHHHHHhc---CCEEEEecCchh
Confidence 5799999999999999999999999 99999997 577777776554 367899999888 899999999974
Q ss_pred hHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHc--cccccccCCCCCccccccCC-ccCCCCCcchHHHHHHH
Q psy9637 81 AVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAK--GLLYVGCGVSGGEDGARYGP-SLMPGGNPAAWPALKPI 157 (490)
Q Consensus 81 ~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~--gi~~ld~~vsGg~~~a~~G~-~im~GG~~~a~~~v~~l 157 (490)
..++++++.+.++++.+|||+||+.|..+.+..+.+.++ |++|+|+|++|++..+ .|. ++|+||+++ ++++++
T Consensus 96 -~~~~~~~l~~~l~~~~ivvd~st~~~~~~~~~~~~~~~~~~g~~~vd~pv~g~~~~~-~g~l~i~vgg~~~--~~~~~l 171 (312)
T 3qsg_A 96 -ALEVAQQAGPHLCEGALYADFTSCSPAVKRAIGDVISRHRPSAQYAAVAVMSAVKPH-GHRVPLVVDGDGA--RRFQAA 171 (312)
T ss_dssp -HHHHHHHHGGGCCTTCEEEECCCCCHHHHHHHHHHHHHHCTTCEEEEEEECSCSTTT-GGGSEEEEESTTH--HHHHHH
T ss_pred -HHHHHHhhHhhcCCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCeEEeccccCCchhh-cCCEEEEecCChH--HHHHHH
Confidence 455779999999999999999999999999988888888 9999999999987655 566 899999887 999999
Q ss_pred HHhhCCceeeCCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhcccchhhHhHh
Q psy9637 158 FQKLNPSFETSAP-TPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGGCIIRSVFLG 236 (490)
Q Consensus 158 l~~l~~~~~~~g~-~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~~~v~~i~~~g~~~~s~~l~ 236 (490)
|+.++.+++++|+ .| .++++|+++|++.+.++.+++|++.++++. |+|+ ++++.+..+. .++.++
T Consensus 172 l~~~g~~~~~~g~~~g-----~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~------Gld~-~~~~~l~~~~--~~~~~~ 237 (312)
T 3qsg_A 172 FTLYGCRIEVLDGEVG-----GAALLKMCRSAVLKGLEALFLEALAAAEKM------GLAD-RVLASLDASF--PEHHLR 237 (312)
T ss_dssp HHTTTCEEEECCSSTT-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT------TCHH-HHHHHHHHHS--GGGTHH
T ss_pred HHHhCCCeEEcCCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCH-HHHHHHHhcC--CchhHH
Confidence 9999999999987 55 789999999999999999999999999999 9999 6888887654 133333
Q ss_pred HhHHhhccCcccccccCChhHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhCCChhh
Q psy9637 237 NIKAAFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSALLGIPTPAFATALAFYDGYRSKRLPAN 303 (490)
Q Consensus 237 ~i~~~~~~~~~~~~~~~~~~f~~~l~~~~kDl~~~~~~A~~~gv~~P~~~aa~~~~~~~~~~g~~~~ 303 (490)
... +.+.+..+.++|. ..||++.+++++++.|+++|+++++.++|+.+.+.|+..+
T Consensus 238 ~~~------~~~~~~~~~~g~~-----~~KDl~~~~~~a~~~g~~~pl~~~~~~~~~~~~~~g~~~~ 293 (312)
T 3qsg_A 238 DLA------LYLVERNLEHADR-----RAHELGEVAATLCSVGVEPLVAEAGYRRLTRVAQVRAALK 293 (312)
T ss_dssp HHH------HHHHHHHHHHHHH-----HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHCS
T ss_pred Hhh------hHhhcCCCCcccc-----hHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhcCCccc
Confidence 221 2233444555553 2799999999999999999999999999999988766543
|
| >3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-33 Score=278.93 Aligned_cols=284 Identities=19% Similarity=0.282 Sum_probs=242.4
Q ss_pred CCCCCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCc
Q psy9637 1 MAAKGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGS 80 (490)
Q Consensus 1 M~~~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~ 80 (490)
|+.+|+|+|||+|.||..++.+|.++|++|++|||++++.+.+.+.+ +..++++.+++.. +|+||+|+|.+.
T Consensus 1 M~~~~~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g-----~~~~~~~~~~~~~---~D~vi~~vp~~~ 72 (301)
T 3cky_A 1 MEKSIKIGFIGLGAMGKPMAINLLKEGVTVYAFDLMEANVAAVVAQG-----AQACENNQKVAAA---SDIIFTSLPNAG 72 (301)
T ss_dssp ---CCEEEEECCCTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHTTT-----CEECSSHHHHHHH---CSEEEECCSSHH
T ss_pred CCCCCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCC-----CeecCCHHHHHhC---CCEEEEECCCHH
Confidence 77678999999999999999999999999999999999998887654 3457889998887 899999999877
Q ss_pred hHHHHHH---hhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCCCccccccCC-ccCCCCCcchHHHHHH
Q psy9637 81 AVDDFID---KLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGGEDGARYGP-SLMPGGNPAAWPALKP 156 (490)
Q Consensus 81 ~v~~vl~---~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg~~~a~~G~-~im~GG~~~a~~~v~~ 156 (490)
.++.++. ++.+.++++.+||+++|..+.+..++.+.+.++|++|+++|+++++.++..|. .+++||+++.++++++
T Consensus 73 ~~~~v~~~~~~l~~~l~~~~~vv~~~~~~~~~~~~l~~~~~~~g~~~~~~p~~~~~~~a~~g~~~~~~~g~~~~~~~v~~ 152 (301)
T 3cky_A 73 IVETVMNGPGGVLSACKAGTVIVDMSSVSPSSTLKMAKVAAEKGIDYVDAPVSGGTKGAEAGTLTIMVGASEAVFEKIQP 152 (301)
T ss_dssp HHHHHHHSTTCHHHHSCTTCEEEECCCCCHHHHHHHHHHHHHTTCEEEECCEESHHHHHHHTCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEEccCCCCHHHHHcCCeEEEECCCHHHHHHHHH
Confidence 8899985 78888999999999999988777777777777899999999999998888888 8889999999999999
Q ss_pred HHHhhCCceeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhcccchhhHhHh
Q psy9637 157 IFQKLNPSFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGGCIIRSVFLG 236 (490)
Q Consensus 157 ll~~l~~~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~~~v~~i~~~g~~~~s~~l~ 236 (490)
+|+.++..++++++.+ .+.++|+++|.+....+..++|++.++++. |++++++.+++..+. ..++.+.
T Consensus 153 ll~~~g~~~~~~~~~g-----~~~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~------G~~~~~~~~~~~~~~-~~~~~~~ 220 (301)
T 3cky_A 153 VLSVIGKDIYHVGDTG-----AGDAVKIVNNLLLGCNMASLAEALVLGVKC------GLKPETMQEIIGKSS-GRSYAME 220 (301)
T ss_dssp HHHHHEEEEEEEESTT-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------TCCHHHHHHHHHTST-TCBHHHH
T ss_pred HHHHhcCCEEEeCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCHHHHHHHHHcCC-CCCHHHH
Confidence 9999999888877765 678999999999999999999999999999 999999999988664 3344443
Q ss_pred HhHHhhccCc-ccccccCChhHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhCCChhhhHHHHHHhh
Q psy9637 237 NIKAAFDKNP-ALSNLLLDPFFKDAIHATQSSWRAVVSQSALLGIPTPAFATALAFYDGYRSKRLPANLLQAQRDYF 312 (490)
Q Consensus 237 ~i~~~~~~~~-~~~~~~~~~~f~~~l~~~~kDl~~~~~~A~~~gv~~P~~~aa~~~~~~~~~~g~~~~~~~a~rd~f 312 (490)
.. .+ .+.+..+.++| +++...||++.+++.++++|+++|+.+++++.|+.+.+.|+++.+..++.+++
T Consensus 221 ~~------~~~~~l~~~~~~g~--~~~~~~kd~~~~~~~a~~~gv~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~ 289 (301)
T 3cky_A 221 AK------MEKFIMSGDFAGGF--AMDLQHKDLGLALEAGKEGNVPLPMTAMATQIFEGGRAMGLGREDMSAVIKVW 289 (301)
T ss_dssp HH------CCCCCCTCCCSSSS--BHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHTTCTTSBGGGGHHHH
T ss_pred Hh------hhhhhhcCCCCCCc--cHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHhcCCCccCHHHHHHHH
Confidence 21 23 34444455555 67889999999999999999999999999999999999999988877766655
|
| >1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-33 Score=277.61 Aligned_cols=280 Identities=21% Similarity=0.297 Sum_probs=241.2
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
|+|+|||+|.||..++.+|.++|++|++|||++++.+.+.+.+. ..+.++.++++. +|+||+|+|++..++.
T Consensus 6 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~-----~~~~~~~~~~~~---~D~vi~~v~~~~~~~~ 77 (299)
T 1vpd_A 6 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGA-----ETASTAKAIAEQ---CDVIITMLPNSPHVKE 77 (299)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTC-----EECSSHHHHHHH---CSEEEECCSSHHHHHH
T ss_pred ceEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHCCC-----eecCCHHHHHhC---CCEEEEECCCHHHHHH
Confidence 68999999999999999999999999999999999998877643 357889888887 8999999998778898
Q ss_pred HH---HhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCCCccccccCC-ccCCCCCcchHHHHHHHHHh
Q psy9637 85 FI---DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGGEDGARYGP-SLMPGGNPAAWPALKPIFQK 160 (490)
Q Consensus 85 vl---~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg~~~a~~G~-~im~GG~~~a~~~v~~ll~~ 160 (490)
++ +++.+.+.++.+||+++|..+.+..++.+.+.+.|++|+++|+++++.++..+. .+++||+++.+++++++|+.
T Consensus 78 ~~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~~~~~pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 157 (299)
T 1vpd_A 78 VALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKAKGVEMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKA 157 (299)
T ss_dssp HHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTCEEEECCEESHHHHHHHTCEEEEEESCHHHHHHHHHHHHT
T ss_pred HHhCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEEecCCCCHhHHhcCCEEEEeCCCHHHHHHHHHHHHH
Confidence 98 678888999999999999988777777777877899999999999988888777 88899999999999999999
Q ss_pred hCCceeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhcccchhhHhHhHhHH
Q psy9637 161 LNPSFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGGCIIRSVFLGNIKA 240 (490)
Q Consensus 161 l~~~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~~~v~~i~~~g~~~~s~~l~~i~~ 240 (490)
++..++++++.+ .+.++|+++|++.+..+.+++|++.++++. |++++++.+++..+.. .++.+...
T Consensus 158 ~g~~~~~~~~~~-----~~~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~------G~~~~~~~~~~~~~~~-~s~~~~~~-- 223 (299)
T 1vpd_A 158 MAGSVVHTGDIG-----AGNVTKLANQVIVALNIAAMSEALTLATKA------GVNPDLVYQAIRGGLA-GSTVLDAK-- 223 (299)
T ss_dssp TEEEEEEEESTT-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------TCCHHHHHHHHTTSTT-CCHHHHHH--
T ss_pred HcCCeEEeCCcC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCHHHHHHHHHccCC-CCHHHHHh--
Confidence 998888887765 678999999999999999999999999999 9999999999987653 34444321
Q ss_pred hhccCcccccccCChhHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhCCChhhhHHHHHHhh
Q psy9637 241 AFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSALLGIPTPAFATALAFYDGYRSKRLPANLLQAQRDYF 312 (490)
Q Consensus 241 ~~~~~~~~~~~~~~~~f~~~l~~~~kDl~~~~~~A~~~gv~~P~~~aa~~~~~~~~~~g~~~~~~~a~rd~f 312 (490)
.+.+.+..+.++| .++...||++.+++.++++|+++|+.+++++.|+.+.+.|+++.+.+++.+++
T Consensus 224 ----~~~~l~~~~~~g~--~~~~~~kd~~~~~~~a~~~gv~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~ 289 (299)
T 1vpd_A 224 ----APMVMDRNFKPGF--RIDLHIKDLANALDTSHGVGAQLPLTAAVMEMMQALRADGHGNDDHSALACYY 289 (299)
T ss_dssp ----HHHHHTTCCCCSS--BHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHTTCTTSBGGGHHHHH
T ss_pred ----hhHhhcCCCCCCC--ChHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCccCHHHHHHHH
Confidence 1223333345555 56778899999999999999999999999999999999999988888777665
|
| >2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-32 Score=274.07 Aligned_cols=287 Identities=15% Similarity=0.188 Sum_probs=239.7
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
|+|+|||+|.||..++.+|+++|++|++|||++++.+.+.+.+. ..+.++.++++. +|+||+|+|.+..++.
T Consensus 1 m~i~iiG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~-----~~~~~~~~~~~~---~Dvvi~~vp~~~~~~~ 72 (296)
T 2gf2_A 1 MPVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGE-----QVVSSPADVAEK---ADRIITMLPTSINAIE 72 (296)
T ss_dssp CCEEEECCSTTHHHHHHHHHHTTCCEEEECSSTHHHHHHHTTTC-----EECSSHHHHHHH---CSEEEECCSSHHHHHH
T ss_pred CeEEEEeccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCC-----eecCCHHHHHhc---CCEEEEeCCCHHHHHH
Confidence 48999999999999999999999999999999999998876543 357889998887 8999999998778899
Q ss_pred HHHh---hcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCCCccccccCC-ccCCCCCcchHHHHHHHHHh
Q psy9637 85 FIDK---LVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGGEDGARYGP-SLMPGGNPAAWPALKPIFQK 160 (490)
Q Consensus 85 vl~~---l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg~~~a~~G~-~im~GG~~~a~~~v~~ll~~ 160 (490)
++.+ +.+.++++.+||++++..+.+..+..+.+.++|..|+++|+++|+..+..|. .+++|++++.+++++++|+.
T Consensus 73 v~~~~~~~~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~g~~~~~~p~~~g~~~a~~~~~~~~~~~~~~~~~~v~~l~~~ 152 (296)
T 2gf2_A 73 AYSGANGILKKVKKGSLLIDSSTIDPAVSKELAKEVEKMGAVFMDAPVSGGVGAARSGNLTFMVGGVEDEFAAAQELLGC 152 (296)
T ss_dssp HHHSTTSGGGTCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEESHHHHHHHTCEEEEEESCGGGHHHHHHHHTT
T ss_pred HHhCchhHHhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEEcCCCCChhHHhcCcEEEEeCCCHHHHHHHHHHHHH
Confidence 8876 4557789999999888887776766677777789999999999998888888 88999999999999999999
Q ss_pred hCCceeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhcccchhhHhHhHhHH
Q psy9637 161 LNPSFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGGCIIRSVFLGNIKA 240 (490)
Q Consensus 161 l~~~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~~~v~~i~~~g~~~~s~~l~~i~~ 240 (490)
++..++++++.| .+...|+++|.+.+..+..++|++.++++. |++++++.+++..+. ..++++.....
T Consensus 153 ~g~~~~~~~~~g-----~~~~~kl~~n~~~~~~~~~~~Ea~~~~~~~------G~~~~~~~~~~~~~~-~~~~~~~~~~~ 220 (296)
T 2gf2_A 153 MGSNVVYCGAVG-----TGQAAKICNNMLLAISMIGTAEAMNLGIRL------GLDPKLLAKILNMSS-GRCWSSDTYNP 220 (296)
T ss_dssp TEEEEEEEESTT-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------TCCHHHHHHHHHTST-TCBHHHHHSCS
T ss_pred HcCCeEEeCCcc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCHHHHHHHHHhCc-ccCHHHHhcCC
Confidence 998888877754 578999999999999999999999999999 999999999998743 45555543110
Q ss_pred hhcc-CcccccccCChhHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhCCChhhhHHHHHHhhc
Q psy9637 241 AFDK-NPALSNLLLDPFFKDAIHATQSSWRAVVSQSALLGIPTPAFATALAFYDGYRSKRLPANLLQAQRDYFG 313 (490)
Q Consensus 241 ~~~~-~~~~~~~~~~~~f~~~l~~~~kDl~~~~~~A~~~gv~~P~~~aa~~~~~~~~~~g~~~~~~~a~rd~fg 313 (490)
.... ...+..+.+.++| .++.+.||++.+++.|+++|+++|+.++++++|+.+.+.|+++.+.+++.+++.
T Consensus 221 ~~~~l~~s~~~~~~~~g~--~~~~~~kd~~~~~~~a~~~gv~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~ 292 (296)
T 2gf2_A 221 VPGVMDGVPSANNYQGGF--GTTLMAKDLGLAQDSATSTKSPILLGSLAHQIYRMMCAKGYSKKDFSSVFQFLR 292 (296)
T ss_dssp STTTCSSSGGGGTTCSSS--BHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTTCTTSBGGGHHHHHS
T ss_pred cccccccchhccCCCCCC--chHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 0000 0111223455555 567789999999999999999999999999999999999999999888887764
|
| >4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-33 Score=296.41 Aligned_cols=165 Identities=73% Similarity=1.256 Sum_probs=154.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhcccchhhHhHhHhHHhhccCcccccccCCh
Q psy9637 176 RDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGGCIIRSVFLGNIKAAFDKNPALSNLLLDP 255 (490)
Q Consensus 176 g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~~~v~~i~~~g~~~~s~~l~~i~~~~~~~~~~~~~~~~~ 255 (490)
+++.++++.++|+++++++++|+|+|.+.++++++++|+||+..++++||+||||||+||+.|..+|.++|.+.|++++|
T Consensus 315 ~~~~~~~~~~~~al~~~~i~~yaqGf~ll~~as~~~~w~l~~~~ia~iwr~GciIrs~~l~~i~~a~~~~~~l~~ll~~~ 394 (484)
T 4gwg_A 315 GDKKSFLEDIRKALYASKIISYAQGFMLLRQAATEFGWTLNYGGIALMWRGGCIIRSVFLGKIKDAFDRNPELQNLLLDD 394 (484)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHTSTTCTTCBHHHHHHHHHHHHCTTCSCGGGSH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHccCceeHHHHHHHHHHHHHhCCCchhhhcCH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhCCChhhhHHHHHHhhcccccccccCCCCceeecccCCC
Q psy9637 256 FFKDAIHATQSSWRAVVSQSALLGIPTPAFATALAFYDGYRSKRLPANLLQAQRDYFGAHTYELLAAPGKFVHTNWTGHG 335 (490)
Q Consensus 256 ~f~~~l~~~~kDl~~~~~~A~~~gv~~P~~~aa~~~~~~~~~~g~~~~~~~a~rd~fgah~~~r~~~~~~~~h~~w~~~~ 335 (490)
.|...+...+..||.++..|.+.|+|+|++++++.||+.++++.+|+|++||||||||+|||+|+|++|.+||++|+++.
T Consensus 395 ~f~~~~~~~~~~~r~vv~~a~~~gip~P~~s~al~y~~~~r~~~lpanliqaqRd~FGaH~~~r~d~~g~~~h~~w~~~~ 474 (484)
T 4gwg_A 395 FFKSAVENCQDSWRRAVSTGVQAGIPMPCFTTALSFYDGYRHEMLPASLIQAQRDYFGAHTYELLAKPGQFIHTNWTGHG 474 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTCSCCTHHHHHHHHHHHHCCCEEETTEEEEEECCCCC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCHHHHHHHHHHhhCCcceEecCCCCCccccCcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988999999755
Q ss_pred CCCcc
Q psy9637 336 GNSIA 340 (490)
Q Consensus 336 ~~~~~ 340 (490)
+++.+
T Consensus 475 ~~~~~ 479 (484)
T 4gwg_A 475 GTVSS 479 (484)
T ss_dssp -----
T ss_pred CCccc
Confidence 55433
|
| >1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-32 Score=273.48 Aligned_cols=281 Identities=20% Similarity=0.276 Sum_probs=239.3
Q ss_pred CCCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchH
Q psy9637 3 AKGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAV 82 (490)
Q Consensus 3 ~~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v 82 (490)
+||+|+|||+|.||..+|.+|.++||+|++|| ++++.+.+.+.+. ..+.++.++++. +|+||+|+|.+..+
T Consensus 2 ~~m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~-~~~~~~~~~~~g~-----~~~~~~~~~~~~---~D~vi~~vp~~~~~ 72 (295)
T 1yb4_A 2 NAMKLGFIGLGIMGSPMAINLARAGHQLHVTT-IGPVADELLSLGA-----VNVETARQVTEF---ADIIFIMVPDTPQV 72 (295)
T ss_dssp --CEEEECCCSTTHHHHHHHHHHTTCEEEECC-SSCCCHHHHTTTC-----BCCSSHHHHHHT---CSEEEECCSSHHHH
T ss_pred CCCEEEEEccCHHHHHHHHHHHhCCCEEEEEc-CHHHHHHHHHcCC-----cccCCHHHHHhc---CCEEEEECCCHHHH
Confidence 45799999999999999999999999999999 9988888876543 357789888876 89999999997778
Q ss_pred HHHHH---hhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCCCccccccCC-ccCCCCCcchHHHHHHHH
Q psy9637 83 DDFID---KLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGGEDGARYGP-SLMPGGNPAAWPALKPIF 158 (490)
Q Consensus 83 ~~vl~---~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg~~~a~~G~-~im~GG~~~a~~~v~~ll 158 (490)
+.++. ++.+.+.++.+||+++|..+.+..++.+.+.++|++|+++|+++++..+..|. .+++||+++.+++++++|
T Consensus 73 ~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~~~~~p~~~~~~~a~~g~~~~~~~~~~~~~~~~~~ll 152 (295)
T 1yb4_A 73 EDVLFGEHGCAKTSLQGKTIVDMSSISPIETKRFAQRVNEMGADYLDAPVSGGEIGAREGTLSIMVGGEQKVFDRVKPLF 152 (295)
T ss_dssp HHHHHSTTSSTTSCCTTEEEEECSCCCHHHHHHHHHHHHTTTEEEEECCEESHHHHHHHTCEEEEEESCHHHHHHHHHHH
T ss_pred HHHHhCchhHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEEccCCCCHHHHHcCCeEEEECCCHHHHHHHHHHH
Confidence 89987 78888999999999999988777777777777899999999999988888888 788999999999999999
Q ss_pred HhhCCceeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhcccchhhHhHhHh
Q psy9637 159 QKLNPSFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGGCIIRSVFLGNI 238 (490)
Q Consensus 159 ~~l~~~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~~~v~~i~~~g~~~~s~~l~~i 238 (490)
+.++.+++++++.+ .+.++|+++|.+....+.+++|++.++++. |++++++.+++..+.. .++.+...
T Consensus 153 ~~~g~~~~~~~~~~-----~~~~~Kl~~n~~~~~~~~~~~E~~~l~~~~------G~~~~~~~~~~~~~~~-~s~~~~~~ 220 (295)
T 1yb4_A 153 DILGKNITLVGGNG-----DGQTCKVANQIIVALNIEAVSEALVFASKA------GADPVRVRQALMGGFA-SSRILEVH 220 (295)
T ss_dssp HHHEEEEEEEESTT-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------TCCHHHHHHHHTSSSS-CBHHHHHH
T ss_pred HHhcCCEEEeCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCHHHHHHHHHcCCC-CCHHHHHh
Confidence 99999888887765 678999999999999999999999999999 9999999999987763 34444422
Q ss_pred HHhhccCcccccccCChhHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhCCChhhhHHHHHHhh
Q psy9637 239 KAAFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSALLGIPTPAFATALAFYDGYRSKRLPANLLQAQRDYF 312 (490)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~f~~~l~~~~kDl~~~~~~A~~~gv~~P~~~aa~~~~~~~~~~g~~~~~~~a~rd~f 312 (490)
. +.+.+..+.++| .++.+.||++.+++.+++.|+++|+.+++++.|+.+.+.|+++.+.+++.+++
T Consensus 221 ~------~~~~~~~~~~g~--~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~ 286 (295)
T 1yb4_A 221 G------ERMINRTFEPGF--KIALHQKDLNLALQSAKALALNLPNTATCQELFNTCAANGGSQLDHSAMVQAL 286 (295)
T ss_dssp H------HHHHTTCCCCSS--BHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCTTSBGGGGHHHH
T ss_pred h------HHHhcCCCCCCC--chHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHcCCCccCHHHHHHHH
Confidence 1 122334455555 45678999999999999999999999999999999999999988877776655
|
| >2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-32 Score=271.94 Aligned_cols=280 Identities=19% Similarity=0.248 Sum_probs=237.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
+|+|+|||+|.||..+|.+|+++|++|++|||++++.+.+.+.+. ..+.++.++++. +|+||+|+|++..++
T Consensus 30 ~~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~-----~~~~~~~~~~~~---~DvVi~av~~~~~~~ 101 (316)
T 2uyy_A 30 DKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGA-----RLGRTPAEVVST---CDITFACVSDPKAAK 101 (316)
T ss_dssp SSCEEEECCSHHHHHHHHHHHHTTCCEEEECSSGGGGHHHHHTTC-----EECSCHHHHHHH---CSEEEECCSSHHHHH
T ss_pred CCeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHcCC-----EEcCCHHHHHhc---CCEEEEeCCCHHHHH
Confidence 478999999999999999999999999999999999888876543 356788888877 899999999777899
Q ss_pred HHHHhh---cccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCCCccccccCC-ccCCCCCcchHHHHHHHHH
Q psy9637 84 DFIDKL---VPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGGEDGARYGP-SLMPGGNPAAWPALKPIFQ 159 (490)
Q Consensus 84 ~vl~~l---~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg~~~a~~G~-~im~GG~~~a~~~v~~ll~ 159 (490)
+++..+ .+.+.++++|||++|..+....++.+.+..+++.|+++|++|++..+..|. .++++|+++.+++++++|+
T Consensus 102 ~v~~~~~~~~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~~~~~v~~p~~g~~~~~~~g~~~~~~~g~~~~~~~v~~ll~ 181 (316)
T 2uyy_A 102 DLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQ 181 (316)
T ss_dssp HHHHSTTCGGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEESCHHHHHHTCEEEEEEECHHHHHHTHHHHH
T ss_pred HHHcCchhHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEEcCccCChhHHhhCCEEEEeCCCHHHHHHHHHHHH
Confidence 988764 477889999999999888777777777777889999999999988888888 7888999999999999999
Q ss_pred hhCCceeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhcccchhhHhHhHhH
Q psy9637 160 KLNPSFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGGCIIRSVFLGNIK 239 (490)
Q Consensus 160 ~l~~~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~~~v~~i~~~g~~~~s~~l~~i~ 239 (490)
.++..++++++.+ .+.+.|++.|.+....+..+.|++.++++. |++.+++.+++..+... ++.+....
T Consensus 182 ~~g~~~~~~~~~~-----~~~~~K~~~n~~~~~~~~~~~Ea~~la~~~------G~~~~~~~~~~~~~~~~-s~~~~~~~ 249 (316)
T 2uyy_A 182 AMGKTSFFLGEVG-----NAAKMMLIVNMVQGSFMATIAEGLTLAQVT------GQSQQTLLDILNQGQLA-SIFLDQKC 249 (316)
T ss_dssp HHEEEEEECSSTT-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------TCCHHHHHHHHHHSTTC-CHHHHHHH
T ss_pred HhcCCEEEeCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCHHHHHHHHHcCCCC-CHHHHHhh
Confidence 9999888888764 678999999999999999999999999999 99999999998876533 33333211
Q ss_pred HhhccCcccccccCChhHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhCCChhhhHHHHHHh
Q psy9637 240 AAFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSALLGIPTPAFATALAFYDGYRSKRLPANLLQAQRDY 311 (490)
Q Consensus 240 ~~~~~~~~~~~~~~~~~f~~~l~~~~kDl~~~~~~A~~~gv~~P~~~aa~~~~~~~~~~g~~~~~~~a~rd~ 311 (490)
+.+.+..+.++| .++.+.||++.+++.+++.|+++|+.+++++.|+.+.+.|+++.|..++.++
T Consensus 250 ------~~~l~~~~~~g~--~~~~~~kd~~~~~~~a~~~gv~~p~~~~v~~~~~~a~~~g~g~~d~~~~~~~ 313 (316)
T 2uyy_A 250 ------QNILQGNFKPDF--YLKYIQKDLRLAIALGDAVNHPTPMAAAANEVYKRAKALDQSDNDMSAVYRA 313 (316)
T ss_dssp ------HHHHHTCCCCSS--BHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCTTSBGGGGGGG
T ss_pred ------HHhhcCCCCCCC--cHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHhcCCCccCHHHHHHH
Confidence 222233345554 5677899999999999999999999999999999999999999887776654
|
| >2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=4.4e-32 Score=269.13 Aligned_cols=277 Identities=20% Similarity=0.261 Sum_probs=235.3
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
|+|+|||+|.||..++.+|.+ |++|++|||++++.+.+.+.+.. .++ +.+++.. +|+||+|+|++..+++
T Consensus 2 ~~i~iiG~G~~G~~~a~~l~~-g~~V~~~~~~~~~~~~~~~~g~~-----~~~-~~~~~~~---~D~vi~~v~~~~~~~~ 71 (289)
T 2cvz_A 2 EKVAFIGLGAMGYPMAGHLAR-RFPTLVWNRTFEKALRHQEEFGS-----EAV-PLERVAE---ARVIFTCLPTTREVYE 71 (289)
T ss_dssp CCEEEECCSTTHHHHHHHHHT-TSCEEEECSSTHHHHHHHHHHCC-----EEC-CGGGGGG---CSEEEECCSSHHHHHH
T ss_pred CeEEEEcccHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHCCCc-----ccC-HHHHHhC---CCEEEEeCCChHHHHH
Confidence 689999999999999999999 99999999999999988776542 344 6666665 8999999999766899
Q ss_pred HHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCCCccccccCC-ccCCCCCcchHHHHHHHHHhhCC
Q psy9637 85 FIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGGEDGARYGP-SLMPGGNPAAWPALKPIFQKLNP 163 (490)
Q Consensus 85 vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg~~~a~~G~-~im~GG~~~a~~~v~~ll~~l~~ 163 (490)
+++++.+.+.++.+||+++|..+....++.+.+.++|++|+++|+++++..+..|. .+++||+++.+++++++| .++.
T Consensus 72 v~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~~~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ll-~~g~ 150 (289)
T 2cvz_A 72 VAEALYPYLREGTYWVDATSGEPEASRRLAERLREKGVTYLDAPVSGGTSGAEAGTLTVMLGGPEEAVERVRPFL-AYAK 150 (289)
T ss_dssp HHHHHTTTCCTTEEEEECSCCCHHHHHHHHHHHHTTTEEEEECCEESHHHHHHHTCEEEEEESCHHHHHHHGGGC-TTEE
T ss_pred HHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEEecCCCChhHHhhCCeEEEECCCHHHHHHHHHHH-hhcC
Confidence 99999999999999999999888777777777777799999999999998888888 788899999999999999 9998
Q ss_pred ceeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhcccchhhHhHhHhHHhhc
Q psy9637 164 SFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGGCIIRSVFLGNIKAAFD 243 (490)
Q Consensus 164 ~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~~~v~~i~~~g~~~~s~~l~~i~~~~~ 243 (490)
+++++++.+ .+.++|+++|++....+.+++|++.++++. |++++++.+++..+.. .++++....
T Consensus 151 ~~~~~~~~~-----~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~------G~~~~~~~~~~~~~~~-~s~~~~~~~---- 214 (289)
T 2cvz_A 151 KVVHVGPVG-----AGHAVKAINNALLAVNLWAAGEGLLALVKQ------GVSAEKALEVINASSG-RSNATENLI---- 214 (289)
T ss_dssp EEEEEESTT-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------TCCHHHHHHHHTTSTT-CBHHHHHTH----
T ss_pred CeEEcCCCc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CcCHHHHHHHHHccCC-CCHHHHHhc----
Confidence 777777654 678999999999999999999999999999 9999999999987663 345554321
Q ss_pred cCc-ccccccCChhHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhCCChhhhHHHHHHhh
Q psy9637 244 KNP-ALSNLLLDPFFKDAIHATQSSWRAVVSQSALLGIPTPAFATALAFYDGYRSKRLPANLLQAQRDYF 312 (490)
Q Consensus 244 ~~~-~~~~~~~~~~f~~~l~~~~kDl~~~~~~A~~~gv~~P~~~aa~~~~~~~~~~g~~~~~~~a~rd~f 312 (490)
+ .+.+..+.++| +++...||++.+++.++++|+++|+.+++++.++.+.+.|+++.+.+++.+++
T Consensus 215 --~~~~l~~~~~~g~--~~~~~~kd~~~~~~~a~~~gv~~p~~~~v~~~~~~a~~~g~~~~d~~~~~~~~ 280 (289)
T 2cvz_A 215 --PQRVLTRAFPKTF--ALGLLVKDLGIAMGVLDGEKAPSPLLRLAREVYEMAKRELGPDADHVEALRLL 280 (289)
T ss_dssp --HHHTTTSCCCCSS--BHHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHCTTSBGGGGHHHH
T ss_pred --cchhhcCCCCCCc--ChHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHcCCCccCHHHHHHHH
Confidence 1 22233345554 67788999999999999999999999999999999999999988877766655
|
| >4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-30 Score=272.79 Aligned_cols=272 Identities=16% Similarity=0.110 Sum_probs=226.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHccc---------------CCCCeeccCCHHHHHhhCCC
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEA---------------KGTNIIGAHSLEELVKNLKK 68 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~---------------~~~~i~~~~s~~e~v~~l~~ 68 (490)
..+|+|||+|.||.+||.+|+++||+|++||+++++++.+.+... ...++..+++++++++.
T Consensus 8 ~~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~kv~~l~~g~~~~~epgl~~~~~~~~~~g~l~~ttd~~ea~~~--- 84 (446)
T 4a7p_A 8 SVRIAMIGTGYVGLVSGACFSDFGHEVVCVDKDARKIELLHQNVMPIYEPGLDALVASNVKAGRLSFTTDLAEGVKD--- 84 (446)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHTTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHTT---
T ss_pred ceEEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHhcCCCCccCCCHHHHHHhhcccCCEEEECCHHHHHhc---
Confidence 358999999999999999999999999999999999998876210 01346778999988887
Q ss_pred CcEEEEecCCCc----------hHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCCCcccccc
Q psy9637 69 PRRVMMLVKAGS----------AVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGGEDGARY 138 (490)
Q Consensus 69 ~dvIil~vp~~~----------~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg~~~a~~ 138 (490)
+|+||+|||++. .++++++++.+.+++|++||+.||+.|.++++..+.+.+.+.. .|.++.++|+.+++
T Consensus 85 aDvvii~Vptp~~~~~~~~Dl~~v~~v~~~i~~~l~~g~iVV~~STv~pgtt~~l~~~l~e~~~~-~d~~v~~~Pe~a~e 163 (446)
T 4a7p_A 85 ADAVFIAVGTPSRRGDGHADLSYVFAAAREIAENLTKPSVIVTKSTVPVGTGDEVERIIAEVAPN-SGAKVVSNPEFLRE 163 (446)
T ss_dssp CSEEEECCCCCBCTTTCCBCTHHHHHHHHHHHHSCCSCCEEEECSCCCTTHHHHHHHHHHHHSTT-SCCEEEECCCCCCT
T ss_pred CCEEEEEcCCCCccccCCccHHHHHHHHHHHHHhcCCCCEEEEeCCCCchHHHHHHHHHHHhCCC-CCceEEeCcccccc
Confidence 999999998875 4899999999999999999999999999999888888877655 78999999999988
Q ss_pred CC---------ccCCCCC-cchHHHHHHHHHhhCCc---eeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9637 139 GP---------SLMPGGN-PAAWPALKPIFQKLNPS---FETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMR 205 (490)
Q Consensus 139 G~---------~im~GG~-~~a~~~v~~ll~~l~~~---~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~ 205 (490)
|. .+++|++ ++++++++++|+.+... +++.++.+ .++++|+++|++.+.+++.++|+..+++
T Consensus 164 G~a~~d~~~p~~ivvG~~~~~~~~~~~~ly~~~~~~~~~~~~~~d~~-----~aE~~Kl~~N~~~a~~ia~~nE~~~l~~ 238 (446)
T 4a7p_A 164 GAAIEDFKRPDRVVVGTEDEFARQVMREIYRPLSLNQSAPVLFTGRR-----TSELIKYAANAFLAVKITFINEIADLCE 238 (446)
T ss_dssp TSHHHHHHSCSCEEEECSCHHHHHHHHHHHCSCC-----CEEEECHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhccCCCEEEEeCCcHHHHHHHHHHHHHHhcCCCeEEEeCCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 86 5788886 68899999999998764 45556553 6899999999999999999999999999
Q ss_pred HHHHHhCCCCCHHHHHHHHhcccchhhHhHhHhHHhhccCcccccccCChhHHHHHHHHHHHHHHHHHHHHHcCCCchHH
Q psy9637 206 QAAEIHGWKLNYGGIALMWRGGCIIRSVFLGNIKAAFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSALLGIPTPAF 285 (490)
Q Consensus 206 ~a~~~~~~Gld~~~v~~i~~~g~~~~s~~l~~i~~~~~~~~~~~~~~~~~~f~~~l~~~~kDl~~~~~~A~~~gv~~P~~ 285 (490)
++ |+|.++++++++.++. +....+.|++.....++.||++.++..|++.|+++|++
T Consensus 239 ~~------GiD~~~v~~~~~~~~r------------------ig~~~l~pg~G~gg~c~~KD~~~l~~~A~~~g~~~~l~ 294 (446)
T 4a7p_A 239 QV------GADVQEVSRGIGMDNR------------------IGGKFLHAGPGYGGSCFPKDTLALMKTAADNETPLRIV 294 (446)
T ss_dssp HT------TCCHHHHHHHHHTSTT------------------C---CCCCCSCCCTTTHHHHHHHHHHHHHHTTCCCHHH
T ss_pred Hc------CCCHHHHHHHHhcCCC------------------CCCccCCCCCCcchhhHHHHHHHHHHHHHhcCCCCHHH
Confidence 99 9999999999876542 22223455544466779999999999999999999999
Q ss_pred HHHHHHHHHHHhCCChhhhHHHHHHhhc
Q psy9637 286 ATALAFYDGYRSKRLPANLLQAQRDYFG 313 (490)
Q Consensus 286 ~aa~~~~~~~~~~g~~~~~~~a~rd~fg 313 (490)
+++.+..+.. +..+++.+.+.+|
T Consensus 295 ~~~~~iN~~~-----~~~~~~~i~~~l~ 317 (446)
T 4a7p_A 295 EATVQVNDAR-----KRAMGRKVIKAMG 317 (446)
T ss_dssp HHHHHHHHHH-----HHHHHHHHHHHTT
T ss_pred HHHHHHHHHH-----HHHHHHHHHHHhc
Confidence 9999886654 4567777777765
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.5e-30 Score=269.31 Aligned_cols=272 Identities=11% Similarity=0.093 Sum_probs=227.2
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccC---------------CCCeeccCCHHHHHhhCCCC
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAK---------------GTNIIGAHSLEELVKNLKKP 69 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~---------------~~~i~~~~s~~e~v~~l~~~ 69 (490)
|||+|||+|.||.++|.+|+++||+|++||+++++++.+.+.... ..++..+++++++++. +
T Consensus 3 mkI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~t~d~~ea~~~---a 79 (450)
T 3gg2_A 3 LDIAVVGIGYVGLVSATCFAELGANVRCIDTDRNKIEQLNSGTIPIYEPGLEKMIARNVKAGRLRFGTEIEQAVPE---A 79 (450)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTCSCCCSTTHHHHHHHHHHTTSEEEESCHHHHGGG---C
T ss_pred CEEEEECcCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHcCCCcccCCCHHHHHHhhcccCcEEEECCHHHHHhc---C
Confidence 699999999999999999999999999999999999988762110 2346678899988877 8
Q ss_pred cEEEEecCCCc---------hHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccc---ccccCCCCCccccc
Q psy9637 70 RRVMMLVKAGS---------AVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLL---YVGCGVSGGEDGAR 137 (490)
Q Consensus 70 dvIil~vp~~~---------~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~---~ld~~vsGg~~~a~ 137 (490)
|+||+|||++. .++++++++.+.++++++||+.||+.|.++++..+.+.+.+.. .+|.++.++|+.++
T Consensus 80 DvViiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~g~iVV~~STv~pgt~~~l~~~l~~~~~~~~~~~d~~v~~~Pe~a~ 159 (450)
T 3gg2_A 80 DIIFIAVGTPAGEDGSADMSYVLDAARSIGRAMSRYILIVTKSTVPVGSYRLIRKAIQEELDKREVLIDFDIASNPEFLK 159 (450)
T ss_dssp SEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHHHHHHTTCCCCEEEEECCCCCC
T ss_pred CEEEEEcCCCcccCCCcChHHHHHHHHHHHhhCCCCCEEEEeeeCCCcchHHHHHHHHHhccccCcCcceeEEechhhhc
Confidence 99999999975 7899999999999999999999999988888888777776543 37889999999988
Q ss_pred cCCc---------cCCCCC-cchHHHHHHHHHhhCC--ceeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9637 138 YGPS---------LMPGGN-PAAWPALKPIFQKLNP--SFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMR 205 (490)
Q Consensus 138 ~G~~---------im~GG~-~~a~~~v~~ll~~l~~--~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~ 205 (490)
.|.. +++||+ ++++++++++|+.+.. ..++.++.+ .++++|+++|++.+.+++.++|+..+++
T Consensus 160 eG~~~~~~~~p~~ivvG~~~~~~~~~~~~l~~~~~~~~~~~~~~d~~-----~aE~~Kl~~N~~~a~~ia~~nE~~~l~~ 234 (450)
T 3gg2_A 160 EGNAIDDFMKPDRVVVGVDSDRARELITSLYKPMLLNNFRVLFMDIA-----SAEMTKYAANAMLATRISFMNDVANLCE 234 (450)
T ss_dssp TTSHHHHHHSCSCEEEEESSHHHHHHHHHHHTTTCCSCCCEEEECHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhccCCCEEEEEcCCHHHHHHHHHHHHHHhcCCCeEEecCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8873 677874 7899999999999876 234555543 6899999999999999999999999999
Q ss_pred HHHHHhCCCCCHHHHHHHHhcccchhhHhHhHhHHhhccCcccccccCChhHHHHHHHHHHHHHHHHHHHHHcCCCchHH
Q psy9637 206 QAAEIHGWKLNYGGIALMWRGGCIIRSVFLGNIKAAFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSALLGIPTPAF 285 (490)
Q Consensus 206 ~a~~~~~~Gld~~~v~~i~~~g~~~~s~~l~~i~~~~~~~~~~~~~~~~~~f~~~l~~~~kDl~~~~~~A~~~gv~~P~~ 285 (490)
++ |+|+++++++++.++ ++....+.|++.....++.||++.++..|++.|+++|++
T Consensus 235 ~~------Gid~~~v~~~~~~~~------------------rig~~~~~pg~G~gg~c~~KD~~~l~~~a~~~g~~~~l~ 290 (450)
T 3gg2_A 235 RV------GADVSMVRLGIGSDS------------------RIGSKFLYPGCGYGGSCFPKDVKALIRTAEDNGYRMEVL 290 (450)
T ss_dssp HH------TCCHHHHHHHHHTST------------------TTCSSSCCCSSCCCSSHHHHHHHHHHHHHHHTTCCCHHH
T ss_pred Hh------CCCHHHHHHHHcCCC------------------CCCcccCCCCCCCCcccHHhhHHHHHHHHHHcCCCcHHH
Confidence 99 999999999987553 233345566655566789999999999999999999999
Q ss_pred HHHHHHHHHHHhCCChhhhHHHHHHhhc
Q psy9637 286 ATALAFYDGYRSKRLPANLLQAQRDYFG 313 (490)
Q Consensus 286 ~aa~~~~~~~~~~g~~~~~~~a~rd~fg 313 (490)
+++.+..+.. +..+++.+.+.++
T Consensus 291 ~~~~~iN~~~-----~~~~~~~~~~~~~ 313 (450)
T 3gg2_A 291 EAVERVNEKQ-----KSILFDKFSTYYK 313 (450)
T ss_dssp HHHHHHHHHH-----TTHHHHHHHHHTT
T ss_pred HHHHHHHHHH-----HHHHHHHHHHHhc
Confidence 9999886643 5667777777764
|
| >3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.2e-29 Score=265.77 Aligned_cols=276 Identities=12% Similarity=0.070 Sum_probs=222.3
Q ss_pred CCCcEEEEcccHHHHHHHHHHHHC-CC-eEEEEeCChH----HHHHHHHcccC-----------------CCCeeccCCH
Q psy9637 3 AKGDIGLIGLAVMGQNLILNMNDH-GF-TVVAYNRTTA----KVDSFLANEAK-----------------GTNIIGAHSL 59 (490)
Q Consensus 3 ~~~~IgiIGlG~MG~~lA~~L~~~-G~-~V~v~dr~~~----~~~~l~~~g~~-----------------~~~i~~~~s~ 59 (490)
.+|||+|||+|.||.+||.+|+++ || +|++||++++ +++.+.+.... ..++..+++
T Consensus 17 ~~mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~~~~~kv~~l~~g~~~i~~~e~gl~~l~~~~~~~g~l~~ttd- 95 (478)
T 3g79_A 17 PIKKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSKSSGYKIEMLNRGESPLKGEEPGLEELIGKVVKAGKFECTPD- 95 (478)
T ss_dssp SCCEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCTTTTTHHHHHTTTCCCSSCCGGGHHHHHHHHHHTTCEEEESC-
T ss_pred CCCEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChhHhHHHHHHHHhcCCCccccCCCHHHHHHhhcccCCeEEeCc-
Confidence 468999999999999999999999 99 9999999999 99887652100 234555666
Q ss_pred HHHHhhCCCCcEEEEecCCCc-----------hHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHH--Hcc-----
Q psy9637 60 EELVKNLKKPRRVMMLVKAGS-----------AVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALE--AKG----- 121 (490)
Q Consensus 60 ~e~v~~l~~~dvIil~vp~~~-----------~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~--~~g----- 121 (490)
.+.++. +|+||+|||++. .+..+.+++.+.+++|++||+.||+.|.++++..+.+. ..|
T Consensus 96 ~ea~~~---aDvViiaVptp~~~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~pgtt~~v~~~ile~~~g~~~~~ 172 (478)
T 3g79_A 96 FSRISE---LDAVTLAIQTPFANPKDLEPDFSALIDGIRNVGKYLKPGMLVVLESTITPGTTEGMAKQILEEESGLKAGE 172 (478)
T ss_dssp GGGGGG---CSEEEECCCCCCCSSCCSSCCCHHHHHHHHHHHHHCCTTCEEEECSCCCTTTTTTHHHHHHHHHHCCCBTT
T ss_pred HHHHhc---CCEEEEecCCchhccCCccccHHHHHHHHHHHHhhcCCCcEEEEeCCCChHHHHHHHHHHHHHhcCCCcCC
Confidence 556665 899999999863 25677789999999999999999999999888875433 345
Q ss_pred -ccccccCCCCCccccccC----CccCCCCCcchHHHHHHHHHhh-CCceeeCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q psy9637 122 -LLYVGCGVSGGEDGARYG----PSLMPGGNPAAWPALKPIFQKL-NPSFETSAPTPKPQRDKKEFLENIRQALYASKIV 195 (490)
Q Consensus 122 -i~~ld~~vsGg~~~a~~G----~~im~GG~~~a~~~v~~ll~~l-~~~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~ 195 (490)
+.++++|.++.+-.+..+ +.+|.|++++.+++++++|+.+ +..++++++.+ .++++|+++|++.+.+++
T Consensus 173 d~~v~~~Pe~~~~G~a~~~~~~~~~Iv~G~~~~~~~~~~~ly~~~~~~~~~~~~~~~-----~aE~~Kl~~N~~~a~~Ia 247 (478)
T 3g79_A 173 DFALAHAPERVMVGRLLKNIREHDRIVGGIDEASTKRAVELYSPVLTVGQVIPMSAT-----AAEVTKTAENTFRDLQIA 247 (478)
T ss_dssp TBEEEECCCCCCTTSHHHHHHHSCEEEEESSHHHHHHHHHHHGGGCSSCCEEEEEHH-----HHHHHHHHHHHHHHHHHH
T ss_pred ceeEEeCCccCCccchhhhhcCCcEEEEeCCHHHHHHHHHHHhhhccCCeEEeCCHH-----HHHHHHHHHHHHHHHHHH
Confidence 467889988777665433 2688899999999999999999 77777777664 689999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHhcccchhhHhHhHhHHhhccCcccccccCChhHHHHHHHHHHHHHHHHHHH
Q psy9637 196 SYAQGFMLMRQAAEIHGWKLNYGGIALMWRGGCIIRSVFLGNIKAAFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQS 275 (490)
Q Consensus 196 ~~aE~~~la~~a~~~~~~Gld~~~v~~i~~~g~~~~s~~l~~i~~~~~~~~~~~~~~~~~~f~~~l~~~~kDl~~~~~~A 275 (490)
+++|+..+++++ |+|..+++++++... ++ ++....+.|+|.....++.||++.++..|
T Consensus 248 ~~nE~~~l~e~~------GiD~~~v~~~~~~~~-----~~-----------ri~~~~~~PG~G~GG~c~~KD~~~l~~~a 305 (478)
T 3g79_A 248 AINQLALYCEAM------GINVYDVRTGVDSLK-----GE-----------GITRAVLWPGAGVGGHCLTKDTYHLERGV 305 (478)
T ss_dssp HHHHHHHHHHHT------TCCHHHHHHHHHTSC-----CS-----------SSCCCCCCCCSCCCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc------CCCHHHHHHHHCCCc-----hh-----------hhccccCCCCCCcchhhHHHHHHHHHHHH
Confidence 999999999999 999999999986442 00 23345677777656678999999999999
Q ss_pred HHcCCC-------chHHHHHHHHHHHHHhCCChhhhHHHHHHhhcc
Q psy9637 276 ALLGIP-------TPAFATALAFYDGYRSKRLPANLLQAQRDYFGA 314 (490)
Q Consensus 276 ~~~gv~-------~P~~~aa~~~~~~~~~~g~~~~~~~a~rd~fga 314 (490)
++.|++ +|+++++.+.-+ ..+..+++.+.+.++.
T Consensus 306 ~~~g~~~~~~~~~~~li~~~~~iN~-----~~~~~~~~~i~~~l~~ 346 (478)
T 3g79_A 306 KIGRGELDYPEGADSIYVLARKVND-----FMPAHMYNLTVAALER 346 (478)
T ss_dssp TTSSCCCCCCSSCCCHHHHHHHHHH-----HHHHHHHHHHHHHHHT
T ss_pred HHcCCCcccccchhHHHHHHHHHHH-----HHHHHHHHHHHHHHhh
Confidence 999987 899999987744 3456677777776654
|
| >1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.95 E-value=7e-28 Score=236.17 Aligned_cols=253 Identities=13% Similarity=0.112 Sum_probs=201.5
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeC--ChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNR--TTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAV 82 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr--~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v 82 (490)
|||+|||+|.||..||.+|+++||+|++||| +++..+.+.+.+. . +++.+++.. +|+||+|||+...+
T Consensus 1 M~I~iIG~G~mG~~la~~l~~~g~~V~~~~~~~~~~~~~~~~~~g~-----~--~~~~~~~~~---aDvvi~~v~~~~~~ 70 (264)
T 1i36_A 1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGV-----T--ETSEEDVYS---CPVVISAVTPGVAL 70 (264)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTC-----E--ECCHHHHHT---SSEEEECSCGGGHH
T ss_pred CeEEEEechHHHHHHHHHHHHCCCeEEEeCCccCHHHHHHHHHCCC-----c--CCHHHHHhc---CCEEEEECCCHHHH
Confidence 4899999999999999999999999999999 7788888776543 2 677788776 89999999997555
Q ss_pred HHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCCCccccccCCccCCCCCcchHHHHHHHHHhhC
Q psy9637 83 DDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGGEDGARYGPSLMPGGNPAAWPALKPIFQKLN 162 (490)
Q Consensus 83 ~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg~~~a~~G~~im~GG~~~a~~~v~~ll~~l~ 162 (490)
+. +.++.+.+++ +|||++++.+.+..++.+.+.+.| |+++|+++++..+..|..+++||+.+ +++++ |+.++
T Consensus 71 ~~-~~~~~~~~~~--~vi~~s~~~~~~~~~l~~~~~~~g--~~~~~v~~~~~~~~~g~~~~~~g~~~--~~~~~-l~~~g 142 (264)
T 1i36_A 71 GA-ARRAGRHVRG--IYVDINNISPETVRMASSLIEKGG--FVDAAIMGSVRRKGADIRIIASGRDA--EEFMK-LNRYG 142 (264)
T ss_dssp HH-HHHHHTTCCS--EEEECSCCCHHHHHHHHHHCSSSE--EEEEEECSCHHHHGGGCEEEEESTTH--HHHHG-GGGGT
T ss_pred HH-HHHHHHhcCc--EEEEccCCCHHHHHHHHHHHhhCC--eeeeeeeCCccccccCCeEEecCCcH--HHhhh-HHHcC
Confidence 55 4677777765 999999988777777777776666 99999999998887777778888776 88999 99999
Q ss_pred CceeeCCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhcccchhhHhHhHhHHh
Q psy9637 163 PSFETSAP-TPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGGCIIRSVFLGNIKAA 241 (490)
Q Consensus 163 ~~~~~~g~-~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~~~v~~i~~~g~~~~s~~l~~i~~~ 241 (490)
.+++++++ .| .+.++|+++|++.+..+.+++|++.++++. |++.+ +.+.+..+. ..+++. ..
T Consensus 143 ~~~~~~~~~~g-----~~~~~kl~~n~~~~~~~~~~~Ea~~la~~~------G~~~~-~~~~~~~~~-g~~~~~-~~--- 205 (264)
T 1i36_A 143 LNIEVRGREPG-----DASAIKMLRSSYTKGVSALLWETLTAAHRL------GLEED-VLEMLEYTE-GNDFRE-SA--- 205 (264)
T ss_dssp CEEEECSSSTT-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------TCHHH-HHHHHHTTS-CSSTHH-HH---
T ss_pred CeeEECCCCcC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCcHH-HHHHHHHhc-CccHHH-HH---
Confidence 98888886 44 688999999999999999999999999999 99987 778887543 222221 11
Q ss_pred hccCcccccccCChhHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhCCChh
Q psy9637 242 FDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSALLGIPTPAFATALAFYDGYRSKRLPA 302 (490)
Q Consensus 242 ~~~~~~~~~~~~~~~f~~~l~~~~kDl~~~~~~A~~~gv~~P~~~aa~~~~~~~~~~g~~~ 302 (490)
+.+.+..+.+++. ..||++.+++.+++. +++|+.+++++.|+.+.+.+++.
T Consensus 206 ----~~~~~~~~~~g~~-----~~~~~~~~~~~a~~~-v~~p~~~~v~~~~~~~~~~~~~~ 256 (264)
T 1i36_A 206 ----ISRLKSSCIHARR-----RYEEMKEVQDMLAEV-IDPVMPTCIIRIFDKLKDVKVSA 256 (264)
T ss_dssp ----HHHHHHHHHTHHH-----HHHHHHHHHHHHHTT-SCCSHHHHHHHHHHHHCC-----
T ss_pred ----HHHhcCCCCcchh-----hHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHcCCCh
Confidence 1122233444443 579999999999999 99999999999999988776643
|
| >3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-27 Score=249.31 Aligned_cols=252 Identities=13% Similarity=0.105 Sum_probs=205.5
Q ss_pred CCCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccC-------------CCCeeccCCHHHHHhhCCCC
Q psy9637 3 AKGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAK-------------GTNIIGAHSLEELVKNLKKP 69 (490)
Q Consensus 3 ~~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~-------------~~~i~~~~s~~e~v~~l~~~ 69 (490)
.+|||+|||+|.||.++|..|++ ||+|++||+++++++.+.+.... ..++..+++++++++. +
T Consensus 35 ~~mkIaVIGlG~mG~~lA~~La~-G~~V~~~D~~~~~v~~l~~g~~~i~e~~l~~ll~~~~~~l~~ttd~~ea~~~---a 110 (432)
T 3pid_A 35 EFMKITISGTGYVGLSNGVLIAQ-NHEVVALDIVQAKVDMLNQKISPIVDKEIQEYLAEKPLNFRATTDKHDAYRN---A 110 (432)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHT-TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHTT---C
T ss_pred CCCEEEEECcCHHHHHHHHHHHc-CCeEEEEecCHHHhhHHhccCCccccccHHHHHhhccCCeEEEcCHHHHHhC---C
Confidence 35799999999999999999998 99999999999999988752110 1246778899888887 9
Q ss_pred cEEEEecCCCc----------hHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCCCccccccC
Q psy9637 70 RRVMMLVKAGS----------AVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGGEDGARYG 139 (490)
Q Consensus 70 dvIil~vp~~~----------~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg~~~a~~G 139 (490)
|+||+|||++. .++++++++.+ +++|++||+.||+.|.++++..+.+.+.++.| +|+++++..|..+
T Consensus 111 DvViiaVPt~~~~~~~~~Dl~~V~~v~~~i~~-l~~g~iVV~~STv~pgtt~~l~~~l~~~~v~~--sPe~~~~G~A~~~ 187 (432)
T 3pid_A 111 DYVIIATPTDYDPKTNYFNTSTVEAVIRDVTE-INPNAVMIIKSTIPVGFTRDIKERLGIDNVIF--SPEFLREGRALYD 187 (432)
T ss_dssp SEEEECCCCEEETTTTEEECHHHHHHHHHHHH-HCTTSEEEECSCCCTTHHHHHHHHHTCCCEEE--CCCCCCTTSHHHH
T ss_pred CEEEEeCCCccccccccccHHHHHHHHHHHHh-cCCCcEEEEeCCCChHHHHHHHHHHhhccEee--cCccCCcchhhhc
Confidence 99999999962 57888899999 99999999999999999999888887766655 9999999888655
Q ss_pred C----ccCCCCCcchHHHHHHHHHh--hCC--ceeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9637 140 P----SLMPGGNPAAWPALKPIFQK--LNP--SFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIH 211 (490)
Q Consensus 140 ~----~im~GG~~~a~~~v~~ll~~--l~~--~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~ 211 (490)
. .+|+||+++.++++.++|.. +.. .++. ++.+ .|+++|+++|++.+.+++.++|+..+++++
T Consensus 188 ~l~p~rIvvG~~~~~~~~~~~ll~~~~~~~~~~v~~-~~~~-----~AE~~Kl~~N~~~a~~Ia~~nEl~~lae~~---- 257 (432)
T 3pid_A 188 NLHPSRIVIGERSARAERFADLLKEGAIKQDIPTLF-TDST-----EAEAIKLFANTYLALRVAYFNELDSYAESQ---- 257 (432)
T ss_dssp HHSCSCEEESSCSHHHHHHHHHHHHHCSSSSCCEEE-CCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----
T ss_pred ccCCceEEecCCHHHHHHHHHHHHhhhccCCCeEEe-cCcc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----
Confidence 3 68999999999999999997 443 3443 4443 789999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHhcccchhhHhHhHhHHhhccCcccccccCChhHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHH
Q psy9637 212 GWKLNYGGIALMWRGGCIIRSVFLGNIKAAFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSALLGIPTPAFATALAF 291 (490)
Q Consensus 212 ~~Gld~~~v~~i~~~g~~~~s~~l~~i~~~~~~~~~~~~~~~~~~f~~~l~~~~kDl~~~~~~A~~~gv~~P~~~aa~~~ 291 (490)
|+|.+++++++.... ++......|+|...-.++.||.+.++.. ..|++.++++++.+.
T Consensus 258 --GiD~~~v~~~~~~dp------------------rig~~~~~pg~G~GG~C~pkD~~~L~~~--~~~~~~~li~~~~~~ 315 (432)
T 3pid_A 258 --GLNSKQIIEGVCLDP------------------RIGNHYNNPSFGYGGYCLPKDTKQLLAN--YESVPNNIIAAIVDA 315 (432)
T ss_dssp --TCCHHHHHHHHHTST------------------TTCSSSCCCCSCCCTTTHHHHHHHHHHH--TTTSCCSHHHHHHHH
T ss_pred --CCCHHHHHHHHccCC------------------CCCcccCCCCCCCcccchhhhHHHHHHH--hcCCchhHHHHHHHH
Confidence 999999999986443 2333334555444455789999988644 469999999999876
Q ss_pred HH
Q psy9637 292 YD 293 (490)
Q Consensus 292 ~~ 293 (490)
=+
T Consensus 316 N~ 317 (432)
T 3pid_A 316 NR 317 (432)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A | Back alignment and structure |
|---|
Probab=99.95 E-value=7.6e-28 Score=255.18 Aligned_cols=273 Identities=14% Similarity=0.124 Sum_probs=215.5
Q ss_pred CCCCCcEEEEcccHHHHHHHHHHHHC--CCeEEEEeCChHHHHHHHHcccC--------------CCCeeccCCHHHHHh
Q psy9637 1 MAAKGDIGLIGLAVMGQNLILNMNDH--GFTVVAYNRTTAKVDSFLANEAK--------------GTNIIGAHSLEELVK 64 (490)
Q Consensus 1 M~~~~~IgiIGlG~MG~~lA~~L~~~--G~~V~v~dr~~~~~~~l~~~g~~--------------~~~i~~~~s~~e~v~ 64 (490)
|+.+|||+|||+|.||.++|.+|+++ ||+|++|||++++++.+.+.+.. ..++..++++.++++
T Consensus 2 M~~~mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~~~~~~l~~g~~~i~e~~l~~~~~~~~~~~~~~t~~~~e~~~ 81 (467)
T 2q3e_A 2 MFEIKKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCRGKNLFFSTNIDDAIK 81 (467)
T ss_dssp CCCCCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHHH
T ss_pred CCCccEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHHh
Confidence 66678999999999999999999999 89999999999999886431100 123556788888887
Q ss_pred hCCCCcEEEEecCCCch--------------HHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCC
Q psy9637 65 NLKKPRRVMMLVKAGSA--------------VDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVS 130 (490)
Q Consensus 65 ~l~~~dvIil~vp~~~~--------------v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vs 130 (490)
. +|+||+|||++.. +.++++++.+.++++++||+.||+.+..+.+..+.+.+.+..++|++++
T Consensus 82 ~---aDvViiaVptp~~~~~v~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~g~~~~l~~~l~~~~~~~~d~~V~ 158 (467)
T 2q3e_A 82 E---ADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVTEKSTVPVRAAESIRRIFDANTKPNLNLQVL 158 (467)
T ss_dssp H---CSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHTCCSEEEEEECSCCCTTHHHHHHHHHHHTCCTTCEEEEE
T ss_pred c---CCEEEEEcCCchhhccccccCCCcHHHHHHHHHHHHhhCCCCCEEEECCcCCchHHHHHHHHHHHhCCCCCCeEEE
Confidence 7 8999999998654 4677788889999999999999999888888777777777778899999
Q ss_pred CCccccccCC-c--------cCCCC-----CcchHHHHHHHHHhh-CCceeeCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q psy9637 131 GGEDGARYGP-S--------LMPGG-----NPAAWPALKPIFQKL-NPSFETSAPTPKPQRDKKEFLENIRQALYASKIV 195 (490)
Q Consensus 131 Gg~~~a~~G~-~--------im~GG-----~~~a~~~v~~ll~~l-~~~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~ 195 (490)
++|+.+..|. . +++|| +++++++++++|+.+ +...+++++.+ .++++|++.|++.+.+++
T Consensus 159 ~~Pe~~~~G~~~~d~~~~~rivvGg~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~-----~ae~~Kl~~N~~~a~~ia 233 (467)
T 2q3e_A 159 SNPEFLAEGTAIKDLKNPDRVLIGGDETPEGQRAVQALCAVYEHWVPREKILTTNTW-----SSELSKLAANAFLAQRIS 233 (467)
T ss_dssp ECCCCCCTTSHHHHHHSCSCEEEECCSSHHHHHHHHHHHHHHTTTSCGGGEEEECHH-----HHHHHHHHHHHHHHHHHH
T ss_pred eCHHHhhcccchhhccCCCEEEECCCCCCCCHHHHHHHHHHHHHhccCCeEEecCHH-----HHHHHHHHHHHHHHHHHH
Confidence 9999998888 3 77898 778899999999999 65666666653 689999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHhcccchhhHhHhHhHHhhccCcccccccCChhHHHHHHHHHHHHHHHHHHH
Q psy9637 196 SYAQGFMLMRQAAEIHGWKLNYGGIALMWRGGCIIRSVFLGNIKAAFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQS 275 (490)
Q Consensus 196 ~~aE~~~la~~a~~~~~~Gld~~~v~~i~~~g~~~~s~~l~~i~~~~~~~~~~~~~~~~~~f~~~l~~~~kDl~~~~~~A 275 (490)
.++|++.++++. |+|.+++.+++..+..+ ....+.|++.....++.||++.++..|
T Consensus 234 ~~nE~~~l~~~~------Gid~~~v~~~~~~~~~~------------------~~~~~~pg~g~gg~c~~kD~~~l~~~a 289 (467)
T 2q3e_A 234 SINSISALCEAT------GADVEEVATAIGMDQRI------------------GNKFLKASVGFGGSCFQKDVLNLVYLC 289 (467)
T ss_dssp HHHHHHHHHHHH------TCCHHHHHHHHHTSTTT------------------CSSSCCCCSCCCSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh------CcCHHHHHHHHcCCCCC------------------CccccCCCCCCCCccHHHHHHHHHHHH
Confidence 999999999999 99999999998765321 112344443323445789999999999
Q ss_pred HHcCCCchHHHHHHHHHHHHHhCC--ChhhhHHHHHH
Q psy9637 276 ALLGIPTPAFATALAFYDGYRSKR--LPANLLQAQRD 310 (490)
Q Consensus 276 ~~~gv~~P~~~aa~~~~~~~~~~g--~~~~~~~a~rd 310 (490)
+++|++ .+.++++.+...+ .+..+++.+.+
T Consensus 290 ~~~g~~-----~~~~~~~~~~~~n~~~~~~~~~~~~~ 321 (467)
T 2q3e_A 290 EALNLP-----EVARYWQQVIDMNDYQRRRFASRIID 321 (467)
T ss_dssp HHTTCH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCc-----hHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 999987 3344444444333 34455555555
|
| >2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.5e-27 Score=253.56 Aligned_cols=274 Identities=12% Similarity=0.115 Sum_probs=219.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHHC--CCeEEEEeCChHHHHHHHHcccC--------------CCCeeccCCHHHHHhhCC
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDH--GFTVVAYNRTTAKVDSFLANEAK--------------GTNIIGAHSLEELVKNLK 67 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~--G~~V~v~dr~~~~~~~l~~~g~~--------------~~~i~~~~s~~e~v~~l~ 67 (490)
+|||+|||+|.||.++|.+|+++ ||+|++||+++++++.+.+.... ..++..++++.+.+..
T Consensus 9 ~mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~~~~~~~~~l~~t~~~~~~~~~-- 86 (481)
T 2o3j_A 9 VSKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNTAKIAEWNSDKLPIYEPGLDEIVFAARGRNLFFSSDIPKAIAE-- 86 (481)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHHHH--
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHhhc--
Confidence 47999999999999999999998 79999999999999988652210 0135667788887777
Q ss_pred CCcEEEEecCCCc--------------hHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHH-ccc-cccccCCCC
Q psy9637 68 KPRRVMMLVKAGS--------------AVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEA-KGL-LYVGCGVSG 131 (490)
Q Consensus 68 ~~dvIil~vp~~~--------------~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~-~gi-~~ld~~vsG 131 (490)
+|+||+|||++. .++++++++.+.++++++||+.||+.+..+.+..+.+.+ .++ ..+|.++.+
T Consensus 87 -aDvvii~Vptp~~~~g~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~gt~~~l~~~l~~~~~~~~~~d~~v~~ 165 (481)
T 2o3j_A 87 -ADLIFISVNTPTKMYGRGKGMAPDLKYVESVSRTIAQYAGGPKIVVEKSTVPVKAAESIGCILREAQKNNENLKFQVLS 165 (481)
T ss_dssp -CSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHHHTC----CCEEEEE
T ss_pred -CCEEEEecCCccccccccccCCCcHHHHHHHHHHHHHhCCCCCEEEECCCCCCCHHHHHHHHHHHhhCcCcCCceEEEe
Confidence 899999998864 388888999999999999999999999888877777776 554 246667777
Q ss_pred CccccccCC---------ccCCCCCc-----chHHHHHHHHHhhCC-ceeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy9637 132 GEDGARYGP---------SLMPGGNP-----AAWPALKPIFQKLNP-SFETSAPTPKPQRDKKEFLENIRQALYASKIVS 196 (490)
Q Consensus 132 g~~~a~~G~---------~im~GG~~-----~a~~~v~~ll~~l~~-~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~ 196 (490)
+|+.+..|. .+++||+. +++++++++|+.++. ..++.++.+ .+++.|++.|++.+.+++.
T Consensus 166 ~Pe~~~~G~a~~~~~~~~~iviG~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~d~~-----~ae~~Kl~~N~~~a~~ia~ 240 (481)
T 2o3j_A 166 NPEFLAEGTAMKDLANPDRVLIGGESSPEGLQAVAELVRIYENWVPRNRIITTNTW-----SSELSKLVANAFLAQRISS 240 (481)
T ss_dssp CCCCCCTTCHHHHHHSCSCEEEEECSSHHHHHHHHHHHHHHHTTSCGGGEEEEEHH-----HHHHHHHHHHHHHHHHHHH
T ss_pred CcccccccchhhcccCCCEEEEEecCchhhHHHHHHHHHHHHhhcCCCeEEecCHH-----HHHHHHHHHHHHHHHHHHH
Confidence 777666554 57788876 578899999999985 566656543 6899999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHhcccchhhHhHhHhHHhhccCcccccccCChhHHHHHHHHHHHHHHHHHHHH
Q psy9637 197 YAQGFMLMRQAAEIHGWKLNYGGIALMWRGGCIIRSVFLGNIKAAFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSA 276 (490)
Q Consensus 197 ~aE~~~la~~a~~~~~~Gld~~~v~~i~~~g~~~~s~~l~~i~~~~~~~~~~~~~~~~~~f~~~l~~~~kDl~~~~~~A~ 276 (490)
++|+..++++. |+|.+++.++++.+. ++....+.|+|.....++.||++.++..|+
T Consensus 241 ~nE~~~la~~~------Gid~~~v~~~~~~~~------------------ri~~~~~~pg~g~gg~c~~KD~~~l~~~A~ 296 (481)
T 2o3j_A 241 INSISAVCEAT------GAEISEVAHAVGYDT------------------RIGSKFLQASVGFGGSCFQKDVLSLVYLCE 296 (481)
T ss_dssp HHHHHHHHHHH------SCCHHHHHHHHHTST------------------TTCSSSCCCCSCCCSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh------CcCHHHHHHHHccCC------------------CCCCCCCCCCCccCCccHHHHHHHHHHHHH
Confidence 99999999999 999999999987553 222334567665455678899999999999
Q ss_pred HcCCC--chHHHHHHHHHHHHHhCCChhhhHHHHHHhhcc
Q psy9637 277 LLGIP--TPAFATALAFYDGYRSKRLPANLLQAQRDYFGA 314 (490)
Q Consensus 277 ~~gv~--~P~~~aa~~~~~~~~~~g~~~~~~~a~rd~fga 314 (490)
+.|++ +|+++++.+. +...+..+++.+.+.|+.
T Consensus 297 ~~g~~~~~~l~~~~~~~-----N~~~~~~~~~~~~~~l~~ 331 (481)
T 2o3j_A 297 SLNLPQVADYWQGVINI-----NNWQRRRFADKIIAELFN 331 (481)
T ss_dssp HTTCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHTTT
T ss_pred HcCCCccchHHHHHHHH-----HHhhHHHHHHHHHHhhcc
Confidence 99999 9999998744 444566777777777763
|
| >2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=7e-27 Score=247.98 Aligned_cols=273 Identities=13% Similarity=0.083 Sum_probs=220.3
Q ss_pred CCCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccC---------------CCCeeccCCHHHHHhhCC
Q psy9637 3 AKGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAK---------------GTNIIGAHSLEELVKNLK 67 (490)
Q Consensus 3 ~~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~---------------~~~i~~~~s~~e~v~~l~ 67 (490)
..|||+|||+|.||.++|.+|+++||+|++||+++++++.+.+.+.. ..++..++++++.++.
T Consensus 7 ~~~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~~~~v~~l~~~~~~i~e~gl~~~l~~~~~~~~l~~ttd~~~a~~~-- 84 (478)
T 2y0c_A 7 GSMNLTIIGSGSVGLVTGACLADIGHDVFCLDVDQAKIDILNNGGVPIHEPGLKEVIARNRSAGRLRFSTDIEAAVAH-- 84 (478)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEECCHHHHHHH--
T ss_pred CCceEEEECcCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhcccCCEEEECCHHHHhhc--
Confidence 35899999999999999999999999999999999999998764311 1246678888888877
Q ss_pred CCcEEEEecCCC---------chHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHc---cccc-cccCCCCCcc
Q psy9637 68 KPRRVMMLVKAG---------SAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAK---GLLY-VGCGVSGGED 134 (490)
Q Consensus 68 ~~dvIil~vp~~---------~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~---gi~~-ld~~vsGg~~ 134 (490)
+|+||+|||++ ..++++++.+.+.++++++||+.||+.+..+++..+.+.+. | .| +|.+++++|+
T Consensus 85 -aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~iVV~~STv~~gt~~~l~~~l~~~~~~g-~~~~~~~v~~~Pe 162 (478)
T 2y0c_A 85 -GDVQFIAVGTPPDEDGSADLQYVLAAARNIGRYMTGFKVIVDKSTVPVGTAERVRAAVAEELAKR-GGDQMFSVVSNPE 162 (478)
T ss_dssp -CSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHHHHHHT-TCCCCEEEEECCC
T ss_pred -CCEEEEEeCCCcccCCCccHHHHHHHHHHHHHhcCCCCEEEEeCCcCCCchHHHHHHHHHHhcCC-CCCccEEEEEChh
Confidence 89999999986 68999999999999999999999998888887776666553 3 34 7889999999
Q ss_pred ccccCC---------ccCCCCC-c----chHHHHHHHHHhhCC--ceeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy9637 135 GARYGP---------SLMPGGN-P----AAWPALKPIFQKLNP--SFETSAPTPKPQRDKKEFLENIRQALYASKIVSYA 198 (490)
Q Consensus 135 ~a~~G~---------~im~GG~-~----~a~~~v~~ll~~l~~--~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~a 198 (490)
.++.|. .+++|++ + ++.++++++|+.+.. .++..++.+ .+++.|++.|++.+.+++.++
T Consensus 163 ~~~eG~~~~~~~~p~~iviG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~di~-----~ae~~Kl~~N~~~a~~ia~~n 237 (478)
T 2y0c_A 163 FLKEGAAVDDFTRPDRIVIGCDDDVPGERARELMKKLYAPFNRNHERTLYMDVR-----SAEFTKYAANAMLATRISFMN 237 (478)
T ss_dssp CCCTTCHHHHHHSCSCEEEECCSSHHHHHHHHHHHHHTGGGGSSSCCEEEECHH-----HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccceeeccCCCCEEEEEECCCcccHHHHHHHHHHHHHHhccCCeEEcCCHH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 888876 4677876 5 688999999998764 455555543 689999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHhcccchhhHhHhHhHHhhccCcccccccCChhHHHHHHHHHHHHHHHHHHHHHc
Q psy9637 199 QGFMLMRQAAEIHGWKLNYGGIALMWRGGCIIRSVFLGNIKAAFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSALL 278 (490)
Q Consensus 199 E~~~la~~a~~~~~~Gld~~~v~~i~~~g~~~~s~~l~~i~~~~~~~~~~~~~~~~~~f~~~l~~~~kDl~~~~~~A~~~ 278 (490)
|+..++++. |+|.+++.+.+... +++....+.|++.....++.||++.+++.|+++
T Consensus 238 E~~~la~~~------Gid~~~v~~~i~~~------------------~rig~~~~~pG~g~gg~c~~kD~~~l~~~A~~~ 293 (478)
T 2y0c_A 238 ELANLADRF------GADIEAVRRGIGSD------------------PRIGYHFLYAGCGYGGSCFPKDVEALIRTADEH 293 (478)
T ss_dssp HHHHHHHHT------TCCHHHHHHHHHTS------------------TTTCSTTCCCSSCCCSSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHh------CCCHHHHHHHHhcC------------------CccCcccCCCCcccccCcCHHHHHHHHHHHHHc
Confidence 999999999 99999998876522 222223344544333345789999999999999
Q ss_pred CCCchHHHHHHHHHHHHHhCCChhhhHHHHHHhhc
Q psy9637 279 GIPTPAFATALAFYDGYRSKRLPANLLQAQRDYFG 313 (490)
Q Consensus 279 gv~~P~~~aa~~~~~~~~~~g~~~~~~~a~rd~fg 313 (490)
|+++|+++++.+.++.. +..+++.+.+.|+
T Consensus 294 gv~~pl~~~v~~in~~~-----~~~~~~~~~~~~~ 323 (478)
T 2y0c_A 294 GQSLQILKAVSSVNATQ-----KRVLADKIVARFG 323 (478)
T ss_dssp TCCCHHHHHHHHHHHHH-----TTHHHHHHHHHHC
T ss_pred CCCcHHHHHHHHHHHHh-----HHHHHHHHHHHhc
Confidence 99999999999998754 4556676777775
|
| >3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.2e-27 Score=247.49 Aligned_cols=266 Identities=14% Similarity=0.158 Sum_probs=200.1
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHh------------hCCCCcEE
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVK------------NLKKPRRV 72 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~------------~l~~~dvI 72 (490)
.|+.|||+|.||.+||.+|+++||+|++||+++++++.+.+.... + .-..++++++ +++.+|+|
T Consensus 12 ~~~~ViGlGyvGlp~A~~La~~G~~V~~~D~~~~kv~~L~~g~~p---i-~epgl~~ll~~~~~~g~l~~ttd~~~aDvv 87 (431)
T 3ojo_A 12 SKLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQQTIDKLQNGQIS---I-EEPGLQEVYEEVLSSGKLKVSTTPEASDVF 87 (431)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCS---S-CCTTHHHHHHHHHHTTCEEEESSCCCCSEE
T ss_pred CccEEEeeCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHCCCCC---c-CCCCHHHHHHhhcccCceEEeCchhhCCEE
Confidence 589999999999999999999999999999999999998763211 0 1112222211 13358999
Q ss_pred EEecCCCc-----------hHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHH-cc------ccccccCCCCCcc
Q psy9637 73 MMLVKAGS-----------AVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEA-KG------LLYVGCGVSGGED 134 (490)
Q Consensus 73 il~vp~~~-----------~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~-~g------i~~ld~~vsGg~~ 134 (490)
|+|||++. .+..+.+++.+.+++|++||+.||+.|.++++..+.+.+ .| +.++++|.+..+.
T Consensus 88 ii~VpTp~~~~~~~~~Dl~~V~~~~~~i~~~l~~g~iVV~~STV~pgtt~~v~~~i~e~~g~~~~~d~~v~~~Pe~~~~G 167 (431)
T 3ojo_A 88 IIAVPTPNNDDQYRSCDISLVMRALDSILPFLKKGNTIIVESTIAPKTMDDFVKPVIENLGFTIGEDIYLVHCPERVLPG 167 (431)
T ss_dssp EECCCCCBCSSSSCBBCCHHHHHHHHHHGGGCCTTEEEEECSCCCTTHHHHTHHHHHHTTTCCBTTTEEEEECCCCCCTT
T ss_pred EEEeCCCccccccCCccHHHHHHHHHHHHHhCCCCCEEEEecCCChhHHHHHHHHHHHHcCCCcCCCeEEEECCCcCCCc
Confidence 99999975 267778899999999999999999999999888766544 55 3678888777665
Q ss_pred ccccC---C-ccCCCCCcchHHHHHHHHHhhCCceeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9637 135 GARYG---P-SLMPGGNPAAWPALKPIFQKLNPSFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEI 210 (490)
Q Consensus 135 ~a~~G---~-~im~GG~~~a~~~v~~ll~~l~~~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~ 210 (490)
.+..+ + .+|+|++++++++++++|+.++...+++++.+ .|+++|+++|++.+.+++.++|+..+++++
T Consensus 168 ~A~~~~~~p~~Iv~G~~~~~~~~~~~ly~~~~~~~~~~~~~~-----~AE~~Kl~~N~~~a~~Ia~~nE~~~l~e~~--- 239 (431)
T 3ojo_A 168 KILEELVHNNRIIGGVTKACIEAGKRVYRTFVQGEMIETDAR-----TAEMSKLMENTYRDVNIALANELTKICNNL--- 239 (431)
T ss_dssp SHHHHHHHSCEEEEESSHHHHHHHHHHHTTTCCSCEEEEEHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---
T ss_pred chhhcccCCCEEEEeCCHHHHHHHHHHHHHHhCCcEEeCCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---
Confidence 55333 2 68889999999999999999988777767654 789999999999999999999999999999
Q ss_pred hCCCCCHHHHHHHHhcccchhhHhHhHhHHhhccCcccccccCChhHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHH
Q psy9637 211 HGWKLNYGGIALMWRGGCIIRSVFLGNIKAAFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSALLGIPTPAFATALA 290 (490)
Q Consensus 211 ~~~Gld~~~v~~i~~~g~~~~s~~l~~i~~~~~~~~~~~~~~~~~~f~~~l~~~~kDl~~~~~~A~~~gv~~P~~~aa~~ 290 (490)
|+|..+++++++... ++ ..+.|++...-.++.||.+.++..|++.| ++++++.+
T Consensus 240 ---GiD~~~v~~~~~~~~------------------ri--~~l~pG~G~GG~C~pkD~~~L~~~a~~~~---~li~~~~~ 293 (431)
T 3ojo_A 240 ---NINVLDVIEMANKHP------------------RV--NIHQPGPGVGGHCLAVDPYFIIAKDPENA---KLIQTGRE 293 (431)
T ss_dssp ---TCCHHHHHHHHTTST------------------TC--CCCCCCSCCCCCCBCSCC---------CC---HHHHHHHH
T ss_pred ---CCCHHHHHHHHccCC------------------Cc--ccCCCCCCccccchhhhHHHHHHHHHHHh---HHHHHHHH
Confidence 999999999986443 22 23445544445568899999999999987 77777776
Q ss_pred HHHHHHhCCChhhhHHHHHHhhc
Q psy9637 291 FYDGYRSKRLPANLLQAQRDYFG 313 (490)
Q Consensus 291 ~~~~~~~~g~~~~~~~a~rd~fg 313 (490)
. +...+..+++.+.+.++
T Consensus 294 i-----N~~~~~~v~~~~~~~l~ 311 (431)
T 3ojo_A 294 I-----NNSMPAYVVDTTKQIIK 311 (431)
T ss_dssp H-----HHTHHHHHHHHHHHHHH
T ss_pred H-----HHHhHHHHHHHHHHHhh
Confidence 5 45566667776666663
|
| >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1e-25 Score=236.93 Aligned_cols=257 Identities=12% Similarity=0.129 Sum_probs=207.9
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccC---------------CCCeeccCCHHHHHhhCCCC
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAK---------------GTNIIGAHSLEELVKNLKKP 69 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~---------------~~~i~~~~s~~e~v~~l~~~ 69 (490)
|||+|||+|.||.++|.+|+++||+|++||+++++++.+.+.+.. ..++..+++++++++. +
T Consensus 1 mkI~VIG~G~vG~~~A~~la~~G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~g~l~~t~~~~~~~~~---a 77 (436)
T 1mv8_A 1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLD---S 77 (436)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHT---C
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHhhcccCceEEeCCHHHHhcc---C
Confidence 489999999999999999999999999999999999988763210 1235677888887776 8
Q ss_pred cEEEEecCCCch---------HHHHHHhhcccCCC---CCEEEcCCCCChHH-HHHHHHHHHHc-cccc-cccCCCCCcc
Q psy9637 70 RRVMMLVKAGSA---------VDDFIDKLVPLLEK---GDIIIDGGNSEYQD-TDRRSKALEAK-GLLY-VGCGVSGGED 134 (490)
Q Consensus 70 dvIil~vp~~~~---------v~~vl~~l~~~l~~---g~iiId~s~~~~~~-~~~~~~~l~~~-gi~~-ld~~vsGg~~ 134 (490)
|+||+|||++.. ++++++++.+.+++ +++||+.||..+.. .....+.+.+. |..+ ++.+++++|+
T Consensus 78 DvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~~~~iVV~~Stv~~g~t~~~l~~~l~~~~g~~~~~~~~v~~~Pe 157 (436)
T 1mv8_A 78 DVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDFGVGTNPE 157 (436)
T ss_dssp SEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHHHHSCCBTTTBEEEECCC
T ss_pred CEEEEEcCCCcccCCCcchHHHHHHHHHHHHHhcccCCCcEEEEeCCcCCCchHHHHHHHHHHhcCcccCCcEEEEECcc
Confidence 999999999765 89999999999988 99999999988877 44444566554 7776 7888888888
Q ss_pred ccccCC---------ccCCCCC-cchHHHHHHHHHhhCCceeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9637 135 GARYGP---------SLMPGGN-PAAWPALKPIFQKLNPSFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLM 204 (490)
Q Consensus 135 ~a~~G~---------~im~GG~-~~a~~~v~~ll~~l~~~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la 204 (490)
.+..|. .+++|++ +++.++++++|+.++..++. ++.+ .++++|++.|++.+.+++.++|+..++
T Consensus 158 ~~~~G~~~~~~~~~~~iv~G~~~~~~~~~~~~l~~~~~~~v~~-~~~~-----~ae~~Kl~~N~~~a~~ia~~nE~~~l~ 231 (436)
T 1mv8_A 158 FLRESTAIKDYDFPPMTVIGELDKQTGDLLEEIYRELDAPIIR-KTVE-----VAEMIKYTCNVWHAAKVTFANEIGNIA 231 (436)
T ss_dssp CCCTTSHHHHHHSCSCEEEEESSHHHHHHHHHHHTTSSSCEEE-EEHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhccCCCEEEEEcCCHHHHHHHHHHHhccCCCEEc-CCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 887776 3677776 78899999999999876655 4432 679999999999999999999999999
Q ss_pred HHHHHHhCCCCCHHHHHHHHhcccchhhHhHhHhHHhhccCcccc--cccCChhHHHHHHHHHHHHHHHHHHHHHcCCCc
Q psy9637 205 RQAAEIHGWKLNYGGIALMWRGGCIIRSVFLGNIKAAFDKNPALS--NLLLDPFFKDAIHATQSSWRAVVSQSALLGIPT 282 (490)
Q Consensus 205 ~~a~~~~~~Gld~~~v~~i~~~g~~~~s~~l~~i~~~~~~~~~~~--~~~~~~~f~~~l~~~~kDl~~~~~~A~~~gv~~ 282 (490)
++. |+|.+++.+++.... ++. ...+.|++.....++.||++.+++.|+++|+++
T Consensus 232 ~~~------Gid~~~v~~~~~~~~------------------r~~~~~~~~~pg~g~gg~~~~kD~~~l~~~a~~~g~~~ 287 (436)
T 1mv8_A 232 KAV------GVDGREVMDVICQDH------------------KLNLSRYYMRPGFAFGGSCLPKDVRALTYRASQLDVEH 287 (436)
T ss_dssp HHT------TSCHHHHHHHHTTCT------------------TTTTSSTTCSCCSCCCSSSHHHHHHHHHHHHHHTTCCC
T ss_pred HHh------CCCHHHHHHHhcCCC------------------CCCCcccCCCCcccccCcCcHhhHHHHHHHHHHcCCCc
Confidence 999 999999999876432 111 233344332234567899999999999999999
Q ss_pred hHHHHHHHHHHH
Q psy9637 283 PAFATALAFYDG 294 (490)
Q Consensus 283 P~~~aa~~~~~~ 294 (490)
|+++++.+..+.
T Consensus 288 pl~~~v~~in~~ 299 (436)
T 1mv8_A 288 PMLGSLMRSNSN 299 (436)
T ss_dssp TTGGGHHHHHHH
T ss_pred HHHHHHHHHHhH
Confidence 999999988553
|
| >1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=7.7e-25 Score=227.79 Aligned_cols=267 Identities=11% Similarity=0.042 Sum_probs=206.6
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccC-------------CCCeeccCCHHHHHhhCCCCcE
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAK-------------GTNIIGAHSLEELVKNLKKPRR 71 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~-------------~~~i~~~~s~~e~v~~l~~~dv 71 (490)
|||+|||+|.||.++|.+|++ ||+|++|||++++++.+.+.+.. ..++..++++.+.+.. +|+
T Consensus 1 MkI~VIG~G~vG~~~A~~La~-G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~l~~t~~~~~~~~~---aDv 76 (402)
T 1dlj_A 1 MKIAVAGSGYVGLSLGVLLSL-QNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYKE---AEL 76 (402)
T ss_dssp CEEEEECCSHHHHHHHHHHTT-TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHHH---CSE
T ss_pred CEEEEECCCHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHcCCCCcCCCCHHHHHHhccCcEEEeCCHHHHhcC---CCE
Confidence 489999999999999999999 99999999999999988765431 1134566788887777 899
Q ss_pred EEEecCCCc----------hHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCCCcccccc---
Q psy9637 72 VMMLVKAGS----------AVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGGEDGARY--- 138 (490)
Q Consensus 72 Iil~vp~~~----------~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg~~~a~~--- 138 (490)
||+|||++. .++++++.+.+ +.++++||+.||..+..+.+..+.+.+. .++.+|.+..+..+..
T Consensus 77 viiavpt~~~~~~~~~dl~~v~~v~~~i~~-l~~~~iVV~~ST~~~g~~~~l~~~~~~~--~v~~~Pe~~~~G~a~~~~~ 153 (402)
T 1dlj_A 77 VIIATPTNYNSRINYFDTQHVETVIKEVLS-VNSHATLIIKSTIPIGFITEMRQKFQTD--RIIFSPEFLRESKALYDNL 153 (402)
T ss_dssp EEECCCCCEETTTTEECCHHHHHHHHHHHH-HCSSCEEEECSCCCTTHHHHHHHHTTCS--CEEECCCCCCTTSTTHHHH
T ss_pred EEEecCCCcccCCCCccHHHHHHHHHHHHh-hCCCCEEEEeCCCCccHHHHHHHHhCCC--eEEECCccccCcchhhccc
Confidence 999999974 58999999999 9999999998888888777766655433 5566776665554432
Q ss_pred CC-ccCCCCCc-------chHHHHHHHHHhhC-C-c-eeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9637 139 GP-SLMPGGNP-------AAWPALKPIFQKLN-P-S-FETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQA 207 (490)
Q Consensus 139 G~-~im~GG~~-------~a~~~v~~ll~~l~-~-~-~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a 207 (490)
.+ .+++|+++ +..+.+.++|..-. . . .++.++.+ .+++.|+++|++.+.+++.++|+..++++.
T Consensus 154 ~~~riviG~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~di~-----~ae~~Kl~~N~~~a~~ia~~nE~~~l~~~~ 228 (402)
T 1dlj_A 154 YPSRIIVSCEENDSPKVKADAEKFALLLKSAAKKNNVPVLIMGAS-----EAEAVKLFANTYLALRVAYFNELDTYAESR 228 (402)
T ss_dssp SCSCEEEECCTTSCHHHHHHHHHHHHHHHHHCSCSCCCEEEECHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCcccchhHHHHHHHHHHHhhhhccCCceEEecChH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 22 48889887 66777888886532 2 2 34445543 689999999999999999999999999999
Q ss_pred HHHhCCCCCHHHHHHHHhcccchhhHhHhHhHHhhccCcccccccCChhHHHHHHHHHHHHHHHHHHHHHcCCCchHHHH
Q psy9637 208 AEIHGWKLNYGGIALMWRGGCIIRSVFLGNIKAAFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSALLGIPTPAFAT 287 (490)
Q Consensus 208 ~~~~~~Gld~~~v~~i~~~g~~~~s~~l~~i~~~~~~~~~~~~~~~~~~f~~~l~~~~kDl~~~~~~A~~~gv~~P~~~a 287 (490)
|+|..++.++++.+.. +....+.|+|.....++.||++.++..|+ |+++|++++
T Consensus 229 ------Gid~~~v~~~~~~~~r------------------i~~~~~~pg~g~gg~c~~kD~~~l~~~a~--~~~~~l~~~ 282 (402)
T 1dlj_A 229 ------KLNSHMIIQGISYDDR------------------IGMHYNNPSFGYGGYSLPKDTKQLLANYN--NIPQTLIEA 282 (402)
T ss_dssp ------TCCHHHHHHHHHTSTT------------------TCSSSCCCCSSCCSSHHHHHHHHHHHHHT--TSSCSHHHH
T ss_pred ------CCCHHHHHHHhccCCC------------------CCcCCCCCCCccCCccHHhhHHHHHHHhc--CCChHHHHH
Confidence 9999999999875541 22234456555566789999999998884 999999999
Q ss_pred HHHHHHHHHhCCChhhhHHHHHHhhcc
Q psy9637 288 ALAFYDGYRSKRLPANLLQAQRDYFGA 314 (490)
Q Consensus 288 a~~~~~~~~~~g~~~~~~~a~rd~fga 314 (490)
+.+.-+.. +...++.+.+.++.
T Consensus 283 ~~~~N~~~-----~~~~~~~~~~~~~~ 304 (402)
T 1dlj_A 283 IVSSNNVR-----KSYIAKQIINVLKE 304 (402)
T ss_dssp HHHHHHHH-----HHHHHHHHHHHHTT
T ss_pred HHHHHHHh-----HHHHHHHHHHHhhh
Confidence 98875543 45566767777654
|
| >2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.8e-25 Score=236.52 Aligned_cols=143 Identities=71% Similarity=1.231 Sum_probs=135.2
Q ss_pred CCCCcceeecCCCCcchhHHhhhhHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhccCcchhHHHHHHHHHhcccCC
Q psy9637 344 GSEPCCDWVGEQGAGHFVKMVHNGIEYGDMQLICEAYHLMTGALGMSHDEMSAVFEDWNKGELDSFLIEITKDILKFKDT 423 (490)
Q Consensus 344 ~~~~c~~~~g~~g~gh~vkmvhngiey~~m~~~~E~~~~~~~~~~~~~~~~~~~~~~w~~g~~~s~l~~~~~~~~~~~~~ 423 (490)
+|+||+.|+|+.|+||++|||||+|+|++||+++|++.++++.+|++.+++.++++.||+|+++||+++++..++.++|.
T Consensus 172 dGe~~v~~vg~~G~g~~~Kl~~N~~~~~~~~~laEa~~l~~~~lGl~~~~~~~~~~~w~~g~~~S~l~~~~~~~l~~~d~ 251 (497)
T 2p4q_A 172 DGEPCCEWVGPAGAGHYVKMVHNGIEYGDMQLICEAYDIMKRLGGFTDKEISDVFAKWNNGVLDSFLVEITRDILKFDDV 251 (497)
T ss_dssp TTEESCCCCEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTTTTCBHHHHHHHHHHTCBCT
T ss_pred CCCCceEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHhcCCccccHHHHHHHHHHhcCCC
Confidence 46799999999999999999999999999999999999999745999999999999999999999999999998887775
Q ss_pred CCCcchhhhccccCCCcchHHHHHHHHhcCCCchhhHHHHHHHhhccCchHHHHHHhhcCCCC
Q psy9637 424 DGAPLVEKIKDYAGQKGTGKWTAISALDYGVPVTLIGESVFSRCLSSLFDERQKASQVLQGPN 486 (490)
Q Consensus 424 ~~~~~l~~i~~~~~~~g~g~w~~~~a~~~~~p~~~i~~a~~~r~~s~~~~~r~~~~~~~~~~~ 486 (490)
++.+.+|.|.|.++|||||+|+++.|.++|+|+|++.+|+|.|+.|.+|++|..+++.+.+|.
T Consensus 252 ~~~~~vd~i~D~~~~KgtG~~~~~~A~~~Gv~~P~~~~av~ar~~s~~k~~r~~~~~~~~gp~ 314 (497)
T 2p4q_A 252 DGKPLVEKIMDTAGQKGTGKWTAINALDLGMPVTLIGEAVFARCLSALKNERIRASKVLPGPE 314 (497)
T ss_dssp TSSBGGGGSCCCCCCCSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHCHHHHHHHHHHCCCCC
T ss_pred CCccHHHHHHHhhccchHHHHHHHHHHHcCCCCchHHHHHHHHHhhcchhhHHHHhhhcCCCC
Confidence 566899999999999999999999999999999999999999999999999999999998885
|
| >2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=7.2e-25 Score=232.63 Aligned_cols=143 Identities=59% Similarity=1.015 Sum_probs=135.2
Q ss_pred CCCCcceeecCCCCcchhHHhhhhHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhccCcchhHHHHHHHHHhcccCC
Q psy9637 344 GSEPCCDWVGEQGAGHFVKMVHNGIEYGDMQLICEAYHLMTGALGMSHDEMSAVFEDWNKGELDSFLIEITKDILKFKDT 423 (490)
Q Consensus 344 ~~~~c~~~~g~~g~gh~vkmvhngiey~~m~~~~E~~~~~~~~~~~~~~~~~~~~~~w~~g~~~s~l~~~~~~~~~~~~~ 423 (490)
+|+||+.|+|+.|+||++||+||+|+|++|++++|++.+++..+|++++++.++++.||+|++.||+++++..+++.+|.
T Consensus 177 dGe~~v~~~g~~G~g~~~Kl~~N~~~~~~~~~laEa~~l~~~~lGl~~~~~~~l~~~w~~g~~~s~l~~~~~~~l~~~d~ 256 (480)
T 2zyd_A 177 DGEPCVTYIGADGAGHYVKMVHNGIEYGDMQLIAEAYSLLKGGLNLTNEELAQTFTEWNNGELSSYLIDITKDIFTKKDE 256 (480)
T ss_dssp TSCBSBCCCBSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTTCBHHHHHHHHHHHCBCT
T ss_pred CCCceEEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhcCCCcccHHHHHHHHHHhcCCC
Confidence 47899999999999999999999999999999999999999745999999999999999999999999999999976665
Q ss_pred CCCcchhhhccccCCCcchHHHHHHHHhcCCCchhhHHHHHHHhhccCchHHHHHHhhcCCCC
Q psy9637 424 DGAPLVEKIKDYAGQKGTGKWTAISALDYGVPVTLIGESVFSRCLSSLFDERQKASQVLQGPN 486 (490)
Q Consensus 424 ~~~~~l~~i~~~~~~~g~g~w~~~~a~~~~~p~~~i~~a~~~r~~s~~~~~r~~~~~~~~~~~ 486 (490)
.+.+.+|.|.|.+++||||+|+++.|.++++|+|++.++++.|++|.+|++|..+++.+.+|.
T Consensus 257 ~~~~~v~~i~D~~~~k~tG~~~~~~A~~~gv~~Pi~~~av~ar~~s~~k~~R~~~~~~~~g~~ 319 (480)
T 2zyd_A 257 DGNYLVDVILDEAANKGTGKWTSQSALDLGEPLSLITESVFARYISSLKDQRVAASKVLSGPQ 319 (480)
T ss_dssp TSSBGGGGBCCCCCCCSCTTHHHHHHHHHTCCCHHHHHHHHHHHHHTCHHHHHHHHTTCCCCC
T ss_pred CCcchHHHHHHHhcCchHHHHHHHHHHHcCCCCchHHHHHHHHhhhcchhhhHHhhcccCCCC
Confidence 555899999999999999999999999999999999999999999999999999999998885
|
| >2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.2e-24 Score=231.00 Aligned_cols=143 Identities=62% Similarity=1.034 Sum_probs=135.0
Q ss_pred CCCCcceeecCCCCcchhHHhhhhHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhccCcchhHHHHHHHHHhcccCC
Q psy9637 344 GSEPCCDWVGEQGAGHFVKMVHNGIEYGDMQLICEAYHLMTGALGMSHDEMSAVFEDWNKGELDSFLIEITKDILKFKDT 423 (490)
Q Consensus 344 ~~~~c~~~~g~~g~gh~vkmvhngiey~~m~~~~E~~~~~~~~~~~~~~~~~~~~~~w~~g~~~s~l~~~~~~~~~~~~~ 423 (490)
+++||+.|+|+.|+||++||+||+++|++|++++|++.+++..+|++.+++.+++..||+|++.||+++++..++..+|.
T Consensus 168 dge~~~~~~g~~g~g~~~Kl~~N~~~~~~~~~laEa~~l~~~~~Gl~~~~~~~l~~~w~~g~~~s~l~~~~~~~l~~~d~ 247 (474)
T 2iz1_A 168 DGKPCVAYMGANGAGHYVKMVHNGIEYGDMQLIAESYDLLKRILGLSNAEIQAIFEEWNEGELDSYLIEITKEVLKRKDD 247 (474)
T ss_dssp TCCBSBCCCBSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTTTTTCBHHHHHHHHHTTCBCS
T ss_pred CCCceEEEECCccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhcCCCccccHHHhhhhHhhcCCC
Confidence 57899999999999999999999999999999999999999756999999999999999999999999999999876664
Q ss_pred -CCCcchhhhccccCCCcchHHHHHHHHhcCCCchhhHHHHHHHhhccCchHHHHHHhhcCCCC
Q psy9637 424 -DGAPLVEKIKDYAGQKGTGKWTAISALDYGVPVTLIGESVFSRCLSSLFDERQKASQVLQGPN 486 (490)
Q Consensus 424 -~~~~~l~~i~~~~~~~g~g~w~~~~a~~~~~p~~~i~~a~~~r~~s~~~~~r~~~~~~~~~~~ 486 (490)
.|.+.+|.|.|.+++||||+|+++.|.++++|+|++.++++.|++|.+|++|..+++.+.+|.
T Consensus 248 ~~g~~~vd~i~D~~~~k~tG~~~~~~A~~~gv~~P~~~~av~ar~~s~~k~~r~~~~~~~~g~~ 311 (474)
T 2iz1_A 248 EGEGYIVDKILDKAGNKGTGKWTSESALDLGVPLPLITESVFARYISTYKDERVKASKVLSGPA 311 (474)
T ss_dssp SSSSBGGGGBCSCCCCCSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHCHHHHHHHHHHCCCCC
T ss_pred CCChhHHHHHHHhhcccchHHHHHHHHHHcCCCCchHHHHHHHHHhhhhhhhhHHhhhccCCCC
Confidence 455899999999999999999999999999999999999999999999999999999998886
|
| >3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.1e-23 Score=219.59 Aligned_cols=273 Identities=14% Similarity=0.112 Sum_probs=213.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcc---------------cCCCCeeccCCHHHHHhhCCC
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANE---------------AKGTNIIGAHSLEELVKNLKK 68 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g---------------~~~~~i~~~~s~~e~v~~l~~ 68 (490)
|.+|+|||+|.||.++|..|+++||+|+++|.++++++.+.+.. ....++..++++.+.+..
T Consensus 21 m~~IaViGlGYVGLp~A~~~A~~G~~V~g~Did~~kV~~ln~G~~pi~Epgl~ell~~~~~~g~l~~tt~~~~ai~~--- 97 (444)
T 3vtf_A 21 MASLSVLGLGYVGVVHAVGFALLGHRVVGYDVNPSIVERLRAGRPHIYEPGLEEALGRALSSGRLSFAESAEEAVAA--- 97 (444)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEECSSHHHHHHT---
T ss_pred CCEEEEEccCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHCCCCCCCCCCHHHHHHHHHHcCCeeEEcCHHHHHhc---
Confidence 56899999999999999999999999999999999998876421 113456778889988887
Q ss_pred CcEEEEecCCCc---------hHHHHHHhhcccCC---CCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCCCcccc
Q psy9637 69 PRRVMMLVKAGS---------AVDDFIDKLVPLLE---KGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGGEDGA 136 (490)
Q Consensus 69 ~dvIil~vp~~~---------~v~~vl~~l~~~l~---~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg~~~a 136 (490)
+|++|+|||++. .++++.+.+.+.|+ ++++||.-||+.|.++++....+.++...-.|..+...|+..
T Consensus 98 ad~~~I~VpTP~~~d~~~Dl~~v~~a~~~I~~~l~~~~~g~lVV~eSTVppGtte~~~~~~l~~~~~~~~f~v~~~PErl 177 (444)
T 3vtf_A 98 TDATFIAVGTPPAPDGSADLRYVEAAARAVGRGIRAKGRWHLVVVKSTVPPGTTEGLVARAVAEEAGGVKFSVASNPEFL 177 (444)
T ss_dssp SSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHHHHCSCCEEEECSCCCTTTTTTHHHHHHHTTTTTCCCEEEECCCCC
T ss_pred CCceEEEecCCCCCCCCCCcHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCCchHHHHHHHHHHHhCCCCCceeecCcccc
Confidence 899999998752 46677777777764 689999999999999988775444433335677777888888
Q ss_pred ccCCc---------cCCCC-CcchHHHHHHHHHhhCCceeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9637 137 RYGPS---------LMPGG-NPAAWPALKPIFQKLNPSFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQ 206 (490)
Q Consensus 137 ~~G~~---------im~GG-~~~a~~~v~~ll~~l~~~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~ 206 (490)
+.|.. +++|+ ++++.+.++.+++.+...++.+++. .|+++|++.|++.+.+++.++|...++++
T Consensus 178 ~eG~a~~d~~~~~riViG~~~~~a~~~~~~ly~~~~~~~~~~~~~------~AE~~Kl~eN~~ravnIa~~NEla~ice~ 251 (444)
T 3vtf_A 178 REGSALEDFFKPDRIVIGAGDERAASFLLDVYKAVDAPKLVMKPR------EAELVKYASNVFLALKISFANEVGLLAKR 251 (444)
T ss_dssp CTTSHHHHHHSCSCEEEEESSHHHHHHHHHHTTTSCSCEEEECHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCccccccccCCcEEEcCCCHHHHHHHHHHHhccCCCEEEechh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88852 35565 5567788899998887766665543 68999999999999999999999999999
Q ss_pred HHHHhCCCCCHHHHHHHHhcccchhhHhHhHhHHhhccCcccccccCChhHHHHHHHHHHHHHHHHHHHHHcCCCchHHH
Q psy9637 207 AAEIHGWKLNYGGIALMWRGGCIIRSVFLGNIKAAFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSALLGIPTPAFA 286 (490)
Q Consensus 207 a~~~~~~Gld~~~v~~i~~~g~~~~s~~l~~i~~~~~~~~~~~~~~~~~~f~~~l~~~~kDl~~~~~~A~~~gv~~P~~~ 286 (490)
. |+|..++++.+... +++....+.|+++..-.++.||...++..|++.|++.+++.
T Consensus 252 ~------GiDv~eV~~a~~~d------------------~rig~~~l~PG~G~GG~CipkD~~~L~~~a~~~g~~~~li~ 307 (444)
T 3vtf_A 252 L------GVDTYRVFEAVGLD------------------KRIGRHYFGAGLGFGGSCFPKDTLAFIRFGESLGLEMAISK 307 (444)
T ss_dssp T------TCCHHHHHHHHHTS------------------TTSCSTTCCCSSCCCTTTHHHHHHHHHHHHHHTTCCCHHHH
T ss_pred c------CCCHHHHHHHhccC------------------CCCCCCCCCCCCCCCCcccCcCHHHHHHHHHhcCCCHHHHH
Confidence 9 99999999987532 23333445565544556789999999999999999999999
Q ss_pred HHHHHHHHHHhCCChhhhHHHHHHhhcc
Q psy9637 287 TALAFYDGYRSKRLPANLLQAQRDYFGA 314 (490)
Q Consensus 287 aa~~~~~~~~~~g~~~~~~~a~rd~fga 314 (490)
++.+.=+. .+...++.+.+.++.
T Consensus 308 a~~~iN~~-----~~~~vv~~l~~~~~~ 330 (444)
T 3vtf_A 308 AVLRVNEY-----MPRYAVQLLEERLGG 330 (444)
T ss_dssp HHHHHHHH-----HHHHHHHHHHHHHTC
T ss_pred hhHHHHHH-----HHHHHHHHHHHHccc
Confidence 88776443 345566666666653
|
| >2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=3e-23 Score=220.61 Aligned_cols=143 Identities=76% Similarity=1.291 Sum_probs=134.4
Q ss_pred CCCCcceeecCCCCcchhHHhhhhHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhccCcchhHHHHHHHHHhcccCC
Q psy9637 344 GSEPCCDWVGEQGAGHFVKMVHNGIEYGDMQLICEAYHLMTGALGMSHDEMSAVFEDWNKGELDSFLIEITKDILKFKDT 423 (490)
Q Consensus 344 ~~~~c~~~~g~~g~gh~vkmvhngiey~~m~~~~E~~~~~~~~~~~~~~~~~~~~~~w~~g~~~s~l~~~~~~~~~~~~~ 423 (490)
+++||+.|+|+.|+||++||+||+++|++|++++|++.+++..+|++.+++.+++..||.|++.||+++++..++.++|.
T Consensus 165 d~~~~~~~~g~~g~g~~~Kl~~N~~~~~~~~~i~Ea~~l~~~~~G~~~~~~~~~~~~w~~g~~~S~l~~~~~~~l~~~d~ 244 (482)
T 2pgd_A 165 TGEPCCDWVGDDGAGHFVKMVHNGIEYGDMQLICEAYHLMKDVLGLGHKEMAKAFEEWNKTELDSFLIEITASILKFQDA 244 (482)
T ss_dssp TSCBSCCCCEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTTTTTCBHHHHHHHHHHHCBCT
T ss_pred CCCcceEEECCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHhcCCCcCchHHHHHhHHhhccCC
Confidence 35799999999999999999999999999999999999999844999999999999999999999999999998877665
Q ss_pred CCCcchhhhccccCCCcchHHHHHHHHhcCCCchhhHHHHHHHhhccCchHHHHHHhhcCCCC
Q psy9637 424 DGAPLVEKIKDYAGQKGTGKWTAISALDYGVPVTLIGESVFSRCLSSLFDERQKASQVLQGPN 486 (490)
Q Consensus 424 ~~~~~l~~i~~~~~~~g~g~w~~~~a~~~~~p~~~i~~a~~~r~~s~~~~~r~~~~~~~~~~~ 486 (490)
++...+|.|.|.+++||||+|+++.|.++|||+|++.++++.|+.|.+|++|..+++.+.+|.
T Consensus 245 ~~~~~ld~i~d~~~~k~t~~~~~~~A~~~Gv~~P~i~~av~~~~~s~~k~~r~~~~~~~~g~~ 307 (482)
T 2pgd_A 245 DGKHLLPKIRDSAGQKGTGKWTAISALEYGVPVTLIGEAVFARCLSSLKDERIQASKKLKGPQ 307 (482)
T ss_dssp TSSBSGGGSCCCCCCCSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHCHHHHHHHHHHCCCCC
T ss_pred CCCeeecccccccccccHHHHHHHHHHHcCCCcchHHHHHHHHhhhhhhhHHHHHhhhcCCCC
Confidence 556899999999999999999999999999999999999999999999999999999998885
|
| >1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.89 E-value=3.6e-23 Score=219.67 Aligned_cols=142 Identities=37% Similarity=0.641 Sum_probs=134.0
Q ss_pred CCCCcceeecCCCCcchhHHhhhhHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhc-cCcchhHHHHHHHHHhcccC
Q psy9637 344 GSEPCCDWVGEQGAGHFVKMVHNGIEYGDMQLICEAYHLMTGALGMSHDEMSAVFEDWN-KGELDSFLIEITKDILKFKD 422 (490)
Q Consensus 344 ~~~~c~~~~g~~g~gh~vkmvhngiey~~m~~~~E~~~~~~~~~~~~~~~~~~~~~~w~-~g~~~s~l~~~~~~~~~~~~ 422 (490)
+++||+.|+|+.|+||++||+||+++|++|++++|++.+++. +|++.+++.+++..|| .|.+.||+++++..+++.+|
T Consensus 167 dg~~~v~~~g~~G~g~~~Kl~~N~~~~~~~~~i~Ea~~l~~~-~G~~~~~~~~l~~~w~~~g~~~s~l~~~~~~~l~~~d 245 (478)
T 1pgj_A 167 DGRPCVTMNGSGGAGSCVKMYHNSGEYAILQIWGEVFDILRA-MGLNNDEVAAVLEDWKSKNFLKSYMLDISIAAARAKD 245 (478)
T ss_dssp TSCBSCCCCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCCHHHHHHHHHHHHHTSTTCBHHHHHHHHHHHCBC
T ss_pred CCCeeEEEeCCchHHHHHhhHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHhccCCCcCchHHHhhchhhhcCC
Confidence 368999999999999999999999999999999999999995 8999999999999999 99999999999999887666
Q ss_pred CCCCcchhhhccccCCCcchHHHHHHHHhcCCCchhhHHHHHHHhhccCchHHHHHHhhcCCCC
Q psy9637 423 TDGAPLVEKIKDYAGQKGTGKWTAISALDYGVPVTLIGESVFSRCLSSLFDERQKASQVLQGPN 486 (490)
Q Consensus 423 ~~~~~~l~~i~~~~~~~g~g~w~~~~a~~~~~p~~~i~~a~~~r~~s~~~~~r~~~~~~~~~~~ 486 (490)
..|.+.+|.|.|.+++||||+|+++.|.++|||+|++.+||++|++|..|++|+.+++.+.+|.
T Consensus 246 ~~G~~~ld~i~D~~~~kgtg~~~~~~A~~~Gv~~Pi~~~av~~r~ls~~~~~r~~~~~~l~~~~ 309 (478)
T 1pgj_A 246 KDGSYLTEHVMDRIGSKGTGLWSAQEALEIGVPAPSLNMAVVSRQFTMYKTERQANASNAPGIT 309 (478)
T ss_dssp TTSSBGGGGBCCCCCCCSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHTHHHHHHHHHHSTTTT
T ss_pred CCChhHHHHHHHHhcCccHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCCHHHHHHHhcCCCC
Confidence 5555799999999999999999999999999999999999999999999999999999998885
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=99.88 E-value=3.8e-22 Score=199.40 Aligned_cols=267 Identities=14% Similarity=0.096 Sum_probs=186.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCC--------CeeccCCHHHHHhhCCCCcEEEEe
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGT--------NIIGAHSLEELVKNLKKPRRVMML 75 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~--------~i~~~~s~~e~v~~l~~~dvIil~ 75 (490)
||||+|||+|.||..+|.+|+++||+|++|||++++.+.+.+.+.... ++. ..+..++.+.++.+|+||+|
T Consensus 3 ~m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~vi~~ 81 (316)
T 2ew2_A 3 AMKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWPAHIEAIRKNGLIADFNGEEVVANLP-IFSPEEIDHQNEQVDLIIAL 81 (316)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHCEEEEETTEEEEECCC-EECGGGCCTTSCCCSEEEEC
T ss_pred CCeEEEECcCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhCCEEEEeCCCeeEecce-eecchhhcccCCCCCEEEEE
Confidence 579999999999999999999999999999999999998877643200 011 11344554434459999999
Q ss_pred cCCCchHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHc----cccccccCCCCCc--cccccCC-ccC--CCC
Q psy9637 76 VKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAK----GLLYVGCGVSGGE--DGARYGP-SLM--PGG 146 (490)
Q Consensus 76 vp~~~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~----gi~~ld~~vsGg~--~~a~~G~-~im--~GG 146 (490)
||+. .++++++++.+.+.++.+||+++|+.. ......+.+.+. |..+++++++|.. .....|. .++ .++
T Consensus 82 v~~~-~~~~v~~~l~~~l~~~~~iv~~~~g~~-~~~~l~~~~~~~~vi~g~~~~~~~~~~p~~~~~~~~g~~~i~~~~~~ 159 (316)
T 2ew2_A 82 TKAQ-QLDAMFKAIQPMITEKTYVLCLLNGLG-HEDVLEKYVPKENILVGITMWTAGLEGPGRVKLLGDGEIELENIDPS 159 (316)
T ss_dssp SCHH-HHHHHHHHHGGGCCTTCEEEECCSSSC-THHHHTTTSCGGGEEEEEECCCCEEEETTEEEECSCCCEEEEESSGG
T ss_pred eccc-cHHHHHHHHHHhcCCCCEEEEecCCCC-cHHHHHHHcCCccEEEEEeeeeeEEcCCCEEEEecCCcEEEeecCCC
Confidence 9984 889999999999999999999998764 223333333333 5556677777632 2234455 443 456
Q ss_pred CcchHHHHHHHHHhhCCceeeCCCCCCCCCCHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHH
Q psy9637 147 NPAAWPALKPIFQKLNPSFETSAPTPKPQRDKKEFLENIRQALY---------------------ASKIVSYAQGFMLMR 205 (490)
Q Consensus 147 ~~~a~~~v~~ll~~l~~~~~~~g~~g~~~g~~a~~~Kll~n~l~---------------------~~~~~~~aE~~~la~ 205 (490)
+++.++.++++|+.++..+.+.++.. .+.+.|++.|... .....++.|++.+++
T Consensus 160 ~~~~~~~~~~ll~~~g~~~~~~~d~~-----~~~~~Kl~~N~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~E~~~la~ 234 (316)
T 2ew2_A 160 GKKFALEVVDVFQKAGLNPSYSSNVR-----YSIWRKACVNGTLNGLCTILDCNIAEFGALPVSESLVKTLISEFAAVAE 234 (316)
T ss_dssp GHHHHHHHHHHHHHTTCCEEECTTHH-----HHHHHHHHHHTTHHHHHHHHTCCHHHHHTSTTHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHhCCCCcEEchhHH-----HHHHHHHHHhhhHHHHHHHhCCcHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence 78889999999999998877766543 5789999999642 456788899999999
Q ss_pred HHHHHhCCCCCH--HHHHHHHhcccchhhHhHhHhHHhhccC-cccccccC-ChhHHHHHHHHHHHHHHHHHHHHHcCCC
Q psy9637 206 QAAEIHGWKLNY--GGIALMWRGGCIIRSVFLGNIKAAFDKN-PALSNLLL-DPFFKDAIHATQSSWRAVVSQSALLGIP 281 (490)
Q Consensus 206 ~a~~~~~~Gld~--~~v~~i~~~g~~~~s~~l~~i~~~~~~~-~~~~~~~~-~~~f~~~l~~~~kDl~~~~~~A~~~gv~ 281 (490)
+. |+++ +.+.+.+...+- . . ...++ +.+. .++ ..++ ..+ ..++++.+++.|+++|++
T Consensus 235 ~~------G~~~~~~~~~~~~~~~~~-~--~------~~~~~~~sm~-~d~~~~g~--~~E-~~~~~~~~~~~a~~~gv~ 295 (316)
T 2ew2_A 235 KE------AIYLDQAEVYTHIVQTYD-P--N------GIGLHYPSMY-QDLIKNHR--LTE-IDYINGAVWRKGQKYNVA 295 (316)
T ss_dssp HT------TCCCCHHHHHHHHHHTTC-T--T------TTTTSCCHHH-HHHTTTCC--CCS-GGGTHHHHHHHHHHHTCC
T ss_pred Hc------CCCCChHHHHHHHHHHhc-c--c------cCCCCCcHHH-HHHHHcCC--cch-HHHHhhHHHHHHHHhCCC
Confidence 88 7776 456565532110 0 0 00001 0010 011 1111 112 578999999999999999
Q ss_pred chHHHHHHHHHHHHHh
Q psy9637 282 TPAFATALAFYDGYRS 297 (490)
Q Consensus 282 ~P~~~aa~~~~~~~~~ 297 (490)
+|+++.+++.++.+..
T Consensus 296 ~P~~~~~~~~~~~~~~ 311 (316)
T 2ew2_A 296 TPFCAMLTQLVHGKEE 311 (316)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999987654
|
| >3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.5e-22 Score=206.98 Aligned_cols=274 Identities=12% Similarity=0.035 Sum_probs=192.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCC---------CCeeccCCHHHHHhhCCCCcEEEE
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKG---------TNIIGAHSLEELVKNLKKPRRVMM 74 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~---------~~i~~~~s~~e~v~~l~~~dvIil 74 (490)
+|||+|||+|.||..+|..|+++||+|++|||++++++.+.+.+... .++..+++++++++. +|+||+
T Consensus 29 ~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~~~~~~~i~~~~~~~~~l~g~~l~~~i~~t~d~~ea~~~---aDvVil 105 (356)
T 3k96_A 29 KHPIAILGAGSWGTALALVLARKGQKVRLWSYESDHVDEMQAEGVNNRYLPNYPFPETLKAYCDLKASLEG---VTDILI 105 (356)
T ss_dssp CSCEEEECCSHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHSSBTTTBTTCCCCTTEEEESCHHHHHTT---CCEEEE
T ss_pred CCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCcccCCCCccCCCeEEECCHHHHHhc---CCEEEE
Confidence 47999999999999999999999999999999999999988765321 235567888888876 899999
Q ss_pred ecCCCchHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHH----ccccccccCCCCCccccccCC-ccCCCCCcc
Q psy9637 75 LVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEA----KGLLYVGCGVSGGEDGARYGP-SLMPGGNPA 149 (490)
Q Consensus 75 ~vp~~~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~----~gi~~ld~~vsGg~~~a~~G~-~im~GG~~~ 149 (490)
+||+ ..++++++++.+.++++.+||+++++....+....+.+.+ ..+.++..|.+..+..+.... .++.+.+++
T Consensus 106 aVp~-~~~~~vl~~i~~~l~~~~ivvs~~kGi~~~t~~~se~i~~~l~~~~~~vlsgP~~a~ev~~g~pt~~via~~~~~ 184 (356)
T 3k96_A 106 VVPS-FAFHEVITRMKPLIDAKTRIAWGTKGLAKGSRLLHEVVATELGQVPMAVISGPSLATEVAANLPTAVSLASNNSQ 184 (356)
T ss_dssp CCCH-HHHHHHHHHHGGGCCTTCEEEECCCSCBTTTBCHHHHHHHHHCSCCEEEEESSCCHHHHHTTCCEEEEEEESCHH
T ss_pred CCCH-HHHHHHHHHHHHhcCCCCEEEEEeCCCCcCccCHHHHHHHHcCCCCEEEEECccHHHHHHcCCCeEEEEecCCHH
Confidence 9998 5899999999999999999999999776554211233322 334456666554433332223 344566888
Q ss_pred hHHHHHHHHHhhCCceeeCCCC-CCC------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Q psy9637 150 AWPALKPIFQKLNPSFETSAPT-PKP------------QRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLN 216 (490)
Q Consensus 150 a~~~v~~ll~~l~~~~~~~g~~-g~~------------~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld 216 (490)
..++++++|+..+.+++...+. |.. .| ...-+|+..|+..+....+++|+..++++. |.+
T Consensus 185 ~~~~v~~lf~~~~~rv~~~~Di~g~e~~galkNviaia~G-~~~gl~~g~N~~aal~~~~l~E~~~l~~a~------G~~ 257 (356)
T 3k96_A 185 FSKDLIERLHGQRFRVYKNDDMIGVELCGSVKNILAIATG-ISDGLKLGSNARAALITRGLTEMGRLVSVF------GGK 257 (356)
T ss_dssp HHHHHHHHHCCSSEEEEEESCHHHHHHHHHHHHHHHHHHH-HHHHTTCCHHHHHHHHHHHHHHHHHHHHHT------TCC
T ss_pred HHHHHHHHhCCCCeeEEEeCCHHHHHHHHHHHHHHHHHHH-HHhhccCCchHHHHHHHHHHHHHHHHHHHh------CCC
Confidence 8999999999777666554332 100 00 112235566778888999999999999999 999
Q ss_pred HHHHHHHHhcccchhhHhHhHhHHhhccCcccccccCCh-hHH------HHHHHHHHHHHHHHHHHHHcCCCchHHHHHH
Q psy9637 217 YGGIALMWRGGCIIRSVFLGNIKAAFDKNPALSNLLLDP-FFK------DAIHATQSSWRAVVSQSALLGIPTPAFATAL 289 (490)
Q Consensus 217 ~~~v~~i~~~g~~~~s~~l~~i~~~~~~~~~~~~~~~~~-~f~------~~l~~~~kDl~~~~~~A~~~gv~~P~~~aa~ 289 (490)
++++...-. -.+++..+.+.+.+|.++...+-.. .+. ..+....++.+.+.+.++++|+++|++++++
T Consensus 258 ~~t~~gl~g-----~gDl~~tc~s~~sRN~~~G~~l~~g~~~~~~~~~~~~~~eG~~t~~~~~~la~~~~v~~Pi~~~v~ 332 (356)
T 3k96_A 258 QETLTGLAG-----LGDLVLTCTDNQSRNRRFGLALGEGVDKKEAQQAIGQAIEGLYNTDQVHALAQKHAIEMPLTFQVH 332 (356)
T ss_dssp HHHHTSTTT-----HHHHHHHHHCTTCHHHHHHHHHHHTCCHHHHHHHHCSCCSHHHHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred hHhhcccch-----hhHHHHhccCCCCccHHHHHHHHCCCCHHHHHHHcCCccchHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 998886421 1234334443333443332222100 111 1223567899999999999999999999999
Q ss_pred HHHH
Q psy9637 290 AFYD 293 (490)
Q Consensus 290 ~~~~ 293 (490)
+++.
T Consensus 333 ~il~ 336 (356)
T 3k96_A 333 RILH 336 (356)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8875
|
| >3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=99.88 E-value=7.3e-23 Score=198.82 Aligned_cols=178 Identities=15% Similarity=0.161 Sum_probs=143.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHH--------------HHHHHHcccCCCCeeccCCHHHHHhhCCCC
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAK--------------VDSFLANEAKGTNIIGAHSLEELVKNLKKP 69 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~--------------~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~ 69 (490)
.++|||||+|.||.+||.+|+++||+|++|||++++ .+.+.+... ...+.++.++++. +
T Consensus 19 ~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~e~~~~---a 91 (245)
T 3dtt_A 19 GMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDPKATLARAEPDAMGAPPFSQWLPEHP----HVHLAAFADVAAG---A 91 (245)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHTCC-------CCHHHHGGGST----TCEEEEHHHHHHH---C
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCChhhhhhhhhhhhhcchhhhHHHhhcC----ceeccCHHHHHhc---C
Confidence 478999999999999999999999999999999987 455543311 1246788888887 9
Q ss_pred cEEEEecCCCchHHHHHHhh-cccCCCCCEEEcCCCC-----------ChHHHHHHHHHHHH--------ccccccccCC
Q psy9637 70 RRVMMLVKAGSAVDDFIDKL-VPLLEKGDIIIDGGNS-----------EYQDTDRRSKALEA--------KGLLYVGCGV 129 (490)
Q Consensus 70 dvIil~vp~~~~v~~vl~~l-~~~l~~g~iiId~s~~-----------~~~~~~~~~~~l~~--------~gi~~ld~~v 129 (490)
|+||+|||+. .+.+++.++ .+.+ ++++|||++|. .|.+.....+.+++ +++.++++|+
T Consensus 92 DvVilavp~~-~~~~~~~~i~~~~l-~g~ivi~~s~~~~~~~G~~~t~~~~~~~~~~~~l~~~l~~~~vv~~~~~~~a~v 169 (245)
T 3dtt_A 92 ELVVNATEGA-SSIAALTAAGAENL-AGKILVDIANPLDFSHGMPPTLNPVNTDSLGEQIQRTFPEAKVVKTLNTMNASL 169 (245)
T ss_dssp SEEEECSCGG-GHHHHHHHHCHHHH-TTSEEEECCCCEECTTCSSCEESSCSSCCHHHHHHHHSTTSEEEECSTTSCHHH
T ss_pred CEEEEccCcH-HHHHHHHHhhhhhc-CCCEEEECCCCCCCcCCccccccCCCCccHHHHHHHHCCCCeEEEeecccCHHH
Confidence 9999999996 666777777 6777 89999999953 33333333444444 3899999999
Q ss_pred CCCccccccCC-ccCCCC-CcchHHHHHHHHHhhCC-ceeeCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q psy9637 130 SGGEDGARYGP-SLMPGG-NPAAWPALKPIFQKLNP-SFETSAPTPKPQRDKKEFLENIRQALYASKIV 195 (490)
Q Consensus 130 sGg~~~a~~G~-~im~GG-~~~a~~~v~~ll~~l~~-~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~ 195 (490)
++++..++.|+ .+|++| +++++++++++|+.++. .++++|+.| .+..+|+++|++....+.
T Consensus 170 ~~~~~~a~~g~~~~~v~g~d~~~~~~v~~ll~~~g~~~~~~~G~~g-----~a~~~k~~~~~~~~l~~~ 233 (245)
T 3dtt_A 170 MVDPGRAAGGDHSVFVSGNDAAAKAEVATLLKSLGHQDVIDLGDIT-----TARGAEMLLPVWIRLWGA 233 (245)
T ss_dssp HHCGGGTGGGCCCEEEECSCHHHHHHHHHHHHHTTCCCEEEEESGG-----GHHHHHTTHHHHHHHHHH
T ss_pred hcCccccCCCCeeEEEECCCHHHHHHHHHHHHHcCCCceeccCcHH-----HHHHhhhhHHHHHHHHHH
Confidence 99999998888 788766 57999999999999996 468889875 678999999999887743
|
| >1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=3.2e-22 Score=197.79 Aligned_cols=257 Identities=13% Similarity=0.097 Sum_probs=178.7
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCC--ee-ccCCHHHHHhhCCCCcEEEEecCCCch
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTN--II-GAHSLEELVKNLKKPRRVMMLVKAGSA 81 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~--i~-~~~s~~e~v~~l~~~dvIil~vp~~~~ 81 (490)
|||+|||+|.||..+|.+|+++||+|++|||++++.+.+...+..+.. .. ..++. +.+.. +|+||+|||+. .
T Consensus 1 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~---~d~vi~~v~~~-~ 75 (291)
T 1ks9_A 1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTANDP-DFLAT---SDLLLVTLKAW-Q 75 (291)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEEEEEECTTSCEEEEEEEESCH-HHHHT---CSEEEECSCGG-G
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCCEEEEEcCccceeeEEEEcCCCceeeeeeeecCc-cccCC---CCEEEEEecHH-h
Confidence 489999999999999999999999999999998765544322211110 01 13443 45555 89999999996 7
Q ss_pred HHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHH--ccccccccCCCCC-ccccccCC-ccCC-CCCcchHHHHHH
Q psy9637 82 VDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEA--KGLLYVGCGVSGG-EDGARYGP-SLMP-GGNPAAWPALKP 156 (490)
Q Consensus 82 v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~--~gi~~ld~~vsGg-~~~a~~G~-~im~-GG~~~a~~~v~~ 156 (490)
++++++++.+.+.++.+||+++|+.. ......+.+.+ .|..+.++...++ +..+..|. .+++ +++++.++++++
T Consensus 76 ~~~v~~~l~~~l~~~~~vv~~~~g~~-~~~~l~~~~~~~~~g~~~~~~~~~~p~~~~~~~g~~~i~~~~~~~~~~~~~~~ 154 (291)
T 1ks9_A 76 VSDAVKSLASTLPVTTPILLIHNGMG-TIEELQNIQQPLLMGTTTHAARRDGNVIIHVANGITHIGPARQQDGDYSYLAD 154 (291)
T ss_dssp HHHHHHHHHTTSCTTSCEEEECSSSC-TTGGGTTCCSCEEEEEECCEEEEETTEEEEEECCCEEEEESSGGGTTCTHHHH
T ss_pred HHHHHHHHHhhCCCCCEEEEecCCCC-cHHHHHHhcCCeEEEEEeEccEEcCCEEEEecccceEEccCCCCcchHHHHHH
Confidence 89999999999999999999988652 22222222222 3444434444443 33445666 4543 566778899999
Q ss_pred HHHhhCCceeeCCCCCCCCCCHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHhCCCCCH-
Q psy9637 157 IFQKLNPSFETSAPTPKPQRDKKEFLENIRQALY------------------ASKIVSYAQGFMLMRQAAEIHGWKLNY- 217 (490)
Q Consensus 157 ll~~l~~~~~~~g~~g~~~g~~a~~~Kll~n~l~------------------~~~~~~~aE~~~la~~a~~~~~~Gld~- 217 (490)
+|+.++..+.+.++.+ .+.+.|++.|... .....++.|++.++++. |+++
T Consensus 155 ll~~~g~~~~~~~~~~-----~~~~~Kl~~n~~~n~~tal~~~~~g~~~~~~~~~~~~~~E~~~va~a~------G~~~~ 223 (291)
T 1ks9_A 155 ILQTVLPDVAWHNNIR-----AELWRKLAVNCVINPLTAIWNCPNGELRHHPQEIMQICEEVAAVIERE------GHHTS 223 (291)
T ss_dssp HHHTTSSCEEECTTHH-----HHHHHHHHHHHHHHHHHHHTTCCGGGGGGCHHHHHHHHHHHHHHHHHH------TCCCC
T ss_pred HHHhcCCCCeecHHHH-----HHHHHHHeeeeeecHHHHHHCCCchHHHhHHHHHHHHHHHHHHHHHHc------CCCCC
Confidence 9999999888877653 5689999999988 78889999999999999 8876
Q ss_pred -HHH----HHHHhcccchhhHhHhHhHHhhccCcccccccCChhHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHH
Q psy9637 218 -GGI----ALMWRGGCIIRSVFLGNIKAAFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSALLGIPTPAFATALAFY 292 (490)
Q Consensus 218 -~~v----~~i~~~g~~~~s~~l~~i~~~~~~~~~~~~~~~~~~f~~~l~~~~kDl~~~~~~A~~~gv~~P~~~aa~~~~ 292 (490)
+.+ .+++....-.+|.+++.+.... + .+ ...+.+.+++.|+++|+|+|+.+.+++++
T Consensus 224 ~~~~~~~~~~~~~~~~~~~ssm~~d~~~g~---~------------~e---~~~~~g~~~~~a~~~gv~~P~~~~~~~~~ 285 (291)
T 1ks9_A 224 AEDLRDYVMQVIDATAENISSMLQDIRALR---H------------TE---IDYINGFLLRRARAHGIAVPENTRLFEMV 285 (291)
T ss_dssp HHHHHHHHHHHHHHTTTCCCHHHHHHHTTC---C------------CS---GGGTHHHHHHHHHHHTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCChHHHHHHcCC---c------------cH---HHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 444 3333322222333333321110 0 01 12457789999999999999999999998
Q ss_pred HHHH
Q psy9637 293 DGYR 296 (490)
Q Consensus 293 ~~~~ 296 (490)
+...
T Consensus 286 ~~~e 289 (291)
T 1ks9_A 286 KRKE 289 (291)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8654
|
| >1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.84 E-value=3.4e-21 Score=195.42 Aligned_cols=263 Identities=12% Similarity=0.075 Sum_probs=173.7
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCC------CCeeccCCHHHHHhhCCCCcEEEEecCC
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKG------TNIIGAHSLEELVKNLKKPRRVMMLVKA 78 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~------~~i~~~~s~~e~v~~l~~~dvIil~vp~ 78 (490)
|||+|||+|.||..||.+|+++||+|++|||++++++.+.+.+... .++..++++++ +.. +|+||+|||+
T Consensus 15 ~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~-~~~---aDvVil~vk~ 90 (335)
T 1z82_A 15 MRFFVLGAGSWGTVFAQMLHENGEEVILWARRKEIVDLINVSHTSPYVEESKITVRATNDLEE-IKK---EDILVIAIPV 90 (335)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHSCBTTBTTCCCCSEEESCGGG-CCT---TEEEEECSCG
T ss_pred CcEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhCCcccCCCCeeeEEEeCCHHH-hcC---CCEEEEECCH
Confidence 7999999999999999999999999999999999999988765310 02345677777 655 8999999997
Q ss_pred CchHHHHHHhhcccCCCCCEEEcCCCCChHH-HHHHHHHHHHccccccccCCCCCccccc---cCC-c-cCCCCCcchHH
Q psy9637 79 GSAVDDFIDKLVPLLEKGDIIIDGGNSEYQD-TDRRSKALEAKGLLYVGCGVSGGEDGAR---YGP-S-LMPGGNPAAWP 152 (490)
Q Consensus 79 ~~~v~~vl~~l~~~l~~g~iiId~s~~~~~~-~~~~~~~l~~~gi~~ld~~vsGg~~~a~---~G~-~-im~GG~~~a~~ 152 (490)
.++++++.++.+ ++.+||+++|+.... .+...+.+.+.. . .++++.++|..+. .|. + +.+|++ + ++
T Consensus 91 -~~~~~v~~~l~~---~~~~vv~~~nGi~~~~~~~l~~~~~~~~-~-~~~~~~~~P~~~~~~~~g~~~~~~~g~~-~-~~ 162 (335)
T 1z82_A 91 -QYIREHLLRLPV---KPSMVLNLSKGIEIKTGKRVSEIVEEIL-G-CPYAVLSGPSHAEEVAKKLPTAVTLAGE-N-SK 162 (335)
T ss_dssp -GGHHHHHTTCSS---CCSEEEECCCCCCTTTCCCHHHHHHHHT-C-CCEEEEESSCCHHHHHTTCCEEEEEEET-T-HH
T ss_pred -HHHHHHHHHhCc---CCCEEEEEeCCCCCCccCcHHHHHHHHc-C-CceEEEECCccHHHHhCCCceEEEEEeh-h-HH
Confidence 699999988776 789999999865432 233344444332 2 4567777776654 454 3 334443 3 88
Q ss_pred HHHHHHHhhCCceeeCCCCCCCCCCHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHH
Q psy9637 153 ALKPIFQKLNPSFETSAPTPKPQRDKKEFLE--------------NIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYG 218 (490)
Q Consensus 153 ~v~~ll~~l~~~~~~~g~~g~~~g~~a~~~K--------------ll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~~ 218 (490)
.++++|+..+..++..++.- .-..+.++| +.+|.+.+....++.|++.++++. |++++
T Consensus 163 ~~~~ll~~~g~~~~~~~di~--~~~~~k~l~N~~~~~~g~~~g~~~~~n~~~a~~~~~~~E~~~la~a~------G~~~~ 234 (335)
T 1z82_A 163 ELQKRISTEYFRVYTCEDVV--GVEIAGALKNVIAIAAGILDGFGGWDNAKAALETRGIYEIARFGMFF------GADQK 234 (335)
T ss_dssp HHHHHHCCSSEEEEEESCHH--HHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHT------TCCHH
T ss_pred HHHHHhCCCCEEEEecCchH--HHHHHHHHHhHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHh------CCChh
Confidence 99999998877665544320 000112222 235666678889999999999999 99998
Q ss_pred HHHHHHhcccchhhHhHhHhHHhhccCc----ccccccCChh-HH---HHHHHHHHHHHHHHHHHHHcCCCchHHHHHHH
Q psy9637 219 GIALMWRGGCIIRSVFLGNIKAAFDKNP----ALSNLLLDPF-FK---DAIHATQSSWRAVVSQSALLGIPTPAFATALA 290 (490)
Q Consensus 219 ~v~~i~~~g~~~~s~~l~~i~~~~~~~~----~~~~~~~~~~-f~---~~l~~~~kDl~~~~~~A~~~gv~~P~~~aa~~ 290 (490)
++.++...+ .+.........++. .+.+. +... .. .......||++.++++++++|+++|+++++++
T Consensus 235 ~~~~l~~~~-----~~~~t~~s~~~~n~~~~~~~~~g-~~~~~~~~~~g~~~e~~~~~~~v~~~a~~~gv~~P~~~~v~~ 308 (335)
T 1z82_A 235 TFMGLAGIG-----DLMVTCNSRYSRNRRFGELIARG-FNPLKLLESSNQVVEGAFTVKAVMKIAKENKIDMPISEEVYR 308 (335)
T ss_dssp HHTSTTTHH-----HHHHHHHCTTCHHHHHHHHHHHT-CCHHHHHHTCSSCCTHHHHHHHHHHHHHHTTCCCHHHHHHHH
T ss_pred hhccccccc-----ceeeeccCccCcHHHHHHHHhCC-CCHHHHHHhcCCeeeHHHHHHHHHHHHHHhCCCCcHHHHHHH
Confidence 776542111 00000000000000 00000 0000 00 01113569999999999999999999999998
Q ss_pred HHH
Q psy9637 291 FYD 293 (490)
Q Consensus 291 ~~~ 293 (490)
.++
T Consensus 309 ~~~ 311 (335)
T 1z82_A 309 VVY 311 (335)
T ss_dssp HHH
T ss_pred HHh
Confidence 874
|
| >1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=2.6e-21 Score=198.46 Aligned_cols=281 Identities=12% Similarity=0.046 Sum_probs=182.2
Q ss_pred cEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccC---------CCCeeccCCHHHHHhhCCCCcEEEEec
Q psy9637 6 DIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAK---------GTNIIGAHSLEELVKNLKKPRRVMMLV 76 (490)
Q Consensus 6 ~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~---------~~~i~~~~s~~e~v~~l~~~dvIil~v 76 (490)
||+|||+|.||..||.+|+++||+|++|||++++++.+.+.+.. ..++..++++.+++.. +|+||+||
T Consensus 17 kI~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---aDvVilav 93 (366)
T 1evy_A 17 KAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNG---AEIILFVI 93 (366)
T ss_dssp EEEEECCSHHHHHHHHHHTTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTT---CSSEEECC
T ss_pred eEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccccccccccceeeeCCHHHHHcC---CCEEEECC
Confidence 89999999999999999999999999999999999988765421 1134556788887776 89999999
Q ss_pred CCCchHHHHHHh----hcccCCC-CCEEEcCCCCChHHH-HHHHHHHHHc-cccccccCCCCCccccc---cCC---ccC
Q psy9637 77 KAGSAVDDFIDK----LVPLLEK-GDIIIDGGNSEYQDT-DRRSKALEAK-GLLYVGCGVSGGEDGAR---YGP---SLM 143 (490)
Q Consensus 77 p~~~~v~~vl~~----l~~~l~~-g~iiId~s~~~~~~~-~~~~~~l~~~-gi~~ld~~vsGg~~~a~---~G~---~im 143 (490)
|+ ..+++++.+ +.+.+.+ +.+||+++|+....+ ....+.+.+. +.+ +.++..+|..+. .|. .++
T Consensus 94 ~~-~~~~~v~~~~~~gl~~~l~~~~~ivv~~~~gi~~~~~~~~~~~l~~~~~~~--~~~v~~gp~~~~~~~~g~~~~~~~ 170 (366)
T 1evy_A 94 PT-QFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIERSTLKFPAEIIGEFLPSP--LLSVLAGPSFAIEVATGVFTCVSI 170 (366)
T ss_dssp CH-HHHHHHHHHHCHHHHHHHHHHTCCEEECCCSCCTTTCCCHHHHHTTTSCGG--GEEEEESSCCHHHHHTTCCEEEEE
T ss_pred Ch-HHHHHHHHHhHHHHHHhcCccCCEEEEECCcCCCccccCHHHHHHHHCCCC--cEEEEeCCChHHHHHhCCceEEEE
Confidence 97 689999988 8888888 999999997654432 2223333332 321 234555555443 333 344
Q ss_pred CCCCcchHHHHHHHHHhh--CCceeeCCCCCCCCCCHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHH
Q psy9637 144 PGGNPAAWPALKPIFQKL--NPSFETSAPTPKPQRDKKEFLE--------------NIRQALYASKIVSYAQGFMLMRQA 207 (490)
Q Consensus 144 ~GG~~~a~~~v~~ll~~l--~~~~~~~g~~g~~~g~~a~~~K--------------ll~n~l~~~~~~~~aE~~~la~~a 207 (490)
.+++++.+++++++|+.+ +.+++..++.- ....+.++| +.+|.+.+....++.|++.++++.
T Consensus 171 ~~~~~~~~~~v~~ll~~~g~g~~~~~~~di~--~~~~~k~~~n~~~~~~~~~~~~~~~~n~~~~~~~~~~~E~~~la~a~ 248 (366)
T 1evy_A 171 ASADINVARRLQRIMSTGDRSFVCWATTDTV--GCEVASAVKNVLAIGSGVANGLGMGLNARAALIMRGLLEIRDLTAAL 248 (366)
T ss_dssp ECSSHHHHHHHHHHHSCTTSSEEEEEESCHH--HHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ecCCHHHHHHHHHHhcCCCCeEEEEEcCCch--HHHHHHHHHhHHHHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHHh
Confidence 566778899999999988 66655544420 000122222 236777888899999999999999
Q ss_pred HHHhCCCCCHHHHHHHHhcccch---hhHhHhHhHHhhccCcccccccCChh-HH---HHHHHHHHHHHHHHHHHHHcCC
Q psy9637 208 AEIHGWKLNYGGIALMWRGGCII---RSVFLGNIKAAFDKNPALSNLLLDPF-FK---DAIHATQSSWRAVVSQSALLGI 280 (490)
Q Consensus 208 ~~~~~~Gld~~~v~~i~~~g~~~---~s~~l~~i~~~~~~~~~~~~~~~~~~-f~---~~l~~~~kDl~~~~~~A~~~gv 280 (490)
|+|++++.++...+..+ .+.+.+... + ...+.+. +... .. .......||++.+++.|+++|+
T Consensus 249 ------Gi~~~~~~~~~~~~~~~~~~~s~~~~~~~--~--~~~~~~g-~~~~~~~~~~~~~~e~~~~~~~v~~~a~~~gv 317 (366)
T 1evy_A 249 ------GGDGSAVFGLAGLGDLQLTCSSELSRNFT--V--GKKLGKG-LPIEEIQRTSKAVAEGVATADPLMRLAKQLKV 317 (366)
T ss_dssp ------TCCCTTTTSTTTHHHHHHHHTCTTSHHHH--H--HHHHHTT-CCHHHHHC---CCCHHHHHHHHHHHHHHHHTC
T ss_pred ------CCCCccccccccchhheeeecCCCCchHH--H--HHHHhCC-CCHHHHHHHcCCeeehHHHHHHHHHHHHHhCC
Confidence 99987665431101000 000000000 0 0000000 0000 00 0112457999999999999999
Q ss_pred CchHHHHHHHHHHHHHhCCChhhhHHHH
Q psy9637 281 PTPAFATALAFYDGYRSKRLPANLLQAQ 308 (490)
Q Consensus 281 ~~P~~~aa~~~~~~~~~~g~~~~~~~a~ 308 (490)
++|+++.++++++. ..-+.+.++.+
T Consensus 318 ~~P~~~~v~~~~~~---~~~~~~~~~~l 342 (366)
T 1evy_A 318 KMPLCHQIYEIVYK---KKNPRDALADL 342 (366)
T ss_dssp CCHHHHHHHHHHHS---CCCHHHHHHHH
T ss_pred CCcHHHHHHHHHHC---CCCHHHHHHHH
Confidence 99999999888764 23334444443
|
| >2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.7e-21 Score=193.77 Aligned_cols=261 Identities=11% Similarity=0.032 Sum_probs=172.7
Q ss_pred CCC-CCcEEEEcccHHHHHHHHHHHHC-----C-CeEEEEeCChHHHHHHHH-cccCC---------CCeeccCCHHHHH
Q psy9637 1 MAA-KGDIGLIGLAVMGQNLILNMNDH-----G-FTVVAYNRTTAKVDSFLA-NEAKG---------TNIIGAHSLEELV 63 (490)
Q Consensus 1 M~~-~~~IgiIGlG~MG~~lA~~L~~~-----G-~~V~v~dr~~~~~~~l~~-~g~~~---------~~i~~~~s~~e~v 63 (490)
|+. +|||+|||+|.||..||.+|+++ | |+|++||| +++++.+.+ .+..- .++...++. +.+
T Consensus 4 m~~~~m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r-~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~ 81 (317)
T 2qyt_A 4 MNQQPIKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR-GAHLEAIRAAGGLRVVTPSRDFLARPTCVTDNP-AEV 81 (317)
T ss_dssp ---CCEEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC-HHHHHHHHHHTSEEEECSSCEEEECCSEEESCH-HHH
T ss_pred CCCCCCEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc-HHHHHHHHhcCCeEEEeCCCCeEEecceEecCc-ccc
Confidence 543 36999999999999999999999 9 99999999 888888877 54320 001111333 344
Q ss_pred hhCCCCcEEEEecCCCchHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHH----ccccccccCCCCC--ccccc
Q psy9637 64 KNLKKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEA----KGLLYVGCGVSGG--EDGAR 137 (490)
Q Consensus 64 ~~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~----~gi~~ld~~vsGg--~~~a~ 137 (490)
.. +|+||+|||+. .++++++.+.+.+.++.+||+++|+.. ......+.+.+ .|+.+++++++|+ ...+.
T Consensus 82 ~~---~D~vil~vk~~-~~~~v~~~i~~~l~~~~~iv~~~nG~~-~~~~l~~~l~~~~v~~g~~~~~a~~~~pg~~~~~~ 156 (317)
T 2qyt_A 82 GT---VDYILFCTKDY-DMERGVAEIRPMIGQNTKILPLLNGAD-IAERMRTYLPDTVVWKGCVYISARKSAPGLITLEA 156 (317)
T ss_dssp CC---EEEEEECCSSS-CHHHHHHHHGGGEEEEEEEEECSCSSS-HHHHHTTTSCTTTBCEEEEEEEEEEEETTEEEEEE
T ss_pred CC---CCEEEEecCcc-cHHHHHHHHHhhcCCCCEEEEccCCCC-cHHHHHHHCCCCcEEEEEEEEEEEEcCCCEEEEcC
Confidence 43 89999999996 689999999999988999999988753 22333333333 4566778888752 22233
Q ss_pred cCCcc-C----CCCCcchHHHHHHHHHhhCCceeeCCCCCCCCCCHHHHHHHHHHHHHH-------------------HH
Q psy9637 138 YGPSL-M----PGGNPAAWPALKPIFQKLNPSFETSAPTPKPQRDKKEFLENIRQALYA-------------------SK 193 (490)
Q Consensus 138 ~G~~i-m----~GG~~~a~~~v~~ll~~l~~~~~~~g~~g~~~g~~a~~~Kll~n~l~~-------------------~~ 193 (490)
.|... + .+++.+.+ .+.++|+..+..+.+.++.. .+.+.|++.|.+.. ..
T Consensus 157 ~g~~~~ig~~~~~~~~~~~-~~~~ll~~~g~~~~~~~di~-----~~~~~Kl~~N~~~~~~~al~g~~~g~~~~~~~~~~ 230 (317)
T 2qyt_A 157 DRELFYFGSGLPEQTDDEV-RLAELLTAAGIRAYNPTDID-----WYIMKKFMMISVTATATAYFDKPIGSILTEHEPEL 230 (317)
T ss_dssp EEEEEEEECCSSSCCHHHH-HHHHHHHHTTCCEECCSCHH-----HHHHHHHHHHHHHHHHHHHHTSCHHHHHHHCHHHH
T ss_pred CCceEEEcCCCCCCcCHHH-HHHHHHHHCCCCCEEchHHH-----HHHHHHHHHHHhhHHHHHHHCCCHHHHHHHHHHHH
Confidence 44433 2 33456667 89999999998877776653 67899999998764 35
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCHH--HHHHHHhcccchhhHhHhHhHHhhcc-CcccccccCChhHHHHHHHHHHHHHH
Q psy9637 194 IVSYAQGFMLMRQAAEIHGWKLNYG--GIALMWRGGCIIRSVFLGNIKAAFDK-NPALSNLLLDPFFKDAIHATQSSWRA 270 (490)
Q Consensus 194 ~~~~aE~~~la~~a~~~~~~Gld~~--~v~~i~~~g~~~~s~~l~~i~~~~~~-~~~~~~~~~~~~f~~~l~~~~kDl~~ 270 (490)
..++.|++.++++. |++++ .+.+++...+ ..... .+.+. .++..++..+++ ..++.
T Consensus 231 ~~~~~E~~~v~~a~------G~~~~~~~~~~~~~~~~-----------~~~~~~~~sm~-~d~~~g~~~E~~---~~~g~ 289 (317)
T 2qyt_A 231 LSLLEEVAELFRAK------YGQVPDDVVQQLLDKQR-----------KMPPESTSSMH-SDFLQGGSTEVE---TLTGY 289 (317)
T ss_dssp HHHHHHHHHHHHHH------TSCCCSSHHHHHHHHHH-----------HC---------------------C---TTTHH
T ss_pred HHHHHHHHHHHHHc------CCCCChHHHHHHHHHHh-----------ccCCCCCChHH-HHHHcCCccCHH---HHhhH
Confidence 58899999999999 88763 5555553211 00001 11111 122233322232 23789
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHHH
Q psy9637 271 VVSQSALLGIPTPAFATALAFYDGY 295 (490)
Q Consensus 271 ~~~~A~~~gv~~P~~~aa~~~~~~~ 295 (490)
+++.|+++|+++|+.+.++++++..
T Consensus 290 ~~~~a~~~gv~~P~~~~~~~~~~~~ 314 (317)
T 2qyt_A 290 VVREAEALRVDLPMYKRMYRELVSR 314 (317)
T ss_dssp HHHHHHHTTCCCHHHHHHHHTTCC-
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 9999999999999999999877543
|
| >1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.84 E-value=3.9e-20 Score=186.82 Aligned_cols=266 Identities=14% Similarity=0.054 Sum_probs=179.0
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeC--ChHHHHHHHHcccCC------CCeeccC--CHHHHHhhCCCCcEEEE
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNR--TTAKVDSFLANEAKG------TNIIGAH--SLEELVKNLKKPRRVMM 74 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr--~~~~~~~l~~~g~~~------~~i~~~~--s~~e~v~~l~~~dvIil 74 (490)
|||+|||+|.||..+|.+|+++||+|++||| ++++.+.+.+.+... .++..++ ++.+++.. +|+||+
T Consensus 1 m~I~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~---~D~vi~ 77 (335)
T 1txg_A 1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLEN---AEVVLL 77 (335)
T ss_dssp CEEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTT---CSEEEE
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHhCcCcccCccccceEEecHHhHHHHHhc---CCEEEE
Confidence 4899999999999999999999999999999 999999887765310 1123445 67776665 899999
Q ss_pred ecCCCchHHHHHHhhcccCCCCCEEEcCCCCC---hH-HHHHHHHHHHHc-cccccccCCCCCcccccc---CC--ccCC
Q psy9637 75 LVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSE---YQ-DTDRRSKALEAK-GLLYVGCGVSGGEDGARY---GP--SLMP 144 (490)
Q Consensus 75 ~vp~~~~v~~vl~~l~~~l~~g~iiId~s~~~---~~-~~~~~~~~l~~~-gi~~ld~~vsGg~~~a~~---G~--~im~ 144 (490)
|||+. .++++++.+.+ +.++++||+++|+. +. ......+.+.+. |..+ ++++..+|..+.. |. .+++
T Consensus 78 ~v~~~-~~~~v~~~i~~-l~~~~~vv~~~ng~~~~~~~~~~~l~~~~~~~~g~~~-~~~~~~~p~~~~~~~~g~~~~~~~ 154 (335)
T 1txg_A 78 GVSTD-GVLPVMSRILP-YLKDQYIVLISKGLIDFDNSVLTVPEAVWRLKHDLRE-RTVAITGPAIAREVAKRMPTTVVF 154 (335)
T ss_dssp CSCGG-GHHHHHHHHTT-TCCSCEEEECCCSEEEETTEEEEHHHHHHTTSTTCGG-GEEEEESSCCHHHHHTTCCEEEEE
T ss_pred cCChH-HHHHHHHHHhc-CCCCCEEEEEcCcCccCCCCcCccHHHHHHHhcCCCC-cEEEEECCCcHHHHHccCCcEEEE
Confidence 99995 89999999999 99999999999775 32 223333444432 3322 3444455554432 33 3444
Q ss_pred C-CCcchHHHHHHHHHhhCCceeeCCCCCCCCCCHHHH-----------------HHHH-----HHHHHHHHHHHHHHHH
Q psy9637 145 G-GNPAAWPALKPIFQKLNPSFETSAPTPKPQRDKKEF-----------------LENI-----RQALYASKIVSYAQGF 201 (490)
Q Consensus 145 G-G~~~a~~~v~~ll~~l~~~~~~~g~~g~~~g~~a~~-----------------~Kll-----~n~l~~~~~~~~aE~~ 201 (490)
| ++++.+++++++|+..+.++...++.. .+.+ +|+. +|.+......++.|++
T Consensus 155 ~~~~~~~~~~~~~ll~~~g~~~~~~~di~-----~~~~~k~~~N~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~E~~ 229 (335)
T 1txg_A 155 SSPSESSANKMKEIFETEYFGVEVTTDII-----GTEITSALKNVYSIAIAWIRGYESRKNVEMSNAKGVIATRAINEMA 229 (335)
T ss_dssp ECSCHHHHHHHHHHHCBTTEEEEEESCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHH
T ss_pred EeCCHHHHHHHHHHhCCCcEEEEecCchH-----HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHH
Confidence 4 467889999999998887766655431 2233 3555 7778888899999999
Q ss_pred HHHHHHHHHhCCCCCHHHHH------HHHhcccchhhHhHhHhHHhhccCcccccccCChhHH-H----HHHHHHHHHHH
Q psy9637 202 MLMRQAAEIHGWKLNYGGIA------LMWRGGCIIRSVFLGNIKAAFDKNPALSNLLLDPFFK-D----AIHATQSSWRA 270 (490)
Q Consensus 202 ~la~~a~~~~~~Gld~~~v~------~i~~~g~~~~s~~l~~i~~~~~~~~~~~~~~~~~~f~-~----~l~~~~kDl~~ 270 (490)
.++++. |++++++. +.+......+.. .+...+..+..+.. +... . ......||++.
T Consensus 230 ~la~~~------G~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~s~~~----d~~~~~~~~~~~~E~~~~~~~ 296 (335)
T 1txg_A 230 ELIEIL------GGDRETAFGLSGFGDLIATFRGGRNG---MLGELLGKGLSIDE----AMEELERRGVGVVEGYKTAEK 296 (335)
T ss_dssp HHHHHH------TSCGGGGGSTTTHHHHHHTTTCHHHH---HHHHHHHTTCCHHH----HHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHH------CCCcchhhcccchhheeeccccCccH---HHHHHHhCCCCHHH----HHHHhccCCceecchHHHHHH
Confidence 999999 99987664 333221110111 01111111110000 0000 0 11223599999
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHH
Q psy9637 271 VVSQSALLGIPTPAFATALAFYDG 294 (490)
Q Consensus 271 ~~~~A~~~gv~~P~~~aa~~~~~~ 294 (490)
+++.|+++|+|+|+++.+++.++.
T Consensus 297 ~~~~a~~~gv~~P~~~~~~~~~~~ 320 (335)
T 1txg_A 297 AYRLSSKINADTKLLDSIYRVLYE 320 (335)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHS
T ss_pred HHHHHHHcCCCCcHHHHHHHHHhC
Confidence 999999999999999999888763
|
| >1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=2.1e-20 Score=182.69 Aligned_cols=249 Identities=8% Similarity=0.033 Sum_probs=172.4
Q ss_pred CcEEEEcccHHHHHHHHHHHHCC-CeEEEEeCChHHHHHHHHc-ccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHG-FTVVAYNRTTAKVDSFLAN-EAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAV 82 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G-~~V~v~dr~~~~~~~l~~~-g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v 82 (490)
|||+|||+|.||..+|.+|+++| ++|++|||++++.+.+.+. +. ..+.++.+++ . +|+||+||| +..+
T Consensus 1 m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~~~~g~-----~~~~~~~~~~-~---~D~vi~~v~-~~~~ 70 (263)
T 1yqg_A 1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGV-----ETSATLPELH-S---DDVLILAVK-PQDM 70 (263)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCC-----EEESSCCCCC-T---TSEEEECSC-HHHH
T ss_pred CEEEEECchHHHHHHHHHHHHCCCCeEEEECCCHHHHHHHHHhcCC-----EEeCCHHHHh-c---CCEEEEEeC-chhH
Confidence 48999999999999999999999 9999999999999988764 33 3456666655 5 899999999 5788
Q ss_pred HHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCCCccccccCC-ccCCCC--CcchHHHHHHHHH
Q psy9637 83 DDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGGEDGARYGP-SLMPGG--NPAAWPALKPIFQ 159 (490)
Q Consensus 83 ~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg~~~a~~G~-~im~GG--~~~a~~~v~~ll~ 159 (490)
++++.++.+ + +.+|||++++... ..+.+.+ ..+.+++++ +.+.+.....|. .+++++ +++.++.++++|+
T Consensus 71 ~~v~~~l~~--~-~~ivv~~~~g~~~--~~l~~~~-~~~~~~v~~-~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~l~~ 143 (263)
T 1yqg_A 71 EAACKNIRT--N-GALVLSVAAGLSV--GTLSRYL-GGTRRIVRV-MPNTPGKIGLGVSGMYAEAEVSETDRRIADRIMK 143 (263)
T ss_dssp HHHHTTCCC--T-TCEEEECCTTCCH--HHHHHHT-TSCCCEEEE-ECCGGGGGTCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHhcc--C-CCEEEEecCCCCH--HHHHHHc-CCCCcEEEE-cCCHHHHHcCceEEEEcCCCCCHHHHHHHHHHHH
Confidence 899888776 5 8999999666543 2222333 346778888 777777777777 677777 7889999999999
Q ss_pred hhCCceeeCC-CCCCCCCCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhcccchhhHhHh
Q psy9637 160 KLNPSFETSA-PTPKPQRDKKEFLEN--IRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGGCIIRSVFLG 236 (490)
Q Consensus 160 ~l~~~~~~~g-~~g~~~g~~a~~~Kl--l~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~~~v~~i~~~g~~~~s~~l~ 236 (490)
.++..+ +++ +.. -....-+ ..+.+.+..+..+.|+ +++. |++.+.+.+++..+....+.++.
T Consensus 144 ~~g~~~-~~~~~~~-----~~~~~al~g~~~~~~~~~~~~l~e~---~~~~------G~~~~~~~~~~~~~~~~~~~~~~ 208 (263)
T 1yqg_A 144 SVGLTV-WLDDEEK-----MHGITGISGSGPAYVFYLLDALQNA---AIRQ------GFDMAEARALSLATFKGAVALAE 208 (263)
T ss_dssp TTEEEE-ECSSTTH-----HHHHHHHTTSHHHHHHHHHHHHHHH---HHHT------TCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCCEE-EeCChhh-----ccHHHHHHccHHHHHHHHHHHHHHH---HHHc------CCCHHHHHHHHHHHHHHHHHHHH
Confidence 998766 666 410 0000000 0122233344444444 5555 99999999988655433333443
Q ss_pred HhHHhhccCc-ccccccCChhHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhC
Q psy9637 237 NIKAAFDKNP-ALSNLLLDPFFKDAIHATQSSWRAVVSQSALLGIPTPAFATALAFYDGYRSK 298 (490)
Q Consensus 237 ~i~~~~~~~~-~~~~~~~~~~f~~~l~~~~kDl~~~~~~A~~~gv~~P~~~aa~~~~~~~~~~ 298 (490)
.. ...| .+.+..+.|++ .+....+++ ++.|++.|+.+++.+.|+++.+.
T Consensus 209 ~~----~~~~~~~~~~~~~~~~--~~~~~l~~l-------~~~~~~~~~~~a~~~~~~~~~~~ 258 (263)
T 1yqg_A 209 QT----GEDFEKLQKNVTSKGG--TTHEAVEAF-------RRHRVAEAISEGVCACVRRSQEM 258 (263)
T ss_dssp HH----CCCHHHHHHHTCCTTS--HHHHHHHHH-------HHTTHHHHHHHHHHHHHHHHHHH
T ss_pred hc----CCCHHHHHHhcCCCCh--hHHHHHHHH-------HHCCHHHHHHHHHHHHHHHHHHH
Confidence 21 1113 34445566665 344444444 67999999999999999988654
|
| >2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=6.3e-20 Score=185.24 Aligned_cols=264 Identities=13% Similarity=0.065 Sum_probs=172.7
Q ss_pred CCCcEEEEcccHHHHHHHHHHHHCC----CeEEEEeCChH--HHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEec
Q psy9637 3 AKGDIGLIGLAVMGQNLILNMNDHG----FTVVAYNRTTA--KVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLV 76 (490)
Q Consensus 3 ~~~~IgiIGlG~MG~~lA~~L~~~G----~~V~v~dr~~~--~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~v 76 (490)
.+|||+|||+|.||..||.+|+++| ++|++|||+++ +++.+.+.|. ..+.++.+++.. +|+||+||
T Consensus 21 ~~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~~~~~~~~l~~~G~-----~~~~~~~e~~~~---aDvVilav 92 (322)
T 2izz_A 21 QSMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMGV-----KLTPHNKETVQH---SDVLFLAV 92 (322)
T ss_dssp -CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCTTSHHHHHHHHHTC-----EEESCHHHHHHH---CSEEEECS
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCccHHHHHHHHHcCC-----EEeCChHHHhcc---CCEEEEEe
Confidence 4579999999999999999999999 89999999986 7888776553 356788888887 89999999
Q ss_pred CCCchHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHc--cccccccCCCCCccccccCCccCCCCC---cchH
Q psy9637 77 KAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAK--GLLYVGCGVSGGEDGARYGPSLMPGGN---PAAW 151 (490)
Q Consensus 77 p~~~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~--gi~~ld~~vsGg~~~a~~G~~im~GG~---~~a~ 151 (490)
|+ ..+++++.++.+.+.++.+||+++|+.+.. ...+.+.+. +.+++.+.. ..+.....|..++++|+ ++.+
T Consensus 93 ~~-~~~~~vl~~l~~~l~~~~ivvs~s~gi~~~--~l~~~l~~~~~~~~vv~~~p-~~p~~~~~g~~v~~~g~~~~~~~~ 168 (322)
T 2izz_A 93 KP-HIIPFILDEIGADIEDRHIVVSCAAGVTIS--SIEKKLSAFRPAPRVIRCMT-NTPVVVREGATVYATGTHAQVEDG 168 (322)
T ss_dssp CG-GGHHHHHHHHGGGCCTTCEEEECCTTCCHH--HHHHHHHTTSSCCEEEEEEC-CGGGGGTCEEEEEEECTTCCHHHH
T ss_pred CH-HHHHHHHHHHHhhcCCCCEEEEeCCCCCHH--HHHHHHhhcCCCCeEEEEeC-CcHHHHcCCeEEEEeCCCCCHHHH
Confidence 96 699999999999999999999998877543 233444432 234443322 22222334446666676 6889
Q ss_pred HHHHHHHHhhCCceeeCCCCCCCCCCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhcccc
Q psy9637 152 PALKPIFQKLNPSFETSAPTPKPQRDKKEFLENI--RQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGGCI 229 (490)
Q Consensus 152 ~~v~~ll~~l~~~~~~~g~~g~~~g~~a~~~Kll--~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~~~v~~i~~~g~~ 229 (490)
++++++|+.++..++. .+.. ......+. .+.+++..+.+++|+ +.+. |+|.+.+.+++..+..
T Consensus 169 ~~v~~ll~~~G~~~~~-~e~~-----~~~~~a~~g~gpa~~~~~~eala~a---~~~~------Gl~~~~a~~l~~~~~~ 233 (322)
T 2izz_A 169 RLMEQLLSSVGFCTEV-EEDL-----IDAVTGLSGSGPAYAFTALDALADG---GVKM------GLPRRLAVRLGAQALL 233 (322)
T ss_dssp HHHHHHHHTTEEEEEC-CGGG-----HHHHHHHTTTHHHHHHHHHHHHHHH---HHHT------TCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCEEEe-CHHH-----HHHHHHHhcCHHHHHHHHHHHHHHH---HHHc------CCCHHHHHHHHHHHHH
Confidence 9999999999876544 2210 11112221 133333333333333 3455 9999999998876654
Q ss_pred hhhHhHhHhHHhhccCcc-cccccCChhHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhCCChhhhHH
Q psy9637 230 IRSVFLGNIKAAFDKNPA-LSNLLLDPFFKDAIHATQSSWRAVVSQSALLGIPTPAFATALAFYDGYRSKRLPANLLQ 306 (490)
Q Consensus 230 ~~s~~l~~i~~~~~~~~~-~~~~~~~~~f~~~l~~~~kDl~~~~~~A~~~gv~~P~~~aa~~~~~~~~~~g~~~~~~~ 306 (490)
....++.. ....|. +.+....|.+. +...++..++.|++.++.+++.+.|+++.+.|.+++++.
T Consensus 234 g~~~~~~~----~~~~p~~l~~~v~sp~g~---------t~~~l~~l~~~g~~~~~~~av~~~~~ra~e~~~~~~~~~ 298 (322)
T 2izz_A 234 GAAKMLLH----SEQHPGQLKDNVSSPGGA---------TIHALHVLESGGFRSLLINAVEASCIRTRELQSMADQEQ 298 (322)
T ss_dssp HHHHHHHH----CSSCHHHHHHHHCCTTSH---------HHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHh----cCCCHHHHHHhCCCCCcH---------HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 33333321 011222 22223344431 234556778899999999999999999887655444433
|
| >2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A | Back alignment and structure |
|---|
Probab=99.83 E-value=1.6e-19 Score=176.11 Aligned_cols=249 Identities=11% Similarity=0.059 Sum_probs=172.4
Q ss_pred CCCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHc-ccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCch
Q psy9637 3 AKGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLAN-EAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSA 81 (490)
Q Consensus 3 ~~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~-g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~ 81 (490)
+||+|+|||+|.||..++.+|.++|++|.+|||++++.+.+.+. +. ..+.++.++++. +|+||+|+|+ ..
T Consensus 2 ~~m~i~iiG~G~mG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~g~-----~~~~~~~~~~~~---~D~Vi~~v~~-~~ 72 (259)
T 2ahr_A 2 NAMKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLAL-----PYAMSHQDLIDQ---VDLVILGIKP-QL 72 (259)
T ss_dssp -CCEEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHHTC-----CBCSSHHHHHHT---CSEEEECSCG-GG
T ss_pred CccEEEEECCCHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHHcCC-----EeeCCHHHHHhc---CCEEEEEeCc-Hh
Confidence 46799999999999999999999999999999999999888754 43 356788888876 8999999995 57
Q ss_pred HHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCCCccccccCC-ccCCCC--CcchHHHHHHHH
Q psy9637 82 VDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGGEDGARYGP-SLMPGG--NPAAWPALKPIF 158 (490)
Q Consensus 82 v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg~~~a~~G~-~im~GG--~~~a~~~v~~ll 158 (490)
+.+++..+ .++.+||+.+++...+. .+.+...+.++++ ++.+.+.....|. .+++|+ +++.+++++++|
T Consensus 73 ~~~v~~~l----~~~~~vv~~~~~~~~~~---l~~~~~~~~~~v~-~~p~~~~~~~~g~~~i~~~~~~~~~~~~~~~~ll 144 (259)
T 2ahr_A 73 FETVLKPL----HFKQPIISMAAGISLQR---LATFVGQDLPLLR-IMPNMNAQILQSSTALTGNALVSQELQARVRDLT 144 (259)
T ss_dssp HHHHHTTS----CCCSCEEECCTTCCHHH---HHHHHCTTSCEEE-EECCGGGGGTCEEEEEEECTTCCHHHHHHHHHHH
T ss_pred HHHHHHHh----ccCCEEEEeCCCCCHHH---HHHhcCCCCCEEE-EcCCchHHHcCceEEEEcCCCCCHHHHHHHHHHH
Confidence 77777654 37889999976554332 2222334567776 6677777777777 566776 788999999999
Q ss_pred HhhCCceeeCCCCCCCCCCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhcccchhhHhHh
Q psy9637 159 QKLNPSFETSAPTPKPQRDKKEFLENI--RQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGGCIIRSVFLG 236 (490)
Q Consensus 159 ~~l~~~~~~~g~~g~~~g~~a~~~Kll--~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~~~v~~i~~~g~~~~s~~l~ 236 (490)
+.++ .++++++.. ....+++. .+.+....+.+++|+ +.+. |+|.+.+.+++..+......++.
T Consensus 145 ~~~G-~~~~~~~~~-----~d~~~al~g~~~~~~~~~~~~la~~---~~~~------Gl~~~~~~~~~~~~~~~~~~~~~ 209 (259)
T 2ahr_A 145 DSFG-STFDISEKD-----FDTFTALAGSSPAYIYLFIEALAKA---GVKN------GIPKAKALEIVTQTVLASASNLK 209 (259)
T ss_dssp HTTE-EEEECCGGG-----HHHHHHHHTTHHHHHHHHHHHHHHH---HHHT------TCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCC-CEEEecHHH-----ccHHHHHhccHHHHHHHHHHHHHHH---HHHc------CCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999 677777532 33444443 234444444555554 4555 99999999998755432222332
Q ss_pred HhHHhhccCcccc-cccCChhHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Q psy9637 237 NIKAAFDKNPALS-NLLLDPFFKDAIHATQSSWRAVVSQSALLGIPTPAFATALAFYDGYR 296 (490)
Q Consensus 237 ~i~~~~~~~~~~~-~~~~~~~f~~~l~~~~kDl~~~~~~A~~~gv~~P~~~aa~~~~~~~~ 296 (490)
. ....|.+. +..++|.| ++....||++ +.|++..+.+++.+.++++.
T Consensus 210 ~----~~~~p~~l~~~~~~p~~--~~~~~~~~l~-------~~g~~~~~~~a~~~~~~r~~ 257 (259)
T 2ahr_A 210 T----SSQSPHDFIDAICSPGG--TTIAGLMELE-------RLGLTATVSSAIDKTIDKAK 257 (259)
T ss_dssp H----SSSCHHHHHHHHCCTTS--HHHHHHHHHH-------HHTHHHHHHHHHHHHHHHHH
T ss_pred h----cCCCHHHHHHhCCCCCh--hHHHHHHHHH-------HCChHHHHHHHHHHHHHHHh
Confidence 2 11123322 33456655 4555666664 67888888888888777654
|
| >1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.82 E-value=7e-20 Score=188.63 Aligned_cols=271 Identities=12% Similarity=0.058 Sum_probs=180.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCC-------CeEEEEeCChH-----HHHHHHHcccC---------CCCeeccCCHHHH
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHG-------FTVVAYNRTTA-----KVDSFLANEAK---------GTNIIGAHSLEEL 62 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G-------~~V~v~dr~~~-----~~~~l~~~g~~---------~~~i~~~~s~~e~ 62 (490)
||||+|||+|.||..||.+|+++| ++|++|||+++ +++.+.+.+.. ..++..+++++++
T Consensus 21 ~~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~ea 100 (375)
T 1yj8_A 21 PLKISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEFVNGERMVDIINNKHENTKYLKGVPLPHNIVAHSDLASV 100 (375)
T ss_dssp CBCEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC---CCHHHHHHHHCBCTTTSTTCBCCTTEEEESSTHHH
T ss_pred CCEEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChhhhhHHHHHHHHhcCcccccCCcccCcCCeEEECCHHHH
Confidence 468999999999999999999999 99999999998 88887764321 1235567788888
Q ss_pred HhhCCCCcEEEEecCCCchHHHHHHhhcc----cCCCCCEEEcCCCCChHH---HHHHHHHHHHc-cccccccCCCCCcc
Q psy9637 63 VKNLKKPRRVMMLVKAGSAVDDFIDKLVP----LLEKGDIIIDGGNSEYQD---TDRRSKALEAK-GLLYVGCGVSGGED 134 (490)
Q Consensus 63 v~~l~~~dvIil~vp~~~~v~~vl~~l~~----~l~~g~iiId~s~~~~~~---~~~~~~~l~~~-gi~~ld~~vsGg~~ 134 (490)
+.. +|+||+|||+ ..+++++.++.+ .+.++.+||+++++.... .....+.+.+. + .++++..||.
T Consensus 101 ~~~---aDvVilav~~-~~~~~vl~~i~~~~~~~l~~~~ivvs~~~Gi~~~~~~~~~l~~~l~~~~~---~~~~v~~gp~ 173 (375)
T 1yj8_A 101 IND---ADLLIFIVPC-QYLESVLASIKESESIKIASHAKAISLTKGFIVKKNQMKLCSNYISDFLN---IPCSALSGAN 173 (375)
T ss_dssp HTT---CSEEEECCCH-HHHHHHHHHHTC---CCCCTTCEEEECCCSCEEETTEEECHHHHHHHHSS---SCEEEEECSC
T ss_pred HcC---CCEEEEcCCH-HHHHHHHHHHhhhhhccCCCCCEEEEeCCccccCCccccCHHHHHHHHcC---CCEEEEeCCc
Confidence 776 8999999997 699999999998 899999999999865431 12222333322 2 3456666666
Q ss_pred ccc---cCC---ccCCCCCcchHHHHHHHHHhhCCceeeCCCCCCCCCCHHHHHHHH--------------HHHHHHHHH
Q psy9637 135 GAR---YGP---SLMPGGNPAAWPALKPIFQKLNPSFETSAPTPKPQRDKKEFLENI--------------RQALYASKI 194 (490)
Q Consensus 135 ~a~---~G~---~im~GG~~~a~~~v~~ll~~l~~~~~~~g~~g~~~g~~a~~~Kll--------------~n~l~~~~~ 194 (490)
.+. .|. .++.+++++.+++++++|+..+.+++..++.- ....+.++|.+ +|...+...
T Consensus 174 ~a~~v~~g~~~~~~~~~~~~~~~~~v~~ll~~~g~~~~~~~di~--~~~~~k~l~N~~~~~~g~~~~~~~~~n~~~a~~~ 251 (375)
T 1yj8_A 174 IAMDVAMENFSEATIGGNDKDSLVIWQRVFDLPYFKINCVNETI--EVEICGALKNIITLACGFCDGLNLPTNSKSAIIR 251 (375)
T ss_dssp CHHHHHTTCCEEEEEECSCHHHHHHHHHHHCBTTEEEEEESCSH--HHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred hHHHHHhCCCeEEEEecCCHHHHHHHHHHhCCCCeEEEEeCCcH--HHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHH
Confidence 543 233 34556778889999999998887766655531 00112233322 677888899
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHH------HhcccchhhHhHhHhHHhhcc-CcccccccCChhHH----HHHHH
Q psy9637 195 VSYAQGFMLMRQAAEIHGWKLNYGGIALM------WRGGCIIRSVFLGNIKAAFDK-NPALSNLLLDPFFK----DAIHA 263 (490)
Q Consensus 195 ~~~aE~~~la~~a~~~~~~Gld~~~v~~i------~~~g~~~~s~~l~~i~~~~~~-~~~~~~~~~~~~f~----~~l~~ 263 (490)
.++.|++.++++. +-|++++++.++ +......+... +...+.. +.. ..+.+... +....
T Consensus 252 ~~~~E~~~la~a~----G~G~~~~~~~~~~g~~dl~~t~~~~~~~~---~~~~~~~~g~~---~~~~d~~~~~~~g~~~E 321 (375)
T 1yj8_A 252 NGINEMILFGKVF----FQKFNENILLESCGFADIITSFLAGRNAK---CSAEFIKSTPK---KTWEELENEILKGQKLQ 321 (375)
T ss_dssp HHHHHHHHHHHHH----SSCCCGGGGGSTTTHHHHHHHHSSSSHHH---HHHHHHHHTTS---SCHHHHHHHHHTTCCCH
T ss_pred HHHHHHHHHHHHh----ccCCCcchhhccccccceeEeeeCCccHH---HHHHHHhcCCC---CCHHHHHHhhcCCcEee
Confidence 9999999999998 113888766432 11100001100 0000100 000 00000000 11224
Q ss_pred HHHHHHHHHHHHHHcCC--CchHHHHHHHHHH
Q psy9637 264 TQSSWRAVVSQSALLGI--PTPAFATALAFYD 293 (490)
Q Consensus 264 ~~kDl~~~~~~A~~~gv--~~P~~~aa~~~~~ 293 (490)
..+|++.+++.|+++|+ ++|+++.+++++.
T Consensus 322 ~~~~~~~v~~~a~~~gv~~~~P~~~~v~~~~~ 353 (375)
T 1yj8_A 322 GTVTLKYVYHMIKEKNMTNEFPLFTVLHKISF 353 (375)
T ss_dssp HHHHHHHHHHHHHHTTCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHh
Confidence 58999999999999999 9999999988765
|
| >1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=4.2e-20 Score=188.41 Aligned_cols=264 Identities=12% Similarity=0.078 Sum_probs=179.0
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCC-------CeEEEEeCChH-----HHHHHHHcccC---------CCCeeccCCHHHH
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHG-------FTVVAYNRTTA-----KVDSFLANEAK---------GTNIIGAHSLEEL 62 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G-------~~V~v~dr~~~-----~~~~l~~~g~~---------~~~i~~~~s~~e~ 62 (490)
+|||+|||+|.||..+|.+|+++| ++|++|||+++ +.+.+.+.+.. ..++..++++.++
T Consensus 8 ~mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (354)
T 1x0v_A 8 SKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVAVPDVVQA 87 (354)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCBSSSSBHHHHHHHHSCCTTTSTTCCCCTTEEEESSHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcChhhhhhHHHHHHHhcCcccccCCcccCccCeEEEcCHHHH
Confidence 368999999999999999999999 99999999988 88877653211 1234556788887
Q ss_pred HhhCCCCcEEEEecCCCchHHHHHHhhcccCCCCCEEEcCCCCCh---HHHHHHHHHHHHc-cccccccCCCCCccccc-
Q psy9637 63 VKNLKKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEY---QDTDRRSKALEAK-GLLYVGCGVSGGEDGAR- 137 (490)
Q Consensus 63 v~~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~s~~~~---~~~~~~~~~l~~~-gi~~ld~~vsGg~~~a~- 137 (490)
+.. +|+||+|||+ ..++++++++.+.+.++.+||+++|+.. .......+.+.+. + .++++..+|..+.
T Consensus 88 ~~~---aD~Vilav~~-~~~~~v~~~i~~~l~~~~ivv~~~~Gi~~~~~~~~~l~~~l~~~~~---~~~~v~~gp~~a~~ 160 (354)
T 1x0v_A 88 AED---ADILIFVVPH-QFIGKICDQLKGHLKANATGISLIKGVDEGPNGLKLISEVIGERLG---IPMSVLMGANIASE 160 (354)
T ss_dssp HTT---CSEEEECCCG-GGHHHHHHHHTTCSCTTCEEEECCCCBCSSSSSCCBHHHHHHHHHT---CCEEEEECSCCHHH
T ss_pred HcC---CCEEEEeCCH-HHHHHHHHHHHhhCCCCCEEEEECCccCCCCCccccHHHHHHHHcC---CCEEEEECCCcHHH
Confidence 776 8999999998 5899999999999999999999998653 1112222222222 3 3456666666553
Q ss_pred --cCC---ccCCCCCcchHHHHHHHHHhhCCceeeCCCCCCCCCCHHHHHHHH-----------------HHHHHHHHHH
Q psy9637 138 --YGP---SLMPGGNPAAWPALKPIFQKLNPSFETSAPTPKPQRDKKEFLENI-----------------RQALYASKIV 195 (490)
Q Consensus 138 --~G~---~im~GG~~~a~~~v~~ll~~l~~~~~~~g~~g~~~g~~a~~~Kll-----------------~n~l~~~~~~ 195 (490)
.|. ..+.+++++..++++++|+..+.+++..++.- ...+.|++ +|...+....
T Consensus 161 v~~g~~~~~~~~~~~~~~~~~v~~ll~~~g~~~~~~~di~-----~~~~~k~~~N~~~~~~g~~~~~~~~~n~~~~~~~~ 235 (354)
T 1x0v_A 161 VADEKFCETTIGCKDPAQGQLLKELMQTPNFRITVVQEVD-----TVEICGALKNVVAVGAGFCDGLGFGDNTKAAVIRL 235 (354)
T ss_dssp HHTTCCEEEEEECSSHHHHHHHHHHHCBTTEEEEEESCHH-----HHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHhcCCceEEEEECCHHHHHHHHHHhCCCCEEEEEcCCch-----HhHHHHHHHHHHHHHHHHHHHccCCccHHHHHHHH
Confidence 243 23446677889999999998887766655431 12344444 6777888999
Q ss_pred HHHHHHHHHHHHHHHhCCCC---CHHHHHHH------HhcccchhhHhHhHhHHhhcc-CcccccccCChhHH----HHH
Q psy9637 196 SYAQGFMLMRQAAEIHGWKL---NYGGIALM------WRGGCIIRSVFLGNIKAAFDK-NPALSNLLLDPFFK----DAI 261 (490)
Q Consensus 196 ~~aE~~~la~~a~~~~~~Gl---d~~~v~~i------~~~g~~~~s~~l~~i~~~~~~-~~~~~~~~~~~~f~----~~l 261 (490)
++.|++.++++. |+ +++++.++ +......+.. . +...+.+ +.. +.+... +..
T Consensus 236 ~~~E~~~la~a~------G~~~~~~~~~~~~~g~~d~~~~~~~~~~~--~-~~~~~~~~~~~-----~~~~~~~~~~g~~ 301 (354)
T 1x0v_A 236 GLMEMIAFAKLF------CSGPVSSATFLESCGVADLITTCYGGRNR--K-VAEAFARTGKS-----IEQLEKELLNGQK 301 (354)
T ss_dssp HHHHHHHHHHHH------SSSCCCGGGGGSTTTHHHHHHHHHHCHHH--H-HHHHHHHHCCC-----HHHHHHHHSTTCC
T ss_pred HHHHHHHHHHHh------cCCCCCcccccccchHHHHHHhhcccccH--H-HHHHHHhcCCC-----HHHHHHhhcCCcE
Confidence 999999999999 88 88765432 1111000100 0 0001100 000 000000 112
Q ss_pred HHHHHHHHHHHHHHHHcCC--CchHHHHHHHHHH
Q psy9637 262 HATQSSWRAVVSQSALLGI--PTPAFATALAFYD 293 (490)
Q Consensus 262 ~~~~kDl~~~~~~A~~~gv--~~P~~~aa~~~~~ 293 (490)
....+|++.+++.|+++|+ ++|+++.+++++.
T Consensus 302 ~E~~~~~g~v~~~a~~~gv~~~~P~~~~v~~~~~ 335 (354)
T 1x0v_A 302 LQGPETARELYSILQHKGLVDKFPLFMAVYKVCY 335 (354)
T ss_dssp CHHHHHHHHHHHHHHHHTCGGGSHHHHHHHHHHH
T ss_pred eehHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHh
Confidence 2357999999999999999 9999999988875
|
| >1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.4e-19 Score=179.80 Aligned_cols=189 Identities=11% Similarity=0.109 Sum_probs=143.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccC--CCCeeccCCHHHHHhhCCCCcEEEEecCCCch
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAK--GTNIIGAHSLEELVKNLKKPRRVMMLVKAGSA 81 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~--~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~ 81 (490)
.++|||||+|.||.+||.+|+ +||+|++||+++++++++.+.-.. -.++..++++++ +++ +|+||.|||.+.+
T Consensus 12 ~~~V~vIG~G~MG~~iA~~la-aG~~V~v~d~~~~~~~~~~~~l~~~~~~~i~~~~~~~~-~~~---aDlVieavpe~~~ 86 (293)
T 1zej_A 12 HMKVFVIGAGLMGRGIAIAIA-SKHEVVLQDVSEKALEAAREQIPEELLSKIEFTTTLEK-VKD---CDIVMEAVFEDLN 86 (293)
T ss_dssp CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHHHHHHHHHHSCGGGGGGEEEESSCTT-GGG---CSEEEECCCSCHH
T ss_pred CCeEEEEeeCHHHHHHHHHHH-cCCEEEEEECCHHHHHHHHHHHHHHHhCCeEEeCCHHH-HcC---CCEEEEcCcCCHH
Confidence 378999999999999999999 999999999999999988765100 013456788876 555 8999999999988
Q ss_pred HHHHH-HhhcccCCCCCEEE-cCCCCChHHHHHHHH-HHHHccccccccCCCCCccccccCC-ccCCC--CCcchHHHHH
Q psy9637 82 VDDFI-DKLVPLLEKGDIII-DGGNSEYQDTDRRSK-ALEAKGLLYVGCGVSGGEDGARYGP-SLMPG--GNPAAWPALK 155 (490)
Q Consensus 82 v~~vl-~~l~~~l~~g~iiI-d~s~~~~~~~~~~~~-~l~~~gi~~ld~~vsGg~~~a~~G~-~im~G--G~~~a~~~v~ 155 (490)
++.++ .++.+. ++.+++ |+||..+....+..+ ..+..|+||++ |+.+++ . .++.| ++++++++++
T Consensus 87 vk~~l~~~l~~~--~~~IlasntSti~~~~~a~~~~~~~r~~G~Hf~~-Pv~~~~------lveiv~g~~t~~~~~~~~~ 157 (293)
T 1zej_A 87 TKVEVLREVERL--TNAPLCSNTSVISVDDIAERLDSPSRFLGVHWMN-PPHVMP------LVEIVISRFTDSKTVAFVE 157 (293)
T ss_dssp HHHHHHHHHHTT--CCSCEEECCSSSCHHHHHTTSSCGGGEEEEEECS-STTTCC------EEEEEECTTCCHHHHHHHH
T ss_pred HHHHHHHHHhcC--CCCEEEEECCCcCHHHHHHHhhcccceEeEEecC-ccccCC------EEEEECCCCCCHHHHHHHH
Confidence 88776 555444 888885 677766543332221 11235899999 654432 2 46666 4889999999
Q ss_pred HHHHhhCCceeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhccc
Q psy9637 156 PIFQKLNPSFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGGC 228 (490)
Q Consensus 156 ~ll~~l~~~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~~~v~~i~~~g~ 228 (490)
++++.++..++++++. +++|+.+. ..++|++.++++ |++++++.++++.|+
T Consensus 158 ~l~~~lGk~~v~v~d~-----------fi~Nrll~----~~~~EA~~l~~~-------Gv~~e~id~~~~~g~ 208 (293)
T 1zej_A 158 GFLRELGKEVVVCKGQ-----------SLVNRFNA----AVLSEASRMIEE-------GVRAEDVDRVWKHHL 208 (293)
T ss_dssp HHHHHTTCEEEEEESS-----------CHHHHHHH----HHHHHHHHHHHH-------TCCHHHHHHHHHTTH
T ss_pred HHHHHcCCeEEEeccc-----------ccHHHHHH----HHHHHHHHHHHh-------CCCHHHHHHHHHhcC
Confidence 9999999998887741 66777765 469999999887 779999999998664
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.1e-19 Score=180.26 Aligned_cols=200 Identities=9% Similarity=0.082 Sum_probs=157.6
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchH
Q psy9637 4 KGDIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAV 82 (490)
Q Consensus 4 ~~~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v 82 (490)
||+|+|||+ |.||..+|.+|+++|++|++|||++++.+.+.+.+.. . .++.++++. +|+||+|||+. .+
T Consensus 11 mm~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~g~~-----~-~~~~~~~~~---aDvVi~av~~~-~~ 80 (286)
T 3c24_A 11 PKTVAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGRDRLQGMGIP-----L-TDGDGWIDE---ADVVVLALPDN-II 80 (286)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSHHHHHHHHHTTCC-----C-CCSSGGGGT---CSEEEECSCHH-HH
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHhcCCC-----c-CCHHHHhcC---CCEEEEcCCch-HH
Confidence 369999999 9999999999999999999999999999888764422 2 356666665 99999999995 68
Q ss_pred HHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccccc-ccCCCCCc------cccccCC--------c--cCCC
Q psy9637 83 DDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYV-GCGVSGGE------DGARYGP--------S--LMPG 145 (490)
Q Consensus 83 ~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~l-d~~vsGg~------~~a~~G~--------~--im~G 145 (490)
+++++++.+.++++.+|||+++..+....+ + + ..+..|+ +.|++|++ .....|. . ++.+
T Consensus 81 ~~v~~~l~~~l~~~~ivv~~s~~~~~~~l~--~-~-~~~~~~v~~~P~~~~~~~~~~~~~~~~g~l~~~~~~~~i~~~~~ 156 (286)
T 3c24_A 81 EKVAEDIVPRVRPGTIVLILDAAAPYAGVM--P-E-RADITYFIGHPCHPPLFNDETDPAARTDYHGGIAKQAIVCALMQ 156 (286)
T ss_dssp HHHHHHHGGGSCTTCEEEESCSHHHHHTCS--C-C-CTTSEEEEEEECCSCSSCCCCSHHHHTCSSSSSSCEEEEEEEEE
T ss_pred HHHHHHHHHhCCCCCEEEECCCCchhHHHH--h-h-hCCCeEEecCCCCccccccccchhhccCcccccccceeeeeccC
Confidence 999999999999999999988865332221 2 2 3467888 88999887 4455662 1 3457
Q ss_pred CCcchHHHHHHHHHhhCC---ceeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Q psy9637 146 GNPAAWPALKPIFQKLNP---SFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIAL 222 (490)
Q Consensus 146 G~~~a~~~v~~ll~~l~~---~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~~~v~~ 222 (490)
++++.+++++++|+.++. +++++++.+ .....|.+.|.....++.+++|++..+.+.. |+|.+.+.+
T Consensus 157 ~~~~~~~~v~~l~~~~G~~~~~~~~v~~~~-----~~~~~~a~~n~~~~~~~~~~~eal~~~~~~~-----Gl~~~~~~~ 226 (286)
T 3c24_A 157 GPEEHYAIGADICETMWSPVTRTHRVTTEQ-----LAILEPGLSEMVAMPFVETMVHAVDECADRY-----GIDRQAALD 226 (286)
T ss_dssp SCTHHHHHHHHHHHHHTCSEEEEEECCHHH-----HHHHTTHHHHTTHHHHHHHHHHHHHHHHHHH-----CCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCcceEEEeChhH-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----CCCHHHHHH
Confidence 889999999999999998 788877642 3334488999888899999999887655432 999999998
Q ss_pred HHhcc
Q psy9637 223 MWRGG 227 (490)
Q Consensus 223 i~~~g 227 (490)
++..+
T Consensus 227 ~~~~~ 231 (286)
T 3c24_A 227 FMIGH 231 (286)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87543
|
| >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.1e-19 Score=176.02 Aligned_cols=202 Identities=14% Similarity=0.138 Sum_probs=151.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCe-EEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchH
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFT-VVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAV 82 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~-V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v 82 (490)
+|+|+|||+|.||..++..|.++|++ |.+|||++++.+.+.+... +..+.+++++++. +|+||+++|+. .+
T Consensus 10 ~m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~~~~~~~~~~~g----~~~~~~~~~~~~~---~Dvvi~av~~~-~~ 81 (266)
T 3d1l_A 10 DTPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTEESARELAQKVE----AEYTTDLAEVNPY---AKLYIVSLKDS-AF 81 (266)
T ss_dssp GCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSHHHHHHHHHHTT----CEEESCGGGSCSC---CSEEEECCCHH-HH
T ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcC----CceeCCHHHHhcC---CCEEEEecCHH-HH
Confidence 47999999999999999999999999 8999999999988876511 2356777776655 89999999996 77
Q ss_pred HHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCCCccccccCCccCC-CCCcchHHHHHHHHHhh
Q psy9637 83 DDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGGEDGARYGPSLMP-GGNPAAWPALKPIFQKL 161 (490)
Q Consensus 83 ~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg~~~a~~G~~im~-GG~~~a~~~v~~ll~~l 161 (490)
+++++++.+.++++.+||+++++.+.+. +.+.+...+..+.++|++|++.....+..+++ |++++.++.++++|+.+
T Consensus 82 ~~v~~~l~~~~~~~~ivv~~s~~~~~~~--l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~ 159 (266)
T 3d1l_A 82 AELLQGIVEGKREEALMVHTAGSIPMNV--WEGHVPHYGVFYPMQTFSKQREVDFKEIPFFIEASSTEDAAFLKAIASTL 159 (266)
T ss_dssp HHHHHHHHTTCCTTCEEEECCTTSCGGG--STTTCSSEEEEEECCCC---CCCCCTTCCEEEEESSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhcCCCcEEEECCCCCchHH--HHHHHHhccCcCCceecCCCchhhcCCCeEEEecCCHHHHHHHHHHHHhc
Confidence 8999999888889999999999887554 22233333666778888886654333334444 78889999999999999
Q ss_pred CCceeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhcc
Q psy9637 162 NPSFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGG 227 (490)
Q Consensus 162 ~~~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~~~v~~i~~~g 227 (490)
+.+++++++.+ ......+.|+++|. ...+..++|+ ++++. |++.+.+.++++.+
T Consensus 160 g~~~~~~~~~~--~~~~~~~~~l~~~~--~~~~~~~~ea--l~~~~------Gl~~~~~~~l~~~~ 213 (266)
T 3d1l_A 160 SNRVYDADSEQ--RKSLHLAAVFTCNF--TNHMYALAAE--LLKKY------NLPFDVMLPLIDET 213 (266)
T ss_dssp CSCEEECCHHH--HHHHHHHHHHHHHH--HHHHHHHHHH--HHHHT------TCCGGGGHHHHHHH
T ss_pred CCcEEEeCHHH--HHHHHHHHHHHHHH--HHHHHHHHHH--HHHHc------CCCHHHHHHHHHHH
Confidence 98888877531 00023567888887 3456666775 55666 99999998887654
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.5e-17 Score=167.20 Aligned_cols=157 Identities=15% Similarity=0.252 Sum_probs=125.6
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC--eEEEEeCChHHHHHHHHcccCCCCeeccCCHHH-HHhhCCCCcEEEEecCCCch
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGF--TVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEE-LVKNLKKPRRVMMLVKAGSA 81 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e-~v~~l~~~dvIil~vp~~~~ 81 (490)
|||||||+|.||..||++|.++|+ +|++|||++++++.+.+.|.. -..++++++ +++. +|+||+|||.. .
T Consensus 34 ~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G~~---~~~~~~~~~~~~~~---aDvVilavp~~-~ 106 (314)
T 3ggo_A 34 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGII---DEGTTSIAKVEDFS---PDFVMLSSPVR-T 106 (314)
T ss_dssp SEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSC---SEEESCTTGGGGGC---CSEEEECSCGG-G
T ss_pred CEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCCCc---chhcCCHHHHhhcc---CCEEEEeCCHH-H
Confidence 689999999999999999999999 999999999999888776542 024577777 6766 99999999995 7
Q ss_pred HHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccc-cCCCCC----ccccc----cCC-ccCC---CCCc
Q psy9637 82 VDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVG-CGVSGG----EDGAR----YGP-SLMP---GGNP 148 (490)
Q Consensus 82 v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld-~~vsGg----~~~a~----~G~-~im~---GG~~ 148 (490)
+.++++++.+.++++.+|+|++++.........+.+.. +|++ .|++|+ +..+. .|. .+++ ++++
T Consensus 107 ~~~vl~~l~~~l~~~~iv~d~~Svk~~~~~~~~~~l~~---~~v~~hPm~G~e~sG~~~A~~~Lf~g~~~il~~~~~~~~ 183 (314)
T 3ggo_A 107 FREIAKKLSYILSEDATVTDQGSVKGKLVYDLENILGK---RFVGGHPIAGTEKSGVEYSLDNLYEGKKVILTPTKKTDK 183 (314)
T ss_dssp HHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGG---GEECEEECCCCCCCSGGGCCTTTTTTCEEEECCCTTSCH
T ss_pred HHHHHHHHhhccCCCcEEEECCCCcHHHHHHHHHhcCC---CEEecCcccCCcccchhhhhhhhhcCCEEEEEeCCCCCH
Confidence 88999999999999999999998876555544444432 7777 588874 44443 565 5554 4678
Q ss_pred chHHHHHHHHHhhCCceeeCCCC
Q psy9637 149 AAWPALKPIFQKLNPSFETSAPT 171 (490)
Q Consensus 149 ~a~~~v~~ll~~l~~~~~~~g~~ 171 (490)
+++++++++|+.+|.+++++++.
T Consensus 184 ~~~~~v~~l~~~~G~~v~~~~~~ 206 (314)
T 3ggo_A 184 KRLKLVKRVWEDVGGVVEYMSPE 206 (314)
T ss_dssp HHHHHHHHHHHHTTCEEEECCHH
T ss_pred HHHHHHHHHHHHcCCEEEEcCHH
Confidence 99999999999999998887764
|
| >1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.75 E-value=5.5e-18 Score=172.59 Aligned_cols=267 Identities=12% Similarity=0.134 Sum_probs=166.9
Q ss_pred CCCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccC---C------CCe-eccCCHHHHHhhCCCCcEE
Q psy9637 3 AKGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAK---G------TNI-IGAHSLEELVKNLKKPRRV 72 (490)
Q Consensus 3 ~~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~---~------~~i-~~~~s~~e~v~~l~~~dvI 72 (490)
.+|||+|||+|.||..+|.+|+++|++|++|||++++.+.+.+.+.. + .++ ..++++++++.. +|+|
T Consensus 3 ~~mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~D~v 79 (359)
T 1bg6_A 3 ESKTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKD---ADVI 79 (359)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTT---CSEE
T ss_pred CcCeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHhcCCeEEeccccccccccceecCCHHHHHhc---CCEE
Confidence 45799999999999999999999999999999999999988765310 0 011 245788887765 8999
Q ss_pred EEecCCCchHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcc---ccccc---cCCCCCccc---ccc-C--C
Q psy9637 73 MMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKG---LLYVG---CGVSGGEDG---ARY-G--P 140 (490)
Q Consensus 73 il~vp~~~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~g---i~~ld---~~vsGg~~~---a~~-G--~ 140 (490)
|+|+|+. ..+++++.+.+.++++.+||+..+... .+.+..+.+.+.+ +.|++ +|+++...+ +.. + .
T Consensus 80 i~~v~~~-~~~~~~~~l~~~l~~~~~vv~~~~~~~-~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~gpg~v~~~~~~~ 157 (359)
T 1bg6_A 80 LIVVPAI-HHASIAANIASYISEGQLIILNPGATG-GALEFRKILRENGAPEVTIGETSSMLFTCRSERPGQVTVNAIKG 157 (359)
T ss_dssp EECSCGG-GHHHHHHHHGGGCCTTCEEEESSCCSS-HHHHHHHHHHHTTCCCCEEEEESSCSEEEECSSTTEEEEEEECS
T ss_pred EEeCCch-HHHHHHHHHHHhCCCCCEEEEcCCCch-HHHHHHHHHHhcCCCCeEEEEecCCcEEEEeCCCCEEEEEEeec
Confidence 9999996 678999999999999999998855232 3344445555544 44655 455443222 110 0 1
Q ss_pred ccCC-----CCCcchHHHHHHHHHhhCCceeeCCCCCCCCCCHHHHHHHH------------------------------
Q psy9637 141 SLMP-----GGNPAAWPALKPIFQKLNPSFETSAPTPKPQRDKKEFLENI------------------------------ 185 (490)
Q Consensus 141 ~im~-----GG~~~a~~~v~~ll~~l~~~~~~~g~~g~~~g~~a~~~Kll------------------------------ 185 (490)
.+.+ +++++.++.++++|..+. .... -+.|++
T Consensus 158 ~~~~g~~~~~~~~~~~~~l~~~~~~~~----~~~d---------i~~k~~~nvn~~~n~~~al~~~~~~~~~~~~~~~~~ 224 (359)
T 1bg6_A 158 AMDFACLPAAKAGWALEQIGSVLPQYV----AVEN---------VLHTSLTNVNAVMHPLPTLLNAARCESGTPFQYYLE 224 (359)
T ss_dssp CEEEEEESGGGHHHHHHHHTTTCTTEE----ECSC---------HHHHHHCCHHHHHTHHHHHTTHHHHHTTCCCBHHHH
T ss_pred ceEEEeccccccHHHHHHHHHHhhhcE----EcCC---------hHhhhccCCCccccHHHHHhhhchhhcCCccchhhc
Confidence 1111 244456777777775542 1010 011111
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhcccchhhHhHhHhHHhhccCcccccccCChhHHHHHH-
Q psy9637 186 --RQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGGCIIRSVFLGNIKAAFDKNPALSNLLLDPFFKDAIH- 262 (490)
Q Consensus 186 --~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~~~v~~i~~~g~~~~s~~l~~i~~~~~~~~~~~~~~~~~~f~~~l~- 262 (490)
.+........++.|++.++++. |++++.+.+.+..+......- +...+.+.+ +...+..|. .++
T Consensus 225 ~~~~~~~~~~~~~~~E~~~va~a~------G~~~~~~~~~~~~~~~~~~~~---l~~~~~~~s-m~~d~~~~~---e~~~ 291 (359)
T 1bg6_A 225 GITPSVGSLAEKVDAERIAIAKAF------DLNVPSVCEWYKESYGQSPAT---IYEAVQGNP-AYRGIAGPI---NLNT 291 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHTT------TCCCCCHHHHC-------CCS---HHHHHHTCG-GGTTCBCCS---SSCC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHh------CCCCCcHHHHHHHHhCCCccc---HHHHHhcch-hhcCCCCCC---CCCc
Confidence 1223455677889999999988 998877777764432110000 000000111 111111111 222
Q ss_pred -HHHHHH----HHHHHHHHHcCCCchHHHHHHHHHHHHHhCCC
Q psy9637 263 -ATQSSW----RAVVSQSALLGIPTPAFATALAFYDGYRSKRL 300 (490)
Q Consensus 263 -~~~kDl----~~~~~~A~~~gv~~P~~~aa~~~~~~~~~~g~ 300 (490)
.+.||+ ..+++.|+++|+|+|+.+.+++.++.+...++
T Consensus 292 ~~~~~D~~~~~g~~~~~a~~~gv~~P~~~~l~~~~~~~~~~~~ 334 (359)
T 1bg6_A 292 RYFFEDVSTGLVPLSELGRAVNVPTPLIDAVLDLISSLIDTDF 334 (359)
T ss_dssp HHHHHHHHTTHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTCCH
T ss_pred cceecCcCccHHHHHHHHHHcCCCchHHHHHHHHHHHHHCCCh
Confidence 467887 79999999999999999999999987765543
|
| >3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.1e-17 Score=160.36 Aligned_cols=201 Identities=14% Similarity=0.150 Sum_probs=138.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCC----eEEEEeCChHHHHHHHHc-ccCCCCeeccCCHHHHHhhCCCCcEEEEecCC
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGF----TVVAYNRTTAKVDSFLAN-EAKGTNIIGAHSLEELVKNLKKPRRVMMLVKA 78 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~----~V~v~dr~~~~~~~l~~~-g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~ 78 (490)
+|||+|||+|.||..|+.+|.++|+ +|++|||++++.+.+.+. +. ..+.++.++++. +|+||+|||+
T Consensus 2 ~~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~~~~~~~~~~~g~-----~~~~~~~e~~~~---aDvVilav~~ 73 (247)
T 3gt0_A 2 DKQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNTANLKNASEKYGL-----TTTTDNNEVAKN---ADILILSIKP 73 (247)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSCHHHHHHHHHHHCC-----EECSCHHHHHHH---CSEEEECSCT
T ss_pred CCeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCCHHHHHHHHHHhCC-----EEeCChHHHHHh---CCEEEEEeCH
Confidence 3689999999999999999999999 999999999999988754 33 367899998887 8999999987
Q ss_pred CchHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccccc----ccCCCCCccccccCC-ccCC--CCCcchH
Q psy9637 79 GSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYV----GCGVSGGEDGARYGP-SLMP--GGNPAAW 151 (490)
Q Consensus 79 ~~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~l----d~~vsGg~~~a~~G~-~im~--GG~~~a~ 151 (490)
..++++++++.+.++++++||...++.... ...+.+ ..+..++ +.|++++. |. .++. +++++.+
T Consensus 74 -~~~~~v~~~l~~~l~~~~~vvs~~~gi~~~--~l~~~~-~~~~~~v~~~p~~p~~~~~-----g~~~~~~~~~~~~~~~ 144 (247)
T 3gt0_A 74 -DLYASIINEIKEIIKNDAIIVTIAAGKSIE--STENAF-NKKVKVVRVMPNTPALVGE-----GMSALCPNEMVTEKDL 144 (247)
T ss_dssp -TTHHHHC---CCSSCTTCEEEECSCCSCHH--HHHHHH-CSCCEEEEEECCGGGGGTC-----EEEEEEECTTCCHHHH
T ss_pred -HHHHHHHHHHHhhcCCCCEEEEecCCCCHH--HHHHHh-CCCCcEEEEeCChHHHHcC-----ceEEEEeCCCCCHHHH
Confidence 589999999999999999999665555432 222233 2222222 44554433 44 3443 4788999
Q ss_pred HHHHHHHHhhCCceeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhCCCCCHHHHHHHHhcccch
Q psy9637 152 PALKPIFQKLNPSFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFML-MRQAAEIHGWKLNYGGIALMWRGGCII 230 (490)
Q Consensus 152 ~~v~~ll~~l~~~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~l-a~~a~~~~~~Gld~~~v~~i~~~g~~~ 230 (490)
++++++|+.+|. .+.+++.. ...+.-+.. -.-..+..+.|++.. +.+. |+|.+...+++..+...
T Consensus 145 ~~~~~l~~~~G~-~~~~~e~~-----~d~~~a~~g--~gpa~~~~~~eal~~a~~~~------Gl~~~~a~~~~~~~~~g 210 (247)
T 3gt0_A 145 EDVLNIFNSFGQ-TEIVSEKL-----MDVVTSVSG--SSPAYVYMIIEAMADAAVLD------GMPRNQAYKFAAQAVLG 210 (247)
T ss_dssp HHHHHHHGGGEE-EEECCGGG-----HHHHHHHHH--HHHHHHHHHHHHHHHHHHHT------TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCC-EEEeCHHH-----ccHHHHHhc--cHHHHHHHHHHHHHHHHHHc------CCCHHHHHHHHHHHHHH
Confidence 999999999998 44444320 111111111 111345566777766 6666 99999999998766544
Q ss_pred hhHhH
Q psy9637 231 RSVFL 235 (490)
Q Consensus 231 ~s~~l 235 (490)
...++
T Consensus 211 s~~~~ 215 (247)
T 3gt0_A 211 SAKMV 215 (247)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
|
| >2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.73 E-value=3.2e-17 Score=159.86 Aligned_cols=245 Identities=12% Similarity=0.037 Sum_probs=152.8
Q ss_pred CCCCCcEEEEcccHHHHHHHHHHHHCC----CeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEec
Q psy9637 1 MAAKGDIGLIGLAVMGQNLILNMNDHG----FTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLV 76 (490)
Q Consensus 1 M~~~~~IgiIGlG~MG~~lA~~L~~~G----~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~v 76 (490)
|+ +|||+|||+|.||..|+.+|+++| ++|++|||++++ .+ +..+.++.++++. +|+||+||
T Consensus 2 m~-~m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~~------~g-----~~~~~~~~~~~~~---~D~vi~~v 66 (262)
T 2rcy_A 2 ME-NIKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKKN------TT-----LNYMSSNEELARH---CDIIVCAV 66 (262)
T ss_dssp CS-SSCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSSCCS------SS-----SEECSCHHHHHHH---CSEEEECS
T ss_pred CC-CCEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCCccc------Cc-----eEEeCCHHHHHhc---CCEEEEEe
Confidence 54 479999999999999999999999 799999999876 22 3356788888877 89999999
Q ss_pred CCCchHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHH--cccccc-ccCCCCCccccccCCccCCCC---Ccch
Q psy9637 77 KAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEA--KGLLYV-GCGVSGGEDGARYGPSLMPGG---NPAA 150 (490)
Q Consensus 77 p~~~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~--~gi~~l-d~~vsGg~~~a~~G~~im~GG---~~~a 150 (490)
|+ ..+++++.++.+.+ ++.+||...++..... ..+.+.. +.++++ +.|+.++ .|.++++++ +++.
T Consensus 67 ~~-~~~~~v~~~l~~~l-~~~~vv~~~~gi~~~~--l~~~~~~~~~~v~~~p~~p~~~~-----~g~~~~~~~~~~~~~~ 137 (262)
T 2rcy_A 67 KP-DIAGSVLNNIKPYL-SSKLLISICGGLNIGK--LEEMVGSENKIVWVMPNTPCLVG-----EGSFIYCSNKNVNSTD 137 (262)
T ss_dssp CT-TTHHHHHHHSGGGC-TTCEEEECCSSCCHHH--HHHHHCTTSEEEEEECCGGGGGT-----CEEEEEEECTTCCHHH
T ss_pred CH-HHHHHHHHHHHHhc-CCCEEEEECCCCCHHH--HHHHhCCCCcEEEECCChHHHHc-----CCeEEEEeCCCCCHHH
Confidence 96 58999999999888 4555554444443332 2222322 123444 2333332 345445444 6788
Q ss_pred HHHHHHHHHhhCCceeeCCCCCCCCCCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhccc
Q psy9637 151 WPALKPIFQKLNPSFETSAPTPKPQRDKKEFLEN--IRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGGC 228 (490)
Q Consensus 151 ~~~v~~ll~~l~~~~~~~g~~g~~~g~~a~~~Kl--l~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~~~v~~i~~~g~ 228 (490)
+++++++|+.++. ++++++.. ......+ ..|.++...+.+++|+ +.+. |++.+.+.+++..+.
T Consensus 138 ~~~~~~ll~~~G~-~~~~~~~~-----~~~~~a~~~~~~~~~~~~~~al~~~---~~~~------Gl~~~~~~~~~~~~~ 202 (262)
T 2rcy_A 138 KKYVNDIFNSCGI-IHEIKEKD-----MDIATAISGCGPAYVYLFIESLIDA---GVKN------GLSRELSKNLVLQTI 202 (262)
T ss_dssp HHHHHHHHHTSEE-EEECCGGG-----HHHHHHHTTSHHHHHHHHHHHHHHH---HHHT------TCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCC-EEEeCHHH-----ccHHHHHHccHHHHHHHHHHHHHHH---HHHc------CCCHHHHHHHHHHHH
Confidence 9999999999996 77766531 1223333 2244444444444443 4455 999998888876543
Q ss_pred chhhHhHhHhHHhhccCccccccc-CChhHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHh
Q psy9637 229 IIRSVFLGNIKAAFDKNPALSNLL-LDPFFKDAIHATQSSWRAVVSQSALLGIPTPAFATALAFYDGYRS 297 (490)
Q Consensus 229 ~~~s~~l~~i~~~~~~~~~~~~~~-~~~~f~~~l~~~~kDl~~~~~~A~~~gv~~P~~~aa~~~~~~~~~ 297 (490)
.....+... ....|.+.... ..+.+ + ....++..++.|++.++.+++.+.|+++.+
T Consensus 203 ~~~~~~~~~----~~~~~~~l~d~~~~~~~--t-------~~~~l~~l~~~~~~~~~~~a~~~~~~r~~~ 259 (262)
T 2rcy_A 203 KGSVEMVKK----SDQPVQQLKDNIVSPGG--I-------TAVGLYSLEKNSFKYTVMNAVEAACEKSKA 259 (262)
T ss_dssp HHHHHHHHH----CSSCHHHHHHHHCCTTS--H-------HHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh----cCCCHHHHHHhcCCCCh--H-------HHHHHHHHHHCChHHHHHHHHHHHHHHHHH
Confidence 211112110 01223222222 12332 1 233444446668888888888888887764
|
| >3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.72 E-value=9.7e-17 Score=162.72 Aligned_cols=159 Identities=15% Similarity=0.219 Sum_probs=125.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhh-CCCCcEEEEecCCCchH
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKN-LKKPRRVMMLVKAGSAV 82 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~-l~~~dvIil~vp~~~~v 82 (490)
.++|+|||+|.||.+||++|.++|++|++|||++++.+.+.+.|.. .+.++.++++. .+.+|+||+|||. ..+
T Consensus 8 ~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~~~~a~~~G~~-----~~~~~~e~~~~a~~~aDlVilavP~-~~~ 81 (341)
T 3ktd_A 8 SRPVCILGLGLIGGSLLRDLHAANHSVFGYNRSRSGAKSAVDEGFD-----VSADLEATLQRAAAEDALIVLAVPM-TAI 81 (341)
T ss_dssp SSCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHTTCC-----EESCHHHHHHHHHHTTCEEEECSCH-HHH
T ss_pred CCEEEEEeecHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCe-----eeCCHHHHHHhcccCCCEEEEeCCH-HHH
Confidence 4789999999999999999999999999999999999888776542 46788887753 1236999999997 588
Q ss_pred HHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccc-cCCCCCc-cccc-------cCC-ccCCCC---Ccc
Q psy9637 83 DDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVG-CGVSGGE-DGAR-------YGP-SLMPGG---NPA 149 (490)
Q Consensus 83 ~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld-~~vsGg~-~~a~-------~G~-~im~GG---~~~ 149 (490)
.++++++.+. .++.+|+|++++.........+.+ .+.+|++ .|++|++ .+.. .|. .+++.+ +++
T Consensus 82 ~~vl~~l~~~-~~~~iv~Dv~Svk~~i~~~~~~~~--~~~~~v~~HPmaG~e~sG~~aa~~~Lf~g~~~iltp~~~~~~e 158 (341)
T 3ktd_A 82 DSLLDAVHTH-APNNGFTDVVSVKTAVYDAVKARN--MQHRYVGSHPMAGTANSGWSASMDGLFKRAVWVVTFDQLFDGT 158 (341)
T ss_dssp HHHHHHHHHH-CTTCCEEECCSCSHHHHHHHHHTT--CGGGEECEEECCSCC-CCGGGCCSSTTTTCEEEECCGGGTSSC
T ss_pred HHHHHHHHcc-CCCCEEEEcCCCChHHHHHHHHhC--CCCcEecCCccccccccchhhhhhHHhcCCeEEEEeCCCCChh
Confidence 9999988886 789999999988765444443333 2578998 5999876 4432 343 555544 567
Q ss_pred --------hHHHHHHHHHhhCCceeeCCCC
Q psy9637 150 --------AWPALKPIFQKLNPSFETSAPT 171 (490)
Q Consensus 150 --------a~~~v~~ll~~l~~~~~~~g~~ 171 (490)
++++++++|+.+|++++++++.
T Consensus 159 ~~~~~~~~~~~~v~~l~~~~Ga~v~~~~~~ 188 (341)
T 3ktd_A 159 DINSTWISIWKDVVQMALAVGAEVVPSRVG 188 (341)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCEEEECCHH
T ss_pred hhccchHHHHHHHHHHHHHcCCEEEEeCHH
Confidence 8999999999999998887763
|
| >2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.72 E-value=1.4e-16 Score=157.20 Aligned_cols=173 Identities=14% Similarity=0.239 Sum_probs=132.6
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC--eEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHh-hCCCCcEEEEecCCCch
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGF--TVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVK-NLKKPRRVMMLVKAGSA 81 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~-~l~~~dvIil~vp~~~~ 81 (490)
++|+|||+|.||..+|..|.++|+ +|++|||++++.+.+.+.+.. ...++++.+++. . +|+||+|||.. .
T Consensus 2 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~---~~~~~~~~~~~~~~---aDvVilavp~~-~ 74 (281)
T 2g5c_A 2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGII---DEGTTSIAKVEDFS---PDFVMLSSPVR-T 74 (281)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSC---SEEESCGGGGGGTC---CSEEEECSCHH-H
T ss_pred cEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHCCCc---ccccCCHHHHhcCC---CCEEEEcCCHH-H
Confidence 689999999999999999999999 999999999998887765532 113567777666 5 89999999995 7
Q ss_pred HHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccc-cCCCCC----ccccc----cCC-ccCC---CCCc
Q psy9637 82 VDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVG-CGVSGG----EDGAR----YGP-SLMP---GGNP 148 (490)
Q Consensus 82 v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld-~~vsGg----~~~a~----~G~-~im~---GG~~ 148 (490)
+.+++.++.+.++++.+|+|++++.........+.+.. + |++ .|++|+ |..+. .|. ++++ ++++
T Consensus 75 ~~~v~~~l~~~l~~~~iv~~~~~~~~~~~~~l~~~l~~-~--~v~~~p~~~~~~~gp~~a~~~l~~g~~~~~~~~~~~~~ 151 (281)
T 2g5c_A 75 FREIAKKLSYILSEDATVTDQGSVKGKLVYDLENILGK-R--FVGGHPIAGTEKSGVEYSLDNLYEGKKVILTPTKKTDK 151 (281)
T ss_dssp HHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGG-G--EECEEEECCCSCCSGGGCCSSTTTTCEEEECCCSSSCH
T ss_pred HHHHHHHHHhhCCCCcEEEECCCCcHHHHHHHHHhccc-c--ceeeccccCCccCChhhhhhHHhCCCCEEEecCCCCCH
Confidence 88899999888999999999998876554444454443 2 666 466653 33442 566 5665 6788
Q ss_pred chHHHHHHHHHhhCCceeeCCCCCCCCCCHHHHHHHHHHHHHHH
Q psy9637 149 AAWPALKPIFQKLNPSFETSAPTPKPQRDKKEFLENIRQALYAS 192 (490)
Q Consensus 149 ~a~~~v~~ll~~l~~~~~~~g~~g~~~g~~a~~~Kll~n~l~~~ 192 (490)
+.++.++++|+.++..++.+++.. ...++|++.|.....
T Consensus 152 ~~~~~v~~l~~~~g~~~~~~~~~~-----~d~~~~~~~~~~~~~ 190 (281)
T 2g5c_A 152 KRLKLVKRVWEDVGGVVEYMSPEL-----HDYVFGVVSHLPHAV 190 (281)
T ss_dssp HHHHHHHHHHHHTTCEEEECCHHH-----HHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHcCCEEEEcCHHH-----HHHHHHHHHHHHHHH
Confidence 999999999999999888777642 356788887776443
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=3.2e-16 Score=155.10 Aligned_cols=196 Identities=17% Similarity=0.177 Sum_probs=141.6
Q ss_pred CCCCCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHc-----------c--cCC-------CCeeccCCHH
Q psy9637 1 MAAKGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLAN-----------E--AKG-------TNIIGAHSLE 60 (490)
Q Consensus 1 M~~~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~-----------g--~~~-------~~i~~~~s~~ 60 (490)
|..++||+|||+|.||..||..|+++|++|++||+++++++.+.+. + ... .++..+++++
T Consensus 1 Mm~~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~ 80 (283)
T 4e12_A 1 MTGITNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRYSDDLA 80 (283)
T ss_dssp CCSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEEESCHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEEeCCHH
Confidence 4345799999999999999999999999999999999988876653 1 100 1245678888
Q ss_pred HHHhhCCCCcEEEEecCCCc-hHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHH----ccccccccCCCCCccc
Q psy9637 61 ELVKNLKKPRRVMMLVKAGS-AVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEA----KGLLYVGCGVSGGEDG 135 (490)
Q Consensus 61 e~v~~l~~~dvIil~vp~~~-~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~----~gi~~ld~~vsGg~~~ 135 (490)
++++. +|+||++||... ....++.++.+.++++.++++.+++.+.. +..+.+.. .|+||++.
T Consensus 81 ~~~~~---aDlVi~av~~~~~~~~~v~~~l~~~~~~~~il~s~tS~~~~~--~la~~~~~~~~~ig~h~~~p-------- 147 (283)
T 4e12_A 81 QAVKD---ADLVIEAVPESLDLKRDIYTKLGELAPAKTIFATNSSTLLPS--DLVGYTGRGDKFLALHFANH-------- 147 (283)
T ss_dssp HHTTT---CSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHH--HHHHHHSCGGGEEEEEECSS--------
T ss_pred HHhcc---CCEEEEeccCcHHHHHHHHHHHHhhCCCCcEEEECCCCCCHH--HHHhhcCCCcceEEEccCCC--------
Confidence 87766 999999999864 34566788888899999999877666533 33333321 25555542
Q ss_pred cccCC-ccCCCC---CcchHHHHHHHHHhhCCceeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9637 136 ARYGP-SLMPGG---NPAAWPALKPIFQKLNPSFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIH 211 (490)
Q Consensus 136 a~~G~-~im~GG---~~~a~~~v~~ll~~l~~~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~ 211 (490)
+..++ ..+++| +++++++++++++.++...++++... .|. ++|+.+. ..++|++.++++-
T Consensus 148 ~~~~~lvevv~~~~t~~~~~~~~~~l~~~~g~~~v~v~~~~--~g~------i~nr~~~----~~~~ea~~l~~~g---- 211 (283)
T 4e12_A 148 VWVNNTAEVMGTTKTDPEVYQQVVEFASAIGMVPIELKKEK--AGY------VLNSLLV----PLLDAAAELLVDG---- 211 (283)
T ss_dssp TTTSCEEEEEECTTSCHHHHHHHHHHHHHTTCEEEECSSCC--TTT------THHHHHH----HHHHHHHHHHHTT----
T ss_pred cccCceEEEEeCCCCCHHHHHHHHHHHHHcCCEEEEEecCC--CCE------EehHHHH----HHHHHHHHHHHhC----
Confidence 22333 333333 67899999999999999988875432 121 3444443 4688999999887
Q ss_pred CCCCCHHHHHHHHhcc
Q psy9637 212 GWKLNYGGIALMWRGG 227 (490)
Q Consensus 212 ~~Gld~~~v~~i~~~g 227 (490)
+++++++-++++.+
T Consensus 212 --~~~~~~id~~~~~~ 225 (283)
T 4e12_A 212 --IADPETIDKTWRIG 225 (283)
T ss_dssp --SCCHHHHHHHHHHH
T ss_pred --CCCHHHHHHHHHhc
Confidence 89999999998754
|
| >3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.3e-16 Score=156.09 Aligned_cols=252 Identities=15% Similarity=0.125 Sum_probs=161.3
Q ss_pred CCCCCcEEEEcccHHHHHHHHHHHHCCC---eEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecC
Q psy9637 1 MAAKGDIGLIGLAVMGQNLILNMNDHGF---TVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVK 77 (490)
Q Consensus 1 M~~~~~IgiIGlG~MG~~lA~~L~~~G~---~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp 77 (490)
|+ +|||+|||+|.||..|+.+|+++|+ +|++|||++++.+.+.+.. ++..+.+..++++. +|+||+|||
T Consensus 1 M~-~~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~~~~~~l~~~~----gi~~~~~~~~~~~~---aDvVilav~ 72 (280)
T 3tri_A 1 MN-TSNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSLDKLDFFKEKC----GVHTTQDNRQGALN---ADVVVLAVK 72 (280)
T ss_dssp -C-CSCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSSHHHHHHHHTT----CCEEESCHHHHHSS---CSEEEECSC
T ss_pred CC-CCEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCHHHHHHHHHHc----CCEEeCChHHHHhc---CCeEEEEeC
Confidence 63 4799999999999999999999999 9999999999999988752 13467788888876 999999998
Q ss_pred CCchHHHHHHhhccc-CCCCCEEEcCCCCChHHHHHHHHHHHHcccccccc-CCCCCccccccCCc-cCCC--CCcchHH
Q psy9637 78 AGSAVDDFIDKLVPL-LEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGC-GVSGGEDGARYGPS-LMPG--GNPAAWP 152 (490)
Q Consensus 78 ~~~~v~~vl~~l~~~-l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~-~vsGg~~~a~~G~~-im~G--G~~~a~~ 152 (490)
+ ..++++++++.+. ++++.+||...++.+.. .+.+.+ ..+.+++.+ | ..|.....|.+ +..| .+++.++
T Consensus 73 p-~~~~~vl~~l~~~~l~~~~iiiS~~agi~~~--~l~~~l-~~~~~vvr~mP--n~p~~v~~g~~~l~~~~~~~~~~~~ 146 (280)
T 3tri_A 73 P-HQIKMVCEELKDILSETKILVISLAVGVTTP--LIEKWL-GKASRIVRAMP--NTPSSVRAGATGLFANETVDKDQKN 146 (280)
T ss_dssp G-GGHHHHHHHHHHHHHTTTCEEEECCTTCCHH--HHHHHH-TCCSSEEEEEC--CGGGGGTCEEEEEECCTTSCHHHHH
T ss_pred H-HHHHHHHHHHHhhccCCCeEEEEecCCCCHH--HHHHHc-CCCCeEEEEec--CChHHhcCccEEEEeCCCCCHHHHH
Confidence 7 6899999999998 88888999877766533 222333 223333322 2 12222233443 3333 3578999
Q ss_pred HHHHHHHhhCCceeeCCCCCCCCCCHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhc
Q psy9637 153 ALKPIFQKLNPSFETSAPTPKPQRDKKEFLENI------RQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRG 226 (490)
Q Consensus 153 ~v~~ll~~l~~~~~~~g~~g~~~g~~a~~~Kll------~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~~~v~~i~~~ 226 (490)
.++++|+.+|..+....+ ..+..+ ..++.+..+.+++++ +.+. |++.+...++...
T Consensus 147 ~v~~l~~~iG~~~~v~~E---------~~~d~~talsgsgpa~~~~~~eal~~a---~v~~------Gl~~~~a~~l~~~ 208 (280)
T 3tri_A 147 LAESIMRAVGLVIWVSSE---------DQIEKIAALSGSGPAYIFLIMEALQEA---AEQL------GLTKETAELLTEQ 208 (280)
T ss_dssp HHHHHHGGGEEEEECSSH---------HHHHHHHHHTTSHHHHHHHHHHHHHHH---HHHT------TCCHHHHHHHHHH
T ss_pred HHHHHHHHCCCeEEECCH---------HHhhHHHHHhccHHHHHHHHHHHHHHH---HHHc------CCCHHHHHHHHHH
Confidence 999999999974433222 111111 123444444444444 3355 9999999998766
Q ss_pred ccchhhHhHhHhHHhhccCcc-cccccCChhHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHh
Q psy9637 227 GCIIRSVFLGNIKAAFDKNPA-LSNLLLDPFFKDAIHATQSSWRAVVSQSALLGIPTPAFATALAFYDGYRS 297 (490)
Q Consensus 227 g~~~~s~~l~~i~~~~~~~~~-~~~~~~~~~f~~~l~~~~kDl~~~~~~A~~~gv~~P~~~aa~~~~~~~~~ 297 (490)
...+...++.. .+..|. +.+...+|+-. ....++..++.|++..+.++....++++++
T Consensus 209 t~~G~a~~~~~----~~~~p~~l~~~v~spgGt---------T~~~l~~le~~g~~~~~~~av~aa~~r~~e 267 (280)
T 3tri_A 209 TVLGAARMALE----TEQSVVQLRQFVTSPGGT---------TEQAIKVLESGNLRELFIKALTAAVNRAKE 267 (280)
T ss_dssp HHHHHHHHHHT----CSSCHHHHHHHHCCTTSH---------HHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh----cCCCHHHHHHhccCCChH---------HHHHHHHHHHCChHHHHHHHHHHHHHHHHH
Confidence 54444444421 011121 11223344321 223555566777777777777777776653
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.4e-17 Score=170.20 Aligned_cols=142 Identities=22% Similarity=0.398 Sum_probs=108.6
Q ss_pred ceeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHhCCCCCHHHHHHHHh
Q psy9637 164 SFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQA------------------AEIHGWKLNYGGIALMWR 225 (490)
Q Consensus 164 ~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a------------------~~~~~~Gld~~~v~~i~~ 225 (490)
.++++|+.| .++++|+++|+++++.+++++|++.+++++ +++|+||+|+++++++|+
T Consensus 196 ~~~~~G~~G-----~g~~~Kl~~n~l~~~~i~~~aE~~~la~~a~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~i~~~~~ 270 (358)
T 4e21_A 196 GYLHCGPSG-----AGHFVKMVHNGIEYGLMAAYAEGLNILHHANAGKEGQGADAETAPLRNPDFYRYDLDLADITEVWR 270 (358)
T ss_dssp TEEEEESTT-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCC--------------CGGGCCCCCCHHHHHHHHT
T ss_pred ceEEECCcc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccchhcccCCCHHHHHHHHh
Confidence 577888876 689999999999999999999999999998 899999999999999999
Q ss_pred cccchhhHhHhHhHHhhccCcccccccCChhHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHH-HHHHHHhCCCh-hh
Q psy9637 226 GGCIIRSVFLGNIKAAFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSALLGIPTPAFATALA-FYDGYRSKRLP-AN 303 (490)
Q Consensus 226 ~g~~~~s~~l~~i~~~~~~~~~~~~~~~~~~f~~~l~~~~kDl~~~~~~A~~~gv~~P~~~aa~~-~~~~~~~~g~~-~~ 303 (490)
.||+++|++++.+...+.++|.+.+. ...+... .+.++++..|.+.|+|+|++++++. +|.+ +.+.++ ++
T Consensus 271 ~g~~~~s~~l~~~~~~~~~~p~~~~~------~~~~~d~-g~~r~~~~~A~~~gvp~p~~~~al~~~~~s-~~~~~~~~~ 342 (358)
T 4e21_A 271 RGSVISSWLLDLSATALLDSPDLQEF------QGRVSDS-GEGRWTVAAAIDEGVPAHVLSSALYERFSS-RGEDDFANR 342 (358)
T ss_dssp TTSTTCBHHHHHHHHHHHHCTTCTTC--------CCCCC-SHHHHHHHHHHHHTCCCHHHHHHHHHHHHH-TTTTHHHHH
T ss_pred CccHHHHHHHHHHHHHHhhCCChHHH------HHHHHhc-CcHHHHHHHHHHcCCChHHHHHHHHHHHHH-CCCcccHHH
Confidence 99999999999999898887654321 1111111 1247899999999999999998874 3443 445555 57
Q ss_pred hHHHHHHhhcccccc
Q psy9637 304 LLQAQRDYFGAHTYE 318 (490)
Q Consensus 304 ~~~a~rd~fgah~~~ 318 (490)
++|+||||||+|+++
T Consensus 343 l~~a~r~~fG~h~~~ 357 (358)
T 4e21_A 343 LLSAMRYEFGGHREK 357 (358)
T ss_dssp HHHHHC---------
T ss_pred HHHHHHHhcCCCCCC
Confidence 999999999999964
|
| >3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A | Back alignment and structure |
|---|
Probab=99.70 E-value=1.6e-16 Score=157.39 Aligned_cols=160 Identities=23% Similarity=0.332 Sum_probs=123.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHHC--CCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCch
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDH--GFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSA 81 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~--G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~ 81 (490)
+|+|+|||+|.||..+|.+|.++ |++|++|||++++.+.+.+.+.. ...+.+++++++. +|+||+|||+. .
T Consensus 6 ~~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~---~~~~~~~~~~~~~---aDvVilavp~~-~ 78 (290)
T 3b1f_A 6 EKTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIALERGIV---DEATADFKVFAAL---ADVIILAVPIK-K 78 (290)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHHTTSC---SEEESCTTTTGGG---CSEEEECSCHH-H
T ss_pred cceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHHcCCc---ccccCCHHHhhcC---CCEEEEcCCHH-H
Confidence 57999999999999999999988 68999999999999888765431 0245677777766 89999999995 6
Q ss_pred HHHHHHhhccc-CCCCCEEEcCCCCChHHHHHHHHHHHHccccccc-cCCCC----Cccccc----cCC-c---cCCCCC
Q psy9637 82 VDDFIDKLVPL-LEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVG-CGVSG----GEDGAR----YGP-S---LMPGGN 147 (490)
Q Consensus 82 v~~vl~~l~~~-l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld-~~vsG----g~~~a~----~G~-~---im~GG~ 147 (490)
++++++++.+. ++++.+|+|++|+.+.......+.+..++++|++ .|++| |+..+. .|. . ...+++
T Consensus 79 ~~~v~~~l~~~~l~~~~ivi~~~~~~~~~~~~l~~~l~~~~~~~v~~~P~~g~~~~g~~~a~~~l~~g~~~~~~~~~~~~ 158 (290)
T 3b1f_A 79 TIDFIKILADLDLKEDVIITDAGSTKYEIVRAAEYYLKDKPVQFVGSHPMAGSHKSGAVAANVNLFENAYYIFSPSCLTK 158 (290)
T ss_dssp HHHHHHHHHTSCCCTTCEEECCCSCHHHHHHHHHHHHTTSSCEEEEEEEC-----CCTTSCCTTTTTTSEEEEEECTTCC
T ss_pred HHHHHHHHHhcCCCCCCEEEECCCCchHHHHHHHHhccccCCEEEEeCCcCCCCcchHHHhhHHHhCCCeEEEecCCCCC
Confidence 79999999898 9999999999987765554444544434788887 47766 454443 555 2 234678
Q ss_pred cchHHHHHHHHHhhCCceeeCCC
Q psy9637 148 PAAWPALKPIFQKLNPSFETSAP 170 (490)
Q Consensus 148 ~~a~~~v~~ll~~l~~~~~~~g~ 170 (490)
++.++.++++|+.++..++.+++
T Consensus 159 ~~~~~~v~~l~~~~G~~~~~~~~ 181 (290)
T 3b1f_A 159 PNTIPALQDLLSGLHARYVEIDA 181 (290)
T ss_dssp TTHHHHHHHHTGGGCCEEEECCH
T ss_pred HHHHHHHHHHHHHcCCEEEEcCH
Confidence 89999999999999998777654
|
| >3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.69 E-value=9.3e-17 Score=170.20 Aligned_cols=192 Identities=13% Similarity=0.175 Sum_probs=143.1
Q ss_pred CC-CCCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHc-----------ccCC--------CCeeccCCHH
Q psy9637 1 MA-AKGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLAN-----------EAKG--------TNIIGAHSLE 60 (490)
Q Consensus 1 M~-~~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~-----------g~~~--------~~i~~~~s~~ 60 (490)
|+ .++||||||+|.||.+||.+|+++||+|++||+++++++.+.+. +... .++..+++++
T Consensus 1 Msm~~~kVgVIGaG~MG~~IA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 80 (483)
T 3mog_A 1 MSLNVQTVAVIGSGTMGAGIAEVAASHGHQVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIPVTDIH 80 (483)
T ss_dssp ---CCCCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEEECCGG
T ss_pred CCCCCCEEEEECcCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeEeCCHH
Confidence 54 35689999999999999999999999999999999998886542 1100 1345667775
Q ss_pred HHHhhCCCCcEEEEecCCCchHH-HHHHhhcccCCCCCEEE-cCCCCChHHHHHHHHHH----HHccccccc-cCCCCCc
Q psy9637 61 ELVKNLKKPRRVMMLVKAGSAVD-DFIDKLVPLLEKGDIII-DGGNSEYQDTDRRSKAL----EAKGLLYVG-CGVSGGE 133 (490)
Q Consensus 61 e~v~~l~~~dvIil~vp~~~~v~-~vl~~l~~~l~~g~iiI-d~s~~~~~~~~~~~~~l----~~~gi~~ld-~~vsGg~ 133 (490)
+ ++. +|+||+|||....++ +++.++.+.++++.+|+ ++|+..+ + ++.+.+ ...|.||++ +|++
T Consensus 81 ~-~~~---aDlVIeAVpe~~~vk~~v~~~l~~~~~~~~IlasntSti~i-~--~ia~~~~~p~~~ig~hf~~Pa~v~--- 150 (483)
T 3mog_A 81 A-LAA---ADLVIEAASERLEVKKALFAQLAEVCPPQTLLTTNTSSISI-T--AIAAEIKNPERVAGLHFFNPAPVM--- 150 (483)
T ss_dssp G-GGG---CSEEEECCCCCHHHHHHHHHHHHHHSCTTCEEEECCSSSCH-H--HHTTTSSSGGGEEEEEECSSTTTC---
T ss_pred H-hcC---CCEEEEcCCCcHHHHHHHHHHHHHhhccCcEEEecCCCCCH-H--HHHHHccCccceEEeeecChhhhC---
Confidence 3 444 899999999976664 67788988999999985 4555543 2 222222 123777877 4543
Q ss_pred cccccCC-ccCCCC---CcchHHHHHHHHHhhCCceeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9637 134 DGARYGP-SLMPGG---NPAAWPALKPIFQKLNPSFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAE 209 (490)
Q Consensus 134 ~~a~~G~-~im~GG---~~~a~~~v~~ll~~l~~~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~ 209 (490)
+ ..+++| ++++++++.++++.++..++++++.+ | +++||++.. .++|++.++++.
T Consensus 151 ------~Lvevv~g~~Ts~e~~~~~~~l~~~lGk~~v~v~d~~---G------fi~Nr~l~~----~~~Ea~~l~~~g-- 209 (483)
T 3mog_A 151 ------KLVEVVSGLATAAEVVEQLCELTLSWGKQPVRCHSTP---G------FIVNRVARP----YYSEAWRALEEQ-- 209 (483)
T ss_dssp ------CEEEEEECSSCCHHHHHHHHHHHHHTTCEEEEEESCT---T------TTHHHHTHH----HHHHHHHHHHTT--
T ss_pred ------CeEEEecCCCCCHHHHHHHHHHHHHhCCEEEEEeccC---c------chHHHHHHH----HHHHHHHHHHhC--
Confidence 3 455666 78999999999999999988887653 2 566776665 689999999998
Q ss_pred HhCCCCCHHHHHHHHhcc
Q psy9637 210 IHGWKLNYGGIALMWRGG 227 (490)
Q Consensus 210 ~~~~Gld~~~v~~i~~~g 227 (490)
++|++++-++++.+
T Consensus 210 ----~~~~~~id~a~~~~ 223 (483)
T 3mog_A 210 ----VAAPEVIDAALRDG 223 (483)
T ss_dssp ----CSCHHHHHHHHHHT
T ss_pred ----CCCHHHHHHHHHhc
Confidence 99999999999754
|
| >2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.69 E-value=9.9e-16 Score=150.78 Aligned_cols=169 Identities=16% Similarity=0.283 Sum_probs=127.0
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
|+|+|||+|.||..++..|.++|++|++|||++++.+.+.+.+.. ...+.++.++ .. +|+||+|+|+ ..+.+
T Consensus 1 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~---~~~~~~~~~~-~~---~D~vi~av~~-~~~~~ 72 (279)
T 2f1k_A 1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLV---DEAGQDLSLL-QT---AKIIFLCTPI-QLILP 72 (279)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTSC---SEEESCGGGG-TT---CSEEEECSCH-HHHHH
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHhCCCC---ccccCCHHHh-CC---CCEEEEECCH-HHHHH
Confidence 489999999999999999999999999999999999888765431 1235677776 55 9999999998 48899
Q ss_pred HHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccccccc-CCCCCc----cccc----cCC-ccCC---CCCcchH
Q psy9637 85 FIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGC-GVSGGE----DGAR----YGP-SLMP---GGNPAAW 151 (490)
Q Consensus 85 vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~-~vsGg~----~~a~----~G~-~im~---GG~~~a~ 151 (490)
+++++.+.++++.+|+|+++..........+. ..++++. |++|+. ..+. .|. ++++ +++++..
T Consensus 73 ~~~~l~~~~~~~~~vv~~~~~~~~~~~~~~~~----~~~~~~~~p~~g~~~~gp~~a~~~~~~g~~~~~~~~~~~~~~~~ 148 (279)
T 2f1k_A 73 TLEKLIPHLSPTAIVTDVASVKTAIAEPASQL----WSGFIGGHPMAGTAAQGIDGAEENLFVNAPYVLTPTEYTDPEQL 148 (279)
T ss_dssp HHHHHGGGSCTTCEEEECCSCCHHHHHHHHHH----STTCEEEEECCCCSCSSGGGCCTTTTTTCEEEEEECTTCCHHHH
T ss_pred HHHHHHhhCCCCCEEEECCCCcHHHHHHHHHH----hCCEeecCcccCCccCCHHHHhHHHhCCCcEEEecCCCCCHHHH
Confidence 99999999999999999988765543333232 2267766 776543 2222 343 3332 4578899
Q ss_pred HHHHHHHHhhCCceeeCCCCCCCCCCHHHHHHHHHHHHH
Q psy9637 152 PALKPIFQKLNPSFETSAPTPKPQRDKKEFLENIRQALY 190 (490)
Q Consensus 152 ~~v~~ll~~l~~~~~~~g~~g~~~g~~a~~~Kll~n~l~ 190 (490)
+.++++|+.++.+++.+++.. ...+.+++.|...
T Consensus 149 ~~v~~l~~~~g~~~~~~~~~~-----~~~~~~~~~~~p~ 182 (279)
T 2f1k_A 149 ACLRSVLEPLGVKIYLCTPAD-----HDQAVAWISHLPV 182 (279)
T ss_dssp HHHHHHHGGGTCEEEECCHHH-----HHHHHHHHTHHHH
T ss_pred HHHHHHHHHcCCEEEEcCHHH-----HHHHHHHHhhHHH
Confidence 999999999998888777542 4567788877633
|
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=4.8e-16 Score=155.18 Aligned_cols=192 Identities=15% Similarity=0.151 Sum_probs=138.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH-----------cccCC-------------CCeeccCCH
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLA-----------NEAKG-------------TNIIGAHSL 59 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~-----------~g~~~-------------~~i~~~~s~ 59 (490)
+++|+|||+|.||..||..|+++||+|++||+++++++.+.+ .+... .++..++++
T Consensus 15 ~~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~ 94 (302)
T 1f0y_A 15 VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTDA 94 (302)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESCH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhceEEecCH
Confidence 468999999999999999999999999999999998776432 22100 134567788
Q ss_pred HHHHhhCCCCcEEEEecCCCchH-HHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHH----HccccccccCCCCCcc
Q psy9637 60 EELVKNLKKPRRVMMLVKAGSAV-DDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALE----AKGLLYVGCGVSGGED 134 (490)
Q Consensus 60 ~e~v~~l~~~dvIil~vp~~~~v-~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~----~~gi~~ld~~vsGg~~ 134 (490)
++.++. +|+||+|||....+ +.++.++.+.++++.+|+..+++.+.. +..+.+. ..|.+|++ |+.
T Consensus 95 ~~~~~~---aD~Vi~avp~~~~~~~~v~~~l~~~~~~~~iv~s~ts~i~~~--~l~~~~~~~~~~~g~h~~~-P~~---- 164 (302)
T 1f0y_A 95 ASVVHS---TDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQIT--SIANATTRQDRFAGLHFFN-PVP---- 164 (302)
T ss_dssp HHHTTS---CSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSSCHH--HHHTTSSCGGGEEEEEECS-STT----
T ss_pred HHhhcC---CCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHH--HHHHhcCCcccEEEEecCC-Ccc----
Confidence 777665 99999999987554 467788888898999998766655433 2222221 12566665 321
Q ss_pred ccccCC--ccCCC--CCcchHHHHHHHHHhhCCceeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9637 135 GARYGP--SLMPG--GNPAAWPALKPIFQKLNPSFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEI 210 (490)
Q Consensus 135 ~a~~G~--~im~G--G~~~a~~~v~~ll~~l~~~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~ 210 (490)
.++ .++.| .++++++.+.++++.++..++++++.. | ++++|++. ..++|++.++++.
T Consensus 165 ---~~~~~~i~~g~~~~~e~~~~~~~l~~~~G~~~v~~~~~~---g------~i~nr~l~----~~~~Ea~~l~~~g--- 225 (302)
T 1f0y_A 165 ---VMKLVEVIKTPMTSQKTFESLVDFSKALGKHPVSCKDTP---G------FIVNRLLV----PYLMEAIRLYERG--- 225 (302)
T ss_dssp ---TCCEEEEECCTTCCHHHHHHHHHHHHHTTCEEEEECSCT---T------TTHHHHHH----HHHHHHHHHHHTT---
T ss_pred ---cCceEEEeCCCCCCHHHHHHHHHHHHHcCCceEEecCcc---c------ccHHHHHH----HHHHHHHHHHHcC---
Confidence 123 34444 378999999999999998887776531 1 34455543 4689999999997
Q ss_pred hCCCCCHHHHHHHHhcc
Q psy9637 211 HGWKLNYGGIALMWRGG 227 (490)
Q Consensus 211 ~~~Gld~~~v~~i~~~g 227 (490)
+++++++-++++.|
T Consensus 226 ---~~~~~~id~~~~~g 239 (302)
T 1f0y_A 226 ---DASKEDIDTAMKLG 239 (302)
T ss_dssp ---SSCHHHHHHHHHHH
T ss_pred ---CCCHHHHHHHHHhC
Confidence 89999998888643
|
| >3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=99.68 E-value=4.6e-16 Score=157.66 Aligned_cols=260 Identities=16% Similarity=0.184 Sum_probs=160.3
Q ss_pred CCCCCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCC--------CCeeccCCHHHHHhhCCCCcEE
Q psy9637 1 MAAKGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKG--------TNIIGAHSLEELVKNLKKPRRV 72 (490)
Q Consensus 1 M~~~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~--------~~i~~~~s~~e~v~~l~~~dvI 72 (490)
|+ +|||+|||+|.||..+|..|+++|++|++|+|+ +..+.+.+.+... .++..+++++++ . .+|+|
T Consensus 1 M~-~mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~---~~D~V 74 (335)
T 3ghy_A 1 MS-LTRICIVGAGAVGGYLGARLALAGEAINVLARG-ATLQALQTAGLRLTEDGATHTLPVRATHDAAAL-G---EQDVV 74 (335)
T ss_dssp -C-CCCEEEESCCHHHHHHHHHHHHTTCCEEEECCH-HHHHHHHHTCEEEEETTEEEEECCEEESCHHHH-C---CCSEE
T ss_pred CC-CCEEEEECcCHHHHHHHHHHHHCCCEEEEEECh-HHHHHHHHCCCEEecCCCeEEEeeeEECCHHHc-C---CCCEE
Confidence 64 579999999999999999999999999999996 6777777654320 112335677663 4 38999
Q ss_pred EEecCCCchHHHHHHhhcccCCCCCEEEcCCCCCh-----------------HHHH-HHHHHHHHc----cccccccCCC
Q psy9637 73 MMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEY-----------------QDTD-RRSKALEAK----GLLYVGCGVS 130 (490)
Q Consensus 73 il~vp~~~~v~~vl~~l~~~l~~g~iiId~s~~~~-----------------~~~~-~~~~~l~~~----gi~~ld~~vs 130 (490)
|+|||+ .+++++++.+.+.+.++.+||...|+.+ -+.. .+.+.+... |+.+..+-.+
T Consensus 75 ilavk~-~~~~~~~~~l~~~l~~~~~iv~~~nGi~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~v~~gv~~~~a~~~ 153 (335)
T 3ghy_A 75 IVAVKA-PALESVAAGIAPLIGPGTCVVVAMNGVPWWFFDRPGPLQGQRLQAVDPHGRIAQAIPTRHVLGCVVHLTCATV 153 (335)
T ss_dssp EECCCH-HHHHHHHGGGSSSCCTTCEEEECCSSSCTTTTCSSSTTTTCCCTTTCTTSHHHHHSCGGGEEEEEECCCEEES
T ss_pred EEeCCc-hhHHHHHHHHHhhCCCCCEEEEECCCCccccccccccccccccccCCcHHHHHHhcCcccEEEEEEEEEEEEc
Confidence 999999 5899999999999999999999999852 0111 222222211 2223333333
Q ss_pred CCccccccCC-ccCC----CCCcchHHHHHHHHHhhCCceeeCCCCCCCCCCHHHHHHHHHHH-----------------
Q psy9637 131 GGEDGARYGP-SLMP----GGNPAAWPALKPIFQKLNPSFETSAPTPKPQRDKKEFLENIRQA----------------- 188 (490)
Q Consensus 131 Gg~~~a~~G~-~im~----GG~~~a~~~v~~ll~~l~~~~~~~g~~g~~~g~~a~~~Kll~n~----------------- 188 (490)
+.......+. .+.+ +.+.+..+.+..+|+.-+.++...... ....+.|++.|+
T Consensus 154 ~pg~v~~~~~g~~~iG~~~~~~~~~~~~l~~~l~~~g~~~~~~~di-----~~~~w~Kl~~na~~N~l~al~~~~~g~~~ 228 (335)
T 3ghy_A 154 SPGHIRHGNGRRLILGEPAGGASPRLASIAALFGRAGLQAECSEAI-----QRDIWFKLWGNMTMNPVSVLTGATCDRIL 228 (335)
T ss_dssp STTEEEECSCCEEEEECTTCSCCHHHHHHHHHHHHTTCEEEECSCH-----HHHHHHHHHTTTTHHHHHHHHCCCHHHHH
T ss_pred CCcEEEECCCCeEEEecCCCCcCHHHHHHHHHHHhCCCCcEeCchH-----HHHHHHHHHHHhhhhHHHHHhCCChHHHh
Confidence 3222222222 2333 344567788999999887766554432 134566665443
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHhCCCCCHH----HHHHHHhcccchhhHhHhHhHHhhccCcccccccCChhH-HH
Q psy9637 189 ----LYASKIVSYAQGFMLMRQAAEIHGWKLNYG----GIALMWRGGCIIRSVFLGNIKAAFDKNPALSNLLLDPFF-KD 259 (490)
Q Consensus 189 ----l~~~~~~~~aE~~~la~~a~~~~~~Gld~~----~v~~i~~~g~~~~s~~l~~i~~~~~~~~~~~~~~~~~~f-~~ 259 (490)
........+.|+..++++. |+++. .+.++.+..+..+|.|+++ +..+- ..
T Consensus 229 ~~~~~~~l~~~~~~E~~~va~a~------G~~~~~~~~~~~~~~~~~~~~~sSM~qD---------------~~~gr~~t 287 (335)
T 3ghy_A 229 DDPLVSAFCLAVMAEAKAIGARI------GCPIEQSGEARSAVTRQLGAFKTSMLQD---------------AEAGRGPL 287 (335)
T ss_dssp HSHHHHHHHHHHHHHHHHHHHTT------TCCCCSCHHHHHHHHHTTCSCCCTTTC--------------------CCCC
T ss_pred cChHHHHHHHHHHHHHHHHHHHc------CCCCCccHHHHHHHHhccCCCCcHHHHH---------------HHcCCCCc
Confidence 2344566777888888777 65442 2222222111111111111 11111 11
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Q psy9637 260 AIHATQSSWRAVVSQSALLGIPTPAFATALAFYDGYR 296 (490)
Q Consensus 260 ~l~~~~kDl~~~~~~A~~~gv~~P~~~aa~~~~~~~~ 296 (490)
+++. =...+++.|+++|+++|..+..+++++...
T Consensus 288 Eid~---i~G~vv~~a~~~gv~~P~~~~l~~li~~~e 321 (335)
T 3ghy_A 288 EIDA---LVASVREIGLHVGVPTPQIDTLLGLVRLHA 321 (335)
T ss_dssp CHHH---HTHHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred hHHH---HhhHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 1211 256789999999999999999999887653
|
| >3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.68 E-value=8.5e-16 Score=161.02 Aligned_cols=189 Identities=11% Similarity=0.066 Sum_probs=139.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHH--------HHHHcccC--------CCCeeccCCHHHHHhhCC
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVD--------SFLANEAK--------GTNIIGAHSLEELVKNLK 67 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~--------~l~~~g~~--------~~~i~~~~s~~e~v~~l~ 67 (490)
++||+|||+|.||.+||.+|+++|++|++||+++++.. .+.+.+.. ..++..+++++ .++
T Consensus 54 i~kVaVIGaG~MG~~IA~~la~aG~~V~l~D~~~e~a~~~i~~~l~~~~~~G~l~~~~~~~~~~~i~~t~dl~-al~--- 129 (460)
T 3k6j_A 54 VNSVAIIGGGTMGKAMAICFGLAGIETFLVVRNEQRCKQELEVMYAREKSFKRLNDKRIEKINANLKITSDFH-KLS--- 129 (460)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTTEEEESCGG-GCT---
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEECcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcceEEeCCHH-HHc---
Confidence 46899999999999999999999999999999998432 23333321 12455677775 334
Q ss_pred CCcEEEEecCCCchHH-HHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHH----HccccccccCCCCCccccccCC--
Q psy9637 68 KPRRVMMLVKAGSAVD-DFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALE----AKGLLYVGCGVSGGEDGARYGP-- 140 (490)
Q Consensus 68 ~~dvIil~vp~~~~v~-~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~----~~gi~~ld~~vsGg~~~a~~G~-- 140 (490)
.+|+||.|||.+..++ .++.++.+.++++.||++.+++.+.. ++.+.+. ..|+||++ |+. ..+
T Consensus 130 ~aDlVIeAVpe~~~vk~~v~~~l~~~~~~~aIlasnTSsl~i~--~ia~~~~~p~r~iG~Hffn-Pv~-------~m~Lv 199 (460)
T 3k6j_A 130 NCDLIVESVIEDMKLKKELFANLENICKSTCIFGTNTSSLDLN--EISSVLRDPSNLVGIHFFN-PAN-------VIRLV 199 (460)
T ss_dssp TCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHH--HHHTTSSSGGGEEEEECCS-STT-------TCCEE
T ss_pred cCCEEEEcCCCCHHHHHHHHHHHHhhCCCCCEEEecCCChhHH--HHHHhccCCcceEEEEecc-hhh-------hCCEE
Confidence 4999999999876665 56688999999999998766665543 2222221 23788887 543 122
Q ss_pred ccCCCC--CcchHHHHHHHHHhhCCceeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHH
Q psy9637 141 SLMPGG--NPAAWPALKPIFQKLNPSFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYG 218 (490)
Q Consensus 141 ~im~GG--~~~a~~~v~~ll~~l~~~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~~ 218 (490)
-++.|. ++++++++.++++.++..++++++.. + .++|+++.. .++|++.++++. |++++
T Consensus 200 EIv~g~~Ts~e~~~~~~~l~~~lGk~~v~v~d~p------G---fi~Nril~~----~~~EA~~l~~~~------Ga~~e 260 (460)
T 3k6j_A 200 EIIYGSHTSSQAIATAFQACESIKKLPVLVGNCK------S---FVFNRLLHV----YFDQSQKLMYEY------GYLPH 260 (460)
T ss_dssp EEECCSSCCHHHHHHHHHHHHHTTCEEEEESSCC------H---HHHHHHHHH----HHHHHHHHHHTS------CCCHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHHhCCEEEEEeccc------H---HHHHHHHHH----HHHHHHHHHHHc------CCCHH
Confidence 456663 78999999999999999988887632 1 245555543 578999999888 99999
Q ss_pred HHHHHHh
Q psy9637 219 GIALMWR 225 (490)
Q Consensus 219 ~v~~i~~ 225 (490)
++-++++
T Consensus 261 ~ID~a~~ 267 (460)
T 3k6j_A 261 QIDKIIT 267 (460)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999986
|
| >3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=99.68 E-value=2e-15 Score=151.86 Aligned_cols=258 Identities=17% Similarity=0.151 Sum_probs=162.0
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCC--------CCeeccCCHHHHHhhCCCCcEEEEe
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKG--------TNIIGAHSLEELVKNLKKPRRVMML 75 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~--------~~i~~~~s~~e~v~~l~~~dvIil~ 75 (490)
+|||+|||+|.||..+|..|+++|++|++| +++++++.+.+.+... .++..++++++ +. .+|+||++
T Consensus 19 ~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~-~~---~~D~vila 93 (318)
T 3hwr_A 19 GMKVAIMGAGAVGCYYGGMLARAGHEVILI-ARPQHVQAIEATGLRLETQSFDEQVKVSASSDPSA-VQ---GADLVLFC 93 (318)
T ss_dssp -CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CCHHHHHHHHHHCEEEECSSCEEEECCEEESCGGG-GT---TCSEEEEC
T ss_pred CCcEEEECcCHHHHHHHHHHHHCCCeEEEE-EcHhHHHHHHhCCeEEEcCCCcEEEeeeeeCCHHH-cC---CCCEEEEE
Confidence 579999999999999999999999999999 9999999888765320 12233456554 33 48999999
Q ss_pred cCCCchHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHc---cccccccCCCCCccccccCC-ccCCCCCcchH
Q psy9637 76 VKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAK---GLLYVGCGVSGGEDGARYGP-SLMPGGNPAAW 151 (490)
Q Consensus 76 vp~~~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~---gi~~ld~~vsGg~~~a~~G~-~im~GG~~~a~ 151 (490)
||+. +++++++.+.+.+.++.+||...|+.... ....+.+.+. |+.+..+-.+|.......+. .+.+|. .+..
T Consensus 94 vk~~-~~~~~l~~l~~~l~~~~~iv~~~nGi~~~-~~l~~~~~~~vl~g~~~~~a~~~gP~~~~~~~~g~~~ig~-~~~~ 170 (318)
T 3hwr_A 94 VKST-DTQSAALAMKPALAKSALVLSLQNGVENA-DTLRSLLEQEVAAAVVYVATEMAGPGHVRHHGRGELVIEP-TSHG 170 (318)
T ss_dssp CCGG-GHHHHHHHHTTTSCTTCEEEEECSSSSHH-HHHHHHCCSEEEEEEEEEEEEEEETTEEEEEEEEEEEECC-CTTT
T ss_pred cccc-cHHHHHHHHHHhcCCCCEEEEeCCCCCcH-HHHHHHcCCcEEEEEEEEeEEEcCCeEEEEcCCceEEEcC-CHHH
Confidence 9995 89999999999999999999999987543 2222333111 11122222232211112222 233444 4556
Q ss_pred HHHHHHHHhhCCceeeCCCCCCCCCCHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHH
Q psy9637 152 PALKPIFQKLNPSFETSAPTPKPQRDKKEFLENIRQALYAS---------------------KIVSYAQGFMLMRQAAEI 210 (490)
Q Consensus 152 ~~v~~ll~~l~~~~~~~g~~g~~~g~~a~~~Kll~n~l~~~---------------------~~~~~aE~~~la~~a~~~ 210 (490)
+.+.++|+..+.++...... ....+.|++.|+.... ....+.|+..++++.
T Consensus 171 ~~l~~~l~~~~~~~~~~~Di-----~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~~~va~a~--- 242 (318)
T 3hwr_A 171 ANLAAIFAAAGVPVETSDNV-----RGALWAKLILNCAYNALSAITQLPYGRLVRGEGVEAVMRDVMEECFAVARAE--- 242 (318)
T ss_dssp HHHHHHHHHTTCCEEECSCH-----HHHHHHHHHHHHHHHHHHHHHTCCHHHHTTSTTHHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHhCCCCcEechHH-----HHHHHHHHHHHhhhhHHHHHHCCCHHHHhcChhHHHHHHHHHHHHHHHHHHc---
Confidence 78999999887766654443 2467889888875433 234456666666665
Q ss_pred hCCCCCHH---HHHHHHhcccchhhHhHhHhHHhhccCcccccccCChhHHHHHHHHHHHHHHHHHHHHHcCCCchHHHH
Q psy9637 211 HGWKLNYG---GIALMWRGGCIIRSVFLGNIKAAFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSALLGIPTPAFAT 287 (490)
Q Consensus 211 ~~~Gld~~---~v~~i~~~g~~~~s~~l~~i~~~~~~~~~~~~~~~~~~f~~~l~~~~kDl~~~~~~A~~~gv~~P~~~a 287 (490)
|..++.+ .+.++...-.-.+|.|++++... +..+-.+ =...+++.|+++|+++|..+.
T Consensus 243 -G~~l~~~~~~~~~~~~~~~~~~~sSM~qD~~~g---------r~tEid~---------i~G~vv~~a~~~gv~tP~~~~ 303 (318)
T 3hwr_A 243 -GVKLPDDVALAIRRIAETMPRQSSSTAQDLARG---------KRSEIDH---------LNGLIVRRGDALGIPVPANRV 303 (318)
T ss_dssp -TCCCCTTHHHHHHHHHHHSTTCCCHHHHHHHTT---------CCCSGGG---------THHHHHHHHHHTTCCCHHHHH
T ss_pred -CCCCChHHHHHHHHHHHhcCCCCcHHHHHHHcC---------ChhHHHH---------HHHHHHHHHHHhCCCCcHHHH
Confidence 3333333 22222221112223333332211 0001000 145689999999999999999
Q ss_pred HHHHHHHHH
Q psy9637 288 ALAFYDGYR 296 (490)
Q Consensus 288 a~~~~~~~~ 296 (490)
.+++++...
T Consensus 304 l~~ll~~~e 312 (318)
T 3hwr_A 304 LHALVRLIE 312 (318)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999888654
|
| >3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=99.68 E-value=2e-15 Score=151.44 Aligned_cols=259 Identities=14% Similarity=0.142 Sum_probs=158.5
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccC----CC-----CeeccCCHHHHHhhCCCCcEEEEe
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAK----GT-----NIIGAHSLEELVKNLKKPRRVMML 75 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~----~~-----~i~~~~s~~e~v~~l~~~dvIil~ 75 (490)
|||+|||+|.||..+|..|+++|++|++|+|++ .+.+.+.|.. .. ++..++++++ +. .+|+||++
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~--~~~i~~~g~~~~~~~g~~~~~~~~~~~~~~~-~~---~~D~vila 76 (312)
T 3hn2_A 3 LRIAIVGAGALGLYYGALLQRSGEDVHFLLRRD--YEAIAGNGLKVFSINGDFTLPHVKGYRAPEE-IG---PMDLVLVG 76 (312)
T ss_dssp -CEEEECCSTTHHHHHHHHHHTSCCEEEECSTT--HHHHHHTCEEEEETTCCEEESCCCEESCHHH-HC---CCSEEEEC
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCc--HHHHHhCCCEEEcCCCeEEEeeceeecCHHH-cC---CCCEEEEe
Confidence 689999999999999999999999999999986 3666665432 01 1223456654 33 38999999
Q ss_pred cCCCchHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHc----cccccccCCCCCccccccCC-ccCC----CC
Q psy9637 76 VKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAK----GLLYVGCGVSGGEDGARYGP-SLMP----GG 146 (490)
Q Consensus 76 vp~~~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~----gi~~ld~~vsGg~~~a~~G~-~im~----GG 146 (490)
||+. +++++++.+.+.+.++.+||...|+.... ....+.+... ++.++.+-.+|.-.....++ .+.+ +.
T Consensus 77 vk~~-~~~~~l~~l~~~l~~~~~iv~l~nGi~~~-~~l~~~~~~~~v~~~~~~~~a~~~~p~~v~~~~~g~~~ig~~~~~ 154 (312)
T 3hn2_A 77 LKTF-ANSRYEELIRPLVEEGTQILTLQNGLGNE-EALATLFGAERIIGGVAFLCSNRGEPGEVHHLGAGRIILGEFLPR 154 (312)
T ss_dssp CCGG-GGGGHHHHHGGGCCTTCEEEECCSSSSHH-HHHHHHTCGGGEEEEEEEEECCBCSSSEEEECEEEEEEEEESSCC
T ss_pred cCCC-CcHHHHHHHHhhcCCCCEEEEecCCCCcH-HHHHHHCCCCcEEEEEEEeeeEEcCCcEEEECCCCeEEEecCCCC
Confidence 9994 88899999999999999999999987322 2222333221 23333333333222222233 3333 34
Q ss_pred CcchHHHHHHHHHhhCCceeeCCCCCCCCCCHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHH
Q psy9637 147 NPAAWPALKPIFQKLNPSFETSAPTPKPQRDKKEFLENIRQALYASK---------------------IVSYAQGFMLMR 205 (490)
Q Consensus 147 ~~~a~~~v~~ll~~l~~~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~---------------------~~~~aE~~~la~ 205 (490)
+.+..+.+..+|+.-+.++...... ....+-|++.|+..... ...+.|+..+++
T Consensus 155 ~~~~~~~l~~~l~~~g~~~~~~~di-----~~~~w~Kl~~N~~~n~l~al~~~~~G~l~~~~~~~~l~~~~~~E~~~va~ 229 (312)
T 3hn2_A 155 DTGRIEELAAMFRQAGVDCRTTDDL-----KRARWEKLVWNIPFNGLCALLQQPVNLILARDVSRKLVRGIMLEVIAGAN 229 (312)
T ss_dssp CSHHHHHHHHHHHHTTCCEEECSCH-----HHHHHHHHHHHHHHHHHHHHHTCCHHHHTTSHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHhCCCCcEEChHH-----HHHHHHHHHHHHhHHHHHHHHCCCHHHHHhChhHHHHHHHHHHHHHHHHH
Confidence 4677788999999887766554433 24577788877754322 233355555555
Q ss_pred HHHHHhC--CCCCHH---HHHHHHhcccchhhHhHhHhHHhhccCcccccccCChhHHHHHHHHHHHHHHHHHHHHHcCC
Q psy9637 206 QAAEIHG--WKLNYG---GIALMWRGGCIIRSVFLGNIKAAFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSALLGI 280 (490)
Q Consensus 206 ~a~~~~~--~Gld~~---~v~~i~~~g~~~~s~~l~~i~~~~~~~~~~~~~~~~~~f~~~l~~~~kDl~~~~~~A~~~gv 280 (490)
+. | ..++.+ .+.++.+..+..+|.+++++... +.. +++. =...+++.|+++|+
T Consensus 230 a~----G~~~~~~~~~~~~~~~~~~~~~~~~sSM~qD~~~g---------r~t------Eid~---i~G~vv~~a~~~gv 287 (312)
T 3hn2_A 230 AQ----GLATFIADGYVDDMLEFTDAMGEYKPSMEIDREEG---------RPL------EIAA---IFRTPLAYGAREGI 287 (312)
T ss_dssp TS----CCSSCCCTTHHHHHHHHHTTSCSCCCHHHHHHHTT---------CCC------CHHH---HTHHHHHHHHHTTC
T ss_pred Hc----CCccCCCHHHHHHHHHHHhcCCCCCchHHHHHHhC---------CCc------cHHH---HhhHHHHHHHHhCC
Confidence 54 3 334322 22222222222223333332110 000 1111 14678999999999
Q ss_pred CchHHHHHHHHHHHHHhC
Q psy9637 281 PTPAFATALAFYDGYRSK 298 (490)
Q Consensus 281 ~~P~~~aa~~~~~~~~~~ 298 (490)
++|+.+..+++++....+
T Consensus 288 ~~P~~~~l~~ll~~~~~~ 305 (312)
T 3hn2_A 288 AMPRVEMLATLLEQATGE 305 (312)
T ss_dssp CCHHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHhc
Confidence 999999999998876544
|
| >2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.67 E-value=1.3e-16 Score=157.40 Aligned_cols=193 Identities=9% Similarity=0.061 Sum_probs=126.0
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeE-EEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchH
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTV-VAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAV 82 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V-~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v 82 (490)
+|||||||+|.||..|+..|.++ ++| .+|||++++.+.+.+... . .+.+++++++. +|+||+|||+. .+
T Consensus 2 ~m~I~iIG~G~mG~~la~~l~~~-~~v~~v~~~~~~~~~~~~~~~g----~-~~~~~~~~~~~---~DvVilav~~~-~~ 71 (276)
T 2i76_A 2 SLVLNFVGTGTLTRFFLECLKDR-YEIGYILSRSIDRARNLAEVYG----G-KAATLEKHPEL---NGVVFVIVPDR-YI 71 (276)
T ss_dssp --CCEEESCCHHHHHHHHTTC-----CCCEECSSHHHHHHHHHHTC----C-CCCSSCCCCC------CEEECSCTT-TH
T ss_pred CceEEEEeCCHHHHHHHHHHHHc-CcEEEEEeCCHHHHHHHHHHcC----C-ccCCHHHHHhc---CCEEEEeCChH-HH
Confidence 46999999999999999999998 999 599999999888865421 1 35566665554 89999999996 67
Q ss_pred HHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCCCccccc--cCCccCCCCCcchHHHHHHHHHh
Q psy9637 83 DDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGGEDGAR--YGPSLMPGGNPAAWPALKPIFQK 160 (490)
Q Consensus 83 ~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg~~~a~--~G~~im~GG~~~a~~~v~~ll~~ 160 (490)
.+++.++. .++.+||+++++.+.+..+.. ..+..+..++++|++.... .+..++++++++.++.++++|+.
T Consensus 72 ~~v~~~l~---~~~~ivi~~s~~~~~~~l~~~----~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 144 (276)
T 2i76_A 72 KTVANHLN---LGDAVLVHCSGFLSSEIFKKS----GRASIHPNFSFSSLEKALEMKDQIVFGLEGDERGLPIVKKIAEE 144 (276)
T ss_dssp HHHHTTTC---CSSCCEEECCSSSCGGGGCSS----SEEEEEECSCC--CTTGGGCGGGCCEEECCCTTTHHHHHHHHHH
T ss_pred HHHHHHhc---cCCCEEEECCCCCcHHHHHHh----hccccchhhhcCCCchhHHHhCCCeEEEEeChHHHHHHHHHHHH
Confidence 88887765 678999999987665433211 1122233456777665444 33467778888899999999999
Q ss_pred hCCceeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHH--HHHHHHh
Q psy9637 161 LNPSFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYG--GIALMWR 225 (490)
Q Consensus 161 l~~~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~~--~v~~i~~ 225 (490)
+|.+++++++.. ........++..|.+. ..+.|+..++.+. |++.+ .+.+++.
T Consensus 145 lG~~~~~v~~~~--~~~~~~~~~l~~n~~~----~~~~~a~~~~~~~------Gl~~~~a~~~~l~~ 199 (276)
T 2i76_A 145 ISGKYFVIPSEK--KKAYHLAAVIASNFPV----ALAYLSKRIYTLL------GLDEPELLIHTLMK 199 (276)
T ss_dssp HCSCEEECCGGG--HHHHHHHHHHHHTTHH----HHHHHHHHHHHTT------TCSCHHHHHHHHHH
T ss_pred hCCCEEEECHHH--HHHHHHHHHHHHHHHH----HHHHHHHHHHHHc------CCChHHHHHHHHHH
Confidence 998888877531 0000122345555332 3566777777777 89887 5555543
|
| >1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=2.2e-16 Score=148.98 Aligned_cols=177 Identities=12% Similarity=0.146 Sum_probs=134.9
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHc-ccC--CCCeeccCCHHHHHhhCCCCcEEEEecCCCc
Q psy9637 5 GDIGLIG-LAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLAN-EAK--GTNIIGAHSLEELVKNLKKPRRVMMLVKAGS 80 (490)
Q Consensus 5 ~~IgiIG-lG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~-g~~--~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~ 80 (490)
|||+||| +|.||..++..|+++|++|+++||++++.+.+.+. +.. ...+. .+++.++++. +|+||+++|+ .
T Consensus 1 m~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---~D~Vi~~~~~-~ 75 (212)
T 1jay_A 1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIAGDASIT-GMKNEDAAEA---CDIAVLTIPW-E 75 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHHHHSSCCEE-EEEHHHHHHH---CSEEEECSCH-H
T ss_pred CeEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccccccCCCC-hhhHHHHHhc---CCEEEEeCCh-h
Confidence 4899999 99999999999999999999999999988877653 200 01133 3577777776 8999999997 4
Q ss_pred hHHHHHHhhcccCCCCCEEEcCCCCChH------------HHHHHHHHHHHcccccccc--CCCCCcccc--ccCC-ccC
Q psy9637 81 AVDDFIDKLVPLLEKGDIIIDGGNSEYQ------------DTDRRSKALEAKGLLYVGC--GVSGGEDGA--RYGP-SLM 143 (490)
Q Consensus 81 ~v~~vl~~l~~~l~~g~iiId~s~~~~~------------~~~~~~~~l~~~gi~~ld~--~vsGg~~~a--~~G~-~im 143 (490)
.++++++++.+.+ ++.+|||++|.... ...+..+.+. +.+++++ |+.+..... ..+. .++
T Consensus 76 ~~~~~~~~l~~~~-~~~~vi~~~~g~~~~~~~~~~~~g~~~~~~l~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 152 (212)
T 1jay_A 76 HAIDTARDLKNIL-REKIVVSPLVPVSRGAKGFTYSSERSAAEIVAEVLE--SEKVVSALHTIPAARFANLDEKFDWDVP 152 (212)
T ss_dssp HHHHHHHHTHHHH-TTSEEEECCCCEECCTTCCEECCSSCHHHHHHHHHT--CSCEEECCTTCCHHHHHCTTCCCCEEEE
T ss_pred hHHHHHHHHHHHc-CCCEEEEcCCCcCcCCceeecCCCCcHHHHHHHhCC--CCeEEEEccchHHHHhhCcCCCCCccEE
Confidence 7888888887777 58999999985542 1344444443 4678887 666555443 4555 677
Q ss_pred CCCC-cchHHHHHHHHHhh-CCceeeCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q psy9637 144 PGGN-PAAWPALKPIFQKL-NPSFETSAPTPKPQRDKKEFLENIRQALYASKI 194 (490)
Q Consensus 144 ~GG~-~~a~~~v~~ll~~l-~~~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~ 194 (490)
++|+ ++.+++++++|+.+ +..++++++.+ .+.++|.+.|++.....
T Consensus 153 ~~g~~~~~~~~v~~l~~~~~G~~~~~~~~~~-----~a~~~k~~~~~~~~~~~ 200 (212)
T 1jay_A 153 VCGDDDESKKVVMSLISEIDGLRPLDAGPLS-----NSRLVESLTPLILNIMR 200 (212)
T ss_dssp EEESCHHHHHHHHHHHHHSTTEEEEEEESGG-----GHHHHHTHHHHHHHHHH
T ss_pred EECCcHHHHHHHHHHHHHcCCCCceeccchh-----HHHHhcchHHHHHHHHH
Confidence 7776 78999999999999 98888888754 67899999998877554
|
| >3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.6e-15 Score=152.73 Aligned_cols=256 Identities=13% Similarity=0.048 Sum_probs=157.6
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccC-----CC-----CeeccCCHHHHHhhCCCCcEEEE
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAK-----GT-----NIIGAHSLEELVKNLKKPRRVMM 74 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~-----~~-----~i~~~~s~~e~v~~l~~~dvIil 74 (490)
|||+|||+|.||..+|..|+++|++|++|+|++ .+.+.+.|.. .. ++..+++++++.+ .+|+||+
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~--~~~i~~~Gl~~~~~~~g~~~~~~~~~~~~~~~~~~---~~DlVil 77 (320)
T 3i83_A 3 LNILVIGTGAIGSFYGALLAKTGHCVSVVSRSD--YETVKAKGIRIRSATLGDYTFRPAAVVRSAAELET---KPDCTLL 77 (320)
T ss_dssp CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTT--HHHHHHHCEEEEETTTCCEEECCSCEESCGGGCSS---CCSEEEE
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCh--HHHHHhCCcEEeecCCCcEEEeeeeeECCHHHcCC---CCCEEEE
Confidence 699999999999999999999999999999986 3666655421 01 1223456666543 3899999
Q ss_pred ecCCCchHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCCC------ccccccCC-ccCC---
Q psy9637 75 LVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGG------EDGARYGP-SLMP--- 144 (490)
Q Consensus 75 ~vp~~~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg------~~~a~~G~-~im~--- 144 (490)
+||.. +++++++.+.+.+.++.+||...|+.... ....+.+... .++.+++.-| ..-...++ .+.+
T Consensus 78 avK~~-~~~~~l~~l~~~l~~~t~Iv~~~nGi~~~-~~l~~~~~~~--~vl~g~~~~~a~~~~pg~v~~~~~~~~~ig~~ 153 (320)
T 3i83_A 78 CIKVV-EGADRVGLLRDAVAPDTGIVLISNGIDIE-PEVAAAFPDN--EVISGLAFIGVTRTAPGEIWHQAYGRLMLGNY 153 (320)
T ss_dssp CCCCC-TTCCHHHHHTTSCCTTCEEEEECSSSSCS-HHHHHHSTTS--CEEEEEEEEEEEEEETTEEEEEEEEEEEEEES
T ss_pred ecCCC-ChHHHHHHHHhhcCCCCEEEEeCCCCChH-HHHHHHCCCC--cEEEEEEEeceEEcCCCEEEECCCCEEEEecC
Confidence 99995 78899999999999999999999876422 2222222221 2333333221 11112233 3333
Q ss_pred -CCCcchHHHHHHHHHhhCCceeeCCCCCCCCCCHHHHHHHHHHHHHH--------------------HHHHHHHHHHHH
Q psy9637 145 -GGNPAAWPALKPIFQKLNPSFETSAPTPKPQRDKKEFLENIRQALYA--------------------SKIVSYAQGFML 203 (490)
Q Consensus 145 -GG~~~a~~~v~~ll~~l~~~~~~~g~~g~~~g~~a~~~Kll~n~l~~--------------------~~~~~~aE~~~l 203 (490)
+.+.+..+.+..+|+.-+.++....+. ....+.|++.|+... .....+.|+..+
T Consensus 154 ~~~~~~~~~~l~~~l~~~~~~~~~~~di-----~~~~w~Kl~~N~~~N~ltal~~~~~g~~~~~~~~~l~~~~~~E~~~v 228 (320)
T 3i83_A 154 PGGVSERVKTLAAAFEEAGIDGIATENI-----TTARWQKCVWNAAFNPLSVLSGGLDTLDILSTQEGFVRAIMQEIRAV 228 (320)
T ss_dssp SSCCCHHHHHHHHHHHHTTSCEEECSCH-----HHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHCHHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHhCCCCceECHHH-----HHHHHHHHHHHHhhhHHHHHHCCCHHHHHhCcHHHHHHHHHHHHHHH
Confidence 455677888999999887776654443 245677887775321 233455666666
Q ss_pred HHHHHHHhCCCCCHH---HHHHHHhcccchhhHhHhHhHHhhccCcccccccCChhHHHHHHHHHHHHHHHHHHHHHcCC
Q psy9637 204 MRQAAEIHGWKLNYG---GIALMWRGGCIIRSVFLGNIKAAFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSALLGI 280 (490)
Q Consensus 204 a~~a~~~~~~Gld~~---~v~~i~~~g~~~~s~~l~~i~~~~~~~~~~~~~~~~~~f~~~l~~~~kDl~~~~~~A~~~gv 280 (490)
+++. |..++.+ .+.++.+..+..++.+++++... +.. +++. =...+++.|+++|+
T Consensus 229 a~a~----G~~l~~~~~~~~~~~~~~~~~~~sSM~qD~~~g---------r~t------Eid~---i~G~vv~~a~~~gv 286 (320)
T 3i83_A 229 AAAN----GHPLPEDIVEKNVASTYKMPPYKTSMLVDFEAG---------QPM------ETEV---ILGNAVRAGRRTRV 286 (320)
T ss_dssp HHHT----TCCCCTTHHHHHHHHHHHSCCCCCHHHHHHHHT---------CCC------CHHH---HTHHHHHHHHHTTC
T ss_pred HHHc----CCCCChHHHHHHHHHHhcCCCCCCcHHHHHHhC---------CCc------hHHH---HccHHHHHHHHhCC
Confidence 6665 3333322 22222221111222233222110 000 1111 14568999999999
Q ss_pred CchHHHHHHHHHHHHH
Q psy9637 281 PTPAFATALAFYDGYR 296 (490)
Q Consensus 281 ~~P~~~aa~~~~~~~~ 296 (490)
++|+.+..++.++...
T Consensus 287 ~~P~~~~l~~~l~~~e 302 (320)
T 3i83_A 287 AIPHLESVYALMKLLE 302 (320)
T ss_dssp CCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999887654
|
| >2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.5e-17 Score=156.62 Aligned_cols=150 Identities=21% Similarity=0.245 Sum_probs=111.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
.|+|+|||+|.||..||.+|.++|++|++|||+++ .+.+...+. ... ++.++++. +|+||++||+. .++
T Consensus 19 ~~~I~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~-~~~~~~~g~-----~~~-~~~~~~~~---aDvVilav~~~-~~~ 87 (201)
T 2yjz_A 19 QGVVCIFGTGDFGKSLGLKMLQCGYSVVFGSRNPQ-VSSLLPRGA-----EVL-CYSEAASR---SDVIVLAVHRE-HYD 87 (201)
Confidence 36899999999999999999999999999999987 555543332 233 66676665 89999999985 788
Q ss_pred HHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCCCcc----------ccccCC------ccCCCCC
Q psy9637 84 DFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGGED----------GARYGP------SLMPGGN 147 (490)
Q Consensus 84 ~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg~~----------~a~~G~------~im~GG~ 147 (490)
+++ ++.+ +.++++|||++|+.+... +...+..+++.++.++.. .+..|. .+|+|++
T Consensus 88 ~v~-~l~~-~~~~~ivI~~~~G~~~~~------~~~~~~~~l~~~~~~~~vvra~~n~~a~~~~~g~l~g~~~~~~~g~~ 159 (201)
T 2yjz_A 88 FLA-ELAD-SLKGRVLIDVSNNQKMNQ------YPESNAEYLAQLVPGAHVVKAFNTISAWALQSGTLDASRQVFVCGND 159 (201)
Confidence 777 4544 347899999999886432 222344455555444322 222232 6788989
Q ss_pred cchHHHHHHHHHhhCCceeeCCCCC
Q psy9637 148 PAAWPALKPIFQKLNPSFETSAPTP 172 (490)
Q Consensus 148 ~~a~~~v~~ll~~l~~~~~~~g~~g 172 (490)
++++++++++|+.+|.+++++|+.+
T Consensus 160 ~~~~~~v~~ll~~~G~~~~~~G~l~ 184 (201)
T 2yjz_A 160 SKAKDRVMDIARTLGLTPLDQGSLV 184 (201)
Confidence 9999999999999999999999875
|
| >4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.61 E-value=7.5e-16 Score=146.85 Aligned_cols=157 Identities=15% Similarity=0.170 Sum_probs=115.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeEEE-EeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchH
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVA-YNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAV 82 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V~v-~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v 82 (490)
||||+|||+|.||..+|..|+++|++|++ |||++++++.+.+.... ....+..+.++. +|+||++||. ..+
T Consensus 23 mmkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~~~~~~~l~~~~g~----~~~~~~~~~~~~---aDvVilavp~-~~~ 94 (220)
T 4huj_A 23 MTTYAIIGAGAIGSALAERFTAAQIPAIIANSRGPASLSSVTDRFGA----SVKAVELKDALQ---ADVVILAVPY-DSI 94 (220)
T ss_dssp SCCEEEEECHHHHHHHHHHHHHTTCCEEEECTTCGGGGHHHHHHHTT----TEEECCHHHHTT---SSEEEEESCG-GGH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCCHHHHHHHHHHhCC----CcccChHHHHhc---CCEEEEeCCh-HHH
Confidence 57999999999999999999999999999 99999999887654221 123344455555 8999999997 589
Q ss_pred HHHHHhhcccCCCCCEEEcCCCCCh------H------HHHHHHHHHHH----ccccccccCCCC-CccccccCC--ccC
Q psy9637 83 DDFIDKLVPLLEKGDIIIDGGNSEY------Q------DTDRRSKALEA----KGLLYVGCGVSG-GEDGARYGP--SLM 143 (490)
Q Consensus 83 ~~vl~~l~~~l~~g~iiId~s~~~~------~------~~~~~~~~l~~----~gi~~ld~~vsG-g~~~a~~G~--~im 143 (490)
.+++.++.+ + ++++|||+++..+ . ..+.+.+.+.. ++..++.+++.. ++. ...++ .++
T Consensus 95 ~~v~~~l~~-~-~~~ivi~~~~g~~~~~~~~~~~~~~~~~~~l~~~l~~~~vv~~~~~~~~~v~~~g~~-~~~~~~~v~~ 171 (220)
T 4huj_A 95 ADIVTQVSD-W-GGQIVVDASNAIDFPAFKPRDLGGRLSTEIVSELVPGAKVVKAFNTLPAAVLAADPD-KGTGSRVLFL 171 (220)
T ss_dssp HHHHTTCSC-C-TTCEEEECCCCBCTTTCCBCCCTTCCHHHHHHHHSTTCEEEEESCSSCHHHHTSCSB-CSSCEEEEEE
T ss_pred HHHHHHhhc-c-CCCEEEEcCCCCCcccccccccCCCcHHHHHHHHCCCCCEEECCCCCCHHHhhhCcc-cCCCCeeEEE
Confidence 999988877 5 6899999998763 1 33333344332 133455566555 443 23334 444
Q ss_pred CCCCcchHHHHHHHHHhhCCceeeCCCC
Q psy9637 144 PGGNPAAWPALKPIFQKLNPSFETSAPT 171 (490)
Q Consensus 144 ~GG~~~a~~~v~~ll~~l~~~~~~~g~~ 171 (490)
.|.++++.++++++|+.++..++++|+.
T Consensus 172 ~g~~~~~~~~v~~l~~~~G~~~~~~G~l 199 (220)
T 4huj_A 172 SGNHSDANRQVAELISSLGFAPVDLGTL 199 (220)
T ss_dssp EESCHHHHHHHHHHHHHTTCEEEECCSH
T ss_pred eCCCHHHHHHHHHHHHHhCCCeEeeCCh
Confidence 5567789999999999999999998885
|
| >2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.61 E-value=1.4e-14 Score=144.39 Aligned_cols=154 Identities=14% Similarity=0.174 Sum_probs=117.6
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 5 GDIGLIG-LAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 5 ~~IgiIG-lG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
++|+||| +|.||..+|..|.++|++|++|||+++. ++.+++.. +|+||+|||.. .+.
T Consensus 22 ~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~~~------------------~~~~~~~~---aDvVilavp~~-~~~ 79 (298)
T 2pv7_A 22 HKIVIVGGYGKLGGLFARYLRASGYPISILDREDWA------------------VAESILAN---ADVVIVSVPIN-LTL 79 (298)
T ss_dssp CCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGG------------------GHHHHHTT---CSEEEECSCGG-GHH
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCccc------------------CHHHHhcC---CCEEEEeCCHH-HHH
Confidence 5899999 9999999999999999999999998641 44556655 89999999995 799
Q ss_pred HHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccccccc-CCCCCccccccCC-ccCC-CCCcchHHHHHHHHHh
Q psy9637 84 DFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGC-GVSGGEDGARYGP-SLMP-GGNPAAWPALKPIFQK 160 (490)
Q Consensus 84 ~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~-~vsGg~~~a~~G~-~im~-GG~~~a~~~v~~ll~~ 160 (490)
++++++.+.++++.+|+|.+++.........+. .+.+|+.. |++|++.....|. .+++ +.+++.++.++++|+.
T Consensus 80 ~vl~~l~~~l~~~~iv~~~~svk~~~~~~~~~~---~~~~~v~~hP~~g~~~~~~~g~~~~l~~~~~~~~~~~v~~l~~~ 156 (298)
T 2pv7_A 80 ETIERLKPYLTENMLLADLTSVKREPLAKMLEV---HTGAVLGLHPMFGADIASMAKQVVVRCDGRFPERYEWLLEQIQI 156 (298)
T ss_dssp HHHHHHGGGCCTTSEEEECCSCCHHHHHHHHHH---CSSEEEEEEECSCTTCSCCTTCEEEEEEEECGGGTHHHHHHHHH
T ss_pred HHHHHHHhhcCCCcEEEECCCCCcHHHHHHHHh---cCCCEEeeCCCCCCCchhhcCCeEEEecCCCHHHHHHHHHHHHH
Confidence 999999999999999999988765443333222 24577765 8888776666676 4444 3367889999999999
Q ss_pred hCCceeeCCCCCCCCCCHHHHHHHHHHH
Q psy9637 161 LNPSFETSAPTPKPQRDKKEFLENIRQA 188 (490)
Q Consensus 161 l~~~~~~~g~~g~~~g~~a~~~Kll~n~ 188 (490)
++..++.+++.. ...+++++.+.
T Consensus 157 ~G~~~~~~~~~~-----~d~~~a~~~~~ 179 (298)
T 2pv7_A 157 WGAKIYQTNATE-----HDHNMTYIQAL 179 (298)
T ss_dssp TTCEEEECCHHH-----HHHHHHHHTHH
T ss_pred cCCEEEECCHHH-----HHHHHHHHHHH
Confidence 999887766531 23455555544
|
| >2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.1e-15 Score=144.54 Aligned_cols=153 Identities=16% Similarity=0.175 Sum_probs=112.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
+|+|+|||+|.||..+|..|+++|++|++|||+++ .++.+|+||+++|+ ..++
T Consensus 19 ~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~--------------------------~~~~aD~vi~av~~-~~~~ 71 (209)
T 2raf_A 19 GMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ--------------------------ATTLGEIVIMAVPY-PALA 71 (209)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC--------------------------CSSCCSEEEECSCH-HHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH--------------------------HhccCCEEEEcCCc-HHHH
Confidence 47899999999999999999999999999999854 12348999999995 6889
Q ss_pred HHHHhhcccCCCCCEEEcCCCCCh-HH------------HHHHHHHHHHccccccc------cCCCCCccccccCC-ccC
Q psy9637 84 DFIDKLVPLLEKGDIIIDGGNSEY-QD------------TDRRSKALEAKGLLYVG------CGVSGGEDGARYGP-SLM 143 (490)
Q Consensus 84 ~vl~~l~~~l~~g~iiId~s~~~~-~~------------~~~~~~~l~~~gi~~ld------~~vsGg~~~a~~G~-~im 143 (490)
++++++.+.++ +.+||+++|..+ .+ .+...+.+. +.++++ +|..+.+..+..++ .++
T Consensus 72 ~v~~~l~~~~~-~~~vi~~~~g~~~~~~~~l~~~~~~~~~~~l~~~l~--~~~vv~~~~~~~~p~~~~~~~~g~~~~~~~ 148 (209)
T 2raf_A 72 ALAKQYATQLK-GKIVVDITNPLNFDTWDDLVVPADSSAAQELQQQLP--DSQVLKAFNTTFAATLQSGQVNGKEPTTVL 148 (209)
T ss_dssp HHHHHTHHHHT-TSEEEECCCCBCTTTSSSBSSCTTCCHHHHHHHHCT--TSEEEECSTTSCHHHHHHSEETTTEECEEE
T ss_pred HHHHHHHHhcC-CCEEEEECCCCCccccccccCCCCCcHHHHHHHHCC--CCcEEEeeecccHhhccccccCCCCCceeE
Confidence 99999888887 999999999654 11 233323322 445555 44443332221123 556
Q ss_pred CCCC-cchHHHHHHHHHhhCCceeeCCCCCCCCCCHHHHHHHHHHHHHH
Q psy9637 144 PGGN-PAAWPALKPIFQKLNPSFETSAPTPKPQRDKKEFLENIRQALYA 191 (490)
Q Consensus 144 ~GG~-~~a~~~v~~ll~~l~~~~~~~g~~g~~~g~~a~~~Kll~n~l~~ 191 (490)
++|+ ++..+.++++|+.++.+++++++.+ .+.++|++.|++..
T Consensus 149 ~~g~~~~~~~~v~~ll~~~G~~~~~~~~i~-----~a~~~K~i~~l~~~ 192 (209)
T 2raf_A 149 VAGNDDSAKQRFTRALADSPLEVKDAGKLK-----RARELEAMGFMQMT 192 (209)
T ss_dssp EEESCHHHHHHHHHHTTTSSCEEEEEESGG-----GHHHHHHHHHHHHH
T ss_pred EcCCCHHHHHHHHHHHHHcCCceEeCCCHh-----HHHHhcchHHHHHH
Confidence 6665 4889999999999998888888764 67889988777643
|
| >2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=2.5e-15 Score=142.76 Aligned_cols=157 Identities=20% Similarity=0.236 Sum_probs=110.0
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
+|+|+|||+|.||..++.+|.++|++|++|||++++.+.+.+.+. ... ++.++++. +|+||+++|. ..++
T Consensus 28 ~~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~~~~~~~~~~~g~-----~~~-~~~~~~~~---~DvVi~av~~-~~~~ 97 (215)
T 2vns_A 28 APKVGILGSGDFARSLATRLVGSGFKVVVGSRNPKRTARLFPSAA-----QVT-FQEEAVSS---PEVIFVAVFR-EHYS 97 (215)
T ss_dssp -CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSHHHHHHHSBTTS-----EEE-EHHHHTTS---CSEEEECSCG-GGSG
T ss_pred CCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCC-----cee-cHHHHHhC---CCEEEECCCh-HHHH
Confidence 478999999999999999999999999999999998887755432 233 67676655 9999999997 4666
Q ss_pred HHHHhhcccCCCCCEEEcCCCCChHHHHH----HHHHHHHc--cccccc--cCCCCC--ccccccCC--ccCCCCCcchH
Q psy9637 84 DFIDKLVPLLEKGDIIIDGGNSEYQDTDR----RSKALEAK--GLLYVG--CGVSGG--EDGARYGP--SLMPGGNPAAW 151 (490)
Q Consensus 84 ~vl~~l~~~l~~g~iiId~s~~~~~~~~~----~~~~l~~~--gi~~ld--~~vsGg--~~~a~~G~--~im~GG~~~a~ 151 (490)
++++ +.+.+ ++.+|||++++.+..+.+ ..+.+.+. +.+++. .++++. ..+...|. .++.|++++.+
T Consensus 98 ~v~~-l~~~~-~~~~vv~~s~g~~~~~l~~~~~~~~~l~~~l~~~~vv~~~n~~~~~~~~~~~~~g~~~~~~~g~~~~~~ 175 (215)
T 2vns_A 98 SLCS-LSDQL-AGKILVDVSNPTEQEHLQHRESNAEYLASLFPTCTVVKAFNVISAWTLQAGPRDGNRQVPICGDQPEAK 175 (215)
T ss_dssp GGGG-GHHHH-TTCEEEECCCCCHHHHHHCSSCHHHHHHHHCTTSEEEEECTTBCHHHHHTCSCSSCCEEEEEESCHHHH
T ss_pred HHHH-HHHhc-CCCEEEEeCCCcccccccccccHHHHHHHHCCCCeEEeccccccHhHhcccccCCceeEEEecCCHHHH
Confidence 6664 55556 799999999988655421 01111110 111111 111110 01222333 56778899999
Q ss_pred HHHHHHHHhhCCceeeCCCCC
Q psy9637 152 PALKPIFQKLNPSFETSAPTP 172 (490)
Q Consensus 152 ~~v~~ll~~l~~~~~~~g~~g 172 (490)
+.++++|+.+|..++++|+.+
T Consensus 176 ~~v~~ll~~~G~~~~~~g~~~ 196 (215)
T 2vns_A 176 RAVSEMALAMGFMPVDMGSLA 196 (215)
T ss_dssp HHHHHHHHHTTCEEEECCSGG
T ss_pred HHHHHHHHHcCCceEeecchh
Confidence 999999999999999999875
|
| >1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=1.7e-14 Score=159.78 Aligned_cols=189 Identities=13% Similarity=0.110 Sum_probs=134.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHH-----------HcccC--------CCCeeccCCHHHHHh
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFL-----------ANEAK--------GTNIIGAHSLEELVK 64 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~-----------~~g~~--------~~~i~~~~s~~e~v~ 64 (490)
.++|+|||+|.||.+||.+|+++||+|++||+++++++... +.|.. ..+++.++++ +.++
T Consensus 314 i~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~-~~~~ 392 (715)
T 1wdk_A 314 VKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSY-GDFG 392 (715)
T ss_dssp CSSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSS-TTGG
T ss_pred CCEEEEECCChhhHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCeEEECCH-HHHC
Confidence 46899999999999999999999999999999999887632 22210 0124556676 4455
Q ss_pred hCCCCcEEEEecCCCchHH-HHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHH----HccccccccCCCCCccccccC
Q psy9637 65 NLKKPRRVMMLVKAGSAVD-DFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALE----AKGLLYVGCGVSGGEDGARYG 139 (490)
Q Consensus 65 ~l~~~dvIil~vp~~~~v~-~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~----~~gi~~ld~~vsGg~~~a~~G 139 (490)
+ +|+||+|||.+..++ .++.++.+.++++.+|++.+++.+.+. +.+.+. -.|.||++ |+..++ .
T Consensus 393 ~---aDlVIeaV~e~~~vk~~v~~~l~~~~~~~~IlasntStl~i~~--la~~~~~~~~~ig~hf~~-P~~~~~-----l 461 (715)
T 1wdk_A 393 N---VDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTISISL--LAKALKRPENFVGMHFFN-PVHMMP-----L 461 (715)
T ss_dssp G---CSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHHH--HGGGCSCGGGEEEEECCS-STTTCC-----E
T ss_pred C---CCEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeCCCCCCHHH--HHHHhcCccceEEEEccC-CcccCc-----e
Confidence 5 899999999986665 566888888999999987666655432 222221 13778876 443221 0
Q ss_pred CccCCCC--CcchHHHHHHHHHhhCCceeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCH
Q psy9637 140 PSLMPGG--NPAAWPALKPIFQKLNPSFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNY 217 (490)
Q Consensus 140 ~~im~GG--~~~a~~~v~~ll~~l~~~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~ 217 (490)
..++.|. ++++++.+.++++.++..++++++.. | . ++|+++. ..++|++.++++ |+|+
T Consensus 462 vevv~g~~t~~e~~~~~~~l~~~lGk~~v~v~d~~---G---f---i~Nril~----~~~~Ea~~l~~~-------G~~~ 521 (715)
T 1wdk_A 462 VEVIRGEKSSDLAVATTVAYAKKMGKNPIVVNDCP---G---F---LVNRVLF----PYFGGFAKLVSA-------GVDF 521 (715)
T ss_dssp EEEEECSSCCHHHHHHHHHHHHHTTCEEEEEESCT---T---T---THHHHHH----HHHHHHHHHHHT-------TCCH
T ss_pred EEEEECCCCCHHHHHHHHHHHHHhCCEeEEEcCCC---C---h---hhhHHHH----HHHHHHHHHHHC-------CCCH
Confidence 1345554 78999999999999999888877641 2 1 3444443 457899888873 8999
Q ss_pred HHHHHHH
Q psy9637 218 GGIALMW 224 (490)
Q Consensus 218 ~~v~~i~ 224 (490)
+++-+++
T Consensus 522 ~~id~~~ 528 (715)
T 1wdk_A 522 VRIDKVM 528 (715)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999887
|
| >2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.7e-14 Score=158.41 Aligned_cols=189 Identities=8% Similarity=0.050 Sum_probs=134.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH-----------ccc--------CCCCeeccCCHHHHHh
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLA-----------NEA--------KGTNIIGAHSLEELVK 64 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~-----------~g~--------~~~~i~~~~s~~e~v~ 64 (490)
+++|+|||+|.||.+||.+|+++||+|++||+++++++...+ .|. ...+++.+++++ .++
T Consensus 312 ~~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~~-~~~ 390 (725)
T 2wtb_A 312 IKKVAIIGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGSLDYE-SFR 390 (725)
T ss_dssp CCCEEEECCSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHHHHHTTC----CTTHHHHTTTSEEEESSSG-GGT
T ss_pred CcEEEEEcCCHhhHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcceEEeCCHH-HHC
Confidence 468999999999999999999999999999999998876432 111 012455667773 344
Q ss_pred hCCCCcEEEEecCCCchHH-HHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHH----HccccccccCCCCCccccccC
Q psy9637 65 NLKKPRRVMMLVKAGSAVD-DFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALE----AKGLLYVGCGVSGGEDGARYG 139 (490)
Q Consensus 65 ~l~~~dvIil~vp~~~~v~-~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~----~~gi~~ld~~vsGg~~~a~~G 139 (490)
+ +|+||+|||....++ .++.++.+.++++.+|++.+++.+.+. +.+.+. -.|.||++ |+...+-
T Consensus 391 ~---aDlVIeaVpe~~~vk~~v~~~l~~~~~~~~IlasntStl~i~~--la~~~~~p~~~iG~hf~~-P~~~~~l----- 459 (725)
T 2wtb_A 391 D---VDMVIEAVIENISLKQQIFADLEKYCPQHCILASNTSTIDLNK--IGERTKSQDRIVGAHFFS-PAHIMPL----- 459 (725)
T ss_dssp T---CSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHH--HTTTCSCTTTEEEEEECS-STTTCCE-----
T ss_pred C---CCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHHH--HHHHhcCCCCEEEecCCC-CcccCce-----
Confidence 4 999999999986654 566888888999999987666655432 222221 14778877 4432210
Q ss_pred CccCCCC--CcchHHHHHHHHHhhCCceeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCH
Q psy9637 140 PSLMPGG--NPAAWPALKPIFQKLNPSFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNY 217 (490)
Q Consensus 140 ~~im~GG--~~~a~~~v~~ll~~l~~~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~ 217 (490)
..++.|. ++++++++.++++.++..++++++.. | . ++|+++. ..++|++.++++ |+|+
T Consensus 460 vevv~g~~t~~e~~~~~~~l~~~lGk~~v~v~d~~---G---f---i~Nril~----~~~~Ea~~l~~~-------G~~~ 519 (725)
T 2wtb_A 460 LEIVRTNHTSAQVIVDLLDVGKKIKKTPVVVGNCT---G---F---AVNRMFF----PYTQAAMFLVEC-------GADP 519 (725)
T ss_dssp EEEEECSSCCHHHHHHHHHHHHHTTCEEEEEESST---T---T---THHHHHH----HHHHHHHHHHHT-------TCCH
T ss_pred EEEEECCCCCHHHHHHHHHHHHHhCCEEEEECCCc---c---H---HHHHHHH----HHHHHHHHHHHC-------CCCH
Confidence 1344443 78999999999999999888877641 2 1 3444443 358899888864 8999
Q ss_pred HHHHHHH
Q psy9637 218 GGIALMW 224 (490)
Q Consensus 218 ~~v~~i~ 224 (490)
+++-+++
T Consensus 520 e~id~~~ 526 (725)
T 2wtb_A 520 YLIDRAI 526 (725)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999988
|
| >3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.53 E-value=6e-14 Score=134.15 Aligned_cols=129 Identities=13% Similarity=0.208 Sum_probs=103.3
Q ss_pred CCCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchH
Q psy9637 3 AKGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAV 82 (490)
Q Consensus 3 ~~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v 82 (490)
..|||+|||+|.||.+||++|.++||+|++||+. ++ +.. +| |+|||+. .+
T Consensus 5 ~~mkI~IIG~G~~G~sLA~~L~~~G~~V~~~~~~-----------------------~~-~~~---aD--ilavP~~-ai 54 (232)
T 3dfu_A 5 PRLRVGIFDDGSSTVNMAEKLDSVGHYVTVLHAP-----------------------ED-IRD---FE--LVVIDAH-GV 54 (232)
T ss_dssp CCCEEEEECCSCCCSCHHHHHHHTTCEEEECSSG-----------------------GG-GGG---CS--EEEECSS-CH
T ss_pred CCcEEEEEeeCHHHHHHHHHHHHCCCEEEEecCH-----------------------HH-hcc---CC--EEEEcHH-HH
Confidence 3579999999999999999999999999999983 11 233 78 8999996 89
Q ss_pred HHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccc-cCCCCCccccccCCccCCCCCcchHHHHHHHHHhh
Q psy9637 83 DDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVG-CGVSGGEDGARYGPSLMPGGNPAAWPALKPIFQKL 161 (490)
Q Consensus 83 ~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld-~~vsGg~~~a~~G~~im~GG~~~a~~~v~~ll~~l 161 (490)
.+++.++.+.+++|.+|+|++.+...... +.+...|..|+. -|+.|.++.. .++++++++.++++++.+
T Consensus 55 ~~vl~~l~~~l~~g~ivvd~sgs~~~~vl---~~~~~~g~~fvg~HPm~g~~~~i-------~a~d~~a~~~l~~L~~~l 124 (232)
T 3dfu_A 55 EGYVEKLSAFARRGQMFLHTSLTHGITVM---DPLETSGGIVMSAHPIGQDRWVA-------SALDELGETIVGLLVGEL 124 (232)
T ss_dssp HHHHHHHHTTCCTTCEEEECCSSCCGGGG---HHHHHTTCEEEEEEEEETTEEEE-------EESSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCCCEEEEECCcCHHHHH---HHHHhCCCcEEEeeeCCCCceee-------eCCCHHHHHHHHHHHHHh
Confidence 99999999999999999998766544332 334467888885 5887654332 334778999999999999
Q ss_pred CCceeeCCCC
Q psy9637 162 NPSFETSAPT 171 (490)
Q Consensus 162 ~~~~~~~g~~ 171 (490)
|.+++.+++.
T Consensus 125 G~~vv~~~~~ 134 (232)
T 3dfu_A 125 GGSIVEIADD 134 (232)
T ss_dssp TCEECCCCGG
T ss_pred CCEEEEeCHH
Confidence 9999887764
|
| >1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.6e-13 Score=144.85 Aligned_cols=190 Identities=14% Similarity=0.186 Sum_probs=129.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH-----------cccC------CCCeeccCCHHHHHhhC
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLA-----------NEAK------GTNIIGAHSLEELVKNL 66 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~-----------~g~~------~~~i~~~~s~~e~v~~l 66 (490)
+++|+|||+|.||..||.+|+++||+|++||+++++++...+ .+.. ......+++++ .++
T Consensus 37 ~~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~-~~~-- 113 (463)
T 1zcj_A 37 VSSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSSTK-ELS-- 113 (463)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEESCGG-GGT--
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhcCCHH-HHC--
Confidence 468999999999999999999999999999999988776543 1110 01122355663 344
Q ss_pred CCCcEEEEecCCCchH-HHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHH----ccccccccCCCCCccccccCCc
Q psy9637 67 KKPRRVMMLVKAGSAV-DDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEA----KGLLYVGCGVSGGEDGARYGPS 141 (490)
Q Consensus 67 ~~~dvIil~vp~~~~v-~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~----~gi~~ld~~vsGg~~~a~~G~~ 141 (490)
.+|+||+|||....+ .+++.++.+.++++.+|++. |+.+..+ ++.+.+.. .|.||+ .|+...+- ..
T Consensus 114 -~aDlVIeaVpe~~~~k~~v~~~l~~~~~~~~ii~sn-Ts~~~~~-~la~~~~~~~~~ig~hf~-~P~~~~~l-----ve 184 (463)
T 1zcj_A 114 -TVDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTN-TSALNVD-DIASSTDRPQLVIGTHFF-SPAHVMRL-----LE 184 (463)
T ss_dssp -TCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEEC-CSSSCHH-HHHTTSSCGGGEEEEEEC-SSTTTCCE-----EE
T ss_pred -CCCEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeC-CCCcCHH-HHHHHhcCCcceEEeecC-CCccccee-----EE
Confidence 399999999986544 46678888889999999984 4443333 44333321 367776 45432110 13
Q ss_pred cCCC--CCcchHHHHHHHHHhhCCceeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHH
Q psy9637 142 LMPG--GNPAAWPALKPIFQKLNPSFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGG 219 (490)
Q Consensus 142 im~G--G~~~a~~~v~~ll~~l~~~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~~~ 219 (490)
++.| +++++++.++++++.++...+++++.. |. ++|+++.. .++|++.+.++ |+++++
T Consensus 185 vv~g~~t~~e~~~~~~~l~~~lGk~~v~v~~~~---gf------i~Nrll~~----~~~ea~~l~~~-------G~~~~~ 244 (463)
T 1zcj_A 185 VIPSRYSSPTTIATVMSLSKKIGKIGVVVGNCY---GF------VGNRMLAP----YYNQGFFLLEE-------GSKPED 244 (463)
T ss_dssp EEECSSCCHHHHHHHHHHHHHTTCEEEEBCCST---TT------THHHHHHH----HHHHHHHHHHT-------TCCHHH
T ss_pred EeCCCCCCHHHHHHHHHHHHHhCCEEEEECCCc---cH------HHHHHHHH----HHHHHHHHHHc-------CCCHHH
Confidence 4443 688999999999999999888887631 21 23333332 34888877643 899999
Q ss_pred HHHHHh
Q psy9637 220 IALMWR 225 (490)
Q Consensus 220 v~~i~~ 225 (490)
+.++++
T Consensus 245 id~~~~ 250 (463)
T 1zcj_A 245 VDGVLE 250 (463)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998885
|
| >2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.46 E-value=2.1e-15 Score=151.46 Aligned_cols=149 Identities=17% Similarity=0.205 Sum_probs=116.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHHC-CC-eEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCch
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDH-GF-TVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSA 81 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~-G~-~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~ 81 (490)
.++|+|||+|.||..++.+|.+. |+ +|.+|||++++.+++.+.... ++..+++++++++. +|+|++|+|..
T Consensus 135 ~~~igiIG~G~~g~~~a~~l~~~~g~~~V~v~dr~~~~~~~l~~~~~~--~~~~~~~~~e~v~~---aDiVi~atp~~-- 207 (312)
T 2i99_A 135 SEVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNRTKENAEKFADTVQG--EVRVCSSVQEAVAG---ADVIITVTLAT-- 207 (312)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCCCSEEEEECSSHHHHHHHHHHSSS--CCEECSSHHHHHTT---CSEEEECCCCS--
T ss_pred CcEEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHhhC--CeEEeCCHHHHHhc---CCEEEEEeCCC--
Confidence 46899999999999999999886 76 899999999999998865221 24467899999887 89999999964
Q ss_pred HHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccc----cCC-CCCc---cccccCC-ccCCCCCcchHH
Q psy9637 82 VDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVG----CGV-SGGE---DGARYGP-SLMPGGNPAAWP 152 (490)
Q Consensus 82 v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld----~~v-sGg~---~~a~~G~-~im~GG~~~a~~ 152 (490)
+.++.. +.+++|++|+|+|+..|.. .++.+.+.++|..|+| +|+ +|+. +++..|+ ..|++|+.+.++
T Consensus 208 -~~v~~~--~~l~~g~~vi~~g~~~p~~-~el~~~~~~~g~~~vD~~~~a~~~~G~~~~~~~~~~g~L~~~v~G~~~~~~ 283 (312)
T 2i99_A 208 -EPILFG--EWVKPGAHINAVGASRPDW-RELDDELMKEAVLYVDSQEAALKESGDVLLSGAEIFAELGEVIKGVKPAHC 283 (312)
T ss_dssp -SCCBCG--GGSCTTCEEEECCCCSTTC-CSBCHHHHHHSEEEESCHHHHHHHCHHHHTTTCCCCEEHHHHHHTSSCCCT
T ss_pred -CcccCH--HHcCCCcEEEeCCCCCCCc-eeccHHHHhcCEEEECCHHHHHhhcCCcccChhhccccHHHHhCCCCCCCC
Confidence 233322 5688999999998887753 5556778888999999 787 5554 5667777 889999887777
Q ss_pred HHHHHHHhhCC
Q psy9637 153 ALKPIFQKLNP 163 (490)
Q Consensus 153 ~v~~ll~~l~~ 163 (490)
+..++|+.+|.
T Consensus 284 ~~~~vf~~~G~ 294 (312)
T 2i99_A 284 EKTTVFKSLGM 294 (312)
T ss_dssp TSCEEEECCCC
T ss_pred CCcEEEECCCh
Confidence 66677766654
|
| >3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.46 E-value=2.9e-14 Score=141.79 Aligned_cols=253 Identities=13% Similarity=0.103 Sum_probs=149.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
+|||+|||+|.||..+|..|+++|++|++|+|+++.++.....+. .......++.+.+ .+.+|+||++||+. +++
T Consensus 2 ~mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~--~~~~~~~~~~~~~--~~~~D~vilavk~~-~~~ 76 (294)
T 3g17_A 2 SLSVAIIGPGAVGTTIAYELQQSLPHTTLIGRHAKTITYYTVPHA--PAQDIVVKGYEDV--TNTFDVIIIAVKTH-QLD 76 (294)
T ss_dssp -CCEEEECCSHHHHHHHHHHHHHCTTCEEEESSCEEEEEESSTTS--CCEEEEEEEGGGC--CSCEEEEEECSCGG-GHH
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeccCcEEEEecCCe--eccceecCchHhc--CCCCCEEEEeCCcc-CHH
Confidence 369999999999999999999999999999999654321111110 0111122333322 13489999999994 899
Q ss_pred HHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHc----cccccccCCCCCccccccCC-ccCCCCCcchHHHHHHHH
Q psy9637 84 DFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAK----GLLYVGCGVSGGEDGARYGP-SLMPGGNPAAWPALKPIF 158 (490)
Q Consensus 84 ~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~----gi~~ld~~vsGg~~~a~~G~-~im~GG~~~a~~~v~~ll 158 (490)
++++.+.+.+.++.+||...|+...... +... |+.++.+-.+| |..+..++ .+.. ++.+..+.+..+|
T Consensus 77 ~~l~~l~~~l~~~~~iv~~~nGi~~~~~-----~~~~~v~~g~~~~~a~~~~-pg~v~~~~~~~~~-~~~~~~~~l~~~l 149 (294)
T 3g17_A 77 AVIPHLTYLAHEDTLIILAQNGYGQLEH-----IPFKNVCQAVVYISGQKKG-DVVTHFRDYQLRI-QDNALTRQFRDLV 149 (294)
T ss_dssp HHGGGHHHHEEEEEEEEECCSSCCCGGG-----CCCSCEEECEEEEEEEEET-TEEEEEEEEEEEE-ECSHHHHHHHHHT
T ss_pred HHHHHHHHhhCCCCEEEEeccCcccHhh-----CCCCcEEEEEEEEEEEEcC-CCEEEECCCEEec-CccHHHHHHHHHH
Confidence 9999999999888999999998754322 1111 22222222222 11111122 2222 4556677788888
Q ss_pred HhhCCceeeCCCCCCCCCCHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHhCCCCCHH
Q psy9637 159 QKLNPSFETSAPTPKPQRDKKEFLENIRQALYA--------------------SKIVSYAQGFMLMRQAAEIHGWKLNYG 218 (490)
Q Consensus 159 ~~l~~~~~~~g~~g~~~g~~a~~~Kll~n~l~~--------------------~~~~~~aE~~~la~~a~~~~~~Gld~~ 218 (490)
+.-+.++...... ....+-|++.|+... .....+.|+..++++. |..++.+
T Consensus 150 ~~~~~~~~~~~di-----~~~~w~Kl~~N~~inl~al~~~~~g~~l~~~~~~~l~~~~~~E~~~va~a~----G~~l~~~ 220 (294)
T 3g17_A 150 QDSQIDIVLEANI-----QQAIWYKLLVNLGINSITALGRQTVAIMHNPEIRILCRQLLLDGCRVAQAE----GLNFSEQ 220 (294)
T ss_dssp TTSSCEEEEESSH-----HHHHHHHHHHHHHHHHHHHHHTSCGGGGGSHHHHHHHHHHHHHHHHHHHHT----TCCCCHH
T ss_pred HhCCCceEEChHH-----HHHHHHHHHHHHHHHHHHHHCCChHHHHcCHHHHHHHHHHHHHHHHHHHHc----CCCCCHH
Confidence 7766555544432 246788888887433 1123345555555554 4445555
Q ss_pred HHHHHHhc----ccchhhHhHhHhHHhhccCcccccccCC-hhHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHH
Q psy9637 219 GIALMWRG----GCIIRSVFLGNIKAAFDKNPALSNLLLD-PFFKDAIHATQSSWRAVVSQSALLGIPTPAFATALAFYD 293 (490)
Q Consensus 219 ~v~~i~~~----g~~~~s~~l~~i~~~~~~~~~~~~~~~~-~~f~~~l~~~~kDl~~~~~~A~~~gv~~P~~~aa~~~~~ 293 (490)
.+.+.+.. ..-.+|.+++++... +..+ +.+ ...+++.|+++|+++|..+..++.++
T Consensus 221 ~~~~~~~~~~~~~~~~~sSM~qD~~~g---------r~tEid~i----------~G~vv~~a~~~gv~~P~~~~l~~ll~ 281 (294)
T 3g17_A 221 TVDTIMTIYQGYPDEMGTSMYYDIVHQ---------QPLEVEAI----------QGFIYRRAREHNLDTPYLDTIYSFLR 281 (294)
T ss_dssp HHHHHHHHHHTSCTTCCCHHHHHHHTT---------CCCSGGGT----------HHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCCCCcHHHHHHcC---------CCccHHHh----------hhHHHHHHHHhCCCCChHHHHHHHHH
Confidence 44443321 111122333332111 0000 111 46789999999999999999999888
Q ss_pred HHH
Q psy9637 294 GYR 296 (490)
Q Consensus 294 ~~~ 296 (490)
...
T Consensus 282 ~~e 284 (294)
T 3g17_A 282 AYQ 284 (294)
T ss_dssp HHH
T ss_pred HHH
Confidence 664
|
| >1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.45 E-value=4.4e-13 Score=135.98 Aligned_cols=191 Identities=15% Similarity=0.075 Sum_probs=122.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHH-HHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchH
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAK-VDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAV 82 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~-~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v 82 (490)
.|+|+|||+|.||.++|.+|.++|++|++|||++++ .+...+.|. ..+ ++.++++. +|+|+++||+. ..
T Consensus 16 ~~~I~IIG~G~mG~alA~~L~~~G~~V~~~~~~~~~~~~~a~~~G~-----~~~-~~~e~~~~---aDvVilavp~~-~~ 85 (338)
T 1np3_A 16 GKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGL-----KVA-DVKTAVAA---ADVVMILTPDE-FQ 85 (338)
T ss_dssp TSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHTTC-----EEE-CHHHHHHT---CSEEEECSCHH-HH
T ss_pred CCEEEEECchHHHHHHHHHHHHCcCEEEEEECChHHHHHHHHHCCC-----EEc-cHHHHHhc---CCEEEEeCCcH-HH
Confidence 368999999999999999999999999999999866 444444443 234 88888876 99999999995 67
Q ss_pred HHHHH-hhcccCCCCCEEEcCCCCChHHHHHHHHHHH-HccccccccCCCCCcccc------ccCC-ccCC---CCCcch
Q psy9637 83 DDFID-KLVPLLEKGDIIIDGGNSEYQDTDRRSKALE-AKGLLYVGCGVSGGEDGA------RYGP-SLMP---GGNPAA 150 (490)
Q Consensus 83 ~~vl~-~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~-~~gi~~ld~~vsGg~~~a------~~G~-~im~---GG~~~a 150 (490)
.+++. ++.+.++++.+|+|+++. . . ....+. ..++.|+....+|..... ..|. .+++ +.++++
T Consensus 86 ~~v~~~~i~~~l~~~~ivi~~~gv--~-~--~~~~~~~~~~~~vv~~~P~gp~~a~~~l~~~G~g~~~ii~~~~~~~~~a 160 (338)
T 1np3_A 86 GRLYKEEIEPNLKKGATLAFAHGF--S-I--HYNQVVPRADLDVIMIAPKAPGHTVRSEFVKGGGIPDLIAIYQDASGNA 160 (338)
T ss_dssp HHHHHHHTGGGCCTTCEEEESCCH--H-H--HTTSSCCCTTCEEEEEEESSCSHHHHHHHHTTCCCCEEEEEEECSSSCH
T ss_pred HHHHHHHHHhhCCCCCEEEEcCCc--h-h--HHHhhcCCCCcEEEeccCCCCchhHHHHHhccCCCeEEEEecCCCCHHH
Confidence 88998 999999999999998542 2 1 222222 334555543223322111 1144 3322 346788
Q ss_pred HHHHHHHHHhhCC-c--eeeCCCCCCCCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Q psy9637 151 WPALKPIFQKLNP-S--FETSAPTPKPQRDKKEFLENIRQ-ALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGI 220 (490)
Q Consensus 151 ~~~v~~ll~~l~~-~--~~~~g~~g~~~g~~a~~~Kll~n-~l~~~~~~~~aE~~~la~~a~~~~~~Gld~~~v 220 (490)
.+.++.+++.+|. . ++.+.+.. .........+ .+.++....++.++..+... |++++..
T Consensus 161 ~~~~~~l~~~lG~~~agv~~~~~~~-----~~~~~~~~s~~~l~G~lp~~ia~~~e~l~~~------Gl~~~~a 223 (338)
T 1np3_A 161 KNVALSYACGVGGGRTGIIETTFKD-----ETETDLFGEQAVLCGGCVELVKAGFETLVEA------GYAPEMA 223 (338)
T ss_dssp HHHHHHHHHHTTHHHHCEEECCHHH-----HHHHHHHHHHHTTTHHHHHHHHHHHHHHHHT------TCCHHHH
T ss_pred HHHHHHHHHHcCCCccceEeechhc-----ccchHHHHHHHHHhhhHHHHHHHHHHHHHHc------CCCHHHH
Confidence 9999999999998 4 55443210 1122233333 23333344444445444455 8887643
|
| >3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.8e-13 Score=136.98 Aligned_cols=97 Identities=14% Similarity=0.088 Sum_probs=72.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCC---C-CeeccCCH-HHHHhhCCCCcEEEEecCC
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKG---T-NIIGAHSL-EELVKNLKKPRRVMMLVKA 78 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~---~-~i~~~~s~-~e~v~~l~~~dvIil~vp~ 78 (490)
+|||+|||+|.||..+|..|+ +|++|++|+|++++.+.+.+.|... . ......+. .+ ..+.+|+||++||+
T Consensus 2 ~mkI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~---~~~~~D~vilavK~ 77 (307)
T 3ego_A 2 SLKIGIIGGGSVGLLCAYYLS-LYHDVTVVTRRQEQAAAIQSEGIRLYKGGEEFRADCSADTS---INSDFDLLVVTVKQ 77 (307)
T ss_dssp CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHHHHHHHHHHCEEEEETTEEEEECCEEESS---CCSCCSEEEECCCG
T ss_pred CCEEEEECCCHHHHHHHHHHh-cCCceEEEECCHHHHHHHHhCCceEecCCCeeccccccccc---ccCCCCEEEEEeCH
Confidence 379999999999999999999 9999999999999888887765420 0 00000000 11 23358999999999
Q ss_pred CchHHHHHHhhcccCCCCCEEEcCCCCCh
Q psy9637 79 GSAVDDFIDKLVPLLEKGDIIIDGGNSEY 107 (490)
Q Consensus 79 ~~~v~~vl~~l~~~l~~g~iiId~s~~~~ 107 (490)
.+++++++.+.+. .++. ||...|+..
T Consensus 78 -~~~~~~l~~l~~~-~~~~-ivs~~nGi~ 103 (307)
T 3ego_A 78 -HQLQSVFSSLERI-GKTN-ILFLQNGMG 103 (307)
T ss_dssp -GGHHHHHHHTTSS-CCCE-EEECCSSSH
T ss_pred -HHHHHHHHHhhcC-CCCe-EEEecCCcc
Confidence 4899999988775 4445 899999874
|
| >3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.8e-12 Score=128.35 Aligned_cols=117 Identities=15% Similarity=0.236 Sum_probs=99.9
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
++|||||+|.||..+|++|...|++|++|||++++.+. +...++++++++. +|+|++++|....++.
T Consensus 123 ~tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~----------~~~~~~l~ell~~---aDiV~l~~P~t~~t~~ 189 (290)
T 3gvx_A 123 KALGILGYGGIGRRVAHLAKAFGMRVIAYTRSSVDQNV----------DVISESPADLFRQ---SDFVLIAIPLTDKTRG 189 (290)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCEEEEECSSCCCTTC----------SEECSSHHHHHHH---CSEEEECCCCCTTTTT
T ss_pred chheeeccCchhHHHHHHHHhhCcEEEEEecccccccc----------ccccCChHHHhhc---cCeEEEEeeccccchh
Confidence 68999999999999999999999999999998754321 2246799999988 9999999998778877
Q ss_pred HH-HhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCCCcc
Q psy9637 85 FI-DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGGED 134 (490)
Q Consensus 85 vl-~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg~~ 134 (490)
++ .+.++.+++|.++||+|++.+.+...+.+.+.+.++......|++.++
T Consensus 190 li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP 240 (290)
T 3gvx_A 190 MVNSRLLANARKNLTIVNVARADVVSKPDMIGFLKERSDVWYLSDVWWNEP 240 (290)
T ss_dssp CBSHHHHTTCCTTCEEEECSCGGGBCHHHHHHHHHHCTTCEEEESCCTTTT
T ss_pred hhhHHHHhhhhcCceEEEeehhcccCCcchhhhhhhccceEEeeccccCCc
Confidence 77 667788999999999999999999999999998888776666766654
|
| >3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=5.4e-11 Score=119.10 Aligned_cols=193 Identities=14% Similarity=0.172 Sum_probs=131.6
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH-----------cccCC---------CCeeccCCHHHHHh
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLA-----------NEAKG---------TNIIGAHSLEELVK 64 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~-----------~g~~~---------~~i~~~~s~~e~v~ 64 (490)
.||+|||+|.||..+|..++.+|++|++||++++.++...+ .+... .++..+++++++++
T Consensus 7 ~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~~~~l~~a~~ 86 (319)
T 3ado_A 7 GDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSCTNLAEAVE 86 (319)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEEECCHHHHTT
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhcccccchHhHhc
Confidence 58999999999999999999999999999999987654322 21110 23556778888777
Q ss_pred hCCCCcEEEEecCCCchHH-HHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHH--H--ccccccccC-CCCCcccccc
Q psy9637 65 NLKKPRRVMMLVKAGSAVD-DFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALE--A--KGLLYVGCG-VSGGEDGARY 138 (490)
Q Consensus 65 ~l~~~dvIil~vp~~~~v~-~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~--~--~gi~~ld~~-vsGg~~~a~~ 138 (490)
. +|+|+-+||..-.++ +++.+|-+.++++.|+-..+++.+.+.. .+.+. + -|.||+..| +.--.
T Consensus 87 ~---ad~ViEav~E~l~iK~~lf~~l~~~~~~~aIlaSNTSsl~is~i--a~~~~~p~r~ig~HffNP~~~m~LV----- 156 (319)
T 3ado_A 87 G---VVHIQECVPENLDLKRKIFAQLDSIVDDRVVLSSSSSCLLPSKL--FTGLAHVKQCIVAHPVNPPYYIPLV----- 156 (319)
T ss_dssp T---EEEEEECCCSCHHHHHHHHHHHHTTCCSSSEEEECCSSCCHHHH--HTTCTTGGGEEEEEECSSTTTCCEE-----
T ss_pred c---CcEEeeccccHHHHHHHHHHHHHHHhhhcceeehhhhhccchhh--hhhccCCCcEEEecCCCCccccchH-----
Confidence 6 899999999988876 5668888888888887766666554332 22222 1 166766544 11111
Q ss_pred CCccCCC--CCcchHHHHHHHHHhhCCcee-eCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q psy9637 139 GPSLMPG--GNPAAWPALKPIFQKLNPSFE-TSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKL 215 (490)
Q Consensus 139 G~~im~G--G~~~a~~~v~~ll~~l~~~~~-~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gl 215 (490)
=++.| -++++++++..+++.++.+.+ ...+.. | ..+ | -.....+.|++.+.+.- ..
T Consensus 157 --Eiv~g~~Ts~~~~~~~~~~~~~~gk~pv~v~kd~p---G---Fi~----N---Rl~~~~~~EA~~lv~eG------va 215 (319)
T 3ado_A 157 --ELVPHPETSPATVDRTHALMRKIGQSPVRVLKEID---G---FVL----N---RLQYAIISEAWRLVEEG------IV 215 (319)
T ss_dssp --EEEECTTCCHHHHHHHHHHHHHTTCEEEECSSCCT---T---TTH----H---HHHHHHHHHHHHHHHTT------SS
T ss_pred --HhcCCCCCcHHHHHHHHHHHHHhCCccCCcCCCCC---C---EeH----H---HHHHHHHHHHHHHHHhC------CC
Confidence 12222 367899999999999998765 334431 1 111 1 22345667888887775 67
Q ss_pred CHHHHHHHHhccc
Q psy9637 216 NYGGIALMWRGGC 228 (490)
Q Consensus 216 d~~~v~~i~~~g~ 228 (490)
+++++=.+++.|.
T Consensus 216 s~edID~~~~~g~ 228 (319)
T 3ado_A 216 SPSDLDLVMSDGL 228 (319)
T ss_dssp CHHHHHHHHHTTH
T ss_pred CHHHHHHHHHhCC
Confidence 8888888887664
|
| >2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.25 E-value=6.1e-13 Score=127.96 Aligned_cols=145 Identities=17% Similarity=0.223 Sum_probs=109.8
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeE-EEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTV-VAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V-~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
|||||||+|.||..++.+|.+.|++| .+||+++ +.+. .+++++++++ +.+|+|++|+|+. ...
T Consensus 1 m~vgiIG~G~mG~~~~~~l~~~g~~lv~v~d~~~-~~~~------------~~~~~~~l~~--~~~DvVv~~~~~~-~~~ 64 (236)
T 2dc1_A 1 MLVGLIGYGAIGKFLAEWLERNGFEIAAILDVRG-EHEK------------MVRGIDEFLQ--REMDVAVEAASQQ-AVK 64 (236)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSC-CCTT------------EESSHHHHTT--SCCSEEEECSCHH-HHH
T ss_pred CEEEEECCCHHHHHHHHHHhcCCCEEEEEEecCc-chhh------------hcCCHHHHhc--CCCCEEEECCCHH-HHH
Confidence 48999999999999999999999997 6999984 2111 3678999884 3489999999985 444
Q ss_pred HHHHhhcccCCCCCEEEcCCCCChHHH---HHHHHHHHHcccc-ccccCCCCCccccccCCccCCCCCcchHHHHHHHHH
Q psy9637 84 DFIDKLVPLLEKGDIIIDGGNSEYQDT---DRRSKALEAKGLL-YVGCGVSGGEDGARYGPSLMPGGNPAAWPALKPIFQ 159 (490)
Q Consensus 84 ~vl~~l~~~l~~g~iiId~s~~~~~~~---~~~~~~l~~~gi~-~ld~~vsGg~~~a~~G~~im~GG~~~a~~~v~~ll~ 159 (490)
+++. ..+++|..||+.++..+... .++.+.++++|.. +++.|++|+...++.+.. |++...++..+|.++
T Consensus 65 ~~~~---~~l~~G~~vv~~~~~~~~~~~~~~~l~~~a~~~g~~~~i~~~~~g~~~~~~~~~~---~~~~~~~~~~~~~~~ 138 (236)
T 2dc1_A 65 DYAE---KILKAGIDLIVLSTGAFADRDFLSRVREVCRKTGRRVYIASGAIGGLDAIFSASE---LIEEIVLTTRKNWRQ 138 (236)
T ss_dssp HHHH---HHHHTTCEEEESCGGGGGSHHHHHHHHHHHHHHCCCEEECCTTCSCHHHHHHTGG---GEEEEEEEEEEEGGG
T ss_pred HHHH---HHHHCCCcEEEECcccCChHHHHHHHHHHHHhcCCeEEecCccccChHHHHHhhc---cccEEEEEEEcChHH
Confidence 4443 34568999999988654333 5555666777877 789999999987776653 777777777777787
Q ss_pred hhCCceeeCCCC
Q psy9637 160 KLNPSFETSAPT 171 (490)
Q Consensus 160 ~l~~~~~~~g~~ 171 (490)
.++..+++.|+.
T Consensus 139 ~~~~~~~~~G~~ 150 (236)
T 2dc1_A 139 FGRKGVIFEGSA 150 (236)
T ss_dssp TTSCEEEEEEEH
T ss_pred cCcceEEEeccH
Confidence 778777777763
|
| >2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A | Back alignment and structure |
|---|
Probab=99.24 E-value=1.4e-11 Score=124.45 Aligned_cols=110 Identities=15% Similarity=0.251 Sum_probs=90.9
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
++|||||+|.||..+|++|...|++|++|||++++.+.+.+.+. ... +++++++. +|+|++++|....++.
T Consensus 156 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~-----~~~-~l~e~l~~---aDvVi~~vp~~~~t~~ 226 (330)
T 2gcg_A 156 STVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPEEAAEFQA-----EFV-STPELAAQ---SDFIVVACSLTPATEG 226 (330)
T ss_dssp CEEEEECCSHHHHHHHHHHGGGTCCEEEEESSSCCHHHHHTTTC-----EEC-CHHHHHHH---CSEEEECCCCCTTTTT
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcchhHHHhcCc-----eeC-CHHHHHhh---CCEEEEeCCCChHHHH
Confidence 68999999999999999999999999999998766555543332 233 88888887 9999999999777777
Q ss_pred HH-HhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccc
Q psy9637 85 FI-DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLL 123 (490)
Q Consensus 85 vl-~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~ 123 (490)
++ .++++.++++.++|+++++.+.+...+.+.+.+.++.
T Consensus 227 ~i~~~~~~~mk~gailIn~srg~~v~~~aL~~aL~~~~i~ 266 (330)
T 2gcg_A 227 LCNKDFFQKMKETAVFINISRGDVVNQDDLYQALASGKIA 266 (330)
T ss_dssp CBSHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSS
T ss_pred hhCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHcCCcc
Confidence 76 4667788999999999999888888888888776554
|
| >3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B* | Back alignment and structure |
|---|
Probab=99.24 E-value=1.3e-10 Score=120.30 Aligned_cols=96 Identities=14% Similarity=0.129 Sum_probs=77.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHH-CCCeEEEEe---CChHHHHHHHHccc-------CCC-------Cee-ccCCHHHHHh
Q psy9637 4 KGDIGLIGLAVMGQNLILNMND-HGFTVVAYN---RTTAKVDSFLANEA-------KGT-------NII-GAHSLEELVK 64 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~-~G~~V~v~d---r~~~~~~~l~~~g~-------~~~-------~i~-~~~s~~e~v~ 64 (490)
+|||+|||+|.||..+|..|++ +||+|++|| |++++++.+.+... .+. ++. .++++++++.
T Consensus 2 ~mkI~ViGaG~~G~~~a~~La~~~G~~V~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 81 (404)
T 3c7a_A 2 TVKVCVCGGGNGAHTLSGLAASRDGVEVRVLTLFADEAERWTKALGADELTVIVNEKDGTQTEVKSRPKVITKDPEIAIS 81 (404)
T ss_dssp CEEEEEECCSHHHHHHHHHHTTSTTEEEEEECCSTTHHHHHHHHHTTSCEEEEEECSSSCEEEEEECCSEEESCHHHHHT
T ss_pred CceEEEECCCHHHHHHHHHHHhCCCCEEEEEeCCCCcHHHHHHHHhhccceeeeecCCCccceeeccceEEeCCHHHHhC
Confidence 4699999999999999999998 599999999 88888887543321 001 122 4667888776
Q ss_pred hCCCCcEEEEecCCCchHHHHHHhhcccCCCCCEEEcCC
Q psy9637 65 NLKKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGG 103 (490)
Q Consensus 65 ~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~s 103 (490)
. +|+||++||+. .++++++++.+.+.++.+|++..
T Consensus 82 ~---aD~Vilav~~~-~~~~v~~~l~~~l~~~~ivv~~~ 116 (404)
T 3c7a_A 82 G---ADVVILTVPAF-AHEGYFQAMAPYVQDSALIVGLP 116 (404)
T ss_dssp T---CSEEEECSCGG-GHHHHHHHHTTTCCTTCEEEETT
T ss_pred C---CCEEEEeCchH-HHHHHHHHHHhhCCCCcEEEEcC
Confidence 6 89999999995 78999999999999999999853
|
| >3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.24 E-value=9e-12 Score=125.30 Aligned_cols=119 Identities=17% Similarity=0.233 Sum_probs=97.0
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
++|||||+|.||..+|++|...|++|++|||+++..+.+.. .....+++++++. +|+|++++|....++.
T Consensus 138 ktvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~-------~~~~~~l~ell~~---aDvV~l~lPlt~~t~~ 207 (324)
T 3evt_A 138 QQLLIYGTGQIGQSLAAKASALGMHVIGVNTTGHPADHFHE-------TVAFTATADALAT---ANFIVNALPLTPTTHH 207 (324)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCCCCTTCSE-------EEEGGGCHHHHHH---CSEEEECCCCCGGGTT
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCEEEEECCCcchhHhHhh-------ccccCCHHHHHhh---CCEEEEcCCCchHHHH
Confidence 58999999999999999999999999999998764332211 1235688899888 9999999998888887
Q ss_pred HH-HhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCCCc
Q psy9637 85 FI-DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGGE 133 (490)
Q Consensus 85 vl-~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg~ 133 (490)
++ .+.+..+++|.++||+|++...+...+.+.+.+..+......|+..+
T Consensus 208 li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~gA~lDV~~~E 257 (324)
T 3evt_A 208 LFSTELFQQTKQQPMLINIGRGPAVDTTALMTALDHHQLSMAALDVTEPE 257 (324)
T ss_dssp CBSHHHHHTCCSCCEEEECSCGGGBCHHHHHHHHHTTSCSEEEESSCSSS
T ss_pred hcCHHHHhcCCCCCEEEEcCCChhhhHHHHHHHHHhCCceEEEeCCCCCC
Confidence 77 56778899999999999999999999999998887765444555444
|
| >2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=1.7e-11 Score=124.11 Aligned_cols=118 Identities=24% Similarity=0.316 Sum_probs=94.5
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
++|||||+|.||..+|++|...|++|++|||++++ +...+.+. . ..++.+++.. +|+|++++|....++.
T Consensus 151 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~-~~~~~~g~-----~-~~~l~~~l~~---aDvVil~vp~~~~t~~ 220 (334)
T 2dbq_A 151 KTIGIIGLGRIGQAIAKRAKGFNMRILYYSRTRKE-EVERELNA-----E-FKPLEDLLRE---SDFVVLAVPLTRETYH 220 (334)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCH-HHHHHHCC-----E-ECCHHHHHHH---CSEEEECCCCCTTTTT
T ss_pred CEEEEEccCHHHHHHHHHHHhCCCEEEEECCCcch-hhHhhcCc-----c-cCCHHHHHhh---CCEEEECCCCChHHHH
Confidence 68999999999999999999999999999999877 44433332 1 3588888887 9999999999876777
Q ss_pred HH-HhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCCC
Q psy9637 85 FI-DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGG 132 (490)
Q Consensus 85 vl-~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg 132 (490)
++ .++.+.++++.++||+|++.+.+...+.+.+....+......|++.
T Consensus 221 ~i~~~~~~~mk~~ailIn~srg~~v~~~aL~~aL~~~~i~ga~lDv~~~ 269 (334)
T 2dbq_A 221 LINEERLKLMKKTAILINIARGKVVDTNALVKALKEGWIAGAGLDVFEE 269 (334)
T ss_dssp CBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSEEEESCCSS
T ss_pred hhCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCeeEEEecCCCC
Confidence 77 4677788999999999999888888888888776554433334443
|
| >3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=99.23 E-value=1.5e-11 Score=125.03 Aligned_cols=118 Identities=14% Similarity=0.186 Sum_probs=97.0
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
++|||||+|.||..+|++|...|++|++|||++.. +...+.+. ..+++++++++. +|+|++++|....++.
T Consensus 161 ~tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~~~~~g~-----~~~~~l~ell~~---aDiV~l~~Plt~~t~~ 231 (352)
T 3gg9_A 161 QTLGIFGYGKIGQLVAGYGRAFGMNVLVWGRENSK-ERARADGF-----AVAESKDALFEQ---SDVLSVHLRLNDETRS 231 (352)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSHHHH-HHHHHTTC-----EECSSHHHHHHH---CSEEEECCCCSTTTTT
T ss_pred CEEEEEeECHHHHHHHHHHHhCCCEEEEECCCCCH-HHHHhcCc-----eEeCCHHHHHhh---CCEEEEeccCcHHHHH
Confidence 68999999999999999999999999999998643 44444443 356799999988 9999999998877777
Q ss_pred HH-HhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCC
Q psy9637 85 FI-DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSG 131 (490)
Q Consensus 85 vl-~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsG 131 (490)
++ .+.++.+++|.++||++++...+...+.+.+.+..+......|+.
T Consensus 232 li~~~~l~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gA~lDV~~ 279 (352)
T 3gg9_A 232 IITVADLTRMKPTALFVNTSRAELVEENGMVTALNRGRPGMAAIDVFE 279 (352)
T ss_dssp CBCHHHHTTSCTTCEEEECSCGGGBCTTHHHHHHHHTSSSEEEECCCS
T ss_pred hhCHHHHhhCCCCcEEEECCCchhhcHHHHHHHHHhCCccEEEecccC
Confidence 66 567788999999999999999999999999998877543333443
|
| >3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A | Back alignment and structure |
|---|
Probab=99.22 E-value=1.2e-11 Score=125.67 Aligned_cols=120 Identities=15% Similarity=0.194 Sum_probs=98.9
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
++|||||+|.||..+|++|...|++|.+|||++...+.+.+.+. ..+++++++++. +|+|++++|....++.
T Consensus 165 ktvGIIG~G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~g~-----~~~~~l~ell~~---aDvV~l~~Plt~~t~~ 236 (351)
T 3jtm_A 165 KTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMAPELEKETGA-----KFVEDLNEMLPK---CDVIVINMPLTEKTRG 236 (351)
T ss_dssp CEEEEECCSHHHHHHHHHHGGGCCEEEEECSSCCCHHHHHHHCC-----EECSCHHHHGGG---CSEEEECSCCCTTTTT
T ss_pred CEEeEEEeCHHHHHHHHHHHHCCCEEEEeCCCccCHHHHHhCCC-----eEcCCHHHHHhc---CCEEEECCCCCHHHHH
Confidence 68999999999999999999999999999998755555544443 246799999988 9999999998777777
Q ss_pred HH-HhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCCC
Q psy9637 85 FI-DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGG 132 (490)
Q Consensus 85 vl-~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg 132 (490)
++ .+.++.+++|.++||++++...+...+.+.+.+..+......|+..
T Consensus 237 li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~ga~lDV~~~ 285 (351)
T 3jtm_A 237 MFNKELIGKLKKGVLIVNNARGAIMERQAVVDAVESGHIGGYSGDVWDP 285 (351)
T ss_dssp CBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCSS
T ss_pred hhcHHHHhcCCCCCEEEECcCchhhCHHHHHHHHHhCCccEEEeCCCCC
Confidence 76 5677889999999999999999999999999888776433344433
|
| >4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=1.1e-11 Score=125.09 Aligned_cols=120 Identities=14% Similarity=0.196 Sum_probs=98.3
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
++|||||+|.||..+|++|...|++|++|||++.+.+...+.+.. ..+++++++. +|+|++++|....++.
T Consensus 146 ~tvGIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~------~~~l~ell~~---aDvV~l~~P~t~~t~~ 216 (330)
T 4e5n_A 146 ATVGFLGMGAIGLAMADRLQGWGATLQYHEAKALDTQTEQRLGLR------QVACSELFAS---SDFILLALPLNADTLH 216 (330)
T ss_dssp CEEEEECCSHHHHHHHHHTTTSCCEEEEECSSCCCHHHHHHHTEE------ECCHHHHHHH---CSEEEECCCCSTTTTT
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCCCcHhHHHhcCce------eCCHHHHHhh---CCEEEEcCCCCHHHHH
Confidence 689999999999999999999999999999987444444443432 4589999988 9999999998877777
Q ss_pred HH-HhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCCCc
Q psy9637 85 FI-DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGGE 133 (490)
Q Consensus 85 vl-~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg~ 133 (490)
++ .+.++.+++|.++||++++...+...+.+.+.+.++......|+..+
T Consensus 217 li~~~~l~~mk~gailIN~arg~~vd~~aL~~aL~~g~i~gA~lDV~~~E 266 (330)
T 4e5n_A 217 LVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGYAADVFEME 266 (330)
T ss_dssp CBCHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCGGG
T ss_pred HhCHHHHhhCCCCcEEEECCCCchhCHHHHHHHHHhCCccEEEecccccc
Confidence 77 57788899999999999999999999999999888774444444444
|
| >4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.20 E-value=2.3e-11 Score=122.93 Aligned_cols=116 Identities=23% Similarity=0.347 Sum_probs=75.4
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
++|||||+|.||..+|++|...|++|.+|||++++ ..+ .....+++++++. +|+|++++|....++.
T Consensus 172 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~-----~~~-----~~~~~sl~ell~~---aDvVil~vP~t~~t~~ 238 (340)
T 4dgs_A 172 KRIGVLGLGQIGRALASRAEAFGMSVRYWNRSTLS-----GVD-----WIAHQSPVDLARD---SDVLAVCVAASAATQN 238 (340)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCT-----TSC-----CEECSSHHHHHHT---CSEEEECC--------
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCccc-----ccC-----ceecCCHHHHHhc---CCEEEEeCCCCHHHHH
Confidence 68999999999999999999999999999998764 111 2346799999987 9999999998888888
Q ss_pred HH-HhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCCCc
Q psy9637 85 FI-DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGGE 133 (490)
Q Consensus 85 vl-~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg~ 133 (490)
++ ++.++.++++.++||++++...+...+.+.+++..+......|+..+
T Consensus 239 li~~~~l~~mk~gailIN~aRG~vvde~aL~~aL~~g~i~gA~LDVf~~E 288 (340)
T 4dgs_A 239 IVDASLLQALGPEGIVVNVARGNVVDEDALIEALKSGTIAGAGLDVFVNE 288 (340)
T ss_dssp --CHHHHHHTTTTCEEEECSCC--------------CCSSEEEESCCSSS
T ss_pred HhhHHHHhcCCCCCEEEECCCCcccCHHHHHHHHHcCCceEEEeCCcCCC
Confidence 88 67788899999999999999888888888888776654444444444
|
| >1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.20 E-value=3.4e-11 Score=120.34 Aligned_cols=109 Identities=23% Similarity=0.318 Sum_probs=90.8
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
++|||||+|.||..+|++|...|++|++|||++++ +...+.+.. ..+++++++. +|+|++++|....++.
T Consensus 143 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~-~~~~~~g~~------~~~l~ell~~---aDvV~l~~p~~~~t~~ 212 (307)
T 1wwk_A 143 KTIGIIGFGRIGYQVAKIANALGMNILLYDPYPNE-ERAKEVNGK------FVDLETLLKE---SDVVTIHVPLVESTYH 212 (307)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCH-HHHHHTTCE------ECCHHHHHHH---CSEEEECCCCSTTTTT
T ss_pred ceEEEEccCHHHHHHHHHHHHCCCEEEEECCCCCh-hhHhhcCcc------ccCHHHHHhh---CCEEEEecCCChHHhh
Confidence 58999999999999999999999999999999876 444444432 3488898887 9999999999877777
Q ss_pred HH-HhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccc
Q psy9637 85 FI-DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLL 123 (490)
Q Consensus 85 vl-~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~ 123 (490)
++ ++.++.+++|.++||++++...+...+.+.+.+..+.
T Consensus 213 li~~~~l~~mk~ga~lin~arg~~vd~~aL~~aL~~g~i~ 252 (307)
T 1wwk_A 213 LINEERLKLMKKTAILINTSRGPVVDTNALVKALKEGWIA 252 (307)
T ss_dssp CBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSS
T ss_pred hcCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHhCCCc
Confidence 76 4667789999999999998888888888888876554
|
| >2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B | Back alignment and structure |
|---|
Probab=99.19 E-value=2.1e-11 Score=123.97 Aligned_cols=119 Identities=22% Similarity=0.275 Sum_probs=95.0
Q ss_pred CcEEEEcccHHHHHHHHHHH-HCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMN-DHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~-~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
++|||||+|.||..+|++|. ..|++|++|||++++.+...+.+. ..+.+++++++. +|+|++++|....++
T Consensus 164 ~~vgIIG~G~IG~~vA~~l~~~~G~~V~~~d~~~~~~~~~~~~g~-----~~~~~l~ell~~---aDvVil~vp~~~~t~ 235 (348)
T 2w2k_A 164 HVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPADAETEKALGA-----ERVDSLEELARR---SDCVSVSVPYMKLTH 235 (348)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHTC-----EECSSHHHHHHH---CSEEEECCCCSGGGT
T ss_pred CEEEEEEECHHHHHHHHHHHHhcCCEEEEECCCCcchhhHhhcCc-----EEeCCHHHHhcc---CCEEEEeCCCChHHH
Confidence 58999999999999999999 999999999999766555443333 234588898887 999999999987777
Q ss_pred HHH-HhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCC
Q psy9637 84 DFI-DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSG 131 (490)
Q Consensus 84 ~vl-~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsG 131 (490)
.++ .++++.++++.+|||++++...+...+.+.+.+..+......|++
T Consensus 236 ~li~~~~l~~mk~gailin~srg~~vd~~aL~~aL~~~~i~gaglDv~~ 284 (348)
T 2w2k_A 236 HLIDEAFFAAMKPGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHE 284 (348)
T ss_dssp TCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTSEEEEEESSCT
T ss_pred HHhhHHHHhcCCCCCEEEECCCCchhCHHHHHHHHHhCCceEEEeccCC
Confidence 777 456778899999999999988888888888877655433334444
|
| >2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.19 E-value=2.3e-11 Score=121.95 Aligned_cols=109 Identities=22% Similarity=0.292 Sum_probs=90.7
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
++|||||+|.||..+|++|...|++|++|||++++. ...+.+.. ..+++++++. +|+|++++|....++.
T Consensus 143 ~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~-~~~~~g~~------~~~l~ell~~---aDvVvl~~P~~~~t~~ 212 (313)
T 2ekl_A 143 KTIGIVGFGRIGTKVGIIANAMGMKVLAYDILDIRE-KAEKINAK------AVSLEELLKN---SDVISLHVTVSKDAKP 212 (313)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCEEEEECSSCCHH-HHHHTTCE------ECCHHHHHHH---CSEEEECCCCCTTSCC
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCcchh-HHHhcCce------ecCHHHHHhh---CCEEEEeccCChHHHH
Confidence 689999999999999999999999999999998764 33343432 3488898887 9999999998776766
Q ss_pred HH-HhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccc
Q psy9637 85 FI-DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLL 123 (490)
Q Consensus 85 vl-~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~ 123 (490)
++ +..++.+++|.++||++++...+...+.+.+.+.++.
T Consensus 213 li~~~~l~~mk~ga~lIn~arg~~vd~~aL~~aL~~g~i~ 252 (313)
T 2ekl_A 213 IIDYPQFELMKDNVIIVNTSRAVAVNGKALLDYIKKGKVY 252 (313)
T ss_dssp SBCHHHHHHSCTTEEEEESSCGGGBCHHHHHHHHHTTCEE
T ss_pred hhCHHHHhcCCCCCEEEECCCCcccCHHHHHHHHHcCCCc
Confidence 66 5566788999999999999888888888888876654
|
| >1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=2.4e-11 Score=123.39 Aligned_cols=111 Identities=20% Similarity=0.272 Sum_probs=92.6
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
++|||||+|.||..+|++|...|++|++||+++++.. ....+. ..+.+++++++. +|+|++++|....++.
T Consensus 169 ~tvGIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~-~~~~g~-----~~~~~l~ell~~---aDvV~l~~P~t~~t~~ 239 (347)
T 1mx3_A 169 ETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGV-ERALGL-----QRVSTLQDLLFH---SDCVTLHCGLNEHNHH 239 (347)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCTTH-HHHHTC-----EECSSHHHHHHH---CSEEEECCCCCTTCTT
T ss_pred CEEEEEeECHHHHHHHHHHHHCCCEEEEECCCcchhh-HhhcCC-----eecCCHHHHHhc---CCEEEEcCCCCHHHHH
Confidence 6899999999999999999999999999999865421 122232 245689999987 9999999999877877
Q ss_pred HH-HhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccc
Q psy9637 85 FI-DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLY 124 (490)
Q Consensus 85 vl-~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ 124 (490)
++ ++.++.+++|.++||++++.+.+...+.+.+.+.++..
T Consensus 240 li~~~~l~~mk~gailIN~arg~~vd~~aL~~aL~~g~i~g 280 (347)
T 1mx3_A 240 LINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRG 280 (347)
T ss_dssp SBSHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHTSEEE
T ss_pred HhHHHHHhcCCCCCEEEECCCChHHhHHHHHHHHHhCCCcE
Confidence 77 66778899999999999999999999999998877654
|
| >2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.19 E-value=3.7e-11 Score=121.37 Aligned_cols=109 Identities=15% Similarity=0.224 Sum_probs=91.5
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
++|||||+|.||..+|++|...|++|++|||++++. ...+.+.. ..+++++++. +|+|++++|....++.
T Consensus 166 ~tvgIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~-~~~~~g~~------~~~l~ell~~---aDvV~l~~P~t~~t~~ 235 (335)
T 2g76_A 166 KTLGILGLGRIGREVATRMQSFGMKTIGYDPIISPE-VSASFGVQ------QLPLEEIWPL---CDFITVHTPLLPSTTG 235 (335)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSCHH-HHHHTTCE------ECCHHHHGGG---CSEEEECCCCCTTTTT
T ss_pred CEEEEEeECHHHHHHHHHHHHCCCEEEEECCCcchh-hhhhcCce------eCCHHHHHhc---CCEEEEecCCCHHHHH
Confidence 589999999999999999999999999999987653 33333332 3588888887 9999999999877887
Q ss_pred HH-HhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccc
Q psy9637 85 FI-DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLL 123 (490)
Q Consensus 85 vl-~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~ 123 (490)
++ .+.++.+++|.++||++++...+...+.+.+.+..+.
T Consensus 236 li~~~~l~~mk~gailIN~arg~vvd~~aL~~aL~~g~i~ 275 (335)
T 2g76_A 236 LLNDNTFAQCKKGVRVVNCARGGIVDEGALLRALQSGQCA 275 (335)
T ss_dssp SBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHTSEE
T ss_pred hhCHHHHhhCCCCcEEEECCCccccCHHHHHHHHHhCCcc
Confidence 77 5677889999999999999888888888888877654
|
| >4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.18 E-value=2.3e-10 Score=117.48 Aligned_cols=269 Identities=11% Similarity=0.025 Sum_probs=156.1
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC--------eEEEEeCChHH-----HHHHHHcccC---------CCCeeccCCHHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGF--------TVVAYNRTTAK-----VDSFLANEAK---------GTNIIGAHSLEEL 62 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~--------~V~v~dr~~~~-----~~~l~~~g~~---------~~~i~~~~s~~e~ 62 (490)
.||+|||.|.||++||..|+++|| +|.+|.|+++. .+.+.....+ +.++..++++.++
T Consensus 35 ~KI~ViGaGsWGTALA~~la~ng~~~~~~~~~~V~lw~r~~e~~~~~~~e~in~~~~N~~YLpgv~Lp~~i~~t~dl~~a 114 (391)
T 4fgw_A 35 FKVTVIGSGNWGTTIAKVVAENCKGYPEVFAPIVQMWVFEEEINGEKLTEIINTRHQNVKYLPGITLPDNLVANPDLIDS 114 (391)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHCTTTEEEEEEEECCCCBSSSCBHHHHHTTTCCBTTTBTTCCCCSSEEEESCHHHH
T ss_pred CeEEEECcCHHHHHHHHHHHHcCCCccccCCceEEEEEcchHhhhHHHHHHHHhcCcCcccCCCCcCCCCcEEeCCHHHH
Confidence 389999999999999999999886 59999988652 3334332211 3467788999998
Q ss_pred HhhCCCCcEEEEecCCCchHHHHHHhhcccCCCCCEEEcCCCCChHHH---HHHHHHHHHc-cccccccCCCCCccccc-
Q psy9637 63 VKNLKKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDT---DRRSKALEAK-GLLYVGCGVSGGEDGAR- 137 (490)
Q Consensus 63 v~~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~---~~~~~~l~~~-gi~~ld~~vsGg~~~a~- 137 (490)
++. +|+||++||. +.++++++++.++++++.++|.++.+....+ +...+.+.+. +. .+.+..||.-|.
T Consensus 115 l~~---ad~ii~avPs-~~~r~~l~~l~~~~~~~~~iv~~~KGie~~~~~~~~~se~i~e~~~~---~~~vLsGPs~A~E 187 (391)
T 4fgw_A 115 VKD---VDIIVFNIPH-QFLPRICSQLKGHVDSHVRAISCLKGFEVGAKGVQLLSSYITEELGI---QCGALSGANIATE 187 (391)
T ss_dssp HTT---CSEEEECSCG-GGHHHHHHHHTTTSCTTCEEEECCCSCEEETTEEECHHHHHHHHHCC---EEEEEECSCCHHH
T ss_pred Hhc---CCEEEEECCh-hhhHHHHHHhccccCCCceeEEeccccccccccchhHHHHHHHHhCc---cceeccCCchHHH
Confidence 887 9999999999 6999999999999999999999988764222 1122333222 32 234445555442
Q ss_pred ---cCC-ccCCCC----------CcchHHHHHHHHHhhCCceeeCCC-CCCCCCCHHHHHHHH--------------HHH
Q psy9637 138 ---YGP-SLMPGG----------NPAAWPALKPIFQKLNPSFETSAP-TPKPQRDKKEFLENI--------------RQA 188 (490)
Q Consensus 138 ---~G~-~im~GG----------~~~a~~~v~~ll~~l~~~~~~~g~-~g~~~g~~a~~~Kll--------------~n~ 188 (490)
.-+ .+.++. ++...+.++.+|..=--+++...+ .|. +-+-++|.+ .|+
T Consensus 188 Va~~~pta~~iA~~~~~~~~~~~~~~~a~~~~~lf~~~~frvy~s~DviGv---ElgGAlKNViAIAaGi~dGlg~G~Na 264 (391)
T 4fgw_A 188 VAQEHWSETTVAYHIPKDFRGEGKDVDHKVLKALFHRPYFHVSVIEDVAGI---SICGALKNVVALGCGFVEGLGWGNNA 264 (391)
T ss_dssp HHTTCCEEEEEECCCCTTCCCSSSSCCHHHHHHHHCBTTEEEEEESCHHHH---HHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred hhcCCCceEEEEecChhhhhhhhHHHHHHHHHHHhCCCCEEEEEeCCccce---ehHHHHHHHHHHHHHHHhcCCCCCCH
Confidence 223 333322 222345566666532112222111 110 112233433 466
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhcccchhhHhHhHhHHhhccCcccccccC--ChhHH---HH---
Q psy9637 189 LYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGGCIIRSVFLGNIKAAFDKNPALSNLLL--DPFFK---DA--- 260 (490)
Q Consensus 189 l~~~~~~~~aE~~~la~~a~~~~~~Gld~~~v~~i~~~g~~~~s~~l~~i~~~~~~~~~~~~~~~--~~~f~---~~--- 260 (490)
-.+....+++|+..++.++.. =|-++..+... | +-.+++-.+.. .+|.++...+- ...+. ..
T Consensus 265 kAALitrGl~Em~rlg~al~~---~g~~~tt~~gl----a-GlGDLi~Tc~s--SRNr~~G~~lg~~G~~~~~~~~~~~~ 334 (391)
T 4fgw_A 265 SAAIQRVGLGEIIRFGQMFFP---ESREETYYQES----A-GVADLITTCAG--GRNVKVARLMATSGKDAWECEKELLN 334 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHHST---TCCHHHHHHST----T-THHHHHHHHHS--SHHHHHHHHHHHTCCCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhc---ccCCceeecCC----C-cccceeEEecC--CccHHHHHHHHhcCCCHHHHHHHHhC
Confidence 777777788888888887610 01122111111 1 11122222221 22222221111 00010 01
Q ss_pred --HHHHHHHHHHHHHHHHHcCC--CchHHHHHHHHHH
Q psy9637 261 --IHATQSSWRAVVSQSALLGI--PTPAFATALAFYD 293 (490)
Q Consensus 261 --l~~~~kDl~~~~~~A~~~gv--~~P~~~aa~~~~~ 293 (490)
+.......+.+.+.+++.|+ .+|+++++++++.
T Consensus 335 g~v~EGv~ta~~v~~l~~~~~v~~emPI~~~vy~IL~ 371 (391)
T 4fgw_A 335 GQSAQGLITCKEVHEWLETCGSVEDFPLFEAVYQIVY 371 (391)
T ss_dssp TCCCTHHHHHHHHHHHHHHHTCSTTCHHHHHHHHHHH
T ss_pred CCEEehHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHh
Confidence 12345667888999999999 7999999999875
|
| >3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp} | Back alignment and structure |
|---|
Probab=99.18 E-value=9.8e-12 Score=124.89 Aligned_cols=119 Identities=14% Similarity=0.216 Sum_probs=95.0
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
++|||||+|.||..+|++|...|++|++|||+++..+.+ .......+++++++. +|+|++++|....++.
T Consensus 141 ~tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~-------~~~~~~~~l~ell~~---aDvV~l~lPlt~~T~~ 210 (324)
T 3hg7_A 141 RTLLILGTGSIGQHIAHTGKHFGMKVLGVSRSGRERAGF-------DQVYQLPALNKMLAQ---ADVIVSVLPATRETHH 210 (324)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCCTTC-------SEEECGGGHHHHHHT---CSEEEECCCCCSSSTT
T ss_pred ceEEEEEECHHHHHHHHHHHhCCCEEEEEcCChHHhhhh-------hcccccCCHHHHHhh---CCEEEEeCCCCHHHHH
Confidence 689999999999999999999999999999987432211 111235788999887 9999999998878887
Q ss_pred HH-HhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCCCc
Q psy9637 85 FI-DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGGE 133 (490)
Q Consensus 85 vl-~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg~ 133 (490)
++ .+.+..+++|.++||+|++...+...+.+.+.+..+......|+..+
T Consensus 211 li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~ga~lDV~~~E 260 (324)
T 3hg7_A 211 LFTASRFEHCKPGAILFNVGRGNAINEGDLLTALRTGKLGMAVLDVFEQE 260 (324)
T ss_dssp SBCTTTTTCSCTTCEEEECSCGGGBCHHHHHHHHHTTSSSEEEESCCSSS
T ss_pred HhHHHHHhcCCCCcEEEECCCchhhCHHHHHHHHHcCCceEEEeccCCCC
Confidence 77 46677899999999999999999999999998887754333344333
|
| >1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=99.18 E-value=3.9e-11 Score=120.65 Aligned_cols=110 Identities=17% Similarity=0.263 Sum_probs=90.3
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeC-ChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNR-TTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr-~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
++|||||+|.||..+|++|...|++|++||| ++++. ...+.+. ...++++++++. +|+|++++|....++
T Consensus 147 ~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~-~~~~~g~-----~~~~~l~ell~~---aDvVil~~p~~~~t~ 217 (320)
T 1gdh_A 147 KTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASSS-DEASYQA-----TFHDSLDSLLSV---SQFFSLNAPSTPETR 217 (320)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCCHH-HHHHHTC-----EECSSHHHHHHH---CSEEEECCCCCTTTT
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcChh-hhhhcCc-----EEcCCHHHHHhh---CCEEEEeccCchHHH
Confidence 5899999999999999999999999999999 87653 3333333 235589999887 999999999887777
Q ss_pred HHH-HhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccc
Q psy9637 84 DFI-DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLL 123 (490)
Q Consensus 84 ~vl-~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~ 123 (490)
.++ +..++.+++|.++||++++...+...+.+.+.+..+.
T Consensus 218 ~~i~~~~l~~mk~gailIn~arg~~vd~~aL~~aL~~g~i~ 258 (320)
T 1gdh_A 218 YFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLA 258 (320)
T ss_dssp TCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEE
T ss_pred hhcCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCCc
Confidence 777 4577889999999999998777778888888776554
|
| >4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=99.17 E-value=1e-10 Score=119.16 Aligned_cols=117 Identities=15% Similarity=0.254 Sum_probs=93.4
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
++|||||+|.||..+|+++...|++|.+||+++.. +...+.+. ...+++++++. +|+|++++|....++.
T Consensus 177 ktvGIIGlG~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~~~g~------~~~~l~ell~~---aDvV~l~~Plt~~T~~ 246 (365)
T 4hy3_A 177 SEIGIVGFGDLGKALRRVLSGFRARIRVFDPWLPR-SMLEENGV------EPASLEDVLTK---SDFIFVVAAVTSENKR 246 (365)
T ss_dssp SEEEEECCSHHHHHHHHHHTTSCCEEEEECSSSCH-HHHHHTTC------EECCHHHHHHS---CSEEEECSCSSCC---
T ss_pred CEEEEecCCcccHHHHHhhhhCCCEEEEECCCCCH-HHHhhcCe------eeCCHHHHHhc---CCEEEEcCcCCHHHHh
Confidence 58999999999999999999999999999998533 33334443 24689999987 9999999999888888
Q ss_pred HH-HhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCCC
Q psy9637 85 FI-DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGG 132 (490)
Q Consensus 85 vl-~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg 132 (490)
++ .+.+..+++|.++||++.+...+...+.+.+++..+. ....|+..
T Consensus 247 li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~-aaLDV~~~ 294 (365)
T 4hy3_A 247 FLGAEAFSSMRRGAAFILLSRADVVDFDALMAAVSSGHIV-AASDVYPE 294 (365)
T ss_dssp CCCHHHHHTSCTTCEEEECSCGGGSCHHHHHHHHHTTSSE-EEESCCSS
T ss_pred hcCHHHHhcCCCCcEEEECcCCchhCHHHHHHHHHcCCce-EEeeCCCC
Confidence 87 6777889999999999999999999999998877665 33344443
|
| >3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=2.3e-11 Score=122.83 Aligned_cols=107 Identities=17% Similarity=0.200 Sum_probs=90.1
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
++|||||+|.||..+|++|...|++|++|||++++.+ + +....+++++++. +|+|++++|....++.
T Consensus 165 ~~vgIIG~G~iG~~vA~~l~~~G~~V~~~dr~~~~~~-----g-----~~~~~~l~ell~~---aDvVil~vP~~~~t~~ 231 (333)
T 3ba1_A 165 KRVGIIGLGRIGLAVAERAEAFDCPISYFSRSKKPNT-----N-----YTYYGSVVELASN---SDILVVACPLTPETTH 231 (333)
T ss_dssp CCEEEECCSHHHHHHHHHHHTTTCCEEEECSSCCTTC-----C-----SEEESCHHHHHHT---CSEEEECSCCCGGGTT
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEECCCchhcc-----C-----ceecCCHHHHHhc---CCEEEEecCCChHHHH
Confidence 6899999999999999999999999999999876421 2 2246789998887 9999999999777777
Q ss_pred HH-HhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccc
Q psy9637 85 FI-DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLY 124 (490)
Q Consensus 85 vl-~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ 124 (490)
++ .+.++.++++.+|||++++...++..+.+.+.+.++..
T Consensus 232 li~~~~l~~mk~gailIn~srG~~vd~~aL~~aL~~g~i~g 272 (333)
T 3ba1_A 232 IINREVIDALGPKGVLINIGRGPHVDEPELVSALVEGRLGG 272 (333)
T ss_dssp CBCHHHHHHHCTTCEEEECSCGGGBCHHHHHHHHHHTSSCE
T ss_pred HhhHHHHhcCCCCCEEEECCCCchhCHHHHHHHHHcCCCeE
Confidence 77 45667788999999999999888888888888765543
|
| >4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=99.16 E-value=3.3e-11 Score=122.09 Aligned_cols=119 Identities=18% Similarity=0.309 Sum_probs=96.5
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
++|||||+|.||..+|++|...|++|.+|||++...+... +. ..+++++++++. +|+|++++|....++.
T Consensus 174 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~--g~-----~~~~~l~ell~~---sDvV~l~~Plt~~T~~ 243 (345)
T 4g2n_A 174 RRLGIFGMGRIGRAIATRARGFGLAIHYHNRTRLSHALEE--GA-----IYHDTLDSLLGA---SDIFLIAAPGRPELKG 243 (345)
T ss_dssp CEEEEESCSHHHHHHHHHHHTTTCEEEEECSSCCCHHHHT--TC-----EECSSHHHHHHT---CSEEEECSCCCGGGTT
T ss_pred CEEEEEEeChhHHHHHHHHHHCCCEEEEECCCCcchhhhc--CC-----eEeCCHHHHHhh---CCEEEEecCCCHHHHH
Confidence 5899999999999999999999999999999864433221 22 345799999987 9999999998888887
Q ss_pred HH-HhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCCCc
Q psy9637 85 FI-DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGGE 133 (490)
Q Consensus 85 vl-~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg~ 133 (490)
++ .+.++.+++|.++||++.+...+...+.+.+.+..+......|+..+
T Consensus 244 li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gA~LDVf~~E 293 (345)
T 4g2n_A 244 FLDHDRIAKIPEGAVVINISRGDLINDDALIEALRSKHLFAAGLDVFANE 293 (345)
T ss_dssp CBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTT
T ss_pred HhCHHHHhhCCCCcEEEECCCCchhCHHHHHHHHHhCCceEEEecCCCCC
Confidence 77 56778899999999999999999999999998876654333444443
|
| >2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.16 E-value=4e-11 Score=121.23 Aligned_cols=117 Identities=15% Similarity=0.233 Sum_probs=92.4
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
++|||||+|.||..+|++|...|++|++|||++++ +...+.+. . ..++++++.. +|+|++++|....++.
T Consensus 147 ~~vgIIG~G~iG~~vA~~l~~~G~~V~~~d~~~~~-~~~~~~g~-----~-~~~l~e~l~~---aDiVil~vp~~~~t~~ 216 (333)
T 2d0i_A 147 KKVGILGMGAIGKAIARRLIPFGVKLYYWSRHRKV-NVEKELKA-----R-YMDIDELLEK---SDIVILALPLTRDTYH 216 (333)
T ss_dssp CEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCH-HHHHHHTE-----E-ECCHHHHHHH---CSEEEECCCCCTTTTT
T ss_pred CEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcch-hhhhhcCc-----e-ecCHHHHHhh---CCEEEEcCCCChHHHH
Confidence 68999999999999999999999999999999876 43333332 2 3488888877 9999999999877777
Q ss_pred HHH-hhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCCC
Q psy9637 85 FID-KLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGG 132 (490)
Q Consensus 85 vl~-~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg 132 (490)
++. .+++.++++ ++||++++...+...+.+.+.+..+......+++.
T Consensus 217 ~i~~~~~~~mk~g-ilin~srg~~vd~~aL~~aL~~~~i~gaglDv~~~ 264 (333)
T 2d0i_A 217 IINEERVKKLEGK-YLVNIGRGALVDEKAVTEAIKQGKLKGYATDVFEK 264 (333)
T ss_dssp SBCHHHHHHTBTC-EEEECSCGGGBCHHHHHHHHHTTCBCEEEESCCSS
T ss_pred HhCHHHHhhCCCC-EEEECCCCcccCHHHHHHHHHcCCceEEEecCCCC
Confidence 773 566778899 99999999888888888888776554444444443
|
| >3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A | Back alignment and structure |
|---|
Probab=99.16 E-value=9.6e-12 Score=124.65 Aligned_cols=119 Identities=17% Similarity=0.271 Sum_probs=95.1
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
++|||||+|.||..+|++|...|++|++|||+++..+.+.. .....+++++++. +|+|++++|....++.
T Consensus 140 ~tvGIiG~G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~-------~~~~~~l~ell~~---aDiV~l~~Plt~~t~~ 209 (315)
T 3pp8_A 140 FSVGIMGAGVLGAKVAESLQAWGFPLRCWSRSRKSWPGVES-------YVGREELRAFLNQ---TRVLINLLPNTAQTVG 209 (315)
T ss_dssp CCEEEECCSHHHHHHHHHHHTTTCCEEEEESSCCCCTTCEE-------EESHHHHHHHHHT---CSEEEECCCCCGGGTT
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCchhhhhhhh-------hcccCCHHHHHhh---CCEEEEecCCchhhhh
Confidence 68999999999999999999999999999998764321110 1123578888877 9999999998888888
Q ss_pred HH-HhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCCCc
Q psy9637 85 FI-DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGGE 133 (490)
Q Consensus 85 vl-~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg~ 133 (490)
++ .+.++.+++|.++||++.+...+...+.+.+.+..+......|+..+
T Consensus 210 li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~gA~lDV~~~E 259 (315)
T 3pp8_A 210 IINSELLDQLPDGAYVLNLARGVHVQEADLLAALDSGKLKGAMLDVFSQE 259 (315)
T ss_dssp CBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCSSS
T ss_pred hccHHHHhhCCCCCEEEECCCChhhhHHHHHHHHHhCCccEEEcCCCCCC
Confidence 87 67788899999999999999999999999998877664333344333
|
| >1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=9.4e-11 Score=125.67 Aligned_cols=150 Identities=18% Similarity=0.201 Sum_probs=108.8
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
++|||||+|.||..+|++|...|++|++||+++.. +...+.|.. . .+++++++. +|+|++++|....+..
T Consensus 143 ~~vgIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~g~~-----~-~~l~e~~~~---aDvV~l~~P~~~~t~~ 212 (529)
T 1ygy_A 143 KTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSP-ARAAQLGIE-----L-LSLDDLLAR---ADFISVHLPKTPETAG 212 (529)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCH-HHHHHHTCE-----E-CCHHHHHHH---CSEEEECCCCSTTTTT
T ss_pred CEEEEEeeCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHHhcCcE-----E-cCHHHHHhc---CCEEEECCCCchHHHH
Confidence 68999999999999999999999999999998743 333444432 2 388898887 9999999999878888
Q ss_pred HHHh-hcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCCCcccc----ccCC-ccC---CCC-CcchHHH-
Q psy9637 85 FIDK-LVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGGEDGA----RYGP-SLM---PGG-NPAAWPA- 153 (490)
Q Consensus 85 vl~~-l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg~~~a----~~G~-~im---~GG-~~~a~~~- 153 (490)
++.. +++.+++|.+|||++++.+.+...+.+.+.+..+......++++++.+ ...+ .++ .+| +.++.++
T Consensus 213 ~i~~~~~~~~k~g~ilin~arg~iv~~~aL~~al~~g~i~ga~lDv~~~eP~~~~~L~~~~~vilTPh~~~~t~ea~~~~ 292 (529)
T 1ygy_A 213 LIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPCTDSPLFELAQVVVTPHLGASTAEAQDRA 292 (529)
T ss_dssp CBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHTSSEEEEEESSCSSSSCSCCGGGGCTTEEECSSCSSCBHHHHHHH
T ss_pred HhCHHHHhCCCCCCEEEECCCCchhhHHHHHHHHHcCCccEEEEeeccCCCCCCchHHhCCCEEEccccCCCCHHHHHHH
Confidence 8754 778899999999999998888888888887765543222344444422 2334 332 243 5566554
Q ss_pred ----HHHHHHhhCCc
Q psy9637 154 ----LKPIFQKLNPS 164 (490)
Q Consensus 154 ----v~~ll~~l~~~ 164 (490)
++.+.+.++..
T Consensus 293 ~~~~~~~l~~~l~~~ 307 (529)
T 1ygy_A 293 GTDVAESVRLALAGE 307 (529)
T ss_dssp HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHcCC
Confidence 56666666553
|
| >2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A | Back alignment and structure |
|---|
Probab=99.14 E-value=4.4e-11 Score=123.05 Aligned_cols=119 Identities=14% Similarity=0.136 Sum_probs=95.1
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
++|||||+|.||..+|++|...|++|.+|||++.+.+...+.+. ..+.+++++++. +|+|++++|....++.
T Consensus 192 ktvGIIGlG~IG~~vA~~l~a~G~~V~~~d~~~~~~~~~~~~G~-----~~~~~l~ell~~---aDvV~l~~Plt~~t~~ 263 (393)
T 2nac_A 192 MHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKELNL-----TWHATREDMYPV---CDVVTLNCPLHPETEH 263 (393)
T ss_dssp CEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCCHHHHHHHTC-----EECSSHHHHGGG---CSEEEECSCCCTTTTT
T ss_pred CEEEEEeECHHHHHHHHHHHhCCCEEEEEcCCccchhhHhhcCc-----eecCCHHHHHhc---CCEEEEecCCchHHHH
Confidence 68999999999999999999999999999998655444444343 234688998887 9999999998877877
Q ss_pred HH-HhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCC
Q psy9637 85 FI-DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSG 131 (490)
Q Consensus 85 vl-~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsG 131 (490)
++ ++.++.+++|.++||++++...+...+.+.+.+..+.....-|+.
T Consensus 264 li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gA~lDV~~ 311 (393)
T 2nac_A 264 MINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWF 311 (393)
T ss_dssp CBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHTTSEEEEEESCCS
T ss_pred HhhHHHHhhCCCCCEEEECCCchHhhHHHHHHHHHcCCeeEEEEEecC
Confidence 77 567788999999999999988888888888887655443333443
|
| >2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A | Back alignment and structure |
|---|
Probab=99.12 E-value=6.1e-11 Score=121.20 Aligned_cols=112 Identities=18% Similarity=0.205 Sum_probs=94.0
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCe-EEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFT-VVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~-V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
++|||||+|.||..+|++|...|++ |++|||++.+.+...+.+. ..+.+++++++. +|+|++++|....++
T Consensus 165 ~tvgIIG~G~IG~~vA~~l~~~G~~~V~~~d~~~~~~~~~~~~g~-----~~~~~l~ell~~---aDvV~l~~P~t~~t~ 236 (364)
T 2j6i_A 165 KTIATIGAGRIGYRVLERLVPFNPKELLYYDYQALPKDAEEKVGA-----RRVENIEELVAQ---ADIVTVNAPLHAGTK 236 (364)
T ss_dssp CEEEEECCSHHHHHHHHHHGGGCCSEEEEECSSCCCHHHHHHTTE-----EECSSHHHHHHT---CSEEEECCCCSTTTT
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCcEEEEECCCccchhHHHhcCc-----EecCCHHHHHhc---CCEEEECCCCChHHH
Confidence 5899999999999999999999997 9999998765554444443 245689999887 999999999987787
Q ss_pred HHH-HhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccc
Q psy9637 84 DFI-DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLY 124 (490)
Q Consensus 84 ~vl-~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ 124 (490)
.++ +..++.+++|.++||++++...+...+.+.+.+.++..
T Consensus 237 ~li~~~~l~~mk~ga~lIn~arG~~vd~~aL~~aL~~g~i~g 278 (364)
T 2j6i_A 237 GLINKELLSKFKKGAWLVNTARGAICVAEDVAAALESGQLRG 278 (364)
T ss_dssp TCBCHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEE
T ss_pred HHhCHHHHhhCCCCCEEEECCCCchhCHHHHHHHHHcCCCcE
Confidence 777 56778899999999999998888888999998876653
|
| >2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=7.5e-11 Score=119.35 Aligned_cols=118 Identities=20% Similarity=0.292 Sum_probs=96.0
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
++|||||+|.||..+|++|...|++|++|||+++. . .+.+ + ...+++++++. +|+|++++|....++.
T Consensus 149 ktvgIiGlG~IG~~vA~~l~~~G~~V~~~d~~~~~--~-~~~~-----~-~~~~l~ell~~---aDvV~l~~Plt~~t~~ 216 (343)
T 2yq5_A 149 LTVGLIGVGHIGSAVAEIFSAMGAKVIAYDVAYNP--E-FEPF-----L-TYTDFDTVLKE---ADIVSLHTPLFPSTEN 216 (343)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCG--G-GTTT-----C-EECCHHHHHHH---CSEEEECCCCCTTTTT
T ss_pred CeEEEEecCHHHHHHHHHHhhCCCEEEEECCChhh--h-hhcc-----c-cccCHHHHHhc---CCEEEEcCCCCHHHHH
Confidence 58999999999999999999999999999998754 1 1111 1 23489999988 9999999998777777
Q ss_pred HH-HhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCCCcc
Q psy9637 85 FI-DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGGED 134 (490)
Q Consensus 85 vl-~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg~~ 134 (490)
++ .+.+..+++|.++||++.+...+...+.+.+.+..+.....-|+..++
T Consensus 217 li~~~~l~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gA~LDV~~~EP 267 (343)
T 2yq5_A 217 MIGEKQLKEMKKSAYLINCARGELVDTGALIKALQDGEIAGAGLDTLAGES 267 (343)
T ss_dssp CBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSCEEESCCTTGG
T ss_pred HhhHHHHhhCCCCcEEEECCCChhhhHHHHHHHHHcCCCcEEEecccccCC
Confidence 66 566778999999999999999999999999988877655455555544
|
| >1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=99.11 E-value=6.4e-11 Score=118.11 Aligned_cols=105 Identities=17% Similarity=0.294 Sum_probs=88.9
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
++|||||+|.||..+|++|...|++|.+|||+++ +. +. ....+++++++. +|+|++++|....++.
T Consensus 125 ~~vgIIG~G~IG~~~A~~l~~~G~~V~~~dr~~~--~~----~~-----~~~~~l~ell~~---aDvV~l~~P~~~~t~~ 190 (303)
T 1qp8_A 125 EKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPK--EG----PW-----RFTNSLEEALRE---ARAAVCALPLNKHTRG 190 (303)
T ss_dssp CEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCC--CS----SS-----CCBSCSHHHHTT---CSEEEECCCCSTTTTT
T ss_pred CEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcc--cc----Cc-----ccCCCHHHHHhh---CCEEEEeCcCchHHHH
Confidence 6899999999999999999999999999999876 11 21 235688888887 9999999999877887
Q ss_pred HH-HhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccc
Q psy9637 85 FI-DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLL 123 (490)
Q Consensus 85 vl-~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~ 123 (490)
++ .+.++.+++|.++||+|++...+...+.+.+.+..+.
T Consensus 191 ~i~~~~l~~mk~gailin~srg~~vd~~aL~~aL~~g~i~ 230 (303)
T 1qp8_A 191 LVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQF 230 (303)
T ss_dssp CBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHHHCTTC
T ss_pred HhCHHHHhhCCCCCEEEECCCCcccCHHHHHHHHHhCCce
Confidence 77 4677889999999999999888888888888776553
|
| >3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=99.10 E-value=8.2e-11 Score=120.23 Aligned_cols=117 Identities=21% Similarity=0.265 Sum_probs=95.6
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCch---
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSA--- 81 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~--- 81 (490)
++|||||+|.||..+|++|...|++|.+||++.+... .+ ....+++++++. +|+|++++|....
T Consensus 120 ktvGIIGlG~IG~~vA~~l~a~G~~V~~~d~~~~~~~----~~------~~~~sl~ell~~---aDiV~l~~Plt~~g~~ 186 (381)
T 3oet_A 120 RTIGIVGVGNVGSRLQTRLEALGIRTLLCDPPRAARG----DE------GDFRTLDELVQE---ADVLTFHTPLYKDGPY 186 (381)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECHHHHHTT----CC------SCBCCHHHHHHH---CSEEEECCCCCCSSTT
T ss_pred CEEEEEeECHHHHHHHHHHHHCCCEEEEECCChHHhc----cC------cccCCHHHHHhh---CCEEEEcCcCCccccc
Confidence 5899999999999999999999999999998643221 11 136799999988 9999999998776
Q ss_pred -HHHHH-HhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCCCcc
Q psy9637 82 -VDDFI-DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGGED 134 (490)
Q Consensus 82 -v~~vl-~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg~~ 134 (490)
++.++ .+.+..+++|.++||++.+...+...+.+.+++.++......|+..++
T Consensus 187 ~T~~li~~~~l~~mk~gailIN~aRG~vvde~aL~~aL~~g~i~gA~LDV~e~EP 241 (381)
T 3oet_A 187 KTLHLADETLIRRLKPGAILINACRGPVVDNAALLARLNAGQPLSVVLDVWEGEP 241 (381)
T ss_dssp CCTTSBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTCCEEEEESCCTTTT
T ss_pred cchhhcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCCeEEEeeccccCC
Confidence 77666 566778999999999999999999999999988877665555555443
|
| >2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.08 E-value=9.4e-11 Score=117.37 Aligned_cols=103 Identities=23% Similarity=0.322 Sum_probs=86.9
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
++|||||+|.||..+|++|...|++|++|||++++.+ . ...+++++++. +|+|++++|....++.
T Consensus 145 ~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~------~------~~~~l~ell~~---aDvV~l~~p~~~~t~~ 209 (311)
T 2cuk_A 145 LTLGLVGMGRIGQAVAKRALAFGMRVVYHARTPKPLP------Y------PFLSLEELLKE---ADVVSLHTPLTPETHR 209 (311)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSSS------S------CBCCHHHHHHH---CSEEEECCCCCTTTTT
T ss_pred CEEEEEEECHHHHHHHHHHHHCCCEEEEECCCCcccc------c------ccCCHHHHHhh---CCEEEEeCCCChHHHh
Confidence 5899999999999999999999999999999876432 1 25688998887 9999999999877777
Q ss_pred HH-HhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccc
Q psy9637 85 FI-DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLL 123 (490)
Q Consensus 85 vl-~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~ 123 (490)
++ .+.++.+++|.++||++++...+...+.+.+. ..+.
T Consensus 210 li~~~~l~~mk~ga~lin~srg~~vd~~aL~~aL~-g~i~ 248 (311)
T 2cuk_A 210 LLNRERLFAMKRGAILLNTARGALVDTEALVEALR-GHLF 248 (311)
T ss_dssp CBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHT-TTSS
T ss_pred hcCHHHHhhCCCCcEEEECCCCCccCHHHHHHHHh-CcCC
Confidence 77 35677899999999999988888878888887 5543
|
| >1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=2.9e-10 Score=114.87 Aligned_cols=116 Identities=19% Similarity=0.275 Sum_probs=93.9
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
++|||||+|.||..+|++|...|++|++|||++++. +. ... ...++++++++. +|+|++++|....++.
T Consensus 147 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~--~~-~~~-----~~~~~l~ell~~---aDvV~l~~p~~~~t~~ 215 (333)
T 1j4a_A 147 QVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPE--LE-KKG-----YYVDSLDDLYKQ---ADVISLHVPDVPANVH 215 (333)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHH--HH-HTT-----CBCSCHHHHHHH---CSEEEECSCCCGGGTT
T ss_pred CEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcchh--HH-hhC-----eecCCHHHHHhh---CCEEEEcCCCcHHHHH
Confidence 589999999999999999999999999999998754 22 222 234589999887 9999999999877777
Q ss_pred HH-HhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCC
Q psy9637 85 FI-DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSG 131 (490)
Q Consensus 85 vl-~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsG 131 (490)
++ +..++.+++|.++||++++...+...+.+.+++.++.....-|+.
T Consensus 216 li~~~~l~~mk~ga~lIn~arg~~vd~~aL~~aL~~g~i~gA~LDV~~ 263 (333)
T 1j4a_A 216 MINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYE 263 (333)
T ss_dssp CBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCT
T ss_pred HHhHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCceEEEEecCC
Confidence 77 456678899999999999998899999999988776543333333
|
| >2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.04 E-value=2.5e-10 Score=116.85 Aligned_cols=107 Identities=15% Similarity=0.257 Sum_probs=89.2
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCch---
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSA--- 81 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~--- 81 (490)
++|||||+|.||..+|++|...|++|.+||++++.. ..+. ...+++++++. +|+|++++|....
T Consensus 117 ~tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~----~~g~------~~~~l~ell~~---aDvV~l~~Plt~~g~~ 183 (380)
T 2o4c_A 117 RTYGVVGAGQVGGRLVEVLRGLGWKVLVCDPPRQAR----EPDG------EFVSLERLLAE---ADVISLHTPLNRDGEH 183 (380)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECHHHHHH----STTS------CCCCHHHHHHH---CSEEEECCCCCSSSSS
T ss_pred CEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCChhhh----ccCc------ccCCHHHHHHh---CCEEEEeccCcccccc
Confidence 589999999999999999999999999999876532 1221 25689999987 9999999999876
Q ss_pred -HHHHH-HhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccc
Q psy9637 82 -VDDFI-DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLY 124 (490)
Q Consensus 82 -v~~vl-~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ 124 (490)
+..++ .+.++.+++|.++||++++...+...+.+.+.+.++..
T Consensus 184 ~T~~li~~~~l~~mk~gailIN~sRG~vvd~~aL~~aL~~g~i~~ 228 (380)
T 2o4c_A 184 PTRHLLDEPRLAALRPGTWLVNASRGAVVDNQALRRLLEGGADLE 228 (380)
T ss_dssp CCTTSBCHHHHHTSCTTEEEEECSCGGGBCHHHHHHHHHTTCCEE
T ss_pred chhhhcCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCCce
Confidence 77666 56778899999999999998888888888888776543
|
| >3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=99.03 E-value=4.4e-10 Score=116.12 Aligned_cols=117 Identities=22% Similarity=0.294 Sum_probs=91.0
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
++|||||+|.||..+|+++...|++|.+||+++... . .......+++++++. +|+|++++|....++.
T Consensus 157 ktvGIIGlG~IG~~vA~~l~~~G~~V~~yd~~~~~~-----~----~~~~~~~sl~ell~~---aDvV~lhvPlt~~T~~ 224 (416)
T 3k5p_A 157 KTLGIVGYGNIGSQVGNLAESLGMTVRYYDTSDKLQ-----Y----GNVKPAASLDELLKT---SDVVSLHVPSSKSTSK 224 (416)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCCCC-----B----TTBEECSSHHHHHHH---CSEEEECCCC-----C
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEECCcchhc-----c----cCcEecCCHHHHHhh---CCEEEEeCCCCHHHhh
Confidence 589999999999999999999999999999974311 0 112346799999988 9999999999877877
Q ss_pred HH-HhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCCCc
Q psy9637 85 FI-DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGGE 133 (490)
Q Consensus 85 vl-~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg~ 133 (490)
++ .+.+..+++|.++||++.+...+...+.+.+++..+......|+..+
T Consensus 225 li~~~~l~~mk~gailIN~aRG~vvd~~aL~~aL~~g~i~gAalDVf~~E 274 (416)
T 3k5p_A 225 LITEAKLRKMKKGAFLINNARGSDVDLEALAKVLQEGHLAGAAIDVFPVE 274 (416)
T ss_dssp CBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTTSEEEEEECCCSSC
T ss_pred hcCHHHHhhCCCCcEEEECCCChhhhHHHHHHHHHcCCccEEEeCCCCCC
Confidence 77 56777899999999999999999999999998876654444444443
|
| >1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=2.6e-10 Score=118.00 Aligned_cols=107 Identities=21% Similarity=0.326 Sum_probs=90.4
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
++|||||+|.||..+|+++...|++|++|||++... .+ .+..+.+++++++. +|+|++++|....++.
T Consensus 146 ktlGiIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~-----~~----~~~~~~~l~ell~~---aDvV~l~~P~t~~t~~ 213 (404)
T 1sc6_A 146 KKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLP-----LG----NATQVQHLSDLLNM---SDVVSLHVPENPSTKN 213 (404)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCC-----CT----TCEECSCHHHHHHH---CSEEEECCCSSTTTTT
T ss_pred CEEEEEeECHHHHHHHHHHHHCCCEEEEEcCCchhc-----cC----CceecCCHHHHHhc---CCEEEEccCCChHHHH
Confidence 589999999999999999999999999999976421 11 12346789999988 9999999999888887
Q ss_pred HH-HhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccc
Q psy9637 85 FI-DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLL 123 (490)
Q Consensus 85 vl-~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~ 123 (490)
++ ++.+..+++|.++||++++...+...+.+.+++..+.
T Consensus 214 li~~~~l~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g~i~ 253 (404)
T 1sc6_A 214 MMGAKEISLMKPGSLLINASRGTVVDIPALADALASKHLA 253 (404)
T ss_dssp CBCHHHHHHSCTTEEEEECSCSSSBCHHHHHHHHHTTSEE
T ss_pred HhhHHHHhhcCCCeEEEECCCChHHhHHHHHHHHHcCCcc
Confidence 77 5677889999999999999988988888888876554
|
| >3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I* | Back alignment and structure |
|---|
Probab=99.02 E-value=1.1e-09 Score=114.06 Aligned_cols=152 Identities=18% Similarity=0.125 Sum_probs=99.2
Q ss_pred CcEEEEcccHHHHHHHHHHHHC------CCeEEEEeCChH-HHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecC
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDH------GFTVVAYNRTTA-KVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVK 77 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~------G~~V~v~dr~~~-~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp 77 (490)
++|||||+|.||.+||++|.++ |++|++.+++.+ ..+...+.|.... -..+.++.++++. +|+||++||
T Consensus 55 KkIgIIGlGsMG~AmA~nLr~s~~~~g~G~~ViVg~r~~sks~e~A~e~G~~v~-d~ta~s~aEAa~~---ADVVILaVP 130 (525)
T 3fr7_A 55 KQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKIGLRKGSKSFDEARAAGFTEE-SGTLGDIWETVSG---SDLVLLLIS 130 (525)
T ss_dssp SEEEEECCTTHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCTT-TTCEEEHHHHHHH---CSEEEECSC
T ss_pred CEEEEEeEhHHHHHHHHHHHhcccccCCCCEEEEEeCCchhhHHHHHHCCCEEe-cCCCCCHHHHHhc---CCEEEECCC
Confidence 6899999999999999999999 999987776543 3444445554200 0013688999988 999999999
Q ss_pred CCchHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHH---HHHcccccc-ccCCCCCcc-------c---cccCC-cc
Q psy9637 78 AGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKA---LEAKGLLYV-GCGVSGGED-------G---ARYGP-SL 142 (490)
Q Consensus 78 ~~~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~---l~~~gi~~l-d~~vsGg~~-------~---a~~G~-~i 142 (490)
+. ...+++.++.+.+++|.+|+.+... +....+. ....++.++ -+|-.-|.. + ...|. ++
T Consensus 131 ~~-~~~eVl~eI~p~LK~GaILs~AaGf----~I~~le~~~i~~p~dv~VVrVmPNtPg~~VR~~y~~G~~~~g~Gv~~l 205 (525)
T 3fr7_A 131 DA-AQADNYEKIFSHMKPNSILGLSHGF----LLGHLQSAGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSS 205 (525)
T ss_dssp HH-HHHHHHHHHHHHSCTTCEEEESSSH----HHHHHHHTTCCCCTTSEEEEEEESSCHHHHHHHHHHHTTSTTCSCCEE
T ss_pred hH-HHHHHHHHHHHhcCCCCeEEEeCCC----CHHHHhhhcccCCCCCcEEEEecCCCchhHHHHHhcccccccCCccEE
Confidence 95 5567888999999999998776542 2221111 111233332 234332222 1 01333 23
Q ss_pred C-CCCC--cchHHHHHHHHHhhCCce
Q psy9637 143 M-PGGN--PAAWPALKPIFQKLNPSF 165 (490)
Q Consensus 143 m-~GG~--~~a~~~v~~ll~~l~~~~ 165 (490)
+ +..+ .++.+.+..++..+|...
T Consensus 206 iAv~qd~tgea~e~alala~aiG~~~ 231 (525)
T 3fr7_A 206 FAVHQDVDGRATDVALGWSVALGSPF 231 (525)
T ss_dssp EEEEECSSSCHHHHHHHHHHHTTCSE
T ss_pred EEcCCCCCHHHHHHHHHHHHHCCCCe
Confidence 2 3233 378999999999999854
|
| >1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=98.99 E-value=3e-10 Score=114.75 Aligned_cols=108 Identities=23% Similarity=0.292 Sum_probs=90.4
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
++|||||+|.||..+|++|...|++|++|||++++. + +.. + ...+++++++. +|+|++++|....++.
T Consensus 146 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~--~-~~~-----~-~~~~l~ell~~---aDvV~~~~P~~~~t~~ 213 (333)
T 1dxy_A 146 QTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMKG--D-HPD-----F-DYVSLEDLFKQ---SDVIDLHVPGIEQNTH 213 (333)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSS--C-CTT-----C-EECCHHHHHHH---CSEEEECCCCCGGGTT
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCcchh--h-Hhc-----c-ccCCHHHHHhc---CCEEEEcCCCchhHHH
Confidence 589999999999999999999999999999987542 1 111 1 24589999887 9999999999887877
Q ss_pred HH-HhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccc
Q psy9637 85 FI-DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLY 124 (490)
Q Consensus 85 vl-~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ 124 (490)
++ .+.++.+++|.++||+|++...+...+.+.+.+.++..
T Consensus 214 li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~g~i~g 254 (333)
T 1dxy_A 214 IINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAG 254 (333)
T ss_dssp SBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTTSEEE
T ss_pred HhCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCccE
Confidence 77 56778899999999999999899999999888876653
|
| >1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans} | Back alignment and structure |
|---|
Probab=98.99 E-value=3e-10 Score=114.72 Aligned_cols=116 Identities=19% Similarity=0.288 Sum_probs=93.2
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
++|||||+|.||..+|++|...|++|++|||++++. + +.. + ...+++++++. +|+|++++|....++.
T Consensus 147 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~--~-~~~-----~-~~~~l~ell~~---aDvV~~~~p~t~~t~~ 214 (331)
T 1xdw_A 147 CTVGVVGLGRIGRVAAQIFHGMGATVIGEDVFEIKG--I-EDY-----C-TQVSLDEVLEK---SDIITIHAPYIKENGA 214 (331)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCS--C-TTT-----C-EECCHHHHHHH---CSEEEECCCCCTTTCC
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCccHH--H-Hhc-----c-ccCCHHHHHhh---CCEEEEecCCchHHHH
Confidence 589999999999999999999999999999987542 1 111 1 24589998887 9999999999877777
Q ss_pred HH-HhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCCC
Q psy9637 85 FI-DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGG 132 (490)
Q Consensus 85 vl-~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg 132 (490)
++ .+.++.+++|.++||+|++...+...+.+.+.+.++.....-|+..
T Consensus 215 li~~~~l~~mk~ga~lin~srg~~vd~~aL~~aL~~g~i~gA~LDV~~~ 263 (331)
T 1xdw_A 215 VVTRDFLKKMKDGAILVNCARGQLVDTEAVIEAVESGKLGGYGCDVLDG 263 (331)
T ss_dssp SBCHHHHHTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTT
T ss_pred HhCHHHHhhCCCCcEEEECCCcccccHHHHHHHHHhCCceEEEEecCCC
Confidence 66 5667789999999999999988999999999887765433334433
|
| >3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=4.4e-10 Score=111.92 Aligned_cols=105 Identities=16% Similarity=0.124 Sum_probs=78.1
Q ss_pred ceeecCCCCcchhHHhhhhHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhccCcchhHHHHHHHHHhcc-------c
Q psy9637 349 CDWVGEQGAGHFVKMVHNGIEYGDMQLICEAYHLMTGALGMSHDEMSAVFEDWNKGELDSFLIEITKDILKF-------K 421 (490)
Q Consensus 349 ~~~~g~~g~gh~vkmvhngiey~~m~~~~E~~~~~~~~~~~~~~~~~~~~~~w~~g~~~s~l~~~~~~~~~~-------~ 421 (490)
+.|+|+.|+||++|||||.|.|++|++++|++.|+++ .|+ |..++++.|+.++.+||.++........ .
T Consensus 160 i~~~G~~G~g~~~Kl~~N~l~~~~~~a~aEa~~la~~-~Gl---d~~~~~~vl~~~~~~s~~~~~~~p~~~~~~~~~~~~ 235 (300)
T 3obb_A 160 IFHAGPDGAGQVAKVCNNQLLAVLMIGTAEAMALGVA-NGL---EAKVLAEIMRRSSGGNWALEVYNPWPGVMENAPASR 235 (300)
T ss_dssp EEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTC---CHHHHHHHHHTSTTCCHHHHHCCCSTTTSTTSGGGG
T ss_pred EEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCC---CHHHHHHHHHhCcccchHHHhhccccchhhhccccc
Confidence 5589999999999999999999999999999999998 888 6788888899998889988754321110 1
Q ss_pred CCCCCcchhhhccccCCCcchHHHHHHHHhcCCCchhhHHHH
Q psy9637 422 DTDGAPLVEKIKDYAGQKGTGKWTAISALDYGVPVTLIGESV 463 (490)
Q Consensus 422 ~~~~~~~l~~i~~~~~~~g~g~w~~~~a~~~~~p~~~i~~a~ 463 (490)
|.+....++.... .-+...+.|.+.++|+|+...+.
T Consensus 236 ~~~~~f~~~l~~K------Dl~l~~~~A~~~g~~~p~~~~a~ 271 (300)
T 3obb_A 236 DYSGGFMAQLMAK------DLGLAQEAAQASASSTPMGSLAL 271 (300)
T ss_dssp TTCSSSBHHHHHH------HHHHHHHHHHHHTCCCHHHHHHH
T ss_pred cCCccchHHHHHH------HHHHHHHHHHHcCCCChHHHHHH
Confidence 1111112222211 23467889999999999877764
|
| >1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8 | Back alignment and structure |
|---|
Probab=98.96 E-value=6.4e-10 Score=98.00 Aligned_cols=104 Identities=19% Similarity=0.267 Sum_probs=82.0
Q ss_pred CCcEEEEcc----cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCC
Q psy9637 4 KGDIGLIGL----AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAG 79 (490)
Q Consensus 4 ~~~IgiIGl----G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~ 79 (490)
..+|+|||+ |.||..++++|.+.||+|+.+|++.+.+ .| +..+.|++|+.+. +|++++++|+
T Consensus 14 p~~IavIGaS~~~g~~G~~~~~~L~~~G~~V~~vnp~~~~i-----~G-----~~~~~s~~el~~~---vDlvii~vp~- 79 (138)
T 1y81_A 14 FRKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEI-----EG-----LKCYRSVRELPKD---VDVIVFVVPP- 79 (138)
T ss_dssp CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEE-----TT-----EECBSSGGGSCTT---CCEEEECSCH-
T ss_pred CCeEEEEeecCCCCCHHHHHHHHHHHCCCEEEEeCCCCCeE-----CC-----eeecCCHHHhCCC---CCEEEEEeCH-
Confidence 358999999 9999999999999999976666653211 12 3467899988776 8999999996
Q ss_pred chHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccc
Q psy9637 80 SAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVG 126 (490)
Q Consensus 80 ~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld 126 (490)
+.+.++++++.. +..+.++++.++. .++..+.++++|+++++
T Consensus 80 ~~v~~v~~~~~~-~g~~~i~~~~~~~----~~~l~~~a~~~Gi~~ig 121 (138)
T 1y81_A 80 KVGLQVAKEAVE-AGFKKLWFQPGAE----SEEIRRFLEKAGVEYSF 121 (138)
T ss_dssp HHHHHHHHHHHH-TTCCEEEECTTSC----CHHHHHHHHHHTCEEEC
T ss_pred HHHHHHHHHHHH-cCCCEEEEcCccH----HHHHHHHHHHCCCEEEc
Confidence 688999988776 4556788888774 45666777888999987
|
| >4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=98.94 E-value=1.8e-09 Score=107.38 Aligned_cols=103 Identities=13% Similarity=0.124 Sum_probs=79.0
Q ss_pred eeec-CCCCcchhHHhhhhHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhccCcchhHHHHHHHHHhcccCCC--CC
Q psy9637 350 DWVG-EQGAGHFVKMVHNGIEYGDMQLICEAYHLMTGALGMSHDEMSAVFEDWNKGELDSFLIEITKDILKFKDTD--GA 426 (490)
Q Consensus 350 ~~~g-~~g~gh~vkmvhngiey~~m~~~~E~~~~~~~~~~~~~~~~~~~~~~w~~g~~~s~l~~~~~~~~~~~~~~--~~ 426 (490)
.|+| +.|+||++|||||.+.|++|++++|++.++++ .|+ |..++++.|+.++.+||.++.-.......|-+ |.
T Consensus 161 ~~~g~~~G~g~~~Kl~~N~~~~~~~~~~aEa~~la~~-~Gl---d~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~p~~f 236 (297)
T 4gbj_A 161 FDFGDDPGAANVIKLAGNFMIACSLEMMGEAFTMAEK-NGI---SRQSIYEMLTSTLFAAPIFQNYGKLVASNTYEPVAF 236 (297)
T ss_dssp EECCSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTC---CHHHHHHHHHTTTTCSHHHHHHHHHHHHTCCCSCSS
T ss_pred EEecCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCC---CHHHHHHHHHhhcccCchhhccCccccCCCCCCccc
Confidence 4677 57999999999999999999999999999997 898 67888999999999999998776655433321 21
Q ss_pred cchhhhccccCCCcchHHHHHHHHhcCCCchhhHHHH
Q psy9637 427 PLVEKIKDYAGQKGTGKWTAISALDYGVPVTLIGESV 463 (490)
Q Consensus 427 ~~l~~i~~~~~~~g~g~w~~~~a~~~~~p~~~i~~a~ 463 (490)
.++.... .-+-..+.|.+.++|+|+...+.
T Consensus 237 -~~~l~~K------Dl~l~~~~A~~~g~~~p~~~~~~ 266 (297)
T 4gbj_A 237 -RFPLGLK------DINLTLQTASDVNAPMPFADIIR 266 (297)
T ss_dssp -BHHHHHH------HHHHHHHHHHHTTCCCHHHHHHH
T ss_pred -hhHHHHH------HHHHHHHHHHHhCCCChHHHHHH
Confidence 2332221 12357788999999999776553
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.93 E-value=1.3e-09 Score=108.46 Aligned_cols=137 Identities=14% Similarity=0.135 Sum_probs=95.4
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
++|+|||+|.||..+++.|...|++|++|||++++.+.+.+.+.. .....++.++++. +|+|++++|.....+
T Consensus 158 ~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~~~~~~~~~~g~~---~~~~~~l~~~l~~---aDvVi~~~p~~~i~~- 230 (300)
T 2rir_A 158 SQVAVLGLGRTGMTIARTFAALGANVKVGARSSAHLARITEMGLV---PFHTDELKEHVKD---IDICINTIPSMILNQ- 230 (300)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCE---EEEGGGHHHHSTT---CSEEEECCSSCCBCH-
T ss_pred CEEEEEcccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCe---EEchhhHHHHhhC---CCEEEECCChhhhCH-
Confidence 689999999999999999999999999999999887766554321 1113466666555 999999999853222
Q ss_pred HHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccC-CCCCccccccCCccCCCCCcchHHHHHHHHHhhC
Q psy9637 85 FIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCG-VSGGEDGARYGPSLMPGGNPAAWPALKPIFQKLN 162 (490)
Q Consensus 85 vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~-vsGg~~~a~~G~~im~GG~~~a~~~v~~ll~~l~ 162 (490)
..+..++++.++||++........ +.....|+.++++| +.|....+..+.. .++.+.+++..++
T Consensus 231 ---~~~~~mk~g~~lin~a~g~~~~~~---~~a~~~G~~~i~~pg~~g~v~~a~a~~l--------~~~~~~~~l~~~~ 295 (300)
T 2rir_A 231 ---TVLSSMTPKTLILDLASRPGGTDF---KYAEKQGIKALLAPGLPGIVAPKTAGQI--------LANVLSKLLAEIQ 295 (300)
T ss_dssp ---HHHTTSCTTCEEEECSSTTCSBCH---HHHHHHTCEEEECCCHHHHHCHHHHHHH--------HHHHHHHHHHHHH
T ss_pred ---HHHHhCCCCCEEEEEeCCCCCcCH---HHHHHCCCEEEECCCCCCcHHHHHHHHH--------HHHHHHHHHHHhc
Confidence 244568899999999975322212 44566799999988 6665544433331 2355556665543
|
| >2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=1.4e-09 Score=105.99 Aligned_cols=109 Identities=18% Similarity=0.184 Sum_probs=82.3
Q ss_pred cEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCch--HH
Q psy9637 6 DIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSA--VD 83 (490)
Q Consensus 6 ~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~--v~ 83 (490)
+|+|||+|.||.+++..|.+.|++|++|||++++.+.+.+.... . .+++.++ .. +|+|++++|.+.. +.
T Consensus 118 ~v~iiG~G~~g~~~a~~l~~~g~~v~v~~r~~~~~~~l~~~~~~----~-~~~~~~~-~~---~Divi~~tp~~~~~~~~ 188 (263)
T 2d5c_A 118 PALVLGAGGAGRAVAFALREAGLEVWVWNRTPQRALALAEEFGL----R-AVPLEKA-RE---ARLLVNATRVGLEDPSA 188 (263)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHTC----E-ECCGGGG-GG---CSEEEECSSTTTTCTTC
T ss_pred eEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcc----c-hhhHhhc-cC---CCEEEEccCCCCCCCCC
Confidence 79999999999999999999999999999999988887754221 1 4567766 65 9999999998731 11
Q ss_pred HHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccccccc
Q psy9637 84 DFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGC 127 (490)
Q Consensus 84 ~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~ 127 (490)
.++. .+.+++|.+|+|++.. |..+ +..+.++++|+.+++.
T Consensus 189 ~~l~--~~~l~~g~~viD~~~~-p~~t-~l~~~a~~~g~~~v~g 228 (263)
T 2d5c_A 189 SPLP--AELFPEEGAAVDLVYR-PLWT-RFLREAKAKGLKVQTG 228 (263)
T ss_dssp CSSC--GGGSCSSSEEEESCCS-SSSC-HHHHHHHHTTCEEECS
T ss_pred CCCC--HHHcCCCCEEEEeecC-Cccc-HHHHHHHHCcCEEECc
Confidence 2221 3567889999999986 4444 4556667778776643
|
| >3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=2.5e-08 Score=110.38 Aligned_cols=191 Identities=15% Similarity=0.164 Sum_probs=124.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHc-----------cc------CCCCeeccCCHHHHHhhC
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLAN-----------EA------KGTNIIGAHSLEELVKNL 66 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~-----------g~------~~~~i~~~~s~~e~v~~l 66 (490)
..+|||||.|.||..+|..++.+|++|+++|++++.++...+. +. ...++...++.+++.
T Consensus 316 i~~v~ViGaG~MG~gIA~~~a~aG~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--- 392 (742)
T 3zwc_A 316 VSSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSSTKELS--- 392 (742)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEEEESCGGGGG---
T ss_pred ccEEEEEcccHHHHHHHHHHHhCCCchhcccchHhhhhhHHHHHHHHHHHHHHhccccchhhhhhhhcccCcHHHHh---
Confidence 3689999999999999999999999999999999876543221 00 013455667766643
Q ss_pred CCCcEEEEecCCCchHH-HHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHH--ccccccccCCCCCccccccCCccC
Q psy9637 67 KKPRRVMMLVKAGSAVD-DFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEA--KGLLYVGCGVSGGEDGARYGPSLM 143 (490)
Q Consensus 67 ~~~dvIil~vp~~~~v~-~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~--~gi~~ld~~vsGg~~~a~~G~~im 143 (490)
.+|+||-+||..-.++ +++.++.+.++++.|+...+++.+.+.....-.-.+ -|.||...+-.-.-- =++
T Consensus 393 -~aDlVIEAV~E~l~iK~~vf~~le~~~~~~aIlASNTSsl~i~~ia~~~~~p~r~ig~HFfnP~~~m~LV------Evi 465 (742)
T 3zwc_A 393 -TVDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSALNVDDIASSTDRPQLVIGTHFFSPAHVMRLL------EVI 465 (742)
T ss_dssp -SCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHHTTSSCGGGEEEEECCSSTTTCCEE------EEE
T ss_pred -hCCEEEEeccccHHHHHHHHHHHhhcCCCCceEEecCCcCChHHHHhhcCCccccccccccCCCCCCceE------EEe
Confidence 3899999999988877 566888888989888877666665443322111111 166776543110000 122
Q ss_pred CC--CCcchHHHHHHHHHhhCCceeeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q psy9637 144 PG--GNPAAWPALKPIFQKLNPSFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIA 221 (490)
Q Consensus 144 ~G--G~~~a~~~v~~ll~~l~~~~~~~g~~g~~~g~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~~~v~ 221 (490)
.| -++++++.+..+.+.++...+.+.+.. | ..++- .....+.|++.+.+. |.++.++-
T Consensus 466 ~g~~Ts~e~~~~~~~~~~~lgK~pV~vkd~p---G---Fi~NR-------i~~~~~~ea~~l~~e-------G~~~~~id 525 (742)
T 3zwc_A 466 PSRYSSPTTIATVMSLSKKIGKIGVVVGNCY---G---FVGNR-------MLAPYYNQGFFLLEE-------GSKPEDVD 525 (742)
T ss_dssp ECSSCCHHHHHHHHHHHHHTTCEEEECCCST---T---TTHHH-------HHHHHHHHHHHHHHT-------TCCHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCCcccCCCC---C---ccHHH-------HhhHHHHHHHHHHHc-------CCCHHHHH
Confidence 22 367899999999999999888776532 1 11111 233455666666543 67777666
Q ss_pred HHH
Q psy9637 222 LMW 224 (490)
Q Consensus 222 ~i~ 224 (490)
+++
T Consensus 526 ~a~ 528 (742)
T 3zwc_A 526 GVL 528 (742)
T ss_dssp HHH
T ss_pred HHH
Confidence 665
|
| >2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A | Back alignment and structure |
|---|
Probab=98.87 E-value=1.6e-09 Score=106.42 Aligned_cols=110 Identities=17% Similarity=0.213 Sum_probs=81.1
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCch--H
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSA--V 82 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~--v 82 (490)
++|+|||+|.||.+++..|.+.|++|++|||++++.+.+.+.. .+...+++.++++. +|+||+|+|.+.. +
T Consensus 130 ~~v~iiGaG~~g~aia~~L~~~g~~V~v~~r~~~~~~~l~~~~----g~~~~~~~~~~~~~---aDiVi~atp~~~~~~~ 202 (275)
T 2hk9_A 130 KSILVLGAGGASRAVIYALVKEGAKVFLWNRTKEKAIKLAQKF----PLEVVNSPEEVIDK---VQVIVNTTSVGLKDED 202 (275)
T ss_dssp SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSHHHHHHHTTTS----CEEECSCGGGTGGG---CSEEEECSSTTSSTTC
T ss_pred CEEEEECchHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHc----CCeeehhHHhhhcC---CCEEEEeCCCCCCCCC
Confidence 6899999999999999999999999999999999988876542 12344577776665 9999999998742 1
Q ss_pred HHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccccccc
Q psy9637 83 DDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGC 127 (490)
Q Consensus 83 ~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~ 127 (490)
...+. .+.++++.+|+|+++ .. .+..+..+++|+.+++.
T Consensus 203 ~~~i~--~~~l~~g~~viDv~~-~~---t~ll~~a~~~g~~~v~g 241 (275)
T 2hk9_A 203 PEIFN--YDLIKKDHVVVDIIY-KE---TKLLKKAKEKGAKLLDG 241 (275)
T ss_dssp CCSSC--GGGCCTTSEEEESSS-SC---CHHHHHHHHTTCEEECS
T ss_pred CCCCC--HHHcCCCCEEEEcCC-Ch---HHHHHHHHHCcCEEECC
Confidence 11221 245788999999988 22 22344555677776643
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=98.86 E-value=2.2e-08 Score=86.79 Aligned_cols=116 Identities=16% Similarity=0.169 Sum_probs=79.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHc-ccCCCCeec-cCCHHHHHh-hCCCCcEEEEecCCCc
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLAN-EAKGTNIIG-AHSLEELVK-NLKKPRRVMMLVKAGS 80 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~-g~~~~~i~~-~~s~~e~v~-~l~~~dvIil~vp~~~ 80 (490)
.|+|.|+|+|.||..++..|.+.|++|+++|+++++.+.+.+. +.. .+.. ..++..+.+ .++.+|+||+++|+.
T Consensus 4 ~m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~--~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~- 80 (140)
T 1lss_A 4 GMYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDAL--VINGDCTKIKTLEDAGIEDADMYIAVTGKE- 80 (140)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSE--EEESCTTSHHHHHHTTTTTCSEEEECCSCH-
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCcE--EEEcCCCCHHHHHHcCcccCCEEEEeeCCc-
Confidence 3689999999999999999999999999999999988877653 321 0111 224444332 256699999999985
Q ss_pred hHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccC
Q psy9637 81 AVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCG 128 (490)
Q Consensus 81 ~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~ 128 (490)
.....+..+.+.+.++.+|+...+... .+.+...|+.++-.|
T Consensus 81 ~~~~~~~~~~~~~~~~~ii~~~~~~~~------~~~l~~~g~~~v~~p 122 (140)
T 1lss_A 81 EVNLMSSLLAKSYGINKTIARISEIEY------KDVFERLGVDVVVSP 122 (140)
T ss_dssp HHHHHHHHHHHHTTCCCEEEECSSTTH------HHHHHHTTCSEEECH
T ss_pred hHHHHHHHHHHHcCCCEEEEEecCHhH------HHHHHHcCCCEEECH
Confidence 444445555666777788876655322 224455677666555
|
| >2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=98.80 E-value=2.2e-09 Score=95.37 Aligned_cols=103 Identities=14% Similarity=0.179 Sum_probs=79.9
Q ss_pred CcEEEEcc----cHHHHHHHHHHHHCCCeEEEEeCCh--HHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCC
Q psy9637 5 GDIGLIGL----AVMGQNLILNMNDHGFTVVAYNRTT--AKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKA 78 (490)
Q Consensus 5 ~~IgiIGl----G~MG~~lA~~L~~~G~~V~v~dr~~--~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~ 78 (490)
.+|+|||+ |+||..++++|.+.||+|+.+|++. +.+ .| +..+.|++|+.+. +|++++|+|+
T Consensus 14 ~~IavIGas~~~g~~G~~~~~~L~~~G~~v~~vnp~~~g~~i-----~G-----~~~~~sl~el~~~---~Dlvii~vp~ 80 (145)
T 2duw_A 14 RTIALVGASDKPDRPSYRVMKYLLDQGYHVIPVSPKVAGKTL-----LG-----QQGYATLADVPEK---VDMVDVFRNS 80 (145)
T ss_dssp CCEEEESCCSCTTSHHHHHHHHHHHHTCCEEEECSSSTTSEE-----TT-----EECCSSTTTCSSC---CSEEECCSCS
T ss_pred CEEEEECcCCCCCChHHHHHHHHHHCCCEEEEeCCccccccc-----CC-----eeccCCHHHcCCC---CCEEEEEeCH
Confidence 57999999 8999999999999999977777654 211 12 3457788887665 8999999997
Q ss_pred CchHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccc
Q psy9637 79 GSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVG 126 (490)
Q Consensus 79 ~~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld 126 (490)
..+.++++++.. ...+.++++.|+. ..+..+.+++.|++++.
T Consensus 81 -~~v~~v~~~~~~-~g~~~i~i~~~~~----~~~l~~~a~~~Gi~~ig 122 (145)
T 2duw_A 81 -EAAWGVAQEAIA-IGAKTLWLQLGVI----NEQAAVLAREAGLSVVM 122 (145)
T ss_dssp -THHHHHHHHHHH-HTCCEEECCTTCC----CHHHHHHHHTTTCEEEC
T ss_pred -HHHHHHHHHHHH-cCCCEEEEcCChH----HHHHHHHHHHcCCEEEc
Confidence 688999988776 4456688887664 45666777888999884
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=98.75 E-value=1.5e-08 Score=89.32 Aligned_cols=91 Identities=18% Similarity=0.313 Sum_probs=72.9
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
++|+|||+|.||..++..|.+.|++|++|||++++.+.+.+... ..+...+++.+++.. +|+||.++|.+..+
T Consensus 22 ~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~~~~~~~a~~~~--~~~~~~~~~~~~~~~---~Divi~at~~~~~~-- 94 (144)
T 3oj0_A 22 NKILLVGNGMLASEIAPYFSYPQYKVTVAGRNIDHVRAFAEKYE--YEYVLINDIDSLIKN---NDVIITATSSKTPI-- 94 (144)
T ss_dssp CEEEEECCSHHHHHHGGGCCTTTCEEEEEESCHHHHHHHHHHHT--CEEEECSCHHHHHHT---CSEEEECSCCSSCS--
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHHhC--CceEeecCHHHHhcC---CCEEEEeCCCCCcE--
Confidence 68999999999999999999999999999999999988776432 123356788888876 89999999987432
Q ss_pred HHHhhcccCCCCCEEEcCCCC
Q psy9637 85 FIDKLVPLLEKGDIIIDGGNS 105 (490)
Q Consensus 85 vl~~l~~~l~~g~iiId~s~~ 105 (490)
+. ...+++|.+++|.+..
T Consensus 95 -~~--~~~l~~g~~vid~~~p 112 (144)
T 3oj0_A 95 -VE--ERSLMPGKLFIDLGNP 112 (144)
T ss_dssp -BC--GGGCCTTCEEEECCSS
T ss_pred -ee--HHHcCCCCEEEEccCC
Confidence 11 1456789999999863
|
| >1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=6.1e-09 Score=105.81 Aligned_cols=117 Identities=19% Similarity=0.191 Sum_probs=87.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHH--CCCeEEEEeCChHHHHHHHHcccC--CCCeeccCCHHHHHhhCCCCcEEEEecCCC
Q psy9637 4 KGDIGLIGLAVMGQNLILNMND--HGFTVVAYNRTTAKVDSFLANEAK--GTNIIGAHSLEELVKNLKKPRRVMMLVKAG 79 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~--~G~~V~v~dr~~~~~~~l~~~g~~--~~~i~~~~s~~e~v~~l~~~dvIil~vp~~ 79 (490)
.++|+|||+|.||..++..|.. ...+|.+|||++++.+++.+.... +..+..+++++++++. +|+|++|+|++
T Consensus 129 ~~~v~iIGaG~~a~~~a~al~~~~~~~~V~V~~r~~~~a~~la~~~~~~~g~~~~~~~~~~eav~~---aDiVi~aTps~ 205 (350)
T 1x7d_A 129 ARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRASSVAEAVKG---VDIITTVTADK 205 (350)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEECSSHHHHHTT---CSEEEECCCCS
T ss_pred CCeEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhccCceEEEeCCHHHHHhc---CCEEEEeccCC
Confidence 3589999999999999998864 457899999999999998875321 1124567899998887 89999999986
Q ss_pred chHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccccccc
Q psy9637 80 SAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGC 127 (490)
Q Consensus 80 ~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~ 127 (490)
. ...++. ...+++|.+|++.|+..|. ..++...+..++..|+|.
T Consensus 206 ~-~~pvl~--~~~l~~G~~V~~vgs~~p~-~~El~~~~~~~a~v~vD~ 249 (350)
T 1x7d_A 206 A-YATIIT--PDMLEPGMHLNAVGGDCPG-KTELHADVLRNARVFVEY 249 (350)
T ss_dssp S-EEEEEC--GGGCCTTCEEEECSCCBTT-BEEECHHHHHTSEEEESS
T ss_pred C-CCceec--HHHcCCCCEEEECCCCCCC-ceeeCHHHHhcCcEEECC
Confidence 2 222221 1467899999999987765 444445566677788887
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.72 E-value=3.9e-08 Score=97.42 Aligned_cols=112 Identities=12% Similarity=0.125 Sum_probs=80.4
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
++|+|||+|.||..+|+.|...|++|++|||++++.+.+.+.+.. .....++.+++.. +|+|++++|....-++
T Consensus 156 ~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~---~~~~~~l~~~l~~---aDvVi~~~p~~~i~~~ 229 (293)
T 3d4o_A 156 ANVAVLGLGRVGMSVARKFAALGAKVKVGARESDLLARIAEMGME---PFHISKAAQELRD---VDVCINTIPALVVTAN 229 (293)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTSE---EEEGGGHHHHTTT---CSEEEECCSSCCBCHH
T ss_pred CEEEEEeeCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCe---ecChhhHHHHhcC---CCEEEECCChHHhCHH
Confidence 589999999999999999999999999999999887666544432 1112456666554 9999999998532232
Q ss_pred HHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCC
Q psy9637 85 FIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGV 129 (490)
Q Consensus 85 vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~v 129 (490)
.+..++++.++||++..... +. . +.....|+.++++|-
T Consensus 230 ----~l~~mk~~~~lin~ar~~~~-~~-~-~~a~~~Gv~~~~~~~ 267 (293)
T 3d4o_A 230 ----VLAEMPSHTFVIDLASKPGG-TD-F-RYAEKRGIKALLVPG 267 (293)
T ss_dssp ----HHHHSCTTCEEEECSSTTCS-BC-H-HHHHHHTCEEEECCC
T ss_pred ----HHHhcCCCCEEEEecCCCCC-CC-H-HHHHHCCCEEEECCC
Confidence 33457889999999974322 21 1 444566887776653
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.71 E-value=6.6e-08 Score=88.51 Aligned_cols=116 Identities=9% Similarity=0.049 Sum_probs=78.1
Q ss_pred CcEEEEcccHHHHHHHHHHHHC-CCeEEEEeCChHHHHHHHHcccCCCCeec-cCCHHHHHhh--CCCCcEEEEecCCCc
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDH-GFTVVAYNRTTAKVDSFLANEAKGTNIIG-AHSLEELVKN--LKKPRRVMMLVKAGS 80 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~-G~~V~v~dr~~~~~~~l~~~g~~~~~i~~-~~s~~e~v~~--l~~~dvIil~vp~~~ 80 (490)
++|.|+|+|.||..++..|.+. |++|+++|+++++++.+.+.+.. -+.. .++.+.+.+. ++.+|+||+++|+..
T Consensus 40 ~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~~g~~--~~~gd~~~~~~l~~~~~~~~ad~vi~~~~~~~ 117 (183)
T 3c85_A 40 AQVLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQHRSEGRN--VISGDATDPDFWERILDTGHVKLVLLAMPHHQ 117 (183)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHHTTCC--EEECCTTCHHHHHTBCSCCCCCEEEECCSSHH
T ss_pred CcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHHHHHHHHHCCCC--EEEcCCCCHHHHHhccCCCCCCEEEEeCCChH
Confidence 5899999999999999999999 99999999999999888765532 0111 2333333332 567999999999865
Q ss_pred hHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccC
Q psy9637 81 AVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCG 128 (490)
Q Consensus 81 ~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~ 128 (490)
....++..+ ..+.+...||...+ .+.. .+.+.+.|+.++..|
T Consensus 118 ~~~~~~~~~-~~~~~~~~ii~~~~-~~~~----~~~l~~~G~~~vi~p 159 (183)
T 3c85_A 118 GNQTALEQL-QRRNYKGQIAAIAE-YPDQ----LEGLLESGVDAAFNI 159 (183)
T ss_dssp HHHHHHHHH-HHTTCCSEEEEEES-SHHH----HHHHHHHTCSEEEEH
T ss_pred HHHHHHHHH-HHHCCCCEEEEEEC-CHHH----HHHHHHcCCCEEEch
Confidence 555554433 33444444444333 2222 235566788877666
|
| >2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A | Back alignment and structure |
|---|
Probab=98.70 E-value=2.7e-08 Score=99.63 Aligned_cols=101 Identities=14% Similarity=0.203 Sum_probs=74.2
Q ss_pred CCCCCcEEEEcccHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHH----c---ccCCCCeeccCCHHHHHhhCCCCcEE
Q psy9637 1 MAAKGDIGLIGLAVMGQNLILNMNDHGF-TVVAYNRTTAKVDSFLA----N---EAKGTNIIGAHSLEELVKNLKKPRRV 72 (490)
Q Consensus 1 M~~~~~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~----~---g~~~~~i~~~~s~~e~v~~l~~~dvI 72 (490)
|+.+|||+|||+|.||.++|..|+.+|+ +|++||+++++++.... . .....++..++++ +.++. +|+|
T Consensus 1 M~~~~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~-~a~~~---aDiV 76 (317)
T 2ewd_A 1 MIERRKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAEGIPQGKALDITHSMVMFGSTSKVIGTDDY-ADISG---SDVV 76 (317)
T ss_dssp CCCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTT---CSEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCchHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHhCC---CCEE
Confidence 7777899999999999999999999999 99999999887765321 0 0012345555666 44444 9999
Q ss_pred EEecCCC---------------chHHHHHHhhcccCCCCCEEEcCCCCC
Q psy9637 73 MMLVKAG---------------SAVDDFIDKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 73 il~vp~~---------------~~v~~vl~~l~~~l~~g~iiId~s~~~ 106 (490)
|++++.+ ...++++..+.++. ++.++|..+|..
T Consensus 77 i~avg~p~~~g~~r~d~~~~~~~i~~~i~~~i~~~~-~~~iii~~sNp~ 124 (317)
T 2ewd_A 77 IITASIPGRPKDDRSELLFGNARILDSVAEGVKKYC-PNAFVICITNPL 124 (317)
T ss_dssp EECCCCSSCCSSCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEECCSSH
T ss_pred EEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHHHHC-CCcEEEEeCChH
Confidence 9999432 12456677777765 688999998854
|
| >3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=98.70 E-value=1e-07 Score=96.30 Aligned_cols=139 Identities=12% Similarity=0.116 Sum_probs=95.9
Q ss_pred CCCCCcEEEEcccHHHHHHHHHHHHC-CCeEE-EEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCC
Q psy9637 1 MAAKGDIGLIGLAVMGQNLILNMNDH-GFTVV-AYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKA 78 (490)
Q Consensus 1 M~~~~~IgiIGlG~MG~~lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~ 78 (490)
|+.++||||||+|.||..++..|.+. +++|+ ++|+++++.+.+.+... +..+++++++++. +.+|+|++|+|+
T Consensus 1 M~~~~rvgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g----~~~~~~~~~~l~~-~~~D~V~i~tp~ 75 (344)
T 3euw_A 1 MSLTLRIALFGAGRIGHVHAANIAANPDLELVVIADPFIEGAQRLAEANG----AEAVASPDEVFAR-DDIDGIVIGSPT 75 (344)
T ss_dssp --CCEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHTTT----CEEESSHHHHTTC-SCCCEEEECSCG
T ss_pred CCCceEEEEECCcHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcC----CceeCCHHHHhcC-CCCCEEEEeCCc
Confidence 76677999999999999999999986 67766 79999999988876532 3468999999873 248999999999
Q ss_pred CchHHHHHHhhcccCCCC-CEEEcCC-CCChHHHHHHHHHHHHccccccccCCCCCccccccCCccCCCCCcchHHHHHH
Q psy9637 79 GSAVDDFIDKLVPLLEKG-DIIIDGG-NSEYQDTDRRSKALEAKGLLYVGCGVSGGEDGARYGPSLMPGGNPAAWPALKP 156 (490)
Q Consensus 79 ~~~v~~vl~~l~~~l~~g-~iiId~s-~~~~~~~~~~~~~l~~~gi~~ld~~vsGg~~~a~~G~~im~GG~~~a~~~v~~ 156 (490)
....+.+.. ++ ..| .++++-- +....+..++.+.++++|+.+.-.... + -...+..++.
T Consensus 76 ~~h~~~~~~-al---~~gk~v~~EKP~~~~~~~~~~l~~~a~~~g~~~~v~~~~------r---------~~p~~~~~k~ 136 (344)
T 3euw_A 76 STHVDLITR-AV---ERGIPALCEKPIDLDIEMVRACKEKIGDGASKVMLGFNR------R---------FDPSFAAINA 136 (344)
T ss_dssp GGHHHHHHH-HH---HTTCCEEECSCSCSCHHHHHHHHHHHGGGGGGEEECCGG------G---------GCHHHHHHHH
T ss_pred hhhHHHHHH-HH---HcCCcEEEECCCCCCHHHHHHHHHHHHhcCCeEEecchh------h---------cCHHHHHHHH
Confidence 755444433 32 234 4666643 445677777777777777654332211 0 0235677888
Q ss_pred HHHh--hCC
Q psy9637 157 IFQK--LNP 163 (490)
Q Consensus 157 ll~~--l~~ 163 (490)
+++. +|.
T Consensus 137 ~i~~g~iG~ 145 (344)
T 3euw_A 137 RVANQEIGN 145 (344)
T ss_dssp HHHTTTTSS
T ss_pred HHhcCCCCc
Confidence 8875 554
|
| >1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=98.66 E-value=6.6e-08 Score=96.43 Aligned_cols=96 Identities=16% Similarity=0.076 Sum_probs=70.1
Q ss_pred CcEEEEcccHHHHHHHHHHHHCC--CeEEEEeCChHHHHHHHHccc-----CCCCeec-cCCHHHHHhhCCCCcEEEEec
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHG--FTVVAYNRTTAKVDSFLANEA-----KGTNIIG-AHSLEELVKNLKKPRRVMMLV 76 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G--~~V~v~dr~~~~~~~l~~~g~-----~~~~i~~-~~s~~e~v~~l~~~dvIil~v 76 (490)
|||+|||+|.||.++|..|+++| ++|++||+++++++.+..... ....+.. ..++ +.++ .+|+||+++
T Consensus 2 ~kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~-~~~~---~aDvViiav 77 (309)
T 1hyh_A 2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDW-AALA---DADVVISTL 77 (309)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCG-GGGT---TCSEEEECC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHHHHhhhhhcCCCeEEEeCCH-HHhC---CCCEEEEec
Confidence 69999999999999999999999 899999999988877653211 0011222 3455 4334 499999999
Q ss_pred CCCch-------------------HHHHHHhhcccCCCCCEEEcCCCC
Q psy9637 77 KAGSA-------------------VDDFIDKLVPLLEKGDIIIDGGNS 105 (490)
Q Consensus 77 p~~~~-------------------v~~vl~~l~~~l~~g~iiId~s~~ 105 (490)
|.+.. ++++++.+.++. ++.+||..+|.
T Consensus 78 ~~~~~~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~-~~~~ii~~tNp 124 (309)
T 1hyh_A 78 GNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESG-FHGVLVVISNP 124 (309)
T ss_dssp SCGGGTC-------CTTHHHHHHHHHHHHHHHHHTT-CCSEEEECSSS
T ss_pred CCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCcEEEEEcCc
Confidence 98653 467777777765 56677777773
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=98.64 E-value=2.3e-07 Score=77.75 Aligned_cols=105 Identities=13% Similarity=0.083 Sum_probs=74.0
Q ss_pred CCCcEEEEcccHHHHHHHHHHHHCC-CeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCch
Q psy9637 3 AKGDIGLIGLAVMGQNLILNMNDHG-FTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSA 81 (490)
Q Consensus 3 ~~~~IgiIGlG~MG~~lA~~L~~~G-~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~ 81 (490)
++++|.|+|+|.||..++..|.+.| ++|+++||++++.+.+...+... ...-..+.+++.+.++.+|+||.++|.. .
T Consensus 4 ~~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~~-~~~d~~~~~~~~~~~~~~d~vi~~~~~~-~ 81 (118)
T 3ic5_A 4 MRWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDLAALAVLNRMGVAT-KQVDAKDEAGLAKALGGFDAVISAAPFF-L 81 (118)
T ss_dssp TCEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHHTTTCEE-EECCTTCHHHHHHHTTTCSEEEECSCGG-G
T ss_pred CcCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhCCCcE-EEecCCCHHHHHHHHcCCCEEEECCCch-h
Confidence 3468999999999999999999999 99999999999988876433210 0001334455555566799999999864 4
Q ss_pred HHHHHHhhcccCCCCCEEEcCCCCChHHHHHH
Q psy9637 82 VDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRR 113 (490)
Q Consensus 82 v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~ 113 (490)
...+++.. ...|..++|.++.. ..+.+.
T Consensus 82 ~~~~~~~~---~~~g~~~~~~~~~~-~~~~~~ 109 (118)
T 3ic5_A 82 TPIIAKAA---KAAGAHYFDLTEDV-AATNAV 109 (118)
T ss_dssp HHHHHHHH---HHTTCEEECCCSCH-HHHHHH
T ss_pred hHHHHHHH---HHhCCCEEEecCcH-HHHHHH
Confidence 45555444 34678888987654 344433
|
| >2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=98.61 E-value=8.9e-08 Score=95.05 Aligned_cols=116 Identities=17% Similarity=0.139 Sum_probs=82.1
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHcccCCC-CeeccCCHHHHHhhCCCCcEEEEecCCCchH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGF-TVVAYNRTTAKVDSFLANEAKGT-NIIGAHSLEELVKNLKKPRRVMMLVKAGSAV 82 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~g~~~~-~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v 82 (490)
++|.|||+|.||.+++..|++.|+ +|+++||++++++.+.+...... .+ .+..++.+.+..+|+||.|+|.+...
T Consensus 142 ~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~~ka~~la~~~~~~~~~~---~~~~~~~~~~~~aDivIn~t~~~~~~ 218 (297)
T 2egg_A 142 KRILVIGAGGGARGIYFSLLSTAAERIDMANRTVEKAERLVREGDERRSAY---FSLAEAETRLAEYDIIINTTSVGMHP 218 (297)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHSCSSSCCE---ECHHHHHHTGGGCSEEEECSCTTCSS
T ss_pred CEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhhhccCce---eeHHHHHhhhccCCEEEECCCCCCCC
Confidence 589999999999999999999998 99999999999998876532100 11 12233333334499999999987431
Q ss_pred --HHH-HHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccccccc
Q psy9637 83 --DDF-IDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGC 127 (490)
Q Consensus 83 --~~v-l~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~ 127 (490)
+.+ +. ...++++.+|+|++.. |..+. ..+..+++|+.++|.
T Consensus 219 ~~~~~~i~--~~~l~~~~~v~D~~y~-P~~T~-ll~~A~~~G~~~v~G 262 (297)
T 2egg_A 219 RVEVQPLS--LERLRPGVIVSDIIYN-PLETK-WLKEAKARGARVQNG 262 (297)
T ss_dssp CCSCCSSC--CTTCCTTCEEEECCCS-SSSCH-HHHHHHHTTCEEECS
T ss_pred CCCCCCCC--HHHcCCCCEEEEcCCC-CCCCH-HHHHHHHCcCEEECC
Confidence 111 11 2356789999999984 55553 566777788876644
|
| >3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2} | Back alignment and structure |
|---|
Probab=98.59 E-value=2.3e-07 Score=94.08 Aligned_cols=116 Identities=16% Similarity=0.265 Sum_probs=84.9
Q ss_pred CCCCCcEEEEcccHHHHHHHHHHHHC-CCeEE-EEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCC
Q psy9637 1 MAAKGDIGLIGLAVMGQNLILNMNDH-GFTVV-AYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKA 78 (490)
Q Consensus 1 M~~~~~IgiIGlG~MG~~lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~ 78 (490)
|.+++||||||+|.||..++..|.+. +++|+ ++|+++++.+.+.+... +..+++++++++. +.+|+|++|+|+
T Consensus 2 M~~~~~vgiiG~G~~g~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~g----~~~~~~~~~~l~~-~~~D~V~i~tp~ 76 (354)
T 3db2_A 2 MYNPVGVAAIGLGRWAYVMADAYTKSEKLKLVTCYSRTEDKREKFGKRYN----CAGDATMEALLAR-EDVEMVIITVPN 76 (354)
T ss_dssp CCCCEEEEEECCSHHHHHHHHHHTTCSSEEEEEEECSSHHHHHHHHHHHT----CCCCSSHHHHHHC-SSCCEEEECSCT
T ss_pred CCCcceEEEEccCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcC----CCCcCCHHHHhcC-CCCCEEEEeCCh
Confidence 55557999999999999999999987 78855 88999999988876532 2247899999853 348999999999
Q ss_pred CchHHHHHHhhcccCCCCC-EEEcCC-CCChHHHHHHHHHHHHcccccc
Q psy9637 79 GSAVDDFIDKLVPLLEKGD-IIIDGG-NSEYQDTDRRSKALEAKGLLYV 125 (490)
Q Consensus 79 ~~~v~~vl~~l~~~l~~g~-iiId~s-~~~~~~~~~~~~~l~~~gi~~l 125 (490)
....+.+... +..|+ ++++-- +....+..++.+.++++|+.+.
T Consensus 77 ~~h~~~~~~a----l~~gk~vl~EKP~~~~~~~~~~l~~~a~~~~~~~~ 121 (354)
T 3db2_A 77 DKHAEVIEQC----ARSGKHIYVEKPISVSLDHAQRIDQVIKETGVKFL 121 (354)
T ss_dssp TSHHHHHHHH----HHTTCEEEEESSSCSSHHHHHHHHHHHHHHCCCEE
T ss_pred HHHHHHHHHH----HHcCCEEEEccCCCCCHHHHHHHHHHHHHcCCeEE
Confidence 7555444332 23454 555543 4456777777787777777543
|
| >3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=98.58 E-value=2.5e-07 Score=91.95 Aligned_cols=110 Identities=18% Similarity=0.253 Sum_probs=80.4
Q ss_pred CCcEEEEcccHHHHH-HHHHHHH-CCCeEE-EEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCc
Q psy9637 4 KGDIGLIGLAVMGQN-LILNMND-HGFTVV-AYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGS 80 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~-lA~~L~~-~G~~V~-v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~ 80 (490)
++||||||+|.||.. ++..|.+ .+++++ ++|+++++.+.+.+... +..+++++++++. +|+|++|+|+..
T Consensus 6 ~~~igiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~~----~~~~~~~~~ll~~---~D~V~i~tp~~~ 78 (308)
T 3uuw_A 6 NIKMGMIGLGSIAQKAYLPILTKSERFEFVGAFTPNKVKREKICSDYR----IMPFDSIESLAKK---CDCIFLHSSTET 78 (308)
T ss_dssp CCEEEEECCSHHHHHHTHHHHTSCSSSEEEEEECSCHHHHHHHHHHHT----CCBCSCHHHHHTT---CSEEEECCCGGG
T ss_pred cCcEEEEecCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcC----CCCcCCHHHHHhc---CCEEEEeCCcHh
Confidence 468999999999996 8888887 467877 89999999998876532 1237899999885 899999999975
Q ss_pred hHHHHHHhhcccCCCCC-EEEc-CCCCChHHHHHHHHHHHHccccc
Q psy9637 81 AVDDFIDKLVPLLEKGD-IIID-GGNSEYQDTDRRSKALEAKGLLY 124 (490)
Q Consensus 81 ~v~~vl~~l~~~l~~g~-iiId-~s~~~~~~~~~~~~~l~~~gi~~ 124 (490)
..+.+ ..++ +.|. ++++ -.+....+..++.+.++++|+.+
T Consensus 79 h~~~~-~~al---~~gk~vl~EKP~~~~~~~~~~l~~~a~~~g~~~ 120 (308)
T 3uuw_A 79 HYEII-KILL---NLGVHVYVDKPLASTVSQGEELIELSTKKNLNL 120 (308)
T ss_dssp HHHHH-HHHH---HTTCEEEECSSSSSSHHHHHHHHHHHHHHTCCE
T ss_pred HHHHH-HHHH---HCCCcEEEcCCCCCCHHHHHHHHHHHHHcCCEE
Confidence 44443 3332 3444 5555 23445677777778777777654
|
| >1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A | Back alignment and structure |
|---|
Probab=98.56 E-value=9.8e-08 Score=95.86 Aligned_cols=114 Identities=14% Similarity=0.106 Sum_probs=84.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHH--CCCeEEEEeCChHHHHHHHHcccC-CCCeeccCCHHHHHhhCCCCcEEEEecCCCc
Q psy9637 4 KGDIGLIGLAVMGQNLILNMND--HGFTVVAYNRTTAKVDSFLANEAK-GTNIIGAHSLEELVKNLKKPRRVMMLVKAGS 80 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~--~G~~V~v~dr~~~~~~~l~~~g~~-~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~ 80 (490)
.++|+|||+|.||..++..|.+ ...+|.+|||++++.+++.+.... ...+. ++++++++ . +|+|++|+|+..
T Consensus 125 ~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~~~~a~~la~~~~~~~~~~~-~~~~~e~v-~---aDvVi~aTp~~~ 199 (322)
T 1omo_A 125 SSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGISAS-VQPAEEAS-R---CDVLVTTTPSRK 199 (322)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTCCEE-ECCHHHHT-S---SSEEEECCCCSS
T ss_pred CCEEEEEcCcHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhcCceEE-ECCHHHHh-C---CCEEEEeeCCCC
Confidence 3589999999999999999987 357899999999999998865321 11245 78888888 6 899999999864
Q ss_pred hHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccC
Q psy9637 81 AVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCG 128 (490)
Q Consensus 81 ~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~ 128 (490)
+ ++. ...+++|.+|++.|+..|. ..+....+..++..|+|.+
T Consensus 200 p---v~~--~~~l~~G~~V~~ig~~~p~-~~el~~~~~~~a~v~vD~~ 241 (322)
T 1omo_A 200 P---VVK--AEWVEEGTHINAIGADGPG-KQELDVEILKKAKIVVDDL 241 (322)
T ss_dssp C---CBC--GGGCCTTCEEEECSCCSTT-CCCBCHHHHHTEEEEESCH
T ss_pred c---eec--HHHcCCCeEEEECCCCCCC-ccccCHHHHhcCeEEECCH
Confidence 2 221 2467899999999887655 3333344555666788863
|
| >4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.56 E-value=4.1e-07 Score=91.34 Aligned_cols=135 Identities=10% Similarity=0.110 Sum_probs=94.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHHC-CCeEE-EEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCch
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDH-GFTVV-AYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSA 81 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~ 81 (490)
++||||||+|.||..++..|.+. +++|+ ++|+++++.+.+.+... +. +++++++++. +.+|+|++|+|+...
T Consensus 3 ~~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~----~~-~~~~~~~l~~-~~~D~V~i~tp~~~h 76 (331)
T 4hkt_A 3 TVRFGLLGAGRIGKVHAKAVSGNADARLVAVADAFPAAAEAIAGAYG----CE-VRTIDAIEAA-ADIDAVVICTPTDTH 76 (331)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTT----CE-ECCHHHHHHC-TTCCEEEECSCGGGH
T ss_pred ceEEEEECCCHHHHHHHHHHhhCCCcEEEEEECCCHHHHHHHHHHhC----CC-cCCHHHHhcC-CCCCEEEEeCCchhH
Confidence 46999999999999999999985 77876 79999999988876532 33 7899999883 238999999999755
Q ss_pred HHHHHHhhcccCCCCC-EEEcCC-CCChHHHHHHHHHHHHccccccccCCCCCccccccCCccCCCCCcchHHHHHHHHH
Q psy9637 82 VDDFIDKLVPLLEKGD-IIIDGG-NSEYQDTDRRSKALEAKGLLYVGCGVSGGEDGARYGPSLMPGGNPAAWPALKPIFQ 159 (490)
Q Consensus 82 v~~vl~~l~~~l~~g~-iiId~s-~~~~~~~~~~~~~l~~~gi~~ld~~vsGg~~~a~~G~~im~GG~~~a~~~v~~ll~ 159 (490)
.+.+.. ++ ..|+ ++++-- +..+.+..++.+.++++|+.+.-.... + -...+..++.+++
T Consensus 77 ~~~~~~-al---~~gk~v~~EKP~~~~~~~~~~l~~~a~~~g~~~~v~~~~------r---------~~p~~~~~~~~i~ 137 (331)
T 4hkt_A 77 ADLIER-FA---RAGKAIFCEKPIDLDAERVRACLKVVSDTKAKLMVGFNR------R---------FDPHFMAVRKAID 137 (331)
T ss_dssp HHHHHH-HH---HTTCEEEECSCSCSSHHHHHHHHHHHHHTTCCEEECCGG------G---------GCHHHHHHHHHHH
T ss_pred HHHHHH-HH---HcCCcEEEecCCCCCHHHHHHHHHHHHHcCCeEEEcccc------c---------CCHHHHHHHHHHH
Confidence 444433 32 3444 555543 445677777778878777655322211 0 0235677888887
Q ss_pred h--hCC
Q psy9637 160 K--LNP 163 (490)
Q Consensus 160 ~--l~~ 163 (490)
. +|.
T Consensus 138 ~g~iG~ 143 (331)
T 4hkt_A 138 DGRIGE 143 (331)
T ss_dssp TTTTCS
T ss_pred cCCCCc
Confidence 5 554
|
| >3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.56 E-value=1e-07 Score=96.12 Aligned_cols=109 Identities=19% Similarity=0.291 Sum_probs=90.7
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
++|||||+|++|..+|+.+..-|.+|.+||+.+... ..+.+. ...+++++++. +|+|.+.+|-...++.
T Consensus 142 ~tvGIiG~G~IG~~va~~~~~fg~~v~~~d~~~~~~--~~~~~~------~~~~l~ell~~---sDivslh~Plt~~T~~ 210 (334)
T 3kb6_A 142 LTLGVIGTGRIGSRVAMYGLAFGMKVLCYDVVKRED--LKEKGC------VYTSLDELLKE---SDVISLHVPYTKETHH 210 (334)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHH--HHHTTC------EECCHHHHHHH---CSEEEECCCCCTTTTT
T ss_pred cEEEEECcchHHHHHHHhhcccCceeeecCCccchh--hhhcCc------eecCHHHHHhh---CCEEEEcCCCChhhcc
Confidence 579999999999999999999999999999875432 233332 35789999988 9999999999888887
Q ss_pred HH-HhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccc
Q psy9637 85 FI-DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLY 124 (490)
Q Consensus 85 vl-~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ 124 (490)
++ .+.+..+++|.++|+++.+.--+...+.+.++...+..
T Consensus 211 li~~~~l~~mk~~a~lIN~aRG~iVde~aL~~aL~~g~i~g 251 (334)
T 3kb6_A 211 MINEERISLMKDGVYLINTARGKVVDTDALYRAYQRGKFSG 251 (334)
T ss_dssp CBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTCEEE
T ss_pred CcCHHHHhhcCCCeEEEecCccccccHHHHHHHHHhCCceE
Confidence 77 56667899999999999988888888888888765543
|
| >3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=98.54 E-value=3.6e-07 Score=91.83 Aligned_cols=140 Identities=14% Similarity=0.128 Sum_probs=95.1
Q ss_pred CC-CCCcEEEEcccHHHHHHHHHHHHC-CCeEE-EEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecC
Q psy9637 1 MA-AKGDIGLIGLAVMGQNLILNMNDH-GFTVV-AYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVK 77 (490)
Q Consensus 1 M~-~~~~IgiIGlG~MG~~lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp 77 (490)
|+ .++||||||+|.||..++..|.+. +++|+ ++|+++++.+.+.+.... ...+++++++++. +.+|+|++|+|
T Consensus 1 M~m~~~~igiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~---~~~~~~~~~ll~~-~~~D~V~i~tp 76 (330)
T 3e9m_A 1 MSLDKIRYGIMSTAQIVPRFVAGLRESAQAEVRGIASRRLENAQKMAKELAI---PVAYGSYEELCKD-ETIDIIYIPTY 76 (330)
T ss_dssp --CCCEEEEECSCCTTHHHHHHHHHHSSSEEEEEEBCSSSHHHHHHHHHTTC---CCCBSSHHHHHHC-TTCSEEEECCC
T ss_pred CCCCeEEEEEECchHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHcCC---CceeCCHHHHhcC-CCCCEEEEcCC
Confidence 54 346899999999999999999985 67766 789999999888765321 1357899999873 24899999999
Q ss_pred CCchHHHHHHhhcccCCCC-CEEEcCC-CCChHHHHHHHHHHHHccccccccCCCCCccccccCCccCCCCCcchHHHHH
Q psy9637 78 AGSAVDDFIDKLVPLLEKG-DIIIDGG-NSEYQDTDRRSKALEAKGLLYVGCGVSGGEDGARYGPSLMPGGNPAAWPALK 155 (490)
Q Consensus 78 ~~~~v~~vl~~l~~~l~~g-~iiId~s-~~~~~~~~~~~~~l~~~gi~~ld~~vsGg~~~a~~G~~im~GG~~~a~~~v~ 155 (490)
+....+.+.. + +..| .++++-- +....+..++.+.++++|+.+.-+...- -...+..++
T Consensus 77 ~~~h~~~~~~-a---l~~gk~vl~EKP~~~~~~e~~~l~~~a~~~g~~~~v~~~~r---------------~~p~~~~~k 137 (330)
T 3e9m_A 77 NQGHYSAAKL-A---LSQGKPVLLEKPFTLNAAEAEELFAIAQEQGVFLMEAQKSV---------------FLPITQKVK 137 (330)
T ss_dssp GGGHHHHHHH-H---HHTTCCEEECSSCCSSHHHHHHHHHHHHHTTCCEEECCSGG---------------GCHHHHHHH
T ss_pred CHHHHHHHHH-H---HHCCCeEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEEEhhh---------------hCHHHHHHH
Confidence 9755444433 3 2344 4666654 4456777777777777777554332210 023567788
Q ss_pred HHHH--hhCC
Q psy9637 156 PIFQ--KLNP 163 (490)
Q Consensus 156 ~ll~--~l~~ 163 (490)
.+++ .+|.
T Consensus 138 ~~i~~g~iG~ 147 (330)
T 3e9m_A 138 ATIQEGGLGE 147 (330)
T ss_dssp HHHHTTTTCS
T ss_pred HHHhCCCCCC
Confidence 8887 3554
|
| >1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=5.3e-07 Score=90.49 Aligned_cols=99 Identities=14% Similarity=0.158 Sum_probs=70.6
Q ss_pred CCCCCcEEEEcccHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHc---c----cCCCCeeccCCHHHHHhhCCCCcEE
Q psy9637 1 MAAKGDIGLIGLAVMGQNLILNMNDHGF-TVVAYNRTTAKVDSFLAN---E----AKGTNIIGAHSLEELVKNLKKPRRV 72 (490)
Q Consensus 1 M~~~~~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~---g----~~~~~i~~~~s~~e~v~~l~~~dvI 72 (490)
|+.++||+|||+|.||.++|..|+.+|+ +|+++|+++++++..... . ....++..++++ +.++. +|+|
T Consensus 1 m~~~~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~~---aD~V 76 (322)
T 1t2d_A 1 MAPKAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTY-DDLAG---ADVV 76 (322)
T ss_dssp -CCCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCG-GGGTT---CSEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHhCC---CCEE
Confidence 6667899999999999999999999999 999999998877643221 1 112345555676 44444 9999
Q ss_pred EEecCCCc--------------------hHHHHHHhhcccCCCCCEEEcCCC
Q psy9637 73 MMLVKAGS--------------------AVDDFIDKLVPLLEKGDIIIDGGN 104 (490)
Q Consensus 73 il~vp~~~--------------------~v~~vl~~l~~~l~~g~iiId~s~ 104 (490)
|++++.+. .++++.+.+.+.. ++.++|..||
T Consensus 77 i~a~g~p~k~g~~~qe~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~tN 127 (322)
T 1t2d_A 77 IVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNC-PNAFIIVVTN 127 (322)
T ss_dssp EECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEECSS
T ss_pred EEeCCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecC
Confidence 99983321 2455556666665 7778777777
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=98.49 E-value=6.5e-07 Score=78.40 Aligned_cols=114 Identities=14% Similarity=0.195 Sum_probs=73.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeec-cCCHHHHHh-hCCCCcEEEEecCCCch
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIG-AHSLEELVK-NLKKPRRVMMLVKAGSA 81 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~-~~s~~e~v~-~l~~~dvIil~vp~~~~ 81 (490)
+.+|.|+|+|.+|..+|..|.+.|++|+++|+++++++.+.+.+.. -+.. .++.+.+.+ .++.+|+|++++|++..
T Consensus 7 ~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~~g~~--~i~gd~~~~~~l~~a~i~~ad~vi~~~~~~~~ 84 (140)
T 3fwz_A 7 CNHALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDELRERGVR--AVLGNAANEEIMQLAHLECAKWLILTIPNGYE 84 (140)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCE--EEESCTTSHHHHHHTTGGGCSEEEECCSCHHH
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHcCCC--EEECCCCCHHHHHhcCcccCCEEEEECCChHH
Confidence 3579999999999999999999999999999999999988875542 1111 223332221 24568999999998644
Q ss_pred HHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccccc
Q psy9637 82 VDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYV 125 (490)
Q Consensus 82 v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~l 125 (490)
...++.. +..+.++..||-..+. +. ..+.+.+.|+..+
T Consensus 85 n~~~~~~-a~~~~~~~~iiar~~~-~~----~~~~l~~~G~d~v 122 (140)
T 3fwz_A 85 AGEIVAS-ARAKNPDIEIIARAHY-DD----EVAYITERGANQV 122 (140)
T ss_dssp HHHHHHH-HHHHCSSSEEEEEESS-HH----HHHHHHHTTCSEE
T ss_pred HHHHHHH-HHHHCCCCeEEEEECC-HH----HHHHHHHCCCCEE
Confidence 4434333 3334444444433331 12 2345555676544
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.48 E-value=1e-06 Score=76.93 Aligned_cols=98 Identities=14% Similarity=0.149 Sum_probs=67.0
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeec-cCCHHHHHh-hCCCCcEEEEecCCCch
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIG-AHSLEELVK-NLKKPRRVMMLVKAGSA 81 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~-~~s~~e~v~-~l~~~dvIil~vp~~~~ 81 (490)
+++|.|+|+|.+|..++..|.++|++|+++|+++++++.+.+.+.. -+.. .++++.+.+ .++.+|+||+++|+. .
T Consensus 6 ~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~~~~~--~~~gd~~~~~~l~~~~~~~~d~vi~~~~~~-~ 82 (141)
T 3llv_A 6 RYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSKEKIELLEDEGFD--AVIADPTDESFYRSLDLEGVSAVLITGSDD-E 82 (141)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCE--EEECCTTCHHHHHHSCCTTCSEEEECCSCH-H
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCc--EEECCCCCHHHHHhCCcccCCEEEEecCCH-H
Confidence 4689999999999999999999999999999999999988775432 0111 223333322 245689999999964 3
Q ss_pred HHHHHHhhcccCCCCCEEEcCCC
Q psy9637 82 VDDFIDKLVPLLEKGDIIIDGGN 104 (490)
Q Consensus 82 v~~vl~~l~~~l~~g~iiId~s~ 104 (490)
....+...+..+....+|.-..+
T Consensus 83 ~n~~~~~~a~~~~~~~iia~~~~ 105 (141)
T 3llv_A 83 FNLKILKALRSVSDVYAIVRVSS 105 (141)
T ss_dssp HHHHHHHHHHHHCCCCEEEEESC
T ss_pred HHHHHHHHHHHhCCceEEEEEcC
Confidence 33333333333445566665544
|
| >3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.47 E-value=6.3e-07 Score=90.47 Aligned_cols=113 Identities=12% Similarity=0.143 Sum_probs=82.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHHC-CCeEE-EEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCch
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDH-GFTVV-AYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSA 81 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~ 81 (490)
++||||||+|.||..++..|.+. +++|+ ++|+++++.+.+.+.... ...+++++++++. +.+|+|++|+|+...
T Consensus 2 ~~rvgiIG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~---~~~~~~~~~ll~~-~~~D~V~i~tp~~~h 77 (344)
T 3ezy_A 2 SLRIGVIGLGRIGTIHAENLKMIDDAILYAISDVREDRLREMKEKLGV---EKAYKDPHELIED-PNVDAVLVCSSTNTH 77 (344)
T ss_dssp CEEEEEECCSHHHHHHHHHGGGSTTEEEEEEECSCHHHHHHHHHHHTC---SEEESSHHHHHHC-TTCCEEEECSCGGGH
T ss_pred eeEEEEEcCCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHhCC---CceeCCHHHHhcC-CCCCEEEEcCCCcch
Confidence 46999999999999999999875 67766 799999999888765321 1357899999883 348999999999754
Q ss_pred HHHHHHhhcccCCCCC-EEEcCC-CCChHHHHHHHHHHHHccccc
Q psy9637 82 VDDFIDKLVPLLEKGD-IIIDGG-NSEYQDTDRRSKALEAKGLLY 124 (490)
Q Consensus 82 v~~vl~~l~~~l~~g~-iiId~s-~~~~~~~~~~~~~l~~~gi~~ 124 (490)
.+.+.. + +..|. ++++-- +....+..++.+.++++|+.+
T Consensus 78 ~~~~~~-a---l~~gk~v~~EKP~~~~~~e~~~l~~~a~~~g~~~ 118 (344)
T 3ezy_A 78 SELVIA-C---AKAKKHVFCEKPLSLNLADVDRMIEETKKADVIL 118 (344)
T ss_dssp HHHHHH-H---HHTTCEEEEESCSCSCHHHHHHHHHHHHHHTCCE
T ss_pred HHHHHH-H---HhcCCeEEEECCCCCCHHHHHHHHHHHHHhCCcE
Confidence 444433 3 33454 566643 445677777778777777654
|
| >1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3 | Back alignment and structure |
|---|
Probab=98.47 E-value=1.8e-07 Score=98.29 Aligned_cols=99 Identities=9% Similarity=0.051 Sum_probs=76.9
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
++|||||+|.||..+|++|...|.+|++||+++.+.......+. ...++++++.. +|+|++++.+...+.
T Consensus 258 ktVgIIG~G~IG~~vA~~l~~~G~~Viv~d~~~~~~~~a~~~g~------~~~~l~ell~~---aDiVi~~~~t~~lI~- 327 (479)
T 1v8b_A 258 KIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEGF------NVVTLDEIVDK---GDFFITCTGNVDVIK- 327 (479)
T ss_dssp SEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTTC------EECCHHHHTTT---CSEEEECCSSSSSBC-
T ss_pred CEEEEEeeCHHHHHHHHHHHhCcCEEEEEeCChhhHHHHHHcCC------EecCHHHHHhc---CCEEEECCChhhhcC-
Confidence 58999999999999999999999999999999987644444433 24588888776 999999964432221
Q ss_pred HHHhhcccCCCCCEEEcCCCCCh-HHHHHHHH
Q psy9637 85 FIDKLVPLLEKGDIIIDGGNSEY-QDTDRRSK 115 (490)
Q Consensus 85 vl~~l~~~l~~g~iiId~s~~~~-~~~~~~~~ 115 (490)
.+.+..+++|.+|||++.... -+...+.+
T Consensus 328 --~~~l~~MK~gailiNvgrg~~EId~~aL~~ 357 (479)
T 1v8b_A 328 --LEHLLKMKNNAVVGNIGHFDDEIQVNELFN 357 (479)
T ss_dssp --HHHHTTCCTTCEEEECSSTTTSBCHHHHHT
T ss_pred --HHHHhhcCCCcEEEEeCCCCccccchhhhc
Confidence 345567899999999999876 36666655
|
| >3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=7.8e-07 Score=90.17 Aligned_cols=113 Identities=15% Similarity=0.209 Sum_probs=82.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHHC--CCeEE-EEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCc
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDH--GFTVV-AYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGS 80 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~--G~~V~-v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~ 80 (490)
++||||||+|.||..++..|.+. +++++ ++|+++++.+.+.+... +..+++++++++. +.+|+|++|+|+..
T Consensus 13 ~~rvgiiG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~~~~~~----~~~~~~~~~ll~~-~~~D~V~i~tp~~~ 87 (354)
T 3q2i_A 13 KIRFALVGCGRIANNHFGALEKHADRAELIDVCDIDPAALKAAVERTG----ARGHASLTDMLAQ-TDADIVILTTPSGL 87 (354)
T ss_dssp CEEEEEECCSTTHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHHC----CEEESCHHHHHHH-CCCSEEEECSCGGG
T ss_pred cceEEEEcCcHHHHHHHHHHHhCCCCeEEEEEEcCCHHHHHHHHHHcC----CceeCCHHHHhcC-CCCCEEEECCCcHH
Confidence 46899999999999999999987 77865 89999999988876532 3468999999874 34899999999975
Q ss_pred hHHHHHHhhcccCCCCC-EEEcCC-CCChHHHHHHHHHHHHcccccc
Q psy9637 81 AVDDFIDKLVPLLEKGD-IIIDGG-NSEYQDTDRRSKALEAKGLLYV 125 (490)
Q Consensus 81 ~v~~vl~~l~~~l~~g~-iiId~s-~~~~~~~~~~~~~l~~~gi~~l 125 (490)
..+.+.. + +..|. ++++-- +....+..++.+..+++|+.+.
T Consensus 88 h~~~~~~-a---l~~gk~v~~EKP~a~~~~~~~~l~~~a~~~g~~~~ 130 (354)
T 3q2i_A 88 HPTQSIE-C---SEAGFHVMTEKPMATRWEDGLEMVKAADKAKKHLF 130 (354)
T ss_dssp HHHHHHH-H---HHTTCEEEECSSSCSSHHHHHHHHHHHHHHTCCEE
T ss_pred HHHHHHH-H---HHCCCCEEEeCCCcCCHHHHHHHHHHHHHhCCeEE
Confidence 4443333 3 33454 444432 3345677777777777776553
|
| >1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=98.46 E-value=5.1e-07 Score=90.46 Aligned_cols=95 Identities=17% Similarity=0.242 Sum_probs=68.4
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC--eEEEEeCChHHHHHHHHc---ccC---CCCeeccCCHHHHHhhCCCCcEEEEec
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGF--TVVAYNRTTAKVDSFLAN---EAK---GTNIIGAHSLEELVKNLKKPRRVMMLV 76 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~---g~~---~~~i~~~~s~~e~v~~l~~~dvIil~v 76 (490)
|||+|||+|.||.++|..|+.+|+ +|++||+++++++.+... +.. ..++.. ++. +. ++.+|+||+++
T Consensus 1 mkI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~i~~-~d~-~~---~~~aDvViiav 75 (319)
T 1a5z_A 1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYA-GDY-AD---LKGSDVVIVAA 75 (319)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEE-CCG-GG---GTTCSEEEECC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHHHHHhhhhhcCCcEEEe-CCH-HH---hCCCCEEEEcc
Confidence 589999999999999999999999 999999999887765421 110 112332 343 33 34499999999
Q ss_pred CCCch---------------HHHHHHhhcccCCCCCEEEcCCCC
Q psy9637 77 KAGSA---------------VDDFIDKLVPLLEKGDIIIDGGNS 105 (490)
Q Consensus 77 p~~~~---------------v~~vl~~l~~~l~~g~iiId~s~~ 105 (490)
|.+.. ++++++.+.++. ++.+||..+|.
T Consensus 76 ~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-~~~~ii~~tNp 118 (319)
T 1a5z_A 76 GVPQKPGETRLQLLGRNARVMKEIARNVSKYA-PDSIVIVVTNP 118 (319)
T ss_dssp CCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECSSS
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeCCc
Confidence 97542 456667777664 67777778774
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=98.45 E-value=3.8e-07 Score=91.35 Aligned_cols=105 Identities=20% Similarity=0.189 Sum_probs=79.6
Q ss_pred ceeecCCCCcchhHHhhhhHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhccCcchhHHHHHHHHHhcccCC-CCCc
Q psy9637 349 CDWVGEQGAGHFVKMVHNGIEYGDMQLICEAYHLMTGALGMSHDEMSAVFEDWNKGELDSFLIEITKDILKFKDT-DGAP 427 (490)
Q Consensus 349 ~~~~g~~g~gh~vkmvhngiey~~m~~~~E~~~~~~~~~~~~~~~~~~~~~~w~~g~~~s~l~~~~~~~~~~~~~-~~~~ 427 (490)
+.|+|+.|+||.+|+++|.+.+++|++++|++.++++ .|+ |..++++.++.+...||+++.....+...|- .|.
T Consensus 186 ~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~~~-~G~---d~~~~~~~~~~~~~~s~~~~~~~~~~l~~~~~~gf- 260 (320)
T 4dll_A 186 ATHVGPHGSGQLTKLANQMIVGITIGAVAEALLFATK-GGA---DMAKVKEAITGGFADSRVLQLHGQRMVERDFAPRA- 260 (320)
T ss_dssp EEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSC---CHHHHHHHHTTSTTCBHHHHTHHHHHHTTCCCCSS-
T ss_pred EEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCC---CHHHHHHHHHcccccCHHHHHhhhhhccCCCCCcc-
Confidence 4578999999999999999999999999999999997 888 5677777888888889998876544432332 222
Q ss_pred chhhhccccCCCcchHHHHHHHHhcCCCchhhHHHHH
Q psy9637 428 LVEKIKDYAGQKGTGKWTAISALDYGVPVTLIGESVF 464 (490)
Q Consensus 428 ~l~~i~~~~~~~g~g~w~~~~a~~~~~p~~~i~~a~~ 464 (490)
.++.... .-+..++.|.++|+|+|++..+..
T Consensus 261 ~~~~~~K------Dl~~~~~~a~~~g~~~p~~~~~~~ 291 (320)
T 4dll_A 261 RLSIQLK------DMRNALATAQEIGFDAPITGLFEQ 291 (320)
T ss_dssp BHHHHHH------HHHHHHHHHHHTTCCCHHHHHHHH
T ss_pred cHHHHHH------HHHHHHHHHHHcCCCChHHHHHHH
Confidence 2222221 234788999999999998877543
|
| >3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=8.8e-07 Score=89.76 Aligned_cols=136 Identities=12% Similarity=0.102 Sum_probs=93.5
Q ss_pred CCcEEEEcccHHHH-HHHHHHHHC-CCeEE-EEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCc
Q psy9637 4 KGDIGLIGLAVMGQ-NLILNMNDH-GFTVV-AYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGS 80 (490)
Q Consensus 4 ~~~IgiIGlG~MG~-~lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~ 80 (490)
++||||||+|.||. .++..|.+. +++|+ ++|+++++.+.+.+... +..+++++++++. +.+|+|++|+|+..
T Consensus 27 ~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g----~~~~~~~~~ll~~-~~~D~V~i~tp~~~ 101 (350)
T 3rc1_A 27 PIRVGVIGCADIAWRRALPALEAEPLTEVTAIASRRWDRAKRFTERFG----GEPVEGYPALLER-DDVDAVYVPLPAVL 101 (350)
T ss_dssp CEEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEESSHHHHHHHHHHHC----SEEEESHHHHHTC-TTCSEEEECCCGGG
T ss_pred ceEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEcCCHHHHHHHHHHcC----CCCcCCHHHHhcC-CCCCEEEECCCcHH
Confidence 36899999999998 799999887 77876 88999999998876532 2346899999874 34899999999975
Q ss_pred hHHHHHHhhcccCCCCC-EEEcCC-CCChHHHHHHHHHHHHccccccccCCCCCccccccCCccCCCCCcchHHHHHHHH
Q psy9637 81 AVDDFIDKLVPLLEKGD-IIIDGG-NSEYQDTDRRSKALEAKGLLYVGCGVSGGEDGARYGPSLMPGGNPAAWPALKPIF 158 (490)
Q Consensus 81 ~v~~vl~~l~~~l~~g~-iiId~s-~~~~~~~~~~~~~l~~~gi~~ld~~vsGg~~~a~~G~~im~GG~~~a~~~v~~ll 158 (490)
..+.+.. + +..|+ ++++-- +....+..++.+.++++|+.+.-.... +. ...+..++.++
T Consensus 102 h~~~~~~-a---l~aGk~Vl~EKP~a~~~~ea~~l~~~a~~~g~~~~v~~~~------R~---------~p~~~~~k~~i 162 (350)
T 3rc1_A 102 HAEWIDR-A---LRAGKHVLAEKPLTTDRPQAERLFAVARERGLLLMENFMF------LH---------HPQHRQVADML 162 (350)
T ss_dssp HHHHHHH-H---HHTTCEEEEESSSCSSHHHHHHHHHHHHHTTCCEEEECGG------GG---------CTHHHHHHHHH
T ss_pred HHHHHHH-H---HHCCCcEEEeCCCCCCHHHHHHHHHHHHHhCCEEEEEecc------cC---------CHHHHHHHHHH
Confidence 5444433 3 23454 555532 345677777778877777755322210 00 13567788888
Q ss_pred H--hhCC
Q psy9637 159 Q--KLNP 163 (490)
Q Consensus 159 ~--~l~~ 163 (490)
+ .+|.
T Consensus 163 ~~G~iG~ 169 (350)
T 3rc1_A 163 DEGVIGE 169 (350)
T ss_dssp HTTTTCS
T ss_pred hcCCCCC
Confidence 7 4554
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=1e-06 Score=88.74 Aligned_cols=98 Identities=12% Similarity=0.146 Sum_probs=72.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHc-------ccCCCCeeccCCHHHHHhhCCCCcEEEEe
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGF-TVVAYNRTTAKVDSFLAN-------EAKGTNIIGAHSLEELVKNLKKPRRVMML 75 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~-------g~~~~~i~~~~s~~e~v~~l~~~dvIil~ 75 (490)
+|||+|||+|.||.++|..|+.+|+ +|++||+++++++..... .....++..++++++.++. +|+||++
T Consensus 9 ~~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~ea~~~---aDiVi~a 85 (331)
T 1pzg_A 9 RKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTG---ADCVIVT 85 (331)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTT---CSEEEEC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECChhHHHHHHHHHHhhhhccCCCCEEEEeCCHHHHhCC---CCEEEEc
Confidence 3689999999999999999999999 999999999877762211 1113456667888876665 9999999
Q ss_pred c--CCCc------------------hHHHHHHhhcccCCCCCEEEcCCCC
Q psy9637 76 V--KAGS------------------AVDDFIDKLVPLLEKGDIIIDGGNS 105 (490)
Q Consensus 76 v--p~~~------------------~v~~vl~~l~~~l~~g~iiId~s~~ 105 (490)
+ |... .++++++.+.++. |+.++|..||.
T Consensus 86 ~g~p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~vi~~tNP 134 (331)
T 1pzg_A 86 AGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYC-PKTFIIVVTNP 134 (331)
T ss_dssp CSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHC-TTCEEEECCSS
T ss_pred cCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCcEEEEEcCc
Confidence 9 4321 1456666777665 77888888773
|
| >1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=6.4e-07 Score=89.39 Aligned_cols=95 Identities=17% Similarity=0.211 Sum_probs=67.8
Q ss_pred CcEEEEcccHHHHHHHHHHHHC--CCeEEEEeCChHHHHHHHH---cc----cCCCCeeccCCHHHHHhhCCCCcEEEEe
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDH--GFTVVAYNRTTAKVDSFLA---NE----AKGTNIIGAHSLEELVKNLKKPRRVMML 75 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~--G~~V~v~dr~~~~~~~l~~---~g----~~~~~i~~~~s~~e~v~~l~~~dvIil~ 75 (490)
|||+|||+|.||.++|..|+.+ |++|++||+++++++.... .. ....++..++++++ ++. +|+||++
T Consensus 1 mkI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~~-l~~---aDvViia 76 (310)
T 1guz_A 1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYAD-TAN---SDIVIIT 76 (310)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGG-GTT---CSEEEEC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHhHHhhhhcccCCcEEEECCCHHH-HCC---CCEEEEe
Confidence 5899999999999999999985 7999999999988775432 11 01223555567765 444 9999999
Q ss_pred cCCCc---------------hHHHHHHhhcccCCCCCEEEcCCC
Q psy9637 76 VKAGS---------------AVDDFIDKLVPLLEKGDIIIDGGN 104 (490)
Q Consensus 76 vp~~~---------------~v~~vl~~l~~~l~~g~iiId~s~ 104 (490)
+|.+. .++++.+.+.++. ++.+||..+|
T Consensus 77 v~~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-~~~~viv~tN 119 (310)
T 1guz_A 77 AGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHS-KNPIIIVVSN 119 (310)
T ss_dssp CSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-SSCEEEECCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEEcC
Confidence 97642 1245556666664 6667777766
|
| >3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=8.5e-08 Score=94.15 Aligned_cols=109 Identities=17% Similarity=0.110 Sum_probs=74.3
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCch--
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGF-TVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSA-- 81 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~-- 81 (490)
+++.|||+|.||.+++..|++.|+ +|+++||++++.+++.+... ..+.+++.+.++.+|+||.++|.+..
T Consensus 118 k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~-------~~~~~~~~~~~~~aDiVInaTp~Gm~~~ 190 (277)
T 3don_A 118 AYILILGAGGASKGIANELYKIVRPTLTVANRTMSRFNNWSLNIN-------KINLSHAESHLDEFDIIINTTPAGMNGN 190 (277)
T ss_dssp CCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCGGGGTTCCSCCE-------EECHHHHHHTGGGCSEEEECCC------
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhcc-------cccHhhHHHHhcCCCEEEECccCCCCCC
Confidence 579999999999999999999999 89999999988776653211 12333333323349999999998621
Q ss_pred HHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccc
Q psy9637 82 VDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLY 124 (490)
Q Consensus 82 v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ 124 (490)
++..+ -...++++.+|+|+... |..| ...+..+++|+..
T Consensus 191 ~~~~l--~~~~l~~~~~V~D~vY~-P~~T-~ll~~A~~~G~~~ 229 (277)
T 3don_A 191 TDSVI--SLNRLASHTLVSDIVYN-PYKT-PILIEAEQRGNPI 229 (277)
T ss_dssp -CCSS--CCTTCCSSCEEEESCCS-SSSC-HHHHHHHHTTCCE
T ss_pred CcCCC--CHHHcCCCCEEEEecCC-CCCC-HHHHHHHHCcCEE
Confidence 11111 12457889999999876 4444 3556677777644
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=98.42 E-value=7.6e-07 Score=87.53 Aligned_cols=104 Identities=16% Similarity=0.251 Sum_probs=79.3
Q ss_pred ceeecCCCCcchhHHhhhhHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhccCcchhHHHHHHHHHhcccCCCCCcc
Q psy9637 349 CDWVGEQGAGHFVKMVHNGIEYGDMQLICEAYHLMTGALGMSHDEMSAVFEDWNKGELDSFLIEITKDILKFKDTDGAPL 428 (490)
Q Consensus 349 ~~~~g~~g~gh~vkmvhngiey~~m~~~~E~~~~~~~~~~~~~~~~~~~~~~w~~g~~~s~l~~~~~~~~~~~~~~~~~~ 428 (490)
+.++|+.|+||.+|+++|.+.++++++++|++.+++. .|+ |...+++.++.|...||+++.....+...|......
T Consensus 158 ~~~~g~~g~~~~~Kl~~N~~~~~~~~~~~E~~~l~~~-~G~---d~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 233 (287)
T 3pef_A 158 IIHLGDVGKGAEMKLVVNMVMGGMMACFCEGLALGEK-AGL---ATDAILDVIGAGAMANPMFALKGGLIRDRNFAPAFP 233 (287)
T ss_dssp EEECSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTC---CHHHHHHHHHHSTTCCHHHHHHHHHHHTTCCCCSSB
T ss_pred eEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCC---CHHHHHHHHHhcccccHHHHHHhhhhhcCCCCCCCc
Confidence 4578999999999999999999999999999999997 888 556666677777778888876665544333211122
Q ss_pred hhhhccccCCCcchHHHHHHHHhcCCCchhhHHH
Q psy9637 429 VEKIKDYAGQKGTGKWTAISALDYGVPVTLIGES 462 (490)
Q Consensus 429 l~~i~~~~~~~g~g~w~~~~a~~~~~p~~~i~~a 462 (490)
++.... ..++.++.|.++|+|+|++..+
T Consensus 234 ~~~~~k------d~~~~~~~a~~~g~~~p~~~~~ 261 (287)
T 3pef_A 234 LKHMQK------DLRLAVALGDRVGQPLVASAAA 261 (287)
T ss_dssp HHHHHH------HHHHHHHHHHHHTCCCHHHHHH
T ss_pred hHHHHH------HHHHHHHHHHHcCCCChHHHHH
Confidence 332222 3679999999999999988776
|
| >2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens} | Back alignment and structure |
|---|
Probab=98.41 E-value=1.5e-06 Score=86.98 Aligned_cols=132 Identities=16% Similarity=0.168 Sum_probs=90.5
Q ss_pred CcEEEEcccHHHHHH-HHHHHHCCCeEE-EEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchH
Q psy9637 5 GDIGLIGLAVMGQNL-ILNMNDHGFTVV-AYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAV 82 (490)
Q Consensus 5 ~~IgiIGlG~MG~~l-A~~L~~~G~~V~-v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v 82 (490)
+||||||+|.||..+ +..|.+.+++|+ ++|+++++.+.+.+.... ...+++++++++. +.+|+|++++|+...
T Consensus 1 ~~vgiiG~G~~g~~~~~~~l~~~~~~~vav~d~~~~~~~~~~~~~g~---~~~~~~~~~~l~~-~~~D~V~i~tp~~~h- 75 (332)
T 2glx_A 1 NRWGLIGASTIAREWVIGAIRATGGEVVSMMSTSAERGAAYATENGI---GKSVTSVEELVGD-PDVDAVYVSTTNELH- 75 (332)
T ss_dssp CEEEEESCCHHHHHTHHHHHHHTTCEEEEEECSCHHHHHHHHHHTTC---SCCBSCHHHHHTC-TTCCEEEECSCGGGH-
T ss_pred CeEEEEcccHHHHHhhhHHhhcCCCeEEEEECCCHHHHHHHHHHcCC---CcccCCHHHHhcC-CCCCEEEEeCChhHh-
Confidence 489999999999998 888888888865 799999998887765321 1247889998863 248999999998644
Q ss_pred HHHHHhhcccCCCCC-EEEcC-CCCChHHHHHHHHHHHHccccccccCCCCCccccccCCccCCCCCcchHHHHHHHHH
Q psy9637 83 DDFIDKLVPLLEKGD-IIIDG-GNSEYQDTDRRSKALEAKGLLYVGCGVSGGEDGARYGPSLMPGGNPAAWPALKPIFQ 159 (490)
Q Consensus 83 ~~vl~~l~~~l~~g~-iiId~-s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg~~~a~~G~~im~GG~~~a~~~v~~ll~ 159 (490)
.+++..+ ++.|+ ++++. .+....+..++.+.++++|+.+..+....- ...+..++.+++
T Consensus 76 ~~~~~~a---l~~Gk~v~~ekP~~~~~~~~~~l~~~a~~~g~~~~~~~~~r~---------------~p~~~~~~~~i~ 136 (332)
T 2glx_A 76 REQTLAA---IRAGKHVLCEKPLAMTLEDAREMVVAAREAGVVLGTNHHLRN---------------AAAHRAMRDAIA 136 (332)
T ss_dssp HHHHHHH---HHTTCEEEECSSSCSSHHHHHHHHHHHHHHTCCEEECCCGGG---------------SHHHHHHHHHHH
T ss_pred HHHHHHH---HHCCCeEEEeCCCcCCHHHHHHHHHHHHHcCCEEEEeehhhc---------------CHHHHHHHHHHH
Confidence 3343333 34566 56653 334567777777777777876554432211 224667777776
|
| >2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=98.41 E-value=7.8e-07 Score=89.47 Aligned_cols=95 Identities=15% Similarity=0.225 Sum_probs=69.2
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHH---cc----cCCCCeeccCCHHHHHhhCCCCcEEEEec
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGF-TVVAYNRTTAKVDSFLA---NE----AKGTNIIGAHSLEELVKNLKKPRRVMMLV 76 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~---~g----~~~~~i~~~~s~~e~v~~l~~~dvIil~v 76 (490)
+||+|||+|.||.++|..|+.+|+ +|++||+++++++.... .. ....++..++++ +.++. +|+||+++
T Consensus 15 ~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~~---aD~VI~av 90 (328)
T 2hjr_A 15 KKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIEGVPQGKALDLNHCMALIGSPAKIFGENNY-EYLQN---SDVVIITA 90 (328)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTT---CSEEEECC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhHhhccCCCCEEEECCCH-HHHCC---CCEEEEcC
Confidence 689999999999999999999999 99999999988774221 10 112356666676 44444 99999999
Q ss_pred CCCc---------------hHHHHHHhhcccCCCCCEEEcCCC
Q psy9637 77 KAGS---------------AVDDFIDKLVPLLEKGDIIIDGGN 104 (490)
Q Consensus 77 p~~~---------------~v~~vl~~l~~~l~~g~iiId~s~ 104 (490)
+.+. .+++++..+.+.. |+.++|..||
T Consensus 91 g~p~k~g~tr~dl~~~n~~i~~~i~~~i~~~~-p~a~viv~tN 132 (328)
T 2hjr_A 91 GVPRKPNMTRSDLLTVNAKIVGSVAENVGKYC-PNAFVICITN 132 (328)
T ss_dssp SCCCCTTCCSGGGHHHHHHHHHHHHHHHHHHC-TTCEEEECCS
T ss_pred CCCCCCCCchhhHHhhhHHHHHHHHHHHHHHC-CCeEEEEecC
Confidence 4331 2455666676665 7778877877
|
| >3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=1.7e-06 Score=87.21 Aligned_cols=114 Identities=11% Similarity=0.135 Sum_probs=82.7
Q ss_pred CCcEEEEcccHHHHHHHHHHH-H-CCCeEE-EEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCc
Q psy9637 4 KGDIGLIGLAVMGQNLILNMN-D-HGFTVV-AYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGS 80 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~-~-~G~~V~-v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~ 80 (490)
++||||||+|.||..++..|. + .+++|+ ++|+++++.+.+.+.... ....+++++++++. +++|+|++|+|+..
T Consensus 2 ~~rigiIG~G~~g~~~~~~l~~~~~~~~l~av~d~~~~~~~~~~~~~g~--~~~~~~~~~~ll~~-~~~D~V~i~tp~~~ 78 (344)
T 3mz0_A 2 SLRIGVIGTGAIGKEHINRITNKLSGAEIVAVTDVNQEAAQKVVEQYQL--NATVYPNDDSLLAD-ENVDAVLVTSWGPA 78 (344)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTCSSEEEEEEECSSHHHHHHHHHHTTC--CCEEESSHHHHHHC-TTCCEEEECSCGGG
T ss_pred eEEEEEECccHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCC--CCeeeCCHHHHhcC-CCCCEEEECCCchh
Confidence 368999999999999999998 4 477766 799999999988765321 12468999999875 34799999999975
Q ss_pred hHHHHHHhhcccCCCCC-EEEcCC-CCChHHHHHHHHHHHHccccc
Q psy9637 81 AVDDFIDKLVPLLEKGD-IIIDGG-NSEYQDTDRRSKALEAKGLLY 124 (490)
Q Consensus 81 ~v~~vl~~l~~~l~~g~-iiId~s-~~~~~~~~~~~~~l~~~gi~~ 124 (490)
..+.+.. + ++.|+ ++++-- +....+..++.+.++++|+.+
T Consensus 79 h~~~~~~-a---l~~Gk~vl~EKP~a~~~~e~~~l~~~a~~~g~~~ 120 (344)
T 3mz0_A 79 HESSVLK-A---IKAQKYVFCEKPLATTAEGCMRIVEEEIKVGKRL 120 (344)
T ss_dssp HHHHHHH-H---HHTTCEEEECSCSCSSHHHHHHHHHHHHHHSSCC
T ss_pred HHHHHHH-H---HHCCCcEEEcCCCCCCHHHHHHHHHHHHHHCCEE
Confidence 5444433 2 33455 555543 345677777777777777755
|
| >2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043} | Back alignment and structure |
|---|
Probab=98.39 E-value=1.1e-06 Score=88.39 Aligned_cols=115 Identities=16% Similarity=0.175 Sum_probs=82.7
Q ss_pred CCCCCcEEEEcccHHHH-HHHHHHHHCCCeE-EEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCC
Q psy9637 1 MAAKGDIGLIGLAVMGQ-NLILNMNDHGFTV-VAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKA 78 (490)
Q Consensus 1 M~~~~~IgiIGlG~MG~-~lA~~L~~~G~~V-~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~ 78 (490)
|+ ++||||||+|.||. .++..|...+++| .++|+++++.+.+.+... .+..+++++++++. ++.|+|++|+|+
T Consensus 2 M~-~~rvgiiG~G~~~~~~~~~~l~~~~~~lvav~d~~~~~~~~~a~~~~---~~~~~~~~~~ll~~-~~~D~V~i~tp~ 76 (336)
T 2p2s_A 2 MK-KIRFAAIGLAHNHIYDMCQQLIDAGAELAGVFESDSDNRAKFTSLFP---SVPFAASAEQLITD-ASIDLIACAVIP 76 (336)
T ss_dssp ---CCEEEEECCSSTHHHHHHHHHHHTTCEEEEEECSCTTSCHHHHHHST---TCCBCSCHHHHHTC-TTCCEEEECSCG
T ss_pred CC-ccEEEEECCChHHHHHhhhhhcCCCcEEEEEeCCCHHHHHHHHHhcC---CCcccCCHHHHhhC-CCCCEEEEeCCh
Confidence 53 47999999999996 6888887788986 589999999888876531 12367899999874 248999999999
Q ss_pred CchHHHHHHhhcccCCCCC-EEEcC-CCCChHHHHHHHHHHHHccccc
Q psy9637 79 GSAVDDFIDKLVPLLEKGD-IIIDG-GNSEYQDTDRRSKALEAKGLLY 124 (490)
Q Consensus 79 ~~~v~~vl~~l~~~l~~g~-iiId~-s~~~~~~~~~~~~~l~~~gi~~ 124 (490)
....+.++.. |+.|+ ++++- .+....+..++.+.++++|+.+
T Consensus 77 ~~h~~~~~~a----l~aGkhVl~EKP~a~~~~e~~~l~~~a~~~g~~~ 120 (336)
T 2p2s_A 77 CDRAELALRT----LDAGKDFFTAKPPLTTLEQLDAVQRRVAETGRKF 120 (336)
T ss_dssp GGHHHHHHHH----HHTTCEEEECSSCCSCHHHHHHHHHHHHHHCCCE
T ss_pred hhHHHHHHHH----HHCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCEE
Confidence 7555444432 34565 66664 3445677777777777777654
|
| >3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis} | Back alignment and structure |
|---|
Probab=98.38 E-value=3.9e-07 Score=91.03 Aligned_cols=112 Identities=12% Similarity=0.109 Sum_probs=79.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHHC--CCeEEEEeCChHHHHHHHHccc--CCCCeeccCCHHHHHhhCCCCcEEEEecCCC
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDH--GFTVVAYNRTTAKVDSFLANEA--KGTNIIGAHSLEELVKNLKKPRRVMMLVKAG 79 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~--G~~V~v~dr~~~~~~~l~~~g~--~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~ 79 (490)
.++|+|||+|.||..++..|.+. ..+|.+|||+ +.+++.+.-. .+..+..+ ++++++.. +|+|++|+|..
T Consensus 121 ~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~--~a~~la~~l~~~~g~~~~~~-~~~eav~~---aDIVi~aT~s~ 194 (313)
T 3hdj_A 121 SSVLGLFGAGTQGAEHAAQLSARFALEAILVHDPY--ASPEILERIGRRCGVPARMA-APADIAAQ---ADIVVTATRST 194 (313)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECTT--CCHHHHHHHHHHHTSCEEEC-CHHHHHHH---CSEEEECCCCS
T ss_pred CcEEEEECccHHHHHHHHHHHHhCCCcEEEEECCc--HHHHHHHHHHHhcCCeEEEe-CHHHHHhh---CCEEEEccCCC
Confidence 35799999999999999999863 4689999999 5555544210 01234456 99999988 99999999986
Q ss_pred chHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcc-cccccc
Q psy9637 80 SAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKG-LLYVGC 127 (490)
Q Consensus 80 ~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~g-i~~ld~ 127 (490)
.++ +. .+.+++|.+|++.|+..|.. ++....+..+. ..|+|.
T Consensus 195 ~pv---l~--~~~l~~G~~V~~vGs~~p~~-~El~~~~~~~a~~v~vD~ 237 (313)
T 3hdj_A 195 TPL---FA--GQALRAGAFVGAIGSSLPHT-RELDDEALRRARAVVVEW 237 (313)
T ss_dssp SCS---SC--GGGCCTTCEEEECCCSSTTC-CCCCHHHHHHCSEEEESC
T ss_pred Ccc---cC--HHHcCCCcEEEECCCCCCch-hhcCHHHHhcCCEEEECC
Confidence 432 22 24688999999999977643 33333444444 567884
|
| >3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=5.9e-07 Score=94.65 Aligned_cols=97 Identities=9% Similarity=0.060 Sum_probs=74.2
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
++|||||+|.||..+|++|...|.+|++|||++.+.......+.. ..++++++.. +|+|++++.+...+.
T Consensus 278 ktVgIIG~G~IG~~vA~~l~~~G~~V~v~d~~~~~~~~a~~~G~~------~~~l~ell~~---aDiVi~~~~t~~lI~- 347 (494)
T 3d64_A 278 KIAVVAGYGDVGKGCAQSLRGLGATVWVTEIDPICALQAAMEGYR------VVTMEYAADK---ADIFVTATGNYHVIN- 347 (494)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEECSCHHHHHHHHTTTCE------ECCHHHHTTT---CSEEEECSSSSCSBC-
T ss_pred CEEEEEccCHHHHHHHHHHHHCCCEEEEEeCChHhHHHHHHcCCE------eCCHHHHHhc---CCEEEECCCcccccC-
Confidence 689999999999999999999999999999998875443333332 4578888776 999999985432221
Q ss_pred HHHhhcccCCCCCEEEcCCCCChH-HHHHH
Q psy9637 85 FIDKLVPLLEKGDIIIDGGNSEYQ-DTDRR 113 (490)
Q Consensus 85 vl~~l~~~l~~g~iiId~s~~~~~-~~~~~ 113 (490)
.+.+..+++|.+|||.+..... +...+
T Consensus 348 --~~~l~~MK~gAilINvgrg~veID~~aL 375 (494)
T 3d64_A 348 --HDHMKAMRHNAIVCNIGHFDSEIDVAST 375 (494)
T ss_dssp --HHHHHHCCTTEEEEECSSSSCSBCCGGG
T ss_pred --HHHHhhCCCCcEEEEcCCCcchhchHHH
Confidence 3455678899999999987653 54444
|
| >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* | Back alignment and structure |
|---|
Probab=98.38 E-value=9.4e-07 Score=88.12 Aligned_cols=98 Identities=15% Similarity=0.263 Sum_probs=68.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCC--eEEEEeCChHHHHH--HH-HcccC---CCCeeccCCHHHHHhhCCCCcEEEEe
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGF--TVVAYNRTTAKVDS--FL-ANEAK---GTNIIGAHSLEELVKNLKKPRRVMML 75 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~--~V~v~dr~~~~~~~--l~-~~g~~---~~~i~~~~s~~e~v~~l~~~dvIil~ 75 (490)
+|||+|||+|.||..+|..|+.+|+ +|+++|+++++++. +. ..+.. ..++...++.+ . ++.+|+||++
T Consensus 7 ~mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~---~~~aD~Vii~ 82 (319)
T 1lld_A 7 PTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDPE-I---CRDADMVVIT 82 (319)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCGG-G---GTTCSEEEEC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHhhhhhcCCeEEEeCCCHH-H---hCCCCEEEEC
Confidence 4799999999999999999999999 99999999877662 21 22211 11232233433 2 3349999999
Q ss_pred cCCCc---------------hHHHHHHhhcccCCCCCEEEcCCCCC
Q psy9637 76 VKAGS---------------AVDDFIDKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 76 vp~~~---------------~v~~vl~~l~~~l~~g~iiId~s~~~ 106 (490)
++... .+++++..+.+. .++.+||..+|..
T Consensus 83 v~~~~~~g~~r~~~~~~n~~~~~~~~~~i~~~-~~~~~vi~~~Np~ 127 (319)
T 1lld_A 83 AGPRQKPGQSRLELVGATVNILKAIMPNLVKV-APNAIYMLITNPV 127 (319)
T ss_dssp CCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CTTSEEEECCSSH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCceEEEecCch
Confidence 96542 122566777664 6788898888853
|
| >3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=7.7e-07 Score=91.97 Aligned_cols=91 Identities=11% Similarity=0.147 Sum_probs=73.0
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
++|+|||+|.+|..+|.+|...|.+|++||+++.+.......+.. ..++++++.. +|+|+++..+...+.
T Consensus 212 ktVgIiG~G~IG~~vA~~Lka~Ga~Viv~D~~p~~a~~A~~~G~~------~~sL~eal~~---ADVVilt~gt~~iI~- 281 (436)
T 3h9u_A 212 KTACVCGYGDVGKGCAAALRGFGARVVVTEVDPINALQAAMEGYQ------VLLVEDVVEE---AHIFVTTTGNDDIIT- 281 (436)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCE------ECCHHHHTTT---CSEEEECSSCSCSBC-
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEECCChhhhHHHHHhCCe------ecCHHHHHhh---CCEEEECCCCcCccC-
Confidence 589999999999999999999999999999999877665555432 4688888887 999998665432222
Q ss_pred HHHhhcccCCCCCEEEcCCCCCh
Q psy9637 85 FIDKLVPLLEKGDIIIDGGNSEY 107 (490)
Q Consensus 85 vl~~l~~~l~~g~iiId~s~~~~ 107 (490)
.+.+..+++|.+||+.+...+
T Consensus 282 --~e~l~~MK~gAIVINvgRg~v 302 (436)
T 3h9u_A 282 --SEHFPRMRDDAIVCNIGHFDT 302 (436)
T ss_dssp --TTTGGGCCTTEEEEECSSSGG
T ss_pred --HHHHhhcCCCcEEEEeCCCCC
Confidence 356677899999999998654
|
| >3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua} | Back alignment and structure |
|---|
Probab=98.37 E-value=2e-06 Score=87.37 Aligned_cols=111 Identities=14% Similarity=0.154 Sum_probs=79.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHHC-CCeEE-EEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCch
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDH-GFTVV-AYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSA 81 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~ 81 (490)
++||||||+|.||..++..|.+. +++|+ ++|+++++.+...+.+ +..++|++++++. +..|+|++|+|+...
T Consensus 5 ~~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~a~~~g-----~~~~~~~~~ll~~-~~~D~V~i~tp~~~h 78 (359)
T 3e18_A 5 KYQLVIVGYGGMGSYHVTLASAADNLEVHGVFDILAEKREAAAQKG-----LKIYESYEAVLAD-EKVDAVLIATPNDSH 78 (359)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTSTTEEEEEEECSSHHHHHHHHTTT-----CCBCSCHHHHHHC-TTCCEEEECSCGGGH
T ss_pred cCcEEEECcCHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHhcC-----CceeCCHHHHhcC-CCCCEEEEcCCcHHH
Confidence 46899999999999999999876 67775 7899999887543333 3468999999974 348999999999755
Q ss_pred HHHHHHhhcccCCCCC-EEEcCC-CCChHHHHHHHHHHHHccccc
Q psy9637 82 VDDFIDKLVPLLEKGD-IIIDGG-NSEYQDTDRRSKALEAKGLLY 124 (490)
Q Consensus 82 v~~vl~~l~~~l~~g~-iiId~s-~~~~~~~~~~~~~l~~~gi~~ 124 (490)
.+.+.. . |+.|+ ++++-- +....+..++.+.++++|+.+
T Consensus 79 ~~~~~~-a---l~aGkhVl~EKP~a~~~~ea~~l~~~a~~~g~~~ 119 (359)
T 3e18_A 79 KELAIS-A---LEAGKHVVCEKPVTMTSEDLLAIMDVAKRVNKHF 119 (359)
T ss_dssp HHHHHH-H---HHTTCEEEEESSCCSSHHHHHHHHHHHHHHTCCE
T ss_pred HHHHHH-H---HHCCCCEEeeCCCcCCHHHHHHHHHHHHHhCCeE
Confidence 444433 2 33455 555531 334577777778777777654
|
| >3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=98.37 E-value=1.8e-06 Score=87.66 Aligned_cols=113 Identities=15% Similarity=0.252 Sum_probs=81.7
Q ss_pred CcEEEEcccHHHHHHHHHHH-H-CCCeEE-EEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCch
Q psy9637 5 GDIGLIGLAVMGQNLILNMN-D-HGFTVV-AYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSA 81 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~-~-~G~~V~-v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~ 81 (490)
+||||||+|.||..++..|. + .+++|+ ++|+++++.+.+.+.... ....+++++++++. +.+|+|++|+|+...
T Consensus 24 ~rvgiIG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~g~--~~~~~~~~~~ll~~-~~~D~V~i~tp~~~h 100 (357)
T 3ec7_A 24 LKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIVAGRAQAALDKYAI--EAKDYNDYHDLIND-KDVEVVIITASNEAH 100 (357)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTCTTEEEEEEECSSTTHHHHHHHHHTC--CCEEESSHHHHHHC-TTCCEEEECSCGGGH
T ss_pred eeEEEECCcHHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHhCC--CCeeeCCHHHHhcC-CCCCEEEEcCCcHHH
Confidence 58999999999999999998 4 477766 799999999888765321 12468999999874 348999999999755
Q ss_pred HHHHHHhhcccCCCCC-EEEcCC-CCChHHHHHHHHHHHHccccc
Q psy9637 82 VDDFIDKLVPLLEKGD-IIIDGG-NSEYQDTDRRSKALEAKGLLY 124 (490)
Q Consensus 82 v~~vl~~l~~~l~~g~-iiId~s-~~~~~~~~~~~~~l~~~gi~~ 124 (490)
.+.+.. + +..|. ++++-- +....+..++.+.++++|+.+
T Consensus 101 ~~~~~~-a---l~aGk~Vl~EKPla~~~~e~~~l~~~a~~~g~~~ 141 (357)
T 3ec7_A 101 ADVAVA-A---LNANKYVFCEKPLAVTAADCQRVIEAEQKNGKRM 141 (357)
T ss_dssp HHHHHH-H---HHTTCEEEEESSSCSSHHHHHHHHHHHHHHTSCC
T ss_pred HHHHHH-H---HHCCCCEEeecCccCCHHHHHHHHHHHHHhCCeE
Confidence 444433 3 23454 555532 345677777778777777754
|
| >1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=98.36 E-value=1.5e-06 Score=86.75 Aligned_cols=112 Identities=24% Similarity=0.251 Sum_probs=78.9
Q ss_pred CCcEEEEcccHHHHH-HHHHHHH-CCCeEE-EEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCc
Q psy9637 4 KGDIGLIGLAVMGQN-LILNMND-HGFTVV-AYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGS 80 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~-lA~~L~~-~G~~V~-v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~ 80 (490)
++||||||+|.||.. ++..|.+ .+++|+ ++|+++++.+.+.+... +..+++++++.. .+|+|++++|+..
T Consensus 5 ~~~vgiiG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~g----~~~~~~~~~l~~---~~D~V~i~tp~~~ 77 (319)
T 1tlt_A 5 KLRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWR----IPYADSLSSLAA---SCDAVFVHSSTAS 77 (319)
T ss_dssp CEEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHT----CCBCSSHHHHHT---TCSEEEECSCTTH
T ss_pred cceEEEECCCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcC----CCccCcHHHhhc---CCCEEEEeCCchh
Confidence 468999999999997 8888876 477876 89999998888776532 124678877733 4899999999864
Q ss_pred hHHHHHHhhcccCCCCC-EEEcC-CCCChHHHHHHHHHHHHccccccc
Q psy9637 81 AVDDFIDKLVPLLEKGD-IIIDG-GNSEYQDTDRRSKALEAKGLLYVG 126 (490)
Q Consensus 81 ~v~~vl~~l~~~l~~g~-iiId~-s~~~~~~~~~~~~~l~~~gi~~ld 126 (490)
..+.+. .+ ++.|. ++++. .+....+..++.+.+++.|+.+..
T Consensus 78 h~~~~~-~a---l~~G~~v~~eKP~~~~~~~~~~l~~~a~~~g~~~~~ 121 (319)
T 1tlt_A 78 HFDVVS-TL---LNAGVHVCVDKPLAENLRDAERLVELAARKKLTLMV 121 (319)
T ss_dssp HHHHHH-HH---HHTTCEEEEESSSCSSHHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHHH-HH---HHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCeEEE
Confidence 444333 32 34565 66663 334567777777777777776543
|
| >3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.35 E-value=2.8e-07 Score=89.37 Aligned_cols=105 Identities=14% Similarity=0.134 Sum_probs=74.1
Q ss_pred cEEEEcccHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH-
Q psy9637 6 DIGLIGLAVMGQNLILNMNDHGF-TVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD- 83 (490)
Q Consensus 6 ~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~- 83 (490)
+|+|||+|.||.+++..|++.|. +|+++||++++.+++.+... ....+++.+.+.. +|+||.++|.+-.-+
T Consensus 110 ~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~~~ka~~la~~~~----~~~~~~~~~~~~~---aDiVInatp~gm~p~~ 182 (253)
T 3u62_A 110 PVVVVGAGGAARAVIYALLQMGVKDIWVVNRTIERAKALDFPVK----IFSLDQLDEVVKK---AKSLFNTTSVGMKGEE 182 (253)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCCEEEEESCHHHHHTCCSSCE----EEEGGGHHHHHHT---CSEEEECSSTTTTSCC
T ss_pred eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcc----cCCHHHHHhhhcC---CCEEEECCCCCCCCCC
Confidence 79999999999999999999998 89999999998887654321 1234566666666 899999998752110
Q ss_pred HHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccc
Q psy9637 84 DFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLL 123 (490)
Q Consensus 84 ~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~ 123 (490)
..+. ...++++.+|+|.... +. ...+..+++|++
T Consensus 183 ~~i~--~~~l~~~~~V~Divy~-~T---~ll~~A~~~G~~ 216 (253)
T 3u62_A 183 LPVS--DDSLKNLSLVYDVIYF-DT---PLVVKARKLGVK 216 (253)
T ss_dssp CSCC--HHHHTTCSEEEECSSS-CC---HHHHHHHHHTCS
T ss_pred CCCC--HHHhCcCCEEEEeeCC-Cc---HHHHHHHHCCCc
Confidence 0110 1235689999999876 32 233444556754
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=98.35 E-value=3.9e-07 Score=92.96 Aligned_cols=100 Identities=13% Similarity=0.162 Sum_probs=68.6
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCee-------cc----------CCHHHHHhhCC
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNII-------GA----------HSLEELVKNLK 67 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~-------~~----------~s~~e~v~~l~ 67 (490)
.+|+|||+|.||..+++.+...|.+|++||+++++.+.+.+.|.....+. .. ....++.+.++
T Consensus 185 ~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~lGa~~~~l~~~~~~~~gya~~~~~~~~~~~~~~l~e~l~ 264 (381)
T 3p2y_A 185 ASALVLGVGVAGLQALATAKRLGAKTTGYDVRPEVAEQVRSVGAQWLDLGIDAAGEGGYARELSEAERAQQQQALEDAIT 264 (381)
T ss_dssp CEEEEESCSHHHHHHHHHHHHHTCEEEEECSSGGGHHHHHHTTCEECCCC-------------CHHHHHHHHHHHHHHHT
T ss_pred CEEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccchhhhhHHHHhhhHHHHHHHHh
Confidence 58999999999999999999999999999999999888877554200000 00 01122333344
Q ss_pred CCcEEEEec--CCCchHHHHHHhhcccCCCCCEEEcCCC
Q psy9637 68 KPRRVMMLV--KAGSAVDDFIDKLVPLLEKGDIIIDGGN 104 (490)
Q Consensus 68 ~~dvIil~v--p~~~~v~~vl~~l~~~l~~g~iiId~s~ 104 (490)
.+|+||.++ |....-.-+-+++++.+++|.+|||++-
T Consensus 265 ~aDIVI~tv~iPg~~ap~Lvt~emv~~MkpGsVIVDvA~ 303 (381)
T 3p2y_A 265 KFDIVITTALVPGRPAPRLVTAAAATGMQPGSVVVDLAG 303 (381)
T ss_dssp TCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEETTG
T ss_pred cCCEEEECCCCCCcccceeecHHHHhcCCCCcEEEEEeC
Confidence 599999986 4321111112566667889999999974
|
| >3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum} | Back alignment and structure |
|---|
Probab=98.35 E-value=5.4e-07 Score=89.85 Aligned_cols=134 Identities=14% Similarity=0.214 Sum_probs=91.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHHC-CCeE-EEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCch
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDH-GFTV-VAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSA 81 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~-G~~V-~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~ 81 (490)
++||||||+|.||..++..|.+. ++++ .++|+++++.+.+.+. +..+++++++++. +.+|+|++++|+...
T Consensus 10 ~~~igiIG~G~~g~~~~~~l~~~~~~~~v~v~d~~~~~~~~~~~~------~~~~~~~~~~l~~-~~~D~V~i~tp~~~h 82 (315)
T 3c1a_A 10 PVRLALIGAGRWGKNYIRTIAGLPGAALVRLASSNPDNLALVPPG------CVIESDWRSVVSA-PEVEAVIIATPPATH 82 (315)
T ss_dssp CEEEEEEECTTTTTTHHHHHHHCTTEEEEEEEESCHHHHTTCCTT------CEEESSTHHHHTC-TTCCEEEEESCGGGH
T ss_pred cceEEEECCcHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHhh------CcccCCHHHHhhC-CCCCEEEEeCChHHH
Confidence 46899999999999999999986 6765 4899999887655432 3357889998852 238999999998644
Q ss_pred HHHHHHhhcccCCCCC-EEEcC-CCCChHHHHHHHHHHHHccccccccCCCCCccccccCCccCCCCCcchHHHHHHHHH
Q psy9637 82 VDDFIDKLVPLLEKGD-IIIDG-GNSEYQDTDRRSKALEAKGLLYVGCGVSGGEDGARYGPSLMPGGNPAAWPALKPIFQ 159 (490)
Q Consensus 82 v~~vl~~l~~~l~~g~-iiId~-s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg~~~a~~G~~im~GG~~~a~~~v~~ll~ 159 (490)
.+++..+ ++.|+ ++++- .+....+..++.+.++++|+.+..+.... -...+..++.+++
T Consensus 83 -~~~~~~a---l~~Gk~v~~eKP~~~~~~~~~~l~~~a~~~g~~~~~~~~~r---------------~~p~~~~~~~~i~ 143 (315)
T 3c1a_A 83 -AEITLAA---IASGKAVLVEKPLTLDLAEAEAVAAAAKATGVMVWVEHTQL---------------FNPAWEALKADLT 143 (315)
T ss_dssp -HHHHHHH---HHTTCEEEEESSSCSCHHHHHHHHHHHHHHCCCEEEECGGG---------------GCHHHHHHHHTHH
T ss_pred -HHHHHHH---HHCCCcEEEcCCCcCCHHHHHHHHHHHHHcCCEEEEeechh---------------cCHHHHHHHHHHH
Confidence 3443333 34565 56663 34456777777777777787654433211 0125667777777
Q ss_pred hhCC
Q psy9637 160 KLNP 163 (490)
Q Consensus 160 ~l~~ 163 (490)
.+|.
T Consensus 144 ~lG~ 147 (315)
T 3c1a_A 144 SIGP 147 (315)
T ss_dssp HHCS
T ss_pred HcCC
Confidence 7775
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.34 E-value=5.5e-07 Score=92.52 Aligned_cols=97 Identities=18% Similarity=0.155 Sum_probs=70.0
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCee------------c------------cCCHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNII------------G------------AHSLE 60 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~------------~------------~~s~~ 60 (490)
.+|+|||+|.||..+++.+...|.+|++||+++++.+.+.+.|.....+. . ..+++
T Consensus 191 ~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~~G~~~~~~~~~~~~d~~~~~~ya~e~s~~~~~~~~~~l~ 270 (405)
T 4dio_A 191 AKIFVMGAGVAGLQAIATARRLGAVVSATDVRPAAKEQVASLGAKFIAVEDEEFKAAETAGGYAKEMSGEYQVKQAALVA 270 (405)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSTTHHHHHHHTTCEECCCCC-----------------CHHHHHHHHHHH
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCceeecccccccccccccchhhhcchhhhhhhHhHHH
Confidence 58999999999999999999999999999999999888876554200000 0 11345
Q ss_pred HHHhhCCCCcEEEEec--CCCchHHHHHHhhcccCCCCCEEEcCCC
Q psy9637 61 ELVKNLKKPRRVMMLV--KAGSAVDDFIDKLVPLLEKGDIIIDGGN 104 (490)
Q Consensus 61 e~v~~l~~~dvIil~v--p~~~~v~~vl~~l~~~l~~g~iiId~s~ 104 (490)
+++.. +|+||.++ |...+..-+-++.+..+++|.+|||++.
T Consensus 271 e~l~~---aDVVI~tvlipg~~ap~Lvt~emv~~Mk~GsVIVDvA~ 313 (405)
T 4dio_A 271 EHIAK---QDIVITTALIPGRPAPRLVTREMLDSMKPGSVVVDLAV 313 (405)
T ss_dssp HHHHT---CSEEEECCCCSSSCCCCCBCHHHHTTSCTTCEEEETTG
T ss_pred HHhcC---CCEEEECCcCCCCCCCEEecHHHHhcCCCCCEEEEEeC
Confidence 55555 99999986 4322211122567778899999999974
|
| >1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A | Back alignment and structure |
|---|
Probab=98.33 E-value=3e-06 Score=86.04 Aligned_cols=122 Identities=18% Similarity=0.215 Sum_probs=82.8
Q ss_pred CCCCCcEEEEcccHHHHHHHHHHHHC-CCeE-EEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCC
Q psy9637 1 MAAKGDIGLIGLAVMGQNLILNMNDH-GFTV-VAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKA 78 (490)
Q Consensus 1 M~~~~~IgiIGlG~MG~~lA~~L~~~-G~~V-~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~ 78 (490)
|..++||||||+|.||..++..|.+. ++++ .++|+++++.+.+.+..........+++++++++. +.+|+|++++|+
T Consensus 3 ~~~~~~vgiiG~G~ig~~~~~~l~~~~~~~lv~v~d~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~-~~~D~V~i~tp~ 81 (362)
T 1ydw_A 3 TETQIRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIHGSYESLLED-PEIDALYVPLPT 81 (362)
T ss_dssp ---CEEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESSHHHHHHC-TTCCEEEECCCG
T ss_pred CCCceEEEEECchHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCCCCeeeCCHHHHhcC-CCCCEEEEcCCh
Confidence 44567999999999999999999875 5665 48999999988877653211112457899999863 238999999998
Q ss_pred CchHHHHHHhhcccCCCCC-EEEcC-CCCChHHHHHHHHHHHHcccccccc
Q psy9637 79 GSAVDDFIDKLVPLLEKGD-IIIDG-GNSEYQDTDRRSKALEAKGLLYVGC 127 (490)
Q Consensus 79 ~~~v~~vl~~l~~~l~~g~-iiId~-s~~~~~~~~~~~~~l~~~gi~~ld~ 127 (490)
.... +++.. .++.|+ ++++- -+....+..++.+.++++|+.+..+
T Consensus 82 ~~h~-~~~~~---al~aGk~V~~EKP~a~~~~e~~~l~~~a~~~g~~~~~~ 128 (362)
T 1ydw_A 82 SLHV-EWAIK---AAEKGKHILLEKPVAMNVTEFDKIVDACEANGVQIMDG 128 (362)
T ss_dssp GGHH-HHHHH---HHTTTCEEEECSSCSSSHHHHHHHHHHHHTTTCCEEEC
T ss_pred HHHH-HHHHH---HHHCCCeEEEecCCcCCHHHHHHHHHHHHHcCCEEEEE
Confidence 6443 33333 345666 45543 2344566777777777778765533
|
| >3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A* | Back alignment and structure |
|---|
Probab=98.33 E-value=1.9e-07 Score=91.23 Aligned_cols=109 Identities=12% Similarity=0.097 Sum_probs=75.9
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
+++.|||+|.||++++..|++.|.+|+++||++++.+.+.+.+.. ..+++++ ..+|+||.++|.+...+.
T Consensus 119 k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~~ka~~la~~~~~------~~~~~~l----~~~DiVInaTp~Gm~~~~ 188 (269)
T 3phh_A 119 QNALILGAGGSAKALACELKKQGLQVSVLNRSSRGLDFFQRLGCD------CFMEPPK----SAFDLIINATSASLHNEL 188 (269)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTHHHHHHHTCE------EESSCCS----SCCSEEEECCTTCCCCSC
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCe------EecHHHh----ccCCEEEEcccCCCCCCC
Confidence 579999999999999999999999999999999999888733321 1122222 248999999998732211
Q ss_pred HH--HhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccc
Q psy9637 85 FI--DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVG 126 (490)
Q Consensus 85 vl--~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld 126 (490)
.+ +.+...++++.+|+|+... | .|. ..+..+++|+..+|
T Consensus 189 ~l~~~~l~~~l~~~~~v~D~vY~-P-~T~-ll~~A~~~G~~~~~ 229 (269)
T 3phh_A 189 PLNKEVLKGYFKEGKLAYDLAYG-F-LTP-FLSLAKELKTPFQD 229 (269)
T ss_dssp SSCHHHHHHHHHHCSEEEESCCS-S-CCH-HHHHHHHTTCCEEC
T ss_pred CCChHHHHhhCCCCCEEEEeCCC-C-chH-HHHHHHHCcCEEEC
Confidence 11 1122235578999999875 4 444 55666777765433
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.32 E-value=1.7e-06 Score=85.99 Aligned_cols=95 Identities=14% Similarity=0.269 Sum_probs=65.1
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC--eEEEEeCChHHHHHHHHcccC------CCCeeccCCHHHHHhhCCCCcEEEEec
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGF--TVVAYNRTTAKVDSFLANEAK------GTNIIGAHSLEELVKNLKKPRRVMMLV 76 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~g~~------~~~i~~~~s~~e~v~~l~~~dvIil~v 76 (490)
|||+|||+|.||.++|..|+.+|+ +|++||+++++++.....-.. ..++.. ++. + .++.+|+||+++
T Consensus 1 mkI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~~~~~~~~~~l~~~~~~~~~~~i~~-~~~-~---a~~~aDvVIi~~ 75 (304)
T 2v6b_A 1 MKVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVWH-GGH-S---ELADAQVVILTA 75 (304)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHTTSCCTTSCCEEEE-ECG-G---GGTTCSEEEECC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHhhhhhhhhcCCeEEEE-CCH-H---HhCCCCEEEEcC
Confidence 589999999999999999999999 999999998877643321111 112322 333 2 344599999999
Q ss_pred CCCc---------------hHHHHHHhhcccCCCCCEEEcCCCC
Q psy9637 77 KAGS---------------AVDDFIDKLVPLLEKGDIIIDGGNS 105 (490)
Q Consensus 77 p~~~---------------~v~~vl~~l~~~l~~g~iiId~s~~ 105 (490)
+.+. .+++++..+.++ .++.+||..+|.
T Consensus 76 ~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~~~vi~~tNP 118 (304)
T 2v6b_A 76 GANQKPGESRLDLLEKNADIFRELVPQITRA-APDAVLLVTSNP 118 (304)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHH-CSSSEEEECSSS
T ss_pred CCCCCCCCcHHHHHHhHHHHHHHHHHHHHHh-CCCeEEEEecCc
Confidence 6543 235666777776 577888878774
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=1.3e-06 Score=75.69 Aligned_cols=99 Identities=19% Similarity=0.341 Sum_probs=65.0
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCee-ccCCHHHHHhh-CCCCcEEEEecCCCch
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNII-GAHSLEELVKN-LKKPRRVMMLVKAGSA 81 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~-~~~s~~e~v~~-l~~~dvIil~vp~~~~ 81 (490)
+++|.|+|+|.+|..++..|.+.|++|+++|+++++.+.+.+.+.. .+. -..+.+.+.+. ++.+|+|+.+++++..
T Consensus 6 ~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~~~~--~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~~~ 83 (144)
T 2hmt_A 6 NKQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATH--AVIANATEENELLSLGIRNFEYVIVAIGANIQ 83 (144)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHTTTTTCSE--EEECCTTCHHHHHTTTGGGCSEEEECCCSCHH
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCE--EEEeCCCCHHHHHhcCCCCCCEEEECCCCchH
Confidence 4579999999999999999999999999999999887765543321 011 12234333221 4458999999997523
Q ss_pred HHHHHHhhcccCCCCCEEEcCCC
Q psy9637 82 VDDFIDKLVPLLEKGDIIIDGGN 104 (490)
Q Consensus 82 v~~vl~~l~~~l~~g~iiId~s~ 104 (490)
....+......+.+..+|+-.++
T Consensus 84 ~~~~~~~~~~~~~~~~ii~~~~~ 106 (144)
T 2hmt_A 84 ASTLTTLLLKELDIPNIWVKAQN 106 (144)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCS
T ss_pred HHHHHHHHHHHcCCCeEEEEeCC
Confidence 33233333444555555555544
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=1.4e-06 Score=77.62 Aligned_cols=98 Identities=16% Similarity=0.200 Sum_probs=63.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHH-HcccCCCCeec-cCCHHHHHhh-CCCCcEEEEecCCCc
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFL-ANEAKGTNIIG-AHSLEELVKN-LKKPRRVMMLVKAGS 80 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~-~~g~~~~~i~~-~~s~~e~v~~-l~~~dvIil~vp~~~ 80 (490)
.++|.|+|+|.+|..++..|.+.|++|+++|+++++.+.+. ..+.. .+.. ..+.+.+.+. ++.+|+||++++++.
T Consensus 19 ~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~g~~--~~~~d~~~~~~l~~~~~~~ad~Vi~~~~~~~ 96 (155)
T 2g1u_A 19 SKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEYAFHRLNSEFSGF--TVVGDAAEFETLKECGMEKADMVFAFTNDDS 96 (155)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGGGGSCTTCCSE--EEESCTTSHHHHHTTTGGGCSEEEECSSCHH
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHhcCCCc--EEEecCCCHHHHHHcCcccCCEEEEEeCCcH
Confidence 36899999999999999999999999999999998877654 33221 0111 1233333221 456999999999864
Q ss_pred hHHHHHHhhcccCCCCC-EEEcCCC
Q psy9637 81 AVDDFIDKLVPLLEKGD-IIIDGGN 104 (490)
Q Consensus 81 ~v~~vl~~l~~~l~~g~-iiId~s~ 104 (490)
....+..+...+.+.. +|....+
T Consensus 97 -~~~~~~~~~~~~~~~~~iv~~~~~ 120 (155)
T 2g1u_A 97 -TNFFISMNARYMFNVENVIARVYD 120 (155)
T ss_dssp -HHHHHHHHHHHTSCCSEEEEECSS
T ss_pred -HHHHHHHHHHHHCCCCeEEEEECC
Confidence 3334334444433333 4444433
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.29 E-value=4.1e-06 Score=78.76 Aligned_cols=96 Identities=22% Similarity=0.185 Sum_probs=65.9
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHc-ccCCCCeec-cCCHHHHHh-hCCCCcEEEEecCCCch
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLAN-EAKGTNIIG-AHSLEELVK-NLKKPRRVMMLVKAGSA 81 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~-g~~~~~i~~-~~s~~e~v~-~l~~~dvIil~vp~~~~ 81 (490)
|||.|+|+|.+|..+|..|.+.|++|+++|+++++++.+.+. +.. -+.. ..+.+.+.+ .++.+|+|+++++++ .
T Consensus 1 M~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~~~~~--~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d-~ 77 (218)
T 3l4b_C 1 MKVIIIGGETTAYYLARSMLSRKYGVVIINKDRELCEEFAKKLKAT--IIHGDGSHKEILRDAEVSKNDVVVILTPRD-E 77 (218)
T ss_dssp CCEEEECCHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHSSSE--EEESCTTSHHHHHHHTCCTTCEEEECCSCH-H
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHcCCe--EEEcCCCCHHHHHhcCcccCCEEEEecCCc-H
Confidence 589999999999999999999999999999999999887653 221 0111 233333332 366799999999986 4
Q ss_pred HHHHHHhhcccCCCC-CEEEcCC
Q psy9637 82 VDDFIDKLVPLLEKG-DIIIDGG 103 (490)
Q Consensus 82 v~~vl~~l~~~l~~g-~iiId~s 103 (490)
....+..+...+.+. .+|.-..
T Consensus 78 ~n~~~~~~a~~~~~~~~iia~~~ 100 (218)
T 3l4b_C 78 VNLFIAQLVMKDFGVKRVVSLVN 100 (218)
T ss_dssp HHHHHHHHHHHTSCCCEEEECCC
T ss_pred HHHHHHHHHHHHcCCCeEEEEEe
Confidence 444444444443333 4444333
|
| >3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} | Back alignment and structure |
|---|
Probab=98.28 E-value=2.2e-06 Score=84.15 Aligned_cols=104 Identities=17% Similarity=0.186 Sum_probs=77.6
Q ss_pred ceeecCCCCcchhHHhhhhHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhccCcchhHHHHHHHHHhcccCC-CCCc
Q psy9637 349 CDWVGEQGAGHFVKMVHNGIEYGDMQLICEAYHLMTGALGMSHDEMSAVFEDWNKGELDSFLIEITKDILKFKDT-DGAP 427 (490)
Q Consensus 349 ~~~~g~~g~gh~vkmvhngiey~~m~~~~E~~~~~~~~~~~~~~~~~~~~~~w~~g~~~s~l~~~~~~~~~~~~~-~~~~ 427 (490)
+.|+|+.|+|+.+|+++|.+.++++++++|++.+++. .|++ ...+++..+.+...||+++.....+...|. .+.
T Consensus 158 ~~~~g~~g~~~~~Kl~~N~~~~~~~~~~~Ea~~l~~~-~G~~---~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~- 232 (287)
T 3pdu_A 158 CLHLGEVGQGARMKLVVNMIMGQMMTALGEGMALGRN-CGLD---GGQLLEVLDAGAMANPMFKGKGQMLLSGEFPTSF- 232 (287)
T ss_dssp EEECSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCC---HHHHHHHHHHSTTCCHHHHHHHHHHHHTCCCCSS-
T ss_pred EEEcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCC---HHHHHHHHHhccccChHHHhhccccccCCCCCCC-
Confidence 4578999999999999999999999999999999997 8885 455566666677788888766554433332 222
Q ss_pred chhhhccccCCCcchHHHHHHHHhcCCCchhhHHHH
Q psy9637 428 LVEKIKDYAGQKGTGKWTAISALDYGVPVTLIGESV 463 (490)
Q Consensus 428 ~l~~i~~~~~~~g~g~w~~~~a~~~~~p~~~i~~a~ 463 (490)
.++.... +.++.++.|.++|+|+|++..+.
T Consensus 233 ~~~~~~k------d~~~~~~~a~~~g~~~p~~~~~~ 262 (287)
T 3pdu_A 233 PLKHMQK------DLRLAVELGDRLGQPLHGAATAN 262 (287)
T ss_dssp BHHHHHH------HHHHHHHHHHHHTCCCHHHHHHH
T ss_pred cHHHHHH------HHHHHHHHHHHcCCCChHHHHHH
Confidence 2222221 35689999999999999877763
|
| >3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=98.28 E-value=4.3e-06 Score=84.12 Aligned_cols=115 Identities=9% Similarity=0.180 Sum_probs=79.3
Q ss_pred CCCcEEEEcccHHHHHHHHHHH-H-CCCeE-EEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCC
Q psy9637 3 AKGDIGLIGLAVMGQNLILNMN-D-HGFTV-VAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAG 79 (490)
Q Consensus 3 ~~~~IgiIGlG~MG~~lA~~L~-~-~G~~V-~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~ 79 (490)
.+++|||||+|.||..++..|. + .+++| .++|+++++.+.+.+.... ...+++++++++. +.+|+|++|+|+.
T Consensus 7 ~~~~v~iiG~G~ig~~~~~~l~~~~~~~~~vav~d~~~~~~~~~a~~~g~---~~~~~~~~~~l~~-~~~D~V~i~tp~~ 82 (346)
T 3cea_A 7 KPLRAAIIGLGRLGERHARHLVNKIQGVKLVAACALDSNQLEWAKNELGV---ETTYTNYKDMIDT-ENIDAIFIVAPTP 82 (346)
T ss_dssp CCEEEEEECCSTTHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHHHTTCC---SEEESCHHHHHTT-SCCSEEEECSCGG
T ss_pred CcceEEEEcCCHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHhCC---CcccCCHHHHhcC-CCCCEEEEeCChH
Confidence 3568999999999999999998 5 47775 5799999998887764221 1357899998863 2489999999986
Q ss_pred chHHHHHHhhcccCCCCC-EEEcC-CCCChHHHHHHHHHHHHc-ccccc
Q psy9637 80 SAVDDFIDKLVPLLEKGD-IIIDG-GNSEYQDTDRRSKALEAK-GLLYV 125 (490)
Q Consensus 80 ~~v~~vl~~l~~~l~~g~-iiId~-s~~~~~~~~~~~~~l~~~-gi~~l 125 (490)
...+.+.. + ++.|. ++++. .+....+..++.+.++++ |+.+.
T Consensus 83 ~h~~~~~~-a---l~~G~~v~~eKp~~~~~~~~~~l~~~a~~~~~~~~~ 127 (346)
T 3cea_A 83 FHPEMTIY-A---MNAGLNVFCEKPLGLDFNEVDEMAKVIKSHPNQIFQ 127 (346)
T ss_dssp GHHHHHHH-H---HHTTCEEEECSCCCSCHHHHHHHHHHHHTCTTSCEE
T ss_pred hHHHHHHH-H---HHCCCEEEEcCCCCCCHHHHHHHHHHHHhCCCCeEE
Confidence 54444333 2 34566 45553 233456666666666666 66543
|
| >3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.27 E-value=2.3e-06 Score=87.17 Aligned_cols=121 Identities=13% Similarity=0.143 Sum_probs=85.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCee-ccCCHHHHHhhCCCCcEEEEecCCCchH
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNII-GAHSLEELVKNLKKPRRVMMLVKAGSAV 82 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~-~~~s~~e~v~~l~~~dvIil~vp~~~~v 82 (490)
+|||.|||+|.+|..++..|++ .++|.+.|++.++++++.+... .+. -..+.+++.+.++++|+||.|+|.. .-
T Consensus 16 ~mkilvlGaG~vG~~~~~~L~~-~~~v~~~~~~~~~~~~~~~~~~---~~~~d~~d~~~l~~~~~~~DvVi~~~p~~-~~ 90 (365)
T 3abi_A 16 HMKVLILGAGNIGRAIAWDLKD-EFDVYIGDVNNENLEKVKEFAT---PLKVDASNFDKLVEVMKEFELVIGALPGF-LG 90 (365)
T ss_dssp CCEEEEECCSHHHHHHHHHHTT-TSEEEEEESCHHHHHHHTTTSE---EEECCTTCHHHHHHHHTTCSEEEECCCGG-GH
T ss_pred ccEEEEECCCHHHHHHHHHHhc-CCCeEEEEcCHHHHHHHhccCC---cEEEecCCHHHHHHHHhCCCEEEEecCCc-cc
Confidence 5899999999999999999875 5899999999999887754321 111 1355666666566799999999985 44
Q ss_pred HHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccccc-ccCCCCCc
Q psy9637 83 DDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYV-GCGVSGGE 133 (490)
Q Consensus 83 ~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~l-d~~vsGg~ 133 (490)
..+++.. ++.|.-++|.+-.. ....++.+..+++|+.++ ++++.-|.
T Consensus 91 ~~v~~~~---~~~g~~yvD~s~~~-~~~~~l~~~a~~~g~~~i~~~G~~PG~ 138 (365)
T 3abi_A 91 FKSIKAA---IKSKVDMVDVSFMP-ENPLELRDEAEKAQVTIVFDAGFAPGL 138 (365)
T ss_dssp HHHHHHH---HHHTCEEEECCCCS-SCGGGGHHHHHHTTCEEECCCBTTTBH
T ss_pred chHHHHH---HhcCcceEeeeccc-hhhhhhhhhhccCCceeeecCCCCCch
Confidence 4555443 45688999987543 445555667777787654 55655444
|
| >1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=98.27 E-value=3.1e-06 Score=84.54 Aligned_cols=114 Identities=12% Similarity=0.125 Sum_probs=76.6
Q ss_pred CCcEEEEcccHHHH-HHHHHHHHC-CCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCch
Q psy9637 4 KGDIGLIGLAVMGQ-NLILNMNDH-GFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSA 81 (490)
Q Consensus 4 ~~~IgiIGlG~MG~-~lA~~L~~~-G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~ 81 (490)
++||||||+|.||. .++..|.+. +++|+++|+++++.+.+.+..... ..+.+..+++. +.+|+|++|+|+...
T Consensus 2 ~~~igiIG~G~ig~~~~~~~l~~~~~~~l~v~d~~~~~~~~~a~~~g~~---~~~~~~~~~l~--~~~D~V~i~tp~~~h 76 (323)
T 1xea_A 2 SLKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYRVS---ATCTDYRDVLQ--YGVDAVMIHAATDVH 76 (323)
T ss_dssp CEEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTTCC---CCCSSTTGGGG--GCCSEEEECSCGGGH
T ss_pred CcEEEEECCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHcCCC---ccccCHHHHhh--cCCCEEEEECCchhH
Confidence 36999999999998 499998774 778889999999998887653211 11334444442 348999999998644
Q ss_pred HHHHHHhhcccCCCCC-EEEcC-CCCChHHHHHHHHHHHHccccccc
Q psy9637 82 VDDFIDKLVPLLEKGD-IIIDG-GNSEYQDTDRRSKALEAKGLLYVG 126 (490)
Q Consensus 82 v~~vl~~l~~~l~~g~-iiId~-s~~~~~~~~~~~~~l~~~gi~~ld 126 (490)
.+++... ++.|+ ++++- .+....+..++.+.++++|+.++.
T Consensus 77 -~~~~~~a---l~~Gk~V~~EKP~~~~~~~~~~l~~~a~~~g~~~~v 119 (323)
T 1xea_A 77 -STLAAFF---LHLGIPTFVDKPLAASAQECENLYELAEKHHQPLYV 119 (323)
T ss_dssp -HHHHHHH---HHTTCCEEEESCSCSSHHHHHHHHHHHHHTTCCEEE
T ss_pred -HHHHHHH---HHCCCeEEEeCCCcCCHHHHHHHHHHHHhcCCeEEE
Confidence 3443333 33454 66663 334556777777777777765543
|
| >3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum} | Back alignment and structure |
|---|
Probab=98.27 E-value=2.2e-06 Score=87.09 Aligned_cols=113 Identities=12% Similarity=0.138 Sum_probs=79.6
Q ss_pred CCcEEEEcccHHHHH-HHHHHHHC-CCeEE-EEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCc
Q psy9637 4 KGDIGLIGLAVMGQN-LILNMNDH-GFTVV-AYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGS 80 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~-lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~ 80 (490)
++||||||+|.||.. ++..|.+. +++|+ ++|+++++++.+.+... ....+++++++++. ++.|+|++|+|+..
T Consensus 5 ~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~~---~~~~~~~~~~ll~~-~~vD~V~i~tp~~~ 80 (359)
T 3m2t_A 5 LIKVGLVGIGAQMQENLLPSLLQMQDIRIVAACDSDLERARRVHRFIS---DIPVLDNVPAMLNQ-VPLDAVVMAGPPQL 80 (359)
T ss_dssp CEEEEEECCSHHHHHTHHHHHHTCTTEEEEEEECSSHHHHGGGGGTSC---SCCEESSHHHHHHH-SCCSEEEECSCHHH
T ss_pred cceEEEECCCHHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHhcC---CCcccCCHHHHhcC-CCCCEEEEcCCcHH
Confidence 468999999999985 88998876 67776 89999999888776521 12368899999986 23699999999864
Q ss_pred hHHHHHHhhcccCCCCC-EEEcCC-CCChHHHHHHHHHHHHccccc
Q psy9637 81 AVDDFIDKLVPLLEKGD-IIIDGG-NSEYQDTDRRSKALEAKGLLY 124 (490)
Q Consensus 81 ~v~~vl~~l~~~l~~g~-iiId~s-~~~~~~~~~~~~~l~~~gi~~ 124 (490)
..+-+.. . ++.|+ ++++-- .....+..++.+.++++|+.+
T Consensus 81 H~~~~~~-a---l~aGkhVl~EKPla~~~~e~~~l~~~a~~~g~~~ 122 (359)
T 3m2t_A 81 HFEMGLL-A---MSKGVNVFVEKPPCATLEELETLIDAARRSDVVS 122 (359)
T ss_dssp HHHHHHH-H---HHTTCEEEECSCSCSSHHHHHHHHHHHHHHTCCE
T ss_pred HHHHHHH-H---HHCCCeEEEECCCcCCHHHHHHHHHHHHHcCCEE
Confidence 4443333 2 33454 555532 334567777777777777643
|
| >1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1 | Back alignment and structure |
|---|
Probab=98.26 E-value=1.7e-06 Score=88.04 Aligned_cols=107 Identities=20% Similarity=0.229 Sum_probs=74.3
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHc-ccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLAN-EAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~-g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
++|+|+|+|+||..+|++|.+.|++|+++|+++++++++.+. ++. ..+..++.. ..+|+++.|........
T Consensus 174 ktV~V~G~G~VG~~~A~~L~~~GakVvv~D~~~~~l~~~a~~~ga~------~v~~~~ll~--~~~DIvip~a~~~~I~~ 245 (364)
T 1leh_A 174 LAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGAD------AVAPNAIYG--VTCDIFAPCALGAVLND 245 (364)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCCE------ECCGGGTTT--CCCSEEEECSCSCCBST
T ss_pred CEEEEECchHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCE------EEChHHHhc--cCCcEeeccchHHHhCH
Confidence 589999999999999999999999999999999988877764 321 224444433 14899998865432222
Q ss_pred HHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccccc
Q psy9637 84 DFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYV 125 (490)
Q Consensus 84 ~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~l 125 (490)
+.++. + ..++|++.+|.. ....+..+.+.++|+.|+
T Consensus 246 ~~~~~----l-g~~iV~e~An~p-~t~~ea~~~L~~~Gi~~~ 281 (364)
T 1leh_A 246 FTIPQ----L-KAKVIAGSADNQ-LKDPRHGKYLHELGIVYA 281 (364)
T ss_dssp THHHH----C-CCSEECCSCSCC-BSSHHHHHHHHHHTCEEC
T ss_pred HHHHh----C-CCcEEEeCCCCC-cccHHHHHHHHhCCCEEe
Confidence 23333 3 456777777754 333345577888888653
|
| >3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=98.26 E-value=6.5e-06 Score=83.29 Aligned_cols=113 Identities=15% Similarity=0.205 Sum_probs=79.4
Q ss_pred CCCCCcEEEEcccHHHHH-HHHHHHHC-CCeEE-EEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecC
Q psy9637 1 MAAKGDIGLIGLAVMGQN-LILNMNDH-GFTVV-AYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVK 77 (490)
Q Consensus 1 M~~~~~IgiIGlG~MG~~-lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp 77 (490)
|+.++||||||+|.||.. .+..|.+. +++|+ ++|+++++.++ .. ..+..+++++++++. ++.|+|++|+|
T Consensus 4 M~~~~rvgiiG~G~~g~~~~~~~~~~~~~~~l~av~d~~~~~~~~--~~----~~~~~~~~~~~ll~~-~~vD~V~i~tp 76 (352)
T 3kux_A 4 MADKIKVGLLGYGYASKTFHAPLIMGTPGLELAGVSSSDASKVHA--DW----PAIPVVSDPQMLFND-PSIDLIVIPTP 76 (352)
T ss_dssp TTCCEEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHHT--TC----SSCCEESCHHHHHHC-SSCCEEEECSC
T ss_pred ccCCceEEEECCCHHHHHHHHHHHhhCCCcEEEEEECCCHHHHHh--hC----CCCceECCHHHHhcC-CCCCEEEEeCC
Confidence 555578999999999997 77777765 67765 78999987661 11 123468999999875 45899999999
Q ss_pred CCchHHHHHHhhcccCCCCC-EEEcCC-CCChHHHHHHHHHHHHccccc
Q psy9637 78 AGSAVDDFIDKLVPLLEKGD-IIIDGG-NSEYQDTDRRSKALEAKGLLY 124 (490)
Q Consensus 78 ~~~~v~~vl~~l~~~l~~g~-iiId~s-~~~~~~~~~~~~~l~~~gi~~ 124 (490)
+....+.+... ++.|+ ++++-- +....+..++.+.++++|+.+
T Consensus 77 ~~~H~~~~~~a----l~aGkhV~~EKPla~~~~e~~~l~~~a~~~g~~~ 121 (352)
T 3kux_A 77 NDTHFPLAQSA----LAAGKHVVVDKPFTVTLSQANALKEHADDAGLLL 121 (352)
T ss_dssp TTTHHHHHHHH----HHTTCEEEECSSCCSCHHHHHHHHHHHHHTTCCE
T ss_pred hHHHHHHHHHH----HHCCCcEEEECCCcCCHHHHHHHHHHHHHcCCeE
Confidence 97555444332 33455 666643 445677777777777777654
|
| >1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A | Back alignment and structure |
|---|
Probab=98.26 E-value=3.6e-07 Score=80.49 Aligned_cols=104 Identities=16% Similarity=0.205 Sum_probs=77.8
Q ss_pred CcEEEEcc----cHHHHHHHHHHHHCCCeEEEEeCChHHH-HHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCC
Q psy9637 5 GDIGLIGL----AVMGQNLILNMNDHGFTVVAYNRTTAKV-DSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAG 79 (490)
Q Consensus 5 ~~IgiIGl----G~MG~~lA~~L~~~G~~V~v~dr~~~~~-~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~ 79 (490)
.+|+|||+ |+||..++++|.+.||+ +|++||.+. +.+ ..+..+.|++|+.+. +|++++++|+
T Consensus 14 ~~vaVvGas~~~g~~G~~~~~~l~~~G~~--v~~vnp~~~~~~i-------~G~~~~~sl~el~~~---vDlavi~vp~- 80 (140)
T 1iuk_A 14 KTIAVLGAHKDPSRPAHYVPRYLREQGYR--VLPVNPRFQGEEL-------FGEEAVASLLDLKEP---VDILDVFRPP- 80 (140)
T ss_dssp CEEEEETCCSSTTSHHHHHHHHHHHTTCE--EEEECGGGTTSEE-------TTEECBSSGGGCCSC---CSEEEECSCH-
T ss_pred CEEEEECCCCCCCChHHHHHHHHHHCCCE--EEEeCCCcccCcC-------CCEEecCCHHHCCCC---CCEEEEEeCH-
Confidence 57999999 89999999999999997 777777641 111 123457788887665 8999999999
Q ss_pred chHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccc
Q psy9637 80 SAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVG 126 (490)
Q Consensus 80 ~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld 126 (490)
..+.++++++...- ...+++..++. ..+..+.+++.|++++.
T Consensus 81 ~~~~~v~~~~~~~g-i~~i~~~~g~~----~~~~~~~a~~~Gir~vg 122 (140)
T 1iuk_A 81 SALMDHLPEVLALR-PGLVWLQSGIR----HPEFEKALKEAGIPVVA 122 (140)
T ss_dssp HHHTTTHHHHHHHC-CSCEEECTTCC----CHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHHHHcC-CCEEEEcCCcC----HHHHHHHHHHcCCEEEc
Confidence 57888887776643 34677776653 35556777788998875
|
| >3ulk_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, rossmann fold, acetolactate, oxidoreductase; HET: CSX NDP; 2.30A {Escherichia coli} PDB: 1yrl_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=3.3e-06 Score=86.52 Aligned_cols=87 Identities=24% Similarity=0.304 Sum_probs=71.8
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCCh------HHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCC
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTT------AKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKA 78 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~------~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~ 78 (490)
++|+|||.|..|.+-|+||.+.|.+|++--|.. ...+...+.|.. +.+++|+++. +|+|++.+|+
T Consensus 38 K~IaVIGyGsQG~AqAlNLRDSGv~V~Vglr~~s~~e~~~S~~~A~~~Gf~------v~~~~eA~~~---ADvV~~L~PD 108 (491)
T 3ulk_A 38 KKVVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFK------VGTYEELIPQ---ADLVINLTPD 108 (491)
T ss_dssp SEEEEESCSHHHHHHHHHHHHTTCEEEEEECHHHHHTTCHHHHHHHHTTCE------EEEHHHHGGG---CSEEEECSCG
T ss_pred CEEEEeCCChHhHHHHhHHHhcCCcEEEEeCCCCcccccchHHHHHHCCCE------ecCHHHHHHh---CCEEEEeCCh
Confidence 689999999999999999999999999887732 234455555543 5689999988 9999999999
Q ss_pred CchHHHHHHhhcccCCCCCEEEc
Q psy9637 79 GSAVDDFIDKLVPLLEKGDIIID 101 (490)
Q Consensus 79 ~~~v~~vl~~l~~~l~~g~iiId 101 (490)
. .-.++.+.+.|.|++|+++.=
T Consensus 109 ~-~q~~vy~~I~p~lk~G~~L~f 130 (491)
T 3ulk_A 109 K-QHSDVVRTVQPLMKDGAALGY 130 (491)
T ss_dssp G-GHHHHHHHHGGGSCTTCEEEE
T ss_pred h-hHHHHHHHHHhhCCCCCEEEe
Confidence 5 666778889999999998864
|
| >1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=4.9e-06 Score=82.91 Aligned_cols=96 Identities=14% Similarity=0.175 Sum_probs=66.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHcc-------cCCCCeeccCCHHHHHhhCCCCcEEEEe
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGF-TVVAYNRTTAKVDSFLANE-------AKGTNIIGAHSLEELVKNLKKPRRVMML 75 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~g-------~~~~~i~~~~s~~e~v~~l~~~dvIil~ 75 (490)
+|||+|||+|.||.+++..|+.+|+ +|.++|+++++++.....- ....++..+++. +.++ .+|+||++
T Consensus 2 ~~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~-~a~~---~aD~Vi~a 77 (309)
T 1ur5_A 2 RKKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNY-ADTA---NSDVIVVT 77 (309)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCG-GGGT---TCSEEEEC
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCccHHHHHHHhHHHhHhhcCCCeEEEECCCH-HHHC---CCCEEEEc
Confidence 3699999999999999999999997 9999999987776432211 112345555666 3344 49999999
Q ss_pred cCCCc---------------hHHHHHHhhcccCCCCCEEEcCCC
Q psy9637 76 VKAGS---------------AVDDFIDKLVPLLEKGDIIIDGGN 104 (490)
Q Consensus 76 vp~~~---------------~v~~vl~~l~~~l~~g~iiId~s~ 104 (490)
++.+. .++++.+.+.++. ++.+||..||
T Consensus 78 ~g~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~vi~~tN 120 (309)
T 1ur5_A 78 SGAPRKPGMSREDLIKVNADITRACISQAAPLS-PNAVIIMVNN 120 (309)
T ss_dssp CCC--------CHHHHHHHHHHHHHHHHHGGGC-TTCEEEECCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEcCC
Confidence 85542 1234445666554 7778877777
|
| >3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.22 E-value=1.5e-06 Score=86.41 Aligned_cols=106 Identities=14% Similarity=0.134 Sum_probs=64.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHHC-CCeEE-EEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCch
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDH-GFTVV-AYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSA 81 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~ 81 (490)
++||||||+|.||..++..|.+. +++|+ ++|+++++++. .+.. ....+++.+. +++|+|++|+|+...
T Consensus 9 ~irv~IIG~G~iG~~~~~~l~~~~~~elvav~d~~~~~~~~---~g~~---~~~~~~l~~~----~~~DvViiatp~~~h 78 (304)
T 3bio_A 9 KIRAAIVGYGNIGRYALQALREAPDFEIAGIVRRNPAEVPF---ELQP---FRVVSDIEQL----ESVDVALVCSPSREV 78 (304)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECC----------CCTT---SCEESSGGGS----SSCCEEEECSCHHHH
T ss_pred CCEEEEECChHHHHHHHHHHhcCCCCEEEEEEcCCHHHHHH---cCCC---cCCHHHHHhC----CCCCEEEECCCchhh
Confidence 46899999999999999999874 67877 79999887654 2221 1123333333 458999999998644
Q ss_pred HHHHHHhhcccCCCCCEEEcCCCC---ChHHHHHHHHHHHHcccc
Q psy9637 82 VDDFIDKLVPLLEKGDIIIDGGNS---EYQDTDRRSKALEAKGLL 123 (490)
Q Consensus 82 v~~vl~~l~~~l~~g~iiId~s~~---~~~~~~~~~~~l~~~gi~ 123 (490)
. +++. ..++.|..|++.... ...+..++.+.+++.|..
T Consensus 79 ~-~~~~---~al~aG~~Vi~ekP~~a~~~~~~~~l~~~a~~~g~~ 119 (304)
T 3bio_A 79 E-RTAL---EILKKGICTADSFDIHDGILALRRSLGDAAGKSGAA 119 (304)
T ss_dssp H-HHHH---HHHTTTCEEEECCCCGGGHHHHHHHHHHHHHHHTCE
T ss_pred H-HHHH---HHHHcCCeEEECCCCCCCCHHHHHHHHHHHHhCCCE
Confidence 3 3333 345578888886532 233344455666666643
|
| >3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=4.8e-06 Score=87.94 Aligned_cols=90 Identities=11% Similarity=0.112 Sum_probs=73.1
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
++|+|||+|.||..+|+.+...|++|+++|+++.+.+...+.|.. ..++++++.. +|+|+.++++...+.
T Consensus 275 ktV~IiG~G~IG~~~A~~lka~Ga~Viv~d~~~~~~~~A~~~Ga~------~~~l~e~l~~---aDvVi~atgt~~~i~- 344 (494)
T 3ce6_A 275 KKVLICGYGDVGKGCAEAMKGQGARVSVTEIDPINALQAMMEGFD------VVTVEEAIGD---ADIVVTATGNKDIIM- 344 (494)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCE------ECCHHHHGGG---CSEEEECSSSSCSBC-
T ss_pred CEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCE------EecHHHHHhC---CCEEEECCCCHHHHH-
Confidence 689999999999999999999999999999999988776666542 3567777765 999999998764333
Q ss_pred HHHhhcccCCCCCEEEcCCCCC
Q psy9637 85 FIDKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 85 vl~~l~~~l~~g~iiId~s~~~ 106 (490)
.+.+..+++|.+|++.|...
T Consensus 345 --~~~l~~mk~ggilvnvG~~~ 364 (494)
T 3ce6_A 345 --LEHIKAMKDHAILGNIGHFD 364 (494)
T ss_dssp --HHHHHHSCTTCEEEECSSSG
T ss_pred --HHHHHhcCCCcEEEEeCCCC
Confidence 24445678999999999754
|
| >3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V} | Back alignment and structure |
|---|
Probab=98.20 E-value=2.4e-06 Score=85.66 Aligned_cols=140 Identities=14% Similarity=0.138 Sum_probs=89.6
Q ss_pred CC-CCCcEEEEcccHHHHHHHHHHHHC-CCeEE-EEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecC
Q psy9637 1 MA-AKGDIGLIGLAVMGQNLILNMNDH-GFTVV-AYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVK 77 (490)
Q Consensus 1 M~-~~~~IgiIGlG~MG~~lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp 77 (490)
|+ .++||||||+|.||..++..|.+. +++|+ ++|+++++.+.+.+.... ...+++++++++. +.+|+|++++|
T Consensus 1 M~m~~~rigiiG~G~ig~~~~~~l~~~~~~~~~av~d~~~~~~~~~a~~~~~---~~~~~~~~~ll~~-~~~D~V~i~tp 76 (329)
T 3evn_A 1 MSLSKVRYGVVSTAKVAPRFIEGVRLAGNGEVVAVSSRTLESAQAFANKYHL---PKAYDKLEDMLAD-ESIDVIYVATI 76 (329)
T ss_dssp ----CEEEEEEBCCTTHHHHHHHHHHHCSEEEEEEECSCSSTTCC---CCCC---SCEESCHHHHHTC-TTCCEEEECSC
T ss_pred CCCCceEEEEEechHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHHcCC---CcccCCHHHHhcC-CCCCEEEECCC
Confidence 54 346899999999999999999875 45554 789999988777654321 1257899999873 24899999999
Q ss_pred CCchHHHHHHhhcccCCCCC-EEEcCC-CCChHHHHHHHHHHHHccccccccCCCCCccccccCCccCCCCCcchHHHHH
Q psy9637 78 AGSAVDDFIDKLVPLLEKGD-IIIDGG-NSEYQDTDRRSKALEAKGLLYVGCGVSGGEDGARYGPSLMPGGNPAAWPALK 155 (490)
Q Consensus 78 ~~~~v~~vl~~l~~~l~~g~-iiId~s-~~~~~~~~~~~~~l~~~gi~~ld~~vsGg~~~a~~G~~im~GG~~~a~~~v~ 155 (490)
+....+.+.. + +..|+ ++++-- +....+..++.+.++++|+.+.-+...- -...+..++
T Consensus 77 ~~~h~~~~~~-a---l~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~v~~~~r---------------~~p~~~~~~ 137 (329)
T 3evn_A 77 NQDHYKVAKA-A---LLAGKHVLVEKPFTLTYDQANELFALAESCNLFLMEAQKSV---------------FIPMTQVIK 137 (329)
T ss_dssp GGGHHHHHHH-H---HHTTCEEEEESSCCSSHHHHHHHHHHHHHTTCCEEEECSSC---------------SSHHHHHHH
T ss_pred cHHHHHHHHH-H---HHCCCeEEEccCCcCCHHHHHHHHHHHHHcCCEEEEEEccc---------------CCHHHHHHH
Confidence 9654443333 2 33454 555532 3355777777777777777554332110 023567788
Q ss_pred HHHH--hhCC
Q psy9637 156 PIFQ--KLNP 163 (490)
Q Consensus 156 ~ll~--~l~~ 163 (490)
++++ .+|.
T Consensus 138 ~~i~~g~iG~ 147 (329)
T 3evn_A 138 KLLASGEIGE 147 (329)
T ss_dssp HHHHTTTTCS
T ss_pred HHHhCCCCCC
Confidence 8887 3554
|
| >3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X | Back alignment and structure |
|---|
Probab=98.18 E-value=7.8e-06 Score=82.05 Aligned_cols=114 Identities=11% Similarity=0.162 Sum_probs=81.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCC---Ce-EEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCC
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHG---FT-VVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAG 79 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G---~~-V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~ 79 (490)
++||||||+|.||..++..|.+.+ ++ |.++|+++++.+.+.+.... ...+++++++++. +..|+|++++|+.
T Consensus 2 ~~rigiiG~G~ig~~~~~~l~~~~~~~~~l~av~d~~~~~a~~~a~~~~~---~~~~~~~~~ll~~-~~vD~V~i~tp~~ 77 (334)
T 3ohs_X 2 ALRWGIVSVGLISSDFTAVLQTLPRSEHQVVAVAARDLSRAKEFAQKHDI---PKAYGSYEELAKD-PNVEVAYVGTQHP 77 (334)
T ss_dssp CEEEEEECCSHHHHHHHHHHTTSCTTTEEEEEEECSSHHHHHHHHHHHTC---SCEESSHHHHHHC-TTCCEEEECCCGG
T ss_pred ccEEEEECchHHHHHHHHHHHhCCCCCeEEEEEEcCCHHHHHHHHHHcCC---CcccCCHHHHhcC-CCCCEEEECCCcH
Confidence 469999999999999999998754 34 45789999999988765321 1257899999974 3489999999997
Q ss_pred chHHHHHHhhcccCCCCC-EEEcCC-CCChHHHHHHHHHHHHcccccc
Q psy9637 80 SAVDDFIDKLVPLLEKGD-IIIDGG-NSEYQDTDRRSKALEAKGLLYV 125 (490)
Q Consensus 80 ~~v~~vl~~l~~~l~~g~-iiId~s-~~~~~~~~~~~~~l~~~gi~~l 125 (490)
...+.+... |+.|+ ++++-- +....+..++.+.++++|+.+.
T Consensus 78 ~H~~~~~~a----l~~GkhVl~EKP~a~~~~e~~~l~~~a~~~~~~~~ 121 (334)
T 3ohs_X 78 QHKAAVMLC----LAAGKAVLCEKPMGVNAAEVREMVTEARSRGLFLM 121 (334)
T ss_dssp GHHHHHHHH----HHTTCEEEEESSSSSSHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHH----HhcCCEEEEECCCCCCHHHHHHHHHHHHHhCCEEE
Confidence 554444332 33455 555532 3355777777787777776544
|
| >1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=6.8e-06 Score=81.27 Aligned_cols=100 Identities=14% Similarity=0.130 Sum_probs=69.2
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC--eEEEEeCChHHHHH----HHHcc---cCCCCeeccCCHHHHHhhCCCCcEEEEe
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGF--TVVAYNRTTAKVDS----FLANE---AKGTNIIGAHSLEELVKNLKKPRRVMML 75 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~--~V~v~dr~~~~~~~----l~~~g---~~~~~i~~~~s~~e~v~~l~~~dvIil~ 75 (490)
|||+|||+|.||.++|..|+.+|+ +|.+||+++++++. +.... ....++..+++ .+.++. +|+||++
T Consensus 1 MkI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d-~~a~~~---aDiVVia 76 (294)
T 1oju_A 1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGAD-YSLLKG---SEIIVVT 76 (294)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESC-GGGGTT---CSEEEEC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhhhcCCCCEEEEeCC-HHHhCC---CCEEEEC
Confidence 589999999999999999999998 99999999988752 21111 11234555556 444444 9999999
Q ss_pred cCCCc---------------hHHHHHHhhcccCCCCCEEEcCCCCChHHHH
Q psy9637 76 VKAGS---------------AVDDFIDKLVPLLEKGDIIIDGGNSEYQDTD 111 (490)
Q Consensus 76 vp~~~---------------~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~ 111 (490)
.+.+. .++++.+.+.++ .|+.+|+..|| |-++.
T Consensus 77 ag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~-~p~a~iivvsN--Pvd~~ 124 (294)
T 1oju_A 77 AGLARKPGMTRLDLAHKNAGIIKDIAKKIVEN-APESKILVVTN--PMDVM 124 (294)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTT-STTCEEEECSS--SHHHH
T ss_pred CCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhh-CCCeEEEEeCC--cchHH
Confidence 85442 123344555555 67888998887 44443
|
| >4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=98.17 E-value=1e-05 Score=81.59 Aligned_cols=114 Identities=14% Similarity=0.180 Sum_probs=79.4
Q ss_pred CCCcEEEEcccHHHHH-HHHHHHHC-CCeEE-EEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCC
Q psy9637 3 AKGDIGLIGLAVMGQN-LILNMNDH-GFTVV-AYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAG 79 (490)
Q Consensus 3 ~~~~IgiIGlG~MG~~-lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~ 79 (490)
.|+||||||+|.||.. ++..+.+. +.+|+ ++|+++++++++.++... ...++|++++++. +..|+|++|+|+.
T Consensus 22 ~mirigiIG~G~ig~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~---~~~y~d~~ell~~-~~iDaV~I~tP~~ 97 (350)
T 4had_A 22 SMLRFGIISTAKIGRDNVVPAIQDAENCVVTAIASRDLTRAREMADRFSV---PHAFGSYEEMLAS-DVIDAVYIPLPTS 97 (350)
T ss_dssp CCEEEEEESCCHHHHHTHHHHHHHCSSEEEEEEECSSHHHHHHHHHHHTC---SEEESSHHHHHHC-SSCSEEEECSCGG
T ss_pred CccEEEEEcChHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCC---CeeeCCHHHHhcC-CCCCEEEEeCCCc
Confidence 4679999999999986 45566665 56765 789999999998875431 1357899999975 4589999999997
Q ss_pred chHHHHHHhhcccCCCCC-EEEcCC-CCChHHHHHHHHHHHHccccc
Q psy9637 80 SAVDDFIDKLVPLLEKGD-IIIDGG-NSEYQDTDRRSKALEAKGLLY 124 (490)
Q Consensus 80 ~~v~~vl~~l~~~l~~g~-iiId~s-~~~~~~~~~~~~~l~~~gi~~ 124 (490)
...+-++..+ +.|+ ++++-- .....+..++.+..+++|+.+
T Consensus 98 ~H~~~~~~al----~aGkhVl~EKPla~~~~ea~~l~~~a~~~~~~l 140 (350)
T 4had_A 98 QHIEWSIKAA----DAGKHVVCEKPLALKAGDIDAVIAARDRNKVVV 140 (350)
T ss_dssp GHHHHHHHHH----HTTCEEEECSCCCSSGGGGHHHHHHHHHHTCCE
T ss_pred hhHHHHHHHH----hcCCEEEEeCCcccchhhHHHHHHHHHHcCCce
Confidence 5555444433 2344 455521 123467777777777777643
|
| >4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=98.16 E-value=6.9e-06 Score=84.90 Aligned_cols=140 Identities=16% Similarity=0.115 Sum_probs=93.0
Q ss_pred CCCCCcEEEEcccHHHHHHHHHHHHC---------CCeEE-EEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCc
Q psy9637 1 MAAKGDIGLIGLAVMGQNLILNMNDH---------GFTVV-AYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPR 70 (490)
Q Consensus 1 M~~~~~IgiIGlG~MG~~lA~~L~~~---------G~~V~-v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~d 70 (490)
|+.++||||||+|.||...+..|.+. +.+|+ ++|+++++++++.++... ...++|++++++. ++.|
T Consensus 23 Ms~klrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~elvav~d~~~~~a~~~a~~~~~---~~~y~d~~~ll~~-~~vD 98 (412)
T 4gqa_A 23 MSARLNIGLIGSGFMGQAHADAYRRAAMFYPDLPKRPHLYALADQDQAMAERHAAKLGA---EKAYGDWRELVND-PQVD 98 (412)
T ss_dssp --CEEEEEEECCSHHHHHHHHHHHHHHHHCTTSSSEEEEEEEECSSHHHHHHHHHHHTC---SEEESSHHHHHHC-TTCC
T ss_pred ccccceEEEEcCcHHHHHHHHHHHhccccccccCCCeEEEEEEcCCHHHHHHHHHHcCC---CeEECCHHHHhcC-CCCC
Confidence 66667999999999999999888764 34544 789999999998775431 1357899999975 4589
Q ss_pred EEEEecCCCchHHHHHHhhcccCCCCC-EEEcCC-CCChHHHHHHHHHHHHccccccccCCCCCccccccCCccCCCCCc
Q psy9637 71 RVMMLVKAGSAVDDFIDKLVPLLEKGD-IIIDGG-NSEYQDTDRRSKALEAKGLLYVGCGVSGGEDGARYGPSLMPGGNP 148 (490)
Q Consensus 71 vIil~vp~~~~v~~vl~~l~~~l~~g~-iiId~s-~~~~~~~~~~~~~l~~~gi~~ld~~vsGg~~~a~~G~~im~GG~~ 148 (490)
+|++|+|+....+-++..| +.|+ ++++-= .....+..++.+..+++|..+.-+... + -.
T Consensus 99 ~V~I~tp~~~H~~~~~~al----~aGkhVl~EKP~a~~~~ea~~l~~~a~~~g~~~~v~~~~------R---------~~ 159 (412)
T 4gqa_A 99 VVDITSPNHLHYTMAMAAI----AAGKHVYCEKPLAVNEQQAQEMAQAARRAGVKTMVAFNN------I---------KT 159 (412)
T ss_dssp EEEECSCGGGHHHHHHHHH----HTTCEEEEESCSCSSHHHHHHHHHHHHHHTCCEEEECGG------G---------TS
T ss_pred EEEECCCcHHHHHHHHHHH----HcCCCeEeecCCcCCHHHHHHHHHHHHHhCCeeeeccce------e---------cC
Confidence 9999999976555544433 3454 445431 224467777777777777654322110 0 12
Q ss_pred chHHHHHHHHHh--hCC
Q psy9637 149 AAWPALKPIFQK--LNP 163 (490)
Q Consensus 149 ~a~~~v~~ll~~--l~~ 163 (490)
..+..++.+++. ||.
T Consensus 160 p~~~~~k~~i~~G~iG~ 176 (412)
T 4gqa_A 160 PAALLAKQIIARGDIGE 176 (412)
T ss_dssp HHHHHHHHHHHHTTTCS
T ss_pred HHHHHHHHHHhcCCcCC
Confidence 356778888875 554
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=98.12 E-value=7.3e-06 Score=81.20 Aligned_cols=105 Identities=17% Similarity=0.192 Sum_probs=77.0
Q ss_pred ceeecC-CCCcchhHHhhhhHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhccCcchhHHHHHHHHHhcccCC-CCC
Q psy9637 349 CDWVGE-QGAGHFVKMVHNGIEYGDMQLICEAYHLMTGALGMSHDEMSAVFEDWNKGELDSFLIEITKDILKFKDT-DGA 426 (490)
Q Consensus 349 ~~~~g~-~g~gh~vkmvhngiey~~m~~~~E~~~~~~~~~~~~~~~~~~~~~~w~~g~~~s~l~~~~~~~~~~~~~-~~~ 426 (490)
+.++|+ .|+|+.+|+++|.+.+.++++++|++.+++. .|+ |...+++.++.+...||+++....-+...|. .+
T Consensus 165 ~~~~~~~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~~~-~G~---d~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~- 239 (303)
T 3g0o_A 165 VYRISDTPGAGSTVKIIHQLLAGVHIAAAAEAMALAAR-AGI---PLDVMYDVVTHAAGNSWMFENRMQHVVDGDYTPR- 239 (303)
T ss_dssp EEEEESSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTC---CHHHHHHHHTTSTTCCHHHHHHHHHHHTTCCCCS-
T ss_pred EEECCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCC---CHHHHHHHHHhcccCCHHHHhhhHHHhcCCCCCC-
Confidence 447898 8999999999999999999999999999997 788 5566677787777788888765433322231 12
Q ss_pred cchhhhccccCCCcchHHHHHHHHhcCCCchhhHHHHH
Q psy9637 427 PLVEKIKDYAGQKGTGKWTAISALDYGVPVTLIGESVF 464 (490)
Q Consensus 427 ~~l~~i~~~~~~~g~g~w~~~~a~~~~~p~~~i~~a~~ 464 (490)
..++.... .-+..++.|.++|+|+|++..+..
T Consensus 240 ~~~~~~~k------D~~~~~~~a~~~g~~~p~~~~~~~ 271 (303)
T 3g0o_A 240 SAVDIFVK------DLGLVADTAKALRFPLPLASTALN 271 (303)
T ss_dssp SBHHHHHH------HHHHHHHHHHHTTCCCHHHHHHHH
T ss_pred CchHHHHH------HHHHHHHHHHHcCCCChHHHHHHH
Confidence 22222221 234789999999999998776543
|
| >1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=7.3e-06 Score=85.46 Aligned_cols=137 Identities=11% Similarity=0.102 Sum_probs=90.9
Q ss_pred CCcEEEEcccHHHH-HHHHHHHHC-CCeE-EEEeCChHHHHHHHHcccCC-CCeeccCCHHHHHhhCCCCcEEEEecCCC
Q psy9637 4 KGDIGLIGLAVMGQ-NLILNMNDH-GFTV-VAYNRTTAKVDSFLANEAKG-TNIIGAHSLEELVKNLKKPRRVMMLVKAG 79 (490)
Q Consensus 4 ~~~IgiIGlG~MG~-~lA~~L~~~-G~~V-~v~dr~~~~~~~l~~~g~~~-~~i~~~~s~~e~v~~l~~~dvIil~vp~~ 79 (490)
++||||||+|.||. .++..|.+. +++| .++|+++++.+.+.+..... ..+..+++++++++. +.+|+|++|+|+.
T Consensus 83 ~irigiIG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~~~ll~~-~~vD~V~iatp~~ 161 (433)
T 1h6d_A 83 RFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKD-PKIDAVYIILPNS 161 (433)
T ss_dssp CEEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSGGGGGGC-TTCCEEEECSCGG
T ss_pred ceEEEEECCcHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCcccccccCCHHHHhcC-CCCCEEEEcCCch
Confidence 46899999999997 899998875 5665 58999999988877653211 012347889998863 2489999999997
Q ss_pred chHHHHHHhhcccCCCCC-EEEcC-CCCChHHHHHHHHHHHHccccccccCCCCCccccccCCccCCCCCcchHHHHHHH
Q psy9637 80 SAVDDFIDKLVPLLEKGD-IIIDG-GNSEYQDTDRRSKALEAKGLLYVGCGVSGGEDGARYGPSLMPGGNPAAWPALKPI 157 (490)
Q Consensus 80 ~~v~~vl~~l~~~l~~g~-iiId~-s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg~~~a~~G~~im~GG~~~a~~~v~~l 157 (490)
...+.++. + ++.|+ ++++. .+....+..++.+.++++|+.+..+...- -...+..++.+
T Consensus 162 ~h~~~~~~-a---l~aGk~Vl~EKPla~~~~e~~~l~~~a~~~g~~~~v~~~~R---------------~~p~~~~~k~~ 222 (433)
T 1h6d_A 162 LHAEFAIR-A---FKAGKHVMCEKPMATSVADCQRMIDAAKAANKKLMIGYRCH---------------YDPMNRAAVKL 222 (433)
T ss_dssp GHHHHHHH-H---HHTTCEEEECSSCCSSHHHHHHHHHHHHHHTCCEEECCGGG---------------GCHHHHHHHHH
T ss_pred hHHHHHHH-H---HHCCCcEEEcCCCCCCHHHHHHHHHHHHHhCCeEEEEechh---------------cCHHHHHHHHH
Confidence 54444433 2 34555 66663 23345677777777777777654332210 02356778887
Q ss_pred HHh
Q psy9637 158 FQK 160 (490)
Q Consensus 158 l~~ 160 (490)
++.
T Consensus 223 i~~ 225 (433)
T 1h6d_A 223 IRE 225 (433)
T ss_dssp HHT
T ss_pred HHc
Confidence 763
|
| >3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B* | Back alignment and structure |
|---|
Probab=98.11 E-value=1.9e-06 Score=84.78 Aligned_cols=111 Identities=18% Similarity=0.105 Sum_probs=76.2
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGF-TVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
+++.|+|.|.||.+++..|++.|. +|+++||++++.+++.+.......+. ..+++++.. .+|+||.++|.+...+
T Consensus 127 k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~~~~-~~~~~~l~~---~aDiIInaTp~gm~~~ 202 (281)
T 3o8q_A 127 ATILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAAYGEVK-AQAFEQLKQ---SYDVIINSTSASLDGE 202 (281)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTCCSEEEEEESSHHHHHHHHHHHGGGSCEE-EEEGGGCCS---CEEEEEECSCCCC---
T ss_pred CEEEEECchHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhccCCee-EeeHHHhcC---CCCEEEEcCcCCCCCC
Confidence 579999999999999999999996 99999999999988876532111121 224444433 4899999999974322
Q ss_pred HH-HHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccc
Q psy9637 84 DF-IDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLL 123 (490)
Q Consensus 84 ~v-l~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~ 123 (490)
.. +. ...+.++.+|+|+... |..|. ..+..+++|+.
T Consensus 203 ~~~l~--~~~l~~~~~V~DlvY~-P~~T~-ll~~A~~~G~~ 239 (281)
T 3o8q_A 203 LPAID--PVIFSSRSVCYDMMYG-KGYTV-FNQWARQHGCA 239 (281)
T ss_dssp -CSCC--GGGEEEEEEEEESCCC-SSCCH-HHHHHHHTTCS
T ss_pred CCCCC--HHHhCcCCEEEEecCC-CccCH-HHHHHHHCCCC
Confidence 11 10 1246678999999875 44444 33566777764
|
| >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* | Back alignment and structure |
|---|
Probab=98.09 E-value=1.1e-05 Score=80.87 Aligned_cols=97 Identities=13% Similarity=0.188 Sum_probs=67.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCC-eEEEEeCChHHHHH----HHHcc---cCCCCeeccCCHHHHHhhCCCCcEEEEe
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGF-TVVAYNRTTAKVDS----FLANE---AKGTNIIGAHSLEELVKNLKKPRRVMML 75 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~----l~~~g---~~~~~i~~~~s~~e~v~~l~~~dvIil~ 75 (490)
++||+|||+|.||.++|..|+.+|+ +|++||+++++++. +.... ....++..+++. +.++ .+|+||++
T Consensus 7 ~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~t~d~-~a~~---~aDiVIia 82 (324)
T 3gvi_A 7 RNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFTGANDY-AAIE---GADVVIVT 82 (324)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESSG-GGGT---TCSEEEEC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCchhHHHHHHHHhchhhhcCCCCEEEEeCCH-HHHC---CCCEEEEc
Confidence 4699999999999999999999999 99999999887652 22111 012345555665 3344 49999999
Q ss_pred cCCCc---------------hHHHHHHhhcccCCCCCEEEcCCCC
Q psy9637 76 VKAGS---------------AVDDFIDKLVPLLEKGDIIIDGGNS 105 (490)
Q Consensus 76 vp~~~---------------~v~~vl~~l~~~l~~g~iiId~s~~ 105 (490)
...+. .+++++..+..+ .|+.++|..+|-
T Consensus 83 ag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~-~p~a~iivvtNP 126 (324)
T 3gvi_A 83 AGVPRKPGMSRDDLLGINLKVMEQVGAGIKKY-APEAFVICITNP 126 (324)
T ss_dssp CSCCCC-----CHHHHHHHHHHHHHHHHHHHH-CTTCEEEECCSS
T ss_pred cCcCCCCCCCHHHHHHhhHHHHHHHHHHHHHH-CCCeEEEecCCC
Confidence 75432 133444555555 478888888873
|
| >3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=98.08 E-value=1.6e-05 Score=81.54 Aligned_cols=136 Identities=19% Similarity=0.219 Sum_probs=92.5
Q ss_pred CCcEEEEccc-HHHHHHHHHHHHC-CCeEE-EEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCc
Q psy9637 4 KGDIGLIGLA-VMGQNLILNMNDH-GFTVV-AYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGS 80 (490)
Q Consensus 4 ~~~IgiIGlG-~MG~~lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~ 80 (490)
++||||||+| .||..++..|.+. +++|+ ++|+++++.+.+.+... +..++|++++++. +++|+|++++|+..
T Consensus 2 ~~rigiiG~G~~~~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g----~~~~~~~~ell~~-~~vD~V~i~tp~~~ 76 (387)
T 3moi_A 2 KIRFGICGLGFAGSVLMAPAMRHHPDAQIVAACDPNEDVRERFGKEYG----IPVFATLAEMMQH-VQMDAVYIASPHQF 76 (387)
T ss_dssp CEEEEEECCSHHHHTTHHHHHHHCTTEEEEEEECSCHHHHHHHHHHHT----CCEESSHHHHHHH-SCCSEEEECSCGGG
T ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCCeEEEEEEeCCHHHHHHHHHHcC----CCeECCHHHHHcC-CCCCEEEEcCCcHH
Confidence 4689999999 9999999999875 56655 78999999888776532 2368899999975 34899999999975
Q ss_pred hHHHHHHhhcccCCCCC-EEEcCC-CCChHHHHHHHHHHHHccccccccCCCCCccccccCCccCCCCCcchHHHHHHHH
Q psy9637 81 AVDDFIDKLVPLLEKGD-IIIDGG-NSEYQDTDRRSKALEAKGLLYVGCGVSGGEDGARYGPSLMPGGNPAAWPALKPIF 158 (490)
Q Consensus 81 ~v~~vl~~l~~~l~~g~-iiId~s-~~~~~~~~~~~~~l~~~gi~~ld~~vsGg~~~a~~G~~im~GG~~~a~~~v~~ll 158 (490)
..+.+.. + |+.|+ ++++-- .....+..++.+.++++|+.+.-+.... -...+..+++++
T Consensus 77 H~~~~~~-a---l~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~g~~~~v~~~~R---------------~~p~~~~~k~~i 137 (387)
T 3moi_A 77 HCEHVVQ-A---SEQGLHIIVEKPLTLSRDEADRMIEAVERAGVHLVVGTSRS---------------HDPVVRTLRAIV 137 (387)
T ss_dssp HHHHHHH-H---HHTTCEEEECSCCCSCHHHHHHHHHHHHHHTCCEEECCCGG---------------GSHHHHHHHHHH
T ss_pred HHHHHHH-H---HHCCCceeeeCCccCCHHHHHHHHHHHHHhCCeEEEEeccc---------------cCHHHHHHHHHH
Confidence 5444333 2 33455 455532 3345777777777777776543222110 013567788888
Q ss_pred Hh--hCC
Q psy9637 159 QK--LNP 163 (490)
Q Consensus 159 ~~--l~~ 163 (490)
+. +|.
T Consensus 138 ~~g~iG~ 144 (387)
T 3moi_A 138 QEGSVGR 144 (387)
T ss_dssp HHCTTCC
T ss_pred hcCCCCC
Confidence 75 554
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=98.07 E-value=2.9e-06 Score=83.93 Aligned_cols=108 Identities=17% Similarity=0.126 Sum_probs=73.6
Q ss_pred ceeecCCCCcchhHHhhhhHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhc---cCcchhHHHHHHHHHhcccCCCC
Q psy9637 349 CDWVGEQGAGHFVKMVHNGIEYGDMQLICEAYHLMTGALGMSHDEMSAVFEDWN---KGELDSFLIEITKDILKFKDTDG 425 (490)
Q Consensus 349 ~~~~g~~g~gh~vkmvhngiey~~m~~~~E~~~~~~~~~~~~~~~~~~~~~~w~---~g~~~s~l~~~~~~~~~~~~~~~ 425 (490)
+.|+|+.|+||.+|+++|.+.++++++++|++.++++ +|++.+++.++|+.|. .|...||+.+ ...++.. .+.|
T Consensus 168 ~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~E~~~l~~~-~G~d~~~~~~~~~~~~~i~~~~~~s~~~~-~~~~~~~-~~~~ 244 (296)
T 3qha_A 168 VIHAGEPGAGTRMKLARNMLTFTSYAAACEAMKLAEA-AGLDLQALGRVVRHTDALTGGPGAIMVRD-NMKDLEP-DNFL 244 (296)
T ss_dssp EEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCCHHHHHHHHHHHHHHHCCGGGGCCCS-SCSCCCT-TSTT
T ss_pred eEEcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHhhhcchHHHHhcCcccCHHhh-chhhhhc-CCCC
Confidence 3478999999999999999999999999999999997 8997777766655553 3456677655 3223221 1111
Q ss_pred Ccch----hhhccccCCCcchHHHHHHHHhcCCCchhhHHHHHH
Q psy9637 426 APLV----EKIKDYAGQKGTGKWTAISALDYGVPVTLIGESVFS 465 (490)
Q Consensus 426 ~~~l----~~i~~~~~~~g~g~w~~~~a~~~~~p~~~i~~a~~~ 465 (490)
.... +.... .-+-..+.|.++|+|+|++..+...
T Consensus 245 f~~~~~~~~~~~K------D~~~~~~~a~~~g~~~p~~~~~~~~ 282 (296)
T 3qha_A 245 YQPFLHTRGLGEK------DLSLALALGEAVSVDLPLARLAYEG 282 (296)
T ss_dssp HHHHHHHHHHHHH------HHHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred CchhhhhhHHHHH------HHHHHHHHHHHcCCCChHHHHHHHH
Confidence 1110 11110 1234568899999999988877644
|
| >3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A* | Back alignment and structure |
|---|
Probab=98.07 E-value=3.7e-06 Score=86.68 Aligned_cols=90 Identities=11% Similarity=0.119 Sum_probs=69.7
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
++|+|+|+|.+|..+|..|...|.+|+++|+++.+.......+. ...++++++.. +|+|++|..+. .
T Consensus 221 ktV~ViG~G~IGk~vA~~Lra~Ga~Viv~D~dp~ra~~A~~~G~------~v~~Leeal~~---ADIVi~atgt~----~ 287 (435)
T 3gvp_A 221 KQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDPICALQACMDGF------RLVKLNEVIRQ---VDIVITCTGNK----N 287 (435)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTC------EECCHHHHTTT---CSEEEECSSCS----C
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEEeCChhhhHHHHHcCC------EeccHHHHHhc---CCEEEECCCCc----c
Confidence 58999999999999999999999999999999876655444443 24678888776 99999973222 2
Q ss_pred HH-HhhcccCCCCCEEEcCCCCCh
Q psy9637 85 FI-DKLVPLLEKGDIIIDGGNSEY 107 (490)
Q Consensus 85 vl-~~l~~~l~~g~iiId~s~~~~ 107 (490)
++ .+.+..+++|.+||+.+....
T Consensus 288 lI~~e~l~~MK~gailINvgrg~~ 311 (435)
T 3gvp_A 288 VVTREHLDRMKNSCIVCNMGHSNT 311 (435)
T ss_dssp SBCHHHHHHSCTTEEEEECSSTTT
T ss_pred cCCHHHHHhcCCCcEEEEecCCCc
Confidence 33 245566789999999998654
|
| >2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A* | Back alignment and structure |
|---|
Probab=98.06 E-value=3.7e-06 Score=74.26 Aligned_cols=103 Identities=15% Similarity=0.204 Sum_probs=75.2
Q ss_pred CcEEEEcc----cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCc
Q psy9637 5 GDIGLIGL----AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGS 80 (490)
Q Consensus 5 ~~IgiIGl----G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~ 80 (490)
.+|+|||+ |.+|..++.+|.+.||+ +|++|+.. +.+ ..+..+.|++|+... +|++++++|+ .
T Consensus 23 ~~iaVVGas~~~g~~G~~~~~~l~~~G~~--v~~Vnp~~-~~i-------~G~~~y~sl~~l~~~---vDlvvi~vp~-~ 88 (144)
T 2d59_A 23 KKIALVGASPKPERDANIVMKYLLEHGYD--VYPVNPKY-EEV-------LGRKCYPSVLDIPDK---IEVVDLFVKP-K 88 (144)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHTTCE--EEEECTTC-SEE-------TTEECBSSGGGCSSC---CSEEEECSCH-H
T ss_pred CEEEEEccCCCCCchHHHHHHHHHHCCCE--EEEECCCC-CeE-------CCeeccCCHHHcCCC---CCEEEEEeCH-H
Confidence 57999999 79999999999999997 56666653 111 123467788887765 8999999999 5
Q ss_pred hHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccc
Q psy9637 81 AVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVG 126 (490)
Q Consensus 81 ~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld 126 (490)
.+.++++++...- ...+++..++. ..+..+.+++.|++++.
T Consensus 89 ~~~~vv~~~~~~g-i~~i~~~~g~~----~~~l~~~a~~~Gi~vvG 129 (144)
T 2d59_A 89 LTMEYVEQAIKKG-AKVVWFQYNTY----NREASKKADEAGLIIVA 129 (144)
T ss_dssp HHHHHHHHHHHHT-CSEEEECTTCC----CHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHcC-CCEEEECCCch----HHHHHHHHHHcCCEEEc
Confidence 8888888776543 33566654442 45566777888988874
|
| >3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=98.06 E-value=3.6e-06 Score=84.91 Aligned_cols=112 Identities=15% Similarity=0.178 Sum_probs=75.4
Q ss_pred CCcEEEEcccHHHHHHHHH-HHH--CCCeEE-EEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCC
Q psy9637 4 KGDIGLIGLAVMGQNLILN-MND--HGFTVV-AYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAG 79 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~-L~~--~G~~V~-v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~ 79 (490)
++||||||+|.||..+... +.. .+++|+ ++|+++++.+.+.+.. .+..++|++++++. +++|+|++|+|+.
T Consensus 2 ~~rvgiiG~G~~g~~~~~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~----~~~~~~~~~~ll~~-~~~D~V~i~tp~~ 76 (345)
T 3f4l_A 2 VINCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYS----HIHFTSDLDEVLND-PDVKLVVVCTHAD 76 (345)
T ss_dssp CEEEEEECCSHHHHHHTHHHHTTCTTTEEEEEEECSSCCGGGGSGGGT----TCEEESCTHHHHTC-TTEEEEEECSCGG
T ss_pred ceEEEEEecCHHHHHHHHHHHHhcCCCeEEEEEEcCCHhHHHHHHhcC----CCceECCHHHHhcC-CCCCEEEEcCChH
Confidence 4689999999999975444 432 367776 8999987664332221 23468999999875 3479999999997
Q ss_pred chHHHHHHhhcccCCCCCEEEcCC--CCChHHHHHHHHHHHHccccc
Q psy9637 80 SAVDDFIDKLVPLLEKGDIIIDGG--NSEYQDTDRRSKALEAKGLLY 124 (490)
Q Consensus 80 ~~v~~vl~~l~~~l~~g~iiId~s--~~~~~~~~~~~~~l~~~gi~~ 124 (490)
...+.+... +..|+.|+.-- +....+..++.+.++++|+.+
T Consensus 77 ~h~~~~~~a----l~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~g~~~ 119 (345)
T 3f4l_A 77 SHFEYAKRA----LEAGKNVLVEKPFTPTLAQAKELFALAKSKGLTV 119 (345)
T ss_dssp GHHHHHHHH----HHTTCEEEECSSSCSSHHHHHHHHHHHHHHTCCE
T ss_pred HHHHHHHHH----HHcCCcEEEeCCCCCCHHHHHHHHHHHHHcCCeE
Confidence 555444332 34566555422 334577777778777777755
|
| >3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.06 E-value=1.8e-05 Score=80.50 Aligned_cols=110 Identities=18% Similarity=0.183 Sum_probs=75.3
Q ss_pred CCcEEEEcccHHHHH-HHHHHHHC-CCeEE-EEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCc
Q psy9637 4 KGDIGLIGLAVMGQN-LILNMNDH-GFTVV-AYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGS 80 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~-lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~ 80 (490)
++||||||+|.||.. .+..|.+. +++|+ ++|+++++++. ... .+..+++++++++. +..|+|++|+|+..
T Consensus 7 ~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~--~~~----~~~~~~~~~~ll~~-~~~D~V~i~tp~~~ 79 (364)
T 3e82_A 7 TINIALIGYGFVGKTFHAPLIRSVPGLNLAFVASRDEEKVKR--DLP----DVTVIASPEAAVQH-PDVDLVVIASPNAT 79 (364)
T ss_dssp CEEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHHH--HCT----TSEEESCHHHHHTC-TTCSEEEECSCGGG
T ss_pred cceEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHHh--hCC----CCcEECCHHHHhcC-CCCCEEEEeCChHH
Confidence 468999999999997 66666654 67775 78999987652 211 23468999999874 34899999999975
Q ss_pred hHHHHHHhhcccCCCCCEEE-cCC-CCChHHHHHHHHHHHHccccc
Q psy9637 81 AVDDFIDKLVPLLEKGDIII-DGG-NSEYQDTDRRSKALEAKGLLY 124 (490)
Q Consensus 81 ~v~~vl~~l~~~l~~g~iiI-d~s-~~~~~~~~~~~~~l~~~gi~~ 124 (490)
..+.+... +..|+-|+ +-- +....+..++.+.++++|+.+
T Consensus 80 H~~~~~~a----l~aGk~Vl~EKPla~~~~e~~~l~~~a~~~g~~~ 121 (364)
T 3e82_A 80 HAPLARLA----LNAGKHVVVDKPFTLDMQEARELIALAEEKQRLL 121 (364)
T ss_dssp HHHHHHHH----HHTTCEEEECSCSCSSHHHHHHHHHHHHHTTCCE
T ss_pred HHHHHHHH----HHCCCcEEEeCCCcCCHHHHHHHHHHHHHhCCeE
Confidence 55444332 34555444 431 335567777777777777654
|
| >1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A* | Back alignment and structure |
|---|
Probab=98.06 E-value=2e-06 Score=84.07 Aligned_cols=116 Identities=18% Similarity=0.137 Sum_probs=75.0
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
+++.|+|+|.||.+++..|++.|++|+++||++++.+.+.+.......+. ..+++++.+ ..+|+||.++|.+... .
T Consensus 120 ~~vlvlGaGg~g~a~a~~L~~~G~~v~v~~R~~~~a~~l~~~~~~~~~~~-~~~~~~~~~--~~~DivIn~t~~~~~~-~ 195 (272)
T 1p77_A 120 QHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYGNIQ-AVSMDSIPL--QTYDLVINATSAGLSG-G 195 (272)
T ss_dssp CEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGSCEE-EEEGGGCCC--SCCSEEEECCCC------
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHccccCCeE-EeeHHHhcc--CCCCEEEECCCCCCCC-C
Confidence 58999999999999999999999999999999999888875421100121 123333211 2589999999987432 2
Q ss_pred HHHhhc-ccCCCCCEEEcCCCCChHHHHHHHHHHHHcccc-ccc
Q psy9637 85 FIDKLV-PLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLL-YVG 126 (490)
Q Consensus 85 vl~~l~-~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~-~ld 126 (490)
+ ..+. ..+.++.+++|.......++. ..+..+++|.. +++
T Consensus 196 ~-~~i~~~~l~~~~~v~D~~y~p~~~t~-ll~~a~~~G~~~~v~ 237 (272)
T 1p77_A 196 T-ASVDAEILKLGSAFYDMQYAKGTDTP-FIALCKSLGLTNVSD 237 (272)
T ss_dssp ---CCCHHHHHHCSCEEESCCCTTSCCH-HHHHHHHTTCCCEEC
T ss_pred C-CCCCHHHcCCCCEEEEeeCCCCcCCH-HHHHHHHcCCCEeeC
Confidence 1 1111 124568899999885433144 44566777875 554
|
| >3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.05 E-value=1.9e-05 Score=80.19 Aligned_cols=113 Identities=12% Similarity=0.174 Sum_probs=78.9
Q ss_pred CCcEEEEcccHHHH-HHHHHHHHCCCeEE-EEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCch
Q psy9637 4 KGDIGLIGLAVMGQ-NLILNMNDHGFTVV-AYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSA 81 (490)
Q Consensus 4 ~~~IgiIGlG~MG~-~lA~~L~~~G~~V~-v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~ 81 (490)
++||||||+|.++. .++..+...+++|+ ++|+++++++.+.+.... ...+++++++++. ++.|+|++++|+...
T Consensus 26 ~irvgiiG~G~~~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~~~---~~~~~~~~~ll~~-~~vD~V~I~tp~~~H 101 (361)
T 3u3x_A 26 ELRFAAVGLNHNHIYGQVNCLLRAGARLAGFHEKDDALAAEFSAVYAD---ARRIATAEEILED-ENIGLIVSAAVSSER 101 (361)
T ss_dssp CCEEEEECCCSTTHHHHHHHHHHTTCEEEEEECSCHHHHHHHHHHSSS---CCEESCHHHHHTC-TTCCEEEECCCHHHH
T ss_pred CcEEEEECcCHHHHHHHHHHhhcCCcEEEEEEcCCHHHHHHHHHHcCC---CcccCCHHHHhcC-CCCCEEEEeCChHHH
Confidence 36899999999995 57777777889855 789999999988765321 2368999999875 347999999998644
Q ss_pred HHHHHHhhcccCCCCC-EEEcCC-CCChHHHHHHHHHHHHccccc
Q psy9637 82 VDDFIDKLVPLLEKGD-IIIDGG-NSEYQDTDRRSKALEAKGLLY 124 (490)
Q Consensus 82 v~~vl~~l~~~l~~g~-iiId~s-~~~~~~~~~~~~~l~~~gi~~ 124 (490)
.+-+... |+.|+ ++++-- +....+..++.+.++++|+.+
T Consensus 102 ~~~~~~a----l~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~l 142 (361)
T 3u3x_A 102 AELAIRA----MQHGKDVLVDKPGMTSFDQLAKLRRVQAETGRIF 142 (361)
T ss_dssp HHHHHHH----HHTTCEEEEESCSCSSHHHHHHHHHHHHTTCCCE
T ss_pred HHHHHHH----HHCCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEE
Confidence 4433332 33454 555532 234567777777777666543
|
| >1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=98.05 E-value=1.8e-05 Score=83.32 Aligned_cols=74 Identities=18% Similarity=0.254 Sum_probs=54.7
Q ss_pred CCCCCcEEEEcccHHH--HHHHHHHHHC----CCeEEEEeCChHHHHHHHHc-------ccCCCCeeccCCHHHHHhhCC
Q psy9637 1 MAAKGDIGLIGLAVMG--QNLILNMNDH----GFTVVAYNRTTAKVDSFLAN-------EAKGTNIIGAHSLEELVKNLK 67 (490)
Q Consensus 1 M~~~~~IgiIGlG~MG--~~lA~~L~~~----G~~V~v~dr~~~~~~~l~~~-------g~~~~~i~~~~s~~e~v~~l~ 67 (490)
|+ ++||+|||.|.|| .+++..|+.. |++|++||+++++++..... .....++..++++.+.++.
T Consensus 1 m~-~~KIaVIGAGsVg~g~ala~~La~~~~l~~~eV~L~Di~~e~l~~~~~~~~~~l~~~~~~~~I~~ttD~~eal~d-- 77 (480)
T 1obb_A 1 MP-SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIID-- 77 (480)
T ss_dssp -C-CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTT--
T ss_pred CC-CCEEEEECCCchHHHHHHHHHHHhcCcCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCCCcEEEEECCHHHHhCC--
Confidence 63 5799999999985 6567788754 89999999999887753321 1113457777888777766
Q ss_pred CCcEEEEecCC
Q psy9637 68 KPRRVMMLVKA 78 (490)
Q Consensus 68 ~~dvIil~vp~ 78 (490)
+|+||+++|.
T Consensus 78 -AD~VIiaagv 87 (480)
T 1obb_A 78 -ADFVINTAMV 87 (480)
T ss_dssp -CSEEEECCCT
T ss_pred -CCEEEECCCc
Confidence 9999999975
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=98.05 E-value=5.1e-05 Score=67.04 Aligned_cols=103 Identities=17% Similarity=0.266 Sum_probs=67.0
Q ss_pred CCCCCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCC-hHHHHHHHHcccCCCCee-c-cCCHHHHHh-hCCCCcEEEEec
Q psy9637 1 MAAKGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRT-TAKVDSFLANEAKGTNII-G-AHSLEELVK-NLKKPRRVMMLV 76 (490)
Q Consensus 1 M~~~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~-~~~~~~l~~~g~~~~~i~-~-~~s~~e~v~-~l~~~dvIil~v 76 (490)
|. .++|.|+|.|.+|..++..|.+.|++|++.|++ +++.+.+.+....+..+. . ..+++.+.+ .++.+|.|++++
T Consensus 1 ~~-~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~ 79 (153)
T 1id1_A 1 HR-KDHFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALS 79 (153)
T ss_dssp CC-CSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECS
T ss_pred CC-CCcEEEECCCHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhhcCCCeEEEcCCCCHHHHHHcChhhCCEEEEec
Confidence 53 358999999999999999999999999999998 465555543211111111 1 234444433 367799999999
Q ss_pred CCCchHHHHHHhhcccC-CCCCEEEcCCCC
Q psy9637 77 KAGSAVDDFIDKLVPLL-EKGDIIIDGGNS 105 (490)
Q Consensus 77 p~~~~v~~vl~~l~~~l-~~g~iiId~s~~ 105 (490)
+++ .....+..+...+ +...+|+...+.
T Consensus 80 ~~d-~~n~~~~~~a~~~~~~~~ii~~~~~~ 108 (153)
T 1id1_A 80 DND-ADNAFVVLSAKDMSSDVKTVLAVSDS 108 (153)
T ss_dssp SCH-HHHHHHHHHHHHHTSSSCEEEECSSG
T ss_pred CCh-HHHHHHHHHHHHHCCCCEEEEEECCH
Confidence 986 4444444444444 345677766553
|
| >2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=2.2e-05 Score=82.01 Aligned_cols=114 Identities=15% Similarity=0.123 Sum_probs=79.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHHC-CCeE-EEEeCChHHHHHHHHc----ccCCCCeeccC----CHHHHHhhCCCCcEEE
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDH-GFTV-VAYNRTTAKVDSFLAN----EAKGTNIIGAH----SLEELVKNLKKPRRVM 73 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~-G~~V-~v~dr~~~~~~~l~~~----g~~~~~i~~~~----s~~e~v~~l~~~dvIi 73 (490)
++||||||+|.||...+..|.+. |++| .++|+++++++.+.+. +.. ....++ +++++++. ++.|+|+
T Consensus 20 ~~rvgiIG~G~~g~~h~~~l~~~~~~~lvav~d~~~~~~~~~a~~~~~~g~~--~~~~~~~~~~~~~~ll~~-~~vD~V~ 96 (444)
T 2ixa_A 20 KVRIAFIAVGLRGQTHVENMARRDDVEIVAFADPDPYMVGRAQEILKKNGKK--PAKVFGNGNDDYKNMLKD-KNIDAVF 96 (444)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSCHHHHHHHHHHHHHTTCC--CCEEECSSTTTHHHHTTC-TTCCEEE
T ss_pred CceEEEEecCHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHHHhcCCC--CCceeccCCCCHHHHhcC-CCCCEEE
Confidence 46899999999999999999875 6775 4899999998887652 211 123466 89999874 3489999
Q ss_pred EecCCCchHHHHHHhhcccCCCCC-EEEcC-CCCChHHHHHHHHHHHHccccc
Q psy9637 74 MLVKAGSAVDDFIDKLVPLLEKGD-IIIDG-GNSEYQDTDRRSKALEAKGLLY 124 (490)
Q Consensus 74 l~vp~~~~v~~vl~~l~~~l~~g~-iiId~-s~~~~~~~~~~~~~l~~~gi~~ 124 (490)
+|+|+....+.++.. |+.|+ ++++- -.....+..++.+.++++|..+
T Consensus 97 i~tp~~~h~~~~~~a----l~aGkhV~~EKP~a~~~~ea~~l~~~a~~~g~~~ 145 (444)
T 2ixa_A 97 VSSPWEWHHEHGVAA----MKAGKIVGMEVSGAITLEECWDYVKVSEQTGVPL 145 (444)
T ss_dssp ECCCGGGHHHHHHHH----HHTTCEEEECCCCCSSHHHHHHHHHHHHHHCCCE
T ss_pred EcCCcHHHHHHHHHH----HHCCCeEEEeCCCcCCHHHHHHHHHHHHHhCCeE
Confidence 999997555444433 33565 55553 2234567777777777777654
|
| >3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.03 E-value=1.3e-05 Score=77.06 Aligned_cols=96 Identities=15% Similarity=0.154 Sum_probs=63.2
Q ss_pred CCCCCcEEEEcccHHHHHHHHHHHHCCCeEE-EEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCC
Q psy9637 1 MAAKGDIGLIGLAVMGQNLILNMNDHGFTVV-AYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAG 79 (490)
Q Consensus 1 M~~~~~IgiIGlG~MG~~lA~~L~~~G~~V~-v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~ 79 (490)
|+ ||||+|+|+|+||+.++..+.+.+++++ ++|++++. ..+ +..+++++++. . +|+||-..++
T Consensus 1 M~-MmkI~ViGaGrMG~~i~~~l~~~~~eLva~~d~~~~~-----~~g-----v~v~~dl~~l~-~---~DVvIDft~p- 64 (243)
T 3qy9_A 1 MA-SMKILLIGYGAMNQRVARLAEEKGHEIVGVIENTPKA-----TTP-----YQQYQHIADVK-G---ADVAIDFSNP- 64 (243)
T ss_dssp ---CCEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCC-------CC-----SCBCSCTTTCT-T---CSEEEECSCH-
T ss_pred CC-ceEEEEECcCHHHHHHHHHHHhCCCEEEEEEecCccc-----cCC-----CceeCCHHHHh-C---CCEEEEeCCh-
Confidence 63 6899999999999999999999877766 48988662 122 33567787766 4 8998844433
Q ss_pred chHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHH
Q psy9637 80 SAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKAL 117 (490)
Q Consensus 80 ~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l 117 (490)
..+.+.+. +..|.-+|.++|.......+..+.+
T Consensus 65 ~a~~~~~~-----l~~g~~vVigTTG~s~e~~~~l~~a 97 (243)
T 3qy9_A 65 NLLFPLLD-----EDFHLPLVVATTGEKEKLLNKLDEL 97 (243)
T ss_dssp HHHHHHHT-----SCCCCCEEECCCSSHHHHHHHHHHH
T ss_pred HHHHHHHH-----HhcCCceEeCCCCCCHHHHHHHHHH
Confidence 23444332 6778777778777644333333433
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.02 E-value=1.3e-05 Score=79.62 Aligned_cols=103 Identities=15% Similarity=0.163 Sum_probs=74.1
Q ss_pred ceeecCCCCcchhHHhhhhHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhccCcchhHHHHHHHHHhcccCC-CCCc
Q psy9637 349 CDWVGEQGAGHFVKMVHNGIEYGDMQLICEAYHLMTGALGMSHDEMSAVFEDWNKGELDSFLIEITKDILKFKDT-DGAP 427 (490)
Q Consensus 349 ~~~~g~~g~gh~vkmvhngiey~~m~~~~E~~~~~~~~~~~~~~~~~~~~~~w~~g~~~s~l~~~~~~~~~~~~~-~~~~ 427 (490)
+.++|+.|+||.+|+++|.+.++++.+++|++.+++. .|++. ..+++..+.+...||+.+.....+...|. .+.
T Consensus 178 ~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~~~-~G~d~---~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~f- 252 (310)
T 3doj_A 178 SFYLGQVGNGAKMKLIVNMIMGSMMNAFSEGLVLADK-SGLSS---DTLLDILDLGAMTNPMFKGKGPSMNKSSYPPAF- 252 (310)
T ss_dssp EEECSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTSCH---HHHHHHHHHSTTCCHHHHHHHHHHHTTCCCCSS-
T ss_pred EEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCH---HHHHHHHHhcccccHHHHHHhhhhhcCCCCCCc-
Confidence 4578999999999999999999999999999999997 88854 55555566677778877655443332231 121
Q ss_pred chhh-hccccCCCcchHHHHHHHHhcCCCchhhHHHH
Q psy9637 428 LVEK-IKDYAGQKGTGKWTAISALDYGVPVTLIGESV 463 (490)
Q Consensus 428 ~l~~-i~~~~~~~g~g~w~~~~a~~~~~p~~~i~~a~ 463 (490)
.++. .+| -+-.++.|.++|+|+|++..+.
T Consensus 253 ~~~~~~KD-------l~~~~~~a~~~g~~~p~~~~~~ 282 (310)
T 3doj_A 253 PLKHQQKD-------MRLALALGDENAVSMPVAAAAN 282 (310)
T ss_dssp BHHHHHHH-------HHHHHHHHHHTTCCCHHHHHHH
T ss_pred cHHHHHHH-------HHHHHHHHHHcCCCChHHHHHH
Confidence 2222 222 2457888999999999776654
|
| >3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=98.02 E-value=1.8e-05 Score=79.21 Aligned_cols=96 Identities=13% Similarity=0.115 Sum_probs=65.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHH---cc----cCCCCeeccCCHHHHHhhCCCCcEEEEe
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGF-TVVAYNRTTAKVDSFLA---NE----AKGTNIIGAHSLEELVKNLKKPRRVMML 75 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~---~g----~~~~~i~~~~s~~e~v~~l~~~dvIil~ 75 (490)
++||+|||+|.||.++|..|+.+|+ +|+++|+++++++.... .. ....++..+++. +. ++.+|+||++
T Consensus 5 ~~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~~~~~g~a~dL~~~~~~~~~~~~v~~t~d~-~a---~~~aDvVIi~ 80 (321)
T 3p7m_A 5 RKKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQGMPNGKALDLLQTCPIEGVDFKVRGTNDY-KD---LENSDVVIVT 80 (321)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCG-GG---GTTCSEEEEC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCChHHHHHHHHHHHhhhhhcCCCcEEEEcCCH-HH---HCCCCEEEEc
Confidence 4799999999999999999999998 99999999887653221 11 012234444554 33 3349999999
Q ss_pred cCCCc---------------hHHHHHHhhcccCCCCCEEEcCCC
Q psy9637 76 VKAGS---------------AVDDFIDKLVPLLEKGDIIIDGGN 104 (490)
Q Consensus 76 vp~~~---------------~v~~vl~~l~~~l~~g~iiId~s~ 104 (490)
.+.+. .+++++..+..+- |+.++|..+|
T Consensus 81 ag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~vivvtN 123 (321)
T 3p7m_A 81 AGVPRKPGMSRDDLLGINIKVMQTVGEGIKHNC-PNAFVICITN 123 (321)
T ss_dssp CSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECCS
T ss_pred CCcCCCCCCCHHHHHHHhHHHHHHHHHHHHHHC-CCcEEEEecC
Confidence 75431 1334445555554 7778888876
|
| >3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=98.01 E-value=1.5e-05 Score=82.39 Aligned_cols=90 Identities=9% Similarity=0.027 Sum_probs=70.1
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
++|+|||+|.+|..+|+.+...|.+|+++|+++.+.......+.. ..++++++.. +|+|+++.++...+.
T Consensus 248 KTVgVIG~G~IGr~vA~~lrafGa~Viv~d~dp~~a~~A~~~G~~------vv~LeElL~~---ADIVv~atgt~~lI~- 317 (464)
T 3n58_A 248 KVAVVCGYGDVGKGSAQSLAGAGARVKVTEVDPICALQAAMDGFE------VVTLDDAAST---ADIVVTTTGNKDVIT- 317 (464)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCE------ECCHHHHGGG---CSEEEECCSSSSSBC-
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCcchhhHHHhcCce------eccHHHHHhh---CCEEEECCCCccccC-
Confidence 589999999999999999999999999999998765554444432 4578888887 999998865432211
Q ss_pred HHHhhcccCCCCCEEEcCCCCC
Q psy9637 85 FIDKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 85 vl~~l~~~l~~g~iiId~s~~~ 106 (490)
.+.+..+++|.+||+.+...
T Consensus 318 --~e~l~~MK~GAILINvGRgd 337 (464)
T 3n58_A 318 --IDHMRKMKDMCIVGNIGHFD 337 (464)
T ss_dssp --HHHHHHSCTTEEEEECSSST
T ss_pred --HHHHhcCCCCeEEEEcCCCC
Confidence 34555678999999998764
|
| >3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A | Back alignment and structure |
|---|
Probab=98.00 E-value=2.3e-05 Score=79.53 Aligned_cols=113 Identities=15% Similarity=0.279 Sum_probs=76.3
Q ss_pred CC-CCCcEEEEcccHHHHH-HHHHHHHC-CCeEE-EEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEec
Q psy9637 1 MA-AKGDIGLIGLAVMGQN-LILNMNDH-GFTVV-AYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLV 76 (490)
Q Consensus 1 M~-~~~~IgiIGlG~MG~~-lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~v 76 (490)
|+ .++||||||+|.||.. .+..|.+. +++|+ ++|+++++..+ +.+ .+..+++++++++. +..|+|++|+
T Consensus 1 M~m~~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~--~~~----~~~~~~~~~~ll~~-~~vD~V~i~t 73 (358)
T 3gdo_A 1 MSLDTIKVGILGYGLSGSVFHGPLLDVLDEYQISKIMTSRTEEVKR--DFP----DAEVVHELEEITND-PAIELVIVTT 73 (358)
T ss_dssp -CTTCEEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECSCHHHHHH--HCT----TSEEESSTHHHHTC-TTCCEEEECS
T ss_pred CCCCcceEEEEccCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHHh--hCC----CCceECCHHHHhcC-CCCCEEEEcC
Confidence 65 4579999999999997 67777655 67765 78999876332 111 23468999999874 3489999999
Q ss_pred CCCchHHHHHHhhcccCCCCC-EEEcCC-CCChHHHHHHHHHHHHccccc
Q psy9637 77 KAGSAVDDFIDKLVPLLEKGD-IIIDGG-NSEYQDTDRRSKALEAKGLLY 124 (490)
Q Consensus 77 p~~~~v~~vl~~l~~~l~~g~-iiId~s-~~~~~~~~~~~~~l~~~gi~~ 124 (490)
|+....+.+... |+.|+ ++++-- +....+..++.+.++++|+.+
T Consensus 74 p~~~H~~~~~~a----l~aGkhVl~EKPla~~~~e~~~l~~~a~~~g~~~ 119 (358)
T 3gdo_A 74 PSGLHYEHTMAC----IQAGKHVVMEKPMTATAEEGETLKRAADEKGVLL 119 (358)
T ss_dssp CTTTHHHHHHHH----HHTTCEEEEESSCCSSHHHHHHHHHHHHHHTCCE
T ss_pred CcHHHHHHHHHH----HHcCCeEEEecCCcCCHHHHHHHHHHHHHcCCeE
Confidence 997555444433 33455 455432 334577777777777777654
|
| >3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A | Back alignment and structure |
|---|
Probab=98.00 E-value=1.5e-05 Score=83.21 Aligned_cols=119 Identities=11% Similarity=0.116 Sum_probs=82.6
Q ss_pred CcEEEEcc----cHHHHHHHHHHHHC--CCeE-EEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecC
Q psy9637 5 GDIGLIGL----AVMGQNLILNMNDH--GFTV-VAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVK 77 (490)
Q Consensus 5 ~~IgiIGl----G~MG~~lA~~L~~~--G~~V-~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp 77 (490)
+||||||+ |.||..++..|.+. +++| .++|+++++.+.+.+.... ..+..+++++++++. +..|+|++|+|
T Consensus 21 irvgiIG~g~~gG~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~g~-~~~~~~~~~~~ll~~-~~vD~V~i~tp 98 (438)
T 3btv_A 21 IRVGFVGLNAAKGWAIKTHYPAILQLSSQFQITALYSPKIETSIATIQRLKL-SNATAFPTLESFASS-STIDMIVIAIQ 98 (438)
T ss_dssp EEEEEESCCTTSSSTTTTHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTC-TTCEEESSHHHHHHC-SSCSEEEECSC
T ss_pred CEEEEEcccCCCChHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHcCC-CcceeeCCHHHHhcC-CCCCEEEEeCC
Confidence 58999999 99999999999986 6776 5899999999888765321 112357899999874 24899999999
Q ss_pred CCchHHHHHHhhccc--C-CCCCEEEcC-CCCChHHHHHHHHHHHHcccccc
Q psy9637 78 AGSAVDDFIDKLVPL--L-EKGDIIIDG-GNSEYQDTDRRSKALEAKGLLYV 125 (490)
Q Consensus 78 ~~~~v~~vl~~l~~~--l-~~g~iiId~-s~~~~~~~~~~~~~l~~~gi~~l 125 (490)
+....+.++..+... . +.-.++++- -+....+..++.+.++++|+.+.
T Consensus 99 ~~~H~~~~~~al~aG~~~~~~khVl~EKP~a~~~~e~~~l~~~a~~~g~~~~ 150 (438)
T 3btv_A 99 VASHYEVVMPLLEFSKNNPNLKYLFVEWALACSLDQAESIYKAAAERGVQTI 150 (438)
T ss_dssp HHHHHHHHHHHHHHGGGCTTCCEEEEESSCCSSHHHHHHHHHHHHTTTCEEE
T ss_pred cHHHHHHHHHHHHCCCCcccceeEEecCcccCCHHHHHHHHHHHHHcCCeEE
Confidence 865544444333221 0 002477773 33456777777777777776543
|
| >2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A | Back alignment and structure |
|---|
Probab=98.00 E-value=2.1e-05 Score=83.11 Aligned_cols=114 Identities=18% Similarity=0.220 Sum_probs=82.2
Q ss_pred CcEEEEcc----cHHHHHHHHHHHHC--CCeEE-EEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecC
Q psy9637 5 GDIGLIGL----AVMGQNLILNMNDH--GFTVV-AYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVK 77 (490)
Q Consensus 5 ~~IgiIGl----G~MG~~lA~~L~~~--G~~V~-v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp 77 (490)
+||||||+ |.||..++..|.+. +++|+ ++|+++++.+.+.+.... ..+..+++++++++. +..|+|++|+|
T Consensus 40 irvgiIG~g~~GG~~g~~h~~~l~~~~~~~~lvav~d~~~~~a~~~a~~~g~-~~~~~~~d~~ell~~-~~vD~V~I~tp 117 (479)
T 2nvw_A 40 IRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQL-KHATGFDSLESFAQY-KDIDMIVVSVK 117 (479)
T ss_dssp EEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTTC-TTCEEESCHHHHHHC-TTCSEEEECSC
T ss_pred CEEEEEcccCCCCHHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHcCC-CcceeeCCHHHHhcC-CCCCEEEEcCC
Confidence 58999999 99999999999986 77764 899999999888765321 112358899999874 34899999999
Q ss_pred CCchHHHHHHhhcccCCCC-------CEEEcC-CCCChHHHHHHHHHHHHcc-ccc
Q psy9637 78 AGSAVDDFIDKLVPLLEKG-------DIIIDG-GNSEYQDTDRRSKALEAKG-LLY 124 (490)
Q Consensus 78 ~~~~v~~vl~~l~~~l~~g-------~iiId~-s~~~~~~~~~~~~~l~~~g-i~~ 124 (490)
+....+.++..+ ..| .++++- -+....+..++.+.++++| +.+
T Consensus 118 ~~~H~~~~~~al----~aG~~~~~~khVl~EKPla~~~~ea~~l~~~a~~~g~~~~ 169 (479)
T 2nvw_A 118 VPEHYEVVKNIL----EHSSQNLNLRYLYVEWALAASVQQAEELYSISQQRANLQT 169 (479)
T ss_dssp HHHHHHHHHHHH----HHSSSCSSCCEEEEESSSSSSHHHHHHHHHHHHTCTTCEE
T ss_pred cHHHHHHHHHHH----HCCCCcCCceeEEEeCCCcCCHHHHHHHHHHHHHcCCeEE
Confidence 865544444333 344 377775 3345677777777777777 543
|
| >1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=98.00 E-value=3.6e-05 Score=77.50 Aligned_cols=113 Identities=15% Similarity=0.157 Sum_probs=79.7
Q ss_pred CCcEEEEccc-HHHHHHHHHHHHC--CCeE-EEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCC
Q psy9637 4 KGDIGLIGLA-VMGQNLILNMNDH--GFTV-VAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAG 79 (490)
Q Consensus 4 ~~~IgiIGlG-~MG~~lA~~L~~~--G~~V-~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~ 79 (490)
+.||||||+| .||...+..|.+. +++| .++|+++++.+.+.+.... ...++|++++++. +..|+|++++|+.
T Consensus 18 ~irvgiIG~G~~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~~~---~~~~~~~~~ll~~-~~vD~V~i~tp~~ 93 (340)
T 1zh8_A 18 KIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGN---PAVFDSYEELLES-GLVDAVDLTLPVE 93 (340)
T ss_dssp CEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSS---CEEESCHHHHHHS-SCCSEEEECCCGG
T ss_pred ceeEEEEecCHHHHHHHHHHHHhCCCceEEEEEEcCCHHHHHHHHHHhCC---CcccCCHHHHhcC-CCCCEEEEeCCch
Confidence 4689999999 8999999999876 4665 5899999999888765321 1368999999874 3489999999996
Q ss_pred chHHHHHHhhcccCCCCC-EEEcCC-CCChHHHHHHHHHHHHccccc
Q psy9637 80 SAVDDFIDKLVPLLEKGD-IIIDGG-NSEYQDTDRRSKALEAKGLLY 124 (490)
Q Consensus 80 ~~v~~vl~~l~~~l~~g~-iiId~s-~~~~~~~~~~~~~l~~~gi~~ 124 (490)
...+-+.. . |+.|+ ++++-- +....+..++.+..+++|+.+
T Consensus 94 ~H~~~~~~-a---l~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~ 136 (340)
T 1zh8_A 94 LNLPFIEK-A---LRKGVHVICEKPISTDVETGKKVVELSEKSEKTV 136 (340)
T ss_dssp GHHHHHHH-H---HHTTCEEEEESSSSSSHHHHHHHHHHHHHCSSCE
T ss_pred HHHHHHHH-H---HHCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCeE
Confidence 54443333 2 33454 555531 224566677777777777644
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=97.99 E-value=1.9e-05 Score=78.98 Aligned_cols=102 Identities=12% Similarity=0.108 Sum_probs=64.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCC--eEEEEeCChHHHHHHHHcccCC----CCeeccCCHHHHHhhCCCCcEEEEecC
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGF--TVVAYNRTTAKVDSFLANEAKG----TNIIGAHSLEELVKNLKKPRRVMMLVK 77 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~g~~~----~~i~~~~s~~e~v~~l~~~dvIil~vp 77 (490)
++||+|||+|.+|.+++..|+.+|+ +|+++|+++++++.....-... .++....+.. +.++.+|+||++++
T Consensus 7 ~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~---~a~~~aDvVii~~g 83 (318)
T 1y6j_A 7 RSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDY---SDVKDCDVIVVTAG 83 (318)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CG---GGGTTCSEEEECCC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHhHHhcCCeEEEECCH---HHhCCCCEEEEcCC
Confidence 4799999999999999999999998 9999999987655322211110 1222222222 23455999999997
Q ss_pred CCch---------------HHHHHHhhcccCCCCCEEEcCCCCChHHHH
Q psy9637 78 AGSA---------------VDDFIDKLVPLLEKGDIIIDGGNSEYQDTD 111 (490)
Q Consensus 78 ~~~~---------------v~~vl~~l~~~l~~g~iiId~s~~~~~~~~ 111 (490)
.+.. ++++++.+.++ .++.+||..+| |.++.
T Consensus 84 ~p~k~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~viv~tN--Pv~~~ 129 (318)
T 1y6j_A 84 ANRKPGETRLDLAKKNVMIAKEVTQNIMKY-YNHGVILVVSN--PVDII 129 (318)
T ss_dssp C------CHHHHHHHHHHHHHHHHHHHHHH-CCSCEEEECSS--SHHHH
T ss_pred CCCCCCcCHHHHHHhhHHHHHHHHHHHHHh-CCCcEEEEecC--cHHHH
Confidence 6531 34555666666 57788888765 44443
|
| >1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=97.98 E-value=2.2e-05 Score=78.52 Aligned_cols=100 Identities=13% Similarity=0.116 Sum_probs=65.7
Q ss_pred CCCCCcEEEEcccHHHHHHHHHHHHCCC--eEEEEeCChHHHHHHHHc---cc-CCCCeeccCCHHHHHhhCCCCcEEEE
Q psy9637 1 MAAKGDIGLIGLAVMGQNLILNMNDHGF--TVVAYNRTTAKVDSFLAN---EA-KGTNIIGAHSLEELVKNLKKPRRVMM 74 (490)
Q Consensus 1 M~~~~~IgiIGlG~MG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~---g~-~~~~i~~~~s~~e~v~~l~~~dvIil 74 (490)
|+.++||+|||+|.+|.+++..|+.+++ +|.++|+++++++..... .. ...++....+..+. ++.+|+||+
T Consensus 2 ~~~~~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~v~~~~~~a---~~~aDvVii 78 (318)
T 1ez4_A 2 MPNHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEYSD---CKDADLVVI 78 (318)
T ss_dssp BTTBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCGGG---GTTCSEEEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCeEEEECCHHH---hCCCCEEEE
Confidence 5556899999999999999999998887 899999998887753221 11 00112122222333 444999999
Q ss_pred ecCCCc---------------hHHHHHHhhcccCCCCCEEEcCCC
Q psy9637 75 LVKAGS---------------AVDDFIDKLVPLLEKGDIIIDGGN 104 (490)
Q Consensus 75 ~vp~~~---------------~v~~vl~~l~~~l~~g~iiId~s~ 104 (490)
+.+.+. .++++.+.+..+ .|+.+||..+|
T Consensus 79 ~ag~~~~~g~~R~dl~~~n~~i~~~i~~~i~~~-~p~a~iiv~tN 122 (318)
T 1ez4_A 79 TAGAPQKPGESRLDLVNKNLNILSSIVKPVVDS-GFDGIFLVAAN 122 (318)
T ss_dssp CCCC----------CHHHHHHHHHHHHHHHHHT-TCCSEEEECSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEeCC
Confidence 986542 233344555555 57778887876
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=97.98 E-value=7.2e-06 Score=84.00 Aligned_cols=96 Identities=24% Similarity=0.255 Sum_probs=68.1
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHc-ccCCCCee--ccCCHHHHHhhCCCCcEEEEecCCCch
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLAN-EAKGTNII--GAHSLEELVKNLKKPRRVMMLVKAGSA 81 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~-g~~~~~i~--~~~s~~e~v~~l~~~dvIil~vp~~~~ 81 (490)
.+|+|||+|.+|..+++.+...|.+|+++|+++++.+.+.+. +.. .... ...++.+++.. +|+||.+++.+..
T Consensus 169 ~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~~~l~~~~~~~g~~-~~~~~~~~~~l~~~l~~---aDvVi~~~~~p~~ 244 (377)
T 2vhw_A 169 ADVVVIGAGTAGYNAARIANGMGATVTVLDINIDKLRQLDAEFCGR-IHTRYSSAYELEGAVKR---ADLVIGAVLVPGA 244 (377)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTS-SEEEECCHHHHHHHHHH---CSEEEECCCCTTS
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhcCCe-eEeccCCHHHHHHHHcC---CCEEEECCCcCCC
Confidence 589999999999999999999999999999999988877653 321 0000 02234555555 8999998854321
Q ss_pred -HHHH-HHhhcccCCCCCEEEcCCC
Q psy9637 82 -VDDF-IDKLVPLLEKGDIIIDGGN 104 (490)
Q Consensus 82 -v~~v-l~~l~~~l~~g~iiId~s~ 104 (490)
+..+ .++.++.+++|.+|||.+.
T Consensus 245 ~t~~li~~~~l~~mk~g~~iV~va~ 269 (377)
T 2vhw_A 245 KAPKLVSNSLVAHMKPGAVLVDIAI 269 (377)
T ss_dssp CCCCCBCHHHHTTSCTTCEEEEGGG
T ss_pred CCcceecHHHHhcCCCCcEEEEEec
Confidence 1111 2445566788999999983
|
| >3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=97.98 E-value=3.2e-05 Score=77.19 Aligned_cols=101 Identities=14% Similarity=0.175 Sum_probs=67.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCC-eEEEEeCC--hHHHHHHHH----cc---cCCCCeeccCCHHHHHhhCCCCcEEE
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGF-TVVAYNRT--TAKVDSFLA----NE---AKGTNIIGAHSLEELVKNLKKPRRVM 73 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~--~~~~~~l~~----~g---~~~~~i~~~~s~~e~v~~l~~~dvIi 73 (490)
.+||+|||+|.||.++|..|+.+|+ +|+++|++ +++.+.... .. ....++..+++.++ ++++|+||
T Consensus 8 ~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i~~t~d~~a----~~~aDvVI 83 (315)
T 3tl2_A 8 RKKVSVIGAGFTGATTAFLLAQKELADVVLVDIPQLENPTKGKALDMLEASPVQGFDANIIGTSDYAD----TADSDVVV 83 (315)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCCEEEESCGGG----GTTCSEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeccchHHHHHHhhhhHHHhhhhccCCCEEEEcCCHHH----hCCCCEEE
Confidence 3689999999999999999999999 99999999 454443211 10 01234554555443 33499999
Q ss_pred EecCCCc---------------hHHHHHHhhcccCCCCCEEEcCCCCChHHHH
Q psy9637 74 MLVKAGS---------------AVDDFIDKLVPLLEKGDIIIDGGNSEYQDTD 111 (490)
Q Consensus 74 l~vp~~~---------------~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~ 111 (490)
++...+. .++++.+.+..+ .|+.+++..|| |-++.
T Consensus 84 iaag~p~kpg~~R~dl~~~N~~i~~~i~~~i~~~-~p~a~vlvvsN--Pvd~~ 133 (315)
T 3tl2_A 84 ITAGIARKPGMSRDDLVATNSKIMKSITRDIAKH-SPNAIIVVLTN--PVDAM 133 (315)
T ss_dssp ECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEECCS--SHHHH
T ss_pred EeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEECCC--hHHHH
Confidence 9984432 123444555554 47788888887 44443
|
| >1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=97.97 E-value=3e-05 Score=75.63 Aligned_cols=112 Identities=21% Similarity=0.154 Sum_probs=75.8
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
+++.|+|.|.||.+++..|++.|++|+++||++++.+.+.+.......+. ..+++++.+ ..+|+||.++|.+.. ..
T Consensus 120 k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~~~~~~~la~~~~~~~~~~-~~~~~~~~~--~~~DivVn~t~~~~~-~~ 195 (271)
T 1nyt_A 120 LRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQ-ALSMDELEG--HEFDLIINATSSGIS-GD 195 (271)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGSSEE-ECCSGGGTT--CCCSEEEECCSCGGG-TC
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHhhccCCee-EecHHHhcc--CCCCEEEECCCCCCC-CC
Confidence 57999999999999999999999999999999999888775421100121 223333321 358999999998643 11
Q ss_pred HHHhhc-ccCCCCCEEEcCCCCChHHHHHHHHHHHHcccc
Q psy9637 85 FIDKLV-PLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLL 123 (490)
Q Consensus 85 vl~~l~-~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~ 123 (490)
+ ..+. ..+.++.+++|.... |..+. ..+..+++|..
T Consensus 196 ~-~~i~~~~l~~~~~v~D~~y~-p~~t~-~~~~a~~~G~~ 232 (271)
T 1nyt_A 196 I-PAIPSSLIHPGIYCYDMFYQ-KGKTP-FLAWCEQRGSK 232 (271)
T ss_dssp C-CCCCGGGCCTTCEEEESCCC-SSCCH-HHHHHHHTTCC
T ss_pred C-CCCCHHHcCCCCEEEEeccC-CcCCH-HHHHHHHcCCC
Confidence 1 0111 235788999999875 44443 34556667764
|
| >3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* | Back alignment and structure |
|---|
Probab=97.97 E-value=2.3e-05 Score=78.60 Aligned_cols=105 Identities=15% Similarity=0.163 Sum_probs=67.9
Q ss_pred CC-CCCcEEEEcccHHHHHHHHHHHHCCC--eEEEEeCChHHHHH----HHHcccC-CCCeeccCCHHHHHhhCCCCcEE
Q psy9637 1 MA-AKGDIGLIGLAVMGQNLILNMNDHGF--TVVAYNRTTAKVDS----FLANEAK-GTNIIGAHSLEELVKNLKKPRRV 72 (490)
Q Consensus 1 M~-~~~~IgiIGlG~MG~~lA~~L~~~G~--~V~v~dr~~~~~~~----l~~~g~~-~~~i~~~~s~~e~v~~l~~~dvI 72 (490)
|+ ..+||+|||+|.||.++|..|+..|+ +|+++|+++++++. +...... ..++...++..+. ++.+|+|
T Consensus 1 m~~~~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~~~v~i~~~~~~a---~~~aDvV 77 (326)
T 3pqe_A 1 MNKHVNKVALIGAGFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSYGTYED---CKDADIV 77 (326)
T ss_dssp -CCSCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGGGSSSCCEEEEECGGG---GTTCSEE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhccccccCCeEEEeCcHHH---hCCCCEE
Confidence 53 45799999999999999999999997 89999999988775 3332110 0122222222233 3449999
Q ss_pred EEecCCCc---------------hHHHHHHhhcccCCCCCEEEcCCCCChHHHH
Q psy9637 73 MMLVKAGS---------------AVDDFIDKLVPLLEKGDIIIDGGNSEYQDTD 111 (490)
Q Consensus 73 il~vp~~~---------------~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~ 111 (490)
|++...+. .++++.+.+..+ .|+.+|+..|| |-++.
T Consensus 78 vi~ag~p~kpG~~R~dL~~~N~~Iv~~i~~~I~~~-~p~a~vlvvtN--Pvd~~ 128 (326)
T 3pqe_A 78 CICAGANQKPGETRLELVEKNLKIFKGIVSEVMAS-GFDGIFLVATN--PVDIL 128 (326)
T ss_dssp EECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHT-TCCSEEEECSS--SHHHH
T ss_pred EEecccCCCCCccHHHHHHHHHHHHHHHHHHHHHh-cCCeEEEEcCC--hHHHH
Confidence 99985432 123333445444 46788888887 44443
|
| >1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A* | Back alignment and structure |
|---|
Probab=97.97 E-value=8.4e-06 Score=84.19 Aligned_cols=93 Identities=17% Similarity=0.255 Sum_probs=66.3
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccC-------------------------CH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAH-------------------------SL 59 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~-------------------------s~ 59 (490)
.+|+|||+|.+|..+++.+...|.+|+++|+++++.+.+.+.+.. ....+ ++
T Consensus 173 ~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~~~~~~~~~lGa~---~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l 249 (401)
T 1x13_A 173 AKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAE---FLELDFKEEAGSGDGYAKVMSDAFIKAEMELF 249 (401)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCGGGHHHHHHTTCE---ECCC--------CCHHHHHHSHHHHHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCE---EEEecccccccccccchhhccHHHHHHHHHHH
Confidence 589999999999999999999999999999999988877655432 11000 24
Q ss_pred HHHHhhCCCCcEEEEe--cCCCchHHHHH-HhhcccCCCCCEEEcCCC
Q psy9637 60 EELVKNLKKPRRVMML--VKAGSAVDDFI-DKLVPLLEKGDIIIDGGN 104 (490)
Q Consensus 60 ~e~v~~l~~~dvIil~--vp~~~~v~~vl-~~l~~~l~~g~iiId~s~ 104 (490)
.+++.. +|+||.+ +|... ...++ ++.+..+++|.+|||.++
T Consensus 250 ~e~~~~---aDvVI~~~~~pg~~-ap~li~~~~l~~mk~g~vIVdva~ 293 (401)
T 1x13_A 250 AAQAKE---VDIIVTTALIPGKP-APKLITREMVDSMKAGSVIVDLAA 293 (401)
T ss_dssp HHHHHH---CSEEEECCCCTTSC-CCCCBCHHHHHTSCTTCEEEETTG
T ss_pred HHHhCC---CCEEEECCccCCCC-CCeeeCHHHHhcCCCCcEEEEEcC
Confidence 455555 8999999 54211 11111 334455778999999985
|
| >3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.96 E-value=4.4e-05 Score=79.10 Aligned_cols=115 Identities=16% Similarity=0.163 Sum_probs=79.7
Q ss_pred CcEEEEcccH---HHHHHHHHHHHCC-CeEE--EEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhC----CCCcEEEE
Q psy9637 5 GDIGLIGLAV---MGQNLILNMNDHG-FTVV--AYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNL----KKPRRVMM 74 (490)
Q Consensus 5 ~~IgiIGlG~---MG~~lA~~L~~~G-~~V~--v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l----~~~dvIil 74 (490)
+||||||+|. ||...+..+...+ ++|+ ++|+++++.+.+.+.... .....+++++++++.- +..|+|++
T Consensus 38 ~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~g~-~~~~~~~~~~~ll~~~~~~~~~vD~V~I 116 (417)
T 3v5n_A 38 IRLGMVGGGSGAFIGAVHRIAARLDDHYELVAGALSSTPEKAEASGRELGL-DPSRVYSDFKEMAIREAKLKNGIEAVAI 116 (417)
T ss_dssp EEEEEESCC--CHHHHHHHHHHHHTSCEEEEEEECCSSHHHHHHHHHHHTC-CGGGBCSCHHHHHHHHHHCTTCCSEEEE
T ss_pred ceEEEEcCCCchHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHcCC-CcccccCCHHHHHhcccccCCCCcEEEE
Confidence 4899999999 9999988888776 6765 679999999988765321 0113578999998751 34899999
Q ss_pred ecCCCchHHHHHHhhcccCCCCC-EEEcCC-CCChHHHHHHHHHHHHccccc
Q psy9637 75 LVKAGSAVDDFIDKLVPLLEKGD-IIIDGG-NSEYQDTDRRSKALEAKGLLY 124 (490)
Q Consensus 75 ~vp~~~~v~~vl~~l~~~l~~g~-iiId~s-~~~~~~~~~~~~~l~~~gi~~ 124 (490)
|+|+....+-+... ++.|+ ++++-- .....+..++.+.++++|+.+
T Consensus 117 ~tp~~~H~~~~~~a----l~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~ 164 (417)
T 3v5n_A 117 VTPNHVHYAAAKEF----LKRGIHVICDKPLTSTLADAKKLKKAADESDALF 164 (417)
T ss_dssp CSCTTSHHHHHHHH----HTTTCEEEEESSSCSSHHHHHHHHHHHHHCSSCE
T ss_pred CCCcHHHHHHHHHH----HhCCCeEEEECCCcCCHHHHHHHHHHHHHcCCEE
Confidence 99997554444332 34565 455532 234567777777777777654
|
| >1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* | Back alignment and structure |
|---|
Probab=97.95 E-value=1.9e-05 Score=78.95 Aligned_cols=102 Identities=11% Similarity=0.130 Sum_probs=65.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCC--eEEEEeCChHHHHHHHHc---ccC--CCCeeccCCHHHHHhhCCCCcEEEEec
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGF--TVVAYNRTTAKVDSFLAN---EAK--GTNIIGAHSLEELVKNLKKPRRVMMLV 76 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~---g~~--~~~i~~~~s~~e~v~~l~~~dvIil~v 76 (490)
++||+|||+|.||.++|..|+.+|. +|+++|+++++.+..... ... ..++....+..+ .++.+|+||++.
T Consensus 6 ~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~dl~~~~~~~~~~~~i~~~~~~---al~~aDvViia~ 82 (316)
T 1ldn_A 6 GARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYD---DCRDADLVVICA 82 (316)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGG---GTTTCSEEEECC
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhHHHHhhhcCCCeEEEcCcHH---HhCCCCEEEEcC
Confidence 4699999999999999999998875 899999998766543211 110 001112222233 344599999998
Q ss_pred CCCc---------------hHHHHHHhhcccCCCCCEEEcCCCCChHHHH
Q psy9637 77 KAGS---------------AVDDFIDKLVPLLEKGDIIIDGGNSEYQDTD 111 (490)
Q Consensus 77 p~~~---------------~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~ 111 (490)
+.+. ...++++.+.++. |+.+++..|| |-+..
T Consensus 83 ~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~~iv~tN--Pv~~~ 129 (316)
T 1ldn_A 83 GANQKPGETRLDLVDKNIAIFRSIVESVMASG-FQGLFLVATN--PVDIL 129 (316)
T ss_dssp SCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHT-CCSEEEECSS--SHHHH
T ss_pred CCCCCCCCCHHHHHHcChHHHHHHHHHHHHHC-CCCEEEEeCC--chHHH
Confidence 7653 2334445555554 6677777777 44443
|
| >1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A | Back alignment and structure |
|---|
Probab=97.94 E-value=3.6e-05 Score=80.62 Aligned_cols=120 Identities=15% Similarity=0.167 Sum_probs=78.1
Q ss_pred CCCCCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCee-ccCCHHHHHhhCCCCcEEEEecCCC
Q psy9637 1 MAAKGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNII-GAHSLEELVKNLKKPRRVMMLVKAG 79 (490)
Q Consensus 1 M~~~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~-~~~s~~e~v~~l~~~dvIil~vp~~ 79 (490)
|+ +++|.|+|.|.||..++..|++.|++|+++||++++.+.+.+.......+. -..+.+++.+.++.+|+|+.++|..
T Consensus 1 M~-~k~VlViGaG~iG~~ia~~L~~~G~~V~v~~R~~~~a~~la~~~~~~~~~~~Dv~d~~~l~~~l~~~DvVIn~a~~~ 79 (450)
T 1ff9_A 1 MA-TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIPYT 79 (450)
T ss_dssp -C-CCEEEEECCSTTHHHHHHHHHTTTCEEEEEESSHHHHHHTTTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECCC--
T ss_pred CC-CCEEEEECCCHHHHHHHHHHHhCcCEEEEEECCHHHHHHHHHhcCCceEEEeecCCHHHHHHHHcCCcEEEECCccc
Confidence 64 468999999999999999999999999999999998877654311000000 1234444433344599999999875
Q ss_pred chHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccc
Q psy9637 80 SAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVG 126 (490)
Q Consensus 80 ~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld 126 (490)
... .+... .+.+|..++|.+... .......+.+++.|+.+++
T Consensus 80 ~~~-~i~~a---~l~~g~~vvd~~~~~-~~~~~l~~aA~~aGv~~i~ 121 (450)
T 1ff9_A 80 FHA-TVIKS---AIRQKKHVVTTSYVS-PAMMELDQAAKDAGITVMN 121 (450)
T ss_dssp CHH-HHHHH---HHHHTCEEEESSCCC-HHHHHTHHHHHHTTCEEEC
T ss_pred cch-HHHHH---HHhCCCeEEEeeccc-HHHHHHHHHHHHCCCeEEe
Confidence 332 23222 234577888886544 3455666777788876553
|
| >3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 | Back alignment and structure |
|---|
Probab=97.92 E-value=1.9e-05 Score=79.10 Aligned_cols=97 Identities=10% Similarity=0.078 Sum_probs=69.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCC--eEEEEeCChHHHHHHHH---cc-c--CCCCeeccCCHHHHHhhCCCCcEEEEe
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGF--TVVAYNRTTAKVDSFLA---NE-A--KGTNIIGAHSLEELVKNLKKPRRVMML 75 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~---~g-~--~~~~i~~~~s~~e~v~~l~~~dvIil~ 75 (490)
.+||+|||+|.||.++|..|+.+|+ +|.++|+++++++.... .. . ...++..+.++++ ++++|+||++
T Consensus 21 ~~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~t~d~~~----~~daDiVIit 96 (330)
T 3ldh_A 21 YNKITVVGCDAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLFLHTAKIVSGKDYSV----SAGSKLVVIT 96 (330)
T ss_dssp CCEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHGGGSCCSEEEEESSSCS----CSSCSEEEEC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhhhcccCCeEEEcCCHHH----hCCCCEEEEe
Confidence 4799999999999999999999997 99999999987765321 11 1 1224455666655 3449999998
Q ss_pred cCCCc---------------hHHHHHHhhcccCCCCCEEEcCCCC
Q psy9637 76 VKAGS---------------AVDDFIDKLVPLLEKGDIIIDGGNS 105 (490)
Q Consensus 76 vp~~~---------------~v~~vl~~l~~~l~~g~iiId~s~~ 105 (490)
...+. .++++++.+.++ .|+.+++..||-
T Consensus 97 aG~p~kpG~tR~dll~~N~~I~k~i~~~I~k~-~P~a~ilvvtNP 140 (330)
T 3ldh_A 97 AGARQQEGESRLNLVQRNVNIFKFIIPNIVKH-SPDCLKELHPEL 140 (330)
T ss_dssp CSCCCCSSCCTTGGGHHHHHHHHHHHHHHHHH-CTTCEEEECSSS
T ss_pred CCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhh-CCCceEEeCCCc
Confidence 65432 244555666666 688889989873
|
| >3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=97.92 E-value=3.6e-05 Score=80.30 Aligned_cols=72 Identities=15% Similarity=0.167 Sum_probs=56.5
Q ss_pred CCcEEEEcccHH--HHHHHHHHHH----CCCeEEEEeCChHHHHHHHHccc----CCCCeeccCCHHHHHhhCCCCcEEE
Q psy9637 4 KGDIGLIGLAVM--GQNLILNMND----HGFTVVAYNRTTAKVDSFLANEA----KGTNIIGAHSLEELVKNLKKPRRVM 73 (490)
Q Consensus 4 ~~~IgiIGlG~M--G~~lA~~L~~----~G~~V~v~dr~~~~~~~l~~~g~----~~~~i~~~~s~~e~v~~l~~~dvIi 73 (490)
++||+|||.|.| |..++..|+. +| +|++||+++++++....... ...+++.+++++++++. +|+||
T Consensus 5 ~~KIaVIGaGs~g~g~~la~~l~~~~~~~g-eV~L~Di~~e~le~~~~~~~~l~~~~~~I~~TtD~~eAl~d---ADfVI 80 (450)
T 3fef_A 5 QIKIAYIGGGSQGWARSLMSDLSIDERMSG-TVALYDLDFEAAQKNEVIGNHSGNGRWRYEAVSTLKKALSA---ADIVI 80 (450)
T ss_dssp CEEEEEETTTCSSHHHHHHHHHHHCSSCCE-EEEEECSSHHHHHHHHHHHTTSTTSCEEEEEESSHHHHHTT---CSEEE
T ss_pred CCEEEEECCChhHhHHHHHHHHHhccccCC-eEEEEeCCHHHHHHHHHHHHHHhccCCeEEEECCHHHHhcC---CCEEE
Confidence 369999999997 5789988886 67 99999999988766543221 12356778899998887 99999
Q ss_pred EecCCC
Q psy9637 74 MLVKAG 79 (490)
Q Consensus 74 l~vp~~ 79 (490)
++++.+
T Consensus 81 ~airvG 86 (450)
T 3fef_A 81 ISILPG 86 (450)
T ss_dssp ECCCSS
T ss_pred eccccC
Confidence 999754
|
| >1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=97.91 E-value=5.2e-06 Score=81.20 Aligned_cols=112 Identities=13% Similarity=0.140 Sum_probs=77.7
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGF-TVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
+++.|||+|.||..++..|.+.|. +|+++||++++.+.+.+.... ....++. +..+|+||.++|.+....
T Consensus 120 ~~vlvlGaGgaarav~~~L~~~G~~~i~v~nRt~~ka~~la~~~~~----~~~~~~~-----~~~~DivInaTp~gm~~~ 190 (271)
T 1npy_A 120 AKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGY----AYINSLE-----NQQADILVNVTSIGMKGG 190 (271)
T ss_dssp SCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTC----EEESCCT-----TCCCSEEEECSSTTCTTS
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCC----ccchhhh-----cccCCEEEECCCCCccCc
Confidence 579999999999999999999997 799999999999888764211 1111221 234899999999874211
Q ss_pred ---HHHHhhc-ccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccC
Q psy9637 84 ---DFIDKLV-PLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCG 128 (490)
Q Consensus 84 ---~vl~~l~-~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~ 128 (490)
+.. .+. ..+.++.+++|... .|..| ...+..+++|..++|..
T Consensus 191 ~~~~~~-~~~~~~l~~~~~v~DlvY-~P~~T-~ll~~A~~~G~~~i~Gl 236 (271)
T 1npy_A 191 KEEMDL-AFPKAFIDNASVAFDVVA-MPVET-PFIRYAQARGKQTISGA 236 (271)
T ss_dssp TTTTSC-SSCHHHHHHCSEEEECCC-SSSSC-HHHHHHHHTTCEEECHH
T ss_pred cccCCC-CCCHHHcCCCCEEEEeec-CCCCC-HHHHHHHHCCCEEECCH
Confidence 110 010 13456889999986 44555 55667778887766553
|
| >2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.90 E-value=3.5e-05 Score=81.09 Aligned_cols=117 Identities=13% Similarity=0.143 Sum_probs=79.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHHC-CCeEEEEeCChHHHHHHHHcccCCCCe-e-ccCCHHHHHhhCCCCcEEEEecCCCc
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDH-GFTVVAYNRTTAKVDSFLANEAKGTNI-I-GAHSLEELVKNLKKPRRVMMLVKAGS 80 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~-G~~V~v~dr~~~~~~~l~~~g~~~~~i-~-~~~s~~e~v~~l~~~dvIil~vp~~~ 80 (490)
+++|.|+|+|.+|..++..|++. |++|+++||++++++.+.+.. +... . -..+.+++.+.++.+|+||.|+|...
T Consensus 23 ~k~VlIiGAGgiG~aia~~L~~~~g~~V~v~~R~~~ka~~la~~~--~~~~~~~D~~d~~~l~~~l~~~DvVIn~tp~~~ 100 (467)
T 2axq_A 23 GKNVLLLGSGFVAQPVIDTLAANDDINVTVACRTLANAQALAKPS--GSKAISLDVTDDSALDKVLADNDVVISLIPYTF 100 (467)
T ss_dssp CEEEEEECCSTTHHHHHHHHHTSTTEEEEEEESSHHHHHHHHGGG--TCEEEECCTTCHHHHHHHHHTSSEEEECSCGGG
T ss_pred CCEEEEECChHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhc--CCcEEEEecCCHHHHHHHHcCCCEEEECCchhh
Confidence 35799999999999999999998 799999999999998887541 1111 1 12334443333334899999999753
Q ss_pred hHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccccccc
Q psy9637 81 AVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGC 127 (490)
Q Consensus 81 ~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~ 127 (490)
...+... .+.++..++|.+... .......+.+++.|+.+++.
T Consensus 101 -~~~v~~a---~l~~g~~vvd~~~~~-p~~~~Ll~~Ak~aGv~~i~g 142 (467)
T 2axq_A 101 -HPNVVKS---AIRTKTDVVTSSYIS-PALRELEPEIVKAGITVMNE 142 (467)
T ss_dssp -HHHHHHH---HHHHTCEEEECSCCC-HHHHHHHHHHHHHTCEEECS
T ss_pred -hHHHHHH---HHhcCCEEEEeecCC-HHHHHHHHHHHHcCCEEEec
Confidence 2233332 244678899986534 34555667777778765543
|
| >1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=97.90 E-value=3.1e-05 Score=81.36 Aligned_cols=98 Identities=16% Similarity=0.213 Sum_probs=70.9
Q ss_pred CcEEEEcccHH-HHHHHHHHHHC-----CCeEEEEeCChHHHHHHHHc-------ccCCCCeeccCCHHHHHhhCCCCcE
Q psy9637 5 GDIGLIGLAVM-GQNLILNMNDH-----GFTVVAYNRTTAKVDSFLAN-------EAKGTNIIGAHSLEELVKNLKKPRR 71 (490)
Q Consensus 5 ~~IgiIGlG~M-G~~lA~~L~~~-----G~~V~v~dr~~~~~~~l~~~-------g~~~~~i~~~~s~~e~v~~l~~~dv 71 (490)
+||+|||.|.+ +.++|..|+++ +++|++||+++++++..... .....++..++++.+.++. +|+
T Consensus 29 ~KIaVIGaGsv~~~ala~~L~~~~~~l~~~eV~L~Di~~e~~~~~~~~~~~~l~~~~~~~~I~~t~D~~eal~~---AD~ 105 (472)
T 1u8x_X 29 FSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTD---VDF 105 (472)
T ss_dssp EEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSS---CSE
T ss_pred CEEEEECCCHHHHHHHHHHHHhCCCCCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCCCCEEEEECCHHHHHcC---CCE
Confidence 48999999998 66688888887 67999999999887653321 1113456667788777776 999
Q ss_pred EEEecCCCc-----------------------------------hHHHHHHhhcccCCCCCEEEcCCCCC
Q psy9637 72 VMMLVKAGS-----------------------------------AVDDFIDKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 72 Iil~vp~~~-----------------------------------~v~~vl~~l~~~l~~g~iiId~s~~~ 106 (490)
||+++|.+. .+.++++.+.++ .|+.++|..||-.
T Consensus 106 VViaag~~~~~g~~rd~~ip~k~g~~~~eT~G~ggl~~~~rni~i~~~i~~~i~~~-~P~A~ii~~TNPv 174 (472)
T 1u8x_X 106 VMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKY-SPDAWMLNYSNPA 174 (472)
T ss_dssp EEECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEECCSCH
T ss_pred EEEcCCCccccccchhhhhhhhcCcccccccCchhHHHHhhhHHHHHHHHHHHHHH-CCCeEEEEeCCcH
Confidence 999998842 133444555544 5889999998843
|
| >4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=97.90 E-value=6.4e-05 Score=76.40 Aligned_cols=112 Identities=19% Similarity=0.181 Sum_probs=75.8
Q ss_pred CcEEEEcccHHHHHHHHHHHH--------CCCeEE-EEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEe
Q psy9637 5 GDIGLIGLAVMGQNLILNMND--------HGFTVV-AYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMML 75 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~--------~G~~V~-v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~ 75 (490)
-||||||+|.||...+..+.+ .+.+|+ ++|+++++++++.++... ...++|+++++++ ++.|+|++|
T Consensus 26 irvgiIG~G~ig~~H~~a~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~---~~~y~d~~ell~~-~~iDaV~Ia 101 (393)
T 4fb5_A 26 LGIGLIGTGYMGKCHALAWNAVKTVFGDVERPRLVHLAEANAGLAEARAGEFGF---EKATADWRALIAD-PEVDVVSVT 101 (393)
T ss_dssp CEEEEECCSHHHHHHHHHHTTHHHHHCSSCCCEEEEEECC--TTHHHHHHHHTC---SEEESCHHHHHHC-TTCCEEEEC
T ss_pred ccEEEEcCCHHHHHHHHHHHhhhhhhccCCCcEEEEEECCCHHHHHHHHHHhCC---CeecCCHHHHhcC-CCCcEEEEC
Confidence 379999999999988776643 245554 789999999988875431 1358899999975 357999999
Q ss_pred cCCCchHHHHHHhhcccCCCCC-EEEcCC-CCChHHHHHHHHHHHHccccc
Q psy9637 76 VKAGSAVDDFIDKLVPLLEKGD-IIIDGG-NSEYQDTDRRSKALEAKGLLY 124 (490)
Q Consensus 76 vp~~~~v~~vl~~l~~~l~~g~-iiId~s-~~~~~~~~~~~~~l~~~gi~~ 124 (490)
+|+....+-++..+ +.|+ ++++-= +....+..++.+..+++|+.+
T Consensus 102 tP~~~H~~~a~~al----~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~l 148 (393)
T 4fb5_A 102 TPNQFHAEMAIAAL----EAGKHVWCEKPMAPAYADAERMLATAERSGKVA 148 (393)
T ss_dssp SCGGGHHHHHHHHH----HTTCEEEECSCSCSSHHHHHHHHHHHHHSSSCE
T ss_pred CChHHHHHHHHHHH----hcCCeEEEccCCcccHHHHHHhhhhHHhcCCcc
Confidence 99976655554433 3454 455521 223467777777777777643
|
| >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* | Back alignment and structure |
|---|
Probab=97.89 E-value=3.8e-05 Score=76.73 Aligned_cols=102 Identities=14% Similarity=0.141 Sum_probs=66.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCC--eEEEEeCChHHHHHHHH---cccC--CCCeeccCCHHHHHhhCCCCcEEEEec
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGF--TVVAYNRTTAKVDSFLA---NEAK--GTNIIGAHSLEELVKNLKKPRRVMMLV 76 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~---~g~~--~~~i~~~~s~~e~v~~l~~~dvIil~v 76 (490)
++||+|||+|.+|.+++..|+.+|+ +|.++|+++++++.... .... +.++....+..+. ++.+|+||+++
T Consensus 6 ~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~~~~~a---~~~aDvVvi~a 82 (317)
T 3d0o_A 6 GNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKAGEYSD---CHDADLVVICA 82 (317)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHGGGSSSCCEEEECCGGG---GTTCSEEEECC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhhhhcCCCeEEEeCCHHH---hCCCCEEEECC
Confidence 3699999999999999999998884 89999999877664211 1110 0112122233333 44499999999
Q ss_pred CCCc---------------hHHHHHHhhcccCCCCCEEEcCCCCChHHHH
Q psy9637 77 KAGS---------------AVDDFIDKLVPLLEKGDIIIDGGNSEYQDTD 111 (490)
Q Consensus 77 p~~~---------------~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~ 111 (490)
+.+. .++++.+.+.++ .|+.+||..|| |.++.
T Consensus 83 g~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~viv~tN--Pv~~~ 129 (317)
T 3d0o_A 83 GAAQKPGETRLDLVSKNLKIFKSIVGEVMAS-KFDGIFLVATN--PVDIL 129 (317)
T ss_dssp CCCCCTTCCHHHHHHHHHHHHHHHHHHHHHT-TCCSEEEECSS--SHHHH
T ss_pred CCCCCCCCcHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEecC--cHHHH
Confidence 6652 233444555555 57888888775 44443
|
| >3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=97.89 E-value=1.7e-05 Score=77.45 Aligned_cols=111 Identities=15% Similarity=0.076 Sum_probs=76.4
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGF-TVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
+++.|+|.|.+|.+++..|++.|. +|+++||++++.+++.+.... .++. ..+++++.. ..+|+||.++|.+...+
T Consensus 121 k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~-~~~~-~~~~~~l~~--~~~DivInaTp~gm~~~ 196 (272)
T 3pwz_A 121 RRVLLLGAGGAVRGALLPFLQAGPSELVIANRDMAKALALRNELDH-SRLR-ISRYEALEG--QSFDIVVNATSASLTAD 196 (272)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHCC-TTEE-EECSGGGTT--CCCSEEEECSSGGGGTC
T ss_pred CEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhcc-CCee-EeeHHHhcc--cCCCEEEECCCCCCCCC
Confidence 579999999999999999999996 999999999999988765321 1121 223344321 34899999999863211
Q ss_pred H-HHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccc
Q psy9637 84 D-FIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLL 123 (490)
Q Consensus 84 ~-vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~ 123 (490)
. .+. ...++++.+|+|.... |..|. ..+..+++|+.
T Consensus 197 ~~~i~--~~~l~~~~~V~DlvY~-P~~T~-ll~~A~~~G~~ 233 (272)
T 3pwz_A 197 LPPLP--ADVLGEAALAYELAYG-KGLTP-FLRLAREQGQA 233 (272)
T ss_dssp CCCCC--GGGGTTCSEEEESSCS-CCSCH-HHHHHHHHSCC
T ss_pred CCCCC--HHHhCcCCEEEEeecC-CCCCH-HHHHHHHCCCC
Confidence 0 010 1346789999999765 44444 44556677764
|
| >3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=97.89 E-value=4.5e-05 Score=78.49 Aligned_cols=115 Identities=10% Similarity=0.040 Sum_probs=80.1
Q ss_pred CcEEEEcccH---HHHHHHHHHHHCC-CeEE--EEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhC----CCCcEEEE
Q psy9637 5 GDIGLIGLAV---MGQNLILNMNDHG-FTVV--AYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNL----KKPRRVMM 74 (490)
Q Consensus 5 ~~IgiIGlG~---MG~~lA~~L~~~G-~~V~--v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l----~~~dvIil 74 (490)
+||||||+|. ||...+..+...+ ++|+ ++|+++++.+.+.+.... .....++|++++++.- +..|+|++
T Consensus 13 ~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~g~-~~~~~~~~~~~ll~~~~~~~~~vD~V~i 91 (398)
T 3dty_A 13 IRWAMVGGGSQSQIGYIHRCAALRDNTFVLVAGAFDIDPIRGSAFGEQLGV-DSERCYADYLSMFEQEARRADGIQAVSI 91 (398)
T ss_dssp EEEEEEECCTTCSSHHHHHHHHHGGGSEEEEEEECCSSHHHHHHHHHHTTC-CGGGBCSSHHHHHHHHTTCTTCCSEEEE
T ss_pred ceEEEEcCCccchhHHHHHHHHhhCCCeEEEEEEeCCCHHHHHHHHHHhCC-CcceeeCCHHHHHhcccccCCCCCEEEE
Confidence 5899999999 9999999888765 6776 579999999988765321 0113578999998752 24899999
Q ss_pred ecCCCchHHHHHHhhcccCCCCC-EEEcC-CCCChHHHHHHHHHHHHccccc
Q psy9637 75 LVKAGSAVDDFIDKLVPLLEKGD-IIIDG-GNSEYQDTDRRSKALEAKGLLY 124 (490)
Q Consensus 75 ~vp~~~~v~~vl~~l~~~l~~g~-iiId~-s~~~~~~~~~~~~~l~~~gi~~ 124 (490)
|+|+....+-++..+ +.|+ ++++- -.....+..++.+.++++|+.+
T Consensus 92 ~tp~~~H~~~~~~al----~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~ 139 (398)
T 3dty_A 92 ATPNGTHYSITKAAL----EAGLHVVCEKPLCFTVEQAENLRELSHKHNRIV 139 (398)
T ss_dssp ESCGGGHHHHHHHHH----HTTCEEEECSCSCSCHHHHHHHHHHHHHTTCCE
T ss_pred CCCcHHHHHHHHHHH----HCCCeEEEeCCCcCCHHHHHHHHHHHHHcCCeE
Confidence 999975544443332 3455 44442 1234567777777777777654
|
| >1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=97.88 E-value=3.3e-05 Score=80.83 Aligned_cols=102 Identities=15% Similarity=0.081 Sum_probs=70.9
Q ss_pred CCCCCcEEEEcccHH-HHHHHHHHHHC-----CCeEEEEeCCh--HHHHHHHH---c----ccCCCCeeccCCHHHHHhh
Q psy9637 1 MAAKGDIGLIGLAVM-GQNLILNMNDH-----GFTVVAYNRTT--AKVDSFLA---N----EAKGTNIIGAHSLEELVKN 65 (490)
Q Consensus 1 M~~~~~IgiIGlG~M-G~~lA~~L~~~-----G~~V~v~dr~~--~~~~~l~~---~----g~~~~~i~~~~s~~e~v~~ 65 (490)
|+.++||+|||.|.+ |.+++..|+++ +++|++||+++ ++++.... . .....++..++++.+.++.
T Consensus 4 m~~~~KIaVIGaGsv~~~al~~~L~~~~~~l~~~ev~L~Di~~~~e~~~~~~~~~~~~~~~~~~~~~i~~t~D~~eal~g 83 (450)
T 1s6y_A 4 MDKRLKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDG 83 (450)
T ss_dssp ---CEEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTT
T ss_pred ccCCCEEEEECCCHHHHHHHHHHHHcCCCCCCCCEEEEEEcCCChHHHHHHHHHHHHHHhhcCCCcEEEEeCCHHHHhCC
Confidence 533469999999999 88888888884 67899999999 87665221 1 1113456667788777776
Q ss_pred CCCCcEEEEecCCCc-----------------------------------hHHHHHHhhcccCCCCCEEEcCCCCC
Q psy9637 66 LKKPRRVMMLVKAGS-----------------------------------AVDDFIDKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 66 l~~~dvIil~vp~~~-----------------------------------~v~~vl~~l~~~l~~g~iiId~s~~~ 106 (490)
+|+|++++|.+. .+.++++.+.++ .|+.++|..||-.
T Consensus 84 ---AD~VVitagv~~~~~~~rd~~ip~~~g~~~~et~G~ggi~~~~rni~i~~~i~~~i~~~-~P~a~ii~~tNPv 155 (450)
T 1s6y_A 84 ---ADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEEL-CPDAWLINFTNPA 155 (450)
T ss_dssp ---CSEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEECSSSH
T ss_pred ---CCEEEEcCCCCCCcchhhhhhhhhhcCcccccccccchHHHHhhhHHHHHHHHHHHHHH-CCCeEEEEeCCcH
Confidence 999999999742 133444555544 4888999998844
|
| >3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343} | Back alignment and structure |
|---|
Probab=97.88 E-value=3.6e-05 Score=78.13 Aligned_cols=113 Identities=15% Similarity=0.170 Sum_probs=75.9
Q ss_pred CC-CCCcEEEEcccHHHHH-HHHHHHHC-CCeEE-EEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEec
Q psy9637 1 MA-AKGDIGLIGLAVMGQN-LILNMNDH-GFTVV-AYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLV 76 (490)
Q Consensus 1 M~-~~~~IgiIGlG~MG~~-lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~v 76 (490)
|+ .++||||||+|.||.. .+..|.+. +++|+ ++|+++++. .+.. ..+..++|++++++. ++.|+|++|+
T Consensus 1 M~~~~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~---~~~~---~~~~~~~~~~~ll~~-~~vD~V~i~t 73 (362)
T 3fhl_A 1 MSLEIIKTGLAAFGMSGQVFHAPFISTNPHFELYKIVERSKELS---KERY---PQASIVRSFKELTED-PEIDLIVVNT 73 (362)
T ss_dssp --CCCEEEEESCCSHHHHHTTHHHHHHCTTEEEEEEECSSCCGG---GTTC---TTSEEESCSHHHHTC-TTCCEEEECS
T ss_pred CCCCceEEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHH---HHhC---CCCceECCHHHHhcC-CCCCEEEEeC
Confidence 55 3468999999999997 67777765 67765 789998762 2211 123468999999875 4589999999
Q ss_pred CCCchHHHHHHhhcccCCCCC-EEEcCC-CCChHHHHHHHHHHHHccccc
Q psy9637 77 KAGSAVDDFIDKLVPLLEKGD-IIIDGG-NSEYQDTDRRSKALEAKGLLY 124 (490)
Q Consensus 77 p~~~~v~~vl~~l~~~l~~g~-iiId~s-~~~~~~~~~~~~~l~~~gi~~ 124 (490)
|+....+.++.. |..|+ ++++-- +....+..++.+.++++|+.+
T Consensus 74 p~~~H~~~~~~a----l~aGkhVl~EKP~a~~~~ea~~l~~~a~~~g~~~ 119 (362)
T 3fhl_A 74 PDNTHYEYAGMA----LEAGKNVVVEKPFTSTTKQGEELIALAKKKGLML 119 (362)
T ss_dssp CGGGHHHHHHHH----HHTTCEEEEESSCCSSHHHHHHHHHHHHHHTCCE
T ss_pred ChHHHHHHHHHH----HHCCCeEEEecCCCCCHHHHHHHHHHHHHcCCEE
Confidence 997555444333 33454 555532 334577777777777777654
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.87 E-value=2.3e-05 Score=79.93 Aligned_cols=95 Identities=14% Similarity=0.194 Sum_probs=66.3
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCee-c---cCCHHHHHhhCCCCcEEEEecCCCc
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNII-G---AHSLEELVKNLKKPRRVMMLVKAGS 80 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~-~---~~s~~e~v~~l~~~dvIil~vp~~~ 80 (490)
++|+|+|.|.+|..+++.+...|++|+++||++++.+.+.+.... .+. . ..++.+++.. +|+||.+++...
T Consensus 167 ~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~~~~~g~--~~~~~~~~~~~l~~~~~~---~DvVi~~~g~~~ 241 (369)
T 2eez_A 167 ASVVILGGGTVGTNAAKIALGMGAQVTILDVNHKRLQYLDDVFGG--RVITLTATEANIKKSVQH---ADLLIGAVLVPG 241 (369)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTT--SEEEEECCHHHHHHHHHH---CSEEEECCC---
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhcCc--eEEEecCCHHHHHHHHhC---CCEEEECCCCCc
Confidence 689999999999999999999999999999999988877653221 111 1 1234455554 899999998642
Q ss_pred h-HHHH-HHhhcccCCCCCEEEcCCC
Q psy9637 81 A-VDDF-IDKLVPLLEKGDIIIDGGN 104 (490)
Q Consensus 81 ~-v~~v-l~~l~~~l~~g~iiId~s~ 104 (490)
. ...+ .+..++.++++.+|||.+.
T Consensus 242 ~~~~~li~~~~l~~mk~gg~iV~v~~ 267 (369)
T 2eez_A 242 AKAPKLVTRDMLSLMKEGAVIVDVAV 267 (369)
T ss_dssp ----CCSCHHHHTTSCTTCEEEECC-
T ss_pred cccchhHHHHHHHhhcCCCEEEEEec
Confidence 1 1111 2455566788999999984
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=97.87 E-value=9.2e-05 Score=76.66 Aligned_cols=113 Identities=13% Similarity=0.114 Sum_probs=74.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeec-cCCHHHHHh-hCCCCcEEEEecCCCch
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIG-AHSLEELVK-NLKKPRRVMMLVKAGSA 81 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~-~~s~~e~v~-~l~~~dvIil~vp~~~~ 81 (490)
.++|.|+|+|++|..+++.|.+.|++|++.|+++++++.+.+.+.. -+.. .++++-+-+ .++.+|+||++++++..
T Consensus 4 ~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~~~g~~--vi~GDat~~~~L~~agi~~A~~viv~~~~~~~ 81 (413)
T 3l9w_A 4 GMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETLRKFGMK--VFYGDATRMDLLESAGAAKAEVLINAIDDPQT 81 (413)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHHTTCC--CEESCTTCHHHHHHTTTTTCSEEEECCSSHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHhCCCe--EEEcCCCCHHHHHhcCCCccCEEEECCCChHH
Confidence 4689999999999999999999999999999999999998876543 1111 233333322 35679999999998643
Q ss_pred HHHHHHhhcccCCCC-CEEEcCCCCChHHHHHHHHHHHHcccccc
Q psy9637 82 VDDFIDKLVPLLEKG-DIIIDGGNSEYQDTDRRSKALEAKGLLYV 125 (490)
Q Consensus 82 v~~vl~~l~~~l~~g-~iiId~s~~~~~~~~~~~~~l~~~gi~~l 125 (490)
...++ .++..+.+. .||+-..+ + .....+...|+..+
T Consensus 82 n~~i~-~~ar~~~p~~~Iiara~~--~----~~~~~L~~~Gad~V 119 (413)
T 3l9w_A 82 NLQLT-EMVKEHFPHLQIIARARD--V----DHYIRLRQAGVEKP 119 (413)
T ss_dssp HHHHH-HHHHHHCTTCEEEEEESS--H----HHHHHHHHTTCSSC
T ss_pred HHHHH-HHHHHhCCCCeEEEEECC--H----HHHHHHHHCCCCEE
Confidence 33333 334444555 44443332 1 22344555676543
|
| >2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A | Back alignment and structure |
|---|
Probab=97.87 E-value=2.6e-05 Score=77.36 Aligned_cols=95 Identities=12% Similarity=0.159 Sum_probs=64.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCC--eEEEEeCChHH---HHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCC
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGF--TVVAYNRTTAK---VDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKA 78 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~--~V~v~dr~~~~---~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~ 78 (490)
++||+|||.|.||..+|..|+.+|+ +|+++|++++. ...+.... ..++..+.++++ ++++|+||+++..
T Consensus 14 ~~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~~~~g~a~dl~~~~--~~~i~~t~d~~~----l~~aD~Vi~aag~ 87 (303)
T 2i6t_A 14 VNKITVVGGGELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLEIFN--LPNVEISKDLSA----SAHSKVVIFTVNS 87 (303)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC-----CHHHHHHHT--CTTEEEESCGGG----GTTCSEEEECCCC
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCcchHHHHHHHhhhc--CCCeEEeCCHHH----HCCCCEEEEcCCC
Confidence 4789999999999999999999999 99999999852 11222211 125666666633 3349999999732
Q ss_pred Cc--------------hHHHHHHhhcccCCCCCEEEcCCCC
Q psy9637 79 GS--------------AVDDFIDKLVPLLEKGDIIIDGGNS 105 (490)
Q Consensus 79 ~~--------------~v~~vl~~l~~~l~~g~iiId~s~~ 105 (490)
+. .+++++..+.++. ++.++|..||.
T Consensus 88 ~~pG~tR~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~sNP 127 (303)
T 2i6t_A 88 LGSSQSYLDVVQSNVDMFRALVPALGHYS-QHSVLLVASQP 127 (303)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHHHHT-TTCEEEECSSS
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEcCCh
Confidence 21 2445556666654 78888888883
|
| >4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A* | Back alignment and structure |
|---|
Probab=97.86 E-value=1e-05 Score=82.74 Aligned_cols=111 Identities=16% Similarity=0.211 Sum_probs=75.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHHC--CCeEE-EEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCc
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDH--GFTVV-AYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGS 80 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~--G~~V~-v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~ 80 (490)
+.||+|||+| +|...+..+.+. +++++ ++|+++++.+++.++.. +..++|++++.++ +|++++++|+..
T Consensus 7 ~~rv~VvG~G-~g~~h~~a~~~~~~~~elvav~~~~~~~a~~~a~~~g----v~~~~~~~~l~~~---~D~v~i~~p~~~ 78 (372)
T 4gmf_A 7 KQRVLIVGAK-FGEMYLNAFMQPPEGLELVGLLAQGSARSRELAHAFG----IPLYTSPEQITGM---PDIACIVVRSTV 78 (372)
T ss_dssp CEEEEEECST-TTHHHHHTTSSCCTTEEEEEEECCSSHHHHHHHHHTT----CCEESSGGGCCSC---CSEEEECCC--C
T ss_pred CCEEEEEehH-HHHHHHHHHHhCCCCeEEEEEECCCHHHHHHHHHHhC----CCEECCHHHHhcC---CCEEEEECCCcc
Confidence 4689999999 799888888765 57766 78999999999887642 3367899998765 899999999864
Q ss_pred hH---HHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccccc
Q psy9637 81 AV---DDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYV 125 (490)
Q Consensus 81 ~v---~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~l 125 (490)
.. -++... .|+.|+-|+--=-....+..++.+..+++|+.|.
T Consensus 79 h~~~~~~~a~~---al~aGkhVl~EKPl~~~ea~~l~~~A~~~g~~~~ 123 (372)
T 4gmf_A 79 AGGAGTQLARH---FLARGVHVIQEHPLHPDDISSLQTLAQEQGCCYW 123 (372)
T ss_dssp TTSHHHHHHHH---HHHTTCEEEEESCCCHHHHHHHHHHHHHHTCCEE
T ss_pred cchhHHHHHHH---HHHcCCcEEEecCCCHHHHHHHHHHHHHcCCEEE
Confidence 42 222222 2334553332222345677777777777887653
|
| >1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1 | Back alignment and structure |
|---|
Probab=97.84 E-value=3.7e-05 Score=79.39 Aligned_cols=94 Identities=20% Similarity=0.224 Sum_probs=66.3
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHc-ccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGF-TVVAYNRTTAKVDSFLAN-EAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAV 82 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~-g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v 82 (490)
++|+|||+|.||..++..|...|. +|+++||++++.+.+.+. +.. +....++.+++.. +|+||.++|.+..+
T Consensus 168 ~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r~~~ra~~la~~~g~~---~~~~~~l~~~l~~---aDvVi~at~~~~~~ 241 (404)
T 1gpj_A 168 KTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGE---AVRFDELVDHLAR---SDVVVSATAAPHPV 241 (404)
T ss_dssp CEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCE---ECCGGGHHHHHHT---CSEEEECCSSSSCC
T ss_pred CEEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCc---eecHHhHHHHhcC---CCEEEEccCCCCce
Confidence 589999999999999999999998 999999999988666543 321 1123456666655 89999999886544
Q ss_pred H--HHHHh-hcc-cCCCCCEEEcCCC
Q psy9637 83 D--DFIDK-LVP-LLEKGDIIIDGGN 104 (490)
Q Consensus 83 ~--~vl~~-l~~-~l~~g~iiId~s~ 104 (490)
. +.+.. +++ .-.++.++||.+.
T Consensus 242 ~~~~~l~~~~lk~r~~~~~v~vdia~ 267 (404)
T 1gpj_A 242 IHVDDVREALRKRDRRSPILIIDIAN 267 (404)
T ss_dssp BCHHHHHHHHHHCSSCCCEEEEECCS
T ss_pred ecHHHHHHHHHhccCCCCEEEEEccC
Confidence 2 33443 221 1124567788764
|
| >3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=97.83 E-value=9.4e-05 Score=74.58 Aligned_cols=103 Identities=11% Similarity=0.108 Sum_probs=68.4
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHHCC--CeEEEEeCChHHHHH----HHHcccCCCCeeccCCHHHHHhhCCCCcEEEEec
Q psy9637 4 KGDIGLIGL-AVMGQNLILNMNDHG--FTVVAYNRTTAKVDS----FLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLV 76 (490)
Q Consensus 4 ~~~IgiIGl-G~MG~~lA~~L~~~G--~~V~v~dr~~~~~~~----l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~v 76 (490)
++||+|||. |.+|.++|..++..| .+|+++|+++++++. +........++...+++.+.++. +|+||++.
T Consensus 8 ~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~~~~~~~i~~t~d~~~al~d---ADvVvita 84 (343)
T 3fi9_A 8 EEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCGFEGLNLTFTSDIKEALTD---AKYIVSSG 84 (343)
T ss_dssp SSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHHCCTTCCCEEESCHHHHHTT---EEEEEECC
T ss_pred CCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhCcCCCCceEEcCCHHHHhCC---CCEEEEcc
Confidence 579999998 999999999999998 489999999887664 33221112345556777776666 89999986
Q ss_pred CCCc---------------hHHHHHHhhcccCCCCCE-EEcCCCCChHHHHH
Q psy9637 77 KAGS---------------AVDDFIDKLVPLLEKGDI-IIDGGNSEYQDTDR 112 (490)
Q Consensus 77 p~~~---------------~v~~vl~~l~~~l~~g~i-iId~s~~~~~~~~~ 112 (490)
..+. .++++.+.+..+- ++.+ |+..|| |-++.-
T Consensus 85 G~p~kpG~~R~dLl~~N~~I~~~i~~~i~~~~-p~a~~vlvvsN--Pvd~~t 133 (343)
T 3fi9_A 85 GAPRKEGMTREDLLKGNAEIAAQLGKDIKSYC-PDCKHVIIIFN--PADITG 133 (343)
T ss_dssp C-------CHHHHHHHHHHHHHHHHHHHHHHC-TTCCEEEECSS--SHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhc-cCcEEEEEecC--chHHHH
Confidence 3321 1223334455544 5564 777776 444443
|
| >1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A* | Back alignment and structure |
|---|
Probab=97.81 E-value=2.9e-05 Score=77.60 Aligned_cols=89 Identities=8% Similarity=0.204 Sum_probs=62.5
Q ss_pred CCCCCcEEEEcccHHHHHHHHHHHHC-CCeE-EEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCC
Q psy9637 1 MAAKGDIGLIGLAVMGQNLILNMNDH-GFTV-VAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKA 78 (490)
Q Consensus 1 M~~~~~IgiIGlG~MG~~lA~~L~~~-G~~V-~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~ 78 (490)
|+ ++||+|||+|+||..++..|.++ ++++ .++|+++++ .+. ..+..++++++++. ++|+|++|+|+
T Consensus 1 M~-~irV~IiG~G~mG~~~~~~l~~~~~~elvav~d~~~~~--~~~------~gv~~~~d~~~ll~---~~DvViiatp~ 68 (320)
T 1f06_A 1 MT-NIRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATL--DTK------TPVFDVADVDKHAD---DVDVLFLCMGS 68 (320)
T ss_dssp CC-CEEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCC--SSS------SCEEEGGGGGGTTT---TCSEEEECSCT
T ss_pred CC-CCEEEEEeecHHHHHHHHHHhcCCCCEEEEEEcCCHHH--hhc------CCCceeCCHHHHhc---CCCEEEEcCCc
Confidence 63 46999999999999999999887 5664 478998654 211 12334667777653 49999999998
Q ss_pred CchHHHHHHhhcccCCCCCEEEcCCCC
Q psy9637 79 GSAVDDFIDKLVPLLEKGDIIIDGGNS 105 (490)
Q Consensus 79 ~~~v~~vl~~l~~~l~~g~iiId~s~~ 105 (490)
....+.+. ..++.|..||+....
T Consensus 69 ~~h~~~~~----~al~aG~~Vv~ekp~ 91 (320)
T 1f06_A 69 ATDIPEQA----PKFAQFACTVDTYDN 91 (320)
T ss_dssp TTHHHHHH----HHHTTTSEEECCCCC
T ss_pred HHHHHHHH----HHHHCCCEEEECCCC
Confidence 65444443 345568878876653
|
| >3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} | Back alignment and structure |
|---|
Probab=97.80 E-value=4.2e-05 Score=76.27 Aligned_cols=95 Identities=13% Similarity=0.126 Sum_probs=63.0
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC--eEEEEeCChHHHHHH----HHcc---cCCCCeeccCCHHHHHhhCCCCcEEEEe
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGF--TVVAYNRTTAKVDSF----LANE---AKGTNIIGAHSLEELVKNLKKPRRVMML 75 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~--~V~v~dr~~~~~~~l----~~~g---~~~~~i~~~~s~~e~v~~l~~~dvIil~ 75 (490)
|||+|||+|.||.++|..|+.+|+ +|+++|+++++++.. .... ....++..+++. +.++ .+|+||++
T Consensus 1 Mkv~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~~v~~~~~~-~a~~---~aDvVii~ 76 (314)
T 3nep_X 1 MKVTVIGAGNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVTGTNDY-GPTE---DSDVCIIT 76 (314)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSSEEEEECSSTTHHHHHHHHHHHHHHHHTCCCEEEEESSS-GGGT---TCSEEEEC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHhccccccCCCcEEEECCCH-HHhC---CCCEEEEC
Confidence 589999999999999999999887 999999999876532 2110 011223323333 3333 49999999
Q ss_pred cCCCc---------------hHHHHHHhhcccCCCCCEEEcCCC
Q psy9637 76 VKAGS---------------AVDDFIDKLVPLLEKGDIIIDGGN 104 (490)
Q Consensus 76 vp~~~---------------~v~~vl~~l~~~l~~g~iiId~s~ 104 (490)
.+.+. .++++.+.+..+ .|+.+++..||
T Consensus 77 ag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~-~p~a~vivvtN 119 (314)
T 3nep_X 77 AGLPRSPGMSRDDLLAKNTEIVGGVTEQFVEG-SPDSTIIVVAN 119 (314)
T ss_dssp CCC-------CHHHHHHHHHHHHHHHHHHHTT-CTTCEEEECCS
T ss_pred CCCCCCCCCCHHHHHHhhHHHHHHHHHHHHHh-CCCcEEEecCC
Confidence 86542 122333455554 57888999987
|
| >3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A | Back alignment and structure |
|---|
Probab=97.79 E-value=3.7e-05 Score=75.54 Aligned_cols=115 Identities=16% Similarity=0.156 Sum_probs=76.8
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHcccC---CCCeecc--CCHHHHHhhCCCCcEEEEecCC
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGF-TVVAYNRTTAKVDSFLANEAK---GTNIIGA--HSLEELVKNLKKPRRVMMLVKA 78 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~g~~---~~~i~~~--~s~~e~v~~l~~~dvIil~vp~ 78 (490)
+++.|+|.|.+|.+++..|++.|. +|+++||++++.+.+.+.... ...+... +++.+.+.. +|+||.++|.
T Consensus 128 k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~i~~~~~~~l~~~l~~---~DiVInaTp~ 204 (283)
T 3jyo_A 128 DSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAA---ADGVVNATPM 204 (283)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHHTSCCEEEECSTTHHHHHHH---SSEEEECSST
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEcCHHHHHHHHhc---CCEEEECCCC
Confidence 579999999999999999999998 799999999998887653211 1122233 367777666 8999999997
Q ss_pred CchHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccc
Q psy9637 79 GSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLY 124 (490)
Q Consensus 79 ~~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ 124 (490)
+-.-..-..--...++++.+|+|.--. |..|. ..+..+++|...
T Consensus 205 Gm~~~~~~pi~~~~l~~~~~v~DlvY~-P~~T~-ll~~A~~~G~~~ 248 (283)
T 3jyo_A 205 GMPAHPGTAFDVSCLTKDHWVGDVVYM-PIETE-LLKAARALGCET 248 (283)
T ss_dssp TSTTSCSCSSCGGGCCTTCEEEECCCS-SSSCH-HHHHHHHHTCCE
T ss_pred CCCCCCCCCCCHHHhCCCCEEEEecCC-CCCCH-HHHHHHHCcCeE
Confidence 632110000012356788999998653 33332 334445667544
|
| >2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=97.79 E-value=5.4e-05 Score=75.28 Aligned_cols=99 Identities=19% Similarity=0.259 Sum_probs=68.2
Q ss_pred cEEEEcccHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHcc-------cCCCCeeccCCHHHHHhhCCCCcEEEEecC
Q psy9637 6 DIGLIGLAVMGQNLILNMNDHGF-TVVAYNRTTAKVDSFLANE-------AKGTNIIGAHSLEELVKNLKKPRRVMMLVK 77 (490)
Q Consensus 6 ~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~g-------~~~~~i~~~~s~~e~v~~l~~~dvIil~vp 77 (490)
||+|||+|.||.+++..|+.+|+ +|.++|+++++++.....- ....++..+.+.+ . ++.+|+||++.+
T Consensus 1 KI~IiGaG~vG~~~a~~l~~~~l~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~~-a---~~~aD~Vi~~ag 76 (308)
T 2d4a_B 1 MITILGAGKVGMATAVMLMMRGYDDLLLIARTPGKPQGEALDLAHAAAELGVDIRISGSNSYE-D---MRGSDIVLVTAG 76 (308)
T ss_dssp CEEEECCSHHHHHHHHHHHHHTCSCEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCGG-G---GTTCSEEEECCS
T ss_pred CEEEECcCHHHHHHHHHHHhCCCCEEEEEcCChhhHHHHHHHHHHhhhhcCCCeEEEECCCHH-H---hCCCCEEEEeCC
Confidence 69999999999999999998888 6999999988776422110 1123455545653 3 334999999976
Q ss_pred CCc---------------hHHHHHHhhcccCCCCCEEEcCCCCChHHHH
Q psy9637 78 AGS---------------AVDDFIDKLVPLLEKGDIIIDGGNSEYQDTD 111 (490)
Q Consensus 78 ~~~---------------~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~ 111 (490)
.+. .++++++.+.++. |+.++|..|| |-+..
T Consensus 77 ~~~k~G~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~tN--Pv~~~ 122 (308)
T 2d4a_B 77 IGRKPGMTREQLLEANANTMADLAEKIKAYA-KDAIVVITTN--PVDAM 122 (308)
T ss_dssp CCCCSSCCTHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECCS--SHHHH
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEeCC--chHHH
Confidence 543 1455666666654 6777777877 44443
|
| >3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A | Back alignment and structure |
|---|
Probab=97.77 E-value=5e-05 Score=76.65 Aligned_cols=113 Identities=12% Similarity=0.140 Sum_probs=73.4
Q ss_pred CCcEEEEcccHHHHH-HHHHHHHC-CCeEE-EEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCc
Q psy9637 4 KGDIGLIGLAVMGQN-LILNMNDH-GFTVV-AYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGS 80 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~-lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~ 80 (490)
++||||||+|.||.. .+..|.+. +++|+ ++|++ +.+.+.+.... ..+..+++++++++. ++.|+|++|+|+..
T Consensus 2 ~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~--~~~~~a~~~~~-~~~~~~~~~~~ll~~-~~~D~V~i~tp~~~ 77 (349)
T 3i23_A 2 TVKMGFIGFGKSANRYHLPYVMIRETLEVKTIFDLH--VNEKAAAPFKE-KGVNFTADLNELLTD-PEIELITICTPAHT 77 (349)
T ss_dssp CEEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECTT--CCHHHHHHHHT-TTCEEESCTHHHHSC-TTCCEEEECSCGGG
T ss_pred eeEEEEEccCHHHHHHHHHHHhhCCCeEEEEEECCC--HHHHHHHhhCC-CCCeEECCHHHHhcC-CCCCEEEEeCCcHH
Confidence 469999999999984 55556554 67765 78988 34444433110 123468899999875 35899999999975
Q ss_pred hHHHHHHhhcccCCCCC-EEEcCC-CCChHHHHHHHHHHHHccccc
Q psy9637 81 AVDDFIDKLVPLLEKGD-IIIDGG-NSEYQDTDRRSKALEAKGLLY 124 (490)
Q Consensus 81 ~v~~vl~~l~~~l~~g~-iiId~s-~~~~~~~~~~~~~l~~~gi~~ 124 (490)
..+.+... ++.|+ ++++-- .....+..++.+.++++|+.+
T Consensus 78 h~~~~~~a----l~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~g~~~ 119 (349)
T 3i23_A 78 HYDLAKQA----ILAGKSVIVEKPFCDTLEHAEELFALGQEKGVVV 119 (349)
T ss_dssp HHHHHHHH----HHTTCEEEECSCSCSSHHHHHHHHHHHHHTTCCE
T ss_pred HHHHHHHH----HHcCCEEEEECCCcCCHHHHHHHHHHHHHcCCeE
Confidence 54444332 33454 455432 234567777777777777654
|
| >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
|---|
Probab=97.76 E-value=3.3e-05 Score=79.23 Aligned_cols=96 Identities=22% Similarity=0.288 Sum_probs=65.1
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCC------------------------HH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHS------------------------LE 60 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s------------------------~~ 60 (490)
.+|+|+|+|.+|...+..+...|.+|+++|+++++.+.+.+.+.. ....++ ..
T Consensus 173 ~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~~~~~~~~~~Ga~---~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 249 (384)
T 1l7d_A 173 ARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGK---FITVDDEAMKTAETAGGYAKEMGEEFRKKQAE 249 (384)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCE---ECCC-----------------------CCHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCe---EEeecccccccccccccchhhcCHHHHhhhHH
Confidence 589999999999999999999999999999999887777665432 110001 11
Q ss_pred HHHhhCCCCcEEEEec--CCCchHHHHH-HhhcccCCCCCEEEcCCC
Q psy9637 61 ELVKNLKKPRRVMMLV--KAGSAVDDFI-DKLVPLLEKGDIIIDGGN 104 (490)
Q Consensus 61 e~v~~l~~~dvIil~v--p~~~~v~~vl-~~l~~~l~~g~iiId~s~ 104 (490)
.+.+.++.+|+||.++ |.... ..++ .+.+..+++|.+|||.+.
T Consensus 250 ~l~~~~~~aDvVi~~~~~pg~~~-~~li~~~~l~~mk~g~vivdva~ 295 (384)
T 1l7d_A 250 AVLKELVKTDIAITTALIPGKPA-PVLITEEMVTKMKPGSVIIDLAV 295 (384)
T ss_dssp HHHHHHTTCSEEEECCCCTTSCC-CCCSCHHHHTTSCTTCEEEETTG
T ss_pred HHHHHhCCCCEEEECCccCCCCC-CeeeCHHHHhcCCCCCEEEEEec
Confidence 1222334499999998 42111 1111 344556789999999984
|
| >2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00013 Score=73.16 Aligned_cols=101 Identities=14% Similarity=0.093 Sum_probs=65.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCC--eEEEEeCChHHHHHHHHcccC----CCCeeccCCHHHHHhhCCCCcEEEEecC
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGF--TVVAYNRTTAKVDSFLANEAK----GTNIIGAHSLEELVKNLKKPRRVMMLVK 77 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~g~~----~~~i~~~~s~~e~v~~l~~~dvIil~vp 77 (490)
++||+|||+|.+|.+++..|+.+++ +|.++|+++++++.....-.. ..++....+..+.++. +|+||++.+
T Consensus 9 ~~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~a~~~---aDvVii~ag 85 (326)
T 2zqz_A 9 HQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKIYSAEYSDAKD---ADLVVITAG 85 (326)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGGG---CSEEEECCC
T ss_pred CCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHHHHHHHHHHHhcCCeEEEECCHHHhCC---CCEEEEcCC
Confidence 4799999999999999999998886 899999999887653321111 0122222233333444 999999986
Q ss_pred CCch---------------HHHHHHhhcccCCCCCEEEcCCCCChHHH
Q psy9637 78 AGSA---------------VDDFIDKLVPLLEKGDIIIDGGNSEYQDT 110 (490)
Q Consensus 78 ~~~~---------------v~~vl~~l~~~l~~g~iiId~s~~~~~~~ 110 (490)
.+.. ++++.+.+..+ .|+.+||..+| |-+.
T Consensus 86 ~~~k~g~~R~dl~~~n~~i~~~i~~~i~~~-~p~a~iiv~tN--Pv~~ 130 (326)
T 2zqz_A 86 APQKPGETRLDLVNKNLKILKSIVDPIVDS-GFNGIFLVAAN--PVDI 130 (326)
T ss_dssp CC-----CHHHHHHHHHHHHHHHHHHHHHH-TCCSEEEECSS--SHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEeCC--cHHH
Confidence 5421 23333445554 47777777876 4444
|
| >2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A* | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00015 Score=71.46 Aligned_cols=113 Identities=15% Similarity=0.057 Sum_probs=74.6
Q ss_pred CCCcEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCch
Q psy9637 3 AKGDIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSA 81 (490)
Q Consensus 3 ~~~~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~ 81 (490)
..+||+|+|+ |+||..++++|.+.|++ .++..+|.+.. +. ...+..+.|++|+.+. ..+|++++++|+. .
T Consensus 6 ~~~rVaViG~sG~~G~~~~~~l~~~g~~-~V~~V~p~~~g---~~---~~G~~vy~sl~el~~~-~~~D~viI~tP~~-~ 76 (288)
T 2nu8_A 6 KNTKVICQGFTGSQGTFHSEQAIAYGTK-MVGGVTPGKGG---TT---HLGLPVFNTVREAVAA-TGATASVIYVPAP-F 76 (288)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHTCE-EEEEECTTCTT---CE---ETTEEEESSHHHHHHH-HCCCEEEECCCGG-G
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCe-EEEEeCCCccc---ce---eCCeeccCCHHHHhhc-CCCCEEEEecCHH-H
Confidence 4578999998 99999999999999998 44555543210 00 1124467899999872 1289999999995 6
Q ss_pred HHHHHHhhcccCCCCCEEEcCCCCCh-HHHHHHHHHHHHccccccc
Q psy9637 82 VDDFIDKLVPLLEKGDIIIDGGNSEY-QDTDRRSKALEAKGLLYVG 126 (490)
Q Consensus 82 v~~vl~~l~~~l~~g~iiId~s~~~~-~~~~~~~~~l~~~gi~~ld 126 (490)
+.+++.++...= . ..+|..+...+ .+..++.+.+++.|+.++.
T Consensus 77 ~~~~~~ea~~~G-i-~~iVi~t~G~~~~~~~~l~~~A~~~gv~liG 120 (288)
T 2nu8_A 77 CKDSILEAIDAG-I-KLIITITEGIPTLDMLTVKVKLDEAGVRMIG 120 (288)
T ss_dssp HHHHHHHHHHTT-C-SEEEECCCCCCHHHHHHHHHHHHHHTCEEEC
T ss_pred HHHHHHHHHHCC-C-CEEEEECCCCCHHHHHHHHHHHHHcCCEEEe
Confidence 666666655421 1 33344554443 3444556777778887763
|
| >3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum} | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00014 Score=74.17 Aligned_cols=113 Identities=13% Similarity=0.209 Sum_probs=77.3
Q ss_pred CCcEEEEc-ccHHHHH-HH----HHHHHCC-CeE----------EEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhC
Q psy9637 4 KGDIGLIG-LAVMGQN-LI----LNMNDHG-FTV----------VAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNL 66 (490)
Q Consensus 4 ~~~IgiIG-lG~MG~~-lA----~~L~~~G-~~V----------~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l 66 (490)
++|||||| +|.||.. .+ ..+.+.+ ..+ .++|+++++.+.+.+.... ...++|++++++.
T Consensus 6 ~irigiiG~~G~~g~~~h~~~~~~~~~~~~~~~l~~~~~~~~~~av~~~~~~~a~~~a~~~~~---~~~~~~~~~ll~~- 81 (383)
T 3oqb_A 6 RLGLIMNGVTGRMGLNQHLIRSIVAIRDQGGVRLKNGDRIMPDPILVGRSAEKVEALAKRFNI---ARWTTDLDAALAD- 81 (383)
T ss_dssp EEEEEEESTTSTHHHHTTTTTTHHHHHHHTSEECTTSCEEEEEEEEECSSSHHHHHHHHHTTC---CCEESCHHHHHHC-
T ss_pred eeEEEEEeccchhhhhhhHHHHHHHHhhcCceeecCCcccceeeEEEcCCHHHHHHHHHHhCC---CcccCCHHHHhcC-
Confidence 36899999 9999998 66 6666554 222 4999999999988765321 1257899999975
Q ss_pred CCCcEEEEecCCCchHHHHHHhhcccCCCCCEEE-cCC-CCChHHHHHHHHHHHHccccc
Q psy9637 67 KKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIII-DGG-NSEYQDTDRRSKALEAKGLLY 124 (490)
Q Consensus 67 ~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iiI-d~s-~~~~~~~~~~~~~l~~~gi~~ 124 (490)
+..|+|++++|+....+-+... |+.|+-|+ +-- .....+..++.+.++++|+.+
T Consensus 82 ~~iD~V~i~tp~~~h~~~~~~a----l~~Gk~V~~EKP~a~~~~~~~~l~~~a~~~~~~~ 137 (383)
T 3oqb_A 82 KNDTMFFDAATTQARPGLLTQA----INAGKHVYCEKPIATNFEEALEVVKLANSKGVKH 137 (383)
T ss_dssp SSCCEEEECSCSSSSHHHHHHH----HTTTCEEEECSCSCSSHHHHHHHHHHHHHTTCCE
T ss_pred CCCCEEEECCCchHHHHHHHHH----HHCCCeEEEcCCCCCCHHHHHHHHHHHHHcCCeE
Confidence 4589999999997554444333 34565444 321 234567777777777777643
|
| >4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida} | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00013 Score=74.10 Aligned_cols=110 Identities=19% Similarity=0.191 Sum_probs=74.5
Q ss_pred CcEEEEcccHHHHHHHHHHHHCC--------CeE-EEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEe
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHG--------FTV-VAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMML 75 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G--------~~V-~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~ 75 (490)
-||||||+|.||...+..+.+.. .+| .++|+++++++.+.++... ...++|++++++. ++.|+|+++
T Consensus 7 lrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~l~av~d~~~~~a~~~a~~~g~---~~~~~d~~~ll~~-~~iDaV~I~ 82 (390)
T 4h3v_A 7 LGIGLIGYAFMGAAHSQAWRSAPRFFDLPLHPDLNVLCGRDAEAVRAAAGKLGW---STTETDWRTLLER-DDVQLVDVC 82 (390)
T ss_dssp EEEEEECHHHHHHHHHHHHHHHHHHSCCSSEEEEEEEECSSHHHHHHHHHHHTC---SEEESCHHHHTTC-TTCSEEEEC
T ss_pred CcEEEEcCCHHHHHHHHHHHhCccccccccCceEEEEEcCCHHHHHHHHHHcCC---CcccCCHHHHhcC-CCCCEEEEe
Confidence 37999999999999888876532 244 4789999999988765321 1357899999875 458999999
Q ss_pred cCCCchHHHHHHhhcccCCCCC-EEEc--CCCCChHHHHHHH---HHHHHcccc
Q psy9637 76 VKAGSAVDDFIDKLVPLLEKGD-IIID--GGNSEYQDTDRRS---KALEAKGLL 123 (490)
Q Consensus 76 vp~~~~v~~vl~~l~~~l~~g~-iiId--~s~~~~~~~~~~~---~~l~~~gi~ 123 (490)
+|+....+-++..+ +.|+ ++++ ++. ...+..++. ++..++|+.
T Consensus 83 tP~~~H~~~~~~al----~aGkhVl~EKPla~-t~~ea~~l~~~~~~~~~~g~~ 131 (390)
T 4h3v_A 83 TPGDSHAEIAIAAL----EAGKHVLCEKPLAN-TVAEAEAMAAAAAKAAAGGIR 131 (390)
T ss_dssp SCGGGHHHHHHHHH----HTTCEEEEESSSCS-SHHHHHHHHHHHHHHHHTTCC
T ss_pred CChHHHHHHHHHHH----HcCCCceeecCccc-chhHHHHHHHHHHHHHhcCCc
Confidence 99976655554443 3454 4554 333 345666663 334445553
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=97.68 E-value=9.7e-05 Score=69.97 Aligned_cols=97 Identities=11% Similarity=0.147 Sum_probs=67.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeec-cCCHHHHHh-hCCCCcEEEEecCCCch
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIG-AHSLEELVK-NLKKPRRVMMLVKAGSA 81 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~-~~s~~e~v~-~l~~~dvIil~vp~~~~ 81 (490)
.++|.|+|+|.+|..++..|.+.|+ |++.|+++++++.+. .+.. -+.. .++++.+.+ .++.+|.|+++++++ .
T Consensus 9 ~~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~~~~~~~~-~~~~--~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d-~ 83 (234)
T 2aef_A 9 SRHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKKVLR-SGAN--FVHGDPTRVSDLEKANVRGARAVIVDLESD-S 83 (234)
T ss_dssp -CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGGGHHHHHH-TTCE--EEESCTTCHHHHHHTTCTTCSEEEECCSCH-H
T ss_pred CCEEEEECCChHHHHHHHHHHhCCe-EEEEECCHHHHHHHh-cCCe--EEEcCCCCHHHHHhcCcchhcEEEEcCCCc-H
Confidence 4689999999999999999999999 999999999988776 3321 0111 234444433 367799999999885 3
Q ss_pred HHHHHHhhcccCCCC-CEEEcCCCC
Q psy9637 82 VDDFIDKLVPLLEKG-DIIIDGGNS 105 (490)
Q Consensus 82 v~~vl~~l~~~l~~g-~iiId~s~~ 105 (490)
....+...+..+.++ .+|+...+.
T Consensus 84 ~n~~~~~~a~~~~~~~~iia~~~~~ 108 (234)
T 2aef_A 84 ETIHCILGIRKIDESVRIIAEAERY 108 (234)
T ss_dssp HHHHHHHHHHHHCSSSEEEEECSSG
T ss_pred HHHHHHHHHHHHCCCCeEEEEECCH
Confidence 333333344445565 677777653
|
| >3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00015 Score=72.66 Aligned_cols=97 Identities=13% Similarity=0.084 Sum_probs=64.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCC--eEEEEeCChHHHHHHHHc---ccC-CCCeeccCCHHHHHhhCCCCcEEEEecC
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGF--TVVAYNRTTAKVDSFLAN---EAK-GTNIIGAHSLEELVKNLKKPRRVMMLVK 77 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~---g~~-~~~i~~~~s~~e~v~~l~~~dvIil~vp 77 (490)
.+||+|||+|.||.++|..|+..|+ +|+++|+++++++..... ... ..++....+..+. ++++|+||++..
T Consensus 9 ~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~i~~~~~~a---~~~aDiVvi~ag 85 (326)
T 3vku_A 9 HQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKKIYSAEYSD---AKDADLVVITAG 85 (326)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGG---GTTCSEEEECCC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhhhhcCCcEEEECcHHH---hcCCCEEEECCC
Confidence 4799999999999999999999988 899999999887743221 110 0122222332333 344999999875
Q ss_pred CCc---------------hHHHHHHhhcccCCCCCEEEcCCC
Q psy9637 78 AGS---------------AVDDFIDKLVPLLEKGDIIIDGGN 104 (490)
Q Consensus 78 ~~~---------------~v~~vl~~l~~~l~~g~iiId~s~ 104 (490)
.+. .++++.+.+..+ .|+.+++..||
T Consensus 86 ~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~-~p~a~ilvvtN 126 (326)
T 3vku_A 86 APQKPGETRLDLVNKNLKILKSIVDPIVDS-GFNGIFLVAAN 126 (326)
T ss_dssp CC----------------CHHHHHHHHHTT-TCCSEEEECSS
T ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHHhc-CCceEEEEccC
Confidence 432 133444555554 46788888887
|
| >4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00014 Score=72.94 Aligned_cols=97 Identities=11% Similarity=0.170 Sum_probs=67.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCC--eEEEEeCChHHHHHHH----Hcc--cCCCCeeccCCHHHHHhhCCCCcEEEEe
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGF--TVVAYNRTTAKVDSFL----ANE--AKGTNIIGAHSLEELVKNLKKPRRVMML 75 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~----~~g--~~~~~i~~~~s~~e~v~~l~~~dvIil~ 75 (490)
.+||+|||+|.||..+|..|+.+|+ +|+++|+++++++... ... .....+....++++ ++++|+||++
T Consensus 19 ~~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~~~d~~~----~~~aDiVvi~ 94 (331)
T 4aj2_A 19 QNKITVVGVGAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVSSKDYSV----TANSKLVIIT 94 (331)
T ss_dssp SSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCSCCEEEECSSGGG----GTTEEEEEEC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhhhhccCCCeEEEcCCHHH----hCCCCEEEEc
Confidence 4799999999999999999999998 8999999988776532 211 01123344556654 3348999998
Q ss_pred cCCCc---------------hHHHHHHhhcccCCCCCEEEcCCCC
Q psy9637 76 VKAGS---------------AVDDFIDKLVPLLEKGDIIIDGGNS 105 (490)
Q Consensus 76 vp~~~---------------~v~~vl~~l~~~l~~g~iiId~s~~ 105 (490)
...+. .++++.+.+..+ .|+.+++..||-
T Consensus 95 aG~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~-~p~a~vlvvtNP 138 (331)
T 4aj2_A 95 AGARQQEGESRLNLVQRNVNIFKFIIPNVVKY-SPQCKLLIVSNP 138 (331)
T ss_dssp CSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHH-CTTCEEEECSSS
T ss_pred cCCCCCCCccHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEecCh
Confidence 74321 133444556665 678899999873
|
| >1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00013 Score=71.57 Aligned_cols=102 Identities=17% Similarity=0.197 Sum_probs=74.4
Q ss_pred ceeecCCCCcchhHHhhhhHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhccCcchhHHHHHH-HHHhcccC-CCCC
Q psy9637 349 CDWVGEQGAGHFVKMVHNGIEYGDMQLICEAYHLMTGALGMSHDEMSAVFEDWNKGELDSFLIEIT-KDILKFKD-TDGA 426 (490)
Q Consensus 349 ~~~~g~~g~gh~vkmvhngiey~~m~~~~E~~~~~~~~~~~~~~~~~~~~~~w~~g~~~s~l~~~~-~~~~~~~~-~~~~ 426 (490)
+.++|+.|+|+++|+++|.+-+.++++++|++.+++. .|++. ..+.+.+..+...||.++.. ...++. + ..|
T Consensus 162 ~~~~~~~~~~~~~Kl~~n~~~~~~~~~~~Ea~~l~~~-~G~~~---~~~~~~~~~~~~~s~~~~~~~~~~l~~-~~~~g- 235 (299)
T 1vpd_A 162 VVHTGDIGAGNVTKLANQVIVALNIAAMSEALTLATK-AGVNP---DLVYQAIRGGLAGSTVLDAKAPMVMDR-NFKPG- 235 (299)
T ss_dssp EEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCCH---HHHHHHHTTSTTCCHHHHHHHHHHHTT-CCCCS-
T ss_pred eEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCH---HHHHHHHHccCCCCHHHHHhhhHhhcC-CCCCC-
Confidence 3467889999999999999999999999999999987 88854 56666677776677776533 233432 2 122
Q ss_pred cchhhhccccCCCcchHHHHHHHHhcCCCchhhHHH
Q psy9637 427 PLVEKIKDYAGQKGTGKWTAISALDYGVPVTLIGES 462 (490)
Q Consensus 427 ~~l~~i~~~~~~~g~g~w~~~~a~~~~~p~~~i~~a 462 (490)
..++.+.. +-++.++.|.++|+|+|++...
T Consensus 236 ~~~~~~~k------d~~~~~~~a~~~gv~~p~~~~~ 265 (299)
T 1vpd_A 236 FRIDLHIK------DLANALDTSHGVGAQLPLTAAV 265 (299)
T ss_dssp SBHHHHHH------HHHHHHHHHHHHTCCCHHHHHH
T ss_pred CChHHHHH------HHHHHHHHHHHcCCCChHHHHH
Confidence 23443331 3458999999999999987663
|
| >3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00025 Score=73.82 Aligned_cols=119 Identities=18% Similarity=0.268 Sum_probs=77.0
Q ss_pred CcEEEEcccHHHHHHHHHHHHC----------CCeEE-EEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEE
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDH----------GFTVV-AYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVM 73 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~----------G~~V~-v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIi 73 (490)
.+|||||+|.||..++..|.++ +.+|+ ++|+++++.+.+.. + ...+++++++++. +..|+|+
T Consensus 11 irIgIIG~G~VG~~~~~~L~~~~~~l~~~~g~~i~lvaV~d~~~~~~~~~~~-~-----~~~~~d~~ell~d-~diDvVv 83 (444)
T 3mtj_A 11 IHVGLLGLGTVGGGTLTVLRRNAEEITRRAGREIRVVRAAVRNLDKAEALAG-G-----LPLTTNPFDVVDD-PEIDIVV 83 (444)
T ss_dssp EEEEEECCHHHHHHHHHHHHHTHHHHHHHHSSCEEEEEEECSCHHHHHHHHT-T-----CCEESCTHHHHTC-TTCCEEE
T ss_pred ccEEEECCCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEECCHHHhhhhcc-c-----CcccCCHHHHhcC-CCCCEEE
Confidence 4799999999999998877642 34444 78999988776632 1 2357899999875 3479999
Q ss_pred EecCCCchHHHHHHhhcccCCCCCEEEcCCCC-ChHHHHHHHHHHHHccccc-cccCCCCCc
Q psy9637 74 MLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNS-EYQDTDRRSKALEAKGLLY-VGCGVSGGE 133 (490)
Q Consensus 74 l~vp~~~~v~~vl~~l~~~l~~g~iiId~s~~-~~~~~~~~~~~l~~~gi~~-ld~~vsGg~ 133 (490)
.++|......+.+. ..|+.|+-|+-.... ......++.+..+++|+.| +.+.+.+|.
T Consensus 84 e~tp~~~~h~~~~~---~AL~aGKhVvtenkal~a~~~~eL~~~A~~~gv~l~~Ea~V~~gi 142 (444)
T 3mtj_A 84 ELIGGLEPARELVM---QAIANGKHVVTANKHLVAKYGNEIFAAAQAKGVMVTFEAAVAGGI 142 (444)
T ss_dssp ECCCSSTTHHHHHH---HHHHTTCEEEECCHHHHHHHHHHHHHHHHHHTCCEECGGGSSTTS
T ss_pred EcCCCchHHHHHHH---HHHHcCCEEEECCcccCHHHHHHHHHHHHHhCCeEEEEEeeeCCh
Confidence 99996334444433 345578877744321 0112234445556678776 455555443
|
| >2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00018 Score=71.55 Aligned_cols=99 Identities=12% Similarity=0.146 Sum_probs=65.9
Q ss_pred CcEEEEcccHHHHHHHHHHHHCC--CeEEEEeCChHHHHHHHHcccC------CCCeeccCCHHHHHhhCCCCcEEEEec
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHG--FTVVAYNRTTAKVDSFLANEAK------GTNIIGAHSLEELVKNLKKPRRVMMLV 76 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G--~~V~v~dr~~~~~~~l~~~g~~------~~~i~~~~s~~e~v~~l~~~dvIil~v 76 (490)
|||+|||+|.+|.+++..|+.++ .+|.++|+++++++.....-.. ..++.. .+ .+. ++.+|+||++.
T Consensus 1 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g~a~dl~~~~~~~~~~~v~~-~~-~~a---~~~aD~Vii~a 75 (310)
T 2xxj_A 1 MKVGIVGSGMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWVWA-GS-YGD---LEGARAVVLAA 75 (310)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHTTGGGSCCCEEEE-CC-GGG---GTTEEEEEECC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHHhHhhcCCeEEEE-CC-HHH---hCCCCEEEECC
Confidence 58999999999999999999887 5899999998877753321111 112332 33 333 44599999988
Q ss_pred CCCch---------------HHHHHHhhcccCCCCCEEEcCCCCChHHHH
Q psy9637 77 KAGSA---------------VDDFIDKLVPLLEKGDIIIDGGNSEYQDTD 111 (490)
Q Consensus 77 p~~~~---------------v~~vl~~l~~~l~~g~iiId~s~~~~~~~~ 111 (490)
+.+.. ++++.+.+.++ .|+.+||..|| |-+..
T Consensus 76 g~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~iiv~tN--Pv~~~ 122 (310)
T 2xxj_A 76 GVAQRPGETRLQLLDRNAQVFAQVVPRVLEA-APEAVLLVATN--PVDVM 122 (310)
T ss_dssp CCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEECSS--SHHHH
T ss_pred CCCCCCCcCHHHHHHhhHHHHHHHHHHHHHH-CCCcEEEEecC--chHHH
Confidence 65432 33444555555 57778888876 44443
|
| >4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=97.62 E-value=8.6e-05 Score=76.67 Aligned_cols=116 Identities=19% Similarity=0.180 Sum_probs=73.7
Q ss_pred CcEEEEcccHHHHHHHHHHHHCC---CeEEEEeCChHHHHHHHHcccC--CCCee----ccCC---HHHHHhhCCCCcEE
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHG---FTVVAYNRTTAKVDSFLANEAK--GTNII----GAHS---LEELVKNLKKPRRV 72 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G---~~V~v~dr~~~~~~~l~~~g~~--~~~i~----~~~s---~~e~v~~l~~~dvI 72 (490)
+||+|||+|.+|..++..|+++| ..|+++||++++.+.+.+.-.. +.++. -..+ ++++++.. ++|+|
T Consensus 2 ~kVlIiGaGgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~~l~~~-~~DvV 80 (405)
T 4ina_A 2 AKVLQIGAGGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKGYGEIDITTVDADSIEELVALINEV-KPQIV 80 (405)
T ss_dssp CEEEEECCSHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTTCCCCEEEECCTTCHHHHHHHHHHH-CCSEE
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhcCCceEEEEecCCCHHHHHHHHHhh-CCCEE
Confidence 68999999999999999999998 3899999999998887654210 00111 1123 33444331 27999
Q ss_pred EEecCCCchHHHHHHhhcccCCCCCEEEcCCCCChH--------HHHHHHHHHHHcccccc
Q psy9637 73 MMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQ--------DTDRRSKALEAKGLLYV 125 (490)
Q Consensus 73 il~vp~~~~v~~vl~~l~~~l~~g~iiId~s~~~~~--------~~~~~~~~l~~~gi~~l 125 (490)
|.+.|.. ....+++.. +..|..++|.++..+. ...+..+.+++.|+.++
T Consensus 81 in~ag~~-~~~~v~~a~---l~~g~~vvD~a~~~~~~~~~~~~~~~~~l~~~a~~aG~~~i 137 (405)
T 4ina_A 81 LNIALPY-QDLTIMEAC---LRTGVPYLDTANYEHPDLAKFEYKEQWAFHDRYKEKGVMAL 137 (405)
T ss_dssp EECSCGG-GHHHHHHHH---HHHTCCEEESSCCBCTTCSCBCSHHHHTTHHHHHHHTCEEE
T ss_pred EECCCcc-cChHHHHHH---HHhCCCEEEecCCCCcccchhhhHHHHHHHHHHHHhCCEEE
Confidence 9998864 333444433 3467778886553322 12244456666676543
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=97.61 E-value=9.3e-05 Score=75.19 Aligned_cols=98 Identities=13% Similarity=0.147 Sum_probs=68.5
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCe-eccCCHHHHHhhCCCCcEEEEecCCCchH-
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNI-IGAHSLEELVKNLKKPRRVMMLVKAGSAV- 82 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i-~~~~s~~e~v~~l~~~dvIil~vp~~~~v- 82 (490)
.+|.|+|.|.+|...+..+...|.+|+++||++++.+.+.+.+.. .+ ....+..++.+.+..+|+||.+++.+...
T Consensus 168 ~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~~r~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~DvVI~~~~~~~~~~ 245 (361)
T 1pjc_A 168 GKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGS--RVELLYSNSAEIETAVAEADLLIGAVLVPGRRA 245 (361)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGG--GSEEEECCHHHHHHHHHTCSEEEECCCCTTSSC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhhCc--eeEeeeCCHHHHHHHHcCCCEEEECCCcCCCCC
Confidence 589999999999999999999999999999999999888765532 11 01123333333333489999999764310
Q ss_pred HH-HHHhhcccCCCCCEEEcCCC
Q psy9637 83 DD-FIDKLVPLLEKGDIIIDGGN 104 (490)
Q Consensus 83 ~~-vl~~l~~~l~~g~iiId~s~ 104 (490)
.. +.+...+.++++.+|+|.+.
T Consensus 246 ~~li~~~~~~~~~~g~~ivdv~~ 268 (361)
T 1pjc_A 246 PILVPASLVEQMRTGSVIVDVAV 268 (361)
T ss_dssp CCCBCHHHHTTSCTTCEEEETTC
T ss_pred CeecCHHHHhhCCCCCEEEEEec
Confidence 00 11233456778899999875
|
| >3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00019 Score=71.50 Aligned_cols=114 Identities=12% Similarity=0.038 Sum_probs=76.6
Q ss_pred CCCcEEEEcc-cHHHHHHHHHHHHCCCeEE-EEeCChHHHHHHHHcccCCCCeeccCCHHHHHh--------hCCCCcEE
Q psy9637 3 AKGDIGLIGL-AVMGQNLILNMNDHGFTVV-AYNRTTAKVDSFLANEAKGTNIIGAHSLEELVK--------NLKKPRRV 72 (490)
Q Consensus 3 ~~~~IgiIGl-G~MG~~lA~~L~~~G~~V~-v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~--------~l~~~dvI 72 (490)
.|+||||||+ |.||...+..|.+.+.+++ ++|+++++. .+.+.. .....+++++++.+ .-+..|+|
T Consensus 2 ~mirvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~~-~~~~~~---~~~~~~~~~~~ll~~~~~l~~~~~~~vD~V 77 (318)
T 3oa2_A 2 HMKNFALIGAAGYIAPRHMRAIKDTGNCLVSAYDINDSVG-IIDSIS---PQSEFFTEFEFFLDHASNLKRDSATALDYV 77 (318)
T ss_dssp -CCEEEEETTTSSSHHHHHHHHHHTTCEEEEEECSSCCCG-GGGGTC---TTCEEESSHHHHHHHHHHHTTSTTTSCCEE
T ss_pred CceEEEEECCCcHHHHHHHHHHHhCCCEEEEEEcCCHHHH-HHHhhC---CCCcEECCHHHHHHhhhhhhhccCCCCcEE
Confidence 3679999999 7999999999999888755 789998752 222221 12346889999873 12458999
Q ss_pred EEecCCCchHHHHHHhhcccCCCCC-EEEcCC-CCChHHHHHHHHHHHHccccc
Q psy9637 73 MMLVKAGSAVDDFIDKLVPLLEKGD-IIIDGG-NSEYQDTDRRSKALEAKGLLY 124 (490)
Q Consensus 73 il~vp~~~~v~~vl~~l~~~l~~g~-iiId~s-~~~~~~~~~~~~~l~~~gi~~ 124 (490)
++++|+....+-+...+ +.|+ ++++-- .....+..++.+..+++|..+
T Consensus 78 ~I~tP~~~H~~~~~~al----~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~ 127 (318)
T 3oa2_A 78 SICSPNYLHYPHIAAGL----RLGCDVICEKPLVPTPEMLDQLAVIERETDKRL 127 (318)
T ss_dssp EECSCGGGHHHHHHHHH----HTTCEEEECSSCCSCHHHHHHHHHHHHHHTCCE
T ss_pred EECCCcHHHHHHHHHHH----HCCCeEEEECCCcCCHHHHHHHHHHHHHhCCEE
Confidence 99999975544443333 2344 555532 234577777777777777654
|
| >4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=97.58 E-value=0.0001 Score=71.89 Aligned_cols=107 Identities=17% Similarity=0.135 Sum_probs=68.1
Q ss_pred CCCCCcEEEEc-ccHHHHHHHHHHHHC-CCeEEE-EeCChHHHH--HHHH-cccCCCCeeccCCHHHHHhhCCCCcEEEE
Q psy9637 1 MAAKGDIGLIG-LAVMGQNLILNMNDH-GFTVVA-YNRTTAKVD--SFLA-NEAKGTNIIGAHSLEELVKNLKKPRRVMM 74 (490)
Q Consensus 1 M~~~~~IgiIG-lG~MG~~lA~~L~~~-G~~V~v-~dr~~~~~~--~l~~-~g~~~~~i~~~~s~~e~v~~l~~~dvIil 74 (490)
|+ |+||+|+| .|+||+.+++.+.+. +++++. +|++++... .+.+ .+. ...+..+++++++++. +|+||-
T Consensus 5 M~-mikV~V~Ga~G~MG~~i~~~l~~~~~~eLv~~~d~~~~~~~G~d~gel~g~-~~gv~v~~dl~~ll~~---~DVVID 79 (272)
T 4f3y_A 5 MS-SMKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGSPQLGQDAGAFLGK-QTGVALTDDIERVCAE---ADYLID 79 (272)
T ss_dssp -C-CEEEEESSTTSHHHHHHHHHHHHCTTEEEEEEBCCTTCTTTTSBTTTTTTC-CCSCBCBCCHHHHHHH---CSEEEE
T ss_pred cc-ccEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEEecCcccccccHHHHhCC-CCCceecCCHHHHhcC---CCEEEE
Confidence 53 57999999 899999999998865 677665 798753210 0000 011 1134567899998887 899998
Q ss_pred ecCCCchHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHH
Q psy9637 75 LVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKA 116 (490)
Q Consensus 75 ~vp~~~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~ 116 (490)
+.++. .+.+.+..+ ++.|.-+|-++|.......+..+.
T Consensus 80 fT~p~-a~~~~~~~a---l~~G~~vVigTTG~s~~~~~~L~~ 117 (272)
T 4f3y_A 80 FTLPE-GTLVHLDAA---LRHDVKLVIGTTGFSEPQKAQLRA 117 (272)
T ss_dssp CSCHH-HHHHHHHHH---HHHTCEEEECCCCCCHHHHHHHHH
T ss_pred cCCHH-HHHHHHHHH---HHcCCCEEEECCCCCHHHHHHHHH
Confidence 88653 455544443 446777777777764443333333
|
| >3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A* | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00022 Score=74.10 Aligned_cols=143 Identities=14% Similarity=0.171 Sum_probs=88.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHHC-CCeE-EEEeCChHHHHHHHHc--ccC-----------------CCCeeccCCHHHH
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDH-GFTV-VAYNRTTAKVDSFLAN--EAK-----------------GTNIIGAHSLEEL 62 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~-G~~V-~v~dr~~~~~~~l~~~--g~~-----------------~~~i~~~~s~~e~ 62 (490)
+.||||||+|.||..++..+.+. +.+| .++|+++++.+.+.+. +.. ...+..++|++++
T Consensus 23 ~IRVGIIGaG~iG~~~~~~l~~~~~veLvAV~D~~~era~~~a~~~yG~~~~~~~~~~~~~i~~a~~~g~~~v~~D~eeL 102 (446)
T 3upl_A 23 PIRIGLIGAGEMGTDIVTQVARMQGIEVGALSARRLPNTFKAIRTAYGDEENAREATTESAMTRAIEAGKIAVTDDNDLI 102 (446)
T ss_dssp CEEEEEECCSHHHHHHHHHHTTSSSEEEEEEECSSTHHHHHHHHHHHSSSTTEEECSSHHHHHHHHHTTCEEEESCHHHH
T ss_pred ceEEEEECChHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHhcCCccccccccchhhhhhhhccCCceEECCHHHH
Confidence 46899999999999999888754 5554 4789999998887653 300 0123467899999
Q ss_pred HhhCCCCcEEEEecCCCchHHHHHHhhcccCCCCCEEEcCCCCChHH---HHHHHHHHHHccccccccCCCCCccccccC
Q psy9637 63 VKNLKKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQD---TDRRSKALEAKGLLYVGCGVSGGEDGARYG 139 (490)
Q Consensus 63 v~~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~s~~~~~~---~~~~~~~l~~~gi~~ld~~vsGg~~~a~~G 139 (490)
++. +..|+|++++|+.....++ ....++.|+-|+-... +.+ ..++.+..+++|+.|.-+
T Consensus 103 L~d-~dIDaVviaTp~p~~H~e~---a~~AL~AGKHVv~~nk--~l~~~eg~eL~~~A~e~Gvvl~~~------------ 164 (446)
T 3upl_A 103 LSN-PLIDVIIDATGIPEVGAET---GIAAIRNGKHLVMMNV--EADVTIGPYLKAQADKQGVIYSLG------------ 164 (446)
T ss_dssp HTC-TTCCEEEECSCCHHHHHHH---HHHHHHTTCEEEECCH--HHHHHHHHHHHHHHHHHTCCEEEC------------
T ss_pred hcC-CCCCEEEEcCCChHHHHHH---HHHHHHcCCcEEecCc--ccCHHHHHHHHHHHHHhCCeeeec------------
Confidence 874 3479999999874222222 2334567887774422 221 223334555566544221
Q ss_pred CccCCCCC-cchHHHHHHHHHhhCCceeeCC
Q psy9637 140 PSLMPGGN-PAAWPALKPIFQKLNPSFETSA 169 (490)
Q Consensus 140 ~~im~GG~-~~a~~~v~~ll~~l~~~~~~~g 169 (490)
.|+ +...-.+-..-+.++-+++..|
T Consensus 165 -----~gdqp~~~~eLv~~a~~~G~~~v~~G 190 (446)
T 3upl_A 165 -----AGDEPSSCMELIEFVSALGYEVVSAG 190 (446)
T ss_dssp -----TTSHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred -----CCcchHHHHHHHHHHHhCCCeEEEec
Confidence 233 2334445566667777777654
|
| >3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural G joint center for structural genomics, JCSG; 2.20A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00038 Score=69.74 Aligned_cols=126 Identities=12% Similarity=0.174 Sum_probs=75.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHHC---------CCeEE-EEeCChHHHH------HHHHcccCCCCeeccC--CHHHHHhh
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDH---------GFTVV-AYNRTTAKVD------SFLANEAKGTNIIGAH--SLEELVKN 65 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~---------G~~V~-v~dr~~~~~~------~l~~~g~~~~~i~~~~--s~~e~v~~ 65 (490)
|+||||||+|.||..++..|.++ +.+|+ ++|+++.+.+ .+....... ..++ ++.++++.
T Consensus 2 mirvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~id~~~~~~~~~~~~---~~~~~~d~~~ll~~ 78 (327)
T 3do5_A 2 MIKIAIVGFGTVGQGVAELLIRKREEIEKAIGEFKVTAVADSKSSISGDFSLVEALRMKRETG---MLRDDAKAIEVVRS 78 (327)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTHHHHHHHHCCEEEEEEECSSCEEESSCCHHHHHHHHHHHS---SCSBCCCHHHHHHH
T ss_pred cEEEEEEeccHHHHHHHHHHHhhHHHHHhcCCCEEEEEEEeCChHhccccCHHHHHhhhccCc---cccCCCCHHHHhcC
Confidence 47999999999999999999875 45554 6788754321 111110000 1233 89999876
Q ss_pred CCCCcEEEEecCCCchHHHHHHhhcccCCCCCEEEcCCCCChH-HHHHHHHHHHHcccccc-ccCCCCCc
Q psy9637 66 LKKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQ-DTDRRSKALEAKGLLYV-GCGVSGGE 133 (490)
Q Consensus 66 l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~s~~~~~-~~~~~~~~l~~~gi~~l-d~~vsGg~ 133 (490)
+..|+|+.|+|+.....+..+.+...|+.|..|+-.+..... ...++.+..+++|..|+ .+-+.+|.
T Consensus 79 -~~iDvVv~~tp~~~h~~~a~~~~~~aL~aGkhVv~~NKkpla~~~~eL~~~A~~~g~~~~~ea~v~~g~ 147 (327)
T 3do5_A 79 -ADYDVLIEASVTRVDGGEGVNYIREALKRGKHVVTSNKGPLVAEFHGLMSLAERNGVRLMYEATVGGAM 147 (327)
T ss_dssp -SCCSEEEECCCCC----CHHHHHHHHHTTTCEEEECCSHHHHHHHHHHHHHHHHTTCCEECGGGSSTTS
T ss_pred -CCCCEEEECCCCcccchhHHHHHHHHHHCCCeEEecCchhhHHHHHHHHHHHHhhCCcEEEEEEeeecC
Confidence 348999999998633111334445567789888876542211 23334455566777543 55554443
|
| >4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00018 Score=72.06 Aligned_cols=107 Identities=9% Similarity=0.179 Sum_probs=72.7
Q ss_pred CCcEEEEcccHHHH-HHHHHHHHC-CCeEE-EEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCc
Q psy9637 4 KGDIGLIGLAVMGQ-NLILNMNDH-GFTVV-AYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGS 80 (490)
Q Consensus 4 ~~~IgiIGlG~MG~-~lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~ 80 (490)
++||||||+|.||. ..+..|.+. +++|+ ++|+++++ . ++..+++++++++..+..|+|++++|+..
T Consensus 25 ~~rvgiiG~G~ig~~~~~~~l~~~~~~~lvav~d~~~~~------~-----g~~~~~~~~~ll~~~~~vD~V~i~tp~~~ 93 (330)
T 4ew6_A 25 PINLAIVGVGKIVRDQHLPSIAKNANFKLVATASRHGTV------E-----GVNSYTTIEAMLDAEPSIDAVSLCMPPQY 93 (330)
T ss_dssp CEEEEEECCSHHHHHTHHHHHHHCTTEEEEEEECSSCCC------T-----TSEEESSHHHHHHHCTTCCEEEECSCHHH
T ss_pred CceEEEEecCHHHHHHHHHHHHhCCCeEEEEEEeCChhh------c-----CCCccCCHHHHHhCCCCCCEEEEeCCcHH
Confidence 35899999999998 688888875 66754 78998652 1 23468899999886456899999999854
Q ss_pred hHHHHHHhhcccCCCCC-EEEcCC-CCChHHHHHHHHHHHHcccccc
Q psy9637 81 AVDDFIDKLVPLLEKGD-IIIDGG-NSEYQDTDRRSKALEAKGLLYV 125 (490)
Q Consensus 81 ~v~~vl~~l~~~l~~g~-iiId~s-~~~~~~~~~~~~~l~~~gi~~l 125 (490)
..+ ++... |+.|+ ++++-- .....+..++.+.++++|+.+.
T Consensus 94 H~~-~~~~a---l~aGkhVl~EKP~a~~~~e~~~l~~~a~~~g~~~~ 136 (330)
T 4ew6_A 94 RYE-AAYKA---LVAGKHVFLEKPPGATLSEVADLEALANKQGASLF 136 (330)
T ss_dssp HHH-HHHHH---HHTTCEEEECSSSCSSHHHHHHHHHHHHHHTCCEE
T ss_pred HHH-HHHHH---HHcCCcEEEeCCCCCCHHHHHHHHHHHHhcCCeEE
Confidence 433 33322 33555 444431 2345667777777777776543
|
| >3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A* | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00027 Score=70.25 Aligned_cols=135 Identities=11% Similarity=-0.038 Sum_probs=86.9
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHHCCCeEE-EEeCChHHHHHHHHcccCCCCeeccCCHHHHHh-------hCCCCcEEEE
Q psy9637 4 KGDIGLIGL-AVMGQNLILNMNDHGFTVV-AYNRTTAKVDSFLANEAKGTNIIGAHSLEELVK-------NLKKPRRVMM 74 (490)
Q Consensus 4 ~~~IgiIGl-G~MG~~lA~~L~~~G~~V~-v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~-------~l~~~dvIil 74 (490)
|+||||||+ |.||...+..|.+.+.+|+ ++|+++++. .+.+.. .....+++++++.+ +-++.|+|++
T Consensus 3 mirvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~~-~~~~~~---~~~~~~~~~~~ll~~~~~l~~~~~~vD~V~I 78 (312)
T 3o9z_A 3 MTRFALTGLAGYIAPRHLKAIKEVGGVLVASLDPATNVG-LVDSFF---PEAEFFTEPEAFEAYLEDLRDRGEGVDYLSI 78 (312)
T ss_dssp CCEEEEECTTSSSHHHHHHHHHHTTCEEEEEECSSCCCG-GGGGTC---TTCEEESCHHHHHHHHHHHHHTTCCCSEEEE
T ss_pred ceEEEEECCChHHHHHHHHHHHhCCCEEEEEEcCCHHHH-HHHhhC---CCCceeCCHHHHHHHhhhhcccCCCCcEEEE
Confidence 579999999 7899999999999888755 789998763 222221 12356889999883 1246899999
Q ss_pred ecCCCchHHHHHHhhcccCCCCC-EEEcCC-CCChHHHHHHHHHHHHccccccccCCCCCccccccCCccCCCCCcchHH
Q psy9637 75 LVKAGSAVDDFIDKLVPLLEKGD-IIIDGG-NSEYQDTDRRSKALEAKGLLYVGCGVSGGEDGARYGPSLMPGGNPAAWP 152 (490)
Q Consensus 75 ~vp~~~~v~~vl~~l~~~l~~g~-iiId~s-~~~~~~~~~~~~~l~~~gi~~ld~~vsGg~~~a~~G~~im~GG~~~a~~ 152 (490)
|+|+....+-+... |+.|+ ++++-- .....+..++.+..+++|..+.-+... +. ...+.
T Consensus 79 ~tP~~~H~~~~~~a----l~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~v~~~~------R~---------~p~~~ 139 (312)
T 3o9z_A 79 ASPNHLHYPQIRMA----LRLGANALSEKPLVLWPEEIARLKELEARTGRRVYTVLQL------RV---------HPSLL 139 (312)
T ss_dssp CSCGGGHHHHHHHH----HHTTCEEEECSSSCSCHHHHHHHHHHHHHHCCCEEECCGG------GG---------CHHHH
T ss_pred CCCchhhHHHHHHH----HHCCCeEEEECCCCCCHHHHHHHHHHHHHcCCEEEEEeeh------hc---------CHHHH
Confidence 99997544433332 23454 455421 234567777777777777654322110 00 23567
Q ss_pred HHHHHHHhh
Q psy9637 153 ALKPIFQKL 161 (490)
Q Consensus 153 ~v~~ll~~l 161 (490)
.++.+++.-
T Consensus 140 ~~k~~i~~g 148 (312)
T 3o9z_A 140 ALKERLGQE 148 (312)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHHcC
Confidence 777777764
|
| >3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00022 Score=69.89 Aligned_cols=108 Identities=15% Similarity=0.068 Sum_probs=73.4
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchH-
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGF-TVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAV- 82 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v- 82 (490)
+++.|+|.|.+|.+++..|.+.|. +|+++||++++.+.+.+.-. ..+.+++.+ + .+|+||.++|.+-.-
T Consensus 123 k~vlvlGaGGaaraia~~L~~~G~~~v~v~nRt~~ka~~La~~~~-------~~~~~~l~~-l-~~DivInaTp~Gm~~~ 193 (282)
T 3fbt_A 123 NICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNPEKTSEIYGEFK-------VISYDELSN-L-KGDVIINCTPKGMYPK 193 (282)
T ss_dssp SEEEEECSSTTHHHHHHHHHHTTCSEEEEEESCHHHHHHHCTTSE-------EEEHHHHTT-C-CCSEEEECSSTTSTTS
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhcC-------cccHHHHHh-c-cCCEEEECCccCccCC
Confidence 579999999999999999999998 89999999999888764321 123444433 4 599999999986211
Q ss_pred -HHH-HHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccccc
Q psy9637 83 -DDF-IDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYV 125 (490)
Q Consensus 83 -~~v-l~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~l 125 (490)
+.. + -...++++.+|+|.--. |..|. ..+..+++|...+
T Consensus 194 ~~~~pi--~~~~l~~~~~v~DlvY~-P~~T~-ll~~A~~~G~~~~ 234 (282)
T 3fbt_A 194 EGESPV--DKEVVAKFSSAVDLIYN-PVETL-FLKYARESGVKAV 234 (282)
T ss_dssp TTCCSS--CHHHHTTCSEEEESCCS-SSSCH-HHHHHHHTTCEEE
T ss_pred CccCCC--CHHHcCCCCEEEEEeeC-CCCCH-HHHHHHHCcCeEe
Confidence 100 1 01235678999999753 33332 3344566675443
|
| >1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=97.52 E-value=8.6e-05 Score=72.93 Aligned_cols=113 Identities=14% Similarity=0.101 Sum_probs=73.9
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCC---C---CeeccCCHHHHHhhCCCCcEEEEecCC
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKG---T---NIIGAHSLEELVKNLKKPRRVMMLVKA 78 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~---~---~i~~~~s~~e~v~~l~~~dvIil~vp~ 78 (490)
+++.|+|.|.||.+++..|++.| +|+++||++++.+.+.+..... . .+.. .++ .+.+..+|+||.++|.
T Consensus 129 k~vlV~GaGgiG~aia~~L~~~G-~V~v~~r~~~~~~~l~~~~~~~~~~~~~~~~d~-~~~---~~~~~~~DilVn~ag~ 203 (287)
T 1nvt_A 129 KNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKF-SGL---DVDLDGVDIIINATPI 203 (287)
T ss_dssp CEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEE-ECT---TCCCTTCCEEEECSCT
T ss_pred CEEEEECchHHHHHHHHHHHHCC-CEEEEECCHHHHHHHHHHHhhhcccccceeEEE-eeH---HHhhCCCCEEEECCCC
Confidence 57999999999999999999999 9999999999888776432100 0 0111 121 2334558999999987
Q ss_pred CchH--HHH-HHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccccc
Q psy9637 79 GSAV--DDF-IDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYV 125 (490)
Q Consensus 79 ~~~v--~~v-l~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~l 125 (490)
+... +.. + .-...++++.+++|.+.. |..+ +..+..+++|..++
T Consensus 204 ~~~~~~~~~~~-~~~~~l~~~~~v~Dv~y~-p~~t-~ll~~a~~~G~~~~ 250 (287)
T 1nvt_A 204 GMYPNIDVEPI-VKAEKLREDMVVMDLIYN-PLET-VLLKEAKKVNAKTI 250 (287)
T ss_dssp TCTTCCSSCCS-SCSTTCCSSSEEEECCCS-SSSC-HHHHHHHTTTCEEE
T ss_pred CCCCCCCCCCC-CCHHHcCCCCEEEEeeeC-CccC-HHHHHHHHCCCEEe
Confidence 6421 100 1 012356789999999874 4444 24455566676543
|
| >1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00036 Score=69.50 Aligned_cols=101 Identities=13% Similarity=0.125 Sum_probs=66.4
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCC--CeEEEEeCChHHHH--HHHHcccCCCCeec---cCCHHHHHhhCCCCcEEEEec
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDHG--FTVVAYNRTTAKVD--SFLANEAKGTNIIG---AHSLEELVKNLKKPRRVMMLV 76 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~G--~~V~v~dr~~~~~~--~l~~~g~~~~~i~~---~~s~~e~v~~l~~~dvIil~v 76 (490)
|||+|||. |.+|.+++..|+..| ++|.++|+++.+.. .+.+ .....++.. +++++++++. +|+||++.
T Consensus 1 mKI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~~~~~a~dL~~-~~~~~~l~~~~~t~d~~~a~~~---aDvVvi~a 76 (314)
T 1mld_A 1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSH-IETRATVKGYLGPEQLPDCLKG---CDVVVIPA 76 (314)
T ss_dssp CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTT-SSSSCEEEEEESGGGHHHHHTT---CSEEEECC
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCccHHHHHHHhc-cCcCceEEEecCCCCHHHHhCC---CCEEEECC
Confidence 58999998 999999999999988 79999999873222 1211 111123433 2457766665 99999998
Q ss_pred CCCc---------------hHHHHHHhhcccCCCCCEEEcCCCCChHHHHH
Q psy9637 77 KAGS---------------AVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDR 112 (490)
Q Consensus 77 p~~~---------------~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~ 112 (490)
..+. .++++++.+.++. ++.+||..|| |-++.-
T Consensus 77 g~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~viv~sN--Pv~~~~ 124 (314)
T 1mld_A 77 GVPRKPGMTRDDLFNTNATIVATLTAACAQHC-PDAMICIISN--PVNSTI 124 (314)
T ss_dssp SCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEECSS--CHHHHH
T ss_pred CcCCCCCCcHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEECC--CcchhH
Confidence 5432 2445555565554 5667777766 455443
|
| >3ing_A Homoserine dehydrogenase; NP_394635.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: NDP; 1.95A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00016 Score=72.28 Aligned_cols=127 Identities=13% Similarity=0.052 Sum_probs=76.0
Q ss_pred CCcEEEEcccHHHHHHHHHHHHC-------CCeEE-EEeCChH---------HHHH-HHHcccCCCCeeccCCHHHHHhh
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDH-------GFTVV-AYNRTTA---------KVDS-FLANEAKGTNIIGAHSLEELVKN 65 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~-------G~~V~-v~dr~~~---------~~~~-l~~~g~~~~~i~~~~s~~e~v~~ 65 (490)
+.+|+|||+|.||..+++.|.++ +.+|+ +.|++++ +... ..+.+... .. .. +..+++.+
T Consensus 4 ~irVgIiG~G~VG~~~~~~L~~~~~~~~g~~l~lvaVad~~~~~~~~~idl~~~~~~~~~~g~~~-~~-~~-d~~e~l~~ 80 (325)
T 3ing_A 4 EIRIILMGTGNVGLNVLRIIDASNRRRSAFSIKVVGVSDSRSYASGRNLDISSIISNKEKTGRIS-DR-AF-SGPEDLMG 80 (325)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHHHHC--CEEEEEEEECSSBEEECSSCCHHHHHHHHHHHSCSC-SS-BC-CSGGGGTT
T ss_pred eEEEEEEcCcHHHHHHHHHHHhchhhccCCCEEEEEEEecChhhcccccCHHHHHHHhhhcCCCC-cc-cC-CHHHHhcC
Confidence 35899999999999999999874 34444 5677653 2221 12222110 00 12 66676654
Q ss_pred CCCCcEEEEecCCCchHHHHHHhhcccCCCCCEEEcCCCCCh-HHHHHHHHHHHHccccc-cccCCCCCcc
Q psy9637 66 LKKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEY-QDTDRRSKALEAKGLLY-VGCGVSGGED 134 (490)
Q Consensus 66 l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~s~~~~-~~~~~~~~~l~~~gi~~-ld~~vsGg~~ 134 (490)
+..|+|+.|+|+....+...+.....|+.|.-||....... ....++.+..+++|..| +++.+.+|.+
T Consensus 81 -~~iDvVVe~T~~~~~~~pa~~~~~~aL~aGkhVVtaNK~~la~~~~eL~~lA~~~g~~~~~Ea~vg~giP 150 (325)
T 3ing_A 81 -EAADLLVDCTPASRDGVREYSLYRMAFESGMNVVTANKSGLANKWHDIMDSANQNSKYIRYEATVAGGVP 150 (325)
T ss_dssp -SCCSEEEECCCCCSSSHHHHHHHHHHHHTTCEEEECCCHHHHHHHHHHHHHHHHHTCCEECGGGSSTTSC
T ss_pred -CCCCEEEECCCCccccchHHHHHHHHHHCCCeEEEcCchhHHHHHHHHHHHHHHcCCeEEEEeeecccCH
Confidence 35899999999853334444445556778998887755322 22334445556667754 4666655543
|
| >3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A* | Back alignment and structure |
|---|
Probab=97.50 E-value=0.0001 Score=73.49 Aligned_cols=117 Identities=13% Similarity=0.130 Sum_probs=75.2
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-eEEEEeCC---hHHHHHHHHcccC--CCC--eeccCCHHHHHhhCCCCcEEEEec
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGF-TVVAYNRT---TAKVDSFLANEAK--GTN--IIGAHSLEELVKNLKKPRRVMMLV 76 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~---~~~~~~l~~~g~~--~~~--i~~~~s~~e~v~~l~~~dvIil~v 76 (490)
+++.|+|.|.+|.+++..|++.|. +|+++||+ .++++++.+.-.. +.. +...++.+++.+.+..+|+||.++
T Consensus 155 k~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~la~~~~~~~~~~~~~~~~~~~~~l~~~l~~aDiIINaT 234 (315)
T 3tnl_A 155 KKMTICGAGGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSKTDCKAQLFDIEDHEQLRKEIAESVIFTNAT 234 (315)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCSEEEECS
T ss_pred CEEEEECCChHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHHHhhhhcCCceEEeccchHHHHHhhhcCCCEEEECc
Confidence 579999999999999999999998 89999999 8888877653211 111 122344444333333489999999
Q ss_pred CCCchHH--H-HHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccc
Q psy9637 77 KAGSAVD--D-FIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLY 124 (490)
Q Consensus 77 p~~~~v~--~-vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ 124 (490)
|.+-.-. . .+. ....++++.+|+|.--. |..|. ..+..+++|...
T Consensus 235 p~Gm~~~~~~~p~~-~~~~l~~~~~V~DlvY~-P~~T~-ll~~A~~~G~~~ 282 (315)
T 3tnl_A 235 GVGMKPFEGETLLP-SADMLRPELIVSDVVYK-PTKTR-LLEIAEEQGCQT 282 (315)
T ss_dssp STTSTTSTTCCSCC-CGGGCCTTCEEEESCCS-SSSCH-HHHHHHHTTCEE
T ss_pred cCCCCCCCCCCCCC-cHHHcCCCCEEEEeccC-CCCCH-HHHHHHHCCCeE
Confidence 9763211 0 000 12346788999999654 33332 334456667544
|
| >1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A* | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00054 Score=69.23 Aligned_cols=106 Identities=18% Similarity=0.245 Sum_probs=70.4
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH-cccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLA-NEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~-~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
++|+|+|+|++|...|+.|...|.+|+++|+++++ +++.+ .+. . ..+++++... .+|+++-|-......+
T Consensus 176 ktV~I~G~GnVG~~~A~~l~~~GakVvvsD~~~~~-~~~a~~~ga-----~-~v~~~ell~~--~~DIliP~A~~~~I~~ 246 (355)
T 1c1d_A 176 LTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTER-VAHAVALGH-----T-AVALEDVLST--PCDVFAPCAMGGVITT 246 (355)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHH-HHHHHHTTC-----E-ECCGGGGGGC--CCSEEEECSCSCCBCH
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCccH-HHHHHhcCC-----E-EeChHHhhcC--ccceecHhHHHhhcCH
Confidence 58999999999999999999999999999999876 33333 222 1 2255565541 3899875432222222
Q ss_pred HHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccccc
Q psy9637 84 DFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYV 125 (490)
Q Consensus 84 ~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~l 125 (490)
+.++ .+ +.++|+++.|....+ .+..+.+.++|+.++
T Consensus 247 ~~~~----~l-k~~iVie~AN~p~t~-~eA~~~L~~~gIlv~ 282 (355)
T 1c1d_A 247 EVAR----TL-DCSVVAGAANNVIAD-EAASDILHARGILYA 282 (355)
T ss_dssp HHHH----HC-CCSEECCSCTTCBCS-HHHHHHHHHTTCEEC
T ss_pred HHHh----hC-CCCEEEECCCCCCCC-HHHHHHHHhCCEEEE
Confidence 3333 33 368999999875432 223577788887664
|
| >3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A* | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00025 Score=74.33 Aligned_cols=90 Identities=10% Similarity=0.091 Sum_probs=70.2
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
++++|+|.|.+|..+|+.|+..|.+|+++|+++.+.+.....+.. ..+++++... +|+|+.+......+.
T Consensus 266 KtVvVtGaGgIG~aiA~~Laa~GA~Viv~D~~~~~a~~Aa~~g~d------v~~lee~~~~---aDvVi~atG~~~vl~- 335 (488)
T 3ond_A 266 KVAVVAGYGDVGKGCAAALKQAGARVIVTEIDPICALQATMEGLQ------VLTLEDVVSE---ADIFVTTTGNKDIIM- 335 (488)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCE------ECCGGGTTTT---CSEEEECSSCSCSBC-
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHhCCc------cCCHHHHHHh---cCEEEeCCCChhhhh-
Confidence 579999999999999999999999999999999887776665432 4567776665 899998776543332
Q ss_pred HHHhhcccCCCCCEEEcCCCCC
Q psy9637 85 FIDKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 85 vl~~l~~~l~~g~iiId~s~~~ 106 (490)
...+..++++.+|++.+...
T Consensus 336 --~e~l~~mk~gaiVvNaG~~~ 355 (488)
T 3ond_A 336 --LDHMKKMKNNAIVCNIGHFD 355 (488)
T ss_dssp --HHHHTTSCTTEEEEESSSTT
T ss_pred --HHHHHhcCCCeEEEEcCCCC
Confidence 22455678899999998753
|
| >1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00026 Score=70.85 Aligned_cols=96 Identities=15% Similarity=0.163 Sum_probs=61.9
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHHCC--CeEEEEeCChHHH--HHHHHcccCCCCeec---cCCHHHHHhhCCCCcEEEEe
Q psy9637 4 KGDIGLIG-LAVMGQNLILNMNDHG--FTVVAYNRTTAKV--DSFLANEAKGTNIIG---AHSLEELVKNLKKPRRVMML 75 (490)
Q Consensus 4 ~~~IgiIG-lG~MG~~lA~~L~~~G--~~V~v~dr~~~~~--~~l~~~g~~~~~i~~---~~s~~e~v~~l~~~dvIil~ 75 (490)
+|||+||| .|.+|..++..|+..| ++|.++|++++.. ..+..... ..++.. .+++.++++. +|+||++
T Consensus 8 ~mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~~~~~~dL~~~~~-~~~v~~~~~t~d~~~al~g---aDvVi~~ 83 (326)
T 1smk_A 8 GFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGVTADISHMDT-GAVVRGFLGQQQLEAALTG---MDLIIVP 83 (326)
T ss_dssp CEEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSHHHHHHHHHTSCS-SCEEEEEESHHHHHHHHTT---CSEEEEC
T ss_pred CCEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCcHhHHHHhhcccc-cceEEEEeCCCCHHHHcCC---CCEEEEc
Confidence 47999999 8999999999999999 8999999887622 12332111 112332 2244455544 9999999
Q ss_pred cCCCc---------------hHHHHHHhhcccCCCCCEEEcCCC
Q psy9637 76 VKAGS---------------AVDDFIDKLVPLLEKGDIIIDGGN 104 (490)
Q Consensus 76 vp~~~---------------~v~~vl~~l~~~l~~g~iiId~s~ 104 (490)
.+.+. .++++++.+.+.- +..+|+..||
T Consensus 84 ag~~~~~g~~r~dl~~~N~~~~~~i~~~i~~~~-p~~~viv~SN 126 (326)
T 1smk_A 84 AGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCC-PRAIVNLISN 126 (326)
T ss_dssp CCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHC-TTSEEEECCS
T ss_pred CCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEECC
Confidence 85432 2334445555443 5667777665
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00012 Score=72.60 Aligned_cols=103 Identities=14% Similarity=0.034 Sum_probs=70.4
Q ss_pred ceee--cC-CCCcchhHHhhhhHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhccCc--chhHHHHHHHHHhcccCC
Q psy9637 349 CDWV--GE-QGAGHFVKMVHNGIEYGDMQLICEAYHLMTGALGMSHDEMSAVFEDWNKGE--LDSFLIEITKDILKFKDT 423 (490)
Q Consensus 349 ~~~~--g~-~g~gh~vkmvhngiey~~m~~~~E~~~~~~~~~~~~~~~~~~~~~~w~~g~--~~s~l~~~~~~~~~~~~~ 423 (490)
+.|+ |+ .|+|+.+| .+.+++|++++|++.++++ .|++. ..+++.++.+. ..||+++.....+...|-
T Consensus 164 ~~~~~~g~~~g~g~~~k----~~~~~~~~~~~Ea~~la~~-~Gld~---~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 235 (306)
T 3l6d_A 164 TVFLPWDEALAFATVLH----AHAFAAMVTFFEAVGAGDR-FGLPV---SKTARLLLETSRFFVADALEEAVRRLETQDF 235 (306)
T ss_dssp EEECCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH-TTCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred EEEecCCCCccHHHHHH----HHHHHHHHHHHHHHHHHHH-cCCCH---HHHHHHHHHhhhhcccHHHHHHHHHHhcCCC
Confidence 4578 87 69999999 6778999999999999997 89955 44555555554 468877765543332231
Q ss_pred C-CCcchhhhccccCCCcchHHHHHHHHhcCCCchhhHHHHHH
Q psy9637 424 D-GAPLVEKIKDYAGQKGTGKWTAISALDYGVPVTLIGESVFS 465 (490)
Q Consensus 424 ~-~~~~l~~i~~~~~~~g~g~w~~~~a~~~~~p~~~i~~a~~~ 465 (490)
. +...++.... .-++.++.|.+.|+|+|++..+...
T Consensus 236 ~~~~~~~~~~~K------Dl~~~~~~a~~~g~~~p~~~~~~~~ 272 (306)
T 3l6d_A 236 KGDQARLDVHAD------AFAHIAQSLHAQGVWTPVFDAVCQV 272 (306)
T ss_dssp CTTSSBHHHHHH------HHHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred CCCcccHHHHHH------HHHHHHHHHHHcCCCchHHHHHHHH
Confidence 1 2122333322 2358899999999999987765443
|
| >1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1 | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00045 Score=67.94 Aligned_cols=113 Identities=16% Similarity=0.062 Sum_probs=75.0
Q ss_pred CCCcEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCch
Q psy9637 3 AKGDIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSA 81 (490)
Q Consensus 3 ~~~~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~ 81 (490)
..+||+|+|+ |+||..+++++.+.|+++ ++..+|.+.. +. -..+..+.|++|+.+.. .+|++++++|+. .
T Consensus 6 ~~~~VaVvGasG~~G~~~~~~l~~~g~~~-v~~VnP~~~g---~~---i~G~~vy~sl~el~~~~-~~Dv~Ii~vp~~-~ 76 (288)
T 1oi7_A 6 RETRVLVQGITGREGQFHTKQMLTYGTKI-VAGVTPGKGG---ME---VLGVPVYDTVKEAVAHH-EVDASIIFVPAP-A 76 (288)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHTCEE-EEEECTTCTT---CE---ETTEEEESSHHHHHHHS-CCSEEEECCCHH-H
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHcCCeE-EEEECCCCCC---ce---ECCEEeeCCHHHHhhcC-CCCEEEEecCHH-H
Confidence 3578999998 999999999999999994 4554443210 00 11245678999998721 289999999984 7
Q ss_pred HHHHHHhhcccCCCCCEEEcCCCCChHH-HHHHHHHHHHccccccc
Q psy9637 82 VDDFIDKLVPLLEKGDIIIDGGNSEYQD-TDRRSKALEAKGLLYVG 126 (490)
Q Consensus 82 v~~vl~~l~~~l~~g~iiId~s~~~~~~-~~~~~~~l~~~gi~~ld 126 (490)
+.++++++...= . ..+|-.++..+.. ..++.+.+++.|+.++.
T Consensus 77 ~~~~~~ea~~~G-i-~~vVi~t~G~~~~~~~~l~~~a~~~gi~vig 120 (288)
T 1oi7_A 77 AADAALEAAHAG-I-PLIVLITEGIPTLDMVRAVEEIKALGSRLIG 120 (288)
T ss_dssp HHHHHHHHHHTT-C-SEEEECCSCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHHCC-C-CEEEEECCCCCHHHHHHHHHHHHHcCCEEEe
Confidence 777777665531 1 2244455555543 34455666777887663
|
| >4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00016 Score=72.08 Aligned_cols=100 Identities=16% Similarity=0.157 Sum_probs=69.7
Q ss_pred ceeecC-CCCcchhHHhhhhHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhccCc-chhHHHHHHHHHhcccCC-CC
Q psy9637 349 CDWVGE-QGAGHFVKMVHNGIEYGDMQLICEAYHLMTGALGMSHDEMSAVFEDWNKGE-LDSFLIEITKDILKFKDT-DG 425 (490)
Q Consensus 349 ~~~~g~-~g~gh~vkmvhngiey~~m~~~~E~~~~~~~~~~~~~~~~~~~~~~w~~g~-~~s~l~~~~~~~~~~~~~-~~ 425 (490)
+.|+|+ .|+|+.+||++|.+.++++++++|++.++++ +|+ |. ++++.++.+. -.+| ......++.. +. .|
T Consensus 181 v~~~g~~~g~a~~~Kl~~N~~~~~~~~~~~E~~~la~~-~Gi---d~-~~~~~l~~~~~~~~~-~~~~~~~~~~-~~~~g 253 (317)
T 4ezb_A 181 LEAVGETPGQASSLKMIRSVMIKGVEALLIEALSSAER-AGV---TE-RILDSVQETFPGLDW-RDVADYYLSR-TFEHG 253 (317)
T ss_dssp EEEEESSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTC---HH-HHHHHHHHHSTTSCH-HHHHHHHHHH-HHHHH
T ss_pred eEEeCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCC---CH-HHHHHHHhcCccccH-HHhhhhhhcC-CCCCC
Confidence 568998 7999999999999999999999999999997 888 44 4777777644 2244 2233333331 10 11
Q ss_pred CcchhhhccccCCCcchHHHHHHHHhcCCCchhhHHHHHH
Q psy9637 426 APLVEKIKDYAGQKGTGKWTAISALDYGVPVTLIGESVFS 465 (490)
Q Consensus 426 ~~~l~~i~~~~~~~g~g~w~~~~a~~~~~p~~~i~~a~~~ 465 (490)
... .+ +-+-.++.|.++|+|+|+...+...
T Consensus 254 ~~~---~K-------Dl~~~~~~a~~~g~~~pl~~~~~~~ 283 (317)
T 4ezb_A 254 ARR---VT-------EMTEAAETIESFGLNAPMSRAACET 283 (317)
T ss_dssp HHH---HH-------HHHHHHHHHHTTTCCCHHHHHHHHH
T ss_pred cch---HH-------HHHHHHHHHHHcCCCChHHHHHHHH
Confidence 111 12 2346788899999999977766544
|
| >1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A* | Back alignment and structure |
|---|
Probab=97.41 E-value=0.0003 Score=69.26 Aligned_cols=110 Identities=13% Similarity=0.167 Sum_probs=74.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHH----CCCeEE-EEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCC
Q psy9637 4 KGDIGLIGLAVMGQNLILNMND----HGFTVV-AYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKA 78 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~----~G~~V~-v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~ 78 (490)
++||||||+|.||...+.+|.+ .+++++ ++|+++. .+. ..+. ..+++++++. +..|+|++++|+
T Consensus 7 ~~rvgiIG~G~iG~~~~~~l~~~~~~~~~~lvav~d~~~~-----a~~----~g~~-~~~~~ell~~-~~vD~V~i~tp~ 75 (294)
T 1lc0_A 7 KFGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRREL-----GSL----DEVR-QISLEDALRS-QEIDVAYICSES 75 (294)
T ss_dssp SEEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECSSCC-----CEE----TTEE-BCCHHHHHHC-SSEEEEEECSCG
T ss_pred cceEEEEEEcHHHHHHHHHHhccccCCCEEEEEEECchHH-----HHH----cCCC-CCCHHHHhcC-CCCCEEEEeCCc
Confidence 4689999999999999998864 356655 7888631 111 1122 5799999874 247999999999
Q ss_pred CchHHHHHHhhcccCCCCC-EEEcC-CCCChHHHHHHHHHHHHccccccccC
Q psy9637 79 GSAVDDFIDKLVPLLEKGD-IIIDG-GNSEYQDTDRRSKALEAKGLLYVGCG 128 (490)
Q Consensus 79 ~~~v~~vl~~l~~~l~~g~-iiId~-s~~~~~~~~~~~~~l~~~gi~~ld~~ 128 (490)
....+.+.. .|+.|+ ++++- -+....+..++.+..+++|+.+..+.
T Consensus 76 ~~H~~~~~~----al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~~~~ 123 (294)
T 1lc0_A 76 SSHEDYIRQ----FLQAGKHVLVEYPMTLSFAAAQELWELAAQKGRVLHEEH 123 (294)
T ss_dssp GGHHHHHHH----HHHTTCEEEEESCSCSCHHHHHHHHHHHHHTTCCEEEEC
T ss_pred HhHHHHHHH----HHHCCCcEEEeCCCCCCHHHHHHHHHHHHHhCCEEEEEE
Confidence 755444433 234566 66664 33456777777788888887655444
|
| >1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00014 Score=72.46 Aligned_cols=99 Identities=17% Similarity=0.102 Sum_probs=64.7
Q ss_pred CCCCCcEEEEcccHHHHHHHHHHHH--CCCeE-EEEeCChHH-HHHHHHc-ccCCCCeeccCCHHHHHhh--CCCCcEEE
Q psy9637 1 MAAKGDIGLIGLAVMGQNLILNMND--HGFTV-VAYNRTTAK-VDSFLAN-EAKGTNIIGAHSLEELVKN--LKKPRRVM 73 (490)
Q Consensus 1 M~~~~~IgiIGlG~MG~~lA~~L~~--~G~~V-~v~dr~~~~-~~~l~~~-g~~~~~i~~~~s~~e~v~~--l~~~dvIi 73 (490)
|+.++||||||+|.||..++..|.+ .+.++ .++|+++++ .+.+.+. +.. ...++.+++++. .+..|+|+
T Consensus 1 M~~~irVaIIG~G~iG~~~~~~l~~~~~~~elvav~d~~~~~~~~~~a~~~g~~----~~~~~~e~ll~~~~~~~iDvV~ 76 (312)
T 1nvm_B 1 MNQKLKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVT----TTYAGVEGLIKLPEFADIDFVF 76 (312)
T ss_dssp CCSCEEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCC----EESSHHHHHHHSGGGGGEEEEE
T ss_pred CCCCCEEEEEcCcHHHHHHHHHHHhhCcCeEEEEEEeCChhhhHHHHHHHcCCC----cccCCHHHHHhccCCCCCcEEE
Confidence 6556799999999999999999966 34554 468999876 4555433 221 124566777653 23479999
Q ss_pred EecCCCchHHHHHHhhcccCCCCCEEEcCCCC
Q psy9637 74 MLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNS 105 (490)
Q Consensus 74 l~vp~~~~v~~vl~~l~~~l~~g~iiId~s~~ 105 (490)
+++|.. ...+....++.. .+|..|++.+..
T Consensus 77 ~atp~~-~h~~~a~~al~a-~~Gk~Vi~ekp~ 106 (312)
T 1nvm_B 77 DATSAS-AHVQNEALLRQA-KPGIRLIDLTPA 106 (312)
T ss_dssp ECSCHH-HHHHHHHHHHHH-CTTCEEEECSTT
T ss_pred ECCChH-HHHHHHHHHHHh-CCCCEEEEcCcc
Confidence 999964 433443333221 238889887653
|
| >2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00075 Score=66.56 Aligned_cols=112 Identities=16% Similarity=0.091 Sum_probs=75.4
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchH
Q psy9637 4 KGDIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAV 82 (490)
Q Consensus 4 ~~~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v 82 (490)
..+|.|+|+ |+||..++++|.+.|++ .+|..+|.+... . -..+..+.|++++.+.. .+|++++++|+. .+
T Consensus 13 ~~~v~V~Gasg~~G~~~~~~l~~~g~~-~V~~VnP~~~g~---~---i~G~~vy~sl~el~~~~-~~Dv~ii~vp~~-~~ 83 (294)
T 2yv1_A 13 NTKAIVQGITGRQGSFHTKKMLECGTK-IVGGVTPGKGGQ---N---VHGVPVFDTVKEAVKET-DANASVIFVPAP-FA 83 (294)
T ss_dssp TCCEEEETTTSHHHHHHHHHHHHTTCC-EEEEECTTCTTC---E---ETTEEEESSHHHHHHHH-CCCEEEECCCHH-HH
T ss_pred CCEEEEECCCCCHHHHHHHHHHhCCCe-EEEEeCCCCCCc---e---ECCEeeeCCHHHHhhcC-CCCEEEEccCHH-HH
Confidence 457889998 99999999999999999 566666553200 0 01245688999998721 289999999995 77
Q ss_pred HHHHHhhcccCCCCCEEEcCCCCChHH-HHHHHHHHHHccccccc
Q psy9637 83 DDFIDKLVPLLEKGDIIIDGGNSEYQD-TDRRSKALEAKGLLYVG 126 (490)
Q Consensus 83 ~~vl~~l~~~l~~g~iiId~s~~~~~~-~~~~~~~l~~~gi~~ld 126 (490)
.++++++...= . ..+|-.++..+.. ..++.+.+++.|+.++.
T Consensus 84 ~~~v~ea~~~G-i-~~vVi~t~G~~~~~~~~l~~~A~~~gi~viG 126 (294)
T 2yv1_A 84 KDAVFEAIDAG-I-ELIVVITEHIPVHDTMEFVNYAEDVGVKIIG 126 (294)
T ss_dssp HHHHHHHHHTT-C-SEEEECCSCCCHHHHHHHHHHHHHHTCEEEC
T ss_pred HHHHHHHHHCC-C-CEEEEECCCCCHHHHHHHHHHHHHcCCEEEc
Confidence 77777665531 1 2244455555443 34555677777887663
|
| >3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00032 Score=68.85 Aligned_cols=101 Identities=23% Similarity=0.251 Sum_probs=70.9
Q ss_pred eeecCCCCcchhHHhhhhHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhccCcchhHHHHHHHH--HhcccCC-CCC
Q psy9637 350 DWVGEQGAGHFVKMVHNGIEYGDMQLICEAYHLMTGALGMSHDEMSAVFEDWNKGELDSFLIEITKD--ILKFKDT-DGA 426 (490)
Q Consensus 350 ~~~g~~g~gh~vkmvhngiey~~m~~~~E~~~~~~~~~~~~~~~~~~~~~~w~~g~~~s~l~~~~~~--~~~~~~~-~~~ 426 (490)
.++|+.|+|+.+|+++|.+.+.++++++|++.+++. .|++.+ .+.+....+...+|.+..... .++ .|- .|
T Consensus 162 ~~~~~~g~~~~~Kl~~N~~~~~~~~~~~Ea~~l~~~-~G~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~g- 235 (301)
T 3cky_A 162 YHVGDTGAGDAVKIVNNLLLGCNMASLAEALVLGVK-CGLKPE---TMQEIIGKSSGRSYAMEAKMEKFIMS-GDFAGG- 235 (301)
T ss_dssp EEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCCHH---HHHHHHHTSTTCBHHHHHHCCCCCCT-CCCSSS-
T ss_pred EEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHH---HHHHHHHcCCCCCHHHHHhhhhhhhc-CCCCCC-
Confidence 367889999999999999999999999999999987 888654 445555555566777654432 223 121 12
Q ss_pred cchhhhccccCCCcchHHHHHHHHhcCCCchhhHHH
Q psy9637 427 PLVEKIKDYAGQKGTGKWTAISALDYGVPVTLIGES 462 (490)
Q Consensus 427 ~~l~~i~~~~~~~g~g~w~~~~a~~~~~p~~~i~~a 462 (490)
..++.+.. .-.+.++.|.++|+|+|++...
T Consensus 236 ~~~~~~~k------d~~~~~~~a~~~gv~~p~~~~~ 265 (301)
T 3cky_A 236 FAMDLQHK------DLGLALEAGKEGNVPLPMTAMA 265 (301)
T ss_dssp SBHHHHHH------HHHHHHHHHHHHTCCCHHHHHH
T ss_pred ccHHHHHH------HHHHHHHHHHHhCCCChHHHHH
Confidence 12333221 1258899999999999987653
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00023 Score=74.78 Aligned_cols=80 Identities=10% Similarity=0.173 Sum_probs=58.3
Q ss_pred CCCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHc-ccCCCCeec-cCCHHHHHh-hCCCCcEEEEecCCC
Q psy9637 3 AKGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLAN-EAKGTNIIG-AHSLEELVK-NLKKPRRVMMLVKAG 79 (490)
Q Consensus 3 ~~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~-g~~~~~i~~-~~s~~e~v~-~l~~~dvIil~vp~~ 79 (490)
..|||-|+|+|++|..+|+.|.+.||+|++.|+++++++.+.+. +.. -+.. .++++-+.+ .++++|+++.+++++
T Consensus 2 ~~M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~~~~~~~~~~~~~~--~i~Gd~~~~~~L~~Agi~~ad~~ia~t~~D 79 (461)
T 4g65_A 2 NAMKIIILGAGQVGGTLAENLVGENNDITIVDKDGDRLRELQDKYDLR--VVNGHASHPDVLHEAGAQDADMLVAVTNTD 79 (461)
T ss_dssp CCEEEEEECCSHHHHHHHHHTCSTTEEEEEEESCHHHHHHHHHHSSCE--EEESCTTCHHHHHHHTTTTCSEEEECCSCH
T ss_pred CcCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhcCcE--EEEEcCCCHHHHHhcCCCcCCEEEEEcCCh
Confidence 35799999999999999999999999999999999999988754 221 1222 234443332 366799988777664
Q ss_pred chHHHH
Q psy9637 80 SAVDDF 85 (490)
Q Consensus 80 ~~v~~v 85 (490)
.+.-+
T Consensus 80 -e~Nl~ 84 (461)
T 4g65_A 80 -ETNMA 84 (461)
T ss_dssp -HHHHH
T ss_pred -HHHHH
Confidence 44433
|
| >3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00051 Score=66.66 Aligned_cols=73 Identities=14% Similarity=0.342 Sum_probs=59.5
Q ss_pred CcEEEEcccH-HHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 5 GDIGLIGLAV-MGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 5 ~~IgiIGlG~-MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
+++.|||.|. +|.++|..|.+.|.+|+++++. +.++++.+.. +|+||.+++.+..+.
T Consensus 151 k~vvVvG~s~iVG~plA~lL~~~gAtVtv~~~~-------------------t~~L~~~~~~---ADIVI~Avg~p~~I~ 208 (276)
T 3ngx_A 151 NTVTIVNRSPVVGRPLSMMLLNRNYTVSVCHSK-------------------TKDIGSMTRS---SKIVVVAVGRPGFLN 208 (276)
T ss_dssp CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT-------------------CSCHHHHHHH---SSEEEECSSCTTCBC
T ss_pred CEEEEEcCChHHHHHHHHHHHHCCCeEEEEeCC-------------------cccHHHhhcc---CCEEEECCCCCcccc
Confidence 5799999985 8999999999999999999863 3567788887 999999998753322
Q ss_pred HHHHhhcccCCCCCEEEcCCCC
Q psy9637 84 DFIDKLVPLLEKGDIIIDGGNS 105 (490)
Q Consensus 84 ~vl~~l~~~l~~g~iiId~s~~ 105 (490)
...+++|.+|||.+..
T Consensus 209 ------~~~vk~GavVIDvgi~ 224 (276)
T 3ngx_A 209 ------REMVTPGSVVIDVGIN 224 (276)
T ss_dssp ------GGGCCTTCEEEECCCE
T ss_pred ------HhhccCCcEEEEeccC
Confidence 1346899999999874
|
| >2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A* | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00077 Score=66.41 Aligned_cols=100 Identities=14% Similarity=0.113 Sum_probs=65.5
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC--eEEEEeCChHHHHH----HHHcc--c-CCCCeeccCCHHHHHhhCCCCcEEEEe
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGF--TVVAYNRTTAKVDS----FLANE--A-KGTNIIGAHSLEELVKNLKKPRRVMML 75 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~--~V~v~dr~~~~~~~----l~~~g--~-~~~~i~~~~s~~e~v~~l~~~dvIil~ 75 (490)
|||+|||+|.+|.++|..|+.++. ++.+||+++++++- +.... . ...++....++++ ++++|+|+++
T Consensus 1 MKV~IiGaG~VG~~~a~~l~~~~~~~el~L~Di~~~~~~G~a~DL~h~~~~~~~~~~i~~~~d~~~----~~~aDvVvit 76 (294)
T 2x0j_A 1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADYSL----LKGSEIIVVT 76 (294)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHGGGTCCCEEEEESCGGG----GTTCSEEEEC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCCCcchhhhhhhhcccccCCCCCeEecCCCHHH----hCCCCEEEEe
Confidence 689999999999999999998775 79999999876553 22110 1 1123444556654 3348999987
Q ss_pred cCCC----c-----------hHHHHHHhhcccCCCCCEEEcCCCCChHHHH
Q psy9637 76 VKAG----S-----------AVDDFIDKLVPLLEKGDIIIDGGNSEYQDTD 111 (490)
Q Consensus 76 vp~~----~-----------~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~ 111 (490)
--.+ . .++++.+.+.++ .|+.+|+-.|| |-++.
T Consensus 77 AG~prkpGmtR~dLl~~Na~I~~~i~~~i~~~-~p~aivlvvsN--Pvd~~ 124 (294)
T 2x0j_A 77 AGLARKPGMTRLDLAHKNAGIIKDIAKKIVEN-APESKILVVTN--PMDVM 124 (294)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHHHHHHHHTT-STTCEEEECSS--SHHHH
T ss_pred cCCCCCCCCchHHHHHHHHHHHHHHHHHHHhc-CCceEEEEecC--cchhh
Confidence 6322 1 233444566555 46778888887 44444
|
| >3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.0012 Score=66.03 Aligned_cols=114 Identities=16% Similarity=0.152 Sum_probs=68.4
Q ss_pred CCCcEEEEcccHHHHH-HHHHHHHCCCeEEEEeCCh--HHHHHHHHcccCCCCeeccCCHHHHH-hhCCCCcEEEEe--c
Q psy9637 3 AKGDIGLIGLAVMGQN-LILNMNDHGFTVVAYNRTT--AKVDSFLANEAKGTNIIGAHSLEELV-KNLKKPRRVMML--V 76 (490)
Q Consensus 3 ~~~~IgiIGlG~MG~~-lA~~L~~~G~~V~v~dr~~--~~~~~l~~~g~~~~~i~~~~s~~e~v-~~l~~~dvIil~--v 76 (490)
.+++|.|||+|.+|.+ +|+.|.+.|++|+++|+++ ...+.+.+.|.. +..-.+++++. .. +|+|+.+ +
T Consensus 3 ~~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~~~~~~~L~~~gi~---v~~g~~~~~l~~~~---~d~vV~Spgi 76 (326)
T 3eag_A 3 AMKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMYPPMSTQLEALGID---VYEGFDAAQLDEFK---ADVYVIGNVA 76 (326)
T ss_dssp CCCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHTTCE---EEESCCGGGGGSCC---CSEEEECTTC
T ss_pred CCcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCCcHHHHHHHhCCCE---EECCCCHHHcCCCC---CCEEEECCCc
Confidence 4678999999999995 9999999999999999864 355667666542 32223444443 23 8999876 4
Q ss_pred CCCch-HHHHHH---------hhc-ccCCCC-C-EEEcCCCCChHHHHHHHHHHHHccc
Q psy9637 77 KAGSA-VDDFID---------KLV-PLLEKG-D-IIIDGGNSEYQDTDRRSKALEAKGL 122 (490)
Q Consensus 77 p~~~~-v~~vl~---------~l~-~~l~~g-~-iiId~s~~~~~~~~~~~~~l~~~gi 122 (490)
|.+.+ +....+ +++ ..+.++ . |-|-+||+.-.++.-+...+...|.
T Consensus 77 ~~~~p~~~~a~~~gi~v~~~~e~~~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~g~ 135 (326)
T 3eag_A 77 KRGMDVVEAILNLGLPYISGPQWLSENVLHHHWVLGVAGTHGKTTTASMLAWVLEYAGL 135 (326)
T ss_dssp CTTCHHHHHHHHTTCCEEEHHHHHHHHTGGGSEEEEEESSSCHHHHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHcCCcEEeHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHHcCC
Confidence 44332 222221 122 222222 3 4555555553333333466666664
|
| >3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS protein structure initiative, midwest center for structural genomics; HET: MSE; 1.90A {Thermoplasma volcanium GSS1} PDB: 3jsa_A* | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00021 Score=71.73 Aligned_cols=125 Identities=15% Similarity=0.155 Sum_probs=72.7
Q ss_pred CcEEEEcccHHHHHHHHHHHHC------C--CeE-EEEeCChHHHHH------HHHcccCCCCe-eccC---CHHHHHhh
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDH------G--FTV-VAYNRTTAKVDS------FLANEAKGTNI-IGAH---SLEELVKN 65 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~------G--~~V-~v~dr~~~~~~~------l~~~g~~~~~i-~~~~---s~~e~v~~ 65 (490)
+||||||+|.||..++..|.++ | ++| .++|+++++.+. +.+.... ..+ ..++ ++++++ .
T Consensus 7 irvgIiG~G~VG~~~~~~l~~~~~~~~~g~~~~vvaV~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~~ll-~ 84 (331)
T 3c8m_A 7 INLSIFGLGNVGLNLLRIIRSFNEENRLGLKFNVVFVADSLHSYYNERIDIGKVISYKEK-GSLDSLEYESISASEAL-A 84 (331)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHCSSSEEEEEEEEECSSCEEECTTCCHHHHHHHHHT-TCGGGCCSEECCHHHHH-H
T ss_pred EeEEEEecCHHHHHHHHHHHhChHHHhcCCcEEEEEEEECChHHhhcccChHHHhhhhcc-CCcccccCCCCCHHHHh-C
Confidence 6899999999999999999764 2 455 467888754332 1111000 011 1244 899988 4
Q ss_pred CCCCcEEEEecCCCchHHHHHHhhcccCCCCCEEEcCCCCC-hHHHHHHHHHHHHccccc-cccCCCCC
Q psy9637 66 LKKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSE-YQDTDRRSKALEAKGLLY-VGCGVSGG 132 (490)
Q Consensus 66 l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~s~~~-~~~~~~~~~~l~~~gi~~-ld~~vsGg 132 (490)
+..|+|+.|+|+....+...+-....|+.|+-||-..... .....++.+..+++|+.| .++.+.+|
T Consensus 85 -~~iDvVv~~t~~~~~~~~~~~~~~~AL~aGkhVvtanK~pla~~~~eL~~~A~~~gv~~~~ea~vg~g 152 (331)
T 3c8m_A 85 -RDFDIVVDATPASADGKKELAFYKETFENGKDVVTANKSGLANFWPEIMEYARSNNRRIRYEATVAGG 152 (331)
T ss_dssp -SSCSEEEECSCCCSSSHHHHHHHHHHHHTTCEEEECCCHHHHHHHHHHHHHHHHHTCCEECGGGSSTT
T ss_pred -CCCCEEEECCCCCCccchHHHHHHHHHHCCCeEEecCchhhHHHHHHHHHHHHHcCCEEEEEeecccc
Confidence 3589999999984111112223334566788888654311 123334445556677654 34444444
|
| >2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A* | Back alignment and structure |
|---|
Probab=97.25 E-value=0.0008 Score=65.41 Aligned_cols=100 Identities=19% Similarity=0.069 Sum_probs=72.3
Q ss_pred eeecCCCCcchhHHhhhhHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhccCcchhHHHHHHHH--HhcccCC-CCC
Q psy9637 350 DWVGEQGAGHFVKMVHNGIEYGDMQLICEAYHLMTGALGMSHDEMSAVFEDWNKGELDSFLIEITKD--ILKFKDT-DGA 426 (490)
Q Consensus 350 ~~~g~~g~gh~vkmvhngiey~~m~~~~E~~~~~~~~~~~~~~~~~~~~~~w~~g~~~s~l~~~~~~--~~~~~~~-~~~ 426 (490)
.++++.+.++.+|+++|..-+.++++++|++.+++. .|++. ..+++....+...||+++.... .++. |- .|
T Consensus 153 ~~~~~~~~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~-~G~~~---~~~~~~~~~~~~~s~~~~~~~~~~~l~~-~~~~g- 226 (289)
T 2cvz_A 153 VHVGPVGAGHAVKAINNALLAVNLWAAGEGLLALVK-QGVSA---EKALEVINASSGRSNATENLIPQRVLTR-AFPKT- 226 (289)
T ss_dssp EEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCCH---HHHHHHHTTSTTCBHHHHHTHHHHTTTS-CCCCS-
T ss_pred EEcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCcCH---HHHHHHHHccCCCCHHHHHhccchhhcC-CCCCC-
Confidence 367888999999999999999999999999999997 88854 4556667666666777765433 4442 21 12
Q ss_pred cchhhhccccCCCcchHHHHHHHHhcCCCchhhHH
Q psy9637 427 PLVEKIKDYAGQKGTGKWTAISALDYGVPVTLIGE 461 (490)
Q Consensus 427 ~~l~~i~~~~~~~g~g~w~~~~a~~~~~p~~~i~~ 461 (490)
..++.+.. .-++.++.+.+.|+|+|++.+
T Consensus 227 ~~~~~~~k------d~~~~~~~a~~~gv~~p~~~~ 255 (289)
T 2cvz_A 227 FALGLLVK------DLGIAMGVLDGEKAPSPLLRL 255 (289)
T ss_dssp SBHHHHHH------HHHHHHHHHTTTCCCCHHHHH
T ss_pred cChHHHHH------HHHHHHHHHHHcCCCChHHHH
Confidence 12333221 124888999999999997665
|
| >1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A | Back alignment and structure |
|---|
Probab=97.25 E-value=0.0011 Score=66.39 Aligned_cols=101 Identities=7% Similarity=0.041 Sum_probs=64.8
Q ss_pred CCC-CCcEEEEcc-cHHHHHHHHHHHHCCC-------eEEEEeCC----hHHHHH----HHHcccC-CCCeeccCCHHHH
Q psy9637 1 MAA-KGDIGLIGL-AVMGQNLILNMNDHGF-------TVVAYNRT----TAKVDS----FLANEAK-GTNIIGAHSLEEL 62 (490)
Q Consensus 1 M~~-~~~IgiIGl-G~MG~~lA~~L~~~G~-------~V~v~dr~----~~~~~~----l~~~g~~-~~~i~~~~s~~e~ 62 (490)
|+. .|||.|+|. |.+|.+++..|+..|+ +|.++|++ +++++. +...... ..++...+++.+.
T Consensus 1 m~~~~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl~~~~~~~~~~i~~~~~~~~a 80 (329)
T 1b8p_A 1 MAKTPMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDDCAFPLLAGMTAHADPMTA 80 (329)
T ss_dssp --CCCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHHHHHHHHHHHTTTCTTEEEEEEESSHHHH
T ss_pred CCCCCCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCccccccchhhHHHHhhhcccccCcEEEecCcHHH
Confidence 543 479999997 9999999999999886 89999999 554443 2221100 1123444666666
Q ss_pred HhhCCCCcEEEEecCCCc----h-----------HHHHHHhhcccCCCCCEEEcCCC
Q psy9637 63 VKNLKKPRRVMMLVKAGS----A-----------VDDFIDKLVPLLEKGDIIIDGGN 104 (490)
Q Consensus 63 v~~l~~~dvIil~vp~~~----~-----------v~~vl~~l~~~l~~g~iiId~s~ 104 (490)
++. +|+||++...+. . ++++++.+..+-.++.+||..||
T Consensus 81 l~~---aD~Vi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~p~a~ii~~SN 134 (329)
T 1b8p_A 81 FKD---ADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAVASRNIKVLVVGN 134 (329)
T ss_dssp TTT---CSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred hCC---CCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEccC
Confidence 555 999998864321 1 23344555554336678888886
|
| >1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=97.24 E-value=0.001 Score=64.91 Aligned_cols=102 Identities=16% Similarity=0.163 Sum_probs=71.6
Q ss_pred eeecCCCCcchhHHhhhhHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhccCcchhHHHHH-HHHHhcccCC-CCCc
Q psy9637 350 DWVGEQGAGHFVKMVHNGIEYGDMQLICEAYHLMTGALGMSHDEMSAVFEDWNKGELDSFLIEI-TKDILKFKDT-DGAP 427 (490)
Q Consensus 350 ~~~g~~g~gh~vkmvhngiey~~m~~~~E~~~~~~~~~~~~~~~~~~~~~~w~~g~~~s~l~~~-~~~~~~~~~~-~~~~ 427 (490)
.++|+.|+|+.+|+++|..-+.+++++.|++.+++. .|++. ..+++.++.+...||.+.. ....+. ++. .|.
T Consensus 160 ~~~~~~~~~~~~Kl~~n~~~~~~~~~~~E~~~l~~~-~G~~~---~~~~~~~~~~~~~s~~~~~~~~~~~~-~~~~~g~- 233 (295)
T 1yb4_A 160 TLVGGNGDGQTCKVANQIIVALNIEAVSEALVFASK-AGADP---VRVRQALMGGFASSRILEVHGERMIN-RTFEPGF- 233 (295)
T ss_dssp EEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCCH---HHHHHHHTSSSSCBHHHHHHHHHHHT-TCCCCSS-
T ss_pred EEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCH---HHHHHHHHcCCCCCHHHHHhhHHHhc-CCCCCCC-
Confidence 467889999999999999999999999999999997 78854 5666677776666776553 333333 221 121
Q ss_pred chhhhccccCCCcchHHHHHHHHhcCCCchhhHHHH
Q psy9637 428 LVEKIKDYAGQKGTGKWTAISALDYGVPVTLIGESV 463 (490)
Q Consensus 428 ~l~~i~~~~~~~g~g~w~~~~a~~~~~p~~~i~~a~ 463 (490)
.++.+.. +-.+.++.+.+.|+|+|++.+..
T Consensus 234 ~~~~~~k------d~~~~~~~a~~~g~~~p~~~~~~ 263 (295)
T 1yb4_A 234 KIALHQK------DLNLALQSAKALALNLPNTATCQ 263 (295)
T ss_dssp BHHHHHH------HHHHHHHHHHHTTCCCHHHHHHH
T ss_pred chHHHHH------HHHHHHHHHHHcCCCChHHHHHH
Confidence 1221111 11468899999999999876543
|
| >2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00051 Score=68.97 Aligned_cols=91 Identities=11% Similarity=0.111 Sum_probs=61.0
Q ss_pred CCcEEEEcccHHHHHHHHHHHHC-CCeEE-EEeCChHHHHHHHHccc-C-------------CCCeeccCCHHHHHhhCC
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDH-GFTVV-AYNRTTAKVDSFLANEA-K-------------GTNIIGAHSLEELVKNLK 67 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~g~-~-------------~~~i~~~~s~~e~v~~l~ 67 (490)
|+||||+|+|.||..+++.|.++ +.+|+ +.|++++....+.+... . ...+....+++++...
T Consensus 2 ~irVgIiG~G~iG~~~~r~l~~~~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~v~~d~~~l~~~-- 79 (334)
T 2czc_A 2 KVKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLEK-- 79 (334)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHTT--
T ss_pred CcEEEEEeEhHHHHHHHHHHhcCCCCEEEEEEcCCHHHHHHHHHhcCccccccccccceeccCCceEEcCcHHHhccC--
Confidence 36999999999999999999876 34554 67888777766654321 1 0011345688888765
Q ss_pred CCcEEEEecCCCchHHHHHHhhcccCCCCCEEEc
Q psy9637 68 KPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIID 101 (490)
Q Consensus 68 ~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId 101 (490)
.|+|++|+|.+...+.. . .+++.|..||.
T Consensus 80 -vDvV~~aTp~~~h~~~a-~---~~l~aGk~Vi~ 108 (334)
T 2czc_A 80 -VDIIVDATPGGIGAKNK-P---LYEKAGVKAIF 108 (334)
T ss_dssp -CSEEEECCSTTHHHHHH-H---HHHHHTCEEEE
T ss_pred -CCEEEECCCccccHHHH-H---HHHHcCCceEe
Confidence 89999999997433333 2 23345666664
|
| >3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00054 Score=67.21 Aligned_cols=109 Identities=13% Similarity=0.130 Sum_probs=67.4
Q ss_pred CCCCCcEEEEc-ccHHHHHHHHHHHH-CCCeEE-EEeCChHH-H----HHHHHcccCCCCeeccCCHHHHHhhCCCCcEE
Q psy9637 1 MAAKGDIGLIG-LAVMGQNLILNMND-HGFTVV-AYNRTTAK-V----DSFLANEAKGTNIIGAHSLEELVKNLKKPRRV 72 (490)
Q Consensus 1 M~~~~~IgiIG-lG~MG~~lA~~L~~-~G~~V~-v~dr~~~~-~----~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvI 72 (490)
|..++||+|+| +|+||+.+++.+.+ .+++++ ++|++++. . ..+. |.....+..++++++++.. +|+|
T Consensus 18 m~~~irV~V~Ga~GrMGr~i~~~v~~~~~~eLvg~vd~~~~~~~G~d~gel~--G~~~~gv~v~~dl~~ll~~---aDVv 92 (288)
T 3ijp_A 18 GPGSMRLTVVGANGRMGRELITAIQRRKDVELCAVLVRKGSSFVDKDASILI--GSDFLGVRITDDPESAFSN---TEGI 92 (288)
T ss_dssp ---CEEEEESSTTSHHHHHHHHHHHTCSSEEEEEEBCCTTCTTTTSBGGGGT--TCSCCSCBCBSCHHHHTTS---CSEE
T ss_pred ccCCeEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccchHHhh--ccCcCCceeeCCHHHHhcC---CCEE
Confidence 44557999999 99999999999875 467765 56887431 1 1111 1112234567899988765 9999
Q ss_pred EEecCCCchHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHH
Q psy9637 73 MMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALE 118 (490)
Q Consensus 73 il~vp~~~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~ 118 (490)
|-..++. .+.+.+. ..++.|.-+|-++|.......+..+.+.
T Consensus 93 IDFT~p~-a~~~~~~---~~l~~Gv~vViGTTG~~~e~~~~L~~aa 134 (288)
T 3ijp_A 93 LDFSQPQ-ASVLYAN---YAAQKSLIHIIGTTGFSKTEEAQIADFA 134 (288)
T ss_dssp EECSCHH-HHHHHHH---HHHHHTCEEEECCCCCCHHHHHHHHHHH
T ss_pred EEcCCHH-HHHHHHH---HHHHcCCCEEEECCCCCHHHHHHHHHHh
Confidence 8776542 4443333 3445677788888876554443344433
|
| >3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00028 Score=70.69 Aligned_cols=114 Identities=9% Similarity=0.086 Sum_probs=72.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeEE-EEeCCh-HHHHHHHHcccC-CCCeeccCCHHHHHhhCCCCcEEEEecCCCc
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTVV-AYNRTT-AKVDSFLANEAK-GTNIIGAHSLEELVKNLKKPRRVMMLVKAGS 80 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V~-v~dr~~-~~~~~l~~~g~~-~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~ 80 (490)
++||||||+|.+|...+..| ..+.+|+ ++|+++ ++.+.+.+...+ +.....++|++++++. ++.|+|++++|+..
T Consensus 2 ~~rvgiiG~G~~~~~~~~~l-~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~-~~vD~V~I~tp~~~ 79 (337)
T 3ip3_A 2 SLKICVIGSSGHFRYALEGL-DEECSITGIAPGVPEEDLSKLEKAISEMNIKPKKYNNWWEMLEK-EKPDILVINTVFSL 79 (337)
T ss_dssp CEEEEEECSSSCHHHHHTTC-CTTEEEEEEECSSTTCCCHHHHHHHHTTTCCCEECSSHHHHHHH-HCCSEEEECSSHHH
T ss_pred ceEEEEEccchhHHHHHHhc-CCCcEEEEEecCCchhhHHHHHHHHHHcCCCCcccCCHHHHhcC-CCCCEEEEeCCcch
Confidence 46999999999998887777 6677766 689887 344433322100 1112468999999875 34799999999864
Q ss_pred hHHHHHHhhcccCCCCC-EEEcCC-CCChHHHHHHHHHHHHcccc
Q psy9637 81 AVDDFIDKLVPLLEKGD-IIIDGG-NSEYQDTDRRSKALEAKGLL 123 (490)
Q Consensus 81 ~v~~vl~~l~~~l~~g~-iiId~s-~~~~~~~~~~~~~l~~~gi~ 123 (490)
..+-++.. |+.|+ ++++-- .....+..++.+.+++.|..
T Consensus 80 H~~~~~~a----l~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~ 120 (337)
T 3ip3_A 80 NGKILLEA----LERKIHAFVEKPIATTFEDLEKIRSVYQKVRNE 120 (337)
T ss_dssp HHHHHHHH----HHTTCEEEECSSSCSSHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHH----HHCCCcEEEeCCCCCCHHHHHHHHHHHHHhCCc
Confidence 44433332 33454 455421 22346677777777777764
|
| >2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A* | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00055 Score=66.94 Aligned_cols=104 Identities=16% Similarity=0.092 Sum_probs=69.1
Q ss_pred eeecCCCCcchhHHhhhhHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhccCcchhHHHHHHH---HHhcc----cC
Q psy9637 350 DWVGEQGAGHFVKMVHNGIEYGDMQLICEAYHLMTGALGMSHDEMSAVFEDWNKGELDSFLIEITK---DILKF----KD 422 (490)
Q Consensus 350 ~~~g~~g~gh~vkmvhngiey~~m~~~~E~~~~~~~~~~~~~~~~~~~~~~w~~g~~~s~l~~~~~---~~~~~----~~ 422 (490)
.++|+.|+|+..|+++|.+.+.++.++.|++.+++. .|++.+ .+.+.++.+.-.||+++... ..++. .|
T Consensus 158 ~~~~~~g~~~~~kl~~n~~~~~~~~~~~Ea~~~~~~-~G~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~~~ 233 (296)
T 2gf2_A 158 VYCGAVGTGQAAKICNNMLLAISMIGTAEAMNLGIR-LGLDPK---LLAKILNMSSGRCWSSDTYNPVPGVMDGVPSANN 233 (296)
T ss_dssp EEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCCHH---HHHHHHHTSTTCBHHHHHSCSSTTTCSSSGGGGT
T ss_pred EEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHH---HHHHHHHhCcccCHHHHhcCCcccccccchhccC
Confidence 467889999999999999999999999999998887 888654 45555555555677766421 11110 01
Q ss_pred CCCCcchhhhccccCCCcchHHHHHHHHhcCCCchhhHHHH
Q psy9637 423 TDGAPLVEKIKDYAGQKGTGKWTAISALDYGVPVTLIGESV 463 (490)
Q Consensus 423 ~~~~~~l~~i~~~~~~~g~g~w~~~~a~~~~~p~~~i~~a~ 463 (490)
......++.+. .+-++.++.|.++|+|+|+...+.
T Consensus 234 ~~~g~~~~~~~------kd~~~~~~~a~~~gv~~p~~~~~~ 268 (296)
T 2gf2_A 234 YQGGFGTTLMA------KDLGLAQDSATSTKSPILLGSLAH 268 (296)
T ss_dssp TCSSSBHHHHH------HHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred CCCCCchHHHH------HHHHHHHHHHHHcCCCChHHHHHH
Confidence 00001111111 123588999999999999876644
|
| >2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.002 Score=63.58 Aligned_cols=113 Identities=17% Similarity=0.077 Sum_probs=74.8
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchH
Q psy9637 4 KGDIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAV 82 (490)
Q Consensus 4 ~~~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v 82 (490)
+.+|.|+|+ |+||..++++|.+.|++ .+|..+|.+... . -..+..+.|++++.+..+.+|++++++|+. .+
T Consensus 13 ~~~vvV~Gasg~~G~~~~~~l~~~g~~-~v~~VnP~~~g~---~---i~G~~vy~sl~el~~~~~~~DvaIi~vp~~-~~ 84 (297)
T 2yv2_A 13 ETRVLVQGITGREGSFHAKAMLEYGTK-VVAGVTPGKGGS---E---VHGVPVYDSVKEALAEHPEINTSIVFVPAP-FA 84 (297)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHHTCE-EEEEECTTCTTC---E---ETTEEEESSHHHHHHHCTTCCEEEECCCGG-GH
T ss_pred CCEEEEECCCCCHHHHHHHHHHhCCCc-EEEEeCCCCCCc---e---ECCEeeeCCHHHHhhcCCCCCEEEEecCHH-HH
Confidence 457888898 99999999999999998 556555543100 0 012456889999876322279999999995 77
Q ss_pred HHHHHhhcccCCCCCEEEcCCCCChHH-HHHHHHHHHHccccccc
Q psy9637 83 DDFIDKLVPLLEKGDIIIDGGNSEYQD-TDRRSKALEAKGLLYVG 126 (490)
Q Consensus 83 ~~vl~~l~~~l~~g~iiId~s~~~~~~-~~~~~~~l~~~gi~~ld 126 (490)
.++++++...= . ..+|-.++..+.. ..++.+.+++.|+.++.
T Consensus 85 ~~~v~ea~~~G-i-~~vVi~t~G~~~~~~~~l~~~A~~~gi~viG 127 (297)
T 2yv2_A 85 PDAVYEAVDAG-I-RLVVVITEGIPVHDTMRFVNYARQKGATIIG 127 (297)
T ss_dssp HHHHHHHHHTT-C-SEEEECCCCCCHHHHHHHHHHHHHHTCEEEC
T ss_pred HHHHHHHHHCC-C-CEEEEECCCCCHHHHHHHHHHHHHcCCEEEc
Confidence 77777666531 1 2244455555443 34555667777887663
|
| >2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A* | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00013 Score=68.60 Aligned_cols=79 Identities=23% Similarity=0.389 Sum_probs=51.4
Q ss_pred CCcEEEEcccHHHHHHHHH--HHHCCCeEE-EEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCc
Q psy9637 4 KGDIGLIGLAVMGQNLILN--MNDHGFTVV-AYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGS 80 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~--L~~~G~~V~-v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~ 80 (490)
.++|+|||+|.+|..++.. +...|++++ ++|.++++...... +.++...+++.++++. .|+|++++|+.
T Consensus 85 ~~rV~IIGAG~~G~~La~~~~~~~~g~~iVg~~D~dp~k~g~~i~----gv~V~~~~dl~eli~~---~D~ViIAvPs~- 156 (215)
T 2vt3_A 85 MTDVILIGVGNLGTAFLHYNFTKNNNTKISMAFDINESKIGTEVG----GVPVYNLDDLEQHVKD---ESVAILTVPAV- 156 (215)
T ss_dssp --CEEEECCSHHHHHHHHCC------CCEEEEEESCTTTTTCEET----TEEEEEGGGHHHHCSS---CCEEEECSCHH-
T ss_pred CCEEEEEccCHHHHHHHHHHhcccCCcEEEEEEeCCHHHHHhHhc----CCeeechhhHHHHHHh---CCEEEEecCch-
Confidence 3689999999999999994 445688766 67999886543221 1223445677777765 49999999984
Q ss_pred hHHHHHHhhc
Q psy9637 81 AVDDFIDKLV 90 (490)
Q Consensus 81 ~v~~vl~~l~ 90 (490)
...++++.+.
T Consensus 157 ~~~ei~~~l~ 166 (215)
T 2vt3_A 157 AAQSITDRLV 166 (215)
T ss_dssp HHHHHHHHHH
T ss_pred hHHHHHHHHH
Confidence 4456665554
|
| >4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00078 Score=66.18 Aligned_cols=73 Identities=14% Similarity=0.233 Sum_probs=57.2
Q ss_pred CcEEEEcccH-HHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHH--HHHhhCCCCcEEEEecCCCch
Q psy9637 5 GDIGLIGLAV-MGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLE--ELVKNLKKPRRVMMLVKAGSA 81 (490)
Q Consensus 5 ~~IgiIGlG~-MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~--e~v~~l~~~dvIil~vp~~~~ 81 (490)
+++.|||.|. +|.++|..|.+.|.+|+++++... +++ +.+.. +|+||.+++.+..
T Consensus 166 k~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~~T~-------------------~l~l~~~~~~---ADIVI~Avg~p~~ 223 (300)
T 4a26_A 166 KRAVVLGRSNIVGAPVAALLMKENATVTIVHSGTS-------------------TEDMIDYLRT---ADIVIAAMGQPGY 223 (300)
T ss_dssp CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTSC-------------------HHHHHHHHHT---CSEEEECSCCTTC
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCCC-------------------Cchhhhhhcc---CCEEEECCCCCCC
Confidence 5799999877 899999999999999999997322 333 55666 9999999997533
Q ss_pred HHHHHHhhcccCCCCCEEEcCCCC
Q psy9637 82 VDDFIDKLVPLLEKGDIIIDGGNS 105 (490)
Q Consensus 82 v~~vl~~l~~~l~~g~iiId~s~~ 105 (490)
+.. ..+++|.+|||.+..
T Consensus 224 I~~------~~vk~GavVIDvgi~ 241 (300)
T 4a26_A 224 VKG------EWIKEGAAVVDVGTT 241 (300)
T ss_dssp BCG------GGSCTTCEEEECCCE
T ss_pred CcH------HhcCCCcEEEEEecc
Confidence 211 346899999999864
|
| >3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A* | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00065 Score=67.53 Aligned_cols=115 Identities=14% Similarity=0.108 Sum_probs=74.6
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-eEEEEeCC---hHHHHHHHHcccC--CCCe--eccCCH---HHHHhhCCCCcEEE
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGF-TVVAYNRT---TAKVDSFLANEAK--GTNI--IGAHSL---EELVKNLKKPRRVM 73 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~---~~~~~~l~~~g~~--~~~i--~~~~s~---~e~v~~l~~~dvIi 73 (490)
+++.|+|.|.+|..++..|++.|. +|+++||+ .++++++.+.-.. +..+ ....+. .+.+.. +|+||
T Consensus 149 k~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt~~~~~~a~~la~~~~~~~~~~v~~~~~~~l~~~~~~l~~---~DiII 225 (312)
T 3t4e_A 149 KTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFAKRVNENTDCVVTVTDLADQHAFTEALAS---ADILT 225 (312)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTHHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHH---CSEEE
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCEEEEEECCCchHHHHHHHHHHhhhccCcceEEechHhhhhhHhhccC---ceEEE
Confidence 579999999999999999999998 89999999 8888877653211 1111 122343 344555 89999
Q ss_pred EecCCCchHHHHHHhh---cccCCCCCEEEcCCCCChHHHHHHHHHHHHcccccc
Q psy9637 74 MLVKAGSAVDDFIDKL---VPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYV 125 (490)
Q Consensus 74 l~vp~~~~v~~vl~~l---~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~l 125 (490)
-++|.+-.-..- ..+ ...+.++.+|+|.--. |..|. ..+..+++|...+
T Consensus 226 NaTp~Gm~~~~~-~~~~~~~~~l~~~~~v~D~vY~-P~~T~-ll~~A~~~G~~~~ 277 (312)
T 3t4e_A 226 NGTKVGMKPLEN-ESLIGDVSLLRPELLVTECVYN-PHMTK-LLQQAQQAGCKTI 277 (312)
T ss_dssp ECSSTTSTTSTT-CCSCCCGGGSCTTCEEEECCCS-SSSCH-HHHHHHHTTCEEE
T ss_pred ECCcCCCCCCCC-CcccCCHHHcCCCCEEEEeccC-CCCCH-HHHHHHHCCCeEE
Confidence 999987311100 011 1346788999998653 33332 3344556665443
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A* | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00077 Score=62.69 Aligned_cols=75 Identities=13% Similarity=0.221 Sum_probs=50.5
Q ss_pred CCCc-EEEEc-ccHHHHHHHHHHH-HCCCeEEEEeCChH-HHHHHHHcccCCCCee--ccCCHHHHHhhCCCCcEEEEec
Q psy9637 3 AKGD-IGLIG-LAVMGQNLILNMN-DHGFTVVAYNRTTA-KVDSFLANEAKGTNII--GAHSLEELVKNLKKPRRVMMLV 76 (490)
Q Consensus 3 ~~~~-IgiIG-lG~MG~~lA~~L~-~~G~~V~v~dr~~~-~~~~l~~~g~~~~~i~--~~~s~~e~v~~l~~~dvIil~v 76 (490)
+||| |.|.| .|.+|..+++.|+ +.|++|++.+|+++ +.+.+...+.. ..+. -..+.+++.+.++.+|+||.+.
T Consensus 3 ~mmk~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~D~~d~~~~~~~~~~~d~vv~~a 81 (221)
T 3r6d_A 3 AMYXYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEIIDHER-VTVIEGSFQNPGXLEQAVTNAEVVFVGA 81 (221)
T ss_dssp CSCSEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCHHHHTSTT-EEEEECCTTCHHHHHHHHTTCSEEEESC
T ss_pred ceEEEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccchhhccCCCc-eEEEECCCCCHHHHHHHHcCCCEEEEcC
Confidence 3456 99999 5999999999999 89999999999988 77666422211 0000 1234444444444578777776
Q ss_pred CC
Q psy9637 77 KA 78 (490)
Q Consensus 77 p~ 78 (490)
..
T Consensus 82 g~ 83 (221)
T 3r6d_A 82 ME 83 (221)
T ss_dssp CC
T ss_pred CC
Confidence 54
|
| >1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A* | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00012 Score=71.39 Aligned_cols=101 Identities=16% Similarity=0.142 Sum_probs=60.0
Q ss_pred CC-CCCcEEEEcc-cHHHHHHHHHHHH-CCCeEE-EEeCChHHHH--HHHHc-ccCCCCeeccCCHHHHHhhCCCCcEEE
Q psy9637 1 MA-AKGDIGLIGL-AVMGQNLILNMND-HGFTVV-AYNRTTAKVD--SFLAN-EAKGTNIIGAHSLEELVKNLKKPRRVM 73 (490)
Q Consensus 1 M~-~~~~IgiIGl-G~MG~~lA~~L~~-~G~~V~-v~dr~~~~~~--~l~~~-g~~~~~i~~~~s~~e~v~~l~~~dvIi 73 (490)
|. .+|||+|+|+ |+||..++..+.+ .|++|+ ++|+++++.. .+.+. +.....+...++++++++. +|+||
T Consensus 1 ~~~~~mkV~V~Ga~G~mG~~~~~~~~~~~~~elva~~d~~~~~~~g~d~~~~~g~~~~~v~~~~dl~~~l~~---~DvVI 77 (273)
T 1dih_A 1 MHDANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAVKDD---FDVFI 77 (273)
T ss_dssp -CCCBEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCEESCSTTTTTS---CSEEE
T ss_pred CCCCCcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCchhhhhhhHHHHcCCCcCCceecCCHHHHhcC---CCEEE
Confidence 55 3479999998 9999999998874 578877 7888764310 00000 1001123345667666654 89999
Q ss_pred EecCCCchHHHHHHhhcccCCCCCEEEcCCCCChH
Q psy9637 74 MLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQ 108 (490)
Q Consensus 74 l~vp~~~~v~~vl~~l~~~l~~g~iiId~s~~~~~ 108 (490)
-+.++ ..+.+.+... +..|.-+|-+++....
T Consensus 78 Dft~p-~~~~~~~~~a---~~~G~~vVigTtG~~~ 108 (273)
T 1dih_A 78 DFTRP-EGTLNHLAFC---RQHGKGMVIGTTGFDE 108 (273)
T ss_dssp ECSCH-HHHHHHHHHH---HHTTCEEEECCCCCCH
T ss_pred EcCCh-HHHHHHHHHH---HhCCCCEEEECCCCCH
Confidence 55443 2444444433 4466667776665543
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00057 Score=66.09 Aligned_cols=69 Identities=14% Similarity=0.202 Sum_probs=51.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCC
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKA 78 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~ 78 (490)
||+|.|.|.|.+|..++..|+++||+|++.+|++++.+.+...+.. + ...++.++ + ++.+|+||-+...
T Consensus 5 ~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~---~-~~~D~~d~-~-~~~~d~vi~~a~~ 73 (286)
T 3ius_A 5 TGTLLSFGHGYTARVLSRALAPQGWRIIGTSRNPDQMEAIRASGAE---P-LLWPGEEP-S-LDGVTHLLISTAP 73 (286)
T ss_dssp CCEEEEETCCHHHHHHHHHHGGGTCEEEEEESCGGGHHHHHHTTEE---E-EESSSSCC-C-CTTCCEEEECCCC
T ss_pred cCcEEEECCcHHHHHHHHHHHHCCCEEEEEEcChhhhhhHhhCCCe---E-EEeccccc-c-cCCCCEEEECCCc
Confidence 4789999999999999999999999999999999887776654322 1 11222221 1 4558888887754
|
| >3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00076 Score=66.94 Aligned_cols=99 Identities=12% Similarity=0.093 Sum_probs=66.6
Q ss_pred ceeecC-CCCcchhHHhhhhHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhccCcchhHHHHH-HHHHhcccCC-CC
Q psy9637 349 CDWVGE-QGAGHFVKMVHNGIEYGDMQLICEAYHLMTGALGMSHDEMSAVFEDWNKGELDSFLIEI-TKDILKFKDT-DG 425 (490)
Q Consensus 349 ~~~~g~-~g~gh~vkmvhngiey~~m~~~~E~~~~~~~~~~~~~~~~~~~~~~w~~g~~~s~l~~~-~~~~~~~~~~-~~ 425 (490)
+.|+|+ .|+|+.+||++|.+.++.|++++|++.+.++ +|+ |. ++++..+.+. .+|.++. ...++. .|. .|
T Consensus 179 ~~~~g~~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~-~Gl---d~-~~~~~l~~~~-~~~~~~~~~~~~~~-~~~~~g 251 (312)
T 3qsg_A 179 IEVLDGEVGGAALLKMCRSAVLKGLEALFLEALAAAEK-MGL---AD-RVLASLDASF-PEHHLRDLALYLVE-RNLEHA 251 (312)
T ss_dssp EEECCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TTC---HH-HHHHHHHHHS-GGGTHHHHHHHHHH-HHHHHH
T ss_pred eEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCC---CH-HHHHHHHhcC-CchhHHHhhhHhhc-CCCCcc
Confidence 457888 7999999999999999999999999999987 888 44 4666666543 3333222 222222 111 11
Q ss_pred CcchhhhccccCCCcchHHHHHHHHhcCCCchhhHHHHH
Q psy9637 426 APLVEKIKDYAGQKGTGKWTAISALDYGVPVTLIGESVF 464 (490)
Q Consensus 426 ~~~l~~i~~~~~~~g~g~w~~~~a~~~~~p~~~i~~a~~ 464 (490)
..+ .+ +-+-.++.|.+.|+|+|++..+..
T Consensus 252 ~~~---~K-------Dl~~~~~~a~~~g~~~pl~~~~~~ 280 (312)
T 3qsg_A 252 DRR---AH-------ELGEVAATLCSVGVEPLVAEAGYR 280 (312)
T ss_dssp HHH---HH-------HHHHHHHHHHHTTCCCHHHHHHHH
T ss_pred cch---HH-------HHHHHHHHHHHcCCCcHHHHHHHH
Confidence 121 11 224567788899999998776543
|
| >1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A* | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00015 Score=72.24 Aligned_cols=93 Identities=12% Similarity=0.078 Sum_probs=61.3
Q ss_pred CcEEEEcccHH-HHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCC-eec---c--CCHHHHHhhCCCCcEEEEecC
Q psy9637 5 GDIGLIGLAVM-GQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTN-IIG---A--HSLEELVKNLKKPRRVMMLVK 77 (490)
Q Consensus 5 ~~IgiIGlG~M-G~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~-i~~---~--~s~~e~v~~l~~~dvIil~vp 77 (490)
.++.|||.|.| |.++|..|...|.+|+++||+..+.....+....... ... + .++.+.+.. +|+||.+++
T Consensus 178 k~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~~~~l~~ra~~la~~~~~~t~~~~t~~~~L~e~l~~---ADIVIsAtg 254 (320)
T 1edz_A 178 KKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLD---SDVVITGVP 254 (320)
T ss_dssp CEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEESCCCSSCCCCEEEEEEECCHHHHHHHHHH---CSEEEECCC
T ss_pred CEEEEECCCcchHHHHHHHHHHCCCEEEEEeCchHHHHhHHHHHhhhcccccccccccHhHHHHHhcc---CCEEEECCC
Confidence 57999999976 9999999999999999999984322111111100000 000 1 356666666 999999998
Q ss_pred CCchHHHHHHhhcccCCCCCEEEcCCCC
Q psy9637 78 AGSAVDDFIDKLVPLLEKGDIIIDGGNS 105 (490)
Q Consensus 78 ~~~~v~~vl~~l~~~l~~g~iiId~s~~ 105 (490)
....+ +. ...+++|.+|||.+..
T Consensus 255 ~p~~v---I~--~e~vk~GavVIDVgi~ 277 (320)
T 1edz_A 255 SENYK---FP--TEYIKEGAVCINFACT 277 (320)
T ss_dssp CTTCC---BC--TTTSCTTEEEEECSSS
T ss_pred CCcce---eC--HHHcCCCeEEEEcCCC
Confidence 85320 10 1235789999999864
|
| >1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0029 Score=62.52 Aligned_cols=94 Identities=13% Similarity=0.085 Sum_probs=60.1
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCC--eEEEEeC--ChHHHHHHH----Hcc--cCCCCeeccCCHHHHHhhCCCCcEEE
Q psy9637 5 GDIGLIG-LAVMGQNLILNMNDHGF--TVVAYNR--TTAKVDSFL----ANE--AKGTNIIGAHSLEELVKNLKKPRRVM 73 (490)
Q Consensus 5 ~~IgiIG-lG~MG~~lA~~L~~~G~--~V~v~dr--~~~~~~~l~----~~g--~~~~~i~~~~s~~e~v~~l~~~dvIi 73 (490)
|||+|+| .|.+|.+++..|+..|+ ++.++|+ ++++++... ... ....++.. .+ .+. ++.+|+||
T Consensus 1 mKI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~v~~-~~-~~a---~~~aDvVi 75 (303)
T 1o6z_A 1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQ-GG-YED---TAGSDVVV 75 (303)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEE-CC-GGG---GTTCSEEE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEcCCCChhhHHHHHHHHHHHHhhCCCcEEEe-CC-HHH---hCCCCEEE
Confidence 5899999 99999999999998886 7889999 876654322 110 01112222 23 333 44599999
Q ss_pred EecCCCc---------------hHHHHHHhhcccCCCCCEEEcCCC
Q psy9637 74 MLVKAGS---------------AVDDFIDKLVPLLEKGDIIIDGGN 104 (490)
Q Consensus 74 l~vp~~~---------------~v~~vl~~l~~~l~~g~iiId~s~ 104 (490)
++...+. .++++++.+..+ .++.+|+..||
T Consensus 76 ~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~-~p~~~viv~SN 120 (303)
T 1o6z_A 76 ITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEH-NDDYISLTTSN 120 (303)
T ss_dssp ECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTT-CSCCEEEECCS
T ss_pred EcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCcEEEEeCC
Confidence 9985432 233444555544 56777777766
|
| >3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0017 Score=63.26 Aligned_cols=73 Identities=15% Similarity=0.244 Sum_probs=58.1
Q ss_pred CcEEEEcccH-HHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 5 GDIGLIGLAV-MGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 5 ~~IgiIGlG~-MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
+++.|||.|. +|.++|..|...|.+|++.++. +.++++.+.. +|+||.+++.+..+.
T Consensus 162 k~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~-------------------t~~L~~~~~~---ADIVI~Avg~p~~I~ 219 (285)
T 3l07_A 162 AYAVVVGASNVVGKPVSQLLLNAKATVTTCHRF-------------------TTDLKSHTTK---ADILIVAVGKPNFIT 219 (285)
T ss_dssp CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT-------------------CSSHHHHHTT---CSEEEECCCCTTCBC
T ss_pred CEEEEECCCchhHHHHHHHHHHCCCeEEEEeCC-------------------chhHHHhccc---CCEEEECCCCCCCCC
Confidence 5799999987 7999999999999999999864 2456666666 999999998753321
Q ss_pred HHHHhhcccCCCCCEEEcCCCC
Q psy9637 84 DFIDKLVPLLEKGDIIIDGGNS 105 (490)
Q Consensus 84 ~vl~~l~~~l~~g~iiId~s~~ 105 (490)
...+++|.+|||.+..
T Consensus 220 ------~~~vk~GavVIDvgi~ 235 (285)
T 3l07_A 220 ------ADMVKEGAVVIDVGIN 235 (285)
T ss_dssp ------GGGSCTTCEEEECCCE
T ss_pred ------HHHcCCCcEEEEeccc
Confidence 1346899999999863
|
| >1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A* | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0021 Score=65.35 Aligned_cols=96 Identities=16% Similarity=0.153 Sum_probs=69.1
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-eEEEEeCC----hHHH--------HHHHHcccCCCCeeccCCHHHHHhhCCCCcE
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGF-TVVAYNRT----TAKV--------DSFLANEAKGTNIIGAHSLEELVKNLKKPRR 71 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~----~~~~--------~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dv 71 (490)
.||.|+|.|.+|.++|+.|...|. +|+++||+ .++. +.+.+.-. ......++.|++.. +|+
T Consensus 193 ~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~Gli~~~R~~~~L~~~k~~~A~~~~---~~~~~~~L~eav~~---ADV 266 (388)
T 1vl6_A 193 VKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNENDPETCLNEYHLEIARITN---PERLSGDLETALEG---ADF 266 (388)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTSGGGCSSHHHHHHHHTSC---TTCCCSCHHHHHTT---CSE
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCcccCCCcccccCHHHHHHHHhhh---ccCchhhHHHHHcc---CCE
Confidence 589999999999999999999998 89999998 5442 23333211 11125678888877 899
Q ss_pred EEEecCCCchHHHHHHhhcccCCCCCEEEcCCCCChHHH
Q psy9637 72 VMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDT 110 (490)
Q Consensus 72 Iil~vp~~~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~ 110 (490)
+|-+..++..++++++. +.++.+|++++|-.|+-+
T Consensus 267 lIG~Sap~l~t~emVk~----Ma~~pIIfalSNPt~E~~ 301 (388)
T 1vl6_A 267 FIGVSRGNILKPEWIKK----MSRKPVIFALANPVPEID 301 (388)
T ss_dssp EEECSCSSCSCHHHHTT----SCSSCEEEECCSSSCSSC
T ss_pred EEEeCCCCccCHHHHHh----cCCCCEEEEcCCCCCCCC
Confidence 99887655445566555 446779999999665433
|
| >1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A* | Back alignment and structure |
|---|
Probab=96.93 E-value=0.00068 Score=65.12 Aligned_cols=82 Identities=16% Similarity=0.186 Sum_probs=58.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeEE-EEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchH
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTVV-AYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAV 82 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V~-v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v 82 (490)
.|||+++|+|.||..+++. . ++++. +|+ ++..++ .+..+++++++++. +|+|+-|-+. .++
T Consensus 12 ~~rV~i~G~GaIG~~v~~~--~-~leLv~v~~---~k~gel--------gv~a~~d~d~lla~---pD~VVe~A~~-~av 73 (253)
T 1j5p_A 12 HMTVLIIGMGNIGKKLVEL--G-NFEKIYAYD---RISKDI--------PGVVRLDEFQVPSD---VSTVVECASP-EAV 73 (253)
T ss_dssp CCEEEEECCSHHHHHHHHH--S-CCSEEEEEC---SSCCCC--------SSSEECSSCCCCTT---CCEEEECSCH-HHH
T ss_pred cceEEEECcCHHHHHHHhc--C-CcEEEEEEe---cccccc--------CceeeCCHHHHhhC---CCEEEECCCH-HHH
Confidence 4899999999999999988 4 88764 677 332211 23357788888754 9999999755 355
Q ss_pred HHHHHhhcccCCCCCEEEcCCCCC
Q psy9637 83 DDFIDKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 83 ~~vl~~l~~~l~~g~iiId~s~~~ 106 (490)
++. +.+.|+.|.-+|-.|...
T Consensus 74 ~e~---~~~iL~aG~dvv~~S~ga 94 (253)
T 1j5p_A 74 KEY---SLQILKNPVNYIIISTSA 94 (253)
T ss_dssp HHH---HHHHTTSSSEEEECCGGG
T ss_pred HHH---HHHHHHCCCCEEEcChhh
Confidence 543 445577888888887653
|
| >2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A* | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0029 Score=62.59 Aligned_cols=111 Identities=12% Similarity=0.044 Sum_probs=75.0
Q ss_pred CcEEEE-cc-cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchH
Q psy9637 5 GDIGLI-GL-AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAV 82 (490)
Q Consensus 5 ~~IgiI-Gl-G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v 82 (490)
.+|+|| |. |++|...+++|.+.|++ .+|+.||.+.. +. -..+..+.|++|+.+.. .+|++++++|+. .+
T Consensus 14 ~siaVV~Gasg~~G~~~~~~l~~~G~~-~v~~VnP~~~g---~~---i~G~~vy~sl~el~~~~-~vD~avI~vP~~-~~ 84 (305)
T 2fp4_A 14 NTKVICQGFTGKQGTFHSQQALEYGTN-LVGGTTPGKGG---KT---HLGLPVFNTVKEAKEQT-GATASVIYVPPP-FA 84 (305)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHHTCE-EEEEECTTCTT---CE---ETTEEEESSHHHHHHHH-CCCEEEECCCHH-HH
T ss_pred CcEEEEECCCCCHHHHHHHHHHHCCCc-EEEEeCCCcCc---ce---ECCeeeechHHHhhhcC-CCCEEEEecCHH-HH
Confidence 568899 98 99999999999999999 55666664311 00 01244678999998721 289999999994 77
Q ss_pred HHHHHhhcccCCCCCEEEcCCCCChH-HHHHHHHHHHHc-cccccc
Q psy9637 83 DDFIDKLVPLLEKGDIIIDGGNSEYQ-DTDRRSKALEAK-GLLYVG 126 (490)
Q Consensus 83 ~~vl~~l~~~l~~g~iiId~s~~~~~-~~~~~~~~l~~~-gi~~ld 126 (490)
.++++++...= - ..++..+...+. +..+..+.+++. |+.++.
T Consensus 85 ~~~~~e~i~~G-i-~~iv~~t~G~~~~~~~~l~~~a~~~~gi~liG 128 (305)
T 2fp4_A 85 AAAINEAIDAE-V-PLVVCITEGIPQQDMVRVKHRLLRQGKTRLIG 128 (305)
T ss_dssp HHHHHHHHHTT-C-SEEEECCCCCCHHHHHHHHHHHTTCSSCEEEC
T ss_pred HHHHHHHHHCC-C-CEEEEECCCCChHHHHHHHHHHHhcCCcEEEe
Confidence 77777665531 2 333445544433 344566777778 888763
|
| >1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0019 Score=64.44 Aligned_cols=95 Identities=14% Similarity=0.187 Sum_probs=65.1
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeec-cCCHHHHHh-hCCCCcEEEEecCCCchH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIG-AHSLEELVK-NLKKPRRVMMLVKAGSAV 82 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~-~~s~~e~v~-~l~~~dvIil~vp~~~~v 82 (490)
++|-|+|.|..|..+++.|.+.|+ |++.|+++++++ +.+.+.. -+.. .++++.+.+ .++++|.++++++++...
T Consensus 116 ~~viI~G~G~~g~~l~~~L~~~g~-v~vid~~~~~~~-~~~~~~~--~i~gd~~~~~~L~~a~i~~a~~vi~~~~~d~~n 191 (336)
T 1lnq_A 116 RHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKK-VLRSGAN--FVHGDPTRVSDLEKANVRGARAVIVDLESDSET 191 (336)
T ss_dssp CEEEEESCCHHHHHHHTTGGGSCE-EEEESCGGGHHH-HHHTTCE--EEESCTTSHHHHHHTCSTTEEEEEECCSSHHHH
T ss_pred CCEEEECCcHHHHHHHHHHHhCCc-EEEEeCChhhhh-HHhCCcE--EEEeCCCCHHHHHhcChhhccEEEEcCCccHHH
Confidence 479999999999999999999999 999999999998 7654332 0111 344554443 367799999999875322
Q ss_pred HHHHHhhcccCCCC-CEEEcCCC
Q psy9637 83 DDFIDKLVPLLEKG-DIIIDGGN 104 (490)
Q Consensus 83 ~~vl~~l~~~l~~g-~iiId~s~ 104 (490)
-.+ -..+..+.+. .++.-..+
T Consensus 192 ~~~-~~~ar~~~~~~~iiar~~~ 213 (336)
T 1lnq_A 192 IHC-ILGIRKIDESVRIIAEAER 213 (336)
T ss_dssp HHH-HHHHHTTCTTSEEEEECSS
T ss_pred HHH-HHHHHHHCCCCeEEEEECC
Confidence 222 3333445555 56665544
|
| >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0026 Score=62.16 Aligned_cols=78 Identities=21% Similarity=0.295 Sum_probs=52.0
Q ss_pred CCCCCcEEEEc-ccHHHHHHHHHHHHCCCeEEEEeCC-----hHHHHHHHHcccCCCCee--ccCCHHHHHhhCCCCcEE
Q psy9637 1 MAAKGDIGLIG-LAVMGQNLILNMNDHGFTVVAYNRT-----TAKVDSFLANEAKGTNII--GAHSLEELVKNLKKPRRV 72 (490)
Q Consensus 1 M~~~~~IgiIG-lG~MG~~lA~~L~~~G~~V~v~dr~-----~~~~~~l~~~g~~~~~i~--~~~s~~e~v~~l~~~dvI 72 (490)
|+.+|+|.|+| .|.+|..++..|++.|++|++.+|+ +++.+.+......+..+. -..+++++.+.++.+|+|
T Consensus 1 M~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~l~~~~~~~d~v 80 (313)
T 1qyd_A 1 MDKKSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVDVV 80 (313)
T ss_dssp -CCCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCSEE
T ss_pred CCCCCEEEEEcCCcHHHHHHHHHHHhCCCcEEEEECCCcccchhHHHHHHHHHhCCeEEEeCCCCCHHHHHHHHhCCCEE
Confidence 76568999999 5999999999999999999999998 455544322100010111 123555555555668888
Q ss_pred EEecCC
Q psy9637 73 MMLVKA 78 (490)
Q Consensus 73 il~vp~ 78 (490)
|.+...
T Consensus 81 i~~a~~ 86 (313)
T 1qyd_A 81 ISALAG 86 (313)
T ss_dssp EECCCC
T ss_pred EECCcc
Confidence 887754
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0021 Score=62.72 Aligned_cols=78 Identities=24% Similarity=0.318 Sum_probs=49.4
Q ss_pred CCCCCcEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCC------hHHHHHHHHcccCCCCeec--cCCHHHHHhhCCCCcE
Q psy9637 1 MAAKGDIGLIGL-AVMGQNLILNMNDHGFTVVAYNRT------TAKVDSFLANEAKGTNIIG--AHSLEELVKNLKKPRR 71 (490)
Q Consensus 1 M~~~~~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~------~~~~~~l~~~g~~~~~i~~--~~s~~e~v~~l~~~dv 71 (490)
|+.+++|.|+|. |.+|..++..|++.|++|++.+|+ +++.+.+......+..+.. ..+++++.+.++.+|+
T Consensus 1 M~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~d~ 80 (308)
T 1qyc_A 1 MGSRSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKNVDV 80 (308)
T ss_dssp -CCCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHTCSE
T ss_pred CCCCCEEEEEcCCcHHHHHHHHHHHhCCCCEEEEECCcccccCHHHHHHHHHHHhCCCEEEEeccCCHHHHHHHHcCCCE
Confidence 765679999996 999999999999999999999997 3444332211000101111 2344444444445788
Q ss_pred EEEecCC
Q psy9637 72 VMMLVKA 78 (490)
Q Consensus 72 Iil~vp~ 78 (490)
||.+.+.
T Consensus 81 vi~~a~~ 87 (308)
T 1qyc_A 81 VISTVGS 87 (308)
T ss_dssp EEECCCG
T ss_pred EEECCcc
Confidence 8877653
|
| >3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0017 Score=63.26 Aligned_cols=73 Identities=16% Similarity=0.275 Sum_probs=58.4
Q ss_pred CcEEEEcccH-HHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 5 GDIGLIGLAV-MGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 5 ~~IgiIGlG~-MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
+++.|||.|. +|.++|..|...|.+|++++++ +.++++.+.. +|+||.+++....+.
T Consensus 161 k~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~-------------------t~~L~~~~~~---ADIVI~Avg~p~~I~ 218 (285)
T 3p2o_A 161 KDAVIIGASNIVGRPMATMLLNAGATVSVCHIK-------------------TKDLSLYTRQ---ADLIIVAAGCVNLLR 218 (285)
T ss_dssp CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT-------------------CSCHHHHHTT---CSEEEECSSCTTCBC
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCC-------------------chhHHHHhhc---CCEEEECCCCCCcCC
Confidence 5799999887 6999999999999999999864 3466677766 999999998753321
Q ss_pred HHHHhhcccCCCCCEEEcCCCC
Q psy9637 84 DFIDKLVPLLEKGDIIIDGGNS 105 (490)
Q Consensus 84 ~vl~~l~~~l~~g~iiId~s~~ 105 (490)
...+++|.+|||.+..
T Consensus 219 ------~~~vk~GavVIDVgi~ 234 (285)
T 3p2o_A 219 ------SDMVKEGVIVVDVGIN 234 (285)
T ss_dssp ------GGGSCTTEEEEECCCE
T ss_pred ------HHHcCCCeEEEEeccC
Confidence 1346899999999864
|
| >1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A* | Back alignment and structure |
|---|
Probab=96.90 E-value=0.011 Score=56.58 Aligned_cols=87 Identities=13% Similarity=0.221 Sum_probs=56.4
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHC-CCeEE-EEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCch
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDH-GFTVV-AYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSA 81 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~ 81 (490)
|||+|+|+ |+||+.++..+.+. +++|+ ++|++ ++++++... .+|+||-+.++. .
T Consensus 1 mkV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~--------------------~dl~~~~~~--~~DvvIDfT~p~-a 57 (245)
T 1p9l_A 1 MRVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAG--------------------DPLSLLTDG--NTEVVIDFTHPD-V 57 (245)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTT--------------------CCTHHHHHT--TCCEEEECSCTT-T
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccC--------------------CCHHHHhcc--CCcEEEEccChH-H
Confidence 48999996 99999999998866 89987 56654 234455441 389999666553 5
Q ss_pred HHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHH
Q psy9637 82 VDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKAL 117 (490)
Q Consensus 82 v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l 117 (490)
+.+.+... +..|.-+|-++|....+..+..+.+
T Consensus 58 ~~~~~~~a---~~~g~~~VigTTG~~~e~~~~l~~a 90 (245)
T 1p9l_A 58 VMGNLEFL---IDNGIHAVVGTTGFTAERFQQVESW 90 (245)
T ss_dssp HHHHHHHH---HHTTCEEEECCCCCCHHHHHHHHHH
T ss_pred HHHHHHHH---HHcCCCEEEcCCCCCHHHHHHHHHH
Confidence 55555443 3456767777776544433333333
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0007 Score=63.05 Aligned_cols=74 Identities=24% Similarity=0.293 Sum_probs=50.9
Q ss_pred CCCCCcEEEEc-ccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCee--ccCCHHHHHhhCCCCcEEEEecC
Q psy9637 1 MAAKGDIGLIG-LAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNII--GAHSLEELVKNLKKPRRVMMLVK 77 (490)
Q Consensus 1 M~~~~~IgiIG-lG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~--~~~s~~e~v~~l~~~dvIil~vp 77 (490)
|+.||+|.|.| .|.+|..++..|++.|++|++.+|++++.+.+.. +. .+. -..+.+++.+.++.+|+||.+..
T Consensus 1 M~~m~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~-~~---~~~~~Dl~d~~~~~~~~~~~d~vi~~a~ 76 (227)
T 3dhn_A 1 MEKVKKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKIENE-HL---KVKKADVSSLDEVCEVCKGADAVISAFN 76 (227)
T ss_dssp --CCCEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGGCCCCCT-TE---EEECCCTTCHHHHHHHHTTCSEEEECCC
T ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcccchhccC-ce---EEEEecCCCHHHHHHHhcCCCEEEEeCc
Confidence 77778999999 5999999999999999999999999876433210 00 000 12345555555556898888764
Q ss_pred C
Q psy9637 78 A 78 (490)
Q Consensus 78 ~ 78 (490)
.
T Consensus 77 ~ 77 (227)
T 3dhn_A 77 P 77 (227)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.87 E-value=0.00039 Score=69.74 Aligned_cols=85 Identities=16% Similarity=0.106 Sum_probs=58.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCC---------CeE-EEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEE
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHG---------FTV-VAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVM 73 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G---------~~V-~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIi 73 (490)
++||||||+|.||..++..|.++. .+| .++|+++++.+.+ . ....++|+++++ . .|+|+
T Consensus 3 ~irvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~~------~-~~~~~~d~~~ll-~---iDvVv 71 (332)
T 2ejw_A 3 ALKIALLGGGTVGSAFYNLVLERAEELSAFGVVPRFLGVLVRDPRKPRAI------P-QELLRAEPFDLL-E---ADLVV 71 (332)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTGGGGGGGTEEEEEEEEECSCTTSCCSS------C-GGGEESSCCCCT-T---CSEEE
T ss_pred eeEEEEEcCCHHHHHHHHHHHhChhhHhhcCCCEEEEEEEECCHHHhhcc------C-cccccCCHHHHh-C---CCEEE
Confidence 468999999999999999998763 454 4679886543211 0 012466777777 4 89999
Q ss_pred EecCCCchHHHHHHhhcccCCCCCEEEcC
Q psy9637 74 MLVKAGSAVDDFIDKLVPLLEKGDIIIDG 102 (490)
Q Consensus 74 l~vp~~~~v~~vl~~l~~~l~~g~iiId~ 102 (490)
.|+|+.....+.+. ..|+.|+-||..
T Consensus 72 e~t~~~~~a~~~~~---~AL~aGKhVVta 97 (332)
T 2ejw_A 72 EAMGGVEAPLRLVL---PALEAGIPLITA 97 (332)
T ss_dssp ECCCCSHHHHHHHH---HHHHTTCCEEEC
T ss_pred ECCCCcHHHHHHHH---HHHHcCCeEEEC
Confidence 99998644444443 345577777754
|
| >2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0013 Score=66.40 Aligned_cols=97 Identities=14% Similarity=0.195 Sum_probs=58.3
Q ss_pred CCCCCcEEEEc-ccHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHc-c-cCC-CCeeccCCHHHHHhhCCCCcEEEEe
Q psy9637 1 MAAKGDIGLIG-LAVMGQNLILNMNDHGF-TVVAYNRTTAKVDSFLAN-E-AKG-TNIIGAHSLEELVKNLKKPRRVMML 75 (490)
Q Consensus 1 M~~~~~IgiIG-lG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~-g-~~~-~~i~~~~s~~e~v~~l~~~dvIil~ 75 (490)
|+.|+||+|+| .|.+|..+.+.|.++.. +++...+..+.-+++.+. + ..+ ..+. ..++++ +..+|+||+|
T Consensus 1 M~~~~kV~IiGAtG~iG~~llr~L~~~p~~elv~v~s~~~~g~~~~~~~~~~~g~~~~~-~~~~~~----~~~vDvV~~a 75 (345)
T 2ozp_A 1 MTGKKTLSIVGASGYAGGEFLRLALSHPYLEVKQVTSRRFAGEPVHFVHPNLRGRTNLK-FVPPEK----LEPADILVLA 75 (345)
T ss_dssp ---CEEEEEETTTSHHHHHHHHHHHTCTTEEEEEEBCSTTTTSBGGGTCGGGTTTCCCB-CBCGGG----CCCCSEEEEC
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHcCCCcEEEEEECchhhCchhHHhCchhcCccccc-ccchhH----hcCCCEEEEc
Confidence 65567999999 79999999999997764 766655432221111110 0 000 1111 223332 3458999999
Q ss_pred cCCCchHHHHHHhhcccCCCCCEEEcCCCCC
Q psy9637 76 VKAGSAVDDFIDKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 76 vp~~~~v~~vl~~l~~~l~~g~iiId~s~~~ 106 (490)
+|.. ...+....+ +..|..|||.|+..
T Consensus 76 ~g~~-~s~~~a~~~---~~aG~~VId~Sa~~ 102 (345)
T 2ozp_A 76 LPHG-VFAREFDRY---SALAPVLVDLSADF 102 (345)
T ss_dssp CCTT-HHHHTHHHH---HTTCSEEEECSSTT
T ss_pred CCcH-HHHHHHHHH---HHCCCEEEEcCccc
Confidence 9996 444444433 45788999999854
|
| >2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.85 E-value=0.0031 Score=62.26 Aligned_cols=102 Identities=18% Similarity=0.225 Sum_probs=70.6
Q ss_pred eeecCCCCcchhHHhhhhHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhccCcchhHHHHH-HHHHhcccCC-CCCc
Q psy9637 350 DWVGEQGAGHFVKMVHNGIEYGDMQLICEAYHLMTGALGMSHDEMSAVFEDWNKGELDSFLIEI-TKDILKFKDT-DGAP 427 (490)
Q Consensus 350 ~~~g~~g~gh~vkmvhngiey~~m~~~~E~~~~~~~~~~~~~~~~~~~~~~w~~g~~~s~l~~~-~~~~~~~~~~-~~~~ 427 (490)
.++|+.|.|+..|++.|.+-...+.++.|++.+++. .|++. .++.+.++.+...|+.+.. ....++. |- .| .
T Consensus 188 ~~~~~~~~~~~~K~~~n~~~~~~~~~~~Ea~~la~~-~G~~~---~~~~~~~~~~~~~s~~~~~~~~~~l~~-~~~~g-~ 261 (316)
T 2uyy_A 188 FFLGEVGNAAKMMLIVNMVQGSFMATIAEGLTLAQV-TGQSQ---QTLLDILNQGQLASIFLDQKCQNILQG-NFKPD-F 261 (316)
T ss_dssp EECSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCCH---HHHHHHHHHSTTCCHHHHHHHHHHHHT-CCCCS-S
T ss_pred EEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCH---HHHHHHHHcCCCCCHHHHHhhHHhhcC-CCCCC-C
Confidence 356888999999999999999999999999999886 88865 4455556666655655543 3334442 21 12 1
Q ss_pred chhhhccccCCCcchHHHHHHHHhcCCCchhhHHHH
Q psy9637 428 LVEKIKDYAGQKGTGKWTAISALDYGVPVTLIGESV 463 (490)
Q Consensus 428 ~l~~i~~~~~~~g~g~w~~~~a~~~~~p~~~i~~a~ 463 (490)
.++.+.. .-++.++.|.+.|+|+|++....
T Consensus 262 ~~~~~~k------d~~~~~~~a~~~gv~~p~~~~v~ 291 (316)
T 2uyy_A 262 YLKYIQK------DLRLAIALGDAVNHPTPMAAAAN 291 (316)
T ss_dssp BHHHHHH------HHHHHHHHHHHTTCCCHHHHHHH
T ss_pred cHHHHHH------HHHHHHHHHHHhCCCChHHHHHH
Confidence 2333221 12478899999999999876543
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=96.85 E-value=0.0036 Score=60.06 Aligned_cols=121 Identities=12% Similarity=0.168 Sum_probs=64.8
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHcccC-CCCe--eccCCHHHHHhhCCCCcEEEEecCCCc
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGF-TVVAYNRTTAKVDSFLANEAK-GTNI--IGAHSLEELVKNLKKPRRVMMLVKAGS 80 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~g~~-~~~i--~~~~s~~e~v~~l~~~dvIil~vp~~~ 80 (490)
.+|.|||+|.+|..++.+|++.|. +++++|++.-....+..+..- ...+ .-+....+.+..+ .+++-+...+..-
T Consensus 32 ~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~-np~~~v~~~~~~~ 110 (249)
T 1jw9_B 32 SRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRI-NPHIAITPVNALL 110 (249)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHH-CTTSEEEEECSCC
T ss_pred CeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHH-CCCcEEEEEeccC
Confidence 589999999999999999999997 899999986111111100000 0000 0011111111111 1344444444321
Q ss_pred hHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCC
Q psy9637 81 AVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSG 131 (490)
Q Consensus 81 ~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsG 131 (490)
.++-+.++ +..-|+|||++.. +.......+.+.+.++.++++.+.|
T Consensus 111 -~~~~~~~~---~~~~DvVi~~~d~-~~~~~~l~~~~~~~~~p~i~~~~~g 156 (249)
T 1jw9_B 111 -DDAELAAL---IAEHDLVLDCTDN-VAVRNQLNAGCFAAKVPLVSGAAIR 156 (249)
T ss_dssp -CHHHHHHH---HHTSSEEEECCSS-HHHHHHHHHHHHHHTCCEEEEEEEB
T ss_pred -CHhHHHHH---HhCCCEEEEeCCC-HHHHHHHHHHHHHcCCCEEEeeecc
Confidence 12222333 2345899998753 4443444466677788888775543
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0037 Score=57.54 Aligned_cols=70 Identities=20% Similarity=0.339 Sum_probs=48.8
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHH-HhhCCCCcEEEEecCCC
Q psy9637 5 GDIGLIG-LAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEEL-VKNLKKPRRVMMLVKAG 79 (490)
Q Consensus 5 ~~IgiIG-lG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~-v~~l~~~dvIil~vp~~ 79 (490)
|||.|+| .|.+|..++..|+++|++|++.+|++++.+.+. .+.. +. ..|+.+. .+.+..+|+||.+....
T Consensus 1 MkvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~-~~~~---~~-~~D~~d~~~~~~~~~d~vi~~ag~~ 72 (221)
T 3ew7_A 1 MKIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGKITQTH-KDIN---IL-QKDIFDLTLSDLSDQNVVVDAYGIS 72 (221)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSHHHHHHC-SSSE---EE-ECCGGGCCHHHHTTCSEEEECCCSS
T ss_pred CeEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCchhhhhcc-CCCe---EE-eccccChhhhhhcCCCEEEECCcCC
Confidence 5899999 599999999999999999999999998877654 2111 11 1111100 03334589999888553
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0025 Score=57.96 Aligned_cols=74 Identities=18% Similarity=0.276 Sum_probs=50.0
Q ss_pred CCCCCcEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeec--cCCHHHHHhhCCCCcEEEEecC
Q psy9637 1 MAAKGDIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIG--AHSLEELVKNLKKPRRVMMLVK 77 (490)
Q Consensus 1 M~~~~~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~--~~s~~e~v~~l~~~dvIil~vp 77 (490)
|+. |+|.|+|. |.+|..+++.|+++|++|++.+|++++.+.+...+. .+.. ..+.+++.+.++.+|+||.+..
T Consensus 1 M~~-~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~~~---~~~~~D~~~~~~~~~~~~~~d~vi~~a~ 76 (206)
T 1hdo_A 1 MAV-KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPA---HVVVGDVLQAADVDKTVAGQDAVIVLLG 76 (206)
T ss_dssp CCC-CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSSCCCS---EEEESCTTSHHHHHHHHTTCSEEEECCC
T ss_pred CCC-CEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChhhcccccCCce---EEEEecCCCHHHHHHHHcCCCEEEECcc
Confidence 644 68999997 999999999999999999999999875432111010 0111 2344444444555788887775
Q ss_pred C
Q psy9637 78 A 78 (490)
Q Consensus 78 ~ 78 (490)
.
T Consensus 77 ~ 77 (206)
T 1hdo_A 77 T 77 (206)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0007 Score=63.85 Aligned_cols=73 Identities=12% Similarity=0.210 Sum_probs=49.5
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHHCC-CeEEEEeCChHHHHHHHHcccCCCCee-ccCCHHHHHhhCCCCcEEEEecCC
Q psy9637 4 KGDIGLIG-LAVMGQNLILNMNDHG-FTVVAYNRTTAKVDSFLANEAKGTNII-GAHSLEELVKNLKKPRRVMMLVKA 78 (490)
Q Consensus 4 ~~~IgiIG-lG~MG~~lA~~L~~~G-~~V~v~dr~~~~~~~l~~~g~~~~~i~-~~~s~~e~v~~l~~~dvIil~vp~ 78 (490)
|++|.|.| .|.+|..+++.|++.| ++|++++|++++.+.+...+.. -+. -..+.+++.+.++.+|+||.+...
T Consensus 23 mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~~~~~~~~--~~~~Dl~d~~~~~~~~~~~D~vv~~a~~ 98 (236)
T 3qvo_A 23 MKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKPYPTNSQ--IIMGDVLNHAALKQAMQGQDIVYANLTG 98 (236)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGSCSSCCTTEE--EEECCTTCHHHHHHHHTTCSEEEEECCS
T ss_pred ccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhhcccccCCcE--EEEecCCCHHHHHHHhcCCCEEEEcCCC
Confidence 45788998 6999999999999999 9999999998765432211110 000 123455555545568888877654
|
| >4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=96.76 E-value=0.003 Score=61.60 Aligned_cols=73 Identities=23% Similarity=0.311 Sum_probs=58.2
Q ss_pred CcEEEEcccH-HHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 5 GDIGLIGLAV-MGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 5 ~~IgiIGlG~-MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
+++.|||.|. +|.++|..|...|.+|+++++. +.++++.+.. +|+||.+++.+..+.
T Consensus 162 k~vvVvGrs~iVG~plA~lL~~~gAtVtv~hs~-------------------T~~L~~~~~~---ADIVI~Avg~p~~I~ 219 (286)
T 4a5o_A 162 MDAVVVGASNIVGRPMALELLLGGCTVTVTHRF-------------------TRDLADHVSR---ADLVVVAAGKPGLVK 219 (286)
T ss_dssp CEEEEECTTSTTHHHHHHHHHHTTCEEEEECTT-------------------CSCHHHHHHT---CSEEEECCCCTTCBC
T ss_pred CEEEEECCCchhHHHHHHHHHHCCCeEEEEeCC-------------------CcCHHHHhcc---CCEEEECCCCCCCCC
Confidence 5799999876 8999999999999999999753 2466677776 999999998753321
Q ss_pred HHHHhhcccCCCCCEEEcCCCC
Q psy9637 84 DFIDKLVPLLEKGDIIIDGGNS 105 (490)
Q Consensus 84 ~vl~~l~~~l~~g~iiId~s~~ 105 (490)
...+++|.+|||.+..
T Consensus 220 ------~~~vk~GavVIDvgi~ 235 (286)
T 4a5o_A 220 ------GEWIKEGAIVIDVGIN 235 (286)
T ss_dssp ------GGGSCTTCEEEECCSC
T ss_pred ------HHHcCCCeEEEEeccc
Confidence 1346899999999864
|
| >1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2 | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0029 Score=61.70 Aligned_cols=73 Identities=21% Similarity=0.306 Sum_probs=58.7
Q ss_pred CcEEEEcccH-HHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 5 GDIGLIGLAV-MGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 5 ~~IgiIGlG~-MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
.++.|||.|. +|.++|..|...|.+|+++++. +.++.+.+.. +|+||.+++....+.
T Consensus 160 k~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~-------------------t~~L~~~~~~---ADIVI~Avg~p~lI~ 217 (288)
T 1b0a_A 160 LNAVVIGASNIVGRPMSMELLLAGCTTTVTHRF-------------------TKNLRHHVEN---ADLLIVAVGKPGFIP 217 (288)
T ss_dssp CEEEEECCCTTTHHHHHHHHHTTTCEEEEECSS-------------------CSCHHHHHHH---CSEEEECSCCTTCBC
T ss_pred CEEEEECCChHHHHHHHHHHHHCCCeEEEEeCC-------------------chhHHHHhcc---CCEEEECCCCcCcCC
Confidence 5899999996 6999999999999999999754 3567777777 999999999763211
Q ss_pred HHHHhhcccCCCCCEEEcCCCC
Q psy9637 84 DFIDKLVPLLEKGDIIIDGGNS 105 (490)
Q Consensus 84 ~vl~~l~~~l~~g~iiId~s~~ 105 (490)
. ..+++|.+|||.+..
T Consensus 218 ---~---~~vk~GavVIDVgi~ 233 (288)
T 1b0a_A 218 ---G---DWIKEGAIVIDVGIN 233 (288)
T ss_dssp ---T---TTSCTTCEEEECCCE
T ss_pred ---H---HHcCCCcEEEEccCC
Confidence 1 246899999999864
|
| >1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0017 Score=65.21 Aligned_cols=94 Identities=13% Similarity=0.170 Sum_probs=60.0
Q ss_pred CcEEEEcccHHHHHHHHHHHHC-CCeEE-EEeCChHHHHHHHHccc-C-------------CCCeeccCCHHHHHhhCCC
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDH-GFTVV-AYNRTTAKVDSFLANEA-K-------------GTNIIGAHSLEELVKNLKK 68 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~g~-~-------------~~~i~~~~s~~e~v~~l~~ 68 (490)
+||||+|+|+||..+++.|.++ +++|+ +.|+++.....+..... . ...+....++.++...
T Consensus 2 ikVgIiGaG~iG~~l~r~L~~~~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~l~v~~~~~~~~~~--- 78 (337)
T 1cf2_P 2 KAVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLDE--- 78 (337)
T ss_dssp EEEEEECCSTTHHHHHHHHHTSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHHT---
T ss_pred eEEEEEeECHHHHHHHHHHHcCCCcEEEEEEcCChhHHHHhcCCcchhhccccccceeeecCCceEEcCCHHHHhcC---
Confidence 5899999999999999999874 45664 46777665544433210 0 0011122356666555
Q ss_pred CcEEEEecCCCchHHHHHHhhcccCCCCCEEEcCCCC
Q psy9637 69 PRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNS 105 (490)
Q Consensus 69 ~dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~s~~ 105 (490)
+|+||.|+|.. ...+....+ ++.|..|||.+..
T Consensus 79 vDvV~~atp~~-~~~~~a~~~---l~aG~~VId~sp~ 111 (337)
T 1cf2_P 79 ADIVIDCTPEG-IGAKNLKMY---KEKGIKAIFQGGE 111 (337)
T ss_dssp CSEEEECCSTT-HHHHHHHHH---HHHTCCEEECTTS
T ss_pred CCEEEECCCch-hhHHHHHHH---HHcCCEEEEecCC
Confidence 89999999986 444444433 3346668887765
|
| >1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0055 Score=61.56 Aligned_cols=94 Identities=14% Similarity=0.153 Sum_probs=59.4
Q ss_pred CcEEEEcccHHHHHHHHHHHHCC-CeEE-EEeCChHHHHHHHHc-ccC------------CCCeeccCCHHHHHhhCCCC
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHG-FTVV-AYNRTTAKVDSFLAN-EAK------------GTNIIGAHSLEELVKNLKKP 69 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G-~~V~-v~dr~~~~~~~l~~~-g~~------------~~~i~~~~s~~e~v~~l~~~ 69 (490)
.||||+|+|+||..+++.|.++. .+|+ +.|++++....+... +.. ...+....+++++... +
T Consensus 2 ikVgIiGaG~iG~~~~r~L~~~p~~elvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~v~v~~~~e~l~~~---v 78 (340)
T 1b7g_O 2 VNVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKT---S 78 (340)
T ss_dssp EEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHHH---C
T ss_pred eEEEEEecCHHHHHHHHHHHcCCCCEEEEEEcCChHHHHHHHHhcCcceecCcCHHHHhcccccccccCHhHhhcC---C
Confidence 58999999999999999998764 4554 678886665544433 211 0011122344455445 8
Q ss_pred cEEEEecCCCchHHHHHHhhcccCCCCCEEEcCCCC
Q psy9637 70 RRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNS 105 (490)
Q Consensus 70 dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~s~~ 105 (490)
|+|+.|+|.. ...+..... ++.|..+||.|..
T Consensus 79 DvV~~aTp~~-~s~~~a~~~---~~aG~kvV~~sa~ 110 (340)
T 1b7g_O 79 DIVVDTTPNG-VGAQYKPIY---LQLQRNAIFQGGE 110 (340)
T ss_dssp SEEEECCSTT-HHHHHHHHH---HHTTCEEEECTTS
T ss_pred CEEEECCCCc-hhHHHHHHH---HHcCCeEEEeCCC
Confidence 9999999986 344443333 3457777777654
|
| >1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A* | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0028 Score=62.18 Aligned_cols=74 Identities=18% Similarity=0.192 Sum_probs=59.1
Q ss_pred CcEEEEcccH-HHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 5 GDIGLIGLAV-MGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 5 ~~IgiIGlG~-MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
.++.|||.|. +|.++|..|...|.+|++++++ +.++.+.+.. +|+||.+++....+.
T Consensus 166 k~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~-------------------t~~L~~~~~~---ADIVI~Avg~p~~I~ 223 (301)
T 1a4i_A 166 RHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSK-------------------TAHLDEEVNK---GDILVVATGQPEMVK 223 (301)
T ss_dssp CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT-------------------CSSHHHHHTT---CSEEEECCCCTTCBC
T ss_pred CEEEEECCCchHHHHHHHHHHhCCCeEEEEECC-------------------cccHHHHhcc---CCEEEECCCCcccCC
Confidence 5799999995 7999999999999999999843 3466777776 999999998863211
Q ss_pred HHHHhhcccCCCCCEEEcCCCCC
Q psy9637 84 DFIDKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 84 ~vl~~l~~~l~~g~iiId~s~~~ 106 (490)
. ..+++|.+|||.+...
T Consensus 224 ---~---~~vk~GavVIDVgi~~ 240 (301)
T 1a4i_A 224 ---G---EWIKPGAIVIDCGINY 240 (301)
T ss_dssp ---G---GGSCTTCEEEECCCBC
T ss_pred ---H---HHcCCCcEEEEccCCC
Confidence 1 2367999999999754
|
| >3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=96.73 E-value=0.006 Score=63.62 Aligned_cols=66 Identities=17% Similarity=0.183 Sum_probs=46.4
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCCh----HHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEe
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTT----AKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMML 75 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~----~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~ 75 (490)
++|.|||+|..|.+.|+.|.+.|++|+++|+++ ...+.+.+.|.. +..-..+.+.... .+|+|+++
T Consensus 10 k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~~~~~~~~~~L~~~gi~---~~~g~~~~~~~~~--~~d~vv~s 79 (451)
T 3lk7_A 10 KKVLVLGLARSGEAAARLLAKLGAIVTVNDGKPFDENPTAQSLLEEGIK---VVCGSHPLELLDE--DFCYMIKN 79 (451)
T ss_dssp CEEEEECCTTTHHHHHHHHHHTTCEEEEEESSCGGGCHHHHHHHHTTCE---EEESCCCGGGGGS--CEEEEEEC
T ss_pred CEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCcccCChHHHHHHhCCCE---EEECCChHHhhcC--CCCEEEEC
Confidence 589999999999999999999999999999854 345566665542 2222233333221 16888876
|
| >3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A* | Back alignment and structure |
|---|
Probab=96.73 E-value=0.01 Score=58.85 Aligned_cols=101 Identities=13% Similarity=0.121 Sum_probs=61.9
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHC-C--CeEEEEeCChH---HHHHHHHcccCCCCeecc--CCHHHHHhhCCCCcEEEEe
Q psy9637 5 GDIGLIG-LAVMGQNLILNMNDH-G--FTVVAYNRTTA---KVDSFLANEAKGTNIIGA--HSLEELVKNLKKPRRVMML 75 (490)
Q Consensus 5 ~~IgiIG-lG~MG~~lA~~L~~~-G--~~V~v~dr~~~---~~~~l~~~g~~~~~i~~~--~s~~e~v~~l~~~dvIil~ 75 (490)
|||+||| +|.+|..++..|..+ + .++.++|+++. ....+... ....++... ++..+..+. +|+||++
T Consensus 1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~~~~G~a~Dl~~~-~~~~~v~~~~~~~~~~~~~~---aDivii~ 76 (312)
T 3hhp_A 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHI-PTAVKIKGFSGEDATPALEG---ADVVLIS 76 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSSTTHHHHHHHHHTS-CSSEEEEEECSSCCHHHHTT---CSEEEEC
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCCCchhHHHHhhCC-CCCceEEEecCCCcHHHhCC---CCEEEEe
Confidence 5899999 899999999999875 5 58999999861 12222221 111123221 233444444 8999998
Q ss_pred cCCCc---------------hHHHHHHhhcccCCCCCEEEcCCCCChHHHHH
Q psy9637 76 VKAGS---------------AVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDR 112 (490)
Q Consensus 76 vp~~~---------------~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~ 112 (490)
.+.+. .++++.+.+..+ .|+.+|+..|| |-++.-
T Consensus 77 ag~~rkpG~~R~dll~~N~~I~~~i~~~i~~~-~p~a~vlvvtN--Pvd~~t 125 (312)
T 3hhp_A 77 AGVARKPGMDRSDLFNVNAGIVKNLVQQVAKT-CPKACIGIITN--PVNTTV 125 (312)
T ss_dssp CSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CTTSEEEECSS--CHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCcEEEEecC--cchhHH
Confidence 75432 123333455554 46778888887 444443
|
| >2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0024 Score=62.13 Aligned_cols=73 Identities=23% Similarity=0.313 Sum_probs=57.8
Q ss_pred CcEEEEcccHH-HHHHHHHHHHC--CCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCch
Q psy9637 5 GDIGLIGLAVM-GQNLILNMNDH--GFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSA 81 (490)
Q Consensus 5 ~~IgiIGlG~M-G~~lA~~L~~~--G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~ 81 (490)
+++.|||.|.| |.++|..|... |.+|++++++ +.++.+.+.. +|+||.+++.+..
T Consensus 159 k~vvVvG~s~iVG~p~A~lL~~~g~~atVtv~h~~-------------------t~~L~~~~~~---ADIVI~Avg~p~~ 216 (281)
T 2c2x_A 159 AHVVVIGRGVTVGRPLGLLLTRRSENATVTLCHTG-------------------TRDLPALTRQ---ADIVVAAVGVAHL 216 (281)
T ss_dssp CEEEEECCCTTTHHHHHHHHTSTTTCCEEEEECTT-------------------CSCHHHHHTT---CSEEEECSCCTTC
T ss_pred CEEEEECCCcHHHHHHHHHHhcCCCCCEEEEEECc-------------------hhHHHHHHhh---CCEEEECCCCCcc
Confidence 58999999976 99999999999 8999999754 2466666666 9999999987642
Q ss_pred HHHHHHhhcccCCCCCEEEcCCCC
Q psy9637 82 VDDFIDKLVPLLEKGDIIIDGGNS 105 (490)
Q Consensus 82 v~~vl~~l~~~l~~g~iiId~s~~ 105 (490)
+. . ..+++|.+|||.+..
T Consensus 217 I~---~---~~vk~GavVIDVgi~ 234 (281)
T 2c2x_A 217 LT---A---DMVRPGAAVIDVGVS 234 (281)
T ss_dssp BC---G---GGSCTTCEEEECCEE
T ss_pred cC---H---HHcCCCcEEEEccCC
Confidence 11 1 236789999999864
|
| >3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=96.63 E-value=0.00062 Score=58.12 Aligned_cols=103 Identities=13% Similarity=0.139 Sum_probs=73.1
Q ss_pred CCcEEEEcc----cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCC
Q psy9637 4 KGDIGLIGL----AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAG 79 (490)
Q Consensus 4 ~~~IgiIGl----G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~ 79 (490)
.++|+|||+ ++.|..+.++|.+.||+|+..|+..+.+ .....+.|+.|+-. +|++++++|+
T Consensus 4 p~siAVVGaS~~~~~~g~~v~~~L~~~g~~V~pVnP~~~~i----------~G~~~y~sl~dlp~----vDlavi~~p~- 68 (122)
T 3ff4_A 4 MKKTLILGATPETNRYAYLAAERLKSHGHEFIPVGRKKGEV----------LGKTIINERPVIEG----VDTVTLYINP- 68 (122)
T ss_dssp CCCEEEETCCSCTTSHHHHHHHHHHHHTCCEEEESSSCSEE----------TTEECBCSCCCCTT----CCEEEECSCH-
T ss_pred CCEEEEEccCCCCCCHHHHHHHHHHHCCCeEEEECCCCCcC----------CCeeccCChHHCCC----CCEEEEEeCH-
Confidence 457999997 6799999999999999998888753211 11235667665532 7999999998
Q ss_pred chHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccc
Q psy9637 80 SAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVG 126 (490)
Q Consensus 80 ~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld 126 (490)
+.+.++++++...--+ .+++..|.. ..+..+.+++.|++++.
T Consensus 69 ~~v~~~v~e~~~~g~k-~v~~~~G~~----~~e~~~~a~~~Girvv~ 110 (122)
T 3ff4_A 69 QNQLSEYNYILSLKPK-RVIFNPGTE----NEELEEILSENGIEPVI 110 (122)
T ss_dssp HHHGGGHHHHHHHCCS-EEEECTTCC----CHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHhcCCC-EEEECCCCC----hHHHHHHHHHcCCeEEC
Confidence 4777888777654323 466655542 24555777888998873
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0056 Score=56.58 Aligned_cols=70 Identities=17% Similarity=0.184 Sum_probs=48.9
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHH-HhhCCCCcEEEEecCC
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEEL-VKNLKKPRRVMMLVKA 78 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~-v~~l~~~dvIil~vp~ 78 (490)
|||.|.|. |.+|..++..|++.|++|++.+|++++.+.+...+.. + ...|+.+. .+.++.+|+||.+...
T Consensus 1 MkilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~---~-~~~D~~d~~~~~~~~~d~vi~~ag~ 72 (224)
T 3h2s_A 1 MKIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAADRLGATVA---T-LVKEPLVLTEADLDSVDAVVDALSV 72 (224)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHTCTTSE---E-EECCGGGCCHHHHTTCSEEEECCCC
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecccccccccCCCce---E-EecccccccHhhcccCCEEEECCcc
Confidence 47999997 9999999999999999999999999887765432221 1 11111110 0233458999988754
|
| >2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A* | Back alignment and structure |
|---|
Probab=96.60 E-value=0.00031 Score=65.88 Aligned_cols=80 Identities=20% Similarity=0.216 Sum_probs=54.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHH-CCCeEE-EEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCch
Q psy9637 4 KGDIGLIGLAVMGQNLILNMND-HGFTVV-AYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSA 81 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~-~G~~V~-v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~ 81 (490)
.++|+|||+|.+|..++..+.. .|++++ ++|.++++...... +.++...+++.++++. +.|+|++|+|+. .
T Consensus 80 ~~rV~IIGaG~~G~~la~~~~~~~g~~iVg~~D~dp~k~g~~i~----gv~V~~~~dl~ell~~--~ID~ViIA~Ps~-~ 152 (211)
T 2dt5_A 80 KWGLCIVGMGRLGSALADYPGFGESFELRGFFDVDPEKVGRPVR----GGVIEHVDLLPQRVPG--RIEIALLTVPRE-A 152 (211)
T ss_dssp CEEEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCTTTTTCEET----TEEEEEGGGHHHHSTT--TCCEEEECSCHH-H
T ss_pred CCEEEEECccHHHHHHHHhHhhcCCcEEEEEEeCCHHHHhhhhc----CCeeecHHhHHHHHHc--CCCEEEEeCCch-h
Confidence 3579999999999999986321 277765 57999886543221 1223346778888765 489999999985 4
Q ss_pred HHHHHHhhc
Q psy9637 82 VDDFIDKLV 90 (490)
Q Consensus 82 v~~vl~~l~ 90 (490)
..++.+.+.
T Consensus 153 ~~ei~~~l~ 161 (211)
T 2dt5_A 153 AQKAADLLV 161 (211)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 445555443
|
| >2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0047 Score=62.16 Aligned_cols=95 Identities=7% Similarity=0.043 Sum_probs=58.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHHC-CCeEE-EEeCChHHHHHHHHcc--cC--------------CCCeeccCCHHHHHhh
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDH-GFTVV-AYNRTTAKVDSFLANE--AK--------------GTNIIGAHSLEELVKN 65 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~g--~~--------------~~~i~~~~s~~e~v~~ 65 (490)
|+||||+|+|++|+.+++.|.++ +++|+ +.|++++....+.+.. .. +..+....++.++...
T Consensus 2 mikVgI~G~G~IGr~v~r~l~~~~~~evvaV~d~~~~~~~~l~~~dg~s~~g~~~~~~~v~~~~~~~l~v~~~~~~~~~~ 81 (343)
T 2yyy_A 2 PAKVLINGYGSIGKRVADAVSMQDDMEVIGVTKTKPDFEARLAVEKGYKLFVAIPDNERVKLFEDAGIPVEGTILDIIED 81 (343)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSCCHHHHHHHHHTTCCCCCBGGGTGGG
T ss_pred ceEEEEECCCHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhcCCccccccCCCceeecccCCeEEECCchHHhccC
Confidence 35999999999999999999876 57765 4566666554444321 00 0011112233333333
Q ss_pred CCCCcEEEEecCCCchHHHHHHhhcccCCCCCEEEcCCC
Q psy9637 66 LKKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGN 104 (490)
Q Consensus 66 l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~s~ 104 (490)
+|+|+.|+|.+ ...+... ..+++.|..||+.+.
T Consensus 82 ---vDiV~eatg~~-~s~~~a~--~~~l~aG~~VI~sap 114 (343)
T 2yyy_A 82 ---ADIVVDGAPKK-IGKQNLE--NIYKPHKVKAILQGG 114 (343)
T ss_dssp ---CSEEEECCCTT-HHHHHHH--HTTTTTTCEEEECTT
T ss_pred ---CCEEEECCCcc-ccHHHHH--HHHHHCCCEEEECCC
Confidence 89999999886 3233332 245677888887443
|
| >3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0021 Score=64.49 Aligned_cols=97 Identities=16% Similarity=0.199 Sum_probs=59.4
Q ss_pred CCCcEEEEc-ccHHHHHHHHHHHHC-CCeEEEEeCCh---HHHHHHHHcc--cCCC-CeeccC--CHHHHHhhCCCCcEE
Q psy9637 3 AKGDIGLIG-LAVMGQNLILNMNDH-GFTVVAYNRTT---AKVDSFLANE--AKGT-NIIGAH--SLEELVKNLKKPRRV 72 (490)
Q Consensus 3 ~~~~IgiIG-lG~MG~~lA~~L~~~-G~~V~v~dr~~---~~~~~l~~~g--~~~~-~i~~~~--s~~e~v~~l~~~dvI 72 (490)
.|+||+|+| .|.+|..|.+.|.++ .+++.....+. ..-+.+.+.. ..+. .+...+ +.+++.+ .+|+|
T Consensus 3 ~M~kv~IvGatG~vG~~l~~~L~~~p~~el~~l~s~~~~~saGk~~~~~~p~~~~~~~~~v~~~~~~~~~~~---~~Dvv 79 (337)
T 3dr3_A 3 AMLNTLIVGASGYAGAELVTYVNRHPHMNITALTVSAQSNDAGKLISDLHPQLKGIVELPLQPMSDISEFSP---GVDVV 79 (337)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTSBHHHHCGGGTTTCCCBEEEESSGGGTCT---TCSEE
T ss_pred CceEEEEECCCChHHHHHHHHHHhCCCCcEEEEEecCchhhcCCchHHhCccccCccceeEeccCCHHHHhc---CCCEE
Confidence 467999999 699999999999984 45777654332 2111121100 0010 111111 3444433 48999
Q ss_pred EEecCCCchHHHHHHhhcccCCCCCEEEcCCCCC
Q psy9637 73 MMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 73 il~vp~~~~v~~vl~~l~~~l~~g~iiId~s~~~ 106 (490)
|+|+|.+ ...+....+ ++.|..|||.|+-+
T Consensus 80 f~a~p~~-~s~~~~~~~---~~~g~~vIDlSa~f 109 (337)
T 3dr3_A 80 FLATAHE-VSHDLAPQF---LEAGCVVFDLSGAF 109 (337)
T ss_dssp EECSCHH-HHHHHHHHH---HHTTCEEEECSSTT
T ss_pred EECCChH-HHHHHHHHH---HHCCCEEEEcCCcc
Confidence 9999986 445555544 35789999999864
|
| >3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A* | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0073 Score=59.31 Aligned_cols=125 Identities=10% Similarity=0.182 Sum_probs=71.5
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHcccCCCCe--eccCCHHHHHhhCCCCcEEEEecCCCch
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGF-TVVAYNRTTAKVDSFLANEAKGTNI--IGAHSLEELVKNLKKPRRVMMLVKAGSA 81 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~g~~~~~i--~~~~s~~e~v~~l~~~dvIil~vp~~~~ 81 (490)
.+|.|||+|..|..++.+|++.|. +++++|.+.=....+.........+ .-+....+.+..+ .|++-+...+..-.
T Consensus 37 ~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~Ve~sNL~Rq~~~~~diG~~Ka~aa~~~L~~i-NP~v~v~~~~~~l~ 115 (292)
T 3h8v_A 37 FAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRLFFQPHQAGLSKVQAAEHTLRNI-NPDVLFEVHNYNIT 115 (292)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBC------------CCTTSBHHHHHHHHHHHH-CTTSEEEEECCCTT
T ss_pred CeEEEECcCHHHHHHHHHHHHcCCCEEEEECCCccChhhcccccCChhhcCchHHHHHHHHHHhh-CCCcEEEEecccCC
Confidence 589999999999999999999996 7889987752222221110000000 0122233333332 26777776664321
Q ss_pred HHHHHHhhcc-----cC---CCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCC
Q psy9637 82 VDDFIDKLVP-----LL---EKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSG 131 (490)
Q Consensus 82 v~~vl~~l~~-----~l---~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsG 131 (490)
..+.++.+.. .+ ..-|+|||++-. +..-..+.+.+...++.+++++++|
T Consensus 116 ~~~~~~~~~~~~~~~~l~~~~~~DlVid~~Dn-~~~R~~in~~c~~~~~Pli~~gv~~ 172 (292)
T 3h8v_A 116 TVENFQHFMDRISNGGLEEGKPVDLVLSCVDN-FEARMTINTACNELGQTWMESGVSE 172 (292)
T ss_dssp SHHHHHHHHHHHHHBSSSTTBCCSEEEECCSS-HHHHHHHHHHHHHHTCCEEEEEECT
T ss_pred cHHHHHHHhhhhcccccccCCCCCEEEECCcc-hhhhhHHHHHHHHhCCCEEEeeeec
Confidence 1122233221 11 356899999764 3433444477778899999998876
|
| >3u95_A Glycoside hydrolase, family 4; hydrolysis, cytosol; 2.00A {Thermotoga neapolitana} PDB: 1vjt_A* | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0022 Score=67.41 Aligned_cols=69 Identities=9% Similarity=0.198 Sum_probs=48.3
Q ss_pred CcEEEEcccHHHHH--HHHHHHH------CCCeEEEEeCChHHHHHHH-------HcccCCCCeeccCCHHHHHhhCCCC
Q psy9637 5 GDIGLIGLAVMGQN--LILNMND------HGFTVVAYNRTTAKVDSFL-------ANEAKGTNIIGAHSLEELVKNLKKP 69 (490)
Q Consensus 5 ~~IgiIGlG~MG~~--lA~~L~~------~G~~V~v~dr~~~~~~~l~-------~~g~~~~~i~~~~s~~e~v~~l~~~ 69 (490)
|||+|||.|..|.. +...++. .+.+|+.+|+++++++... +......++..+++..++++. +
T Consensus 1 mKI~iIGaGs~~~t~~l~~~~~~~~~l~~~~~ei~L~Di~~~rl~~~~~~~~~~~~~~~~~~~i~~t~d~~eAl~g---A 77 (477)
T 3u95_A 1 MKISIVGAGSVRFALQLVEDIAQTDELSREDTHIYLMDVHERRLNASYILARKYVEELNSPVKVVKTESLDEAIEG---A 77 (477)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTCTTTCSTTCEEEEECSCHHHHHHHHHHHHHHHHHHTCCCEEEEESCHHHHHTT---C
T ss_pred CEEEEECCCchhhHHHHHHHHHhhHhcCCCCCEEEEECCCHHHHHHHHHHHHHHHHHcCCCeEEEEeCCHHHHhCC---C
Confidence 58999999998755 3333432 2357999999998876422 111113457778899998877 9
Q ss_pred cEEEEec
Q psy9637 70 RRVMMLV 76 (490)
Q Consensus 70 dvIil~v 76 (490)
|+||+++
T Consensus 78 D~Vi~~~ 84 (477)
T 3u95_A 78 DFIINTA 84 (477)
T ss_dssp SEEEECC
T ss_pred CEEEECc
Confidence 9999986
|
| >3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A* | Back alignment and structure |
|---|
Probab=96.45 E-value=0.00069 Score=63.45 Aligned_cols=80 Identities=15% Similarity=0.300 Sum_probs=55.1
Q ss_pred CcEEEEcccHHHHHHHHHH--HHCCCeEE-EEeCChH-HHHH-HHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCC
Q psy9637 5 GDIGLIGLAVMGQNLILNM--NDHGFTVV-AYNRTTA-KVDS-FLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAG 79 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L--~~~G~~V~-v~dr~~~-~~~~-l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~ 79 (490)
.+++|||+|.+|..++..+ .+.|++++ ++|.+|+ +... .. .+.++...+++.++++.. ..|++++++|+.
T Consensus 85 ~~V~IvGaG~lG~aLa~~~~~~~~g~~iVg~~D~dp~~kiG~~~i----~GvpV~~~~dL~~~v~~~-~Id~vIIAvPs~ 159 (212)
T 3keo_A 85 TNVMLVGCGNIGRALLHYRFHDRNKMQISMAFDLDSNDLVGKTTE----DGIPVYGISTINDHLIDS-DIETAILTVPST 159 (212)
T ss_dssp EEEEEECCSHHHHHHTTCCCCTTSSEEEEEEEECTTSTTTTCBCT----TCCBEEEGGGHHHHC-CC-SCCEEEECSCGG
T ss_pred CEEEEECcCHHHHHHHHhhhcccCCeEEEEEEeCCchhccCceeE----CCeEEeCHHHHHHHHHHc-CCCEEEEecCch
Confidence 5799999999999999873 45677766 5799987 6432 11 123444556777777642 489999999995
Q ss_pred chHHHHHHhhc
Q psy9637 80 SAVDDFIDKLV 90 (490)
Q Consensus 80 ~~v~~vl~~l~ 90 (490)
...++.+.+.
T Consensus 160 -~aq~v~d~lv 169 (212)
T 3keo_A 160 -EAQEVADILV 169 (212)
T ss_dssp -GHHHHHHHHH
T ss_pred -hHHHHHHHHH
Confidence 4556665544
|
| >1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A* | Back alignment and structure |
|---|
Probab=96.43 E-value=0.014 Score=58.11 Aligned_cols=73 Identities=8% Similarity=0.121 Sum_probs=48.6
Q ss_pred CCCCCcEEEEcc-cHHHHHHHHHHHHCCC-------eEEEEeCCh--HHHHH----HHHcccC-CCCeeccCCHHHHHhh
Q psy9637 1 MAAKGDIGLIGL-AVMGQNLILNMNDHGF-------TVVAYNRTT--AKVDS----FLANEAK-GTNIIGAHSLEELVKN 65 (490)
Q Consensus 1 M~~~~~IgiIGl-G~MG~~lA~~L~~~G~-------~V~v~dr~~--~~~~~----l~~~g~~-~~~i~~~~s~~e~v~~ 65 (490)
|++.|||.|+|. |.+|.+++..|++.|+ +|+++|+++ ++.+. +...... ...+....++.+.++
T Consensus 1 m~~~mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D~~~~~~~~~g~~~dl~~~~~~~~~di~~~~~~~~a~~- 79 (327)
T 1y7t_A 1 MKAPVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEATDDPKVAFK- 79 (327)
T ss_dssp CCCCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTT-
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEeCCCchhhccchhhhhhcccccccCCeEeccChHHHhC-
Confidence 766689999996 9999999999999996 899999975 22221 2111000 011222345555554
Q ss_pred CCCCcEEEEec
Q psy9637 66 LKKPRRVMMLV 76 (490)
Q Consensus 66 l~~~dvIil~v 76 (490)
++|+||.+.
T Consensus 80 --~~D~Vih~A 88 (327)
T 1y7t_A 80 --DADYALLVG 88 (327)
T ss_dssp --TCSEEEECC
T ss_pred --CCCEEEECC
Confidence 499999875
|
| >1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1 | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0096 Score=59.66 Aligned_cols=98 Identities=10% Similarity=0.037 Sum_probs=60.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHHC-CCeEE-EEeC--ChHHHHHHHHcccC------------------CCCeec--cCCH
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDH-GFTVV-AYNR--TTAKVDSFLANEAK------------------GTNIIG--AHSL 59 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~-G~~V~-v~dr--~~~~~~~l~~~g~~------------------~~~i~~--~~s~ 59 (490)
|+||||+|.|++|+.+++.|.++ +.+|+ +.|+ +++....+.+.... +..+.. ..++
T Consensus 3 ~ikVgI~G~G~iGr~~~R~l~~~~~vevvaI~d~~~~~~~~a~l~~~ds~~g~~~~~~~~~~~~l~v~g~~i~v~~~~d~ 82 (335)
T 1u8f_O 3 KVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKAENGKLVINGNPITIFQERDP 82 (335)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCSSEEEEEECSSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSSG
T ss_pred ceEEEEEccCHHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHHHhhcccccCCCCCceEEcCCeEEECCeEEEEEecCCH
Confidence 46999999999999999998874 56766 4564 67766666542110 001111 1355
Q ss_pred HHHHhhCCCCcEEEEecCCCchHHHHHHhhcccCCCCCEEEcCCCC
Q psy9637 60 EELVKNLKKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNS 105 (490)
Q Consensus 60 ~e~v~~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~s~~ 105 (490)
+++.-.-..+|+||.|+|.... .+.. ..+++.|..+||.|..
T Consensus 83 ~~l~~~~~~vDvV~eatg~~~~-~e~a---~~~l~aGak~V~iSap 124 (335)
T 1u8f_O 83 SKIKWGDAGAEYVVESTGVFTT-MEKA---GAHLQGGAKRVIISAP 124 (335)
T ss_dssp GGCCTTTTTCCEEEECSSSCCS-HHHH---GGGGGGTCSEEEESSC
T ss_pred HHCccccCCCCEEEECCCchhh-HHHH---HHHHhCCCeEEEeccC
Confidence 5542100248999999999744 3333 3456678667777653
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0056 Score=57.38 Aligned_cols=71 Identities=15% Similarity=0.249 Sum_probs=51.0
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHccc-CCCCeeccCCH-HHHHhhCCCCcEEEEecCC
Q psy9637 4 KGDIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEA-KGTNIIGAHSL-EELVKNLKKPRRVMMLVKA 78 (490)
Q Consensus 4 ~~~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~-~~~~i~~~~s~-~e~v~~l~~~dvIil~vp~ 78 (490)
.|+|.|.|. |.+|..+++.|++.|++|++.+|++++.+.+...+. . +. ..|+ +++.+.+..+|+||.+...
T Consensus 21 ~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~---~~-~~Dl~~~~~~~~~~~D~vi~~ag~ 94 (236)
T 3e8x_A 21 GMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPELRERGASD---IV-VANLEEDFSHAFASIDAVVFAAGS 94 (236)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHTTCSE---EE-ECCTTSCCGGGGTTCSEEEECCCC
T ss_pred CCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHHHHHHhCCCce---EE-EcccHHHHHHHHcCCCEEEECCCC
Confidence 368999997 999999999999999999999999998887765433 2 11 1111 2233334457888877654
|
| >1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0052 Score=62.24 Aligned_cols=92 Identities=15% Similarity=0.212 Sum_probs=56.1
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHc-cc-CC---CCeeccCCHHHHHhhCCCCcEEEEecC
Q psy9637 5 GDIGLIG-LAVMGQNLILNMNDHGF-TVVAYNRTTAKVDSFLAN-EA-KG---TNIIGAHSLEELVKNLKKPRRVMMLVK 77 (490)
Q Consensus 5 ~~IgiIG-lG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~-g~-~~---~~i~~~~s~~e~v~~l~~~dvIil~vp 77 (490)
+||+|+| .|.+|..+.+.|.++.. +++..+...+.-+++... +. .+ ..+.. .+ ++..+ .+|+||+|+|
T Consensus 17 ~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~~~~~g~~~~~~~~~~~~~v~~dl~~-~~-~~~~~---~vDvVf~atp 91 (359)
T 1xyg_A 17 IRIGLLGASGYTGAEIVRLLANHPHFQVTLMTADRKAGQSMESVFPHLRAQKLPTLVS-VK-DADFS---TVDAVFCCLP 91 (359)
T ss_dssp EEEEEECCSSHHHHHHHHHHHTCSSEEEEEEBCSTTTTSCHHHHCGGGTTSCCCCCBC-GG-GCCGG---GCSEEEECCC
T ss_pred cEEEEECcCCHHHHHHHHHHHcCCCcEEEEEeCchhcCCCHHHhCchhcCccccccee-cc-hhHhc---CCCEEEEcCC
Confidence 5899999 89999999999998764 777665433221122111 10 00 01111 11 22223 4899999999
Q ss_pred CCchHHHHHHhhcccCCCCCEEEcCCCCC
Q psy9637 78 AGSAVDDFIDKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 78 ~~~~v~~vl~~l~~~l~~g~iiId~s~~~ 106 (490)
.+. ..+.... + +.|..|||.|..+
T Consensus 92 ~~~-s~~~a~~---~-~aG~~VId~sa~~ 115 (359)
T 1xyg_A 92 HGT-TQEIIKE---L-PTALKIVDLSADF 115 (359)
T ss_dssp TTT-HHHHHHT---S-CTTCEEEECSSTT
T ss_pred chh-HHHHHHH---H-hCCCEEEECCccc
Confidence 974 4444333 3 5789999998754
|
| >1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.25 E-value=0.004 Score=62.93 Aligned_cols=94 Identities=15% Similarity=0.227 Sum_probs=57.2
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCC-CeEEEEeCChH-H---HHHHHHcc--------cCCCCeeccCCHHHHHhhCCCCc
Q psy9637 5 GDIGLIG-LAVMGQNLILNMNDHG-FTVVAYNRTTA-K---VDSFLANE--------AKGTNIIGAHSLEELVKNLKKPR 70 (490)
Q Consensus 5 ~~IgiIG-lG~MG~~lA~~L~~~G-~~V~v~dr~~~-~---~~~l~~~g--------~~~~~i~~~~s~~e~v~~l~~~d 70 (490)
+||+|+| .|.+|..+.+.|.++. ++|+..++++. . ........ .....+. ..+++++.+ ..+|
T Consensus 9 ~kV~IiGAtG~iG~~llr~L~~~p~~ev~~i~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~D 85 (354)
T 1ys4_A 9 IKVGVLGATGSVGQRFVQLLADHPMFELTALAASERSAGKKYKDACYWFQDRDIPENIKDMVVI-PTDPKHEEF--EDVD 85 (354)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEECTTTTTSBHHHHSCCCCSSCCCHHHHTCBCE-ESCTTSGGG--TTCC
T ss_pred ceEEEECcCCHHHHHHHHHHhcCCCCEEEEEEcccccccccHHHhcccccccccccCceeeEEE-eCCHHHHhc--CCCC
Confidence 5899999 8999999999998765 57776643321 1 21111000 0000111 124455434 0389
Q ss_pred EEEEecCCCchHHHHHHhhcccCCCCCEEEcCCCC
Q psy9637 71 RVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNS 105 (490)
Q Consensus 71 vIil~vp~~~~v~~vl~~l~~~l~~g~iiId~s~~ 105 (490)
+||+|+|.. ...+....+. ..|..|||.++.
T Consensus 86 vV~~atp~~-~~~~~a~~~~---~aG~~VId~s~~ 116 (354)
T 1ys4_A 86 IVFSALPSD-LAKKFEPEFA---KEGKLIFSNASA 116 (354)
T ss_dssp EEEECCCHH-HHHHHHHHHH---HTTCEEEECCST
T ss_pred EEEECCCch-HHHHHHHHHH---HCCCEEEECCch
Confidence 999999985 4555555443 468889999875
|
| >2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0035 Score=63.34 Aligned_cols=93 Identities=13% Similarity=0.144 Sum_probs=57.5
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHHCC-----C-eEEEEeC--ChHH-HHHHHH-c-ccCCCCeeccCCHHHHHhhCCCCcE
Q psy9637 4 KGDIGLIG-LAVMGQNLILNMNDHG-----F-TVVAYNR--TTAK-VDSFLA-N-EAKGTNIIGAHSLEELVKNLKKPRR 71 (490)
Q Consensus 4 ~~~IgiIG-lG~MG~~lA~~L~~~G-----~-~V~v~dr--~~~~-~~~l~~-~-g~~~~~i~~~~s~~e~v~~l~~~dv 71 (490)
|+||+|+| .|.+|..+.+.|.+++ + +|+.+.+ +..+ ...... . +.....+. ..+.+++ . .+|+
T Consensus 9 m~kVaIvGATG~vG~~llr~L~~~~~~~~~~~ei~~l~s~~~agk~~~~~~~~l~~~~~~~~~-~~~~~~~-~---~~Dv 83 (352)
T 2nqt_A 9 ATKVAVAGASGYAGGEILRLLLGHPAYADGRLRIGALTAATSAGSTLGEHHPHLTPLAHRVVE-PTEAAVL-G---GHDA 83 (352)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHTCHHHHTTSEEEEEEEESSCTTSBGGGTCTTCGGGTTCBCE-ECCHHHH-T---TCSE
T ss_pred CCEEEEECCCCHHHHHHHHHHHcCCCCCCccEEEEEEECCCcCCCchhhhcccccccceeeec-cCCHHHh-c---CCCE
Confidence 46999999 9999999999999887 3 6666642 2211 111000 0 00011111 1233333 2 3899
Q ss_pred EEEecCCCchHHHHHHhhcccCCCCCEEEcCCCCC
Q psy9637 72 VMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 72 Iil~vp~~~~v~~vl~~l~~~l~~g~iiId~s~~~ 106 (490)
||+|+|.+ ...+++..+ ..|..|||.|+..
T Consensus 84 Vf~alg~~-~s~~~~~~~----~~G~~vIDlSa~~ 113 (352)
T 2nqt_A 84 VFLALPHG-HSAVLAQQL----SPETLIIDCGADF 113 (352)
T ss_dssp EEECCTTS-CCHHHHHHS----CTTSEEEECSSTT
T ss_pred EEECCCCc-chHHHHHHH----hCCCEEEEECCCc
Confidence 99999996 455555544 4689999999865
|
| >2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0084 Score=58.20 Aligned_cols=74 Identities=15% Similarity=0.211 Sum_probs=50.9
Q ss_pred CCCCCcEEEEcc-cHHHHHHHHHHHHCC-CeEEEEeCChHHH--HHHHHcccCCCCee--ccCCHHHHHhhCCCCcEEEE
Q psy9637 1 MAAKGDIGLIGL-AVMGQNLILNMNDHG-FTVVAYNRTTAKV--DSFLANEAKGTNII--GAHSLEELVKNLKKPRRVMM 74 (490)
Q Consensus 1 M~~~~~IgiIGl-G~MG~~lA~~L~~~G-~~V~v~dr~~~~~--~~l~~~g~~~~~i~--~~~s~~e~v~~l~~~dvIil 74 (490)
|+.+++|.|.|. |.+|..++..|++.| ++|.+.+|++++. +.+...+.. +. -..+++++.+.++.+|+||.
T Consensus 2 M~~~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~~~~~~~~l~~~~~~---~~~~D~~d~~~l~~~~~~~d~vi~ 78 (299)
T 2wm3_A 2 MVDKKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKAAKELRLQGAE---VVQGDQDDQVIMELALNGAYATFI 78 (299)
T ss_dssp --CCCEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCTTSHHHHHHHHTTCE---EEECCTTCHHHHHHHHTTCSEEEE
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCCCCHHHHHHHHCCCE---EEEecCCCHHHHHHHHhcCCEEEE
Confidence 655578999997 999999999999998 9999999987653 233332221 11 12455555555556899988
Q ss_pred ecC
Q psy9637 75 LVK 77 (490)
Q Consensus 75 ~vp 77 (490)
+..
T Consensus 79 ~a~ 81 (299)
T 2wm3_A 79 VTN 81 (299)
T ss_dssp CCC
T ss_pred eCC
Confidence 764
|
| >2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0043 Score=62.60 Aligned_cols=97 Identities=15% Similarity=0.248 Sum_probs=56.6
Q ss_pred CCCCCcEEEEc-ccHHHHHHHHHHHHCC-CeEEEEe-CChHHHHHHHHcccC---------CCCeecc-CCHHHHHhhCC
Q psy9637 1 MAAKGDIGLIG-LAVMGQNLILNMNDHG-FTVVAYN-RTTAKVDSFLANEAK---------GTNIIGA-HSLEELVKNLK 67 (490)
Q Consensus 1 M~~~~~IgiIG-lG~MG~~lA~~L~~~G-~~V~v~d-r~~~~~~~l~~~g~~---------~~~i~~~-~s~~e~v~~l~ 67 (490)
|..++||||+| .|.+|..+.+.|.++. ++|+... .+...-+.+.+.... ...+... .+++++ .
T Consensus 1 m~~~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~--- 76 (350)
T 2ep5_A 1 MADKIKVSLLGSTGMVGQKMVKMLAKHPYLELVKVSASPSKIGKKYKDAVKWIEQGDIPEEVQDLPIVSTNYEDH-K--- 76 (350)
T ss_dssp -CCCEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECCGGGTTSBHHHHCCCCSSSSCCHHHHTCBEECSSGGGG-T---
T ss_pred CCCCcEEEEECcCCHHHHHHHHHHHhCCCcEEEEEecChhhcCCCHHHhcCcccccccccCCceeEEeeCCHHHh-c---
Confidence 65567999999 8999999999988764 4666654 222211112110000 0011111 133333 3
Q ss_pred CCcEEEEecCCCchHHHHHHhhcccCCCCCEEEcCCCC
Q psy9637 68 KPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNS 105 (490)
Q Consensus 68 ~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~s~~ 105 (490)
.+|+||+|+|.. ...+....+ ++.|..|||.+..
T Consensus 77 ~vDvVf~atp~~-~s~~~a~~~---~~aG~~VId~s~~ 110 (350)
T 2ep5_A 77 DVDVVLSALPNE-LAESIELEL---VKNGKIVVSNASP 110 (350)
T ss_dssp TCSEEEECCCHH-HHHHHHHHH---HHTTCEEEECSST
T ss_pred CCCEEEECCChH-HHHHHHHHH---HHCCCEEEECCcc
Confidence 489999999985 444444443 3468889999864
|
| >2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0084 Score=58.76 Aligned_cols=71 Identities=21% Similarity=0.276 Sum_probs=48.2
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChH-HHHH---HHHcccCCCCeec--cCCHHHHHhhCCCCcEEEEecC
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTA-KVDS---FLANEAKGTNIIG--AHSLEELVKNLKKPRRVMMLVK 77 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~-~~~~---l~~~g~~~~~i~~--~~s~~e~v~~l~~~dvIil~vp 77 (490)
++|.|+|. |.+|..++..|++.|++|++.+|+++ +.+. +...+.. +.. ..+++++.+.++.+|+||.+.+
T Consensus 12 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~l~~~~v~---~v~~Dl~d~~~l~~a~~~~d~vi~~a~ 88 (318)
T 2r6j_A 12 SKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQSLGAI---IVKGELDEHEKLVELMKKVDVVISALA 88 (318)
T ss_dssp CCEEEETTTSTTHHHHHHHHHHTTCCEEEEECTTCSCHHHHHHHHHTTCE---EEECCTTCHHHHHHHHTTCSEEEECCC
T ss_pred CeEEEECCCchHHHHHHHHHHHCCCcEEEEECCCCchhhHHHHhhcCCCE---EEEecCCCHHHHHHHHcCCCEEEECCc
Confidence 48999995 99999999999999999999999874 3222 2222221 111 2345555555556888887765
Q ss_pred C
Q psy9637 78 A 78 (490)
Q Consensus 78 ~ 78 (490)
.
T Consensus 89 ~ 89 (318)
T 2r6j_A 89 F 89 (318)
T ss_dssp G
T ss_pred h
Confidence 3
|
| >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} | Back alignment and structure |
|---|
Probab=96.15 E-value=0.01 Score=57.65 Aligned_cols=72 Identities=19% Similarity=0.242 Sum_probs=50.0
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCCh-------HHHHHHH---HcccCCCCeec--cCCHHHHHhhCCCCc
Q psy9637 4 KGDIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTT-------AKVDSFL---ANEAKGTNIIG--AHSLEELVKNLKKPR 70 (490)
Q Consensus 4 ~~~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~-------~~~~~l~---~~g~~~~~i~~--~~s~~e~v~~l~~~d 70 (490)
|++|.|+|. |.+|..++..|++.|++|++.+|++ ++.+.+. ..+.. +.. ..+++++.+.++.+|
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~l~~~~v~---~v~~D~~d~~~l~~~~~~~d 78 (307)
T 2gas_A 2 ENKILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELIDNYQSLGVI---LLEGDINDHETLVKAIKQVD 78 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHHTCCEEEEECCSCCSSCHHHHHHHHHHHHHTTCE---EEECCTTCHHHHHHHHTTCS
T ss_pred CcEEEEECCCchHHHHHHHHHHhCCCcEEEEECCCcccCChHHHHHHHHHHHhCCCE---EEEeCCCCHHHHHHHHhCCC
Confidence 468999996 9999999999999999999999986 5554332 22211 111 234555555555688
Q ss_pred EEEEecCC
Q psy9637 71 RVMMLVKA 78 (490)
Q Consensus 71 vIil~vp~ 78 (490)
+||.+.+.
T Consensus 79 ~vi~~a~~ 86 (307)
T 2gas_A 79 IVICAAGR 86 (307)
T ss_dssp EEEECSSS
T ss_pred EEEECCcc
Confidence 88877754
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=96.12 E-value=0.003 Score=58.53 Aligned_cols=71 Identities=20% Similarity=0.345 Sum_probs=50.6
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCee-ccCC-HHHHHhhCCCCcEEEEecCCC
Q psy9637 5 GDIGLIG-LAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNII-GAHS-LEELVKNLKKPRRVMMLVKAG 79 (490)
Q Consensus 5 ~~IgiIG-lG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~-~~~s-~~e~v~~l~~~dvIil~vp~~ 79 (490)
|||.|.| .|.+|..++..|+++|++|++.+|++++.+.+ .+.. -+. -..+ .+++.+.++.+|+||.+....
T Consensus 1 M~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~--~~~~--~~~~D~~d~~~~~~~~~~~~d~vi~~ag~~ 74 (219)
T 3dqp_A 1 MKIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQVPQY--NNVK--AVHFDVDWTPEEMAKQLHGMDAIINVSGSG 74 (219)
T ss_dssp CEEEEESTTSHHHHHHHHHHTTSSCEEEEEESSGGGSCCC--TTEE--EEECCTTSCHHHHHTTTTTCSEEEECCCCT
T ss_pred CeEEEECCCCHHHHHHHHHHHHCCCEEEEEECCccchhhc--CCce--EEEecccCCHHHHHHHHcCCCEEEECCcCC
Confidence 4899998 79999999999999999999999998754332 1110 000 1234 666666667788888877653
|
| >4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A | Back alignment and structure |
|---|
Probab=96.11 E-value=0.019 Score=60.49 Aligned_cols=112 Identities=16% Similarity=0.237 Sum_probs=66.8
Q ss_pred CCcEEEEcccHHHHH-HHHHHHHCCCeEEEEeCChH-HHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEe--cCCC
Q psy9637 4 KGDIGLIGLAVMGQN-LILNMNDHGFTVVAYNRTTA-KVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMML--VKAG 79 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~-lA~~L~~~G~~V~v~dr~~~-~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~--vp~~ 79 (490)
+++|-|||+|..|.+ +|+.|.+.|++|+++|..+. ..+.+.+.|.. +..-.+++. +..+|+|+++ +|.+
T Consensus 22 ~~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~~~~~~~~~l~~~gi~---~~~g~~~~~----~~~~d~vV~Spgi~~~ 94 (494)
T 4hv4_A 22 VRHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAPNSVTQHLTALGAQ---IYFHHRPEN----VLDASVVVVSTAISAD 94 (494)
T ss_dssp CCEEEEETTTSTTHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTTCE---EESSCCGGG----GTTCSEEEECTTSCTT
T ss_pred CCEEEEEEEcHhhHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHCCCE---EECCCCHHH----cCCCCEEEECCCCCCC
Confidence 468999999999985 99999999999999997543 45556665542 222223332 2338998876 4443
Q ss_pred ch-HHHHHH---------hhc-ccCCCC-CEEEcCCCCChHHHHHHHHHHHHccc
Q psy9637 80 SA-VDDFID---------KLV-PLLEKG-DIIIDGGNSEYQDTDRRSKALEAKGL 122 (490)
Q Consensus 80 ~~-v~~vl~---------~l~-~~l~~g-~iiId~s~~~~~~~~~~~~~l~~~gi 122 (490)
.+ +....+ +++ ..++.. -|-|-+||+.-.++.-+...+...|.
T Consensus 95 ~p~~~~a~~~gi~v~~~~e~l~~~~~~~~~IaVTGTnGKTTTt~ml~~iL~~~g~ 149 (494)
T 4hv4_A 95 NPEIVAAREARIPVIRRAEMLAELMRYRHGIAVAGTHGKTTTTAMLSSIYAEAGL 149 (494)
T ss_dssp CHHHHHHHHTTCCEEEHHHHHHHHHTTSEEEEEECSSSHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHCCCCEEcHHHHHHHHhcCCCEEEEecCCChHHHHHHHHHHHHhcCC
Confidence 32 222111 122 222222 35566666654444444477777774
|
| >2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=96.11 E-value=0.014 Score=60.79 Aligned_cols=99 Identities=16% Similarity=0.173 Sum_probs=68.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCC-C---eEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCC
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHG-F---TVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAG 79 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G-~---~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~ 79 (490)
++||.|||+|.||+.++..|+++. + .|++.|++... .++.+... .+++-.-|.++
T Consensus 13 ~~rVlIIGaGgVG~~va~lla~~~dv~~~~I~vaD~~~~~-----------------~~~~~~~g----~~~~~~~Vdad 71 (480)
T 2ph5_A 13 KNRFVILGFGCVGQALMPLIFEKFDIKPSQVTIIAAEGTK-----------------VDVAQQYG----VSFKLQQITPQ 71 (480)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHHBCCCGGGEEEEESSCCS-----------------CCHHHHHT----CEEEECCCCTT
T ss_pred CCCEEEECcCHHHHHHHHHHHhCCCCceeEEEEeccchhh-----------------hhHHhhcC----CceeEEeccch
Confidence 368999999999999999999864 4 68888765331 12222221 34444445442
Q ss_pred chHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCC
Q psy9637 80 SAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGV 129 (490)
Q Consensus 80 ~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~v 129 (490)
.+++++..++ +++++||+.+ .+..+..+.+.+.+.|++|+|..+
T Consensus 72 -nv~~~l~aLl---~~~DvVIN~s--~~~~~l~Im~acleaGv~YlDTa~ 115 (480)
T 2ph5_A 72 -NYLEVIGSTL---EENDFLIDVS--IGISSLALIILCNQKGALYINAAT 115 (480)
T ss_dssp -THHHHTGGGC---CTTCEEEECC--SSSCHHHHHHHHHHHTCEEEESSC
T ss_pred -hHHHHHHHHh---cCCCEEEECC--ccccCHHHHHHHHHcCCCEEECCC
Confidence 4555555444 4469999865 455677888899999999999976
|
| >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* | Back alignment and structure |
|---|
Probab=96.10 E-value=0.011 Score=58.71 Aligned_cols=71 Identities=23% Similarity=0.193 Sum_probs=49.0
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCCh----HHHHHHH---HcccCCCCeec--cCCHHHHHhhCC--CCcEE
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTT----AKVDSFL---ANEAKGTNIIG--AHSLEELVKNLK--KPRRV 72 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~----~~~~~l~---~~g~~~~~i~~--~~s~~e~v~~l~--~~dvI 72 (490)
|+|.|+|. |.+|..++..|++.||+|++.+|++ ++.+.+. ..+.. +.. ..+.+++.+.++ .+|+|
T Consensus 11 ~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~l~~~~v~---~~~~Dl~d~~~l~~~~~~~~~d~V 87 (346)
T 3i6i_A 11 GRVLIAGATGFIGQFVATASLDAHRPTYILARPGPRSPSKAKIFKALEDKGAI---IVYGLINEQEAMEKILKEHEIDIV 87 (346)
T ss_dssp CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHHHHTTCE---EEECCTTCHHHHHHHHHHTTCCEE
T ss_pred CeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCCCCChhHHHHHHHHHhCCcE---EEEeecCCHHHHHHHHhhCCCCEE
Confidence 68999997 9999999999999999999999976 4544332 22211 111 234444444444 58888
Q ss_pred EEecCC
Q psy9637 73 MMLVKA 78 (490)
Q Consensus 73 il~vp~ 78 (490)
|.+...
T Consensus 88 i~~a~~ 93 (346)
T 3i6i_A 88 VSTVGG 93 (346)
T ss_dssp EECCCG
T ss_pred EECCch
Confidence 887754
|
| >3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} | Back alignment and structure |
|---|
Probab=96.08 E-value=0.013 Score=57.37 Aligned_cols=73 Identities=18% Similarity=0.160 Sum_probs=48.4
Q ss_pred CCCcEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCCh------HHHHHHH---HcccCCCCeec--cCCHHHHHhhCCCCc
Q psy9637 3 AKGDIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTT------AKVDSFL---ANEAKGTNIIG--AHSLEELVKNLKKPR 70 (490)
Q Consensus 3 ~~~~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~------~~~~~l~---~~g~~~~~i~~--~~s~~e~v~~l~~~d 70 (490)
+||+|.|+|. |.+|..++..|++.|++|++.+|++ ++.+.+. ..+.. +.. ..+++++.+.++.+|
T Consensus 3 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~l~~~~~~~v~---~v~~D~~d~~~l~~a~~~~d 79 (321)
T 3c1o_A 3 HMEKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFRSMGVT---IIEGEMEEHEKMVSVLKQVD 79 (321)
T ss_dssp -CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECCCCTTCCHHHHHHHHHHHHTTCE---EEECCTTCHHHHHHHHTTCS
T ss_pred cccEEEEEcCCchhHHHHHHHHHhCCCcEEEEECCcccccChHHHHHHHHhhcCCcE---EEEecCCCHHHHHHHHcCCC
Confidence 3578999995 9999999999999999999999986 3433322 21211 111 234455555555578
Q ss_pred EEEEecCC
Q psy9637 71 RVMMLVKA 78 (490)
Q Consensus 71 vIil~vp~ 78 (490)
+||.+...
T Consensus 80 ~vi~~a~~ 87 (321)
T 3c1o_A 80 IVISALPF 87 (321)
T ss_dssp EEEECCCG
T ss_pred EEEECCCc
Confidence 88777643
|
| >2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant, oxidoreductase; 2.90A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A | Back alignment and structure |
|---|
Probab=96.04 E-value=0.025 Score=58.14 Aligned_cols=111 Identities=17% Similarity=0.242 Sum_probs=76.0
Q ss_pred CcEEEEcccHHHHHHHHHHHH-CCCeEE-EEeC----------ChHHHHHHHHcccCCCC---eeccCCHHHHHhhCCCC
Q psy9637 5 GDIGLIGLAVMGQNLILNMND-HGFTVV-AYNR----------TTAKVDSFLANEAKGTN---IIGAHSLEELVKNLKKP 69 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~-~G~~V~-v~dr----------~~~~~~~l~~~g~~~~~---i~~~~s~~e~v~~l~~~ 69 (490)
++|.|.|.|+||.+.++.|.+ .|..|+ +.|. +++.+.++.+....-.. .. ..+++++... ++
T Consensus 210 ~~vaVqG~GnVG~~~a~~L~e~~GakvVavsD~~G~i~dp~Gld~~~l~~~~~~~g~l~~y~~a~-~~~~~eil~~--~~ 286 (415)
T 2tmg_A 210 ATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHGTVVTYPKGE-RITNEELLEL--DV 286 (415)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCEEECTTCCCHHHHHHHHHHSSCSTTCSSSE-EECHHHHTTC--SC
T ss_pred CEEEEECCcHHHHHHHHHHHHhcCCEEEEEEeCCCeEECCCCCCHHHHHHHHHhhCCcccCCCce-EcCchhhhcC--CC
Confidence 589999999999999999999 999988 5565 77777777664221000 01 1245565432 48
Q ss_pred cEEEEecCCCchHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccccc
Q psy9637 70 RRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYV 125 (490)
Q Consensus 70 dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~l 125 (490)
|+++-|-.......+-...+ .-++|+...|... +.+..+.+.++|+.|+
T Consensus 287 DIliP~A~~n~i~~~~a~~l-----~ak~V~EgAN~p~--t~~a~~~l~~~Gi~~~ 335 (415)
T 2tmg_A 287 DILVPAALEGAIHAGNAERI-----KAKAVVEGANGPT--TPEADEILSRRGILVV 335 (415)
T ss_dssp SEEEECSSTTSBCHHHHTTC-----CCSEEECCSSSCB--CHHHHHHHHHTTCEEE
T ss_pred cEEEecCCcCccCcccHHHc-----CCeEEEeCCCccc--CHHHHHHHHHCCCEEE
Confidence 99998877654444333333 5689999998653 4555577888998764
|
| >3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O | Back alignment and structure |
|---|
Probab=96.01 E-value=0.019 Score=57.59 Aligned_cols=96 Identities=14% Similarity=0.125 Sum_probs=57.4
Q ss_pred CcEEEEcccHHHHHHHHHHHHC-CCeEEE-EeC--ChHHHHHHHHcccC-------------CC-------Ceecc--CC
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDH-GFTVVA-YNR--TTAKVDSFLANEAK-------------GT-------NIIGA--HS 58 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~-G~~V~v-~dr--~~~~~~~l~~~g~~-------------~~-------~i~~~--~s 58 (490)
+||||+|.|++|+.+++.|.++ +.+|+. .|+ +++....+.+.... +. .+... .+
T Consensus 4 ikVgI~G~GrIGr~l~R~l~~~p~vevvaI~d~~~~~~~~~~ll~yds~~g~~~~~~v~~~~~~~l~~~g~~i~v~~~~d 83 (337)
T 3e5r_O 4 IKIGINGFGRIGRLVARVALQSEDVELVAVNDPFITTDYMTYMFKYDTVHGQWKHSDIKIKDSKTLLLGEKPVTVFGIRN 83 (337)
T ss_dssp EEEEEECCSHHHHHHHHHHHTCSSEEEEEEECSSSCHHHHHHHHHCCTTTCCCCSSCEEESSSSEEEETTEEEEEECCSC
T ss_pred eEEEEECcCHHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHhhcccccCCCCCCCcEEeecCCeeEECCeEEEEEecCC
Confidence 5999999999999999999876 566664 453 55555554421100 00 11112 25
Q ss_pred HHHHHhhCCCCcEEEEecCCCchHHHHHHhhcccCCCCC--EEEcCCC
Q psy9637 59 LEELVKNLKKPRRVMMLVKAGSAVDDFIDKLVPLLEKGD--IIIDGGN 104 (490)
Q Consensus 59 ~~e~v~~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~--iiId~s~ 104 (490)
++++--.-..+|+||.|+|.... .+.... +++.|. +|||.+.
T Consensus 84 p~~l~w~~~~vDvV~eaTg~~~~-~e~a~~---~l~aGak~VVIs~pa 127 (337)
T 3e5r_O 84 PDEIPWAEAGAEYVVESTGVFTD-KEKAAA---HLKGGAKKVVISAPS 127 (337)
T ss_dssp GGGCCHHHHTCSEEEECSSSCCS-HHHHTH---HHHTTCSEEEESSCC
T ss_pred hHHccccccCCCEEEECCCchhh-HHHHHH---HHHcCCCEEEEecCC
Confidence 66541000138999999998744 333332 344566 8998875
|
| >4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major} | Back alignment and structure |
|---|
Probab=95.89 E-value=0.029 Score=56.33 Aligned_cols=103 Identities=9% Similarity=0.065 Sum_probs=64.8
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCC-------eEEEEeCChH--HHH----HHHHcccC-CCCeeccCCHHHHHhhCCCC
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDHGF-------TVVAYNRTTA--KVD----SFLANEAK-GTNIIGAHSLEELVKNLKKP 69 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~G~-------~V~v~dr~~~--~~~----~l~~~g~~-~~~i~~~~s~~e~v~~l~~~ 69 (490)
.||+|+|+ |.+|.+++..|+.... ++.+||.++. +++ ++..-... ..++...+++.+.++. +
T Consensus 25 vKVaViGAaG~IG~~la~~la~~~l~~~~~~~eL~L~Di~~~~~~~~Gva~DL~~~~~~~~~~~~~~~~~~~a~~~---a 101 (345)
T 4h7p_A 25 VKVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIEPALKALAGVEAELEDCAFPLLDKVVVTADPRVAFDG---V 101 (345)
T ss_dssp EEEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTTCTTEEEEEEESCHHHHTTT---C
T ss_pred CEEEEECcCcHHHHHHHHHHHhccccCCCCccEEEEECCCCccccchhhhhhhhhcCccCCCcEEEcCChHHHhCC---C
Confidence 38999996 9999999999998653 7999999864 222 12221110 1123445666666555 9
Q ss_pred cEEEEecCC----Cc-----------hHHHHHHhhcccCCCCCEEEcCCCCChHHHHH
Q psy9637 70 RRVMMLVKA----GS-----------AVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDR 112 (490)
Q Consensus 70 dvIil~vp~----~~-----------~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~ 112 (490)
|+||++--. +. .++++.+.+.++-.++.+|+-.|| |-++.-
T Consensus 102 dvVvi~aG~prkpGmtR~DLl~~Na~I~~~~~~~i~~~a~~~~~vlvvsN--Pvd~~~ 157 (345)
T 4h7p_A 102 AIAIMCGAFPRKAGMERKDLLEMNARIFKEQGEAIAAVAASDCRVVVVGN--PANTNA 157 (345)
T ss_dssp SEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS--SHHHHH
T ss_pred CEEEECCCCCCCCCCCHHHHHHHhHHHHHHHHHHHHhhccCceEEEEeCC--CcchHH
Confidence 999986522 11 133344556565567788887887 455443
|
| >3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A | Back alignment and structure |
|---|
Probab=95.88 E-value=0.021 Score=58.99 Aligned_cols=112 Identities=15% Similarity=0.178 Sum_probs=75.1
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEE-EEeC----------ChHHHHHHHHcccCCCCe--eccCCHHHHHhhCCCCcE
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVV-AYNR----------TTAKVDSFLANEAKGTNI--IGAHSLEELVKNLKKPRR 71 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~-v~dr----------~~~~~~~l~~~g~~~~~i--~~~~s~~e~v~~l~~~dv 71 (490)
++|.|.|.|++|...|+.|.+.|..|+ +.|+ +.+.+.++.+....-... ....+.+++.. + ++|+
T Consensus 236 ~~vaVqGfGnVG~~~a~~L~e~GakvVavsD~~G~i~dp~Gld~~~l~~~~~~~g~i~~y~~a~~i~~~ei~~-~-~~DI 313 (440)
T 3aog_A 236 ARVAIQGFGNVGNAAARAFHDHGARVVAVQDHTGTVYNEAGIDPYDLLRHVQEFGGVRGYPKAEPLPAADFWG-L-PVEF 313 (440)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCEEECTTCCCHHHHHHHHHHTSSSTTCTTSEECCHHHHTT-C-CCSE
T ss_pred CEEEEeccCHHHHHHHHHHHHCCCEEEEEEcCCcEEECCCCCCHHHHHHHHHhcCCcccCCCceEcCchhhhc-C-CCcE
Confidence 589999999999999999999999988 5666 677777766543210000 01124556543 2 4899
Q ss_pred EEEecCCCchHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccccc
Q psy9637 72 VMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYV 125 (490)
Q Consensus 72 Iil~vp~~~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~l 125 (490)
++-|-+......+... .| .-++|+...|... +.+..+.+.++|+.|+
T Consensus 314 lvPcA~~n~i~~~na~----~l-~ak~VvEgAN~p~--t~eA~~iL~~~GI~~~ 360 (440)
T 3aog_A 314 LVPAALEKQITEQNAW----RI-RARIVAEGANGPT--TPAADDILLEKGVLVV 360 (440)
T ss_dssp EEECSSSSCBCTTTGG----GC-CCSEEECCSSSCB--CHHHHHHHHHHTCEEE
T ss_pred EEecCCcCccchhhHH----Hc-CCcEEEecCcccc--CHHHHHHHHHCCCEEE
Confidence 9988765433322222 33 5689999998653 4555677888998775
|
| >1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A | Back alignment and structure |
|---|
Probab=95.86 E-value=0.031 Score=53.49 Aligned_cols=121 Identities=14% Similarity=0.236 Sum_probs=65.5
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHccc-CCCCe--eccCCHHHHHhhCCCCcEEEEecCCCc
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGF-TVVAYNRTTAKVDSFLANEA-KGTNI--IGAHSLEELVKNLKKPRRVMMLVKAGS 80 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~g~-~~~~i--~~~~s~~e~v~~l~~~dvIil~vp~~~ 80 (490)
.+|.|||+|.+|..++.+|+..|. +++++|.+.-....+..... ....+ .-+....+.+..+ .+++-+..++..
T Consensus 29 ~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~-np~~~v~~~~~~- 106 (251)
T 1zud_1 29 SQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQL-NPDIQLTALQQR- 106 (251)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCSEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHH-CTTSEEEEECSC-
T ss_pred CcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCCCcccccCCCCccCChhhCCCHHHHHHHHHHHHH-CCCCEEEEEecc-
Confidence 589999999999999999999997 78899876421111111100 00000 0011222222221 145555555432
Q ss_pred hHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCC
Q psy9637 81 AVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSG 131 (490)
Q Consensus 81 ~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsG 131 (490)
...+-+.+++ ..-|+|||++.. +..-..+.+.+.+.++.++++.+.|
T Consensus 107 ~~~~~~~~~~---~~~DvVi~~~d~-~~~r~~l~~~~~~~~~p~i~~~~~g 153 (251)
T 1zud_1 107 LTGEALKDAV---ARADVVLDCTDN-MATRQEINAACVALNTPLITASAVG 153 (251)
T ss_dssp CCHHHHHHHH---HHCSEEEECCSS-HHHHHHHHHHHHHTTCCEEEEEEEB
T ss_pred CCHHHHHHHH---hcCCEEEECCCC-HHHHHHHHHHHHHhCCCEEEEeccc
Confidence 1122223332 234899998763 3433334466677788888776543
|
| >1up7_A 6-phospho-beta-glucosidase; hydrolase, family4 hydrolase, Na dependent; HET: G6P NAD; 2.4A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 PDB: 1up6_A* 1up4_A | Back alignment and structure |
|---|
Probab=95.77 E-value=0.042 Score=56.61 Aligned_cols=72 Identities=17% Similarity=0.187 Sum_probs=46.7
Q ss_pred CCcEEEEcccHH-HHHHHHHHHH--C---CCeEEEEeCChHHHHHHHHcc---cC-CCCeeccCCHHHHHhhCCCCcEEE
Q psy9637 4 KGDIGLIGLAVM-GQNLILNMND--H---GFTVVAYNRTTAKVDSFLANE---AK-GTNIIGAHSLEELVKNLKKPRRVM 73 (490)
Q Consensus 4 ~~~IgiIGlG~M-G~~lA~~L~~--~---G~~V~v~dr~~~~~~~l~~~g---~~-~~~i~~~~s~~e~v~~l~~~dvIi 73 (490)
++||+|||.|.. +..+...|+. . +.+|++||+++++++...... .. ..++..+++..+.++. +|+||
T Consensus 2 ~~KI~IIGaG~v~~~~l~~~l~~~~~~l~~~el~L~Di~~~~~~~~~~~~~~~~~~~~~v~~t~d~~~al~~---AD~Vi 78 (417)
T 1up7_A 2 HMRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVLISDTFEGAVVD---AKYVI 78 (417)
T ss_dssp CCEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHTTSSEEEECSSHHHHHTT---CSEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHHhcccCCCcCEEEEEeCCHHHHHHHHHHHHHHhhCCeEEEEeCCHHHHhCC---CCEEE
Confidence 479999999985 2222234455 3 568999999998866422110 00 1345556777676666 99999
Q ss_pred EecCC
Q psy9637 74 MLVKA 78 (490)
Q Consensus 74 l~vp~ 78 (490)
++.-.
T Consensus 79 itagv 83 (417)
T 1up7_A 79 FQFRP 83 (417)
T ss_dssp ECCCT
T ss_pred EcCCC
Confidence 99844
|
| >3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.77 E-value=0.048 Score=56.04 Aligned_cols=109 Identities=19% Similarity=0.254 Sum_probs=75.5
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEE-EEeC----------ChHHHHHHHHcccCCCCeec-cCCHHHHHhhCCCCcEE
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVV-AYNR----------TTAKVDSFLANEAKGTNIIG-AHSLEELVKNLKKPRRV 72 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~-v~dr----------~~~~~~~l~~~g~~~~~i~~-~~s~~e~v~~l~~~dvI 72 (490)
++|.|.|.|++|...|+.|.+.|..|+ +.|+ +.+.+.++.+.... +.. .-+..++.. + .+|+.
T Consensus 219 k~vaVqG~GnVG~~~a~~L~~~GakVVavsD~~G~i~dp~Gld~~~l~~~~~~~g~---v~~~~~~~~e~~~-~-~~DVl 293 (419)
T 3aoe_E 219 ARVVVQGLGQVGAAVALHAERLGMRVVAVATSMGGMYAPEGLDVAEVLSAYEATGS---LPRLDLAPEEVFG-L-EAEVL 293 (419)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEEETTEEEECTTCCCHHHHHHHHHHHSS---CSCCCBCTTTGGG-S-SCSEE
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEEEcCCCeEECCCCCCHHHHHHHHHhhCC---cceeeccchhhhc-c-CceEE
Confidence 589999999999999999999999988 7787 78888777664321 110 112233332 1 48999
Q ss_pred EEecCCCchHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccccc
Q psy9637 73 MMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYV 125 (490)
Q Consensus 73 il~vp~~~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~l 125 (490)
+-|-.......+.... + +=++|+...|... +.+..+.+.++|+.|+
T Consensus 294 iP~A~~n~i~~~~A~~----l-~ak~V~EgAN~p~--t~~A~~~L~~~Gi~~~ 339 (419)
T 3aoe_E 294 VLAAREGALDGDRARQ----V-QAQAVVEVANFGL--NPEAEAYLLGKGALVV 339 (419)
T ss_dssp EECSCTTCBCHHHHTT----C-CCSEEEECSTTCB--CHHHHHHHHHHTCEEE
T ss_pred EecccccccccchHhh----C-CceEEEECCCCcC--CHHHHHHHHHCCCEEE
Confidence 9887665443333333 3 3479999998653 4556678899999875
|
| >1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A* | Back alignment and structure |
|---|
Probab=95.69 E-value=0.041 Score=54.41 Aligned_cols=100 Identities=17% Similarity=0.206 Sum_probs=59.8
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCC--eEEEEeC--ChHHHHH----HHHccc---CCCCeeccC-CHHHHHhhCCCCcE
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDHGF--TVVAYNR--TTAKVDS----FLANEA---KGTNIIGAH-SLEELVKNLKKPRR 71 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~G~--~V~v~dr--~~~~~~~----l~~~g~---~~~~i~~~~-s~~e~v~~l~~~dv 71 (490)
|||.|+|. |.+|.+++..|+..|+ ++.++|+ ++++++. +..... ....+...+ ++.+.+ +.+|+
T Consensus 1 mKI~V~GaaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~l~~al---~gaD~ 77 (313)
T 1hye_A 1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRII---DESDV 77 (313)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGGG---TTCSE
T ss_pred CEEEEECCCChhHHHHHHHHHhCCCCCEEEEEcCCCchhhhHHHHHHHHHhHHhcCCCeEEEeCCcchHHHh---CCCCE
Confidence 58999999 9999999999998885 6889999 7665432 221110 011222211 234444 45999
Q ss_pred EEEecCCCc---------------hHHHHHHhhcccCCCCCEEEcCCCCChHHHH
Q psy9637 72 VMMLVKAGS---------------AVDDFIDKLVPLLEKGDIIIDGGNSEYQDTD 111 (490)
Q Consensus 72 Iil~vp~~~---------------~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~ 111 (490)
||.+.-.+. .++++++.+..+- +.+|+..|| |-++.
T Consensus 78 Vi~~Ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~--~~~vlv~SN--Pv~~~ 128 (313)
T 1hye_A 78 VIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEIC--DTKIFVITN--PVDVM 128 (313)
T ss_dssp EEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC--CCEEEECSS--SHHHH
T ss_pred EEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC--CeEEEEecC--cHHHH
Confidence 998873221 1223334444433 667777776 44443
|
| >1ebf_A Homoserine dehydrogenase; dinucleotide, NAD, dimer, oxidoreductase; HET: NAD; 2.30A {Saccharomyces cerevisiae} SCOP: c.2.1.3 d.81.1.2 PDB: 1ebu_A* 1tve_A* 1q7g_A* | Back alignment and structure |
|---|
Probab=95.66 E-value=0.0055 Score=61.99 Aligned_cols=33 Identities=15% Similarity=0.307 Sum_probs=26.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCC----CeEE-EEeCC
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHG----FTVV-AYNRT 36 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G----~~V~-v~dr~ 36 (490)
++||||||+|.||..++..|.++. .+|+ ++|++
T Consensus 4 ~i~vgIiG~G~VG~~~~~~l~~~~~g~~~~vvaV~d~~ 41 (358)
T 1ebf_A 4 VVNVAVIGAGVVGSAFLDQLLAMKSTITYNLVLLAEAE 41 (358)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHCCCSSEEEEEEEECSS
T ss_pred eEEEEEEecCHHHHHHHHHHHhcCCCCCEEEEEEEECC
Confidence 468999999999999999999863 4443 56754
|
| >3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=95.64 E-value=0.0099 Score=54.68 Aligned_cols=35 Identities=20% Similarity=0.407 Sum_probs=31.5
Q ss_pred CCCCCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCCh
Q psy9637 1 MAAKGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTT 37 (490)
Q Consensus 1 M~~~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~ 37 (490)
|+ .+|.|||.|.-|...|..|+++|++|+++|+++
T Consensus 1 Mt--~dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~ 35 (336)
T 3kkj_A 1 MT--VPIAIIGTGIAGLSAAQALTAAGHQVHLFDKSR 35 (336)
T ss_dssp -C--CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CC--CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCC
Confidence 65 479999999999999999999999999999864
|
| >5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A* | Back alignment and structure |
|---|
Probab=95.63 E-value=0.027 Score=56.34 Aligned_cols=103 Identities=14% Similarity=0.097 Sum_probs=62.6
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHHCCC--e-----EEEEeCCh--HHHHH----HHHcccC-CCCeeccCCHHHHHhhCCC
Q psy9637 4 KGDIGLIG-LAVMGQNLILNMNDHGF--T-----VVAYNRTT--AKVDS----FLANEAK-GTNIIGAHSLEELVKNLKK 68 (490)
Q Consensus 4 ~~~IgiIG-lG~MG~~lA~~L~~~G~--~-----V~v~dr~~--~~~~~----l~~~g~~-~~~i~~~~s~~e~v~~l~~ 68 (490)
.+||.|+| +|.+|.+++..|+..|. + +.++|+++ ++++- +...... ...+...++..+.++.
T Consensus 3 ~~kV~V~GaaG~VG~~la~~L~~~~~~~e~~~~~l~L~Di~~~~~~~~g~a~DL~~~~~~~~~~~~~~~~~~~~~~d--- 79 (333)
T 5mdh_A 3 PIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFKD--- 79 (333)
T ss_dssp CEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEEEEEESCHHHHTTT---
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCCCccccCCCEEEEEeCCCccccchhhHhhhHhhhhcccCCEEEcCCcHHHhCC---
Confidence 36899999 79999999999998886 5 99999974 23332 2221100 0123334455554444
Q ss_pred CcEEEEecCCC----c-----------hHHHHHHhhcccCCCCCEEEcCCCCChHHHH
Q psy9637 69 PRRVMMLVKAG----S-----------AVDDFIDKLVPLLEKGDIIIDGGNSEYQDTD 111 (490)
Q Consensus 69 ~dvIil~vp~~----~-----------~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~ 111 (490)
+|+||++--.+ . .++++++.+..+-.++-+|+..|| |-++.
T Consensus 80 aDvVvitAg~prkpG~tR~dll~~N~~i~~~i~~~i~~~~~~~~~vivvsN--Pvd~~ 135 (333)
T 5mdh_A 80 LDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGN--PANTN 135 (333)
T ss_dssp CSEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECSS--SHHHH
T ss_pred CCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCC--chHHH
Confidence 99999875221 1 234455556555444445788887 44443
|
| >2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase; oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus} | Back alignment and structure |
|---|
Probab=95.57 E-value=0.023 Score=58.57 Aligned_cols=112 Identities=12% Similarity=0.147 Sum_probs=67.9
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEE-EEeCCh---------------HHHHHHHHcccCCCCee--ccCCHHHHHhhC
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVV-AYNRTT---------------AKVDSFLANEAKGTNII--GAHSLEELVKNL 66 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~-v~dr~~---------------~~~~~l~~~g~~~~~i~--~~~s~~e~v~~l 66 (490)
++|.|.|.|++|...++.|.+.|..|+ +.|.++ +.+.++.+....-.... ..-+.+++.. +
T Consensus 213 ~~vaVqG~GnVG~~~a~~L~~~GakvVavsD~~~~~~~G~i~d~~Gld~~~l~~~~~~~g~i~~~~~a~~i~~~~~~~-~ 291 (421)
T 2yfq_A 213 AKIAVQGFGNVGTFTVKNIERQGGKVCAIAEWDRNEGNYALYNENGIDFKELLAYKEANKTLIGFPGAERITDEEFWT-K 291 (421)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTCCEEECCBCCSSSCSBCCBCSSCCCHHHHHHHHHHHCC-------------------
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEEEecCCCccceEEECCCCCCHHHHHHHHHhcCCcccCCCceEeCccchhc-C
Confidence 589999999999999999999999988 678773 55555554322100000 0112233332 1
Q ss_pred CCCcEEEEecCCCchHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccccc
Q psy9637 67 KKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYV 125 (490)
Q Consensus 67 ~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~l 125 (490)
++|+++-|-+......+-...+ ..++|+...|.. .+.+..+.+.++|+.|+
T Consensus 292 -~~DIliP~A~~n~i~~~~A~~l-----~ak~VvEgAN~P--~t~ea~~il~~~GI~~~ 342 (421)
T 2yfq_A 292 -EYDIIVPAALENVITGERAKTI-----NAKLVCEAANGP--TTPEGDKVLTERGINLT 342 (421)
T ss_dssp ----CEEECSCSSCSCHHHHTTC-----CCSEEECCSSSC--SCHHHHHHHHHHTCEEE
T ss_pred -CccEEEEcCCcCcCCcccHHHc-----CCeEEEeCCccc--cCHHHHHHHHHCCCEEE
Confidence 3899988877654444444433 578999999865 24555577888898765
|
| >3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=95.51 E-value=0.018 Score=55.49 Aligned_cols=71 Identities=15% Similarity=0.098 Sum_probs=50.9
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHC-CCeEEEEeCChHHHHHHHHcccCCCCee--ccCCHHHHHhhCCCCcEEEEecCC
Q psy9637 5 GDIGLIG-LAVMGQNLILNMNDH-GFTVVAYNRTTAKVDSFLANEAKGTNII--GAHSLEELVKNLKKPRRVMMLVKA 78 (490)
Q Consensus 5 ~~IgiIG-lG~MG~~lA~~L~~~-G~~V~v~dr~~~~~~~l~~~g~~~~~i~--~~~s~~e~v~~l~~~dvIil~vp~ 78 (490)
|+|.|.| .|.+|..++..|.+. |++|++.+|++++.+.+...+.. +. -..+++++.+.++.+|+||.+...
T Consensus 1 M~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~~~~~~~~~~v~---~~~~D~~d~~~l~~~~~~~d~vi~~a~~ 75 (289)
T 3e48_A 1 MNIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKVPDDWRGKVS---VRQLDYFNQESMVEAFKGMDTVVFIPSI 75 (289)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGGGSCGGGBTTBE---EEECCTTCHHHHHHHTTTCSEEEECCCC
T ss_pred CEEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHHHHHHhhhCCCE---EEEcCCCCHHHHHHHHhCCCEEEEeCCC
Confidence 4799999 599999999999998 99999999998865544322211 11 134555565666668888887654
|
| >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=95.46 E-value=0.018 Score=56.75 Aligned_cols=72 Identities=13% Similarity=0.221 Sum_probs=47.7
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCee-ccCCHHHHHhhCCCCcEEEEecC
Q psy9637 4 KGDIGLIG-LAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNII-GAHSLEELVKNLKKPRRVMMLVK 77 (490)
Q Consensus 4 ~~~IgiIG-lG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~-~~~s~~e~v~~l~~~dvIil~vp 77 (490)
+|+|.|.| .|.+|..++..|++.|++|++.+|++++.+.+...+.. -+. -..+.+++.+.++.+|+||-+..
T Consensus 13 ~M~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~l~~~~~~--~~~~Dl~d~~~~~~~~~~~d~vih~a~ 86 (342)
T 2x4g_A 13 HVKYAVLGATGLLGHHAARAIRAAGHDLVLIHRPSSQIQRLAYLEPE--CRVAEMLDHAGLERALRGLDGVIFSAG 86 (342)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECTTSCGGGGGGGCCE--EEECCTTCHHHHHHHTTTCSEEEEC--
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEecChHhhhhhccCCeE--EEEecCCCHHHHHHHHcCCCEEEECCc
Confidence 46899999 59999999999999999999999987655433221111 000 12344445455556788887664
|
| >2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A* | Back alignment and structure |
|---|
Probab=95.36 E-value=0.03 Score=58.00 Aligned_cols=111 Identities=14% Similarity=0.171 Sum_probs=69.2
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC---eEEEEe----CC----hH-HHHHHHH---cccCCCCe-eccCCHHHHHhhCCC
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGF---TVVAYN----RT----TA-KVDSFLA---NEAKGTNI-IGAHSLEELVKNLKK 68 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~---~V~v~d----r~----~~-~~~~l~~---~g~~~~~i-~~~~s~~e~v~~l~~ 68 (490)
.+|.|+|.|.+|.+++..|.+.|. +|+++| |+ .. ..+.+.. ........ ....++.+.+..
T Consensus 187 ~rvlvlGAGgAg~aia~~L~~~G~~~~~I~vvd~~~~R~G~~~~a~~~~~L~~~~~~~a~~~~~~~~~~~L~e~l~~--- 263 (439)
T 2dvm_A 187 ITLALFGAGAAGFATLRILTEAGVKPENVRVVELVNGKPRILTSDLDLEKLFPYRGWLLKKTNGENIEGGPQEALKD--- 263 (439)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCGGGEEEEEEETTEEEECCTTSCHHHHSTTCHHHHTTSCTTCCCSSHHHHHTT---
T ss_pred CEEEEECccHHHHHHHHHHHHcCCCcCeEEEEEccCCCcCccccccchhHHHHHHHHHhhccccccccccHHHHhcc---
Confidence 579999999999999999999998 899999 87 32 1111211 00000000 013467777665
Q ss_pred CcEEEEecCC--CchHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccccc
Q psy9637 69 PRRVMMLVKA--GSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYV 125 (490)
Q Consensus 69 ~dvIil~vp~--~~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~l 125 (490)
+|+||-++|. +...++. ...+.++.+|+|++|-.++... +...+.|...+
T Consensus 264 aDVlInaT~~~~G~~~~e~----v~~m~~~~iVfDLynP~~t~~~---~~A~~~G~~iv 315 (439)
T 2dvm_A 264 ADVLISFTRPGPGVIKPQW----IEKMNEDAIVFPLANPVPEILP---EEAKKAGARIV 315 (439)
T ss_dssp CSEEEECSCCCSSSSCHHH----HTTSCTTCEEEECCSSSCSSCH---HHHHHHTCSEE
T ss_pred CCEEEEcCCCccCCCChHH----HHhcCCCCEEEECCCCCCcchH---HHHHHcCCeEE
Confidence 8999999998 5333322 3346678899999764433322 33334465443
|
| >1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A* | Back alignment and structure |
|---|
Probab=95.35 E-value=0.031 Score=56.03 Aligned_cols=75 Identities=16% Similarity=0.190 Sum_probs=50.5
Q ss_pred CCC-CCcEEEEc-ccHHHHHHHHHHHHCCCeEEEEeCChHHH--HHHHHc-ccCCCCeec---cCCHHHHHhhCCCCcEE
Q psy9637 1 MAA-KGDIGLIG-LAVMGQNLILNMNDHGFTVVAYNRTTAKV--DSFLAN-EAKGTNIIG---AHSLEELVKNLKKPRRV 72 (490)
Q Consensus 1 M~~-~~~IgiIG-lG~MG~~lA~~L~~~G~~V~v~dr~~~~~--~~l~~~-g~~~~~i~~---~~s~~e~v~~l~~~dvI 72 (490)
|+. +|+|.|.| .|.+|..++..|++.|++|++.+|++++. +.+... +. .+.. .++++++.+.++.+|+|
T Consensus 1 M~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~l~~~~~v---~~v~~D~l~d~~~l~~~~~~~d~V 77 (352)
T 1xgk_A 1 MAQQKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEELQAIPNV---TLFQGPLLNNVPLMDTLFEGAHLA 77 (352)
T ss_dssp --CCCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHHHHHHTSTTE---EEEESCCTTCHHHHHHHHTTCSEE
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCChhhHHHHhhcCCc---EEEECCccCCHHHHHHHHhcCCEE
Confidence 543 57899998 59999999999999999999999987654 333321 11 1111 23555555555568999
Q ss_pred EEecCC
Q psy9637 73 MMLVKA 78 (490)
Q Consensus 73 il~vp~ 78 (490)
|.+...
T Consensus 78 i~~a~~ 83 (352)
T 1xgk_A 78 FINTTS 83 (352)
T ss_dssp EECCCS
T ss_pred EEcCCC
Confidence 877643
|
| >3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A* | Back alignment and structure |
|---|
Probab=95.34 E-value=0.052 Score=51.86 Aligned_cols=79 Identities=13% Similarity=0.191 Sum_probs=52.8
Q ss_pred cEEEEc-ccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 6 DIGLIG-LAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 6 ~IgiIG-lG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
+|-|-| .+-+|..+|+.|++.|++|++.||++++.+++.+++.. ...+-.=|.+...+++
T Consensus 4 ~vlVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~~~-------------------~~~~~~Dv~~~~~v~~ 64 (247)
T 3ged_A 4 GVIVTGGGHGIGKQICLDFLEAGDKVCFIDIDEKRSADFAKERPN-------------------LFYFHGDVADPLTLKK 64 (247)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHTTCTT-------------------EEEEECCTTSHHHHHH
T ss_pred EEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCC-------------------EEEEEecCCCHHHHHH
Confidence 344445 67899999999999999999999998887776543211 1111122344456667
Q ss_pred HHHhhcccCCCCCEEEcCC
Q psy9637 85 FIDKLVPLLEKGDIIIDGG 103 (490)
Q Consensus 85 vl~~l~~~l~~g~iiId~s 103 (490)
+++.+...+.+=|++|+..
T Consensus 65 ~v~~~~~~~g~iDiLVNNA 83 (247)
T 3ged_A 65 FVEYAMEKLQRIDVLVNNA 83 (247)
T ss_dssp HHHHHHHHHSCCCEEEECC
T ss_pred HHHHHHHHcCCCCEEEECC
Confidence 7766666555557777754
|
| >1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A* | Back alignment and structure |
|---|
Probab=95.29 E-value=0.056 Score=52.50 Aligned_cols=41 Identities=15% Similarity=0.129 Sum_probs=36.9
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q psy9637 5 GDIGLIG-LAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLA 45 (490)
Q Consensus 5 ~~IgiIG-lG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~ 45 (490)
+++-|+| .|-+|..++..|++.|++|+++||++++.+++.+
T Consensus 120 k~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~~~~~~~l~~ 161 (287)
T 1lu9_A 120 KKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAAD 161 (287)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCcCEEEEEECCHHHHHHHHH
Confidence 5788999 9999999999999999999999999988776654
|
| >2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.28 E-value=0.073 Score=49.48 Aligned_cols=45 Identities=16% Similarity=0.259 Sum_probs=34.5
Q ss_pred CCCCC-cEEEEc-ccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q psy9637 1 MAAKG-DIGLIG-LAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLA 45 (490)
Q Consensus 1 M~~~~-~IgiIG-lG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~ 45 (490)
|+.+. +|-|.| .|.+|..+++.|++.|++|++.+|++++.+.+.+
T Consensus 1 M~~~~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~ 47 (234)
T 2ehd_A 1 MEGMKGAVLITGASRGIGEATARLLHAKGYRVGLMARDEKRLQALAA 47 (234)
T ss_dssp ---CCCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 65443 466665 6899999999999999999999999887766543
|
| >1vm6_A DHPR, dihydrodipicolinate reductase; TM1520, structural genomics, protein structure initiative, PSI, joint center for structu genomics; HET: NAD PG4; 2.27A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 | Back alignment and structure |
|---|
Probab=95.26 E-value=0.068 Score=50.21 Aligned_cols=87 Identities=16% Similarity=0.248 Sum_probs=57.6
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHHCCCeEE-EEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEE-EecCCCc
Q psy9637 4 KGDIGLIGL-AVMGQNLILNMNDHGFTVV-AYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVM-MLVKAGS 80 (490)
Q Consensus 4 ~~~IgiIGl-G~MG~~lA~~L~~~G~~V~-v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIi-l~vp~~~ 80 (490)
.||.+|+|+ |+||+.++....+.|++++ .+|++.+ ..++.+|+|| .+.|.
T Consensus 12 ~~~~~v~Ga~GrMG~~i~~~~~~~~~elv~~id~~~~-------------------------~~l~~~DVvIDFT~P~-- 64 (228)
T 1vm6_A 12 HMKYGIVGYSGRMGQEIQKVFSEKGHELVLKVDVNGV-------------------------EELDSPDVVIDFSSPE-- 64 (228)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEEETTEE-------------------------EECSCCSEEEECSCGG--
T ss_pred cceeEEEEecCHHHHHHHHHHhCCCCEEEEEEcCCCc-------------------------ccccCCCEEEECCCHH--
Confidence 378999997 9999999887777899866 4576431 1112389888 66665
Q ss_pred hHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHc
Q psy9637 81 AVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAK 120 (490)
Q Consensus 81 ~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~ 120 (490)
.+.+.++... ..|.-+|-++|....+..+..+.+.++
T Consensus 65 a~~~~~~~~~---~~g~~~ViGTTG~~~~~~~~l~~~a~~ 101 (228)
T 1vm6_A 65 ALPKTVDLCK---KYRAGLVLGTTALKEEHLQMLRELSKE 101 (228)
T ss_dssp GHHHHHHHHH---HHTCEEEECCCSCCHHHHHHHHHHTTT
T ss_pred HHHHHHHHHH---HcCCCEEEeCCCCCHHHHHHHHHHHhh
Confidence 4555554443 357778888888765554455554433
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A | Back alignment and structure |
|---|
Probab=95.25 E-value=0.082 Score=51.75 Aligned_cols=41 Identities=15% Similarity=0.338 Sum_probs=35.9
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHH
Q psy9637 4 KGDIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFL 44 (490)
Q Consensus 4 ~~~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~ 44 (490)
.++|.|.|. |.+|..++..|++.|++|++.+|++++.+.+.
T Consensus 11 ~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~ 52 (342)
T 1y1p_A 11 GSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQ 52 (342)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH
T ss_pred CCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCcccHHHHH
Confidence 368999986 99999999999999999999999988766543
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=95.23 E-value=0.015 Score=56.74 Aligned_cols=70 Identities=19% Similarity=0.321 Sum_probs=45.6
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCC
Q psy9637 4 KGDIGLIG-LAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKA 78 (490)
Q Consensus 4 ~~~IgiIG-lG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~ 78 (490)
+|+|.|.| .|.+|..++..|+++|++|++.+|++...+ +. +.. -+..--+.+++.+.++.+|+||-+...
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~-~~--~~~--~~~~Dl~~~~~~~~~~~~d~Vih~a~~ 72 (311)
T 3m2p_A 2 SLKIAVTGGTGFLGQYVVESIKNDGNTPIILTRSIGNKA-IN--DYE--YRVSDYTLEDLINQLNDVDAVVHLAAT 72 (311)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCC--------CCE--EEECCCCHHHHHHHTTTCSEEEECCCC
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCCccc-CC--ceE--EEEccccHHHHHHhhcCCCEEEEcccc
Confidence 36899999 699999999999999999999999855444 32 111 001111144444445568888877643
|
| >3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* 3sth_A* | Back alignment and structure |
|---|
Probab=95.23 E-value=0.066 Score=53.87 Aligned_cols=97 Identities=18% Similarity=0.208 Sum_probs=57.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHHC-CCeEEEEe--C-ChHHHHHHHHcccC------------------CCCeecc--CCH
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDH-GFTVVAYN--R-TTAKVDSFLANEAK------------------GTNIIGA--HSL 59 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~-G~~V~v~d--r-~~~~~~~l~~~g~~------------------~~~i~~~--~s~ 59 (490)
|+||||+|.|++|+.+.+.|.++ .++|+..+ + +.+....+.+.... +..+... .++
T Consensus 17 ~ikVgI~G~G~iGr~llR~l~~~p~veivaindp~~~~~~~a~ll~~ds~hg~~~~~v~~~~~~l~v~g~~i~v~~~~dp 96 (354)
T 3cps_A 17 QGTLGINGFGRIGRLVLRACMERNDITVVAINDPFMDVEYMAYLLKYDSVHGNFNGTVEVSGKDLCINGKVVKVFQAKDP 96 (354)
T ss_dssp -CEEEEECCSHHHHHHHHHHHTCSSCEEEEEECTTSCHHHHHHHHHCCTTTCSCSSCEEECC-CEEETTEEEEEECCSCG
T ss_pred ceEEEEECCCHHHHHHHHHHHcCCCeEEEEecCCCCChhHhhhhhcccccCCCCCCcEEEeCCEEEECCeEEEEEecCCh
Confidence 46999999999999999999887 57776554 2 33322233221100 0112122 255
Q ss_pred HHHHhhCCCCcEEEEecCCCchHHHHHHhhcccCCCCC--EEEcCCC
Q psy9637 60 EELVKNLKKPRRVMMLVKAGSAVDDFIDKLVPLLEKGD--IIIDGGN 104 (490)
Q Consensus 60 ~e~v~~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~--iiId~s~ 104 (490)
+++.-.-..+|+||.|+|.... .+... .+++.|. +|||.+.
T Consensus 97 ~~i~w~~~~vDvV~eatg~~~s-~e~a~---~~l~~GakkvVId~pa 139 (354)
T 3cps_A 97 AEIPWGASGAQIVCESTGVFTT-EEKAS---LHLKGGAKKVIISAPP 139 (354)
T ss_dssp GGCCHHHHTCCEEEECSSSCCS-HHHHG---GGGTTTCSEEEESSCC
T ss_pred HHCCcccCCCCEEEECCCchhh-HHHHH---HHHHcCCcEEEEeCCC
Confidence 5431000138999999998743 33333 4566777 9999875
|
| >3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=95.19 E-value=0.07 Score=56.62 Aligned_cols=113 Identities=17% Similarity=0.195 Sum_probs=67.4
Q ss_pred CCcEEEEcccHHHHH-HHHHHHHCCCeEEEEeCC--hHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEe--cCC
Q psy9637 4 KGDIGLIGLAVMGQN-LILNMNDHGFTVVAYNRT--TAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMML--VKA 78 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~-lA~~L~~~G~~V~v~dr~--~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~--vp~ 78 (490)
.++|-|||.|..|.+ +|+-|.+.|++|+++|.. +...+.+.+.|.. +..-.+++.+.. .+|+|+.+ +|.
T Consensus 19 ~~~i~~iGiGg~Gms~lA~~l~~~G~~V~~sD~~~~~~~~~~L~~~gi~---~~~G~~~~~~~~---~~d~vV~Spgi~~ 92 (524)
T 3hn7_A 19 GMHIHILGICGTFMGSLALLARALGHTVTGSDANIYPPMSTQLEQAGVT---IEEGYLIAHLQP---APDLVVVGNAMKR 92 (524)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCCTTHHHHHHHTTCE---EEESCCGGGGCS---CCSEEEECTTCCT
T ss_pred CCEEEEEEecHhhHHHHHHHHHhCCCEEEEECCCCCcHHHHHHHHCCCE---EECCCCHHHcCC---CCCEEEECCCcCC
Confidence 368999999999985 788899999999999986 3455667666543 222234444323 37988875 444
Q ss_pred Cch-HHHHHH---------hhc-ccCCCC--CEEEcCCCCChHHHHHHHHHHHHccc
Q psy9637 79 GSA-VDDFID---------KLV-PLLEKG--DIIIDGGNSEYQDTDRRSKALEAKGL 122 (490)
Q Consensus 79 ~~~-v~~vl~---------~l~-~~l~~g--~iiId~s~~~~~~~~~~~~~l~~~gi 122 (490)
+.+ +....+ +++ ..+.+. -|-|-+||+.-.++.-+...+...|.
T Consensus 93 ~~p~l~~a~~~gi~v~~~~e~l~~~~~~~~~vIaVTGTnGKTTTt~li~~iL~~~G~ 149 (524)
T 3hn7_A 93 GMDVIEYMLDTGLRYTSGPQFLSEQVLQSRHVIAVAGTHGKTTTTTMLAWILHYAGI 149 (524)
T ss_dssp TSHHHHHHHHHTCCEEEHHHHHHHHTGGGSEEEEEECSSCHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHCCCcEEEHHHHHHHHHhccCcEEEEECCCCHHHHHHHHHHHHHHcCC
Confidence 432 222221 222 222222 35566666654444444466776664
|
| >1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A* | Back alignment and structure |
|---|
Probab=95.18 E-value=0.027 Score=59.86 Aligned_cols=123 Identities=13% Similarity=0.151 Sum_probs=74.6
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHcccC-CCCe--eccCCHHHHHhhCCCCcEEEEecCCCc
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGF-TVVAYNRTTAKVDSFLANEAK-GTNI--IGAHSLEELVKNLKKPRRVMMLVKAGS 80 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~g~~-~~~i--~~~~s~~e~v~~l~~~dvIil~vp~~~ 80 (490)
.+|.|||+|..|..++.+|+..|. +++++|.+.=....+...... ...+ .-+....+.+..+ .|++-+...+.
T Consensus 33 ~~VlvvG~GGlGseiak~La~aGVg~itlvD~D~Ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~l-Np~v~v~~~~~-- 109 (531)
T 1tt5_A 33 AHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEAAMEFLQEL-NSDVSGSFVEE-- 109 (531)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCSEEEEECCCBBCHHHHHHCTTCCGGGBTSBHHHHHHHHHHTT-CTTSBCCEESS--
T ss_pred CeEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEechhhcccCccCChhhcCcHHHHHHHHHHHHh-CCCCeEEEeCC--
Confidence 589999999999999999999997 789999775444444332110 0000 0122233333333 24555555554
Q ss_pred hHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCC
Q psy9637 81 AVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSG 131 (490)
Q Consensus 81 ~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsG 131 (490)
.+..+++.....+..=++|||+.- .+..-..+.+.+...++.|+++.+.|
T Consensus 110 ~~~~~~~~~~~~~~~~DvVi~~~d-~~~~r~~ln~~c~~~~iplI~~~~~G 159 (531)
T 1tt5_A 110 SPENLLDNDPSFFCRFTVVVATQL-PESTSLRLADVLWNSQIPLLICRTYG 159 (531)
T ss_dssp CHHHHHHSCGGGGGGCSEEEEESC-CHHHHHHHHHHHHHTTCCEEEEEEET
T ss_pred CcchhhhhhHHHhcCCCEEEEeCC-CHHHHHHHHHHHHHcCCCEEEEEecC
Confidence 344444333344555689999854 33444444477778888888886554
|
| >4dpl_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; HET: NAP; 1.90A {Sulfolobus tokodaii} PDB: 4dpk_A* 4dpm_A* | Back alignment and structure |
|---|
Probab=95.16 E-value=0.014 Score=58.92 Aligned_cols=97 Identities=10% Similarity=0.170 Sum_probs=55.6
Q ss_pred CCCCCcEEEEc-ccHHHHHHHHHHHHCC-CeEEEE-eCCh--HHHHHHHHc--------ccCCCCeeccCCHHHHHhhCC
Q psy9637 1 MAAKGDIGLIG-LAVMGQNLILNMNDHG-FTVVAY-NRTT--AKVDSFLAN--------EAKGTNIIGAHSLEELVKNLK 67 (490)
Q Consensus 1 M~~~~~IgiIG-lG~MG~~lA~~L~~~G-~~V~v~-dr~~--~~~~~l~~~--------g~~~~~i~~~~s~~e~v~~l~ 67 (490)
|++++|||||| .|..|.-|.+.|.++- .++... .++. .++...... +.....+. ..+.++ ++
T Consensus 4 M~~~~kVaIvGATGyvG~eLlrlL~~hP~~el~~l~S~~saGk~~~~~~p~~~~~~~~~~~~~~~v~-~~~~~~----~~ 78 (359)
T 4dpl_A 4 MRRTLKAAILGATGLVGIEYVRMLSNHPYIKPAYLAGKGSVGKPYGEVVRWQTVGQVPKEIADMEIK-PTDPKL----MD 78 (359)
T ss_dssp --CCEEEEETTTTSTTHHHHHHHHTTCSSEEEEEEEESTTTTSBHHHHCCCCSSSCCCHHHHTCBCE-ECCGGG----CT
T ss_pred CCCCCeEEEECCCCHHHHHHHHHHHhCCCceEEEEECchhcCCChhHhcccccccccccccccceEE-eCCHHH----hc
Confidence 33446899999 6999999999887654 245433 3332 112211000 00011111 123333 23
Q ss_pred CCcEEEEecCCCchHHHHHHhhcccCCCCCEEEcCCCCC
Q psy9637 68 KPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 68 ~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~s~~~ 106 (490)
.+|+||+|+|.+ ...+....+ ++.|..|||.|+-+
T Consensus 79 ~vDvvf~a~p~~-~s~~~a~~~---~~~G~~vIDlSa~~ 113 (359)
T 4dpl_A 79 DVDIIFSPLPQG-AAGPVEEQF---AKEGFPVISNSPDH 113 (359)
T ss_dssp TCCEEEECCCTT-THHHHHHHH---HHTTCEEEECSSTT
T ss_pred CCCEEEECCChH-HHHHHHHHH---HHCCCEEEEcCCCc
Confidence 489999999997 445555544 34789999999854
|
| >4dpk_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; 2.05A {Sulfolobus tokodaii} PDB: 4dpm_A* | Back alignment and structure |
|---|
Probab=95.16 E-value=0.014 Score=58.92 Aligned_cols=97 Identities=10% Similarity=0.170 Sum_probs=55.6
Q ss_pred CCCCCcEEEEc-ccHHHHHHHHHHHHCC-CeEEEE-eCCh--HHHHHHHHc--------ccCCCCeeccCCHHHHHhhCC
Q psy9637 1 MAAKGDIGLIG-LAVMGQNLILNMNDHG-FTVVAY-NRTT--AKVDSFLAN--------EAKGTNIIGAHSLEELVKNLK 67 (490)
Q Consensus 1 M~~~~~IgiIG-lG~MG~~lA~~L~~~G-~~V~v~-dr~~--~~~~~l~~~--------g~~~~~i~~~~s~~e~v~~l~ 67 (490)
|++++|||||| .|..|.-|.+.|.++- .++... .++. .++...... +.....+. ..+.++ ++
T Consensus 4 M~~~~kVaIvGATGyvG~eLlrlL~~hP~~el~~l~S~~saGk~~~~~~p~~~~~~~~~~~~~~~v~-~~~~~~----~~ 78 (359)
T 4dpk_A 4 MRRTLKAAILGATGLVGIEYVRMLSNHPYIKPAYLAGKGSVGKPYGEVVRWQTVGQVPKEIADMEIK-PTDPKL----MD 78 (359)
T ss_dssp --CCEEEEETTTTSTTHHHHHHHHTTCSSEEEEEEEESTTTTSBHHHHCCCCSSSCCCHHHHTCBCE-ECCGGG----CT
T ss_pred CCCCCeEEEECCCCHHHHHHHHHHHhCCCceEEEEECchhcCCChhHhcccccccccccccccceEE-eCCHHH----hc
Confidence 33446899999 6999999999887654 245433 3332 112211000 00011111 123333 23
Q ss_pred CCcEEEEecCCCchHHHHHHhhcccCCCCCEEEcCCCCC
Q psy9637 68 KPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 68 ~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~s~~~ 106 (490)
.+|+||+|+|.+ ...+....+ ++.|..|||.|+-+
T Consensus 79 ~vDvvf~a~p~~-~s~~~a~~~---~~~G~~vIDlSa~~ 113 (359)
T 4dpk_A 79 DVDIIFSPLPQG-AAGPVEEQF---AKEGFPVISNSPDH 113 (359)
T ss_dssp TCCEEEECCCTT-THHHHHHHH---HHTTCEEEECSSTT
T ss_pred CCCEEEECCChH-HHHHHHHHH---HHCCCEEEEcCCCc
Confidence 489999999997 445555544 34789999999854
|
| >2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes} | Back alignment and structure |
|---|
Probab=95.14 E-value=0.0098 Score=60.49 Aligned_cols=98 Identities=15% Similarity=0.150 Sum_probs=67.0
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-eEEEEeCCh-------HHHHHHHHcccCC-CCeeccCCHHHHHhhCCCCcEEEEe
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGF-TVVAYNRTT-------AKVDSFLANEAKG-TNIIGAHSLEELVKNLKKPRRVMML 75 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~-------~~~~~l~~~g~~~-~~i~~~~s~~e~v~~l~~~dvIil~ 75 (490)
.||-|+|.|..|.++|+.+...|. +|+++|++- +.+..+.+..+.. .......+++|+++. +|++|=+
T Consensus 189 ~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~Gli~~~R~~~L~~~k~~fa~~~~~~~~~~~L~eav~~---ADV~IG~ 265 (398)
T 2a9f_A 189 VSIVVNGGGSAGLSITRKLLAAGATKVTVVDKFGIINEQEAAQLAPHHLDIAKVTNREFKSGTLEDALEG---ADIFIGV 265 (398)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTCCCSCCC---CHHHHHSCTTCCCSCSHHHHT---TCSEEEC
T ss_pred cEEEEECCCHHHHHHHHHHHHcCCCeEEEEECCCcccCCccccchHHHHHHhhccCcccchhhHHHHhcc---CCEEEec
Confidence 589999999999999999999999 999999862 1122211111100 001124578898887 8998877
Q ss_pred cCCCchHHHHHHhhcccCCCCCEEEcCCCCChHH
Q psy9637 76 VKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQD 109 (490)
Q Consensus 76 vp~~~~v~~vl~~l~~~l~~g~iiId~s~~~~~~ 109 (490)
..++..++++++. +.++.||+++||-.|+-
T Consensus 266 Sapgl~T~EmVk~----Ma~~pIIfalsNPt~E~ 295 (398)
T 2a9f_A 266 SAPGVLKAEWISK----MAARPVIFAMANPIPEI 295 (398)
T ss_dssp CSTTCCCHHHHHT----SCSSCEEEECCSSSCSS
T ss_pred CCCCCCCHHHHHh----hCCCCEEEECCCCCccC
Confidence 6555556666665 45899999999976543
|
| >4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* | Back alignment and structure |
|---|
Probab=95.13 E-value=0.016 Score=61.96 Aligned_cols=93 Identities=13% Similarity=0.150 Sum_probs=62.2
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeec-cCCHHHHH-hhCCCCcEEEEecCCCchH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIG-AHSLEELV-KNLKKPRRVMMLVKAGSAV 82 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~-~~s~~e~v-~~l~~~dvIil~vp~~~~v 82 (490)
++|.|+|+|++|..+|+.|.+.|++|++.|.++++++.+. .. +.. .++.+.+. ..++++|.++++++++ ..
T Consensus 349 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~-~~-----i~gD~t~~~~L~~agi~~ad~vi~~~~~d-~~ 421 (565)
T 4gx0_A 349 ELIFIIGHGRIGCAAAAFLDRKPVPFILIDRQESPVCNDH-VV-----VYGDATVGQTLRQAGIDRASGIIVTTNDD-ST 421 (565)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCSSCCSS-CE-----EESCSSSSTHHHHHTTTSCSEEEECCSCH-HH
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECChHHHhhcC-CE-----EEeCCCCHHHHHhcCccccCEEEEECCCc-hH
Confidence 5799999999999999999999999999999998766542 11 111 12222221 2466799999999885 33
Q ss_pred HHHHHhhcccCCCC-CEEEcCCC
Q psy9637 83 DDFIDKLVPLLEKG-DIIIDGGN 104 (490)
Q Consensus 83 ~~vl~~l~~~l~~g-~iiId~s~ 104 (490)
.-.+..++..+.+. .+|.-..+
T Consensus 422 ni~~~~~ak~l~~~~~iiar~~~ 444 (565)
T 4gx0_A 422 NIFLTLACRHLHSHIRIVARANG 444 (565)
T ss_dssp HHHHHHHHHHHCSSSEEEEEESS
T ss_pred HHHHHHHHHHHCCCCEEEEEECC
Confidence 33333444455555 45554444
|
| >1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A* | Back alignment and structure |
|---|
Probab=95.10 E-value=0.047 Score=55.27 Aligned_cols=92 Identities=21% Similarity=0.279 Sum_probs=53.5
Q ss_pred CcEEEEc-ccHHHHHHHH-HHHHCCC---eEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCC
Q psy9637 5 GDIGLIG-LAVMGQNLIL-NMNDHGF---TVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAG 79 (490)
Q Consensus 5 ~~IgiIG-lG~MG~~lA~-~L~~~G~---~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~ 79 (490)
+||||+| .|.+|..+.+ .|.++.+ .+..+..+. .-+.+.........+....+++++ +. +|+||.|+|..
T Consensus 2 ~kVaIvGAtG~vG~~llr~ll~~~~~~~v~i~~~~~~s-~G~~v~~~~g~~i~~~~~~~~~~~-~~---~DvVf~a~g~~ 76 (367)
T 1t4b_A 2 QNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQ-LGQAAPSFGGTTGTLQDAFDLEAL-KA---LDIIVTCQGGD 76 (367)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSS-TTSBCCGGGTCCCBCEETTCHHHH-HT---CSEEEECSCHH
T ss_pred cEEEEECCCCHHHHHHHHHHHhcCCCCeEEEEEEEeCC-CCCCccccCCCceEEEecCChHHh-cC---CCEEEECCCch
Confidence 6899999 9999999999 4555554 334443321 101110011111122223345554 44 89999999975
Q ss_pred chHHHHHHhhcccCCCCC--EEEcCCCC
Q psy9637 80 SAVDDFIDKLVPLLEKGD--IIIDGGNS 105 (490)
Q Consensus 80 ~~v~~vl~~l~~~l~~g~--iiId~s~~ 105 (490)
...+....+. +.|. +|||.++.
T Consensus 77 -~s~~~a~~~~---~~G~k~vVID~ss~ 100 (367)
T 1t4b_A 77 -YTNEIYPKLR---ESGWQGYWIDAASS 100 (367)
T ss_dssp -HHHHHHHHHH---HTTCCCEEEECSST
T ss_pred -hHHHHHHHHH---HCCCCEEEEcCChh
Confidence 4555555443 3464 99999875
|
| >1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=95.07 E-value=0.058 Score=54.21 Aligned_cols=93 Identities=23% Similarity=0.233 Sum_probs=57.8
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHH---cccCCCCeeccCCHHHHHhhCCCCcEEEEecCC
Q psy9637 4 KGDIGLIG-LAVMGQNLILNMNDHGF-TVVAYNRTTAKVDSFLA---NEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKA 78 (490)
Q Consensus 4 ~~~IgiIG-lG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~---~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~ 78 (490)
|.|||||| .|..|.-|.+.|.++-. ++....-....-+.+.+ .......+.. .+++++.+. +|++|+|+|.
T Consensus 13 ~~~V~IvGAtG~vG~ellrlL~~hP~~el~~l~S~~~aG~~~~~~~p~~~~~l~~~~-~~~~~~~~~---~Dvvf~alp~ 88 (351)
T 1vkn_A 13 MIRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPSTLENSILSE-FDPEKVSKN---CDVLFTALPA 88 (351)
T ss_dssp CEEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHHHHCGGGCCCCBCBC-CCHHHHHHH---CSEEEECCST
T ss_pred eeEEEEECCCCHHHHHHHHHHHcCCCcEEEEEeCcccccCChHHhChhhccCceEEe-CCHHHhhcC---CCEEEECCCc
Confidence 46899997 59999999999998753 55554422211111111 0001112222 356666555 8999999999
Q ss_pred CchHHHHHHhhcccCCCCCEEEcCCCCC
Q psy9637 79 GSAVDDFIDKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 79 ~~~v~~vl~~l~~~l~~g~iiId~s~~~ 106 (490)
+ ...+.. +.+ .|..|||.|+.+
T Consensus 89 ~-~s~~~~----~~~-~g~~VIDlSsdf 110 (351)
T 1vkn_A 89 G-ASYDLV----REL-KGVKIIDLGADF 110 (351)
T ss_dssp T-HHHHHH----TTC-CSCEEEESSSTT
T ss_pred H-HHHHHH----HHh-CCCEEEECChhh
Confidence 7 444443 444 799999999864
|
| >4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens} | Back alignment and structure |
|---|
Probab=95.07 E-value=0.015 Score=58.43 Aligned_cols=34 Identities=32% Similarity=0.619 Sum_probs=31.8
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTA 38 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~ 38 (490)
|||.|||.|..|..+|..|+++|++|+++++++.
T Consensus 2 m~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~~~ 35 (412)
T 4hb9_A 2 MHVGIIGAGIGGTCLAHGLRKHGIKVTIYERNSA 35 (412)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCS
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 6999999999999999999999999999998653
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
Probab=94.99 E-value=0.021 Score=54.99 Aligned_cols=38 Identities=21% Similarity=0.346 Sum_probs=33.9
Q ss_pred CCCCCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHH
Q psy9637 1 MAAKGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAK 39 (490)
Q Consensus 1 M~~~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~ 39 (490)
|+ +|+|.|.|.|.+|..++..|+++|++|++.+|++++
T Consensus 1 M~-~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~ 38 (286)
T 3gpi_A 1 MS-LSKILIAGCGDLGLELARRLTAQGHEVTGLRRSAQP 38 (286)
T ss_dssp -C-CCCEEEECCSHHHHHHHHHHHHTTCCEEEEECTTSC
T ss_pred CC-CCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCccc
Confidence 64 468999999999999999999999999999998764
|
| >7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A* | Back alignment and structure |
|---|
Probab=94.99 E-value=0.055 Score=54.83 Aligned_cols=107 Identities=9% Similarity=0.081 Sum_probs=61.6
Q ss_pred CCCCCcEEEEc-ccHHHHHHHHHHHHCCC-----eEEEEeCCh----HHHHHHHH---cccCC--CCeeccCCHHHHHhh
Q psy9637 1 MAAKGDIGLIG-LAVMGQNLILNMNDHGF-----TVVAYNRTT----AKVDSFLA---NEAKG--TNIIGAHSLEELVKN 65 (490)
Q Consensus 1 M~~~~~IgiIG-lG~MG~~lA~~L~~~G~-----~V~v~dr~~----~~~~~l~~---~g~~~--~~i~~~~s~~e~v~~ 65 (490)
|+..+||+||| .|.+|.+++..|+..+. +|.++|.+. ++++-..- ..... .++...++..+.++.
T Consensus 29 ~~~~~KV~ViGAaG~VG~~la~~l~~~~l~~e~~~l~L~d~d~~~~~~~~~G~amDL~h~~~p~~~~v~i~~~~y~~~~d 108 (375)
T 7mdh_A 29 WKKLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEVFED 108 (375)
T ss_dssp CCCCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTT
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHcCCcCCCCceeEEEecCccchhhhhHHHHHhHHhhhhhhcCCcEEecCCHHHhCC
Confidence 44457899999 79999999999998875 276654432 22332211 11110 123334444444444
Q ss_pred CCCCcEEEEecCCC----ch-----------HHHHHHhhcccCCCCCEEEcCCCCChHHHHH
Q psy9637 66 LKKPRRVMMLVKAG----SA-----------VDDFIDKLVPLLEKGDIIIDGGNSEYQDTDR 112 (490)
Q Consensus 66 l~~~dvIil~vp~~----~~-----------v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~ 112 (490)
+|+||++--.+ .. ++++...+.++..++.+|+-.|| |-++.-
T Consensus 109 ---aDvVVitag~prkpG~tR~DLl~~N~~I~k~i~~~i~~~a~p~~ivlVvsN--PvD~~t 165 (375)
T 7mdh_A 109 ---VDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGN--PCNTNA 165 (375)
T ss_dssp ---CSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS--SHHHHH
T ss_pred ---CCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecC--chhHHH
Confidence 99999864221 11 22333445554467788888887 455543
|
| >1r0k_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; NADPH dependent, fosmidomycin, non- mevalonate pathway, oxidoreductase; 1.91A {Zymomonas mobilis} SCOP: a.69.3.1 c.2.1.3 d.81.1.3 PDB: 1r0l_A* | Back alignment and structure |
|---|
Probab=94.98 E-value=0.16 Score=51.66 Aligned_cols=117 Identities=13% Similarity=0.191 Sum_probs=67.5
Q ss_pred CCCCCcEEEEcc-cHHHHHHHHHHHHCC--CeEEE--EeCChHHHHHHHHcccCCCCeec--------------------
Q psy9637 1 MAAKGDIGLIGL-AVMGQNLILNMNDHG--FTVVA--YNRTTAKVDSFLANEAKGTNIIG-------------------- 55 (490)
Q Consensus 1 M~~~~~IgiIGl-G~MG~~lA~~L~~~G--~~V~v--~dr~~~~~~~l~~~g~~~~~i~~-------------------- 55 (490)
|+.|.||+|+|+ |.+|......+.++. ++|.+ .+++.+++.+...+.. ...+..
T Consensus 1 m~~m~rI~ILGsTGSIG~~~l~vi~~~p~~~~v~al~ag~ni~~l~~~~~~f~-~~~v~v~d~~~~~~l~~~l~~~~~~v 79 (388)
T 1r0k_A 1 MSQPRTVTVLGATGSIGHSTLDLIERNLDRYQVIALTANRNVKDLADAAKRTN-AKRAVIADPSLYNDLKEALAGSSVEA 79 (388)
T ss_dssp -CCCEEEEEETTTSHHHHHHHHHHHHTGGGEEEEEEEESSCHHHHHHHHHHTT-CSEEEESCGGGHHHHHHHTTTCSSEE
T ss_pred CCCceEEEEECCCeEeHHHHHHHHHhCcCcEEEEEEEcCCCHHHHHHHHHHcC-CcEEEEcChHHHHHHHHHhccCCcEE
Confidence 666678999999 999999999888863 66663 5888887766554321 111111
Q ss_pred ---cCCHHHHHhhCCCCcEEEEecCCCchHHHHHHhhcccCCCCCEEEcCCCCCh-HHHHHHHHHHHHccccc
Q psy9637 56 ---AHSLEELVKNLKKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEY-QDTDRRSKALEAKGLLY 124 (490)
Q Consensus 56 ---~~s~~e~v~~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~s~~~~-~~~~~~~~~l~~~gi~~ 124 (490)
.+.+.++++ .+ .|+|+.+++.....+.++. .++.|+.|+-.....- ..-..+.+.++++|+.+
T Consensus 80 ~~g~~~~~el~~-~~-iDvVV~ai~G~aGl~ptla----Ai~aGK~VvlANKE~lv~~G~~l~~~A~~~gv~l 146 (388)
T 1r0k_A 80 AAGADALVEAAM-MG-ADWTMAAIIGCAGLKATLA----AIRKGKTVALANKESLVSAGGLMIDAVREHGTTL 146 (388)
T ss_dssp EESHHHHHHHHT-SC-CSEEEECCCSGGGHHHHHH----HHHTTSEEEECCSHHHHTTHHHHHHHHHHHTCEE
T ss_pred EeCccHHHHHHc-CC-CCEEEEeCCCHHHHHHHHH----HHHCCCEEEEeCcHHHHhhHHHHHHHHHHcCCEE
Confidence 111223333 34 7999999876444444433 3456777776543110 11122224455567766
|
| >1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A* | Back alignment and structure |
|---|
Probab=94.94 E-value=0.058 Score=53.19 Aligned_cols=37 Identities=19% Similarity=0.341 Sum_probs=31.8
Q ss_pred CCCCCcEEEEc-ccHHHHHHHHHHHHC--CCeEEEEeCCh
Q psy9637 1 MAAKGDIGLIG-LAVMGQNLILNMNDH--GFTVVAYNRTT 37 (490)
Q Consensus 1 M~~~~~IgiIG-lG~MG~~lA~~L~~~--G~~V~v~dr~~ 37 (490)
|+.||+|.|.| .|.+|..++..|++. |++|++.+|++
T Consensus 1 Ms~m~~vlVTGatG~iG~~l~~~L~~~~~g~~V~~~~r~~ 40 (348)
T 1oc2_A 1 MSQFKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLT 40 (348)
T ss_dssp --CCSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCC
T ss_pred CCcCcEEEEeCCccHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence 76677999998 699999999999998 89999999874
|
| >1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* | Back alignment and structure |
|---|
Probab=94.90 E-value=0.072 Score=49.61 Aligned_cols=72 Identities=13% Similarity=0.167 Sum_probs=49.7
Q ss_pred CCCcEEEEc-ccHHHHHHHHHHHHC--CCeEEEEeCChHHHHHHHHcccCCCCeec--cCCHHHHHhhCCCCcEEEEecC
Q psy9637 3 AKGDIGLIG-LAVMGQNLILNMNDH--GFTVVAYNRTTAKVDSFLANEAKGTNIIG--AHSLEELVKNLKKPRRVMMLVK 77 (490)
Q Consensus 3 ~~~~IgiIG-lG~MG~~lA~~L~~~--G~~V~v~dr~~~~~~~l~~~g~~~~~i~~--~~s~~e~v~~l~~~dvIil~vp 77 (490)
++++|.|.| .|.+|..+++.|+++ |++|++.+|++++.+.+. .+. .+.. ..+.+++.+.++.+|+||.+..
T Consensus 3 ~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~~~~~~~~~-~~~---~~~~~D~~d~~~~~~~~~~~d~vi~~a~ 78 (253)
T 1xq6_A 3 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIG-GEA---DVFIGDITDADSINPAFQGIDALVILTS 78 (253)
T ss_dssp SCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESCHHHHHHTT-CCT---TEEECCTTSHHHHHHHHTTCSEEEECCC
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcCCCchhhcC-CCe---eEEEecCCCHHHHHHHHcCCCEEEEecc
Confidence 356899998 699999999999999 899999999988766541 111 1111 2344444444455888887764
Q ss_pred C
Q psy9637 78 A 78 (490)
Q Consensus 78 ~ 78 (490)
.
T Consensus 79 ~ 79 (253)
T 1xq6_A 79 A 79 (253)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, PS aeruginosa, structurual genomics; 2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=94.87 E-value=0.011 Score=59.47 Aligned_cols=94 Identities=11% Similarity=0.151 Sum_probs=54.1
Q ss_pred CCCCCcEEEEc-ccHHHHHHHHHHHHCCCe---EEEE-eCChHHHHHHHHcccCCCCeeccC-CHHHHHhhCCCCcEEEE
Q psy9637 1 MAAKGDIGLIG-LAVMGQNLILNMNDHGFT---VVAY-NRTTAKVDSFLANEAKGTNIIGAH-SLEELVKNLKKPRRVMM 74 (490)
Q Consensus 1 M~~~~~IgiIG-lG~MG~~lA~~L~~~G~~---V~v~-dr~~~~~~~l~~~g~~~~~i~~~~-s~~e~v~~l~~~dvIil 74 (490)
|.++|||+|+| .|.+|..+.+.|.+.+|+ ++.. +++... +.+. ..+..+...+ ++++ ++.+|+||+
T Consensus 3 M~m~~kV~IiGAtG~iG~~llr~L~~~~~~~~elv~i~s~~~~g-~~~~---~~g~~i~~~~~~~~~----~~~~DvV~~ 74 (340)
T 2hjs_A 3 MSQPLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAG-QRMG---FAESSLRVGDVDSFD----FSSVGLAFF 74 (340)
T ss_dssp --CCCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTT-CEEE---ETTEEEECEEGGGCC----GGGCSEEEE
T ss_pred CCCCcEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEEecCCCCC-Cccc---cCCcceEEecCCHHH----hcCCCEEEE
Confidence 44457999999 799999999999977664 4444 432110 0000 0011111111 1222 234899999
Q ss_pred ecCCCchHHHHHHhhcccCCCCCEEEcCCCCC
Q psy9637 75 LVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 75 ~vp~~~~v~~vl~~l~~~l~~g~iiId~s~~~ 106 (490)
|+|.. ...+....+ ++.|..+||.|..+
T Consensus 75 a~g~~-~s~~~a~~~---~~aG~kvId~Sa~~ 102 (340)
T 2hjs_A 75 AAAAE-VSRAHAERA---RAAGCSVIDLSGAL 102 (340)
T ss_dssp CSCHH-HHHHHHHHH---HHTTCEEEETTCTT
T ss_pred cCCcH-HHHHHHHHH---HHCCCEEEEeCCCC
Confidence 99875 444444443 34688899998754
|
| >3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=94.86 E-value=0.032 Score=54.89 Aligned_cols=39 Identities=26% Similarity=0.467 Sum_probs=34.2
Q ss_pred CCCCCcEEEEc-ccHHHHHHHHHHHHCCCeEEEEeCChHH
Q psy9637 1 MAAKGDIGLIG-LAVMGQNLILNMNDHGFTVVAYNRTTAK 39 (490)
Q Consensus 1 M~~~~~IgiIG-lG~MG~~lA~~L~~~G~~V~v~dr~~~~ 39 (490)
|+.+|+|-|.| .|.+|..++..|+++|++|++.+|+++.
T Consensus 2 M~~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~ 41 (341)
T 3enk_A 2 MSTKGTILVTGGAGYIGSHTAVELLAHGYDVVIADNLVNS 41 (341)
T ss_dssp CCSSCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSS
T ss_pred CCCCcEEEEecCCcHHHHHHHHHHHHCCCcEEEEecCCcc
Confidence 65567899998 5999999999999999999999987654
|
| >2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A* | Back alignment and structure |
|---|
Probab=94.83 E-value=0.019 Score=58.59 Aligned_cols=81 Identities=10% Similarity=0.161 Sum_probs=58.8
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCC---eEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCc
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDHGF---TVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGS 80 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~G~---~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~ 80 (490)
.||-|||. |+.|.+-+.-+...|. .|++||+++.+ .+.. . +++ .. +|+||-++.-+.
T Consensus 215 ~kV~ViG~~G~vG~~A~~~a~~lGa~~~~V~v~D~~~~~------~g~~------~---~~i-~~---aDivIn~vlig~ 275 (394)
T 2qrj_A 215 PTVLIIGALGRCGSGAIDLLHKVGIPDANILKWDIKETS------RGGP------F---DEI-PQ---ADIFINCIYLSK 275 (394)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCCGGGEEEECHHHHT------TCSC------C---THH-HH---SSEEEECCCCCS
T ss_pred CeEEEEcCCCHHHHHHHHHHHhCCCCcCceEEeeccccc------cCCc------h---hhH-hh---CCEEEECcCcCC
Confidence 57999999 9999999999999998 89999987621 1321 1 233 34 899999998643
Q ss_pred hHHHHH-HhhcccC-CCCCEEEcCCC
Q psy9637 81 AVDDFI-DKLVPLL-EKGDIIIDGGN 104 (490)
Q Consensus 81 ~v~~vl-~~l~~~l-~~g~iiId~s~ 104 (490)
..-.++ ++.+..+ ++|.+|||.+.
T Consensus 276 ~aP~Lvt~e~v~~m~k~gsVIVDVA~ 301 (394)
T 2qrj_A 276 PIAPFTNMEKLNNPNRRLRTVVDVSA 301 (394)
T ss_dssp SCCCSCCHHHHCCTTCCCCEEEETTC
T ss_pred CCCcccCHHHHhcCcCCCeEEEEEec
Confidence 221122 4455567 89999999974
|
| >3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E | Back alignment and structure |
|---|
Probab=94.83 E-value=0.12 Score=48.81 Aligned_cols=81 Identities=10% Similarity=0.183 Sum_probs=51.3
Q ss_pred cEEEEc-ccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 6 DIGLIG-LAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 6 ~IgiIG-lG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
++-|.| .|-+|..+|+.|+++|++|++.+|++++.+.+.+... .. ...+-+=+.+...++.
T Consensus 11 ~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~---------------~~---~~~~~~Dv~d~~~v~~ 72 (248)
T 3op4_A 11 VALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISDYLG---------------DN---GKGMALNVTNPESIEA 72 (248)
T ss_dssp EEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHG---------------GG---EEEEECCTTCHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc---------------cc---ceEEEEeCCCHHHHHH
Confidence 344555 5889999999999999999999999888776553211 01 1122222334445666
Q ss_pred HHHhhcccCCCCCEEEcCCC
Q psy9637 85 FIDKLVPLLEKGDIIIDGGN 104 (490)
Q Consensus 85 vl~~l~~~l~~g~iiId~s~ 104 (490)
+++.+.....+=|++|+...
T Consensus 73 ~~~~~~~~~g~iD~lv~nAg 92 (248)
T 3op4_A 73 VLKAITDEFGGVDILVNNAG 92 (248)
T ss_dssp HHHHHHHHHCCCSEEEECCC
T ss_pred HHHHHHHHcCCCCEEEECCC
Confidence 66666554444567776543
|
| >2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D | Back alignment and structure |
|---|
Probab=94.81 E-value=0.032 Score=53.47 Aligned_cols=70 Identities=14% Similarity=0.229 Sum_probs=50.1
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHC--CCeEEEEeCChHHHHHHHHcccCCCCee--ccCCHHHHHhhCCCCcEEEEecC
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDH--GFTVVAYNRTTAKVDSFLANEAKGTNII--GAHSLEELVKNLKKPRRVMMLVK 77 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~--G~~V~v~dr~~~~~~~l~~~g~~~~~i~--~~~s~~e~v~~l~~~dvIil~vp 77 (490)
|+|.|.|. |.+|..++..|++. ||+|++.+|++++.+.+...+.. +. -..+++++.+.++.+|+||-+..
T Consensus 1 ~~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~l~~~~~~---~~~~D~~d~~~l~~~~~~~d~vi~~a~ 75 (287)
T 2jl1_A 1 FSIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKASTLADQGVE---VRHGDYNQPESLQKAFAGVSKLLFISG 75 (287)
T ss_dssp CCEEETTTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTTHHHHHTTCE---EEECCTTCHHHHHHHTTTCSEEEECCC
T ss_pred CeEEEEcCCchHHHHHHHHHHHhCCCCeEEEEEcCHHHHhHHhhcCCe---EEEeccCCHHHHHHHHhcCCEEEEcCC
Confidence 46889986 99999999999998 99999999998776655433221 11 12345555555566888887654
|
| >3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=94.72 E-value=0.012 Score=58.89 Aligned_cols=40 Identities=13% Similarity=0.322 Sum_probs=34.9
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHHC-CCeEEEEeCChHHHHHH
Q psy9637 4 KGDIGLIG-LAVMGQNLILNMNDH-GFTVVAYNRTTAKVDSF 43 (490)
Q Consensus 4 ~~~IgiIG-lG~MG~~lA~~L~~~-G~~V~v~dr~~~~~~~l 43 (490)
+|+|.|.| .|.+|..++..|++. ||+|++.+|++++.+.+
T Consensus 24 ~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~ 65 (372)
T 3slg_A 24 AKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRLGDL 65 (372)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHHSSCEEEEEESCCTTTGGG
T ss_pred CCEEEEECCCChHHHHHHHHHHhCCCCEEEEEeCChhhhhhh
Confidence 47899999 699999999999998 99999999998765544
|
| >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium} | Back alignment and structure |
|---|
Probab=94.67 E-value=0.078 Score=49.84 Aligned_cols=79 Identities=11% Similarity=0.214 Sum_probs=53.3
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChH-HHHHHHHcccCCCCeecc-CCHHHHHhhCCCCcEEEEecCCCchH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTA-KVDSFLANEAKGTNIIGA-HSLEELVKNLKKPRRVMMLVKAGSAV 82 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~-~~~~l~~~g~~~~~i~~~-~s~~e~v~~l~~~dvIil~vp~~~~v 82 (490)
++|-|||.|.+|..-+..|.+.|.+|++++++.. .++.+.+.+. +... .... .+.|+.+|+||.++.+ ..+
T Consensus 32 k~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~~~~~l~~l~~~~~----i~~i~~~~~--~~dL~~adLVIaAT~d-~~~ 104 (223)
T 3dfz_A 32 RSVLVVGGGTIATRRIKGFLQEGAAITVVAPTVSAEINEWEAKGQ----LRVKRKKVG--EEDLLNVFFIVVATND-QAV 104 (223)
T ss_dssp CCEEEECCSHHHHHHHHHHGGGCCCEEEECSSCCHHHHHHHHTTS----CEEECSCCC--GGGSSSCSEEEECCCC-THH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHcCC----cEEEECCCC--HhHhCCCCEEEECCCC-HHH
Confidence 6899999999999999999999999999987643 3555554431 1111 1111 1234458999988655 466
Q ss_pred HHHHHhhc
Q psy9637 83 DDFIDKLV 90 (490)
Q Consensus 83 ~~vl~~l~ 90 (490)
...+....
T Consensus 105 N~~I~~~a 112 (223)
T 3dfz_A 105 NKFVKQHI 112 (223)
T ss_dssp HHHHHHHS
T ss_pred HHHHHHHH
Confidence 66655554
|
| >3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG, oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A | Back alignment and structure |
|---|
Probab=94.66 E-value=0.073 Score=54.69 Aligned_cols=110 Identities=17% Similarity=0.183 Sum_probs=73.9
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEE-EEeCC----------hHHHHHHHHcccCCCCeec----cCCHHHHHhhCCCC
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVV-AYNRT----------TAKVDSFLANEAKGTNIIG----AHSLEELVKNLKKP 69 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~-v~dr~----------~~~~~~l~~~g~~~~~i~~----~~s~~e~v~~l~~~ 69 (490)
++|.|.|.|++|...|+.|.+.|.+|+ +.|.+ .+.+.++.+... .+.. .-+.+++... ++
T Consensus 222 ~~vaVqG~GnVG~~aa~~l~e~GakVVavsD~~G~iyd~~GlD~~~l~~~~~~~g---~i~~~~a~~~~~~~i~~~--~~ 296 (424)
T 3k92_A 222 ARIIIQGFGNAGSFLAKFMHDAGAKVIGISDANGGLYNPDGLDIPYLLDKRDSFG---MVTNLFTDVITNEELLEK--DC 296 (424)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCEEEEEECSSCEEECTTCCCHHHHHHHCCSSS---CCGGGCSCCBCHHHHHHS--CC
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCcEECCCCCCHHHHHHHHHHhC---CCCCCCcEEecCccceec--cc
Confidence 579999999999999999999999974 66766 666666554321 1111 1245665543 48
Q ss_pred cEEEEecCCCchHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccc
Q psy9637 70 RRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVG 126 (490)
Q Consensus 70 dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld 126 (490)
|+.+-|-.......+.+. .+ +-++|+...|.. .+.+..+.+.++|+.|+.
T Consensus 297 DIliPcA~~n~I~~~~a~----~l-~ak~V~EgAN~p--~t~eA~~iL~~rGI~~~P 346 (424)
T 3k92_A 297 DILVPAAISNQITAKNAH----NI-QASIVVERANGP--TTIDATKILNERGVLLVP 346 (424)
T ss_dssp SEEEECSCSSCBCTTTGG----GC-CCSEEECCSSSC--BCHHHHHHHHHTTCEEEC
T ss_pred cEEeecCcccccChhhHh----hc-CceEEEcCCCCC--CCHHHHHHHHHCCCEEEC
Confidence 999877665433333323 33 568999999865 345566888999987753
|
| >4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=94.60 E-value=0.1 Score=54.26 Aligned_cols=108 Identities=20% Similarity=0.297 Sum_probs=75.2
Q ss_pred CcEEEEccc----------HHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEE
Q psy9637 5 GDIGLIGLA----------VMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMM 74 (490)
Q Consensus 5 ~~IgiIGlG----------~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil 74 (490)
.+|+|+|+- .-...++..|.+.|.+|.+||+.-. +...... ..+..++++.++++. +|.|++
T Consensus 323 ~~v~vlGlafK~~~dD~ReSp~~~i~~~L~~~g~~v~~~DP~~~--~~~~~~~---~~~~~~~~~~~~~~~---ad~vvi 394 (446)
T 4a7p_A 323 KTVGILGLTFKPNTDDMRDAPSLSIIAALQDAGATVKAYDPEGV--EQASKML---TDVEFVENPYAAADG---ADALVI 394 (446)
T ss_dssp CEEEEECCSSSTTSCCCTTCSHHHHHHHHHHTSCEEEEECSSCH--HHHGGGC---SSCCBCSCHHHHHTT---BSEEEE
T ss_pred CEEEEEEEEeCCCCcccccChHHHHHHHHHHCCCEEEEECCCCC--HhHHHhc---CCceEecChhHHhcC---CCEEEE
Confidence 589999987 5678899999999999999998753 2222211 124467788888877 899999
Q ss_pred ecCCCchHHH-HHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccC
Q psy9637 75 LVKAGSAVDD-FIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCG 128 (490)
Q Consensus 75 ~vp~~~~v~~-vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~ 128 (490)
++...+ .++ -.+.+...+ +..+|+|+-|..... .+++.|+.|...+
T Consensus 395 ~t~~~~-f~~~d~~~~~~~~-~~~~i~D~r~~~~~~------~~~~~g~~y~~iG 441 (446)
T 4a7p_A 395 VTEWDA-FRALDLTRIKNSL-KSPVLVDLRNIYPPA------ELERAGLQYTGVG 441 (446)
T ss_dssp CSCCTT-TTSCCHHHHHTTB-SSCBEECSSCCSCHH------HHHHTTCBCCCSS
T ss_pred eeCCHH-hhcCCHHHHHHhc-CCCEEEECCCCCCHH------HHHhcCCEEEEec
Confidence 998753 221 123344434 357899999987532 3456788887665
|
| >1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A* | Back alignment and structure |
|---|
Probab=94.59 E-value=0.034 Score=55.49 Aligned_cols=37 Identities=22% Similarity=0.397 Sum_probs=33.1
Q ss_pred CCCCCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCCh
Q psy9637 1 MAAKGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTT 37 (490)
Q Consensus 1 M~~~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~ 37 (490)
|+.+.+|.|||.|.+|...|..|++.|++|+++|+..
T Consensus 3 m~~~~dVvVIG~Gi~Gls~A~~La~~G~~V~vle~~~ 39 (363)
T 1c0p_A 3 MHSQKRVVVLGSGVIGLSSALILARKGYSVHILARDL 39 (363)
T ss_dssp CCCSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHhCCCEEEEEeccC
Confidence 4455689999999999999999999999999999863
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.57 E-value=0.23 Score=46.50 Aligned_cols=83 Identities=13% Similarity=0.173 Sum_probs=53.5
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEe--cCCCch
Q psy9637 5 GDIGLIG-LAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMML--VKAGSA 81 (490)
Q Consensus 5 ~~IgiIG-lG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~--vp~~~~ 81 (490)
+++-|.| .|-+|..+|+.|++.|++|++.+|++++.+.+.+.-. +. ..++.++. +.+...
T Consensus 6 k~vlITGas~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~---------------~~--~~~~~~~~~D~~~~~~ 68 (247)
T 3lyl_A 6 KVALVTGASRGIGFEVAHALASKGATVVGTATSQASAEKFENSMK---------------EK--GFKARGLVLNISDIES 68 (247)
T ss_dssp CEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH---------------HT--TCCEEEEECCTTCHHH
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH---------------hc--CCceEEEEecCCCHHH
Confidence 3455666 5899999999999999999999999988776553211 00 02333322 334345
Q ss_pred HHHHHHhhcccCCCCCEEEcCCC
Q psy9637 82 VDDFIDKLVPLLEKGDIIIDGGN 104 (490)
Q Consensus 82 v~~vl~~l~~~l~~g~iiId~s~ 104 (490)
++.+++++.....+=+++|++..
T Consensus 69 ~~~~~~~~~~~~~~id~li~~Ag 91 (247)
T 3lyl_A 69 IQNFFAEIKAENLAIDILVNNAG 91 (247)
T ss_dssp HHHHHHHHHHTTCCCSEEEECCC
T ss_pred HHHHHHHHHHHcCCCCEEEECCC
Confidence 66666666555445567776654
|
| >3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis} | Back alignment and structure |
|---|
Probab=94.51 E-value=0.079 Score=50.86 Aligned_cols=45 Identities=22% Similarity=0.278 Sum_probs=33.9
Q ss_pred CCCCCc-EEEEc-ccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q psy9637 1 MAAKGD-IGLIG-LAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLA 45 (490)
Q Consensus 1 M~~~~~-IgiIG-lG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~ 45 (490)
|+.++| |-|.| .|.+|..+++.|+++|++|++.+|++++.+.+.+
T Consensus 1 M~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~ 47 (281)
T 3m1a_A 1 MSESAKVWLVTGASSGFGRAIAEAAVAAGDTVIGTARRTEALDDLVA 47 (281)
T ss_dssp ---CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHH
T ss_pred CCCCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 553334 55555 5899999999999999999999999887666543
|
| >4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* | Back alignment and structure |
|---|
Probab=94.49 E-value=0.14 Score=54.67 Aligned_cols=96 Identities=15% Similarity=0.140 Sum_probs=63.2
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHc-ccCCCCeec-cCCHHHHHh-hCCCCcEEEEecCCCch
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLAN-EAKGTNIIG-AHSLEELVK-NLKKPRRVMMLVKAGSA 81 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~-g~~~~~i~~-~~s~~e~v~-~l~~~dvIil~vp~~~~ 81 (490)
++|-|+|.|.+|..++..|.+.|++|++.|.++++++.+.+. +.. -+.. ..+.+.+.+ .++++|.+++ .+++ .
T Consensus 128 ~hviI~G~g~~g~~la~~L~~~~~~vvvid~~~~~~~~~~~~~~~~--~i~Gd~~~~~~L~~a~i~~a~~vi~-t~~D-~ 203 (565)
T 4gx0_A 128 GHILIFGIDPITRTLIRKLESRNHLFVVVTDNYDQALHLEEQEGFK--VVYGSPTDAHVLAGLRVAAARSIIA-NLSD-P 203 (565)
T ss_dssp SCEEEESCCHHHHHHHHHTTTTTCCEEEEESCHHHHHHHHHSCSSE--EEESCTTCHHHHHHTTGGGCSEEEE-CSCH-H
T ss_pred CeEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhcCCe--EEEeCCCCHHHHHhcCcccCCEEEE-eCCc-H
Confidence 579999999999999999999999999999999999988876 432 1111 233333322 3456899987 4543 3
Q ss_pred HHHHHHhhcccCCCCCEEEcCCC
Q psy9637 82 VDDFIDKLVPLLEKGDIIIDGGN 104 (490)
Q Consensus 82 v~~vl~~l~~~l~~g~iiId~s~ 104 (490)
....+-..+..+..-.+|.-..+
T Consensus 204 ~n~~~~~~ar~~~~~~iiar~~~ 226 (565)
T 4gx0_A 204 DNANLCLTVRSLCQTPIIAVVKE 226 (565)
T ss_dssp HHHHHHHHHHTTCCCCEEEECSS
T ss_pred HHHHHHHHHHHhcCceEEEEECC
Confidence 33222223334444456655543
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=94.38 E-value=0.27 Score=48.99 Aligned_cols=94 Identities=15% Similarity=0.180 Sum_probs=59.1
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHcccCCCCeeccC--CHHHHHhhC-----CCCcEEEEec
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGF-TVVAYNRTTAKVDSFLANEAKGTNIIGAH--SLEELVKNL-----KKPRRVMMLV 76 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~g~~~~~i~~~~--s~~e~v~~l-----~~~dvIil~v 76 (490)
.+|.|+|.|.+|...+..+...|. +|++.++++++.+.+.+.|+. .+.-.. +..++.+.+ ...|+||-++
T Consensus 173 ~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~--~vi~~~~~~~~~~~~~i~~~~~~g~D~vid~~ 250 (356)
T 1pl8_A 173 HKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGAD--LVLQISKESPQEIARKVEGQLGCKPEVTIECT 250 (356)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCS--EEEECSSCCHHHHHHHHHHHHTSCCSEEEECS
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCC--EEEcCcccccchHHHHHHHHhCCCCCEEEECC
Confidence 479999999999998888888898 899999999988877766542 111111 122222211 2468888777
Q ss_pred CCCchHHHHHHhhcccCCCCCEEEcCCC
Q psy9637 77 KAGSAVDDFIDKLVPLLEKGDIIIDGGN 104 (490)
Q Consensus 77 p~~~~v~~vl~~l~~~l~~g~iiId~s~ 104 (490)
.....+ ......+.++-.++..+.
T Consensus 251 g~~~~~----~~~~~~l~~~G~iv~~G~ 274 (356)
T 1pl8_A 251 GAEASI----QAGIYATRSGGTLVLVGL 274 (356)
T ss_dssp CCHHHH----HHHHHHSCTTCEEEECSC
T ss_pred CChHHH----HHHHHHhcCCCEEEEEec
Confidence 653222 333334555555555543
|
| >3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A | Back alignment and structure |
|---|
Probab=94.38 E-value=0.045 Score=55.13 Aligned_cols=122 Identities=7% Similarity=0.122 Sum_probs=69.1
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHcccC-CCCe--eccCCHHHHHhhCCCCcEEEEecCCCc
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGF-TVVAYNRTTAKVDSFLANEAK-GTNI--IGAHSLEELVKNLKKPRRVMMLVKAGS 80 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~g~~-~~~i--~~~~s~~e~v~~l~~~dvIil~vp~~~ 80 (490)
.+|.|||+|..|..++.+|+..|. +++++|.+.-....+...... ...+ .-+....+.+..+ .|++-+...+..-
T Consensus 119 ~~VlvvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~-np~v~v~~~~~~i 197 (353)
T 3h5n_A 119 AKVVILGCGGIGNHVSVILATSGIGEIILIDNDQIENTNLTRQVLFSEDDVGKNKTEVIKRELLKR-NSEISVSEIALNI 197 (353)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHH-CTTSEEEEEECCC
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCeEEEECCCcCcccccccccCCChHHCCChHHHHHHHHHHHH-CCCCeEEEeeccc
Confidence 589999999999999999999997 788999874322222111000 0000 0011222222222 2555555554321
Q ss_pred hHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCC
Q psy9637 81 AVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSG 131 (490)
Q Consensus 81 ~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsG 131 (490)
..+. .+.. +..-|+|||++-........+.+.+.+.++.++.+++.|
T Consensus 198 ~~~~---~~~~-~~~~DlVvd~~Dn~~~~r~~ln~~c~~~~~p~i~~~~~g 244 (353)
T 3h5n_A 198 NDYT---DLHK-VPEADIWVVSADHPFNLINWVNKYCVRANQPYINAGYVN 244 (353)
T ss_dssp CSGG---GGGG-SCCCSEEEECCCCSTTHHHHHHHHHHHTTCCEEEEEEET
T ss_pred Cchh---hhhH-hccCCEEEEecCChHHHHHHHHHHHHHhCCCEEEEEEeC
Confidence 1111 1223 567789999875432233344477788899998886654
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=94.37 E-value=0.065 Score=53.44 Aligned_cols=94 Identities=12% Similarity=0.075 Sum_probs=59.1
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHcccCCCCeecc--CCHHHHHhhC---CCCcEEEEecCC
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGF-TVVAYNRTTAKVDSFLANEAKGTNIIGA--HSLEELVKNL---KKPRRVMMLVKA 78 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~g~~~~~i~~~--~s~~e~v~~l---~~~dvIil~vp~ 78 (490)
.+|.|+|.|.+|...+..+...|. +|++.++++++.+.+.+.|.. .+.-. .++.+.+.++ ...|+||-++..
T Consensus 169 ~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~Ga~--~~~~~~~~~~~~~v~~~~~g~g~D~vid~~g~ 246 (348)
T 2d8a_A 169 KSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGAD--YVINPFEEDVVKEVMDITDGNGVDVFLEFSGA 246 (348)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHTCS--EEECTTTSCHHHHHHHHTTTSCEEEEEECSCC
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCC--EEECCCCcCHHHHHHHHcCCCCCCEEEECCCC
Confidence 479999999999999999888999 999999999988877765542 11111 2333333221 136777777765
Q ss_pred CchHHHHHHhhcccCCCCCEEEcCCC
Q psy9637 79 GSAVDDFIDKLVPLLEKGDIIIDGGN 104 (490)
Q Consensus 79 ~~~v~~vl~~l~~~l~~g~iiId~s~ 104 (490)
...+...++ .+.++-.++..+.
T Consensus 247 ~~~~~~~~~----~l~~~G~iv~~g~ 268 (348)
T 2d8a_A 247 PKALEQGLQ----AVTPAGRVSLLGL 268 (348)
T ss_dssp HHHHHHHHH----HEEEEEEEEECCC
T ss_pred HHHHHHHHH----HHhcCCEEEEEcc
Confidence 333333333 3334445555543
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=94.34 E-value=0.16 Score=47.86 Aligned_cols=83 Identities=11% Similarity=0.109 Sum_probs=53.1
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEec--CCCch
Q psy9637 5 GDIGLIG-LAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLV--KAGSA 81 (490)
Q Consensus 5 ~~IgiIG-lG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~v--p~~~~ 81 (490)
+++-|.| .|-+|..+|+.|++.|++|++.+|++++.+.+.+... +. ..++.++.+ .+...
T Consensus 10 k~vlITGas~giG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~---------------~~--~~~~~~~~~D~~~~~~ 72 (253)
T 3qiv_A 10 KVGIVTGSGGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQIV---------------AD--GGTAISVAVDVSDPES 72 (253)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH---------------HT--TCEEEEEECCTTSHHH
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHH---------------hc--CCcEEEEEccCCCHHH
Confidence 3456666 5899999999999999999999999988776654211 10 123333322 33334
Q ss_pred HHHHHHhhcccCCCCCEEEcCCC
Q psy9637 82 VDDFIDKLVPLLEKGDIIIDGGN 104 (490)
Q Consensus 82 v~~vl~~l~~~l~~g~iiId~s~ 104 (490)
++.+++.+.....+=+++|++..
T Consensus 73 ~~~~~~~~~~~~g~id~li~~Ag 95 (253)
T 3qiv_A 73 AKAMADRTLAEFGGIDYLVNNAA 95 (253)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHHHcCCCCEEEECCC
Confidence 55566655554445567776654
|
| >2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A* | Back alignment and structure |
|---|
Probab=94.30 E-value=0.15 Score=50.62 Aligned_cols=73 Identities=15% Similarity=0.174 Sum_probs=51.6
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHC-CC-eEEEEeCChHHHHHHHHcccCCCCeec----cCCHHHHHhhCCCCcEEEEecC
Q psy9637 5 GDIGLIG-LAVMGQNLILNMNDH-GF-TVVAYNRTTAKVDSFLANEAKGTNIIG----AHSLEELVKNLKKPRRVMMLVK 77 (490)
Q Consensus 5 ~~IgiIG-lG~MG~~lA~~L~~~-G~-~V~v~dr~~~~~~~l~~~g~~~~~i~~----~~s~~e~v~~l~~~dvIil~vp 77 (490)
++|-|.| .|.+|..+++.|++. |+ +|++++|++.+.+.+.+... ..++.. ..+.+.+.+.++.+|+||-+..
T Consensus 22 k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~v~~~~~Dl~d~~~l~~~~~~~D~Vih~Aa 100 (344)
T 2gn4_A 22 QTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAMEFN-DPRMRFFIGDVRDLERLNYALEGVDICIHAAA 100 (344)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCHHHHHHHHHHHC-CTTEEEEECCTTCHHHHHHHTTTCSEEEECCC
T ss_pred CEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECChhhHHHHHHHhc-CCCEEEEECCCCCHHHHHHHHhcCCEEEECCC
Confidence 6799998 599999999999999 97 99999999888766554211 011111 2345555555556888887764
Q ss_pred C
Q psy9637 78 A 78 (490)
Q Consensus 78 ~ 78 (490)
.
T Consensus 101 ~ 101 (344)
T 2gn4_A 101 L 101 (344)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A* | Back alignment and structure |
|---|
Probab=94.26 E-value=0.09 Score=54.40 Aligned_cols=113 Identities=13% Similarity=0.110 Sum_probs=63.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHH--HHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEec--CCC
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKV--DSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLV--KAG 79 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~--~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~v--p~~ 79 (490)
.++|.|||+|..|.+.|+.|++.||+|+++|...... ..+. .|. ++..-....+.++. +|.|+++- |..
T Consensus 5 ~~~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~~~l~-~G~---~~~~g~~~~~~~~~---~d~vV~s~gi~~~ 77 (439)
T 2x5o_A 5 GKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKLP-EAV---ERHTGSLNDEWLMA---ADLIVASPGIALA 77 (439)
T ss_dssp TCCEEEECCHHHHHHHHHHHHTTTCCCEEEESSSSCTTGGGSC-TTS---CEEESSCCHHHHHT---CSEEEECTTSCTT
T ss_pred CCEEEEEeecHHHHHHHHHHHhCCCEEEEEECCCCcchhHHhh-CCC---EEEECCCcHHHhcc---CCEEEeCCCCCCC
Confidence 3689999999999999999999999999999754321 1222 222 23211212444444 78888763 322
Q ss_pred ch-HHHHHH----------hhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccc
Q psy9637 80 SA-VDDFID----------KLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLL 123 (490)
Q Consensus 80 ~~-v~~vl~----------~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~ 123 (490)
.+ +....+ -+...++..-|-|-+||+.-.++.-+...+...|..
T Consensus 78 ~p~~~~a~~~~~~v~~~~~~~~~~~~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~ 132 (439)
T 2x5o_A 78 HPSLSAAADAGIEIVGDIELFCREAQAPIVAITGSNGKSTVTTLVGEMAKAAGVN 132 (439)
T ss_dssp CHHHHHHHHTTCEEECHHHHHHHHCCSCEEEEECSSSHHHHHHHHHHHHHHTTCC
T ss_pred CHHHHHHHHCCCcEEEHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHhcCCC
Confidence 22 222111 111123333455556666544444444667776654
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=94.23 E-value=0.077 Score=48.10 Aligned_cols=42 Identities=10% Similarity=-0.001 Sum_probs=36.3
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHc
Q psy9637 5 GDIGLIG-LAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLAN 46 (490)
Q Consensus 5 ~~IgiIG-lG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~ 46 (490)
++|.|+| .|.+|..++..+...|++|++.++++++.+.+.+.
T Consensus 40 ~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~~ 82 (198)
T 1pqw_A 40 ERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRL 82 (198)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTT
T ss_pred CEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHc
Confidence 5788999 69999999999999999999999998887766543
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=94.23 E-value=0.11 Score=54.36 Aligned_cols=98 Identities=12% Similarity=0.190 Sum_probs=66.0
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHh--hCCCCcEEEEecCCCchH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVK--NLKKPRRVMMLVKAGSAV 82 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~--~l~~~dvIil~vp~~~~v 82 (490)
.+|-|+|.|++|..+|+.|. .+++|.+.++++++++.+.+.-....-+..-.+-.+++. .++.+|+++.++.++ .+
T Consensus 236 ~~v~I~GgG~ig~~lA~~L~-~~~~v~iIE~d~~r~~~la~~l~~~~Vi~GD~td~~~L~ee~i~~~D~~ia~T~~D-e~ 313 (461)
T 4g65_A 236 RRIMIVGGGNIGASLAKRLE-QTYSVKLIERNLQRAEKLSEELENTIVFCGDAADQELLTEENIDQVDVFIALTNED-ET 313 (461)
T ss_dssp CEEEEECCSHHHHHHHHHHT-TTSEEEEEESCHHHHHHHHHHCTTSEEEESCTTCHHHHHHTTGGGCSEEEECCSCH-HH
T ss_pred cEEEEEcchHHHHHHHHHhh-hcCceEEEecCHHHHHHHHHHCCCceEEeccccchhhHhhcCchhhcEEEEcccCc-HH
Confidence 57999999999999999985 569999999999999998875422101122223333433 356689999887774 44
Q ss_pred HHHHHhhcccCCCCCEEEcCCC
Q psy9637 83 DDFIDKLVPLLEKGDIIIDGGN 104 (490)
Q Consensus 83 ~~vl~~l~~~l~~g~iiId~s~ 104 (490)
.-+...++..+....+|.-..+
T Consensus 314 Ni~~~llAk~~gv~kvIa~vn~ 335 (461)
T 4g65_A 314 NIMSAMLAKRMGAKKVMVLIQR 335 (461)
T ss_dssp HHHHHHHHHHTTCSEEEEECSC
T ss_pred HHHHHHHHHHcCCccccccccc
Confidence 4344445555656666665554
|
| >2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A | Back alignment and structure |
|---|
Probab=94.22 E-value=0.12 Score=53.99 Aligned_cols=116 Identities=14% Similarity=0.188 Sum_probs=74.8
Q ss_pred CcEEEEcccH----------HHHHHHHHHHHCCCeEEEEeCChH--HHHHHHHccc-----C-CCCeeccCCHHHHHhhC
Q psy9637 5 GDIGLIGLAV----------MGQNLILNMNDHGFTVVAYNRTTA--KVDSFLANEA-----K-GTNIIGAHSLEELVKNL 66 (490)
Q Consensus 5 ~~IgiIGlG~----------MG~~lA~~L~~~G~~V~v~dr~~~--~~~~l~~~g~-----~-~~~i~~~~s~~e~v~~l 66 (490)
.+|+|+|+-. -...++..|.+.|.+|.+||+.-. .......... . ...+..+.++.++++.
T Consensus 330 ~~v~vlGlafK~~~dD~R~sp~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 408 (467)
T 2q3e_A 330 KKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAHLHIYDPKVPREQIVVDLSHPGVSEDDQVSRLVTISKDPYEACDG- 408 (467)
T ss_dssp CEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECSSSCHHHHHHHHCC------CHHHHHEEECSSHHHHHTT-
T ss_pred CEEEEEeeccCCCCcchhhChHHHHHHHHHHCCCEEEEEcCccCHHHHhhhhccccccccccccCceeecCCHHHHHhC-
Confidence 5799999975 788899999999999999998632 2211110000 0 0013446678887776
Q ss_pred CCCcEEEEecCCCchHHHH-HHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccC
Q psy9637 67 KKPRRVMMLVKAGSAVDDF-IDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCG 128 (490)
Q Consensus 67 ~~~dvIil~vp~~~~v~~v-l~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~ 128 (490)
+|.|++++... ..+.. .+.+...+....+|+|+-|.... ..+.+...|+.|...+
T Consensus 409 --ad~~vi~t~~~-~f~~~~~~~~~~~~~~~~~i~D~r~~~~~----~~~~~~~~g~~~~~ig 464 (467)
T 2q3e_A 409 --AHAVVICTEWD-MFKELDYERIHKKMLKPAFIFDGRRVLDG----LHNELQTIGFQIETIG 464 (467)
T ss_dssp --CSEEEECSCCG-GGGGSCHHHHHHHSCSSCEEEESSCTTTT----CHHHHHHHTCEEEETT
T ss_pred --CcEEEEecCCh-hhhcCCHHHHHHhcCCCCEEEeCCCcCCc----hHHHHHhcCcEEEEeC
Confidence 99999999885 44321 23444455555669999997643 1134456688887654
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=94.19 E-value=0.16 Score=48.65 Aligned_cols=82 Identities=15% Similarity=0.125 Sum_probs=55.8
Q ss_pred CcEEEE--cccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEe--cCCCc
Q psy9637 5 GDIGLI--GLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMML--VKAGS 80 (490)
Q Consensus 5 ~~IgiI--GlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~--vp~~~ 80 (490)
-|+.+| |.+-+|..+|+.|++.|.+|++.||++++.++..++- .+. ..+++.+. |.+..
T Consensus 9 gKvalVTGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l---------------~~~--g~~~~~~~~Dv~~~~ 71 (255)
T 4g81_D 9 GKTALVTGSARGLGFAYAEGLAAAGARVILNDIRATLLAESVDTL---------------TRK--GYDAHGVAFDVTDEL 71 (255)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHH---------------HHT--TCCEEECCCCTTCHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH---------------Hhc--CCcEEEEEeeCCCHH
Confidence 367777 6688999999999999999999999998877654321 110 02233222 23445
Q ss_pred hHHHHHHhhcccCCCCCEEEcCC
Q psy9637 81 AVDDFIDKLVPLLEKGDIIIDGG 103 (490)
Q Consensus 81 ~v~~vl~~l~~~l~~g~iiId~s 103 (490)
.++.+++.+.....+=|++|+..
T Consensus 72 ~v~~~~~~~~~~~G~iDiLVNNA 94 (255)
T 4g81_D 72 AIEAAFSKLDAEGIHVDILINNA 94 (255)
T ss_dssp HHHHHHHHHHHTTCCCCEEEECC
T ss_pred HHHHHHHHHHHHCCCCcEEEECC
Confidence 67777777776665667887754
|
| >3b1j_A Glyceraldehyde 3-phosphate dehydrogenase (NADP+); alpha/beta fold, oxidoreductase-protein binding complex; HET: NAD; 2.20A {Synechococcus elongatus} PDB: 3b1k_A* 3b20_A* | Back alignment and structure |
|---|
Probab=94.16 E-value=0.13 Score=51.38 Aligned_cols=40 Identities=20% Similarity=0.299 Sum_probs=30.2
Q ss_pred CcEEEEcccHHHHHHHHHHHHCC---CeEEE-EeC-ChHHHHHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHG---FTVVA-YNR-TTAKVDSFL 44 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G---~~V~v-~dr-~~~~~~~l~ 44 (490)
+||||+|.|++|+.+.+.|.+++ ++|+. .|+ +++....+.
T Consensus 3 ikVgI~G~G~IGr~v~r~l~~~~~~~~evvaInd~~~~~~~~~l~ 47 (339)
T 3b1j_A 3 IRVAINGFGRIGRNFLRCWFGRQNTDLEVVAINNTSDARTAAHLL 47 (339)
T ss_dssp EEEEEECCSHHHHHHHHHHHHCSCCSEEEEEEECSSCHHHHHHHH
T ss_pred eEEEEECCCHHHHHHHHHHHhcCCCCeEEEEEecCCCHHHHHHHh
Confidence 58999999999999999998873 66654 455 555555444
|
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* | Back alignment and structure |
|---|
Probab=94.12 E-value=0.19 Score=49.53 Aligned_cols=34 Identities=15% Similarity=0.229 Sum_probs=31.0
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHHCCCeEEEEeCCh
Q psy9637 4 KGDIGLIG-LAVMGQNLILNMNDHGFTVVAYNRTT 37 (490)
Q Consensus 4 ~~~IgiIG-lG~MG~~lA~~L~~~G~~V~v~dr~~ 37 (490)
+|+|.|.| .|.+|..++..|+++|++|++.+|++
T Consensus 25 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~ 59 (351)
T 3ruf_A 25 PKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFS 59 (351)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred CCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 47899999 59999999999999999999999954
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=94.09 E-value=0.15 Score=44.72 Aligned_cols=120 Identities=10% Similarity=0.092 Sum_probs=72.5
Q ss_pred CcEEEEcccHHHHHHHHHHHHC--CCeEEEEeCChHHHHHHHHcccC---CCCeeccCCHHHHHhhC-CCCcEEEEecCC
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDH--GFTVVAYNRTTAKVDSFLANEAK---GTNIIGAHSLEELVKNL-KKPRRVMMLVKA 78 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~--G~~V~v~dr~~~~~~~l~~~g~~---~~~i~~~~s~~e~v~~l-~~~dvIil~vp~ 78 (490)
.+|--||+|. | .++..+++. +.+|++.|.+++.++...+.... ..++....+..+..... +..|+|++.-+.
T Consensus 27 ~~vldiG~G~-G-~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~~ 104 (178)
T 3hm2_A 27 ETLWDIGGGS-G-SIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRIAVQQGAPRAFDDVPDNPDVIFIGGGL 104 (178)
T ss_dssp EEEEEESTTT-T-HHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSEEEECCTTGGGGGCCSCCSEEEECC-T
T ss_pred CeEEEeCCCC-C-HHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCEEEecchHhhhhccCCCCCEEEECCcc
Confidence 4788999996 4 455566665 78999999999888766543111 11232233333333332 458999977655
Q ss_pred CchHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCC
Q psy9637 79 GSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGV 129 (490)
Q Consensus 79 ~~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~v 129 (490)
.. ..+++.+...|++|-.++-... .+.......+.+...+..+....+
T Consensus 105 ~~--~~~l~~~~~~L~~gG~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 152 (178)
T 3hm2_A 105 TA--PGVFAAAWKRLPVGGRLVANAV-TVESEQMLWALRKQFGGTISSFAI 152 (178)
T ss_dssp TC--TTHHHHHHHTCCTTCEEEEEEC-SHHHHHHHHHHHHHHCCEEEEEEE
T ss_pred cH--HHHHHHHHHhcCCCCEEEEEee-ccccHHHHHHHHHHcCCeeEEEEe
Confidence 43 5677778888888776653322 334444555666667765554433
|
| >2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase, bacterial cell WALL; 2.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.03 E-value=0.2 Score=52.63 Aligned_cols=113 Identities=18% Similarity=0.237 Sum_probs=64.3
Q ss_pred CCCcEEEEcccHHHHH-HHHHHHHCCCeEEEEeCChH-HHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEec--CC
Q psy9637 3 AKGDIGLIGLAVMGQN-LILNMNDHGFTVVAYNRTTA-KVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLV--KA 78 (490)
Q Consensus 3 ~~~~IgiIGlG~MG~~-lA~~L~~~G~~V~v~dr~~~-~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~v--p~ 78 (490)
..++|-|||+|..|.+ +|+.|.+.|++|+++|.... ..+.+.+.|.. +..-.+... + +.+|+|++.- |.
T Consensus 18 ~~~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~~~~~~~~~l~~~gi~---~~~g~~~~~-~---~~a~~vv~s~~i~~ 90 (491)
T 2f00_A 18 RVRHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAPNPVTQQLMNLGAT---IYFNHRPEN-V---RDASVVVVSSAISA 90 (491)
T ss_dssp TCCEEEEETTTSTTHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTTCE---EESSCCGGG-G---TTCSEEEECTTCCT
T ss_pred cCCEEEEEEcCHHHHHHHHHHHHhCCCeEEEECCCCCHHHHHHHHCCCE---EECCCCHHH-c---CCCCEEEECCCCCC
Confidence 3467999999999997 99999999999999997643 33455554432 211122322 2 3488888752 22
Q ss_pred Cch-HHHH----------HHhhcccCCC-CCEEEcCCCCChHHHHHHHHHHHHccc
Q psy9637 79 GSA-VDDF----------IDKLVPLLEK-GDIIIDGGNSEYQDTDRRSKALEAKGL 122 (490)
Q Consensus 79 ~~~-v~~v----------l~~l~~~l~~-g~iiId~s~~~~~~~~~~~~~l~~~gi 122 (490)
+.+ +... .+.+...+.. .-|-|-+||+.-.++.-+...+...|.
T Consensus 91 ~~p~~~~a~~~~ipvl~~~~~l~~~~~~~~vI~VTGTnGKTTTt~ml~~iL~~~G~ 146 (491)
T 2f00_A 91 DNPEIVAAHEARIPVIRRAEMLAELMRFRHGIAIAGTHGKTTTTAMVSSIYAEAGL 146 (491)
T ss_dssp TCHHHHHHHHTTCCEEEHHHHHHHHHTTSEEEEEESSSCHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHcCCcEEEHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHHhCCC
Confidence 111 2111 1112222222 234455666654444444477777775
|
| >3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=94.03 E-value=0.18 Score=46.73 Aligned_cols=41 Identities=17% Similarity=0.203 Sum_probs=34.8
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q psy9637 5 GDIGLIG-LAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLA 45 (490)
Q Consensus 5 ~~IgiIG-lG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~ 45 (490)
++|-|.| .|-+|..+|+.|+++|++|++.+|++++.+.+.+
T Consensus 2 k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~ 43 (230)
T 3guy_A 2 SLIVITGASSGLGAELAKLYDAEGKATYLTGRSESKLSTVTN 43 (230)
T ss_dssp -CEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH
T ss_pred CEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 3576776 5789999999999999999999999988877664
|
| >2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A* | Back alignment and structure |
|---|
Probab=94.02 E-value=0.064 Score=51.22 Aligned_cols=69 Identities=17% Similarity=0.266 Sum_probs=49.2
Q ss_pred cEEEEcc-cHHHHHHHHHHHHC--CCeEEEEeCChHHHHHHHHcccCCCCee--ccCCHHHHHhhCCCCcEEEEecC
Q psy9637 6 DIGLIGL-AVMGQNLILNMNDH--GFTVVAYNRTTAKVDSFLANEAKGTNII--GAHSLEELVKNLKKPRRVMMLVK 77 (490)
Q Consensus 6 ~IgiIGl-G~MG~~lA~~L~~~--G~~V~v~dr~~~~~~~l~~~g~~~~~i~--~~~s~~e~v~~l~~~dvIil~vp 77 (490)
+|.|.|. |.+|..++..|++. |++|++.+|++++.+.+...+.. +. -..+++++.+.++.+|+||.+..
T Consensus 1 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~---~~~~D~~d~~~~~~~~~~~d~vi~~a~ 74 (286)
T 2zcu_A 1 MIAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKAQALAAQGIT---VRQADYGDEAALTSALQGVEKLLLISS 74 (286)
T ss_dssp CEEEESTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTCHHHHHTTCE---EEECCTTCHHHHHHHTTTCSEEEECC-
T ss_pred CEEEEcCCchHHHHHHHHHHhhCCCceEEEEEcChHhhhhhhcCCCe---EEEcCCCCHHHHHHHHhCCCEEEEeCC
Confidence 4788886 99999999999998 99999999998776655433221 11 12355555555666888887754
|
| >3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=94.00 E-value=0.21 Score=47.28 Aligned_cols=40 Identities=15% Similarity=0.190 Sum_probs=33.8
Q ss_pred cEEEEc-ccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q psy9637 6 DIGLIG-LAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLA 45 (490)
Q Consensus 6 ~IgiIG-lG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~ 45 (490)
++-|.| .|.+|..+++.|++.|++|++.+|++++.+.+.+
T Consensus 14 ~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~ 54 (263)
T 3ak4_A 14 KAIVTGGSKGIGAAIARALDKAGATVAIADLDVMAAQAVVA 54 (263)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 566666 5899999999999999999999999887766543
|
| >3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=94.00 E-value=0.13 Score=49.37 Aligned_cols=87 Identities=14% Similarity=0.227 Sum_probs=54.4
Q ss_pred CCCCCcEEEEc-ccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEe--cC
Q psy9637 1 MAAKGDIGLIG-LAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMML--VK 77 (490)
Q Consensus 1 M~~~~~IgiIG-lG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~--vp 77 (490)
|-..+++-|.| .|-+|..+|+.|++.|++|++.+|++++.+.+.+.-. .. ..++.++. +.
T Consensus 1 Ml~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~---------------~~--~~~~~~~~~Dv~ 63 (264)
T 3tfo_A 1 MVMDKVILITGASGGIGEGIARELGVAGAKILLGARRQARIEAIATEIR---------------DA--GGTALAQVLDVT 63 (264)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH---------------HT--TCEEEEEECCTT
T ss_pred CCCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH---------------hc--CCcEEEEEcCCC
Confidence 43334565666 4789999999999999999999999988776553210 00 02333322 33
Q ss_pred CCchHHHHHHhhcccCCCCCEEEcCCC
Q psy9637 78 AGSAVDDFIDKLVPLLEKGDIIIDGGN 104 (490)
Q Consensus 78 ~~~~v~~vl~~l~~~l~~g~iiId~s~ 104 (490)
+...++.+++.+.....+=|++|++..
T Consensus 64 d~~~v~~~~~~~~~~~g~iD~lVnnAG 90 (264)
T 3tfo_A 64 DRHSVAAFAQAAVDTWGRIDVLVNNAG 90 (264)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 334556666665554445567776543
|
| >3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A* | Back alignment and structure |
|---|
Probab=93.97 E-value=0.18 Score=48.58 Aligned_cols=79 Identities=13% Similarity=0.170 Sum_probs=52.1
Q ss_pred cEEEEc-ccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEE--ecCCCchH
Q psy9637 6 DIGLIG-LAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMM--LVKAGSAV 82 (490)
Q Consensus 6 ~IgiIG-lG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil--~vp~~~~v 82 (490)
++-|.| .|-+|..+|+.|++.|++|++.+|++++.+.+.+... .++.++ =+.+...+
T Consensus 7 ~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~--------------------~~~~~~~~Dv~~~~~v 66 (281)
T 3zv4_A 7 VALITGGASGLGRALVDRFVAEGARVAVLDKSAERLRELEVAHG--------------------GNAVGVVGDVRSLQDQ 66 (281)
T ss_dssp EEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTB--------------------TTEEEEECCTTCHHHH
T ss_pred EEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHcC--------------------CcEEEEEcCCCCHHHH
Confidence 455555 6889999999999999999999999888776653210 122222 23333455
Q ss_pred HHHHHhhcccCCCCCEEEcCCC
Q psy9637 83 DDFIDKLVPLLEKGDIIIDGGN 104 (490)
Q Consensus 83 ~~vl~~l~~~l~~g~iiId~s~ 104 (490)
+.+++.+.....+=|++|+...
T Consensus 67 ~~~~~~~~~~~g~iD~lvnnAg 88 (281)
T 3zv4_A 67 KRAAERCLAAFGKIDTLIPNAG 88 (281)
T ss_dssp HHHHHHHHHHHSCCCEEECCCC
T ss_pred HHHHHHHHHhcCCCCEEEECCC
Confidence 6666666554445577777654
|
| >2b0j_A 5,10-methenyltetrahydromethanopterin hydrogenase; rossmann fold, helix bundle, oxidoreductase; 1.75A {Methanocaldococcus jannaschii} SCOP: a.100.1.11 c.2.1.6 PDB: 3f47_A* 3daf_A* 3dag_A* 3f46_A* 3h65_A* | Back alignment and structure |
|---|
Probab=93.96 E-value=0.22 Score=48.01 Aligned_cols=108 Identities=18% Similarity=0.131 Sum_probs=80.3
Q ss_pred CeeccCCHHHHHhhCCCCcEEEEecCCCchHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccc---ccccC
Q psy9637 52 NIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLL---YVGCG 128 (490)
Q Consensus 52 ~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~---~ld~~ 128 (490)
+++.+++-.|+++. +|++|+-+|-+...-.+++.++++++.|.||.+.-|.++.......+.+.++.+. |-.+.
T Consensus 128 GVkVtsDD~EAvk~---AEi~IlftPfG~~t~~Iakkii~~lpEgAII~nTCTipp~~ly~~le~l~R~DvgIsS~HPaa 204 (358)
T 2b0j_A 128 GLKVTSDDREAVEG---ADIVITWLPKGNKQPDIIKKFADAIPEGAIVTHACTIPTTKFAKIFKDLGREDLNITSYHPGC 204 (358)
T ss_dssp TCEEESCHHHHHTT---CSEEEECCTTCTTHHHHHHHHGGGSCTTCEEEECSSSCHHHHHHHHHHTTCTTSEEEECBCSS
T ss_pred CcEeecchHHHhcC---CCEEEEecCCCCCcHHHHHHHHhhCcCCCEEecccCCCHHHHHHHHHHhCcccCCeeccCCCC
Confidence 45668888888887 9999999999988999999999999999999999999887776666665544332 33333
Q ss_pred CCCCccccccCCccCC-C-CCcchHHHHHHHHHhhCCceee
Q psy9637 129 VSGGEDGARYGPSLMP-G-GNPAAWPALKPIFQKLNPSFET 167 (490)
Q Consensus 129 vsGg~~~a~~G~~im~-G-G~~~a~~~v~~ll~~l~~~~~~ 167 (490)
|-|. .|.++.- + .+++.++++-++-++.+...+.
T Consensus 205 VPgt-----~Gq~~~g~~yAtEEqIeklveLaksa~k~ay~ 240 (358)
T 2b0j_A 205 VPEM-----KGQVYIAEGYASEEAVNKLYEIGKIARGKAFK 240 (358)
T ss_dssp CTTT-----CCCEEEEESSSCHHHHHHHHHHHHHHHSCEEE
T ss_pred CCCC-----CCccccccccCCHHHHHHHHHHHHHhCCCeEe
Confidence 3332 3332211 1 3678899999999999887654
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=93.94 E-value=0.18 Score=50.65 Aligned_cols=94 Identities=17% Similarity=0.198 Sum_probs=60.7
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHH-HcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFL-ANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~-~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
.+|.|+|.|.+|...+..+...|.+|++.++++++.+.+. +.|+. .+.-..+.+.+.+.....|+||-++.....++
T Consensus 189 ~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~lGa~--~v~~~~~~~~~~~~~~~~D~vid~~g~~~~~~ 266 (366)
T 1yqd_A 189 KHIGIVGLGGLGHVAVKFAKAFGSKVTVISTSPSKKEEALKNFGAD--SFLVSRDQEQMQAAAGTLDGIIDTVSAVHPLL 266 (366)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHTSCCS--EEEETTCHHHHHHTTTCEEEEEECCSSCCCSH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCc--eEEeccCHHHHHHhhCCCCEEEECCCcHHHHH
Confidence 4799999999999999999999999999999998887766 44432 12112333333222234688888877644455
Q ss_pred HHHHhhcccCCCCCEEEcCCC
Q psy9637 84 DFIDKLVPLLEKGDIIIDGGN 104 (490)
Q Consensus 84 ~vl~~l~~~l~~g~iiId~s~ 104 (490)
..++.+ .++-.++..+.
T Consensus 267 ~~~~~l----~~~G~iv~~g~ 283 (366)
T 1yqd_A 267 PLFGLL----KSHGKLILVGA 283 (366)
T ss_dssp HHHHHE----EEEEEEEECCC
T ss_pred HHHHHH----hcCCEEEEEcc
Confidence 544433 33444555543
|
| >3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A* | Back alignment and structure |
|---|
Probab=93.94 E-value=0.13 Score=51.28 Aligned_cols=122 Identities=15% Similarity=0.072 Sum_probs=66.6
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHcccC-CCCe--eccCCHHHHHhhCCCCcEEEEecCCC-
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGF-TVVAYNRTTAKVDSFLANEAK-GTNI--IGAHSLEELVKNLKKPRRVMMLVKAG- 79 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~g~~-~~~i--~~~~s~~e~v~~l~~~dvIil~vp~~- 79 (490)
.+|.|||+|..|..++.+|+..|. +++++|.+.-....+...... ...+ .-+....+.+..+ .|++-+..++..
T Consensus 35 ~~VlIvGaGGlGs~va~~La~aGVg~ItlvD~D~Ve~SNL~RQ~l~~~~diG~~Ka~aaa~~L~~i-nP~v~v~~~~~~i 113 (340)
T 3rui_A 35 TKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRI-FPLMDATGVKLSI 113 (340)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCBCCTTSTTTSTTCCGGGTTSBHHHHHHHHHHHH-CTTCEEEEECCCC
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEecCCEeccccccccccCChhhcChHHHHHHHHHHHHh-CCCCEEEEEeccc
Confidence 589999999999999999999997 688898864221111111000 0000 0112223333322 255555555421
Q ss_pred ----ch------HHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccC
Q psy9637 80 ----SA------VDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCG 128 (490)
Q Consensus 80 ----~~------v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~ 128 (490)
.. ...-.+.+...+..-|+|||++-.. ..-....+.+...++.++++.
T Consensus 114 ~~~g~~~~~~~~~~~~~~~l~~~l~~~DlVvd~tDn~-~tR~lin~~c~~~~~plI~aa 171 (340)
T 3rui_A 114 PMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLVDSR-ESRWLPSLLSNIENKTVINAA 171 (340)
T ss_dssp CCTTSCCSCHHHHHHHHHHHHHHHHHCSEEEECCSST-GGGHHHHHHHHHTTCEEEEEE
T ss_pred cccCcccchhhhhcCCHHHHHhhhccCCEEEecCCCH-HHHHHHHHHHHHcCCcEEEee
Confidence 00 0111122333344568999997654 333344477777888887753
|
| >3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=93.93 E-value=0.17 Score=47.75 Aligned_cols=82 Identities=16% Similarity=0.217 Sum_probs=52.4
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
+++-|.|. |-+|..+|+.|+++|++|++.+|++++.+++.+... .. ...+..=+.+...++
T Consensus 10 k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~---------------~~---~~~~~~D~~~~~~~~ 71 (261)
T 3n74_A 10 KVALITGAGSGFGEGMAKRFAKGGAKVVIVDRDKAGAERVAGEIG---------------DA---ALAVAADISKEADVD 71 (261)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC---------------TT---EEEEECCTTSHHHHH
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhC---------------Cc---eEEEEecCCCHHHHH
Confidence 35666764 789999999999999999999999988777654210 00 112222233334555
Q ss_pred HHHHhhcccCCCCCEEEcCCC
Q psy9637 84 DFIDKLVPLLEKGDIIIDGGN 104 (490)
Q Consensus 84 ~vl~~l~~~l~~g~iiId~s~ 104 (490)
++++.+...+.+=|++|++..
T Consensus 72 ~~~~~~~~~~g~id~li~~Ag 92 (261)
T 3n74_A 72 AAVEAALSKFGKVDILVNNAG 92 (261)
T ss_dssp HHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHhcCCCCEEEECCc
Confidence 666655554444466666543
|
| >1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A* | Back alignment and structure |
|---|
Probab=93.91 E-value=0.032 Score=56.07 Aligned_cols=120 Identities=13% Similarity=0.117 Sum_probs=69.1
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHccc-CCCCe--eccCCHHHHHhhCCCCcEEEEecCCCc
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGF-TVVAYNRTTAKVDSFLANEA-KGTNI--IGAHSLEELVKNLKKPRRVMMLVKAGS 80 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~g~-~~~~i--~~~~s~~e~v~~l~~~dvIil~vp~~~ 80 (490)
.+|.|||+|..|..++.+|+..|. +++++|.+.=....+..... ....+ .-+....+.+..+ .|++-+...+..
T Consensus 37 ~~VlivG~GGlG~~ia~~La~~Gvg~itlvD~d~V~~sNL~rq~~~~~~diG~~Ka~~~~~~l~~l-np~v~v~~~~~~- 114 (346)
T 1y8q_A 37 SRVLLVGLKGLGAEIAKNLILAGVKGLTMLDHEQVTPEDPGAQFLIRTGSVGRNRAEASLERAQNL-NPMVDVKVDTED- 114 (346)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBCCSSCGGGCTTSCSSCTTSBHHHHHHHHHHHT-CTTSEEEEECSC-
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEEEEECCCcchhhCCCCCccccccCcCCHHHHHHHHHHhH-CCCeEEEEEecc-
Confidence 589999999999999999999998 89999876321111111100 00000 0112223333332 256656666543
Q ss_pred hHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCC
Q psy9637 81 AVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSG 131 (490)
Q Consensus 81 ~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsG 131 (490)
+.+... ..+..-++||++.-. +..-..+.+.+...++.|+++.+.|
T Consensus 115 -~~~~~~---~~~~~~dvVv~~~d~-~~~r~~ln~~~~~~~ip~i~~~~~G 160 (346)
T 1y8q_A 115 -IEKKPE---SFFTQFDAVCLTCCS-RDVIVKVDQICHKNSIKFFTGDVFG 160 (346)
T ss_dssp -GGGCCH---HHHTTCSEEEEESCC-HHHHHHHHHHHHHTTCEEEEEEEEB
T ss_pred -cCcchH---HHhcCCCEEEEcCCC-HHHHHHHHHHHHHcCCCEEEEeecc
Confidence 111111 223455899998653 3444444577788899998887655
|
| >2d2i_A Glyceraldehyde 3-phosphate dehydrogenase; rossmann fold, protein-NADP+ complex, oxidoreductase; HET: NAP; 2.50A {Synechococcus SP} PDB: 2duu_A | Back alignment and structure |
|---|
Probab=93.88 E-value=0.16 Score=51.42 Aligned_cols=40 Identities=20% Similarity=0.305 Sum_probs=29.9
Q ss_pred CcEEEEcccHHHHHHHHHHHHCC---CeEEEE-eC-ChHHHHHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHG---FTVVAY-NR-TTAKVDSFL 44 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G---~~V~v~-dr-~~~~~~~l~ 44 (490)
+||||+|.|++|+.+.+.|.+++ ++|+.. |+ +++....+.
T Consensus 3 ikVgInGfGrIGr~vlR~l~~~~~~~veIVaInd~~d~~~~a~ll 47 (380)
T 2d2i_A 3 IRVAINGFGRIGRNFLRCWFGRQNTDLEVVAINNTSDARTAAHLL 47 (380)
T ss_dssp EEEEEECCSHHHHHHHHHHHHCSSCSEEEEEEECSSCHHHHHHHH
T ss_pred cEEEEECcCHHHHHHHHHHhcCCCCCEEEEEEecCCCHHHHHHhh
Confidence 58999999999999999998863 666544 54 555554444
|
| >3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis} | Back alignment and structure |
|---|
Probab=93.86 E-value=0.044 Score=54.11 Aligned_cols=37 Identities=22% Similarity=0.300 Sum_probs=32.3
Q ss_pred CCCCCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCCh
Q psy9637 1 MAAKGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTT 37 (490)
Q Consensus 1 M~~~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~ 37 (490)
|+...+|.|||.|..|...|..|+++|++|+++++++
T Consensus 1 M~~~~dvvIIG~G~~Gl~~A~~La~~G~~V~vlE~~~ 37 (369)
T 3dme_A 1 MSTDIDCIVIGAGVVGLAIARALAAGGHEVLVAEAAE 37 (369)
T ss_dssp --CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 5545689999999999999999999999999999874
|
| >4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A* | Back alignment and structure |
|---|
Probab=93.86 E-value=0.13 Score=50.25 Aligned_cols=73 Identities=19% Similarity=0.351 Sum_probs=57.6
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
+++.|||- ..+|.+||..|.+.|..|+++... +.++.+.+.+ +|+||.++.-+.-+.
T Consensus 180 k~vvViGRS~iVGkPla~LL~~~~ATVTi~Hs~-------------------T~dl~~~~~~---ADIvV~A~G~p~~i~ 237 (303)
T 4b4u_A 180 KHAVVVGRSAILGKPMAMMLLQANATVTICHSR-------------------TQNLPELVKQ---ADIIVGAVGKAELIQ 237 (303)
T ss_dssp CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT-------------------CSSHHHHHHT---CSEEEECSCSTTCBC
T ss_pred CEEEEEeccccccchHHHHHHhcCCEEEEecCC-------------------CCCHHHHhhc---CCeEEeccCCCCccc
Confidence 57999995 668999999999999999998643 4567777777 999999986653221
Q ss_pred HHHHhhcccCCCCCEEEcCCCC
Q psy9637 84 DFIDKLVPLLEKGDIIIDGGNS 105 (490)
Q Consensus 84 ~vl~~l~~~l~~g~iiId~s~~ 105 (490)
...+++|.+|||.|..
T Consensus 238 ------~d~vk~GavVIDVGin 253 (303)
T 4b4u_A 238 ------KDWIKQGAVVVDAGFH 253 (303)
T ss_dssp ------GGGSCTTCEEEECCCB
T ss_pred ------cccccCCCEEEEecee
Confidence 1357899999999964
|
| >1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A* | Back alignment and structure |
|---|
Probab=93.86 E-value=0.19 Score=52.48 Aligned_cols=112 Identities=16% Similarity=0.212 Sum_probs=63.9
Q ss_pred CCcEEEEcccHHHHH-HHHHHHHCCCeEEEEeCChH-HHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEec--CCC
Q psy9637 4 KGDIGLIGLAVMGQN-LILNMNDHGFTVVAYNRTTA-KVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLV--KAG 79 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~-lA~~L~~~G~~V~v~dr~~~-~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~v--p~~ 79 (490)
.++|.|||+|..|.+ +|+.|.+.|++|+++|.... ..+.+.+.|.. +..-.+... + +.+|+|++.- |.+
T Consensus 18 ~~~i~viG~G~sG~s~~A~~l~~~G~~V~~~D~~~~~~~~~l~~~gi~---~~~g~~~~~-~---~~a~~vv~s~~i~~~ 90 (475)
T 1p3d_A 18 VQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADGVVTQRLAQAGAK---IYIGHAEEH-I---EGASVVVVSSAIKDD 90 (475)
T ss_dssp CCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCSHHHHHHHHTTCE---EEESCCGGG-G---TTCSEEEECTTSCTT
T ss_pred CCEEEEEeecHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHhCCCE---EECCCCHHH-c---CCCCEEEECCCCCCC
Confidence 467999999999997 99999999999999997643 33455554432 211123322 2 3488888752 221
Q ss_pred ch-HHHH----------HHhhcccCC-CCCEEEcCCCCChHHHHHHHHHHHHccc
Q psy9637 80 SA-VDDF----------IDKLVPLLE-KGDIIIDGGNSEYQDTDRRSKALEAKGL 122 (490)
Q Consensus 80 ~~-v~~v----------l~~l~~~l~-~g~iiId~s~~~~~~~~~~~~~l~~~gi 122 (490)
.+ +... .+.+...+. ..-|-|-+||+.-.++.-+...+...|.
T Consensus 91 ~~~~~~a~~~~i~vl~~~~~l~~~~~~~~vI~VTGTnGKTTTt~ml~~iL~~~G~ 145 (475)
T 1p3d_A 91 NPELVTSKQKRIPVIQRAQMLAEIMRFRHGIAVAGTHGKTTTTAMISMIYTQAKL 145 (475)
T ss_dssp CHHHHHHHHTTCCEEEHHHHHHHHHHTSEEEEEESSSCHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHcCCcEEEHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHhCCC
Confidence 11 2111 111112221 1234566666654444444477777775
|
| >1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase; HET: NAD; 2.80A {Pyrobaculum islandicum} SCOP: c.2.1.7 c.58.1.1 | Back alignment and structure |
|---|
Probab=93.85 E-value=0.062 Score=55.25 Aligned_cols=112 Identities=13% Similarity=0.169 Sum_probs=70.6
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEE-EEeC----------ChHHHHHHHHcccC--------CCCeeccCCHHHHHhh
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVV-AYNR----------TTAKVDSFLANEAK--------GTNIIGAHSLEELVKN 65 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~-v~dr----------~~~~~~~l~~~g~~--------~~~i~~~~s~~e~v~~ 65 (490)
++|.|.|.|+||...+..|.+.|.+|+ +.|. +++.+.++.+.... ...-....+++++...
T Consensus 211 k~vaVqG~GnVG~~aa~~L~e~GakVVavsD~~G~i~dp~GlD~~~l~~~k~~~g~~~v~~y~~~~~~~~~~~~~~~~~~ 290 (421)
T 1v9l_A 211 KTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDINGVAYRKEGLNVELIQKNKGLTGPALVELFTTKDNAEFVKNPDAIFKL 290 (421)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSCEEECTTCCCTHHHHHTTTSCHHHHHHHHHHTSCCCCCSSTTGGGGC
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEEECCCcEEECCCCCCHHHHHHHHHhhCCccccccccccCceEeCCchhhhcC
Confidence 589999999999999999999999988 6666 56666554432110 0000011133454432
Q ss_pred CCCCcEEEEecCCCchHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccccc
Q psy9637 66 LKKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYV 125 (490)
Q Consensus 66 l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~l 125 (490)
++|+.+-|--.....++ -.+.| +=++|+...|... +.+..+.+.++|+.|+
T Consensus 291 --~~Dil~P~A~~~~I~~~----~a~~l-~ak~V~EgAN~p~--t~~a~~~l~~~Gi~~~ 341 (421)
T 1v9l_A 291 --DVDIFVPAAIENVIRGD----NAGLV-KARLVVEGANGPT--TPEAERILYERGVVVV 341 (421)
T ss_dssp --CCSEEEECSCSSCBCTT----TTTTC-CCSEEECCSSSCB--CHHHHHHHHTTTCEEE
T ss_pred --CccEEEecCcCCccchh----hHHHc-CceEEEecCCCcC--CHHHHHHHHHCCCEEe
Confidence 48998876644322222 22334 3479999998653 4555578889998775
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=93.83 E-value=0.35 Score=48.11 Aligned_cols=94 Identities=13% Similarity=0.159 Sum_probs=58.6
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeecc---CC-HHHHHhhC-----CCCcEEEEe
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGA---HS-LEELVKNL-----KKPRRVMML 75 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~---~s-~~e~v~~l-----~~~dvIil~ 75 (490)
.+|.|+|.|.+|...+..+...|.+|++.++++++.+.+.+.|+. .+.-. .+ .+++.+.. ...|+||-+
T Consensus 170 ~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~--~~~~~~~~~~~~~~i~~~~~~~~g~g~D~vid~ 247 (352)
T 1e3j_A 170 TTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGAD--VTLVVDPAKEEESSIIERIRSAIGDLPNVTIDC 247 (352)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCS--EEEECCTTTSCHHHHHHHHHHHSSSCCSEEEEC
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhCCC--EEEcCcccccHHHHHHHHhccccCCCCCEEEEC
Confidence 479999999999998888888999999999999998887766542 11111 11 12222111 236777777
Q ss_pred cCCCchHHHHHHhhcccCCCCCEEEcCCC
Q psy9637 76 VKAGSAVDDFIDKLVPLLEKGDIIIDGGN 104 (490)
Q Consensus 76 vp~~~~v~~vl~~l~~~l~~g~iiId~s~ 104 (490)
+.....+ +..+..+.++-.++..+.
T Consensus 248 ~g~~~~~----~~~~~~l~~~G~iv~~G~ 272 (352)
T 1e3j_A 248 SGNEKCI----TIGINITRTGGTLMLVGM 272 (352)
T ss_dssp SCCHHHH----HHHHHHSCTTCEEEECSC
T ss_pred CCCHHHH----HHHHHHHhcCCEEEEEec
Confidence 7553222 333334455555555543
|
| >1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6 | Back alignment and structure |
|---|
Probab=93.81 E-value=0.12 Score=49.19 Aligned_cols=96 Identities=17% Similarity=0.120 Sum_probs=62.6
Q ss_pred ceeecC-CCCcchhHHhhhhHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhccCcchhHHHHHHHHHhcccCC-CCC
Q psy9637 349 CDWVGE-QGAGHFVKMVHNGIEYGDMQLICEAYHLMTGALGMSHDEMSAVFEDWNKGELDSFLIEITKDILKFKDT-DGA 426 (490)
Q Consensus 349 ~~~~g~-~g~gh~vkmvhngiey~~m~~~~E~~~~~~~~~~~~~~~~~~~~~~w~~g~~~s~l~~~~~~~~~~~~~-~~~ 426 (490)
+.++|+ .|+++.+|+++|..-+..+++++|++.+.++ .|++ .. +++.++.+.-.+|+. .....+. .|. .|.
T Consensus 145 ~~~~~~~~g~~~~~kl~~n~~~~~~~~~~~Ea~~la~~-~G~~---~~-~~~~~~~~~g~~~~~-~~~~~~~-~~~~~g~ 217 (264)
T 1i36_A 145 IEVRGREPGDASAIKMLRSSYTKGVSALLWETLTAAHR-LGLE---ED-VLEMLEYTEGNDFRE-SAISRLK-SSCIHAR 217 (264)
T ss_dssp EEECSSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCH---HH-HHHHHHTTSCSSTHH-HHHHHHH-HHHHTHH
T ss_pred eEECCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCc---HH-HHHHHHHhcCccHHH-HHHHHhc-CCCCcch
Confidence 346787 5999999999999999999999999999887 8883 33 666676532123432 2222222 110 111
Q ss_pred cchhhhccccCCCcchHHHHHHHHhcCCCchhhHHH
Q psy9637 427 PLVEKIKDYAGQKGTGKWTAISALDYGVPVTLIGES 462 (490)
Q Consensus 427 ~~l~~i~~~~~~~g~g~w~~~~a~~~~~p~~~i~~a 462 (490)
. .+ -+-+..++.+.++ +|+|++.+.
T Consensus 218 ~---~~-------~~~~~~~~~a~~~-v~~p~~~~v 242 (264)
T 1i36_A 218 R---RY-------EEMKEVQDMLAEV-IDPVMPTCI 242 (264)
T ss_dssp H---HH-------HHHHHHHHHHHTT-SCCSHHHHH
T ss_pred h---hH-------HHHHHHHHHHHHh-cCchHHHHH
Confidence 1 00 1234666888899 999977654
|
| >3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber} | Back alignment and structure |
|---|
Probab=93.81 E-value=0.25 Score=47.46 Aligned_cols=83 Identities=12% Similarity=0.101 Sum_probs=52.9
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEe--cCCCch
Q psy9637 5 GDIGLIG-LAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMML--VKAGSA 81 (490)
Q Consensus 5 ~~IgiIG-lG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~--vp~~~~ 81 (490)
+++-|.| .|-+|..+|+.|+++|++|++.+|++++.+.+.+.-. .. ..++.++. +.+...
T Consensus 25 k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~---------------~~--~~~~~~~~~Dv~d~~~ 87 (279)
T 3sju_A 25 QTAFVTGVSSGIGLAVARTLAARGIAVYGCARDAKNVSAAVDGLR---------------AA--GHDVDGSSCDVTSTDE 87 (279)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH---------------TT--TCCEEEEECCTTCHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH---------------hc--CCcEEEEECCCCCHHH
Confidence 3455666 5889999999999999999999999888776554211 00 02333322 333345
Q ss_pred HHHHHHhhcccCCCCCEEEcCCC
Q psy9637 82 VDDFIDKLVPLLEKGDIIIDGGN 104 (490)
Q Consensus 82 v~~vl~~l~~~l~~g~iiId~s~ 104 (490)
++.+++.+.....+=|++|+...
T Consensus 88 v~~~~~~~~~~~g~id~lv~nAg 110 (279)
T 3sju_A 88 VHAAVAAAVERFGPIGILVNSAG 110 (279)
T ss_dssp HHHHHHHHHHHHCSCCEEEECCC
T ss_pred HHHHHHHHHHHcCCCcEEEECCC
Confidence 56666666554444567776543
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=93.81 E-value=0.37 Score=43.99 Aligned_cols=117 Identities=12% Similarity=0.112 Sum_probs=73.5
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccC---CCCee-ccCCHHHHHhhCCCCcEEEEecCCCc
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAK---GTNII-GAHSLEELVKNLKKPRRVMMLVKAGS 80 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~---~~~i~-~~~s~~e~v~~l~~~dvIil~vp~~~ 80 (490)
.+|--||+|. | .++..|++.+.+|+++|.+++.++.+.+.... ..++. ...+..+.....+..|+|++....
T Consensus 57 ~~vLDlGcG~-G-~~~~~la~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~~-- 132 (204)
T 3njr_A 57 ELLWDIGGGS-G-SVSVEWCLAGGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLPLPEAVFIGGGG-- 132 (204)
T ss_dssp CEEEEETCTT-C-HHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSCCCSEEEECSCC--
T ss_pred CEEEEecCCC-C-HHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCCCCCEEEECCcc--
Confidence 4788899986 4 45566666699999999999988766543110 11232 234444444444568999876522
Q ss_pred hHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccccccc
Q psy9637 81 AVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGC 127 (490)
Q Consensus 81 ~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~ 127 (490)
..+ +++.+...|++|-.++-.. ..+....+..+.+++.|......
T Consensus 133 ~~~-~l~~~~~~LkpgG~lv~~~-~~~~~~~~~~~~l~~~g~~i~~i 177 (204)
T 3njr_A 133 SQA-LYDRLWEWLAPGTRIVANA-VTLESETLLTQLHARHGGQLLRI 177 (204)
T ss_dssp CHH-HHHHHHHHSCTTCEEEEEE-CSHHHHHHHHHHHHHHCSEEEEE
T ss_pred cHH-HHHHHHHhcCCCcEEEEEe-cCcccHHHHHHHHHhCCCcEEEE
Confidence 344 7888888888876554332 23455556667777777554443
|
| >2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C* | Back alignment and structure |
|---|
Probab=93.80 E-value=0.041 Score=55.04 Aligned_cols=90 Identities=9% Similarity=0.169 Sum_probs=54.6
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHHCC---CeEEEEe-CC-hHHHHHHHHcccCCCCeeccC-CHHHHHhhCCCCcEEEEec
Q psy9637 4 KGDIGLIG-LAVMGQNLILNMNDHG---FTVVAYN-RT-TAKVDSFLANEAKGTNIIGAH-SLEELVKNLKKPRRVMMLV 76 (490)
Q Consensus 4 ~~~IgiIG-lG~MG~~lA~~L~~~G---~~V~v~d-r~-~~~~~~l~~~g~~~~~i~~~~-s~~e~v~~l~~~dvIil~v 76 (490)
|+||+|+| .|.+|..+.+.|.+++ ++++.++ ++ ..+ .+. ..+..+...+ ++.+ ++.+|+||+|+
T Consensus 3 ~~kV~I~GAtG~iG~~llr~L~~~~~p~~elv~i~s~~~~G~--~~~---~~~~~i~~~~~~~~~----~~~vDvVf~a~ 73 (336)
T 2r00_A 3 QFNVAIFGATGAVGETMLEVLQEREFPVDELFLLASERSEGK--TYR---FNGKTVRVQNVEEFD----WSQVHIALFSA 73 (336)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTTTTC--EEE---ETTEEEEEEEGGGCC----GGGCSEEEECS
T ss_pred ccEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEEECCCCCCC--cee---ecCceeEEecCChHH----hcCCCEEEECC
Confidence 57999999 9999999999999874 4566554 22 111 000 0011121111 1212 22389999999
Q ss_pred CCCchHHHHHHhhcccCCCCCEEEcCCCCC
Q psy9637 77 KAGSAVDDFIDKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 77 p~~~~v~~vl~~l~~~l~~g~iiId~s~~~ 106 (490)
|.. ...+....+ ++.|..+||.|..+
T Consensus 74 g~~-~s~~~a~~~---~~~G~~vId~s~~~ 99 (336)
T 2r00_A 74 GGE-LSAKWAPIA---AEAGVVVIDNTSHF 99 (336)
T ss_dssp CHH-HHHHHHHHH---HHTTCEEEECSSTT
T ss_pred Cch-HHHHHHHHH---HHcCCEEEEcCCcc
Confidence 985 444444443 34688999998753
|
| >4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A | Back alignment and structure |
|---|
Probab=93.77 E-value=0.25 Score=46.94 Aligned_cols=81 Identities=12% Similarity=0.133 Sum_probs=51.3
Q ss_pred cEEEEccc---HHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEe--cCCCc
Q psy9637 6 DIGLIGLA---VMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMML--VKAGS 80 (490)
Q Consensus 6 ~IgiIGlG---~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~--vp~~~ 80 (490)
.+-|-|.+ -+|..+|+.|++.|++|++.+|+++..+++.+.- +++...++.++. |.+..
T Consensus 8 ~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~~~----------------~~~~~~~~~~~~~Dv~~~~ 71 (256)
T 4fs3_A 8 TYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKERSRKELEKLL----------------EQLNQPEAHLYQIDVQSDE 71 (256)
T ss_dssp EEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHH----------------GGGTCSSCEEEECCTTCHH
T ss_pred EEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH----------------HhcCCCcEEEEEccCCCHH
Confidence 34455763 5999999999999999999999987766654321 111112333322 34445
Q ss_pred hHHHHHHhhcccCCCCCEEEcC
Q psy9637 81 AVDDFIDKLVPLLEKGDIIIDG 102 (490)
Q Consensus 81 ~v~~vl~~l~~~l~~g~iiId~ 102 (490)
.+++.++.+.....+=|++|+.
T Consensus 72 ~v~~~~~~~~~~~G~iD~lvnn 93 (256)
T 4fs3_A 72 EVINGFEQIGKDVGNIDGVYHS 93 (256)
T ss_dssp HHHHHHHHHHHHHCCCSEEEEC
T ss_pred HHHHHHHHHHHHhCCCCEEEec
Confidence 6666666666555555667654
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=93.77 E-value=0.3 Score=49.72 Aligned_cols=98 Identities=8% Similarity=0.062 Sum_probs=59.7
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHcccCCCCeec--cCCHHHHHhhC---CCCcEEEEecCC
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGF-TVVAYNRTTAKVDSFLANEAKGTNIIG--AHSLEELVKNL---KKPRRVMMLVKA 78 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~g~~~~~i~~--~~s~~e~v~~l---~~~dvIil~vp~ 78 (490)
.+|.|+|.|.+|...+..+...|. +|++.++++++.+.+.+.|+. .+.- ..++.+.+..+ ...|+||-++..
T Consensus 215 ~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa~--~vi~~~~~~~~~~i~~~t~g~g~D~vid~~g~ 292 (404)
T 3ip1_A 215 DNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKELGAD--HVIDPTKENFVEAVLDYTNGLGAKLFLEATGV 292 (404)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCS--EEECTTTSCHHHHHHHHTTTCCCSEEEECSSC
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCC--EEEcCCCCCHHHHHHHHhCCCCCCEEEECCCC
Confidence 479999999999988888888999 899999999998887776643 1111 12233322221 136777777765
Q ss_pred Cc-hHHHHHHhhcccCCCCCEEEcCCC
Q psy9637 79 GS-AVDDFIDKLVPLLEKGDIIIDGGN 104 (490)
Q Consensus 79 ~~-~v~~vl~~l~~~l~~g~iiId~s~ 104 (490)
.. .....++.+...+.++-.++..+.
T Consensus 293 ~~~~~~~~~~~l~~~~~~~G~iv~~G~ 319 (404)
T 3ip1_A 293 PQLVWPQIEEVIWRARGINATVAIVAR 319 (404)
T ss_dssp HHHHHHHHHHHHHHCSCCCCEEEECSC
T ss_pred cHHHHHHHHHHHHhccCCCcEEEEeCC
Confidence 31 122222222122255555555554
|
| >2x5j_O E4PDH, D-erythrose-4-phosphate dehydrogenase; oxidoreductase, hydride transfer, aldehyde dehydrogenase, PY biosynthesis; 2.30A {Escherichia coli} PDB: 2xf8_A* 2x5k_O* | Back alignment and structure |
|---|
Probab=93.76 E-value=0.14 Score=51.15 Aligned_cols=95 Identities=17% Similarity=0.250 Sum_probs=55.7
Q ss_pred CcEEEEcccHHHHHHHHHHHH---C-CCeEEEE-eC-ChHHHHHHHHcccC------------------CCCeec--cCC
Q psy9637 5 GDIGLIGLAVMGQNLILNMND---H-GFTVVAY-NR-TTAKVDSFLANEAK------------------GTNIIG--AHS 58 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~---~-G~~V~v~-dr-~~~~~~~l~~~g~~------------------~~~i~~--~~s 58 (490)
+||||+|.|++|+.+.+.|.+ + .++|+.. |+ +++....+.+.... +..+.. ..+
T Consensus 3 ikVgI~G~G~iGr~l~r~l~~~~~~~~~eivai~~~~~~~~~~~ll~~ds~~g~~~~~v~~~~~~l~v~g~~i~v~~~~d 82 (339)
T 2x5j_O 3 VRVAINGFGRIGRNVVRALYESGRRAEITVVAINELADAAGMAHLLKYDTSHGRFAWEVRQERDQLFVGDDAIRVLHERS 82 (339)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTSGGGTEEEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSS
T ss_pred eEEEEECcCHHHHHHHHHHHcCCCCCCEEEEEEeCCCCHHHHHHHhcccccCCCCCceEEEcCCeeEECCEEEEEEecCC
Confidence 589999999999999999987 4 5676644 44 55555555431100 111111 134
Q ss_pred HHHHH-hhCCCCcEEEEecCCCchHHHHHHhhcccCCCCC--EEEcCCC
Q psy9637 59 LEELV-KNLKKPRRVMMLVKAGSAVDDFIDKLVPLLEKGD--IIIDGGN 104 (490)
Q Consensus 59 ~~e~v-~~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~--iiId~s~ 104 (490)
++++. .++ .+|+||.|+|.... .+.....+ +.|. +|||.+.
T Consensus 83 p~~l~~~~~-~vDvV~e~tg~~~s-~e~a~~~l---~~GakkVVId~~a 126 (339)
T 2x5j_O 83 LQSLPWREL-GVDVVLDCTGVYGS-REHGEAHI---AAGAKKVLFSHPG 126 (339)
T ss_dssp GGGCCHHHH-TCSEEEECSSSCCS-HHHHHHHH---HTTCSEEEESSCC
T ss_pred hHHCccccc-CCCEEEECCCcccc-HHHHHHHH---HcCCCEEEEeccc
Confidence 44431 100 37999999988643 33333333 3343 6888765
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=93.75 E-value=0.11 Score=49.73 Aligned_cols=82 Identities=10% Similarity=0.169 Sum_probs=55.7
Q ss_pred CcEEEE--cccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEe--cCCCc
Q psy9637 5 GDIGLI--GLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMML--VKAGS 80 (490)
Q Consensus 5 ~~IgiI--GlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~--vp~~~ 80 (490)
-|+.+| |.+-+|..+|+.|++.|.+|+++||++++++++.++-. +. ..+++.+. |.+..
T Consensus 7 gKvalVTGas~GIG~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~i~---------------~~--g~~~~~~~~Dvt~~~ 69 (254)
T 4fn4_A 7 NKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQELR---------------GM--GKEVLGVKADVSKKK 69 (254)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH---------------HT--TCCEEEEECCTTSHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHH---------------hc--CCcEEEEEccCCCHH
Confidence 366666 45779999999999999999999999988877654311 00 02333332 34445
Q ss_pred hHHHHHHhhcccCCCCCEEEcCC
Q psy9637 81 AVDDFIDKLVPLLEKGDIIIDGG 103 (490)
Q Consensus 81 ~v~~vl~~l~~~l~~g~iiId~s 103 (490)
.++.+++.+.....+=|++|+..
T Consensus 70 ~v~~~~~~~~~~~G~iDiLVNNA 92 (254)
T 4fn4_A 70 DVEEFVRRTFETYSRIDVLCNNA 92 (254)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECC
T ss_pred HHHHHHHHHHHHcCCCCEEEECC
Confidence 66777777766655567887754
|
| >2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1 | Back alignment and structure |
|---|
Probab=93.74 E-value=0.041 Score=57.44 Aligned_cols=106 Identities=14% Similarity=0.155 Sum_probs=70.9
Q ss_pred CcEEEEccc----HHHHHHHHHHHHCC-CeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCC
Q psy9637 5 GDIGLIGLA----VMGQNLILNMNDHG-FTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAG 79 (490)
Q Consensus 5 ~~IgiIGlG----~MG~~lA~~L~~~G-~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~ 79 (490)
.+|+|||.+ ++|..+.++|.+.| +.|+..|+....+ ..+..+.|+.|+.+. +|++++++|..
T Consensus 9 ~siAVvGas~~~~~~g~~v~~~l~~~g~~~v~pVnP~~~~i----------~G~~~y~sl~~lp~~---~Dlavi~vp~~ 75 (457)
T 2csu_A 9 KGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKEEEV----------QGVKAYKSVKDIPDE---IDLAIIVVPKR 75 (457)
T ss_dssp SEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSCSEE----------TTEECBSSTTSCSSC---CSEEEECSCHH
T ss_pred CeEEEECcCCCCCchHHHHHHHHHHcCCCEEEEECCCCCeE----------CCEeccCCHHHcCCC---CCEEEEecCHH
Confidence 579999998 89999999999985 6776666552211 123467788887654 89999999994
Q ss_pred chHHHHHHhhcccCCCCCEEEcCCCCChH--H-----HHHHHHHHHHccccccc
Q psy9637 80 SAVDDFIDKLVPLLEKGDIIIDGGNSEYQ--D-----TDRRSKALEAKGLLYVG 126 (490)
Q Consensus 80 ~~v~~vl~~l~~~l~~g~iiId~s~~~~~--~-----~~~~~~~l~~~gi~~ld 126 (490)
.+.++++++...- ...+|+ .+...++ + ..+..+.+++.|++++.
T Consensus 76 -~~~~~v~e~~~~G-i~~vv~-~s~G~~e~g~~g~~~~~~l~~~a~~~g~~viG 126 (457)
T 2csu_A 76 -FVKDTLIQCGEKG-VKGVVI-ITAGFGETGEEGKREEKELVEIAHKYGMRIIG 126 (457)
T ss_dssp -HHHHHHHHHHHHT-CCEEEE-CCCSSTTSCHHHHHHHHHHHHHHHHHTCEEEC
T ss_pred -HHHHHHHHHHHcC-CCEEEE-ecCCCCccccccHHHHHHHHHHHHHcCCEEEc
Confidence 7777777776542 222333 3333322 1 34444667778988874
|
| >3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri} | Back alignment and structure |
|---|
Probab=93.73 E-value=0.042 Score=47.06 Aligned_cols=71 Identities=21% Similarity=0.308 Sum_probs=43.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHHC-CCeEEEE-eCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCC
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDH-GFTVVAY-NRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAG 79 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~-G~~V~v~-dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~ 79 (490)
+.++.|||.|..|..++..|.++ ||+|++| |.++++... ...+.++...+++.++++.. ..|.|++++|..
T Consensus 4 ~~~vlIiGaG~~g~~l~~~l~~~~g~~vvg~~d~~~~~~g~----~i~g~pV~g~~~l~~~~~~~-~id~viia~~~~ 76 (141)
T 3nkl_A 4 KKKVLIYGAGSAGLQLANMLRQGKEFHPIAFIDDDRKKHKT----TMQGITIYRPKYLERLIKKH-CISTVLLAVPSA 76 (141)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHSSSEEEEEEECSCGGGTTC----EETTEEEECGGGHHHHHHHH-TCCEEEECCTTS
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCcEEEEEEECCcccCCC----EecCeEEECHHHHHHHHHHC-CCCEEEEeCCCC
Confidence 45799999999999999999876 8888865 666542110 00011121233444444321 256777777753
|
| >1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=93.72 E-value=0.06 Score=53.85 Aligned_cols=37 Identities=19% Similarity=0.363 Sum_probs=32.8
Q ss_pred CCCCCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCCh
Q psy9637 1 MAAKGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTT 37 (490)
Q Consensus 1 M~~~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~ 37 (490)
|+...+|.|||.|..|...|..|+++|++|+++|++.
T Consensus 2 m~~~~dVvIIGgGi~Gl~~A~~La~~G~~V~lle~~~ 38 (382)
T 1y56_B 2 LPEKSEIVVIGGGIVGVTIAHELAKRGEEVTVIEKRF 38 (382)
T ss_dssp CCSBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 4344689999999999999999999999999999863
|
| >3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP complex, amino-acid biosynthesis; HET: NAP; 2.20A {Candida albicans} | Back alignment and structure |
|---|
Probab=93.67 E-value=0.044 Score=55.73 Aligned_cols=95 Identities=16% Similarity=0.197 Sum_probs=54.5
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHHCC-CeEE-EEe-C-ChH-HHHHHHHc--------ccCCCCeeccCCHHHHHhhCCCC
Q psy9637 4 KGDIGLIG-LAVMGQNLILNMNDHG-FTVV-AYN-R-TTA-KVDSFLAN--------EAKGTNIIGAHSLEELVKNLKKP 69 (490)
Q Consensus 4 ~~~IgiIG-lG~MG~~lA~~L~~~G-~~V~-v~d-r-~~~-~~~~l~~~--------g~~~~~i~~~~s~~e~v~~l~~~ 69 (490)
++|||||| .|..|.-|.+.|.++- .++. ++. + +.- ++...... +.....+... +..+..+. +
T Consensus 19 ~~kVaIvGAtG~vG~ell~lL~~hp~~el~~l~aS~~saGk~~~~~~~~~~~~~~p~~~~~~~v~~~-~~~~~~~~---~ 94 (381)
T 3hsk_A 19 VKKAGVLGATGSVGQRFILLLSKHPEFEIHALGASSRSAGKKYKDAASWKQTETLPETEQDIVVQEC-KPEGNFLE---C 94 (381)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEECTTTTTSBHHHHCCCCCSSCCCHHHHTCBCEES-SSCTTGGG---C
T ss_pred ccEEEEECCCChHHHHHHHHHHcCCCceEEEeeccccccCCCHHHhcccccccccccccccceEEeC-chhhhccc---C
Confidence 46899999 6999999999888764 3554 342 2 211 11111000 0001111111 11111233 8
Q ss_pred cEEEEecCCCchHHHHHHhhcccCCCCCEEEcCCCCC
Q psy9637 70 RRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 70 dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~s~~~ 106 (490)
|+||+|+|.+ ...+....+ ++.|..|||.|+.+
T Consensus 95 Dvvf~alp~~-~s~~~~~~~---~~~G~~VIDlSa~f 127 (381)
T 3hsk_A 95 DVVFSGLDAD-VAGDIEKSF---VEAGLAVVSNAKNY 127 (381)
T ss_dssp SEEEECCCHH-HHHHHHHHH---HHTTCEEEECCSTT
T ss_pred CEEEECCChh-HHHHHHHHH---HhCCCEEEEcCCcc
Confidence 9999999986 555555554 34689999999854
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=93.65 E-value=0.17 Score=47.98 Aligned_cols=84 Identities=17% Similarity=0.167 Sum_probs=54.4
Q ss_pred CcEEEEcc-cH-HHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEe--cCCCc
Q psy9637 5 GDIGLIGL-AV-MGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMML--VKAGS 80 (490)
Q Consensus 5 ~~IgiIGl-G~-MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~--vp~~~ 80 (490)
+++-|.|. |. +|..+|+.|+++|++|++.+|+.++.+.+.+.-. .....++.++. +.+..
T Consensus 23 k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~----------------~~~~~~~~~~~~Dl~~~~ 86 (266)
T 3o38_A 23 KVVLVTAAAGTGIGSTTARRALLEGADVVISDYHERRLGETRDQLA----------------DLGLGRVEAVVCDVTSTE 86 (266)
T ss_dssp CEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH----------------TTCSSCEEEEECCTTCHH
T ss_pred CEEEEECCCCCchHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHH----------------hcCCCceEEEEeCCCCHH
Confidence 45778898 74 9999999999999999999999888776554211 00012333333 33334
Q ss_pred hHHHHHHhhcccCCCCCEEEcCCC
Q psy9637 81 AVDDFIDKLVPLLEKGDIIIDGGN 104 (490)
Q Consensus 81 ~v~~vl~~l~~~l~~g~iiId~s~ 104 (490)
.++.+++.+.....+=|++|+...
T Consensus 87 ~v~~~~~~~~~~~g~id~li~~Ag 110 (266)
T 3o38_A 87 AVDALITQTVEKAGRLDVLVNNAG 110 (266)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHHHHhCCCcEEEECCC
Confidence 556666666554444567776644
|
| >1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=93.61 E-value=0.33 Score=45.59 Aligned_cols=40 Identities=13% Similarity=0.151 Sum_probs=33.9
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHH
Q psy9637 5 GDIGLIG-LAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFL 44 (490)
Q Consensus 5 ~~IgiIG-lG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~ 44 (490)
+++-|.| .|.+|..+++.|++.|++|++.+|++++.+.+.
T Consensus 6 k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~ 46 (245)
T 1uls_A 6 KAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAA 46 (245)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 4566666 589999999999999999999999988776654
|
| >3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A | Back alignment and structure |
|---|
Probab=93.59 E-value=0.27 Score=46.37 Aligned_cols=85 Identities=13% Similarity=0.208 Sum_probs=53.2
Q ss_pred cEEEEc-ccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEec--CCCchH
Q psy9637 6 DIGLIG-LAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLV--KAGSAV 82 (490)
Q Consensus 6 ~IgiIG-lG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~v--p~~~~v 82 (490)
++-|.| .|-+|..+|+.|++.|++|++.+|++++.+.+.+.- .+.-. .....+..-+ .+...+
T Consensus 14 ~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~------------~~~~~--~~~~~~~~D~~~~~~~~~ 79 (252)
T 3f1l_A 14 IILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHI------------NEETG--RQPQWFILDLLTCTSENC 79 (252)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH------------HHHHS--CCCEEEECCTTTCCHHHH
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH------------HhhcC--CCceEEEEecccCCHHHH
Confidence 455556 588999999999999999999999998877654321 11111 0123333323 333456
Q ss_pred HHHHHhhcccCCCCCEEEcCCC
Q psy9637 83 DDFIDKLVPLLEKGDIIIDGGN 104 (490)
Q Consensus 83 ~~vl~~l~~~l~~g~iiId~s~ 104 (490)
+++++.+.....+=|++|+...
T Consensus 80 ~~~~~~~~~~~g~id~lv~nAg 101 (252)
T 3f1l_A 80 QQLAQRIAVNYPRLDGVLHNAG 101 (252)
T ss_dssp HHHHHHHHHHCSCCSEEEECCC
T ss_pred HHHHHHHHHhCCCCCEEEECCc
Confidence 6666666555545577776643
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=93.57 E-value=0.088 Score=51.28 Aligned_cols=92 Identities=18% Similarity=0.185 Sum_probs=59.7
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
.+|.|+|. |.+|...+..+...|.+|++.++++++.+.+.+.|.. .+.-..+..++.+.+...|+||- +.. ..++
T Consensus 127 ~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~--~~~~~~~~~~~~~~~~~~d~vid-~g~-~~~~ 202 (302)
T 1iz0_A 127 EKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAE--EAATYAEVPERAKAWGGLDLVLE-VRG-KEVE 202 (302)
T ss_dssp CEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCS--EEEEGGGHHHHHHHTTSEEEEEE-CSC-TTHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCCC--EEEECCcchhHHHHhcCceEEEE-CCH-HHHH
Confidence 57999998 9999999999989999999999999988877665542 11111111345544455788887 655 3333
Q ss_pred HHHHhhcccCCCCCEEEcCCC
Q psy9637 84 DFIDKLVPLLEKGDIIIDGGN 104 (490)
Q Consensus 84 ~vl~~l~~~l~~g~iiId~s~ 104 (490)
. ....+.++-.++..+.
T Consensus 203 ~----~~~~l~~~G~~v~~g~ 219 (302)
T 1iz0_A 203 E----SLGLLAHGGRLVYIGA 219 (302)
T ss_dssp H----HHTTEEEEEEEEEC--
T ss_pred H----HHHhhccCCEEEEEeC
Confidence 3 3334444555555553
|
| >1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=93.57 E-value=0.16 Score=47.26 Aligned_cols=41 Identities=22% Similarity=0.266 Sum_probs=35.2
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLA 45 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~ 45 (490)
++|-|.|. |.+|..+++.|++.|++|++.+|++++.+.+.+
T Consensus 8 ~~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~ 49 (244)
T 1cyd_A 8 LRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAK 49 (244)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 46778875 999999999999999999999999887766543
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=93.55 E-value=0.088 Score=52.43 Aligned_cols=90 Identities=14% Similarity=0.201 Sum_probs=64.0
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
.+|.|+|+|.+|...+..+...|.+|++.++++++.+.+.+.|+. .+. .+.+++.+ ..|+||-++......+.
T Consensus 178 ~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~--~v~--~~~~~~~~---~~D~vid~~g~~~~~~~ 250 (348)
T 3two_A 178 TKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDALSMGVK--HFY--TDPKQCKE---ELDFIISTIPTHYDLKD 250 (348)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTHHHHHHTTCS--EEE--SSGGGCCS---CEEEEEECCCSCCCHHH
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhcCCC--eec--CCHHHHhc---CCCEEEECCCcHHHHHH
Confidence 579999999999998888888999999999999999888776653 221 34333322 47999998877545444
Q ss_pred HHHhhcccCCCCCEEEcCCCC
Q psy9637 85 FIDKLVPLLEKGDIIIDGGNS 105 (490)
Q Consensus 85 vl~~l~~~l~~g~iiId~s~~ 105 (490)
.++ .+.++-.++..+..
T Consensus 251 ~~~----~l~~~G~iv~~G~~ 267 (348)
T 3two_A 251 YLK----LLTYNGDLALVGLP 267 (348)
T ss_dssp HHT----TEEEEEEEEECCCC
T ss_pred HHH----HHhcCCEEEEECCC
Confidence 443 44555566666543
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=93.55 E-value=0.37 Score=48.35 Aligned_cols=95 Identities=14% Similarity=0.140 Sum_probs=59.7
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHcccCCCCeecc---CCHHHHHhhC--CCCcEEEEecCC
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGF-TVVAYNRTTAKVDSFLANEAKGTNIIGA---HSLEELVKNL--KKPRRVMMLVKA 78 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~g~~~~~i~~~---~s~~e~v~~l--~~~dvIil~vp~ 78 (490)
.+|.|+|.|.+|...+..+...|. +|++.++++++.+.+.+.|+. .-+... .++.+.+..+ ...|+||-++..
T Consensus 197 ~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~-~vi~~~~~~~~~~~~v~~~~~~g~Dvvid~~G~ 275 (376)
T 1e3i_A 197 STCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGAT-DCLNPRELDKPVQDVITELTAGGVDYSLDCAGT 275 (376)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCS-EEECGGGCSSCHHHHHHHHHTSCBSEEEESSCC
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCc-EEEccccccchHHHHHHHHhCCCccEEEECCCC
Confidence 479999999999998888888998 899999999998887766542 001111 2233333221 136788877754
Q ss_pred CchHHHHHHhhcccCCCC-CEEEcCCC
Q psy9637 79 GSAVDDFIDKLVPLLEKG-DIIIDGGN 104 (490)
Q Consensus 79 ~~~v~~vl~~l~~~l~~g-~iiId~s~ 104 (490)
... ++..+..+.++ -.++..+.
T Consensus 276 ~~~----~~~~~~~l~~~~G~iv~~G~ 298 (376)
T 1e3i_A 276 AQT----LKAAVDCTVLGWGSCTVVGA 298 (376)
T ss_dssp HHH----HHHHHHTBCTTTCEEEECCC
T ss_pred HHH----HHHHHHHhhcCCCEEEEECC
Confidence 322 33334445555 55555554
|
| >3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=93.52 E-value=0.24 Score=47.44 Aligned_cols=84 Identities=15% Similarity=0.296 Sum_probs=52.9
Q ss_pred cEEEE-c-ccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 6 DIGLI-G-LAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 6 ~IgiI-G-lG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
|+.+| | .|-+|..+|+.|++.|++|++.+|++++.+.+.+.- .+.-. ....+.+=+.+...++
T Consensus 29 k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~------------~~~~~---~~~~~~~Dv~d~~~v~ 93 (270)
T 3ftp_A 29 QVAIVTGASRGIGRAIALELARRGAMVIGTATTEAGAEGIGAAF------------KQAGL---EGRGAVLNVNDATAVD 93 (270)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH------------HHHTC---CCEEEECCTTCHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH------------HhcCC---cEEEEEEeCCCHHHHH
Confidence 44455 4 689999999999999999999999988777654321 11000 1223333344444566
Q ss_pred HHHHhhcccCCCCCEEEcCCC
Q psy9637 84 DFIDKLVPLLEKGDIIIDGGN 104 (490)
Q Consensus 84 ~vl~~l~~~l~~g~iiId~s~ 104 (490)
.+++.+.....+=|++|+...
T Consensus 94 ~~~~~~~~~~g~iD~lvnnAg 114 (270)
T 3ftp_A 94 ALVESTLKEFGALNVLVNNAG 114 (270)
T ss_dssp HHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHcCCCCEEEECCC
Confidence 666666554444567776543
|
| >3pzr_A Aspartate-semialdehyde dehydrogenase; NADP, oxidoreductase-oxidoreductase inhibitor complex; HET: NAP; 1.75A {Vibrio cholerae} PDB: 1mc4_A 1mb4_A* 3q0e_A | Back alignment and structure |
|---|
Probab=93.48 E-value=0.14 Score=51.89 Aligned_cols=92 Identities=17% Similarity=0.240 Sum_probs=53.3
Q ss_pred CcEEEEcc-cHHHHHHHH-HHHHCCC---eEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCC
Q psy9637 5 GDIGLIGL-AVMGQNLIL-NMNDHGF---TVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAG 79 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~-~L~~~G~---~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~ 79 (490)
|||||||. |..|.-|.+ .|.++.+ ++..+.-+. .-+.+.+.......+...++++++ +. +|+||+|+|.+
T Consensus 1 ~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~~~ss~~-aG~~~~~~~~~~~~~~~~~~~~~~-~~---~Dvvf~a~~~~ 75 (370)
T 3pzr_A 1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQ-IGVPAPNFGKDAGMLHDAFDIESL-KQ---LDAVITCQGGS 75 (370)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSS-TTSBCCCSSSCCCBCEETTCHHHH-TT---CSEEEECSCHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCCCceEEEEEeccc-cCcCHHHhCCCceEEEecCChhHh-cc---CCEEEECCChH
Confidence 58999995 999999999 6666653 455443221 111111111111122222344443 33 89999999985
Q ss_pred chHHHHHHhhcccCCCC--CEEEcCCCC
Q psy9637 80 SAVDDFIDKLVPLLEKG--DIIIDGGNS 105 (490)
Q Consensus 80 ~~v~~vl~~l~~~l~~g--~iiId~s~~ 105 (490)
...+....+. ..| .+|||.|+.
T Consensus 76 -~s~~~~~~~~---~~G~k~~VID~ss~ 99 (370)
T 3pzr_A 76 -YTEKVYPALR---QAGWKGYWIDAAST 99 (370)
T ss_dssp -HHHHHHHHHH---HTTCCCEEEECSST
T ss_pred -HHHHHHHHHH---HCCCCEEEEeCCch
Confidence 4555555443 356 489999874
|
| >1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=93.48 E-value=0.17 Score=49.59 Aligned_cols=33 Identities=15% Similarity=0.347 Sum_probs=29.7
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHHCCCeEEEEeCC
Q psy9637 4 KGDIGLIG-LAVMGQNLILNMNDHGFTVVAYNRT 36 (490)
Q Consensus 4 ~~~IgiIG-lG~MG~~lA~~L~~~G~~V~v~dr~ 36 (490)
||+|.|.| .|.+|..++..|++.|++|++.+|+
T Consensus 1 M~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~ 34 (347)
T 1orr_A 1 MAKLLITGGCGFLGSNLASFALSQGIDLIVFDNL 34 (347)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred CcEEEEeCCCchhHHHHHHHHHhCCCEEEEEeCC
Confidence 36899998 6999999999999999999999874
|
| >3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A* | Back alignment and structure |
|---|
Probab=93.44 E-value=0.19 Score=46.80 Aligned_cols=41 Identities=27% Similarity=0.405 Sum_probs=35.1
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLA 45 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~ 45 (490)
++|-|.|. |.+|..+++.|++.|++|++.+|++++.+.+.+
T Consensus 8 k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~ 49 (244)
T 3d3w_A 8 RRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVR 49 (244)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred cEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 46778875 899999999999999999999999887766543
|
| >4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A* | Back alignment and structure |
|---|
Probab=93.44 E-value=0.044 Score=54.13 Aligned_cols=66 Identities=14% Similarity=0.211 Sum_probs=45.0
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCee-ccCCHHHHHhhCCCCcEEEEecC
Q psy9637 4 KGDIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNII-GAHSLEELVKNLKKPRRVMMLVK 77 (490)
Q Consensus 4 ~~~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~-~~~s~~e~v~~l~~~dvIil~vp 77 (490)
+|+|.|.|. |.+|..++..|++.|++|++.+|+++. .+.. -+. -..+.+++.+.++.+|+||-+..
T Consensus 19 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~------~~~~--~~~~Dl~d~~~~~~~~~~~d~vih~A~ 86 (347)
T 4id9_A 19 SHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPSG------TGGE--EVVGSLEDGQALSDAIMGVSAVLHLGA 86 (347)
T ss_dssp --CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCCS------SCCS--EEESCTTCHHHHHHHHTTCSEEEECCC
T ss_pred CCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCC------CCcc--EEecCcCCHHHHHHHHhCCCEEEECCc
Confidence 368999987 999999999999999999999998654 1111 000 12344444444455888887654
|
| >3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A* | Back alignment and structure |
|---|
Probab=93.41 E-value=0.3 Score=46.27 Aligned_cols=40 Identities=13% Similarity=0.163 Sum_probs=33.5
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHH
Q psy9637 5 GDIGLIG-LAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFL 44 (490)
Q Consensus 5 ~~IgiIG-lG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~ 44 (490)
+++-|.| .|.+|..+++.|+++|++|++.+|++++.+.+.
T Consensus 8 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~ 48 (263)
T 3ai3_A 8 KVAVITGSSSGIGLAIAEGFAKEGAHIVLVARQVDRLHEAA 48 (263)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHH
Confidence 3466666 589999999999999999999999988766554
|
| >3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=93.41 E-value=0.27 Score=45.99 Aligned_cols=85 Identities=15% Similarity=0.152 Sum_probs=52.7
Q ss_pred CCCCCcEEEEc-ccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCC
Q psy9637 1 MAAKGDIGLIG-LAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAG 79 (490)
Q Consensus 1 M~~~~~IgiIG-lG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~ 79 (490)
|+ ++++-|.| .|-+|..+|+.|++.|++|++.+|++++.+.+.+.. .. ....+..=+.+.
T Consensus 1 Ms-~k~vlVTGas~GIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~----------------~~--~~~~~~~D~~~~ 61 (235)
T 3l6e_A 1 MS-LGHIIVTGAGSGLGRALTIGLVERGHQVSMMGRRYQRLQQQELLL----------------GN--AVIGIVADLAHH 61 (235)
T ss_dssp ---CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH----------------GG--GEEEEECCTTSH
T ss_pred CC-CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh----------------cC--CceEEECCCCCH
Confidence 54 24566777 488999999999999999999999988877654321 10 012222223333
Q ss_pred chHHHHHHhhcccCCCCCEEEcCCC
Q psy9637 80 SAVDDFIDKLVPLLEKGDIIIDGGN 104 (490)
Q Consensus 80 ~~v~~vl~~l~~~l~~g~iiId~s~ 104 (490)
..++.+++.+.....+=|++|+...
T Consensus 62 ~~v~~~~~~~~~~~g~id~lvnnAg 86 (235)
T 3l6e_A 62 EDVDVAFAAAVEWGGLPELVLHCAG 86 (235)
T ss_dssp HHHHHHHHHHHHHHCSCSEEEEECC
T ss_pred HHHHHHHHHHHHhcCCCcEEEECCC
Confidence 4556666665554444566766543
|
| >3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=93.39 E-value=0.18 Score=47.66 Aligned_cols=40 Identities=15% Similarity=0.253 Sum_probs=33.7
Q ss_pred cEEEEc-ccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q psy9637 6 DIGLIG-LAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLA 45 (490)
Q Consensus 6 ~IgiIG-lG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~ 45 (490)
++-|.| .|-+|..+|+.|++.|++|++.+|++++.+.+.+
T Consensus 9 ~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~ 49 (250)
T 3nyw_A 9 LAIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHD 49 (250)
T ss_dssp EEEEESTTSHHHHHHHHHHHHHTCEEEEEESCHHHHHHHHH
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 455556 5899999999999999999999999988776654
|
| >3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A | Back alignment and structure |
|---|
Probab=93.38 E-value=0.029 Score=56.84 Aligned_cols=92 Identities=8% Similarity=0.145 Sum_probs=54.1
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHHCCCe---EEEEeCChHHHHHHHHcccCCCCeecc-CCHHHHHhhCCCCcEEEEecCC
Q psy9637 4 KGDIGLIG-LAVMGQNLILNMNDHGFT---VVAYNRTTAKVDSFLANEAKGTNIIGA-HSLEELVKNLKKPRRVMMLVKA 78 (490)
Q Consensus 4 ~~~IgiIG-lG~MG~~lA~~L~~~G~~---V~v~dr~~~~~~~l~~~g~~~~~i~~~-~s~~e~v~~l~~~dvIil~vp~ 78 (490)
++||+||| .|..|.-|.+.|.+++|+ +..+.-....-+.+. .. +..+... .+..+ ++.+|+||+|+|.
T Consensus 2 ~~kVaIvGATG~vG~eLlrlL~~~~~p~~el~~~as~~saG~~~~-~~--~~~~~~~~~~~~~----~~~~Dvvf~a~~~ 74 (366)
T 3pwk_A 2 GYTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSLK-FK--DQDITIEETTETA----FEGVDIALFSAGS 74 (366)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHTCCCCEEEEEEEECTTTTTCEEE-ET--TEEEEEEECCTTT----TTTCSEEEECSCH
T ss_pred CcEEEEECCCChHHHHHHHHHhcCCCCcEEEEEEEccccCCCcce-ec--CCCceEeeCCHHH----hcCCCEEEECCCh
Confidence 36899999 799999999999998774 333322111000000 00 0011111 12222 3348999999987
Q ss_pred CchHHHHHHhhcccCCCCCEEEcCCCCC
Q psy9637 79 GSAVDDFIDKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 79 ~~~v~~vl~~l~~~l~~g~iiId~s~~~ 106 (490)
+ ...+....+ ++.|..|||.|..+
T Consensus 75 ~-~s~~~a~~~---~~~G~~vIDlSa~~ 98 (366)
T 3pwk_A 75 S-TSAKYAPYA---VKAGVVVVDNTSYF 98 (366)
T ss_dssp H-HHHHHHHHH---HHTTCEEEECSSTT
T ss_pred H-hHHHHHHHH---HHCCCEEEEcCCcc
Confidence 5 445554444 34688999999854
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=93.34 E-value=0.39 Score=48.18 Aligned_cols=44 Identities=16% Similarity=0.256 Sum_probs=38.1
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHccc
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGF-TVVAYNRTTAKVDSFLANEA 48 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~g~ 48 (490)
.+|.|+|.|.+|...+..+...|. +|++.++++++.+.+.+.|+
T Consensus 193 ~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa 237 (374)
T 2jhf_A 193 STCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGA 237 (374)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTC
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCC
Confidence 479999999999999888888998 89999999998887776554
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=93.33 E-value=0.24 Score=47.93 Aligned_cols=40 Identities=20% Similarity=0.244 Sum_probs=34.5
Q ss_pred cEEEE--cccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q psy9637 6 DIGLI--GLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLA 45 (490)
Q Consensus 6 ~IgiI--GlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~ 45 (490)
|+.+| |.+-+|..+|+.|++.|.+|++.+|+++++++..+
T Consensus 30 KvalVTGas~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~ 71 (273)
T 4fgs_A 30 KIAVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLDAAIA 71 (273)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 67777 45779999999999999999999999998877654
|
| >2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A* | Back alignment and structure |
|---|
Probab=93.31 E-value=0.061 Score=54.11 Aligned_cols=36 Identities=14% Similarity=0.295 Sum_probs=32.5
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChHH
Q psy9637 4 KGDIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTAK 39 (490)
Q Consensus 4 ~~~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~~ 39 (490)
||+|.|.|. |.+|..++..|++.||+|++.+|++++
T Consensus 29 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~ 65 (379)
T 2c5a_A 29 NLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNE 65 (379)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCS
T ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEECCCcc
Confidence 578999987 999999999999999999999998653
|
| >3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=93.29 E-value=0.29 Score=47.25 Aligned_cols=82 Identities=18% Similarity=0.216 Sum_probs=52.4
Q ss_pred cEEEEc-ccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEe--cCCCchH
Q psy9637 6 DIGLIG-LAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMML--VKAGSAV 82 (490)
Q Consensus 6 ~IgiIG-lG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~--vp~~~~v 82 (490)
.+-|.| .|-+|..+|+.|++.|++|++.+|++++.+++.+.-.. . ..++.++. +.+...+
T Consensus 30 ~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~---------------~--~~~~~~~~~Dv~d~~~v 92 (283)
T 3v8b_A 30 VALITGAGSGIGRATALALAADGVTVGALGRTRTEVEEVADEIVG---------------A--GGQAIALEADVSDELQM 92 (283)
T ss_dssp EEEEESCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHTT---------------T--TCCEEEEECCTTCHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh---------------c--CCcEEEEEccCCCHHHH
Confidence 345555 58899999999999999999999999887776543110 0 02333332 3333455
Q ss_pred HHHHHhhcccCCCCCEEEcCCC
Q psy9637 83 DDFIDKLVPLLEKGDIIIDGGN 104 (490)
Q Consensus 83 ~~vl~~l~~~l~~g~iiId~s~ 104 (490)
+.+++.+.....+=|++|+...
T Consensus 93 ~~~~~~~~~~~g~iD~lVnnAg 114 (283)
T 3v8b_A 93 RNAVRDLVLKFGHLDIVVANAG 114 (283)
T ss_dssp HHHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHHhCCCCEEEECCC
Confidence 6666666554444567776543
|
| >2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* | Back alignment and structure |
|---|
Probab=93.29 E-value=0.17 Score=50.59 Aligned_cols=94 Identities=17% Similarity=0.172 Sum_probs=60.1
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHH-HcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFL-ANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~-~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
.+|.|+|.|.+|...+..+...|.+|++.++++++.+.+. +.|+. .+.-..+.+.+.+.....|+||-++.....++
T Consensus 182 ~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~~~~~~~~~~~~~lGa~--~vi~~~~~~~~~~~~~g~D~vid~~g~~~~~~ 259 (357)
T 2cf5_A 182 LRGGILGLGGVGHMGVKIAKAMGHHVTVISSSNKKREEALQDLGAD--DYVIGSDQAKMSELADSLDYVIDTVPVHHALE 259 (357)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCEEEEEESSTTHHHHHHTTSCCS--CEEETTCHHHHHHSTTTEEEEEECCCSCCCSH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHcCCc--eeeccccHHHHHHhcCCCCEEEECCCChHHHH
Confidence 4799999999999988888888999999999999888776 54532 22222333222222224688888887543444
Q ss_pred HHHHhhcccCCCCCEEEcCCC
Q psy9637 84 DFIDKLVPLLEKGDIIIDGGN 104 (490)
Q Consensus 84 ~vl~~l~~~l~~g~iiId~s~ 104 (490)
..++ .+.++-.++..+.
T Consensus 260 ~~~~----~l~~~G~iv~~G~ 276 (357)
T 2cf5_A 260 PYLS----LLKLDGKLILMGV 276 (357)
T ss_dssp HHHT----TEEEEEEEEECSC
T ss_pred HHHH----HhccCCEEEEeCC
Confidence 4433 3334445555543
|
| >3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A* | Back alignment and structure |
|---|
Probab=93.26 E-value=0.36 Score=46.33 Aligned_cols=82 Identities=15% Similarity=0.123 Sum_probs=52.4
Q ss_pred CcEEEEcc-cH--HHHHHHHHHHHCCCeEEEEeCCh--HHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCC
Q psy9637 5 GDIGLIGL-AV--MGQNLILNMNDHGFTVVAYNRTT--AKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAG 79 (490)
Q Consensus 5 ~~IgiIGl-G~--MG~~lA~~L~~~G~~V~v~dr~~--~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~ 79 (490)
+++-|.|. |. +|..+|+.|++.|++|++.+|+. +..+.+.+... ...++-.=+.+.
T Consensus 27 k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~l~~~~~-------------------~~~~~~~Dl~~~ 87 (280)
T 3nrc_A 27 KKILITGLLSNKSIAYGIAKAMHREGAELAFTYVGQFKDRVEKLCAEFN-------------------PAAVLPCDVISD 87 (280)
T ss_dssp CEEEECCCCSTTCHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHGGGC-------------------CSEEEECCTTCH
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHcCCEEEEeeCchHHHHHHHHHHhcC-------------------CceEEEeecCCH
Confidence 35666674 55 99999999999999999999987 44444433211 122232233444
Q ss_pred chHHHHHHhhcccCCCCCEEEcCCCC
Q psy9637 80 SAVDDFIDKLVPLLEKGDIIIDGGNS 105 (490)
Q Consensus 80 ~~v~~vl~~l~~~l~~g~iiId~s~~ 105 (490)
..++++++.+.....+=|++|.+...
T Consensus 88 ~~v~~~~~~~~~~~g~id~li~nAg~ 113 (280)
T 3nrc_A 88 QEIKDLFVELGKVWDGLDAIVHSIAF 113 (280)
T ss_dssp HHHHHHHHHHHHHCSSCCEEEECCCC
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCcc
Confidence 55667777666555555777776543
|
| >3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* | Back alignment and structure |
|---|
Probab=93.25 E-value=0.68 Score=43.91 Aligned_cols=84 Identities=13% Similarity=0.125 Sum_probs=52.6
Q ss_pred cEEEEc-ccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEe--cCCCchH
Q psy9637 6 DIGLIG-LAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMML--VKAGSAV 82 (490)
Q Consensus 6 ~IgiIG-lG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~--vp~~~~v 82 (490)
.+-|.| .|-+|..+|+.|++.|++|++.+|++++.+.+.+.- .......++.++. +.+...+
T Consensus 10 ~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l---------------~~~~~~~~~~~~~~Dv~~~~~v 74 (265)
T 3lf2_A 10 VAVVTGGSSGIGLATVELLLEAGAAVAFCARDGERLRAAESAL---------------RQRFPGARLFASVCDVLDALQV 74 (265)
T ss_dssp EEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---------------HHHSTTCCEEEEECCTTCHHHH
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH---------------HHhcCCceEEEEeCCCCCHHHH
Confidence 455555 588999999999999999999999988877654321 0100012233332 3333456
Q ss_pred HHHHHhhcccCCCCCEEEcCCC
Q psy9637 83 DDFIDKLVPLLEKGDIIIDGGN 104 (490)
Q Consensus 83 ~~vl~~l~~~l~~g~iiId~s~ 104 (490)
+.+++.+.....+=|++|+...
T Consensus 75 ~~~~~~~~~~~g~id~lvnnAg 96 (265)
T 3lf2_A 75 RAFAEACERTLGCASILVNNAG 96 (265)
T ss_dssp HHHHHHHHHHHCSCSEEEECCC
T ss_pred HHHHHHHHHHcCCCCEEEECCC
Confidence 6666666554445567776643
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=93.24 E-value=0.37 Score=48.29 Aligned_cols=95 Identities=11% Similarity=0.076 Sum_probs=60.3
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHcccCCCCeecc---CCHHHHHhhC--CCCcEEEEecCC
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGF-TVVAYNRTTAKVDSFLANEAKGTNIIGA---HSLEELVKNL--KKPRRVMMLVKA 78 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~g~~~~~i~~~---~s~~e~v~~l--~~~dvIil~vp~ 78 (490)
.+|.|+|.|.+|...+..+...|. +|++.++++++.+.+.+.|+. .-+... .++.+.+.++ ...|+||-++..
T Consensus 193 ~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~-~vi~~~~~~~~~~~~i~~~t~gg~Dvvid~~g~ 271 (373)
T 1p0f_A 193 STCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGAT-ECLNPKDYDKPIYEVICEKTNGGVDYAVECAGR 271 (373)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCS-EEECGGGCSSCHHHHHHHHTTSCBSEEEECSCC
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCc-EEEecccccchHHHHHHHHhCCCCCEEEECCCC
Confidence 479999999999988887777898 799999999998887776652 001111 2333333322 136888887765
Q ss_pred CchHHHHHHhhcccCCCC-CEEEcCCC
Q psy9637 79 GSAVDDFIDKLVPLLEKG-DIIIDGGN 104 (490)
Q Consensus 79 ~~~v~~vl~~l~~~l~~g-~iiId~s~ 104 (490)
... +...+..+.++ -.++..+.
T Consensus 272 ~~~----~~~~~~~l~~~~G~iv~~G~ 294 (373)
T 1p0f_A 272 IET----MMNALQSTYCGSGVTVVLGL 294 (373)
T ss_dssp HHH----HHHHHHTBCTTTCEEEECCC
T ss_pred HHH----HHHHHHHHhcCCCEEEEEcc
Confidence 322 33334455555 55555553
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=93.23 E-value=0.46 Score=47.61 Aligned_cols=95 Identities=12% Similarity=0.151 Sum_probs=59.6
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHcccCCCCeecc---CCHHHHHhhC--CCCcEEEEecCC
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGF-TVVAYNRTTAKVDSFLANEAKGTNIIGA---HSLEELVKNL--KKPRRVMMLVKA 78 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~g~~~~~i~~~---~s~~e~v~~l--~~~dvIil~vp~ 78 (490)
.+|.|+|.|.+|...+..+...|. +|++.++++++.+.+.+.|+. .-+... .++.+.+..+ ...|+||-++..
T Consensus 194 ~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~-~vi~~~~~~~~~~~~~~~~~~~g~D~vid~~g~ 272 (374)
T 1cdo_A 194 STCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGAT-DFVNPNDHSEPISQVLSKMTNGGVDFSLECVGN 272 (374)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCC-EEECGGGCSSCHHHHHHHHHTSCBSEEEECSCC
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCc-eEEeccccchhHHHHHHHHhCCCCCEEEECCCC
Confidence 479999999999999888888998 899999999998887766542 001111 1233333221 136788877765
Q ss_pred CchHHHHHHhhcccCCCC-CEEEcCCC
Q psy9637 79 GSAVDDFIDKLVPLLEKG-DIIIDGGN 104 (490)
Q Consensus 79 ~~~v~~vl~~l~~~l~~g-~iiId~s~ 104 (490)
... +...+..+.++ -.++..+.
T Consensus 273 ~~~----~~~~~~~l~~~~G~iv~~G~ 295 (374)
T 1cdo_A 273 VGV----MRNALESCLKGWGVSVLVGW 295 (374)
T ss_dssp HHH----HHHHHHTBCTTTCEEEECSC
T ss_pred HHH----HHHHHHHhhcCCcEEEEEcC
Confidence 322 33333445555 45555543
|
| >2bma_A Glutamate dehydrogenase (NADP+); malaria, drug design, analysis, oligomer organization, oxidoreductase; 2.7A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=93.23 E-value=0.39 Score=49.84 Aligned_cols=115 Identities=10% Similarity=0.036 Sum_probs=73.3
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEE-EEe----------CChHHHHHHHHcccCC-CCeecc---------CCHHHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVV-AYN----------RTTAKVDSFLANEAKG-TNIIGA---------HSLEELV 63 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~-v~d----------r~~~~~~~l~~~g~~~-~~i~~~---------~s~~e~v 63 (490)
++|.|-|.|++|...|+.|.+.|..|+ +.| .+++.++.+.+..... .++..+ .+..++.
T Consensus 253 ~~vaVqG~GnVG~~~a~~L~~~GakvVavsD~~G~i~dp~Gid~edl~~l~~~k~~~~g~v~~~~~~~~~a~~v~~~~~~ 332 (470)
T 2bma_A 253 QTAVVSGSGNVALYCVQKLLHLNVKVLTLSDSNGYVYEPNGFTHENLEFLIDLKEEKKGRIKEYLNHSSTAKYFPNEKPW 332 (470)
T ss_dssp CEEEEECSSHHHHHHHHHHHHTTCEECEEEETTEEEECSSCCCHHHHHHHHHHHTTTTCCGGGGGGTCSSCEECSSCCTT
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEEeCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHHhhcCCcEEecCcCee
Confidence 579999999999999999999999988 666 3666666665421110 111111 0112222
Q ss_pred hhCCCCcEEEEecCCCchHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccccc
Q psy9637 64 KNLKKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYV 125 (490)
Q Consensus 64 ~~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~l 125 (490)
. + ++|+.+-|-.......+-+..|.. +.=++|+.+.|.. .+.+..+.+.++|+.|+
T Consensus 333 ~-~-~~DI~iPcA~~~~I~~~na~~l~~--~~ak~V~EgAN~p--~T~eA~~~L~~rGIl~~ 388 (470)
T 2bma_A 333 G-V-PCTLAFPCATQNDVDLDQAKLLQK--NGCILVGEGANMP--STVDAINLFKSNNIIYC 388 (470)
T ss_dssp S-S-CCSEEEECSSTTCBCSHHHHHHHH--TTCCEEECCSSSC--BCHHHHHHHHHTTCEEE
T ss_pred e-c-CccEEEeccccCcCCHHHHHHHHh--cCcEEEEeCCCCC--CCHHHHHHHHHCCcEEE
Confidence 1 1 489988777555444455555543 2346888888864 34445688899998775
|
| >2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A* | Back alignment and structure |
|---|
Probab=93.21 E-value=0.056 Score=54.48 Aligned_cols=37 Identities=22% Similarity=0.357 Sum_probs=32.2
Q ss_pred CCCCCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCCh
Q psy9637 1 MAAKGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTT 37 (490)
Q Consensus 1 M~~~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~ 37 (490)
|+...+|.|||.|..|...|..|+++|++|+++++.+
T Consensus 1 M~~~~DVvIIGaG~~Gl~~A~~La~~G~~V~vlE~~~ 37 (397)
T 2oln_A 1 MTESYDVVVVGGGPVGLATAWQVAERGHRVLVLERHT 37 (397)
T ss_dssp --CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 5544689999999999999999999999999999874
|
| >4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A | Back alignment and structure |
|---|
Probab=93.15 E-value=0.18 Score=54.03 Aligned_cols=122 Identities=15% Similarity=0.082 Sum_probs=66.6
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHccc-CCCCe--eccCCHHHHHhhCCCCcEEEEecCCC-
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGF-TVVAYNRTTAKVDSFLANEA-KGTNI--IGAHSLEELVKNLKKPRRVMMLVKAG- 79 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~g~-~~~~i--~~~~s~~e~v~~l~~~dvIil~vp~~- 79 (490)
.+|.|||+|..|..+|.+|+..|. +++++|.+.-....+..... ....+ .-+....+.+..+ .|++-+...+..
T Consensus 327 arVLIVGaGGLGs~vA~~La~aGVG~ItLvD~D~Ve~SNL~RQ~L~~~~dIG~~KAeaaa~~L~~i-NP~V~v~~~~~~I 405 (615)
T 4gsl_A 327 TKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRI-FPLMDATGVKLSI 405 (615)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCBCCTTGGGTSTTCCGGGTTSBHHHHHHHHHHHH-CTTCEEEEECCCC
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCCCcccCcccccCCChhhcChHHHHHHHHHHHhh-CCCcEEEEeeccc
Confidence 589999999999999999999997 78899986422111111100 00000 0122233333322 255555555421
Q ss_pred ----ch----HHHHH--HhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccC
Q psy9637 80 ----SA----VDDFI--DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCG 128 (490)
Q Consensus 80 ----~~----v~~vl--~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~ 128 (490)
.. .+..+ +.+...+..-|+|||++-.. ..-..+.+.+...++.++++.
T Consensus 406 pm~gh~v~~e~~~~l~~~~l~~ll~~~DlVvd~tDn~-~tR~~ln~~c~~~~~PlI~aa 463 (615)
T 4gsl_A 406 PMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLVDSR-ESRWLPSLLSNIENKTVINAA 463 (615)
T ss_dssp CCTTCCCSCHHHHHHHHHHHHHHHHHCSEEEECCSSG-GGTHHHHHHHHHTTCEEEEEE
T ss_pred cccCccccchhhhcCCHHHHHHHhhcCCEEEecCCCH-HHHHHHHHHHHHcCCeEEEEE
Confidence 00 00111 22233344568999997643 333344467777888887763
|
| >4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.12 E-value=0.08 Score=51.19 Aligned_cols=34 Identities=21% Similarity=0.230 Sum_probs=31.5
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChH
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTA 38 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~ 38 (490)
|||-|.|. |.+|+.++..|.++||+|++..|++.
T Consensus 1 MkILVTGatGfIG~~L~~~L~~~G~~V~~l~R~~~ 35 (298)
T 4b4o_A 1 MRVLVGGGTGFIGTALTQLLNARGHEVTLVSRKPG 35 (298)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence 58999996 99999999999999999999999864
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=93.07 E-value=0.33 Score=48.80 Aligned_cols=95 Identities=12% Similarity=0.169 Sum_probs=59.0
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHcccCCCCeec---cCCHHHHHhhCC--CCcEEEEecCC
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGF-TVVAYNRTTAKVDSFLANEAKGTNIIG---AHSLEELVKNLK--KPRRVMMLVKA 78 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~g~~~~~i~~---~~s~~e~v~~l~--~~dvIil~vp~ 78 (490)
.+|.|+|.|.+|...+..+...|. +|++.++++++.+.+.+.|+. .-+.. ..++.+.+..+. ..|+||-++..
T Consensus 195 ~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~lGa~-~vi~~~~~~~~~~~~i~~~~~gg~D~vid~~g~ 273 (378)
T 3uko_A 195 SNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKFGVN-EFVNPKDHDKPIQEVIVDLTDGGVDYSFECIGN 273 (378)
T ss_dssp CCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTTTCC-EEECGGGCSSCHHHHHHHHTTSCBSEEEECSCC
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCc-EEEccccCchhHHHHHHHhcCCCCCEEEECCCC
Confidence 479999999999988888888898 899999999999877766542 00111 123333333221 36777777765
Q ss_pred CchHHHHHHhhcccCCCC-CEEEcCCC
Q psy9637 79 GSAVDDFIDKLVPLLEKG-DIIIDGGN 104 (490)
Q Consensus 79 ~~~v~~vl~~l~~~l~~g-~iiId~s~ 104 (490)
...+ +..+..+.++ -.++..+.
T Consensus 274 ~~~~----~~~~~~l~~g~G~iv~~G~ 296 (378)
T 3uko_A 274 VSVM----RAALECCHKGWGTSVIVGV 296 (378)
T ss_dssp HHHH----HHHHHTBCTTTCEEEECSC
T ss_pred HHHH----HHHHHHhhccCCEEEEEcc
Confidence 3222 3333344553 45555443
|
| >1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A* | Back alignment and structure |
|---|
Probab=93.06 E-value=0.29 Score=48.27 Aligned_cols=34 Identities=18% Similarity=0.219 Sum_probs=31.3
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCCh
Q psy9637 4 KGDIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTT 37 (490)
Q Consensus 4 ~~~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~ 37 (490)
+|+|.|.|. |.+|..++..|++.|++|++.+|++
T Consensus 27 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~ 61 (352)
T 1sb8_A 27 PKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFA 61 (352)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred CCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 468999987 9999999999999999999999975
|
| >3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=93.04 E-value=0.34 Score=45.84 Aligned_cols=82 Identities=12% Similarity=0.153 Sum_probs=52.2
Q ss_pred cEEEEc-ccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEe--cCCCchH
Q psy9637 6 DIGLIG-LAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMML--VKAGSAV 82 (490)
Q Consensus 6 ~IgiIG-lG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~--vp~~~~v 82 (490)
++-|.| .|-+|..+|+.|+++|++|++.+|++++.+.+.+.-. .. ..++.++. +.+...+
T Consensus 14 ~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~---------------~~--~~~~~~~~~Dv~d~~~v 76 (256)
T 3gaf_A 14 VAIVTGAAAGIGRAIAGTFAKAGASVVVTDLKSEGAEAVAAAIR---------------QA--GGKAIGLECNVTDEQHR 76 (256)
T ss_dssp EEEECSCSSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHH---------------HT--TCCEEEEECCTTCHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH---------------hc--CCcEEEEECCCCCHHHH
Confidence 344555 5889999999999999999999999887776553210 00 02333332 3333456
Q ss_pred HHHHHhhcccCCCCCEEEcCCC
Q psy9637 83 DDFIDKLVPLLEKGDIIIDGGN 104 (490)
Q Consensus 83 ~~vl~~l~~~l~~g~iiId~s~ 104 (490)
+++++.+.....+=|++|+...
T Consensus 77 ~~~~~~~~~~~g~id~lv~nAg 98 (256)
T 3gaf_A 77 EAVIKAALDQFGKITVLVNNAG 98 (256)
T ss_dssp HHHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHHcCCCCEEEECCC
Confidence 6666666554445567776543
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.03 E-value=0.23 Score=49.32 Aligned_cols=95 Identities=12% Similarity=0.088 Sum_probs=58.9
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeec--cCCHHHHHhhCC--CCcEEEEecCCC
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIG--AHSLEELVKNLK--KPRRVMMLVKAG 79 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~--~~s~~e~v~~l~--~~dvIil~vp~~ 79 (490)
.+|.|+|. |.+|..++..+...|.+|++.++++++.+.+.+.+.. .-+.. ..+..+.+..+. ..|+||-++...
T Consensus 171 ~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~~~~g~~-~~~d~~~~~~~~~~~~~~~~~~~D~vi~~~g~~ 249 (347)
T 2hcy_A 171 HWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFRSIGGE-VFIDFTKEKDIVGAVLKATDGGAHGVINVSVSE 249 (347)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHHHHTTCC-EEEETTTCSCHHHHHHHHHTSCEEEEEECSSCH
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHHcCCc-eEEecCccHhHHHHHHHHhCCCCCEEEECCCcH
Confidence 47999999 8999999999999999999999999888766654431 00111 123333333211 357777766542
Q ss_pred chHHHHHHhhcccCCCCCEEEcCCC
Q psy9637 80 SAVDDFIDKLVPLLEKGDIIIDGGN 104 (490)
Q Consensus 80 ~~v~~vl~~l~~~l~~g~iiId~s~ 104 (490)
..++...+.+.++-.++..+.
T Consensus 250 ----~~~~~~~~~l~~~G~iv~~g~ 270 (347)
T 2hcy_A 250 ----AAIEASTRYVRANGTTVLVGM 270 (347)
T ss_dssp ----HHHHHHTTSEEEEEEEEECCC
T ss_pred ----HHHHHHHHHHhcCCEEEEEeC
Confidence 223444444555545555543
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=93.02 E-value=0.39 Score=45.61 Aligned_cols=81 Identities=15% Similarity=0.278 Sum_probs=53.7
Q ss_pred cEEEEc-ccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEe--cCCCchH
Q psy9637 6 DIGLIG-LAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMML--VKAGSAV 82 (490)
Q Consensus 6 ~IgiIG-lG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~--vp~~~~v 82 (490)
++-|.| .|-+|..+|+.|+++|++|++.+|++++.+.+.+.-. +. ..++.++. +.+...+
T Consensus 13 ~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~---------------~~--~~~~~~~~~Dv~~~~~v 75 (264)
T 3ucx_A 13 VVVISGVGPALGTTLARRCAEQGADLVLAARTVERLEDVAKQVT---------------DT--GRRALSVGTDITDDAQV 75 (264)
T ss_dssp EEEEESCCTTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH---------------HT--TCCEEEEECCTTCHHHH
T ss_pred EEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHH---------------hc--CCcEEEEEcCCCCHHHH
Confidence 455666 4789999999999999999999999988776654210 10 02333332 3344456
Q ss_pred HHHHHhhcccCCCCCEEEcCC
Q psy9637 83 DDFIDKLVPLLEKGDIIIDGG 103 (490)
Q Consensus 83 ~~vl~~l~~~l~~g~iiId~s 103 (490)
+.+++.+.....+=|++|+..
T Consensus 76 ~~~~~~~~~~~g~id~lv~nA 96 (264)
T 3ucx_A 76 AHLVDETMKAYGRVDVVINNA 96 (264)
T ss_dssp HHHHHHHHHHTSCCSEEEECC
T ss_pred HHHHHHHHHHcCCCcEEEECC
Confidence 666666665555557777765
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=93.01 E-value=0.43 Score=46.36 Aligned_cols=40 Identities=10% Similarity=0.140 Sum_probs=34.1
Q ss_pred cEEEEc-ccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q psy9637 6 DIGLIG-LAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLA 45 (490)
Q Consensus 6 ~IgiIG-lG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~ 45 (490)
+|-|.| .|-+|..+|+.|++.|++|++.+|++++.+.+.+
T Consensus 33 ~vlVTGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~ 73 (301)
T 3tjr_A 33 AAVVTGGASGIGLATATEFARRGARLVLSDVDQPALEQAVN 73 (301)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 466666 4889999999999999999999999988776553
|
| >4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=93.01 E-value=0.35 Score=46.45 Aligned_cols=40 Identities=13% Similarity=0.008 Sum_probs=33.5
Q ss_pred cEEEEc-ccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q psy9637 6 DIGLIG-LAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLA 45 (490)
Q Consensus 6 ~IgiIG-lG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~ 45 (490)
++-|.| .|-+|..+|+.|++.|++|++.+|++++.+.+.+
T Consensus 29 ~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~ 69 (277)
T 4dqx_A 29 VCIVTGGGSGIGRATAELFAKNGAYVVVADVNEDAAVRVAN 69 (277)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 355555 5899999999999999999999999888776654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 490 | ||||
| d2pgda1 | 297 | a.100.1.1 (A:177-473) 6-phosphogluconate dehydroge | 2e-75 | |
| d2pgda1 | 297 | a.100.1.1 (A:177-473) 6-phosphogluconate dehydroge | 8e-60 | |
| d1pgja1 | 300 | a.100.1.1 (A:179-478) 6-phosphogluconate dehydroge | 2e-56 | |
| d1pgja1 | 300 | a.100.1.1 (A:179-478) 6-phosphogluconate dehydroge | 3e-56 | |
| d2pgda2 | 176 | c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase | 1e-29 | |
| d1pgja2 | 178 | c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase | 1e-25 | |
| d1vpda2 | 161 | c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase | 3e-21 | |
| d3cuma2 | 162 | c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase | 4e-21 | |
| d2cvza2 | 156 | c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase | 1e-15 | |
| d1i36a2 | 152 | c.2.1.6 (A:1-152) Conserved hypothetical protein M | 6e-10 | |
| d2f1ka2 | 165 | c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {S | 2e-04 | |
| d2i76a2 | 153 | c.2.1.6 (A:2-154) Hypothetical protein TM1727 {The | 0.001 | |
| d1bg6a2 | 184 | c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvalin | 0.003 |
| >d2pgda1 a.100.1.1 (A:177-473) 6-phosphogluconate dehydrogenase (6PGD) {Sheep (Ovis orientalis aries) [TaxId: 9940]} Length = 297 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: 6-phosphogluconate dehydrogenase (6PGD) species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Score = 237 bits (605), Expect = 2e-75
Identities = 127/214 (59%), Positives = 143/214 (66%), Gaps = 4/214 (1%)
Query: 126 GCGVSGGEDGARYG---PSLMPGGNPAAWPALKPIFQKLNPSFETSAPTPKPQRDKKEFL 182
G G YG + +LK + + + P DKK FL
Sbjct: 85 GTGKWTAISALEYGVPVTLIGEAVFARCLSSLKDERIQASKKLKGPQNIPFEG-DKKSFL 143
Query: 183 ENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGGCIIRSVFLGNIKAAF 242
E+IR+ALYASKI+SYAQGFML+RQAA GW LNYGGIALMWRGGCIIRSVFLG IK AF
Sbjct: 144 EDIRKALYASKIISYAQGFMLLRQAATEFGWTLNYGGIALMWRGGCIIRSVFLGKIKDAF 203
Query: 243 DKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSALLGIPTPAFATALAFYDGYRSKRLPA 302
D+NP L NLLLD FFK A+ Q SWR +S GIP P F TAL+FYDGYR LPA
Sbjct: 204 DRNPGLQNLLLDDFFKSAVENCQDSWRRAISTGVQAGIPMPCFTTALSFYDGYRHAMLPA 263
Query: 303 NLLQAQRDYFGAHTYELLAAPGKFVHTNWTGHGG 336
NL+QAQRDYFGAHTYELLA PG+F+HTNWTGHGG
Sbjct: 264 NLIQAQRDYFGAHTYELLAKPGQFIHTNWTGHGG 297
|
| >d2pgda1 a.100.1.1 (A:177-473) 6-phosphogluconate dehydrogenase (6PGD) {Sheep (Ovis orientalis aries) [TaxId: 9940]} Length = 297 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: 6-phosphogluconate dehydrogenase (6PGD) species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Score = 196 bits (500), Expect = 8e-60
Identities = 100/133 (75%), Positives = 112/133 (84%)
Query: 356 GAGHFVKMVHNGIEYGDMQLICEAYHLMTGALGMSHDEMSAVFEDWNKGELDSFLIEITK 415
GAGHFVKMVHNGIEYGDMQLICEAYHLM LG+ H EM+ FE+WNK ELDSFLIEIT
Sbjct: 1 GAGHFVKMVHNGIEYGDMQLICEAYHLMKDVLGLGHKEMAKAFEEWNKTELDSFLIEITA 60
Query: 416 DILKFKDTDGAPLVEKIKDYAGQKGTGKWTAISALDYGVPVTLIGESVFSRCLSSLFDER 475
ILKF+D DG L+ KI+D AGQKGTGKWTAISAL+YGVPVTLIGE+VF+RCLSSL DER
Sbjct: 61 SILKFQDADGKHLLPKIRDSAGQKGTGKWTAISALEYGVPVTLIGEAVFARCLSSLKDER 120
Query: 476 QKASQVLQGPNPT 488
+AS+ L+GP
Sbjct: 121 IQASKKLKGPQNI 133
|
| >d1pgja1 a.100.1.1 (A:179-478) 6-phosphogluconate dehydrogenase (6PGD) {Trypanosoma brucei [TaxId: 5691]} Length = 300 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: 6-phosphogluconate dehydrogenase (6PGD) species: Trypanosoma brucei [TaxId: 5691]
Score = 187 bits (477), Expect = 2e-56
Identities = 50/134 (37%), Positives = 77/134 (57%), Gaps = 2/134 (1%)
Query: 356 GAGHFVKMVHNGIEYGDMQLICEAYHLMTGALGMSHDEMSAVFEDW-NKGELDSFLIEIT 414
GAG VKM HN EY +Q+ E + ++ +G+++DE++AV EDW +K L S++++I+
Sbjct: 1 GAGSCVKMYHNSGEYAILQIWGEVFDILRA-MGLNNDEVAAVLEDWKSKNFLKSYMLDIS 59
Query: 415 KDILKFKDTDGAPLVEKIKDYAGQKGTGKWTAISALDYGVPVTLIGESVFSRCLSSLFDE 474
+ KD DG+ L E + D G KGTG W+A AL+ GVP + +V SR + E
Sbjct: 60 IAAARAKDKDGSYLTEHVMDRIGSKGTGLWSAQEALEIGVPAPSLNMAVVSRQFTMYKTE 119
Query: 475 RQKASQVLQGPNPT 488
RQ + G +
Sbjct: 120 RQANASNAPGITQS 133
|
| >d1pgja1 a.100.1.1 (A:179-478) 6-phosphogluconate dehydrogenase (6PGD) {Trypanosoma brucei [TaxId: 5691]} Length = 300 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: 6-phosphogluconate dehydrogenase (6PGD) species: Trypanosoma brucei [TaxId: 5691]
Score = 187 bits (475), Expect = 3e-56
Identities = 42/175 (24%), Positives = 75/175 (42%), Gaps = 3/175 (1%)
Query: 159 QKLNPSFETSAPTPKPQRDKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYG 218
++ T K + ++ + ++ + I YAQ F +R+ ++H + LN
Sbjct: 125 SNAPGITQSPGYTLKNKSPSGPEIKQLYDSVCIAIISCYAQMFQCLREMDKVHNFGLNLP 184
Query: 219 GIALMWRGGCIIRSVFLGNIKAAFDKNPALSNLLLDPFFKDAIHATQSSWRAVVSQSALL 278
+R GCI++ L + AF+KNP +SNL+ F + Q+ V ++ L
Sbjct: 185 ATIATFRAGCILQGYLLKPMTEAFEKNPNISNLMCA-FQTEIRAGLQNYRDMVALITSKL 243
Query: 279 GIPTPAFATALAFYDGYRSKRLP-ANLLQAQRDYFGAHTYELLAAPGKFVHTNWT 332
+ P + +L + + L L+ QRD FG H YE + G+ W
Sbjct: 244 EVSIPVLSASLNYVTAMFTPTLKYGQLVSLQRDVFGRHGYERVDKDGRE-SFQWP 297
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Score = 112 bits (280), Expect = 1e-29
Identities = 121/168 (72%), Positives = 140/168 (83%)
Query: 3 AKGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEEL 62
A+ DI LIGLAVMGQNLILNMNDHGF V A+NRT +KVD FLANEAKGT ++GAHSLEE+
Sbjct: 1 AQADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEM 60
Query: 63 VKNLKKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGL 122
V LKKPRR+++LVKAG AVD+FI+KLVPLL+ GDIIIDGGNSEY+DT RR + L+ KG+
Sbjct: 61 VSKLKKPRRIILLVKAGQAVDNFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGI 120
Query: 123 LYVGCGVSGGEDGARYGPSLMPGGNPAAWPALKPIFQKLNPSFETSAP 170
L+VG GVSGGEDGARYGPSLMPGGN AWP +K IFQ + T P
Sbjct: 121 LFVGSGVSGGEDGARYGPSLMPGGNKEAWPHIKAIFQGIAAKVGTGEP 168
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Score = 101 bits (251), Expect = 1e-25
Identities = 68/159 (42%), Positives = 105/159 (66%), Gaps = 3/159 (1%)
Query: 6 DIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKG---TNIIGAHSLEEL 62
D+G++GL VMG NL LN+ + GF V +NRT +K + F+ A N+ ++E
Sbjct: 3 DVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAF 62
Query: 63 VKNLKKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGL 122
+LKKPR+ ++LV+AG+A D I++L + EKGDI++D GN+ ++D RR++ LEA GL
Sbjct: 63 AASLKKPRKALILVQAGAATDSTIEQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGL 122
Query: 123 LYVGCGVSGGEDGARYGPSLMPGGNPAAWPALKPIFQKL 161
++G G+SGGE+GAR GP+ PGG + W ++PI +
Sbjct: 123 RFLGMGISGGEEGARKGPAFFPGGTLSVWEEIRPIVEAA 161
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} Length = 161 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Score = 87.9 bits (217), Expect = 3e-21
Identities = 35/159 (22%), Positives = 72/159 (45%), Gaps = 12/159 (7%)
Query: 7 IGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNL 66
+G IGL +MG+ + N+ G+++V +R + +A A+ + A
Sbjct: 3 VGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAI--------A 54
Query: 67 KKPRRVMMLVKAGSAVDDFI---DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLL 123
++ ++ ++ V + + ++ + G ++ID + + S AL+AKG+
Sbjct: 55 EQCDVIITMLPNSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKAKGVE 114
Query: 124 YVGCGVSGGEDGARYGP-SLMPGGNPAAWPALKPIFQKL 161
+ VSGGE A G S+M GG+ A + + + +
Sbjct: 115 MLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAM 153
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 88.0 bits (217), Expect = 4e-21
Identities = 32/156 (20%), Positives = 60/156 (38%), Gaps = 6/156 (3%)
Query: 7 IGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNL 66
I IGL MG + N+ G+ + ++ + VD A S + V+
Sbjct: 4 IAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGL-----VAAGASAARSARDAVQGA 58
Query: 67 KKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVG 126
++ + + D L+ + G ++++ + A +GL +
Sbjct: 59 DVVISMLPASQHVEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERGLAMLD 118
Query: 127 CGVSGGEDGARYGP-SLMPGGNPAAWPALKPIFQKL 161
VSGG GA G + M GG+ A +P+F+ +
Sbjct: 119 APVSGGTAGAAAGTLTFMVGGDAEALEKARPLFEAM 154
|
| >d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 156 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Score = 71.9 bits (175), Expect = 1e-15
Identities = 32/153 (20%), Positives = 55/153 (35%), Gaps = 11/153 (7%)
Query: 7 IGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNL 66
+ IGL MG + ++ T+V +NRT K + + ++
Sbjct: 3 VAFIGLGAMGYPMAGHLARRFPTLV-WNRTFEKALRHQEEFGSEAVPLERVAEARVIFTC 61
Query: 67 KKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVG 126
R + V +D + E + + R ++ L KG+ Y+
Sbjct: 62 LPTTREVYEVAEALYPYLREG---------TYWVDATSGEPEASRRLAERLREKGVTYLD 112
Query: 127 CGVSGGEDGARYGP-SLMPGGNPAAWPALKPIF 158
VSGG GA G ++M GG A ++P
Sbjct: 113 APVSGGTSGAEAGTLTVMLGGPEEAVERVRPFL 145
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 152 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Score = 55.6 bits (133), Expect = 6e-10
Identities = 29/157 (18%), Positives = 46/157 (29%), Gaps = 19/157 (12%)
Query: 7 IGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNL 66
+G IG + Q L + G VV + + + + EE V +
Sbjct: 3 VGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPST-----IERARTVGVTETSEEDVYS- 56
Query: 67 KKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVG 126
V+ V G A+ I +D N + S +E G +V
Sbjct: 57 --CPVVISAVTPGVALGAARR---AGRHVRGIYVDINNISPETVRMASSLIEKGG--FVD 109
Query: 127 CGVSGGEDGARYGPSLMPGGNPAAWPALKPIFQKLNP 163
+ G ++ G A F KLN
Sbjct: 110 AAIMGSVRRKGADIRIIASGRDAE------EFMKLNR 140
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} Length = 165 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Score = 40.1 bits (92), Expect = 2e-04
Identities = 21/163 (12%), Positives = 49/163 (30%), Gaps = 15/163 (9%)
Query: 7 IGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNL 66
IG++GL ++G +L ++ G ++ +R + A E + + G + L
Sbjct: 3 IGVVGLGLIGASLAGDLRRRGHYLIGVSRQ--QSTCEKAVERQLVDEAGQD-----LSLL 55
Query: 67 KKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVG 126
+ + + + + + L + G +
Sbjct: 56 QTAKIIFLCTPIQLILPTLEKLIPHLSPTAIVTDVASVKTAIAEPASQLWSGFIGGHPMA 115
Query: 127 CGVSGGEDGARYGP--------SLMPGGNPAAWPALKPIFQKL 161
+ G DGA + +P L+ + + L
Sbjct: 116 GTAAQGIDGAEENLFVNAPYVLTPTEYTDPEQLACLRSVLEPL 158
|
| >d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]} Length = 153 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM1727 species: Thermotoga maritima [TaxId: 2336]
Score = 37.7 bits (86), Expect = 0.001
Identities = 11/156 (7%), Positives = 41/156 (26%), Gaps = 16/156 (10%)
Query: 7 IGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNL 66
+ +G + + + + D +R+ + + ++
Sbjct: 2 LNFVGTGTLTRFFLECLKDRYEIGYILSRSIDRARNLAEVY---------GGKAATLEKH 52
Query: 67 KKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVG 126
+ V+ ++ + + L +++ + ++S
Sbjct: 53 PELNGVVFVIVPDRYIKTVANHLNL---GDAVLVHCSGFLSSEIFKKSGRASIH---PNF 106
Query: 127 CGVSGGEDGARY-GPSLMPGGNPAAWPALKPIFQKL 161
S + G+ P +K I +++
Sbjct: 107 SFSSLEKALEMKDQIVFGLEGDERGLPIVKKIAEEI 142
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Score = 36.4 bits (83), Expect = 0.003
Identities = 14/103 (13%), Positives = 30/103 (29%), Gaps = 12/103 (11%)
Query: 7 IGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNL 66
++GL G + G +V+A++ ++ +G I L
Sbjct: 4 YAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQ---DRGAIIAEGPGLAGTAHPD 60
Query: 67 KKPRRVMMLVKAG---------SAVDDFIDKLVPLLEKGDIII 100
+ + VK + + +G +II
Sbjct: 61 LLTSDIGLAVKDADVILIVVPAIHHASIAANIASYISEGQLII 103
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 490 | |||
| d2pgda1 | 297 | 6-phosphogluconate dehydrogenase (6PGD) {Sheep (Ov | 100.0 | |
| d1pgja1 | 300 | 6-phosphogluconate dehydrogenase (6PGD) {Trypanoso | 100.0 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 99.97 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 99.97 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 99.97 | |
| d2pgda1 | 297 | 6-phosphogluconate dehydrogenase (6PGD) {Sheep (Ov | 99.97 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 99.96 | |
| d1pgja1 | 300 | 6-phosphogluconate dehydrogenase (6PGD) {Trypanoso | 99.95 | |
| d2cvza2 | 156 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 99.95 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 99.86 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 99.84 | |
| d2i76a2 | 153 | Hypothetical protein TM1727 {Thermotoga maritima [ | 99.79 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 99.77 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 99.72 | |
| d3cuma1 | 134 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 99.61 | |
| d1vpda1 | 133 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 99.61 | |
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 99.54 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 99.54 | |
| d2b0ja2 | 242 | 5,10-methenyltetrahydromethanopterin hydrogenase, | 99.52 | |
| d2cvza1 | 132 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 99.51 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 99.46 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 99.42 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 99.41 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 99.33 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 99.33 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 99.21 | |
| d1dlja2 | 196 | UDP-glucose dehydrogenase (UDPGDH) {Streptococcus | 99.16 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 99.11 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 98.87 | |
| d1gdha1 | 191 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 98.82 | |
| d1mx3a1 | 193 | Transcription corepressor CtbP {Human (Homo sapien | 98.81 | |
| d1j4aa1 | 197 | D-lactate dehydrogenase {Lactobacillus helveticus | 98.77 | |
| d1ygya1 | 184 | Phosphoglycerate dehydrogenase {Mycobacterium tube | 98.74 | |
| d2naca1 | 188 | Formate dehydrogenase {Pseudomonas sp., strain 101 | 98.72 | |
| d3cuma1 | 134 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 98.7 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 98.67 | |
| d1dxya1 | 199 | D-2-hydroxyisocaproate dehydrogenase {Lactobacillu | 98.63 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 98.61 | |
| d1sc6a1 | 188 | Phosphoglycerate dehydrogenase {Escherichia coli [ | 98.61 | |
| d1vpda1 | 133 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 98.5 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 98.47 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 98.46 | |
| d1np3a2 | 182 | Class I ketol-acid reductoisomerase (KARI) {Pseudo | 98.44 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 98.41 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 98.38 | |
| d1ydwa1 | 184 | Probable oxidoreductase At4g09670 {Thale cress (Ar | 98.37 | |
| d2cvza1 | 132 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 98.29 | |
| d1tlta1 | 164 | Virulence factor MviM {Escherichia coli [TaxId: 56 | 98.23 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 98.21 | |
| d1zh8a1 | 181 | Hypothetical protein TM0312 {Thermotoga maritima [ | 98.15 | |
| d1c1da1 | 201 | Phenylalanine dehydrogenase {Rhodococcus sp., M4 [ | 98.12 | |
| d1qmga2 | 226 | Class II ketol-acid reductoisomerase (KARI) {Spina | 98.11 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 98.09 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 98.08 | |
| d1xeaa1 | 167 | Putative oxidoreductase VCA1048 {Vibrio cholerae [ | 98.07 | |
| d1vjta1 | 193 | Putative alpha-glucosidase TM0752 {Thermotoga mari | 98.05 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 97.99 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 97.99 | |
| d1h6da1 | 221 | Glucose-fructose oxidoreductase, N-terminal domain | 97.99 | |
| d1mv8a1 | 98 | GDP-mannose 6-dehydrogenase, middle domain {Pseudo | 97.96 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 97.9 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 97.9 | |
| d1f06a1 | 170 | Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb | 97.84 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 97.83 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 97.79 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 97.78 | |
| d1nvmb1 | 157 | Acetaldehyde dehydrogenase (acylating) {Pseudomona | 97.75 | |
| d1dlja1 | 98 | UDP-glucose dehydrogenase (UDPGDH), middle domain | 97.74 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 97.74 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 97.7 | |
| d1obba1 | 171 | Alpha-glucosidase AglA {Thermotoga maritima [TaxId | 97.64 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 97.64 | |
| d1v8ba1 | 163 | S-adenosylhomocystein hydrolase {Plasmodium falcip | 97.63 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 97.62 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 97.62 | |
| d1j5pa4 | 132 | Hypothetical protein TM1643 {Thermotoga maritima [ | 97.62 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 97.61 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 97.6 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 97.54 | |
| d1leha1 | 230 | Leucine dehydrogenase {Bacillus sphaericus [TaxId: | 97.47 | |
| d1hyea1 | 145 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 97.46 | |
| d2nvwa1 | 237 | Galactose/lactose metabolism regulatory protein GA | 97.38 | |
| d1y81a1 | 116 | Hypothetical protein PF0725 {Pyrococcus furiosus [ | 97.37 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 97.34 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 97.23 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 97.22 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 97.21 | |
| d1omoa_ | 320 | Archaeal alanine dehydrogenase {Archaeon Archaeogl | 97.18 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 97.16 | |
| d1x7da_ | 340 | Ornithine cyclodeaminase {Pseudomonas putida [TaxI | 97.1 | |
| d1y7ta1 | 154 | Malate dehydrogenase {Thermus thermophilus [TaxId: | 97.1 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 97.06 | |
| d1up7a1 | 162 | 6-phospho-beta-glucosidase {Thermotoga maritima [T | 97.01 | |
| d2cmda1 | 145 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 96.96 | |
| d1vm6a3 | 128 | Dihydrodipicolinate reductase {Thermotoga maritima | 96.95 | |
| d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 96.93 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 96.91 | |
| d1u8xx1 | 167 | Maltose-6'-phosphate glucosidase GlvA {Bacillus su | 96.91 | |
| d1nvta1 | 177 | Shikimate 5-dehydrogenase AroE {Archaeon Methanoco | 96.89 | |
| d1iuka_ | 136 | Hypothetical protein TT1466 {Thermus thermophilus | 96.85 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 96.84 | |
| d1s6ya1 | 169 | 6-phospho-beta-glucosidase {Bacillus stearothermop | 96.75 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 96.73 | |
| d2d59a1 | 139 | Hypothetical protein PH1109 {Pyrococcus horikoshii | 96.69 | |
| d2csua1 | 129 | Acetate-CoA ligase alpha chain, AcdA, N-terminal d | 96.65 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 96.63 | |
| d1o6za1 | 142 | Malate dehydrogenase {Archaeon Haloarcula marismor | 96.58 | |
| d1lc0a1 | 172 | Biliverdin reductase {Rat (Rattus norvegicus) [Tax | 96.53 | |
| d1b0aa1 | 166 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 96.46 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 96.41 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 96.4 | |
| d1t4ba1 | 146 | Aspartate beta-semialdehyde dehydrogenase {Escheri | 96.31 | |
| d1mv8a3 | 136 | GDP-mannose 6-dehydrogenase, GDP-binding domain {P | 96.31 | |
| d1a4ia1 | 170 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 96.29 | |
| d1b7go1 | 178 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 96.21 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 96.2 | |
| d5mdha1 | 154 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 96.2 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 96.2 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 96.19 | |
| d1mb4a1 | 147 | Aspartate beta-semialdehyde dehydrogenase {Vibrio | 96.15 | |
| d1vkna1 | 176 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 96.12 | |
| d2hjsa1 | 144 | Usg-1 protein homolog PA3116 {Pseudomonas aerugino | 95.96 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 95.94 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 95.79 | |
| d7mdha1 | 175 | Malate dehydrogenase {Sorghum (Sorghum vulgare), c | 95.68 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 95.65 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 95.56 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 95.51 | |
| d2g17a1 | 179 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 95.45 | |
| d2gv8a1 | 335 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 95.44 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 95.43 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 95.42 | |
| d2c5aa1 | 363 | GDP-mannose-3', 5'-epimerase {Thale cress (Arabido | 95.42 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 95.4 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 95.36 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 95.35 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 95.33 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 95.29 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 95.27 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 95.22 | |
| d2czca2 | 172 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 95.2 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 95.16 | |
| d1hwxa1 | 293 | Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: | 95.06 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 95.05 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 95.02 | |
| d1cf2o1 | 171 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 95.0 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 94.97 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 94.96 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 94.93 | |
| d1v9la1 | 242 | Glutamate dehydrogenase {Pyrobaculum islandicum [T | 94.92 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 94.91 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 94.85 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 94.85 | |
| d1d5ta1 | 336 | Guanine nucleotide dissociation inhibitor, GDI {Co | 94.82 | |
| d2q46a1 | 252 | Hypothetical protein At5g02240 (T7H20_290) {Thale | 94.82 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 94.8 | |
| d3etja2 | 78 | N5-carboxyaminoimidazole ribonucleotide synthetase | 94.77 | |
| d1yl7a1 | 135 | Dihydrodipicolinate reductase {Mycobacterium tuber | 94.75 | |
| d1bdba_ | 276 | Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps | 94.74 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 94.73 | |
| d1k0ia1 | 292 | p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a | 94.72 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 94.67 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 94.66 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 94.63 | |
| d1b26a1 | 234 | Glutamate dehydrogenase {Thermotoga maritima [TaxI | 94.57 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 94.55 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 94.52 | |
| d2dt5a2 | 126 | Transcriptional repressor Rex, C-terminal domain { | 94.48 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 94.45 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 94.44 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 94.43 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 94.42 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 94.41 | |
| d1b5qa1 | 347 | Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | 94.37 | |
| d2nu7a1 | 119 | Succinyl-CoA synthetase, alpha-chain, N-terminal ( | 94.32 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 94.28 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 94.26 | |
| d2bcgg1 | 297 | Guanine nucleotide dissociation inhibitor, GDI {Ba | 94.26 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 94.25 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 94.19 | |
| d1oi7a1 | 121 | Succinyl-CoA synthetase, alpha-chain, N-terminal ( | 94.16 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 94.1 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 94.02 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 93.99 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 93.97 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 93.95 | |
| d1udca_ | 338 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 93.94 | |
| d1kifa1 | 246 | D-aminoacid oxidase, N-terminal domain {Pig (Sus s | 93.93 | |
| d1diha1 | 162 | Dihydrodipicolinate reductase {Escherichia coli [T | 93.93 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 93.89 | |
| d3c96a1 | 288 | Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: | 93.84 | |
| d1o5ia_ | 234 | beta-keto acyl carrier protein reductase {Thermoto | 93.81 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 93.79 | |
| d2gqfa1 | 253 | Hypothetical protein HI0933 {Haemophilus influenza | 93.61 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 93.56 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 93.55 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 93.55 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 93.55 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 93.53 | |
| d1xgka_ | 350 | Negative transcriptional regulator NmrA {Aspergill | 93.49 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 93.42 | |
| d1cjca2 | 230 | Adrenodoxin reductase of mitochondrial p450 system | 93.35 | |
| d2pd4a1 | 274 | Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2 | 93.34 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 93.32 | |
| d1edza1 | 171 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 93.28 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 93.22 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 93.21 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 93.15 | |
| d1yova1 | 529 | Amyloid beta precursor protein-binding protein 1, | 93.14 | |
| d1gtma1 | 239 | Glutamate dehydrogenase {Archaeon Pyrococcus furio | 93.13 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 93.09 | |
| d2cvoa1 | 183 | Putative semialdehyde dehydrogenase {Rice (Oryza s | 93.07 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 92.98 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 92.96 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 92.9 | |
| d1pj5a2 | 305 | N,N-dimethylglycine oxidase {Arthrobacter globifor | 92.89 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 92.86 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 92.85 | |
| d2ag5a1 | 245 | Dehydrogenase/reductase SDR family member 6, DHRS6 | 92.82 | |
| d1i8ta1 | 298 | UDP-galactopyranose mutase, N-terminal domain {Esc | 92.72 | |
| d1a9xa4 | 121 | Carbamoyl phosphate synthetase (CPS), large subuni | 92.63 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 92.54 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 92.53 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 92.53 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 92.5 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 92.48 | |
| d1ks9a1 | 124 | Ketopantoate reductase PanE {Escherichia coli [Tax | 92.44 | |
| d2bd0a1 | 240 | Bacterial sepiapterin reductase {Chlorobium tepidu | 92.42 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 92.4 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 92.36 | |
| d2o23a1 | 248 | Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho | 92.12 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 92.12 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 92.09 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 91.95 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 91.84 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 91.82 | |
| d2ew8a1 | 247 | (s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb | 91.8 | |
| d2gf3a1 | 281 | Sarcosine oxidase {Bacillus sp., strain b0618 [Tax | 91.79 | |
| d1w4xa1 | 298 | Phenylacetone monooxygenase {Thermobifida fusca [T | 91.73 | |
| d2gz1a1 | 154 | Aspartate beta-semialdehyde dehydrogenase {Strepto | 91.72 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 91.66 | |
| d1i36a1 | 112 | Conserved hypothetical protein MTH1747 {Archaeon M | 91.47 | |
| d1edoa_ | 244 | beta-keto acyl carrier protein reductase {Oil seed | 91.37 | |
| d2v5za1 | 383 | Monoamine oxidase B {Human (Homo sapiens) [TaxId: | 91.26 | |
| d1ulua_ | 256 | Enoyl-ACP reductase {Thermus thermophilus [TaxId: | 91.25 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 91.2 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 91.19 | |
| d1ebfa1 | 168 | Homoserine dehydrogenase {Baker's yeast (Saccharom | 91.12 | |
| d1lqta2 | 239 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 91.08 | |
| d2i0za1 | 251 | Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396] | 91.05 | |
| d1vl0a_ | 281 | DTDP-4-dehydrorhamnose reductase RfbD {Clostridium | 91.04 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 90.7 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 90.42 | |
| d1fjha_ | 257 | 3-alpha-hydroxysteroid dehydrogenase {Comamonas te | 90.32 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 90.19 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 90.15 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 90.02 | |
| d2bkaa1 | 232 | TAT-interacting protein TIP30 {Human (Homo sapiens | 89.66 | |
| d1qsga_ | 258 | Enoyl-ACP reductase {Escherichia coli [TaxId: 562] | 89.63 | |
| d1e5da1 | 152 | Rubredoxin oxygen:oxidoreductase (ROO), C-terminal | 89.53 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 89.44 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 89.38 | |
| d1db3a_ | 357 | GDP-mannose 4,6-dehydratase {Escherichia coli [Tax | 89.24 | |
| d1y1pa1 | 342 | Aldehyde reductase II {Sporobolomyces salmonicolor | 88.97 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 88.75 | |
| d1euca1 | 130 | Succinyl-CoA synthetase, alpha-chain, N-terminal ( | 88.69 | |
| d1i24a_ | 393 | Sulfolipid biosynthesis protein SQD1 {Thale cress | 88.67 | |
| d1e7wa_ | 284 | Dihydropteridin reductase (pteridine reductase) {L | 88.64 | |
| d1pn0a1 | 360 | Phenol hydroxylase {Soil-living yeast (Trichosporo | 88.54 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 88.48 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 88.41 | |
| d1nhpa1 | 198 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 88.23 | |
| d1ojta2 | 125 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 88.13 | |
| d1oaaa_ | 259 | Sepiapterin reductase {Mouse (Mus musculus) [TaxId | 88.12 | |
| d1gz6a_ | 302 | (3R)-hydroxyacyl-CoA dehydrogenase domain of estra | 87.96 | |
| d1bgva1 | 255 | Glutamate dehydrogenase {Clostridium symbiosum [Ta | 87.83 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 87.67 | |
| d2blla1 | 342 | Polymyxin resistance protein ArnA (PrmI) {Escheric | 87.44 | |
| d1rkxa_ | 356 | CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc | 87.19 | |
| d1v59a1 | 233 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 86.84 | |
| d1t2aa_ | 347 | GDP-mannose 4,6-dehydratase {Human (Homo sapiens) | 86.61 | |
| d2h1qa1 | 251 | Hypothetical protein Dhaf_3308 {Desulfitobacterium | 85.75 | |
| d1sbya1 | 254 | Drosophila alcohol dehydrogenase {Fly (Drosophila | 85.7 | |
| d1mxha_ | 266 | Dihydropteridin reductase (pteridine reductase) {T | 85.58 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 85.58 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 85.52 | |
| d2h7ma1 | 268 | Enoyl-ACP reductase {Mycobacterium tuberculosis, T | 85.44 | |
| d1oc2a_ | 346 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 85.4 | |
| d1rp0a1 | 278 | Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara | 84.77 | |
| d2b69a1 | 312 | UDP-glucuronate decarboxylase 1 {Human (Homo sapie | 84.67 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 84.57 | |
| d1ek6a_ | 346 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 84.4 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 84.36 | |
| d2f5va1 | 379 | Pyranose 2-oxidase {White-rot fungus (Peniophora s | 84.28 | |
| d2a35a1 | 212 | Hypothetical protein PA4017 {Pseudomonas aeruginos | 83.95 | |
| d1yo6a1 | 250 | Putative carbonyl reductase sniffer {Caenorhabditi | 83.87 | |
| d1q1ra1 | 185 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 83.39 | |
| d1uaya_ | 241 | Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t | 83.17 | |
| d1gesa1 | 217 | Glutathione reductase {Escherichia coli [TaxId: 56 | 83.17 | |
| d1xhca1 | 167 | NADH oxidase /nitrite reductase {Pyrococcus furios | 82.86 | |
| d1yovb1 | 426 | UBA3 {Human (Homo sapiens) [TaxId: 9606]} | 82.68 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 82.67 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 82.4 | |
| d1uzma1 | 237 | beta-keto acyl carrier protein reductase {Mycobact | 82.23 | |
| d1y0pa2 | 308 | Flavocytochrome c3 (respiratory fumarate reductase | 81.82 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 81.52 | |
| d1pj3a1 | 294 | Mitochondrial NAD(P)-dependent malic enzyme {Human | 81.39 | |
| d1rpna_ | 321 | GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos | 81.24 | |
| d2g82a1 | 168 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 81.19 | |
| d1n7ha_ | 339 | GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop | 81.17 | |
| d1vdca1 | 192 | Thioredoxin reductase {Mouse-ear cress (Arabidopsi | 80.97 | |
| d1zmta1 | 252 | Halohydrin dehalogenase HheC {Agrobacterium tumefa | 80.95 | |
| d1dlja3 | 108 | UDP-glucose dehydrogenase (UDPGDH), C-terminal (UD | 80.82 | |
| d1w5fa1 | 194 | Cell-division protein FtsZ {Thermotoga maritima [T | 80.82 | |
| d1dxla1 | 221 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 80.67 | |
| d1ojta1 | 229 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 80.16 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 80.15 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 80.12 |
| >d2pgda1 a.100.1.1 (A:177-473) 6-phosphogluconate dehydrogenase (6PGD) {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: 6-phosphogluconate dehydrogenase (6PGD) species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=100.00 E-value=3.9e-45 Score=358.88 Aligned_cols=131 Identities=76% Similarity=1.242 Sum_probs=127.1
Q ss_pred CCcchhHHhhhhHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhccCcchhHHHHHHHHHhcccCCCCCcchhhhccc
Q psy9637 356 GAGHFVKMVHNGIEYGDMQLICEAYHLMTGALGMSHDEMSAVFEDWNKGELDSFLIEITKDILKFKDTDGAPLVEKIKDY 435 (490)
Q Consensus 356 g~gh~vkmvhngiey~~m~~~~E~~~~~~~~~~~~~~~~~~~~~~w~~g~~~s~l~~~~~~~~~~~~~~~~~~l~~i~~~ 435 (490)
|||||||||||||||||||+|||+|++|++.++++++||++||+.||+|.++|||+||++++|++||++++++||.|.|+
T Consensus 1 GsGH~vKMVHNgIEY~~mq~iaE~y~~l~~~~~~~~~~i~~vf~~w~~~~l~syLleit~~il~~kd~~~~~~ld~I~d~ 80 (297)
T d2pgda1 1 GAGHFVKMVHNGIEYGDMQLICEAYHLMKDVLGLGHKEMAKAFEEWNKTELDSFLIEITASILKFQDADGKHLLPKIRDS 80 (297)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTTTTTCBHHHHHHHHHHHCBCTTSSBSGGGSCCC
T ss_pred CCchhhhhhccHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhCCCccHHHHHHHHHHHhccCCCcCcchhhhhcc
Confidence 89999999999999999999999999999988999999999999999999999999999999998887788999999999
Q ss_pred cCCCcchHHHHHHHHhcCCCchhhHHHHHHHhhccCchHHHHHHhhcCCCC
Q psy9637 436 AGQKGTGKWTAISALDYGVPVTLIGESVFSRCLSSLFDERQKASQVLQGPN 486 (490)
Q Consensus 436 ~~~~g~g~w~~~~a~~~~~p~~~i~~a~~~r~~s~~~~~r~~~~~~~~~~~ 486 (490)
++|||||+||+++|+++|||+|+|++||++|++|+.|++|++.++.++++.
T Consensus 81 a~~kGTG~Wt~~~Al~lgvp~p~I~~Av~aR~~S~~k~~R~~~~~~~~~~~ 131 (297)
T d2pgda1 81 AGQKGTGKWTAISALEYGVPVTLIGEAVFARCLSSLKDERIQASKKLKGPQ 131 (297)
T ss_dssp CCCCSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHCHHHHHHHHHHCCCCC
T ss_pred ccCCCchHHHHHHHHHcCCCchHHHHHHhhHhhcccHHHHHHhhhcccCcc
Confidence 999999999999999999999999999999999999999999999998764
|
| >d1pgja1 a.100.1.1 (A:179-478) 6-phosphogluconate dehydrogenase (6PGD) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: 6-phosphogluconate dehydrogenase (6PGD) species: Trypanosoma brucei [TaxId: 5691]
Probab=100.00 E-value=5.2e-45 Score=359.20 Aligned_cols=130 Identities=38% Similarity=0.643 Sum_probs=124.9
Q ss_pred CCcchhHHhhhhHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhccCc-chhHHHHHHHHHhcccCCCCCcchhhhcc
Q psy9637 356 GAGHFVKMVHNGIEYGDMQLICEAYHLMTGALGMSHDEMSAVFEDWNKGE-LDSFLIEITKDILKFKDTDGAPLVEKIKD 434 (490)
Q Consensus 356 g~gh~vkmvhngiey~~m~~~~E~~~~~~~~~~~~~~~~~~~~~~w~~g~-~~s~l~~~~~~~~~~~~~~~~~~l~~i~~ 434 (490)
|||||||||||||||||||+|||+|++||. ++++++||++||+.||+++ ++|||+||+++||+++|++|.|++|.|.|
T Consensus 1 GsGH~vKmvHNgIEy~~mq~iaE~~~~l~~-~~~~~~~i~~~f~~w~~~~~l~syL~eit~~il~~~d~~g~~l~d~I~d 79 (300)
T d1pgja1 1 GAGSCVKMYHNSGEYAILQIWGEVFDILRA-MGLNNDEVAAVLEDWKSKNFLKSYMLDISIAAARAKDKDGSYLTEHVMD 79 (300)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCCHHHHHHHHHHHHHTSTTCBHHHHHHHHHHHCBCTTSSBGGGGBCC
T ss_pred CCccchhhhcchHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHhCCCeehHHHHHHHHHHHhhcCCCCchhHHHhcc
Confidence 899999999999999999999999999996 8999999999999998875 99999999999999888888899999999
Q ss_pred ccCCCcchHHHHHHHHhcCCCchhhHHHHHHHhhccCchHHHHHHhhcCCCC
Q psy9637 435 YAGQKGTGKWTAISALDYGVPVTLIGESVFSRCLSSLFDERQKASQVLQGPN 486 (490)
Q Consensus 435 ~~~~~g~g~w~~~~a~~~~~p~~~i~~a~~~r~~s~~~~~r~~~~~~~~~~~ 486 (490)
+++|||||+||+++|+++|||+|+|++||++|++|++|++|+++++.+.+|.
T Consensus 80 ~a~~kGTG~Wt~~~al~~gvp~p~i~~Av~aR~~S~~k~~R~~~~~~~~~~~ 131 (300)
T d1pgja1 80 RIGSKGTGLWSAQEALEIGVPAPSLNMAVVSRQFTMYKTERQANASNAPGIT 131 (300)
T ss_dssp CCCCCSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHTHHHHHHHHHHSTTTT
T ss_pred cccCCchHHHHHHHHHHcCCCccHHHHHHHHHHHhCChHHHHHHHhhccccc
Confidence 9999999999999999999999999999999999999999999999997653
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=99.97 E-value=6.4e-33 Score=250.72 Aligned_cols=157 Identities=23% Similarity=0.389 Sum_probs=148.2
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
|||||||+|.||.+||++|+++||+|++|||++++.+.+.+.+.. .+.++.|+++. +|+||+|||++.++++
T Consensus 1 MkIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~~~-----~~~~~~e~~~~---~d~ii~~v~~~~~v~~ 72 (161)
T d1vpda2 1 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAE-----TASTAKAIAEQ---CDVIITMLPNSPHVKE 72 (161)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCE-----ECSSHHHHHHH---CSEEEECCSSHHHHHH
T ss_pred CEEEEEehhHHHHHHHHHHHHCCCeEEEEeCCcchhHHHHHhhhh-----hcccHHHHHhC---CCeEEEEcCCHHHHHH
Confidence 589999999999999999999999999999999999999887653 68999999998 9999999999999999
Q ss_pred HH---HhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCCCccccccCC-ccCCCCCcchHHHHHHHHHh
Q psy9637 85 FI---DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGGEDGARYGP-SLMPGGNPAAWPALKPIFQK 160 (490)
Q Consensus 85 vl---~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg~~~a~~G~-~im~GG~~~a~~~v~~ll~~ 160 (490)
++ +.+.+.+.+|++|||+||+.|..++++.+.++++|++|+|+|++||+.+|+.|+ ++|+||+++++++++|+|+.
T Consensus 73 v~~~~~~~~~~~~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vdapv~gg~~~a~~g~l~~~~gG~~~~~~~~~~il~~ 152 (161)
T d1vpda2 73 VALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKAKGVEMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKA 152 (161)
T ss_dssp HHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTCEEEECCEESHHHHHHHTCEEEEEESCHHHHHHHHHHHHT
T ss_pred HHhCCcchhhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCceecccccCChhHHhcCCeEEEEcCCHHHHHHHHHHHHH
Confidence 98 568888999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred hCCceeeCC
Q psy9637 161 LNPSFETSA 169 (490)
Q Consensus 161 l~~~~~~~g 169 (490)
++.+++|+|
T Consensus 153 ~~~~i~~~G 161 (161)
T d1vpda2 153 MAGSVVHTG 161 (161)
T ss_dssp TEEEEEEEE
T ss_pred hcCceEECC
Confidence 999988865
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.97 E-value=1.1e-31 Score=242.94 Aligned_cols=158 Identities=23% Similarity=0.413 Sum_probs=146.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
|+||||||+|.||.+||+||+++||+|.+|||++++.+.+...+.. ...++.+++.. +|+|++|||++.+++
T Consensus 1 M~kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~~~~~~~~~~~~~~-----~~~~~~e~~~~---~diii~~v~~~~~~~ 72 (162)
T d3cuma2 1 MKQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGAS-----AARSARDAVQG---ADVVISMLPASQHVE 72 (162)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCE-----ECSSHHHHHTS---CSEEEECCSCHHHHH
T ss_pred CCEEEEEEEHHHHHHHHHHHHHCCCeEEEEECchhhhhhhhhhhcc-----ccchhhhhccc---cCeeeecccchhhHH
Confidence 3589999999999999999999999999999999999999877653 57889999887 899999999998888
Q ss_pred HHHH---hhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCCCccccccCC-ccCCCCCcchHHHHHHHHH
Q psy9637 84 DFID---KLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGGEDGARYGP-SLMPGGNPAAWPALKPIFQ 159 (490)
Q Consensus 84 ~vl~---~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg~~~a~~G~-~im~GG~~~a~~~v~~ll~ 159 (490)
+++. ++.+.+.+|++|||+||+.|..+.++.+.+.++|++|+|+||+||+.+|++|+ ++|+||+++++++++|+|+
T Consensus 73 ~v~~~~~~~~~~l~~g~iiid~st~~p~~~~~~~~~~~~~gi~~~dapv~Gg~~~a~~G~l~~~~gG~~~~~~~~~~il~ 152 (162)
T d3cuma2 73 GLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERGLAMLDAPVSGGTAGAAAGTLTFMVGGDAEALEKARPLFE 152 (162)
T ss_dssp HHHHSTTCHHHHSCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEESCHHHHHHTCEEEEEESCHHHHHHHHHHHH
T ss_pred HHHhccccccccCCCCCEEEECCCCCHHHHHHHHHHHHHCCCcEEecccccCccccccCCeEEEecCCHHHHHHHHHHHH
Confidence 8874 46778999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred hhCCceeeCC
Q psy9637 160 KLNPSFETSA 169 (490)
Q Consensus 160 ~l~~~~~~~g 169 (490)
.++.+++|+|
T Consensus 153 ~~~~~v~~~G 162 (162)
T d3cuma2 153 AMGRNIFHAG 162 (162)
T ss_dssp HHEEEEEEEE
T ss_pred HHcCccEECc
Confidence 9999988865
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=99.97 E-value=2.4e-31 Score=243.83 Aligned_cols=163 Identities=72% Similarity=1.192 Sum_probs=151.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
+.+|||||+|.||.+||+||+++||+|++|||++++++++.+.+........+.+.+++++.+..+|++++++|++.++.
T Consensus 2 ~~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ii~~~~~~~~v~ 81 (176)
T d2pgda2 2 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAGQAVD 81 (176)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSCTTHHHH
T ss_pred CCcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHhccccccccchhhhhhhhhhhcccceEEEecCchHHHH
Confidence 35799999999999999999999999999999999999999876654444467788888887788999999999999999
Q ss_pred HHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCCCccccccCCccCCCCCcchHHHHHHHHHhhCC
Q psy9637 84 DFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGGEDGARYGPSLMPGGNPAAWPALKPIFQKLNP 163 (490)
Q Consensus 84 ~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg~~~a~~G~~im~GG~~~a~~~v~~ll~~l~~ 163 (490)
++.+++.+.+++|++|||+||+.|.++.+..+.+.++|++|+|+|++||+.+|+.|.++|+||+++++++++|+|+.++.
T Consensus 82 ~v~~~l~~~~~~g~iiid~sT~~~~~~~~~~~~~~~~g~~~ldapvsGg~~~A~~G~~~~~gG~~~~~~~~~~il~~~~~ 161 (176)
T d2pgda2 82 NFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILFVGSGVSGGEDGARYGPSLMPGGNKEAWPHIKAIFQGIAA 161 (176)
T ss_dssp HHHHHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCCEEEEEECTTTHHHHHHHHHHHSC
T ss_pred HHHHHHHhccccCcEEEecCcchhHHHHHHHHHHHhcCCceeccccccCcccccCCcEEEcCCCHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cee
Q psy9637 164 SFE 166 (490)
Q Consensus 164 ~~~ 166 (490)
++.
T Consensus 162 kv~ 164 (176)
T d2pgda2 162 KVG 164 (176)
T ss_dssp BCT
T ss_pred ccC
Confidence 875
|
| >d2pgda1 a.100.1.1 (A:177-473) 6-phosphogluconate dehydrogenase (6PGD) {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: 6-phosphogluconate dehydrogenase (6PGD) species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=99.97 E-value=1.4e-30 Score=254.89 Aligned_cols=158 Identities=75% Similarity=1.291 Sum_probs=153.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhcccchhhHhHhHhHHhhccCcccccccCChh
Q psy9637 177 DKKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGGCIIRSVFLGNIKAAFDKNPALSNLLLDPF 256 (490)
Q Consensus 177 ~~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~~~v~~i~~~g~~~~s~~l~~i~~~~~~~~~~~~~~~~~~ 256 (490)
+...+++.++|+++++.+++++|+|.+.++++++++|++|..+++++|++||||||++++.+.+++.+++.+.+.++.+.
T Consensus 138 ~~~~~i~~l~~al~~~~i~syaQGf~ll~~as~~~~w~ldl~~ia~iW~~GcIIrS~LL~~i~~a~~~~~~l~nl~~~~~ 217 (297)
T d2pgda1 138 DKKSFLEDIRKALYASKIISYAQGFMLLRQAATEFGWTLNYGGIALMWRGGCIIRSVFLGKIKDAFDRNPGLQNLLLDDF 217 (297)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHTTSSSTTCBTHHHHHHHHHHHCTTCSCGGGSHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCcCccHHHHHHHHcCCCeeeHHHHHHHHHHHHhCCCccchhhcHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhCCChhhhHHHHHHhhcccccccccCCCCceeecccCC
Q psy9637 257 FKDAIHATQSSWRAVVSQSALLGIPTPAFATALAFYDGYRSKRLPANLLQAQRDYFGAHTYELLAAPGKFVHTNWTGH 334 (490)
Q Consensus 257 f~~~l~~~~kDl~~~~~~A~~~gv~~P~~~aa~~~~~~~~~~g~~~~~~~a~rd~fgah~~~r~~~~~~~~h~~w~~~ 334 (490)
|...+....+++|.++..+.+.|+|+|++++++.+|+..+++.+|.+++||||||||+|+|+|+|++|.+||++|+++
T Consensus 218 ~~~~l~~~~~~~r~~v~~ai~~gip~P~lssaL~y~~~~~~~~lp~~lIQAqRD~FG~H~~~r~d~~G~f~H~~W~~~ 295 (297)
T d2pgda1 218 FKSAVENCQDSWRRAISTGVQAGIPMPCFTTALSFYDGYRHAMLPANLIQAQRDYFGAHTYELLAKPGQFIHTNWTGH 295 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHCSSCTHHHHHHHHHHHHCCCBCCSSSTTCCBCCCCSCS
T ss_pred HHHHHhhccHHHHHHHHHHHHcCCChHHHHHHHHHHHHhccCCchhHHHHHHHHHhcCCCeeecCCCCCcccCCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999889999875
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=99.96 E-value=1.5e-29 Score=231.91 Aligned_cols=168 Identities=40% Similarity=0.793 Sum_probs=154.7
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCC---CCeeccCCHHHHHhhCCCCcEEEEecCCCch
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKG---TNIIGAHSLEELVKNLKKPRRVMMLVKAGSA 81 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~---~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~ 81 (490)
|||||||+|.||.+||++|+++||+|.+|||++++.+++.+.+... ..+....+..+++..+..++.+++++++...
T Consensus 2 MkIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (178)
T d1pgja2 2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILVQAGAA 81 (178)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECCCCSHH
T ss_pred CEEEEEeehHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCccccccchhhhhhhhHHHHhcccceEEEEeecCcch
Confidence 6899999999999999999999999999999999999998876531 1234567788888888889999999999999
Q ss_pred HHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCCCccccccCCccCCCCCcchHHHHHHHHHhh
Q psy9637 82 VDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGGEDGARYGPSLMPGGNPAAWPALKPIFQKL 161 (490)
Q Consensus 82 v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg~~~a~~G~~im~GG~~~a~~~v~~ll~~l 161 (490)
++.++..+.+.+.+++++||++|+.|.++.++.+.+.+++++|+|+||+|++.+|+.|+++|+||+++++++++|+|+.+
T Consensus 82 ~~~~~~~~~~~~~~~~iii~~st~~~~~~~~~~~~l~~~~~~~ldapv~g~~~~a~~g~~~mvgG~~~~~~~v~pil~~~ 161 (178)
T d1pgja2 82 TDSTIEQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGMGISGGEEGARKGPAFFPGGTLSVWEEIRPIVEAA 161 (178)
T ss_dssp HHHHHHHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEEEEEEEESHHHHHHHCCEEEEEECHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhccccceecccCccchhHHHHHHHHHhhcceeEecccccCCcchhcCCcEEEeeCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcee----eCCCCC
Q psy9637 162 NPSFE----TSAPTP 172 (490)
Q Consensus 162 ~~~~~----~~g~~g 172 (490)
+.++. |+|+.|
T Consensus 162 ~~~~~~~~~~~g~~G 176 (178)
T d1pgja2 162 AAKADDGRPCVTMNG 176 (178)
T ss_dssp SCBCTTSCBSCCCCC
T ss_pred hccccCCCCccCCCC
Confidence 99887 888876
|
| >d1pgja1 a.100.1.1 (A:179-478) 6-phosphogluconate dehydrogenase (6PGD) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: 6-phosphogluconate dehydrogenase (6PGD) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.95 E-value=6.7e-28 Score=236.57 Aligned_cols=153 Identities=27% Similarity=0.508 Sum_probs=137.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhcccchhhHhHhHhHHhhccCcccccccCChhH
Q psy9637 178 KKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGGCIIRSVFLGNIKAAFDKNPALSNLLLDPFF 257 (490)
Q Consensus 178 ~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~~~v~~i~~~g~~~~s~~l~~i~~~~~~~~~~~~~~~~~~f 257 (490)
....+|.++|+++++++++++|+|.+.++++++++|++|..+++++|++||||||++|+.+.++|.++|.+.+++. .|
T Consensus 144 ~~~~i~~l~~Al~~~~i~syaQGf~LL~~as~~~~w~ldl~~Ia~iWr~GCIIRS~LL~~i~~a~~~~~~l~~l~~--~f 221 (300)
T d1pgja1 144 SGPEIKQLYDSVCIAIISCYAQMFQCLREMDKVHNFGLNLPATIATFRAGCILQGYLLKPMTEAFEKNPNISNLMC--AF 221 (300)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHTTSSSSTTCBTTHHHHHHHHHHCTTCSCTTG--GG
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCccchHHHHHhcCCceeeHHHHHHHHHHhhcCCccchhhH--HH
Confidence 4578999999999999999999999999999999999999999999999999999999999999999998777653 36
Q ss_pred HHHHHHHHHHHHHHHH-HHHHcCCCchHHHHHHHHHHHHHhCCChh-hhHHHHHHhhcccccccccCCCCceeecccC
Q psy9637 258 KDAIHATQSSWRAVVS-QSALLGIPTPAFATALAFYDGYRSKRLPA-NLLQAQRDYFGAHTYELLAAPGKFVHTNWTG 333 (490)
Q Consensus 258 ~~~l~~~~kDl~~~~~-~A~~~gv~~P~~~aa~~~~~~~~~~g~~~-~~~~a~rd~fgah~~~r~~~~~~~~h~~w~~ 333 (490)
...+....++++.++. .+.+.|+|+|++++++.||+..+++.+|. +++||||||||+|||+|+|++| .||++|++
T Consensus 222 ~~~~~~~~~~~~r~v~~~~~~~gip~P~lssaL~y~~~~~~~~l~~anLIQAqRD~FGaH~~~r~d~~g-~~H~~W~~ 298 (300)
T d1pgja1 222 QTEIRAGLQNYRDMVALITSKLEVSIPVLSASLNYVTAMFTPTLKYGQLVSLQRDVFGRHGYERVDKDG-RESFQWPE 298 (300)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHTCSCCTHHHHHHHHHHHHHCCCEEBSSSSS-EECCCCCC
T ss_pred HHHHHHhhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCCchhHHHHHHHhhcCCCCeeeCCCCC-CcCCCCCC
Confidence 6566666666666555 56788999999999999999999999995 9999999999999999999986 58999975
|
| >d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=99.95 E-value=7.8e-29 Score=222.47 Aligned_cols=154 Identities=26% Similarity=0.395 Sum_probs=138.6
Q ss_pred cEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHHH
Q psy9637 6 DIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDDF 85 (490)
Q Consensus 6 ~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~v 85 (490)
||||||+|.||.+||+||.++||.| +|||++++.+.+.+.+.. ...+. +.+.+ +|++++++|++.++..+
T Consensus 2 kIg~IGlG~MG~~ma~~L~~~g~~~-~~~~~~~~~~~~~~~~~~-----~~~~~-~~~~~---~~~~i~~~~~~~~v~~~ 71 (156)
T d2cvza2 2 KVAFIGLGAMGYPMAGHLARRFPTL-VWNRTFEKALRHQEEFGS-----EAVPL-ERVAE---ARVIFTCLPTTREVYEV 71 (156)
T ss_dssp CEEEECCSTTHHHHHHHHHTTSCEE-EECSSTHHHHHHHHHHCC-----EECCG-GGGGG---CSEEEECCSSHHHHHHH
T ss_pred eEEEEeHHHHHHHHHHHHHhCCCEE-EEeCCHHHHHHHHHHcCC-----ccccc-ccccc---eeEEEecccchhhhhhh
Confidence 7999999999999999999999865 789998988888776543 23343 44444 89999999999999999
Q ss_pred HHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCCCccccccCC-ccCCCCCcchHHHHHHHHHhhCCc
Q psy9637 86 IDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGGEDGARYGP-SLMPGGNPAAWPALKPIFQKLNPS 164 (490)
Q Consensus 86 l~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg~~~a~~G~-~im~GG~~~a~~~v~~ll~~l~~~ 164 (490)
...+.+.+.++.++||++|+.|..++++.+.++++|++|+|+||+||+.+|++|+ ++|+||+++++++++|+| +++.+
T Consensus 72 ~~~l~~~~~~~~~iid~sT~~p~~~~~~~~~~~~~gi~~ldapVsGg~~~A~~G~L~~~vgG~~~~~~~~~p~L-~~~~~ 150 (156)
T d2cvza2 72 AEALYPYLREGTYWVDATSGEPEASRRLAERLREKGVTYLDAPVSGGTSGAEAGTLTVMLGGPEEAVERVRPFL-AYAKK 150 (156)
T ss_dssp HHHHTTTCCTTEEEEECSCCCHHHHHHHHHHHHTTTEEEEECCEESHHHHHHHTCEEEEEESCHHHHHHHGGGC-TTEEE
T ss_pred hccccccccccccccccccCCHHHHHHHHHHHHHcCCeEEeccccCchhhhccCCEEEEEeCCHHHHHHHHHHH-HhcCc
Confidence 9999999999999999999999999999999999999999999999999999999 999999999999999999 59999
Q ss_pred eeeCCC
Q psy9637 165 FETSAP 170 (490)
Q Consensus 165 ~~~~g~ 170 (490)
++|+||
T Consensus 151 v~~~GP 156 (156)
T d2cvza2 151 VVHVGP 156 (156)
T ss_dssp EEEEES
T ss_pred CEEeCc
Confidence 999886
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.86 E-value=2.6e-22 Score=178.65 Aligned_cols=149 Identities=16% Similarity=0.154 Sum_probs=121.0
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
|||||||+|.||.+||++|+++||+|++||+++++...+...+.. ...++.|+++. +|+||+|||++ ...+
T Consensus 1 MkIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~-----~~~~~~e~~~~---~diIi~~v~~~-~~~~ 71 (152)
T d1i36a2 1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVG-----VTETSEEDVYS---CPVVISAVTPG-VALG 71 (152)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHT-----CEECCHHHHHT---SSEEEECSCGG-GHHH
T ss_pred CEEEEEcHHHHHHHHHHHHHHCCCeEEEEcCchhHHHHHhhhccc-----ccccHHHHHhh---cCeEEEEecCc-hHHH
Confidence 589999999999999999999999999999988877776665543 46789999988 99999999996 5566
Q ss_pred HHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCCCccccccCCccCCCC-CcchHHHHHHHHHhhCC
Q psy9637 85 FIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGGEDGARYGPSLMPGG-NPAAWPALKPIFQKLNP 163 (490)
Q Consensus 85 vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg~~~a~~G~~im~GG-~~~a~~~v~~ll~~l~~ 163 (490)
++..+.+.+ ++++||++|..|..+++..+.+++. .|+|+|++|++..+..+..++++| +.+.++ .|+.++.
T Consensus 72 ~~~~~~~~~--~~~~id~st~~p~~~~~l~~~~~~~--~~~d~~v~g~~~~~~~~~~~~~~G~~~~~~~----~l~~~g~ 143 (152)
T d1i36a2 72 AARRAGRHV--RGIYVDINNISPETVRMASSLIEKG--GFVDAAIMGSVRRKGADIRIIASGRDAEEFM----KLNRYGL 143 (152)
T ss_dssp HHHHHHTTC--CSEEEECSCCCHHHHHHHHHHCSSS--EEEEEEECSCHHHHGGGCEEEEESTTHHHHH----GGGGGTC
T ss_pred HHHhhcccC--CceeeccCcCCHHHHHHHHHHHhcc--CCCcccccCCcccccCCcEEEEECCCHHHHH----HHHHcCC
Confidence 666666654 6899999999998888887776544 499999999999998888544444 444443 3788898
Q ss_pred ceeeCCC
Q psy9637 164 SFETSAP 170 (490)
Q Consensus 164 ~~~~~g~ 170 (490)
++.++|.
T Consensus 144 ~i~~~G~ 150 (152)
T d1i36a2 144 NIEVRGR 150 (152)
T ss_dssp EEEECSS
T ss_pred eeeEcCC
Confidence 8888775
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=99.84 E-value=7.2e-21 Score=171.26 Aligned_cols=155 Identities=16% Similarity=0.245 Sum_probs=121.7
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
|||||||+|.||.+||++|.++||+|++|||+++..+++.+.+.. ....+..+.++. +|+||+|+|.. .+++
T Consensus 1 MkI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~~~~~----~~~~~~~~~~~~---~DiIilavp~~-~~~~ 72 (165)
T d2f1ka2 1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLV----DEAGQDLSLLQT---AKIIFLCTPIQ-LILP 72 (165)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTSC----SEEESCGGGGTT---CSEEEECSCHH-HHHH
T ss_pred CEEEEEeecHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHhhcc----ceeeeecccccc---cccccccCcHh-hhhh
Confidence 589999999999999999999999999999999999988776542 112233344444 99999999985 8999
Q ss_pred HHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHc--cccccccCCCCCcccccc----CC-cc---CCCCCcchHHHH
Q psy9637 85 FIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAK--GLLYVGCGVSGGEDGARY----GP-SL---MPGGNPAAWPAL 154 (490)
Q Consensus 85 vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~--gi~~ld~~vsGg~~~a~~----G~-~i---m~GG~~~a~~~v 154 (490)
+++++.+.++++.+|+|+++........ ...+... +.|.+..|..+|+..+.. +. .+ +.++++++++.+
T Consensus 73 vl~~l~~~l~~~~iv~~~~s~~~~~~~~-~~~~~~~~~~~h~~~~~~~~g~~~a~~~l~~~~~~il~~~~~~~~~~~~~v 151 (165)
T d2f1ka2 73 TLEKLIPHLSPTAIVTDVASVKTAIAEP-ASQLWSGFIGGHPMAGTAAQGIDGAEENLFVNAPYVLTPTEYTDPEQLACL 151 (165)
T ss_dssp HHHHHGGGSCTTCEEEECCSCCHHHHHH-HHHHSTTCEEEEECCCCSCSSGGGCCTTTTTTCEEEEEECTTCCHHHHHHH
T ss_pred hhhhhhhhcccccceeeccccchHHHHH-HHHhhcccccceeeecccccchhhhcccccCCCeEEEEeCCCCCHHHHHHH
Confidence 9999999999999999999887544443 3333222 567777787777776642 33 33 358899999999
Q ss_pred HHHHHhhCCceeeC
Q psy9637 155 KPIFQKLNPSFETS 168 (490)
Q Consensus 155 ~~ll~~l~~~~~~~ 168 (490)
+++|+.+|.++++|
T Consensus 152 ~~l~~~lG~~v~~c 165 (165)
T d2f1ka2 152 RSVLEPLGVKIYLC 165 (165)
T ss_dssp HHHHGGGTCEEEEC
T ss_pred HHHHHHhCCEEEeC
Confidence 99999999988754
|
| >d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM1727 species: Thermotoga maritima [TaxId: 2336]
Probab=99.79 E-value=1.3e-20 Score=167.32 Aligned_cols=149 Identities=9% Similarity=0.045 Sum_probs=116.4
Q ss_pred EEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHHHH
Q psy9637 7 IGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDDFI 86 (490)
Q Consensus 7 IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~vl 86 (490)
|||||+|+||.+|+.+|.++++.+.+|||++++.+++.+.+.. .+.++.++++. +|+||+|||++ ++.+++
T Consensus 2 IgfIG~G~mg~~l~~~L~~~~~~~~v~~R~~~~~~~l~~~~~~-----~~~~~~~~~~~---~DiVil~v~d~-~i~~v~ 72 (153)
T d2i76a2 2 LNFVGTGTLTRFFLECLKDRYEIGYILSRSIDRARNLAEVYGG-----KAATLEKHPEL---NGVVFVIVPDR-YIKTVA 72 (153)
T ss_dssp CEEESCCHHHHHHHHTTC----CCCEECSSHHHHHHHHHHTCC-----CCCSSCCCCC------CEEECSCTT-THHHHH
T ss_pred EEEEeCcHHHHHHHHHHHhCCCEEEEEeCChhhhcchhhcccc-----cccchhhhhcc---CcEEEEeccch-hhhHHH
Confidence 8999999999999999987666567999999999999987653 35677777766 99999999985 788887
Q ss_pred HhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCCCccccccCC-ccCCCCCcchHHHHHHHHHhhCCce
Q psy9637 87 DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGGEDGARYGP-SLMPGGNPAAWPALKPIFQKLNPSF 165 (490)
Q Consensus 87 ~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg~~~a~~G~-~im~GG~~~a~~~v~~ll~~l~~~~ 165 (490)
.++. .++.+|||++++.+.+..+ .....+++++.+++.++...++.+. .++++||+++++.++++|+.+|.++
T Consensus 73 ~~l~---~~~~ivi~~s~~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~l~~~lG~~~ 146 (153)
T d2i76a2 73 NHLN---LGDAVLVHCSGFLSSEIFK---KSGRASIHPNFSFSSLEKALEMKDQIVFGLEGDERGLPIVKKIAEEISGKY 146 (153)
T ss_dssp TTTC---CSSCCEEECCSSSCGGGGC---SSSEEEEEECSCC--CTTGGGCGGGCCEEECCCTTTHHHHHHHHHHHCSCE
T ss_pred hhhc---ccceeeeecccchhhhhhh---hhccccceeeeecccccchhhhccCcEEEEeCCHHHHHHHHHHHHHHCCcE
Confidence 7663 4789999999988755432 3345678999999988888777666 7889999999999999999999988
Q ss_pred eeCCC
Q psy9637 166 ETSAP 170 (490)
Q Consensus 166 ~~~g~ 170 (490)
+++++
T Consensus 147 ~~i~~ 151 (153)
T d2i76a2 147 FVIPS 151 (153)
T ss_dssp EECCG
T ss_pred EEeCC
Confidence 87653
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=99.77 E-value=8.7e-19 Score=155.33 Aligned_cols=140 Identities=14% Similarity=0.145 Sum_probs=115.1
Q ss_pred CCCcEEEEc-ccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCch
Q psy9637 3 AKGDIGLIG-LAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSA 81 (490)
Q Consensus 3 ~~~~IgiIG-lG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~ 81 (490)
.++||+||| +|.||.+||++|.++||+|.+|||++... .++.++. +|++++++|.. +
T Consensus 8 ~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~~~------------------~~~~~~~---~~~v~~~~~~~-~ 65 (152)
T d2pv7a2 8 DIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWAV------------------AESILAN---ADVVIVSVPIN-L 65 (152)
T ss_dssp TCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGGG------------------HHHHHTT---CSEEEECSCGG-G
T ss_pred CCCeEEEEcCCCHHHHHHHHHHHHcCCCcEecccccccc------------------cchhhhh---ccccccccchh-h
Confidence 357899999 99999999999999999999999985432 2233444 89999999984 8
Q ss_pred HHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccccc-ccCCCCCccccccCC--ccCCCCCcchHHHHHHHH
Q psy9637 82 VDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYV-GCGVSGGEDGARYGP--SLMPGGNPAAWPALKPIF 158 (490)
Q Consensus 82 v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~l-d~~vsGg~~~a~~G~--~im~GG~~~a~~~v~~ll 158 (490)
+..++.++.+.++++.+|+|++|+.+....+..+.+ ..+|+ +.|++|++.++..|+ .++.|++++.+++++++|
T Consensus 66 ~~~v~~~~~~~~~~~~iiiD~~Svk~~~~~~~~~~~---~~~~v~~hP~~Gp~~~~~~g~~~v~~~g~~~~~~~~~~~ll 142 (152)
T d2pv7a2 66 TLETIERLKPYLTENMLLADLTSVKREPLAKMLEVH---TGAVLGLHPMFGADIASMAKQVVVRCDGRFPERYEWLLEQI 142 (152)
T ss_dssp HHHHHHHHGGGCCTTSEEEECCSCCHHHHHHHHHHC---SSEEEEEEECSCTTCSCCTTCEEEEEEEECGGGTHHHHHHH
T ss_pred heeeeecccccccCCceEEEecccCHHHHHHHHHHc---cCCEEEecccCCCcccccCCcEEEEecCCCHHHHHHHHHHH
Confidence 889999999999999999999999877665554432 33565 459999988888888 455688999999999999
Q ss_pred HhhCCceee
Q psy9637 159 QKLNPSFET 167 (490)
Q Consensus 159 ~~l~~~~~~ 167 (490)
+.+|++++.
T Consensus 143 ~~~Ga~v~e 151 (152)
T d2pv7a2 143 QIWGAKIYQ 151 (152)
T ss_dssp HHTTCEEEE
T ss_pred HHhCCEEEe
Confidence 999998764
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=99.72 E-value=5.9e-17 Score=145.88 Aligned_cols=157 Identities=14% Similarity=0.228 Sum_probs=115.6
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC--eEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGF--TVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAV 82 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v 82 (490)
++|+|||+|.||.+||++|.++|+ +|++||++++..+.+.+.+... ...++..+.... .+|+|++|+|. ..+
T Consensus 2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~~---~~~~~~~~~~~~--~~dlIila~p~-~~~ 75 (171)
T d2g5ca2 2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIID---EGTTSIAKVEDF--SPDFVMLSSPV-RTF 75 (171)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCS---EEESCGGGGGGT--CCSEEEECSCH-HHH
T ss_pred CEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcch---hhhhhhhhhhcc--ccccccccCCc-hhh
Confidence 479999999999999999999996 7889999999999888765421 234455444331 38999999998 588
Q ss_pred HHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHc--cccccccCCCCCccccc----cCC-ccCC---CCCcchHH
Q psy9637 83 DDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAK--GLLYVGCGVSGGEDGAR----YGP-SLMP---GGNPAAWP 152 (490)
Q Consensus 83 ~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~--gi~~ld~~vsGg~~~a~----~G~-~im~---GG~~~a~~ 152 (490)
.++++++.+.++++.+|+|.+++.........+.+..+ +.|.+..+...|+..+. .|. .+++ +.+++.++
T Consensus 76 ~~vl~~l~~~~~~~~ii~d~~s~k~~~~~~~~~~~~~~~i~~hPm~G~e~sG~~~a~~~Lf~g~~~il~p~~~~~~~~~~ 155 (171)
T d2g5ca2 76 REIAKKLSYILSEDATVTDQGSVKGKLVYDLENILGKRFVGGHPIAGTEKSGVEYSLDNLYEGKKVILTPTKKTDKKRLK 155 (171)
T ss_dssp HHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGGGEECEEEECCCSCCSGGGCCSSTTTTCEEEECCCSSSCHHHHH
T ss_pred hhhhhhhhccccccccccccccccHHHHHHHHHhhcccccccccccccccccHHHHHHHhhCCCeEEEecCCCCCHHHHH
Confidence 99999999999999999999998866655555544432 33333333333444443 344 3333 34778999
Q ss_pred HHHHHHHhhCCceee
Q psy9637 153 ALKPIFQKLNPSFET 167 (490)
Q Consensus 153 ~v~~ll~~l~~~~~~ 167 (490)
.++++|+.+|+++..
T Consensus 156 ~v~~~~~~lG~~v~~ 170 (171)
T d2g5ca2 156 LVKRVWEDVGGVVEY 170 (171)
T ss_dssp HHHHHHHHTTCEEEE
T ss_pred HHHHHHHHcCCEEEe
Confidence 999999999998764
|
| >d3cuma1 a.100.1.1 (A:163-296) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.61 E-value=1.7e-15 Score=131.26 Aligned_cols=127 Identities=13% Similarity=0.017 Sum_probs=110.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhcccchhhHhHhHhHHhhcc-CcccccccCChh
Q psy9637 178 KKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGGCIIRSVFLGNIKAAFDK-NPALSNLLLDPF 256 (490)
Q Consensus 178 ~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~~~v~~i~~~g~~~~s~~l~~i~~~~~~-~~~~~~~~~~~~ 256 (490)
.++.+|+++|++.++++.+++|++.+++++ |+|+++++++++.++ ++|++++.......+ ...+.+..+.+.
T Consensus 4 sG~~~Kl~~N~l~~~~~~a~aEal~la~~~------Gld~~~~~eil~~~~-g~s~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (134)
T d3cuma1 4 AGQVAKVCNNQLLAVLMIGTAEAMALGVAN------GLEAKVLAEIMRRSS-GGNWALEVYNPWPGVMENAPASRDYSGG 76 (134)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------TCCHHHHHHHHHTST-TCCHHHHHCCCSTTSSTTSGGGGTTCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CCCHHHHHHHHHhcc-cchhhhhhhhhhhhccchhhhcCCCCCC
Confidence 578999999999999999999999999999 999999999999887 788888774332222 223555667777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhCCChhhhHHHHHHhhc
Q psy9637 257 FKDAIHATQSSWRAVVSQSALLGIPTPAFATALAFYDGYRSKRLPANLLQAQRDYFG 313 (490)
Q Consensus 257 f~~~l~~~~kDl~~~~~~A~~~gv~~P~~~aa~~~~~~~~~~g~~~~~~~a~rd~fg 313 (490)
| .+..+.||++++.+.|++.|+|+|+++.+.++|+.+.+.|+++.|..++.++|-
T Consensus 77 f--~~~l~~KDl~l~~~~a~~~g~~~p~~~~a~~~~~~a~~~G~g~~D~s~i~~~~e 131 (134)
T d3cuma1 77 F--MAQLMAKDLGLAQEAAQASASSTPMGSLALSLYRLLLKQGYAERDFSVVQKLFD 131 (134)
T ss_dssp S--BHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHTTCTTSBGGGGHHHHC
T ss_pred c--chHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHcCCCCCCHHHHHHHHc
Confidence 7 688899999999999999999999999999999999999999999998888764
|
| >d1vpda1 a.100.1.1 (A:164-296) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=99.61 E-value=1.4e-15 Score=131.48 Aligned_cols=121 Identities=18% Similarity=0.199 Sum_probs=109.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhcccchhhHhHhHhHHhhccCcccccccCChhH
Q psy9637 178 KKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGGCIIRSVFLGNIKAAFDKNPALSNLLLDPFF 257 (490)
Q Consensus 178 ~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~~~v~~i~~~g~~~~s~~l~~i~~~~~~~~~~~~~~~~~~f 257 (490)
.++.+|+++|++.++++.+++|++.+++++ |||+++++++++.++ .+|++++.. .|.+.+..|.|.|
T Consensus 4 ~g~~~Kl~nN~l~~~~~~~~aEal~la~~~------Gid~~~~~~~l~~~~-~~S~~~~~~------~~~~~~~~~~~~f 70 (133)
T d1vpda1 4 AGNVTKLANQVIVALNIAAMSEALTLATKA------GVNPDLVYQAIRGGL-AGSTVLDAK------APMVMDRNFKPGF 70 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------TCCHHHHHHHHTTST-TCCHHHHHH------HHHHHTTCCCCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCHHHHHHHHHhcc-ccchhhhhc------cchhhhccCCCCc
Confidence 578999999999999999999999999999 999999999999876 567777763 2456677788887
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhCCChhhhHHHHHHhhc
Q psy9637 258 KDAIHATQSSWRAVVSQSALLGIPTPAFATALAFYDGYRSKRLPANLLQAQRDYFG 313 (490)
Q Consensus 258 ~~~l~~~~kDl~~~~~~A~~~gv~~P~~~aa~~~~~~~~~~g~~~~~~~a~rd~fg 313 (490)
++..+.||++++.++|++.|+|+|+.+.+.++|+.+.+.|+++.|.+++.++|.
T Consensus 71 --~~~l~~KDl~l~~~~a~~~~~~~p~~~~~~~~~~~a~~~G~~~~D~s~i~~~~~ 124 (133)
T d1vpda1 71 --RIDLHIKDLANALDTSHGVGAQLPLTAAVMEMMQALRADGHGNDDHSALACYYE 124 (133)
T ss_dssp --BHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHTTCTTSBGGGHHHHHH
T ss_pred --hHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 588899999999999999999999999999999999999999999998887764
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.54 E-value=1.4e-14 Score=127.99 Aligned_cols=144 Identities=13% Similarity=0.158 Sum_probs=102.4
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
|||||||+|+||.+|+.+|.++|++|++|+|++++.+++.++.. +..+.+++++++. +|+||+||++ +.+++
T Consensus 1 MkIg~IG~G~mG~al~~~l~~~~~~i~v~~r~~~~~~~l~~~~g----~~~~~~~~~~~~~---~dvIilavkp-~~~~~ 72 (152)
T d2ahra2 1 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLA----LPYAMSHQDLIDQ---VDLVILGIKP-QLFET 72 (152)
T ss_dssp CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHHT----CCBCSSHHHHHHT---CSEEEECSCG-GGHHH
T ss_pred CEEEEEeccHHHHHHHHHHHhCCCeEEEEcChHHhHHhhccccc----eeeechhhhhhhc---cceeeeecch-HhHHH
Confidence 58999999999999999999999999999999999998876532 2367899999987 9999999987 46766
Q ss_pred HHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccccccc-CCCCCccccccCCc-cCCC--CCcchHHHHHHHHHh
Q psy9637 85 FIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGC-GVSGGEDGARYGPS-LMPG--GNPAAWPALKPIFQK 160 (490)
Q Consensus 85 vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~-~vsGg~~~a~~G~~-im~G--G~~~a~~~v~~ll~~ 160 (490)
++. .+.++++||+..+.... ..+.+.+ ..+..++.+ |-.. .....|.+ +..+ .+++..+.++++|+.
T Consensus 73 vl~----~l~~~~~iis~~agi~~--~~l~~~l-~~~~~ivr~mPN~~--~~v~~g~~~~~~~~~~~~~~~~~v~~l~~~ 143 (152)
T d2ahra2 73 VLK----PLHFKQPIISMAAGISL--QRLATFV-GQDLPLLRIMPNMN--AQILQSSTALTGNALVSQELQARVRDLTDS 143 (152)
T ss_dssp HHT----TSCCCSCEEECCTTCCH--HHHHHHH-CTTSCEEEEECCGG--GGGTCEEEEEEECTTCCHHHHHHHHHHHHT
T ss_pred Hhh----hcccceeEecccccccH--HHHHhhh-cccccchhhccchh--hhcCccceEEEeCCCCCHHHHHHHHHHHHh
Confidence 654 46778999988776532 2233333 223334322 3211 11123332 2222 257899999999999
Q ss_pred hCCce
Q psy9637 161 LNPSF 165 (490)
Q Consensus 161 l~~~~ 165 (490)
+|..+
T Consensus 144 ~G~~~ 148 (152)
T d2ahra2 144 FGSTF 148 (152)
T ss_dssp TEEEE
T ss_pred CCCEE
Confidence 98643
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.54 E-value=3.4e-14 Score=131.40 Aligned_cols=159 Identities=14% Similarity=0.181 Sum_probs=114.9
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccC---------------CCCeeccCCHHHHHhhCCCC
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAK---------------GTNIIGAHSLEELVKNLKKP 69 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~---------------~~~i~~~~s~~e~v~~l~~~ 69 (490)
|||+|||+|.+|.++|..|+++||+|++||.++++++.+.+.... ..++...++..+++.. +
T Consensus 1 MkI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~~~i~~ln~g~~p~~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~---~ 77 (202)
T d1mv8a2 1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLD---S 77 (202)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHT---C
T ss_pred CEEEEECCCHhHHHHHHHHHhCCCcEEEEeCCHHHHHHhcccCCcccchhhhhhhhhhhcccccccCCCHHHHHhh---C
Confidence 689999999999999999999999999999999999887642211 2345678889998887 9
Q ss_pred cEEEEecCCCc---------hHHHHHHhh---cccCCCCCEEEcCCCCChHHHHHHHHHHHHc--cc-cccccCCCCCcc
Q psy9637 70 RRVMMLVKAGS---------AVDDFIDKL---VPLLEKGDIIIDGGNSEYQDTDRRSKALEAK--GL-LYVGCGVSGGED 134 (490)
Q Consensus 70 dvIil~vp~~~---------~v~~vl~~l---~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~--gi-~~ld~~vsGg~~ 134 (490)
|+|++|||++. .+..+++.+ .....++++||..||+.|..+.+....+.++ +. ...|..+.-.|+
T Consensus 78 d~i~i~VpTP~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~liii~STv~pGtt~~~~~~~l~~~~~~~~~~~~~~~~~PE 157 (202)
T d1mv8a2 78 DVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDFGVGTNPE 157 (202)
T ss_dssp SEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHHHHSCCBTTTBEEEECCC
T ss_pred CEEEEecCccccccccccchhhhhhhhhhhheeecccCCcceeeccccCCcchhhhhhhhhhccccccccccccchhhhh
Confidence 99999999852 244555443 4456688999999999999999887554322 11 111222223334
Q ss_pred ccccCC---------ccCCCC-CcchHHHHHHHHHhhCCcee
Q psy9637 135 GARYGP---------SLMPGG-NPAAWPALKPIFQKLNPSFE 166 (490)
Q Consensus 135 ~a~~G~---------~im~GG-~~~a~~~v~~ll~~l~~~~~ 166 (490)
....|. .+++|| +++..+.++.+++.+..+++
T Consensus 158 ~~~~G~a~~d~~~~~~iViG~~~~~~~~~~~~ly~~i~~~ii 199 (202)
T d1mv8a2 158 FLRESTAIKDYDFPPMTVIGELDKQTGDLLEEIYRELDAPII 199 (202)
T ss_dssp CCCTTSHHHHHHSCSCEEEEESSHHHHHHHHHHHTTSSSCEE
T ss_pred hhcccchhhhhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeE
Confidence 444443 356676 56788899999998876654
|
| >d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]
Probab=99.52 E-value=2.5e-15 Score=141.97 Aligned_cols=158 Identities=13% Similarity=0.035 Sum_probs=127.6
Q ss_pred cEEEEcccH--HHHHHHH------HHHHCCCeEEEEeCChHHH-HHHHHcccC---------------C-----------
Q psy9637 6 DIGLIGLAV--MGQNLIL------NMNDHGFTVVAYNRTTAKV-DSFLANEAK---------------G----------- 50 (490)
Q Consensus 6 ~IgiIGlG~--MG~~lA~------~L~~~G~~V~v~dr~~~~~-~~l~~~g~~---------------~----------- 50 (490)
+++++|.|. ||..++. +|++.|+.|++.|.+++++ +.+.+.... .
T Consensus 42 ~~~~~gagl~~~~~gi~~v~vs~~~fa~~g~~v~~~d~d~~~v~~~~~~g~~~i~~p~l~~~v~~~~~~~~~~~~~~~~~ 121 (242)
T d2b0ja2 42 SSITYGAELLHLVPDVKEVIVSDPCFAEEPGLVVIDEFDPKEVMEAHLSGNPESIMPKIREVVKAKAKELPKPPKACIHL 121 (242)
T ss_dssp HHHHHHHHHHHHCTTCCEEEEECGGGGSSSEEEECCCSCHHHHHHHHHTTCGGGTHHHHHHHHHHHHHTSCCTTTEEEES
T ss_pred eeeeeeecHHhhhhchhhhhccchhhhhcCCeEEEEeCCHHHHHHHHhcCCchhhcchHHHHHHHHHHhccCCccchhhc
Confidence 477888886 8877877 7899999999999998764 333221100 0
Q ss_pred -----CCeeccCCHHHHHhhCCCCcEEEEecCCCchHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccccc
Q psy9637 51 -----TNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYV 125 (490)
Q Consensus 51 -----~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~l 125 (490)
..++.++|+.|++++ +|+||+|||.+..+.++++++.+.+++|.+|+|+||+.+..+.++.+.+.+++++|+
T Consensus 122 ~~pEe~Gv~v~~d~~Eav~~---ADiII~~vP~~~~v~~Vi~~I~~~l~~g~Iiid~STi~~~~~~~l~e~l~~kgi~vi 198 (242)
T d2b0ja2 122 VHPEDVGLKVTSDDREAVEG---ADIVITWLPKGNKQPDIIKKFADAIPEGAIVTHACTIPTTKFAKIFKDLGREDLNIT 198 (242)
T ss_dssp SCGGGGTCEEESCHHHHHTT---CSEEEECCTTCTTHHHHHHHHGGGSCTTCEEEECSSSCHHHHHHHHHHTTCTTSEEE
T ss_pred CCHHHCCCEEECCHHHHHhc---CCeEEEeeecHHHHHHHHHHHHhhCCCCcEEEecCCCcHHHHHHHHHhcccCCCEEE
Confidence 124567999999988 999999999988899999999999999999999999999999999899999999999
Q ss_pred ccCCCCCccccccCC-ccCCCCCcchHHHHHHHHHhhCCceee
Q psy9637 126 GCGVSGGEDGARYGP-SLMPGGNPAAWPALKPIFQKLNPSFET 167 (490)
Q Consensus 126 d~~vsGg~~~a~~G~-~im~GG~~~a~~~v~~ll~~l~~~~~~ 167 (490)
+.+..+++. ...+. .++.+++++.++++.++|+.+|.+.+.
T Consensus 199 ~~hp~a~pe-~~g~~li~~~~aseE~iekv~elles~Gk~~~v 240 (242)
T d2b0ja2 199 SYHPGCVPE-MKGQVYIAEGYASEEAVNKLYEIGKIARGKAFK 240 (242)
T ss_dssp ECBCSSCTT-TCCCEEEEESSSCHHHHHHHHHHHHHHHSCEEE
T ss_pred CCCccCcCc-cccceEEecCCCCHHHHHHHHHHHHHHCCCeEe
Confidence 887766654 33333 667788999999999999999987654
|
| >d2cvza1 a.100.1.1 (A:158-289) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=99.51 E-value=1.7e-14 Score=124.50 Aligned_cols=121 Identities=12% Similarity=0.074 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhcccchhhHhHhHhHHhhccCcccccccCChhH
Q psy9637 178 KKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGGCIIRSVFLGNIKAAFDKNPALSNLLLDPFF 257 (490)
Q Consensus 178 ~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~~~v~~i~~~g~~~~s~~l~~i~~~~~~~~~~~~~~~~~~f 257 (490)
.++.+|+++|++.++++.+++|++.++++. |||+++++++++.++ .+|+.++..... .+.+..++|.|
T Consensus 3 ~g~~~Kl~nN~l~~~~~~~~aEal~la~~~------Gld~~~~~~vl~~s~-~~s~~~~~~~p~-----~~~~~~~~~~f 70 (132)
T d2cvza1 3 AGHAVKAINNALLAVNLWAAGEGLLALVKQ------GVSAEKALEVINASS-GRSNATENLIPQ-----RVLTRAFPKTF 70 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------TCCHHHHHHHHTTST-TCBHHHHHTHHH-----HTTTSCCCCSS
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCHHHHHHHHHhhh-hhhhhhhhhhhH-----HHHHHhhhhhh
Confidence 578999999999999999999999999999 999999999998876 456666542110 24456677777
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhCCChhhhHHHHHHhh
Q psy9637 258 KDAIHATQSSWRAVVSQSALLGIPTPAFATALAFYDGYRSKRLPANLLQAQRDYF 312 (490)
Q Consensus 258 ~~~l~~~~kDl~~~~~~A~~~gv~~P~~~aa~~~~~~~~~~g~~~~~~~a~rd~f 312 (490)
+++.+.||++++.+.|++.|+|+|+.+.+.++|+.+...|+++.|..++.+++
T Consensus 71 --~~~~~~KDl~l~~~~a~~~g~~~pl~~~~~~~~~~a~~~g~~~~D~s~i~~~~ 123 (132)
T d2cvza1 71 --ALGLLVKDLGIAMGVLDGEKAPSPLLRLAREVYEMAKRELGPDADHVEALRLL 123 (132)
T ss_dssp --BHHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHCTTSBGGGGHHHH
T ss_pred --HHHHHhhHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Confidence 67899999999999999999999999999999999999999988777766654
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=99.46 E-value=4.2e-14 Score=124.79 Aligned_cols=145 Identities=12% Similarity=0.156 Sum_probs=99.5
Q ss_pred CcEEEEcccHHHHHHHHHHHHCC-CeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHG-FTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G-~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
|||||||+|+||.+|+.+|.++| ++|.+|||++++.+.+.++.. +...++.+++ . ++|+||+||++ +.+.
T Consensus 1 MkI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~~~~----~~~~~~~~~v-~---~~Div~lavkP-~~~~ 71 (152)
T d1yqga2 1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELG----VETSATLPEL-H---SDDVLILAVKP-QDME 71 (152)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTC----CEEESSCCCC-C---TTSEEEECSCH-HHHH
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCChhHHHHhhhhcc----cccccccccc-c---ccceEEEecCH-HHHH
Confidence 58999999999999999999887 999999999999999887642 2345565553 3 38999999986 5788
Q ss_pred HHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCCCccccccCC-ccCCC--CCcchHHHHHHHHHh
Q psy9637 84 DFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGGEDGARYGP-SLMPG--GNPAAWPALKPIFQK 160 (490)
Q Consensus 84 ~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg~~~a~~G~-~im~G--G~~~a~~~v~~ll~~ 160 (490)
++++++.+ .+.+||+...+.+... +.+.+. ...+.+-+ +...+.....|. .+..+ .+++..+.++++|+.
T Consensus 72 ~v~~~l~~---~~~~viS~~ag~~~~~--l~~~l~-~~~~iir~-mpn~p~~~~~g~t~~~~~~~~~~~~~~~v~~l~~~ 144 (152)
T d1yqga2 72 AACKNIRT---NGALVLSVAAGLSVGT--LSRYLG-GTRRIVRV-MPNTPGKIGLGVSGMYAEAEVSETDRRIADRIMKS 144 (152)
T ss_dssp HHHTTCCC---TTCEEEECCTTCCHHH--HHHHTT-SCCCEEEE-ECCGGGGGTCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred HhHHHHhh---cccEEeecccCCCHHH--HHHHhC-cCcceEee-cccchhHhcCCcEEEEeCCCCCHHHHHHHHHHHHh
Confidence 88777653 5789998877654332 223222 22222211 112223334555 33333 256788999999999
Q ss_pred hCCce
Q psy9637 161 LNPSF 165 (490)
Q Consensus 161 l~~~~ 165 (490)
+|..+
T Consensus 145 ~G~~~ 149 (152)
T d1yqga2 145 VGLTV 149 (152)
T ss_dssp TEEEE
T ss_pred CCCEE
Confidence 98643
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=99.42 E-value=6.6e-13 Score=119.70 Aligned_cols=112 Identities=15% Similarity=0.214 Sum_probs=89.5
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccC----------CCCeeccCCHHHHHhhCCCCcEEEE
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAK----------GTNIIGAHSLEELVKNLKKPRRVMM 74 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~----------~~~i~~~~s~~e~v~~l~~~dvIil 74 (490)
+||+|||+|.||..+|..|+++||+|.+|||++++.+.+.+.+.. .......+++.|.++. +|+||+
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~---aD~iii 78 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKD---ADVILI 78 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTT---CSEEEE
T ss_pred CEEEEECccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcC---CCEEEE
Confidence 589999999999999999999999999999999999988765432 0122345778888887 999999
Q ss_pred ecCCCchHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcc
Q psy9637 75 LVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKG 121 (490)
Q Consensus 75 ~vp~~~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~g 121 (490)
++|+. .++.+++++.+++.++.+|+..++... .+.+..+.+...+
T Consensus 79 ~v~~~-~~~~~~~~i~~~l~~~~~iv~~~g~~~-~~~~~~~~~~~~~ 123 (184)
T d1bg6a2 79 VVPAI-HHASIAANIASYISEGQLIILNPGATG-GALEFRKILRENG 123 (184)
T ss_dssp CSCGG-GHHHHHHHHGGGCCTTCEEEESSCCSS-HHHHHHHHHHHTT
T ss_pred EEchh-HHHHHHHHhhhccCCCCEEEEeCCCCc-cHHHHHHHHHHhc
Confidence 99995 899999999999999999987766543 3444445555443
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=99.41 E-value=7.4e-14 Score=127.79 Aligned_cols=153 Identities=12% Similarity=0.065 Sum_probs=110.0
Q ss_pred CCCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccC---------CCCeeccCCHHHHHhhCCCCcEEE
Q psy9637 3 AKGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAK---------GTNIIGAHSLEELVKNLKKPRRVM 73 (490)
Q Consensus 3 ~~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~---------~~~i~~~~s~~e~v~~l~~~dvIi 73 (490)
.|+||+|||.|.||.++|..|+++||+|++|+|+++.++.+.+.+.+ ..++..+++++++++. +|+|+
T Consensus 6 ~m~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~~~~~~i~~~~~n~~yl~~~~l~~~i~~t~~l~~a~~~---ad~ii 82 (189)
T d1n1ea2 6 YLNKAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNG---AEIIL 82 (189)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTT---CSCEE
T ss_pred eeceEEEECCCHHHHHHHHHHHHcCCeEEEEEecHHHHHHHhhcccccccccccccccccccchhhhhccCC---CCEEE
Confidence 45689999999999999999999999999999999999988765432 3467788999999887 89999
Q ss_pred EecCCCchHHHHHHhhccc-----CCCCCEEEcCCCCChHHHHHHH-HHHHHccccccccCCCCCcccc----ccCC-cc
Q psy9637 74 MLVKAGSAVDDFIDKLVPL-----LEKGDIIIDGGNSEYQDTDRRS-KALEAKGLLYVGCGVSGGEDGA----RYGP-SL 142 (490)
Q Consensus 74 l~vp~~~~v~~vl~~l~~~-----l~~g~iiId~s~~~~~~~~~~~-~~l~~~gi~~ld~~vsGg~~~a----~~G~-~i 142 (490)
++||. ..++++++++.+. +.++..||.++.+....+..+. +.+.+. +.--...+..||.-| +.-+ ++
T Consensus 83 iavPs-~~~~~~~~~~~~~~~~~~~~~~~~ii~~tKGie~~t~~~~seii~e~-~~~~~~~vlsGP~~A~Ev~~~~pt~~ 160 (189)
T d1n1ea2 83 FVIPT-QFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIERSTLKFPAEIIGEF-LPSPLLSVLAGPSFAIEVATGVFTCV 160 (189)
T ss_dssp ECSCH-HHHHHHHHHHCHHHHHHHHHHTCCEEECCCSCCTTTCCCHHHHHTTT-SCGGGEEEEESSCCHHHHHTTCCEEE
T ss_pred EcCcH-HHHHHHHHHHHhhhhhhhccCCcEEEEEECCCccCCccchhhHHHHH-hcccceEEEecCCcHHHHHcCCCcEE
Confidence 99998 5889999887753 4567778888877654444333 333322 111112333455443 2333 44
Q ss_pred CCC-CCcchHHHHHHHHHh
Q psy9637 143 MPG-GNPAAWPALKPIFQK 160 (490)
Q Consensus 143 m~G-G~~~a~~~v~~ll~~ 160 (490)
.++ -+.+..+.++++|+.
T Consensus 161 viAs~~~~~a~~i~~lfst 179 (189)
T d1n1ea2 161 SIASADINVARRLQRIMST 179 (189)
T ss_dssp EEECSSHHHHHHHHHHHSC
T ss_pred EEEeCCHHHHHHHHHHhCC
Confidence 444 466778888888874
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.33 E-value=8.8e-13 Score=119.52 Aligned_cols=151 Identities=21% Similarity=0.230 Sum_probs=99.5
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeC--ChHHHHHHHHcccC--------CCCeeccCCHHHHHhhCCCCcEEEE
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNR--TTAKVDSFLANEAK--------GTNIIGAHSLEELVKNLKKPRRVMM 74 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr--~~~~~~~l~~~g~~--------~~~i~~~~s~~e~v~~l~~~dvIil 74 (490)
|||+|||+|.||.++|..|+++||+|.+|.| +++.++.+.+.... ..++...+++.++++. +|+|++
T Consensus 1 MkI~ViGaG~~GtalA~~la~~g~~V~l~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---ad~Ii~ 77 (180)
T d1txga2 1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLEN---AEVVLL 77 (180)
T ss_dssp CEEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTT---CSEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEEecccHHHHHHHhhhhhhhhhcchhccccccccccHHHHHhc---cchhhc
Confidence 6899999999999999999999999999988 45556666543221 1234556788888877 999999
Q ss_pred ecCCCchHHHHHHhhcccCCCCCEEEcCCCCChHHH--HHHHHHHHHc-cccccccCCCCCccccc----cCC--ccCCC
Q psy9637 75 LVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDT--DRRSKALEAK-GLLYVGCGVSGGEDGAR----YGP--SLMPG 145 (490)
Q Consensus 75 ~vp~~~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~--~~~~~~l~~~-gi~~ld~~vsGg~~~a~----~G~--~im~G 145 (490)
+||. ..++++++++.+++++..+|+-+....+.+. ....+.+.+. +...-...+..||.-|. .-+ ..+.+
T Consensus 78 avps-~~~~~~~~~l~~~l~~~~ii~~tkg~~~~~~~~~~~~~~~~~~~~~~~~~~~vlsGP~~A~Ei~~~~pt~~vias 156 (180)
T d1txga2 78 GVST-DGVLPVMSRILPYLKDQYIVLISKGLIDFDNSVLTVPEAVWRLKHDLRERTVAITGPAIAREVAKRMPTTVVFSS 156 (180)
T ss_dssp CSCG-GGHHHHHHHHTTTCCSCEEEECCCSEEEETTEEEEHHHHHHTTSTTCGGGEEEEESSCCHHHHHTTCCEEEEEEC
T ss_pred ccch-hhhHHHHHhhccccccceecccccCccccccccccchHHHHhhhcccccceeEEcCCccHHHHHcCCCcEEEEEc
Confidence 9998 5999999999999976555544333221111 1112233221 22222334455665543 233 34445
Q ss_pred CCcchHHHHHHHHH
Q psy9637 146 GNPAAWPALKPIFQ 159 (490)
Q Consensus 146 G~~~a~~~v~~ll~ 159 (490)
.+.+..+.++++|+
T Consensus 157 ~~~~~a~~i~~~f~ 170 (180)
T d1txga2 157 PSESSANKMKEIFE 170 (180)
T ss_dssp SCHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHC
Confidence 56677888888886
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.33 E-value=3.6e-12 Score=116.66 Aligned_cols=155 Identities=14% Similarity=0.112 Sum_probs=107.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHc-----------ccC-------------CCCeeccCCH
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLAN-----------EAK-------------GTNIIGAHSL 59 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~-----------g~~-------------~~~i~~~~s~ 59 (490)
.+||+|||+|.||..+|..++.+||+|++||++++.++...+. +.. -.++..++++
T Consensus 4 IkkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~d~ 83 (192)
T d1f0ya2 4 VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTDA 83 (192)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESCH
T ss_pred eEEEEEECcCHHHHHHHHHHHhCCCcEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhccccchh
Confidence 4689999999999999999999999999999999876643321 110 0235567777
Q ss_pred HHHHhhCCCCcEEEEecCCCchHH-HHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHH----ccccccccCCCCCcc
Q psy9637 60 EELVKNLKKPRRVMMLVKAGSAVD-DFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEA----KGLLYVGCGVSGGED 134 (490)
Q Consensus 60 ~e~v~~l~~~dvIil~vp~~~~v~-~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~----~gi~~ld~~vsGg~~ 134 (490)
.+.+.+ +|+|+-++|.+..++ +++.++.+..+++.++...+++.+.. ++.+.+.. -|.||..-|-.-..-
T Consensus 84 ~~a~~~---ad~ViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~--~la~~~~~p~r~ig~HffnP~~~~~lV 158 (192)
T d1f0ya2 84 ASVVHS---TDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQIT--SIANATTRQDRFAGLHFFNPVPVMKLV 158 (192)
T ss_dssp HHHTTS---CSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSSCHH--HHHTTSSCGGGEEEEEECSSTTTCCEE
T ss_pred Hhhhcc---cceehhhcccchhHHHHHHHHHhhhcccCceeeccCcccccc--hhhhhccCHhHEEeeccccccCcccEE
Confidence 776665 999999999987776 56688888888888877666655432 23322221 267776544111110
Q ss_pred ccccCCccCCC--CCcchHHHHHHHHHhhCCceeeCC
Q psy9637 135 GARYGPSLMPG--GNPAAWPALKPIFQKLNPSFETSA 169 (490)
Q Consensus 135 ~a~~G~~im~G--G~~~a~~~v~~ll~~l~~~~~~~g 169 (490)
=++.| -+++.++.+..+++.++...+.+.
T Consensus 159 ------EIv~g~~T~~~~i~~~~~~~~~lgk~pV~v~ 189 (192)
T d1f0ya2 159 ------EVIKTPMTSQKTFESLVDFSKALGKHPVSCK 189 (192)
T ss_dssp ------EEECCTTCCHHHHHHHHHHHHHTTCEEEEEC
T ss_pred ------EEcCCCCCCHHHHHHHHHHHHHcCCEEEEee
Confidence 12222 367899999999999998766543
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=99.21 E-value=1.1e-11 Score=112.66 Aligned_cols=153 Identities=14% Similarity=0.120 Sum_probs=103.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHccc-----------C--------CCCeeccCCHHHHHh
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEA-----------K--------GTNIIGAHSLEELVK 64 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~-----------~--------~~~i~~~~s~~e~v~ 64 (490)
.+||+|||+|.||..+|..++.+||+|++||++++.+++..+... . ..++....+.+++ .
T Consensus 4 I~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~ 82 (186)
T d1wdka3 4 VKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSYGDF-G 82 (186)
T ss_dssp CSSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSSTTG-G
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeecccccccc-c
Confidence 468999999999999999999999999999999987765433210 0 0123344444443 3
Q ss_pred hCCCCcEEEEecCCCchHH-HHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHH----ccccccccCCCCCccccccC
Q psy9637 65 NLKKPRRVMMLVKAGSAVD-DFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEA----KGLLYVGCGVSGGEDGARYG 139 (490)
Q Consensus 65 ~l~~~dvIil~vp~~~~v~-~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~----~gi~~ld~~vsGg~~~a~~G 139 (490)
+ +|+|+-++|....++ +++.+|.+..+++.||...+++.+.. ++.+.+.. -|.||...|-.-.--
T Consensus 83 ~---adlViEav~E~l~~K~~lf~~l~~~~~~~~IiaSnTS~l~i~--~la~~~~~p~r~~g~Hf~nP~~~~~lV----- 152 (186)
T d1wdka3 83 N---VDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTISIS--LLAKALKRPENFVGMHFFNPVHMMPLV----- 152 (186)
T ss_dssp G---CSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHH--HHGGGCSCGGGEEEEECCSSTTTCCEE-----
T ss_pred c---cceeeeeecchHHHHHHHHHHHHhhcCCCeeEEeccccccHH--HHHHhccCchheEeeccccCcccCCeE-----
Confidence 3 899999999987776 46688888888888887776665433 23322221 166665543111000
Q ss_pred CccCCC--CCcchHHHHHHHHHhhCCceeeC
Q psy9637 140 PSLMPG--GNPAAWPALKPIFQKLNPSFETS 168 (490)
Q Consensus 140 ~~im~G--G~~~a~~~v~~ll~~l~~~~~~~ 168 (490)
=++.| -+++.++.+..+++.++...+.+
T Consensus 153 -Eiv~~~~T~~~~~~~~~~~~~~lgk~pv~v 182 (186)
T d1wdka3 153 -EVIRGEKSSDLAVATTVAYAKKMGKNPIVV 182 (186)
T ss_dssp -EEEECSSCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred -EECCCCCCCHHHHHHHHHHHHHcCCEEEEE
Confidence 12222 36789999999999999876654
|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.16 E-value=1.4e-10 Score=105.77 Aligned_cols=143 Identities=12% Similarity=0.122 Sum_probs=95.7
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccC-------------CCCeeccCCHHHHHhhCCCCcE
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAK-------------GTNIIGAHSLEELVKNLKKPRR 71 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~-------------~~~i~~~~s~~e~v~~l~~~dv 71 (490)
|||+|||+|.+|.++|..|+ .||+|++||.++++++.+...... ..++....+....... +|+
T Consensus 1 MkI~ViGlG~vGl~~a~~~a-~g~~V~g~Din~~~v~~l~~g~~p~~e~~l~~~~~~~~~~~~~~~~~~~~~~~---~~i 76 (196)
T d1dlja2 1 MKIAVAGSGYVGLSLGVLLS-LQNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYKE---AEL 76 (196)
T ss_dssp CEEEEECCSHHHHHHHHHHT-TTSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHHH---CSE
T ss_pred CEEEEECCChhHHHHHHHHH-CCCcEEEEECCHHHHHHHhhcccccchhhHHHHhhhhhhhhhccchhhhhhhc---ccc
Confidence 68999999999999998886 699999999999999887642110 1233344555555555 899
Q ss_pred EEEecCCCch----------HHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCCCccccccCC-
Q psy9637 72 VMMLVKAGSA----------VDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGGEDGARYGP- 140 (490)
Q Consensus 72 Iil~vp~~~~----------v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg~~~a~~G~- 140 (490)
|++|+|.+.. ++.+.+.+.. ..++.+||-.||..|.++.+..+.+....+.| + |+....|.
T Consensus 77 i~v~vpt~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~iii~Stv~pgt~~~~~~~~~~~~~~~--~-----PE~i~~G~a 148 (196)
T d1dlja2 77 VIIATPTNYNSRINYFDTQHVETVIKEVLS-VNSHATLIIKSTIPIGFITEMRQKFQTDRIIF--S-----PEFLRESKA 148 (196)
T ss_dssp EEECCCCCEETTTTEECCHHHHHHHHHHHH-HCSSCEEEECSCCCTTHHHHHHHHTTCSCEEE--C-----CCCCCTTST
T ss_pred ccccCCccccccCCCcceeEEeehhhhhhh-cccceeEEeeeecCceeeeeeeeccchhhhcc--c-----hhhcchhhh
Confidence 9999998742 2333344443 35788999999999988887766554443332 3 34444443
Q ss_pred --------ccCCCCCcchHHHHHHHHH
Q psy9637 141 --------SLMPGGNPAAWPALKPIFQ 159 (490)
Q Consensus 141 --------~im~GG~~~a~~~v~~ll~ 159 (490)
-+++|++++...+++..++
T Consensus 149 i~d~~~p~riv~G~~~~~~~~~~~~~~ 175 (196)
T d1dlja2 149 LYDNLYPSRIIVSCEENDSPKVKADAE 175 (196)
T ss_dssp THHHHSCSCEEEECCTTSCHHHHHHHH
T ss_pred HhhccCCCEEEEeCCHhhHHHHHHHHH
Confidence 3567777665554444443
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=99.11 E-value=1.4e-11 Score=108.91 Aligned_cols=99 Identities=19% Similarity=0.173 Sum_probs=75.9
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCC--CeeccCCHHHHHhhCCCCcEEEEecCCCchH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGT--NIIGAHSLEELVKNLKKPRRVMMLVKAGSAV 82 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~--~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v 82 (490)
|||+|||+|.||..+|..|+++||+|++++|++++.+.....+.... ......+..+.... +|+||++||+. ++
T Consensus 1 MkI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~D~iii~vka~-~~ 76 (167)
T d1ks9a2 1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTANDPDFLAT---SDLLLVTLKAW-QV 76 (167)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEEEEEECTTSCEEEEEEEESCHHHHHT---CSEEEECSCGG-GH
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCceEEEEcCHHHhhhhccccCCccccccccccchhhhhcc---cceEEEeeccc-ch
Confidence 69999999999999999999999999999999875443322221111 01122333344444 89999999994 89
Q ss_pred HHHHHhhcccCCCCCEEEcCCCCCh
Q psy9637 83 DDFIDKLVPLLEKGDIIIDGGNSEY 107 (490)
Q Consensus 83 ~~vl~~l~~~l~~g~iiId~s~~~~ 107 (490)
+++++.+.+.+.++.+|+.+.|+..
T Consensus 77 ~~~~~~l~~~~~~~~~Iv~~qNG~~ 101 (167)
T d1ks9a2 77 SDAVKSLASTLPVTTPILLIHNGMG 101 (167)
T ss_dssp HHHHHHHHTTSCTTSCEEEECSSSC
T ss_pred HHHHHhhccccCcccEEeeccCccc
Confidence 9999999999999999999998763
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=98.87 E-value=2.2e-09 Score=96.73 Aligned_cols=105 Identities=17% Similarity=0.290 Sum_probs=88.1
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
++|||||+|.+|..+|+.+..-|.+|.+|||++.. + ......++++++.. +|+|++++|..+.++.
T Consensus 43 k~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~~~-------~----~~~~~~~l~ell~~---sDiv~~~~pl~~~t~~ 108 (181)
T d1qp8a1 43 EKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPKE-------G----PWRFTNSLEEALRE---ARAAVCALPLNKHTRG 108 (181)
T ss_dssp CEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCCC-------S----SSCCBSCSHHHHTT---CSEEEECCCCSTTTTT
T ss_pred ceEEEeccccccccceeeeeccccccccccccccc-------c----ceeeeechhhhhhc---cchhhccccccccccc
Confidence 57999999999999999999999999999998531 1 11246789998887 9999999999988887
Q ss_pred HH-HhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccc
Q psy9637 85 FI-DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLL 123 (490)
Q Consensus 85 vl-~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~ 123 (490)
++ .+.+..++++.++|++|.+.--+...+.+.+.++.+.
T Consensus 109 li~~~~l~~mk~~ailIN~~RG~ivd~~aL~~aL~~~~i~ 148 (181)
T d1qp8a1 109 LVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQF 148 (181)
T ss_dssp CBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHHHCTTC
T ss_pred ccccceeeeccccceEEeccccccccchhhhhhcccCcEE
Confidence 77 6777889999999999988777777778888876543
|
| >d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Probab=98.82 E-value=3.5e-09 Score=96.15 Aligned_cols=120 Identities=20% Similarity=0.303 Sum_probs=95.4
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
++|||||+|++|+.+|+.+..-|.+|.+||+.....+....... ....+++++++. +|+|++++|-.+.++.
T Consensus 48 ~tvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~~~~-----~~~~~l~~ll~~---sD~v~l~~plt~~T~~ 119 (191)
T d1gdha1 48 KTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASSSDEASYQA-----TFHDSLDSLLSV---SQFFSLNAPSTPETRY 119 (191)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCCHHHHHHHTC-----EECSSHHHHHHH---CSEEEECCCCCTTTTT
T ss_pred cceEEeecccchHHHHHHHHhhccccccccccccccchhhcccc-----cccCCHHHHHhh---CCeEEecCCCCchHhh
Confidence 68999999999999999999999999999987553333322221 246789999998 9999999999988888
Q ss_pred HH-HhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCCC
Q psy9637 85 FI-DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGG 132 (490)
Q Consensus 85 vl-~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg 132 (490)
++ ++.+..+++|.++|+.|-+.--+...+.+.+++..+.....-|+-.
T Consensus 120 li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~g~i~~a~lDV~~~ 168 (191)
T d1gdha1 120 FFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDVFAG 168 (191)
T ss_dssp CBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTT
T ss_pred eecHHHhhCcCCccEEEecCCccchhhHHHHHHHHcCCceEEEEECCCC
Confidence 87 5677889999999999998888888888888887665433334333
|
| >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Probab=98.81 E-value=3.7e-09 Score=96.16 Aligned_cols=110 Identities=20% Similarity=0.311 Sum_probs=89.9
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
++|||||+|++|+.+|+.+..-|.+|.+||+....-.. ...+ +....++++++.. +|+|++++|-...++.
T Consensus 50 ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~-~~~~-----~~~~~~l~~ll~~---sD~i~~~~plt~~T~~ 120 (193)
T d1mx3a1 50 ETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGVE-RALG-----LQRVSTLQDLLFH---SDCVTLHCGLNEHNHH 120 (193)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCTTHH-HHHT-----CEECSSHHHHHHH---CSEEEECCCCCTTCTT
T ss_pred ceEEEeccccccccceeeeeccccceeeccCcccccch-hhhc-----cccccchhhcccc---CCEEEEeecccccchh
Confidence 58999999999999999999999999999987543221 1112 2357899999998 9999999999888877
Q ss_pred HH-HhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccc
Q psy9637 85 FI-DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLL 123 (490)
Q Consensus 85 vl-~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~ 123 (490)
.+ .+.+..++++.++|++|.+.--+...+.+.+.+..+.
T Consensus 121 li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~~~i~ 160 (193)
T d1mx3a1 121 LINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIR 160 (193)
T ss_dssp SBSHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHTSEE
T ss_pred hhhHHHHhccCCCCeEEecCCceEEcHHHHHHHHHcCCce
Confidence 77 5677789999999999998878888888888876554
|
| >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Probab=98.77 E-value=7.4e-09 Score=94.40 Aligned_cols=118 Identities=20% Similarity=0.278 Sum_probs=92.7
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
++|||||+|.+|..+|+.|..-|.+|.+||+....... ..+. ...++.+++.. +|+|++++|-...++.
T Consensus 44 k~vgIiG~G~IG~~va~~l~~fg~~V~~~d~~~~~~~~--~~~~------~~~~l~~~l~~---sDii~~~~plt~~T~~ 112 (197)
T d1j4aa1 44 QVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPELE--KKGY------YVDSLDDLYKQ---ADVISLHVPDVPANVH 112 (197)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHHHH--HTTC------BCSCHHHHHHH---CSEEEECSCCCGGGTT
T ss_pred CeEEEecccccchhHHHhHhhhcccccccCcccccccc--ccee------eeccccccccc---cccccccCCccccccc
Confidence 58999999999999999999999999999987654322 2221 35789999988 9999999999888877
Q ss_pred HH-HhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCCCc
Q psy9637 85 FI-DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGGE 133 (490)
Q Consensus 85 vl-~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg~ 133 (490)
.+ .+.+..++++.++|+.|-+.--+...+.+.+.+..+.....-|.-.+
T Consensus 113 li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~~~i~~a~lDV~~~E 162 (197)
T d1j4aa1 113 MINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYEGE 162 (197)
T ss_dssp CBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTC
T ss_pred cccHHHHhhhCCccEEEecCchhhhhhHHHHHHHhcccchheeeeccccC
Confidence 77 56677889999999999887777777888888765544333344333
|
| >d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.74 E-value=1.4e-08 Score=91.66 Aligned_cols=110 Identities=17% Similarity=0.250 Sum_probs=91.6
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
++|||||+|.+|..+|+.+..-|.+|.+||+.....+... .+. ...+++++++. +|+|++++|-.+.++.
T Consensus 45 k~vgiiG~G~IG~~va~~~~~fg~~v~~~d~~~~~~~~~~-~~~------~~~~l~ell~~---sDiv~~~~Plt~~T~~ 114 (184)
T d1ygya1 45 KTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSPARAAQ-LGI------ELLSLDDLLAR---ADFISVHLPKTPETAG 114 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCHHHHHH-HTC------EECCHHHHHHH---CSEEEECCCCSTTTTT
T ss_pred eeeeeccccchhHHHHHHhhhccceEEeecCCCChhHHhh-cCc------eeccHHHHHhh---CCEEEEcCCCCchhhh
Confidence 5899999999999999999999999999998765543322 222 25689999988 9999999999988888
Q ss_pred HH-HhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccc
Q psy9637 85 FI-DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLY 124 (490)
Q Consensus 85 vl-~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ 124 (490)
++ .+.+..++++.++|+.|.+.--+...+.+.+....+..
T Consensus 115 lin~~~l~~mk~~a~lIN~sRG~iVde~aL~~aL~~~~i~~ 155 (184)
T d1ygya1 115 LIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRA 155 (184)
T ss_dssp CBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHTSSEEE
T ss_pred hhhHHHHhhhCCCceEEEecchhhhhhHHHHHHHhcCcEeE
Confidence 87 57778899999999999988888888888888776543
|
| >d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Probab=98.72 E-value=9.5e-09 Score=93.02 Aligned_cols=115 Identities=14% Similarity=0.170 Sum_probs=93.4
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
++|||||+|++|..+|+.|..-|.+|.+||+.+.........+ +....++.++.+. +|+|++++|-.+.++.
T Consensus 45 ~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~~~-----~~~~~~l~~~l~~---sD~v~~~~plt~~T~~ 116 (188)
T d2naca1 45 MHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKELN-----LTWHATREDMYPV---CDVVTLNCPLHPETEH 116 (188)
T ss_dssp CEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCCHHHHHHHT-----CEECSSHHHHGGG---CSEEEECSCCCTTTTT
T ss_pred cceeeccccccchhhhhhhhccCceEEEEeecccccccccccc-----ccccCCHHHHHHh---ccchhhcccccccchh
Confidence 5899999999999999999999999999998644333333222 2357899999887 9999999999988888
Q ss_pred HH-HhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccc--cccc
Q psy9637 85 FI-DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLL--YVGC 127 (490)
Q Consensus 85 vl-~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~--~ld~ 127 (490)
++ .+.+..+++|.++|+++.+.--+...+.+.+.+..+. .+|.
T Consensus 117 li~~~~l~~mk~ga~lIN~aRG~ivd~~aL~~aL~~g~i~ga~lDV 162 (188)
T d2naca1 117 MINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDV 162 (188)
T ss_dssp CBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHTTSEEEEEESC
T ss_pred hhHHHHHHhCCCCCEEEecCchhhhhHHHHHHHHhCCCceeEEEeC
Confidence 88 6777889999999999998888888888888876554 4454
|
| >d3cuma1 a.100.1.1 (A:163-296) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.70 E-value=1.6e-08 Score=86.36 Aligned_cols=101 Identities=16% Similarity=0.118 Sum_probs=74.0
Q ss_pred CCCCcchhHHhhhhHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhccCcchhHHHHHHHHHhcc-------cCCCCC
Q psy9637 354 EQGAGHFVKMVHNGIEYGDMQLICEAYHLMTGALGMSHDEMSAVFEDWNKGELDSFLIEITKDILKF-------KDTDGA 426 (490)
Q Consensus 354 ~~g~gh~vkmvhngiey~~m~~~~E~~~~~~~~~~~~~~~~~~~~~~w~~g~~~s~l~~~~~~~~~~-------~~~~~~ 426 (490)
|.|+||.+|+|||.|.++++++++|++.+.++ .|+ |..++++.-++++-+||.++.-...... .+.+..
T Consensus 1 P~GsG~~~Kl~~N~l~~~~~~a~aEal~la~~-~Gl---d~~~~~eil~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (134)
T d3cuma1 1 PDGAGQVAKVCNNQLLAVLMIGTAEAMALGVA-NGL---EAKVLAEIMRRSSGGNWALEVYNPWPGVMENAPASRDYSGG 76 (134)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTC---CHHHHHHHHHTSTTCCHHHHHCCCSTTSSTTSGGGGTTCSS
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCC---CHHHHHHHHHhcccchhhhhhhhhhhhccchhhhcCCCCCC
Confidence 68999999999999999999999999999998 898 6788888888899999998874321111 111111
Q ss_pred cchhhhccccCCCcchHHHHHHHHhcCCCchhhHHHHH
Q psy9637 427 PLVEKIKDYAGQKGTGKWTAISALDYGVPVTLIGESVF 464 (490)
Q Consensus 427 ~~l~~i~~~~~~~g~g~w~~~~a~~~~~p~~~i~~a~~ 464 (490)
..++.+.. .-+=..+.|.+.++|+|+...+..
T Consensus 77 f~~~l~~K------Dl~l~~~~a~~~g~~~p~~~~a~~ 108 (134)
T d3cuma1 77 FMAQLMAK------DLGLAQEAAQASASSTPMGSLALS 108 (134)
T ss_dssp SBHHHHHH------HHHHHHHHHHHHTCCCHHHHHHHH
T ss_pred cchHHHHH------HHHHHHHHHHHcCCCChHHHHHHH
Confidence 12222221 123567889999999998766654
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=98.67 E-value=5.1e-08 Score=85.97 Aligned_cols=118 Identities=13% Similarity=0.135 Sum_probs=79.3
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCC-eeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTN-IIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~-i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
++|.|||+|.||..+|.+|.++||+|+++|||.++++.+.+....... .............+...|+++.++|.. ...
T Consensus 3 K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~-~~~ 81 (182)
T d1e5qa1 3 KSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIPYT-FHA 81 (182)
T ss_dssp CEEEEECCSTTHHHHHHHHHTTTCEEEEEESCHHHHHHHHTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECSCGG-GHH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEECChHHHHHHHhcccccccccccccchhhhHhhhhccceeEeeccch-hhh
Confidence 589999999999999999999999999999999999998875432000 011233333333344589999999875 333
Q ss_pred HHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccccccc
Q psy9637 84 DFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGC 127 (490)
Q Consensus 84 ~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~ 127 (490)
.+.... +..+..++|.+... .....+.+.....+..+++.
T Consensus 82 ~~~~~~---~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~ 121 (182)
T d1e5qa1 82 TVIKSA---IRQKKHVVTTSYVS-PAMMELDQAAKDAGITVMNE 121 (182)
T ss_dssp HHHHHH---HHHTCEEECSSCCC-HHHHHTHHHHHHTTCEEECS
T ss_pred HHHHHH---HhhccceeecccCc-HHHHHHHHHhccccceeehh
Confidence 333333 33567888887654 44455556556566555433
|
| >d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=98.63 E-value=9.3e-09 Score=93.94 Aligned_cols=108 Identities=24% Similarity=0.320 Sum_probs=88.7
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
++|||||+|++|+.+|+.|..-|.+|.+||+.+.... ... ....+++++... +|+|.+++|....++.
T Consensus 46 ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~--------~~~-~~~~~l~~l~~~---~D~v~~~~plt~~T~~ 113 (199)
T d1dxya1 46 QTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMKGD--------HPD-FDYVSLEDLFKQ---SDVIDLHVPGIEQNTH 113 (199)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSSC--------CTT-CEECCHHHHHHH---CSEEEECCCCCGGGTT
T ss_pred eeeeeeecccccccccccccccceeeeccCCccchhh--------hcc-hhHHHHHHHHHh---cccceeeecccccccc
Confidence 5899999999999999999999999999998754211 011 135689999988 9999999999988887
Q ss_pred HH-HhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccc
Q psy9637 85 FI-DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLY 124 (490)
Q Consensus 85 vl-~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ 124 (490)
++ .+.+..++++.++|+.+.+.--+...+.+.+.+..+..
T Consensus 114 li~~~~l~~mk~~a~lIN~aRG~vvde~aL~~aL~~g~i~g 154 (199)
T d1dxya1 114 IINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAG 154 (199)
T ss_dssp SBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTTSEEE
T ss_pred cccHHHhhccCCceEEEecccHhhhhhHHHHHHHhcCCcce
Confidence 77 56777899999999999988788888888888765543
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=98.61 E-value=5.9e-08 Score=85.26 Aligned_cols=95 Identities=18% Similarity=0.202 Sum_probs=69.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchH
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGF-TVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAV 82 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v 82 (490)
..+|.|||+|.||..++.+|.+.|+ ++++++|+.++++.+.+... ......+++.+.+.+ +|+||.|++++..+
T Consensus 24 ~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~~--~~~~~~~~~~~~l~~---~Divi~atss~~~i 98 (159)
T d1gpja2 24 DKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLG--GEAVRFDELVDHLAR---SDVVVSATAAPHPV 98 (159)
T ss_dssp TCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHT--CEECCGGGHHHHHHT---CSEEEECCSSSSCC
T ss_pred cCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhhh--cccccchhHHHHhcc---CCEEEEecCCCCcc
Confidence 3689999999999999999999998 69999999999998876532 122234455555544 99999999877543
Q ss_pred --HHHHHhhcccC--CCCCEEEcCC
Q psy9637 83 --DDFIDKLVPLL--EKGDIIIDGG 103 (490)
Q Consensus 83 --~~vl~~l~~~l--~~g~iiId~s 103 (490)
.+.++.....- .+..+|||.+
T Consensus 99 i~~~~i~~~~~~r~~~~~~~iiDla 123 (159)
T d1gpja2 99 IHVDDVREALRKRDRRSPILIIDIA 123 (159)
T ss_dssp BCHHHHHHHHHHCSSCCCEEEEECC
T ss_pred ccHhhhHHHHHhcccCCCeEEEeec
Confidence 45554443322 2345899996
|
| >d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=98.61 E-value=3.6e-08 Score=89.09 Aligned_cols=107 Identities=21% Similarity=0.321 Sum_probs=89.1
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
++|||||+|.+|..+|+.+..-|.+|.+||+..... ........+++++++. +|+|++++|-.+.+..
T Consensus 45 ~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~---------~~~~~~~~~l~ell~~---sDii~i~~plt~~T~~ 112 (188)
T d1sc6a1 45 KKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLP---------LGNATQVQHLSDLLNM---SDVVSLHVPENPSTKN 112 (188)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCC---------CTTCEECSCHHHHHHH---CSEEEECCCSSTTTTT
T ss_pred eEEEEeecccchhhhhhhcccccceEeeccccccch---------hhhhhhhhhHHHHHhh---ccceeecccCCcchhh
Confidence 589999999999999999999999999999864311 1112346789999988 9999999999888887
Q ss_pred HH-HhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccc
Q psy9637 85 FI-DKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLL 123 (490)
Q Consensus 85 vl-~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~ 123 (490)
++ ++.+..++++.++|+.+.+.--+...+.+.+.+..+.
T Consensus 113 li~~~~l~~mk~~a~lIN~aRG~lvde~aL~~aL~~~~~~ 152 (188)
T d1sc6a1 113 MMGAKEISLMKPGSLLINASRGTVVDIPALADALASKHLA 152 (188)
T ss_dssp CBCHHHHHHSCTTEEEEECSCSSSBCHHHHHHHHHTTSEE
T ss_pred hccHHHHhhCCCCCEEEEcCcHHhhhhHHHHHHHHcCCce
Confidence 77 6777889999999999998878888888888776544
|
| >d1vpda1 a.100.1.1 (A:164-296) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=98.50 E-value=1.6e-07 Score=79.85 Aligned_cols=102 Identities=15% Similarity=0.130 Sum_probs=77.0
Q ss_pred CCCcchhHHhhhhHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhccCcchhHHHHHHHHHhcccCCCCCcchhhhcc
Q psy9637 355 QGAGHFVKMVHNGIEYGDMQLICEAYHLMTGALGMSHDEMSAVFEDWNKGELDSFLIEITKDILKFKDTDGAPLVEKIKD 434 (490)
Q Consensus 355 ~g~gh~vkmvhngiey~~m~~~~E~~~~~~~~~~~~~~~~~~~~~~w~~g~~~s~l~~~~~~~~~~~~~~~~~~l~~i~~ 434 (490)
.|+||-+|+|||.+-++.+++++|++.+... .|+ |..++++..++++.+||.++.-..-.-..|.+....++....
T Consensus 2 vG~g~~~Kl~nN~l~~~~~~~~aEal~la~~-~Gi---d~~~~~~~l~~~~~~S~~~~~~~~~~~~~~~~~~f~~~l~~K 77 (133)
T d1vpda1 2 IGAGNVTKLANQVIVALNIAAMSEALTLATK-AGV---NPDLVYQAIRGGLAGSTVLDAKAPMVMDRNFKPGFRIDLHIK 77 (133)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTC---CHHHHHHHHTTSTTCCHHHHHHHHHHHTTCCCCSSBHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCC---CHHHHHHHHHhccccchhhhhccchhhhccCCCCchHHHHHH
Confidence 5899999999999999999999999999997 898 678888889999888888877554443234221122333322
Q ss_pred ccCCCcchHHHHHHHHhcCCCchhhHHHHHHH
Q psy9637 435 YAGQKGTGKWTAISALDYGVPVTLIGESVFSR 466 (490)
Q Consensus 435 ~~~~~g~g~w~~~~a~~~~~p~~~i~~a~~~r 466 (490)
.-+-..+.|.+.++|+|+...+....
T Consensus 78 ------Dl~l~~~~a~~~~~~~p~~~~~~~~~ 103 (133)
T d1vpda1 78 ------DLANALDTSHGVGAQLPLTAAVMEMM 103 (133)
T ss_dssp ------HHHHHHHHHHHHTCCCHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 12357788999999999888776543
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=98.47 E-value=3.1e-07 Score=77.62 Aligned_cols=113 Identities=20% Similarity=0.330 Sum_probs=74.5
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeec-cCCHHHHHh-hCCCCcEEEEecCCCchH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIG-AHSLEELVK-NLKKPRRVMMLVKAGSAV 82 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~-~~s~~e~v~-~l~~~dvIil~vp~~~~v 82 (490)
+++.|+|+|.+|..+|+.|.+.|++|+++|.++++++.+...+.. -+.. .++++-+.+ .++++|.++++++++...
T Consensus 1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~~~~~--~~~gd~~~~~~l~~a~i~~a~~vi~~~~~~~~~ 78 (134)
T d2hmva1 1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATH--AVIANATEENELLSLGIRNFEYVIVAIGANIQA 78 (134)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTTTCSE--EEECCTTCTTHHHHHTGGGCSEEEECCCSCHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHHhCCc--ceeeecccchhhhccCCccccEEEEEcCchHHh
Confidence 378999999999999999999999999999999999998765532 0111 222222211 245689999999987554
Q ss_pred HHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccccc
Q psy9637 83 DDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYV 125 (490)
Q Consensus 83 ~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~l 125 (490)
..++..+....+...+++-..+. ...+.+...|+.++
T Consensus 79 ~~~~~~~~~~~~~~~iiar~~~~------~~~~~l~~~Gad~v 115 (134)
T d2hmva1 79 STLTTLLLKELDIPNIWVKAQNY------YHHKVLEKIGADRI 115 (134)
T ss_dssp HHHHHHHHHHTTCSEEEEECCSH------HHHHHHHHHTCSEE
T ss_pred HHHHHHHHHHcCCCcEEeecccH------hHHHHHHHCCCCEE
Confidence 44444444555555565554432 12334555566443
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.46 E-value=6.8e-08 Score=85.80 Aligned_cols=43 Identities=23% Similarity=0.366 Sum_probs=39.6
Q ss_pred CcEEEE-cccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcc
Q psy9637 5 GDIGLI-GLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANE 47 (490)
Q Consensus 5 ~~IgiI-GlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g 47 (490)
|||+|| |+|.||..||++|+++||+|++|+|++++++.+.++.
T Consensus 1 Mki~vigGaG~iG~alA~~la~~G~~V~l~~R~~e~~~~l~~~i 44 (212)
T d1jaya_ 1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEY 44 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHH
T ss_pred CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence 589999 8999999999999999999999999999998887653
|
| >d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class I ketol-acid reductoisomerase (KARI) species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.44 E-value=3.9e-07 Score=79.83 Aligned_cols=88 Identities=22% Similarity=0.289 Sum_probs=72.4
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChH-HHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTA-KVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~-~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
++|+|||.|.-|.+-|+||.+.|.+|++--|... ..+...+.|.+ ..+++|+++. +|+|++.+|+. .-.
T Consensus 17 k~IaViGYGsQG~AhAlNLrDSG~~V~VGLr~gs~s~~~A~~~Gf~------v~~~~eA~~~---aDiim~L~PD~-~q~ 86 (182)
T d1np3a2 17 KKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGLK------VADVKTAVAA---ADVVMILTPDE-FQG 86 (182)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHTTCE------EECHHHHHHT---CSEEEECSCHH-HHH
T ss_pred CEEEEEeeCcHhHHHHhhhhhcCCCEEEEcCCCCccHHHHhhhccc------cccHHHHhhh---cCeeeeecchH-HHH
Confidence 6899999999999999999999999999877654 34555555543 6799999998 99999999984 556
Q ss_pred HHH-HhhcccCCCCCEEEcC
Q psy9637 84 DFI-DKLVPLLEKGDIIIDG 102 (490)
Q Consensus 84 ~vl-~~l~~~l~~g~iiId~ 102 (490)
++. +.+.|+|++|+.+.=.
T Consensus 87 ~vy~~~I~p~lk~g~~L~Fa 106 (182)
T d1np3a2 87 RLYKEEIEPNLKKGATLAFA 106 (182)
T ss_dssp HHHHHHTGGGCCTTCEEEES
T ss_pred HHHHHhhhhhcCCCcEEEEe
Confidence 667 5799999999988644
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.41 E-value=1.3e-06 Score=73.79 Aligned_cols=112 Identities=15% Similarity=0.160 Sum_probs=75.6
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeec-cCCHHHHHh-hCCCCcEEEEecCCCchH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIG-AHSLEELVK-NLKKPRRVMMLVKAGSAV 82 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~-~~s~~e~v~-~l~~~dvIil~vp~~~~v 82 (490)
|+|-|+|+|.+|..+++.|.+.|++|++.|.++++++.+.+.... .-+.. ..+++-+-+ .++.+|.++.+++++ ..
T Consensus 1 M~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~~~-~vi~Gd~~~~~~l~~~~i~~a~~vv~~t~~d-~~ 78 (132)
T d1lssa_ 1 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDA-LVINGDCTKIKTLEDAGIEDADMYIAVTGKE-EV 78 (132)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSS-EEEESCTTSHHHHHHTTTTTCSEEEECCSCH-HH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhhhh-hhccCcccchhhhhhcChhhhhhhcccCCcH-HH
Confidence 589999999999999999999999999999999999988765211 11121 233333322 256799999888885 44
Q ss_pred HHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccc
Q psy9637 83 DDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLY 124 (490)
Q Consensus 83 ~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ 124 (490)
.-.+..+...+.+..+|+-..+..+ .+.+.+.|+.+
T Consensus 79 N~~~~~~~k~~~~~~iI~~~~~~~~------~~~l~~~G~d~ 114 (132)
T d1lssa_ 79 NLMSSLLAKSYGINKTIARISEIEY------KDVFERLGVDV 114 (132)
T ss_dssp HHHHHHHHHHTTCCCEEEECSSTTH------HHHHHHTTCSE
T ss_pred HHHHHHHHHHcCCceEEEEecCHHH------HHHHHHCCCCE
Confidence 4444445556677777766554332 23445556643
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=98.38 E-value=6.8e-07 Score=77.11 Aligned_cols=104 Identities=14% Similarity=0.161 Sum_probs=69.9
Q ss_pred CCCCCcEEEEcccHHHHHHHHHHHHCC--CeEEEEeCChHHHHHHHHc-----ccCCCCeeccCCHHHHHhhCCCCcEEE
Q psy9637 1 MAAKGDIGLIGLAVMGQNLILNMNDHG--FTVVAYNRTTAKVDSFLAN-----EAKGTNIIGAHSLEELVKNLKKPRRVM 73 (490)
Q Consensus 1 M~~~~~IgiIGlG~MG~~lA~~L~~~G--~~V~v~dr~~~~~~~l~~~-----g~~~~~i~~~~s~~e~v~~l~~~dvIi 73 (490)
|..+|||+|||+|.+|..+|..|+.+| .+|++||+++++++..... ...........+++++ ..+|+|+
T Consensus 2 m~~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~~~~~d~~~~----~~adivv 77 (146)
T d1ez4a1 2 MPNHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEYSDC----KDADLVV 77 (146)
T ss_dssp BTTBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCGGGG----TTCSEEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccccccCCceEeeccHHHh----ccccEEE
Confidence 656789999999999999999999988 5899999998876543311 1112233445666654 3389999
Q ss_pred EecCCCc---------------hHHHHHHhhcccCCCCCEEEcCCCCChHHHH
Q psy9637 74 MLVKAGS---------------AVDDFIDKLVPLLEKGDIIIDGGNSEYQDTD 111 (490)
Q Consensus 74 l~vp~~~---------------~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~ 111 (490)
++...+. .++++.+.+.++ .+..++|..+| |-+..
T Consensus 78 itag~~~~~g~~r~~l~~~N~~i~~~~~~~i~~~-~p~aivivvtN--Pvdv~ 127 (146)
T d1ez4a1 78 ITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDS-GFDGIFLVAAN--PVDIL 127 (146)
T ss_dssp ECCCC----------CHHHHHHHHHHHHHHHHHT-TCCSEEEECSS--SHHHH
T ss_pred EecccccCCCCCHHHHHHHHHHHHHHHHHHHhhc-CCCcEEEEeCC--ccHHH
Confidence 9874432 133444556554 46778888887 44443
|
| >d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Probable oxidoreductase At4g09670 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.37 E-value=1.5e-06 Score=77.51 Aligned_cols=115 Identities=19% Similarity=0.221 Sum_probs=80.3
Q ss_pred CcEEEEcccHHHHHHHHHHHHC-CCeEE-EEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDH-GFTVV-AYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAV 82 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v 82 (490)
+||||||+|.||...+..|... +++|+ ++|+++++.+.+.+..........+++++++++. +.+|+|++++|+....
T Consensus 2 iki~iIG~G~~g~~~~~~l~~~~~~~i~ai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~-~~iD~v~I~tp~~~h~ 80 (184)
T d1ydwa1 2 IRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIHGSYESLLED-PEIDALYVPLPTSLHV 80 (184)
T ss_dssp EEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESSHHHHHHC-TTCCEEEECCCGGGHH
T ss_pred eEEEEEcCCHHHHHHHHHHHhCCCCEEEEEEeCCccccccchhccccccceeecCcHHHhhhc-cccceeeecccchhhc
Confidence 5899999999999999998876 56766 6899999988877653222233467899999875 4589999999997554
Q ss_pred HHHHHhhcccCCCCC-EEEcCC-CCChHHHHHHHHHHHHccccc
Q psy9637 83 DDFIDKLVPLLEKGD-IIIDGG-NSEYQDTDRRSKALEAKGLLY 124 (490)
Q Consensus 83 ~~vl~~l~~~l~~g~-iiId~s-~~~~~~~~~~~~~l~~~gi~~ 124 (490)
+-+.. + ++.|. ++++-- .....+..++.+..++++..+
T Consensus 81 ~~~~~-~---l~~g~~v~~EKP~~~~~~e~~~l~~~~~~~~~~~ 120 (184)
T d1ydwa1 81 EWAIK-A---AEKGKHILLEKPVAMNVTEFDKIVDACEANGVQI 120 (184)
T ss_dssp HHHHH-H---HTTTCEEEECSSCSSSHHHHHHHHHHHHTTTCCE
T ss_pred chhhh-h---hhccceeecccccccCHHHHHHHHHHHHhhCCEE
Confidence 44333 2 33454 455531 124566677777777666644
|
| >d2cvza1 a.100.1.1 (A:158-289) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=98.29 E-value=8.5e-07 Score=75.08 Aligned_cols=101 Identities=15% Similarity=0.007 Sum_probs=74.2
Q ss_pred CCCcchhHHhhhhHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhccCcchhHHHHHHH-HHhcccCCCCCcchhhhc
Q psy9637 355 QGAGHFVKMVHNGIEYGDMQLICEAYHLMTGALGMSHDEMSAVFEDWNKGELDSFLIEITK-DILKFKDTDGAPLVEKIK 433 (490)
Q Consensus 355 ~g~gh~vkmvhngiey~~m~~~~E~~~~~~~~~~~~~~~~~~~~~~w~~g~~~s~l~~~~~-~~~~~~~~~~~~~l~~i~ 433 (490)
.|+||-+|+|+|-+-.+.+++++|++.+.++ .|+ |..++++..+.++.+||.++.-. +.....|.+..-.++...
T Consensus 1 VG~g~~~Kl~nN~l~~~~~~~~aEal~la~~-~Gl---d~~~~~~vl~~s~~~s~~~~~~~p~~~~~~~~~~~f~~~~~~ 76 (132)
T d2cvza1 1 VGAGHAVKAINNALLAVNLWAAGEGLLALVK-QGV---SAEKALEVINASSGRSNATENLIPQRVLTRAFPKTFALGLLV 76 (132)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTC---CHHHHHHHHTTSTTCBHHHHHTHHHHTTTSCCCCSSBHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCC---CHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhhhhhHHHHHh
Confidence 3899999999999999999999999999998 898 77888888998888888877533 222222322112333333
Q ss_pred cccCCCcchHHHHHHHHhcCCCchhhHHHHHH
Q psy9637 434 DYAGQKGTGKWTAISALDYGVPVTLIGESVFS 465 (490)
Q Consensus 434 ~~~~~~g~g~w~~~~a~~~~~p~~~i~~a~~~ 465 (490)
. .-+-....|.+.++|+|+...+...
T Consensus 77 K------Dl~l~~~~a~~~g~~~pl~~~~~~~ 102 (132)
T d2cvza1 77 K------DLGIAMGVLDGEKAPSPLLRLAREV 102 (132)
T ss_dssp H------HHHHHHHHHTTTCCCCHHHHHHHHH
T ss_pred h------HHHHHHHHHHHcCCCChHHHHHHHH
Confidence 2 2336778899999999977666544
|
| >d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Virulence factor MviM species: Escherichia coli [TaxId: 562]
Probab=98.23 E-value=2.9e-06 Score=74.15 Aligned_cols=108 Identities=24% Similarity=0.289 Sum_probs=74.5
Q ss_pred CCcEEEEcccHHHHH-HHHHHHHC-CCeEE-EEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCc
Q psy9637 4 KGDIGLIGLAVMGQN-LILNMNDH-GFTVV-AYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGS 80 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~-lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~ 80 (490)
++||||||+|.||.. ....+... +++++ ++|+++++.+.+.+... +..+++.+++.++ +|+|++++|+..
T Consensus 1 Kiri~iIG~G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~~~~~~~~~~----~~~~~~~~~l~~~---~D~V~I~tp~~~ 73 (164)
T d1tlta1 1 KLRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWR----IPYADSLSSLAAS---CDAVFVHSSTAS 73 (164)
T ss_dssp CEEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHT----CCBCSSHHHHHTT---CSEEEECSCTTH
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEEechhHhhhhhhhccc----ccccccchhhhhh---cccccccccchh
Confidence 468999999999986 45555543 56655 78999999888876532 2357888888766 899999999974
Q ss_pred hHHHHHHhhcccCCCC-CEEEcC--CCCChHHHHHHHHHHHHcccc
Q psy9637 81 AVDDFIDKLVPLLEKG-DIIIDG--GNSEYQDTDRRSKALEAKGLL 123 (490)
Q Consensus 81 ~v~~vl~~l~~~l~~g-~iiId~--s~~~~~~~~~~~~~l~~~gi~ 123 (490)
..+-+ ..++. .| .++++- ++ ...+..++.+.+++.|..
T Consensus 74 h~~~~-~~al~---~gk~V~~EKPla~-~~~e~~~l~~~a~~~~~~ 114 (164)
T d1tlta1 74 HFDVV-STLLN---AGVHVCVDKPLAE-NLRDAERLVELAARKKLT 114 (164)
T ss_dssp HHHHH-HHHHH---TTCEEEEESSSCS-SHHHHHHHHHHHHHTTCC
T ss_pred ccccc-ccccc---ccceeeccccccC-CHHHHHHHHHHHHHcCCc
Confidence 44433 33332 34 466663 33 457777777777777654
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=98.21 E-value=3.2e-06 Score=73.39 Aligned_cols=101 Identities=12% Similarity=0.136 Sum_probs=69.3
Q ss_pred CCCCCcEEEEcccHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHcc-------cCCCCeeccCCHHHHHhhCCCCcEE
Q psy9637 1 MAAKGDIGLIGLAVMGQNLILNMNDHGF-TVVAYNRTTAKVDSFLANE-------AKGTNIIGAHSLEELVKNLKKPRRV 72 (490)
Q Consensus 1 M~~~~~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~g-------~~~~~i~~~~s~~e~v~~l~~~dvI 72 (490)
|+.++||+|||+|.+|..+|..|+.+++ +++++|+++++++...... .....+...++.++..++ +|+|
T Consensus 4 ~~k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~~---adiV 80 (154)
T d1pzga1 4 VQRRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTG---ADCV 80 (154)
T ss_dssp CSCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTT---CSEE
T ss_pred ccCCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEeccccchhHHHHHhhhccccCCeeEEeccCchhhhhcC---CCeE
Confidence 4556899999999999999999988886 8999999987765443211 112234445667666666 8999
Q ss_pred EEecCCCc--------------------hHHHHHHhhcccCCCCCEEEcCCCC
Q psy9637 73 MMLVKAGS--------------------AVDDFIDKLVPLLEKGDIIIDGGNS 105 (490)
Q Consensus 73 il~vp~~~--------------------~v~~vl~~l~~~l~~g~iiId~s~~ 105 (490)
+++...+. .++++++.+.++ .++.+|+..||-
T Consensus 81 vitag~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~-~p~aiviivsNP 132 (154)
T d1pzga1 81 IVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKY-CPKTFIIVVTNP 132 (154)
T ss_dssp EECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHH-CTTCEEEECCSS
T ss_pred EEecccccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhc-CCCcEEEEeCCc
Confidence 99873211 134444555544 467888888873
|
| >d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM0312 species: Thermotoga maritima [TaxId: 2336]
Probab=98.15 E-value=9.4e-06 Score=72.05 Aligned_cols=114 Identities=17% Similarity=0.252 Sum_probs=76.9
Q ss_pred CCCCCcEEEEcccHHHHH-HHHHHHHCC--CeEE-EEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEec
Q psy9637 1 MAAKGDIGLIGLAVMGQN-LILNMNDHG--FTVV-AYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLV 76 (490)
Q Consensus 1 M~~~~~IgiIGlG~MG~~-lA~~L~~~G--~~V~-v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~v 76 (490)
|+ ++||||||+|.+|.. ....+.+.+ ++|+ ++|+++++.+.+.+.... ...+++++++++. +..|+|++++
T Consensus 1 Mk-kirigiIG~G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~~~~~~~~~---~~~~~~~~ell~~-~~id~v~I~t 75 (181)
T d1zh8a1 1 LR-KIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGN---PAVFDSYEELLES-GLVDAVDLTL 75 (181)
T ss_dssp CC-CEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSS---CEEESCHHHHHHS-SCCSEEEECC
T ss_pred CC-CcEEEEEcCCHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhhhhhccccc---cceeeeeeccccc-cccceeeccc
Confidence 64 468999999999987 466666533 4555 789999999888765321 1357899999875 4589999999
Q ss_pred CCCchHHHHHHhhcccCCCC-CEEEcCC-CCChHHHHHHHHHHHHcccc
Q psy9637 77 KAGSAVDDFIDKLVPLLEKG-DIIIDGG-NSEYQDTDRRSKALEAKGLL 123 (490)
Q Consensus 77 p~~~~v~~vl~~l~~~l~~g-~iiId~s-~~~~~~~~~~~~~l~~~gi~ 123 (490)
|+... .+++..++. .| .++++-- .....+..++.+..++++..
T Consensus 76 p~~~h-~~~~~~al~---~gk~V~~EKPl~~~~~e~~~l~~~~~~~~~~ 120 (181)
T d1zh8a1 76 PVELN-LPFIEKALR---KGVHVICEKPISTDVETGKKVVELSEKSEKT 120 (181)
T ss_dssp CGGGH-HHHHHHHHH---TTCEEEEESSSSSSHHHHHHHHHHHHHCSSC
T ss_pred ccccc-ccccccccc---cchhhhcCCCCcCCHHHHHHHHHHHHHhCCe
Confidence 98644 444444433 34 3566541 22346666676777766653
|
| >d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Phenylalanine dehydrogenase species: Rhodococcus sp., M4 [TaxId: 1831]
Probab=98.12 E-value=5.7e-06 Score=74.96 Aligned_cols=108 Identities=19% Similarity=0.248 Sum_probs=80.7
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
++|+|.|+|++|..+|+.|.+.|.+|+++|.+++++......+.. .-+++++... .+|+++-|--.+...++
T Consensus 28 k~v~IqG~G~VG~~~A~~L~~~Gakvvv~d~d~~~~~~~~~~g~~------~~~~~~~~~~--~~DI~iPcA~~~~I~~~ 99 (201)
T d1c1da1 28 LTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVALGHT------AVALEDVLST--PCDVFAPCAMGGVITTE 99 (201)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCE------ECCGGGGGGC--CCSEEEECSCSCCBCHH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEecchHHHHHHHHhhccc------ccCccccccc--cceeeecccccccccHH
Confidence 589999999999999999999999999999999998887766543 4456666653 38988866555444455
Q ss_pred HHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccc
Q psy9637 85 FIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVG 126 (490)
Q Consensus 85 vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld 126 (490)
.++.+ +-++|+...|.. .......+.+.++|+.|+.
T Consensus 100 ~a~~i-----~ak~i~e~AN~p-~~~~~~~~~L~~rgI~~iP 135 (201)
T d1c1da1 100 VARTL-----DCSVVAGAANNV-IADEAASDILHARGILYAP 135 (201)
T ss_dssp HHHHC-----CCSEECCSCTTC-BCSHHHHHHHHHTTCEECC
T ss_pred HHhhh-----hhheeeccCCCC-cchhhHHHHhcccceEEEe
Confidence 55544 347888888853 3444455778899998753
|
| >d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class II ketol-acid reductoisomerase (KARI) species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=98.11 E-value=2.9e-06 Score=76.74 Aligned_cols=94 Identities=18% Similarity=0.144 Sum_probs=68.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCC------CeEEEEeC-ChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEec
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHG------FTVVAYNR-TTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLV 76 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G------~~V~v~dr-~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~v 76 (490)
+++|+|||.|.-|.+-|+||.+.| .+|++-=| +....++..+.|....+. ...+++|+++. +|+|++.+
T Consensus 44 ~KkIaViGYGsQG~AhAlNLrDSG~~~~sgv~V~VGLr~gs~S~~kA~~dGf~v~~~-~v~~v~EAv~~---ADiVmiLl 119 (226)
T d1qmga2 44 IKQIGVIGWGSQAPAQAQNLKDSLTEAKSDVVVKIGLRKGSNSFAEARAAGFSEENG-TLGDMWETISG---SDLVLLLI 119 (226)
T ss_dssp CSEEEEECCSSHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCGGGT-CEEEHHHHHHT---CSEEEECS
T ss_pred CCEEEEEEeccHHHHHHHhChhhcccccCCceEEEEeCCCChhHHHHHHcCCccCCC-cccCHHHHHhh---CCEEEEec
Confidence 468999999999999999999955 56766533 323444455555421010 14478888887 99999999
Q ss_pred CCCchHHHHHHhhcccCCCCCEEEcC
Q psy9637 77 KAGSAVDDFIDKLVPLLEKGDIIIDG 102 (490)
Q Consensus 77 p~~~~v~~vl~~l~~~l~~g~iiId~ 102 (490)
|+. .-.++.+++.|+|++|+++.-.
T Consensus 120 PDe-~Q~~vy~~I~p~Lk~G~~L~Fa 144 (226)
T d1qmga2 120 SDS-AQADNYEKVFSHMKPNSILGLS 144 (226)
T ss_dssp CHH-HHHHHHHHHHHHSCTTCEEEES
T ss_pred chH-HHHHHHHHHHHhcCCCceeeec
Confidence 994 6667888999999999988654
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=98.09 E-value=2.7e-06 Score=74.41 Aligned_cols=99 Identities=14% Similarity=0.123 Sum_probs=73.0
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecC--CCchH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVK--AGSAV 82 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp--~~~~v 82 (490)
.||.|||.|..|..-++...+.|-.|+++|.++++.+.+........ -....+.+.+.+.++++|+||.++- ...+-
T Consensus 33 a~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~~~-~~~~~~~~~l~~~~~~aDivI~aalipG~~aP 111 (168)
T d1pjca1 33 GKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRV-ELLYSNSAEIETAVAEADLLIGAVLVPGRRAP 111 (168)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGS-EEEECCHHHHHHHHHTCSEEEECCCCTTSSCC
T ss_pred cEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhcccc-eeehhhhhhHHHhhccCcEEEEeeecCCcccC
Confidence 58999999999999999999999999999999999998877643211 1123444445455556999999883 22211
Q ss_pred HHHHHhhcccCCCCCEEEcCCC
Q psy9637 83 DDFIDKLVPLLEKGDIIIDGGN 104 (490)
Q Consensus 83 ~~vl~~l~~~l~~g~iiId~s~ 104 (490)
.-+-++++..+++|.+|||.+.
T Consensus 112 ~lIt~~mv~~Mk~GSVIVDvai 133 (168)
T d1pjca1 112 ILVPASLVEQMRTGSVIVDVAV 133 (168)
T ss_dssp CCBCHHHHTTSCTTCEEEETTC
T ss_pred eeecHHHHhhcCCCcEEEEeec
Confidence 1122667778999999999875
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.08 E-value=6e-06 Score=71.88 Aligned_cols=90 Identities=8% Similarity=0.068 Sum_probs=70.1
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
++++|+|.|.+|+.+|.++...|.+|++||++|-+.-+..-.|. .+.+.++++.. +|+|++++.....+.
T Consensus 25 k~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp~~al~A~~dG~------~v~~~~~a~~~---adivvtaTGn~~vI~- 94 (163)
T d1li4a1 25 KVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQAAMEGY------EVTTMDEACQE---GNIFVTTTGCIDIIL- 94 (163)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTC------EECCHHHHTTT---CSEEEECSSCSCSBC-
T ss_pred CEEEEeccccccHHHHHHHHhCCCeeEeeecccchhHHhhcCce------Eeeehhhhhhh---ccEEEecCCCccchh-
Confidence 58999999999999999999999999999999976544444443 25678888776 999998887643221
Q ss_pred HHHhhcccCCCCCEEEcCCCCC
Q psy9637 85 FIDKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 85 vl~~l~~~l~~g~iiId~s~~~ 106 (490)
.+-++.+++|.++.+.|...
T Consensus 95 --~eh~~~MKdgaIL~N~Ghfd 114 (163)
T d1li4a1 95 --GRHFEQMKDDAIVCNIGHFD 114 (163)
T ss_dssp --HHHHTTCCTTEEEEECSSST
T ss_pred --HHHHHhccCCeEEEEecccc
Confidence 34556788999999987643
|
| >d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative oxidoreductase VCA1048 species: Vibrio cholerae [TaxId: 666]
Probab=98.07 E-value=1e-05 Score=70.74 Aligned_cols=110 Identities=12% Similarity=0.119 Sum_probs=75.7
Q ss_pred CcEEEEcccHHHHH-HHHHHHHC-CCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchH
Q psy9637 5 GDIGLIGLAVMGQN-LILNMNDH-GFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAV 82 (490)
Q Consensus 5 ~~IgiIGlG~MG~~-lA~~L~~~-G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v 82 (490)
+||||||+|.||.. ....|.+. +.+++++|+++++.+.+.+.... ...+++.+++++. .+|+|++++|+....
T Consensus 2 irvgiiG~G~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~---~~~~~~~~~ll~~--~iD~V~I~tp~~~H~ 76 (167)
T d1xeaa1 2 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYRV---SATCTDYRDVLQY--GVDAVMIHAATDVHS 76 (167)
T ss_dssp EEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTTC---CCCCSSTTGGGGG--CCSEEEECSCGGGHH
T ss_pred eEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhccc---ccccccHHHhccc--ccceecccccccccc
Confidence 58999999999976 45555554 56888999999999988765321 1246788888763 489999999997554
Q ss_pred HHHHHhhcccCCCC-CEEEcC--CCCChHHHHHHHHHHHHccccc
Q psy9637 83 DDFIDKLVPLLEKG-DIIIDG--GNSEYQDTDRRSKALEAKGLLY 124 (490)
Q Consensus 83 ~~vl~~l~~~l~~g-~iiId~--s~~~~~~~~~~~~~l~~~gi~~ 124 (490)
+-+.. ++. .| .++++- +. ...+..++.+...++|..+
T Consensus 77 ~~~~~-al~---~gk~V~~EKP~~~-~~~e~~~l~~~a~~~~~~~ 116 (167)
T d1xeaa1 77 TLAAF-FLH---LGIPTFVDKPLAA-SAQECENLYELAEKHHQPL 116 (167)
T ss_dssp HHHHH-HHH---TTCCEEEESCSCS-SHHHHHHHHHHHHHTTCCE
T ss_pred ccccc-ccc---cccccccCCCCcC-CHHHHHHHHHHHHHcCCEE
Confidence 44433 333 23 366763 33 3467777777777777643
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.99 E-value=1.7e-05 Score=67.69 Aligned_cols=101 Identities=13% Similarity=0.073 Sum_probs=66.9
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC--eEEEEeCChHHHHHHH----Hc---ccCCCCeeccCCHHHHHhhCCCCcEEEEe
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGF--TVVAYNRTTAKVDSFL----AN---EAKGTNIIGAHSLEELVKNLKKPRRVMML 75 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~----~~---g~~~~~i~~~~s~~e~v~~l~~~dvIil~ 75 (490)
|||+|||+|.+|..+|..|+.+|. ++.++|+++++++... .. .....++....+.+++. .+|+|++.
T Consensus 1 MKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~~~~d~~~~~----~adiVvit 76 (142)
T d1ojua1 1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADYSLLK----GSEIIVVT 76 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESCGGGGT----TCSEEEEC
T ss_pred CEEEEECcCHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhccccCCCCccccCCCHHHhc----cccEEEEe
Confidence 699999999999999999998874 7999999998765422 11 11122355556665433 38999987
Q ss_pred cCCCc---------------hHHHHHHhhcccCCCCCEEEcCCCCChHHHHH
Q psy9637 76 VKAGS---------------AVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDR 112 (490)
Q Consensus 76 vp~~~---------------~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~ 112 (490)
...+. .++++.+.+.++ .+..+++..|| |-+..-
T Consensus 77 ag~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~-~p~aivivvtN--PvD~~t 125 (142)
T d1ojua1 77 AGLARKPGMTRLDLAHKNAGIIKDIAKKIVEN-APESKILVVTN--PMDVMT 125 (142)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTT-STTCEEEECSS--SHHHHH
T ss_pred ccccCCCCCchHHHHHHhhHHHHHHHHHHHhh-CCCcEEEEecC--ChHHHH
Confidence 64321 123333455554 46789999988 444443
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=97.99 E-value=1.2e-05 Score=68.58 Aligned_cols=100 Identities=16% Similarity=0.170 Sum_probs=66.1
Q ss_pred CcEEEEcccHHHHHHHHHHHHCC--CeEEEEeCChHHHHHHHHcc-------cCCCCeeccCCHHHHHhhCCCCcEEEEe
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHG--FTVVAYNRTTAKVDSFLANE-------AKGTNIIGAHSLEELVKNLKKPRRVMML 75 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G--~~V~v~dr~~~~~~~l~~~g-------~~~~~i~~~~s~~e~v~~l~~~dvIil~ 75 (490)
|||+|||+|.+|.++|..|+..| .++.+||+++++.+...... ....++...++.+++ + ++|+|+++
T Consensus 1 mKI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~-~---dadvvvit 76 (142)
T d1guza1 1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYADT-A---NSDIVIIT 76 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGGG-T---TCSEEEEC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccchhcccceEEecCCHHHh-c---CCeEEEEE
Confidence 58999999999999999999988 48999999987765432111 012234344555443 3 38999998
Q ss_pred cCCC----c-----------hHHHHHHhhcccCCCCCEEEcCCCCChHHHH
Q psy9637 76 VKAG----S-----------AVDDFIDKLVPLLEKGDIIIDGGNSEYQDTD 111 (490)
Q Consensus 76 vp~~----~-----------~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~ 111 (490)
.-.+ . .++++.+.+.++ .|+.+++..|| |-++.
T Consensus 77 ag~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~-~p~aivivvtN--Pvd~~ 124 (142)
T d1guza1 77 AGLPRKPGMTREDLLMKNAGIVKEVTDNIMKH-SKNPIIIVVSN--PLDIM 124 (142)
T ss_dssp CSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CSSCEEEECCS--SHHHH
T ss_pred EecCCCCCCchHHHHHHHHHHHHHHHHHhhcc-CCCeEEEEecC--ChHHH
Confidence 6321 1 133444556554 47788888887 44544
|
| >d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glucose-fructose oxidoreductase, N-terminal domain species: Zymomonas mobilis [TaxId: 542]
Probab=97.99 E-value=1.2e-05 Score=73.86 Aligned_cols=115 Identities=13% Similarity=0.151 Sum_probs=77.7
Q ss_pred CcEEEEcccHHHHH-HHHHHHHC-CCeEE-EEeCChHHHHHHHHcc-cCCCCeeccCCHHHHHhhCCCCcEEEEecCCCc
Q psy9637 5 GDIGLIGLAVMGQN-LILNMNDH-GFTVV-AYNRTTAKVDSFLANE-AKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGS 80 (490)
Q Consensus 5 ~~IgiIGlG~MG~~-lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~g-~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~ 80 (490)
-||||||+|.||.. +...+... +++|+ ++|+++++.+.+.++. ....++..++|++++++. ++.|+|++++|+..
T Consensus 34 iriaiIG~G~~~~~~~~~~~~~~~~~~ivav~d~~~~~a~~~~~~~~i~~~~~~~~~d~~ell~~-~~iD~V~I~tp~~~ 112 (221)
T d1h6da1 34 FGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKD-PKIDAVYIILPNSL 112 (221)
T ss_dssp EEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSGGGGGGC-TTCCEEEECSCGGG
T ss_pred EEEEEEcCcHHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhhccccccccccCchhhhccc-ccceeeeeccchhh
Confidence 47999999999975 45555543 66766 8899999999887653 222234457889998864 45799999999975
Q ss_pred hHHHHHHhhcccCCCC-CEEEcC-CCCChHHHHHHHHHHHHccccc
Q psy9637 81 AVDDFIDKLVPLLEKG-DIIIDG-GNSEYQDTDRRSKALEAKGLLY 124 (490)
Q Consensus 81 ~v~~vl~~l~~~l~~g-~iiId~-s~~~~~~~~~~~~~l~~~gi~~ 124 (490)
..+-++..+. .| .++++- -+..+.+..++.+..+++++.+
T Consensus 113 H~~~~~~al~----~gk~v~~EKPla~~~~e~~~l~~~a~~~~~~~ 154 (221)
T d1h6da1 113 HAEFAIRAFK----AGKHVMCEKPMATSVADCQRMIDAAKAANKKL 154 (221)
T ss_dssp HHHHHHHHHH----TTCEEEECSSCCSSHHHHHHHHHHHHHHTCCE
T ss_pred hhhHHHHhhh----cchhhhcCCCccCCHHHHHHHHHHHHhcCCcE
Confidence 5544444332 33 466663 1224567777777777776544
|
| >d1mv8a1 a.100.1.4 (A:203-300) GDP-mannose 6-dehydrogenase, middle domain {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: UDP-glucose/GDP-mannose dehydrogenase dimerisation domain domain: GDP-mannose 6-dehydrogenase, middle domain species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.96 E-value=4.7e-06 Score=66.63 Aligned_cols=92 Identities=12% Similarity=0.084 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhcccchhhHhHhHhHHhhccCcccccccCChhH
Q psy9637 178 KKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGGCIIRSVFLGNIKAAFDKNPALSNLLLDPFF 257 (490)
Q Consensus 178 ~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~~~v~~i~~~g~~~~s~~l~~i~~~~~~~~~~~~~~~~~~f 257 (490)
.|+++|++.|++.+..++..+|...++++. |+|..++.+++.....+. .....+.|++
T Consensus 3 ~AEl~K~~~N~~~a~kIsf~Nel~~lc~~~------g~d~~~v~~~~~~d~ri~----------------~~~~~~~pG~ 60 (98)
T d1mv8a1 3 VAEMIKYTCNVWHAAKVTFANEIGNIAKAV------GVDGREVMDVICQDHKLN----------------LSRYYMRPGF 60 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------TSCHHHHHHHHTTCTTTT----------------TSSTTCSCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------hhhHHHHHHHHhcCcccc----------------ccccccCCcc
Confidence 689999999999999999999999999999 999999999985432110 0011223443
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHH
Q psy9637 258 KDAIHATQSSWRAVVSQSALLGIPTPAFATALAF 291 (490)
Q Consensus 258 ~~~l~~~~kDl~~~~~~A~~~gv~~P~~~aa~~~ 291 (490)
+..-.++.||+..+...+++.+++.++++++.+.
T Consensus 61 G~GG~ClpKD~~al~~~a~~~~~~~~ll~~~~~~ 94 (98)
T d1mv8a1 61 AFGGSCLPKDVRALTYRASQLDVEHPMLGSLMRS 94 (98)
T ss_dssp CCCSSSHHHHHHHHHHHHHHTTCCCTTGGGHHHH
T ss_pred cCCccccchhHHHHHHHHHHcCCChHHHHHHHHH
Confidence 3334568999999999999999999999888764
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=97.90 E-value=2.5e-05 Score=66.59 Aligned_cols=100 Identities=14% Similarity=0.169 Sum_probs=67.7
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHccc-------CCCCeeccCCHHHHHhhCCCCcEEEEec
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGF-TVVAYNRTTAKVDSFLANEA-------KGTNIIGAHSLEELVKNLKKPRRVMMLV 76 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~g~-------~~~~i~~~~s~~e~v~~l~~~dvIil~v 76 (490)
+||+|||+|.+|.++|..|+.++. ++.++|+++++.+.....-. ...++..+.+++++.. +|+|+++.
T Consensus 2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~d~~~~~~----advvvita 77 (142)
T d1uxja1 2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNYADTAN----SDVIVVTS 77 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGGGGTT----CSEEEECC
T ss_pred CeEEEECCCHHHHHHHHHHHhCCcceEEEEeeccccchhHHHHhhccccccCCCCEEEecCcHHHhcC----CCEEEEee
Confidence 589999999999999999998875 89999998877554332110 1224555677776543 89999988
Q ss_pred CCCc---------------hHHHHHHhhcccCCCCCEEEcCCCCChHHHH
Q psy9637 77 KAGS---------------AVDDFIDKLVPLLEKGDIIIDGGNSEYQDTD 111 (490)
Q Consensus 77 p~~~---------------~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~ 111 (490)
.... .+++++..+.++ .|..+++-.+| |-++.
T Consensus 78 g~~~~~~~~r~dl~~~N~~i~~~i~~~i~k~-~p~aivivvtN--PvDv~ 124 (142)
T d1uxja1 78 GAPRKPGMSREDLIKVNADITRACISQAAPL-SPNAVIIMVNN--PLDAM 124 (142)
T ss_dssp SCC---------CHHHHHHHHHHHHHHHGGG-CTTCEEEECSS--SHHHH
T ss_pred eccCCcCcchhHHHhHHHHHHHHHHHHHhcc-CCCceEEEeCC--chHHH
Confidence 4432 133455666665 45677777776 44544
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.90 E-value=2.6e-05 Score=67.02 Aligned_cols=97 Identities=10% Similarity=0.195 Sum_probs=64.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCC--eEEEEeCChHHHHHHHHc---cc--CCCCe-eccCCHHHHHhhCCCCcEEEEe
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGF--TVVAYNRTTAKVDSFLAN---EA--KGTNI-IGAHSLEELVKNLKKPRRVMML 75 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~---g~--~~~~i-~~~~s~~e~v~~l~~~dvIil~ 75 (490)
..||+|||+|.+|..+|..|+.+|. ++.+||+++++++..... .. ....+ ....+.++ ++.+|+|+++
T Consensus 6 ~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~~~----l~daDvvvit 81 (148)
T d1ldna1 6 GARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDD----CRDADLVVIC 81 (148)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGG----TTTCSEEEEC
T ss_pred CCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEEECCHHH----hccceeEEEe
Confidence 3689999999999999999999886 799999998875543221 11 01112 22344433 3448999987
Q ss_pred cCCCc---------------hHHHHHHhhcccCCCCCEEEcCCCC
Q psy9637 76 VKAGS---------------AVDDFIDKLVPLLEKGDIIIDGGNS 105 (490)
Q Consensus 76 vp~~~---------------~v~~vl~~l~~~l~~g~iiId~s~~ 105 (490)
..... .++++.+.+.++- |+.++|-.+|.
T Consensus 82 ag~~~~~~~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~~ivvtNP 125 (148)
T d1ldna1 82 AGANQKPGETRLDLVDKNIAIFRSIVESVMASG-FQGLFLVATNP 125 (148)
T ss_dssp CSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHT-CCSEEEECSSS
T ss_pred cccccccCcchhHHHHHHHHHHHHHHHHHHhhC-CCceEEEecCc
Confidence 74432 2344556666654 66788888773
|
| >d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Diaminopimelic acid dehydrogenase (DAPDH) species: Corynebacterium glutamicum [TaxId: 1718]
Probab=97.84 E-value=1.7e-05 Score=69.63 Aligned_cols=88 Identities=9% Similarity=0.209 Sum_probs=59.0
Q ss_pred CCCCCcEEEEcccHHHHHHHHHHHHC-CCeEE-EEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCC
Q psy9637 1 MAAKGDIGLIGLAVMGQNLILNMNDH-GFTVV-AYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKA 78 (490)
Q Consensus 1 M~~~~~IgiIGlG~MG~~lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~ 78 (490)
|+ ++||||||+|.||..++..|.+. +++++ ++|++++... ........+..++.+ ++|+|++|+|+
T Consensus 1 M~-kirvgiiG~G~ig~~~~~~l~~~~~~elvav~~~~~~~~~--------~~~~~~~~~~~~~~~---~~D~Vvi~tp~ 68 (170)
T d1f06a1 1 MT-NIRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATLDT--------KTPVFDVADVDKHAD---DVDVLFLCMGS 68 (170)
T ss_dssp CC-CEEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCCSS--------SSCEEEGGGGGGTTT---TCSEEEECSCT
T ss_pred CC-cceEEEECChHHHHHHHHHHHhCCCcEEEEEEeccccccc--------ccccccchhhhhhcc---ccceEEEeCCC
Confidence 75 46899999999999999999875 56655 6788865321 112233444444444 49999999999
Q ss_pred CchHHHHHHhhcccCCCCCEEEcCCC
Q psy9637 79 GSAVDDFIDKLVPLLEKGDIIIDGGN 104 (490)
Q Consensus 79 ~~~v~~vl~~l~~~l~~g~iiId~s~ 104 (490)
....+ + ..+.|+.|.-+|++..
T Consensus 69 ~~h~~-~---a~~aL~aG~~vv~~~~ 90 (170)
T d1f06a1 69 ATDIP-E---QAPKFAQFACTVDTYD 90 (170)
T ss_dssp TTHHH-H---HHHHHTTTSEEECCCC
T ss_pred cccHH-H---HHHHHHCCCcEEEecC
Confidence 74333 3 2344667887776543
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=97.83 E-value=4.1e-05 Score=66.53 Aligned_cols=101 Identities=13% Similarity=0.166 Sum_probs=66.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCC--eEEEEeCChHHHHHHHHc---ccC---CCCeeccCCHHHHHhhCCCCcEEEEe
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGF--TVVAYNRTTAKVDSFLAN---EAK---GTNIIGAHSLEELVKNLKKPRRVMML 75 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~---g~~---~~~i~~~~s~~e~v~~l~~~dvIil~ 75 (490)
.+||+|||+|.+|..+|..|+..|. ++.+||+++++++..... ... ...+....+.+++ ..+|+|+++
T Consensus 20 ~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~~~~d~~~~----~~adiVVit 95 (160)
T d1i0za1 20 NNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKDYSVT----ANSKIVVVT 95 (160)
T ss_dssp SSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEEECSSGGGG----TTCSEEEEC
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhccccccCCCeEEeccchhhc----ccccEEEEe
Confidence 4699999999999999999999997 899999998876543211 110 1122234455443 338999987
Q ss_pred cCCCc---------------hHHHHHHhhcccCCCCCEEEcCCCCChHHHH
Q psy9637 76 VKAGS---------------AVDDFIDKLVPLLEKGDIIIDGGNSEYQDTD 111 (490)
Q Consensus 76 vp~~~---------------~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~ 111 (490)
.-... .+++++..+.+. .++.++|-.+| |-+..
T Consensus 96 Ag~~~~~g~tR~~l~~~N~~i~~~i~~~i~~~-~p~aiiivvtN--PvDv~ 143 (160)
T d1i0za1 96 AGVRQQEGESRLNLVQRNVNVFKFIIPQIVKY-SPDCIIIVVSN--PVDIL 143 (160)
T ss_dssp CSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHH-CTTCEEEECSS--SHHHH
T ss_pred cCCccccCcchHHHHHHHHHHHHHHHHHHHhc-CCCcEEEEeCC--chHHH
Confidence 63321 233444555554 56788888887 44443
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=97.79 E-value=3.3e-05 Score=65.69 Aligned_cols=100 Identities=17% Similarity=0.207 Sum_probs=64.0
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC--eEEEEeCChHHHHHHHHc---c--cCCCCeeccCCHHHHHhhCCCCcEEEEecC
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGF--TVVAYNRTTAKVDSFLAN---E--AKGTNIIGAHSLEELVKNLKKPRRVMMLVK 77 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~---g--~~~~~i~~~~s~~e~v~~l~~~dvIil~vp 77 (490)
|||+|||.|.+|..+|..|+.++. ++.++|+++++++..... . ..........+.++ ++.+|+|+++.-
T Consensus 1 mKI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~~~~~~~----~~~adivvitag 76 (140)
T d1a5za1 1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGDYAD----LKGSDVVIVAAG 76 (140)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECCGGG----GTTCSEEEECCC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEecccccccchhccccccccccccccccCCcHHH----hcCCCEEEEecc
Confidence 599999999999999999998874 899999998876643321 1 01111122334443 334899999863
Q ss_pred CCc----h-----------HHHHHHhhcccCCCCCEEEcCCCCChHHHH
Q psy9637 78 AGS----A-----------VDDFIDKLVPLLEKGDIIIDGGNSEYQDTD 111 (490)
Q Consensus 78 ~~~----~-----------v~~vl~~l~~~l~~g~iiId~s~~~~~~~~ 111 (490)
.+. . ++++.+.+.++ .|+.+++..+| |-+..
T Consensus 77 ~~~~~g~~r~dl~~~N~~I~~~i~~~i~~~-~p~aivivvtN--Pvd~~ 122 (140)
T d1a5za1 77 VPQKPGETRLQLLGRNARVMKEIARNVSKY-APDSIVIVVTN--PVDVL 122 (140)
T ss_dssp CCCCSSCCHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEECSS--SHHHH
T ss_pred cccCCCcchhhhhccccchHHHHHHHHHhc-CCCcEEEEeCC--cHHHH
Confidence 321 1 23333455544 46788888887 44443
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=97.78 E-value=2e-05 Score=69.70 Aligned_cols=100 Identities=19% Similarity=0.192 Sum_probs=70.4
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCe--------e------------c-cCCHHHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNI--------I------------G-AHSLEELV 63 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i--------~------------~-~~s~~e~v 63 (490)
-+|.|||.|..|..-++-....|..|++||.++++.+++.+.+.+...+ + . ....+.+.
T Consensus 30 a~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~~~l~ 109 (183)
T d1l7da1 30 ARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAEAVL 109 (183)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHHHHH
T ss_pred cEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHHHHHHH
Confidence 4799999999999999999999999999999999999988765431000 0 0 01122334
Q ss_pred hhCCCCcEEEEec--CCCchHHHHHHhhcccCCCCCEEEcCCC
Q psy9637 64 KNLKKPRRVMMLV--KAGSAVDDFIDKLVPLLEKGDIIIDGGN 104 (490)
Q Consensus 64 ~~l~~~dvIil~v--p~~~~v~~vl~~l~~~l~~g~iiId~s~ 104 (490)
+.++++|+||.++ |...+-.-+-+++...+++|.+|||.+-
T Consensus 110 ~~l~~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIVDvai 152 (183)
T d1l7da1 110 KELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLAV 152 (183)
T ss_dssp HHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEETTG
T ss_pred HHHHhhhhheeeeecCCcccceeehHHHHHhcCCCcEEEEEee
Confidence 4466799999877 3222211122667778999999999864
|
| >d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Acetaldehyde dehydrogenase (acylating) species: Pseudomonas sp. [TaxId: 306]
Probab=97.75 E-value=4.7e-05 Score=65.99 Aligned_cols=98 Identities=17% Similarity=0.127 Sum_probs=62.4
Q ss_pred CCCCCcEEEEcccHHHHH-HHHHHHHCC-CeEE-EEeCChHH-HHHH-HHcccCCCCeeccCCHHHHHhh--CCCCcEEE
Q psy9637 1 MAAKGDIGLIGLAVMGQN-LILNMNDHG-FTVV-AYNRTTAK-VDSF-LANEAKGTNIIGAHSLEELVKN--LKKPRRVM 73 (490)
Q Consensus 1 M~~~~~IgiIGlG~MG~~-lA~~L~~~G-~~V~-v~dr~~~~-~~~l-~~~g~~~~~i~~~~s~~e~v~~--l~~~dvIi 73 (490)
|+.++||||||+|.+|.. +...|.+.. .+++ +.+|+++. ...+ .+.+.. ....+++++.+. .++.|+|+
T Consensus 1 M~kkirvaIIGaG~ig~~~~~~~l~~~~~~el~avas~~~~~~~~~~a~~~~i~----~~~~~~d~l~~~~~~~~iDiVf 76 (157)
T d1nvmb1 1 MNQKLKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVT----TTYAGVEGLIKLPEFADIDFVF 76 (157)
T ss_dssp CCSCEEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCC----EESSHHHHHHHSGGGGGEEEEE
T ss_pred CCCCcEEEEEcCcHHHHHHHHHHHhhCCcceEEEEEecchhccchhhhhhcCCc----ccccceeeeeecccccccCEEE
Confidence 888889999999999986 455555443 3554 56888652 2233 333321 234456666553 23478999
Q ss_pred EecCCCchHHHHHHhhcccCCCCCEEEcCCC
Q psy9637 74 MLVKAGSAVDDFIDKLVPLLEKGDIIIDGGN 104 (490)
Q Consensus 74 l~vp~~~~v~~vl~~l~~~l~~g~iiId~s~ 104 (490)
+++|++..+... .....++.|..|||.|.
T Consensus 77 ~ATpag~h~~~~--~~~~aa~~G~~VID~s~ 105 (157)
T d1nvmb1 77 DATSASAHVQNE--ALLRQAKPGIRLIDLTP 105 (157)
T ss_dssp ECSCHHHHHHHH--HHHHHHCTTCEEEECST
T ss_pred EcCCchhHHHhH--HHHHHHHcCCEEEEccc
Confidence 999987554432 22234578999999986
|
| >d1dlja1 a.100.1.4 (A:197-294) UDP-glucose dehydrogenase (UDPGDH), middle domain {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: UDP-glucose/GDP-mannose dehydrogenase dimerisation domain domain: UDP-glucose dehydrogenase (UDPGDH), middle domain species: Streptococcus pyogenes [TaxId: 1314]
Probab=97.74 E-value=3.5e-05 Score=61.38 Aligned_cols=90 Identities=12% Similarity=0.038 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhcccchhhHhHhHhHHhhccCcccccccCChhH
Q psy9637 178 KKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGGCIIRSVFLGNIKAAFDKNPALSNLLLDPFF 257 (490)
Q Consensus 178 ~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~~~v~~i~~~g~~~~s~~l~~i~~~~~~~~~~~~~~~~~~f 257 (490)
.|+++|++.|++++..++.++|...++++. |+|...+.+.+.....+ .+....|++
T Consensus 3 eAE~~K~~~N~fla~kIsf~Ne~~~lc~~~------g~d~~~v~~~~~~d~~~------------------~~~~~~pg~ 58 (98)
T d1dlja1 3 EAEAVKLFANTYLALRVAYFNELDTYAESR------KLNSHMIIQGISYDDRI------------------GMHYNNPSF 58 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------TCCHHHHHHHHHTSTTT------------------CSSSCCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------hccHHHHHHHHHhcccc------------------CCccccCCC
Confidence 578999999999999999999999999999 99999998887544321 222233433
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHH
Q psy9637 258 KDAIHATQSSWRAVVSQSALLGIPTPAFATALAFYD 293 (490)
Q Consensus 258 ~~~l~~~~kDl~~~~~~A~~~gv~~P~~~aa~~~~~ 293 (490)
+..-.++.||+..++ +.+.|++.++++++.+.=+
T Consensus 59 g~GG~ClpKD~~al~--~~~~~~~~~ll~~~~~~N~ 92 (98)
T d1dlja1 59 GYGGYSLPKDTKQLL--ANYNNIPQTLIEAIVSSNN 92 (98)
T ss_dssp SCCSSHHHHHHHHHH--HHHTTSSCSHHHHHHHHHH
T ss_pred CcccccCcccHHHHH--HHhcCCCcHHHHHHHHHHH
Confidence 333457899999885 5677999999999877643
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=97.74 E-value=7.3e-05 Score=64.23 Aligned_cols=98 Identities=13% Similarity=0.171 Sum_probs=64.2
Q ss_pred CCCcEEEEcccHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHccc-------CCCCeeccCCHHHHHhhCCCCcEEEE
Q psy9637 3 AKGDIGLIGLAVMGQNLILNMNDHGF-TVVAYNRTTAKVDSFLANEA-------KGTNIIGAHSLEELVKNLKKPRRVMM 74 (490)
Q Consensus 3 ~~~~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~g~-------~~~~i~~~~s~~e~v~~l~~~dvIil 74 (490)
+++||+|||+|.+|..+|..|..++. ++.+||+++++.+.....-. ....+....+.+++. .+|+|++
T Consensus 2 p~~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~~~~~~~~~----~advvvi 77 (150)
T d1t2da1 2 PKAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTYDDLA----GADVVIV 77 (150)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCGGGGT----TCSEEEE
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccCCcceeeecchhhhccccCCCcEEEecccccccC----CCcEEEE
Confidence 35799999999999999998888774 79999999877654432110 012233344454443 3899999
Q ss_pred ecCCCc--------------------hHHHHHHhhcccCCCCCEEEcCCCC
Q psy9637 75 LVKAGS--------------------AVDDFIDKLVPLLEKGDIIIDGGNS 105 (490)
Q Consensus 75 ~vp~~~--------------------~v~~vl~~l~~~l~~g~iiId~s~~ 105 (490)
+.-... .++++.+.+.++ .|+.+|+..||-
T Consensus 78 tag~~~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~-~p~aivivvtNP 127 (150)
T d1t2da1 78 TAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKN-CPNAFIIVVTNP 127 (150)
T ss_dssp CCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHH-CTTSEEEECSSS
T ss_pred ecccccCCCCCccccchhHHHHHHHHHHHHHHHHHHhc-CCCeEEEEecCc
Confidence 875321 123333445554 477888888873
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=97.70 E-value=8.2e-05 Score=63.37 Aligned_cols=100 Identities=16% Similarity=0.223 Sum_probs=65.5
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC--eEEEEeCChHHHHHH----HHcc--cCCCCeeccCCHHHHHhhCCCCcEEEEec
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGF--TVVAYNRTTAKVDSF----LANE--AKGTNIIGAHSLEELVKNLKKPRRVMMLV 76 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~--~V~v~dr~~~~~~~l----~~~g--~~~~~i~~~~s~~e~v~~l~~~dvIil~v 76 (490)
.||+|||+|.+|..+|..|+.+|. ++.++|+++++++.. .... .....+...++.++ ++ .+|+|+++.
T Consensus 2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~~~~~~~~-~~---daDvVVita 77 (143)
T d1llda1 2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDPEI-CR---DADMVVITA 77 (143)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCGGG-GT---TCSEEEECC
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccccCCCceeecCCCHHH-hh---CCcEEEEec
Confidence 489999999999999999999986 899999999876542 2110 00123334555554 33 389999987
Q ss_pred CCCc---------------hHHHHHHhhcccCCCCCEEEcCCCCChHHHH
Q psy9637 77 KAGS---------------AVDDFIDKLVPLLEKGDIIIDGGNSEYQDTD 111 (490)
Q Consensus 77 p~~~---------------~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~ 111 (490)
-... .++++...+.++ .++.++|..|| |-+..
T Consensus 78 G~~~~~g~~R~dl~~~N~~i~~~i~~~i~~~-~p~ai~ivvtN--PvDvm 124 (143)
T d1llda1 78 GPRQKPGQSRLELVGATVNILKAIMPNLVKV-APNAIYMLITN--PVDIA 124 (143)
T ss_dssp CCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CTTSEEEECCS--SHHHH
T ss_pred ccccCCCCchhhhhhhhHHHHHHHHHHHHhh-CCCeEEEEeCC--chHHH
Confidence 3321 123334555555 46678888887 44443
|
| >d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Alpha-glucosidase AglA species: Thermotoga maritima [TaxId: 2336]
Probab=97.64 E-value=0.00018 Score=63.01 Aligned_cols=72 Identities=17% Similarity=0.230 Sum_probs=51.5
Q ss_pred CCcEEEEcccHHHHHHH--HHHHHC----CCeEEEEeCChHHHHHHHH-------cccCCCCeeccCCHHHHHhhCCCCc
Q psy9637 4 KGDIGLIGLAVMGQNLI--LNMNDH----GFTVVAYNRTTAKVDSFLA-------NEAKGTNIIGAHSLEELVKNLKKPR 70 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA--~~L~~~----G~~V~v~dr~~~~~~~l~~-------~g~~~~~i~~~~s~~e~v~~l~~~d 70 (490)
.|||+|||.|..|..++ ..|+.. +.+++.+|+++++++.... ......++..+++..+.+.. +|
T Consensus 2 ~mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~i~~~td~~eaL~d---ad 78 (171)
T d1obba1 2 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIID---AD 78 (171)
T ss_dssp CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTT---CS
T ss_pred CcEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCCeEEEEeCChhhcccC---CC
Confidence 57999999999997643 334432 4699999999998764322 11113456678899998877 99
Q ss_pred EEEEecCC
Q psy9637 71 RVMMLVKA 78 (490)
Q Consensus 71 vIil~vp~ 78 (490)
+|++++-.
T Consensus 79 ~Vv~~~~~ 86 (171)
T d1obba1 79 FVINTAMV 86 (171)
T ss_dssp EEEECCCT
T ss_pred eEeeeccc
Confidence 99988644
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=97.64 E-value=7.6e-05 Score=63.50 Aligned_cols=100 Identities=12% Similarity=0.106 Sum_probs=59.3
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC--eEEEEeCChHHHHHHHHcccC----CCCee-ccCCHHHHHhhCCCCcEEEEecC
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGF--TVVAYNRTTAKVDSFLANEAK----GTNII-GAHSLEELVKNLKKPRRVMMLVK 77 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~g~~----~~~i~-~~~s~~e~v~~l~~~dvIil~vp 77 (490)
+||+|||+|.+|..+|..|+.++. ++.+||+++++++.....-.. ..... ...+.++ ++.+|+|+++..
T Consensus 2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~----~~~adivvitag 77 (142)
T d1y6ja1 2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSD----VKDCDVIVVTAG 77 (142)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGGG----GTTCSEEEECCC
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccCcccCCCeeEeeCcHHH----hCCCceEEEecc
Confidence 589999999999999999999886 899999998865433221111 11111 1223333 444899999853
Q ss_pred CCc---------------hHHHHHHhhcccCCCCCEEEcCCCCChHHHH
Q psy9637 78 AGS---------------AVDDFIDKLVPLLEKGDIIIDGGNSEYQDTD 111 (490)
Q Consensus 78 ~~~---------------~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~ 111 (490)
.+. .++++.+.+.++ .|+.++|-.+| |-+..
T Consensus 78 ~~~~~~~~r~~l~~~N~~i~~~i~~~i~~~-~p~ai~ivvtN--Pvdv~ 123 (142)
T d1y6ja1 78 ANRKPGETRLDLAKKNVMIAKEVTQNIMKY-YNHGVILVVSN--PVDII 123 (142)
T ss_dssp C------CHHHHHHHHHHHHHHHHHHHHHH-CCSCEEEECSS--SHHHH
T ss_pred cccCcCcchhHHhhHHHHHHHHHHHHhhcc-CCCceEEEecC--hHHHH
Confidence 221 122333445544 46678888877 44443
|
| >d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]
Probab=97.63 E-value=0.0001 Score=63.66 Aligned_cols=90 Identities=10% Similarity=0.076 Sum_probs=71.6
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
+++.|+|.|..|+.+|.++...|-.|++++++|-++-+..-.|. .+.+.++++.. +|++++++.....+.
T Consensus 24 k~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DPi~alqA~mdGf------~v~~~~~a~~~---aDi~vTaTGn~~vI~- 93 (163)
T d1v8ba1 24 KIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEGF------NVVTLDEIVDK---GDFFITCTGNVDVIK- 93 (163)
T ss_dssp SEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTTC------EECCHHHHTTT---CSEEEECCSSSSSBC-
T ss_pred CEEEEecccccchhHHHHHHhCCCEEEEEecCchhhHHHHhcCC------ccCchhHcccc---CcEEEEcCCCCcccc-
Confidence 58999999999999999999999999999999976544444443 26788888877 999999998754221
Q ss_pred HHHhhcccCCCCCEEEcCCCCC
Q psy9637 85 FIDKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 85 vl~~l~~~l~~g~iiId~s~~~ 106 (490)
.+-+..++.|.||.+.|...
T Consensus 94 --~~h~~~MKdgaIl~N~GHfd 113 (163)
T d1v8ba1 94 --LEHLLKMKNNAVVGNIGHFD 113 (163)
T ss_dssp --HHHHTTCCTTCEEEECSSTT
T ss_pred --HHHHHHhhCCeEEEeccccc
Confidence 34456788999999988644
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.62 E-value=2.1e-05 Score=70.85 Aligned_cols=74 Identities=18% Similarity=0.280 Sum_probs=54.9
Q ss_pred CCCCCcEEEEc-ccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCee--ccCCHHHHHhhCCCCcEEEEecC
Q psy9637 1 MAAKGDIGLIG-LAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNII--GAHSLEELVKNLKKPRRVMMLVK 77 (490)
Q Consensus 1 M~~~~~IgiIG-lG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~--~~~s~~e~v~~l~~~dvIil~vp 77 (490)
|+ |+||.|+| .|..|..++..|+++||+|+++.|++++.+.....+.+ +. -..+++++.+.++.+|+||.++.
T Consensus 1 m~-~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~~~~~~~~~~---~~~gD~~d~~~l~~al~~~d~vi~~~g 76 (205)
T d1hdoa_ 1 MA-VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAH---VVVGDVLQAADVDKTVAGQDAVIVLLG 76 (205)
T ss_dssp CC-CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSSCCCSE---EEESCTTSHHHHHHHHTTCSEEEECCC
T ss_pred CC-CCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhcccccccccc---cccccccchhhHHHHhcCCCEEEEEec
Confidence 74 56899999 69999999999999999999999998875543322211 11 13456666666677999998875
Q ss_pred C
Q psy9637 78 A 78 (490)
Q Consensus 78 ~ 78 (490)
.
T Consensus 77 ~ 77 (205)
T d1hdoa_ 77 T 77 (205)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.62 E-value=6.6e-05 Score=65.14 Aligned_cols=102 Identities=15% Similarity=0.101 Sum_probs=65.3
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC--eEEEEeCChHHHHHHH----HcccC--CCCeeccCCHHHHHhhCCCCcEEEEec
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGF--TVVAYNRTTAKVDSFL----ANEAK--GTNIIGAHSLEELVKNLKKPRRVMMLV 76 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~----~~g~~--~~~i~~~~s~~e~v~~l~~~dvIil~v 76 (490)
.||+|||+|.+|..+|..|+..|+ ++.++|+++++++... ..... ...+....+.+++. .+|+|+++.
T Consensus 20 ~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~~d~~~~~----~adivvita 95 (159)
T d2ldxa1 20 CKITVVGVGDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVFGKDYNVSA----NSKLVIITA 95 (159)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCEEEEESSGGGGT----TEEEEEECC
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcchhcCCCeEEeccchhhhc----cccEEEEec
Confidence 589999999999999999999986 8999999988765332 21111 11233445655543 389998876
Q ss_pred CCCc-----------hHHHHHHhhccc---CCCCCEEEcCCCCChHHHHH
Q psy9637 77 KAGS-----------AVDDFIDKLVPL---LEKGDIIIDGGNSEYQDTDR 112 (490)
Q Consensus 77 p~~~-----------~v~~vl~~l~~~---l~~g~iiId~s~~~~~~~~~ 112 (490)
.... .-..++.++.+. ..++.+++..+| |-+..-
T Consensus 96 g~~~~~~~~R~dll~~N~~i~~~i~~~i~~~~p~~ivivvtN--PvDv~t 143 (159)
T d2ldxa1 96 GARMVSGQTRLDLLQRNVAIMKAIVPGVIQNSPDCKIIVVTN--PVDILT 143 (159)
T ss_dssp SCCCCTTTCSSCTTHHHHHHHHHHTTTHHHHSTTCEEEECSS--SHHHHH
T ss_pred ccccCCCCCHHHHHHHHHHHHHHHHHHHhccCCCeEEEEeCC--cHHHHH
Confidence 3321 011233333332 257888998888 455543
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.61 E-value=0.00026 Score=60.21 Aligned_cols=100 Identities=13% Similarity=0.141 Sum_probs=65.6
Q ss_pred cEEEEcc-cHHHHHHHHHHHHCCC--eEEEEeCChHHHHHHHHcccC-CCC---eeccCCHHHHHhhCCCCcEEEEecCC
Q psy9637 6 DIGLIGL-AVMGQNLILNMNDHGF--TVVAYNRTTAKVDSFLANEAK-GTN---IIGAHSLEELVKNLKKPRRVMMLVKA 78 (490)
Q Consensus 6 ~IgiIGl-G~MG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~g~~-~~~---i~~~~s~~e~v~~l~~~dvIil~vp~ 78 (490)
||+|||+ |.+|.++|..|+..|. ++.++|.++.+.+.+--.... ... .....+..+..+. +|+|+++...
T Consensus 2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~---aDivVitag~ 78 (144)
T d1mlda1 2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKG---CDVVVIPAGV 78 (144)
T ss_dssp EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHHTT---CSEEEECCSC
T ss_pred eEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchhhHHHhhhhhhcCCCeEEcCCChHHHhCC---CCEEEECCCc
Confidence 8999995 9999999999999886 699999988765543221111 011 1122344444444 9999988643
Q ss_pred Cc---------------hHHHHHHhhcccCCCCCEEEcCCCCChHHHH
Q psy9637 79 GS---------------AVDDFIDKLVPLLEKGDIIIDGGNSEYQDTD 111 (490)
Q Consensus 79 ~~---------------~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~ 111 (490)
+. .++++++.+.++ .+..+|+-.+| |-++.
T Consensus 79 ~~~~g~sR~~ll~~N~~i~~~i~~~i~~~-~p~~iiivvtN--PvD~~ 123 (144)
T d1mlda1 79 PRKPGMTRDDLFNTNATIVATLTAACAQH-CPDAMICIISN--PVNST 123 (144)
T ss_dssp CCCTTCCGGGGHHHHHHHHHHHHHHHHHH-CTTSEEEECSS--CHHHH
T ss_pred CCCCCCCcchHHHHHHHHHHHHHHHHHhc-CCCeEEEEecC--chhhh
Confidence 21 245556667666 57788888887 44543
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=97.60 E-value=0.00012 Score=62.46 Aligned_cols=96 Identities=19% Similarity=0.162 Sum_probs=62.6
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC--eEEEEeCChHHHHHHHH----cccC-C-CCeeccCCHHHHHhhCCCCcEEEEec
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGF--TVVAYNRTTAKVDSFLA----NEAK-G-TNIIGAHSLEELVKNLKKPRRVMMLV 76 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~----~g~~-~-~~i~~~~s~~e~v~~l~~~dvIil~v 76 (490)
+||+|||+|.+|..+|..|+.+|. ++.+||+++++++.... .... . .......+.+++ +.+|+|+++.
T Consensus 2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~~~d~~~l----~~adiVVita 77 (146)
T d1hyha1 2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDWAAL----ADADVVISTL 77 (146)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCGGGG----TTCSEEEECC
T ss_pred CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccccccCCccceeccCHHHh----ccccEEEEec
Confidence 589999999999999999998874 89999999987654322 1111 1 112234555543 3389999886
Q ss_pred CCCc-------------------hHHHHHHhhcccCCCCCEEEcCCCC
Q psy9637 77 KAGS-------------------AVDDFIDKLVPLLEKGDIIIDGGNS 105 (490)
Q Consensus 77 p~~~-------------------~v~~vl~~l~~~l~~g~iiId~s~~ 105 (490)
.... .++++...+.+ ..|+.++|-.+|-
T Consensus 78 G~~~~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~-~~p~aivivvtNP 124 (146)
T d1hyha1 78 GNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKE-SGFHGVLVVISNP 124 (146)
T ss_dssp SCGGGTC-------CTTHHHHHHHHHHHHHHHHH-TTCCSEEEECSSS
T ss_pred cccccccccCCccHHHHHHHHHHHHHHHHHHHhh-cCCCeEEEEecCc
Confidence 4321 12233344444 3578889988883
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=97.54 E-value=9.7e-05 Score=64.62 Aligned_cols=112 Identities=20% Similarity=0.121 Sum_probs=74.6
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
++|.|+|.|-.+++++..|.+.|.+|+++||++++.+.+.+.......+.. .+..+.. ...+|+||-|+|.+..- +
T Consensus 19 k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~~ka~~l~~~~~~~~~~~~-~~~~~~~--~~~~dliIN~Tp~G~~~-~ 94 (170)
T d1nyta1 19 LRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQA-LSMDELE--GHEFDLIINATSSGISG-D 94 (170)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGSSEEE-CCSGGGT--TCCCSEEEECCSCGGGT-C
T ss_pred CEEEEECCcHHHHHHHHHhcccceEEEeccchHHHHHHHHHHHhhcccccc-ccccccc--ccccceeecccccCccc-C
Confidence 589999999999999999999999999999999999988765332112222 2333322 23489999999987321 1
Q ss_pred HHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccc
Q psy9637 85 FIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGL 122 (490)
Q Consensus 85 vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi 122 (490)
....-...++++.+|+|.--.. ..|. ..+..+++|.
T Consensus 95 ~~~~~~~~~~~~~~v~D~vY~P-~~T~-ll~~A~~~G~ 130 (170)
T d1nyta1 95 IPAIPSSLIHPGIYCYDMFYQK-GKTP-FLAWCEQRGS 130 (170)
T ss_dssp CCCCCGGGCCTTCEEEESCCCS-SCCH-HHHHHHHTTC
T ss_pred CCCCcHHHhccCcEEEEeecCC-CCCH-HHHHHHHcCC
Confidence 1111123477889999996533 3332 3344555664
|
| >d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Leucine dehydrogenase species: Bacillus sphaericus [TaxId: 1421]
Probab=97.47 E-value=0.00016 Score=66.30 Aligned_cols=109 Identities=18% Similarity=0.216 Sum_probs=81.3
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
++|.|-|.|++|..+|+.|.+.|..|++.|.++..++.+...... ...++.++... +||+++-|--.+...++
T Consensus 40 ~~v~IqG~GnVG~~~a~~L~~~Gakvv~~d~~~~~~~~~~~~~g~-----~~~~~~~~~~~--~cDIl~PcA~~~~I~~~ 112 (230)
T d1leha1 40 LAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGA-----DAVAPNAIYGV--TCDIFAPCALGAVLNDF 112 (230)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCC-----EECCGGGTTTC--CCSEEEECSCSCCBSTT
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEeecccHHHHHHHHHhcCC-----cccCCcccccc--cccEecccccccccChH
Confidence 589999999999999999999999999999999998887764321 24455665543 48999888766655555
Q ss_pred HHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccc
Q psy9637 85 FIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVG 126 (490)
Q Consensus 85 vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld 126 (490)
.+..|. =++|+...|..+. +.+..+.|.++|+.|+.
T Consensus 113 ~~~~l~-----ak~Ive~ANn~~t-~~ea~~~L~~rGI~~iP 148 (230)
T d1leha1 113 TIPQLK-----AKVIAGSADNQLK-DPRHGKYLHELGIVYAP 148 (230)
T ss_dssp HHHHCC-----CSEECCSCSCCBS-SHHHHHHHHHHTCEECC
T ss_pred HhhccC-----ccEEEecccCCCC-CchHHHHHHhhCcEEEe
Confidence 555542 3688888876553 33556778899998753
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.46 E-value=0.00013 Score=62.18 Aligned_cols=34 Identities=21% Similarity=0.341 Sum_probs=30.5
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCC--eEEEEeCChH
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDHGF--TVVAYNRTTA 38 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~G~--~V~v~dr~~~ 38 (490)
|||+|||. |.+|.++|..|+..|. ++.++|++++
T Consensus 1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~ 37 (145)
T d1hyea1 1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHS 37 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGG
T ss_pred CEEEEECCCChHHHHHHHHHHhCCcccccccccchhh
Confidence 58999995 9999999999999984 9999999863
|
| >d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Galactose/lactose metabolism regulatory protein GAL80 species: Yeast (Kluyveromyces lactis) [TaxId: 28985]
Probab=97.38 E-value=0.00045 Score=63.51 Aligned_cols=114 Identities=16% Similarity=0.178 Sum_probs=72.6
Q ss_pred CcEEEEcccHHH----HHHHHHHHH--CCCeEE-EEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecC
Q psy9637 5 GDIGLIGLAVMG----QNLILNMND--HGFTVV-AYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVK 77 (490)
Q Consensus 5 ~~IgiIGlG~MG----~~lA~~L~~--~G~~V~-v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp 77 (490)
+||||||+|.+| ......+.+ .+++|+ ++|+++++.+.+.++... .....+++++++++. +..|+|++++|
T Consensus 17 irvgiIG~G~~~~~~~~~h~~ai~~~~~~~~ivav~d~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~-~~iD~V~i~tp 94 (237)
T d2nvwa1 17 IRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQL-KHATGFDSLESFAQY-KDIDMIVVSVK 94 (237)
T ss_dssp EEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTTC-TTCEEESCHHHHHHC-TTCSEEEECSC
T ss_pred eEEEEEecCccccHHHHHHHHHHHhcCCCeEEEEEEcCCHHHHHHHHHhccc-ccceeecchhhcccc-cccceeeccCC
Confidence 689999999754 444445554 356766 799999999888765321 123457899999875 45899999999
Q ss_pred CCchHHHHHHhhcccC---CCCCEEEcC--CCCChHHHHHHHHHHHHcc
Q psy9637 78 AGSAVDDFIDKLVPLL---EKGDIIIDG--GNSEYQDTDRRSKALEAKG 121 (490)
Q Consensus 78 ~~~~v~~vl~~l~~~l---~~g~iiId~--s~~~~~~~~~~~~~l~~~g 121 (490)
+....+.+...+.... ..-.++++- ++ ...+..++.+.+++++
T Consensus 95 ~~~h~~~~~~al~aG~~~~~~k~V~~EKPla~-~~~e~~~l~~~a~~~~ 142 (237)
T d2nvwa1 95 VPEHYEVVKNILEHSSQNLNLRYLYVEWALAA-SVQQAEELYSISQQRA 142 (237)
T ss_dssp HHHHHHHHHHHHHHSSSCSSCCEEEEESSSSS-SHHHHHHHHHHHHTCT
T ss_pred CcchhhHHHHHHHhcccccCCceEEEeccccC-CHHHHHHHHHHHhhcC
Confidence 8755554444333211 122467763 33 3456666666655553
|
| >d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PF0725 species: Pyrococcus furiosus [TaxId: 2261]
Probab=97.37 E-value=7e-05 Score=61.48 Aligned_cols=103 Identities=19% Similarity=0.262 Sum_probs=75.8
Q ss_pred CcEEEEc----ccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCc
Q psy9637 5 GDIGLIG----LAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGS 80 (490)
Q Consensus 5 ~~IgiIG----lG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~ 80 (490)
++|+||| -++.|..+.++|.+.||+|+..|++.+.+ ..+..+.++.|+-.. +|++++++|+ .
T Consensus 2 KsIAVvGaS~~~~k~g~~v~~~L~~~g~~V~pVnP~~~~i----------~G~~~y~sl~~lp~~---~D~vvi~vp~-~ 67 (116)
T d1y81a1 2 RKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEI----------EGLKCYRSVRELPKD---VDVIVFVVPP-K 67 (116)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEE----------TTEECBSSGGGSCTT---CCEEEECSCH-H
T ss_pred cEEEEEcccCCCCCcHHHHHHHHHHCCCEEEEEccccccc----------cCccccccchhcccc---ceEEEEEeCH-H
Confidence 4799999 47899999999999999988888664321 123467888887665 8999999999 4
Q ss_pred hHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccc
Q psy9637 81 AVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVG 126 (490)
Q Consensus 81 ~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld 126 (490)
.+.++++++...- ...+++..++.. .+..+.+++.|+.++.
T Consensus 68 ~~~~~l~~~~~~g-~k~v~~~~g~~~----~~~~~~a~~~gi~vig 108 (116)
T d1y81a1 68 VGLQVAKEAVEAG-FKKLWFQPGAES----EEIRRFLEKAGVEYSF 108 (116)
T ss_dssp HHHHHHHHHHHTT-CCEEEECTTSCC----HHHHHHHHHHTCEEEC
T ss_pred HHHHHHHHHHhcC-CceEEeccchhh----HHHHHHHHHcCCEEEc
Confidence 7888887776532 346777776643 2345667778887764
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=97.34 E-value=5.5e-05 Score=66.47 Aligned_cols=113 Identities=18% Similarity=0.135 Sum_probs=70.3
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
++|.|+|.|-++.+++..|.+.+-+|++++|++++.+.+.+......++..... .+ ..+..+|+||-|+|.+.. ..
T Consensus 19 k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~~~a~~l~~~~~~~~~~~~~~~-~~--~~~~~~diiIN~tp~g~~-~~ 94 (171)
T d1p77a1 19 QHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYGNIQAVSM-DS--IPLQTYDLVINATSAGLS-GG 94 (171)
T ss_dssp CEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGSCEEEEEG-GG--CCCSCCSEEEECCCC------
T ss_pred CEEEEECCcHHHHHHHHHHcccCceeeeccchHHHHHHHHHHHhhccccchhhh-cc--ccccccceeeeccccccc-cc
Confidence 579999999999999999999889999999999999988765332112222111 11 124568999999998732 22
Q ss_pred HHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccc
Q psy9637 85 FIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGL 122 (490)
Q Consensus 85 vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi 122 (490)
........++++.+++|.-=..|..|. ..+..+++|.
T Consensus 95 ~~~~~~~~~~~~~~~~D~vy~~p~~T~-~l~~A~~~g~ 131 (171)
T d1p77a1 95 TASVDAEILKLGSAFYDMQYAKGTDTP-FIALCKSLGL 131 (171)
T ss_dssp --CCCHHHHHHCSCEEESCCCTTSCCH-HHHHHHHTTC
T ss_pred ccchhhhhhcccceeeeeeccCcccHH-HHHHHHHcCC
Confidence 111111234467888888543343332 2344455554
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=97.23 E-value=0.0001 Score=65.22 Aligned_cols=120 Identities=13% Similarity=0.123 Sum_probs=75.1
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHc----ccCC-C--CeeccCCHHHHHhhCCCCcEEEEec
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGF-TVVAYNRTTAKVDSFLAN----EAKG-T--NIIGAHSLEELVKNLKKPRRVMMLV 76 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~----g~~~-~--~i~~~~s~~e~v~~l~~~dvIil~v 76 (490)
++|.|||.|-+|++++..|.+.|. +++++||++++.+++... +... . .+....+..++...+..+|+||-++
T Consensus 19 k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~diiIN~T 98 (182)
T d1vi2a1 19 KTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASADILTNGT 98 (182)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCSEEEECS
T ss_pred CEEEEECCcHHHHHHHHHHhhcCCceEeeeccchHHHHHHHHHHHHHHhhcCcceEeeecccccchhhhhcccceecccc
Confidence 589999999999999999999987 799999998766654321 1100 0 1122334455555455599999999
Q ss_pred CCCchH--HHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccc
Q psy9637 77 KAGSAV--DDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVG 126 (490)
Q Consensus 77 p~~~~v--~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld 126 (490)
|.+..- .+.+..-...++++.+++|..-. |..|. ..+..+..|..+++
T Consensus 99 p~G~~~~~~~~~~~~~~~~~~~~~v~Di~Y~-p~~T~-ll~~a~~~g~~~i~ 148 (182)
T d1vi2a1 99 KVGMKPLENESLVNDISLLHPGLLVTECVYN-PHMTK-LLQQAQQAGCKTID 148 (182)
T ss_dssp STTSTTSCSCCSCCCGGGSCTTCEEEECCCS-SSSCH-HHHHHHTTTCEEEC
T ss_pred CCccccccchhhhhHHHhhhcchhhHHhhcC-ccccH-HHHHHHHCcCeEec
Confidence 976321 01110012356789999999643 33332 33445666765544
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.22 E-value=0.0012 Score=57.15 Aligned_cols=116 Identities=15% Similarity=0.092 Sum_probs=74.7
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhC-----CCCcEEEEecCC
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGF-TVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNL-----KKPRRVMMLVKA 78 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l-----~~~dvIil~vp~ 78 (490)
.+|.|+|+|.+|...+.-+...|. +|++.|+++++.+...+.|+........+++.+..+.+ ..+|+||-|+..
T Consensus 28 d~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~Dvvid~~G~ 107 (171)
T d1pl8a2 28 HKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIECTGA 107 (171)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEECSCC
T ss_pred CEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCcccccccccccccccccccccCCCCceEEEeccCC
Confidence 479999999999999999999998 79999999999998887765410011134555544322 247999999987
Q ss_pred CchHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccccc
Q psy9637 79 GSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYV 125 (490)
Q Consensus 79 ~~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~l 125 (490)
... ++.....++++-.++-.+.......... ..+..+++.++
T Consensus 108 ~~~----~~~a~~~~~~gG~iv~~G~~~~~~~~~~-~~~~~k~l~i~ 149 (171)
T d1pl8a2 108 EAS----IQAGIYATRSGGTLVLVGLGSEMTTVPL-LHAAIREVDIK 149 (171)
T ss_dssp HHH----HHHHHHHSCTTCEEEECSCCCSCCCCCH-HHHHHTTCEEE
T ss_pred chh----HHHHHHHhcCCCEEEEEecCCCCCccCH-HHHHHCCcEEE
Confidence 433 3444445666766666665432222222 23334555554
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=97.21 E-value=0.00041 Score=54.68 Aligned_cols=48 Identities=15% Similarity=0.241 Sum_probs=38.9
Q ss_pred CCCCCcEEEEcccHHH-HHHHHHHHHCCCeEEEEeCC-hHHHHHHHHccc
Q psy9637 1 MAAKGDIGLIGLAVMG-QNLILNMNDHGFTVVAYNRT-TAKVDSFLANEA 48 (490)
Q Consensus 1 M~~~~~IgiIGlG~MG-~~lA~~L~~~G~~V~v~dr~-~~~~~~l~~~g~ 48 (490)
|...++|=|||.|-.| +++|+.|.+.||+|+++|+. ...++.+.+.|.
T Consensus 5 ~~~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~~~~~~~L~~~Gi 54 (96)
T d1p3da1 5 MRRVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADGVVTQRLAQAGA 54 (96)
T ss_dssp CTTCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCSHHHHHHHHTTC
T ss_pred chhCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCCChhhhHHHHCCC
Confidence 4455789999999999 77899999999999999986 445666666554
|
| >d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Archaeal alanine dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.18 E-value=0.00026 Score=68.38 Aligned_cols=94 Identities=15% Similarity=0.114 Sum_probs=70.8
Q ss_pred CcEEEEcccHHHHHHHHHHHHC--CCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDH--GFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAV 82 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~--G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v 82 (490)
.+++|||.|.++...+..|... =.+|.+|+|++++.+.|.+.... ..+....++.+.+.. +|+|++++|+..++
T Consensus 126 ~~l~iiGaG~QA~~~~~al~~~~~i~~i~v~~r~~e~~~~~~~~~~~-~~~~~~~~~~~a~~~---aDiV~taT~s~~P~ 201 (320)
T d1omoa_ 126 SVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCED-RGISASVQPAEEASR---CDVLVTTTPSRKPV 201 (320)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHH-TTCCEEECCHHHHTS---SSEEEECCCCSSCC
T ss_pred cEEEEecCcccHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHh-cCCccccchhhhhcc---ccEEEEeccCcccc
Confidence 5799999999999998887742 24899999999999888764321 123345677777766 99999999987653
Q ss_pred HHHHHhhcccCCCCCEEEcCCCCCh
Q psy9637 83 DDFIDKLVPLLEKGDIIIDGGNSEY 107 (490)
Q Consensus 83 ~~vl~~l~~~l~~g~iiId~s~~~~ 107 (490)
++ ...+++|..|+-.|+..|
T Consensus 202 ---~~--~~~l~~G~hv~~iGs~~p 221 (320)
T d1omoa_ 202 ---VK--AEWVEEGTHINAIGADGP 221 (320)
T ss_dssp ---BC--GGGCCTTCEEEECSCCST
T ss_pred ---cc--hhhcCCCCeEeecCCccc
Confidence 21 135889999999887654
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=97.16 E-value=0.0023 Score=55.01 Aligned_cols=95 Identities=13% Similarity=0.179 Sum_probs=62.6
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCee---ccCCHHHHHhhC-----CCCcEEEEec
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNII---GAHSLEELVKNL-----KKPRRVMMLV 76 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~---~~~s~~e~v~~l-----~~~dvIil~v 76 (490)
.+|.|+|+|.+|...+..+...|.+|++.|+++++.+.+.+.++.. .+. ...+..+..+.+ ..+|+||-++
T Consensus 28 ~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~ga~~-~~~~~~~~~~~~~~~~~~~~~~g~g~D~vid~~ 106 (170)
T d1e3ja2 28 TTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGADV-TLVVDPAKEEESSIIERIRSAIGDLPNVTIDCS 106 (170)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSE-EEECCTTTSCHHHHHHHHHHHSSSCCSEEEECS
T ss_pred CEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHHcCCcE-EEeccccccccchhhhhhhcccccCCceeeecC
Confidence 4799999999999999999999999999999999998887766531 010 112333333222 2368888887
Q ss_pred CCCchHHHHHHhhcccCCCCCEEEcCCC
Q psy9637 77 KAGSAVDDFIDKLVPLLEKGDIIIDGGN 104 (490)
Q Consensus 77 p~~~~v~~vl~~l~~~l~~g~iiId~s~ 104 (490)
...... +.....++++-.++-.|.
T Consensus 107 g~~~~~----~~a~~~~~~~G~iv~~G~ 130 (170)
T d1e3ja2 107 GNEKCI----TIGINITRTGGTLMLVGM 130 (170)
T ss_dssp CCHHHH----HHHHHHSCTTCEEEECSC
T ss_pred CChHHH----HHHHHHHhcCCceEEEec
Confidence 664333 333344556666665554
|
| >d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Ornithine cyclodeaminase species: Pseudomonas putida [TaxId: 303]
Probab=97.10 E-value=0.00025 Score=68.80 Aligned_cols=97 Identities=24% Similarity=0.262 Sum_probs=72.3
Q ss_pred CcEEEEcccHHHHHHHHHHHH-CC-CeEEEEeCChHHHHHHHHcccC--CCCeeccCCHHHHHhhCCCCcEEEEecCCCc
Q psy9637 5 GDIGLIGLAVMGQNLILNMND-HG-FTVVAYNRTTAKVDSFLANEAK--GTNIIGAHSLEELVKNLKKPRRVMMLVKAGS 80 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~-~G-~~V~v~dr~~~~~~~l~~~g~~--~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~ 80 (490)
.+++|||+|.++...+..+.. .+ -+|.+|||++++.++|.+.-.. +..+..++++++++.. +|+|++|+++.
T Consensus 129 ~~l~iiG~G~QA~~~~~a~~~v~~i~~V~v~~r~~~~~~~~~~~l~~~~g~~v~~~~s~~eav~~---ADIi~t~Tas~- 204 (340)
T d1x7da_ 129 RKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRASSVAEAVKG---VDIITTVTADK- 204 (340)
T ss_dssp CEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEECSSHHHHHTT---CSEEEECCCCS-
T ss_pred ceEEEEcccHHHHHHHHHHhhhcceeeeEEEecChHHHHHHHHhhhhccCCCceecCCHHHHHhc---CCceeeccccC-
Confidence 579999999999988887754 23 4799999999999988765322 3456779999999998 99999988653
Q ss_pred hHHHHHHhhcccCCCCCEEEcCCCCCh
Q psy9637 81 AVDDFIDKLVPLLEKGDIIIDGGNSEY 107 (490)
Q Consensus 81 ~v~~vl~~l~~~l~~g~iiId~s~~~~ 107 (490)
....++. ...+++|..|.-.|.-.|
T Consensus 205 s~~Pv~~--~~~l~pG~hI~aiGs~~p 229 (340)
T d1x7da_ 205 AYATIIT--PDMLEPGMHLNAVGGDCP 229 (340)
T ss_dssp SEEEEEC--GGGCCTTCEEEECSCCBT
T ss_pred CCCcccc--hhhcCCCCEEeecccchh
Confidence 1112221 135789998888877554
|
| >d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=97.10 E-value=0.00058 Score=58.56 Aligned_cols=108 Identities=11% Similarity=0.135 Sum_probs=65.7
Q ss_pred CCCCCcEEEEcc-cHHHHHHHHHHHHCCC-------eEEEE--eCChHHHHHHHHcccC-----CCCeeccCCHHHHHhh
Q psy9637 1 MAAKGDIGLIGL-AVMGQNLILNMNDHGF-------TVVAY--NRTTAKVDSFLANEAK-----GTNIIGAHSLEELVKN 65 (490)
Q Consensus 1 M~~~~~IgiIGl-G~MG~~lA~~L~~~G~-------~V~v~--dr~~~~~~~l~~~g~~-----~~~i~~~~s~~e~v~~ 65 (490)
|+..+||+|||+ |.+|.+++..|+..++ ...++ +++.++.+.....-.. ...+...++..+.++.
T Consensus 1 m~~p~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
T d1y7ta1 1 MKAPVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEATDDPKVAFKD 80 (154)
T ss_dssp CCCCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTT
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchhhhhccccccccccccCCchhhhccc
Confidence 776679999996 9999999999997653 12333 4455555543321110 1123445666655555
Q ss_pred CCCCcEEEEecCCC----c-----------hHHHHHHhhcccCCCCCEEEcCCCCChHHHHHH
Q psy9637 66 LKKPRRVMMLVKAG----S-----------AVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRR 113 (490)
Q Consensus 66 l~~~dvIil~vp~~----~-----------~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~ 113 (490)
+|+|+++--.. . .++++...+..+.+++.+|+-.|| |-+..-.
T Consensus 81 ---advViitaG~~~~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvsN--PvDv~t~ 138 (154)
T d1y7ta1 81 ---ADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGN--PANTNAL 138 (154)
T ss_dssp ---CSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS--SHHHHHH
T ss_pred ---ccEEEeecCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEecC--cHHHHHH
Confidence 99999876221 1 233444566666666777777777 5555443
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=97.06 E-value=0.00028 Score=55.11 Aligned_cols=34 Identities=18% Similarity=0.244 Sum_probs=31.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCCh
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTT 37 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~ 37 (490)
.+||.|+|+|..|.+.|+.|.+.|++|++||.++
T Consensus 5 ~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~ 38 (93)
T d2jfga1 5 GKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRM 38 (93)
T ss_dssp TCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSS
T ss_pred CCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCc
Confidence 3589999999999999999999999999999754
|
| >d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Thermotoga maritima [TaxId: 2336]
Probab=97.01 E-value=0.0016 Score=56.18 Aligned_cols=72 Identities=15% Similarity=0.134 Sum_probs=49.2
Q ss_pred CcEEEEcccHHHHHHHHHHH-H-C----CCeEEEEeCChHHHHHHHHcc----cCCCCeeccCCHHHHHhhCCCCcEEEE
Q psy9637 5 GDIGLIGLAVMGQNLILNMN-D-H----GFTVVAYNRTTAKVDSFLANE----AKGTNIIGAHSLEELVKNLKKPRRVMM 74 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~-~-~----G~~V~v~dr~~~~~~~l~~~g----~~~~~i~~~~s~~e~v~~l~~~dvIil 74 (490)
|||+|||.|..|.+++.... + . +.++.++|+++++.+...+.. ....++...++..+.++. +|+|++
T Consensus 1 mKIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~d~~~~~~~~~~~~~~t~~~~~~l~~---aDvVVi 77 (162)
T d1up7a1 1 MRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVLISDTFEGAVVD---AKYVIF 77 (162)
T ss_dssp CEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHTTSSEEEECSSHHHHHTT---CSEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHhcccccCccEEEEEecCcHHHHHHHHHHHhhhccCceEEEecCcccccCC---CCEEEE
Confidence 58999999999887774422 2 1 458999999999877533211 112344556677776666 999999
Q ss_pred ecCCC
Q psy9637 75 LVKAG 79 (490)
Q Consensus 75 ~vp~~ 79 (490)
+.-.+
T Consensus 78 ta~~~ 82 (162)
T d1up7a1 78 QFRPG 82 (162)
T ss_dssp CCCTT
T ss_pred ecccC
Confidence 87543
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=96.96 E-value=0.0028 Score=53.56 Aligned_cols=101 Identities=13% Similarity=0.150 Sum_probs=61.2
Q ss_pred CcEEEEc-ccHHHHHHHHHHHH-C--CCeEEEEeCChHHHHHHHH--cccCCC---CeeccCCHHHHHhhCCCCcEEEEe
Q psy9637 5 GDIGLIG-LAVMGQNLILNMND-H--GFTVVAYNRTTAKVDSFLA--NEAKGT---NIIGAHSLEELVKNLKKPRRVMML 75 (490)
Q Consensus 5 ~~IgiIG-lG~MG~~lA~~L~~-~--G~~V~v~dr~~~~~~~l~~--~g~~~~---~i~~~~s~~e~v~~l~~~dvIil~ 75 (490)
|||+||| .|.+|.++|..|+. . +.++.++|..+.......+ ...... .+...++.++ ++. +|+|+++
T Consensus 1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~~~~g~a~Dl~h~~~~~~~~~~~~~~~~~~-~~~---aDvvvit 76 (145)
T d2cmda1 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATPA-LEG---ADVVLIS 76 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSSTTHHHHHHHHHTSCSSCEEEEECSSCCHHH-HTT---CSEEEEC
T ss_pred CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccccchhHHHHHHCCccccCCcEEEcCCCccc-cCC---CCEEEEC
Confidence 5999999 59999999998864 3 4689999987533222111 111111 1122344443 333 8999998
Q ss_pred cCCCc---------------hHHHHHHhhcccCCCCCEEEcCCCCChHHHHH
Q psy9637 76 VKAGS---------------AVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDR 112 (490)
Q Consensus 76 vp~~~---------------~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~ 112 (490)
--.+. .++++.+.+.++- |+.+||-.+| |-++.-
T Consensus 77 aG~~~k~g~~R~dl~~~N~~i~~~v~~~i~~~~-p~aivivvtN--PvD~m~ 125 (145)
T d2cmda1 77 AGVRRKPGMDRSDLFNVNAGIVKNLVQQVAKTC-PKACIGIITN--PVNTTV 125 (145)
T ss_dssp CSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEECSS--SHHHHH
T ss_pred CCccCCCCcchhhHHHHHHHHHHHHHHHHHhhC-CCcEEEEccC--CchHHH
Confidence 73321 2445556666654 6778888887 455443
|
| >d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Thermotoga maritima [TaxId: 2336]
Probab=96.95 E-value=0.0018 Score=53.57 Aligned_cols=85 Identities=16% Similarity=0.241 Sum_probs=56.8
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCCeEEE-EeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchH
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDHGFTVVA-YNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAV 82 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~G~~V~v-~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v 82 (490)
|||+|+|. |+||+.++..+.+.||++.+ +|++.. ..++.+|+||=-..+ ..+
T Consensus 1 mki~i~G~~GrMG~~i~~~~~~~~~~l~~~id~~~~-------------------------~~~~~~DVvIDFS~p-~~~ 54 (128)
T d1vm6a3 1 MKYGIVGYSGRMGQEIQKVFSEKGHELVLKVDVNGV-------------------------EELDSPDVVIDFSSP-EAL 54 (128)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEETTEE-------------------------EECSCCSEEEECSCG-GGH
T ss_pred CEEEEECCCCHHHHHHHHHHhcCCCeEEEEECCCcH-------------------------HHhccCCEEEEecCH-HHH
Confidence 58999995 99999999999999998774 453311 112337887755444 366
Q ss_pred HHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHH
Q psy9637 83 DDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALE 118 (490)
Q Consensus 83 ~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~ 118 (490)
.+.++.... .+.-+|-++|+...+..+..+.+.
T Consensus 55 ~~~l~~~~~---~~~p~ViGTTG~~~~~~~~i~~~a 87 (128)
T d1vm6a3 55 PKTVDLCKK---YRAGLVLGTTALKEEHLQMLRELS 87 (128)
T ss_dssp HHHHHHHHH---HTCEEEECCCSCCHHHHHHHHHHT
T ss_pred HHHHHHHHh---cCCCEEEEcCCCCHHHHHHHHHHH
Confidence 666655443 456678888887665555555554
|
| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=96.93 E-value=0.0011 Score=51.40 Aligned_cols=44 Identities=16% Similarity=0.175 Sum_probs=37.7
Q ss_pred CcEEEEcccHHHH-HHHHHHHHCCCeEEEEeCCh-HHHHHHHHccc
Q psy9637 5 GDIGLIGLAVMGQ-NLILNMNDHGFTVVAYNRTT-AKVDSFLANEA 48 (490)
Q Consensus 5 ~~IgiIGlG~MG~-~lA~~L~~~G~~V~v~dr~~-~~~~~l~~~g~ 48 (490)
|||=|||.|-+|. ++|+-|.++||.|+++|+.+ +.+++|.+.|.
T Consensus 2 ~~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~~~~t~~L~~~Gi 47 (89)
T d1j6ua1 2 MKIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEETERTAYLRKLGI 47 (89)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTTC
T ss_pred cEEEEEeECHHHHHHHHHHHHhCCCeEEEEeCCCChhHHHHHHCCC
Confidence 6899999999995 79999999999999999876 56667777665
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=96.91 E-value=0.0056 Score=52.55 Aligned_cols=94 Identities=24% Similarity=0.361 Sum_probs=67.5
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
.+|.|+|+|.+|...+.-+...|.++++.++++++.+.+.+.|+. .+.-..+........+..|++|-++.....++.
T Consensus 32 ~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~lGad--~~i~~~~~~~~~~~~~~~D~vid~~g~~~~~~~ 109 (168)
T d1uufa2 32 KKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGAD--EVVNSRNADEMAAHLKSFDFILNTVAAPHNLDD 109 (168)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCS--EEEETTCHHHHHTTTTCEEEEEECCSSCCCHHH
T ss_pred CEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHHhccCCc--EEEECchhhHHHHhcCCCceeeeeeecchhHHH
Confidence 579999999999998888888999999999999988877776653 222344555555555668999999987655555
Q ss_pred HHHhhcccCCCCCEEEcCCC
Q psy9637 85 FIDKLVPLLEKGDIIIDGGN 104 (490)
Q Consensus 85 vl~~l~~~l~~g~iiId~s~ 104 (490)
.++ .+.++-.++..+.
T Consensus 110 ~~~----~l~~~G~iv~~G~ 125 (168)
T d1uufa2 110 FTT----LLKRDGTMTLVGA 125 (168)
T ss_dssp HHT----TEEEEEEEEECCC
T ss_pred HHH----HHhcCCEEEEecc
Confidence 544 3444545555543
|
| >d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Maltose-6'-phosphate glucosidase GlvA species: Bacillus subtilis [TaxId: 1423]
Probab=96.91 E-value=0.0016 Score=56.50 Aligned_cols=72 Identities=17% Similarity=0.102 Sum_probs=49.1
Q ss_pred CCcEEEEcccHHHHHHH-HHHHH--C---CCeEEEEeCChHHHHHHHH---c----ccCCCCeeccCCHHHHHhhCCCCc
Q psy9637 4 KGDIGLIGLAVMGQNLI-LNMND--H---GFTVVAYNRTTAKVDSFLA---N----EAKGTNIIGAHSLEELVKNLKKPR 70 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA-~~L~~--~---G~~V~v~dr~~~~~~~l~~---~----g~~~~~i~~~~s~~e~v~~l~~~d 70 (490)
..||+|||.|..|.+.+ ..+.. . +-+++++|.++++++.... . .....++...++..|.++. +|
T Consensus 3 ~~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eal~~---AD 79 (167)
T d1u8xx1 3 SFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTD---VD 79 (167)
T ss_dssp CEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSS---CS
T ss_pred CceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcceEecCChhhccCC---CC
Confidence 35899999999887633 23332 2 2389999999998763222 1 1113356677888888776 99
Q ss_pred EEEEecCC
Q psy9637 71 RVMMLVKA 78 (490)
Q Consensus 71 vIil~vp~ 78 (490)
+|+++.-.
T Consensus 80 ~Vvitag~ 87 (167)
T d1u8xx1 80 FVMAHIRV 87 (167)
T ss_dssp EEEECCCT
T ss_pred EEEECCCc
Confidence 99999754
|
| >d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=96.89 E-value=0.00019 Score=63.11 Aligned_cols=119 Identities=11% Similarity=0.117 Sum_probs=72.2
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccC--CCCeeccCCHHHHHhhCCCCcEEEEecCCCchH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAK--GTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAV 82 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~--~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v 82 (490)
++|-|||.|-++++++..|.+.| +|++++|++++.+.+.+.... ........+..++...+..+|+||.++|.+..-
T Consensus 19 k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~~~ka~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~dliIn~tp~g~~~ 97 (177)
T d1nvta1 19 KNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSGLDVDLDGVDIIINATPIGMYP 97 (177)
T ss_dssp CEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEECTTCCCTTCCEEEECSCTTCTT
T ss_pred CEEEEECCcHHHHHHHHHHcccc-ceeeehhhhhHHHHHHHHHHHhhchhhhhhhhhhhhhhccchhhhhccCCcccccc
Confidence 57999999999999999998877 999999999999887653211 000000011122222234589999999986321
Q ss_pred HHHHHhh--cccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccc
Q psy9637 83 DDFIDKL--VPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVG 126 (490)
Q Consensus 83 ~~vl~~l--~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld 126 (490)
..-.... ...+.++.+++|..-....+. ..+..++.|...+|
T Consensus 98 ~~~~~~~~~~~~~~~~~~v~D~~y~p~~T~--l~~~a~~~G~~~i~ 141 (177)
T d1nvta1 98 NIDVEPIVKAEKLREDMVVMDLIYNPLETV--LLKEAKKVNAKTIN 141 (177)
T ss_dssp CCSSCCSSCSTTCCSSSEEEECCCSSSSCH--HHHHHHTTTCEEEC
T ss_pred cccccchhhhhccCcccceeeecCCcHhHH--HHHHHHHCCCcccC
Confidence 1111111 123567889999976443332 23344556655544
|
| >d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein TT1466 species: Thermus thermophilus [TaxId: 274]
Probab=96.85 E-value=0.00089 Score=56.14 Aligned_cols=105 Identities=18% Similarity=0.229 Sum_probs=76.8
Q ss_pred CcEEEEcc----cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCc
Q psy9637 5 GDIGLIGL----AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGS 80 (490)
Q Consensus 5 ~~IgiIGl----G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~ 80 (490)
++|+|||+ ++.|..+..+|.+.||++..++.++.. +. -.....+.++.++-.. +|++++++|+ +
T Consensus 14 ksIAVVGaS~~~~k~g~~v~~~L~~~g~~~~~v~~~~~~-~~-------i~g~~~~~~l~~i~~~---iD~v~v~~p~-~ 81 (136)
T d1iuka_ 14 KTIAVLGAHKDPSRPAHYVPRYLREQGYRVLPVNPRFQG-EE-------LFGEEAVASLLDLKEP---VDILDVFRPP-S 81 (136)
T ss_dssp CEEEEETCCSSTTSHHHHHHHHHHHTTCEEEEECGGGTT-SE-------ETTEECBSSGGGCCSC---CSEEEECSCH-H
T ss_pred CeEEEEeecCCCCCchHHHHHHHhcCCCCceEEEecccc-ce-------eeceecccchhhccCC---CceEEEeccH-H
Confidence 47999997 889999999999999999999987531 11 1123457788777554 8999999998 5
Q ss_pred hHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccc
Q psy9637 81 AVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVG 126 (490)
Q Consensus 81 ~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld 126 (490)
.+.++++++... ....+++..|... .+..+.+++.|+.++.
T Consensus 82 ~v~~~v~~~~~~-g~k~i~~q~G~~~----~e~~~~a~~~Gi~vV~ 122 (136)
T d1iuka_ 82 ALMDHLPEVLAL-RPGLVWLQSGIRH----PEFEKALKEAGIPVVA 122 (136)
T ss_dssp HHTTTHHHHHHH-CCSCEEECTTCCC----HHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHHhh-CCCeEEEecCccC----HHHHHHHHHcCCEEEc
Confidence 777788776653 3557787776543 2345667788987763
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=96.84 E-value=0.0005 Score=62.40 Aligned_cols=36 Identities=22% Similarity=0.420 Sum_probs=33.4
Q ss_pred CCCCCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCC
Q psy9637 1 MAAKGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRT 36 (490)
Q Consensus 1 M~~~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~ 36 (490)
|+..+||.|||.|.+|...|..|+++|++|+++||+
T Consensus 3 ~~~~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~ 38 (268)
T d1c0pa1 3 MHSQKRVVVLGSGVIGLSSALILARKGYSVHILARD 38 (268)
T ss_dssp CCCSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCCCCcEEEECccHHHHHHHHHHHHCCCCEEEEeCC
Confidence 556679999999999999999999999999999986
|
| >d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.75 E-value=0.0024 Score=55.47 Aligned_cols=98 Identities=13% Similarity=0.003 Sum_probs=61.9
Q ss_pred CCcEEEEcccHHHH--HHHHHHHHC----CCeEEEEeCChHH--HHHHHH-------cccCCCCeeccCCHHHHHhhCCC
Q psy9637 4 KGDIGLIGLAVMGQ--NLILNMNDH----GFTVVAYNRTTAK--VDSFLA-------NEAKGTNIIGAHSLEELVKNLKK 68 (490)
Q Consensus 4 ~~~IgiIGlG~MG~--~lA~~L~~~----G~~V~v~dr~~~~--~~~l~~-------~g~~~~~i~~~~s~~e~v~~l~~ 68 (490)
+|||.|||.|..|. .++..+... +-+++.+|+++++ .+.+.. ......++..+++..+.++.
T Consensus 1 k~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~td~~~al~g--- 77 (169)
T d1s6ya1 1 RLKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDG--- 77 (169)
T ss_dssp CEEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTT---
T ss_pred CcEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcCCCceeeecCCchhhcCC---
Confidence 36999999997764 344444432 2389999998754 333221 00112345567787777666
Q ss_pred CcEEEEecCCCch-----------------------------------HHHHHHhhcccCCCCCEEEcCCCC
Q psy9637 69 PRRVMMLVKAGSA-----------------------------------VDDFIDKLVPLLEKGDIIIDGGNS 105 (490)
Q Consensus 69 ~dvIil~vp~~~~-----------------------------------v~~vl~~l~~~l~~g~iiId~s~~ 105 (490)
+|+|+++...+.. ++++++.+..+ .|+.++|..||-
T Consensus 78 aDvVv~ta~~~~~~~~~r~~~i~~~~gi~~~~t~g~~~~~~~~~n~~i~~~i~~~i~~~-~pda~~i~vtNP 148 (169)
T d1s6ya1 78 ADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEEL-CPDAWLINFTNP 148 (169)
T ss_dssp CSEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEECSSS
T ss_pred CCEEEEccccCCCCCeehhhhhhhhcCceeccccCcchhhhccccHHHHHHHHHHHhhc-CCCeEEEEeCCh
Confidence 9999999865421 34444555554 588999999884
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=96.73 E-value=0.0059 Score=51.54 Aligned_cols=100 Identities=13% Similarity=0.185 Sum_probs=62.0
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHccc-CCCCe-ec-cCCHHHHH-hhCCCCcEEEEecCCC
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEA-KGTNI-IG-AHSLEELV-KNLKKPRRVMMLVKAG 79 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~-~~~~i-~~-~~s~~e~v-~~l~~~dvIil~vp~~ 79 (490)
+..|-|+|.|.+|..++..|.+.|++|++.|.++++.....+... .+..+ .. .++++-+- ..++++|.|+++++++
T Consensus 3 knHiII~G~g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~~~vi~Gd~~d~~~L~~a~i~~a~~vi~~~~~d 82 (153)
T d1id1a_ 3 KDHFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSDND 82 (153)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECSSCH
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhcCCcEEEEccCcchHHHHHhccccCCEEEEccccH
Confidence 346999999999999999999999999999999876444332211 11111 11 23333332 2367799999999886
Q ss_pred chHHHHHHhhcccCCCC-CEEEcCCC
Q psy9637 80 SAVDDFIDKLVPLLEKG-DIIIDGGN 104 (490)
Q Consensus 80 ~~v~~vl~~l~~~l~~g-~iiId~s~ 104 (490)
.....++. ....+.+. .+|+-..+
T Consensus 83 ~~n~~~~~-~~r~~~~~~~iia~~~~ 107 (153)
T d1id1a_ 83 ADNAFVVL-SAKDMSSDVKTVLAVSD 107 (153)
T ss_dssp HHHHHHHH-HHHHHTSSSCEEEECSS
T ss_pred HHHHHHHH-HHHHhCCCCceEEEEcC
Confidence 43333322 22233333 56666544
|
| >d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PH1109 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.69 E-value=0.0016 Score=54.80 Aligned_cols=103 Identities=16% Similarity=0.210 Sum_probs=74.8
Q ss_pred CcEEEEcc----cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCc
Q psy9637 5 GDIGLIGL----AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGS 80 (490)
Q Consensus 5 ~~IgiIGl----G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~ 80 (490)
++|+|||+ ++.|..+..+|.++||+|+..|+.... + ..+..+.+++|+-.. +|++++++|+ +
T Consensus 20 ksIAVVGaS~~~~~~g~~v~~~L~~~g~~v~pVnP~~~~---i-------~G~~~~~sl~dlp~~---iD~v~i~vp~-~ 85 (139)
T d2d59a1 20 KKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKYEE---V-------LGRKCYPSVLDIPDK---IEVVDLFVKP-K 85 (139)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSE---E-------TTEECBSSGGGCSSC---CSEEEECSCH-H
T ss_pred CeEEEEeecCCCCCchHHHHHHHHHCCCEEEEECCcccc---c-------CCCcccccccccCcc---ceEEEEEeCH-H
Confidence 47999995 689999999999999999888875321 1 123467888887655 8999999998 5
Q ss_pred hHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccc
Q psy9637 81 AVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVG 126 (490)
Q Consensus 81 ~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld 126 (490)
.+.++++++... ....+++..|... .+..+.+.++|+.++.
T Consensus 86 ~~~~~~~e~~~~-g~k~v~~~~G~~~----ee~~~~a~~~gi~vig 126 (139)
T d2d59a1 86 LTMEYVEQAIKK-GAKVVWFQYNTYN----REASKKADEAGLIIVA 126 (139)
T ss_dssp HHHHHHHHHHHH-TCSEEEECTTCCC----HHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHh-CCCEEEEeccccC----HHHHHHHHHCCCEEEc
Confidence 888888887754 3445666666543 2344566777887764
|
| >d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.65 E-value=0.00034 Score=58.33 Aligned_cols=83 Identities=19% Similarity=0.221 Sum_probs=61.2
Q ss_pred CcEEEEcc----cHHHHHHHHHHHHCC-CeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCC
Q psy9637 5 GDIGLIGL----AVMGQNLILNMNDHG-FTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAG 79 (490)
Q Consensus 5 ~~IgiIGl----G~MG~~lA~~L~~~G-~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~ 79 (490)
++|+|||. +++|..+.++|.+.| ++|+..|+..+.+ ..+..+.|+.|+-.. +|++++++|+
T Consensus 9 ksIAVVGaS~~~~~~g~~v~~~L~~~~~g~v~pVnP~~~~i----------~G~~~y~sl~dlp~~---vDlvvi~vp~- 74 (129)
T d2csua1 9 KGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKEEEV----------QGVKAYKSVKDIPDE---IDLAIIVVPK- 74 (129)
T ss_dssp SEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSCSEE----------TTEECBSSTTSCSSC---CSEEEECSCH-
T ss_pred CeEEEEccCCCCCCcHHHHHHHHHHcCCCcEEEeccCcccc----------CCeEeecchhhcCCC---CceEEEecCh-
Confidence 57999996 899999999998776 6888888764321 123467888887655 8999999998
Q ss_pred chHHHHHHhhcccCCCCCEEEc
Q psy9637 80 SAVDDFIDKLVPLLEKGDIIID 101 (490)
Q Consensus 80 ~~v~~vl~~l~~~l~~g~iiId 101 (490)
+.+.++++++...--+..+++.
T Consensus 75 ~~~~~~~~~~~~~g~~~~vi~s 96 (129)
T d2csua1 75 RFVKDTLIQCGEKGVKGVVIIT 96 (129)
T ss_dssp HHHHHHHHHHHHHTCCEEEECC
T ss_pred HHhHHHHHHHHHcCCCEEEEec
Confidence 5888888887764334334443
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=96.63 E-value=0.0018 Score=56.10 Aligned_cols=111 Identities=14% Similarity=0.168 Sum_probs=70.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchH
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGF-TVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAV 82 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v 82 (490)
.++|.|||.|-++++++..|.+.|. +|++++|++++.+.+.+.... ....+.. ...+|+||-|+|-+-.-
T Consensus 17 ~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~~ka~~L~~~~~~----~~~~~~~-----~~~~DliINaTpiGm~~ 87 (167)
T d1npya1 17 NAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGY----AYINSLE-----NQQADILVNVTSIGMKG 87 (167)
T ss_dssp TSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTC----EEESCCT-----TCCCSEEEECSSTTCTT
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccHHHHHHHHHhhhh----hhhhccc-----ccchhhheeccccCCcc
Confidence 3579999999999999999999997 799999999999988764321 1111111 12489999999865210
Q ss_pred --HHHHHhh-cccCCCCCEEEcCCCCChHHHHHHHHHHHHcccccc
Q psy9637 83 --DDFIDKL-VPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYV 125 (490)
Q Consensus 83 --~~vl~~l-~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~l 125 (490)
++.--.+ ...++++.+|+|.--.. ..|. ..+..+++|...+
T Consensus 88 ~~~~~~l~~~~~~~~~~~~v~D~vY~P-~~T~-ll~~A~~~G~~~i 131 (167)
T d1npya1 88 GKEEMDLAFPKAFIDNASVAFDVVAMP-VETP-FIRYAQARGKQTI 131 (167)
T ss_dssp STTTTSCSSCHHHHHHCSEEEECCCSS-SSCH-HHHHHHHTTCEEE
T ss_pred ccccccccccHhhcCCcceEEEEeecc-CCCH-HHHHHHHCCCeEE
Confidence 0000000 01234677889986543 3333 3445566665443
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=96.58 E-value=0.0058 Score=51.35 Aligned_cols=99 Identities=14% Similarity=0.110 Sum_probs=60.3
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCC--eEEEEeCCh--HHHH----HHHHccc-C-CCCeeccCCHHHHHhhCCCCcEEE
Q psy9637 5 GDIGLIG-LAVMGQNLILNMNDHGF--TVVAYNRTT--AKVD----SFLANEA-K-GTNIIGAHSLEELVKNLKKPRRVM 73 (490)
Q Consensus 5 ~~IgiIG-lG~MG~~lA~~L~~~G~--~V~v~dr~~--~~~~----~l~~~g~-~-~~~i~~~~s~~e~v~~l~~~dvIi 73 (490)
.||+||| .|.+|..+|..|..+|. ++.++|++. ++.+ .+..... . ..++ ...+++++ ..+|+|+
T Consensus 1 sKV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~~~~~~~i-~~~~~~~~----~~aDiVv 75 (142)
T d1o6za1 1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRV-RQGGYEDT----AGSDVVV 75 (142)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEE-EECCGGGG----TTCSEEE
T ss_pred CeEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhcccccCCceE-eeCCHHHh----hhcCEEE
Confidence 4899999 69999999999999986 799999653 3332 2221101 1 1122 24555554 3489999
Q ss_pred EecCCC----c-----------hHHHHHHhhcccCCCCCEEEcCCCCChHHHH
Q psy9637 74 MLVKAG----S-----------AVDDFIDKLVPLLEKGDIIIDGGNSEYQDTD 111 (490)
Q Consensus 74 l~vp~~----~-----------~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~ 111 (490)
++.-.+ . .++++.+.+..+ .++.+++-.+| |-+..
T Consensus 76 itaG~~~~~g~~R~dl~~~N~~I~~~i~~~i~~~-~p~~i~ivvtN--PvDvm 125 (142)
T d1o6za1 76 ITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEH-NDDYISLTTSN--PVDLL 125 (142)
T ss_dssp ECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTT-CSCCEEEECCS--SHHHH
T ss_pred EecccccccCCchhhHHHHHHHHHHHHHHHHHhc-CCCceEEEecC--hHHHH
Confidence 875321 1 123333455544 46778888877 44543
|
| >d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Biliverdin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.53 E-value=0.00025 Score=61.89 Aligned_cols=111 Identities=11% Similarity=0.174 Sum_probs=65.7
Q ss_pred CCCcEEEEcccHHHHHHHHHHHHCC--CeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCc
Q psy9637 3 AKGDIGLIGLAVMGQNLILNMNDHG--FTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGS 80 (490)
Q Consensus 3 ~~~~IgiIGlG~MG~~lA~~L~~~G--~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~ 80 (490)
.+++|||||+|.||...+..|.+.. ..+.+++....+ .+... ..+ ...+.+++++. +.+|+|++++|+..
T Consensus 6 ~k~kv~iIG~G~~g~~h~~~l~~~~~~~~~~~~~~~~~~--~~~~~----~~~-~~~~~~e~l~~-~~iD~V~I~tp~~~ 77 (172)
T d1lc0a1 6 GKFGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRR--ELGSL----DEV-RQISLEDALRS-QEIDVAYICSESSS 77 (172)
T ss_dssp CSEEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECSS--CCCEE----TTE-EBCCHHHHHHC-SSEEEEEECSCGGG
T ss_pred CCcEEEEEcCCHHHHHHHHHHHhCCCCcEEEEEeccchH--HHHHh----hcc-CcCCHHHHHhC-CCcchhhhcccccc
Confidence 3578999999999999988876532 223344322111 11100 111 35688998875 45799999999975
Q ss_pred hHHHHHHhhcccCCCCCEEEcCC-CCChHHHHHHHHHHHHccccc
Q psy9637 81 AVDDFIDKLVPLLEKGDIIIDGG-NSEYQDTDRRSKALEAKGLLY 124 (490)
Q Consensus 81 ~v~~vl~~l~~~l~~g~iiId~s-~~~~~~~~~~~~~l~~~gi~~ 124 (490)
.. +++...++. .-.++++-- .....+..++.+...++|..+
T Consensus 78 H~-~~~~~al~~--gk~V~~EKP~a~~~~e~~~l~~~a~~~~~~~ 119 (172)
T d1lc0a1 78 HE-DYIRQFLQA--GKHVLVEYPMTLSFAAAQELWELAAQKGRVL 119 (172)
T ss_dssp HH-HHHHHHHHT--TCEEEEESCSCSCHHHHHHHHHHHHHTTCCE
T ss_pred cc-ccccccccc--chhhhcCCCccccHHHHHHHHHHHHHcCCeE
Confidence 54 443333332 113666631 223577777777777777543
|
| >d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Escherichia coli [TaxId: 562]
Probab=96.46 E-value=0.0032 Score=54.28 Aligned_cols=73 Identities=21% Similarity=0.290 Sum_probs=58.0
Q ss_pred CcEEEEcccH-HHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 5 GDIGLIGLAV-MGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 5 ~~IgiIGlG~-MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
++|.|||-+. +|.+++..|.+.|..|++++.. +.++.+.+.+ +|+||.++.....+.
T Consensus 38 K~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~-------------------t~~l~~~~~~---ADivI~a~G~p~~i~ 95 (166)
T d1b0aa1 38 LNAVVIGASNIVGRPMSMELLLAGCTTTVTHRF-------------------TKNLRHHVEN---ADLLIVAVGKPGFIP 95 (166)
T ss_dssp CEEEEECCCTTTHHHHHHHHHTTTCEEEEECSS-------------------CSCHHHHHHH---CSEEEECSCCTTCBC
T ss_pred ceEEEEeccccccHHHHHHHHHhhccccccccc-------------------cchhHHHHhh---hhHhhhhccCccccc
Confidence 5899999876 9999999999999999998754 3455666666 899999997653321
Q ss_pred HHHHhhcccCCCCCEEEcCCCC
Q psy9637 84 DFIDKLVPLLEKGDIIIDGGNS 105 (490)
Q Consensus 84 ~vl~~l~~~l~~g~iiId~s~~ 105 (490)
...+++|.+|||.|..
T Consensus 96 ------~~~vk~g~vvIDvGi~ 111 (166)
T d1b0aa1 96 ------GDWIKEGAIVIDVGIN 111 (166)
T ss_dssp ------TTTSCTTCEEEECCCE
T ss_pred ------ccccCCCcEEEecCce
Confidence 2357899999999875
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.41 E-value=0.00099 Score=57.61 Aligned_cols=95 Identities=13% Similarity=0.163 Sum_probs=60.8
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHh-hCCCCcEEEEecCCCchHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVK-NLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~-~l~~~dvIil~vp~~~~v~ 83 (490)
.+|.|+|.|.+|...+..+...|.+|++.|+++++.+.+.+.|+. .+....+..+..+ ..+..|+|+.++......
T Consensus 29 ~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~lGa~--~~i~~~~~~~~~~~~~~~~d~vi~~~~~~~~~- 105 (168)
T d1piwa2 29 KKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGAD--HYIATLEEGDWGEKYFDTFDLIVVCASSLTDI- 105 (168)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCS--EEEEGGGTSCHHHHSCSCEEEEEECCSCSTTC-
T ss_pred CEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhhccCCc--EEeeccchHHHHHhhhcccceEEEEecCCccc-
Confidence 579999999999988887778899999999999999988877753 1111111222222 223468888877654221
Q ss_pred HHHHhhcccCCCCCEEEcCC
Q psy9637 84 DFIDKLVPLLEKGDIIIDGG 103 (490)
Q Consensus 84 ~vl~~l~~~l~~g~iiId~s 103 (490)
.++.....++++-.++..|
T Consensus 106 -~~~~~~~~l~~~G~iv~~G 124 (168)
T d1piwa2 106 -DFNIMPKAMKVGGRIVSIS 124 (168)
T ss_dssp -CTTTGGGGEEEEEEEEECC
T ss_pred -hHHHHHHHhhccceEEEec
Confidence 1233344455554555555
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=96.40 E-value=0.0072 Score=49.47 Aligned_cols=93 Identities=14% Similarity=0.195 Sum_probs=61.7
Q ss_pred cEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeec-cCCHHHHHh--hCCCCcEEEEecCCCchH
Q psy9637 6 DIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIG-AHSLEELVK--NLKKPRRVMMLVKAGSAV 82 (490)
Q Consensus 6 ~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~-~~s~~e~v~--~l~~~dvIil~vp~~~~v 82 (490)
.|-|+|.|.+|..++..| +|++|.+.+.++++.+.+...+.. -+.+ .+++ +... .+++++.++++.+++...
T Consensus 2 HivI~G~g~~g~~l~~~L--~~~~i~vi~~d~~~~~~~~~~~~~--~i~Gd~~~~-~~L~~a~i~~A~~vi~~~~~d~~n 76 (129)
T d2fy8a1 2 HVVICGWSESTLECLREL--RGSEVFVLAEDENVRKKVLRSGAN--FVHGDPTRV-SDLEKANVRGARAVIVNLESDSET 76 (129)
T ss_dssp CEEEESCCHHHHHHHHTS--CGGGEEEEESCTTHHHHHHHTTCE--EEESCTTSH-HHHHHTTCTTCSEEEECCSSHHHH
T ss_pred EEEEECCCHHHHHHHHHH--cCCCCEEEEcchHHHHHHHhcCcc--ccccccCCH-HHHHHhhhhcCcEEEEeccchhhh
Confidence 477999999999999999 467889999999999988776542 1112 2233 4443 367899999998885333
Q ss_pred HHHHHhhcccCCCC-CEEEcCCC
Q psy9637 83 DDFIDKLVPLLEKG-DIIIDGGN 104 (490)
Q Consensus 83 ~~vl~~l~~~l~~g-~iiId~s~ 104 (490)
..++. ....+.|. .+++-..+
T Consensus 77 ~~~~~-~~r~~~~~~~iia~~~~ 98 (129)
T d2fy8a1 77 IHCIL-GIRKIDESVRIIAEAER 98 (129)
T ss_dssp HHHHH-HHHHHCSSSCEEEECSS
T ss_pred HHHHH-HHHHHCCCceEEEEEcC
Confidence 22322 22333344 56666654
|
| >d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=96.31 E-value=0.0034 Score=53.12 Aligned_cols=95 Identities=19% Similarity=0.216 Sum_probs=55.1
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCC-C---eEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCC
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDHG-F---TVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAG 79 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~G-~---~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~ 79 (490)
+||||||. |.+|.-+.+.|.++. | +++.+..+...-.... ............+..++ .. +|++|+++|++
T Consensus 2 kkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~~~-~~~~~~~~~~~~~~~~~-~~---~DivF~a~~~~ 76 (146)
T d1t4ba1 2 QNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPS-FGGTTGTLQDAFDLEAL-KA---LDIIVTCQGGD 76 (146)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCG-GGTCCCBCEETTCHHHH-HT---CSEEEECSCHH
T ss_pred cEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeecccccccccc-ccCCceeeecccchhhh-hc---CcEEEEecCch
Confidence 48999996 999999998887653 3 4555655432211111 11101111122333333 33 89999999985
Q ss_pred chHHHHHHhhcccCCCCCEEEcCCCCC
Q psy9637 80 SAVDDFIDKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 80 ~~v~~vl~~l~~~l~~g~iiId~s~~~ 106 (490)
........+... ..+.+|||.|+.+
T Consensus 77 -~s~~~~~~~~~~-g~~~~VID~Ss~f 101 (146)
T d1t4ba1 77 -YTNEIYPKLRES-GWQGYWIDAASSL 101 (146)
T ss_dssp -HHHHHHHHHHHT-TCCCEEEECSSTT
T ss_pred -HHHHhhHHHHhc-CCCeecccCCccc
Confidence 455555554432 2335899998864
|
| >d1mv8a3 c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase, GDP-binding domain {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain domain: GDP-mannose 6-dehydrogenase, GDP-binding domain species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.31 E-value=0.0056 Score=50.87 Aligned_cols=95 Identities=15% Similarity=0.159 Sum_probs=65.6
Q ss_pred CCcEEEEccc----------HHHHHHHHHHHHCCCeEEEEeCChHHHH-------HHHHcccCCCCeeccCCHHHHHhhC
Q psy9637 4 KGDIGLIGLA----------VMGQNLILNMNDHGFTVVAYNRTTAKVD-------SFLANEAKGTNIIGAHSLEELVKNL 66 (490)
Q Consensus 4 ~~~IgiIGlG----------~MG~~lA~~L~~~G~~V~v~dr~~~~~~-------~l~~~g~~~~~i~~~~s~~e~v~~l 66 (490)
..||+|+|+- .-...++..|.+.|++|.+||+.-+..+ .+..... ......++++.++++.
T Consensus 13 ~kkI~ilGlafK~~t~D~R~Sps~~li~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~e~i~~- 90 (136)
T d1mv8a3 13 TRKVGLLGLSFKAGTDDLRESPLVELAEMLIGKGYELRIFDRNVEYARVHGANKEYIESKIP-HVSSLLVSDLDEVVAS- 90 (136)
T ss_dssp CCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECHHHHHHTTSSSCHHHHHHTSH-HHHTTBCSCHHHHHHH-
T ss_pred CCEEEEEEEEECCCCcchhcCHHHHHHHHHhhhhccccccCCCCCHHHHhhhhhhhhhhccc-cccceeehhhhhhhhh-
Confidence 3689999984 5677899999999999999997432211 1111000 0012247899999998
Q ss_pred CCCcEEEEecCCCchHHHHHHhhcccCCCCCEEEcCCCCCh
Q psy9637 67 KKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEY 107 (490)
Q Consensus 67 ~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~s~~~~ 107 (490)
+|+|+++++.. ..+++ ...+.++.+|+|+-+..+
T Consensus 91 --~D~ivi~t~h~-~f~~l----~~~~~~~~~I~D~~~~~~ 124 (136)
T d1mv8a3 91 --SDVLVLGNGDE-LFVDL----VNKTPSGKKLVDLVGFMP 124 (136)
T ss_dssp --CSEEEECSCCG-GGHHH----HHSCCTTCEEEESSSCCS
T ss_pred --ceEEEEEeCCH-HHHHH----HHHhcCCCEEEECCCCCC
Confidence 99999999985 44443 334567899999988664
|
| >d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.29 E-value=0.0049 Score=53.40 Aligned_cols=74 Identities=18% Similarity=0.177 Sum_probs=58.4
Q ss_pred CcEEEEcccH-HHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 5 GDIGLIGLAV-MGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 5 ~~IgiIGlG~-MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
++|.|||-+. +|.++|..|.+.|..|++++.. ..++.+.+.+ +|+|+.++....-++
T Consensus 40 k~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~-------------------t~~l~~~~~~---aDivi~a~G~~~~i~ 97 (170)
T d1a4ia1 40 RHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSK-------------------TAHLDEEVNK---GDILVVATGQPEMVK 97 (170)
T ss_dssp CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT-------------------CSSHHHHHTT---CSEEEECCCCTTCBC
T ss_pred ceEEEEecCCccchHHHHHHHhccCceEEEecc-------------------cccHHHHHhh---ccchhhccccccccc
Confidence 5799999865 9999999999999999999864 2344555555 899999998763322
Q ss_pred HHHHhhcccCCCCCEEEcCCCCC
Q psy9637 84 DFIDKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 84 ~vl~~l~~~l~~g~iiId~s~~~ 106 (490)
...+++|.+|||.+.+.
T Consensus 98 ------~~~vk~g~iviDvgi~~ 114 (170)
T d1a4ia1 98 ------GEWIKPGAIVIDCGINY 114 (170)
T ss_dssp ------GGGSCTTCEEEECCCBC
T ss_pred ------cccccCCCeEeccCccc
Confidence 23678999999999865
|
| >d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=96.21 E-value=0.01 Score=51.72 Aligned_cols=35 Identities=9% Similarity=0.212 Sum_probs=27.8
Q ss_pred CcEEEEcccHHHHHHHHHHHHCC-CeEEEE-eCChHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHG-FTVVAY-NRTTAK 39 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G-~~V~v~-dr~~~~ 39 (490)
-||||.|.|++|+.+.+.+.++. ++|+.. |+++..
T Consensus 2 IKVaINGfGRIGR~v~Ral~~~~dievVaInd~~~~~ 38 (178)
T d1b7go1 2 VNVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNY 38 (178)
T ss_dssp EEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSH
T ss_pred eEEEEECCCHHHHHHHHHHHhCCCCEEEEEECCCCcH
Confidence 58999999999999999999764 677654 565543
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=96.20 E-value=0.0063 Score=48.77 Aligned_cols=73 Identities=11% Similarity=0.037 Sum_probs=46.3
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHH-HHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAK-VDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~-~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
++|.|||.|..|..-++.|.+.|.+|++++..... ...+.+.+.. .-+....+.++ ++..++|+.+..+. .+.
T Consensus 13 k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~~~~~~~~~~~~~i-~~~~~~~~~~d----l~~~~lv~~at~d~-~~n 86 (113)
T d1pjqa1 13 RDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFTVWANEGML-TLVEGPFDETL----LDSCWLAIAATDDD-TVN 86 (113)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCCHHHHHHHTTTSC-EEEESSCCGGG----GTTCSEEEECCSCH-HHH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCChHHHHHHhcCCc-eeeccCCCHHH----hCCCcEEeecCCCH-HHH
Confidence 68999999999999999999999999999876443 2233322110 00111122333 33378888776654 444
|
| >d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.20 E-value=0.0058 Score=51.97 Aligned_cols=105 Identities=15% Similarity=0.099 Sum_probs=64.3
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHHCCC-------eEEEEeCChH--HHHHHHH---cccC--CCCeeccCCHHHHHhhCCC
Q psy9637 4 KGDIGLIGL-AVMGQNLILNMNDHGF-------TVVAYNRTTA--KVDSFLA---NEAK--GTNIIGAHSLEELVKNLKK 68 (490)
Q Consensus 4 ~~~IgiIGl-G~MG~~lA~~L~~~G~-------~V~v~dr~~~--~~~~l~~---~g~~--~~~i~~~~s~~e~v~~l~~ 68 (490)
.+||.|||+ |.+|.++|..|+..+. ++..+|.++. +.+.+.- .... ...+....+..+..++
T Consensus 3 p~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 79 (154)
T d5mdha1 3 PIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFKD--- 79 (154)
T ss_dssp CEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEEEEEESCHHHHTTT---
T ss_pred ceEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhhhhhhhhcccccccccccccCcccccccCC---
Confidence 469999995 9999999999986542 5778887653 3333321 1111 1134456677776666
Q ss_pred CcEEEEecCCCc---------------hHHHHHHhhcccCCCCCEEEcCCCCChHHHHHH
Q psy9637 69 PRRVMMLVKAGS---------------AVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRR 113 (490)
Q Consensus 69 ~dvIil~vp~~~---------------~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~ 113 (490)
+|+|+++-..+. .++++...+.++.++.-++|..|| |-+..-.
T Consensus 80 ~dvVVitag~~~~~g~sr~dll~~N~~i~k~~~~~i~k~a~~~~~iivvsN--PvD~mt~ 137 (154)
T d5mdha1 80 LDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGN--PANTNCL 137 (154)
T ss_dssp CSEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECSS--SHHHHHH
T ss_pred ceEEEEecccCCCCCCchhHHHHHhHHHHHHHHHHHHhhCCCceEEEEecC--cHHHHHH
Confidence 899998763321 234444566565554455666776 4555443
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=96.20 E-value=0.0069 Score=52.49 Aligned_cols=95 Identities=18% Similarity=0.205 Sum_probs=62.9
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHcccCCCCee-ccCCHHHHHhhC---CCCcEEEEecCCC
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGF-TVVAYNRTTAKVDSFLANEAKGTNII-GAHSLEELVKNL---KKPRRVMMLVKAG 79 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~g~~~~~i~-~~~s~~e~v~~l---~~~dvIil~vp~~ 79 (490)
.+|.|+|+|.+|...+..+...|. +|++.|+++++.+...+.|+. .-+. ...++.+.+.++ ...|+||-++...
T Consensus 29 ~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa~-~~i~~~~~~~~~~v~~~t~g~G~D~vid~~g~~ 107 (174)
T d1jqba2 29 SSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGAT-DILNYKNGHIEDQVMKLTNGKGVDRVIMAGGGS 107 (174)
T ss_dssp CCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTCS-EEECGGGSCHHHHHHHHTTTSCEEEEEECSSCT
T ss_pred CEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCcc-ccccccchhHHHHHHHHhhccCcceEEEccCCH
Confidence 479999999999988888888896 799999999998888877653 1111 123344444333 2368888888775
Q ss_pred chHHHHHHhhcccCCCCCEEEcCCC
Q psy9637 80 SAVDDFIDKLVPLLEKGDIIIDGGN 104 (490)
Q Consensus 80 ~~v~~vl~~l~~~l~~g~iiId~s~ 104 (490)
...++.++- ++++-.++..|.
T Consensus 108 ~~~~~a~~~----~~~~G~iv~~G~ 128 (174)
T d1jqba2 108 ETLSQAVKM----VKPGGIISNINY 128 (174)
T ss_dssp THHHHHHHH----EEEEEEEEECCC
T ss_pred HHHHHHHHH----HhcCCEEEEEee
Confidence 444544443 344555555553
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=96.19 E-value=0.0047 Score=53.76 Aligned_cols=44 Identities=11% Similarity=0.090 Sum_probs=38.5
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHccc
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGF-TVVAYNRTTAKVDSFLANEA 48 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~g~ 48 (490)
.+|.|+|+|.+|...+..+...|. +|++.|+++++.+.+.+.|+
T Consensus 30 ~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa 74 (182)
T d1vj0a2 30 KTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGA 74 (182)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTC
T ss_pred CEEEEECCCccchhheecccccccccccccccccccccccccccc
Confidence 479999999999998888888997 79999999999988777654
|
| >d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Vibrio cholerae [TaxId: 666]
Probab=96.15 E-value=0.0031 Score=53.43 Aligned_cols=95 Identities=16% Similarity=0.173 Sum_probs=54.1
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCC-C---eEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCC
Q psy9637 5 GDIGLIG-LAVMGQNLILNMNDHG-F---TVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAG 79 (490)
Q Consensus 5 ~~IgiIG-lG~MG~~lA~~L~~~G-~---~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~ 79 (490)
||||||| .|..|.-+.+.|.++. | ++..+..+... .+..........+....+... .+. +|+||+|+|++
T Consensus 1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~-gk~~~~~~~~~~~~~~~~~~~-~~~---~DvvF~alp~~ 75 (147)
T d1mb4a1 1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIG-VPAPNFGKDAGMLHDAFDIES-LKQ---LDAVITCQGGS 75 (147)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCS-SBCCCSSSCCCBCEETTCHHH-HTT---CSEEEECSCHH
T ss_pred CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEecccccc-ccccccCCcceeeecccchhh-hcc---ccEEEEecCch
Confidence 5899998 5999999998887653 3 44444332111 000111110111111223333 333 89999999996
Q ss_pred chHHHHHHhhcccCCCCCEEEcCCCCC
Q psy9637 80 SAVDDFIDKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 80 ~~v~~vl~~l~~~l~~g~iiId~s~~~ 106 (490)
...++...+... ....+|||.|..+
T Consensus 76 -~s~~~~~~l~~~-g~~~~VIDlSsdf 100 (147)
T d1mb4a1 76 -YTEKVYPALRQA-GWKGYWIDAASTL 100 (147)
T ss_dssp -HHHHHHHHHHHT-TCCSEEEESSSTT
T ss_pred -HHHHHhHHHHHc-CCceEEEeCCccc
Confidence 566666655442 2235799999864
|
| >d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Thermotoga maritima [TaxId: 2336]
Probab=96.12 E-value=0.01 Score=51.66 Aligned_cols=93 Identities=26% Similarity=0.344 Sum_probs=57.2
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHHCCC-eEEEE-eCChH--HHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCC
Q psy9637 4 KGDIGLIGL-AVMGQNLILNMNDHGF-TVVAY-NRTTA--KVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKA 78 (490)
Q Consensus 4 ~~~IgiIGl-G~MG~~lA~~L~~~G~-~V~v~-dr~~~--~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~ 78 (490)
|+||||+|. |..|.-|.+.|.++-+ ++... .++.. ++........ ........+++++.++ .|++++++|.
T Consensus 1 MikVaIvGATGyvG~eLirlL~~HP~~ei~~l~s~~~aG~~i~~~~p~~~-~~~~~~~~~~~~~~~~---~dvvf~a~p~ 76 (176)
T d1vkna1 1 MIRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPSTL-ENSILSEFDPEKVSKN---CDVLFTALPA 76 (176)
T ss_dssp CEEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHHHHCGGGC-CCCBCBCCCHHHHHHH---CSEEEECCST
T ss_pred CeEEEEECCCcHHHHHHHHHHHhCCCceEEEeeccccCCCcccccCchhh-ccccccccCHhHhccc---cceEEEcccc
Confidence 479999995 9999999999988643 44433 22211 1111111111 1111224566777666 8999999999
Q ss_pred CchHHHHHHhhcccCCCCCEEEcCCCCC
Q psy9637 79 GSAVDDFIDKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 79 ~~~v~~vl~~l~~~l~~g~iiId~s~~~ 106 (490)
+.. .+.+ +.. ++..|||.|.-+
T Consensus 77 ~~s-~~~~----~~~-~~~~VIDlSadf 98 (176)
T d1vkna1 77 GAS-YDLV----REL-KGVKIIDLGADF 98 (176)
T ss_dssp THH-HHHH----TTC-CSCEEEESSSTT
T ss_pred HHH-HHHH----Hhh-ccceEEecCccc
Confidence 743 3332 222 678999999865
|
| >d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Usg-1 protein homolog PA3116 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.96 E-value=0.0017 Score=54.84 Aligned_cols=92 Identities=9% Similarity=0.110 Sum_probs=54.8
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHHCCC---eEEEEeCChHHHHHHHHcccCCCCeeccCCHH-HHHhhCCCCcEEEEecCC
Q psy9637 4 KGDIGLIGL-AVMGQNLILNMNDHGF---TVVAYNRTTAKVDSFLANEAKGTNIIGAHSLE-ELVKNLKKPRRVMMLVKA 78 (490)
Q Consensus 4 ~~~IgiIGl-G~MG~~lA~~L~~~G~---~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~-e~v~~l~~~dvIil~vp~ 78 (490)
.|+|||||. |..|.-+.+.|.+++| ++..+..+...-+.+. .. ...+. ..+++ +... .+|++|+++|.
T Consensus 2 ~mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~Gk~i~-~~--~~~~~-~~~~~~~~~~---~~d~vf~a~p~ 74 (144)
T d2hjsa1 2 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMG-FA--ESSLR-VGDVDSFDFS---SVGLAFFAAAA 74 (144)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEE-ET--TEEEE-CEEGGGCCGG---GCSEEEECSCH
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCCccee-ec--cccch-hccchhhhhc---cceEEEecCCc
Confidence 479999986 9999999999987665 4554433222111110 00 01111 11222 1223 38999999998
Q ss_pred CchHHHHHHhhcccCCCCCEEEcCCCCC
Q psy9637 79 GSAVDDFIDKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 79 ~~~v~~vl~~l~~~l~~g~iiId~s~~~ 106 (490)
+ ...+....+ ..+|.+|||.|+.+
T Consensus 75 ~-~s~~~~~~~---~~~g~~VID~Ss~f 98 (144)
T d2hjsa1 75 E-VSRAHAERA---RAAGCSVIDLSGAL 98 (144)
T ss_dssp H-HHHHHHHHH---HHTTCEEEETTCTT
T ss_pred c-hhhhhcccc---ccCCceEEeechhh
Confidence 5 444444444 35789999998854
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=95.94 E-value=0.013 Score=51.33 Aligned_cols=42 Identities=14% Similarity=0.133 Sum_probs=36.9
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHc
Q psy9637 5 GDIGLIG-LAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLAN 46 (490)
Q Consensus 5 ~~IgiIG-lG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~ 46 (490)
++|-|.| .|.+|..+|+.|++.|.+|++.+|++++.+.+.+.
T Consensus 24 K~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~ 66 (191)
T d1luaa1 24 KKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADS 66 (191)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHhhccchhhcccchHHHHHHHHH
Confidence 4677777 79999999999999999999999999988876653
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.79 E-value=0.0094 Score=50.78 Aligned_cols=44 Identities=18% Similarity=0.194 Sum_probs=39.5
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHccc
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEA 48 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~ 48 (490)
.+|.|+|.|.+|...+.-+...|.+|++.|+++++.+.+.+.|+
T Consensus 29 ~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~~Ga 72 (166)
T d1llua2 29 QWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELARKLGA 72 (166)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTC
T ss_pred CEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhhccCc
Confidence 57999999999999888888899999999999999988877665
|
| >d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Probab=95.68 E-value=0.029 Score=48.52 Aligned_cols=104 Identities=10% Similarity=0.099 Sum_probs=64.5
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCC-------eEEEEeCChH--HHHHHHH---cccC--CCCeeccCCHHHHHhhCCCC
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDHGF-------TVVAYNRTTA--KVDSFLA---NEAK--GTNIIGAHSLEELVKNLKKP 69 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~G~-------~V~v~dr~~~--~~~~l~~---~g~~--~~~i~~~~s~~e~v~~l~~~ 69 (490)
.||.|+|+ |.+|.+++.+|+.... .+..+|.+.. +++.+.- .... ...+...++..+..+. +
T Consensus 25 ~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~a~~~~~~~~~~~~~~~~~~~---a 101 (175)
T d7mdha1 25 VNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEVFED---V 101 (175)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTT---C
T ss_pred cEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhhhhcccccccccCccccccchhhccC---C
Confidence 47999996 9999999999997532 5667787653 3333221 1110 1133456676666665 9
Q ss_pred cEEEEecCCCc---------------hHHHHHHhhcccCCCCCEEEcCCCCChHHHHHH
Q psy9637 70 RRVMMLVKAGS---------------AVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRR 113 (490)
Q Consensus 70 dvIil~vp~~~---------------~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~ 113 (490)
|+||+.-.... .++++.+.+.++-+++.+|+-.|| |-++...
T Consensus 102 DvVvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~N--Pvd~~t~ 158 (175)
T d7mdha1 102 DWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGN--PCNTNAL 158 (175)
T ss_dssp SEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS--SHHHHHH
T ss_pred ceEEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEecC--cHHHHHH
Confidence 99998863221 133444566666666777777777 5555544
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=95.65 E-value=0.0038 Score=56.84 Aligned_cols=33 Identities=12% Similarity=0.308 Sum_probs=31.2
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCCh
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTT 37 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~ 37 (490)
|+|.|||.|.-|...|..|+++|++|+++++++
T Consensus 1 m~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~ 33 (347)
T d2ivda1 1 MNVAVVGGGISGLAVAHHLRSRGTDAVLLESSA 33 (347)
T ss_dssp CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence 589999999999999999999999999999874
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=95.56 E-value=0.029 Score=51.34 Aligned_cols=82 Identities=17% Similarity=0.250 Sum_probs=54.8
Q ss_pred CcEEEE-c-ccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEe--cCCCc
Q psy9637 5 GDIGLI-G-LAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMML--VKAGS 80 (490)
Q Consensus 5 ~~IgiI-G-lG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~--vp~~~ 80 (490)
+||.+| | .+-+|..+|+.|++.|++|++.+|++++++++.++-. +. ..+++.+. +.+.+
T Consensus 1 KKValITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~---------------~~--g~~~~~~~~Dv~~~~ 63 (255)
T d1gega_ 1 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEIN---------------QA--GGHAVAVKVDVSDRD 63 (255)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH---------------HT--TCCEEEEECCTTSHH
T ss_pred CCEEEEcCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH---------------hc--CCcEEEEEeeCCCHH
Confidence 478777 4 5679999999999999999999999998877654211 10 02333322 33444
Q ss_pred hHHHHHHhhcccCCCCCEEEcCC
Q psy9637 81 AVDDFIDKLVPLLEKGDIIIDGG 103 (490)
Q Consensus 81 ~v~~vl~~l~~~l~~g~iiId~s 103 (490)
.++++++.+.....+=|++|+..
T Consensus 64 ~v~~~~~~~~~~~g~iDilVnnA 86 (255)
T d1gega_ 64 QVFAAVEQARKTLGGFDVIVNNA 86 (255)
T ss_dssp HHHHHHHHHHHHTTCCCEEEECC
T ss_pred HHHHHHHHHHHHhCCccEEEecc
Confidence 56666777666555557777654
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=95.51 E-value=0.0047 Score=56.04 Aligned_cols=35 Identities=26% Similarity=0.465 Sum_probs=32.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChH
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTA 38 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~ 38 (490)
.+||.|||.|.-|..+|..|+++|++|++++++++
T Consensus 4 ~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~ 38 (265)
T d2voua1 4 TDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQ 38 (265)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 36899999999999999999999999999998753
|
| >d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Salmonella typhimurium [TaxId: 90371]
Probab=95.45 E-value=0.0077 Score=52.43 Aligned_cols=97 Identities=12% Similarity=0.177 Sum_probs=56.6
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHHC-CCeEEE-EeCC--hH---HHHHHHHc--ccCCCCeeccCCHHHHHhhCCCCcEEE
Q psy9637 4 KGDIGLIG-LAVMGQNLILNMNDH-GFTVVA-YNRT--TA---KVDSFLAN--EAKGTNIIGAHSLEELVKNLKKPRRVM 73 (490)
Q Consensus 4 ~~~IgiIG-lG~MG~~lA~~L~~~-G~~V~v-~dr~--~~---~~~~l~~~--g~~~~~i~~~~s~~e~v~~l~~~dvIi 73 (490)
|+||+||| .|..|.-|.+.|.++ .+++.. +-++ .. +....... +.....+....+...... ..|++|
T Consensus 1 MikVaIiGATGyvG~eLlrlL~~HP~~ei~~l~~~s~~~~aGk~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~dvvf 77 (179)
T d2g17a1 1 MLNTLIVGASGYAGAELVSYVNRHPHMTITALTVSAQSNDAGKLISDLHPQLKGIVDLPLQPMSDVRDFSA---DVDVVF 77 (179)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTCBHHHHCGGGTTTCCCBEEEESCGGGTCT---TCCEEE
T ss_pred CcEEEEECcccHHHHHHHHHHHhCCCCceEeeEeecccccccccccccccccccccccccccchhhhhhhc---ccceee
Confidence 47999999 699999999999997 556643 3221 11 12111111 000111122233333323 389999
Q ss_pred EecCCCchHHHHHHhhcccCCCCCEEEcCCCCCh
Q psy9637 74 MLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEY 107 (490)
Q Consensus 74 l~vp~~~~v~~vl~~l~~~l~~g~iiId~s~~~~ 107 (490)
+++|++ ...+....+ +.++..|||.|.-+-
T Consensus 78 ~alp~~-~s~~~~~~~---~~~~~~vIDlSadfR 107 (179)
T d2g17a1 78 LATAHE-VSHDLAPQF---LQAGCVVFDLSGAFR 107 (179)
T ss_dssp ECSCHH-HHHHHHHHH---HHTTCEEEECSSTTS
T ss_pred ccccch-hHHHHhhhh---hhcCceeeccccccc
Confidence 999986 444444433 347899999998653
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=95.44 E-value=0.0052 Score=58.62 Aligned_cols=37 Identities=16% Similarity=0.176 Sum_probs=33.4
Q ss_pred CCCCCcEEEEcccHHHHHHHHHHHHCC--CeEEEEeCCh
Q psy9637 1 MAAKGDIGLIGLAVMGQNLILNMNDHG--FTVVAYNRTT 37 (490)
Q Consensus 1 M~~~~~IgiIGlG~MG~~lA~~L~~~G--~~V~v~dr~~ 37 (490)
|..++||+|||.|.-|..+|..|++.| ++|++|+++.
T Consensus 1 m~~~KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~ 39 (335)
T d2gv8a1 1 LPTIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRG 39 (335)
T ss_dssp CCSCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSS
T ss_pred CCCCCeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCC
Confidence 777789999999999999999998876 6999999985
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=95.43 E-value=0.017 Score=49.62 Aligned_cols=82 Identities=11% Similarity=0.098 Sum_probs=54.0
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCe-EEEEeCChHHHHHHHHcccCCCCee-ccCCHHHHHhhCC--CCcEEEEecCCCc
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFT-VVAYNRTTAKVDSFLANEAKGTNII-GAHSLEELVKNLK--KPRRVMMLVKAGS 80 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~-V~v~dr~~~~~~~l~~~g~~~~~i~-~~~s~~e~v~~l~--~~dvIil~vp~~~ 80 (490)
.+|.|+|+|.+|...+..+...|.. |++.|+++++.+.+.+.|... -+. ...++.+.+.++. ..|+||-|+....
T Consensus 30 ~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga~~-~i~~~~~~~~~~i~~~t~gg~D~vid~~G~~~ 108 (174)
T d1f8fa2 30 SSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATH-VINSKTQDPVAAIKEITDGGVNFALESTGSPE 108 (174)
T ss_dssp CEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSE-EEETTTSCHHHHHHHHTTSCEEEEEECSCCHH
T ss_pred CEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCCeE-EEeCCCcCHHHHHHHHcCCCCcEEEEcCCcHH
Confidence 4799999999999999888888875 567799999998887766531 110 1123444443332 3688888887653
Q ss_pred hHHHHHH
Q psy9637 81 AVDDFID 87 (490)
Q Consensus 81 ~v~~vl~ 87 (490)
..+..++
T Consensus 109 ~~~~~~~ 115 (174)
T d1f8fa2 109 ILKQGVD 115 (174)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 3343333
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=95.42 E-value=0.032 Score=50.73 Aligned_cols=83 Identities=18% Similarity=0.170 Sum_probs=54.1
Q ss_pred CCCCCcEEEE-c-ccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCC
Q psy9637 1 MAAKGDIGLI-G-LAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKA 78 (490)
Q Consensus 1 M~~~~~IgiI-G-lG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~ 78 (490)
|+-+-|+.+| | .+-+|..+|+.|++.|++|++.+|++++++++.+... ...+.+=+.+
T Consensus 1 M~L~gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~~~l~~~~~~~~--------------------~~~~~~Dv~~ 60 (242)
T d1ulsa_ 1 MRLKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAVG--------------------AHPVVMDVAD 60 (242)
T ss_dssp CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTT--------------------CEEEECCTTC
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcC--------------------CeEEEEecCC
Confidence 5433355555 5 5679999999999999999999999988877654311 1122222334
Q ss_pred CchHHHHHHhhcccCCCCCEEEcCC
Q psy9637 79 GSAVDDFIDKLVPLLEKGDIIIDGG 103 (490)
Q Consensus 79 ~~~v~~vl~~l~~~l~~g~iiId~s 103 (490)
.+.++++++.+.....+=|++|+..
T Consensus 61 ~~~v~~~~~~~~~~~g~iDilVnnA 85 (242)
T d1ulsa_ 61 PASVERGFAEALAHLGRLDGVVHYA 85 (242)
T ss_dssp HHHHHHHHHHHHHHHSSCCEEEECC
T ss_pred HHHHHHHHHHHHHhcCCceEEEECC
Confidence 4456666666655544456777654
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=95.42 E-value=0.0058 Score=58.71 Aligned_cols=73 Identities=12% Similarity=0.143 Sum_probs=47.3
Q ss_pred CCCCCcEEEEc-ccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCee--ccCCHHHHHhhCCCCcEEEEec
Q psy9637 1 MAAKGDIGLIG-LAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNII--GAHSLEELVKNLKKPRRVMMLV 76 (490)
Q Consensus 1 M~~~~~IgiIG-lG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~--~~~s~~e~v~~l~~~dvIil~v 76 (490)
|++.|||-|.| .|.+|..++..|.++||+|+++|+.+..... .. ....++. -..+.+++...++.+|.|+-+.
T Consensus 12 ~~~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~~~~~~--~~-~~~~~~~~~D~~~~~~~~~~~~~~d~Vih~a 87 (363)
T d2c5aa1 12 PSENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMT--ED-MFCDEFHLVDLRVMENCLKVTEGVDHVFNLA 87 (363)
T ss_dssp TTSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSC--GG-GTCSEEEECCTTSHHHHHHHHTTCSEEEECC
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCCccchh--hh-cccCcEEEeechhHHHHHHHhhcCCeEeecc
Confidence 66679999997 7999999999999999999999875332100 00 0000111 1234555555555678777655
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=95.40 E-value=0.0076 Score=48.39 Aligned_cols=35 Identities=20% Similarity=0.396 Sum_probs=32.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChH
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTA 38 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~ 38 (490)
.+||||+|.|..|+-|+....+.|++|.++|++++
T Consensus 11 ~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~ 45 (111)
T d1kjqa2 11 ATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYAD 45 (111)
T ss_dssp CCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred CCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence 36899999999999999999999999999998865
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.36 E-value=0.037 Score=50.41 Aligned_cols=83 Identities=11% Similarity=0.102 Sum_probs=56.2
Q ss_pred cEEEE-cc-cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEE--EecCCCch
Q psy9637 6 DIGLI-GL-AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVM--MLVKAGSA 81 (490)
Q Consensus 6 ~IgiI-Gl-G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIi--l~vp~~~~ 81 (490)
|+.+| |. +-+|..+|+.|+++|++|++.||++++++++.++- .+ . ..++.. +=+.+.+.
T Consensus 8 kv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~l~~~~~~~------------~~---~--~~~~~~~~~Dvs~~~~ 70 (244)
T d1yb1a_ 8 EIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKC------------KG---L--GAKVHTFVVDCSNRED 70 (244)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH------------HH---T--TCCEEEEECCTTCHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH------------Hh---c--CCcEEEEEeeCCCHHH
Confidence 45555 65 56999999999999999999999999888776431 11 0 123333 23344445
Q ss_pred HHHHHHhhcccCCCCCEEEcCCCC
Q psy9637 82 VDDFIDKLVPLLEKGDIIIDGGNS 105 (490)
Q Consensus 82 v~~vl~~l~~~l~~g~iiId~s~~ 105 (490)
++.+++.+.....+=+++|+....
T Consensus 71 v~~~~~~i~~~~g~idilinnag~ 94 (244)
T d1yb1a_ 71 IYSSAKKVKAEIGDVSILVNNAGV 94 (244)
T ss_dssp HHHHHHHHHHHTCCCSEEEECCCC
T ss_pred HHHHHHHHHHHcCCCceeEeeccc
Confidence 667777776666666787776543
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=95.35 E-value=0.026 Score=51.92 Aligned_cols=77 Identities=21% Similarity=0.309 Sum_probs=49.6
Q ss_pred CCCcEEEEc-ccHHHHHHHHHHHHCCCeEEEEeCChH-----HHHHHHHcccCCCCeec--cCCHHHHHhhCCCCcEEEE
Q psy9637 3 AKGDIGLIG-LAVMGQNLILNMNDHGFTVVAYNRTTA-----KVDSFLANEAKGTNIIG--AHSLEELVKNLKKPRRVMM 74 (490)
Q Consensus 3 ~~~~IgiIG-lG~MG~~lA~~L~~~G~~V~v~dr~~~-----~~~~l~~~g~~~~~i~~--~~s~~e~v~~l~~~dvIil 74 (490)
.++||.|+| .|.+|..++..|.++||+|++.+|++. +.+.+......+..+.. ..+...+.+.+...+.++.
T Consensus 2 ~k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~v~~v~~d~~d~~~~~~~~~~~~~~~~ 81 (312)
T d1qyda_ 2 KKSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVDVVIS 81 (312)
T ss_dssp CCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCSEEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCcccchhHHHHHhhhccCCcEEEEeecccchhhhhhccCcchhhh
Confidence 467899999 599999999999999999999998643 22222211110111111 2355555555566788877
Q ss_pred ecCCC
Q psy9637 75 LVKAG 79 (490)
Q Consensus 75 ~vp~~ 79 (490)
+++..
T Consensus 82 ~~~~~ 86 (312)
T d1qyda_ 82 ALAGG 86 (312)
T ss_dssp CCCCS
T ss_pred hhhhc
Confidence 77553
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=95.33 E-value=0.017 Score=53.06 Aligned_cols=81 Identities=12% Similarity=0.245 Sum_probs=55.2
Q ss_pred cEEEE--cccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEe--cCCCch
Q psy9637 6 DIGLI--GLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMML--VKAGSA 81 (490)
Q Consensus 6 ~IgiI--GlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~--vp~~~~ 81 (490)
||++| |.+-+|..+|+.|+++|++|++.+|++++++++.++- .+ . ..++..+. +.+.+.
T Consensus 3 KValITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l------------~~---~--g~~~~~~~~Dvs~~~~ 65 (257)
T d2rhca1 3 EVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKEL------------RE---A--GVEADGRTCDVRSVPE 65 (257)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH------------HH---T--TCCEEEEECCTTCHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH------------Hh---c--CCcEEEEEeecCCHHH
Confidence 68777 5677999999999999999999999998887765421 11 0 02333322 234456
Q ss_pred HHHHHHhhcccCCCCCEEEcCC
Q psy9637 82 VDDFIDKLVPLLEKGDIIIDGG 103 (490)
Q Consensus 82 v~~vl~~l~~~l~~g~iiId~s 103 (490)
++.+++.+.....+=|++|+..
T Consensus 66 v~~~~~~~~~~~g~iDilVnnA 87 (257)
T d2rhca1 66 IEALVAAVVERYGPVDVLVNNA 87 (257)
T ss_dssp HHHHHHHHHHHTCSCSEEEECC
T ss_pred HHHHHHHHHHHhCCCCEEEecc
Confidence 7777777766555557777653
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.29 E-value=0.025 Score=51.80 Aligned_cols=79 Identities=10% Similarity=0.198 Sum_probs=52.9
Q ss_pred cEEEE-c-ccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 6 DIGLI-G-LAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 6 ~IgiI-G-lG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
|+.+| | .+-+|..+|+.|+++|++|++.||++++++.+.++... +..+..=+.+.+.++
T Consensus 7 K~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~-------------------~~~~~~Dvs~~~~v~ 67 (250)
T d1ydea1 7 KVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQELPG-------------------AVFILCDVTQEDDVK 67 (250)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCTT-------------------EEEEECCTTSHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhcCC-------------------CeEEEccCCCHHHHH
Confidence 44444 5 58899999999999999999999999888877654211 111222234445666
Q ss_pred HHHHhhcccCCCCCEEEcCC
Q psy9637 84 DFIDKLVPLLEKGDIIIDGG 103 (490)
Q Consensus 84 ~vl~~l~~~l~~g~iiId~s 103 (490)
++++++.....+=|++|+..
T Consensus 68 ~~~~~~~~~~g~iDilVnnA 87 (250)
T d1ydea1 68 TLVSETIRRFGRLDCVVNNA 87 (250)
T ss_dssp HHHHHHHHHHSCCCEEEECC
T ss_pred HHHHHHHHhcCCCCEEEecc
Confidence 77766665554556777654
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=95.27 E-value=0.0072 Score=52.82 Aligned_cols=35 Identities=17% Similarity=0.423 Sum_probs=32.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChH
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTA 38 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~ 38 (490)
.+||.|||.|..|..-|..|+++||+|++|++++.
T Consensus 43 ~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~ 77 (179)
T d1ps9a3 43 KKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSE 77 (179)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred CcEEEEECccHHHHHHHHHHHhhccceEEEeccCc
Confidence 46899999999999999999999999999999864
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.22 E-value=0.0079 Score=52.06 Aligned_cols=35 Identities=11% Similarity=0.272 Sum_probs=31.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCC-eEEEEeCChH
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGF-TVVAYNRTTA 38 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~ 38 (490)
.+||.|||.|..|...|..|+++|+ +|+++++++.
T Consensus 4 ~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~ 39 (196)
T d1gtea4 4 SAKIALLGAGPASISCASFLARLGYSDITIFEKQEY 39 (196)
T ss_dssp GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSS
T ss_pred CCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCc
Confidence 3689999999999999999999999 5999998754
|
| >d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=95.20 E-value=0.021 Score=49.33 Aligned_cols=35 Identities=9% Similarity=0.282 Sum_probs=27.5
Q ss_pred CcEEEEcccHHHHHHHHHHHHCC-CeEE-EEeCChHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHG-FTVV-AYNRTTAK 39 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G-~~V~-v~dr~~~~ 39 (490)
+||||.|.|++|+.+.+.+.++. .+|+ +.|+++..
T Consensus 3 irIaINGfGRIGR~v~Ral~~~~dieiVaINd~~~~~ 39 (172)
T d2czca2 3 VKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDF 39 (172)
T ss_dssp EEEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCSH
T ss_pred EEEEEECCCHHHHHHHHHHHhCCCceEEEEecCCChH
Confidence 69999999999999999988654 5655 55666544
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=95.16 E-value=0.038 Score=50.19 Aligned_cols=80 Identities=15% Similarity=0.314 Sum_probs=54.7
Q ss_pred cEEEE-c-ccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 6 DIGLI-G-LAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 6 ~IgiI-G-lG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
|+.+| | .+-+|..+|+.|++.|++|++.+|++++++++.++-. .. ...+.+=+.+...++
T Consensus 5 K~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~~~l~~~~~~~~---------------~~---~~~~~~Dv~~~~~v~ 66 (243)
T d1q7ba_ 5 KIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQAISDYLG---------------AN---GKGLMLNVTDPASIE 66 (243)
T ss_dssp CEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHG---------------GG---EEEEECCTTCHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhC---------------CC---CcEEEEEecCHHHhh
Confidence 56666 5 5779999999999999999999999998887664311 11 112222234445677
Q ss_pred HHHHhhcccCCCCCEEEcCC
Q psy9637 84 DFIDKLVPLLEKGDIIIDGG 103 (490)
Q Consensus 84 ~vl~~l~~~l~~g~iiId~s 103 (490)
++++.+.....+=|++|+..
T Consensus 67 ~~~~~~~~~~g~iDilVnnA 86 (243)
T d1q7ba_ 67 SVLEKIRAEFGEVDILVNNA 86 (243)
T ss_dssp HHHHHHHHHTCSCSEEEECC
T ss_pred hhhhhhhcccCCcceehhhh
Confidence 77777766655557777654
|
| >d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Cow (Bos taurus) [TaxId: 9913]
Probab=95.06 E-value=0.025 Score=52.98 Aligned_cols=112 Identities=13% Similarity=0.186 Sum_probs=70.5
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEe-----------CChHHHHHHHHcccCCCCe-eccCCHHHHHhhCCCCcEE
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYN-----------RTTAKVDSFLANEAKGTNI-IGAHSLEELVKNLKKPRRV 72 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~d-----------r~~~~~~~l~~~g~~~~~i-~~~~s~~e~v~~l~~~dvI 72 (490)
++|.|-|.|++|...|+.|.+.|..|+..+ .+.+.+.........-... ....+..++... ++|++
T Consensus 37 ktvaIqGfGnVG~~~A~~L~e~Gakvv~vsD~~G~i~~~~Gld~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~--~~DIl 114 (293)
T d1hwxa1 37 KTFAVQGFGNVGLHSMRYLHRFGAKCVAVGESDGSIWNPDGIDPKELEDFKLQHGTILGFPKAKIYEGSILEV--DCDIL 114 (293)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEEETTEEECCTTCCCHHHHHHHHHTTSSSTTCTTSCBCCSCGGGC--CCSEE
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEEccchhhccccccchHHHHHHHHHcCCeecccccccCCcccccC--CccEE
Confidence 579999999999999999999999987653 4556666655433220000 001122233332 48998
Q ss_pred EEecCCCchHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccccc
Q psy9637 73 MMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYV 125 (490)
Q Consensus 73 il~vp~~~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~l 125 (490)
+-|--.+....+.+ +.+ .-++|+.+.|.. . +.+..+.+.++|+.|+
T Consensus 115 iPaA~~~~I~~~~a----~~l-~ak~I~EgAN~P-~-t~eA~~~L~~~gI~vi 160 (293)
T d1hwxa1 115 IPAASEKQLTKSNA----PRV-KAKIIAEGANGP-T-TPQADKIFLERNIMVI 160 (293)
T ss_dssp EECSSSSCBCTTTG----GGC-CCSEEECCSSSC-B-CHHHHHHHHHTTCEEE
T ss_pred eeccccccccHHHH----HHH-hhCEEeccCCCC-C-CcchHHHHHHCCCEEe
Confidence 87765543333332 333 346899999865 2 4445678889998775
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=95.05 E-value=0.0074 Score=55.26 Aligned_cols=37 Identities=14% Similarity=0.243 Sum_probs=32.4
Q ss_pred CCCCCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCCh
Q psy9637 1 MAAKGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTT 37 (490)
Q Consensus 1 M~~~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~ 37 (490)
|+..-+|.|||.|.+|.+.|..|+++|++|+++|+++
T Consensus 1 m~~~~DvvIIGaGi~Gls~A~~La~~G~~V~vlE~~~ 37 (276)
T d1ryia1 1 MKRHYEAVVIGGGIIGSAIAYYLAKENKNTALFESGT 37 (276)
T ss_dssp CCSEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CCccCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 5433459999999999999999999999999999864
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.02 E-value=0.04 Score=51.69 Aligned_cols=87 Identities=14% Similarity=0.307 Sum_probs=55.8
Q ss_pred cEEEE-c-ccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEec--CCCch
Q psy9637 6 DIGLI-G-LAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLV--KAGSA 81 (490)
Q Consensus 6 ~IgiI-G-lG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~v--p~~~~ 81 (490)
|+.+| | .+-+|..+|+.|+++|++|++.+|++++.+...++-.. -.......+++.+.+ .+.+.
T Consensus 13 KvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~~~l~~~~~el~~------------~~~~~~~~~~~~~~~Dvs~~~~ 80 (297)
T d1yxma1 13 QVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQA------------NLPPTKQARVIPIQCNIRNEEE 80 (297)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH------------TSCTTCCCCEEEEECCTTCHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh------------hhccccCceEEEEeccCCCHHH
Confidence 45555 4 57799999999999999999999999888766542110 000001134544433 34446
Q ss_pred HHHHHHhhcccCCCCCEEEcCCC
Q psy9637 82 VDDFIDKLVPLLEKGDIIIDGGN 104 (490)
Q Consensus 82 v~~vl~~l~~~l~~g~iiId~s~ 104 (490)
++++++.+.....+=|++|+...
T Consensus 81 v~~~~~~~~~~~G~iDiLVnnAg 103 (297)
T d1yxma1 81 VNNLVKSTLDTFGKINFLVNNGG 103 (297)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHHHhCCeEEEEeecc
Confidence 66777766665556677877543
|
| >d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Methanothermus fervidus [TaxId: 2180]
Probab=95.00 E-value=0.034 Score=47.95 Aligned_cols=35 Identities=9% Similarity=0.246 Sum_probs=27.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCC-CeEE-EEeCChH
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHG-FTVV-AYNRTTA 38 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G-~~V~-v~dr~~~ 38 (490)
|.+|||-|.|++|+.+.+.+.+++ .+|+ +.|+++.
T Consensus 1 M~~VgINGfGRIGR~v~R~l~~~~di~vvaInd~~~~ 37 (171)
T d1cf2o1 1 MKAVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPD 37 (171)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTSSSEEEEEEEESSCS
T ss_pred CeEEEEEcCcHHHHHHHHHHHhCCCceEEEEecCCcH
Confidence 358999999999999999888765 5655 4466544
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.97 E-value=0.026 Score=47.70 Aligned_cols=44 Identities=18% Similarity=0.212 Sum_probs=39.2
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHccc
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEA 48 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~ 48 (490)
.+|.|+|.|.+|...+..+...|.+|++.++++++.+.+.+.|.
T Consensus 29 ~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~~Ga 72 (168)
T d1rjwa2 29 EWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGA 72 (168)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTC
T ss_pred CEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhhcCc
Confidence 57999999999999888888999999999999999988777654
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=94.96 E-value=0.056 Score=49.51 Aligned_cols=83 Identities=12% Similarity=0.169 Sum_probs=54.1
Q ss_pred cEEEEc-ccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 6 DIGLIG-LAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 6 ~IgiIG-lG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
++-|.| .+-+|..+|+.|+++|++|++.+|++++++++.+... +.-.....+.+=+.+.+.+++
T Consensus 8 ~alITGas~GIG~aia~~la~~G~~V~i~~r~~~~l~~~~~~~~---------------~~~~~~~~~~~D~s~~~~~~~ 72 (258)
T d1ae1a_ 8 TALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWR---------------EKGLNVEGSVCDLLSRTERDK 72 (258)
T ss_dssp EEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH---------------HTTCCEEEEECCTTCHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH---------------hcCCCceEEEeecCCHHHHHH
Confidence 465666 6889999999999999999999999988777654211 100001222233344456667
Q ss_pred HHHhhcccC-CCCCEEEcCC
Q psy9637 85 FIDKLVPLL-EKGDIIIDGG 103 (490)
Q Consensus 85 vl~~l~~~l-~~g~iiId~s 103 (490)
+++++.... .+-+++|...
T Consensus 73 ~~~~~~~~~~g~idilinna 92 (258)
T d1ae1a_ 73 LMQTVAHVFDGKLNILVNNA 92 (258)
T ss_dssp HHHHHHHHTTSCCCEEEECC
T ss_pred HHHHHHHHhCCCcEEEeccc
Confidence 777766655 3567777654
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=94.93 E-value=0.041 Score=50.22 Aligned_cols=81 Identities=16% Similarity=0.260 Sum_probs=54.7
Q ss_pred CcEEEE-c-ccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEe--cCCCc
Q psy9637 5 GDIGLI-G-LAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMML--VKAGS 80 (490)
Q Consensus 5 ~~IgiI-G-lG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~--vp~~~ 80 (490)
.||.+| | .+-+|..+|+.|+++|++|++.+|++++++++.++-. +. ..++..+. +.+.+
T Consensus 10 nKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~----------------~~-g~~~~~~~~Dvt~~~ 72 (251)
T d2c07a1 10 NKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIK----------------SF-GYESSGYAGDVSKKE 72 (251)
T ss_dssp SCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHH----------------TT-TCCEEEEECCTTCHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHH----------------hc-CCcEEEEEccCCCHH
Confidence 467777 5 5789999999999999999999999998877654311 00 02333322 24445
Q ss_pred hHHHHHHhhcccCCCCCEEEcC
Q psy9637 81 AVDDFIDKLVPLLEKGDIIIDG 102 (490)
Q Consensus 81 ~v~~vl~~l~~~l~~g~iiId~ 102 (490)
.++++++.+.....+=|++|..
T Consensus 73 ~v~~~~~~~~~~~g~iDilvnn 94 (251)
T d2c07a1 73 EISEVINKILTEHKNVDILVNN 94 (251)
T ss_dssp HHHHHHHHHHHHCSCCCEEEEC
T ss_pred HHHHHHHHHHHhcCCceeeeec
Confidence 6667777776655555677764
|
| >d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Pyrobaculum islandicum [TaxId: 2277]
Probab=94.92 E-value=0.027 Score=51.36 Aligned_cols=113 Identities=14% Similarity=0.175 Sum_probs=68.7
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEe-C----------ChHHHHHHHHccc--------CCCCeeccCCHHHHHhh
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYN-R----------TTAKVDSFLANEA--------KGTNIIGAHSLEELVKN 65 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~d-r----------~~~~~~~l~~~g~--------~~~~i~~~~s~~e~v~~ 65 (490)
++|.|-|+|++|..+|+.|.+.|..|+..+ . +.+.+.+..+... .........+++++...
T Consensus 32 ~~v~IqGfGnVG~~~a~~L~~~Gakvv~vsD~~g~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 111 (242)
T d1v9la1 32 KTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDINGVAYRKEGLNVELIQKNKGLTGPALVELFTTKDNAEFVKNPDAIFKL 111 (242)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSCEEECTTCCCTHHHHHTTTSCHHHHHHHHHHTSCCCCCSSTTGGGGC
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEeecccccccccccccHHHHHHHhhcchhhHHHhhhhccCceEeeCcchhccc
Confidence 589999999999999999999999987543 2 2222222111000 00001123344555542
Q ss_pred CCCCcEEEEecCCCchHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccc
Q psy9637 66 LKKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVG 126 (490)
Q Consensus 66 l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld 126 (490)
++|+++-|-..+....+. .+.+ +-++|+...|.. . +.+..+.+.++|+.|+.
T Consensus 112 --~~DIliPcA~~~~I~~~~----a~~i-~ak~IvegAN~p-~-t~~a~~~L~~rgI~~~P 163 (242)
T d1v9la1 112 --DVDIFVPAAIENVIRGDN----AGLV-KARLVVEGANGP-T-TPEAERILYERGVVVVP 163 (242)
T ss_dssp --CCSEEEECSCSSCBCTTT----TTTC-CCSEEECCSSSC-B-CHHHHHHHHTTTCEEEC
T ss_pred --cccEEeecchhccccHHH----HHhc-ccCEEEecCCCC-C-ChhHHHHHHhCCeEEeC
Confidence 489998776655333332 2334 347999998865 3 44445788899987753
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.91 E-value=0.08 Score=48.32 Aligned_cols=83 Identities=13% Similarity=0.179 Sum_probs=55.0
Q ss_pred cEEEE--cccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEe--cCCCch
Q psy9637 6 DIGLI--GLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMML--VKAGSA 81 (490)
Q Consensus 6 ~IgiI--GlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~--vp~~~~ 81 (490)
|+.+| |.+-+|..+|+.|+++|++|++.+|++++++++.++-. +.-...+++.+. +.+.+.
T Consensus 11 Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~---------------~~~~~~~~~~~~~Dls~~~~ 75 (257)
T d1xg5a_ 11 RLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECK---------------SAGYPGTLIPYRCDLSNEED 75 (257)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH---------------HTTCSSEEEEEECCTTCHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH---------------hcCCCceEEEEEccCCCHHH
Confidence 56655 56889999999999999999999999998887664311 100012344332 344456
Q ss_pred HHHHHHhhcccCCCCCEEEcCC
Q psy9637 82 VDDFIDKLVPLLEKGDIIIDGG 103 (490)
Q Consensus 82 v~~vl~~l~~~l~~g~iiId~s 103 (490)
++.+++.+......=|++|+..
T Consensus 76 v~~~v~~~~~~~g~iD~lVnnA 97 (257)
T d1xg5a_ 76 ILSMFSAIRSQHSGVDICINNA 97 (257)
T ss_dssp HHHHHHHHHHHHCCCSEEEECC
T ss_pred HHHHHHHHHHhcCCCCEEEecc
Confidence 6777776666554456777654
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=94.85 E-value=0.083 Score=45.34 Aligned_cols=45 Identities=18% Similarity=0.310 Sum_probs=40.0
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHcccC
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGF-TVVAYNRTTAKVDSFLANEAK 49 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~g~~ 49 (490)
..|.|+|+|-+|.....-+...|. +|++.|+++++.+...+.|+.
T Consensus 31 ~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~ 76 (176)
T d1d1ta2 31 STCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGAT 76 (176)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTCS
T ss_pred CEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCCc
Confidence 469999999999999999999995 799999999999988887764
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.85 E-value=0.04 Score=50.17 Aligned_cols=81 Identities=19% Similarity=0.213 Sum_probs=54.0
Q ss_pred cEEEE-c-ccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 6 DIGLI-G-LAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 6 ~IgiI-G-lG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
|+.+| | .+-+|..+|+.|+++|++|++.+|++++.+.+.++.. .. +..+-.=+.+...++
T Consensus 7 K~alITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~---------------~~---~~~~~~Dv~~~~~v~ 68 (244)
T d1nffa_ 7 KVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELA---------------DA---ARYVHLDVTQPAQWK 68 (244)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTG---------------GG---EEEEECCTTCHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhh---------------Cc---ceEEEeecCCHHHHH
Confidence 55665 5 5779999999999999999999999998887665321 11 111111134445667
Q ss_pred HHHHhhcccCCCCCEEEcCCC
Q psy9637 84 DFIDKLVPLLEKGDIIIDGGN 104 (490)
Q Consensus 84 ~vl~~l~~~l~~g~iiId~s~ 104 (490)
++++.+.....+=|++|+...
T Consensus 69 ~~~~~~~~~~g~idilinnAG 89 (244)
T d1nffa_ 69 AAVDTAVTAFGGLHVLVNNAG 89 (244)
T ss_dssp HHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHhCCCeEEEECCc
Confidence 777776665555577776543
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=94.82 E-value=0.021 Score=50.10 Aligned_cols=73 Identities=14% Similarity=0.147 Sum_probs=49.2
Q ss_pred CCCcEEEEc-ccHHHHHHHHHHHHCCCeEEE--EeCChHHHHHHHHcccCCCCee-ccCCHHHHHhhCCCCcEEEEecCC
Q psy9637 3 AKGDIGLIG-LAVMGQNLILNMNDHGFTVVA--YNRTTAKVDSFLANEAKGTNII-GAHSLEELVKNLKKPRRVMMLVKA 78 (490)
Q Consensus 3 ~~~~IgiIG-lG~MG~~lA~~L~~~G~~V~v--~dr~~~~~~~l~~~g~~~~~i~-~~~s~~e~v~~l~~~dvIil~vp~ 78 (490)
+|++|-|.| .|.+|..+++.|+++||+|.+ ..|++++.+.+... .. .+. -..+.+++.+.++.+|.|+.+...
T Consensus 2 ~~~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~~~~~~~-~~--~~~~d~~~~~~~~~~~~~~d~vi~~a~~ 78 (252)
T d2q46a1 2 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGE-AD--VFIGDITDADSINPAFQGIDALVILTSA 78 (252)
T ss_dssp SCCEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHHHHTTCC-TT--EEECCTTSHHHHHHHHTTCSEEEECCCC
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHHHhccCC-cE--EEEeeeccccccccccccceeeEEEEee
Confidence 467999998 699999999999999987554 56888776654321 11 011 134555555555668888877643
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=94.80 E-value=0.031 Score=47.90 Aligned_cols=92 Identities=17% Similarity=0.155 Sum_probs=59.8
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
.+|.|.|. |.+|.....-+...|.+|++.++++++.+.+.+.|+. .+.-..+..+.......+|+||-++.. ...
T Consensus 29 ~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~~lGa~--~~i~~~~~~~~~~~~~g~D~v~d~~G~--~~~ 104 (171)
T d1iz0a2 29 EKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAE--EAATYAEVPERAKAWGGLDLVLEVRGK--EVE 104 (171)
T ss_dssp CEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCS--EEEEGGGHHHHHHHTTSEEEEEECSCT--THH
T ss_pred CEEEEEeccccchhhhhhhhcccccccccccccccccccccccccc--eeeehhhhhhhhhccccccccccccch--hHH
Confidence 46889895 9999988888888899999999999998888877653 122222333333444567888876642 333
Q ss_pred HHHHhhcccCCCCCEEEcCCC
Q psy9637 84 DFIDKLVPLLEKGDIIIDGGN 104 (490)
Q Consensus 84 ~vl~~l~~~l~~g~iiId~s~ 104 (490)
+ ....+.++-.++..|+
T Consensus 105 ~----~~~~l~~~G~~v~~G~ 121 (171)
T d1iz0a2 105 E----SLGLLAHGGRLVYIGA 121 (171)
T ss_dssp H----HHTTEEEEEEEEEC--
T ss_pred H----HHHHHhcCCcEEEEeC
Confidence 3 3344555555665554
|
| >d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain species: Escherichia coli [TaxId: 562]
Probab=94.77 E-value=0.0074 Score=45.20 Aligned_cols=34 Identities=15% Similarity=0.181 Sum_probs=31.2
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTA 38 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~ 38 (490)
++|||+|.|..|+-|+..-.+-|++|.++|.+++
T Consensus 2 k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~ 35 (78)
T d3etja2 2 KQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAE 35 (78)
T ss_dssp EEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSC
T ss_pred CEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCC
Confidence 5899999999999999999999999999998643
|
| >d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.75 E-value=0.14 Score=42.08 Aligned_cols=97 Identities=11% Similarity=0.176 Sum_probs=59.8
Q ss_pred cEEEEc-ccHHHHHHHHHHHH-CCCeEE-EEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchH
Q psy9637 6 DIGLIG-LAVMGQNLILNMND-HGFTVV-AYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAV 82 (490)
Q Consensus 6 ~IgiIG-lG~MG~~lA~~L~~-~G~~V~-v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v 82 (490)
||+|+| .|+||+.++..+.+ .++++. ++|+.. ++..... ..+|+||=-..+ +.+
T Consensus 1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~~~--------------------~~~~~~~--~~~DvvIDFS~p-~~~ 57 (135)
T d1yl7a1 1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDAGD--------------------PLSLLTD--GNTEVVIDFTHP-DVV 57 (135)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECTTC--------------------CTHHHHT--TTCSEEEECCCT-TTH
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCC--------------------chhhhcc--ccCCEEEEcccH-HHH
Confidence 799999 69999999888765 567765 455431 2222221 237988866655 467
Q ss_pred HHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHH--HHccccccccC
Q psy9637 83 DDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKAL--EAKGLLYVGCG 128 (490)
Q Consensus 83 ~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l--~~~gi~~ld~~ 128 (490)
.+.++.+. +.+.-+|-++|+...+..+..+.+ +.+.+..+-+|
T Consensus 58 ~~~~~~~~---~~~~~~ViGTTG~~~~~~~~l~~~~~~~~~ipil~ap 102 (135)
T d1yl7a1 58 MGNLEFLI---DNGIHAVVGTTGFTAERFQQVESWLVAKPNTSVLIAP 102 (135)
T ss_dssp HHHHHHHH---HTTCEEEECCCCCCHHHHHHHHHHHHSCTTCEEEECS
T ss_pred HHHHHHHH---hcCCCEEEeccccchhHHHHHHHHHHhcCCCCEEEcC
Confidence 66666554 356778888888865555554442 33455444343
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Probab=94.74 E-value=0.051 Score=50.23 Aligned_cols=80 Identities=16% Similarity=0.234 Sum_probs=52.8
Q ss_pred cEEEE-c-ccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 6 DIGLI-G-LAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 6 ~IgiI-G-lG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
|+.+| | .+-+|..+|+.|+++|++|++.+|++++++++.++.. .. ...+..=+.+.+.++
T Consensus 6 K~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~---------------~~---~~~~~~Dv~~~~~~~ 67 (276)
T d1bdba_ 6 EAVLITGGASGLGRALVDRFVAEGAKVAVLDKSAERLAELETDHG---------------DN---VLGIVGDVRSLEDQK 67 (276)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHG---------------GG---EEEEECCTTCHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcC---------------CC---eeEEecccccHHHHH
Confidence 45555 5 5889999999999999999999999988877654311 11 122222234444566
Q ss_pred HHHHhhcccCCCCCEEEcCC
Q psy9637 84 DFIDKLVPLLEKGDIIIDGG 103 (490)
Q Consensus 84 ~vl~~l~~~l~~g~iiId~s 103 (490)
+.++.+.....+=|++|+..
T Consensus 68 ~~~~~~~~~~g~idilvnnA 87 (276)
T d1bdba_ 68 QAASRCVARFGKIDTLIPNA 87 (276)
T ss_dssp HHHHHHHHHHSCCCEEECCC
T ss_pred HHHHHHHHHhCCcccccccc
Confidence 66666665555557777653
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=94.73 E-value=0.011 Score=54.83 Aligned_cols=33 Identities=12% Similarity=0.274 Sum_probs=31.2
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCCh
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTT 37 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~ 37 (490)
+||.|||.|..|...|..|+++|++|+++++++
T Consensus 31 kkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~ 63 (370)
T d2iida1 31 KHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASE 63 (370)
T ss_dssp CEEEEECCBHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 589999999999999999999999999999874
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Probab=94.72 E-value=0.01 Score=54.84 Aligned_cols=35 Identities=23% Similarity=0.291 Sum_probs=32.5
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAK 39 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~ 39 (490)
.+|.|||.|..|..+|..|+++|++|.+++++++.
T Consensus 3 ~~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~~~ 37 (292)
T d1k0ia1 3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPD 37 (292)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHH
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence 47999999999999999999999999999998753
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=94.67 E-value=0.011 Score=53.40 Aligned_cols=33 Identities=21% Similarity=0.425 Sum_probs=31.1
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCCh
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTT 37 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~ 37 (490)
+||.|||.|.-|...|..|+++|++|+++++++
T Consensus 2 KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~ 34 (373)
T d1seza1 2 KRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEG 34 (373)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTSCEEEEECSSS
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 589999999999999999999999999999864
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=94.66 E-value=0.063 Score=49.13 Aligned_cols=81 Identities=12% Similarity=0.245 Sum_probs=53.2
Q ss_pred cEEEE-c-ccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEe--cCCCch
Q psy9637 6 DIGLI-G-LAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMML--VKAGSA 81 (490)
Q Consensus 6 ~IgiI-G-lG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~--vp~~~~ 81 (490)
|+.+| | .+-+|..+|+.|++.|++|++.+|++++++++.++-. +. ..++..+. +.+...
T Consensus 9 K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~---------------~~--g~~~~~~~~Dv~~~~~ 71 (259)
T d2ae2a_ 9 CTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWR---------------SK--GFKVEASVCDLSSRSE 71 (259)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH---------------HT--TCEEEEEECCTTCHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH---------------hc--CCCceEEEeeCCCHHH
Confidence 45555 5 4679999999999999999999999998877654311 11 02333322 234445
Q ss_pred HHHHHHhhcccCC-CCCEEEcCC
Q psy9637 82 VDDFIDKLVPLLE-KGDIIIDGG 103 (490)
Q Consensus 82 v~~vl~~l~~~l~-~g~iiId~s 103 (490)
++++++.+...+. +=|++|+..
T Consensus 72 v~~~~~~~~~~~~~~idilvnnA 94 (259)
T d2ae2a_ 72 RQELMNTVANHFHGKLNILVNNA 94 (259)
T ss_dssp HHHHHHHHHHHTTTCCCEEEECC
T ss_pred HHHHHHHHHHHhCCCceEEEECC
Confidence 6667776665554 457777754
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.63 E-value=0.036 Score=50.41 Aligned_cols=41 Identities=27% Similarity=0.395 Sum_probs=34.5
Q ss_pred cEEEEc-ccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHc
Q psy9637 6 DIGLIG-LAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLAN 46 (490)
Q Consensus 6 ~IgiIG-lG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~ 46 (490)
++-|.| .+-+|..+|+.|+++|++|++.||++++++++.++
T Consensus 9 ~~lITGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~ 50 (244)
T d1pr9a_ 9 RVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRE 50 (244)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHh
Confidence 444555 57899999999999999999999999988877654
|
| >d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=94.57 E-value=0.13 Score=46.42 Aligned_cols=113 Identities=17% Similarity=0.220 Sum_probs=71.7
Q ss_pred CcEEEEcccHHHHHHHHHHH-HCCCeEEEEe-----------CChHHHHHHHHcccCC---CCeeccCCHHHHHhhCCCC
Q psy9637 5 GDIGLIGLAVMGQNLILNMN-DHGFTVVAYN-----------RTTAKVDSFLANEAKG---TNIIGAHSLEELVKNLKKP 69 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~-~~G~~V~v~d-----------r~~~~~~~l~~~g~~~---~~i~~~~s~~e~v~~l~~~ 69 (490)
++|.|-|+|++|..+|+.|. +.|..|+..+ .+.+.+..+.+..... .... ..+.+++... ++
T Consensus 32 ~~vaIqG~GnVG~~~a~~L~~e~Ga~vv~vsd~~G~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~ 108 (234)
T d1b26a1 32 ATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHGTVVTYPKGE-RITNEELLEL--DV 108 (234)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHHCCEEEEEEETTEEEECTTCCCHHHHHHHHHHSSCSTTCSSCE-EECHHHHHTS--CC
T ss_pred CEEEEECCCHHHHHHHHHHHHhcCCceEEeecCCCcEEeccccchHHHHHHHHhhcceeccccce-eecccccccc--cc
Confidence 58999999999999999997 5698887543 2445555544432210 0111 2345666653 48
Q ss_pred cEEEEecCCCchHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccccccc
Q psy9637 70 RRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGC 127 (490)
Q Consensus 70 dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~ 127 (490)
|+++-|--.+...++.+.. +. -++|+...|..- +.+..+.|.++|+.|+.-
T Consensus 109 DI~~PcA~~~~I~~~~a~~----l~-~~~I~e~AN~p~--t~~a~~~L~~rgI~~~PD 159 (234)
T d1b26a1 109 DILVPAALEGAIHAGNAER----IK-AKAVVEGANGPT--TPEADEILSRRGILVVPD 159 (234)
T ss_dssp SEEEECSCTTCBCHHHHTT----CC-CSEEECCSSSCB--CHHHHHHHHHTTCEEECH
T ss_pred ceeecchhcccccHHHHHH----hh-hceEeecCCCCC--CHHHHHHHHHCCeEEech
Confidence 9988776555444444443 32 368999988643 334457889999988643
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=94.55 E-value=0.1 Score=47.65 Aligned_cols=83 Identities=10% Similarity=0.179 Sum_probs=54.5
Q ss_pred cEEEE-c-ccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEec--CCCch
Q psy9637 6 DIGLI-G-LAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLV--KAGSA 81 (490)
Q Consensus 6 ~IgiI-G-lG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~v--p~~~~ 81 (490)
|+.|| | .+-+|..+|+.|+++|++|++.||++++++...+.. .+.-...+++.+.+ .+...
T Consensus 5 K~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~---------------~~~~~~~~~~~~~~Dvt~~~~ 69 (258)
T d1iy8a_ 5 RVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAV---------------LETAPDAEVLTTVADVSDEAQ 69 (258)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---------------HHHCTTCCEEEEECCTTSHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH---------------HhhCCCCeEEEEeccCCCHHH
Confidence 45555 5 467999999999999999999999998877655321 11111134443332 34456
Q ss_pred HHHHHHhhcccCCCCCEEEcCC
Q psy9637 82 VDDFIDKLVPLLEKGDIIIDGG 103 (490)
Q Consensus 82 v~~vl~~l~~~l~~g~iiId~s 103 (490)
++.+++.+.....+=|++|+..
T Consensus 70 v~~~~~~~~~~~G~iDiLVnnA 91 (258)
T d1iy8a_ 70 VEAYVTATTERFGRIDGFFNNA 91 (258)
T ss_dssp HHHHHHHHHHHHSCCSEEEECC
T ss_pred HHHHHHHHHHHhCCCCEEEECC
Confidence 6777777666555557777754
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=94.52 E-value=0.027 Score=51.23 Aligned_cols=121 Identities=12% Similarity=0.171 Sum_probs=70.2
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHccc-CCCCe--eccCCHHHHHhhCCCCcEEEEecCCCc
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGF-TVVAYNRTTAKVDSFLANEA-KGTNI--IGAHSLEELVKNLKKPRRVMMLVKAGS 80 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~g~-~~~~i--~~~~s~~e~v~~l~~~dvIil~vp~~~ 80 (490)
.+|.|||+|.+|..++.+|++.|. +++++|.+.=....+...-. ....+ .-+....+.+..+ .|++-+..++...
T Consensus 31 ~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~Ve~sNL~RQ~l~~~~diG~~K~~~a~~~l~~~-np~~~i~~~~~~~ 109 (247)
T d1jw9b_ 31 SRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRI-NPHIAITPVNALL 109 (247)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHH-CTTSEEEEECSCC
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCCeEEEECCcccchhhhhhhccccHhhcCchHHHHHHHHHHHh-hcccchhhhhhhh
Confidence 589999999999999999999998 78888866322222221100 00000 0112222222221 2677777776642
Q ss_pred hHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCC
Q psy9637 81 AVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSG 131 (490)
Q Consensus 81 ~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsG 131 (490)
.-.. ... .+...+++||+... +.......+.+.+.++.|+.+.+.|
T Consensus 110 ~~~~-~~~---~~~~~divid~~d~-~~~~~~in~~~~~~~ip~i~g~~~~ 155 (247)
T d1jw9b_ 110 DDAE-LAA---LIAEHDLVLDCTDN-VAVRNQLNAGCFAAKVPLVSGAAIR 155 (247)
T ss_dssp CHHH-HHH---HHHTSSEEEECCSS-HHHHHHHHHHHHHHTCCEEEEEEEB
T ss_pred hhcc-ccc---cccccceeeeccch-hhhhhhHHHHHHHhCCCcccccccc
Confidence 2222 222 23467899999764 3333344466677788888766554
|
| >d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Transcriptional repressor Rex, C-terminal domain domain: Transcriptional repressor Rex, C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=94.48 E-value=0.003 Score=51.99 Aligned_cols=79 Identities=19% Similarity=0.255 Sum_probs=48.8
Q ss_pred CcEEEEcccHHHHHHHHHHH-HCCCeEEE-EeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchH
Q psy9637 5 GDIGLIGLAVMGQNLILNMN-DHGFTVVA-YNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAV 82 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~-~~G~~V~v-~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v 82 (490)
-+|.|+|+|.+|..++..+. +.||++++ +|-++++..... .+.++...+.+.++... ..+++++++|. ...
T Consensus 4 ~~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd~~k~G~~I----~Gi~V~~~~~l~~~~~~--~i~iai~~i~~-~~~ 76 (126)
T d2dt5a2 4 WGLCIVGMGRLGSALADYPGFGESFELRGFFDVDPEKVGRPV----RGGVIEHVDLLPQRVPG--RIEIALLTVPR-EAA 76 (126)
T ss_dssp EEEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCTTTTTCEE----TTEEEEEGGGHHHHSTT--TCCEEEECSCH-HHH
T ss_pred ceEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCchHhcCCEE----CCEEEecHHHHHHHHhh--cccEEEEeCCH-HHH
Confidence 37999999999999998764 45788775 587776433211 12233333445554443 36777777776 355
Q ss_pred HHHHHhhc
Q psy9637 83 DDFIDKLV 90 (490)
Q Consensus 83 ~~vl~~l~ 90 (490)
+++++.+.
T Consensus 77 ~~I~d~l~ 84 (126)
T d2dt5a2 77 QKAADLLV 84 (126)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55655544
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=94.45 E-value=0.015 Score=55.09 Aligned_cols=35 Identities=14% Similarity=0.245 Sum_probs=32.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChH
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTA 38 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~ 38 (490)
++||.|||.|.-|...|..|+++|++|++++++..
T Consensus 2 ~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~ 36 (314)
T d2bi7a1 2 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDH 36 (314)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred CCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCC
Confidence 46899999999999999999999999999998743
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=94.44 E-value=0.032 Score=51.21 Aligned_cols=80 Identities=16% Similarity=0.210 Sum_probs=53.1
Q ss_pred cEEEE-c-ccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEe--cCCCch
Q psy9637 6 DIGLI-G-LAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMML--VKAGSA 81 (490)
Q Consensus 6 ~IgiI-G-lG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~--vp~~~~ 81 (490)
|+.+| | .+-+|..+|+.|+++|++|++.||++++++++.+.-. .. ..++..+. +.+...
T Consensus 6 K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~----------------~~-g~~~~~~~~Dv~~~~~ 68 (260)
T d1zema1 6 KVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVR----------------EK-GVEARSYVCDVTSEEA 68 (260)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH----------------TT-TSCEEEEECCTTCHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH----------------hc-CCcEEEEEccCCCHHH
Confidence 45555 5 4679999999999999999999999988877654311 00 12333332 344456
Q ss_pred HHHHHHhhcccCCCCCEEEcC
Q psy9637 82 VDDFIDKLVPLLEKGDIIIDG 102 (490)
Q Consensus 82 v~~vl~~l~~~l~~g~iiId~ 102 (490)
++++++.+.....+=|++|+.
T Consensus 69 v~~~~~~~~~~~g~iDilVnn 89 (260)
T d1zema1 69 VIGTVDSVVRDFGKIDFLFNN 89 (260)
T ss_dssp HHHHHHHHHHHHSCCCEEEEC
T ss_pred HHHHHHHHHHHhCCCCeehhh
Confidence 677777766655555777765
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=94.43 E-value=0.058 Score=49.13 Aligned_cols=81 Identities=9% Similarity=0.136 Sum_probs=55.0
Q ss_pred cEEEE--cccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEe--cCCCch
Q psy9637 6 DIGLI--GLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMML--VKAGSA 81 (490)
Q Consensus 6 ~IgiI--GlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~--vp~~~~ 81 (490)
|+.+| |.+-+|..+|+.|++.|++|++.+|++++.+.+.+.-.. . .++..+. +.+...
T Consensus 7 K~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~---------------~---~~~~~~~~Dv~~~~~ 68 (251)
T d1zk4a1 7 KVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGT---------------P---DQIQFFQHDSSDEDG 68 (251)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCC---------------T---TTEEEEECCTTCHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCC---------------C---CcEEEEEccCCCHHH
Confidence 56666 467899999999999999999999999988776643210 0 1233222 344456
Q ss_pred HHHHHHhhcccCCCCCEEEcCCC
Q psy9637 82 VDDFIDKLVPLLEKGDIIIDGGN 104 (490)
Q Consensus 82 v~~vl~~l~~~l~~g~iiId~s~ 104 (490)
++++++.+.....+=|++|+...
T Consensus 69 v~~~~~~~~~~~G~iDiLVnnAg 91 (251)
T d1zk4a1 69 WTKLFDATEKAFGPVSTLVNNAG 91 (251)
T ss_dssp HHHHHHHHHHHHSSCCEEEECCC
T ss_pred HHHHHHHHHHHhCCceEEEeccc
Confidence 67777776665555577777543
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=94.42 E-value=0.076 Score=45.17 Aligned_cols=94 Identities=15% Similarity=0.146 Sum_probs=58.3
Q ss_pred CcEEEEcccHHHHHHHHHHHHCC-CeEEEEeCChHHHHHHHHcccCCCCeeccCC-HHHHHhhC--CCCcEEEEecCCCc
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHG-FTVVAYNRTTAKVDSFLANEAKGTNIIGAHS-LEELVKNL--KKPRRVMMLVKAGS 80 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G-~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s-~~e~v~~l--~~~dvIil~vp~~~ 80 (490)
.+|.|+|.|.+|...+.-+...| ..|++.|+++++.+.+.+.+.. .-+...++ +++..+.. ...|+||-++....
T Consensus 34 ~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga~-~~i~~~~~~~~~~~~~~~~~g~d~vid~~g~~~ 112 (172)
T d1h2ba2 34 AYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGAD-HVVDARRDPVKQVMELTRGRGVNVAMDFVGSQA 112 (172)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCS-EEEETTSCHHHHHHHHTTTCCEEEEEESSCCHH
T ss_pred CEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhcccc-eeecCcccHHHHHHHhhCCCCceEEEEecCcch
Confidence 46999999999998888777667 4778899999999888876653 11111222 22233221 23688888876643
Q ss_pred hHHHHHHhhcccCCCCCEEEcCC
Q psy9637 81 AVDDFIDKLVPLLEKGDIIIDGG 103 (490)
Q Consensus 81 ~v~~vl~~l~~~l~~g~iiId~s 103 (490)
. ++.....++++-.++-.|
T Consensus 113 ~----~~~a~~~l~~~G~iv~~G 131 (172)
T d1h2ba2 113 T----VDYTPYLLGRMGRLIIVG 131 (172)
T ss_dssp H----HHHGGGGEEEEEEEEECC
T ss_pred H----HHHHHHHHhCCCEEEEEe
Confidence 3 333344445555554444
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=94.41 E-value=0.058 Score=49.28 Aligned_cols=84 Identities=18% Similarity=0.244 Sum_probs=54.9
Q ss_pred CCCCCcEEEE-c-ccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEE--ec
Q psy9637 1 MAAKGDIGLI-G-LAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMM--LV 76 (490)
Q Consensus 1 M~~~~~IgiI-G-lG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil--~v 76 (490)
|.=+-|+.|| | .+-+|..+|+.|++.|++|++.||++++++.+.++.. .+++.+ =+
T Consensus 1 M~L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~--------------------~~~~~~~~Dv 60 (256)
T d1k2wa_ 1 MRLDGKTALITGSARGIGRAFAEAYVREGARVAIADINLEAARATAAEIG--------------------PAACAIALDV 60 (256)
T ss_dssp CTTTTEEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCHHHHHHHHHHHC--------------------TTEEEEECCT
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhC--------------------CceEEEEeeC
Confidence 4422355555 4 5889999999999999999999999998887665321 122221 22
Q ss_pred CCCchHHHHHHhhcccCCCCCEEEcCCC
Q psy9637 77 KAGSAVDDFIDKLVPLLEKGDIIIDGGN 104 (490)
Q Consensus 77 p~~~~v~~vl~~l~~~l~~g~iiId~s~ 104 (490)
.+.+.++++++.+.....+=|++|+...
T Consensus 61 t~~~~v~~~~~~~~~~~g~iDilVnnAg 88 (256)
T d1k2wa_ 61 TDQASIDRCVAELLDRWGSIDILVNNAA 88 (256)
T ss_dssp TCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred CCHHHHHHHHHHHHHHhCCccEEEeecc
Confidence 3445666666666655545567776543
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Probab=94.37 E-value=0.017 Score=50.80 Aligned_cols=33 Identities=12% Similarity=0.287 Sum_probs=30.3
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-eEEEEeCCh
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGF-TVVAYNRTT 37 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~ 37 (490)
+||.|||.|.-|...|..|+++|+ +|+++++++
T Consensus 1 P~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~ 34 (347)
T d1b5qa1 1 PRVIVVGAGMSGISAAKRLSEAGITDLLILEATD 34 (347)
T ss_dssp CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred CCEEEECCcHHHHHHHHHHHhCCCCcEEEEECCC
Confidence 479999999999999999999996 799999874
|
| >d2nu7a1 c.2.1.8 (A:2-120) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain species: Escherichia coli [TaxId: 562]
Probab=94.32 E-value=0.21 Score=39.86 Aligned_cols=111 Identities=13% Similarity=0.052 Sum_probs=82.2
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHHCCCeEE-EEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCch
Q psy9637 4 KGDIGLIGL-AVMGQNLILNMNDHGFTVV-AYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSA 81 (490)
Q Consensus 4 ~~~IgiIGl-G~MG~~lA~~L~~~G~~V~-v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~ 81 (490)
..||-+-|. |+-|+..+.++.+.|-+|+ +.++... |..-..+-.+++.+|+++.. .+|.-++-||+..+
T Consensus 6 ~trVlvQGiTG~~G~~ht~~m~~yGT~vVaGVtPgkg--------G~~~~giPVf~sV~eAv~~~-~~~~SvIfVPp~~a 76 (119)
T d2nu7a1 6 NTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKG--------GTTHLGLPVFNTVREAVAAT-GATASVIYVPAPFC 76 (119)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCT--------TEEETTEEEESSHHHHHHHH-CCCEEEECCCGGGH
T ss_pred CCcEEEEcCCCcHHHHHHHHHHHhCCceEEEEccCCC--------CcccCCCchhhHHHHHHHHh-CCCeEEEeccHHHH
Confidence 468999997 9999999999999998876 3443211 11112355789999999874 57999999999877
Q ss_pred HHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccccc
Q psy9637 82 VDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYV 125 (490)
Q Consensus 82 v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~l 125 (490)
.+.+++.+...+ ..+|+-.-.....|..+..+.+++++.+++
T Consensus 77 ~dA~~EAi~agI--~~iV~ITEgIP~~D~~~i~~~~~~~~~~li 118 (119)
T d2nu7a1 77 KDSILEAIDAGI--KLIITITEGIPTLDMLTVKVKLDEAGVRMI 118 (119)
T ss_dssp HHHHHHHHHTTC--SEEEECCCCCCHHHHHHHHHHHHHHTCEEE
T ss_pred HHHHHHHHHCCC--CEEEEecCCCCHHHHHHHHHHHhhCCCEEe
Confidence 788888776655 245666666777888888788888887665
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.28 E-value=0.051 Score=49.25 Aligned_cols=41 Identities=22% Similarity=0.309 Sum_probs=34.2
Q ss_pred cEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHc
Q psy9637 6 DIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLAN 46 (490)
Q Consensus 6 ~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~ 46 (490)
++-|.|. +-+|..+|+.|+++|++|++.+|++++++++.++
T Consensus 7 ~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~ 48 (242)
T d1cyda_ 7 RALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKE 48 (242)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHh
Confidence 4445564 6799999999999999999999999988877654
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=94.26 E-value=0.046 Score=47.00 Aligned_cols=78 Identities=12% Similarity=0.150 Sum_probs=52.1
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHcccCCCCeec--cC-CHHHHHhh--CCCCcEEEEecCC
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGF-TVVAYNRTTAKVDSFLANEAKGTNIIG--AH-SLEELVKN--LKKPRRVMMLVKA 78 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~g~~~~~i~~--~~-s~~e~v~~--l~~~dvIil~vp~ 78 (490)
.+|.|+|+|.+|...+..+...|. .|++.|+++++.+...+.|+.. -+.. .+ ........ -..+|++|-|+..
T Consensus 30 ~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga~~-~i~~~~~~~~~~~~~~~~~~~G~d~vie~~G~ 108 (174)
T d1e3ia2 30 STCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATD-CLNPRELDKPVQDVITELTAGGVDYSLDCAGT 108 (174)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSE-EECGGGCSSCHHHHHHHHHTSCBSEEEESSCC
T ss_pred CEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCCCc-ccCCccchhhhhhhHhhhhcCCCcEEEEeccc
Confidence 479999999999999999999997 6888999999988877766531 1111 11 12222221 1246888888766
Q ss_pred CchHH
Q psy9637 79 GSAVD 83 (490)
Q Consensus 79 ~~~v~ 83 (490)
....+
T Consensus 109 ~~~~~ 113 (174)
T d1e3ia2 109 AQTLK 113 (174)
T ss_dssp HHHHH
T ss_pred chHHH
Confidence 43333
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.26 E-value=0.021 Score=49.84 Aligned_cols=37 Identities=14% Similarity=0.160 Sum_probs=33.2
Q ss_pred CCCCCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCCh
Q psy9637 1 MAAKGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTT 37 (490)
Q Consensus 1 M~~~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~ 37 (490)
|+..-.|.|||.|.-|...|..|+++|++|.++++++
T Consensus 2 m~~~yDviViGaG~~Gl~~A~~La~~G~~V~vlE~~~ 38 (297)
T d2bcgg1 2 IDTDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQD 38 (297)
T ss_dssp CCCBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CCCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCC
Confidence 5555569999999999999999999999999999874
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=94.25 E-value=0.069 Score=48.78 Aligned_cols=80 Identities=10% Similarity=0.025 Sum_probs=52.2
Q ss_pred cEEEEc-ccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 6 DIGLIG-LAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 6 ~IgiIG-lG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
.+-|.| .+-+|..+|+.|+++|++|++.||++++.+++.++.. .. +..+-+=+.+.+.+++
T Consensus 7 ~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~---------------~~---~~~~~~Dv~~~~~v~~ 68 (254)
T d1hdca_ 7 TVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATARELG---------------DA---ARYQHLDVTIEEDWQR 68 (254)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTG---------------GG---EEEEECCTTCHHHHHH
T ss_pred EEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhC---------------Cc---eEEEEcccCCHHHHHH
Confidence 344455 4679999999999999999999999988877654311 11 1122222344456667
Q ss_pred HHHhhcccCCCCCEEEcCC
Q psy9637 85 FIDKLVPLLEKGDIIIDGG 103 (490)
Q Consensus 85 vl~~l~~~l~~g~iiId~s 103 (490)
+++.+.....+=|++|+..
T Consensus 69 ~~~~~~~~~g~iDilVnnA 87 (254)
T d1hdca_ 69 VVAYAREEFGSVDGLVNNA 87 (254)
T ss_dssp HHHHHHHHHSCCCEEEECC
T ss_pred HHHHHHHHcCCccEEEecC
Confidence 7766665554556777654
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=94.19 E-value=0.025 Score=48.21 Aligned_cols=95 Identities=13% Similarity=0.054 Sum_probs=60.1
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCC-CeEEEEeCChHHHHHHHHcccCCCCee-ccCCHHH-HHhhC--CCCcEEEEecCC
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDHG-FTVVAYNRTTAKVDSFLANEAKGTNII-GAHSLEE-LVKNL--KKPRRVMMLVKA 78 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~G-~~V~v~dr~~~~~~~l~~~g~~~~~i~-~~~s~~e-~v~~l--~~~dvIil~vp~ 78 (490)
.+|.|+|. |.+|...+..+...| ..|++.++++++.+.+.+.|+. ..+. ...++.+ ..+.. ...|+||-|+..
T Consensus 29 ~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga~-~~i~~~~~~~~~~~~~~~~~~~~d~vid~~g~ 107 (170)
T d1jvba2 29 KTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGAD-YVINASMQDPLAEIRRITESKGVDAVIDLNNS 107 (170)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCS-EEEETTTSCHHHHHHHHTTTSCEEEEEESCCC
T ss_pred CEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCCc-eeeccCCcCHHHHHHHHhhcccchhhhccccc
Confidence 46999995 999998888888788 4899999999999988877653 1111 1122222 22211 236888888765
Q ss_pred CchHHHHHHhhcccCCCCCEEEcCCC
Q psy9637 79 GSAVDDFIDKLVPLLEKGDIIIDGGN 104 (490)
Q Consensus 79 ~~~v~~vl~~l~~~l~~g~iiId~s~ 104 (490)
.. .++.....++++-.++-.|.
T Consensus 108 ~~----~~~~a~~~l~~~G~iv~~G~ 129 (170)
T d1jvba2 108 EK----TLSVYPKALAKQGKYVMVGL 129 (170)
T ss_dssp HH----HHTTGGGGEEEEEEEEECCS
T ss_pred ch----HHHhhhhhcccCCEEEEecc
Confidence 32 23444455556655555543
|
| >d1oi7a1 c.2.1.8 (A:1-121) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain species: Thermus thermophilus [TaxId: 274]
Probab=94.16 E-value=0.21 Score=39.96 Aligned_cols=111 Identities=17% Similarity=0.120 Sum_probs=81.7
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHHCCCeEEE-EeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCch
Q psy9637 4 KGDIGLIGL-AVMGQNLILNMNDHGFTVVA-YNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSA 81 (490)
Q Consensus 4 ~~~IgiIGl-G~MG~~lA~~L~~~G~~V~v-~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~ 81 (490)
..||-+-|. |+.|+..++++.+.|-+|+. ..+. +- |..-..+-.+++.+|++++- .+|.-++.||+..+
T Consensus 7 ~trVivQGiTG~~G~~ht~~m~~yGT~iVaGVtPg--kg------G~~~~giPVf~tV~eAv~~~-~~d~SvIfVPp~~a 77 (121)
T d1oi7a1 7 ETRVLVQGITGREGQFHTKQMLTYGTKIVAGVTPG--KG------GMEVLGVPVYDTVKEAVAHH-EVDASIIFVPAPAA 77 (121)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTT--CT------TCEETTEEEESSHHHHHHHS-CCSEEEECCCHHHH
T ss_pred CCcEEEEcCCCcHHHHHHHHHHHhCCceEeeeecC--CC------CcEEECCchHhhHHHHHHhc-CCeEEEEeeCHHHH
Confidence 468999997 99999999999999988764 3332 11 11112355789999999884 69999999999877
Q ss_pred HHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccccc
Q psy9637 82 VDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYV 125 (490)
Q Consensus 82 v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~l 125 (490)
.+.+++.+...+ ..+|+-.-.....|..+..+.++.++.+.+
T Consensus 78 ~dAi~EAi~agI--~liv~ITEgVPv~Dm~~i~~~~~~~~~~li 119 (121)
T d1oi7a1 78 ADAALEAAHAGI--PLIVLITEGIPTLDMVRAVEEIKALGSRLI 119 (121)
T ss_dssp HHHHHHHHHTTC--SEEEECCSCCCHHHHHHHHHHHHHHTCEEE
T ss_pred HHHHHHHHhCCC--cEEEEecCCCCHHHHHHHHHHHHhCCCEEe
Confidence 777777776544 245555556677787888888888877654
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.10 E-value=0.099 Score=47.53 Aligned_cols=86 Identities=14% Similarity=0.208 Sum_probs=56.5
Q ss_pred cEEEE-c-ccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEe--cCCCch
Q psy9637 6 DIGLI-G-LAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMML--VKAGSA 81 (490)
Q Consensus 6 ~IgiI-G-lG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~--vp~~~~ 81 (490)
|+.+| | .+-+|..+|+.|++.|++|++.+|++++.++..+.-.. .....++..+. +.+.+.
T Consensus 4 KvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~---------------~~~~~~~~~~~~Dv~~~~~ 68 (254)
T d2gdza1 4 KVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHE---------------QFEPQKTLFIQCDVADQQQ 68 (254)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTT---------------TSCGGGEEEEECCTTSHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHH---------------hcCCCcEEEEEeecCCHHH
Confidence 55666 5 57799999999999999999999999988776543211 00012333332 344456
Q ss_pred HHHHHHhhcccCCCCCEEEcCCCCC
Q psy9637 82 VDDFIDKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 82 v~~vl~~l~~~l~~g~iiId~s~~~ 106 (490)
++++++.+.....+=|++|+.....
T Consensus 69 v~~~~~~~~~~~G~iDilVnnAg~~ 93 (254)
T d2gdza1 69 LRDTFRKVVDHFGRLDILVNNAGVN 93 (254)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred HHHHHHHHHHHcCCcCeeccccccc
Confidence 6777777766555557888765443
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=94.02 E-value=0.028 Score=51.74 Aligned_cols=86 Identities=13% Similarity=0.225 Sum_probs=57.6
Q ss_pred CcEEEE--cccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEe--cCCCc
Q psy9637 5 GDIGLI--GLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMML--VKAGS 80 (490)
Q Consensus 5 ~~IgiI--GlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~--vp~~~ 80 (490)
-|+.+| |.+-+|..+|+.|+++|++|++.+|++++++++.++-.. . .....++..+. +.+..
T Consensus 5 gKvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~l~~------~--------~~~~~~~~~~~~Dvt~~~ 70 (264)
T d1spxa_ 5 EKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILA------A--------GVSEQNVNSVVADVTTDA 70 (264)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH------T--------TCCGGGEEEEECCTTSHH
T ss_pred CCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh------c--------CCCcCceEEEEccCCCHH
Confidence 367777 568899999999999999999999999988876543110 0 00002333332 34445
Q ss_pred hHHHHHHhhcccCCCCCEEEcCCC
Q psy9637 81 AVDDFIDKLVPLLEKGDIIIDGGN 104 (490)
Q Consensus 81 ~v~~vl~~l~~~l~~g~iiId~s~ 104 (490)
.++++++.+.....+=|++|+...
T Consensus 71 ~v~~~~~~~~~~~g~iDilvnnAG 94 (264)
T d1spxa_ 71 GQDEILSTTLGKFGKLDILVNNAG 94 (264)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHHHHhCCCCEeecccc
Confidence 667777777665556678887654
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=93.99 E-value=0.068 Score=49.06 Aligned_cols=80 Identities=16% Similarity=0.162 Sum_probs=53.2
Q ss_pred cEEEE--cccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEe--cCCCch
Q psy9637 6 DIGLI--GLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMML--VKAGSA 81 (490)
Q Consensus 6 ~IgiI--GlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~--vp~~~~ 81 (490)
|+.+| |.+-+|..+|+.|+++|++|++.||++++.+++.++-... ..+.++. +.+.+.
T Consensus 7 KvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~------------------~~~~~~~~Dv~~~~~ 68 (268)
T d2bgka1 7 KVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGSP------------------DVISFVHCDVTKDED 68 (268)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCT------------------TTEEEEECCTTCHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcCC------------------CceEEEEccCCCHHH
Confidence 56666 4677999999999999999999999999888776542110 1122111 234456
Q ss_pred HHHHHHhhcccCCCCCEEEcCC
Q psy9637 82 VDDFIDKLVPLLEKGDIIIDGG 103 (490)
Q Consensus 82 v~~vl~~l~~~l~~g~iiId~s 103 (490)
++.+++.+.....+=|++|...
T Consensus 69 v~~~~~~~~~~~g~iD~lVnnA 90 (268)
T d2bgka1 69 VRNLVDTTIAKHGKLDIMFGNV 90 (268)
T ss_dssp HHHHHHHHHHHHSCCCEEEECC
T ss_pred HHHHHHHHHHHcCCcceecccc
Confidence 6677766665555556777643
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=93.97 E-value=0.097 Score=47.71 Aligned_cols=81 Identities=14% Similarity=0.212 Sum_probs=53.9
Q ss_pred cEEEE--cccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEec--CCCch
Q psy9637 6 DIGLI--GLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLV--KAGSA 81 (490)
Q Consensus 6 ~IgiI--GlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~v--p~~~~ 81 (490)
|+.+| |.+-+|..+|+.|++.|++|++.+|++++++++.++-. +. ..+++.+.+ .+.+.
T Consensus 12 K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~---------------~~--g~~~~~~~~Dvs~~~~ 74 (255)
T d1fmca_ 12 KCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQ---------------QL--GGQAFACRCDITSEQE 74 (255)
T ss_dssp CEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHH---------------HT--TCCEEEEECCTTCHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH---------------Hc--CCcEEEEEccCCCHHH
Confidence 57777 56889999999999999999999999988877654211 10 023333332 33345
Q ss_pred HHHHHHhhcccCCCCCEEEcCC
Q psy9637 82 VDDFIDKLVPLLEKGDIIIDGG 103 (490)
Q Consensus 82 v~~vl~~l~~~l~~g~iiId~s 103 (490)
++++++.+...+.+=|++|...
T Consensus 75 ~~~~~~~~~~~~g~iDilvnnA 96 (255)
T d1fmca_ 75 LSALADFAISKLGKVDILVNNA 96 (255)
T ss_dssp HHHHHHHHHHHHSSCCEEEECC
T ss_pred HHHHHHHHHHHcCCCCEeeeCC
Confidence 6666666665555556777654
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=93.95 E-value=0.057 Score=50.11 Aligned_cols=40 Identities=15% Similarity=0.243 Sum_probs=35.1
Q ss_pred cEEEE--cccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q psy9637 6 DIGLI--GLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLA 45 (490)
Q Consensus 6 ~IgiI--GlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~ 45 (490)
|+.+| |.+-+|..+|+.|+++|++|++.+|+.++.++..+
T Consensus 26 K~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~~l~~~~~ 67 (294)
T d1w6ua_ 26 KVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAE 67 (294)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHH
Confidence 67777 68999999999999999999999999988776553
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Probab=93.94 E-value=0.056 Score=51.02 Aligned_cols=31 Identities=13% Similarity=0.294 Sum_probs=28.8
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCeEEEEeC
Q psy9637 5 GDIGLIG-LAVMGQNLILNMNDHGFTVVAYNR 35 (490)
Q Consensus 5 ~~IgiIG-lG~MG~~lA~~L~~~G~~V~v~dr 35 (490)
|||-|+| .|.+|+.+++.|+++||+|++.||
T Consensus 1 MKiLItG~tGfIG~~l~~~L~~~g~~V~~~d~ 32 (338)
T d1udca_ 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDN 32 (338)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEEC
Confidence 5899997 699999999999999999999986
|
| >d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=93.93 E-value=0.0037 Score=55.97 Aligned_cols=28 Identities=21% Similarity=0.347 Sum_probs=25.2
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEE
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVA 32 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v 32 (490)
|||.|||.|.+|...|..|+++|++|++
T Consensus 1 mkV~VIGaGi~GlstA~~L~~~G~~v~v 28 (246)
T d1kifa1 1 MRVVVIGAGVIGLSTALCIHERYHSVLQ 28 (246)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHHTTTSS
T ss_pred CEEEEECchHHHHHHHHHHHHCCCCceE
Confidence 5899999999999999999999986543
|
| >d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Escherichia coli [TaxId: 562]
Probab=93.93 E-value=0.015 Score=49.76 Aligned_cols=102 Identities=14% Similarity=0.125 Sum_probs=52.4
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHHC-CCeEE-EEeCChHHHH--HHHH-cccCCCCeeccCCHHHHHhhCCCCcEEEEecC
Q psy9637 4 KGDIGLIGL-AVMGQNLILNMNDH-GFTVV-AYNRTTAKVD--SFLA-NEAKGTNIIGAHSLEELVKNLKKPRRVMMLVK 77 (490)
Q Consensus 4 ~~~IgiIGl-G~MG~~lA~~L~~~-G~~V~-v~dr~~~~~~--~l~~-~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp 77 (490)
.+||+|+|+ |+||+.+++.+.+. +++++ +++|.....- .+.+ .+.....+....+++++... +|+||=-..
T Consensus 4 ~ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~---~DViIDFs~ 80 (162)
T d1diha1 4 NIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAVKDD---FDVFIDFTR 80 (162)
T ss_dssp BEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCEESCSTTTTTS---CSEEEECSC
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccchhccchhhhhhccccCCceeeccHHHHhcc---cceEEEecc
Confidence 479999995 99999999988765 66655 4565432100 0000 00001112234444444443 676664443
Q ss_pred CCchHHHHHHhhcccCCCCCEEEcCCCCChHHHHH
Q psy9637 78 AGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDR 112 (490)
Q Consensus 78 ~~~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~ 112 (490)
+ ..+.+.++.. ++.+.-+|-++|+...+..+
T Consensus 81 p-~~~~~~~~~a---~~~~~~~ViGTTG~~~~~~~ 111 (162)
T d1diha1 81 P-EGTLNHLAFC---RQHGKGMVIGTTGFDEAGKQ 111 (162)
T ss_dssp H-HHHHHHHHHH---HHTTCEEEECCCCCCHHHHH
T ss_pred H-HHHHHHHHHH---HhccceeEEecCCCcHHHHH
Confidence 3 2444444332 23455566666665443333
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=93.89 E-value=0.067 Score=48.78 Aligned_cols=79 Identities=13% Similarity=0.191 Sum_probs=53.0
Q ss_pred cEEEE-c-ccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEe--cCCCch
Q psy9637 6 DIGLI-G-LAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMML--VKAGSA 81 (490)
Q Consensus 6 ~IgiI-G-lG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~--vp~~~~ 81 (490)
|+.+| | .+-+|..+|+.|+++|++|++.||++++++++.++.. .+.+++. +.+...
T Consensus 7 K~alITGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~Dv~~~~~ 66 (253)
T d1hxha_ 7 KVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAELG--------------------ERSMFVRHDVSSEAD 66 (253)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHC--------------------TTEEEECCCTTCHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhC--------------------CCeEEEEeecCCHHH
Confidence 56666 4 5679999999999999999999999988877664321 1222222 233345
Q ss_pred HHHHHHhhcccCCCCCEEEcCCC
Q psy9637 82 VDDFIDKLVPLLEKGDIIIDGGN 104 (490)
Q Consensus 82 v~~vl~~l~~~l~~g~iiId~s~ 104 (490)
++++++.+.....+=|++|....
T Consensus 67 ~~~~~~~~~~~~g~iDilVnnAG 89 (253)
T d1hxha_ 67 WTLVMAAVQRRLGTLNVLVNNAG 89 (253)
T ss_dssp HHHHHHHHHHHHCSCCEEEECCC
T ss_pred HHHHHHHHHHHhCCCCeEEeccc
Confidence 66666666655555577776543
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Probab=93.84 E-value=0.023 Score=51.45 Aligned_cols=34 Identities=21% Similarity=0.318 Sum_probs=31.1
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-eEEEEeCChH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGF-TVVAYNRTTA 38 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~ 38 (490)
++|.|||.|.-|..+|..|+++|+ +|++++++++
T Consensus 2 ~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~ 36 (288)
T d3c96a1 2 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSE 36 (288)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSS
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence 589999999999999999999995 9999998753
|
| >d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermotoga maritima [TaxId: 2336]
Probab=93.81 E-value=0.061 Score=48.40 Aligned_cols=37 Identities=11% Similarity=0.182 Sum_probs=31.1
Q ss_pred cEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChHHHHH
Q psy9637 6 DIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTAKVDS 42 (490)
Q Consensus 6 ~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~ 42 (490)
++-|.|. +-+|..+|+.|++.|++|++.+|+++.+++
T Consensus 6 ~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~~~l~~ 43 (234)
T d1o5ia_ 6 GVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLKR 43 (234)
T ss_dssp EEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHh
Confidence 4555564 779999999999999999999999876654
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=93.79 E-value=0.11 Score=44.37 Aligned_cols=74 Identities=11% Similarity=0.076 Sum_probs=51.3
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHcccCCCCeecc-CC--HHHHHhhC--CCCcEEEEecCC
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGF-TVVAYNRTTAKVDSFLANEAKGTNIIGA-HS--LEELVKNL--KKPRRVMMLVKA 78 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~g~~~~~i~~~-~s--~~e~v~~l--~~~dvIil~vp~ 78 (490)
.+|.|+|+|-+|...+..+...|. +|++.|+++++.+...+.|+.. -+... .+ ..+..... ...|++|.++..
T Consensus 29 ~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa~~-~i~~~~~d~~~~~~~~~~~~~G~d~vid~~g~ 107 (174)
T d1p0fa2 29 STCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATE-CLNPKDYDKPIYEVICEKTNGGVDYAVECAGR 107 (174)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSE-EECGGGCSSCHHHHHHHHTTSCBSEEEECSCC
T ss_pred CEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCCcE-EEcCCCchhHHHHHHHHhcCCCCcEEEEcCCC
Confidence 469999999999999999988886 7989999999999888777541 11111 11 23332221 236888887766
Q ss_pred C
Q psy9637 79 G 79 (490)
Q Consensus 79 ~ 79 (490)
.
T Consensus 108 ~ 108 (174)
T d1p0fa2 108 I 108 (174)
T ss_dssp H
T ss_pred c
Confidence 4
|
| >d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Hypothetical protein HI0933 species: Haemophilus influenzae [TaxId: 727]
Probab=93.61 E-value=0.021 Score=51.87 Aligned_cols=45 Identities=16% Similarity=0.183 Sum_probs=38.4
Q ss_pred CCCCCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q psy9637 1 MAAKGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLA 45 (490)
Q Consensus 1 M~~~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~ 45 (490)
|++..+|-|||.|..|...|..|+++|++|.++++++..-.++..
T Consensus 1 M~~~~DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~~~G~k~~~ 45 (253)
T d2gqfa1 1 MSQYSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILM 45 (253)
T ss_dssp CEEECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHH
T ss_pred CCCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCceEe
Confidence 766678999999999999999999999999999998765444443
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=93.56 E-value=0.066 Score=48.77 Aligned_cols=82 Identities=15% Similarity=0.265 Sum_probs=52.8
Q ss_pred cEEEE-c-ccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEe--cCCCch
Q psy9637 6 DIGLI-G-LAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMML--VKAGSA 81 (490)
Q Consensus 6 ~IgiI-G-lG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~--vp~~~~ 81 (490)
|+.+| | .+-+|..+|+.|++.|++|++.+|++++.++..++ +.+.. ..+++.+. +.+...
T Consensus 6 K~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~---------------l~~~~-g~~~~~~~~Dv~~~~~ 69 (251)
T d1vl8a_ 6 RVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQK---------------LTEKY-GVETMAFRCDVSNYEE 69 (251)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH---------------HHHHH-CCCEEEEECCTTCHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH---------------HHHHh-CCcEEEEEccCCCHHH
Confidence 45554 5 57799999999999999999999999887765432 11110 02333332 234445
Q ss_pred HHHHHHhhcccCCCCCEEEcCC
Q psy9637 82 VDDFIDKLVPLLEKGDIIIDGG 103 (490)
Q Consensus 82 v~~vl~~l~~~l~~g~iiId~s 103 (490)
++.+++.+.....+=|++|+..
T Consensus 70 v~~~~~~~~~~~g~iDiLVnnA 91 (251)
T d1vl8a_ 70 VKKLLEAVKEKFGKLDTVVNAA 91 (251)
T ss_dssp HHHHHHHHHHHHSCCCEEEECC
T ss_pred HHHHHHHHHHHcCCCCEEEECC
Confidence 6667776666555557777654
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=93.55 E-value=0.047 Score=50.36 Aligned_cols=84 Identities=13% Similarity=0.226 Sum_probs=54.5
Q ss_pred cEEEE--cccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEe--cCCCch
Q psy9637 6 DIGLI--GLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMML--VKAGSA 81 (490)
Q Consensus 6 ~IgiI--GlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~--vp~~~~ 81 (490)
|+.+| |.+-+|..+|+.|+++|++|++.+|++++++++.+.-.. . .....++..+. +.+...
T Consensus 6 K~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~~~l~~~~~~l~~------~--------~~~~~~~~~~~~Dvs~~~~ 71 (272)
T d1xkqa_ 6 KTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILK------S--------GVSEKQVNSVVADVTTEDG 71 (272)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHT------T--------TCCGGGEEEEECCTTSHHH
T ss_pred CEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh------c--------CCCCCceEEEEccCCCHHH
Confidence 45555 457899999999999999999999999988876643211 0 00002333333 234446
Q ss_pred HHHHHHhhcccCCCCCEEEcCC
Q psy9637 82 VDDFIDKLVPLLEKGDIIIDGG 103 (490)
Q Consensus 82 v~~vl~~l~~~l~~g~iiId~s 103 (490)
++.+++.+.....+=|++|+..
T Consensus 72 v~~~~~~~~~~~g~iDilvnnA 93 (272)
T d1xkqa_ 72 QDQIINSTLKQFGKIDVLVNNA 93 (272)
T ss_dssp HHHHHHHHHHHHSCCCEEEECC
T ss_pred HHHHHHHHHHHhCCceEEEeCC
Confidence 6677776666555557777654
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.55 E-value=0.033 Score=50.86 Aligned_cols=34 Identities=21% Similarity=0.347 Sum_probs=31.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCCh
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTT 37 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~ 37 (490)
..||.|||.|.-|..-|..|+++|++|++++.+.
T Consensus 5 ~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~ 38 (449)
T d2dw4a2 5 TGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARD 38 (449)
T ss_dssp CCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 3579999999999999999999999999998763
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.55 E-value=0.037 Score=44.14 Aligned_cols=34 Identities=18% Similarity=0.202 Sum_probs=31.4
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTA 38 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~ 38 (490)
.+|.|||.|.+|.-+|..|.+.|.+|+++.|.+.
T Consensus 23 ~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~ 56 (117)
T d1ebda2 23 KSLVVIGGGYIGIELGTAYANFGTKVTILEGAGE 56 (117)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred CeEEEECCCccceeeeeeecccccEEEEEEecce
Confidence 5899999999999999999999999999987654
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=93.53 E-value=0.046 Score=44.08 Aligned_cols=35 Identities=17% Similarity=0.272 Sum_probs=32.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChH
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTA 38 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~ 38 (490)
.++|.|||.|.+|.-+|..|++.|++|+++++++.
T Consensus 30 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ 64 (121)
T d1d7ya2 30 QSRLLIVGGGVIGLELAATARTAGVHVSLVETQPR 64 (121)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred CCeEEEECcchhHHHHHHHhhcccceEEEEeeccc
Confidence 36899999999999999999999999999988754
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Probab=93.49 E-value=0.073 Score=50.32 Aligned_cols=38 Identities=24% Similarity=0.255 Sum_probs=33.5
Q ss_pred CCCcEEEEc-ccHHHHHHHHHHHHCCCeEEEEeCChHHH
Q psy9637 3 AKGDIGLIG-LAVMGQNLILNMNDHGFTVVAYNRTTAKV 40 (490)
Q Consensus 3 ~~~~IgiIG-lG~MG~~lA~~L~~~G~~V~v~dr~~~~~ 40 (490)
.+++|.|+| .|.+|+.++..|+++||+|++..|++++.
T Consensus 2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~~~~ 40 (350)
T d1xgka_ 2 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGL 40 (350)
T ss_dssp CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSH
T ss_pred CCCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCcchh
Confidence 467899998 59999999999999999999998876543
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=93.42 E-value=0.085 Score=46.13 Aligned_cols=44 Identities=14% Similarity=0.092 Sum_probs=36.1
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHccc
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGF-TVVAYNRTTAKVDSFLANEA 48 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~g~ 48 (490)
.+|.|+|+|.+|...+..+...|. .|++.|+++++++...+.|.
T Consensus 27 ~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga 71 (195)
T d1kola2 27 STVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGF 71 (195)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTC
T ss_pred CEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhccc
Confidence 579999999999777776666676 78899999999988877654
|
| >d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=93.35 E-value=0.027 Score=50.13 Aligned_cols=34 Identities=18% Similarity=0.212 Sum_probs=30.4
Q ss_pred CcEEEEcccHHHHHHHHHHHHC--CCeEEEEeCChH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDH--GFTVVAYNRTTA 38 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~--G~~V~v~dr~~~ 38 (490)
+||+|||.|.-|..-|..|.++ ||+|++||+.+.
T Consensus 2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~ 37 (230)
T d1cjca2 2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLV 37 (230)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSS
T ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence 4899999999999999999875 789999998854
|
| >d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Helicobacter pylori [TaxId: 210]
Probab=93.34 E-value=0.11 Score=47.23 Aligned_cols=84 Identities=11% Similarity=0.092 Sum_probs=52.2
Q ss_pred CcEEEEcc-c--HHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCch
Q psy9637 5 GDIGLIGL-A--VMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSA 81 (490)
Q Consensus 5 ~~IgiIGl-G--~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~ 81 (490)
+++-|.|. | -+|.++|+.|+++|++|++.+|+++..+.+. ++.+....+.++..-+.....
T Consensus 6 K~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~~~~~~~----------------~l~~~~~~~~~~~~d~~~~~~ 69 (274)
T d2pd4a1 6 KKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESLEKRVR----------------PIAQELNSPYVYELDVSKEEH 69 (274)
T ss_dssp CEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTTTHHHHH----------------HHHHHTTCCCEEECCTTCHHH
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH----------------HHHhhCCceeEeeecccchhh
Confidence 45667775 5 4999999999999999999999854222221 112222224444444555555
Q ss_pred HHHHHHhhcccCCCCCEEEcCCC
Q psy9637 82 VDDFIDKLVPLLEKGDIIIDGGN 104 (490)
Q Consensus 82 v~~vl~~l~~~l~~g~iiId~s~ 104 (490)
++++++.+...+.+-+++|....
T Consensus 70 ~~~~~~~~~~~~g~id~lV~nag 92 (274)
T d2pd4a1 70 FKSLYNSVKKDLGSLDFIVHSVA 92 (274)
T ss_dssp HHHHHHHHHHHTSCEEEEEECCC
T ss_pred HHHHHHHHHHHcCCCCeEEeecc
Confidence 66666666666555566665443
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=93.32 E-value=0.041 Score=43.93 Aligned_cols=33 Identities=15% Similarity=0.218 Sum_probs=31.0
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCCh
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTT 37 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~ 37 (490)
.+|.|||.|..|.-+|..|.+.|++|++++|.+
T Consensus 22 ~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~ 54 (116)
T d1gesa2 22 ERVAVVGAGYIGVELGGVINGLGAKTHLFEMFD 54 (116)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CEEEEECCChhhHHHHHHhhccccEEEEEeecc
Confidence 579999999999999999999999999999864
|
| >d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.28 E-value=0.087 Score=45.23 Aligned_cols=90 Identities=13% Similarity=0.159 Sum_probs=57.3
Q ss_pred CcEEEEccc-HHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccC----CCC---ee--ccCCHHHHHhhCCCCcEEEE
Q psy9637 5 GDIGLIGLA-VMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAK----GTN---II--GAHSLEELVKNLKKPRRVMM 74 (490)
Q Consensus 5 ~~IgiIGlG-~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~----~~~---i~--~~~s~~e~v~~l~~~dvIil 74 (490)
+++.|||-+ .+|.+||..|+++|..|+.++.+.... +. .... ..+ +. ..+.+++.... +|+||.
T Consensus 30 K~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~lk~~~~~---aDIvIs 103 (171)
T d1edza1 30 KKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQK--FT-RGESLKLNKHHVEDLGEYSEDLLKKCSLD---SDVVIT 103 (171)
T ss_dssp CEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEE--EE-SCCCSSCCCCEEEEEEECCHHHHHHHHHH---CSEEEE
T ss_pred CEEEEECCccccHHHHHHHHHHCCCEEEEeccccccc--cc-cccceeeeeeccccccccchhHHhhcccc---CCEEEE
Confidence 579999976 569999999999999999988652210 00 0000 000 00 01125555555 899999
Q ss_pred ecCCCchHHHHHHhhcccCCCCCEEEcCCCC
Q psy9637 75 LVKAGSAVDDFIDKLVPLLEKGDIIIDGGNS 105 (490)
Q Consensus 75 ~vp~~~~v~~vl~~l~~~l~~g~iiId~s~~ 105 (490)
+++.+.-. + -...+++|+++||.|..
T Consensus 104 avG~p~~~---i--~~d~ik~GavvIDvGi~ 129 (171)
T d1edza1 104 GVPSENYK---F--PTEYIKEGAVCINFACT 129 (171)
T ss_dssp CCCCTTCC---B--CTTTSCTTEEEEECSSS
T ss_pred ccCCCccc---c--ChhhcccCceEeecccc
Confidence 99885210 0 01356899999999864
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=93.22 E-value=0.14 Score=46.71 Aligned_cols=40 Identities=15% Similarity=0.321 Sum_probs=33.8
Q ss_pred cEEEE--cccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q psy9637 6 DIGLI--GLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLA 45 (490)
Q Consensus 6 ~IgiI--GlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~ 45 (490)
|+.+| |.+-+|..+|+.|+++|++|++.+|+++++++..+
T Consensus 9 K~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~ 50 (259)
T d1xq1a_ 9 KTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLS 50 (259)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 45555 45779999999999999999999999998877654
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=93.21 E-value=0.048 Score=43.70 Aligned_cols=34 Identities=21% Similarity=0.391 Sum_probs=31.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCCh
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTT 37 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~ 37 (490)
..+|.|||.|..|.-+|..|++.|.+|++++|.+
T Consensus 22 p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~ 55 (117)
T d1onfa2 22 SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGN 55 (117)
T ss_dssp CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSS
T ss_pred CCEEEEECCchHHHHHHHHHHhccccceeeehhc
Confidence 3589999999999999999999999999999853
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.15 E-value=0.045 Score=44.18 Aligned_cols=33 Identities=15% Similarity=0.183 Sum_probs=31.0
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCCh
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTT 37 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~ 37 (490)
.++.|||.|.+|.-+|..|.+.|.+|+++++++
T Consensus 24 ~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~ 56 (122)
T d1v59a2 24 KRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQP 56 (122)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CeEEEECCCchHHHHHHHHHhhCcceeEEEecc
Confidence 589999999999999999999999999998865
|
| >d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: Amyloid beta precursor protein-binding protein 1, APPBP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.14 E-value=0.05 Score=55.29 Aligned_cols=124 Identities=13% Similarity=0.151 Sum_probs=75.2
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHcc-cCCCCe--eccCCHHHHHhhCCCCcEEEEecCCCc
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGF-TVVAYNRTTAKVDSFLANE-AKGTNI--IGAHSLEELVKNLKKPRRVMMLVKAGS 80 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~g-~~~~~i--~~~~s~~e~v~~l~~~dvIil~vp~~~ 80 (490)
.+|.|||+|..|..+++||+..|. +++++|.+.-....+.... .....+ .-+....+.+..| .|++-+..+..
T Consensus 26 s~VlvvG~gglG~Ei~knLvl~GVg~itivD~d~v~~sdL~rqf~~~~~diGk~ka~~~~~~L~~l-Np~v~i~~~~~-- 102 (529)
T d1yova1 26 AHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEAAMEFLQEL-NSDVSGSFVEE-- 102 (529)
T ss_dssp CEEEECCCSHHHHHHHHHHHTTTCSEEEEECCSBCCHHHHHHCTTCCGGGTTSBHHHHHHHHHHTT-CTTSBCCEESS--
T ss_pred CCEEEECCCHHHHHHHHHHHHhcCCEEEEEcCCcCChhhcCchhcCChhhCCCHHHHHHHHHHHHh-CCCCcEEEEcC--
Confidence 589999999999999999999996 7999987654444443321 110000 0112222333333 25554444443
Q ss_pred hHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccccCCCCC
Q psy9637 81 AVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGCGVSGG 132 (490)
Q Consensus 81 ~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~~vsGg 132 (490)
...+.++.-...+..-++||++.- .+.....+.+.+.+.++.|+.+.+.|-
T Consensus 103 ~~~~~~~~~~~~~~~~dvVv~~~~-~~~~~~~l~~~c~~~~ip~i~~~~~G~ 153 (529)
T d1yova1 103 SPENLLDNDPSFFCRFTVVVATQL-PESTSLRLADVLWNSQIPLLICRTYGL 153 (529)
T ss_dssp CHHHHHHSCGGGGGGCSEEEEESC-CHHHHHHHHHHHHHHTCCEEEEEEETT
T ss_pred CchhhhhhHHHHhcCCCEEEECCC-CHHHHHHHHHHHHHcCCCEEEEeccCC
Confidence 344555443445556688888754 445555556888888999988876553
|
| >d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=93.13 E-value=0.2 Score=45.21 Aligned_cols=112 Identities=19% Similarity=0.187 Sum_probs=69.3
Q ss_pred CcEEEEcccHHHHHHHHHHHH-CCCeEEEE-eC----------ChHHHHHHHHcccCCC---CeeccCCHHHHHhhCCCC
Q psy9637 5 GDIGLIGLAVMGQNLILNMND-HGFTVVAY-NR----------TTAKVDSFLANEAKGT---NIIGAHSLEELVKNLKKP 69 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~-~G~~V~v~-dr----------~~~~~~~l~~~g~~~~---~i~~~~s~~e~v~~l~~~ 69 (490)
++|.|-|.|++|..+|+.|.+ .|..|+.. |. +.+.+.+.......-. ... .-+.+++... ++
T Consensus 33 ~~v~IqGfGnVG~~~a~~L~~~~G~kvv~vsD~~g~i~~~~G~d~~~l~~~~~~~~~~~~~~~~~-~~~~~~i~~~--~~ 109 (239)
T d1gtma1 33 KTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDSKGGIYNPDGLNADEVLKWKNEHGSVKDFPGAT-NITNEELLEL--EV 109 (239)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCEEEEEEEECHHHHHHHHHHHSSSTTCTTSE-EECHHHHHHS--CC
T ss_pred CEEEEECCCHHHHHHHHHHHHhcCcceeeccccccceecCCcCCHHHHHHHHHhccccccCCCCe-eecccccccc--cc
Confidence 689999999999999999975 58877643 43 2333333333221100 011 2355666653 48
Q ss_pred cEEEEecCCCchHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccc
Q psy9637 70 RRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVG 126 (490)
Q Consensus 70 dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld 126 (490)
|+++-|-..+...++.+ +.+ .-++|+...|... +.+..+.|.++|+.|+.
T Consensus 110 DIl~PcA~~~~I~~~~a----~~i-~ak~I~e~AN~p~--t~ea~~~L~~rgI~~iP 159 (239)
T d1gtma1 110 DVLAPAAIEEVITKKNA----DNI-KAKIVAEVANGPV--TPEADEILFEKGILQIP 159 (239)
T ss_dssp SEEEECSCSCCBCTTGG----GGC-CCSEEECCSSSCB--CHHHHHHHHHTTCEEEC
T ss_pred cEEeeccccccccHHHH----Hhc-cccEEEecCCCCC--CHHHHHHHHHCCCEEec
Confidence 99887776654333333 334 3478999888653 33445778999998764
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.09 E-value=0.099 Score=47.99 Aligned_cols=83 Identities=13% Similarity=0.131 Sum_probs=53.5
Q ss_pred CcEEEE--cccHHHHHHHHHHHHC-CCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCch
Q psy9637 5 GDIGLI--GLAVMGQNLILNMNDH-GFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSA 81 (490)
Q Consensus 5 ~~IgiI--GlG~MG~~lA~~L~~~-G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~ 81 (490)
++|++| |..-+|..+|+.|++. |+.|++++|++++.++..++-. +.-..+.++.+=|.+.+.
T Consensus 3 ~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~---------------~~~~~~~~~~~Dvs~~~s 67 (275)
T d1wmaa1 3 IHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQ---------------AEGLSPRFHQLDIDDLQS 67 (275)
T ss_dssp CCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHH---------------HTTCCCEEEECCTTCHHH
T ss_pred CeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHH---------------hcCCcEEEEEEecCCHHH
Confidence 589999 6788999999999975 9999999999998877654311 000013333333444445
Q ss_pred HHHHHHhhcccCCCCCEEEcC
Q psy9637 82 VDDFIDKLVPLLEKGDIIIDG 102 (490)
Q Consensus 82 v~~vl~~l~~~l~~g~iiId~ 102 (490)
+++.++.+.....+=|++|+.
T Consensus 68 v~~~~~~~~~~~g~iDiLVnN 88 (275)
T d1wmaa1 68 IRALRDFLRKEYGGLDVLVNN 88 (275)
T ss_dssp HHHHHHHHHHHHSSEEEEEEC
T ss_pred HHHHHHHHHHhcCCcEEEEEc
Confidence 666666555443333566654
|
| >d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative semialdehyde dehydrogenase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=93.07 E-value=0.078 Score=45.92 Aligned_cols=96 Identities=14% Similarity=0.163 Sum_probs=50.4
Q ss_pred CCCcEEEEcc-cHHHHHHHHHHHHCC-CeEEEEeCChHHHHHHHHc--ccCCCCe-eccCCHHHHHhhCCCCcEEEEecC
Q psy9637 3 AKGDIGLIGL-AVMGQNLILNMNDHG-FTVVAYNRTTAKVDSFLAN--EAKGTNI-IGAHSLEELVKNLKKPRRVMMLVK 77 (490)
Q Consensus 3 ~~~~IgiIGl-G~MG~~lA~~L~~~G-~~V~v~dr~~~~~~~l~~~--g~~~~~i-~~~~s~~e~v~~l~~~dvIil~vp 77 (490)
++.||||||. |..|.-|.+.|.++- +++.....+...-+.+.+. ....... .......+.... +|++|+++|
T Consensus 4 ~kikVaIlGATGyvG~elirLL~~HP~~ei~~l~S~~~aG~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~Dvvf~alp 80 (183)
T d2cvoa1 4 EEVRIAVLGASGYTGAEIVRLLANHPQFRIKVMTADRKAGEQFGSVFPHLITQDLPNLVAVKDADFSN---VDAVFCCLP 80 (183)
T ss_dssp SCEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECSTTTTSCHHHHCGGGTTSCCCCCBCGGGCCGGG---CSEEEECCS
T ss_pred CccEEEEECcccHHHHHHHHHHHhCCCceEEEEeccccCCCccccccccccccccccchhhhhhhhcc---cceeeeccc
Confidence 4578999995 999999999999863 3555442221111111110 0000011 111122222333 899999999
Q ss_pred CCchHHHHHHhhcccCCCCCEEEcCCCCC
Q psy9637 78 AGSAVDDFIDKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 78 ~~~~v~~vl~~l~~~l~~g~iiId~s~~~ 106 (490)
.+ ...++... +.....+||.+...
T Consensus 81 ~~-~s~~~~~~----l~~~~~~v~~~~~~ 104 (183)
T d2cvoa1 81 HG-TTQEIIKG----LPQELKIVDLSADF 104 (183)
T ss_dssp SS-HHHHHHHT----SCSSCEEEECSSTT
T ss_pred cc-hHHHHHHH----HHhcCcccccchhh
Confidence 97 44444443 33344555555444
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=92.98 E-value=0.046 Score=44.02 Aligned_cols=34 Identities=26% Similarity=0.441 Sum_probs=31.3
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTA 38 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~ 38 (490)
.+|.|||.|..|.-+|..|++.|++|+++++++.
T Consensus 33 ~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~ 66 (122)
T d1xhca2 33 GEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAM 66 (122)
T ss_dssp SEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSC
T ss_pred CcEEEECCcHHHHHHHHHhhcccceEEEEecccc
Confidence 4799999999999999999999999999988753
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=92.96 E-value=0.095 Score=48.27 Aligned_cols=84 Identities=17% Similarity=0.237 Sum_probs=52.5
Q ss_pred cEEEE--cccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEe--cCCCch
Q psy9637 6 DIGLI--GLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMML--VKAGSA 81 (490)
Q Consensus 6 ~IgiI--GlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~--vp~~~~ 81 (490)
|+.|| |.+-+|..+|+.|++.|++|++.||++++++++.++-.. . ..+..++..+. +.+...
T Consensus 5 K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~------------~--~~~~~~~~~~~~Dv~~~~~ 70 (274)
T d1xhla_ 5 KSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILK------------A--GVPAEKINAVVADVTEASG 70 (274)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH------------T--TCCGGGEEEEECCTTSHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHH------------c--CCCCcceEEEEeeCCCHHH
Confidence 45555 457799999999999999999999999888776543110 0 00001222222 234446
Q ss_pred HHHHHHhhcccCCCCCEEEcCC
Q psy9637 82 VDDFIDKLVPLLEKGDIIIDGG 103 (490)
Q Consensus 82 v~~vl~~l~~~l~~g~iiId~s 103 (490)
++++++.+.....+=|++|+..
T Consensus 71 v~~~~~~~~~~~G~iDilVnnA 92 (274)
T d1xhla_ 71 QDDIINTTLAKFGKIDILVNNA 92 (274)
T ss_dssp HHHHHHHHHHHHSCCCEEEECC
T ss_pred HHHHHHHHHHHcCCceEEEeec
Confidence 6677766665554556777653
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=92.90 E-value=0.13 Score=46.29 Aligned_cols=77 Identities=14% Similarity=0.154 Sum_probs=50.8
Q ss_pred cEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEe--cCCCchH
Q psy9637 6 DIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMML--VKAGSAV 82 (490)
Q Consensus 6 ~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~--vp~~~~v 82 (490)
++-|.|. +.+|..+|+.|+++|++|++.+|+.+++++..++.. .+++.+. +.+.+.+
T Consensus 7 ~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~--------------------~~~~~~~~Dls~~~~i 66 (241)
T d2a4ka1 7 TILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAALE--------------------AEAIAVVADVSDPKAV 66 (241)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTCC--------------------SSEEEEECCTTSHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcC--------------------CceEEEEecCCCHHHH
Confidence 3444454 669999999999999999999999988776654311 1222221 3334456
Q ss_pred HHHHHhhcccCCCCCEEEcC
Q psy9637 83 DDFIDKLVPLLEKGDIIIDG 102 (490)
Q Consensus 83 ~~vl~~l~~~l~~g~iiId~ 102 (490)
++.++.+.....+=|++|..
T Consensus 67 ~~~~~~i~~~~g~iDiLinn 86 (241)
T d2a4ka1 67 EAVFAEALEEFGRLHGVAHF 86 (241)
T ss_dssp HHHHHHHHHHHSCCCEEEEG
T ss_pred HHHHHHHHHHhCCccEeccc
Confidence 66666666555555777664
|
| >d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: N,N-dimethylglycine oxidase species: Arthrobacter globiformis [TaxId: 1665]
Probab=92.89 E-value=0.04 Score=51.01 Aligned_cols=33 Identities=21% Similarity=0.451 Sum_probs=30.0
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-eEEEEeCCh
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGF-TVVAYNRTT 37 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~ 37 (490)
.+|.|||.|.+|.+.|..|++.|. +|+++|+++
T Consensus 2 ~dViIIGaGi~G~s~A~~La~~G~~~V~liE~~~ 35 (305)
T d1pj5a2 2 PRIVIIGAGIVGTNLADELVTRGWNNITVLDQGP 35 (305)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSC
T ss_pred CCEEEECcCHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence 379999999999999999999995 799999873
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.86 E-value=0.072 Score=45.38 Aligned_cols=44 Identities=16% Similarity=0.123 Sum_probs=37.9
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHccc
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEA 48 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~ 48 (490)
.+|.|+|. |.+|.....-....|.+|++.++++++.+.+.+.|+
T Consensus 30 ~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~~Ga 74 (174)
T d1yb5a2 30 ESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGA 74 (174)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTC
T ss_pred CEEEEEeccccccccccccccccCcccccccccccccccccccCc
Confidence 46999995 999998888888899999999999998888777665
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=92.85 E-value=0.12 Score=44.55 Aligned_cols=113 Identities=13% Similarity=0.119 Sum_probs=70.7
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccC---CCCee-ccCCHHHHHhhCCCCcEEEEecCCCc
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAK---GTNII-GAHSLEELVKNLKKPRRVMMLVKAGS 80 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~---~~~i~-~~~s~~e~v~~l~~~dvIil~vp~~~ 80 (490)
.+|-=||+|.=.. +..|++.+.+|+.+|++++.++...+.... ..+++ ...+..+.....+..|.|++..+. .
T Consensus 35 ~~VLDiGcGsG~~--s~~lA~~~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~~~~~D~v~~~~~~-~ 111 (186)
T d1l3ia_ 35 DVAVDVGCGTGGV--TLELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPDIDIAVVGGSG-G 111 (186)
T ss_dssp CEEEEESCTTSHH--HHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCCEEEEEESCCT-T
T ss_pred CEEEEEECCeEcc--cccccccceEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcccccCCcCEEEEeCcc-c
Confidence 3566677765333 334566778999999999988876543111 23442 245677777667779999977665 4
Q ss_pred hHHHHHHhhcccCCCCCEE-EcCCCCChHHHHHHHHHHHHccc
Q psy9637 81 AVDDFIDKLVPLLEKGDII-IDGGNSEYQDTDRRSKALEAKGL 122 (490)
Q Consensus 81 ~v~~vl~~l~~~l~~g~ii-Id~s~~~~~~~~~~~~~l~~~gi 122 (490)
...++++.+...|++|..+ +... .........+.+...+.
T Consensus 112 ~~~~~~~~~~~~LkpgG~lvi~~~--~~e~~~~~~~~l~~~~~ 152 (186)
T d1l3ia_ 112 ELQEILRIIKDKLKPGGRIIVTAI--LLETKFEAMECLRDLGF 152 (186)
T ss_dssp CHHHHHHHHHHTEEEEEEEEEEEC--BHHHHHHHHHHHHHTTC
T ss_pred cchHHHHHHHHHhCcCCEEEEEee--ccccHHHHHHHHHHcCC
Confidence 6788888888888777654 4332 22333444455555543
|
| >d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dehydrogenase/reductase SDR family member 6, DHRS6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.82 E-value=0.069 Score=48.41 Aligned_cols=41 Identities=20% Similarity=0.321 Sum_probs=34.9
Q ss_pred CcEEEE--cccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q psy9637 5 GDIGLI--GLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLA 45 (490)
Q Consensus 5 ~~IgiI--GlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~ 45 (490)
-|+.+| |.+.+|..+|+.|+++|++|++.+|++++++++.+
T Consensus 6 gK~alITGas~GIG~aia~~la~~G~~Vi~~~r~~~~l~~~~~ 48 (245)
T d2ag5a1 6 GKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQELEK 48 (245)
T ss_dssp TCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHGGGGG
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh
Confidence 367777 67999999999999999999999999887766543
|
| >d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=92.72 E-value=0.029 Score=52.56 Aligned_cols=33 Identities=12% Similarity=0.179 Sum_probs=30.9
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCCh
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTT 37 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~ 37 (490)
.+|.|||+|..|...|..|+++|++|.++++++
T Consensus 2 ~dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~ 34 (298)
T d1i8ta1 2 YDYIIVGSGLFGAVCANELKKLNKKVLVIEKRN 34 (298)
T ss_dssp EEEEEECCSHHHHHHHHHHGGGTCCEEEECSSS
T ss_pred ccEEEECCcHHHHHHHHHHHhCCCcEEEEECCC
Confidence 479999999999999999999999999999874
|
| >d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=92.63 E-value=0.12 Score=41.61 Aligned_cols=95 Identities=19% Similarity=0.303 Sum_probs=61.8
Q ss_pred CCCcEEEEccc-----------HHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcE
Q psy9637 3 AKGDIGLIGLA-----------VMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRR 71 (490)
Q Consensus 3 ~~~~IgiIGlG-----------~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dv 71 (490)
..+||-|||.| ..+...++.|.+.|+++++.|.||+.+ .+++. + +|.
T Consensus 3 ~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPeTV---------------std~d-~------aD~ 60 (121)
T d1a9xa4 3 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPETV---------------STDYD-T------SDR 60 (121)
T ss_dssp SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTTSS---------------TTSTT-S------SSE
T ss_pred CCCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChhhh---------------hcChh-h------cCc
Confidence 45789999997 677888999999999999999998742 22222 1 344
Q ss_pred -EEEecCCCchHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccccccc
Q psy9637 72 -VMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVGC 127 (490)
Q Consensus 72 -Iil~vp~~~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld~ 127 (490)
.|..+.. +.+.++++ .=+|..+++-.|. .....+...+.+.|+..++.
T Consensus 61 lYfeplt~-e~v~~Ii~----~E~p~~ii~~~GG---Qtalnla~~L~~~gv~iLGt 109 (121)
T d1a9xa4 61 LYFEPVTL-EDVLEIVR----IEKPKGVIVQYGG---QTPLKLARALEAAGVPVIGT 109 (121)
T ss_dssp EECCCCSH-HHHHHHHH----HHCCSEEECSSST---HHHHTTHHHHHHTTCCBCSS
T ss_pred eEEccCCH-HHHHHHHH----HhCCCEEEeehhh---hhHHHHHHHHHHcCCcEECC
Confidence 4444433 24444443 2246677777765 55566667777777655443
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=92.54 E-value=0.064 Score=43.22 Aligned_cols=33 Identities=15% Similarity=0.212 Sum_probs=30.8
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCCh
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTT 37 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~ 37 (490)
.+|.|||.|.+|.-+|..|++.|++|+++++.+
T Consensus 31 k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~ 63 (123)
T d1nhpa2 31 NNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILD 63 (123)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred CEEEEECChHHHHHHHHHhhccceEEEEEEecC
Confidence 589999999999999999999999999998764
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=92.53 E-value=0.074 Score=43.49 Aligned_cols=35 Identities=11% Similarity=0.182 Sum_probs=31.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChH
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTA 38 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~ 38 (490)
..+|.|||.|.+|.-+|..|.+.|++|+++++.+.
T Consensus 35 ~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~ 69 (133)
T d1q1ra2 35 DNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAAR 69 (133)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CCEEEEECCchHHHHHHHHHHhhCcceeeeeeccc
Confidence 36899999999999999999999999999988643
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=92.53 E-value=0.046 Score=49.71 Aligned_cols=36 Identities=22% Similarity=0.326 Sum_probs=32.4
Q ss_pred CCCcEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChH
Q psy9637 3 AKGDIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTA 38 (490)
Q Consensus 3 ~~~~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~ 38 (490)
.++||.|+|. |.+|..++..|.++||+|++.+|++.
T Consensus 2 ~kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~ 38 (307)
T d1qyca_ 2 SRSRILLIGATGYIGRHVAKASLDLGHPTFLLVREST 38 (307)
T ss_dssp CCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCc
Confidence 3579999995 99999999999999999999999754
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=92.50 E-value=0.16 Score=43.04 Aligned_cols=79 Identities=10% Similarity=0.153 Sum_probs=52.9
Q ss_pred CcEEEEcccHHHHHHHHHHHHCC-CeEEEEeCChHHHHHHHHcccCCCCeecc---CCHHHHHhhC--CCCcEEEEecCC
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHG-FTVVAYNRTTAKVDSFLANEAKGTNIIGA---HSLEELVKNL--KKPRRVMMLVKA 78 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G-~~V~v~dr~~~~~~~l~~~g~~~~~i~~~---~s~~e~v~~l--~~~dvIil~vp~ 78 (490)
.+|.|+|+|-+|...+..++..| ..|++.|+++++.+...+.++.. .+... +...+..... ...|+||-++..
T Consensus 30 dtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga~~-~i~~~~~~~~~~~~~~~~~~~G~D~vid~~G~ 108 (176)
T d2jhfa2 30 STCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATE-CVNPQDYKKPIQEVLTEMSNGGVDFSFEVIGR 108 (176)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSE-EECGGGCSSCHHHHHHHHTTSCBSEEEECSCC
T ss_pred CEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCCee-EEecCCchhHHHHHHHHHhcCCCCEEEecCCc
Confidence 46999999999999999999988 48889999999998887776531 11111 1223332221 246888877766
Q ss_pred CchHHH
Q psy9637 79 GSAVDD 84 (490)
Q Consensus 79 ~~~v~~ 84 (490)
....+.
T Consensus 109 ~~~~~~ 114 (176)
T d2jhfa2 109 LDTMVT 114 (176)
T ss_dssp HHHHHH
T ss_pred hhHHHH
Confidence 433333
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.48 E-value=0.063 Score=43.25 Aligned_cols=32 Identities=16% Similarity=0.213 Sum_probs=30.3
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCC
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRT 36 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~ 36 (490)
.+|.|||.|.+|.-+|.-|.+.|.+|+++.++
T Consensus 21 ~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~ 52 (122)
T d1h6va2 21 GKTLVVGASYVALECAGFLAGIGLDVTVMVRS 52 (122)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CeEEEECCCccHHHHHHHHhhcCCeEEEEEec
Confidence 57999999999999999999999999999876
|
| >d1ks9a1 a.100.1.7 (A:168-291) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Ketopantoate reductase PanE domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=92.44 E-value=0.46 Score=37.87 Aligned_cols=30 Identities=13% Similarity=0.141 Sum_probs=26.0
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHHHh
Q psy9637 268 WRAVVSQSALLGIPTPAFATALAFYDGYRS 297 (490)
Q Consensus 268 l~~~~~~A~~~gv~~P~~~aa~~~~~~~~~ 297 (490)
.+.+++.|+++|+++|..+..++..+...+
T Consensus 94 ~G~vv~~a~~~gi~tP~~~~l~~lik~~E~ 123 (124)
T d1ks9a1 94 NGFLLRRARAHGIAVPENTRLFEMVKRKES 123 (124)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCcHHHHHHHHHHHHhc
Confidence 456899999999999999999998876654
|
| >d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Bacterial sepiapterin reductase species: Chlorobium tepidum [TaxId: 1097]
Probab=92.42 E-value=0.18 Score=45.35 Aligned_cols=81 Identities=16% Similarity=0.203 Sum_probs=54.2
Q ss_pred cEEEE-cc-cHHHHHHHHHHHHCCCe-------EEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEe-
Q psy9637 6 DIGLI-GL-AVMGQNLILNMNDHGFT-------VVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMML- 75 (490)
Q Consensus 6 ~IgiI-Gl-G~MG~~lA~~L~~~G~~-------V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~- 75 (490)
+|.+| |. +-+|..+|+.|+++|++ |.+++|++++++++.++-. +. ..++..+.
T Consensus 2 ~VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~---------------~~--g~~~~~~~~ 64 (240)
T d2bd0a1 2 HILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECR---------------AE--GALTDTITA 64 (240)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHH---------------TT--TCEEEEEEC
T ss_pred CEEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHH---------------hc--CCcEEEEEe
Confidence 56555 54 67999999999999987 8999999998887654311 10 12333322
Q ss_pred -cCCCchHHHHHHhhcccCCCCCEEEcCC
Q psy9637 76 -VKAGSAVDDFIDKLVPLLEKGDIIIDGG 103 (490)
Q Consensus 76 -vp~~~~v~~vl~~l~~~l~~g~iiId~s 103 (490)
+.+.+.++++++.+.....+=|++|+..
T Consensus 65 Dvt~~~~v~~~~~~~~~~~g~iDilvnnA 93 (240)
T d2bd0a1 65 DISDMADVRRLTTHIVERYGHIDCLVNNA 93 (240)
T ss_dssp CTTSHHHHHHHHHHHHHHTSCCSEEEECC
T ss_pred cCCCHHHHHHHHHHHHHHcCCcceeeccc
Confidence 3444567777777766665667887654
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.40 E-value=0.065 Score=43.30 Aligned_cols=33 Identities=12% Similarity=0.140 Sum_probs=30.9
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCCh
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTT 37 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~ 37 (490)
++|.|||.|..|.-+|..|.+.|.+|+++.|++
T Consensus 23 k~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~ 55 (125)
T d3grsa2 23 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHD 55 (125)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CEEEEEcCCccHHHHHHHHhcCCcEEEEEeecc
Confidence 579999999999999999999999999999863
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.36 E-value=0.1 Score=44.58 Aligned_cols=44 Identities=9% Similarity=-0.006 Sum_probs=36.6
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHccc
Q psy9637 5 GDIGLIG-LAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEA 48 (490)
Q Consensus 5 ~~IgiIG-lG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~ 48 (490)
.+|.|.| .|.+|...+..+...|.+|++..+++++.+.+.+.|.
T Consensus 27 ~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~~~Ga 71 (183)
T d1pqwa_ 27 ERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRLGV 71 (183)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTTCC
T ss_pred CEEEEECCCCCcccccchhhccccccceeeecccccccccccccc
Confidence 4688878 4999999888888889999999999998887776554
|
| >d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.12 E-value=0.067 Score=48.27 Aligned_cols=40 Identities=13% Similarity=0.155 Sum_probs=33.9
Q ss_pred cEEEE--cccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q psy9637 6 DIGLI--GLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLA 45 (490)
Q Consensus 6 ~IgiI--GlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~ 45 (490)
|+++| |.+-+|..+|+.|+++|++|++.+|+.++.+...+
T Consensus 6 KvalITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~ 47 (248)
T d2o23a1 6 LVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAK 47 (248)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHH
Confidence 67766 56779999999999999999999999887776554
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=92.12 E-value=0.22 Score=45.06 Aligned_cols=77 Identities=12% Similarity=0.116 Sum_probs=48.6
Q ss_pred cEEEE-c-ccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHH
Q psy9637 6 DIGLI-G-LAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVD 83 (490)
Q Consensus 6 ~IgiI-G-lG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~ 83 (490)
|+.+| | .+-+|..+|+.|+++|++|++.||++++.+...+.+ ...+-+=|.+...++
T Consensus 6 K~alITGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~---------------------~~~~~~Dv~~~~~v~ 64 (248)
T d2d1ya1 6 KGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEGKEVAEAIG---------------------GAFFQVDLEDERERV 64 (248)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTHHHHHHHHT---------------------CEEEECCTTCHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcC---------------------CeEEEEeCCCHHHHH
Confidence 44455 4 688999999999999999999999977644322111 112211233444566
Q ss_pred HHHHhhcccCCCCCEEEcCC
Q psy9637 84 DFIDKLVPLLEKGDIIIDGG 103 (490)
Q Consensus 84 ~vl~~l~~~l~~g~iiId~s 103 (490)
++++++.....+=|++|+..
T Consensus 65 ~~~~~~~~~~G~iDiLVnnA 84 (248)
T d2d1ya1 65 RFVEEAAYALGRVDVLVNNA 84 (248)
T ss_dssp HHHHHHHHHHSCCCEEEECC
T ss_pred HHHHHHHHhcCCCCeEEEeC
Confidence 66666665554556777643
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=92.09 E-value=0.1 Score=47.69 Aligned_cols=116 Identities=13% Similarity=0.052 Sum_probs=75.1
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccC---CCCeeccCCHHHHHhhCCCCcEEEEecCCCch
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAK---GTNIIGAHSLEELVKNLKKPRRVMMLVKAGSA 81 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~---~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~ 81 (490)
++|-=+|+|. | .++..+++.|.+|+++|.++..++...+.... ..++ ...+..+.... ...|+|+..+.. ..
T Consensus 122 ~~VLDiGcGs-G-~l~i~aa~~g~~V~gvDis~~av~~A~~na~~n~~~~~~-~~~d~~~~~~~-~~fD~V~ani~~-~~ 196 (254)
T d2nxca1 122 DKVLDLGTGS-G-VLAIAAEKLGGKALGVDIDPMVLPQAEANAKRNGVRPRF-LEGSLEAALPF-GPFDLLVANLYA-EL 196 (254)
T ss_dssp CEEEEETCTT-S-HHHHHHHHTTCEEEEEESCGGGHHHHHHHHHHTTCCCEE-EESCHHHHGGG-CCEEEEEEECCH-HH
T ss_pred CEEEEcccch-h-HHHHHHHhcCCEEEEEECChHHHHHHHHHHHHcCCceeE-Eeccccccccc-cccchhhhcccc-cc
Confidence 5788899986 4 35667788899999999999988776542111 1122 34555554432 347888876554 36
Q ss_pred HHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccccccc
Q psy9637 82 VDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYVG 126 (490)
Q Consensus 82 v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~ld 126 (490)
..+++..+...|+||-.+|-.+ ....+.....+.+.+.|...++
T Consensus 197 l~~l~~~~~~~LkpGG~lilSg-il~~~~~~v~~~~~~~Gf~~~~ 240 (254)
T d2nxca1 197 HAALAPRYREALVPGGRALLTG-ILKDRAPLVREAMAGAGFRPLE 240 (254)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEE-EEGGGHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHhcCCCcEEEEEe-cchhhHHHHHHHHHHCCCEEEE
Confidence 6777778888888887665432 2234445555677777876554
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=91.95 E-value=0.072 Score=47.58 Aligned_cols=35 Identities=17% Similarity=0.288 Sum_probs=32.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChH
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTA 38 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~ 38 (490)
..+|.|||.|.-|...|..|++.|++|++++++++
T Consensus 49 ~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~ 83 (233)
T d1djqa3 49 KDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEK 83 (233)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CceEEEEcccHHHHHHHHHHHHhccceeeEeeccc
Confidence 36899999999999999999999999999998764
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=91.84 E-value=0.35 Score=43.79 Aligned_cols=82 Identities=15% Similarity=0.253 Sum_probs=50.6
Q ss_pred cEEEE--cccHHHHHHHHHHHHCCCeEEEEeCC-hHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEe--cCCCc
Q psy9637 6 DIGLI--GLAVMGQNLILNMNDHGFTVVAYNRT-TAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMML--VKAGS 80 (490)
Q Consensus 6 ~IgiI--GlG~MG~~lA~~L~~~G~~V~v~dr~-~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~--vp~~~ 80 (490)
|+.+| |.+-+|..+|+.|+++|++|++.+|+ ++..+++.+.- .+.- . .+++.+. +.+.+
T Consensus 5 K~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~------------~~~~-g---~~~~~~~~Dv~~~~ 68 (260)
T d1x1ta1 5 KVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGL------------AAQH-G---VKVLYDGADLSKGE 68 (260)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHH------------HHHH-T---SCEEEECCCTTSHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHH------------HHhc-C---CcEEEEECCCCCHH
Confidence 56666 56779999999999999999999997 45555543211 0100 1 2344333 23334
Q ss_pred hHHHHHHhhcccCCCCCEEEcCC
Q psy9637 81 AVDDFIDKLVPLLEKGDIIIDGG 103 (490)
Q Consensus 81 ~v~~vl~~l~~~l~~g~iiId~s 103 (490)
.++++++.+.....+=|++|+..
T Consensus 69 ~v~~~~~~~~~~~G~iDiLVnnA 91 (260)
T d1x1ta1 69 AVRGLVDNAVRQMGRIDILVNNA 91 (260)
T ss_dssp HHHHHHHHHHHHHSCCSEEEECC
T ss_pred HHHHHHHHHHHHhCCCcEEEeec
Confidence 56666666665554556777654
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=91.82 E-value=0.088 Score=42.10 Aligned_cols=33 Identities=27% Similarity=0.396 Sum_probs=30.5
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCCh
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTT 37 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~ 37 (490)
.+|.|||.|.+|.-+|..|++.|.+|+++.+++
T Consensus 23 ~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~ 55 (119)
T d3lada2 23 GKLGVIGAGVIGLELGSVWARLGAEVTVLEAMD 55 (119)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred CeEEEECCChHHHHHHHHHHHcCCceEEEEeec
Confidence 579999999999999999999999999997654
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Probab=91.80 E-value=0.27 Score=44.29 Aligned_cols=79 Identities=16% Similarity=0.320 Sum_probs=49.6
Q ss_pred cEEEE-c-ccHHHHHHHHHHHHCCCeEEEEeCChHH-HHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEe--cCCCc
Q psy9637 6 DIGLI-G-LAVMGQNLILNMNDHGFTVVAYNRTTAK-VDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMML--VKAGS 80 (490)
Q Consensus 6 ~IgiI-G-lG~MG~~lA~~L~~~G~~V~v~dr~~~~-~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~--vp~~~ 80 (490)
|+.+| | .+-+|..+|+.|+++|++|++.||+++. .+...+. + ..+++.+. +.+..
T Consensus 6 KvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~-------------------~-g~~~~~~~~Dvs~~~ 65 (247)
T d2ew8a1 6 KLAVITGGANGIGRAIAERFAVEGADIAIADLVPAPEAEAAIRN-------------------L-GRRVLTVKCDVSQPG 65 (247)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHH-------------------T-TCCEEEEECCTTCHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHHH-------------------c-CCcEEEEEeeCCCHH
Confidence 56666 4 5779999999999999999999998643 2221111 1 02233322 34445
Q ss_pred hHHHHHHhhcccCCCCCEEEcCCC
Q psy9637 81 AVDDFIDKLVPLLEKGDIIIDGGN 104 (490)
Q Consensus 81 ~v~~vl~~l~~~l~~g~iiId~s~ 104 (490)
.++.+++.+.....+=|++|+...
T Consensus 66 ~v~~~~~~~~~~~G~iDilVnnAG 89 (247)
T d2ew8a1 66 DVEAFGKQVISTFGRCDILVNNAG 89 (247)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHHHHcCCCCEEEECCC
Confidence 666777766665555577776543
|
| >d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Sarcosine oxidase species: Bacillus sp., strain b0618 [TaxId: 1409]
Probab=91.79 E-value=0.062 Score=48.93 Aligned_cols=31 Identities=16% Similarity=0.298 Sum_probs=29.5
Q ss_pred cEEEEcccHHHHHHHHHHHHCCCeEEEEeCC
Q psy9637 6 DIGLIGLAVMGQNLILNMNDHGFTVVAYNRT 36 (490)
Q Consensus 6 ~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~ 36 (490)
.|.|||.|.+|...|..|+++|++|+++|+.
T Consensus 5 DvvIIGaGi~Gls~A~~La~~G~~V~viE~~ 35 (281)
T d2gf3a1 5 DVIVVGAGSMGMAAGYQLAKQGVKTLLVDAF 35 (281)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEeCC
Confidence 5899999999999999999999999999975
|
| >d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=91.73 E-value=0.058 Score=50.54 Aligned_cols=34 Identities=15% Similarity=0.243 Sum_probs=31.6
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTA 38 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~ 38 (490)
.+|.|||+|.-|..+|..|.++|++|++++++++
T Consensus 8 ~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~ 41 (298)
T d1w4xa1 8 VDVLVVGAGFSGLYALYRLRELGRSVHVIETAGD 41 (298)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred CCEEEECccHHHHHHHHHHHhCCCCEEEEEcCCC
Confidence 4699999999999999999999999999999865
|
| >d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=91.72 E-value=0.032 Score=47.15 Aligned_cols=91 Identities=9% Similarity=0.181 Sum_probs=51.1
Q ss_pred cEEEEcc-cHHHHHHHHHHHHCCCe---EEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCch
Q psy9637 6 DIGLIGL-AVMGQNLILNMNDHGFT---VVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSA 81 (490)
Q Consensus 6 ~IgiIGl-G~MG~~lA~~L~~~G~~---V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~ 81 (490)
||||||. |..|.-|.+.|.++.++ +..+..+...-+.+ ... ..........++.. .+.|++++++|.+ .
T Consensus 3 kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~~s~G~~~-~~~--~~~~~~~~~~~~~~---~~~d~~f~~~~~~-~ 75 (154)
T d2gz1a1 3 TVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSL-KFK--DQDITIEETTETAF---EGVDIALFSAGSS-T 75 (154)
T ss_dssp EEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECGGGTTCEE-EET--TEEEEEEECCTTTT---TTCSEEEECSCHH-H
T ss_pred EEEEECCCcHHHHHHHHHHHcCCCCceEEEEecccccccccc-ccc--CCcccccccchhhh---hhhhhhhhccCcc-c
Confidence 7999997 99999999999888653 32333221110000 000 00111111122222 2379999999885 3
Q ss_pred HHHHHHhhcccCCCCCEEEcCCCCC
Q psy9637 82 VDDFIDKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 82 v~~vl~~l~~~l~~g~iiId~s~~~ 106 (490)
....... ...+|..|||.|.-+
T Consensus 76 s~~~~~~---~~~~~~~VIDlSsdf 97 (154)
T d2gz1a1 76 SAKYAPY---AVKAGVVVVDNTSYF 97 (154)
T ss_dssp HHHHHHH---HHHTTCEEEECSSTT
T ss_pred hhhHHhh---hccccceehhcChhh
Confidence 3333333 334789999999865
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=91.66 E-value=0.09 Score=47.96 Aligned_cols=82 Identities=15% Similarity=0.101 Sum_probs=51.6
Q ss_pred cEEEE-c-ccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEe--cCCCch
Q psy9637 6 DIGLI-G-LAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMML--VKAGSA 81 (490)
Q Consensus 6 ~IgiI-G-lG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~--vp~~~~ 81 (490)
|+.+| | .+-+|..+|+.|+++|++|++.+|+.++.++..++- .+.. ..+++.+. +.+.+.
T Consensus 10 K~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~---------------~~~~-g~~~~~~~~Dv~~~~~ 73 (260)
T d1h5qa_ 10 KTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKV---------------GKEF-GVKTKAYQCDVSNTDI 73 (260)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHH---------------HHHH-TCCEEEEECCTTCHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH---------------HHHh-CCceEEEEccCCCHHH
Confidence 55555 5 567999999999999999999999988766554321 1110 02333333 234445
Q ss_pred HHHHHHhhcccCCCCCEEEcCC
Q psy9637 82 VDDFIDKLVPLLEKGDIIIDGG 103 (490)
Q Consensus 82 v~~vl~~l~~~l~~g~iiId~s 103 (490)
++.+++.+.....+=|++|+..
T Consensus 74 v~~~~~~~~~~~g~iDilVnnA 95 (260)
T d1h5qa_ 74 VTKTIQQIDADLGPISGLIANA 95 (260)
T ss_dssp HHHHHHHHHHHSCSEEEEEECC
T ss_pred HHHHHHHHHHHhCCCcEecccc
Confidence 6666666665554556666653
|
| >d1i36a1 a.100.1.8 (A:153-264) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Conserved hypothetical protein MTH1747 domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=91.47 E-value=0.35 Score=38.22 Aligned_cols=103 Identities=10% Similarity=-0.017 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhcccchhhHhHhHhHHhhccCcccccccCChhH
Q psy9637 178 KKEFLENIRQALYASKIVSYAQGFMLMRQAAEIHGWKLNYGGIALMWRGGCIIRSVFLGNIKAAFDKNPALSNLLLDPFF 257 (490)
Q Consensus 178 ~a~~~Kll~n~l~~~~~~~~aE~~~la~~a~~~~~~Gld~~~v~~i~~~g~~~~s~~l~~i~~~~~~~~~~~~~~~~~~f 257 (490)
.|..+|+++..+..+..+.+.|++..++++ |+....+. .|..+-. ..+.+.+. ... +..
T Consensus 2 ~ASalKM~rS~~~KG~~AL~~e~~~aA~~~------Gv~~~l~~-~l~~s~~--~~~~~~~~-----------~~v-~~~ 60 (112)
T d1i36a1 2 DASAIKMLRSSYTKGVSALLWETLTAAHRL------GLEEDVLE-MLEYTEG--NDFRESAI-----------SRL-KSS 60 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------TCHHHHHH-HHHTTSC--SSTHHHHH-----------HHH-HHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCHHHHHH-HHHHcCC--ccHHHHHH-----------HHh-cCC
Confidence 578999999999999999999999999999 88765333 3322110 00001000 000 111
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhCCChh
Q psy9637 258 KDAIHATQSSWRAVVSQSALLGIPTPAFATALAFYDGYRSKRLPA 302 (490)
Q Consensus 258 ~~~l~~~~kDl~~~~~~A~~~gv~~P~~~aa~~~~~~~~~~g~~~ 302 (490)
...-......++.+.++.++. ++.-+..++.+.|+.....+++.
T Consensus 61 ~~ha~Rr~~EM~Eia~tl~~~-l~P~m~~a~a~~~~~~~d~~~~~ 104 (112)
T d1i36a1 61 CIHARRRYEEMKEVQDMLAEV-IDPVMPTCIIRIFDKLKDVKVSA 104 (112)
T ss_dssp HHTHHHHHHHHHHHHHHHHTT-SCCSHHHHHHHHHHHHCC-----
T ss_pred cchhhHHHHHHHHHHHHHHHh-CCchHHHHHHHHHHHHHhcCCCh
Confidence 111223456677777887774 77778888888888876655543
|
| >d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=91.37 E-value=0.3 Score=43.91 Aligned_cols=81 Identities=11% Similarity=0.251 Sum_probs=51.5
Q ss_pred cEEEE--cccHHHHHHHHHHHHCCCeEEEE-eCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEe--cCCCc
Q psy9637 6 DIGLI--GLAVMGQNLILNMNDHGFTVVAY-NRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMML--VKAGS 80 (490)
Q Consensus 6 ~IgiI--GlG~MG~~lA~~L~~~G~~V~v~-dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~--vp~~~ 80 (490)
+|.+| |.+-+|..+|+.|+++|++|++. .|+++..+++.+.- ++. . .+++.+. +.+.+
T Consensus 2 pV~lITGas~GIG~a~a~~la~~Ga~V~i~~~~~~~~~~~~~~~~------------~~~--g---~~~~~~~~Dv~~~~ 64 (244)
T d1edoa_ 2 PVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQI------------EAY--G---GQAITFGGDVSKEA 64 (244)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHH------------HHH--T---CEEEEEECCTTSHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHH------------HHc--C---CcEEEEeCCCCCHH
Confidence 36666 56889999999999999999885 56777766654321 111 1 2333332 23334
Q ss_pred hHHHHHHhhcccCCCCCEEEcCC
Q psy9637 81 AVDDFIDKLVPLLEKGDIIIDGG 103 (490)
Q Consensus 81 ~v~~vl~~l~~~l~~g~iiId~s 103 (490)
.++++++.+.....+=|++|+..
T Consensus 65 ~v~~~~~~~~~~~g~iDiLVnnA 87 (244)
T d1edoa_ 65 DVEAMMKTAIDAWGTIDVVVNNA 87 (244)
T ss_dssp HHHHHHHHHHHHSSCCSEEEECC
T ss_pred HHHHHHHHHHHHcCCCCcccccc
Confidence 56667777666555557777654
|
| >d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monoamine oxidase B species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.26 E-value=0.08 Score=48.94 Aligned_cols=32 Identities=22% Similarity=0.383 Sum_probs=29.8
Q ss_pred cEEEEcccHHHHHHHHHHHHCCCeEEEEeCCh
Q psy9637 6 DIGLIGLAVMGQNLILNMNDHGFTVVAYNRTT 37 (490)
Q Consensus 6 ~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~ 37 (490)
.|.|||.|.-|..-|..|+++|++|++++++.
T Consensus 1 DViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~ 32 (383)
T d2v5za1 1 DVVVVGGGISGMAAAKLLHDSGLNVVVLEARD 32 (383)
T ss_dssp SEEEECCBHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence 48899999999999999999999999999864
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Probab=91.25 E-value=0.29 Score=44.10 Aligned_cols=84 Identities=11% Similarity=0.081 Sum_probs=49.8
Q ss_pred cEEEEcc-c--HHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchH
Q psy9637 6 DIGLIGL-A--VMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAV 82 (490)
Q Consensus 6 ~IgiIGl-G--~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v 82 (490)
++-|.|. | -+|..+|+.|+++|++|++.+|+++..+...+ ..........+-.=+.+.+.+
T Consensus 10 ~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~----------------~~~~~~~~~~~~~D~~~~~~v 73 (256)
T d1ulua_ 10 KALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEK----------------LAEALGGALLFRADVTQDEEL 73 (256)
T ss_dssp EEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH----------------HHHHTTCCEEEECCTTCHHHH
T ss_pred EEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHH----------------hhhccCcccccccccCCHHHH
Confidence 4555575 3 49999999999999999999998654333221 111111122222223444556
Q ss_pred HHHHHhhcccCCCCCEEEcCCCC
Q psy9637 83 DDFIDKLVPLLEKGDIIIDGGNS 105 (490)
Q Consensus 83 ~~vl~~l~~~l~~g~iiId~s~~ 105 (490)
+.+++.+.....+=|++|+....
T Consensus 74 ~~~~~~~~~~~g~iDilVnnag~ 96 (256)
T d1ulua_ 74 DALFAGVKEAFGGLDYLVHAIAF 96 (256)
T ss_dssp HHHHHHHHHHHSSEEEEEECCCC
T ss_pred HHHHHHHHHhcCCceEEEecccc
Confidence 66666666555445677766543
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=91.20 E-value=0.084 Score=41.85 Aligned_cols=33 Identities=15% Similarity=0.206 Sum_probs=30.7
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCCh
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTT 37 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~ 37 (490)
.++.|||.|..|.-+|..|++.|++|+++++.+
T Consensus 22 ~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~ 54 (115)
T d1lvla2 22 QHLVVVGGGYIGLELGIAYRKLGAQVSVVEARE 54 (115)
T ss_dssp SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred CeEEEECCCHHHHHHHHHHhhcccceEEEeeec
Confidence 579999999999999999999999999998764
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=91.19 E-value=0.16 Score=46.45 Aligned_cols=81 Identities=17% Similarity=0.308 Sum_probs=50.2
Q ss_pred cEEEE--cccHHHHHHHHHHHHCCCeEEEEeCChH-HHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEe--cCCCc
Q psy9637 6 DIGLI--GLAVMGQNLILNMNDHGFTVVAYNRTTA-KVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMML--VKAGS 80 (490)
Q Consensus 6 ~IgiI--GlG~MG~~lA~~L~~~G~~V~v~dr~~~-~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~--vp~~~ 80 (490)
|+.|| |.+-+|..+|+.|+++|++|++.+|+.+ ..+.+.+. ++.. ..+++.+. +.+..
T Consensus 8 K~alITGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~----------------~~~~-g~~~~~~~~Dvt~~~ 70 (261)
T d1geea_ 8 KVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEE----------------IKKV-GGEAIAVKGDVTVES 70 (261)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHH----------------HHHT-TCEEEEEECCTTSHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHH----------------HHhc-CCcEEEEEccCCCHH
Confidence 56666 4688999999999999999999999854 34443321 1110 12333332 23334
Q ss_pred hHHHHHHhhcccCCCCCEEEcCC
Q psy9637 81 AVDDFIDKLVPLLEKGDIIIDGG 103 (490)
Q Consensus 81 ~v~~vl~~l~~~l~~g~iiId~s 103 (490)
.++++++.+.....+=|++|+..
T Consensus 71 ~v~~~~~~~~~~~G~iDiLVnnA 93 (261)
T d1geea_ 71 DVINLVQSAIKEFGKLDVMINNA 93 (261)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECC
T ss_pred HHHHHHHHHHHHhCCCCEeeccc
Confidence 56666666665554557777654
|
| >d1ebfa1 c.2.1.3 (A:2-150,A:341-359) Homoserine dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Homoserine dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.12 E-value=0.12 Score=44.06 Aligned_cols=24 Identities=17% Similarity=0.315 Sum_probs=21.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCC
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHG 27 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G 27 (490)
+.+|+++|+|.+|..+++.|.++.
T Consensus 4 ~i~I~l~G~G~VG~~l~~~l~~~~ 27 (168)
T d1ebfa1 4 VVNVAVIGAGVVGSAFLDQLLAMK 27 (168)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHCC
T ss_pred EEEEEEEeCCHHHHHHHHHHHHhH
Confidence 357999999999999999998754
|
| >d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=91.08 E-value=0.05 Score=48.12 Aligned_cols=34 Identities=9% Similarity=-0.072 Sum_probs=30.6
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-------eEEEEeCChH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGF-------TVVAYNRTTA 38 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~-------~V~v~dr~~~ 38 (490)
.||+|||.|.-|...|..|+++|| +|++|++.+.
T Consensus 3 ~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~ 43 (239)
T d1lqta2 3 YYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPT 43 (239)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSS
T ss_pred cEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCC
Confidence 489999999999999999999984 7999998754
|
| >d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Flavoprotein BC4706 species: Bacillus cereus [TaxId: 1396]
Probab=91.05 E-value=0.1 Score=46.50 Aligned_cols=35 Identities=17% Similarity=0.205 Sum_probs=32.0
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAK 39 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~ 39 (490)
-+|.|||.|..|...|..|+++|++|.++++++.-
T Consensus 3 yDViIIGaG~aGl~aA~~la~~G~~V~liEk~~~~ 37 (251)
T d2i0za1 3 YDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKL 37 (251)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence 47999999999999999999999999999987643
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Probab=91.04 E-value=0.053 Score=49.15 Aligned_cols=33 Identities=12% Similarity=0.247 Sum_probs=30.5
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCCh
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTT 37 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~ 37 (490)
|||-|.|. |.+|..++..|.++||+|++.||+.
T Consensus 2 MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~ 35 (281)
T d1vl0a_ 2 MKILITGANGQLGREIQKQLKGKNVEVIPTDVQD 35 (281)
T ss_dssp EEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTT
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEeechh
Confidence 68999996 9999999999999999999999863
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=90.70 E-value=0.5 Score=42.91 Aligned_cols=39 Identities=10% Similarity=0.345 Sum_probs=30.4
Q ss_pred cEEEE--cccHHHHHHHHHHHHCCCeEEEEeCCh-HHHHHHH
Q psy9637 6 DIGLI--GLAVMGQNLILNMNDHGFTVVAYNRTT-AKVDSFL 44 (490)
Q Consensus 6 ~IgiI--GlG~MG~~lA~~L~~~G~~V~v~dr~~-~~~~~l~ 44 (490)
|+.+| |.+-+|..+|+.|+++|++|++.+++. +.++.+.
T Consensus 19 K~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~ 60 (272)
T d1g0oa_ 19 KVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVV 60 (272)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchHHHHHHH
Confidence 56666 478999999999999999999988764 4444443
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.42 E-value=0.21 Score=45.57 Aligned_cols=40 Identities=15% Similarity=0.329 Sum_probs=33.7
Q ss_pred cEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q psy9637 6 DIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLA 45 (490)
Q Consensus 6 ~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~ 45 (490)
++-|.|. +-+|..+|+.|+++|++|++.+|+.++++++.+
T Consensus 16 ~alITGassGIG~aiA~~la~~G~~Vil~~r~~~~l~~~~~ 56 (269)
T d1xu9a_ 16 KVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVS 56 (269)
T ss_dssp EEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 4555565 569999999999999999999999998887654
|
| >d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha-hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=90.32 E-value=0.11 Score=46.63 Aligned_cols=34 Identities=21% Similarity=0.227 Sum_probs=28.7
Q ss_pred CcEEEE-c-ccHHHHHHHHHHHHCCCeEEEEeCChH
Q psy9637 5 GDIGLI-G-LAVMGQNLILNMNDHGFTVVAYNRTTA 38 (490)
Q Consensus 5 ~~IgiI-G-lG~MG~~lA~~L~~~G~~V~v~dr~~~ 38 (490)
|||.|| | .+-+|.++|+.|+++|++|++.||+.+
T Consensus 1 mkVvlITGas~GIG~aiA~~la~~Ga~V~~~~~~~~ 36 (257)
T d1fjha_ 1 MSIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDA 36 (257)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECChH
Confidence 467666 5 577999999999999999999998753
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=90.19 E-value=0.68 Score=38.74 Aligned_cols=44 Identities=16% Similarity=0.285 Sum_probs=37.9
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHccc
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGF-TVVAYNRTTAKVDSFLANEA 48 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~g~ 48 (490)
.+|.|+|.|-+|...+..++..|- .|++.|+++++.+...+.|+
T Consensus 30 ~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~GA 74 (175)
T d1cdoa2 30 STCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGA 74 (175)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTC
T ss_pred CEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHcCC
Confidence 469999999999998888888775 68899999999988887765
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=90.15 E-value=0.15 Score=40.44 Aligned_cols=34 Identities=18% Similarity=0.128 Sum_probs=31.4
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTA 38 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~ 38 (490)
++|.|||.|.+|.-+|..|++.|.+|+++.+.+.
T Consensus 23 ~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~ 56 (121)
T d1mo9a2 23 STVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEP 56 (121)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCT
T ss_pred CEEEEECCCHHHHHHHHHHHhcchhheEeeccch
Confidence 5899999999999999999999999999988653
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=90.02 E-value=0.1 Score=41.96 Aligned_cols=34 Identities=15% Similarity=0.146 Sum_probs=31.2
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTA 38 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~ 38 (490)
.++.|||.|.+|.-+|..|.+.|.+|++..|++.
T Consensus 26 ~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~ 59 (123)
T d1dxla2 26 KKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASE 59 (123)
T ss_dssp SEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred CeEEEEccchHHHHHHHHHHhcCCeEEEEEEccc
Confidence 5799999999999999999999999999988653
|
| >d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: TAT-interacting protein TIP30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.66 E-value=0.048 Score=48.75 Aligned_cols=73 Identities=11% Similarity=0.210 Sum_probs=46.6
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCC--eEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCC
Q psy9637 5 GDIGLIG-LAVMGQNLILNMNDHGF--TVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKA 78 (490)
Q Consensus 5 ~~IgiIG-lG~MG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~ 78 (490)
++|-|.| .|.+|..++..|.++|. +|++++|++.....-...... ..+.-..+++++...++.+|+++.++..
T Consensus 15 k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~~~~~~i~-~~~~D~~~~~~~~~~~~~~d~vi~~~~~ 90 (232)
T d2bkaa1 15 KSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVN-QEVVDFEKLDDYASAFQGHDVGFCCLGT 90 (232)
T ss_dssp CEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGGCE-EEECCGGGGGGGGGGGSSCSEEEECCCC
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhcccccceee-eeeecccccccccccccccccccccccc
Confidence 5799997 69999999999999994 899999976432211111000 0000123445555566678888877654
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Probab=89.63 E-value=0.43 Score=42.71 Aligned_cols=38 Identities=13% Similarity=0.132 Sum_probs=29.1
Q ss_pred CcEEEEccc---HHHHHHHHHHHHCCCeEEEEeCChHHHHH
Q psy9637 5 GDIGLIGLA---VMGQNLILNMNDHGFTVVAYNRTTAKVDS 42 (490)
Q Consensus 5 ~~IgiIGlG---~MG~~lA~~L~~~G~~V~v~dr~~~~~~~ 42 (490)
+++-|.|.+ -+|..+|+.|+++|++|++.+|+++..+.
T Consensus 6 K~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~~~~~ 46 (258)
T d1qsga_ 6 KRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGR 46 (258)
T ss_dssp CEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHHH
T ss_pred CEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 345555654 37899999999999999999998654443
|
| >d1e5da1 c.23.5.1 (A:251-402) Rubredoxin oxygen:oxidoreductase (ROO), C-terminal domain {Desulfovibrio gigas [TaxId: 879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavodoxin-related domain: Rubredoxin oxygen:oxidoreductase (ROO), C-terminal domain species: Desulfovibrio gigas [TaxId: 879]
Probab=89.53 E-value=1.2 Score=36.21 Aligned_cols=105 Identities=13% Similarity=0.077 Sum_probs=63.9
Q ss_pred CcEEEE-c-----ccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCC
Q psy9637 5 GDIGLI-G-----LAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKA 78 (490)
Q Consensus 5 ~~IgiI-G-----lG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~ 78 (490)
.||.|| + +-.|...++..|.+.|++|.++|.+.. ++.+....+..+|.|++..|.
T Consensus 3 ~Ki~IiY~S~tGnTe~~A~~Ia~~l~~~g~ev~~~~~~~~-------------------~~~~~~~~l~~~d~vi~Gspt 63 (152)
T d1e5da1 3 NKVVIFYDSMWHSTEKMARVLAESFRDEGCTVKLMWCKAC-------------------HHSQIMSEISDAGAVIVGSPT 63 (152)
T ss_dssp SEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEETTTS-------------------CHHHHHHHHHTCSEEEEECCC
T ss_pred CeEEEEEECCCcHHHHHHHHHHHHHhhCCCEEEEeecccC-------------------ChhhhccchhhCCEEEEeccc
Confidence 466666 2 235777788888899999999986532 222223233338999999988
Q ss_pred C-----chHHHHHHhhcccCCCCCEEEcCCC--CChHHHHHHHHHHHHccccccccC
Q psy9637 79 G-----SAVDDFIDKLVPLLEKGDIIIDGGN--SEYQDTDRRSKALEAKGLLYVGCG 128 (490)
Q Consensus 79 ~-----~~v~~vl~~l~~~l~~g~iiId~s~--~~~~~~~~~~~~l~~~gi~~ld~~ 128 (490)
. ..+...++.+...-.++..+.-.++ ........+.+.+.+.|...+.-|
T Consensus 64 ~~~~~~~~~~~~l~~~~~~~~~~k~~~~fgs~g~~~~a~~~~~~~l~~~g~~~v~~~ 120 (152)
T d1e5da1 64 HNNGILPYVAGTLQYIKGLRPQNKIGGAFGSFGWSGESTKVLAEWLTGMGFDMPATP 120 (152)
T ss_dssp BTTBCCHHHHHHHHHHHHTCCCSCEEEEEEEESSSCHHHHHHHHHHHHTTCBCCSCC
T ss_pred cCCccCchhHHHHHHhhccCCCCCEEEEEEeeCCCCccHHHHHHHHHHCCCEEecCc
Confidence 4 2456666655443335555433333 123344555577888888776544
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=89.44 E-value=0.6 Score=41.52 Aligned_cols=122 Identities=12% Similarity=0.041 Sum_probs=72.9
Q ss_pred CcEEEEcccH--HHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeec----cCCHHHHHhhCCCCcEEEEecCC
Q psy9637 5 GDIGLIGLAV--MGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIG----AHSLEELVKNLKKPRRVMMLVKA 78 (490)
Q Consensus 5 ~~IgiIGlG~--MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~----~~s~~e~v~~l~~~dvIil~vp~ 78 (490)
++|.=+|+|. .-..+|...-. .-.|+++|.++..++.+.+......++.. ...+.......+..|+|+..++.
T Consensus 75 ~~VLDlGaGsG~~t~~la~~VG~-~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~~~~~~~~~~~~vD~i~~d~~~ 153 (227)
T d1g8aa_ 75 KSVLYLGIASGTTASHVSDIVGW-EGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFEDVAQ 153 (227)
T ss_dssp CEEEEETTTSTTHHHHHHHHHCT-TSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEECCCS
T ss_pred CEEEEeccCCCHHHHHHHHHhCC-CCEEEEEeCcHHHHHHHHHHHHhcCCceEEEEECCCcccccccccceEEEEEEccc
Confidence 5788887764 33333332222 34899999999998887664322222211 22333322223346889888887
Q ss_pred CchHHHHHHhhcccCCCCCEEEcC-------CCCChHHHHHHHHHHHHcccccccc
Q psy9637 79 GSAVDDFIDKLVPLLEKGDIIIDG-------GNSEYQDTDRRSKALEAKGLLYVGC 127 (490)
Q Consensus 79 ~~~v~~vl~~l~~~l~~g~iiId~-------s~~~~~~~~~~~~~l~~~gi~~ld~ 127 (490)
..+.+.++..+...|++|-.++-+ ++..++...+..+.+.+.|...++.
T Consensus 154 ~~~~~~~l~~~~~~LkpgG~lvi~~ka~~~~~~~~~~~v~~~v~~l~~~gf~iie~ 209 (227)
T d1g8aa_ 154 PTQAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEPEQVFREVERELSEYFEVIER 209 (227)
T ss_dssp TTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred cchHHHHHHHHHHhcccCCeEEEEEECCccCCCCCHHHHHHHHHHHHHcCCEEEEE
Confidence 777888888888888887765431 2334455555445566667665543
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=89.38 E-value=0.31 Score=40.99 Aligned_cols=45 Identities=16% Similarity=0.193 Sum_probs=36.8
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHcccC
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGF-TVVAYNRTTAKVDSFLANEAK 49 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~g~~ 49 (490)
.+|.|+|.|-+|...+..+...|. .|++.++++++.+...+.|+.
T Consensus 30 ~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa~ 75 (176)
T d2fzwa2 30 SVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGAT 75 (176)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCS
T ss_pred CEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCCc
Confidence 469999999999888888888885 677889999988877776653
|
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Probab=89.24 E-value=0.3 Score=46.11 Aligned_cols=33 Identities=18% Similarity=0.337 Sum_probs=27.1
Q ss_pred cEE-EEc-ccHHHHHHHHHHHHCCCeEEEEeCChH
Q psy9637 6 DIG-LIG-LAVMGQNLILNMNDHGFTVVAYNRTTA 38 (490)
Q Consensus 6 ~Ig-iIG-lG~MG~~lA~~L~~~G~~V~v~dr~~~ 38 (490)
||. |.| .|.+|+.++..|+++||+|++.||.+.
T Consensus 2 K~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~~~ 36 (357)
T d1db3a_ 2 KVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRAS 36 (357)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEECC---
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCcCEEEEEECCCc
Confidence 566 556 899999999999999999999998543
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Probab=88.97 E-value=0.32 Score=45.55 Aligned_cols=40 Identities=15% Similarity=0.341 Sum_probs=35.3
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHH
Q psy9637 5 GDIGLIG-LAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFL 44 (490)
Q Consensus 5 ~~IgiIG-lG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~ 44 (490)
++|.|.| .|.+|+.++..|+++||+|.+..|+.++.+.+.
T Consensus 12 k~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~~~~~~~~~ 52 (342)
T d1y1pa1 12 SLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQ 52 (342)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCchhHHHHH
Confidence 5899997 599999999999999999999999988776654
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=88.75 E-value=0.59 Score=39.28 Aligned_cols=44 Identities=16% Similarity=0.031 Sum_probs=36.0
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHccc
Q psy9637 5 GDIGLIG-LAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEA 48 (490)
Q Consensus 5 ~~IgiIG-lG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~ 48 (490)
.+|.|+| .|.+|.....-....|.+|++.++++++.+.+.+.|+
T Consensus 30 ~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~lGa 74 (179)
T d1qora2 30 EQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAGA 74 (179)
T ss_dssp CEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTC
T ss_pred CEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHhcCC
Confidence 4688885 5668888777777889999999999999988877664
|
| >d1euca1 c.2.1.8 (A:1-130) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=88.69 E-value=1.5 Score=35.25 Aligned_cols=111 Identities=10% Similarity=0.014 Sum_probs=76.7
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHHCCCeEEE-EeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCch
Q psy9637 4 KGDIGLIGL-AVMGQNLILNMNDHGFTVVA-YNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSA 81 (490)
Q Consensus 4 ~~~IgiIGl-G~MG~~lA~~L~~~G~~V~v-~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~ 81 (490)
..||-+-|. |+-|+.-+.++.+-|-+|+. ..+... |..-..+-.+++.+|+++.. .+|.-++-||+..+
T Consensus 15 ~TrVivQGiTG~~G~~ht~~m~~YGT~iVaGVtPgKg--------G~~~~giPVf~tV~eA~~~~-~~daSvIfVPp~~a 85 (130)
T d1euca1 15 NTKVICQGFTGKQGTFHSQQALEYGTNLVGGTTPGKG--------GKTHLGLPVFNTVKEAKEQT-GATASVIYVPPPFA 85 (130)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCT--------TCEETTEEEESSHHHHHHHH-CCCEEEECCCHHHH
T ss_pred CCeEEEEcCCCcHHHHHHHHHHHhcCCeEEeeccCCC--------CccccCccchhhHHHHHHhc-CCcEEEEecCHHHH
Confidence 468999997 99999999999999988764 333211 11112355689999999764 48999999999877
Q ss_pred HHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHc-ccccc
Q psy9637 82 VDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAK-GLLYV 125 (490)
Q Consensus 82 v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~-gi~~l 125 (490)
.+.+++.+...++ .+|+-.-.....|..+..+.+.++ +.+++
T Consensus 86 ~dAi~EAi~agI~--liV~ITEgIPv~Dm~~i~~~~~~~~~~~li 128 (130)
T d1euca1 86 AAAINEAIDAEVP--LVVCITEGIPQQDMVRVKHRLLRQGKTRLI 128 (130)
T ss_dssp HHHHHHHHHTTCS--EEEECCCCCCHHHHHHHHHHHTTCSSCEEE
T ss_pred HHHHHHHHhCCCC--EEEEecCCCCHHHHHHHHHHHHhCCCcEEe
Confidence 7788887766553 345555455666666666665444 34443
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=88.67 E-value=0.99 Score=42.72 Aligned_cols=32 Identities=16% Similarity=0.274 Sum_probs=28.9
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCeEEEEeCC
Q psy9637 5 GDIGLIG-LAVMGQNLILNMNDHGFTVVAYNRT 36 (490)
Q Consensus 5 ~~IgiIG-lG~MG~~lA~~L~~~G~~V~v~dr~ 36 (490)
|||-|.| .|.+|..+++.|+++||+|+++|--
T Consensus 2 ~kILVTGatGfiG~~lv~~Ll~~g~~V~~iDnl 34 (393)
T d1i24a_ 2 SRVMVIGGDGYCGWATALHLSKKNYEVCIVDNL 34 (393)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred CEEEEECCCcHHHHHHHHHHHHCcCEEEEEecC
Confidence 5898887 5999999999999999999999843
|
| >d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Leishmania major [TaxId: 5664]
Probab=88.64 E-value=0.81 Score=41.26 Aligned_cols=40 Identities=15% Similarity=0.365 Sum_probs=31.0
Q ss_pred CcEEEE--cccHHHHHHHHHHHHCCCeEEEEe-CChHHHHHHH
Q psy9637 5 GDIGLI--GLAVMGQNLILNMNDHGFTVVAYN-RTTAKVDSFL 44 (490)
Q Consensus 5 ~~IgiI--GlG~MG~~lA~~L~~~G~~V~v~d-r~~~~~~~l~ 44 (490)
+-|+|| |.+-+|..+|+.|+++|++|++.+ ++.+..+.+.
T Consensus 2 ~pVAlITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~ 44 (284)
T d1e7wa_ 2 VPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALS 44 (284)
T ss_dssp CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHH
Confidence 358888 457899999999999999998855 5555555544
|
| >d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Phenol hydroxylase species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]
Probab=88.54 E-value=0.14 Score=47.55 Aligned_cols=34 Identities=12% Similarity=0.189 Sum_probs=30.0
Q ss_pred CcEEEEcccHHHHHHHHHHH-----HCCCeEEEEeCChH
Q psy9637 5 GDIGLIGLAVMGQNLILNMN-----DHGFTVVAYNRTTA 38 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~-----~~G~~V~v~dr~~~ 38 (490)
-.|.|||.|..|..+|..|+ ++|++|+++++++.
T Consensus 8 yDV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~ 46 (360)
T d1pn0a1 8 CDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRST 46 (360)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSS
T ss_pred CCEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCC
Confidence 36999999999999999996 58999999998753
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.48 E-value=0.3 Score=40.28 Aligned_cols=31 Identities=19% Similarity=0.222 Sum_probs=29.1
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeC
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNR 35 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr 35 (490)
++|-|||.|.+|..-+..|++.|-+|+++.+
T Consensus 14 krvLViGgG~va~~ka~~Ll~~GA~VtVvap 44 (150)
T d1kyqa1 14 KRILLIGGGEVGLTRLYKLMPTGCKLTLVSP 44 (150)
T ss_dssp CEEEEEEESHHHHHHHHHHGGGTCEEEEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeC
Confidence 6899999999999999999999999999964
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=88.41 E-value=0.18 Score=41.90 Aligned_cols=33 Identities=12% Similarity=0.043 Sum_probs=29.7
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC--eEEEEeCCh
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGF--TVVAYNRTT 37 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~--~V~v~dr~~ 37 (490)
+||.|||.|..|..+|..|.+.|+ +|+++++++
T Consensus 3 krivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~ 37 (186)
T d1fcda1 3 RKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNT 37 (186)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred CcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence 589999999999999999999885 788998775
|
| >d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=88.23 E-value=0.18 Score=43.42 Aligned_cols=33 Identities=9% Similarity=0.125 Sum_probs=29.0
Q ss_pred CcEEEEcccHHHHHHHHHHHHC--CCeEEEEeCCh
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDH--GFTVVAYNRTT 37 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~--G~~V~v~dr~~ 37 (490)
|||.|||.|..|..+|..|.+. +.+|+++++++
T Consensus 1 ~KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~ 35 (198)
T d1nhpa1 1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGD 35 (198)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSS
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence 6899999999999999999886 45899998764
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=88.13 E-value=0.2 Score=40.38 Aligned_cols=33 Identities=15% Similarity=0.206 Sum_probs=30.7
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCCh
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTT 37 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~ 37 (490)
.++.|||.|.+|.-+|..|.+.|.+|++.++.+
T Consensus 27 ~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~ 59 (125)
T d1ojta2 27 GKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMD 59 (125)
T ss_dssp SEEEEESCSHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred CeEEEECCCHHHHHHHHHhhcCCCEEEEEEeec
Confidence 579999999999999999999999999998764
|
| >d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sepiapterin reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.12 E-value=0.31 Score=44.02 Aligned_cols=41 Identities=12% Similarity=0.234 Sum_probs=34.8
Q ss_pred CcEEEE-c-ccHHHHHHHHHHHH---CCCeEEEEeCChHHHHHHHH
Q psy9637 5 GDIGLI-G-LAVMGQNLILNMND---HGFTVVAYNRTTAKVDSFLA 45 (490)
Q Consensus 5 ~~IgiI-G-lG~MG~~lA~~L~~---~G~~V~v~dr~~~~~~~l~~ 45 (490)
-||+|| | ..-+|..+|+.|++ +|++|++.+|++++++++.+
T Consensus 6 gKvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~~~l~~~~~ 51 (259)
T d1oaaa_ 6 CAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKE 51 (259)
T ss_dssp SEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCHHHHHHHHH
Confidence 478888 5 46799999999986 79999999999998887654
|
| >d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=87.96 E-value=0.29 Score=45.56 Aligned_cols=88 Identities=13% Similarity=0.261 Sum_probs=50.9
Q ss_pred cEEEE-c-ccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCC-CCcEEEEecCCCchH
Q psy9637 6 DIGLI-G-LAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLK-KPRRVMMLVKAGSAV 82 (490)
Q Consensus 6 ~IgiI-G-lG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~-~~dvIil~vp~~~~v 82 (490)
|+.+| | .+-+|..+|+.|+++|++|++.|++.+.... +. .....+++++.+. ....+..-+.+...+
T Consensus 8 KvalITGas~GIG~aiA~~la~~Ga~Vvi~d~~~~~~~~----~~------~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 77 (302)
T d1gz6a_ 8 RVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGV----GK------GSSAADKVVEEIRRRGGKAVANYDSVEAG 77 (302)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSC----BC------CSHHHHHHHHHHHHTTCEEEEECCCGGGH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchhhhh----hh------hHHHHHHHHHHHhhcccccccccchHHHH
Confidence 56666 4 5779999999999999999999887542110 00 0111112221110 123334444444566
Q ss_pred HHHHHhhcccCCCCCEEEcCC
Q psy9637 83 DDFIDKLVPLLEKGDIIIDGG 103 (490)
Q Consensus 83 ~~vl~~l~~~l~~g~iiId~s 103 (490)
+++++.+.....+=|++|+..
T Consensus 78 ~~~v~~~~~~~G~iDiLVnNA 98 (302)
T d1gz6a_ 78 EKLVKTALDTFGRIDVVVNNA 98 (302)
T ss_dssp HHHHHHHHHHTSCCCEEEECC
T ss_pred HHHHHHHHHHcCCCCEEEECC
Confidence 777776666555557777653
|
| >d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Clostridium symbiosum [TaxId: 1512]
Probab=87.83 E-value=0.88 Score=41.17 Aligned_cols=116 Identities=12% Similarity=0.098 Sum_probs=63.2
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEE-e-------C---ChHHHHHHHHc-cc-CCCCee--------ccCCHHHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAY-N-------R---TTAKVDSFLAN-EA-KGTNII--------GAHSLEELV 63 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~-d-------r---~~~~~~~l~~~-g~-~~~~i~--------~~~s~~e~v 63 (490)
++|.|-|.|++|...|+.|.+.|..|+.. | . +.+.+.++... .. ....+. ..-+.+++.
T Consensus 37 ~~v~IQGfGnVG~~~a~~L~e~GakvvavsD~~G~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (255)
T d1bgva1 37 KTVALAGFGNVAWGAAKKLAELGAKAVTLSGPDGYIYDPEGITTEEKINYMLEMRASGRNKVQDYADKFGVQFFPGEKPW 116 (255)
T ss_dssp CEEEECCSSHHHHHHHHHHHHHTCEEEEEEETTEEEECTTCSCSHHHHHHHHHHHHHCCCCTHHHHHHHTCEEEETCCGG
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCceEecCCCCCHHHHHHHHHHHhhhcCcchhhhhhhcCceeechhhcc
Confidence 58999999999999999999999988743 3 2 23332222111 00 000000 001122222
Q ss_pred hhCCCCcEEEEecCCCchHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHcccccc
Q psy9637 64 KNLKKPRRVMMLVKAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGLLYV 125 (490)
Q Consensus 64 ~~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi~~l 125 (490)
.. ++|+++-|-..+....+.++.|... .=++|+...|.. .+.......++++||.++
T Consensus 117 ~~--~~DiliPcA~~~~I~~~~a~~l~a~--~ck~I~EgAN~p-~t~ea~~~ll~~~gI~vv 173 (255)
T d1bgva1 117 GQ--KVDIIMPCATQNDVDLEQAKKIVAN--NVKYYIEVANMP-TTNEALRFLMQQPNMVVA 173 (255)
T ss_dssp GS--CCSEEECCSCTTCBCHHHHHHHHHT--TCCEEECCSSSC-BCHHHHHHHHHCTTCEEE
T ss_pred cc--cccEEeeccccccccHHHHHhhhhc--CceEEecCCCCC-cchHHHHHHHHhcCCEEe
Confidence 21 4898876655444444555555321 116888888864 333333334566788664
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=87.67 E-value=0.43 Score=43.04 Aligned_cols=40 Identities=18% Similarity=0.419 Sum_probs=30.4
Q ss_pred cEEEE--cccHHHHHHHHHHHHCCCeEEE-EeCChHHHHHHHH
Q psy9637 6 DIGLI--GLAVMGQNLILNMNDHGFTVVA-YNRTTAKVDSFLA 45 (490)
Q Consensus 6 ~IgiI--GlG~MG~~lA~~L~~~G~~V~v-~dr~~~~~~~l~~ 45 (490)
|+.+| |.+-+|..+|+.|+++|++|++ ++++.+..+.+.+
T Consensus 7 K~alITGas~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~ 49 (259)
T d1ja9a_ 7 KVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVA 49 (259)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHH
Confidence 45555 5677999999999999999997 5677666665543
|
| >d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Polymyxin resistance protein ArnA (PrmI) species: Escherichia coli [TaxId: 562]
Probab=87.44 E-value=0.23 Score=46.34 Aligned_cols=39 Identities=13% Similarity=0.250 Sum_probs=31.9
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCC-eEEEEeCChHHHHHH
Q psy9637 5 GDIGLIG-LAVMGQNLILNMNDHGF-TVVAYNRTTAKVDSF 43 (490)
Q Consensus 5 ~~IgiIG-lG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l 43 (490)
|||-|.| .|.+|+.++..|+++|| +|++.|+.......+
T Consensus 1 MKILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~~~~~~~ 41 (342)
T d2blla1 1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRF 41 (342)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGGG
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCcchhhh
Confidence 5899997 59999999999999995 899999875544433
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=87.19 E-value=0.25 Score=46.17 Aligned_cols=38 Identities=29% Similarity=0.290 Sum_probs=33.4
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCeEEEEeCChHHHHH
Q psy9637 5 GDIGLIG-LAVMGQNLILNMNDHGFTVVAYNRTTAKVDS 42 (490)
Q Consensus 5 ~~IgiIG-lG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~ 42 (490)
+||-|.| .|.+|+.++..|+++||+|.++||++.+...
T Consensus 9 KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~~~~~ 47 (356)
T d1rkxa_ 9 KRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPS 47 (356)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSSSC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCccHH
Confidence 6899998 7999999999999999999999998664433
|
| >d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.84 E-value=0.14 Score=44.87 Aligned_cols=37 Identities=16% Similarity=0.274 Sum_probs=32.1
Q ss_pred CCCCCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCCh
Q psy9637 1 MAAKGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTT 37 (490)
Q Consensus 1 M~~~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~ 37 (490)
|+.+-.|.|||.|.-|..-|..+++.|++|.++++.+
T Consensus 2 m~~~yDviVIG~GpAGl~aA~~aa~~G~kV~lie~~~ 38 (233)
T d1v59a1 2 INKSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRG 38 (233)
T ss_dssp EEEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred CCcccCEEEECCCHHHHHHHHHHHHCCCcEEEEEecC
Confidence 4434569999999999999999999999999999753
|
| >d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.61 E-value=0.3 Score=45.51 Aligned_cols=33 Identities=18% Similarity=0.312 Sum_probs=28.6
Q ss_pred CcEE-EEc-ccHHHHHHHHHHHHCCCeEEEEeCCh
Q psy9637 5 GDIG-LIG-LAVMGQNLILNMNDHGFTVVAYNRTT 37 (490)
Q Consensus 5 ~~Ig-iIG-lG~MG~~lA~~L~~~G~~V~v~dr~~ 37 (490)
+||+ |.| .|.+|+.++..|.++||+|++.||.+
T Consensus 1 kKI~LVTG~tGfIG~~l~~~Ll~~g~~V~~i~r~~ 35 (347)
T d1t2aa_ 1 RNVALITGITGQDGSYLAEFLLEKGYEVHGIVRRS 35 (347)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred CCEEEEecCCcHHHHHHHHHHHHCcCEEEEEECCC
Confidence 4785 555 69999999999999999999999864
|
| >d2h1qa1 c.67.3.1 (A:1-251) Hypothetical protein Dhaf_3308 {Desulfitobacterium hafniense [TaxId: 49338]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: Dhaf3308-like family: Dhaf3308-like domain: Hypothetical protein Dhaf 3308 species: Desulfitobacterium hafniense [TaxId: 49338]
Probab=85.75 E-value=0.25 Score=44.85 Aligned_cols=81 Identities=14% Similarity=0.145 Sum_probs=56.8
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDD 84 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~ 84 (490)
.||++||. + ++...+.+.|.++.++||+|. .+. .+....++++.. +|+||+.-. .-+..
T Consensus 123 ~kV~vIG~--~--P~v~~l~~~~~~~~VlE~~p~-------~gd-----~p~~~~~~lLp~---aD~viiTGs--TlvN~ 181 (251)
T d2h1qa1 123 KKVGVVGH--F--PHLESLLEPICDLSILEWSPE-------EGD-----YPLPASEFILPE---CDYVYITCA--SVVDK 181 (251)
T ss_dssp SEEEEESC--C--TTHHHHHTTTSEEEEEESSCC-------TTC-----EEGGGHHHHGGG---CSEEEEETH--HHHHT
T ss_pred CEEEEEec--c--hhHHHHHhcCCcEEEEeCCCC-------CCC-----CCchHHHHhhhc---CCEEEEEec--hhhcC
Confidence 58999975 4 677788899999999999963 111 123344555555 999997653 36777
Q ss_pred HHHhhcccCCCCCEEEcCCCCC
Q psy9637 85 FIDKLVPLLEKGDIIIDGGNSE 106 (490)
Q Consensus 85 vl~~l~~~l~~g~iiId~s~~~ 106 (490)
.++.|+...++...||-.|-+.
T Consensus 182 Tl~~LL~~~~~a~~vvl~GPS~ 203 (251)
T d2h1qa1 182 TLPRLLELSRNARRITLVGPGT 203 (251)
T ss_dssp CHHHHHHHTTTSSEEEEESTTC
T ss_pred CHHHHHHhCCcCCEEEEECCCc
Confidence 7888888887777666555443
|
| >d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Drosophila alcohol dehydrogenase species: Fly (Drosophila lebanonensis) [TaxId: 7225]
Probab=85.70 E-value=1.5 Score=39.18 Aligned_cols=83 Identities=11% Similarity=0.138 Sum_probs=47.5
Q ss_pred cEEEEc-ccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCC--C-ch
Q psy9637 6 DIGLIG-LAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKA--G-SA 81 (490)
Q Consensus 6 ~IgiIG-lG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~--~-~~ 81 (490)
.|-|.| .+-+|..+|+.|++.|++|++..|+.++.+.+.+. .......++.+..+-. + ..
T Consensus 7 ~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~~~~~~~~~----------------~~~~~~~~~~~~~~d~~~~~~~ 70 (254)
T d1sbya1 7 NVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAEL----------------KAINPKVNITFHTYDVTVPVAE 70 (254)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHHHHHH----------------HHHCTTSEEEEEECCTTSCHHH
T ss_pred EEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcccHHHHHHH----------------HhhCCCCCEEEEEeecCCCHHH
Confidence 344445 45799999999999999988876665544333221 1111113344433322 1 24
Q ss_pred HHHHHHhhcccCCCCCEEEcCCC
Q psy9637 82 VDDFIDKLVPLLEKGDIIIDGGN 104 (490)
Q Consensus 82 v~~vl~~l~~~l~~g~iiId~s~ 104 (490)
++++++.+.....+=|++|....
T Consensus 71 ~~~~~~~~~~~~g~iDilvnnAG 93 (254)
T d1sbya1 71 SKKLLKKIFDQLKTVDILINGAG 93 (254)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHHHcCCCCEEEeCCC
Confidence 56666666655545567776543
|
| >d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=85.58 E-value=1.4 Score=38.98 Aligned_cols=34 Identities=24% Similarity=0.504 Sum_probs=28.2
Q ss_pred EEEE--cccHHHHHHHHHHHHCCCeEEEEeCChHHH
Q psy9637 7 IGLI--GLAVMGQNLILNMNDHGFTVVAYNRTTAKV 40 (490)
Q Consensus 7 IgiI--GlG~MG~~lA~~L~~~G~~V~v~dr~~~~~ 40 (490)
+++| |.+-+|..+|+.|+++|++|++.+|+.++.
T Consensus 3 vAlVTGas~GIG~aia~~la~~G~~Vvi~~r~~~~~ 38 (266)
T d1mxha_ 3 AAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGA 38 (266)
T ss_dssp EEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchHH
Confidence 4555 456699999999999999999999986653
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=85.58 E-value=1.5 Score=38.83 Aligned_cols=122 Identities=19% Similarity=0.144 Sum_probs=69.6
Q ss_pred CCcEEEEcccH--HHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCee----ccCCHHHHHhhCCCCcEEEEecC
Q psy9637 4 KGDIGLIGLAV--MGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNII----GAHSLEELVKNLKKPRRVMMLVK 77 (490)
Q Consensus 4 ~~~IgiIGlG~--MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~----~~~s~~e~v~~l~~~dvIil~vp 77 (490)
.++|.=+|+|. .-..+|.. ... -.|++.|.++..++.+.+......++. ....+..........|+++..+.
T Consensus 75 G~~VLDlGcGsG~~~~~la~~-~~~-g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~v~~i~~~~~ 152 (230)
T d1g8sa_ 75 DSKILYLGASAGTTPSHVADI-ADK-GIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIYEDVA 152 (230)
T ss_dssp TCEEEEESCCSSHHHHHHHHH-TTT-SEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTCCCEEEEEECCC
T ss_pred CCEEEEeCEEcCHHHHHHHHh-CCC-CEEEEEeCcHHHHHHHHHHHhhhcccceEEEeeccCcccccccceeEEeecccc
Confidence 36788888764 33334432 223 389999999998888776433222221 12333333322223455666566
Q ss_pred CCchHHHHHHhhcccCCCCCEEEc-------CCCCChHHHHHHH-HHHHHcccccccc
Q psy9637 78 AGSAVDDFIDKLVPLLEKGDIIID-------GGNSEYQDTDRRS-KALEAKGLLYVGC 127 (490)
Q Consensus 78 ~~~~v~~vl~~l~~~l~~g~iiId-------~s~~~~~~~~~~~-~~l~~~gi~~ld~ 127 (490)
...+.+.++..+...|++|-.++- -++..+....+.. +.+++.|+..++.
T Consensus 153 ~~~~~~~~l~~~~r~LKpgG~~~i~~k~~~~d~~~~~~~~~~e~~~~L~~aGF~ive~ 210 (230)
T d1g8sa_ 153 QPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKEILEAGGFKIVDE 210 (230)
T ss_dssp STTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHHHHHHHTEEEEEE
T ss_pred chHHHHHHHHHHHHhcccCceEEEEeeccccCCCCCHHHHHHHHHHHHHHcCCEEEEE
Confidence 555677778888778877765432 2344555444333 6677778766554
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=85.52 E-value=0.65 Score=39.32 Aligned_cols=94 Identities=13% Similarity=0.043 Sum_probs=58.6
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeec-cCCH-HHHHh--hCCCCcEEEEecCCC
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIG-AHSL-EELVK--NLKKPRRVMMLVKAG 79 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~-~~s~-~e~v~--~l~~~dvIil~vp~~ 79 (490)
.+|-|.|. |.+|.....-....|.+|++..+++++.+.+.+.|... -+.. ..+. +.+.+ .-+..|+||-++..
T Consensus 31 ~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~Ga~~-vi~~~~~~~~~~~~~~~~~~Gvd~v~D~vG~- 108 (182)
T d1v3va2 31 ETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGFDA-AFNYKTVNSLEEALKKASPDGYDCYFDNVGG- 108 (182)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSE-EEETTSCSCHHHHHHHHCTTCEEEEEESSCH-
T ss_pred CEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHhhhhhh-hcccccccHHHHHHHHhhcCCCceeEEecCc-
Confidence 45778787 66887777777788999999999999998888776531 1111 1222 22222 12347888877742
Q ss_pred chHHHHHHhhcccCCCCCEEEcCCC
Q psy9637 80 SAVDDFIDKLVPLLEKGDIIIDGGN 104 (490)
Q Consensus 80 ~~v~~vl~~l~~~l~~g~iiId~s~ 104 (490)
+ .++...+.+.++-.++..|+
T Consensus 109 ~----~~~~~~~~l~~~G~~v~~G~ 129 (182)
T d1v3va2 109 E----FLNTVLSQMKDFGKIAICGA 129 (182)
T ss_dssp H----HHHHHGGGEEEEEEEEECCC
T ss_pred h----hhhhhhhhccCCCeEEeecc
Confidence 2 33455555666666666654
|
| >d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]
Probab=85.44 E-value=0.58 Score=41.96 Aligned_cols=37 Identities=11% Similarity=0.104 Sum_probs=31.1
Q ss_pred CcEEEEcc-cH--HHHHHHHHHHHCCCeEEEEeCChHHHH
Q psy9637 5 GDIGLIGL-AV--MGQNLILNMNDHGFTVVAYNRTTAKVD 41 (490)
Q Consensus 5 ~~IgiIGl-G~--MG~~lA~~L~~~G~~V~v~dr~~~~~~ 41 (490)
+++-|.|. |. +|.++|+.|+++|++|++.+|+.++..
T Consensus 7 K~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~~~~~ 46 (268)
T d2h7ma1 7 KRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLI 46 (268)
T ss_dssp CEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSCHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCChHHHH
Confidence 46777785 54 999999999999999999999987653
|
| >d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=85.40 E-value=0.18 Score=47.42 Aligned_cols=33 Identities=15% Similarity=0.131 Sum_probs=28.2
Q ss_pred CCCcEEEEc-ccHHHHHHHHHHHHCCCeEEEEeC
Q psy9637 3 AKGDIGLIG-LAVMGQNLILNMNDHGFTVVAYNR 35 (490)
Q Consensus 3 ~~~~IgiIG-lG~MG~~lA~~L~~~G~~V~v~dr 35 (490)
+||||-|.| .|.+|+.|+..|.++||+|.++++
T Consensus 1 ~~mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~~ 34 (346)
T d1oc2a_ 1 QFKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVL 34 (346)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEE
T ss_pred CcCEEEEeCCCcHHHHHHHHHHHHCCCCeEEEEE
Confidence 368999998 799999999999999998665543
|
| >d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]
Probab=84.77 E-value=0.33 Score=44.07 Aligned_cols=33 Identities=12% Similarity=0.292 Sum_probs=30.0
Q ss_pred cEEEEcccHHHHHHHHHHHH-CCCeEEEEeCChH
Q psy9637 6 DIGLIGLAVMGQNLILNMND-HGFTVVAYNRTTA 38 (490)
Q Consensus 6 ~IgiIGlG~MG~~lA~~L~~-~G~~V~v~dr~~~ 38 (490)
.|.|||.|.-|...|..|++ .|++|+++|+.+.
T Consensus 35 DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~ 68 (278)
T d1rp0a1 35 DVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVS 68 (278)
T ss_dssp EEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSS
T ss_pred CEEEECCCHHHHHHHHHHHHccCCeEEEEecCCC
Confidence 59999999999999999987 5999999998753
|
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.67 E-value=0.46 Score=43.85 Aligned_cols=33 Identities=18% Similarity=0.264 Sum_probs=29.4
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHHCCCeEEEEeCC
Q psy9637 4 KGDIGLIG-LAVMGQNLILNMNDHGFTVVAYNRT 36 (490)
Q Consensus 4 ~~~IgiIG-lG~MG~~lA~~L~~~G~~V~v~dr~ 36 (490)
++||-|.| .|.+|+.++..|+++||+|+++|+.
T Consensus 1 kKKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~~ 34 (312)
T d2b69a1 1 RKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNF 34 (312)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCC
Confidence 36899997 6999999999999999999999863
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=84.57 E-value=0.23 Score=44.27 Aligned_cols=97 Identities=12% Similarity=0.087 Sum_probs=60.5
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHccc-CCCCee-ccCCHHHHHhhCCCCcEEEEe------c
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEA-KGTNII-GAHSLEELVKNLKKPRRVMML------V 76 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~-~~~~i~-~~~s~~e~v~~l~~~dvIil~------v 76 (490)
.+|-=||+|. ..++..|++.|++|++.|.|++.++.+.+... .+.++. ...+..++-- -+.-|+|+++ +
T Consensus 39 ~~vLDiGCG~--G~~~~~l~~~g~~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~i~~~~~~~~~~ 115 (246)
T d1y8ca_ 39 DDYLDLACGT--GNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNI-NRKFDLITCCLDSTNYI 115 (246)
T ss_dssp TEEEEETCTT--STTHHHHGGGSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCC-SCCEEEEEECTTGGGGC
T ss_pred CeEEEEeCcC--CHHHHHHHHhCCccEeeccchhhhhhccccccccCccceeeccchhhhcc-cccccccceeeeeeecc
Confidence 4688888883 34677788899999999999998776544311 111222 2345544321 1235888864 2
Q ss_pred CCCchHHHHHHhhcccCCCCC-EEEcCCC
Q psy9637 77 KAGSAVDDFIDKLVPLLEKGD-IIIDGGN 104 (490)
Q Consensus 77 p~~~~v~~vl~~l~~~l~~g~-iiId~s~ 104 (490)
++......+++.+...|+||- +|+|..+
T Consensus 116 ~~~~~~~~~l~~~~~~LkpgG~~i~~~~~ 144 (246)
T d1y8ca_ 116 IDSDDLKKYFKAVSNHLKEGGVFIFDINS 144 (246)
T ss_dssp CSHHHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred CCHHHHHHHHHHHHHhCCCCeEEEEEeCC
Confidence 344456677888888888765 5656543
|
| >d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.40 E-value=0.44 Score=44.38 Aligned_cols=33 Identities=21% Similarity=0.444 Sum_probs=29.2
Q ss_pred CCCCCcEEEEc-ccHHHHHHHHHHHHCCCeEEEEeC
Q psy9637 1 MAAKGDIGLIG-LAVMGQNLILNMNDHGFTVVAYNR 35 (490)
Q Consensus 1 M~~~~~IgiIG-lG~MG~~lA~~L~~~G~~V~v~dr 35 (490)
|+ +||-|.| .|.+|+.|+..|+++||+|++.|+
T Consensus 1 M~--kKILITG~tGfIGs~lv~~Ll~~g~~V~~ld~ 34 (346)
T d1ek6a_ 1 MA--EKVLVTGGAGYIGSHTVLELLEAGYLPVVIDN 34 (346)
T ss_dssp CC--SEEEEETTTSHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CC--CeEEEECCCcHHHHHHHHHHHHCcCEEEEEEC
Confidence 64 4898887 699999999999999999999975
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=84.36 E-value=0.41 Score=42.42 Aligned_cols=97 Identities=14% Similarity=0.149 Sum_probs=58.9
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccC-CCCee-ccCCHHHHHhhCCCCcEEEEec-----C
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAK-GTNII-GAHSLEELVKNLKKPRRVMMLV-----K 77 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~-~~~i~-~~~s~~e~v~~l~~~dvIil~v-----p 77 (490)
.+|-=||+|. | .++..|+++|++|++.|.+++-++...+.... +.++. ...+..++--. +.-|+|+++- .
T Consensus 43 ~~iLDiGcGt-G-~~~~~l~~~~~~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~~~l~~~-~~fD~I~~~~~~~~~~ 119 (251)
T d1wzna1 43 RRVLDLACGT-G-IPTLELAERGYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFK-NEFDAVTMFFSTIMYF 119 (251)
T ss_dssp CEEEEETCTT-C-HHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCC-SCEEEEEECSSGGGGS
T ss_pred CEEEEeCCCC-C-ccchhhcccceEEEEEeeccccccccccccccccccchheehhhhhcccc-cccchHhhhhhhhhcC
Confidence 4688899996 4 55678999999999999999887766553211 11221 23344333211 1247777642 2
Q ss_pred CCchHHHHHHhhcccCCCCC-EEEcCCC
Q psy9637 78 AGSAVDDFIDKLVPLLEKGD-IIIDGGN 104 (490)
Q Consensus 78 ~~~~v~~vl~~l~~~l~~g~-iiId~s~ 104 (490)
+......++..+...|+||- +|+|..+
T Consensus 120 ~~~~~~~~L~~~~~~LkpgG~lii~~~~ 147 (251)
T d1wzna1 120 DEEDLRKLFSKVAEALKPGGVFITDFPC 147 (251)
T ss_dssp CHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred ChHHHHHHHHHHHHHcCCCcEEEEEecc
Confidence 22345567777777777765 5565543
|
| >d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Pyranose 2-oxidase species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]
Probab=84.28 E-value=0.38 Score=44.92 Aligned_cols=35 Identities=20% Similarity=0.387 Sum_probs=31.0
Q ss_pred CCCCCcEEEEcccHHHHHHHHHHHHCCCeEEEEeC
Q psy9637 1 MAAKGDIGLIGLAVMGQNLILNMNDHGFTVVAYNR 35 (490)
Q Consensus 1 M~~~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr 35 (490)
|...-.+-|||.|.-|..+|.+|+++|++|.+.++
T Consensus 1 md~~yDviIVGsG~aG~v~A~~La~~G~kVlvLEa 35 (379)
T d2f5va1 1 MDIKYDVVIVGSGPIGCTYARELVGAGYKVAMFDI 35 (379)
T ss_dssp CCSEEEEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred CCCcccEEEECcCHHHHHHHHHHhhCCCeEEEEec
Confidence 54445799999999999999999999999999875
|
| >d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein PA4017 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=83.95 E-value=0.31 Score=42.16 Aligned_cols=65 Identities=17% Similarity=0.199 Sum_probs=42.6
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCC--eEEEEeCChHHHHHHHHcccCCCCe-eccCCHHHHHhhCC-CCcEEEEecCC
Q psy9637 5 GDIGLIGL-AVMGQNLILNMNDHGF--TVVAYNRTTAKVDSFLANEAKGTNI-IGAHSLEELVKNLK-KPRRVMMLVKA 78 (490)
Q Consensus 5 ~~IgiIGl-G~MG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~g~~~~~i-~~~~s~~e~v~~l~-~~dvIil~vp~ 78 (490)
+||.|+|. |.+|..+++.|.++|+ .|....|++.. . ..++ ....+..++...+. ..|.|+.|+..
T Consensus 3 KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~~~--~-------~~~~~~~~~d~~~~~~~~~~~~d~vi~~~g~ 72 (212)
T d2a35a1 3 KRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALA--E-------HPRLDNPVGPLAELLPQLDGSIDTAFCCLGT 72 (212)
T ss_dssp CEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCC--C-------CTTEECCBSCHHHHGGGCCSCCSEEEECCCC
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCchh--h-------cccccccccchhhhhhccccchheeeeeeee
Confidence 58999986 9999999999999998 45555554321 0 0111 12455666665543 36888887643
|
| >d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative carbonyl reductase sniffer species: Caenorhabditis elegans [TaxId: 6239]
Probab=83.87 E-value=0.88 Score=40.55 Aligned_cols=44 Identities=18% Similarity=0.306 Sum_probs=33.5
Q ss_pred CCCCCcEEEEc-ccHHHHHHHHHHHHCCC--eEEEEeCChHHHHHHHH
Q psy9637 1 MAAKGDIGLIG-LAVMGQNLILNMNDHGF--TVVAYNRTTAKVDSFLA 45 (490)
Q Consensus 1 M~~~~~IgiIG-lG~MG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~ 45 (490)
|++ +.|-|.| .+-+|..+|+.|++.|+ .|++..|+.++.+++.+
T Consensus 1 M~~-KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~~~~~~l~~ 47 (250)
T d1yo6a1 1 MSP-GSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKS 47 (250)
T ss_dssp CCC-SEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHHHT
T ss_pred CcC-CEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHHH
Confidence 653 3565556 57899999999999996 57778999887776653
|
| >d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=83.39 E-value=0.37 Score=40.32 Aligned_cols=34 Identities=9% Similarity=0.233 Sum_probs=29.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCCh
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTT 37 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~ 37 (490)
..+|.|||.|..|.-+|..|.+.|.+|++..+.+
T Consensus 3 ~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~ 36 (185)
T d1q1ra1 3 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGD 36 (185)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECS
T ss_pred CCCEEEECCcHHHHHHHHHHHHcCCceEEEEecC
Confidence 4689999999999999999999999988765543
|
| >d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=83.17 E-value=0.37 Score=42.44 Aligned_cols=33 Identities=21% Similarity=0.434 Sum_probs=28.2
Q ss_pred cEEEE--cccHHHHHHHHHHHHCCCeEEEEeCChH
Q psy9637 6 DIGLI--GLAVMGQNLILNMNDHGFTVVAYNRTTA 38 (490)
Q Consensus 6 ~IgiI--GlG~MG~~lA~~L~~~G~~V~v~dr~~~ 38 (490)
|+.+| |.+-+|..+|+.|+++|++|++.||+++
T Consensus 2 K~alITGas~GIG~aiA~~la~~Ga~V~i~~~~~~ 36 (241)
T d1uaya_ 2 RSALVTGGASGLGRAAALALKARGYRVVVLDLRRE 36 (241)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCC
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcc
Confidence 45566 4588999999999999999999999854
|
| >d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=83.17 E-value=0.46 Score=41.09 Aligned_cols=31 Identities=19% Similarity=0.009 Sum_probs=29.4
Q ss_pred cEEEEcccHHHHHHHHHHHHCCCeEEEEeCC
Q psy9637 6 DIGLIGLAVMGQNLILNMNDHGFTVVAYNRT 36 (490)
Q Consensus 6 ~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~ 36 (490)
.|.|||.|.-|...|..+++.|.+|.+++++
T Consensus 4 DvvVIG~G~aG~~aA~~a~~~G~kV~iiE~~ 34 (217)
T d1gesa1 4 DYIAIGGGSGGIASINRAAMYGQKCALIEAK 34 (217)
T ss_dssp EEEEECCSHHHHHHHHHHHTTTCCEEEEESS
T ss_pred CEEEECCCHHHHHHHHHHHHCCCEEEEEecc
Confidence 5899999999999999999999999999975
|
| >d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=82.86 E-value=0.44 Score=39.32 Aligned_cols=32 Identities=13% Similarity=0.296 Sum_probs=27.8
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCCh
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTT 37 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~ 37 (490)
.||.|||.|..|.-+|..|.+ +++|+++++.+
T Consensus 1 ~rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~ 32 (167)
T d1xhca1 1 SKVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEP 32 (167)
T ss_dssp CEEEEECCSHHHHHHHHHHTT-TSEEEEECSSS
T ss_pred CeEEEECCcHHHHHHHHHHHc-CCCEEEEeccc
Confidence 389999999999999999864 78999998753
|
| >d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: UBA3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.68 E-value=0.41 Score=46.84 Aligned_cols=33 Identities=24% Similarity=0.379 Sum_probs=30.2
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-eEEEEeCCh
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGF-TVVAYNRTT 37 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~ 37 (490)
.||.|||+|.+|..++++|+..|+ +++++|.+.
T Consensus 38 ~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D~ 71 (426)
T d1yovb1 38 CKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDT 71 (426)
T ss_dssp CCEEEECSSTTHHHHHHHHHTTTCCCEEEECCCB
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEEECCC
Confidence 589999999999999999999998 799998764
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=82.67 E-value=0.61 Score=40.18 Aligned_cols=99 Identities=13% Similarity=0.156 Sum_probs=57.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccC-CCCe-eccCCHHHHHhhCCCCcEEEEecCC---
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAK-GTNI-IGAHSLEELVKNLKKPRRVMMLVKA--- 78 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~-~~~i-~~~~s~~e~v~~l~~~dvIil~vp~--- 78 (490)
..+|-=||+|. ..++..|++.|++|++.|.+++.++...+.... +..+ ....+..++...-..-|+|++.---
T Consensus 38 ~~~ILDiGcG~--G~~~~~la~~~~~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l~~~~~~fD~I~~~~~l~~~ 115 (226)
T d1ve3a1 38 RGKVLDLACGV--GGFSFLLEDYGFEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHF 115 (226)
T ss_dssp CCEEEEETCTT--SHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGGGC
T ss_pred CCEEEEECCCc--chhhhhHhhhhcccccccccccchhhhhhhhccccccccccccccccccccCcCceEEEEecchhhC
Confidence 35788899985 446678889999999999999988765543111 1111 1223333322111225777654321
Q ss_pred -CchHHHHHHhhcccCCCCC-EEEcCCC
Q psy9637 79 -GSAVDDFIDKLVPLLEKGD-IIIDGGN 104 (490)
Q Consensus 79 -~~~v~~vl~~l~~~l~~g~-iiId~s~ 104 (490)
+.....++.++...|+||- ++|...+
T Consensus 116 ~~~d~~~~l~~i~~~LkpgG~lii~~~~ 143 (226)
T d1ve3a1 116 EPLELNQVFKEVRRVLKPSGKFIMYFTD 143 (226)
T ss_dssp CHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred ChhHHHHHHHHHHHHcCcCcEEEEEEcC
Confidence 1234556778888887765 4555443
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=82.40 E-value=0.6 Score=40.84 Aligned_cols=91 Identities=16% Similarity=0.157 Sum_probs=56.6
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCC---Cch
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKA---GSA 81 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~---~~~ 81 (490)
.+|-=||+| -+.++..|++.|++|++.|.++..++.+.+.+.. .+ ...+..++--.-..-|+|+.+-.. -..
T Consensus 44 ~~vLDiGcG--~G~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~--~~-~~~~~~~l~~~~~~fD~ii~~~~~~~~~~d 118 (246)
T d2avna1 44 CRVLDLGGG--TGKWSLFLQERGFEVVLVDPSKEMLEVAREKGVK--NV-VEAKAEDLPFPSGAFEAVLALGDVLSYVEN 118 (246)
T ss_dssp CEEEEETCT--TCHHHHHHHTTTCEEEEEESCHHHHHHHHHHTCS--CE-EECCTTSCCSCTTCEEEEEECSSHHHHCSC
T ss_pred CEEEEECCC--CchhcccccccceEEEEeeccccccccccccccc--cc-ccccccccccccccccceeeecchhhhhhh
Confidence 478888988 3456678889999999999999999887765432 11 122333321100125777754211 013
Q ss_pred HHHHHHhhcccCCCCCEEE
Q psy9637 82 VDDFIDKLVPLLEKGDIII 100 (490)
Q Consensus 82 v~~vl~~l~~~l~~g~iiI 100 (490)
.+.+++++...|+||-+++
T Consensus 119 ~~~~l~~i~r~Lk~gG~~i 137 (246)
T d2avna1 119 KDKAFSEIRRVLVPDGLLI 137 (246)
T ss_dssp HHHHHHHHHHHEEEEEEEE
T ss_pred HHHHHHHHHhhcCcCcEEE
Confidence 4567777777787776544
|
| >d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=82.23 E-value=1.3 Score=39.17 Aligned_cols=33 Identities=18% Similarity=0.274 Sum_probs=27.4
Q ss_pred cEEEE-c-ccHHHHHHHHHHHHCCCeEEEEeCChH
Q psy9637 6 DIGLI-G-LAVMGQNLILNMNDHGFTVVAYNRTTA 38 (490)
Q Consensus 6 ~IgiI-G-lG~MG~~lA~~L~~~G~~V~v~dr~~~ 38 (490)
|+.+| | .+-+|..+|+.|++.|++|++.+|+.+
T Consensus 8 K~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~ 42 (237)
T d1uzma1 8 RSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSG 42 (237)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSC
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcc
Confidence 44455 5 467999999999999999999999854
|
| >d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=81.82 E-value=0.57 Score=42.81 Aligned_cols=32 Identities=19% Similarity=0.355 Sum_probs=30.2
Q ss_pred cEEEEcccHHHHHHHHHHHHCCCeEEEEeCCh
Q psy9637 6 DIGLIGLAVMGQNLILNMNDHGFTVVAYNRTT 37 (490)
Q Consensus 6 ~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~ 37 (490)
.|.|||.|.-|...|..|+++|++|++.++.+
T Consensus 18 DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~~ 49 (308)
T d1y0pa2 18 DVVVVGSGGAGFSAAISATDSGAKVILIEKEP 49 (308)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 69999999999999999999999999999864
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.52 E-value=0.57 Score=41.21 Aligned_cols=41 Identities=12% Similarity=0.105 Sum_probs=35.2
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcc
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANE 47 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g 47 (490)
.+|-.+|+|. | ..+..|++.|++|+++|.+++.++.+.+..
T Consensus 47 ~rvLd~GCG~-G-~~a~~LA~~G~~V~gvD~S~~ai~~a~~~~ 87 (229)
T d2bzga1 47 LRVFFPLCGK-A-VEMKWFADRGHSVVGVEISELGIQEFFTEQ 87 (229)
T ss_dssp CEEEETTCTT-C-THHHHHHHTTCEEEEECSCHHHHHHHHHHT
T ss_pred CEEEEeCCCC-c-HHHHHHHhCCCcEEEEeCCHHHHHHHHHHh
Confidence 5899999997 4 568899999999999999999998876643
|
| >d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Mitochondrial NAD(P)-dependent malic enzyme species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.39 E-value=0.5 Score=43.73 Aligned_cols=102 Identities=15% Similarity=0.218 Sum_probs=63.6
Q ss_pred CcEEEEcccHHHHHHHHHHHHC----CC-------eEEEEeCC----hHH---HHHHHHcccCCCCeeccCCHHHHHhhC
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDH----GF-------TVVAYNRT----TAK---VDSFLANEAKGTNIIGAHSLEELVKNL 66 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~----G~-------~V~v~dr~----~~~---~~~l~~~g~~~~~i~~~~s~~e~v~~l 66 (490)
.||-|.|.|.-|..+|..|... |. +++++|+. .++ .+...+...+...-....++.|+++.+
T Consensus 26 ~kiv~~GAGsAg~gia~ll~~~~~~~g~~~~~a~~~i~lvD~~Glv~~~r~~~~~~~k~~~a~~~~~~~~~~L~e~i~~~ 105 (294)
T d1pj3a1 26 HKILFLGAGEAALGIANLIVMSMVENGLSEQEAQKKIWMFDKYGLLVKGRKAKIDSYQEPFTHSAPESIPDTFEDAVNIL 105 (294)
T ss_dssp CCEEEECCSHHHHHHHHHHHHHHHHTTCCHHHHHHTEEEEETTEECBTTCSSCCCTTTGGGCBCCCSSCCSSHHHHHHHH
T ss_pred cEEEEECccHHHHHHHHHHHHHHHhcCCchhhccccEEEEeCCCCccCCCCcccHHHHHHhhccccccchhHHHHHHHhc
Confidence 4799999999999999886543 43 48888863 111 111111111100111245899998755
Q ss_pred CCCcEEEEec-CCCchHHHHHHhhcccCCCCCEEEcCCCCChH
Q psy9637 67 KKPRRVMMLV-KAGSAVDDFIDKLVPLLEKGDIIIDGGNSEYQ 108 (490)
Q Consensus 67 ~~~dvIil~v-p~~~~v~~vl~~l~~~l~~g~iiId~s~~~~~ 108 (490)
+ ++++|-+. +.+...+++++.+.. ..+.-||.-+||-.++
T Consensus 106 k-ptvliG~S~~~g~ft~evi~~Ma~-~~~~PIIFaLSNPt~~ 146 (294)
T d1pj3a1 106 K-PSTIIGVAGAGRLFTPDVIRAMAS-INERPVIFALSNPTAQ 146 (294)
T ss_dssp C-CSEEEECCCSSCCSCHHHHHHHHH-HCSSCEEEECCSSGGG
T ss_pred C-CceEEEecCCCCcCCHHHHHHHHh-cCCCcEEEEccCCCCc
Confidence 3 66665554 555567888887764 4577899999996554
|
| >d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=81.24 E-value=0.73 Score=42.11 Aligned_cols=32 Identities=16% Similarity=0.150 Sum_probs=28.5
Q ss_pred cEEEEc-ccHHHHHHHHHHHHCCCeEEEEeCCh
Q psy9637 6 DIGLIG-LAVMGQNLILNMNDHGFTVVAYNRTT 37 (490)
Q Consensus 6 ~IgiIG-lG~MG~~lA~~L~~~G~~V~v~dr~~ 37 (490)
+|-|.| .|.+|+.++..|+++||+|++.||..
T Consensus 2 ~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~ 34 (321)
T d1rpna_ 2 SALVTGITGQDGAYLAKLLLEKGYRVHGLVARR 34 (321)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred EEEEECCCCHHHHHHHHHHHHCcCEEEEEECCC
Confidence 677776 69999999999999999999999864
|
| >d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Thermus aquaticus [TaxId: 271]
Probab=81.19 E-value=0.58 Score=39.64 Aligned_cols=30 Identities=20% Similarity=0.445 Sum_probs=27.4
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCeEEEEe
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGFTVVAYN 34 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~~V~v~d 34 (490)
|||||=|+|++|+.+.+.|.+.+++|+..|
T Consensus 1 ikigINGfGRIGR~~~R~l~~~~i~iv~IN 30 (168)
T d2g82a1 1 MKVGINGFGRIGRQVFRILHSRGVEVALIN 30 (168)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCEEEEE
T ss_pred CEEEEECCcHHHHHHHHHHhcCCCEEEEEC
Confidence 589999999999999999999999988775
|
| >d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=81.17 E-value=0.71 Score=42.53 Aligned_cols=32 Identities=19% Similarity=0.154 Sum_probs=27.3
Q ss_pred cEEEEc-ccHHHHHHHHHHHHCCCeEEEEeCCh
Q psy9637 6 DIGLIG-LAVMGQNLILNMNDHGFTVVAYNRTT 37 (490)
Q Consensus 6 ~IgiIG-lG~MG~~lA~~L~~~G~~V~v~dr~~ 37 (490)
++-|.| .|.+|..++..|+++||+|+++||..
T Consensus 3 ~~LVTGatGfiG~~lv~~Ll~~g~~V~~~~r~~ 35 (339)
T d1n7ha_ 3 IALITGITGQDGSYLTEFLLGKGYEVHGLIRRS 35 (339)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred EEEEeCCccHHHHHHHHHHHHCcCEEEEEECCC
Confidence 444555 69999999999999999999999853
|
| >d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=80.97 E-value=0.38 Score=41.08 Aligned_cols=33 Identities=3% Similarity=0.100 Sum_probs=30.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCC
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRT 36 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~ 36 (490)
..+|.|||.|.-|..-|..+++.|.+|+++++.
T Consensus 5 ~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~ 37 (192)
T d1vdca1 5 NTRLCIVGSGPAAHTAAIYAARAELKPLLFEGW 37 (192)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCCEEECCS
T ss_pred cceEEEECCCHHHHHHHHHHHHcCCcEEEEEee
Confidence 358999999999999999999999999999864
|
| >d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Halohydrin dehalogenase HheC species: Agrobacterium tumefaciens [TaxId: 358]
Probab=80.95 E-value=0.74 Score=41.25 Aligned_cols=73 Identities=12% Similarity=0.228 Sum_probs=49.2
Q ss_pred EEcc-cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEEecCCCchHHHHHH
Q psy9637 9 LIGL-AVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMMLVKAGSAVDDFID 87 (490)
Q Consensus 9 iIGl-G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil~vp~~~~v~~vl~ 87 (490)
|-|. +-+|..+|+.|++.|++|++.||+.++.+++..... ....+|+ .+...++++++
T Consensus 5 VTGas~GiG~aiA~~la~~Ga~V~i~~r~~~~~~~~~~~~~----------------~~~~~dv-----~~~~~~~~~~~ 63 (252)
T d1zmta1 5 VTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELEAFAE----------------TYPQLKP-----MSEQEPAELIE 63 (252)
T ss_dssp ESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHHHHH----------------HCTTSEE-----CCCCSHHHHHH
T ss_pred EECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHhhhC----------------cEEEecc-----CCHHHHHHHHH
Confidence 4454 459999999999999999999999887776643221 1111343 23356777777
Q ss_pred hhcccCCCCCEEEcC
Q psy9637 88 KLVPLLEKGDIIIDG 102 (490)
Q Consensus 88 ~l~~~l~~g~iiId~ 102 (490)
.+.....+=|++|+.
T Consensus 64 ~~~~~~G~iDiLVnN 78 (252)
T d1zmta1 64 AVTSAYGQVDVLVSN 78 (252)
T ss_dssp HHHHHHSCCCEEEEE
T ss_pred HHHHHcCCCCEEEEC
Confidence 776655555777753
|
| >d1dlja3 c.26.3.1 (A:295-402) UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain species: Streptococcus pyogenes [TaxId: 1314]
Probab=80.82 E-value=1.8 Score=33.41 Aligned_cols=64 Identities=14% Similarity=0.202 Sum_probs=46.4
Q ss_pred CcEEEEccc----------HHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhCCCCcEEEE
Q psy9637 5 GDIGLIGLA----------VMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNLKKPRRVMM 74 (490)
Q Consensus 5 ~~IgiIGlG----------~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l~~~dvIil 74 (490)
.+|||.|+- .-...+...|.+.|..|.+||+.-...+. ........++.++.+. +|+||+
T Consensus 16 k~I~ilGl~fK~n~dD~R~Sp~i~ii~~L~~~g~~v~iyDP~v~~~~~-------~~~~~~~~~l~~~~~~---sDiII~ 85 (108)
T d1dlja3 16 KVVGVYRLIMKSNSDNFRESAIKDVIDILKSKDIKIIIYEPMLNKLES-------EDQSVLVNDLENFKKQ---ANIIVT 85 (108)
T ss_dssp CEEEEECCCSSTTCSCCTTCHHHHHHHHHHTSSCEEEEECTTCSCCCT-------TCCSEECCCHHHHHHH---CSEEEC
T ss_pred CEEEEEEEEECCCCcchhhhhHHHHHHHHhccccceeeecCCcChhHh-------ccCCEEEeCHHHHHhh---CCEEEE
Confidence 469999983 45677899999999999999987432110 1123457899999988 898776
Q ss_pred ecCC
Q psy9637 75 LVKA 78 (490)
Q Consensus 75 ~vp~ 78 (490)
....
T Consensus 86 ~~~~ 89 (108)
T d1dlja3 86 NRYD 89 (108)
T ss_dssp SSCC
T ss_pred cCCc
Confidence 6554
|
| >d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tubulin nucleotide-binding domain-like superfamily: Tubulin nucleotide-binding domain-like family: Tubulin, GTPase domain domain: Cell-division protein FtsZ species: Thermotoga maritima [TaxId: 2336]
Probab=80.82 E-value=1.6 Score=37.58 Aligned_cols=37 Identities=30% Similarity=0.363 Sum_probs=30.5
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC---eEEEEeCChHHHH
Q psy9637 5 GDIGLIGLAVMGQNLILNMNDHGF---TVVAYNRTTAKVD 41 (490)
Q Consensus 5 ~~IgiIGlG~MG~~lA~~L~~~G~---~V~v~dr~~~~~~ 41 (490)
+||-|||.|--|.+++.+|.+.|. +....|.+.+.++
T Consensus 1 ~kI~viGvGGaG~n~v~~l~~~~~~~v~~iainTD~~~L~ 40 (194)
T d1w5fa1 1 LKIKVIGVGGAGNNAINRMIEIGIHGVEFVAVNTDLQVLE 40 (194)
T ss_dssp CCEEEEEEHHHHHHHHHHHHHHCCTTEEEEEEESCHHHHH
T ss_pred CeEEEEEeCchHHHHHHHHHHcCCCceEEEEEcCCHHHHh
Confidence 489999999999999999998774 5567788776554
|
| >d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=80.67 E-value=0.71 Score=39.70 Aligned_cols=34 Identities=18% Similarity=0.280 Sum_probs=30.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCeEEEEeCCh
Q psy9637 4 KGDIGLIGLAVMGQNLILNMNDHGFTVVAYNRTT 37 (490)
Q Consensus 4 ~~~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~ 37 (490)
.-.|.|||.|.-|...|..+++.|.+|+++++++
T Consensus 3 ~yDvvVIGgGpaGl~aA~~aa~~G~kV~vie~~~ 36 (221)
T d1dxla1 3 ENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRG 36 (221)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSS
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEEecC
Confidence 3468999999999999999999999999999753
|
| >d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=80.16 E-value=0.75 Score=40.10 Aligned_cols=32 Identities=22% Similarity=0.316 Sum_probs=29.8
Q ss_pred cEEEEcccHHHHHHHHHHHHCCCeEEEEeCCh
Q psy9637 6 DIGLIGLAVMGQNLILNMNDHGFTVVAYNRTT 37 (490)
Q Consensus 6 ~IgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~ 37 (490)
.|.|||.|.-|...|..+++.|++|.++++++
T Consensus 8 DviIIG~GPaGlsaA~~aa~~G~~V~viE~~~ 39 (229)
T d1ojta1 8 DVVVLGGGPGGYSAAFAAADEGLKVAIVERYK 39 (229)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeccC
Confidence 58899999999999999999999999998764
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=80.15 E-value=0.69 Score=39.35 Aligned_cols=95 Identities=17% Similarity=0.212 Sum_probs=57.3
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccCCCCeeccCCHHHHHhhC--CCCcEEEEecCCCch
Q psy9637 5 GDIGLIG-LAVMGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAKGTNIIGAHSLEELVKNL--KKPRRVMMLVKAGSA 81 (490)
Q Consensus 5 ~~IgiIG-lG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~i~~~~s~~e~v~~l--~~~dvIil~vp~~~~ 81 (490)
.+|-|.| .|-+|....+-....|.+|+...+++++.+.+.+.|+. .-+.......+.+..+ +..|+|+-++... .
T Consensus 33 ~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~~lGa~-~vi~~~~~~~~~~~~~~~~gvD~vid~vgg~-~ 110 (176)
T d1xa0a2 33 GPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVLGAK-EVLAREDVMAERIRPLDKQRWAAAVDPVGGR-T 110 (176)
T ss_dssp CCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHTTCS-EEEECC---------CCSCCEEEEEECSTTT-T
T ss_pred CEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHHhcccc-eeeecchhHHHHHHHhhccCcCEEEEcCCch-h
Confidence 3588888 58999887777778999999999999999888877654 1111112223333222 2468888887653 4
Q ss_pred HHHHHHhhcccCCCCCEEEcCCCC
Q psy9637 82 VDDFIDKLVPLLEKGDIIIDGGNS 105 (490)
Q Consensus 82 v~~vl~~l~~~l~~g~iiId~s~~ 105 (490)
....++ .|.++-.++.++..
T Consensus 111 ~~~~l~----~l~~~Griv~~G~~ 130 (176)
T d1xa0a2 111 LATVLS----RMRYGGAVAVSGLT 130 (176)
T ss_dssp HHHHHH----TEEEEEEEEECSCC
T ss_pred HHHHHH----HhCCCceEEEeecc
Confidence 444444 34445555555543
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=80.12 E-value=0.49 Score=42.79 Aligned_cols=112 Identities=13% Similarity=0.247 Sum_probs=64.5
Q ss_pred CcEEEEcccH--HHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcccC---CCCeec-cCCHHHHHhhCCCCcEEEEecCC
Q psy9637 5 GDIGLIGLAV--MGQNLILNMNDHGFTVVAYNRTTAKVDSFLANEAK---GTNIIG-AHSLEELVKNLKKPRRVMMLVKA 78 (490)
Q Consensus 5 ~~IgiIGlG~--MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~---~~~i~~-~~s~~e~v~~l~~~dvIil~vp~ 78 (490)
++|.=+|+|. +...||+.+... -.|+.+|++++.++...+.... ..++.. ..+..+.... ...|.|++-+|+
T Consensus 87 ~rVLEiG~GsG~lt~~la~~v~~~-g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~~~-~~fD~V~ld~p~ 164 (250)
T d1yb2a1 87 MDILEVGVGSGNMSSYILYALNGK-GTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISD-QMYDAVIADIPD 164 (250)
T ss_dssp CEEEEECCTTSHHHHHHHHHHTTS-SEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCS-CCEEEEEECCSC
T ss_pred CEEEEeeeeCcHHHHHHHHHhCCC-cEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeeccccc-ceeeeeeecCCc
Confidence 5777787664 444455554333 4899999999988776653211 123322 2233332221 236999998887
Q ss_pred CchHHHHHHhhcccCCCCCEEEcCCCCChHHHHHHHHHHHHccc
Q psy9637 79 GSAVDDFIDKLVPLLEKGDIIIDGGNSEYQDTDRRSKALEAKGL 122 (490)
Q Consensus 79 ~~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~~~~~l~~~gi 122 (490)
+. ++++.+...|+||-+++-... ......+..+.+++.|+
T Consensus 165 p~---~~l~~~~~~LKpGG~lv~~~P-~i~Qv~~~~~~l~~~gf 204 (250)
T d1yb2a1 165 PW---NHVQKIASMMKPGSVATFYLP-NFDQSEKTVLSLSASGM 204 (250)
T ss_dssp GG---GSHHHHHHTEEEEEEEEEEES-SHHHHHHHHHHSGGGTE
T ss_pred hH---HHHHHHHHhcCCCceEEEEeC-CcChHHHHHHHHHHCCC
Confidence 64 345666667777776664322 22445555566766664
|